Query 038612
Match_columns 678
No_of_seqs 602 out of 5310
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 22:22:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038612.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038612hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.6E-68 5.4E-73 609.8 43.8 529 28-567 5-752 (768)
2 3rgz_A Protein brassinosteroid 100.0 6.1E-54 2.1E-58 489.5 33.2 443 76-530 200-742 (768)
3 3t6q_A CD180 antigen; protein- 100.0 4E-52 1.4E-56 464.3 37.5 467 76-554 33-563 (606)
4 4eco_A Uncharacterized protein 100.0 3.3E-53 1.1E-57 472.4 23.1 499 32-553 27-602 (636)
5 3vq2_A TLR4, TOLL-like recepto 100.0 9.9E-51 3.4E-55 453.0 37.4 466 76-554 32-561 (606)
6 4ecn_A Leucine-rich repeat pro 100.0 6.8E-52 2.3E-56 468.3 27.0 457 28-529 262-841 (876)
7 1ziw_A TOLL-like receptor 3; i 100.0 2.9E-50 1E-54 455.3 39.1 472 76-555 25-626 (680)
8 3t6q_A CD180 antigen; protein- 100.0 2.2E-49 7.4E-54 442.2 38.5 450 74-534 55-566 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 6.5E-50 2.2E-54 461.0 33.8 479 63-555 13-564 (844)
10 1ziw_A TOLL-like receptor 3; i 100.0 1.5E-47 5E-52 433.2 41.5 456 77-533 74-627 (680)
11 2z63_A TOLL-like receptor 4, v 100.0 4.5E-48 1.5E-52 428.7 30.4 466 76-553 28-533 (570)
12 3vq2_A TLR4, TOLL-like recepto 100.0 3.2E-47 1.1E-51 424.7 36.0 451 80-549 15-532 (606)
13 2z63_A TOLL-like receptor 4, v 100.0 1.4E-46 4.8E-51 416.6 36.4 435 98-549 28-505 (570)
14 3j0a_A TOLL-like receptor 5; m 100.0 8.5E-47 2.9E-51 435.0 34.5 457 79-550 7-538 (844)
15 2z81_A CD282 antigen, TOLL-lik 100.0 2.5E-46 8.6E-51 412.5 26.8 475 63-554 3-513 (549)
16 2z7x_B TOLL-like receptor 1, v 100.0 1.8E-45 6.2E-50 402.5 27.4 450 79-552 3-482 (520)
17 4eco_A Uncharacterized protein 100.0 1.7E-46 5.8E-51 418.3 16.0 431 75-531 104-603 (636)
18 2z81_A CD282 antigen, TOLL-lik 100.0 2.5E-45 8.4E-50 404.5 23.5 444 74-533 48-515 (549)
19 4ecn_A Leucine-rich repeat pro 100.0 8.4E-45 2.9E-49 410.5 24.0 440 98-552 323-841 (876)
20 2z7x_B TOLL-like receptor 1, v 100.0 5.1E-44 1.7E-48 391.1 24.7 436 76-533 21-486 (520)
21 4g8a_A TOLL-like receptor 4; l 100.0 1.3E-41 4.6E-46 382.0 37.5 248 300-554 330-583 (635)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.6E-42 5.6E-47 382.2 27.0 433 79-532 34-514 (562)
23 4g8a_A TOLL-like receptor 4; l 100.0 4.8E-41 1.6E-45 377.4 35.5 447 77-533 53-585 (635)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.5E-41 5.2E-46 374.5 27.7 432 98-554 31-513 (562)
25 3v47_A TOLL-like receptor 5B a 100.0 2.5E-40 8.5E-45 355.7 31.5 371 98-508 30-412 (455)
26 3v47_A TOLL-like receptor 5B a 100.0 2.1E-40 7.1E-45 356.3 29.8 384 101-534 13-414 (455)
27 1ogq_A PGIP-2, polygalacturona 100.0 2.9E-40 9.9E-45 335.3 23.4 291 31-357 2-302 (313)
28 1jl5_A Outer protein YOPM; leu 100.0 1.3E-38 4.6E-43 339.0 26.8 387 97-549 10-427 (454)
29 1jl5_A Outer protein YOPM; leu 100.0 2.5E-37 8.4E-42 329.3 25.5 391 76-532 11-433 (454)
30 2id5_A Lingo-1, leucine rich r 100.0 2.7E-37 9.2E-42 333.8 24.1 347 174-556 15-361 (477)
31 1o6v_A Internalin A; bacterial 100.0 1.3E-36 4.3E-41 327.0 29.1 345 97-505 45-389 (466)
32 3bz5_A Internalin-J, INLJ; leu 100.0 8.7E-37 3E-41 325.3 26.5 357 93-534 37-393 (457)
33 1o6v_A Internalin A; bacterial 100.0 3.2E-36 1.1E-40 323.9 30.9 347 120-530 44-390 (466)
34 3bz5_A Internalin-J, INLJ; leu 100.0 8.1E-36 2.8E-40 317.8 27.9 354 76-512 42-395 (457)
35 2id5_A Lingo-1, leucine rich r 100.0 8.4E-35 2.9E-39 314.3 29.1 319 101-455 14-332 (477)
36 3o6n_A APL1; leucine-rich repe 100.0 2.4E-34 8E-39 302.2 26.8 350 54-481 3-353 (390)
37 3oja_B Anopheles plasmodium-re 100.0 3E-34 1E-38 317.9 25.0 350 53-459 8-361 (597)
38 1ogq_A PGIP-2, polygalacturona 100.0 6.4E-34 2.2E-38 288.6 18.4 253 300-555 52-308 (313)
39 3o6n_A APL1; leucine-rich repe 100.0 4.6E-33 1.6E-37 292.3 22.8 335 168-554 43-377 (390)
40 3oja_B Anopheles plasmodium-re 100.0 4.6E-33 1.6E-37 308.3 22.8 336 169-556 50-385 (597)
41 4fmz_A Internalin; leucine ric 100.0 3E-32 1E-36 281.6 23.4 304 97-432 43-346 (347)
42 4fmz_A Internalin; leucine ric 100.0 5.3E-32 1.8E-36 279.7 25.2 307 166-528 40-346 (347)
43 1z7x_W Ribonuclease inhibitor; 100.0 3E-35 1E-39 316.7 -7.4 384 122-528 3-440 (461)
44 1xku_A Decorin; proteoglycan, 100.0 1.4E-30 4.8E-35 266.8 25.3 268 122-404 52-329 (330)
45 2ft3_A Biglycan; proteoglycan, 100.0 9.6E-31 3.3E-35 268.2 22.6 288 99-430 34-331 (332)
46 4fcg_A Uncharacterized protein 100.0 1.5E-31 5.1E-36 272.8 15.3 278 31-334 23-313 (328)
47 1z7x_W Ribonuclease inhibitor; 100.0 5E-35 1.7E-39 315.0 -11.8 384 99-507 4-443 (461)
48 2ft3_A Biglycan; proteoglycan, 100.0 7E-30 2.4E-34 261.8 25.9 267 196-502 55-331 (332)
49 1xku_A Decorin; proteoglycan, 100.0 1.7E-29 5.7E-34 258.8 26.5 289 147-502 32-330 (330)
50 2z80_A TOLL-like receptor 2, v 100.0 1.5E-28 5.2E-33 254.1 19.2 290 57-411 23-318 (353)
51 3ogk_B Coronatine-insensitive 100.0 3E-31 1E-35 294.9 -4.4 424 94-524 69-547 (592)
52 2z66_A Variable lymphocyte rec 100.0 3E-28 1E-32 246.7 17.4 273 277-555 11-291 (306)
53 3ogk_B Coronatine-insensitive 100.0 2.5E-31 8.7E-36 295.5 -9.8 406 114-529 65-527 (592)
54 2z66_A Variable lymphocyte rec 100.0 1.3E-27 4.5E-32 241.9 18.4 252 64-336 7-262 (306)
55 3zyi_A Leucine-rich repeat-con 100.0 7.8E-27 2.7E-31 249.7 25.0 252 275-533 56-308 (452)
56 1ozn_A Reticulon 4 receptor; N 100.0 1.2E-27 4E-32 239.6 17.0 250 276-554 14-264 (285)
57 4fcg_A Uncharacterized protein 99.9 1.6E-27 5.6E-32 242.8 17.3 224 299-528 82-314 (328)
58 3zyj_A Leucine-rich repeat-con 99.9 1.1E-26 3.9E-31 247.5 24.3 252 275-533 45-297 (440)
59 2z80_A TOLL-like receptor 2, v 99.9 9.5E-28 3.2E-32 248.1 15.2 257 274-532 53-318 (353)
60 1ozn_A Reticulon 4 receptor; N 99.9 4.9E-26 1.7E-30 227.8 22.6 254 79-342 14-268 (285)
61 3zyi_A Leucine-rich repeat-con 99.9 5.1E-26 1.7E-30 243.3 24.1 228 98-383 75-303 (452)
62 3zyj_A Leucine-rich repeat-con 99.9 6.7E-26 2.3E-30 241.5 23.8 227 123-383 65-292 (440)
63 1wwl_A Monocyte differentiatio 99.9 4.2E-28 1.4E-32 245.9 4.4 248 270-529 40-310 (312)
64 1wwl_A Monocyte differentiatio 99.9 9.3E-28 3.2E-32 243.4 4.9 249 96-407 41-309 (312)
65 3g06_A SSPH2 (leucine-rich rep 99.9 3.9E-26 1.3E-30 250.1 15.7 291 52-418 10-308 (622)
66 3o53_A Protein LRIM1, AGAP0063 99.9 2.7E-27 9.2E-32 240.5 4.9 257 100-402 12-270 (317)
67 3oja_A Leucine-rich immune mol 99.9 2.2E-26 7.5E-31 247.3 12.2 214 300-528 36-250 (487)
68 3o53_A Protein LRIM1, AGAP0063 99.9 1.7E-26 5.7E-31 234.7 9.7 237 271-523 32-270 (317)
69 3g06_A SSPH2 (leucine-rich rep 99.9 2E-24 6.9E-29 236.6 25.5 269 122-443 40-308 (622)
70 2p1m_B Transport inhibitor res 99.9 8.1E-29 2.8E-33 275.5 -10.3 433 63-504 34-519 (594)
71 2o6q_A Variable lymphocyte rec 99.9 2.6E-24 9.1E-29 213.1 22.6 219 61-288 2-220 (270)
72 3oja_A Leucine-rich immune mol 99.9 1.4E-25 4.7E-30 241.1 14.0 262 246-523 3-270 (487)
73 2p1m_B Transport inhibitor res 99.9 1.1E-28 3.8E-33 274.3 -12.4 414 76-501 66-541 (594)
74 2z62_A TOLL-like receptor 4, v 99.9 2.6E-24 9E-29 214.1 18.8 210 299-534 29-243 (276)
75 2z62_A TOLL-like receptor 4, v 99.9 2E-23 6.9E-28 207.7 19.8 209 273-505 28-238 (276)
76 2o6q_A Variable lymphocyte rec 99.9 5.1E-23 1.8E-27 203.9 21.0 185 347-532 38-222 (270)
77 3rfs_A Internalin B, repeat mo 99.9 5.3E-23 1.8E-27 203.9 16.9 166 87-257 30-195 (272)
78 1p9a_G Platelet glycoprotein I 99.9 1E-22 3.6E-27 203.3 18.9 205 319-531 7-211 (290)
79 3rfs_A Internalin B, repeat mo 99.9 7E-23 2.4E-27 203.0 16.8 206 76-297 41-246 (272)
80 1p9a_G Platelet glycoprotein I 99.9 2.5E-22 8.5E-27 200.6 20.1 207 341-554 5-211 (290)
81 3m19_A Variable lymphocyte rec 99.9 3.8E-22 1.3E-26 195.3 18.4 190 62-256 3-192 (251)
82 3goz_A Leucine-rich repeat-con 99.9 1.1E-23 3.7E-28 218.2 3.9 262 102-385 2-299 (362)
83 3goz_A Leucine-rich repeat-con 99.9 1.5E-23 5.2E-28 217.1 2.5 262 126-414 2-304 (362)
84 4glp_A Monocyte differentiatio 99.9 8.4E-22 2.9E-26 199.4 15.1 227 274-528 65-307 (310)
85 2ast_B S-phase kinase-associat 99.9 3.8E-23 1.3E-27 212.3 5.3 252 274-534 48-312 (336)
86 2ca6_A RAN GTPase-activating p 99.9 6.1E-24 2.1E-28 222.4 -1.3 231 300-531 34-319 (386)
87 2xwt_C Thyrotropin receptor; s 99.9 1.1E-21 3.6E-26 190.7 14.6 196 324-525 33-236 (239)
88 3m19_A Variable lymphocyte rec 99.9 5E-21 1.7E-25 187.3 18.9 181 347-531 15-195 (251)
89 4glp_A Monocyte differentiatio 99.9 4.7E-22 1.6E-26 201.2 11.3 225 300-550 66-306 (310)
90 2ast_B S-phase kinase-associat 99.9 6.6E-23 2.2E-27 210.5 4.5 142 62-232 35-182 (336)
91 2ca6_A RAN GTPase-activating p 99.9 5.3E-24 1.8E-28 222.8 -3.9 111 300-410 189-319 (386)
92 2xwt_C Thyrotropin receptor; s 99.9 3.5E-21 1.2E-25 187.0 15.7 197 299-502 32-237 (239)
93 1h6u_A Internalin H; cell adhe 99.8 1.6E-20 5.4E-25 189.5 15.2 173 342-529 59-231 (308)
94 1h6u_A Internalin H; cell adhe 99.8 2.4E-20 8E-25 188.2 16.5 150 94-256 37-186 (308)
95 4ay9_X Follicle-stimulating ho 99.8 3E-20 1E-24 191.2 17.3 244 125-405 12-257 (350)
96 2o6s_A Variable lymphocyte rec 99.8 3.7E-20 1.3E-24 175.6 13.9 152 64-229 7-158 (208)
97 4ay9_X Follicle-stimulating ho 99.8 2.9E-19 1E-23 183.8 18.2 241 276-525 12-256 (350)
98 3cvr_A Invasion plasmid antige 99.8 3E-19 1E-23 193.1 15.9 215 54-321 33-253 (571)
99 3e6j_A Variable lymphocyte rec 99.8 1.3E-18 4.6E-23 167.1 17.2 164 55-233 10-173 (229)
100 2o6s_A Variable lymphocyte rec 99.8 1.1E-18 3.6E-23 165.5 15.8 149 101-253 10-158 (208)
101 2v70_A SLIT-2, SLIT homolog 2 99.8 5.2E-19 1.8E-23 168.8 12.5 138 396-534 34-172 (220)
102 3cvr_A Invasion plasmid antige 99.8 1.2E-18 4.1E-23 188.4 15.5 187 299-514 60-253 (571)
103 2v9t_B SLIT homolog 2 protein 99.8 9.1E-19 3.1E-23 167.1 12.7 156 349-532 14-169 (220)
104 1h6t_A Internalin B; cell adhe 99.8 2.8E-18 9.5E-23 171.4 15.1 181 85-286 33-213 (291)
105 2v9t_B SLIT homolog 2 protein 99.8 6.2E-18 2.1E-22 161.3 16.7 133 122-255 32-164 (220)
106 2xot_A Amphoterin-induced prot 99.8 2.8E-18 9.7E-23 177.2 13.4 179 350-532 22-206 (361)
107 1h6t_A Internalin B; cell adhe 99.7 1.2E-17 4E-22 166.8 16.0 171 76-259 46-216 (291)
108 2v70_A SLIT-2, SLIT homolog 2 99.7 2.8E-17 9.5E-22 156.8 17.2 151 80-232 15-166 (220)
109 3e6j_A Variable lymphocyte rec 99.7 2.8E-17 9.6E-22 157.9 16.2 156 348-532 21-176 (229)
110 1m9s_A Internalin B; cell inva 99.7 1.7E-17 6E-22 181.5 16.2 168 77-257 44-211 (605)
111 1m9s_A Internalin B; cell inva 99.7 9.3E-18 3.2E-22 183.6 13.9 174 318-506 39-212 (605)
112 4b8c_D Glucose-repressible alc 99.7 6.5E-19 2.2E-23 197.8 4.8 230 31-316 128-359 (727)
113 2xot_A Amphoterin-induced prot 99.7 1.9E-17 6.7E-22 170.9 14.1 161 80-242 22-186 (361)
114 4ezg_A Putative uncharacterize 99.7 2.5E-17 8.7E-22 154.3 12.3 152 95-255 41-193 (197)
115 1w8a_A SLIT protein; signaling 99.7 1.5E-17 5.2E-22 155.0 10.0 155 397-555 11-166 (192)
116 1dce_A Protein (RAB geranylger 99.7 5.3E-19 1.8E-23 192.4 -1.9 218 269-522 345-567 (567)
117 1dce_A Protein (RAB geranylger 99.7 2.3E-19 7.8E-24 195.3 -4.9 192 319-534 346-552 (567)
118 4ezg_A Putative uncharacterize 99.7 6.7E-17 2.3E-21 151.5 12.4 152 76-233 44-195 (197)
119 1xeu_A Internalin C; cellular 99.7 5.9E-17 2E-21 159.0 10.9 170 321-530 18-187 (263)
120 1xeu_A Internalin C; cellular 99.7 5.2E-17 1.8E-21 159.4 9.8 167 300-506 21-187 (263)
121 3sb4_A Hypothetical leucine ri 99.7 5.5E-17 1.9E-21 165.3 10.2 100 299-400 227-327 (329)
122 2ell_A Acidic leucine-rich nuc 99.6 6.3E-16 2.2E-20 140.8 11.6 134 96-232 22-160 (168)
123 4b8c_D Glucose-repressible alc 99.6 5.4E-17 1.9E-21 182.2 4.8 181 289-480 216-404 (727)
124 2wfh_A SLIT homolog 2 protein 99.6 5.3E-16 1.8E-20 144.4 10.0 131 397-532 13-143 (193)
125 3sb4_A Hypothetical leucine ri 99.6 8.9E-16 3E-20 156.4 12.2 201 321-528 100-310 (329)
126 2je0_A Acidic leucine-rich nuc 99.6 6.3E-16 2.1E-20 137.7 8.4 128 97-227 16-148 (149)
127 1w8a_A SLIT protein; signaling 99.6 4.7E-15 1.6E-19 138.1 14.4 127 125-255 11-138 (192)
128 4fdw_A Leucine rich hypothetic 99.6 5.3E-14 1.8E-18 146.2 23.6 270 97-406 112-382 (401)
129 2ell_A Acidic leucine-rich nuc 99.6 3.3E-15 1.1E-19 136.0 11.4 132 370-528 24-160 (168)
130 2je0_A Acidic leucine-rich nuc 99.6 1.8E-15 6E-20 134.8 8.1 129 120-251 15-148 (149)
131 2o6r_A Variable lymphocyte rec 99.6 9.8E-15 3.3E-19 134.1 12.9 133 396-532 9-141 (177)
132 2wfh_A SLIT homolog 2 protein 99.6 3.1E-14 1.1E-18 132.4 14.8 107 147-255 32-138 (193)
133 2o6r_A Variable lymphocyte rec 99.6 3.7E-14 1.3E-18 130.2 14.2 86 98-183 28-113 (177)
134 4fs7_A Uncharacterized protein 99.6 4E-13 1.4E-17 140.3 23.4 66 135-203 60-125 (394)
135 4fdw_A Leucine rich hypothetic 99.5 5E-13 1.7E-17 138.8 22.7 196 196-407 158-358 (401)
136 4fs7_A Uncharacterized protein 99.5 1.4E-12 5E-17 136.1 24.4 329 92-472 65-393 (394)
137 1a9n_A U2A', U2A'; complex (nu 99.5 2.9E-14 9.8E-19 130.8 8.4 132 94-232 15-153 (176)
138 1a9n_A U2A', U2A'; complex (nu 99.5 1E-13 3.5E-18 127.0 9.2 104 422-529 45-154 (176)
139 1ds9_A Outer arm dynein; leuci 99.4 5.9E-16 2E-20 145.1 -8.6 134 98-237 18-158 (198)
140 1ds9_A Outer arm dynein; leuci 99.4 2E-15 6.9E-20 141.4 -5.2 130 347-482 19-155 (198)
141 3g39_A Variable lymphocyte rec 99.4 6.5E-13 2.2E-17 120.7 11.2 108 422-532 12-119 (170)
142 2r9u_A Variable lymphocyte rec 99.4 1.4E-12 4.8E-17 118.8 11.4 108 422-532 15-122 (174)
143 4gt6_A Cell surface protein; l 99.4 6.2E-11 2.1E-15 123.7 24.6 135 337-503 256-390 (394)
144 3g39_A Variable lymphocyte rec 99.4 2.8E-12 9.6E-17 116.4 12.2 104 125-232 12-115 (170)
145 2r9u_A Variable lymphocyte rec 99.4 4.1E-12 1.4E-16 115.7 12.2 104 125-232 15-118 (174)
146 4gt6_A Cell surface protein; l 99.3 8.2E-10 2.8E-14 115.1 25.3 320 137-527 54-390 (394)
147 2ifg_A High affinity nerve gro 99.2 4.5E-11 1.5E-15 122.6 10.3 89 118-208 27-116 (347)
148 2ifg_A High affinity nerve gro 99.2 6.5E-11 2.2E-15 121.3 11.1 106 424-532 13-120 (347)
149 3un9_A NLR family member X1; l 99.2 1.7E-12 5.7E-17 133.6 -1.2 88 442-529 154-253 (372)
150 3un9_A NLR family member X1; l 99.2 1E-12 3.4E-17 135.2 -2.9 111 122-232 72-196 (372)
151 4h09_A Hypothetical leucine ri 99.0 9E-08 3.1E-12 99.1 27.0 65 424-490 291-355 (379)
152 4h09_A Hypothetical leucine ri 99.0 5.6E-08 1.9E-12 100.6 24.1 317 117-516 41-357 (379)
153 2ra8_A Uncharacterized protein 98.8 3E-09 1E-13 108.2 4.7 140 193-335 170-320 (362)
154 2ra8_A Uncharacterized protein 98.8 1.8E-09 6.1E-14 109.9 2.6 147 143-294 169-328 (362)
155 3rw6_A Nuclear RNA export fact 98.7 6.7E-10 2.3E-14 107.0 -3.2 81 144-225 168-257 (267)
156 1io0_A Tropomodulin; LRR prote 98.4 7.9E-08 2.7E-12 88.1 2.3 89 95-183 33-136 (185)
157 1io0_A Tropomodulin; LRR prote 98.4 7.1E-08 2.4E-12 88.4 1.0 118 113-231 27-163 (185)
158 3rw6_A Nuclear RNA export fact 98.2 1.3E-06 4.6E-11 84.0 5.3 139 62-202 76-258 (267)
159 3e4g_A ATP synthase subunit S, 98.0 9.8E-07 3.3E-11 78.5 1.5 84 443-526 61-150 (176)
160 3e4g_A ATP synthase subunit S, 98.0 2.2E-06 7.6E-11 76.2 2.6 59 122-180 61-124 (176)
161 4aoj_A High affinity nerve gro 97.8 3.7E-06 1.3E-10 84.4 1.7 47 632-678 42-93 (329)
162 4gt4_A Tyrosine-protein kinase 97.8 2.8E-06 9.6E-11 84.3 0.3 53 624-678 21-79 (308)
163 4asz_A BDNF/NT-3 growth factor 97.8 4.9E-06 1.7E-10 82.2 1.7 47 632-678 14-65 (299)
164 2c30_A Serine/threonine-protei 97.6 2.1E-05 7.2E-10 79.0 3.6 52 619-670 23-84 (321)
165 2nru_A Interleukin-1 receptor- 97.5 8.6E-05 2.9E-09 73.9 6.2 48 617-666 11-64 (307)
166 4fih_A Serine/threonine-protei 97.4 7.2E-05 2.5E-09 75.0 4.2 47 632-678 75-121 (346)
167 2qkw_B Protein kinase; three-h 97.4 1.7E-05 5.9E-10 79.7 -0.6 50 620-670 28-77 (321)
168 3uim_A Brassinosteroid insensi 97.4 4.7E-05 1.6E-09 76.6 2.5 50 617-667 16-65 (326)
169 4fie_A Serine/threonine-protei 97.3 0.00014 4.9E-09 74.9 4.2 48 631-678 151-198 (423)
170 4aw2_A Serine/threonine-protei 97.2 8.7E-05 3E-09 77.7 1.3 46 621-666 64-109 (437)
171 3omv_A RAF proto-oncogene seri 97.2 6.6E-05 2.2E-09 74.2 0.3 43 633-678 38-82 (307)
172 3fpq_A Serine/threonine-protei 97.1 0.00015 5.3E-09 70.9 2.4 31 636-666 31-61 (290)
173 4ase_A Vascular endothelial gr 97.0 0.00015 5.2E-09 73.2 1.6 50 629-678 62-117 (353)
174 3p1a_A MYT1 kinase, membrane-a 97.0 0.00019 6.4E-09 71.7 1.8 36 631-666 57-92 (311)
175 4b9d_A Serine/threonine-protei 97.0 0.0002 6.9E-09 71.9 2.0 37 631-667 24-60 (350)
176 1pgv_A TMD-1, tropomodulin TMD 97.0 0.00027 9.1E-09 64.1 2.3 84 96-179 39-135 (197)
177 3hyh_A Carbon catabolite-derep 96.8 0.00034 1.1E-08 67.9 2.0 36 631-666 13-48 (275)
178 4g3f_A NF-kappa-beta-inducing 96.8 0.00063 2.1E-08 67.9 3.9 37 630-666 57-93 (336)
179 3rfe_A Platelet glycoprotein I 96.8 0.0017 5.9E-08 54.8 5.9 59 471-531 12-71 (130)
180 3dzo_A Rhoptry kinase domain; 96.8 0.0004 1.4E-08 72.3 2.0 41 626-666 73-113 (413)
181 3ubd_A Ribosomal protein S6 ki 96.6 0.0011 3.6E-08 65.3 3.7 35 632-666 25-62 (304)
182 3kul_A Ephrin type-A receptor 96.6 0.0005 1.7E-08 69.0 1.2 47 621-667 30-88 (325)
183 1pgv_A TMD-1, tropomodulin TMD 96.6 0.0012 4E-08 59.9 3.3 108 75-182 40-169 (197)
184 2clq_A Mitogen-activated prote 96.5 0.0012 4.1E-08 65.0 3.5 36 633-668 24-59 (295)
185 2vd5_A DMPK protein; serine/th 96.5 0.0013 4.3E-08 68.2 3.8 46 621-666 51-96 (412)
186 4aw0_A HPDK1, 3-phosphoinositi 96.5 0.0016 5.3E-08 64.2 4.0 36 631-666 32-67 (311)
187 4b99_A Mitogen-activated prote 96.4 0.0017 5.9E-08 66.7 4.2 35 632-666 55-89 (398)
188 2w4o_A Calcium/calmodulin-depe 96.4 0.0023 7.7E-08 64.9 4.7 38 630-667 52-89 (349)
189 3rfe_A Platelet glycoprotein I 96.4 0.006 2.1E-07 51.4 6.6 56 126-183 12-68 (130)
190 3cbl_A C-FES, proto-oncogene t 96.4 0.0013 4.3E-08 67.6 2.7 37 631-667 114-150 (377)
191 3v8s_A RHO-associated protein 96.3 0.0021 7E-08 66.6 4.1 45 622-666 60-104 (410)
192 3pg1_A Mitogen-activated prote 96.3 0.0013 4.6E-08 66.9 2.7 45 621-666 12-56 (362)
193 2x4f_A Myosin light chain kina 96.3 0.00086 2.9E-08 68.7 1.1 36 633-668 91-126 (373)
194 1qcf_A Haematopoetic cell kina 96.3 0.0016 5.4E-08 68.7 3.2 38 630-668 187-224 (454)
195 3byv_A Rhoptry kinase; malaria 96.3 0.00096 3.3E-08 68.5 1.3 37 630-666 72-108 (377)
196 3fxz_A Serine/threonine-protei 96.2 0.0016 5.4E-08 64.3 2.5 37 631-667 20-56 (297)
197 4f0f_A Serine/threonine-protei 96.2 0.0018 6.2E-08 63.5 2.9 37 631-667 19-55 (287)
198 4f9c_A Cell division cycle 7-r 96.2 0.0027 9.4E-08 64.3 4.1 43 624-666 14-59 (361)
199 1j1b_A Glycogen synthase kinas 96.1 0.0033 1.1E-07 65.5 4.3 36 632-667 55-90 (420)
200 3e3p_A Protein kinase, putativ 96.1 0.0034 1.1E-07 63.8 4.3 44 624-667 16-59 (360)
201 2qol_A Ephrin receptor; recept 96.1 0.00093 3.2E-08 68.4 -0.2 37 631-667 45-84 (373)
202 1opk_A P150, C-ABL, proto-onco 96.1 0.0017 5.8E-08 69.2 1.9 38 631-668 220-257 (495)
203 2j7t_A Serine/threonine-protei 96.1 0.0024 8.4E-08 63.0 2.8 38 631-668 19-56 (302)
204 3v5w_A G-protein coupled recep 96.0 0.0038 1.3E-07 67.8 4.4 36 631-666 189-224 (689)
205 2zv2_A Calcium/calmodulin-depe 96.0 0.0047 1.6E-07 60.8 4.8 37 631-667 13-49 (298)
206 2r5t_A Serine/threonine-protei 96.0 0.0047 1.6E-07 63.1 4.8 37 631-667 38-74 (373)
207 3vhe_A Vascular endothelial gr 96.0 0.0014 4.9E-08 66.6 0.9 47 621-667 12-63 (359)
208 3a99_A Proto-oncogene serine/t 96.0 0.0055 1.9E-07 61.1 5.2 38 630-667 42-79 (320)
209 1u5q_A Serine/threonine protei 96.0 0.0026 8.8E-08 64.4 2.7 37 631-667 54-90 (348)
210 3ll6_A Cyclin G-associated kin 96.0 0.0018 6.1E-08 65.1 1.5 37 631-667 28-64 (337)
211 1k9a_A Carboxyl-terminal SRC k 96.0 0.0027 9.3E-08 66.8 2.8 35 631-667 193-227 (450)
212 3uqc_A Probable conserved tran 96.0 0.003 1E-07 61.9 2.9 36 632-667 32-67 (286)
213 2ac3_A MAP kinase-interacting 96.0 0.0027 9.3E-08 63.2 2.6 33 636-668 18-50 (316)
214 1fmk_A C-SRC, P60-SRC, tyrosin 95.9 0.0029 9.8E-08 66.7 2.9 37 631-668 184-220 (452)
215 1xjd_A Protein kinase C, theta 95.9 0.005 1.7E-07 62.1 4.6 38 629-666 15-52 (345)
216 3hko_A Calcium/calmodulin-depe 95.9 0.0022 7.5E-08 64.8 1.9 41 626-666 21-61 (345)
217 2vuw_A Serine/threonine-protei 95.9 0.0026 8.8E-08 64.0 2.3 35 631-667 20-54 (336)
218 3llt_A Serine/threonine kinase 95.9 0.0023 7.8E-08 65.1 2.0 48 619-666 23-70 (360)
219 2vx3_A Dual specificity tyrosi 95.9 0.0032 1.1E-07 64.7 3.0 40 627-666 50-89 (382)
220 2buj_A Serine/threonine-protei 95.9 0.0019 6.6E-08 64.3 1.3 37 631-667 29-65 (317)
221 3uto_A Twitchin; kinase, muscl 95.9 0.002 6.8E-08 69.8 1.3 37 631-667 157-193 (573)
222 4dc2_A Protein kinase C IOTA t 95.9 0.0061 2.1E-07 62.7 4.9 37 631-667 52-88 (396)
223 3i6u_A CDS1, serine/threonine- 95.9 0.0047 1.6E-07 64.3 4.0 37 630-666 134-170 (419)
224 3dls_A PAS domain-containing s 95.9 0.0043 1.5E-07 62.4 3.6 38 630-667 23-60 (335)
225 3p86_A Serine/threonine-protei 95.8 0.0031 1.1E-07 62.5 2.5 36 630-667 36-71 (309)
226 2x7f_A TRAF2 and NCK-interacti 95.8 0.0026 8.9E-08 63.6 1.8 48 620-667 13-60 (326)
227 2h8h_A Proto-oncogene tyrosine 95.8 0.0035 1.2E-07 67.5 2.9 38 630-668 266-303 (535)
228 3gen_A Tyrosine-protein kinase 95.8 0.0035 1.2E-07 61.2 2.5 36 631-667 24-59 (283)
229 3soc_A Activin receptor type-2 95.8 0.0062 2.1E-07 60.8 4.4 34 631-666 24-57 (322)
230 4ejn_A RAC-alpha serine/threon 95.8 0.0047 1.6E-07 64.9 3.6 37 630-666 147-183 (446)
231 2w1i_A JAK2; chromosomal rearr 95.8 0.0036 1.2E-07 62.6 2.6 37 632-668 42-82 (326)
232 2iwi_A Serine/threonine-protei 95.8 0.0041 1.4E-07 61.8 2.9 40 628-667 28-67 (312)
233 2y7j_A Phosphorylase B kinase 95.8 0.0085 2.9E-07 61.0 5.4 41 627-667 90-130 (365)
234 3an0_A Dual specificity mitoge 95.7 0.0072 2.5E-07 60.8 4.5 38 630-667 50-87 (340)
235 3gbz_A Kinase, CMGC CDK; ssgci 95.7 0.0058 2E-07 61.2 3.7 40 628-667 31-70 (329)
236 3is5_A Calcium-dependent prote 95.6 0.0045 1.5E-07 60.5 2.6 37 631-667 22-58 (285)
237 3aln_A Dual specificity mitoge 95.6 0.0089 3.1E-07 59.7 4.9 37 631-667 22-58 (327)
238 3lxl_A Tyrosine-protein kinase 95.6 0.0031 1E-07 63.2 1.4 36 632-667 24-63 (327)
239 3txo_A PKC-L, NPKC-ETA, protei 95.6 0.0066 2.3E-07 61.4 3.8 36 631-666 23-58 (353)
240 3mi9_A Cell division protein k 95.6 0.0052 1.8E-07 62.2 3.0 37 631-667 17-53 (351)
241 3q60_A ROP5B; pseudokinase, tr 95.6 0.0078 2.7E-07 61.4 4.2 38 630-667 61-98 (371)
242 1p4o_A Insulin-like growth fac 95.5 0.0012 4E-08 66.0 -2.0 47 621-667 15-66 (322)
243 3a7i_A MST3 kinase, serine/thr 95.5 0.0058 2E-07 60.3 3.1 36 632-667 23-58 (303)
244 3kfa_A Tyrosine-protein kinase 95.5 0.0037 1.3E-07 61.2 1.6 39 629-667 11-49 (288)
245 3kex_A Receptor tyrosine-prote 95.5 0.0078 2.7E-07 60.1 4.0 35 632-666 14-52 (325)
246 1kob_A Twitchin; kinase, intra 95.5 0.0036 1.2E-07 64.3 1.5 37 631-667 51-87 (387)
247 2qr7_A Ribosomal protein S6 ki 95.5 0.0082 2.8E-07 60.4 4.1 38 630-667 21-58 (342)
248 3l9p_A Anaplastic lymphoma kin 95.5 0.0035 1.2E-07 63.9 1.3 36 631-666 71-111 (367)
249 1mqb_A Ephrin type-A receptor 95.5 0.0035 1.2E-07 63.0 1.2 46 622-667 26-84 (333)
250 3qup_A Tyrosine-protein kinase 95.4 0.0013 4.6E-08 65.7 -2.0 38 629-666 21-61 (323)
251 2zmd_A Dual specificity protei 95.4 0.0047 1.6E-07 63.6 2.0 35 632-667 57-91 (390)
252 2vwi_A Serine/threonine-protei 95.4 0.0052 1.8E-07 60.6 2.2 37 630-666 14-50 (303)
253 1byg_A CSK, protein (C-termina 95.4 0.0074 2.5E-07 58.7 3.3 35 631-667 21-55 (278)
254 3kvw_A DYRK2, dual specificity 95.4 0.011 3.7E-07 61.7 4.7 36 631-666 97-132 (429)
255 2i0e_A Protein kinase C-beta I 95.4 0.0071 2.4E-07 61.2 3.1 37 630-666 19-55 (353)
256 1luf_A Muscle-specific tyrosin 95.3 0.0033 1.1E-07 63.4 0.5 40 628-667 44-88 (343)
257 3poz_A Epidermal growth factor 95.3 0.0035 1.2E-07 62.8 0.6 36 631-666 15-54 (327)
258 1vzo_A Ribosomal protein S6 ki 95.3 0.0089 3E-07 60.6 3.6 36 631-666 54-92 (355)
259 3qyz_A Mitogen-activated prote 95.3 0.0061 2.1E-07 62.1 2.2 37 630-666 26-62 (364)
260 3niz_A Rhodanese family protei 95.3 0.011 3.8E-07 58.6 4.1 35 631-666 21-55 (311)
261 3eqc_A Dual specificity mitoge 95.3 0.0056 1.9E-07 62.2 1.9 37 631-667 33-69 (360)
262 3fhr_A MAP kinase-activated pr 95.2 0.012 4.2E-07 59.0 4.3 36 631-666 28-64 (336)
263 4fr4_A YANK1, serine/threonine 95.2 0.013 4.5E-07 59.9 4.6 36 631-666 15-50 (384)
264 3fe3_A MAP/microtubule affinit 95.2 0.0087 3E-07 59.9 3.1 38 630-667 14-51 (328)
265 1rdq_E PKA C-alpha, CAMP-depen 95.2 0.014 4.8E-07 58.9 4.6 36 631-666 41-76 (350)
266 1zar_A RIO2 kinase; serine kin 95.1 0.019 6.3E-07 56.0 5.2 36 631-667 90-125 (282)
267 4aaa_A Cyclin-dependent kinase 95.1 0.015 5.2E-07 58.1 4.7 37 631-667 25-61 (331)
268 1t46_A HOMO sapiens V-KIT hard 95.1 0.0064 2.2E-07 60.3 1.8 37 631-667 23-64 (313)
269 3op5_A Serine/threonine-protei 95.1 0.011 3.7E-07 60.2 3.5 39 629-667 33-76 (364)
270 3c4z_A Rhodopsin kinase; Ser/T 95.1 0.014 4.8E-07 62.5 4.6 36 631-666 185-220 (543)
271 2psq_A Fibroblast growth facto 95.1 0.0064 2.2E-07 62.1 1.8 37 631-667 81-124 (370)
272 4exu_A Mitogen-activated prote 95.1 0.017 5.7E-07 58.9 4.9 36 631-666 42-77 (371)
273 1wak_A Serine/threonine-protei 95.1 0.015 5.1E-07 59.8 4.6 36 631-666 37-72 (397)
274 3coi_A Mitogen-activated prote 95.1 0.015 5E-07 58.9 4.4 36 631-666 24-59 (353)
275 3nsz_A CK II alpha, casein kin 95.1 0.015 5E-07 58.2 4.3 36 631-666 36-71 (330)
276 3a62_A Ribosomal protein S6 ki 95.1 0.011 3.8E-07 59.1 3.4 37 631-667 17-56 (327)
277 4e5w_A Tyrosine-protein kinase 95.0 0.009 3.1E-07 58.8 2.7 36 632-667 22-61 (302)
278 3lm5_A Serine/threonine-protei 95.0 0.012 4.1E-07 58.8 3.6 44 623-666 20-64 (327)
279 3ttj_A Mitogen-activated prote 95.0 0.007 2.4E-07 63.8 1.9 36 631-666 62-97 (464)
280 3e7e_A HBUB1, BUB1A, mitotic c 95.0 0.0099 3.4E-07 60.5 3.0 39 628-667 62-106 (365)
281 2wqm_A Serine/threonine-protei 95.0 0.016 5.5E-07 57.3 4.4 36 631-666 32-67 (310)
282 2h34_A Serine/threonine-protei 95.0 0.0083 2.8E-07 59.4 2.3 36 631-666 34-69 (309)
283 2dyl_A Dual specificity mitoge 95.0 0.016 5.5E-07 57.5 4.3 37 631-667 25-61 (318)
284 3pls_A Macrophage-stimulating 95.0 0.005 1.7E-07 60.6 0.5 34 633-666 23-59 (298)
285 3cek_A Dual specificity protei 95.0 0.0067 2.3E-07 60.2 1.4 46 620-666 17-62 (313)
286 2acx_A G protein-coupled recep 94.9 0.015 5E-07 62.6 4.1 37 630-666 183-219 (576)
287 3pfq_A PKC-B, PKC-beta, protei 94.9 0.015 5.2E-07 64.4 4.3 37 630-666 340-376 (674)
288 2ozo_A Tyrosine-protein kinase 94.9 0.0082 2.8E-07 65.7 2.2 30 638-667 343-374 (613)
289 3uc3_A Serine/threonine-protei 94.9 0.021 7E-07 58.0 5.0 37 631-667 20-56 (361)
290 1phk_A Phosphorylase kinase; g 94.9 0.018 6.3E-07 56.4 4.5 38 630-667 16-53 (298)
291 1rjb_A FL cytokine receptor; k 94.9 0.0097 3.3E-07 59.9 2.4 39 629-667 43-86 (344)
292 3n9x_A Phosphotransferase; mal 94.9 0.016 5.3E-07 60.6 4.1 36 631-666 26-61 (432)
293 2wei_A Calmodulin-domain prote 94.8 0.0097 3.3E-07 58.2 2.2 37 631-667 22-58 (287)
294 4fl3_A Tyrosine-protein kinase 94.8 0.0078 2.7E-07 66.1 1.7 32 636-667 374-407 (635)
295 3mdy_A Bone morphogenetic prot 94.8 0.015 5.3E-07 58.2 3.8 36 629-666 35-70 (337)
296 1cm8_A Phosphorylated MAP kina 94.8 0.014 4.7E-07 59.5 3.3 36 631-666 25-60 (367)
297 2eue_A Carbon catabolite derep 94.8 0.017 5.7E-07 56.0 3.8 36 631-666 13-48 (275)
298 3c0i_A Peripheral plasma membr 94.8 0.018 6.2E-07 58.2 4.1 35 632-666 25-59 (351)
299 2pml_X PFPK7, Ser/Thr protein 94.8 0.009 3.1E-07 60.3 1.8 34 631-666 31-64 (348)
300 2fst_X Mitogen-activated prote 94.7 0.016 5.6E-07 58.9 3.7 36 631-666 29-64 (367)
301 2vgo_A Serine/threonine-protei 94.7 0.023 7.9E-07 55.3 4.6 36 631-666 14-49 (284)
302 3com_A Serine/threonine-protei 94.7 0.021 7.3E-07 56.5 4.3 38 630-667 28-65 (314)
303 2jii_A Serine/threonine-protei 94.7 0.011 3.7E-07 59.9 2.1 37 631-667 42-86 (352)
304 2bdw_A Hypothetical protein K1 94.6 0.021 7.1E-07 58.0 4.2 38 630-667 28-65 (362)
305 3c1x_A Hepatocyte growth facto 94.6 0.011 3.6E-07 60.4 1.9 34 633-666 91-127 (373)
306 3lxp_A Non-receptor tyrosine-p 94.6 0.01 3.5E-07 59.0 1.7 35 633-667 33-71 (318)
307 3rp9_A Mitogen-activated prote 94.6 0.017 5.9E-07 60.8 3.5 36 631-666 53-88 (458)
308 1t4h_A Serine/threonine-protei 94.6 0.023 8E-07 55.5 4.2 34 633-666 28-61 (290)
309 1fvr_A Tyrosine-protein kinase 94.6 0.013 4.4E-07 58.5 2.4 35 632-666 26-62 (327)
310 2rku_A Serine/threonine-protei 94.5 0.021 7.2E-07 55.9 3.8 36 631-666 15-50 (294)
311 1zth_A RIO1 serine protein kin 94.5 0.025 8.6E-07 54.2 4.2 31 635-666 51-84 (258)
312 1q8y_A SR protein kinase; tran 94.5 0.027 9.3E-07 57.3 4.6 36 631-666 19-54 (373)
313 2xrw_A Mitogen-activated prote 94.5 0.027 9.3E-07 57.3 4.6 36 631-666 25-60 (371)
314 1mp8_A Focal adhesion kinase 1 94.5 0.01 3.6E-07 57.7 1.4 36 631-666 15-53 (281)
315 2xir_A Vascular endothelial gr 94.4 0.019 6.5E-07 56.9 3.3 46 622-667 18-68 (316)
316 1z57_A Dual specificity protei 94.4 0.025 8.4E-07 56.6 4.0 35 632-666 15-50 (339)
317 1xbb_A Tyrosine-protein kinase 94.4 0.0072 2.5E-07 59.2 -0.0 36 632-667 17-55 (291)
318 3lij_A Calcium/calmodulin depe 94.4 0.016 5.5E-07 61.7 2.7 36 632-667 38-73 (494)
319 2yfx_A Tyrosine-protein kinase 94.4 0.0092 3.2E-07 59.6 0.7 36 631-666 30-70 (327)
320 3tt0_A Basic fibroblast growth 94.3 0.013 4.5E-07 60.0 1.8 37 631-667 69-112 (382)
321 2y4i_B KSR2, HKSR2, kinase sup 94.3 0.038 1.3E-06 54.7 5.2 34 630-666 32-65 (319)
322 1nxk_A MAP kinase-activated pr 94.3 0.026 9E-07 58.1 4.0 30 637-666 68-97 (400)
323 3lzb_A Epidermal growth factor 94.3 0.013 4.3E-07 58.6 1.5 36 631-666 15-54 (327)
324 2pvf_A Fibroblast growth facto 94.2 0.027 9.4E-07 56.3 4.0 37 631-667 35-78 (334)
325 2y94_A 5'-AMP-activated protei 94.2 0.032 1.1E-06 58.8 4.6 35 632-666 17-51 (476)
326 1b6c_B TGF-B superfamily recep 94.2 0.028 9.7E-07 56.3 4.1 35 630-666 41-75 (342)
327 2owb_A Serine/threonine-protei 94.2 0.027 9.3E-07 56.4 3.8 36 631-666 41-76 (335)
328 3m2w_A MAP kinase-activated pr 94.2 0.03 1E-06 55.0 4.0 30 637-666 24-53 (299)
329 3q5i_A Protein kinase; CDPK, m 94.1 0.034 1.2E-06 59.3 4.6 37 630-666 35-71 (504)
330 2ivs_A Proto-oncogene tyrosine 94.1 0.032 1.1E-06 55.2 4.0 37 631-667 23-64 (314)
331 4e7w_A Glycogen synthase kinas 94.0 0.03 1E-06 57.5 3.8 35 632-667 41-75 (394)
332 3og7_A AKAP9-BRAF fusion prote 94.0 0.011 3.6E-07 58.0 0.2 34 631-667 24-57 (289)
333 3brb_A Proto-oncogene tyrosine 93.9 0.017 6E-07 57.1 1.7 40 628-667 31-73 (313)
334 4gyi_A RIO2 kinase; protein ki 93.9 0.036 1.2E-06 56.1 3.9 32 634-666 98-129 (397)
335 3mwu_A Calmodulin-domain prote 93.8 0.041 1.4E-06 58.4 4.5 35 632-666 23-57 (486)
336 3nyv_A Calmodulin-domain prote 93.8 0.042 1.5E-06 58.2 4.6 36 631-666 26-61 (484)
337 3gni_B Strad alpha; kinase fol 93.6 0.043 1.5E-06 56.2 4.0 37 631-667 25-63 (389)
338 3f66_A Hepatocyte growth facto 93.6 0.016 5.6E-07 56.8 0.8 35 632-666 26-63 (298)
339 2eu9_A Dual specificity protei 93.5 0.046 1.6E-06 55.0 4.0 36 631-666 19-55 (355)
340 2i1m_A Macrophage colony-stimu 93.4 0.054 1.8E-06 54.0 4.3 40 628-667 43-87 (333)
341 2pzi_A Probable serine/threoni 93.4 0.016 5.6E-07 64.4 0.4 36 631-666 80-116 (681)
342 3lb7_A RAF proto-oncogene seri 93.3 0.021 7.3E-07 56.4 1.1 32 632-666 37-68 (307)
343 2v62_A Serine/threonine-protei 93.3 0.035 1.2E-06 55.9 2.6 37 631-667 37-76 (345)
344 3rgf_A Cyclin-dependent kinase 93.1 0.045 1.5E-06 56.4 3.3 31 636-666 26-58 (405)
345 1u46_A ACK-1, activated CDC42 93.1 0.015 5.2E-07 56.8 -0.3 36 631-666 18-56 (291)
346 3p23_A Serine/threonine-protei 92.8 0.058 2E-06 56.1 3.6 35 630-666 23-58 (432)
347 2j0j_A Focal adhesion kinase 1 92.7 0.04 1.4E-06 60.7 2.2 38 630-667 389-429 (656)
348 2rio_A Serine/threonine-protei 92.6 0.072 2.5E-06 55.5 4.0 33 633-666 17-49 (434)
349 3qa8_A MGC80376 protein; kinas 92.0 0.01 3.4E-07 64.9 -3.5 36 631-666 14-49 (676)
350 3en9_A Glycoprotease, O-sialog 87.5 0.51 1.8E-05 50.4 5.3 31 634-666 339-369 (540)
351 3d1u_A Putative fructosamine-3 81.9 0.59 2E-05 45.3 2.4 32 634-666 18-49 (288)
352 1qpc_A LCK kinase; alpha beta 78.2 1.1 3.9E-05 42.8 3.1 25 631-655 13-37 (279)
353 3g2f_A Bone morphogenetic prot 71.1 1.9 6.6E-05 42.5 2.7 23 631-653 13-35 (336)
354 2jwa_A Receptor tyrosine-prote 64.2 1 3.4E-05 28.9 -0.7 8 596-603 32-39 (44)
355 3f7w_A Putative fructosamine-3 61.5 3.7 0.00013 39.5 2.5 33 633-666 17-49 (288)
356 2lz0_A Uncharacterized protein 51.8 17 0.0006 28.2 4.4 43 111-154 9-51 (100)
357 2lz0_A Uncharacterized protein 48.0 28 0.00095 27.0 5.1 45 207-252 8-52 (100)
358 2l2t_A Receptor tyrosine-prote 41.7 11 0.00037 24.2 1.4 7 596-602 31-37 (44)
359 2olc_A MTR kinase, methylthior 34.9 23 0.00079 35.6 3.5 30 636-665 35-64 (397)
360 3cxl_A N-chimerin; SH2, RHO-GA 34.0 4.2 0.00014 42.3 -2.4 24 644-667 152-181 (463)
361 1nd4_A Aminoglycoside 3'-phosp 30.5 18 0.00062 33.5 1.7 27 640-667 29-55 (264)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.6e-68 Score=609.75 Aligned_cols=529 Identities=34% Similarity=0.510 Sum_probs=394.3
Q ss_pred CCCCCCHHhHHHHHHHHhcCCCCCCCCCCCCCCCCCCCcccccccCCCCcEEEEEcCCCCCCCc----------------
Q 038612 28 FSVHTNETDRLALLAIKSQFHDPLEVTSSWDTSVNLCQWTGVTCGRRHQRVTELYLRNQSLGAD---------------- 91 (678)
Q Consensus 28 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~l~~~---------------- 91 (678)
.+.++.++|++||++||+++.||. .+++|+.+.+||.|.||+|+ .++|+.++++++.+.+.
T Consensus 5 ~~~~~~~~~~~all~~k~~~~~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~ 81 (768)
T 3rgz_A 5 SPSQSLYREIHQLISFKDVLPDKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLES 81 (768)
T ss_dssp ---CCHHHHHHHHHHHHTTCSCTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCE
T ss_pred ccccCCHHHHHHHHHHHhhCCCcc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccc
Confidence 344557899999999999999988 89999988899999999998 58999999999887764
Q ss_pred ------------ccCCCCCCCCEEECCCCCCccccCh--hhcCCccCcEEeccCCCCccCCCccC-CCCCCCCEEE----
Q 038612 92 ------------IGYSSWSKLEKLSIAVNHLRGQLPA--SIGNLSALQAFDVGENTLHGRIPESL-GQLRSLKFLN---- 152 (678)
Q Consensus 92 ------------~~~~~l~~L~~L~Ls~n~~~~~~~~--~l~~l~~L~~L~ls~n~l~~~~p~~~-~~l~~L~~L~---- 152 (678)
..+..+++|++|+|++|.+.+.+|. .++++++|++|++++|.+.+..|..+ .++++|++|+
T Consensus 82 l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n 161 (768)
T 3rgz_A 82 LFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 161 (768)
T ss_dssp EECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSS
T ss_pred cCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCC
Confidence 4677889999999999999888887 78888888888888777665555433 3333333333
Q ss_pred ---------------------------------------------cccccccccCcccccCCCCCcEEECCCCCCCccCC
Q 038612 153 ---------------------------------------------VEENNFSGMVPVSIYNISSLEMIFLPANRLEGILP 187 (678)
Q Consensus 153 ---------------------------------------------L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p 187 (678)
+++|.+++.+|. ++++++|++|++++|.+++.+|
T Consensus 162 ~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~ 240 (768)
T 3rgz_A 162 SISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFS 240 (768)
T ss_dssp CCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHH
T ss_pred ccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCccc
Confidence 333333333333 4555555555555555554444
Q ss_pred hhhhcCCCCCCEEEcccCcC----------------------CCCCCccCcCC-CCCcEEeccCCcceeccCCCCCCCCC
Q 038612 188 LNIGFNLPNLKSLIVAQNNL----------------------TGPIPHSLSNA-SNLIELNLGQNHFTGKVSIDFNGLSD 244 (678)
Q Consensus 188 ~~~~~~l~~L~~L~l~~n~l----------------------~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~ 244 (678)
..+. .+++|++|++++|.+ ++.+|..+.+. ++|++|++++|++++..|..+..+++
T Consensus 241 ~~l~-~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~ 319 (768)
T 3rgz_A 241 RAIS-TCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL 319 (768)
T ss_dssp HHTT-TCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTT
T ss_pred HHHh-cCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCC
Confidence 4443 444444444444333 23444444443 66777777777666666666666666
Q ss_pred CCeEEcccCcccccCC-------------------------CCcc-------------------cccccCC--CCCCcEE
Q 038612 245 LAWLSFEANNLGAEAS-------------------------NDLD-------------------FVFSLTN--CSKLEWL 278 (678)
Q Consensus 245 L~~L~l~~n~l~~~~~-------------------------~~~~-------------------~~~~l~~--~~~L~~L 278 (678)
|++|++++|.+.+..+ ..+. .+..+.. +++|++|
T Consensus 320 L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L 399 (768)
T 3rgz_A 320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL 399 (768)
T ss_dssp CCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEE
T ss_pred ccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEE
Confidence 6666666665542211 1100 0111111 4456666
Q ss_pred EcccCCCCcccChhHhhccccCcEEEccCcceeccCCccCcCCccccccccccceeeeccCcccCCCcccceeeccCccc
Q 038612 279 ELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLIGTIPHVIGSLKNLQLLYLYGNSL 358 (678)
Q Consensus 279 ~L~~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l 358 (678)
++++|.+.+.+|..+..++. |+.|++++|.+++.+|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|.+
T Consensus 400 ~L~~n~l~~~~p~~l~~l~~-L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l 478 (768)
T 3rgz_A 400 YLQNNGFTGKIPPTLSNCSE-LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL 478 (768)
T ss_dssp ECCSSEEEEECCGGGGGCTT-CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred ECCCCccccccCHHHhcCCC-CCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcc
Confidence 66666666666666666654 77777777777777777777777777777777777777777777778888888888888
Q ss_pred cccCCccccCCCCCcEEeccCCccCccCCCCCCCcCCCceEecCCCccccccCcccccccccceEEEcCCCcccccCCcc
Q 038612 359 EGNIPSSLGNLTLLTKLALDFNNLQGNIPSSLGSCQNLMELIVSHNKLNGTLPQQILEIRTLSFQLDLSNNLLSGYLPFR 438 (678)
Q Consensus 359 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~L~l~~n~l~~~~~~~ 438 (678)
.+.+|..+.++++|++|++++|++.+.+|.++..+++|++|++++|++.+.+|..+..++.+ +.|++++|.++|.+|..
T Consensus 479 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L-~~L~Ls~N~l~g~ip~~ 557 (768)
T 3rgz_A 479 TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL-IWLDLNTNLFNGTIPAA 557 (768)
T ss_dssp CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTC-CEEECCSSEEESBCCGG
T ss_pred cCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCC-CEEECCCCccCCcCChH
Confidence 87788888888888888888888888888888888888888888888888888888888888 78888888887666643
Q ss_pred ----------------------------------------------------------------------ccCcccCCee
Q 038612 439 ----------------------------------------------------------------------VGNLKNLARL 448 (678)
Q Consensus 439 ----------------------------------------------------------------------~~~l~~L~~L 448 (678)
+..+++|++|
T Consensus 558 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~L 637 (768)
T 3rgz_A 558 MFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL 637 (768)
T ss_dssp GGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEE
T ss_pred HhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEE
Confidence 3345678999
Q ss_pred ecccCcccccCCccccCCCCCCEEECcCCccccccCccccCCCCCCEEECCCCcccccCCccCCCCCCCCEEeCCcCcce
Q 038612 449 DISMNHFFGEIPATLSACTSLEYLYMQGNSFGGRIPLSLISLKSLKVLDLSRNNLSGKIPEYLENLPFLQYLDLSYNHFE 528 (678)
Q Consensus 449 ~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 528 (678)
||++|+++|.+|..++.+++|+.|+|++|+++|.+|..++.+++|+.|||++|+++|.+|..+..+++|++|++++|+++
T Consensus 638 dLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~ 717 (768)
T 3rgz_A 638 DMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717 (768)
T ss_dssp ECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEE
T ss_pred ECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCccCCCCceeccCCCCCcccCCCCCCCCCCCCC
Q 038612 529 GQVPAKGVFHNKTSISLVGNENLCGGLDELHLPSCPLKG 567 (678)
Q Consensus 529 ~~~p~~~~~~~l~~~~~~~n~~lc~~~~~~~~~~c~~~~ 567 (678)
|.+|..+.+.++...++.||+.+||.+ .+.|+...
T Consensus 718 g~iP~~~~~~~~~~~~~~gN~~Lcg~~----l~~C~~~~ 752 (768)
T 3rgz_A 718 GPIPEMGQFETFPPAKFLNNPGLCGYP----LPRCDPSN 752 (768)
T ss_dssp EECCSSSSGGGSCGGGGCSCTEEESTT----SCCCCSCC
T ss_pred ccCCCchhhccCCHHHhcCCchhcCCC----CcCCCCCc
Confidence 999999999999999999999999974 24676443
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=6.1e-54 Score=489.49 Aligned_cols=443 Identities=31% Similarity=0.490 Sum_probs=331.4
Q ss_pred CcEEEEEcCCCCCCCc-ccCCCCCCCCEEECCCCCCccccChhhcCCccCcEEeccCCCCccCCCccCCCCCCCCEEEcc
Q 038612 76 QRVTELYLRNQSLGAD-IGYSSWSKLEKLSIAVNHLRGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVE 154 (678)
Q Consensus 76 ~~v~~l~l~~~~l~~~-~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~ 154 (678)
..++.|+++++.+.+. +.+..+++|++|++++|.+++.+|..+.++++|++|++++|.+.+.+|.. .+++|++|+++
T Consensus 200 ~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~ 277 (768)
T 3rgz_A 200 VNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLA 277 (768)
T ss_dssp TTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECC
T ss_pred CcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECc
Confidence 4555666666655542 33566666666666666666666666666666666666666655444332 33444444444
Q ss_pred cccccccCcccccCC-CCCcEEECCCCCCCccCChhhhcCCCCCCEEEcccCcCCCCCCcc-CcCCCCCcEEeccCCcce
Q 038612 155 ENNFSGMVPVSIYNI-SSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHS-LSNASNLIELNLGQNHFT 232 (678)
Q Consensus 155 ~n~l~~~~~~~~~~l-~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~ 232 (678)
+|.+++.+|..+... ++|++|++++|.+++.+|..+. .+++|++|++++|.+++.+|.. +.++++|++|++++|+++
T Consensus 278 ~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~ 356 (768)
T 3rgz_A 278 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG-SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 356 (768)
T ss_dssp SSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGG-GCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEE
T ss_pred CCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHh-cCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccC
Confidence 444444444444332 4444444444444444444443 4444444444444444333332 444444444444444444
Q ss_pred eccCCCCCC---------------------------CCCCCeEEcccCcccccCCCCcccccccCCCCCCcEEEcccCCC
Q 038612 233 GKVSIDFNG---------------------------LSDLAWLSFEANNLGAEASNDLDFVFSLTNCSKLEWLELRKNQF 285 (678)
Q Consensus 233 ~~~~~~~~~---------------------------l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~ 285 (678)
+.+|..+.. +++|++|++++|.+.+. .+..+..+++|++|++++|.+
T Consensus 357 ~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~------~p~~l~~l~~L~~L~Ls~N~l 430 (768)
T 3rgz_A 357 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK------IPPTLSNCSELVSLHLSFNYL 430 (768)
T ss_dssp ECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEE------CCGGGGGCTTCCEEECCSSEE
T ss_pred ccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccc------cCHHHhcCCCCCEEECcCCcc
Confidence 444444433 44455555555554433 334678899999999999999
Q ss_pred CcccChhHhhccccCcEEEccCcceeccCCccCcCCccccccccccceeeeccCcccCCCcccceeeccCccccccCCcc
Q 038612 286 GGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLIGTIPHVIGSLKNLQLLYLYGNSLEGNIPSS 365 (678)
Q Consensus 286 ~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 365 (678)
.+.+|..+..++. |+.|++++|.+.+.+|..+..+++|+.|++++|++.+.+|..++.+++|++|++++|++.+.+|.+
T Consensus 431 ~~~~p~~l~~l~~-L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~ 509 (768)
T 3rgz_A 431 SGTIPSSLGSLSK-LRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW 509 (768)
T ss_dssp ESCCCGGGGGCTT-CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred cCcccHHHhcCCC-CCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChH
Confidence 9999999999986 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcEEeccCCccCccCCCCCCCcCCCceEecCCCccccccCccccc-----------------------------
Q 038612 366 LGNLTLLTKLALDFNNLQGNIPSSLGSCQNLMELIVSHNKLNGTLPQQILE----------------------------- 416 (678)
Q Consensus 366 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~----------------------------- 416 (678)
++.+++|++|++++|++.+.+|..+..+++|+.|++++|++.|.+|..++.
T Consensus 510 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (768)
T 3rgz_A 510 IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHG 589 (768)
T ss_dssp GGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCS
T ss_pred HhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccc
Confidence 999999999999999999999999999999999999999999888876543
Q ss_pred -----------------------------------------ccccceEEEcCCCcccccCCccccCcccCCeeecccCcc
Q 038612 417 -----------------------------------------IRTLSFQLDLSNNLLSGYLPFRVGNLKNLARLDISMNHF 455 (678)
Q Consensus 417 -----------------------------------------~~~l~~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~ 455 (678)
++.+ +.|++++|+++|.+|..++.+++|+.|+|++|++
T Consensus 590 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L-~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l 668 (768)
T 3rgz_A 590 AGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM-MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 668 (768)
T ss_dssp SEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCC-CEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCC
T ss_pred cccccccccccchhhhccccccccccccceecccCchhhhccccc-cEEECcCCcccccCCHHHhccccCCEEeCcCCcc
Confidence 2334 6899999999999999999999999999999999
Q ss_pred cccCCccccCCCCCCEEECcCCccccccCccccCCCCCCEEECCCCcccccCCccCCCCCCCCEEeCCcCcceee
Q 038612 456 FGEIPATLSACTSLEYLYMQGNSFGGRIPLSLISLKSLKVLDLSRNNLSGKIPEYLENLPFLQYLDLSYNHFEGQ 530 (678)
Q Consensus 456 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~ 530 (678)
+|.+|..++.+++|+.|+|++|+++|.+|..+..+++|++|++++|+++|.+|.. ..+..+....+.+|+..+-
T Consensus 669 ~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg 742 (768)
T 3rgz_A 669 SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCG 742 (768)
T ss_dssp CSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEES
T ss_pred CCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcC
Confidence 9999999999999999999999999999999999999999999999999999974 3455566667778875543
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4e-52 Score=464.29 Aligned_cols=467 Identities=21% Similarity=0.223 Sum_probs=395.3
Q ss_pred CcEEEEEcCCCCCCCc--ccCCCCCCCCEEECCCCCCccccChhhcCCccCcEEeccCCCCccCCCccCCCCCCCCEEEc
Q 038612 76 QRVTELYLRNQSLGAD--IGYSSWSKLEKLSIAVNHLRGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNV 153 (678)
Q Consensus 76 ~~v~~l~l~~~~l~~~--~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L 153 (678)
..++.++++++.+.+. ..+.++++|++|++++|.+.+..|.+|.++++|++|++++|.+.+..|..|+++++|++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 5789999999998865 46899999999999999999999999999999999999999999888999999999999999
Q ss_pred ccccccccCcccccCCCCCcEEECCCCCCCccCChhhhcCCCCCCEEEcccCcCCCCCCccCcCCCCCc--EEeccCCcc
Q 038612 154 EENNFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLI--ELNLGQNHF 231 (678)
Q Consensus 154 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~--~L~L~~n~l 231 (678)
++|.+++..|..+.++++|++|++++|.+.+..+..+. .+++|++|++++|.+++..+..++.+++|+ .|++++|.+
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l 191 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGF-PTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTC-CCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCccccc-CCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCcc
Confidence 99999987788899999999999999999864434444 589999999999999988888899999999 899999999
Q ss_pred eeccCCCCCCCC----------------------------------------------------CCCeEEcccCcccccC
Q 038612 232 TGKVSIDFNGLS----------------------------------------------------DLAWLSFEANNLGAEA 259 (678)
Q Consensus 232 ~~~~~~~~~~l~----------------------------------------------------~L~~L~l~~n~l~~~~ 259 (678)
++..+..+.. . +|+.|++++|.+....
T Consensus 192 ~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~ 270 (606)
T 3t6q_A 192 AGIEPGAFDS-AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNIS 270 (606)
T ss_dssp CEECTTTTTT-CEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCC
T ss_pred CccChhHhhh-ccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccC
Confidence 8887766543 2 3445555555554433
Q ss_pred CCCcccccccCCCCCCcEEEcccCCCCcccChhHhhccccCcEEEccCcceeccCCccCcCCccccccccccceeeeccC
Q 038612 260 SNDLDFVFSLTNCSKLEWLELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLIGTIP 339 (678)
Q Consensus 260 ~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 339 (678)
. ..+..+++|++|++++|.++ .+|..+..++. |++|++++|.+.+..|..+..+++|+.|++++|.+.+.+|
T Consensus 271 ~------~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 342 (606)
T 3t6q_A 271 S------NTFHCFSGLQELDLTATHLS-ELPSGLVGLST-LKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELG 342 (606)
T ss_dssp T------TTTTTCTTCSEEECTTSCCS-CCCSSCCSCTT-CCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCC
T ss_pred H------HHhccccCCCEEeccCCccC-CCChhhccccc-CCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccc
Confidence 2 24677888999999999887 67777777765 9999999999888888888889999999999998876665
Q ss_pred c-ccCCCcccceeeccCccccccC--CccccCCCCCcEEeccCCccCccCCCCCCCcCCCceEecCCCccccccCcc-cc
Q 038612 340 H-VIGSLKNLQLLYLYGNSLEGNI--PSSLGNLTLLTKLALDFNNLQGNIPSSLGSCQNLMELIVSHNKLNGTLPQQ-IL 415 (678)
Q Consensus 340 ~-~~~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~-~~ 415 (678)
. .+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..|..+..+++|+.|++++|++.+..|.. +.
T Consensus 343 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 422 (606)
T 3t6q_A 343 TGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQ 422 (606)
T ss_dssp SSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTT
T ss_pred hhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhh
Confidence 4 4888999999999999888765 677888999999999999998888888889999999999999988666544 66
Q ss_pred cccccceEEEcCCCcccccCCccccCcccCCeeecccCccccc---CCccccCCCCCCEEECcCCccccccCccccCCCC
Q 038612 416 EIRTLSFQLDLSNNLLSGYLPFRVGNLKNLARLDISMNHFFGE---IPATLSACTSLEYLYMQGNSFGGRIPLSLISLKS 492 (678)
Q Consensus 416 ~~~~l~~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 492 (678)
.++.+ +.|++++|.+.+..|..+..+++|++|++++|++.+. .+..+..+++|++|++++|++++..|..+..+++
T Consensus 423 ~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 501 (606)
T 3t6q_A 423 NLHLL-KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKM 501 (606)
T ss_dssp TCTTC-CEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred CcccC-CEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccC
Confidence 77777 8899999999988888889999999999999998763 3356888999999999999999888889999999
Q ss_pred CCEEECCCCcccccCCccCCCCCCCCEEeCCcCcceeeCCCC-CccCCCCceeccCCCCCccc
Q 038612 493 LKVLDLSRNNLSGKIPEYLENLPFLQYLDLSYNHFEGQVPAK-GVFHNKTSISLVGNENLCGG 554 (678)
Q Consensus 493 L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~~~l~~~~~~~n~~lc~~ 554 (678)
|+.|++++|++++..|+.+..++.| +|++++|++++..|.. ..+.+++.+++.+||+.|.+
T Consensus 502 L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 563 (606)
T 3t6q_A 502 MNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC 563 (606)
T ss_dssp CCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSG
T ss_pred CCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccC
Confidence 9999999999999889999999999 9999999998766643 44677889999999988864
No 4
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.3e-53 Score=472.41 Aligned_cols=499 Identities=17% Similarity=0.256 Sum_probs=309.3
Q ss_pred CCHHhHHHHHHHHhcCCCCCC--------CCCCCCCCCCCCCc---ccccccCCCCcEEEEEcCCCCCCCc--ccCCCCC
Q 038612 32 TNETDRLALLAIKSQFHDPLE--------VTSSWDTSVNLCQW---TGVTCGRRHQRVTELYLRNQSLGAD--IGYSSWS 98 (678)
Q Consensus 32 ~~~~~~~~l~~~~~~~~~~~~--------~~~~w~~~~~~c~w---~gv~c~~~~~~v~~l~l~~~~l~~~--~~~~~l~ 98 (678)
....|+.||.++++++.++.. ...+|+.+.++|.| .||+|+.. ++|+.++|+++.+.+. ..+++++
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L~ 105 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLT 105 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGCT
T ss_pred hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhcCc
Confidence 345799999999999875433 23479988999999 99999764 7899888877766543 3455566
Q ss_pred CCCEEECCCCCC------cc------ccChhhcCCccCcEEeccCCCCccCCCccCCCC-CCCCEEEcccccccccCccc
Q 038612 99 KLEKLSIAVNHL------RG------QLPASIGNLSALQAFDVGENTLHGRIPESLGQL-RSLKFLNVEENNFSGMVPVS 165 (678)
Q Consensus 99 ~L~~L~Ls~n~~------~~------~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l-~~L~~L~L~~n~l~~~~~~~ 165 (678)
+|++|+|++|.+ .+ .+|... +..|+ +++++|.+.+..|..+..+ ..+..+++....+.
T Consensus 106 ~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~------ 176 (636)
T 4eco_A 106 ELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIK------ 176 (636)
T ss_dssp TCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCC------
T ss_pred cceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCccccccc------
Confidence 666666666543 11 233322 34444 5555555555444444311 01111111100000
Q ss_pred ccCCCCCcEEECC--CCCCCccCChhhhcCCCCCCEEEcccCcCCCC-----------------CCccCc--CCCCCcEE
Q 038612 166 IYNISSLEMIFLP--ANRLEGILPLNIGFNLPNLKSLIVAQNNLTGP-----------------IPHSLS--NASNLIEL 224 (678)
Q Consensus 166 ~~~l~~L~~L~l~--~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~-----------------~~~~l~--~l~~L~~L 224 (678)
......++.+.+. .|.+++ +|..+. .+++|++|++++|.+++. +|..++ ++++|++|
T Consensus 177 ~~~~~~l~~l~l~~~~n~l~~-ip~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L 254 (636)
T 4eco_A 177 KSSRITLKDTQIGQLSNNITF-VSKAVM-RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDV 254 (636)
T ss_dssp CCCCCCCCTTTTTCCSCEEEE-ECGGGG-GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEE
T ss_pred cccccchhhhhhccccCCCcc-CCHHHh-cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEE
Confidence 0011112222221 345555 555554 566666666666666553 566666 66666666
Q ss_pred eccCCcceeccCCCCCCCCCCCeEEcccCc-ccc-cCCCCcccccccCCCCCCcEEEcccCCCCcccCh--hHhhccccC
Q 038612 225 NLGQNHFTGKVSIDFNGLSDLAWLSFEANN-LGA-EASNDLDFVFSLTNCSKLEWLELRKNQFGGNLPH--FIANLSKTM 300 (678)
Q Consensus 225 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~-~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~--~~~~~~~~L 300 (678)
++++|++.+.+|..+.++++|++|++++|. +++ ..+..+.....+..+++|++|++++|.++ .+|. .+..++. |
T Consensus 255 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~-L 332 (636)
T 4eco_A 255 EVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKK-L 332 (636)
T ss_dssp EEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTT-C
T ss_pred EecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCC-C
Confidence 666666666666666666666666666665 544 21111110111223366777777777776 6666 6666664 7
Q ss_pred cEEEccCcceeccCCccCcCCccccccccccceeeeccCcccCCCcc-cceeeccCccccccCCccccCCC--CCcEEec
Q 038612 301 TIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLIGTIPHVIGSLKN-LQLLYLYGNSLEGNIPSSLGNLT--LLTKLAL 377 (678)
Q Consensus 301 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~L 377 (678)
+.|++++|++.|.+| .+..+++|+.|++++|++. .+|..+..+++ |++|++++|.++ .+|..+..++ +|++|++
T Consensus 333 ~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~L 409 (636)
T 4eco_A 333 GMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDF 409 (636)
T ss_dssp CEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEEC
T ss_pred CEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEEC
Confidence 777777777777777 6777777777777777776 56666777777 777777777776 5666665544 6777777
Q ss_pred cCCccCccCCCCCC-------CcCCCceEecCCCccccccCccccc-ccccceEEEcCCCcccccCCccccCc-------
Q 038612 378 DFNNLQGNIPSSLG-------SCQNLMELIVSHNKLNGTLPQQILE-IRTLSFQLDLSNNLLSGYLPFRVGNL------- 442 (678)
Q Consensus 378 ~~n~l~~~~~~~~~-------~l~~L~~L~l~~n~l~~~~p~~~~~-~~~l~~~L~l~~n~l~~~~~~~~~~l------- 442 (678)
++|.+.+..|..+. .+++|+.|++++|++. .+|..++. ++.+ +.|++++|.++...+..+...
T Consensus 410 s~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L-~~L~Ls~N~l~~i~~~~~~~~~~~~~~l 487 (636)
T 4eco_A 410 SYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPL-SSINLMGNMLTEIPKNSLKDENENFKNT 487 (636)
T ss_dssp CSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCC-SEEECCSSCCSBCCSSSSEETTEECTTG
T ss_pred cCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCC-CEEECCCCCCCCcCHHHhcccccccccc
Confidence 77777777776666 6667777777777776 55555443 5555 677777777773333233222
Q ss_pred ccCCeeecccCcccccCCcccc--CCCCCCEEECcCCccccccCccccCCCCCCEEEC------CCCcccccCCccCCCC
Q 038612 443 KNLARLDISMNHFFGEIPATLS--ACTSLEYLYMQGNSFGGRIPLSLISLKSLKVLDL------SRNNLSGKIPEYLENL 514 (678)
Q Consensus 443 ~~L~~L~Ls~n~~~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l------s~n~l~~~~p~~l~~l 514 (678)
++|++|+|++|+++ .+|..+. .+++|++|+|++|++++ +|..+..+++|+.|++ ++|++.+.+|..+..+
T Consensus 488 ~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l 565 (636)
T 4eco_A 488 YLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLC 565 (636)
T ss_dssp GGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGC
T ss_pred CCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcC
Confidence 27777777777777 5666665 77777777777777776 6777777777777777 4566777777777777
Q ss_pred CCCCEEeCCcCcceeeCCCCCccCCCCceeccCCCCCcc
Q 038612 515 PFLQYLDLSYNHFEGQVPAKGVFHNKTSISLVGNENLCG 553 (678)
Q Consensus 515 ~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~n~~lc~ 553 (678)
++|++|++++|++ +.+|.. .+++++.+++.+|+..|-
T Consensus 566 ~~L~~L~Ls~N~l-~~ip~~-~~~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 566 PSLTQLQIGSNDI-RKVNEK-ITPNISVLDIKDNPNISI 602 (636)
T ss_dssp SSCCEEECCSSCC-CBCCSC-CCTTCCEEECCSCTTCEE
T ss_pred CCCCEEECCCCcC-CccCHh-HhCcCCEEECcCCCCccc
Confidence 7777777777777 566654 336777777777776653
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=9.9e-51 Score=453.01 Aligned_cols=466 Identities=20% Similarity=0.179 Sum_probs=402.7
Q ss_pred CcEEEEEcCCCCCCCcc--cCCCCCCCCEEECCCCCCccccChhhcCCccCcEEeccCCCCccCCCccCCCCCCCCEEEc
Q 038612 76 QRVTELYLRNQSLGADI--GYSSWSKLEKLSIAVNHLRGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNV 153 (678)
Q Consensus 76 ~~v~~l~l~~~~l~~~~--~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L 153 (678)
..++.++++++.+.+.. .+.++++|++|++++|.+++..|.+|.++++|++|++++|.+++..|..|+++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 67999999999987663 5889999999999999999988999999999999999999999888999999999999999
Q ss_pred ccccccccCcccccCCCCCcEEECCCCCCCc-cCChhhhcCCCCCCEEEcccCcCCCCCCccCcCCCCCc----EEeccC
Q 038612 154 EENNFSGMVPVSIYNISSLEMIFLPANRLEG-ILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLI----ELNLGQ 228 (678)
Q Consensus 154 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~-~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~----~L~L~~ 228 (678)
++|.+++..+..++++++|++|++++|.+.+ .+|..+. .+++|++|++++|.+++..+..++.+++|+ .|++++
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~ 190 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS-NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGG-TCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTT
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHh-hcCCCCEEEccCCcceecChhhhhhhhccccccceeeccC
Confidence 9999998777889999999999999999986 5688887 899999999999999988888887776655 899999
Q ss_pred CcceeccCCCCCCCCCCCeEEcccCccccc--------------------------------------------------
Q 038612 229 NHFTGKVSIDFNGLSDLAWLSFEANNLGAE-------------------------------------------------- 258 (678)
Q Consensus 229 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-------------------------------------------------- 258 (678)
|.+++..+..+... +|+.|++++|.+...
T Consensus 191 n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~ 269 (606)
T 3vq2_A 191 NPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLT 269 (606)
T ss_dssp CCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEEC
T ss_pred CCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecc
Confidence 99987777766655 899999999876410
Q ss_pred CC-CCcccccccCCCCCCcEEEcccCCCCcccChhHhhccccCcEEEccCcceeccCCccCcCCccccccccccceeeec
Q 038612 259 AS-NDLDFVFSLTNCSKLEWLELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLIGT 337 (678)
Q Consensus 259 ~~-~~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 337 (678)
.. ........+..+++|+.|++++|.+. .+| .+..++. |+.|++++|.+ +.+| .+ .+++|+.|++++|...+.
T Consensus 270 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~-L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~ 343 (606)
T 3vq2_A 270 YTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLE-DVPKHFK-WQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSIS 343 (606)
T ss_dssp CCTTCCGGGGSCGGGTTCSEEEEESCCCC-CCC-CCCTTCC-CSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEE
T ss_pred ccccccccccccccCCCCCEEEecCccch-hhh-hcccccc-CCEEEcccccC-cccc-cC-CCCccceeeccCCcCccc
Confidence 00 00011122666788999999999885 455 6666665 99999999999 6777 45 899999999999965544
Q ss_pred cCcccCCCcccceeeccCcccccc--CCccccCCCCCcEEeccCCccCccCCCCCCCcCCCceEecCCCccccccC-ccc
Q 038612 338 IPHVIGSLKNLQLLYLYGNSLEGN--IPSSLGNLTLLTKLALDFNNLQGNIPSSLGSCQNLMELIVSHNKLNGTLP-QQI 414 (678)
Q Consensus 338 ~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p-~~~ 414 (678)
. .+..+++|++|++++|.+.+. .|..+..+++|++|++++|.+.+ +|..+..+++|+.|++++|++.+..| ..+
T Consensus 344 ~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 420 (606)
T 3vq2_A 344 F--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAF 420 (606)
T ss_dssp C--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTT
T ss_pred h--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhh
Confidence 4 567899999999999999876 37888999999999999999885 66889999999999999999997777 577
Q ss_pred ccccccceEEEcCCCcccccCCccccCcccCCeeecccCcccc-cCCccccCCCCCCEEECcCCccccccCccccCCCCC
Q 038612 415 LEIRTLSFQLDLSNNLLSGYLPFRVGNLKNLARLDISMNHFFG-EIPATLSACTSLEYLYMQGNSFGGRIPLSLISLKSL 493 (678)
Q Consensus 415 ~~~~~l~~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 493 (678)
..++.+ +.|++++|.+.+..|..+..+++|++|++++|.+++ .+|..+..+++|++|++++|++++..|..+..+++|
T Consensus 421 ~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 499 (606)
T 3vq2_A 421 LSLEKL-LYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRL 499 (606)
T ss_dssp TTCTTC-CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred hccccC-CEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccC
Confidence 788888 899999999999999999999999999999999997 478889999999999999999999999999999999
Q ss_pred CEEECCCCcccccCCccCCCCCCCCEEeCCcCcceeeCCCC-CccC-CCCceeccCCCCCccc
Q 038612 494 KVLDLSRNNLSGKIPEYLENLPFLQYLDLSYNHFEGQVPAK-GVFH-NKTSISLVGNENLCGG 554 (678)
Q Consensus 494 ~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~~-~l~~~~~~~n~~lc~~ 554 (678)
++|++++|++++..|..+..+++|++|++++|+++ .+|.. ..++ +++.+++.+||+.|.+
T Consensus 500 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c 561 (606)
T 3vq2_A 500 QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACIC 561 (606)
T ss_dssp CEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSS
T ss_pred CEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCC
Confidence 99999999999999999999999999999999998 45543 3343 5899999999999875
No 6
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=6.8e-52 Score=468.32 Aligned_cols=457 Identities=20% Similarity=0.240 Sum_probs=349.1
Q ss_pred CCCCCCHHhHHHHHHHHhcCCCCCCCCCCCCCCC-----CC--CCc------------ccccccCCCCcEEEEEcCCCCC
Q 038612 28 FSVHTNETDRLALLAIKSQFHDPLEVTSSWDTSV-----NL--CQW------------TGVTCGRRHQRVTELYLRNQSL 88 (678)
Q Consensus 28 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~-----~~--c~w------------~gv~c~~~~~~v~~l~l~~~~l 88 (678)
.+.++..+|+.||++||+++.+| +|+... ++ |.| .||.|+. .++|+.|+|+++++
T Consensus 262 ~~~~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L 335 (876)
T 4ecn_A 262 KETAEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGA 335 (876)
T ss_dssp CCCCHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCC
T ss_pred cccccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCC
Confidence 34455678999999999999877 675443 55 999 9999986 58999999999999
Q ss_pred CCc--ccCCCCCCCCEEEC-CCCCCccccChhh-----------------------------------------------
Q 038612 89 GAD--IGYSSWSKLEKLSI-AVNHLRGQLPASI----------------------------------------------- 118 (678)
Q Consensus 89 ~~~--~~~~~l~~L~~L~L-s~n~~~~~~~~~l----------------------------------------------- 118 (678)
.+. +.++++++|++|+| ++|.+.|..|-..
T Consensus 336 ~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~ 415 (876)
T 4ecn_A 336 KGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMK 415 (876)
T ss_dssp EEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSC
T ss_pred CCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccc
Confidence 875 56899999999999 8887766522110
Q ss_pred ----cCCccCcEEecc--CCCCccCCCccCCCCCCCCEEEcccccccc-----------------cCccccc--CCCCCc
Q 038612 119 ----GNLSALQAFDVG--ENTLHGRIPESLGQLRSLKFLNVEENNFSG-----------------MVPVSIY--NISSLE 173 (678)
Q Consensus 119 ----~~l~~L~~L~ls--~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-----------------~~~~~~~--~l~~L~ 173 (678)
.....++.+.+. .|.+++ +|..|+++++|++|+|++|.+++ .+|..++ ++++|+
T Consensus 416 ~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~ 494 (876)
T 4ecn_A 416 PIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLT 494 (876)
T ss_dssp CCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCC
T ss_pred ccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCC
Confidence 111233333343 367776 78888899999999999999887 3788877 899999
Q ss_pred EEECCCCCCCccCChhhhcCCCCCCEEEcccCc-CCC-CCCccCcCC-------CCCcEEeccCCcceeccCC--CCCCC
Q 038612 174 MIFLPANRLEGILPLNIGFNLPNLKSLIVAQNN-LTG-PIPHSLSNA-------SNLIELNLGQNHFTGKVSI--DFNGL 242 (678)
Q Consensus 174 ~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~-l~~-~~~~~l~~l-------~~L~~L~L~~n~l~~~~~~--~~~~l 242 (678)
+|+|++|.+.+.+|..+. .+++|++|++++|+ +++ .+|..++++ ++|+.|++++|+++ .+|. .+..+
T Consensus 495 ~L~Ls~N~l~~~iP~~l~-~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L 572 (876)
T 4ecn_A 495 DVELYNCPNMTQLPDFLY-DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKM 572 (876)
T ss_dssp EEEEESCTTCCSCCGGGG-GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTC
T ss_pred EEECcCCCCCccChHHHh-CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcC
Confidence 999999988888888777 88899999999997 887 677655544 48999999999888 6777 78889
Q ss_pred CCCCeEEcccCcccccCCCCcccccccCCCCCCcEEEcccCCCCcccChhHhhccccCcEEEccCcceeccCCccCcCCc
Q 038612 243 SDLAWLSFEANNLGAEASNDLDFVFSLTNCSKLEWLELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLV 322 (678)
Q Consensus 243 ~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~ 322 (678)
++|+.|++++|.+... + .+..+++|+.|++++|.+. .+|..+..++.+|+.|++++|.++ .+|..+..++
T Consensus 573 ~~L~~L~Ls~N~l~~l-------p-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~ 642 (876)
T 4ecn_A 573 VKLGLLDCVHNKVRHL-------E-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKS 642 (876)
T ss_dssp TTCCEEECTTSCCCBC-------C-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTC
T ss_pred CCCCEEECCCCCcccc-------h-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccc
Confidence 9999999999887732 2 5778888999999999988 888888887755999999999988 7787777665
Q ss_pred c--ccccccccceeeeccCcc---cC--CCcccceeeccCccccccCCccc-cCCCCCcEEeccCCccCccCCCCCCC--
Q 038612 323 N--LNLFSLHLNQLIGTIPHV---IG--SLKNLQLLYLYGNSLEGNIPSSL-GNLTLLTKLALDFNNLQGNIPSSLGS-- 392 (678)
Q Consensus 323 ~--L~~L~l~~n~~~~~~~~~---~~--~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~-- 392 (678)
. |+.|++++|++.+.+|.. +. .+++|++|++++|.+. .+|..+ ..+++|++|++++|.+. .+|..+..
T Consensus 643 ~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~ 720 (876)
T 4ecn_A 643 VYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPK 720 (876)
T ss_dssp SSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCT
T ss_pred cCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccc
Confidence 4 999999999988766532 22 3458999999999998 455544 58999999999999998 55554332
Q ss_pred ------cCCCceEecCCCccccccCcccc--cccccceEEEcCCCcccccCCccccCcccCCeeecccCcccccCCcccc
Q 038612 393 ------CQNLMELIVSHNKLNGTLPQQIL--EIRTLSFQLDLSNNLLSGYLPFRVGNLKNLARLDISMNHFFGEIPATLS 464 (678)
Q Consensus 393 ------l~~L~~L~l~~n~l~~~~p~~~~--~~~~l~~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~ 464 (678)
+++|+.|++++|++. .+|..+. .++.+ +.|++++|.+++ +|..+..+++|+.|+|++|+
T Consensus 721 ~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L-~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~---------- 787 (876)
T 4ecn_A 721 DGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYL-SNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR---------- 787 (876)
T ss_dssp TSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTC-CEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB----------
T ss_pred cccccccCCccEEECCCCCCc-cchHHhhhccCCCc-CEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC----------
Confidence 349999999999998 7888876 77777 778888888887 67777788888888887754
Q ss_pred CCCCCCEEECcCCccccccCccccCCCCCCEEECCCCcccccCCccCCCCCCCCEEeCCcCccee
Q 038612 465 ACTSLEYLYMQGNSFGGRIPLSLISLKSLKVLDLSRNNLSGKIPEYLENLPFLQYLDLSYNHFEG 529 (678)
Q Consensus 465 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~ 529 (678)
++++|++.+.+|..+..+++|+.|+|++|++ +.+|..+. ++|+.|+|++|++..
T Consensus 788 --------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 788 --------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNIS 841 (876)
T ss_dssp --------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCE
T ss_pred --------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCc
Confidence 3344555566666666666666666666666 35555443 466666666666553
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.9e-50 Score=455.28 Aligned_cols=472 Identities=22% Similarity=0.256 Sum_probs=294.8
Q ss_pred CcEEEEEcCCCCCCCcc--cCCCCCCCCEEECCCCCCccccChhhcCCccCcEEeccCCCCccCCCccCCCCCCCCEEEc
Q 038612 76 QRVTELYLRNQSLGADI--GYSSWSKLEKLSIAVNHLRGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNV 153 (678)
Q Consensus 76 ~~v~~l~l~~~~l~~~~--~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L 153 (678)
.+++.++++++.+.+.. .+.++++|++|++++|.+.+..|..+.++++|++|++++|.+++..+..|+++++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 45677777777666542 3566666666666666666666666666666666666666666443345666666666666
Q ss_pred ccccccccCcccccCCCCCcEEECCCCCCCccCChhhhcCCCCCCEEEcccCcCCCCCCccCc--CCCCCcEEeccCCcc
Q 038612 154 EENNFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLS--NASNLIELNLGQNHF 231 (678)
Q Consensus 154 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L~L~~n~l 231 (678)
++|.+++..|..|+++++|++|++++|.+++..|..+. .+++|++|++++|.+++..+..+. .+++|++|++++|++
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQV-QLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSS-CCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhc-ccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence 66666655555666666666666666666554444443 555555555555555443333221 223334444433333
Q ss_pred eeccC---------------------------------------------------CCCCCCCC--CCeEEcccCccccc
Q 038612 232 TGKVS---------------------------------------------------IDFNGLSD--LAWLSFEANNLGAE 258 (678)
Q Consensus 232 ~~~~~---------------------------------------------------~~~~~l~~--L~~L~l~~n~l~~~ 258 (678)
++..+ ..+..++. |+.|++++|.+...
T Consensus 184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~ 263 (680)
T 1ziw_A 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263 (680)
T ss_dssp CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE
T ss_pred cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCcc
Confidence 33222 22222211 33333333333322
Q ss_pred CCCCcccccccCCCCCCcEEEcccCCCCcccChhHhhcc--------------------------------ccCcEEEcc
Q 038612 259 ASNDLDFVFSLTNCSKLEWLELRKNQFGGNLPHFIANLS--------------------------------KTMTIIDMG 306 (678)
Q Consensus 259 ~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~~~~--------------------------------~~L~~L~L~ 306 (678)
.+ ..+..+++|++|++++|.+.+..|..+..++ .+|+.|+++
T Consensus 264 ~~------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~ 337 (680)
T 1ziw_A 264 GN------DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNME 337 (680)
T ss_dssp CT------TTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECC
T ss_pred Cc------ccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECC
Confidence 21 1233444444444444444433332222211 124444444
Q ss_pred CcceeccCCccCcCCccc----------------------------cccccccceeeeccCcccCCCcccceeeccCccc
Q 038612 307 ENKLSGTIPLGIGNLVNL----------------------------NLFSLHLNQLIGTIPHVIGSLKNLQLLYLYGNSL 358 (678)
Q Consensus 307 ~n~l~~~~~~~l~~l~~L----------------------------~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l 358 (678)
+|.+.+..+..+..+++| +.|++++|++.+..|..+..+++|++|++++|.+
T Consensus 338 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 417 (680)
T 1ziw_A 338 DNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEI 417 (680)
T ss_dssp SCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcC
Confidence 444444444444444433 3444444555555556666666777777777766
Q ss_pred cccCC-ccccCCCCCcEEeccCCccCccCCCCCCCcCCCceEecCCCccc--cccCcccccccccceEEEcCCCcccccC
Q 038612 359 EGNIP-SSLGNLTLLTKLALDFNNLQGNIPSSLGSCQNLMELIVSHNKLN--GTLPQQILEIRTLSFQLDLSNNLLSGYL 435 (678)
Q Consensus 359 ~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~p~~~~~~~~l~~~L~l~~n~l~~~~ 435 (678)
.+.+| ..+.++++|++|++++|++.+..+..|..+++|+.|++++|.+. +.+|..+..++.+ +.|++++|.+++..
T Consensus 418 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L-~~L~Ls~N~l~~i~ 496 (680)
T 1ziw_A 418 GQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL-TILDLSNNNIANIN 496 (680)
T ss_dssp EEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTC-CEEECCSSCCCCCC
T ss_pred ccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCC-CEEECCCCCCCcCC
Confidence 65444 45666677777777777766666666777777777777777665 4567777778887 78999999998888
Q ss_pred CccccCcccCCeeecccCcccccCC--------ccccCCCCCCEEECcCCccccccCccccCCCCCCEEECCCCcccccC
Q 038612 436 PFRVGNLKNLARLDISMNHFFGEIP--------ATLSACTSLEYLYMQGNSFGGRIPLSLISLKSLKVLDLSRNNLSGKI 507 (678)
Q Consensus 436 ~~~~~~l~~L~~L~Ls~n~~~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~ 507 (678)
+..+..+++|++|++++|++++..+ ..+..+++|++|+|++|+++...+..|.++++|+.|++++|++++..
T Consensus 497 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~ 576 (680)
T 1ziw_A 497 DDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLP 576 (680)
T ss_dssp TTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred hhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCC
Confidence 8888889999999999998875422 23778899999999999998665667889999999999999999777
Q ss_pred CccCCCCCCCCEEeCCcCcceeeCCCC-C-ccCCCCceeccCCCCCcccC
Q 038612 508 PEYLENLPFLQYLDLSYNHFEGQVPAK-G-VFHNKTSISLVGNENLCGGL 555 (678)
Q Consensus 508 p~~l~~l~~L~~L~l~~n~l~~~~p~~-~-~~~~l~~~~~~~n~~lc~~~ 555 (678)
+..|..+++|+.|++++|++++..|.. . .+.+++.+++.+||+.|.+.
T Consensus 577 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 577 ASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp TTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred HhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 777889999999999999998765532 1 46788999999999999763
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.2e-49 Score=442.18 Aligned_cols=450 Identities=20% Similarity=0.175 Sum_probs=403.7
Q ss_pred CCCcEEEEEcCCCCCCCc--ccCCCCCCCCEEECCCCCCccccChhhcCCccCcEEeccCCCCccCCCccCCCCCCCCEE
Q 038612 74 RHQRVTELYLRNQSLGAD--IGYSSWSKLEKLSIAVNHLRGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFL 151 (678)
Q Consensus 74 ~~~~v~~l~l~~~~l~~~--~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L 151 (678)
....++.|+++++.+.+. ..|..+++|++|++++|.+.+..|..|+++++|++|++++|.+++..|..|+++++|++|
T Consensus 55 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L 134 (606)
T 3t6q_A 55 RLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESL 134 (606)
T ss_dssp TCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEE
T ss_pred cCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEE
Confidence 346899999999988765 458999999999999999999999999999999999999999997778889999999999
Q ss_pred EcccccccccCcccccCCCCCcEEECCCCCCCccCChhhhcCCCCCC--EEEcccCcCCCCCCccCcCC-----------
Q 038612 152 NVEENNFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLK--SLIVAQNNLTGPIPHSLSNA----------- 218 (678)
Q Consensus 152 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~--~L~l~~n~l~~~~~~~l~~l----------- 218 (678)
++++|.+++..+..+..+++|++|++++|.+++..|..+. .+++|+ +|++++|.+++..|..+...
T Consensus 135 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~ 213 (606)
T 3t6q_A 135 YLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMS-SLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQ 213 (606)
T ss_dssp ECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHH-TTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCS
T ss_pred ECCCCcccccCcccccCCcccCEEEcccCcccccChhhhh-hhcccceeEEecCCCccCccChhHhhhccccccccCCch
Confidence 9999999975545566699999999999999977677676 899999 99999999987776655431
Q ss_pred ----------------------------------------CCCcEEeccCCcceeccCCCCCCCCCCCeEEcccCccccc
Q 038612 219 ----------------------------------------SNLIELNLGQNHFTGKVSIDFNGLSDLAWLSFEANNLGAE 258 (678)
Q Consensus 219 ----------------------------------------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 258 (678)
.+|+.|++++|.+++..+..|..+++|++|++++|.+...
T Consensus 214 ~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~l 293 (606)
T 3t6q_A 214 NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSEL 293 (606)
T ss_dssp CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCC
T ss_pred hHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCC
Confidence 1678888999999888888899999999999999998743
Q ss_pred CCCCcccccccCCCCCCcEEEcccCCCCcccChhHhhccccCcEEEccCcceeccCCcc-CcCCccccccccccceeeec
Q 038612 259 ASNDLDFVFSLTNCSKLEWLELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLG-IGNLVNLNLFSLHLNQLIGT 337 (678)
Q Consensus 259 ~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n~~~~~ 337 (678)
+..+..+++|++|++++|.+.+..|..+..++. |+.|++++|.+.+.++.. +..+++|+.|++++|.+.+.
T Consensus 294 -------p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 365 (606)
T 3t6q_A 294 -------PSGLVGLSTLKKLVLSANKFENLCQISASNFPS-LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETS 365 (606)
T ss_dssp -------CSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTT-CSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEE
T ss_pred -------ChhhcccccCCEEECccCCcCcCchhhhhccCc-CCEEECCCCCcccccchhhhhccCcCCEEECCCCccccc
Confidence 346788999999999999999888888888886 999999999998777654 89999999999999999877
Q ss_pred c--CcccCCCcccceeeccCccccccCCccccCCCCCcEEeccCCccCccCCC-CCCCcCCCceEecCCCccccccCccc
Q 038612 338 I--PHVIGSLKNLQLLYLYGNSLEGNIPSSLGNLTLLTKLALDFNNLQGNIPS-SLGSCQNLMELIVSHNKLNGTLPQQI 414 (678)
Q Consensus 338 ~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~p~~~ 414 (678)
. +..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+. .+..+++|++|++++|.+.+..|..+
T Consensus 366 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 445 (606)
T 3t6q_A 366 DCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF 445 (606)
T ss_dssp EESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTT
T ss_pred cCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHH
Confidence 6 77899999999999999999998899999999999999999999877654 48899999999999999998888888
Q ss_pred ccccccceEEEcCCCccccc---CCccccCcccCCeeecccCcccccCCccccCCCCCCEEECcCCccccccCccccCCC
Q 038612 415 LEIRTLSFQLDLSNNLLSGY---LPFRVGNLKNLARLDISMNHFFGEIPATLSACTSLEYLYMQGNSFGGRIPLSLISLK 491 (678)
Q Consensus 415 ~~~~~l~~~L~l~~n~l~~~---~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 491 (678)
..++.+ +.|++++|.+.+. .+..+..+++|++|++++|++++..|..|..+++|++|+|++|++++..|..+..++
T Consensus 446 ~~l~~L-~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~ 524 (606)
T 3t6q_A 446 DGLPAL-QHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLK 524 (606)
T ss_dssp TTCTTC-CEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCC
T ss_pred hCCCCC-CEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccc
Confidence 889988 8999999999873 336688999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEECCCCcccccCCccCCCCCCCCEEeCCcCcceeeCCCC
Q 038612 492 SLKVLDLSRNNLSGKIPEYLENLPFLQYLDLSYNHFEGQVPAK 534 (678)
Q Consensus 492 ~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~ 534 (678)
.| .|++++|++++..|..+..+++|+.|++++|++.|.++..
T Consensus 525 ~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 566 (606)
T 3t6q_A 525 GI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNI 566 (606)
T ss_dssp SC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGH
T ss_pred cc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcH
Confidence 99 9999999999998988999999999999999999987743
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=6.5e-50 Score=461.00 Aligned_cols=479 Identities=20% Similarity=0.205 Sum_probs=381.4
Q ss_pred CCCcccccccCCCCcEEEEEcCCCCCCCc--ccCCCCCCCCEEECCCCCCcccc-ChhhcCCccCcEEeccCCCCccCCC
Q 038612 63 LCQWTGVTCGRRHQRVTELYLRNQSLGAD--IGYSSWSKLEKLSIAVNHLRGQL-PASIGNLSALQAFDVGENTLHGRIP 139 (678)
Q Consensus 63 ~c~w~gv~c~~~~~~v~~l~l~~~~l~~~--~~~~~l~~L~~L~Ls~n~~~~~~-~~~l~~l~~L~~L~ls~n~l~~~~p 139 (678)
.|.|..|.+ ....++.|+|++|.+.+. ..+.++++|++|+|++|...+.+ |.+|.++++|++|+|++|.+.+..|
T Consensus 13 ~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p 90 (844)
T 3j0a_A 13 FCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP 90 (844)
T ss_dssp CCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT
T ss_pred CCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH
Confidence 356777777 457899999999998764 46899999999999999666555 7889999999999999999998889
Q ss_pred ccCCCCCCCCEEEcccccccccCccc--ccCCCCCcEEECCCCCCCccCChhhhcCCCCCCEEEcccCcCCCCCCccCcC
Q 038612 140 ESLGQLRSLKFLNVEENNFSGMVPVS--IYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSN 217 (678)
Q Consensus 140 ~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~ 217 (678)
..|.++++|++|+|++|.+++..|.. +.++++|++|++++|.+++..+...+..+++|++|++++|.+++..+..+..
T Consensus 91 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~ 170 (844)
T 3j0a_A 91 DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP 170 (844)
T ss_dssp TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH
T ss_pred hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc
Confidence 99999999999999999998766665 8999999999999999987766443449999999999999999888888887
Q ss_pred C--CCCcEEeccCCcceeccCCCCCCCCC------CCeEEcccCcccccCCCCccc------------------------
Q 038612 218 A--SNLIELNLGQNHFTGKVSIDFNGLSD------LAWLSFEANNLGAEASNDLDF------------------------ 265 (678)
Q Consensus 218 l--~~L~~L~L~~n~l~~~~~~~~~~l~~------L~~L~l~~n~l~~~~~~~~~~------------------------ 265 (678)
+ ++|+.|++++|.+.+..+..+..+++ |+.|++++|.+....+..+.-
T Consensus 171 l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~ 250 (844)
T 3j0a_A 171 LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH 250 (844)
T ss_dssp HHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCS
T ss_pred ccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccccc
Confidence 7 89999999999999888887776665 999999999766543321110
Q ss_pred ------ccccCC--CCCCcEEEcccCCCCcccChhHhhccccCcEEEccCcceeccCCccCcCCccccccccccceeeec
Q 038612 266 ------VFSLTN--CSKLEWLELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLIGT 337 (678)
Q Consensus 266 ------~~~l~~--~~~L~~L~L~~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 337 (678)
...+.. .++|+.|++++|.+.+..|..+..++. |+.|++++|++.+..|..+..+++|+.|++++|.+.+.
T Consensus 251 ~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 329 (844)
T 3j0a_A 251 NIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKD-LKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL 329 (844)
T ss_dssp SSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCC-CCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCC
T ss_pred ccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCC-CCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCcc
Confidence 001122 267888888888888777777777765 88888888888888888888888888888888888877
Q ss_pred cCcccCCCcccceeeccCccccccCCccccCCCCCcEEeccCCccCccCCCCCCCcCCCceEecCCCccccccCcc----
Q 038612 338 IPHVIGSLKNLQLLYLYGNSLEGNIPSSLGNLTLLTKLALDFNNLQGNIPSSLGSCQNLMELIVSHNKLNGTLPQQ---- 413 (678)
Q Consensus 338 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~---- 413 (678)
.|..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++. + .+++|+.|++++|++. .+|..
T Consensus 330 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~----~~~~L~~L~l~~N~l~-~l~~~~~~l 403 (844)
T 3j0a_A 330 YSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-H----FIPSIPDIFLSGNKLV-TLPKINLTA 403 (844)
T ss_dssp CSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-S----SCCSCSEEEEESCCCC-CCCCCCTTC
T ss_pred CHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-c----CCCCcchhccCCCCcc-ccccccccc
Confidence 788888888888888888888777777788888888888888887742 1 2455555555555554 23321
Q ss_pred ------------------cccccccceEEEcCCCcccccCCc-cccCcccCCeeecccCccc-----ccCCccccCCCCC
Q 038612 414 ------------------ILEIRTLSFQLDLSNNLLSGYLPF-RVGNLKNLARLDISMNHFF-----GEIPATLSACTSL 469 (678)
Q Consensus 414 ------------------~~~~~~l~~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~~~-----~~~~~~~~~l~~L 469 (678)
+..++.+ +.|++++|.+++..+. .+..+++|+.|+|++|.++ +..+..|..+++|
T Consensus 404 ~~L~ls~N~l~~l~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L 482 (844)
T 3j0a_A 404 NLIHLSENRLENLDILYFLLRVPHL-QILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHL 482 (844)
T ss_dssp CEEECCSCCCCSSTTHHHHTTCTTC-CEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCE
T ss_pred ceeecccCccccCchhhhhhcCCcc-ceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccc
Confidence 2355666 6788888888765433 3456788888888888886 3445668888999
Q ss_pred CEEECcCCccccccCccccCCCCCCEEECCCCcccccCCccCCCCCCCCEEeCCcCcceeeCCCCCccCCCCceeccCCC
Q 038612 470 EYLYMQGNSFGGRIPLSLISLKSLKVLDLSRNNLSGKIPEYLENLPFLQYLDLSYNHFEGQVPAKGVFHNKTSISLVGNE 549 (678)
Q Consensus 470 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~n~ 549 (678)
+.|+|++|++++..|..|.++++|+.|+|++|++++..|..+. ++|+.|++++|++++..|.. +.+++.+++.+||
T Consensus 483 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np 558 (844)
T 3j0a_A 483 QVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNK 558 (844)
T ss_dssp ECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEEC
T ss_pred cEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCC
Confidence 9999999999988888899999999999999999987777665 88999999999999887754 6789999999999
Q ss_pred CCcccC
Q 038612 550 NLCGGL 555 (678)
Q Consensus 550 ~lc~~~ 555 (678)
+.|.+.
T Consensus 559 ~~C~c~ 564 (844)
T 3j0a_A 559 FICECE 564 (844)
T ss_dssp CCCSSS
T ss_pred cccccc
Confidence 999653
No 10
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.5e-47 Score=433.20 Aligned_cols=456 Identities=21% Similarity=0.234 Sum_probs=320.9
Q ss_pred cEEEEEcCCCCCCCcc--cCCCCCCCCEEECCCCCCccccChhhcCCccCcEEeccCCCCccCCCccCCCCCCCCEEEcc
Q 038612 77 RVTELYLRNQSLGADI--GYSSWSKLEKLSIAVNHLRGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVE 154 (678)
Q Consensus 77 ~v~~l~l~~~~l~~~~--~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~ 154 (678)
.++.|+++++.+...+ .+..+++|++|++++|.+.+..|..|.++++|++|++++|.+++..|..+.++++|++|+++
T Consensus 74 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 153 (680)
T 1ziw_A 74 MLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLS 153 (680)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECC
T ss_pred CcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEcc
Confidence 3444445444444332 24455555555555555554444455555555555555555555545555555555555555
Q ss_pred cccccccCccccc--CCCCCcEEECCCCCCCccCChhhhc--------------------------CCCCCCEEEcccCc
Q 038612 155 ENNFSGMVPVSIY--NISSLEMIFLPANRLEGILPLNIGF--------------------------NLPNLKSLIVAQNN 206 (678)
Q Consensus 155 ~n~l~~~~~~~~~--~l~~L~~L~l~~n~~~~~~p~~~~~--------------------------~l~~L~~L~l~~n~ 206 (678)
+|.+++..+..+. .+++|++|++++|.+++..|..+.. ..++|++|++++|.
T Consensus 154 ~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~ 233 (680)
T 1ziw_A 154 NNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ 233 (680)
T ss_dssp SSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSC
T ss_pred CCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCc
Confidence 5555544443332 3345555555555544433322210 01233333333333
Q ss_pred CCCCCCccCcCCC--CCcEEeccCCcceeccCCCCCCCCCCCeEEcccCcccccCCCCcc--------------------
Q 038612 207 LTGPIPHSLSNAS--NLIELNLGQNHFTGKVSIDFNGLSDLAWLSFEANNLGAEASNDLD-------------------- 264 (678)
Q Consensus 207 l~~~~~~~l~~l~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-------------------- 264 (678)
+++..|..+..++ +|++|++++|++++..+..|..+++|++|++++|.+....+..+.
T Consensus 234 l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~ 313 (680)
T 1ziw_A 234 LSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS 313 (680)
T ss_dssp CCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC---
T ss_pred ccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccc
Confidence 3333334444443 266666666666666666666666666666666665544332110
Q ss_pred ---cc----cccCCCCCCcEEEcccCCCCcccChhHhhccc---------------------------cCcEEEccCcce
Q 038612 265 ---FV----FSLTNCSKLEWLELRKNQFGGNLPHFIANLSK---------------------------TMTIIDMGENKL 310 (678)
Q Consensus 265 ---~~----~~l~~~~~L~~L~L~~n~~~~~~p~~~~~~~~---------------------------~L~~L~L~~n~l 310 (678)
++ ..+..+++|++|++++|.+.+..+..+..++. .|+.|++++|++
T Consensus 314 ~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l 393 (680)
T 1ziw_A 314 LASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKI 393 (680)
T ss_dssp ---CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCC
T ss_pred cccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCC
Confidence 01 14566777888888888777666655554432 366666677777
Q ss_pred eccCCccCcCCccccccccccceeeeccC-cccCCCcccceeeccCccccccCCccccCCCCCcEEeccCCccC--ccCC
Q 038612 311 SGTIPLGIGNLVNLNLFSLHLNQLIGTIP-HVIGSLKNLQLLYLYGNSLEGNIPSSLGNLTLLTKLALDFNNLQ--GNIP 387 (678)
Q Consensus 311 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~ 387 (678)
++..|..+..+++|+.|++++|.+.+.+| ..+..+++|++|++++|++.+..+..+..+++|++|++++|.+. +..|
T Consensus 394 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p 473 (680)
T 1ziw_A 394 SKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSP 473 (680)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSS
T ss_pred CeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCC
Confidence 77788889999999999999999988766 68899999999999999999888899999999999999999986 5688
Q ss_pred CCCCCcCCCceEecCCCccccccCcccccccccceEEEcCCCcccccCC--------ccccCcccCCeeecccCcccccC
Q 038612 388 SSLGSCQNLMELIVSHNKLNGTLPQQILEIRTLSFQLDLSNNLLSGYLP--------FRVGNLKNLARLDISMNHFFGEI 459 (678)
Q Consensus 388 ~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~L~l~~n~l~~~~~--------~~~~~l~~L~~L~Ls~n~~~~~~ 459 (678)
..+..+++|+.|++++|++.+..+..+..++.+ +.|++++|.+++..+ ..+..+++|++|+|++|+++...
T Consensus 474 ~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~ 552 (680)
T 1ziw_A 474 SPFQPLRNLTILDLSNNNIANINDDMLEGLEKL-EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIP 552 (680)
T ss_dssp CTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCC
T ss_pred cccccCCCCCEEECCCCCCCcCChhhhcccccc-CEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCC
Confidence 899999999999999999997666678888888 899999999986532 24788999999999999999555
Q ss_pred CccccCCCCCCEEECcCCccccccCccccCCCCCCEEECCCCcccccCCccCC-CCCCCCEEeCCcCcceeeCCC
Q 038612 460 PATLSACTSLEYLYMQGNSFGGRIPLSLISLKSLKVLDLSRNNLSGKIPEYLE-NLPFLQYLDLSYNHFEGQVPA 533 (678)
Q Consensus 460 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~-~l~~L~~L~l~~n~l~~~~p~ 533 (678)
+..|..+++|++|+|++|++++..+..|..+++|+.|++++|++++..|..+. .+++|+.+++++|++.|.++.
T Consensus 553 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 553 VEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred HHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 56799999999999999999988888889999999999999999988887777 789999999999999998875
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.5e-48 Score=428.65 Aligned_cols=466 Identities=21% Similarity=0.215 Sum_probs=285.5
Q ss_pred CcEEEEEcCCCCCCCc--ccCCCCCCCCEEECCCCCCccccChhhcCCccCcEEeccCCCCccCCCccCCCCCCCCEEEc
Q 038612 76 QRVTELYLRNQSLGAD--IGYSSWSKLEKLSIAVNHLRGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNV 153 (678)
Q Consensus 76 ~~v~~l~l~~~~l~~~--~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L 153 (678)
..++.++++++.+.+. ..+..+++|++|++++|.+.+..+..|.++++|++|++++|.+++..|..|.++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 5788999999998765 36889999999999999999888889999999999999999999888889999999999999
Q ss_pred ccccccccCcccccCCCCCcEEECCCCCCCc-cCChhhhcCCCCCCEEEcccCcCCCCCCccCcCCCCC----cEEeccC
Q 038612 154 EENNFSGMVPVSIYNISSLEMIFLPANRLEG-ILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNL----IELNLGQ 228 (678)
Q Consensus 154 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~-~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L----~~L~L~~ 228 (678)
++|.++...+..++++++|++|++++|.+++ .+|..+. .+++|++|++++|.+++..+..++.+++| +.|++++
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~ 186 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS-NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGG-GCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhc-ccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCC
Confidence 9999987666679999999999999999986 4688877 89999999999999998888888888888 8999999
Q ss_pred CcceeccCCCCCCCCCCCeEEcccCcccccCC-----------------------CCcc-c-ccccCCCC--CCcEEEcc
Q 038612 229 NHFTGKVSIDFNGLSDLAWLSFEANNLGAEAS-----------------------NDLD-F-VFSLTNCS--KLEWLELR 281 (678)
Q Consensus 229 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----------------------~~~~-~-~~~l~~~~--~L~~L~L~ 281 (678)
|.+.+..+..+... +|+.|++++|....... .... + ...+..+. .++.++++
T Consensus 187 n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~ 265 (570)
T 2z63_A 187 NPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265 (570)
T ss_dssp CCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEE
T ss_pred CCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhh
Confidence 99998888877766 79999888773211000 0000 0 00000000 12333444
Q ss_pred cC-CCCcccChhHhhccccCcEEEccCcceeccCCccCcCCccccccccccceeeeccCcccCCCcccceeeccCccccc
Q 038612 282 KN-QFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLIGTIPHVIGSLKNLQLLYLYGNSLEG 360 (678)
Q Consensus 282 ~n-~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 360 (678)
++ .+.+..|..+..++. |+.|++++|.+. .+|..+..+ +|+.|++++|.+. .+|. ..+++|++|++++|.+.+
T Consensus 266 ~~~~~~~~~~~~~~~l~~-L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~ 339 (570)
T 2z63_A 266 YLDYYLDDIIDLFNCLTN-VSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGN 339 (570)
T ss_dssp ETTEEESCSTTTTGGGTT-CSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCC
T ss_pred cchhhhhhchhhhcCcCc-ccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccc
Confidence 33 333444444444443 555555555554 344444444 5555555555544 2222 244455555555554443
Q ss_pred cCCccccCCCCCcEEeccCCccCccC--CCCCCCcCCCceEecCCCccccccCcccccccccceEEEcCCCcccccCC-c
Q 038612 361 NIPSSLGNLTLLTKLALDFNNLQGNI--PSSLGSCQNLMELIVSHNKLNGTLPQQILEIRTLSFQLDLSNNLLSGYLP-F 437 (678)
Q Consensus 361 ~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~L~l~~n~l~~~~~-~ 437 (678)
..+. ..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+ +|..+..++.+ +.|++++|.+.+..+ .
T Consensus 340 ~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~l~~L-~~L~l~~n~l~~~~~~~ 415 (570)
T 2z63_A 340 AFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQL-EHLDFQHSNLKQMSEFS 415 (570)
T ss_dssp BCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-EEEEEETCTTC-CEEECTTSEEESCTTSC
T ss_pred cccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc-ccccccccCCC-CEEEccCCccccccchh
Confidence 3332 34455555555555544322 3334444555555555555442 22224444444 445555555544433 2
Q ss_pred cccCcccCCeeecccCcccccCCccccCCCCCCEEECcCCccc-cccCccccCCCCCCEEECCCCcccccCCccCCCCCC
Q 038612 438 RVGNLKNLARLDISMNHFFGEIPATLSACTSLEYLYMQGNSFG-GRIPLSLISLKSLKVLDLSRNNLSGKIPEYLENLPF 516 (678)
Q Consensus 438 ~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~ 516 (678)
.+..+++|++|++++|.+.+..|..+..+++|++|++++|++. +.+|..+..+++|++|++++|++++..|..+..+++
T Consensus 416 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 495 (570)
T 2z63_A 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495 (570)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccC
Confidence 3444555555555555555444444555555555555555544 344444555555555555555555444555555555
Q ss_pred CCEEeCCcCcceeeCCCC-CccCCCCceeccCCCCCcc
Q 038612 517 LQYLDLSYNHFEGQVPAK-GVFHNKTSISLVGNENLCG 553 (678)
Q Consensus 517 L~~L~l~~n~l~~~~p~~-~~~~~l~~~~~~~n~~lc~ 553 (678)
|++|++++|++.+..|.. ..+.+++.+++.+|+..|.
T Consensus 496 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 496 LQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCC
Confidence 555555555554433321 2334444555555554443
No 12
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.2e-47 Score=424.68 Aligned_cols=451 Identities=22% Similarity=0.206 Sum_probs=357.8
Q ss_pred EEEcCCCCCCCcccCCCCCCCCEEECCCCCCccccChhhcCCccCcEEeccCCCCccCCCccCCCCCCCCEEEccccccc
Q 038612 80 ELYLRNQSLGADIGYSSWSKLEKLSIAVNHLRGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFS 159 (678)
Q Consensus 80 ~l~l~~~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 159 (678)
.++.++++++..+. .-.+++++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|+|++|.++
T Consensus 15 ~~~c~~~~l~~ip~-~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~ 93 (606)
T 3vq2_A 15 TYQCMDQKLSKVPD-DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ 93 (606)
T ss_dssp EEECTTSCCSSCCT-TSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred ceEccCCCcccCCC-CCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCccc
Confidence 45566666655433 12378999999999999988889999999999999999999888999999999999999999999
Q ss_pred ccCcccccCCCCCcEEECCCCCCCccCChhhhcCCCCCCEEEcccCcCCC-CCCccCcCCCCCcEEeccCCcceeccCCC
Q 038612 160 GMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLTG-PIPHSLSNASNLIELNLGQNHFTGKVSID 238 (678)
Q Consensus 160 ~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~ 238 (678)
+..|..|+++++|++|++++|.+++..+..+. .+++|++|++++|.+++ .+|..++++++|++|++++|++++..+..
T Consensus 94 ~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~ 172 (606)
T 3vq2_A 94 SFSPGSFSGLTSLENLVAVETKLASLESFPIG-QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVND 172 (606)
T ss_dssp CCCTTSSTTCTTCCEEECTTSCCCCSSSSCCT-TCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTT
T ss_pred ccChhhcCCcccCCEEEccCCccccccccccC-CCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhh
Confidence 88899999999999999999999966666666 99999999999999986 57999999999999999999999988888
Q ss_pred CCCCCCCC----eEEcccCcccccCCCCcccccccCCCCCCcEEEcccCCCCc-ccChh---------------------
Q 038612 239 FNGLSDLA----WLSFEANNLGAEASNDLDFVFSLTNCSKLEWLELRKNQFGG-NLPHF--------------------- 292 (678)
Q Consensus 239 ~~~l~~L~----~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~-~~p~~--------------------- 292 (678)
+..+++|+ +|++++|.+...... .+ ...+|++|++++|.+.+ ..|..
T Consensus 173 ~~~l~~L~~~l~~L~l~~n~l~~~~~~------~~-~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~ 245 (606)
T 3vq2_A 173 LQFLRENPQVNLSLDMSLNPIDFIQDQ------AF-QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER 245 (606)
T ss_dssp THHHHHCTTCCCEEECTTCCCCEECTT------TT-TTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSC
T ss_pred hhhhhccccccceeeccCCCcceeCcc------cc-cCceeeeeeccCCccchhHHHHHhccccccccccccccccccCC
Confidence 88777665 899999999876543 22 23368888888876541 12222
Q ss_pred -----------------------------------HhhccccCcEEEccCcceeccCCccCcCCccccccccccceeeec
Q 038612 293 -----------------------------------IANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLIGT 337 (678)
Q Consensus 293 -----------------------------------~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 337 (678)
+..++ +|+.|++++|.+. .+| .+..+++|+.|++++|.+ +.
T Consensus 246 ~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~ 321 (606)
T 3vq2_A 246 NLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLA-NVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQ 321 (606)
T ss_dssp CCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGT-TCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SS
T ss_pred cccccChHHhhhhhhccHhheeccccccccccccccccCC-CCCEEEecCccch-hhh-hccccccCCEEEcccccC-cc
Confidence 23333 3677777777765 344 667777777777777777 56
Q ss_pred cCcccCCCcccceeeccCccccccCCccccCCCCCcEEeccCCccCcc--CCCCCCCcCCCceEecCCCccccccCcccc
Q 038612 338 IPHVIGSLKNLQLLYLYGNSLEGNIPSSLGNLTLLTKLALDFNNLQGN--IPSSLGSCQNLMELIVSHNKLNGTLPQQIL 415 (678)
Q Consensus 338 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~ 415 (678)
+| .+ .+++|++|++++|...+.. .+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+. .+|..+.
T Consensus 322 lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~ 396 (606)
T 3vq2_A 322 FP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFM 396 (606)
T ss_dssp CC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE-EECCCCT
T ss_pred cc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc-cchhhcc
Confidence 66 34 7777888888777554433 456778888888888887755 3666777888888888888877 4666777
Q ss_pred cccccceEEEcCCCcccccCC-ccccCcccCCeeecccCcccccCCccccCCCCCCEEECcCCcccc-ccCccccCCCCC
Q 038612 416 EIRTLSFQLDLSNNLLSGYLP-FRVGNLKNLARLDISMNHFFGEIPATLSACTSLEYLYMQGNSFGG-RIPLSLISLKSL 493 (678)
Q Consensus 416 ~~~~l~~~L~l~~n~l~~~~~-~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L 493 (678)
.++.+ +.|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|++.+ .+|..+..+++|
T Consensus 397 ~l~~L-~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 475 (606)
T 3vq2_A 397 GLEEL-QHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL 475 (606)
T ss_dssp TCTTC-CEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred CCCCC-CeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCC
Confidence 77777 788888888887776 577888888888888888888788888888888888888888887 467788888888
Q ss_pred CEEECCCCcccccCCccCCCCCCCCEEeCCcCcceeeCCCC-CccCCCCceeccCCC
Q 038612 494 KVLDLSRNNLSGKIPEYLENLPFLQYLDLSYNHFEGQVPAK-GVFHNKTSISLVGNE 549 (678)
Q Consensus 494 ~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~~~l~~~~~~~n~ 549 (678)
++|++++|++++..|..+..+++|++|++++|++.+..|.. ..+.+++.+++.+|.
T Consensus 476 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 476 TFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR 532 (606)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC
T ss_pred CEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc
Confidence 88888888888888888888888888888888888776643 446678888888876
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-46 Score=416.60 Aligned_cols=435 Identities=22% Similarity=0.215 Sum_probs=374.7
Q ss_pred CCCCEEECCCCCCccccChhhcCCccCcEEeccCCCCccCCCccCCCCCCCCEEEcccccccccCcccccCCCCCcEEEC
Q 038612 98 SKLEKLSIAVNHLRGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFL 177 (678)
Q Consensus 98 ~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 177 (678)
+++++|++++|.+++..+.+|.++++|++|++++|.+++..|..|.++++|++|+|++|.+++..|..|.++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 57999999999999988899999999999999999999888889999999999999999999888899999999999999
Q ss_pred CCCCCCccCChhhhcCCCCCCEEEcccCcCCC-CCCccCcCCCCCcEEeccCCcceeccCCCCCCCCCC----CeEEccc
Q 038612 178 PANRLEGILPLNIGFNLPNLKSLIVAQNNLTG-PIPHSLSNASNLIELNLGQNHFTGKVSIDFNGLSDL----AWLSFEA 252 (678)
Q Consensus 178 ~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L----~~L~l~~ 252 (678)
++|.+++..+..+. .+++|++|++++|.+++ .+|..++++++|++|++++|++++..+..+..+++| +.+++++
T Consensus 108 ~~n~l~~l~~~~~~-~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~ 186 (570)
T 2z63_A 108 VETNLASLENFPIG-HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (570)
T ss_dssp TTSCCCCSTTCSCT-TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred cccccccCCCcccc-ccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCC
Confidence 99999855444555 89999999999999987 468999999999999999999998888888888888 8999999
Q ss_pred CcccccCCCCcccccccCCCCCCcEEEcccCCCCc-ccChhHhhcc-------------------------------ccC
Q 038612 253 NNLGAEASNDLDFVFSLTNCSKLEWLELRKNQFGG-NLPHFIANLS-------------------------------KTM 300 (678)
Q Consensus 253 n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~-~~p~~~~~~~-------------------------------~~L 300 (678)
|.+....+. .+... +|+.|++++|.... .++..+..+. -.+
T Consensus 187 n~l~~~~~~------~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l 259 (570)
T 2z63_A 187 NPMNFIQPG------AFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259 (570)
T ss_dssp CCCCEECTT------TTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEE
T ss_pred CCceecCHH------HhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccch
Confidence 999876553 33333 79999998874321 1111221111 125
Q ss_pred cEEEccCc-ceeccCCccCcCCccccccccccceeeeccCcccCCCcccceeeccCccccccCCccccCCCCCcEEeccC
Q 038612 301 TIIDMGEN-KLSGTIPLGIGNLVNLNLFSLHLNQLIGTIPHVIGSLKNLQLLYLYGNSLEGNIPSSLGNLTLLTKLALDF 379 (678)
Q Consensus 301 ~~L~L~~n-~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 379 (678)
+.++++++ .+.+..+..+..+++|+.|++++|.+. .+|..+..+ +|++|++++|.+. .+|. ..+++|++|++++
T Consensus 260 ~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~ 334 (570)
T 2z63_A 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTS 334 (570)
T ss_dssp EEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEES
T ss_pred hhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcC
Confidence 66777777 778888999999999999999999988 578888888 9999999999998 5554 5789999999999
Q ss_pred CccCccCCCCCCCcCCCceEecCCCcccccc--CcccccccccceEEEcCCCcccccCCccccCcccCCeeecccCcccc
Q 038612 380 NNLQGNIPSSLGSCQNLMELIVSHNKLNGTL--PQQILEIRTLSFQLDLSNNLLSGYLPFRVGNLKNLARLDISMNHFFG 457 (678)
Q Consensus 380 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--p~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~ 457 (678)
|.+.+..+. ..+++|+.|++++|++.+.. |..+..++.+ +.|++++|.+.+..+. +..+++|++|++++|.+.+
T Consensus 335 n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L-~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~ 410 (570)
T 2z63_A 335 NKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSL-KYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQ 410 (570)
T ss_dssp CBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCC-CEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEES
T ss_pred Ccccccccc--ccCCCCCEEeCcCCccCccccccccccccCcc-CEEECCCCcccccccc-ccccCCCCEEEccCCcccc
Confidence 998876665 67899999999999998543 6777888888 8999999999976665 8999999999999999987
Q ss_pred cCC-ccccCCCCCCEEECcCCccccccCccccCCCCCCEEECCCCccc-ccCCccCCCCCCCCEEeCCcCcceeeCCCC-
Q 038612 458 EIP-ATLSACTSLEYLYMQGNSFGGRIPLSLISLKSLKVLDLSRNNLS-GKIPEYLENLPFLQYLDLSYNHFEGQVPAK- 534 (678)
Q Consensus 458 ~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~-~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~- 534 (678)
..+ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.++ +.+|..+..+++|++|++++|++.+..|..
T Consensus 411 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~ 490 (570)
T 2z63_A 411 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 490 (570)
T ss_dssp CTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT
T ss_pred ccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhh
Confidence 766 56889999999999999999999999999999999999999998 578999999999999999999999887744
Q ss_pred CccCCCCceeccCCC
Q 038612 535 GVFHNKTSISLVGNE 549 (678)
Q Consensus 535 ~~~~~l~~~~~~~n~ 549 (678)
..+.+++.+++.+|.
T Consensus 491 ~~l~~L~~L~l~~n~ 505 (570)
T 2z63_A 491 NSLSSLQVLNMASNQ 505 (570)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred hcccCCCEEeCCCCc
Confidence 557889999999885
No 14
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=8.5e-47 Score=435.05 Aligned_cols=457 Identities=20% Similarity=0.189 Sum_probs=383.7
Q ss_pred EEEEcCCCCCCCcccCCCCCCCCEEECCCCCCccccChhhcCCccCcEEeccCCCCccCC-CccCCCCCCCCEEEccccc
Q 038612 79 TELYLRNQSLGADIGYSSWSKLEKLSIAVNHLRGQLPASIGNLSALQAFDVGENTLHGRI-PESLGQLRSLKFLNVEENN 157 (678)
Q Consensus 79 ~~l~l~~~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~-p~~~~~l~~L~~L~L~~n~ 157 (678)
...+.++++++..+. -.+++++|+|++|.+++..+..|.++++|++|++++|...+.+ |..|.++++|++|+|++|.
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~ 84 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc
Confidence 345666777777666 5688999999999999999999999999999999999665555 7889999999999999999
Q ss_pred ccccCcccccCCCCCcEEECCCCCCCccCChh-hhcCCCCCCEEEcccCcCCCCCC-ccCcCCCCCcEEeccCCcceecc
Q 038612 158 FSGMVPVSIYNISSLEMIFLPANRLEGILPLN-IGFNLPNLKSLIVAQNNLTGPIP-HSLSNASNLIELNLGQNHFTGKV 235 (678)
Q Consensus 158 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~-~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~ 235 (678)
+++..|..|.++++|++|++++|.+++.+|.. .+..+++|++|++++|.+++..+ ..|+++++|++|++++|.+++..
T Consensus 85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~ 164 (844)
T 3j0a_A 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVC 164 (844)
T ss_dssp CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCC
T ss_pred CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeC
Confidence 99999999999999999999999999876654 23489999999999999987655 57999999999999999999988
Q ss_pred CCCCCCC--CCCCeEEcccCcccccCCCCcccccccCCCC------CCcEEEcccCCCCcccChhHhhc-----------
Q 038612 236 SIDFNGL--SDLAWLSFEANNLGAEASNDLDFVFSLTNCS------KLEWLELRKNQFGGNLPHFIANL----------- 296 (678)
Q Consensus 236 ~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~------~L~~L~L~~n~~~~~~p~~~~~~----------- 296 (678)
+..+..+ ++|+.|+++.|.+....+. .+..++ .|+.|++++|.+.+..+..+...
T Consensus 165 ~~~l~~l~~~~L~~L~L~~n~l~~~~~~------~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l 238 (844)
T 3j0a_A 165 EHELEPLQGKTLSFFSLAANSLYSRVSV------DWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLIL 238 (844)
T ss_dssp SGGGHHHHHCSSCCCEECCSBSCCCCCC------CCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEEC
T ss_pred HHHcccccCCccceEECCCCcccccccc------chhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceec
Confidence 8888877 8999999999998875443 233333 49999999998877666554432
Q ss_pred --------------------------cccCcEEEccCcceeccCCccCcCCccccccccccceeeeccCcccCCCcccce
Q 038612 297 --------------------------SKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLIGTIPHVIGSLKNLQL 350 (678)
Q Consensus 297 --------------------------~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 350 (678)
..+|+.|++++|.+.+..+..+..+++|+.|++++|++.+..|..|..+++|++
T Consensus 239 ~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 318 (844)
T 3j0a_A 239 AHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQV 318 (844)
T ss_dssp CSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCE
T ss_pred ccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCE
Confidence 245999999999999999999999999999999999999999999999999999
Q ss_pred eeccCccccccCCccccCCCCCcEEeccCCccCccCCCCCCCcCCCceEecCCCccccccCcccccccccceEEEcCC--
Q 038612 351 LYLYGNSLEGNIPSSLGNLTLLTKLALDFNNLQGNIPSSLGSCQNLMELIVSHNKLNGTLPQQILEIRTLSFQLDLSN-- 428 (678)
Q Consensus 351 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~L~l~~-- 428 (678)
|++++|.+.+..|..+.++++|++|++++|.+.+..+..|..+++|+.|++++|.+.+ ++. ++.+ +.+++++
T Consensus 319 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~----~~~L-~~L~l~~N~ 392 (844)
T 3j0a_A 319 LNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-IHF----IPSI-PDIFLSGNK 392 (844)
T ss_dssp EEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-CSS----CCSC-SEEEEESCC
T ss_pred EECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-ccC----CCCc-chhccCCCC
Confidence 9999999998888999999999999999999998888889999999999999999873 332 3333 4444444
Q ss_pred ------------------CcccccC-CccccCcccCCeeecccCcccccCCc-cccCCCCCCEEECcCCccc-----ccc
Q 038612 429 ------------------NLLSGYL-PFRVGNLKNLARLDISMNHFFGEIPA-TLSACTSLEYLYMQGNSFG-----GRI 483 (678)
Q Consensus 429 ------------------n~l~~~~-~~~~~~l~~L~~L~Ls~n~~~~~~~~-~~~~l~~L~~L~L~~n~l~-----~~~ 483 (678)
|.+++.. +..+..+++|++|+|++|++++..+. .+..+++|+.|++++|.+. +..
T Consensus 393 l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~ 472 (844)
T 3j0a_A 393 LVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELC 472 (844)
T ss_dssp CCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCC
T ss_pred cccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccc
Confidence 4444321 12245788999999999999865443 3566899999999999987 444
Q ss_pred CccccCCCCCCEEECCCCcccccCCccCCCCCCCCEEeCCcCcceeeCCCCCccCCCCceeccCCCC
Q 038612 484 PLSLISLKSLKVLDLSRNNLSGKIPEYLENLPFLQYLDLSYNHFEGQVPAKGVFHNKTSISLVGNEN 550 (678)
Q Consensus 484 ~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~n~~ 550 (678)
+..|.++++|+.|+|++|++++..|..|..+++|+.|++++|++++..|.. ...+++.+++.+|..
T Consensus 473 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~-~~~~L~~L~Ls~N~l 538 (844)
T 3j0a_A 473 WDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHND-LPANLEILDISRNQL 538 (844)
T ss_dssp SSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCC-CCSCCCEEEEEEECC
T ss_pred hhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhh-hhccccEEECCCCcC
Confidence 567889999999999999999999999999999999999999998655443 347899999998863
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.5e-46 Score=412.45 Aligned_cols=475 Identities=19% Similarity=0.210 Sum_probs=292.3
Q ss_pred CCCcccccccCCC-----------CcEEEEEcCCCCCCCc--ccCCCCCCCCEEECCCCCCccccChhhcCCccCcEEec
Q 038612 63 LCQWTGVTCGRRH-----------QRVTELYLRNQSLGAD--IGYSSWSKLEKLSIAVNHLRGQLPASIGNLSALQAFDV 129 (678)
Q Consensus 63 ~c~w~gv~c~~~~-----------~~v~~l~l~~~~l~~~--~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~l 129 (678)
.|.|.|+ |+... ..++.++++++.+.+. ..+..+++|++|++++|.+.+..|..|.++++|++|++
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 81 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEEC
Confidence 4888887 75321 2455555555554433 23455555555555555555544455555555555555
Q ss_pred cCCCCccCCCccCCCCCCCCEEEcccccccc-cCcccccCCCCCcEEECCCCCCCccCChhhhcCCCCCCEEEcccCcCC
Q 038612 130 GENTLHGRIPESLGQLRSLKFLNVEENNFSG-MVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLT 208 (678)
Q Consensus 130 s~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~ 208 (678)
++|.+++..|..|+++++|++|++++|.+++ ..|..+.++++|++|++++|.+.+.+|...+..+++|++|++++|.++
T Consensus 82 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 82 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161 (549)
T ss_dssp TTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred CCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc
Confidence 5555554444445555555555555555543 233445555555555555555333343222224555555555555555
Q ss_pred CCCCccCcCCCCCcEEeccCCcceeccCCCCCCCCCCCeEEcccCcccccCCCCcccccccCCCCCCcEEEcccCCCCcc
Q 038612 209 GPIPHSLSNASNLIELNLGQNHFTGKVSIDFNGLSDLAWLSFEANNLGAEASNDLDFVFSLTNCSKLEWLELRKNQFGGN 288 (678)
Q Consensus 209 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~ 288 (678)
+..|..+.++++|++|++++|.+.......+..+++|++|++++|.+.+...... .....+++|+.|++++|.+.+.
T Consensus 162 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~~~~~~~L~~L~l~~n~l~~~ 238 (549)
T 2z81_A 162 NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPL---PVDEVSSPMKKLAFRGSVLTDE 238 (549)
T ss_dssp EECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCC---SSCCCCCCCCEEEEESCEEEHH
T ss_pred ccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCcccccccccc---chhhhhhcccceeccccccchh
Confidence 5555555555555555555554432222222345555555555555544321100 1123345566666666655544
Q ss_pred cChhHh----hccccCcEEEccCcceeccC------CccCcCCccccccccccceeeecc-----CcccCCCcccceeec
Q 038612 289 LPHFIA----NLSKTMTIIDMGENKLSGTI------PLGIGNLVNLNLFSLHLNQLIGTI-----PHVIGSLKNLQLLYL 353 (678)
Q Consensus 289 ~p~~~~----~~~~~L~~L~L~~n~l~~~~------~~~l~~l~~L~~L~l~~n~~~~~~-----~~~~~~l~~L~~L~l 353 (678)
.+..+. .++ .|+.+++++|.+.+.. ...+..+++|+.+.+.++.+.... +..+...++|++|++
T Consensus 239 ~~~~l~~~~~~~~-~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l 317 (549)
T 2z81_A 239 SFNELLKLLRYIL-ELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITV 317 (549)
T ss_dssp HHHHHHGGGGGCT-TCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEE
T ss_pred HHHHHHHHhhhhc-cccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEe
Confidence 333332 222 3666666666665421 122345566666666665543211 111223467889999
Q ss_pred cCccccccCCccc-cCCCCCcEEeccCCccCccCC---CCCCCcCCCceEecCCCccccccC--cccccccccceEEEcC
Q 038612 354 YGNSLEGNIPSSL-GNLTLLTKLALDFNNLQGNIP---SSLGSCQNLMELIVSHNKLNGTLP--QQILEIRTLSFQLDLS 427 (678)
Q Consensus 354 ~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~p--~~~~~~~~l~~~L~l~ 427 (678)
++|.+. .+|..+ ..+++|++|++++|.+.+.+| ..+..+++|++|++++|++.+..+ ..+..++.+ +.|+++
T Consensus 318 ~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L-~~L~Ls 395 (549)
T 2z81_A 318 ENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNL-TSLDIS 395 (549)
T ss_dssp ESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTC-CEEECT
T ss_pred ccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCC-CEEECC
Confidence 998887 566555 578999999999999987653 347788999999999999874322 346677777 889999
Q ss_pred CCcccccCCccccCcccCCeeecccCcccccCCccccCCCCCCEEECcCCccccccCccccCCCCCCEEECCCCcccccC
Q 038612 428 NNLLSGYLPFRVGNLKNLARLDISMNHFFGEIPATLSACTSLEYLYMQGNSFGGRIPLSLISLKSLKVLDLSRNNLSGKI 507 (678)
Q Consensus 428 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~ 507 (678)
+|.++ .+|..+..+++|++|++++|+++ .+|..+ .++|++|++++|++++.+ ..+++|++|++++|+++ .+
T Consensus 396 ~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~i 466 (549)
T 2z81_A 396 RNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TL 466 (549)
T ss_dssp TCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SC
T ss_pred CCCCc-cCChhhcccccccEEECCCCCcc-cccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cC
Confidence 99998 56778888899999999999987 344433 268999999999988643 47889999999999998 56
Q ss_pred CccCCCCCCCCEEeCCcCcceeeCCCC-CccCCCCceeccCCCCCccc
Q 038612 508 PEYLENLPFLQYLDLSYNHFEGQVPAK-GVFHNKTSISLVGNENLCGG 554 (678)
Q Consensus 508 p~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~~~l~~~~~~~n~~lc~~ 554 (678)
|. ...+++|++|++++|++++.+|.. ..+.+++.+++.+|++.|.+
T Consensus 467 p~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 513 (549)
T 2z81_A 467 PD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 513 (549)
T ss_dssp CC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCH
T ss_pred CC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCC
Confidence 65 467899999999999999876652 55778889999999988764
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.8e-45 Score=402.51 Aligned_cols=450 Identities=20% Similarity=0.171 Sum_probs=251.5
Q ss_pred EEEEcCCCCCCCcccCCCCCCCCEEECCCCCCccccChhhcCCccCcEEeccCCCCccCCCccCCCCCCCCEEEcccccc
Q 038612 79 TELYLRNQSLGADIGYSSWSKLEKLSIAVNHLRGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVEENNF 158 (678)
Q Consensus 79 ~~l~l~~~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l 158 (678)
+.++++++.++..+.-. .++|++|++++|.+.+..|..|.++++|++|++++|.+++..|..|+++++|++|+|++|.+
T Consensus 3 ~~l~ls~n~l~~ip~~~-~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 81 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDL-SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL 81 (520)
T ss_dssp CEEECTTSCCSSCCCSC-CTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCC
T ss_pred ceEecCCCCcccccccc-cccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCce
Confidence 35777777776543311 27788888888888877777888888888888888888877777888888888888888888
Q ss_pred cccCcccccCCCCCcEEECCCCCCCc-cCChhhhcCCCCCCEEEcccCcCCCCCCccCcCCCCC--cEEeccCCcc--ee
Q 038612 159 SGMVPVSIYNISSLEMIFLPANRLEG-ILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNL--IELNLGQNHF--TG 233 (678)
Q Consensus 159 ~~~~~~~~~~l~~L~~L~l~~n~~~~-~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L--~~L~L~~n~l--~~ 233 (678)
+ .+|.. .+++|++|++++|.+++ .+|..+. .+++|++|++++|.+++ ..+..+++| +.|++++|.+ .+
T Consensus 82 ~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~-~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~ 154 (520)
T 2z7x_B 82 V-KISCH--PTVNLKHLDLSFNAFDALPICKEFG-NMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEK 154 (520)
T ss_dssp C-EEECC--CCCCCSEEECCSSCCSSCCCCGGGG-GCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSS
T ss_pred e-ecCcc--ccCCccEEeccCCccccccchhhhc-cCCcceEEEecCcccch---hhccccccceeeEEEeecccccccc
Confidence 7 45555 78888888888888876 4566666 78888888888888765 356666777 8888888887 66
Q ss_pred ccCCCCCCCC-CCCeEEcccCcccccCCCCcccccccCCCCCCcEEEcccCC-------CCcccChhHhhccccCcEEEc
Q 038612 234 KVSIDFNGLS-DLAWLSFEANNLGAEASNDLDFVFSLTNCSKLEWLELRKNQ-------FGGNLPHFIANLSKTMTIIDM 305 (678)
Q Consensus 234 ~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~-------~~~~~p~~~~~~~~~L~~L~L 305 (678)
..|..+..+. ....+++++|.+...... ..+..+++|+.+++++|. +.+.+| .+..++. |+.|++
T Consensus 155 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~~-----~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~-L~~L~l 227 (520)
T 2z7x_B 155 EDPEGLQDFNTESLHIVFPTNKEFHFILD-----VSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPK-LSNLTL 227 (520)
T ss_dssp CCTTTTTTCCEEEEEEECCSSSCCCCCCC-----CCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTT-CCEEEE
T ss_pred cccccccccccceEEEEeccCcchhhhhh-----hhhhcccceeeccccccccccccceeecchh-hhccccc-hhhccc
Confidence 6666665544 222344555554432211 234455555666655554 333332 3334433 555555
Q ss_pred cCcceeccCCccCc---CCccccccccccceeeeccCccc-----CCCcccceeeccCccccccCC-ccccCC---CCCc
Q 038612 306 GENKLSGTIPLGIG---NLVNLNLFSLHLNQLIGTIPHVI-----GSLKNLQLLYLYGNSLEGNIP-SSLGNL---TLLT 373 (678)
Q Consensus 306 ~~n~l~~~~~~~l~---~l~~L~~L~l~~n~~~~~~~~~~-----~~l~~L~~L~l~~n~l~~~~~-~~~~~l---~~L~ 373 (678)
++|.+++..+..+. ..++|+.|++++|++.+.+|..+ +.+++|+.+++++|.+ .+| ..+..+ ++|+
T Consensus 228 ~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~ 305 (520)
T 2z7x_B 228 NNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIK 305 (520)
T ss_dssp EEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCS
T ss_pred cccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCcee
Confidence 55554432211111 12355555555555555555444 4555555555555554 222 222222 3455
Q ss_pred EEeccCCccCccCCCCCCCcCCCceEecCCCccccccCcccccccccceEEEcCCCcccc--cCCccccCcccCCeeecc
Q 038612 374 KLALDFNNLQGNIPSSLGSCQNLMELIVSHNKLNGTLPQQILEIRTLSFQLDLSNNLLSG--YLPFRVGNLKNLARLDIS 451 (678)
Q Consensus 374 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~L~l~~n~l~~--~~~~~~~~l~~L~~L~Ls 451 (678)
.|++++|.+.... .+..+++|++|++++|++.+.+|..+..++.+ +.|++++|.+++ .+|..+..+++|++|+++
T Consensus 306 ~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls 382 (520)
T 2z7x_B 306 NFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTEL-ETLILQMNQLKELSKIAEMTTQMKSLQQLDIS 382 (520)
T ss_dssp EEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSC-CEEECCSSCCCBHHHHHHHHTTCTTCCEEECC
T ss_pred EEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCC-CEEEccCCccCccccchHHHhhCCCCCEEECC
Confidence 5555555443221 01344555555555555554445444444444 455555555554 233444555555555555
Q ss_pred cCcccccCCc-cccCCCCCCEEECcCCccccccCccccCCCCCCEEECCCCcccccCCccCCCCCCCCEEeCCcCcceee
Q 038612 452 MNHFFGEIPA-TLSACTSLEYLYMQGNSFGGRIPLSLISLKSLKVLDLSRNNLSGKIPEYLENLPFLQYLDLSYNHFEGQ 530 (678)
Q Consensus 452 ~n~~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~ 530 (678)
+|.+++.+|. .+..+++|++|++++|++++..|..+. ++|+.|++++|+++ .+|..+..+++|++|++++|++. .
T Consensus 383 ~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~ 458 (520)
T 2z7x_B 383 QNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-S 458 (520)
T ss_dssp SSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-C
T ss_pred CCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-c
Confidence 5555543333 244455555555555555444444332 45555555555555 44444445555555555555554 2
Q ss_pred CCCC--CccCCCCceeccCCCCCc
Q 038612 531 VPAK--GVFHNKTSISLVGNENLC 552 (678)
Q Consensus 531 ~p~~--~~~~~l~~~~~~~n~~lc 552 (678)
+|.. ..+.+++.+++.+|+..|
T Consensus 459 l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 459 VPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cCHHHhccCCcccEEECcCCCCcc
Confidence 3321 223444555555555444
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.7e-46 Score=418.28 Aligned_cols=431 Identities=19% Similarity=0.235 Sum_probs=297.2
Q ss_pred CCcEEEEEcCCCCCCCccc-CC------C-----CCCCCEEECCCCCCccccChhhcC-CccCcEEeccCCCCccCCCcc
Q 038612 75 HQRVTELYLRNQSLGADIG-YS------S-----WSKLEKLSIAVNHLRGQLPASIGN-LSALQAFDVGENTLHGRIPES 141 (678)
Q Consensus 75 ~~~v~~l~l~~~~l~~~~~-~~------~-----l~~L~~L~Ls~n~~~~~~~~~l~~-l~~L~~L~ls~n~l~~~~p~~ 141 (678)
...++.|++++|.+..... ++ . +..|+ ++++.+.+.+..|..+.. +..+..+++....+..
T Consensus 104 L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~----- 177 (636)
T 4eco_A 104 LTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK----- 177 (636)
T ss_dssp CTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCC-----
T ss_pred CccceEEECcCCccccCCccccccccccCchHHHHHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCcccccccc-----
Confidence 4678999999986521111 11 1 33466 777778777777766652 2233333333221110
Q ss_pred CCCCCCCCEEEc--ccccccccCcccccCCCCCcEEECCCCCCCcc-----------------CChhhh-cCCCCCCEEE
Q 038612 142 LGQLRSLKFLNV--EENNFSGMVPVSIYNISSLEMIFLPANRLEGI-----------------LPLNIG-FNLPNLKSLI 201 (678)
Q Consensus 142 ~~~l~~L~~L~L--~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~-----------------~p~~~~-~~l~~L~~L~ 201 (678)
.....++.+.+ .+|++++ +|..++++++|++|++++|.+++. +|..++ ..+++|++|+
T Consensus 178 -~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~ 255 (636)
T 4eco_A 178 -SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVE 255 (636)
T ss_dssp -CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEE
T ss_pred -ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEE
Confidence 01111111112 1344444 455555555555555555555543 444432 1355555555
Q ss_pred cccCcCCCCCCccCcCCCCCcEEeccCCc-cee-ccCCCCCCC------CCCCeEEcccCcccccCCCCccccc--ccCC
Q 038612 202 VAQNNLTGPIPHSLSNASNLIELNLGQNH-FTG-KVSIDFNGL------SDLAWLSFEANNLGAEASNDLDFVF--SLTN 271 (678)
Q Consensus 202 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~~~~~~~l------~~L~~L~l~~n~l~~~~~~~~~~~~--~l~~ 271 (678)
+++|.+.+.+|..++++++|++|++++|+ +++ .+|..+..+ ++|++|++++|.+.. ++. .+..
T Consensus 256 L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~-------ip~~~~l~~ 328 (636)
T 4eco_A 256 VYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT-------FPVETSLQK 328 (636)
T ss_dssp EECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSS-------CCCHHHHTT
T ss_pred ecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCc-------cCchhhhcc
Confidence 55555555555555555555555555555 554 455444443 566666666665542 122 4666
Q ss_pred CCCCcEEEcccCCCCcccChhHhhccccCcEEEccCcceeccCCccCcCCcc-ccccccccceeeeccCcccCCCc--cc
Q 038612 272 CSKLEWLELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVN-LNLFSLHLNQLIGTIPHVIGSLK--NL 348 (678)
Q Consensus 272 ~~~L~~L~L~~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~l~~n~~~~~~~~~~~~l~--~L 348 (678)
+++|++|++++|.+.+.+| .+..++. |+.|++++|+++ .+|..+..+++ |+.|++++|.+. .+|..+..++ +|
T Consensus 329 l~~L~~L~L~~N~l~g~ip-~~~~l~~-L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L 404 (636)
T 4eco_A 329 MKKLGMLECLYNQLEGKLP-AFGSEIK-LASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVM 404 (636)
T ss_dssp CTTCCEEECCSCCCEEECC-CCEEEEE-ESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCE
T ss_pred CCCCCEEeCcCCcCccchh-hhCCCCC-CCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCcc
Confidence 7777788888888777777 6666665 888888888888 77888888888 999999988888 6777776654 89
Q ss_pred ceeeccCccccccCCcccc-------CCCCCcEEeccCCccCccCCCCCCCcCCCceEecCCCccccccCccccccc---
Q 038612 349 QLLYLYGNSLEGNIPSSLG-------NLTLLTKLALDFNNLQGNIPSSLGSCQNLMELIVSHNKLNGTLPQQILEIR--- 418 (678)
Q Consensus 349 ~~L~l~~n~l~~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~--- 418 (678)
++|++++|.+.+..|..+. .+++|++|++++|.+....+..+..+++|++|++++|++. .+|...+...
T Consensus 405 ~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~ 483 (636)
T 4eco_A 405 SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENEN 483 (636)
T ss_dssp EEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEE
T ss_pred CEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhcccccc
Confidence 9999999999888888887 7788999999999988443344556889999999999988 6776655433
Q ss_pred -----ccceEEEcCCCcccccCCcccc--CcccCCeeecccCcccccCCccccCCCCCCEEEC------cCCccccccCc
Q 038612 419 -----TLSFQLDLSNNLLSGYLPFRVG--NLKNLARLDISMNHFFGEIPATLSACTSLEYLYM------QGNSFGGRIPL 485 (678)
Q Consensus 419 -----~l~~~L~l~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L------~~n~l~~~~~~ 485 (678)
.+ +.|++++|.++ .+|..+. .+++|++|+|++|++++ +|..+..+++|++|+| ++|++.+.+|.
T Consensus 484 ~~~l~~L-~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~ 560 (636)
T 4eco_A 484 FKNTYLL-TSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE 560 (636)
T ss_dssp CTTGGGC-CEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCT
T ss_pred ccccCCc-cEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChH
Confidence 56 88999999999 5777776 89999999999999997 8888999999999999 56778889999
Q ss_pred cccCCCCCCEEECCCCcccccCCccCCCCCCCCEEeCCcCcceeeC
Q 038612 486 SLISLKSLKVLDLSRNNLSGKIPEYLENLPFLQYLDLSYNHFEGQV 531 (678)
Q Consensus 486 ~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~ 531 (678)
.+..+++|++|++++|++ +.+|..+. ++|+.|++++|++...-
T Consensus 561 ~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 561 GITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNISID 603 (636)
T ss_dssp TGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCEEE
T ss_pred HHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcccc
Confidence 999999999999999999 57787765 79999999999987543
No 18
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.5e-45 Score=404.52 Aligned_cols=444 Identities=18% Similarity=0.198 Sum_probs=363.0
Q ss_pred CCCcEEEEEcCCCCCCCcc--cCCCCCCCCEEECCCCCCccccChhhcCCccCcEEeccCCCCcc-CCCccCCCCCCCCE
Q 038612 74 RHQRVTELYLRNQSLGADI--GYSSWSKLEKLSIAVNHLRGQLPASIGNLSALQAFDVGENTLHG-RIPESLGQLRSLKF 150 (678)
Q Consensus 74 ~~~~v~~l~l~~~~l~~~~--~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~-~~p~~~~~l~~L~~ 150 (678)
...+++.|+++++.+.+.. .+..+++|++|++++|.+.+..+..|+++++|++|++++|.+++ ..|..++++++|++
T Consensus 48 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~ 127 (549)
T 2z81_A 48 ACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQT 127 (549)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCE
T ss_pred cCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccE
Confidence 3478999999999988763 58999999999999999998888889999999999999999986 45778999999999
Q ss_pred EEcccccccccC-cccccCCCCCcEEECCCCCCCccCChhhhcCCCCCCEEEcccCcCCCCCCccCcCCCCCcEEeccCC
Q 038612 151 LNVEENNFSGMV-PVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLIELNLGQN 229 (678)
Q Consensus 151 L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n 229 (678)
|++++|.+.+.+ +..+.++++|++|++++|.+++..|..+. .+++|++|++++|.+.......+..+++|++|++++|
T Consensus 128 L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 206 (549)
T 2z81_A 128 LRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK-SIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDT 206 (549)
T ss_dssp EEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT-TCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESC
T ss_pred EECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhh-ccccCceEecccCcccccchhhHhhcccccEEEccCC
Confidence 999999844444 46899999999999999999998898887 8999999999999987433333467899999999999
Q ss_pred cceecc--C-CCCCCCCCCCeEEcccCcccccCCCCcccccccCCCCCCcEEEcccCCCCccc------ChhHhhccccC
Q 038612 230 HFTGKV--S-IDFNGLSDLAWLSFEANNLGAEASNDLDFVFSLTNCSKLEWLELRKNQFGGNL------PHFIANLSKTM 300 (678)
Q Consensus 230 ~l~~~~--~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~------p~~~~~~~~~L 300 (678)
++++.. + .....+++|+.|++.+|.+...... .+...+..+++|+.+++++|.+.+.. ...+..+. ++
T Consensus 207 ~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~--~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~-~L 283 (549)
T 2z81_A 207 NLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN--ELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELG-KV 283 (549)
T ss_dssp BCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHH--HHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCT-TC
T ss_pred ccccccccccchhhhhhcccceeccccccchhHHH--HHHHHhhhhccccccccccccccccccccccchhhhhhhc-cc
Confidence 998652 2 2235678999999999988764332 23344567889999999999876421 11223344 48
Q ss_pred cEEEccCcceeccC-----CccCcCCccccccccccceeeeccCccc-CCCcccceeeccCccccccCC---ccccCCCC
Q 038612 301 TIIDMGENKLSGTI-----PLGIGNLVNLNLFSLHLNQLIGTIPHVI-GSLKNLQLLYLYGNSLEGNIP---SSLGNLTL 371 (678)
Q Consensus 301 ~~L~L~~n~l~~~~-----~~~l~~l~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~ 371 (678)
+.|++.++.+.... +..+...++|+.|++++|++. .+|..+ ..+++|++|++++|.+.+.+| ..++.+++
T Consensus 284 ~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~ 362 (549)
T 2z81_A 284 ETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPS 362 (549)
T ss_dssp CEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTT
T ss_pred ccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhcccc
Confidence 99999988765321 111233568999999999986 566555 579999999999999988664 34788999
Q ss_pred CcEEeccCCccCccCC--CCCCCcCCCceEecCCCccccccCcccccccccceEEEcCCCcccccCCccccCcccCCeee
Q 038612 372 LTKLALDFNNLQGNIP--SSLGSCQNLMELIVSHNKLNGTLPQQILEIRTLSFQLDLSNNLLSGYLPFRVGNLKNLARLD 449 (678)
Q Consensus 372 L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 449 (678)
|++|++++|++++..+ ..+..+++|++|++++|++. .+|..+..++.+ +.|++++|.++.. |..+ .++|++|+
T Consensus 363 L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L-~~L~Ls~N~l~~l-~~~~--~~~L~~L~ 437 (549)
T 2z81_A 363 LQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKM-RFLNLSSTGIRVV-KTCI--PQTLEVLD 437 (549)
T ss_dssp CCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTC-CEEECTTSCCSCC-CTTS--CTTCSEEE
T ss_pred CcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccc-cEEECCCCCcccc-cchh--cCCceEEE
Confidence 9999999999986532 45788999999999999998 788888888888 8999999999853 3332 26899999
Q ss_pred cccCcccccCCccccCCCCCCEEECcCCccccccCccccCCCCCCEEECCCCcccccCCccCCCCCCCCEEeCCcCccee
Q 038612 450 ISMNHFFGEIPATLSACTSLEYLYMQGNSFGGRIPLSLISLKSLKVLDLSRNNLSGKIPEYLENLPFLQYLDLSYNHFEG 529 (678)
Q Consensus 450 Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~ 529 (678)
+++|++++.. ..+++|++|+|++|+++ .+|. ...+++|++|++++|++++..|..+..+++|+.|++++|++.|
T Consensus 438 Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 511 (549)
T 2z81_A 438 VSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 511 (549)
T ss_dssp CCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCC
T ss_pred CCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccC
Confidence 9999998643 57899999999999998 5665 4678999999999999999999899999999999999999999
Q ss_pred eCCC
Q 038612 530 QVPA 533 (678)
Q Consensus 530 ~~p~ 533 (678)
.+|.
T Consensus 512 ~~~~ 515 (549)
T 2z81_A 512 SCPR 515 (549)
T ss_dssp CHHH
T ss_pred CCcc
Confidence 8873
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=8.4e-45 Score=410.49 Aligned_cols=440 Identities=19% Similarity=0.271 Sum_probs=338.0
Q ss_pred CCCCEEECCCCCCccccChhhcCCccCcEEec-cCCCCccCCCccCCCC-CCCCE-----EEc----------ccccccc
Q 038612 98 SKLEKLSIAVNHLRGQLPASIGNLSALQAFDV-GENTLHGRIPESLGQL-RSLKF-----LNV----------EENNFSG 160 (678)
Q Consensus 98 ~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~l-s~n~l~~~~p~~~~~l-~~L~~-----L~L----------~~n~l~~ 160 (678)
.+++.|+|+++.+.|.+|.+++++++|++|+| ++|.+.|..|...... ..+.. +.. ....+..
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57899999999999999999999999999999 8888877644221111 00000 000 0000000
Q ss_pred cC-----------cccccCCCCCcEEECCC--CCCCccCChhhhcCCCCCCEEEcccCcCCC-----------------C
Q 038612 161 MV-----------PVSIYNISSLEMIFLPA--NRLEGILPLNIGFNLPNLKSLIVAQNNLTG-----------------P 210 (678)
Q Consensus 161 ~~-----------~~~~~~l~~L~~L~l~~--n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~-----------------~ 210 (678)
.. +........++.+.+.. |.+++ +|..+. .+++|++|+|++|.+++ .
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~-~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~ 480 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQ-RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQY 480 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGG-GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHh-cCCCCCEEECcCCcCCCCccccccccccccccccc
Confidence 00 11111222333333333 56665 666665 67777777777777776 3
Q ss_pred CCccCc--CCCCCcEEeccCCcceeccCCCCCCCCCCCeEEcccCc-ccc-cCCCCcccc-cccCCCCCCcEEEcccCCC
Q 038612 211 IPHSLS--NASNLIELNLGQNHFTGKVSIDFNGLSDLAWLSFEANN-LGA-EASNDLDFV-FSLTNCSKLEWLELRKNQF 285 (678)
Q Consensus 211 ~~~~l~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~-~~~~~~~~~-~~l~~~~~L~~L~L~~n~~ 285 (678)
+|..++ ++++|++|++++|++.+.+|..+.++++|+.|++++|. +++ ..+..+.-. ..+..+++|+.|++++|.+
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 777776 88888888888888888888888888888888888886 665 222211111 1456677999999999999
Q ss_pred CcccCh--hHhhccccCcEEEccCcceeccCCccCcCCccccccccccceeeeccCcccCCCcc-cceeeccCccccccC
Q 038612 286 GGNLPH--FIANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLIGTIPHVIGSLKN-LQLLYLYGNSLEGNI 362 (678)
Q Consensus 286 ~~~~p~--~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~-L~~L~l~~n~l~~~~ 362 (678)
. .+|. .+..++. |+.|++++|.++ .+| .+..+++|+.|++++|++. .+|..+..+++ |++|++++|.+. .+
T Consensus 561 ~-~ip~~~~l~~L~~-L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~l 634 (876)
T 4ecn_A 561 E-EFPASASLQKMVK-LGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YI 634 (876)
T ss_dssp C-BCCCHHHHTTCTT-CCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SC
T ss_pred C-ccCChhhhhcCCC-CCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cC
Confidence 8 8888 8888886 999999999998 778 8999999999999999998 78888999998 999999999998 77
Q ss_pred CccccCCCC--CcEEeccCCccCccCCCCC---C--CcCCCceEecCCCccccccCcccc-cccccceEEEcCCCccccc
Q 038612 363 PSSLGNLTL--LTKLALDFNNLQGNIPSSL---G--SCQNLMELIVSHNKLNGTLPQQIL-EIRTLSFQLDLSNNLLSGY 434 (678)
Q Consensus 363 ~~~~~~l~~--L~~L~L~~n~l~~~~~~~~---~--~l~~L~~L~l~~n~l~~~~p~~~~-~~~~l~~~L~l~~n~l~~~ 434 (678)
|..+..++. |+.|++++|.+.+.+|... . .+++|+.|++++|++. .+|..++ .++.+ +.|++++|.++ .
T Consensus 635 p~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L-~~L~Ls~N~L~-~ 711 (876)
T 4ecn_A 635 PNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPI-STIILSNNLMT-S 711 (876)
T ss_dssp CSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCC-SEEECCSCCCS-C
T ss_pred chhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCC-CEEECCCCcCC-c
Confidence 888877654 9999999999988665322 2 3458999999999998 7787766 56777 89999999999 4
Q ss_pred CCccc-c-------CcccCCeeecccCcccccCCcccc--CCCCCCEEECcCCccccccCccccCCCCCCEEECCC----
Q 038612 435 LPFRV-G-------NLKNLARLDISMNHFFGEIPATLS--ACTSLEYLYMQGNSFGGRIPLSLISLKSLKVLDLSR---- 500 (678)
Q Consensus 435 ~~~~~-~-------~l~~L~~L~Ls~n~~~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~---- 500 (678)
+|..+ . ++++|++|+|++|+++ .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|+|++
T Consensus 712 ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~l 789 (876)
T 4ecn_A 712 IPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDA 789 (876)
T ss_dssp CCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCT
T ss_pred cChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCc
Confidence 44433 2 2349999999999998 7888887 99999999999999997 788899999999999976
Q ss_pred --CcccccCCccCCCCCCCCEEeCCcCcceeeCCCCCccCCCCceeccCCCCCc
Q 038612 501 --NNLSGKIPEYLENLPFLQYLDLSYNHFEGQVPAKGVFHNKTSISLVGNENLC 552 (678)
Q Consensus 501 --n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~n~~lc 552 (678)
|++.+.+|..+..+++|+.|++++|++ +.+|.. .+++++.+++.+|+...
T Consensus 790 s~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~-l~~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 790 EGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK-LTPQLYILDIADNPNIS 841 (876)
T ss_dssp TCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCSSSCEEECCSCTTCE
T ss_pred ccccccccChHHHhcCCCCCEEECCCCCC-CccCHh-hcCCCCEEECCCCCCCc
Confidence 888999999999999999999999999 788876 44789999999998654
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.1e-44 Score=391.07 Aligned_cols=436 Identities=20% Similarity=0.223 Sum_probs=369.3
Q ss_pred CcEEEEEcCCCCCCCc--ccCCCCCCCCEEECCCCCCccccChhhcCCccCcEEeccCCCCccCCCccCCCCCCCCEEEc
Q 038612 76 QRVTELYLRNQSLGAD--IGYSSWSKLEKLSIAVNHLRGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNV 153 (678)
Q Consensus 76 ~~v~~l~l~~~~l~~~--~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L 153 (678)
..++.++++++.+.+. ..+..+++|++|++++|.+++..|..|.++++|++|++++|.++ .+|.. .+++|++|+|
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence 6899999999999876 35899999999999999999998999999999999999999999 56765 8999999999
Q ss_pred ccccccc-cCcccccCCCCCcEEECCCCCCCccCChhhhcCCCCC--CEEEcccCcC--CCCCCccCcCCC-CCcEEecc
Q 038612 154 EENNFSG-MVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNL--KSLIVAQNNL--TGPIPHSLSNAS-NLIELNLG 227 (678)
Q Consensus 154 ~~n~l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L--~~L~l~~n~l--~~~~~~~l~~l~-~L~~L~L~ 227 (678)
++|.+++ .+|..++++++|++|++++|.+++ ..+. .+++| ++|++++|.+ .+..|..+..+. ....++++
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~-~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~ 173 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVL-PIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFP 173 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGG-GGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECC
T ss_pred cCCccccccchhhhccCCcceEEEecCcccch---hhcc-ccccceeeEEEeecccccccccccccccccccceEEEEec
Confidence 9999987 478999999999999999999885 2333 67788 9999999999 778888887776 34467788
Q ss_pred CCcceeccC-CCCCCCCCCCeEEcccCc-------ccccCCCCcccccccCCCCCCcEEEcccCCCCcccChhHhhc--c
Q 038612 228 QNHFTGKVS-IDFNGLSDLAWLSFEANN-------LGAEASNDLDFVFSLTNCSKLEWLELRKNQFGGNLPHFIANL--S 297 (678)
Q Consensus 228 ~n~l~~~~~-~~~~~l~~L~~L~l~~n~-------l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~~~--~ 297 (678)
+|.+.+..+ ..+..+++|+.+++++|. +.+. +..+..+++|+.|++++|.+.+..+..+... .
T Consensus 174 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-------~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~ 246 (520)
T 2z7x_B 174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSI-------LAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWH 246 (520)
T ss_dssp SSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHH-------HHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHT
T ss_pred cCcchhhhhhhhhhcccceeeccccccccccccceeecc-------hhhhccccchhhccccccccCHHHHHHHHHHhhh
Confidence 888876554 457889999999999986 3322 2367888999999999998876544333221 1
Q ss_pred ccCcEEEccCcceeccCCccC-----cCCccccccccccceeeeccC-cccCCC---cccceeeccCccccccCCccccC
Q 038612 298 KTMTIIDMGENKLSGTIPLGI-----GNLVNLNLFSLHLNQLIGTIP-HVIGSL---KNLQLLYLYGNSLEGNIPSSLGN 368 (678)
Q Consensus 298 ~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~~~~~~~-~~~~~l---~~L~~L~l~~n~l~~~~~~~~~~ 368 (678)
.+|+.|++++|++.|.+|..+ ..+++|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+.... .+..
T Consensus 247 ~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~ 322 (520)
T 2z7x_B 247 TTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSK 322 (520)
T ss_dssp SSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSS
T ss_pred CcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhh
Confidence 259999999999999999998 8999999999999988 455 444444 67999999999886432 1368
Q ss_pred CCCCcEEeccCCccCccCCCCCCCcCCCceEecCCCcccc--ccCcccccccccceEEEcCCCcccccCCc-cccCcccC
Q 038612 369 LTLLTKLALDFNNLQGNIPSSLGSCQNLMELIVSHNKLNG--TLPQQILEIRTLSFQLDLSNNLLSGYLPF-RVGNLKNL 445 (678)
Q Consensus 369 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~p~~~~~~~~l~~~L~l~~n~l~~~~~~-~~~~l~~L 445 (678)
+++|++|++++|.+.+..|..+..+++|++|++++|++.+ .+|..+..++.+ +.|++++|.+++.+|. .+..+++|
T Consensus 323 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L-~~L~Ls~N~l~~~l~~~~~~~l~~L 401 (520)
T 2z7x_B 323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSL-QQLDISQNSVSYDEKKGDCSWTKSL 401 (520)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTC-CEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred CCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCC-CEEECCCCcCCcccccchhccCccC
Confidence 8999999999999999899999999999999999999986 566778888888 8999999999985554 58889999
Q ss_pred CeeecccCcccccCCccccCCCCCCEEECcCCccccccCccccCCCCCCEEECCCCcccccCCccCCCCCCCCEEeCCcC
Q 038612 446 ARLDISMNHFFGEIPATLSACTSLEYLYMQGNSFGGRIPLSLISLKSLKVLDLSRNNLSGKIPEYLENLPFLQYLDLSYN 525 (678)
Q Consensus 446 ~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n 525 (678)
++|++++|++++..|..+. ++|++|++++|+++ .+|..+..+++|++|++++|+++...+..+..+++|++|++++|
T Consensus 402 ~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N 478 (520)
T 2z7x_B 402 LSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478 (520)
T ss_dssp CEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCC
Confidence 9999999999988877664 79999999999998 77877779999999999999999544444899999999999999
Q ss_pred cceeeCCC
Q 038612 526 HFEGQVPA 533 (678)
Q Consensus 526 ~l~~~~p~ 533 (678)
++.|.++.
T Consensus 479 ~~~c~c~~ 486 (520)
T 2z7x_B 479 PWDCSCPR 486 (520)
T ss_dssp CBCCCHHH
T ss_pred CCcccCCc
Confidence 99987763
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.3e-41 Score=381.95 Aligned_cols=248 Identities=23% Similarity=0.198 Sum_probs=188.8
Q ss_pred CcEEEccCcceeccCCccCcCCccccccccccceeeeccCcccCCCcccceeeccCccccc--cCCccccCCCCCcEEec
Q 038612 300 MTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLIGTIPHVIGSLKNLQLLYLYGNSLEG--NIPSSLGNLTLLTKLAL 377 (678)
Q Consensus 300 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L 377 (678)
++.|++.+|.+.+..+ ..++.|+.+.+..|..... .....+++|+.|++++|.+.. ..+..+..+.+|+++++
T Consensus 330 L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~ 404 (635)
T 4g8a_A 330 WQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDL 404 (635)
T ss_dssp CSEEEEESCEESSCCC---CBCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEEC
T ss_pred hhhhhcccccccCcCc---ccchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhc
Confidence 5555555555543322 2234455555555544322 223467788888888887643 34555667788888888
Q ss_pred cCCccCccCCCCCCCcCCCceEecCCCccccccCc-ccccccccceEEEcCCCcccccCCccccCcccCCeeecccCccc
Q 038612 378 DFNNLQGNIPSSLGSCQNLMELIVSHNKLNGTLPQ-QILEIRTLSFQLDLSNNLLSGYLPFRVGNLKNLARLDISMNHFF 456 (678)
Q Consensus 378 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~~~~l~~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~ 456 (678)
..+.+.. .+..+..+++|+.+++.++......+. .+..+..+ ..++++.|.+.+..+..+..++.|+.|++++|.+.
T Consensus 405 ~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l-~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~ 482 (635)
T 4g8a_A 405 SFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL-IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 482 (635)
T ss_dssp CSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTC-CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEG
T ss_pred ccccccc-ccccccccccccchhhhhcccccccccccccccccc-ccccccccccccccccccccchhhhhhhhhhcccc
Confidence 8887764 455677889999999998877655443 34455666 78999999999888888999999999999999754
Q ss_pred -ccCCccccCCCCCCEEECcCCccccccCccccCCCCCCEEECCCCcccccCCccCCCCCCCCEEeCCcCcceeeCCCC-
Q 038612 457 -GEIPATLSACTSLEYLYMQGNSFGGRIPLSLISLKSLKVLDLSRNNLSGKIPEYLENLPFLQYLDLSYNHFEGQVPAK- 534 (678)
Q Consensus 457 -~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~- 534 (678)
+..|..|..+++|++|+|++|++++..|..|.++++|++|+|++|++++..|..|..+++|++|++++|++++..|..
T Consensus 483 ~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l 562 (635)
T 4g8a_A 483 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL 562 (635)
T ss_dssp GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCT
T ss_pred cccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHH
Confidence 456788899999999999999999988999999999999999999999888888999999999999999999877754
Q ss_pred Cc-cCCCCceeccCCCCCccc
Q 038612 535 GV-FHNKTSISLVGNENLCGG 554 (678)
Q Consensus 535 ~~-~~~l~~~~~~~n~~lc~~ 554 (678)
.. ..+++.+++.+||+.|.+
T Consensus 563 ~~l~~~L~~L~L~~Np~~C~C 583 (635)
T 4g8a_A 563 QHFPSSLAFLNLTQNDFACTC 583 (635)
T ss_dssp TCCCTTCCEEECTTCCBCCSG
T ss_pred HhhhCcCCEEEeeCCCCcccC
Confidence 22 357889999999999976
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.6e-42 Score=382.22 Aligned_cols=433 Identities=17% Similarity=0.184 Sum_probs=270.6
Q ss_pred EEEEcCCCCCCCcccCCCCCCCCEEECCCCCCccccChhhcCCccCcEEeccCCCCccCCCccCCCCCCCCEEEcccccc
Q 038612 79 TELYLRNQSLGADIGYSSWSKLEKLSIAVNHLRGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVEENNF 158 (678)
Q Consensus 79 ~~l~l~~~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l 158 (678)
+.+++++++++..+. .-.++|++|++++|.+++..+.+|.++++|++|++++|.+++..|..|.++++|++|+|++|.+
T Consensus 34 ~~l~ls~~~L~~ip~-~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 112 (562)
T 3a79_B 34 SMVDYSNRNLTHVPK-DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL 112 (562)
T ss_dssp CEEECTTSCCCSCCT-TSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred cEEEcCCCCCccCCC-CCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcC
Confidence 778888888876543 1237899999999999988888999999999999999999988888999999999999999999
Q ss_pred cccCcccccCCCCCcEEECCCCCCCc-cCChhhhcCCCCCCEEEcccCcCCCCCCccCcCCCCC--cEEeccCCcc--ee
Q 038612 159 SGMVPVSIYNISSLEMIFLPANRLEG-ILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNL--IELNLGQNHF--TG 233 (678)
Q Consensus 159 ~~~~~~~~~~l~~L~~L~l~~n~~~~-~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L--~~L~L~~n~l--~~ 233 (678)
+ .+|.. .+++|++|++++|.+++ .+|..+. .+++|++|++++|.+++. .+..+++| ++|++++|.+ ++
T Consensus 113 ~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~-~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~ 185 (562)
T 3a79_B 113 Q-NISCC--PMASLRHLDLSFNDFDVLPVCKEFG-NLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKG 185 (562)
T ss_dssp C-EECSC--CCTTCSEEECCSSCCSBCCCCGGGG-GCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCS
T ss_pred C-ccCcc--ccccCCEEECCCCCccccCchHhhc-ccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccc
Confidence 8 56655 89999999999999886 3456666 899999999999998753 45555555 9999999988 77
Q ss_pred ccCCCCCCCCC-CCeEEcccCcccccCCCCcccccccCCCCCCcEEEcccCCCC----cccChhHhhccc----------
Q 038612 234 KVSIDFNGLSD-LAWLSFEANNLGAEASNDLDFVFSLTNCSKLEWLELRKNQFG----GNLPHFIANLSK---------- 298 (678)
Q Consensus 234 ~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~----~~~p~~~~~~~~---------- 298 (678)
..+..+..+.. .-.++++.|.+..... ...+..+++|+.+++++|... ......+...+.
T Consensus 186 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~-----~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~ 260 (562)
T 3a79_B 186 GETESLQIPNTTVLHLVFHPNSLFSVQV-----NMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIE 260 (562)
T ss_dssp SSCCEEEECCEEEEEEEECSSSCCCCCC-----EEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEE
T ss_pred cCcccccccCcceEEEEecCccchhhhh-----hhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCc
Confidence 77766665441 1134555555443211 113344555666666555310 001111222222
Q ss_pred ----------------cCcEEEccCcceeccCCccC-----cCCccccccccccceeeeccC-cccCC---Ccccceeec
Q 038612 299 ----------------TMTIIDMGENKLSGTIPLGI-----GNLVNLNLFSLHLNQLIGTIP-HVIGS---LKNLQLLYL 353 (678)
Q Consensus 299 ----------------~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~~~~~~~-~~~~~---l~~L~~L~l 353 (678)
+|++|++++|.++|.+|..+ ..++.|+.+++..+.+ .+| ..+.. ..+|++|++
T Consensus 261 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l 338 (562)
T 3a79_B 261 TTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSI 338 (562)
T ss_dssp ECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEE
T ss_pred CcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEc
Confidence 35556666665555555554 4444444444444433 222 11111 134666666
Q ss_pred cCccccccCCccccCCCCCcEEeccCCccCccCCCCCCCcCCCceEecCCCcccc--ccCcccccccccceEEEcCCCcc
Q 038612 354 YGNSLEGNIPSSLGNLTLLTKLALDFNNLQGNIPSSLGSCQNLMELIVSHNKLNG--TLPQQILEIRTLSFQLDLSNNLL 431 (678)
Q Consensus 354 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~p~~~~~~~~l~~~L~l~~n~l 431 (678)
++|.+.... ....+++|++|++++|.+.+..|..+..+++|++|++++|++.+ .+|..+..++.+ +.|++++|.+
T Consensus 339 ~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L-~~L~l~~N~l 415 (562)
T 3a79_B 339 SDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSL-ETLDVSLNSL 415 (562)
T ss_dssp ESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTC-CEEECTTSCC
T ss_pred cCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCC-CEEECCCCcC
Confidence 666554221 11455666666666666666566666666666666666666653 223345555555 5666666666
Q ss_pred cccCC-ccccCcccCCeeecccCcccccCCccccCCCCCCEEECcCCccccccCccccCCCCCCEEECCCCcccccCCcc
Q 038612 432 SGYLP-FRVGNLKNLARLDISMNHFFGEIPATLSACTSLEYLYMQGNSFGGRIPLSLISLKSLKVLDLSRNNLSGKIPEY 510 (678)
Q Consensus 432 ~~~~~-~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~ 510 (678)
++.+| ..+..+++|++|++++|++++..|..+. ++|++|++++|+++ .+|..+..+++|++|++++|++++..+..
T Consensus 416 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~ 492 (562)
T 3a79_B 416 NSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGV 492 (562)
T ss_dssp BSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTS
T ss_pred CCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHH
Confidence 65333 3355566666666666666555554433 46666666666665 34444446666666666666666322223
Q ss_pred CCCCCCCCEEeCCcCcceeeCC
Q 038612 511 LENLPFLQYLDLSYNHFEGQVP 532 (678)
Q Consensus 511 l~~l~~L~~L~l~~n~l~~~~p 532 (678)
+..+++|+.|++++|++.|.+|
T Consensus 493 ~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 493 FDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp TTTCTTCCCEECCSCCBCCCHH
T ss_pred HhcCCCCCEEEecCCCcCCCcc
Confidence 5666666666666666665554
No 23
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=4.8e-41 Score=377.41 Aligned_cols=447 Identities=22% Similarity=0.244 Sum_probs=330.6
Q ss_pred cEEEEEcCCCCCCCc--ccCCCCCCCCEEECCCCCCccccChhhcCCccCcEEeccCCCCccCCCccCCCCCCCCEEEcc
Q 038612 77 RVTELYLRNQSLGAD--IGYSSWSKLEKLSIAVNHLRGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVE 154 (678)
Q Consensus 77 ~v~~l~l~~~~l~~~--~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~ 154 (678)
.++.|||++|.++.. ..|.++++|++|+|++|.+++..+.+|.++++|++|+|++|.+++..+..|.++++|++|+|+
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 567777777777654 346777777777777777777667777777777777777777776656667777777777777
Q ss_pred cccccccCcccccCCCCCcEEECCCCCCCcc-CChhhhcCCCCCCEEEcccCcCCCCCCccCcCCCCC----cEEeccCC
Q 038612 155 ENNFSGMVPVSIYNISSLEMIFLPANRLEGI-LPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNL----IELNLGQN 229 (678)
Q Consensus 155 ~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~-~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L----~~L~L~~n 229 (678)
+|.+++..+..|+++++|++|++++|.+++. .|..+. .+++|++|++++|++++..+..+..+.++ ..++++.|
T Consensus 133 ~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n 211 (635)
T 4g8a_A 133 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS-NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 211 (635)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGG-GCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred CCcCCCCChhhhhcCcccCeeccccCccccCCCchhhc-cchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence 7777766666677777777777777777643 344444 67777777777777776666655544333 24556666
Q ss_pred cceeccCCCCCCCCCCCeEEcccCcccc-------------------------------cCCCC----------------
Q 038612 230 HFTGKVSIDFNGLSDLAWLSFEANNLGA-------------------------------EASND---------------- 262 (678)
Q Consensus 230 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------------------------------~~~~~---------------- 262 (678)
.+....+..+.. ..++.+++..|.... .....
T Consensus 212 ~l~~i~~~~~~~-~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~ 290 (635)
T 4g8a_A 212 PMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 290 (635)
T ss_dssp CCCEECTTTTTT-CEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEEC
T ss_pred cccccCcccccc-hhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence 555433332221 122223222221100 00000
Q ss_pred ---------------------------cccccccCCCCCCcEEEcccCCCCcccChhHhhccccCcEEEccCcceeccCC
Q 038612 263 ---------------------------LDFVFSLTNCSKLEWLELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIP 315 (678)
Q Consensus 263 ---------------------------~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~ 315 (678)
......+.....|+.|++.+|.+....+. .+ ..|+.+++..|.+....
T Consensus 291 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~l-~~L~~l~l~~n~~~~~~- 365 (635)
T 4g8a_A 291 LDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL---KL-KSLKRLTFTSNKGGNAF- 365 (635)
T ss_dssp CCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCC---BC-TTCCEEEEESCCSCCBC-
T ss_pred hcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcc---cc-hhhhhcccccccCCCCc-
Confidence 00011233455677888887776543332 22 24889999998876433
Q ss_pred ccCcCCccccccccccceee--eccCcccCCCcccceeeccCccccccCCccccCCCCCcEEeccCCccCccCC-CCCCC
Q 038612 316 LGIGNLVNLNLFSLHLNQLI--GTIPHVIGSLKNLQLLYLYGNSLEGNIPSSLGNLTLLTKLALDFNNLQGNIP-SSLGS 392 (678)
Q Consensus 316 ~~l~~l~~L~~L~l~~n~~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~ 392 (678)
....+++|+.++++.|.+. +..+..+..+.+|+++++..+.... .+..+..+++|+.+++..+......+ ..+..
T Consensus 366 -~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~ 443 (635)
T 4g8a_A 366 -SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 443 (635)
T ss_dssp -CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTT
T ss_pred -ccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccccc
Confidence 3557899999999999774 3456666788999999999998875 45568889999999999887765443 56788
Q ss_pred cCCCceEecCCCccccccCcccccccccceEEEcCCCcc-cccCCccccCcccCCeeecccCcccccCCccccCCCCCCE
Q 038612 393 CQNLMELIVSHNKLNGTLPQQILEIRTLSFQLDLSNNLL-SGYLPFRVGNLKNLARLDISMNHFFGEIPATLSACTSLEY 471 (678)
Q Consensus 393 l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~ 471 (678)
+++++.++++.|.+.+..+..+..++.+ +.|++++|.+ .+..|..+..+++|++|+|++|++++..|..|.++++|++
T Consensus 444 l~~l~~l~ls~n~l~~~~~~~~~~~~~L-~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~ 522 (635)
T 4g8a_A 444 LRNLIYLDISHTHTRVAFNGIFNGLSSL-EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 522 (635)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTC-CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred ccccccccccccccccccccccccchhh-hhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCE
Confidence 9999999999999998888777778787 8999999975 4567888999999999999999999999999999999999
Q ss_pred EECcCCccccccCccccCCCCCCEEECCCCcccccCCccCCCC-CCCCEEeCCcCcceeeCCC
Q 038612 472 LYMQGNSFGGRIPLSLISLKSLKVLDLSRNNLSGKIPEYLENL-PFLQYLDLSYNHFEGQVPA 533 (678)
Q Consensus 472 L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l-~~L~~L~l~~n~l~~~~p~ 533 (678)
|+|++|++++..+..|.++++|++|+|++|++++..|+.+..+ ++|++|++++|++.|.+..
T Consensus 523 L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~ 585 (635)
T 4g8a_A 523 LNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 585 (635)
T ss_dssp EECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred EECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc
Confidence 9999999999999999999999999999999999999999988 6899999999999998763
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.5e-41 Score=374.48 Aligned_cols=432 Identities=18% Similarity=0.193 Sum_probs=329.5
Q ss_pred CCCCEEECCCCCCccccChhhcCCccCcEEeccCCCCccCCCccCCCCCCCCEEEcccccccccCcccccCCCCCcEEEC
Q 038612 98 SKLEKLSIAVNHLRGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFL 177 (678)
Q Consensus 98 ~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 177 (678)
...+++++++|.+++ +|..+. ++|++|++++|.+++..|..|.++++|++|+|++|.+++..|..|.++++|++|++
T Consensus 31 ~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 31 ELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp --CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence 345899999999985 776664 89999999999999888889999999999999999999888999999999999999
Q ss_pred CCCCCCccCChhhhcCCCCCCEEEcccCcCCC-CCCccCcCCCCCcEEeccCCcceeccCCCCCCCCCC--CeEEcccCc
Q 038612 178 PANRLEGILPLNIGFNLPNLKSLIVAQNNLTG-PIPHSLSNASNLIELNLGQNHFTGKVSIDFNGLSDL--AWLSFEANN 254 (678)
Q Consensus 178 ~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L--~~L~l~~n~ 254 (678)
++|.++ .+|.. .+++|++|++++|.+++ ..|..|+++++|++|++++|++++. .+..+++| ++|++++|.
T Consensus 108 s~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~ 180 (562)
T 3a79_B 108 SHNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVS 180 (562)
T ss_dssp TTSCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESS
T ss_pred CCCcCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccc
Confidence 999998 67765 79999999999999987 3468999999999999999999753 45556666 999999998
Q ss_pred c--cccCCCCcccccccCCCC-CCcEEEcccCCCCcccChhHhhccccCcEEEccCcc-----eeccCCccCcCCccccc
Q 038612 255 L--GAEASNDLDFVFSLTNCS-KLEWLELRKNQFGGNLPHFIANLSKTMTIIDMGENK-----LSGTIPLGIGNLVNLNL 326 (678)
Q Consensus 255 l--~~~~~~~~~~~~~l~~~~-~L~~L~L~~n~~~~~~p~~~~~~~~~L~~L~L~~n~-----l~~~~~~~l~~l~~L~~ 326 (678)
+ ....+. .+..+. ..-.+++++|.+.+.++........+|+.+++++|+ +.+.+ ..+..+++|+.
T Consensus 181 l~~~~~~~~------~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~-~~l~~l~~L~~ 253 (562)
T 3a79_B 181 YHIKGGETE------SLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFL-SELTRGPTLLN 253 (562)
T ss_dssp CCCCSSSCC------EEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHH-HHHHSCSSCEE
T ss_pred ccccccCcc------cccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHH-HHHhccCcceE
Confidence 8 554433 222222 122568888888776665433333459999999984 11111 12344444444
Q ss_pred cccccceeeecc----CcccCCCcccceeeccCccccccCCccc-----cC--------------------------CCC
Q 038612 327 FSLHLNQLIGTI----PHVIGSLKNLQLLYLYGNSLEGNIPSSL-----GN--------------------------LTL 371 (678)
Q Consensus 327 L~l~~n~~~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~--------------------------l~~ 371 (678)
+++.++.+.+.. +..+ ..++|++|++++|.+.+.+|..+ .. ..+
T Consensus 254 L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~ 332 (562)
T 3a79_B 254 VTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMN 332 (562)
T ss_dssp EEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCC
T ss_pred EEecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCc
Confidence 444444333211 0111 12244444444444444444333 11 145
Q ss_pred CcEEeccCCccCccCCCCCCCcCCCceEecCCCccccccCcccccccccceEEEcCCCccccc--CCccccCcccCCeee
Q 038612 372 LTKLALDFNNLQGNIPSSLGSCQNLMELIVSHNKLNGTLPQQILEIRTLSFQLDLSNNLLSGY--LPFRVGNLKNLARLD 449 (678)
Q Consensus 372 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~L~l~~n~l~~~--~~~~~~~l~~L~~L~ 449 (678)
|++|++++|.+.... ....+++|++|++++|++.+..|..+..++.+ +.|++++|.+++. +|..+..+++|++|+
T Consensus 333 L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~ 409 (562)
T 3a79_B 333 IKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRL-QTLILQRNGLKNFFKVALMTKNMSSLETLD 409 (562)
T ss_dssp CSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSC-CEEECCSSCCCBTTHHHHTTTTCTTCCEEE
T ss_pred ceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCC-CEEECCCCCcCCcccchhhhcCCCCCCEEE
Confidence 788888888775322 12678999999999999998889999999998 8999999999974 356789999999999
Q ss_pred cccCcccccCCc-cccCCCCCCEEECcCCccccccCccccCCCCCCEEECCCCcccccCCccCCCCCCCCEEeCCcCcce
Q 038612 450 ISMNHFFGEIPA-TLSACTSLEYLYMQGNSFGGRIPLSLISLKSLKVLDLSRNNLSGKIPEYLENLPFLQYLDLSYNHFE 528 (678)
Q Consensus 450 Ls~n~~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 528 (678)
+++|++++.+|. .+..+++|++|++++|++++.+|..+. ++|+.|++++|+++ .+|..+..+++|++|++++|+++
T Consensus 410 l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~ 486 (562)
T 3a79_B 410 VSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK 486 (562)
T ss_dssp CTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC
T ss_pred CCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC
Confidence 999999985554 588899999999999999987776654 79999999999999 67777779999999999999999
Q ss_pred eeCCC--CCccCCCCceeccCCCCCccc
Q 038612 529 GQVPA--KGVFHNKTSISLVGNENLCGG 554 (678)
Q Consensus 529 ~~~p~--~~~~~~l~~~~~~~n~~lc~~ 554 (678)
.+|. ...+.+++.+++.+|++.|.+
T Consensus 487 -~l~~~~~~~l~~L~~L~l~~N~~~c~c 513 (562)
T 3a79_B 487 -SVPDGVFDRLTSLQYIWLHDNPWDCTC 513 (562)
T ss_dssp -CCCTTSTTTCTTCCCEECCSCCBCCCH
T ss_pred -CCCHHHHhcCCCCCEEEecCCCcCCCc
Confidence 4554 356778899999999988864
No 25
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.5e-40 Score=355.67 Aligned_cols=371 Identities=18% Similarity=0.176 Sum_probs=284.1
Q ss_pred CCCCEEECCCCCCccccChhhcCCccCcEEeccCCCCccCC-CccCCCCCCCCEEEcccccccccCcccccCCCCCcEEE
Q 038612 98 SKLEKLSIAVNHLRGQLPASIGNLSALQAFDVGENTLHGRI-PESLGQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIF 176 (678)
Q Consensus 98 ~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~-p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 176 (678)
++|++|+|++|.+.+..|..|.++++|++|++++|.+.+.+ +..|.++++|++|+|++|.+++..|..+.++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 78999999999999988999999999999999999987544 56799999999999999999988899999999999999
Q ss_pred CCCCCCCccCChh--hhcCCCCCCEEEcccCcCCCCCCcc-CcCCCCCcEEeccCCcceeccCCCCCCC--CCCCeEEcc
Q 038612 177 LPANRLEGILPLN--IGFNLPNLKSLIVAQNNLTGPIPHS-LSNASNLIELNLGQNHFTGKVSIDFNGL--SDLAWLSFE 251 (678)
Q Consensus 177 l~~n~~~~~~p~~--~~~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~l~ 251 (678)
+++|.+++..|.. +. .+++|++|++++|.+++..|.. +.++++|++|++++|++.+..+..+..+ .+|+.|+++
T Consensus 110 L~~n~l~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~ 188 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFK-PLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS 188 (455)
T ss_dssp CTTSCCBTHHHHSSTTT-TCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECT
T ss_pred CCCCCCCccccCccccc-CcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccc
Confidence 9999998755544 44 8999999999999999887776 8999999999999999998888888776 688999999
Q ss_pred cCcccccCCCCcc--cccccCCCCCCcEEEcccCCCCcccChhHhhcc--ccCcEEEccCcceeccCCccCcCCcccccc
Q 038612 252 ANNLGAEASNDLD--FVFSLTNCSKLEWLELRKNQFGGNLPHFIANLS--KTMTIIDMGENKLSGTIPLGIGNLVNLNLF 327 (678)
Q Consensus 252 ~n~l~~~~~~~~~--~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~~~~--~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 327 (678)
+|.+......... ....+..+++|++|++++|.+.+..|..+.... .+|+.|++++|.+.+...
T Consensus 189 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~------------ 256 (455)
T 3v47_A 189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF------------ 256 (455)
T ss_dssp TCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT------------
T ss_pred cCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccccc------------
Confidence 9988776543221 122345667899999999999888888776652 348888888887653211
Q ss_pred ccccceeeeccCcccC--CCcccceeeccCccccccCCccccCCCCCcEEeccCCccCccCCCCCCCcCCCceEecCCCc
Q 038612 328 SLHLNQLIGTIPHVIG--SLKNLQLLYLYGNSLEGNIPSSLGNLTLLTKLALDFNNLQGNIPSSLGSCQNLMELIVSHNK 405 (678)
Q Consensus 328 ~l~~n~~~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 405 (678)
..+.+.+..+..+. ..++|++|++++|.+.+..|..++.+++|++|++++|.+.+..|..+..+++|++|++++|.
T Consensus 257 --~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 334 (455)
T 3v47_A 257 --GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF 334 (455)
T ss_dssp --TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred --chhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCc
Confidence 11111111111222 23466666666666666666666666666666666666666556666666666666666665
Q ss_pred cccccCcccccccccceEEEcCCCcccccCCccccCcccCCeeecccCcccccCCccccCCCCCCEEECcCCccccccCc
Q 038612 406 LNGTLPQQILEIRTLSFQLDLSNNLLSGYLPFRVGNLKNLARLDISMNHFFGEIPATLSACTSLEYLYMQGNSFGGRIPL 485 (678)
Q Consensus 406 l~~~~p~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 485 (678)
+. +..+..+..+++|++|+|++|++++..|..+..+++|++|++++|++++..+.
T Consensus 335 l~-------------------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 389 (455)
T 3v47_A 335 LG-------------------------SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDG 389 (455)
T ss_dssp CC-------------------------EECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cC-------------------------CcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHh
Confidence 54 34445566677888888888888877788888888888888888888877677
Q ss_pred cccCCCCCCEEECCCCcccccCC
Q 038612 486 SLISLKSLKVLDLSRNNLSGKIP 508 (678)
Q Consensus 486 ~~~~l~~L~~L~ls~n~l~~~~p 508 (678)
.+..+++|+.|++++|++++..|
T Consensus 390 ~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 390 IFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTTTCTTCCEEECCSSCBCCCTT
T ss_pred HhccCCcccEEEccCCCcccCCC
Confidence 77888888999999998887665
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.1e-40 Score=356.30 Aligned_cols=384 Identities=20% Similarity=0.183 Sum_probs=250.5
Q ss_pred CEEECCCCCCccccChhhcCCccCcEEeccCCCCccCCCccCCCCCCCCEEEcccccccccC-cccccCCCCCcEEECCC
Q 038612 101 EKLSIAVNHLRGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMV-PVSIYNISSLEMIFLPA 179 (678)
Q Consensus 101 ~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~ 179 (678)
+.++.+++.++ .+|. + .++|++|++++|.+++..|..|.++++|++|++++|.+.+.+ +..|.++++|++|++++
T Consensus 13 ~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred cccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 34555555554 3333 2 256666666666666655666666666666666666665332 44566666666666666
Q ss_pred CCCCccCChhhhcCCCCCCEEEcccCcCCCCCCcc--CcCCCCCcEEeccCCcceeccCCC-CCCCCCCCeEEcccCccc
Q 038612 180 NRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHS--LSNASNLIELNLGQNHFTGKVSID-FNGLSDLAWLSFEANNLG 256 (678)
Q Consensus 180 n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~--l~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~ 256 (678)
|.+++..|..+. .+++|++|++++|.+++..+.. +.++++|++|++++|++++..|.. +.++
T Consensus 89 n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l-------------- 153 (455)
T 3v47_A 89 NQFLQLETGAFN-GLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNM-------------- 153 (455)
T ss_dssp CTTCEECTTTTT-TCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGC--------------
T ss_pred CccCccChhhcc-CcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCC--------------
Confidence 666655555554 5666666666666665433332 555666666666666655544433 3444
Q ss_pred ccCCCCcccccccCCCCCCcEEEcccCCCCcccChhHhhcc-ccCcEEEccCcceeccCCcc--------CcCCcccccc
Q 038612 257 AEASNDLDFVFSLTNCSKLEWLELRKNQFGGNLPHFIANLS-KTMTIIDMGENKLSGTIPLG--------IGNLVNLNLF 327 (678)
Q Consensus 257 ~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~~~~-~~L~~L~L~~n~l~~~~~~~--------l~~l~~L~~L 327 (678)
++|++|++++|.+.+..|..+..+. ..++.|++++|.+.+..+.. +..+++|+.|
T Consensus 154 ----------------~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L 217 (455)
T 3v47_A 154 ----------------RRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTL 217 (455)
T ss_dssp ----------------TTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEE
T ss_pred ----------------CcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeE
Confidence 4455555555554444444444331 23566666666655433322 2234555555
Q ss_pred ccccceeeeccCcccCC---CcccceeeccCccccccCCccccCCCCCcEEeccCCccCccCCCCCC--CcCCCceEecC
Q 038612 328 SLHLNQLIGTIPHVIGS---LKNLQLLYLYGNSLEGNIPSSLGNLTLLTKLALDFNNLQGNIPSSLG--SCQNLMELIVS 402 (678)
Q Consensus 328 ~l~~n~~~~~~~~~~~~---l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~l~ 402 (678)
++++|++.+..|..+.. .++|+.|++++|...+.... .+.+....+..+. ..++|+.|+++
T Consensus 218 ~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~L~~L~l~ 283 (455)
T 3v47_A 218 DLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG--------------HTNFKDPDNFTFKGLEASGVKTCDLS 283 (455)
T ss_dssp ECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT--------------CCSSCCCCTTTTGGGTTSCCCEEECC
T ss_pred ecCCCcccccchhhhhccccccceeeEeeccccccccccc--------------hhhhccCcccccccccccCceEEEec
Confidence 55555555554444432 25566666665544322110 0111111111222 23578888888
Q ss_pred CCccccccCcccccccccceEEEcCCCcccccCCccccCcccCCeeecccCcccccCCccccCCCCCCEEECcCCccccc
Q 038612 403 HNKLNGTLPQQILEIRTLSFQLDLSNNLLSGYLPFRVGNLKNLARLDISMNHFFGEIPATLSACTSLEYLYMQGNSFGGR 482 (678)
Q Consensus 403 ~n~l~~~~p~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 482 (678)
+|.+.+..|..+..++.+ +.|++++|.+++..|..+..+++|++|+|++|.+++..|..+..+++|++|+|++|++++.
T Consensus 284 ~n~l~~~~~~~~~~l~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 362 (455)
T 3v47_A 284 KSKIFALLKSVFSHFTDL-EQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRAL 362 (455)
T ss_dssp SSCCCEECTTTTTTCTTC-CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEE
T ss_pred CccccccchhhcccCCCC-CEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCccccc
Confidence 888877777777777777 7788888888888888889999999999999999988899999999999999999999999
Q ss_pred cCccccCCCCCCEEECCCCcccccCCccCCCCCCCCEEeCCcCcceeeCCCC
Q 038612 483 IPLSLISLKSLKVLDLSRNNLSGKIPEYLENLPFLQYLDLSYNHFEGQVPAK 534 (678)
Q Consensus 483 ~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~ 534 (678)
.|..+..+++|++|++++|++++..+..+..+++|++|++++|++.+.+|..
T Consensus 363 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 414 (455)
T 3v47_A 363 GDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 414 (455)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred ChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcc
Confidence 8999999999999999999999877778899999999999999999999854
No 27
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.9e-40 Score=335.28 Aligned_cols=291 Identities=29% Similarity=0.490 Sum_probs=183.3
Q ss_pred CCCHHhHHHHHHHHhcCCCCCCCCCCCCCCCCCCC--cccccccCCC--CcEEEEEcCCCCCCC--c--ccCCCCCCCCE
Q 038612 31 HTNETDRLALLAIKSQFHDPLEVTSSWDTSVNLCQ--WTGVTCGRRH--QRVTELYLRNQSLGA--D--IGYSSWSKLEK 102 (678)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~c~--w~gv~c~~~~--~~v~~l~l~~~~l~~--~--~~~~~l~~L~~ 102 (678)
.|.++|++||++||+++.+|. .+.+|+.+.+||. |.||.|+... .+|+.++++++.+.+ . ..+..+++|++
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~ 80 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF 80 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSE
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCe
Confidence 599999999999999998876 7899988889998 9999998644 677777777776654 1 34555666666
Q ss_pred EECCC-CCCccccChhhcCCccCcEEeccCCCCccCCCccCCCCCCCCEEEcccccccccCcccccCCCCCcEEECCCCC
Q 038612 103 LSIAV-NHLRGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFLPANR 181 (678)
Q Consensus 103 L~Ls~-n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 181 (678)
|++++ |.+.+.+|..|.++++|++|++++|.+++.+|..|.++++|++|++++|.+++.+|..+..+++|++|++++|.
T Consensus 81 L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 160 (313)
T 1ogq_A 81 LYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160 (313)
T ss_dssp EEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC
T ss_pred eeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCc
Confidence 66663 66666666666666666666666666665666666666666666666666665566666666666666666666
Q ss_pred CCccCChhhhcCCC-CCCEEEcccCcCCCCCCccCcCCCCCcEEeccCCcceeccCCCCCCCCCCCeEEcccCcccccCC
Q 038612 182 LEGILPLNIGFNLP-NLKSLIVAQNNLTGPIPHSLSNASNLIELNLGQNHFTGKVSIDFNGLSDLAWLSFEANNLGAEAS 260 (678)
Q Consensus 182 ~~~~~p~~~~~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 260 (678)
+++.+|..+. .++ +|++|++++|.+++.+|..+..++ |+.|++++|.+++..+..+..+++|+.|++++|.+....+
T Consensus 161 l~~~~p~~l~-~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 238 (313)
T 1ogq_A 161 ISGAIPDSYG-SFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG 238 (313)
T ss_dssp CEEECCGGGG-CCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG
T ss_pred ccCcCCHHHh-hhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecC
Confidence 6655665555 444 566666666666555555555554 6666666666655555555555555555555555433211
Q ss_pred CCcccccccCCCCCCcEEEcccCCCCcccChhHhhccccCcEEEccCcceeccCCccCcCCccccccccccceeeeccCc
Q 038612 261 NDLDFVFSLTNCSKLEWLELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLIGTIPH 340 (678)
Q Consensus 261 ~~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 340 (678)
.+..+++ |++|++++|++++.+|..+..+++|+.|++++|++++.+|.
T Consensus 239 -------~~~~l~~-------------------------L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 239 -------KVGLSKN-------------------------LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp -------GCCCCTT-------------------------CCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred -------cccccCC-------------------------CCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence 1333344 55555555555555555555555555555555555555554
Q ss_pred ccCCCcccceeeccCcc
Q 038612 341 VIGSLKNLQLLYLYGNS 357 (678)
Q Consensus 341 ~~~~l~~L~~L~l~~n~ 357 (678)
. +.+++|+.+++++|.
T Consensus 287 ~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 287 G-GNLQRFDVSAYANNK 302 (313)
T ss_dssp S-TTGGGSCGGGTCSSS
T ss_pred C-ccccccChHHhcCCC
Confidence 3 555566666666654
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.3e-38 Score=339.02 Aligned_cols=387 Identities=25% Similarity=0.316 Sum_probs=241.1
Q ss_pred CCCCCEEECCCCCCccccChhhcCCccCcEEeccCCCCccCCCccCCCCCCC-------------CEEEcccccccccCc
Q 038612 97 WSKLEKLSIAVNHLRGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSL-------------KFLNVEENNFSGMVP 163 (678)
Q Consensus 97 l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L-------------~~L~L~~n~l~~~~~ 163 (678)
..+|++|++++|.+ +.+|.+++++++|++|++++|.+.+.+|..++++++| ++|++++|.+++ +|
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp 87 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LP 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CC
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CC
Confidence 46788888888888 6888888888888888888888888888888887764 888888888874 34
Q ss_pred ccccCCCCCcEEECCCCCCCccCChhhhcCCCCCCEEEcccCcCCCCCCccCcCCCCCcEEeccCCcceeccCCCCCCCC
Q 038612 164 VSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLIELNLGQNHFTGKVSIDFNGLS 243 (678)
Q Consensus 164 ~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 243 (678)
. -.++|++|++++|.+++ +|. .+++|++|++++|.+++ ++.. .++|++|++++|++++ +| .+..++
T Consensus 88 ~---~~~~L~~L~l~~n~l~~-lp~----~~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~ 153 (454)
T 1jl5_A 88 E---LPPHLESLVASCNSLTE-LPE----LPQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSS 153 (454)
T ss_dssp S---CCTTCSEEECCSSCCSS-CCC----CCTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCT
T ss_pred C---CcCCCCEEEccCCcCCc-ccc----ccCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCC
Confidence 3 23678888888888885 564 34788888888888874 2221 1688888888888876 55 588888
Q ss_pred CCCeEEcccCcccccCCCCcccccccCCCCCCcEEEcccCCCCcccChhHhhccccCcEEEccCcceeccCCccCcCCcc
Q 038612 244 DLAWLSFEANNLGAEASNDLDFVFSLTNCSKLEWLELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVN 323 (678)
Q Consensus 244 ~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~ 323 (678)
+|++|++++|.+..... ...+|++|++++|.+.+ +| .+..++. |+.|++++|++++ +|... ++
T Consensus 154 ~L~~L~l~~N~l~~lp~----------~~~~L~~L~L~~n~l~~-l~-~~~~l~~-L~~L~l~~N~l~~-l~~~~---~~ 216 (454)
T 1jl5_A 154 FLKIIDVDNNSLKKLPD----------LPPSLEFIAAGNNQLEE-LP-ELQNLPF-LTAIYADNNSLKK-LPDLP---LS 216 (454)
T ss_dssp TCCEEECCSSCCSCCCC----------CCTTCCEEECCSSCCSS-CC-CCTTCTT-CCEEECCSSCCSS-CCCCC---TT
T ss_pred CCCEEECCCCcCcccCC----------CcccccEEECcCCcCCc-Cc-cccCCCC-CCEEECCCCcCCc-CCCCc---Cc
Confidence 88888888888765321 12478888888888875 55 4666665 8888888888875 34322 57
Q ss_pred ccccccccceeeeccCcccCCCcccceeeccCccccccCCccccCCCCCcEEeccCCccCccCCCCCCCcCCCceEecCC
Q 038612 324 LNLFSLHLNQLIGTIPHVIGSLKNLQLLYLYGNSLEGNIPSSLGNLTLLTKLALDFNNLQGNIPSSLGSCQNLMELIVSH 403 (678)
Q Consensus 324 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 403 (678)
|+.|++++|.+. .+| .++.+++|++|++++|++.+ +|.. +++|++|++++|.+.+ +|.. +++|+.|++++
T Consensus 217 L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~ 286 (454)
T 1jl5_A 217 LESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSE 286 (454)
T ss_dssp CCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCS
T ss_pred ccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcC
Confidence 888888888877 555 37788888888888888875 4432 4788888888888875 4443 36788888888
Q ss_pred CccccccCcccccccccceEEEcCCCcccccCCccccCc-ccCCeeecccCcccccCCccccCCCCCCEEECcCCccccc
Q 038612 404 NKLNGTLPQQILEIRTLSFQLDLSNNLLSGYLPFRVGNL-KNLARLDISMNHFFGEIPATLSACTSLEYLYMQGNSFGGR 482 (678)
Q Consensus 404 n~l~~~~p~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 482 (678)
|++.+ +|... +.+ +.|++++|.+++.. .+ ++|++|++++|++++ +|.. +++|++|++++|++++
T Consensus 287 N~l~~-l~~~~---~~L-~~L~l~~N~l~~i~-----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~- 351 (454)
T 1jl5_A 287 NIFSG-LSELP---PNL-YYLNASSNEIRSLC-----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE- 351 (454)
T ss_dssp SCCSE-ESCCC---TTC-CEEECCSSCCSEEC-----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-
T ss_pred CccCc-ccCcC---CcC-CEEECcCCcCCccc-----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-
Confidence 88875 22211 234 77888888887532 22 478888888888875 5543 5788888888888874
Q ss_pred cCccccCCCCCCEEECCCCcccc--cCCccCCCC-------------CCCCEEeCCcCccee--eCCCCCccCCCCceec
Q 038612 483 IPLSLISLKSLKVLDLSRNNLSG--KIPEYLENL-------------PFLQYLDLSYNHFEG--QVPAKGVFHNKTSISL 545 (678)
Q Consensus 483 ~~~~~~~l~~L~~L~ls~n~l~~--~~p~~l~~l-------------~~L~~L~l~~n~l~~--~~p~~~~~~~l~~~~~ 545 (678)
+|. .+++|++|++++|++++ .+|..+..+ ++|+.|++++|++.+ .+|. ++..+.+
T Consensus 352 lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~-----sl~~L~~ 423 (454)
T 1jl5_A 352 VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPE-----SVEDLRM 423 (454)
T ss_dssp CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------------------------
T ss_pred ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchh-----hHhheeC
Confidence 454 46788888888888887 677777666 788899999998886 5553 3444555
Q ss_pred cCCC
Q 038612 546 VGNE 549 (678)
Q Consensus 546 ~~n~ 549 (678)
.+|.
T Consensus 424 ~~~~ 427 (454)
T 1jl5_A 424 NSER 427 (454)
T ss_dssp ----
T ss_pred cCcc
Confidence 4443
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.5e-37 Score=329.28 Aligned_cols=391 Identities=25% Similarity=0.284 Sum_probs=276.3
Q ss_pred CcEEEEEcCCCCCCCc-ccCCCCCCCCEEECCCCCCccccChhhcCCccC-------------cEEeccCCCCccCCCcc
Q 038612 76 QRVTELYLRNQSLGAD-IGYSSWSKLEKLSIAVNHLRGQLPASIGNLSAL-------------QAFDVGENTLHGRIPES 141 (678)
Q Consensus 76 ~~v~~l~l~~~~l~~~-~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L-------------~~L~ls~n~l~~~~p~~ 141 (678)
.+++.++++++.+... ..++++++|++|++++|.+.+.+|.+++++++| ++|++++|.+++ +|..
T Consensus 11 ~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~ 89 (454)
T 1jl5_A 11 TFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL 89 (454)
T ss_dssp -----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC
T ss_pred ccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCC
Confidence 5788899999988543 358999999999999999999999999998875 999999999985 4542
Q ss_pred CCCCCCCCEEEcccccccccCcccccCCCCCcEEECCCCCCCccCChhhhcCCCCCCEEEcccCcCCCCCCccCcCCCCC
Q 038612 142 LGQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNL 221 (678)
Q Consensus 142 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 221 (678)
.++|++|++++|.+++ +|.. +++|++|++++|.+++ +|. ..++|++|++++|.+++ +| .++++++|
T Consensus 90 ---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~----~~~~L~~L~L~~n~l~~-lp-~~~~l~~L 155 (454)
T 1jl5_A 90 ---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSD----LPPLLEYLGVSNNQLEK-LP-ELQNSSFL 155 (454)
T ss_dssp ---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCS----CCTTCCEEECCSSCCSS-CC-CCTTCTTC
T ss_pred ---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccC----CCCCCCEEECcCCCCCC-Cc-ccCCCCCC
Confidence 3789999999999996 6653 4899999999999985 332 23799999999999996 66 69999999
Q ss_pred cEEeccCCcceeccCCCCCCCCCCCeEEcccCcccccCCCCcccccccCCCCCCcEEEcccCCCCcccChhHhhccccCc
Q 038612 222 IELNLGQNHFTGKVSIDFNGLSDLAWLSFEANNLGAEASNDLDFVFSLTNCSKLEWLELRKNQFGGNLPHFIANLSKTMT 301 (678)
Q Consensus 222 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~~~~~~L~ 301 (678)
++|++++|++++ +|.. ..+|++|++++|.+.... .+..+++|++|++++|.+.+ +|.. +.+|+
T Consensus 156 ~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~l~--------~~~~l~~L~~L~l~~N~l~~-l~~~----~~~L~ 218 (454)
T 1jl5_A 156 KIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEELP--------ELQNLPFLTAIYADNNSLKK-LPDL----PLSLE 218 (454)
T ss_dssp CEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSSCC--------CCTTCTTCCEEECCSSCCSS-CCCC----CTTCC
T ss_pred CEEECCCCcCcc-cCCC---cccccEEECcCCcCCcCc--------cccCCCCCCEEECCCCcCCc-CCCC----cCccc
Confidence 999999999986 4443 359999999999987632 47899999999999999985 4432 23699
Q ss_pred EEEccCcceeccCCccCcCCccccccccccceeeeccCcccCCCcccceeeccCccccccCCccccCCCCCcEEeccCCc
Q 038612 302 IIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLIGTIPHVIGSLKNLQLLYLYGNSLEGNIPSSLGNLTLLTKLALDFNN 381 (678)
Q Consensus 302 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 381 (678)
.|++++|.+. .+| .+..+++|+.|++++|++.+ +|. .+++|++|++++|.+.+ +|.. .++|++|++++|.
T Consensus 219 ~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~ 288 (454)
T 1jl5_A 219 SIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENI 288 (454)
T ss_dssp EEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSC
T ss_pred EEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCc
Confidence 9999999998 667 48999999999999999985 443 24799999999999986 5543 4899999999999
Q ss_pred cCccCCCCCCCcCCCceEecCCCccccccCccccccc-ccceEEEcCCCcccccCCccccCcccCCeeecccCcccccCC
Q 038612 382 LQGNIPSSLGSCQNLMELIVSHNKLNGTLPQQILEIR-TLSFQLDLSNNLLSGYLPFRVGNLKNLARLDISMNHFFGEIP 460 (678)
Q Consensus 382 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~-~l~~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~ 460 (678)
+.+. |.. .++|+.|++++|++.+ ++ ..+ .+ +.|++++|.+++ +|.. +++|++|++++|+++ .+|
T Consensus 289 l~~l-~~~---~~~L~~L~l~~N~l~~-i~----~~~~~L-~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp 353 (454)
T 1jl5_A 289 FSGL-SEL---PPNLYYLNASSNEIRS-LC----DLPPSL-EELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVP 353 (454)
T ss_dssp CSEE-SCC---CTTCCEEECCSSCCSE-EC----CCCTTC-CEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCC
T ss_pred cCcc-cCc---CCcCCEEECcCCcCCc-cc----CCcCcC-CEEECCCCcccc-cccc---CCcCCEEECCCCccc-ccc
Confidence 9863 221 2689999999999984 33 232 45 899999999997 5543 589999999999998 466
Q ss_pred ccccCCCCCCEEECcCCcccc--ccCccccCC-------------CCCCEEECCCCcccc--cCCccCCCCCCCCEEeCC
Q 038612 461 ATLSACTSLEYLYMQGNSFGG--RIPLSLISL-------------KSLKVLDLSRNNLSG--KIPEYLENLPFLQYLDLS 523 (678)
Q Consensus 461 ~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l-------------~~L~~L~ls~n~l~~--~~p~~l~~l~~L~~L~l~ 523 (678)
. .+++|++|++++|++++ .+|..+..+ ++|+.|++++|++++ .+|. +++.|.+.
T Consensus 354 ~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~~ 424 (454)
T 1jl5_A 354 E---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPE------SVEDLRMN 424 (454)
T ss_dssp C---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC--------------------------------------------
T ss_pred c---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchh------hHhheeCc
Confidence 5 47899999999999998 778888777 889999999999997 5564 45667788
Q ss_pred cCcceeeCC
Q 038612 524 YNHFEGQVP 532 (678)
Q Consensus 524 ~n~l~~~~p 532 (678)
+|.+.+.+|
T Consensus 425 ~~~~~~~~~ 433 (454)
T 1jl5_A 425 SERVVDPYE 433 (454)
T ss_dssp ---------
T ss_pred CcccCCccc
Confidence 888887665
No 30
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.7e-37 Score=333.82 Aligned_cols=347 Identities=21% Similarity=0.196 Sum_probs=238.6
Q ss_pred EEECCCCCCCccCChhhhcCCCCCCEEEcccCcCCCCCCccCcCCCCCcEEeccCCcceeccCCCCCCCCCCCeEEcccC
Q 038612 174 MIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLIELNLGQNHFTGKVSIDFNGLSDLAWLSFEAN 253 (678)
Q Consensus 174 ~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 253 (678)
.++.+++.++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++|
T Consensus 15 ~v~c~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 15 AVLCHRKRFV-AVPEGIP---TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp EEECCSCCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcC-cCCCCCC---CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 4555555554 4454432 46666777777666666666777777777777777776666666666666666666666
Q ss_pred cccccCCCCcccccccCCCCCCcEEEcccCCCCcccChhHhhccccCcEEEccCcceeccCCccCcCCccccccccccce
Q 038612 254 NLGAEASNDLDFVFSLTNCSKLEWLELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQ 333 (678)
Q Consensus 254 ~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 333 (678)
.+...... .+..+++|++|+|++|.+.+ ..+..+..+++|+.|++++|.
T Consensus 91 ~l~~~~~~------~~~~l~~L~~L~Ls~n~i~~-------------------------~~~~~~~~l~~L~~L~l~~n~ 139 (477)
T 2id5_A 91 RLKLIPLG------VFTGLSNLTKLDISENKIVI-------------------------LLDYMFQDLYNLKSLEVGDND 139 (477)
T ss_dssp CCCSCCTT------SSTTCTTCCEEECTTSCCCE-------------------------ECTTTTTTCTTCCEEEECCTT
T ss_pred cCCccCcc------cccCCCCCCEEECCCCcccc-------------------------CChhHccccccCCEEECCCCc
Confidence 55443221 24455555555555555544 444445555555555555555
Q ss_pred eeeccCcccCCCcccceeeccCccccccCCccccCCCCCcEEeccCCccCccCCCCCCCcCCCceEecCCCccccccCcc
Q 038612 334 LIGTIPHVIGSLKNLQLLYLYGNSLEGNIPSSLGNLTLLTKLALDFNNLQGNIPSSLGSCQNLMELIVSHNKLNGTLPQQ 413 (678)
Q Consensus 334 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~ 413 (678)
+.+..+..|..+++|++|++++|.+++..+..+.++++|+.|++++|.+.+..+..|..+++|+.|++++|...+.+|..
T Consensus 140 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 219 (477)
T 2id5_A 140 LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPN 219 (477)
T ss_dssp CCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTT
T ss_pred cceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcc
Confidence 55555556666666666666666666544455666666666666666666666666666677777777776666566665
Q ss_pred cccccccceEEEcCCCcccccCCccccCcccCCeeecccCcccccCCccccCCCCCCEEECcCCccccccCccccCCCCC
Q 038612 414 ILEIRTLSFQLDLSNNLLSGYLPFRVGNLKNLARLDISMNHFFGEIPATLSACTSLEYLYMQGNSFGGRIPLSLISLKSL 493 (678)
Q Consensus 414 ~~~~~~l~~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 493 (678)
......+ +.|++++|.+++..+..+..+++|++|+|++|.+++..+..|..+++|++|+|++|++.+..|..|..+++|
T Consensus 220 ~~~~~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 298 (477)
T 2id5_A 220 CLYGLNL-TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYL 298 (477)
T ss_dssp TTTTCCC-SEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTC
T ss_pred cccCccc-cEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccC
Confidence 5555555 677777777775555667888899999999999988888888899999999999999998888899999999
Q ss_pred CEEECCCCcccccCCccCCCCCCCCEEeCCcCcceeeCCCCCccCCCCceeccCCCCCcccCC
Q 038612 494 KVLDLSRNNLSGKIPEYLENLPFLQYLDLSYNHFEGQVPAKGVFHNKTSISLVGNENLCGGLD 556 (678)
Q Consensus 494 ~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~n~~lc~~~~ 556 (678)
+.|++++|++++..+..|..+++|+.|++++|++.+.++..+.+.......+.++...|..+.
T Consensus 299 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p~ 361 (477)
T 2id5_A 299 RVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPE 361 (477)
T ss_dssp CEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEESG
T ss_pred CEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCch
Confidence 999999999998777788899999999999999988776544444445556667777786543
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.3e-36 Score=326.96 Aligned_cols=345 Identities=26% Similarity=0.365 Sum_probs=212.6
Q ss_pred CCCCCEEECCCCCCccccChhhcCCccCcEEeccCCCCccCCCccCCCCCCCCEEEcccccccccCcccccCCCCCcEEE
Q 038612 97 WSKLEKLSIAVNHLRGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIF 176 (678)
Q Consensus 97 l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 176 (678)
+++++.|+++++.+.. +| .+..+++|++|++++|.+++..+ +.++++|++|++++|.+++..+ +.++++|++|+
T Consensus 45 l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 118 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 118 (466)
T ss_dssp HHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred hccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEE
Confidence 4566777777776653 33 36677777777777777764433 7777777777777777765443 77777777777
Q ss_pred CCCCCCCccCChhhhcCCCCCCEEEcccCcCCCCCCccCcCCCCCcEEeccCCcceeccCCCCCCCCCCCeEEcccCccc
Q 038612 177 LPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLIELNLGQNHFTGKVSIDFNGLSDLAWLSFEANNLG 256 (678)
Q Consensus 177 l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 256 (678)
+++|.+++. +. +. .+++|++|++++|.+++ ++ .+.++++|+.|+++ |.+.+..+ +..+++|+.|++++|.+.
T Consensus 119 L~~n~l~~~-~~-~~-~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~~~--~~~l~~L~~L~l~~n~l~ 190 (466)
T 1o6v_A 119 LFNNQITDI-DP-LK-NLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNKVS 190 (466)
T ss_dssp CCSSCCCCC-GG-GT-TCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred CCCCCCCCC-hH-Hc-CCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCchh--hccCCCCCEEECcCCcCC
Confidence 777777643 32 33 67777777777777764 22 46777777777775 33333222 555666666666665544
Q ss_pred ccCCCCcccccccCCCCCCcEEEcccCCCCcccChhHhhccccCcEEEccCcceeccCCccCcCCccccccccccceeee
Q 038612 257 AEASNDLDFVFSLTNCSKLEWLELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLIG 336 (678)
Q Consensus 257 ~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 336 (678)
.. ..+..+++|++|++++|.+.+..| +..++. |+.|++++|.+. +
T Consensus 191 ~~--------~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~-L~~L~l~~n~l~------------------------~ 235 (466)
T 1o6v_A 191 DI--------SVLAKLTNLESLIATNNQISDITP--LGILTN-LDELSLNGNQLK------------------------D 235 (466)
T ss_dssp CC--------GGGGGCTTCSEEECCSSCCCCCGG--GGGCTT-CCEEECCSSCCC------------------------C
T ss_pred CC--------hhhccCCCCCEEEecCCccccccc--ccccCC-CCEEECCCCCcc------------------------c
Confidence 32 124455555556655555554333 223322 555555555444 2
Q ss_pred ccCcccCCCcccceeeccCccccccCCccccCCCCCcEEeccCCccCccCCCCCCCcCCCceEecCCCccccccCccccc
Q 038612 337 TIPHVIGSLKNLQLLYLYGNSLEGNIPSSLGNLTLLTKLALDFNNLQGNIPSSLGSCQNLMELIVSHNKLNGTLPQQILE 416 (678)
Q Consensus 337 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 416 (678)
. ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|++.+..+ +..
T Consensus 236 ~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~ 307 (466)
T 1o6v_A 236 I--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISN 307 (466)
T ss_dssp C--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGG
T ss_pred c--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcC
Confidence 2 234455566666666666554332 5556666666666666654332 5556666666666666653322 445
Q ss_pred ccccceEEEcCCCcccccCCccccCcccCCeeecccCcccccCCccccCCCCCCEEECcCCccccccCccccCCCCCCEE
Q 038612 417 IRTLSFQLDLSNNLLSGYLPFRVGNLKNLARLDISMNHFFGEIPATLSACTSLEYLYMQGNSFGGRIPLSLISLKSLKVL 496 (678)
Q Consensus 417 ~~~l~~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 496 (678)
++.+ +.|++++|.+++..| +..+++|++|++++|++++. ..+..+++|++|++++|++++..| +..+++|+.|
T Consensus 308 l~~L-~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 380 (466)
T 1o6v_A 308 LKNL-TYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQL 380 (466)
T ss_dssp CTTC-SEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEE
T ss_pred CCCC-CEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEE
Confidence 5555 566666666665544 56677788888888877654 457777888888888888877665 6777888888
Q ss_pred ECCCCcccc
Q 038612 497 DLSRNNLSG 505 (678)
Q Consensus 497 ~ls~n~l~~ 505 (678)
++++|.+++
T Consensus 381 ~l~~n~~~~ 389 (466)
T 1o6v_A 381 GLNDQAWTN 389 (466)
T ss_dssp ECCCEEEEC
T ss_pred eccCCcccC
Confidence 888888775
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=8.7e-37 Score=325.35 Aligned_cols=357 Identities=21% Similarity=0.235 Sum_probs=259.8
Q ss_pred cCCCCCCCCEEECCCCCCccccChhhcCCccCcEEeccCCCCccCCCccCCCCCCCCEEEcccccccccCcccccCCCCC
Q 038612 93 GYSSWSKLEKLSIAVNHLRGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSL 172 (678)
Q Consensus 93 ~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 172 (678)
.+..+++|++|++++|.+++. | .+..+++|++|++++|.+++. | ++.+++|++|++++|.+++. + ++++++|
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L 108 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKL 108 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTC
T ss_pred ChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcC
Confidence 355677888888888888764 4 678888888888888888753 3 77888888888888888754 3 7788888
Q ss_pred cEEECCCCCCCccCChhhhcCCCCCCEEEcccCcCCCCCCccCcCCCCCcEEeccCCcceeccCCCCCCCCCCCeEEccc
Q 038612 173 EMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLIELNLGQNHFTGKVSIDFNGLSDLAWLSFEA 252 (678)
Q Consensus 173 ~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 252 (678)
++|++++|.+++ +| +. .+++|++|++++|.+++. .++++++|++|++++|+..+.+ .+..+++|+.|++++
T Consensus 109 ~~L~L~~N~l~~-l~--~~-~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~ 179 (457)
T 3bz5_A 109 TYLNCDTNKLTK-LD--VS-QNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSF 179 (457)
T ss_dssp CEEECCSSCCSC-CC--CT-TCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCS
T ss_pred CEEECCCCcCCe-ec--CC-CCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCC
Confidence 888888888875 44 33 778888888888888763 3777888888888888655444 466777888888888
Q ss_pred CcccccCCCCcccccccCCCCCCcEEEcccCCCCcccChhHhhccccCcEEEccCcceeccCCccCcCCccccccccccc
Q 038612 253 NNLGAEASNDLDFVFSLTNCSKLEWLELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLN 332 (678)
Q Consensus 253 n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 332 (678)
|.+... .+..+++|+.|++++|.+++. + +..++. |+.|++++|++++ +| +..+++|+.|++++|
T Consensus 180 n~l~~l---------~l~~l~~L~~L~l~~N~l~~~-~--l~~l~~-L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 180 NKITEL---------DVSQNKLLNRLNCDTNNITKL-D--LNQNIQ-LTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVN 243 (457)
T ss_dssp SCCCCC---------CCTTCTTCCEEECCSSCCSCC-C--CTTCTT-CSEEECCSSCCSC-CC--CTTCTTCSEEECCSS
T ss_pred Ccccee---------ccccCCCCCEEECcCCcCCee-c--cccCCC-CCEEECcCCcccc-cC--ccccCCCCEEEeeCC
Confidence 777653 156667777777777777654 2 445544 7777777777775 44 667777777777777
Q ss_pred eeeeccCcccCCCcccceeeccCccccccCCccccCCCCCcEEeccCCccCccCCCCCCCcCCCceEecCCCccccccCc
Q 038612 333 QLIGTIPHVIGSLKNLQLLYLYGNSLEGNIPSSLGNLTLLTKLALDFNNLQGNIPSSLGSCQNLMELIVSHNKLNGTLPQ 412 (678)
Q Consensus 333 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~ 412 (678)
++.+.. ++.+++|+.|++++| +|+.|++++|.+.+.+| +..+++|+.|++++|...+.+|.
T Consensus 244 ~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~ 304 (457)
T 3bz5_A 244 PLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC 304 (457)
T ss_dssp CCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC
T ss_pred cCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc
Confidence 776542 345666777766554 45667777887776666 46778888888888887777664
Q ss_pred ccccccccceEEEcCCCcccccCCccccCcccCCeeecccCcccccCCccccCCCCCCEEECcCCccccccCccccCCCC
Q 038612 413 QILEIRTLSFQLDLSNNLLSGYLPFRVGNLKNLARLDISMNHFFGEIPATLSACTSLEYLYMQGNSFGGRIPLSLISLKS 492 (678)
Q Consensus 413 ~~~~~~~l~~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 492 (678)
.. ..+ +.+++ ..+++|++|++++|++++. + ++.+++|+.|++++|++++ ++.
T Consensus 305 ~~---~~L-~~L~l-------------~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~ 356 (457)
T 3bz5_A 305 QA---AGI-TELDL-------------SQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSS 356 (457)
T ss_dssp TT---CCC-SCCCC-------------TTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTT
T ss_pred CC---Ccc-eEech-------------hhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccc
Confidence 32 222 33333 3447899999999999874 3 8889999999999999875 256
Q ss_pred CCEEECCCCcccccCCccCCCCCCCCEEeCCcCcceeeCCCC
Q 038612 493 LKVLDLSRNNLSGKIPEYLENLPFLQYLDLSYNHFEGQVPAK 534 (678)
Q Consensus 493 L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~ 534 (678)
|..|++++|.++|. ..+..|..+++++|+++|.+|..
T Consensus 357 L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 357 VGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp GGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred cccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence 67778899998876 24556788899999999999864
No 33
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.2e-36 Score=323.88 Aligned_cols=347 Identities=29% Similarity=0.425 Sum_probs=276.9
Q ss_pred CCccCcEEeccCCCCccCCCccCCCCCCCCEEEcccccccccCcccccCCCCCcEEECCCCCCCccCChhhhcCCCCCCE
Q 038612 120 NLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKS 199 (678)
Q Consensus 120 ~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~ 199 (678)
.+++|+.|+++++.+. .+| .+..+++|++|++++|.+++..+ +.++++|++|++++|.+.+..+ +. .+++|++
T Consensus 44 ~l~~l~~L~l~~~~i~-~l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~-~l~~L~~ 116 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LA-NLTNLTG 116 (466)
T ss_dssp HHHTCCEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GT-TCTTCCE
T ss_pred HhccccEEecCCCCCc-cCc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hc-CCCCCCE
Confidence 4678899999998887 455 37788999999999999885544 8889999999999998885544 44 8899999
Q ss_pred EEcccCcCCCCCCccCcCCCCCcEEeccCCcceeccCCCCCCCCCCCeEEcccCcccccCCCCcccccccCCCCCCcEEE
Q 038612 200 LIVAQNNLTGPIPHSLSNASNLIELNLGQNHFTGKVSIDFNGLSDLAWLSFEANNLGAEASNDLDFVFSLTNCSKLEWLE 279 (678)
Q Consensus 200 L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~ 279 (678)
|++++|.+++.. . +.++++|++|++++|.+.+.. .+..+++|+.|++. |.+... ..+..+++|++|+
T Consensus 117 L~L~~n~l~~~~-~-~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~-~~~~~~--------~~~~~l~~L~~L~ 183 (466)
T 1o6v_A 117 LTLFNNQITDID-P-LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFG-NQVTDL--------KPLANLTTLERLD 183 (466)
T ss_dssp EECCSSCCCCCG-G-GTTCTTCSEEEEEEEEECCCG--GGTTCTTCSEEEEE-ESCCCC--------GGGTTCTTCCEEE
T ss_pred EECCCCCCCCCh-H-HcCCCCCCEEECCCCccCCCh--hhccCCcccEeecC-CcccCc--------hhhccCCCCCEEE
Confidence 999999888543 2 888889999999888877532 36777777777774 222211 1355556666666
Q ss_pred cccCCCCcccChhHhhccccCcEEEccCcceeccCCccCcCCccccccccccceeeeccCcccCCCcccceeeccCcccc
Q 038612 280 LRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLIGTIPHVIGSLKNLQLLYLYGNSLE 359 (678)
Q Consensus 280 L~~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 359 (678)
+++|.+.+ . ..+..+++|+.|++++|.+.+..| ++.+++|++|++++|.+.
T Consensus 184 l~~n~l~~-------------------------~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~ 234 (466)
T 1o6v_A 184 ISSNKVSD-------------------------I--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLK 234 (466)
T ss_dssp CCSSCCCC-------------------------C--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred CcCCcCCC-------------------------C--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcc
Confidence 66655442 1 124556677777777777665544 667899999999999988
Q ss_pred ccCCccccCCCCCcEEeccCCccCccCCCCCCCcCCCceEecCCCccccccCcccccccccceEEEcCCCcccccCCccc
Q 038612 360 GNIPSSLGNLTLLTKLALDFNNLQGNIPSSLGSCQNLMELIVSHNKLNGTLPQQILEIRTLSFQLDLSNNLLSGYLPFRV 439 (678)
Q Consensus 360 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~L~l~~n~l~~~~~~~~ 439 (678)
+. ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..++.+ +.|++++|.+.+..+ +
T Consensus 235 ~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L-~~L~L~~n~l~~~~~--~ 305 (466)
T 1o6v_A 235 DI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTAL-TNLELNENQLEDISP--I 305 (466)
T ss_dssp CC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTC-SEEECCSSCCSCCGG--G
T ss_pred cc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCcc-CeEEcCCCcccCchh--h
Confidence 53 458899999999999999997654 8899999999999999985433 7778888 899999999997655 7
Q ss_pred cCcccCCeeecccCcccccCCccccCCCCCCEEECcCCccccccCccccCCCCCCEEECCCCcccccCCccCCCCCCCCE
Q 038612 440 GNLKNLARLDISMNHFFGEIPATLSACTSLEYLYMQGNSFGGRIPLSLISLKSLKVLDLSRNNLSGKIPEYLENLPFLQY 519 (678)
Q Consensus 440 ~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~ 519 (678)
..+++|++|++++|++++..| +..+++|++|++++|++++. ..+..+++|+.|++++|++++..| +..+++|+.
T Consensus 306 ~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 379 (466)
T 1o6v_A 306 SNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQ 379 (466)
T ss_dssp GGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCE
T ss_pred cCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCE
Confidence 889999999999999987665 78999999999999999875 468899999999999999998877 889999999
Q ss_pred EeCCcCcceee
Q 038612 520 LDLSYNHFEGQ 530 (678)
Q Consensus 520 L~l~~n~l~~~ 530 (678)
|++++|++.+.
T Consensus 380 L~l~~n~~~~~ 390 (466)
T 1o6v_A 380 LGLNDQAWTNA 390 (466)
T ss_dssp EECCCEEEECC
T ss_pred EeccCCcccCC
Confidence 99999999873
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=8.1e-36 Score=317.84 Aligned_cols=354 Identities=19% Similarity=0.206 Sum_probs=300.6
Q ss_pred CcEEEEEcCCCCCCCcccCCCCCCCCEEECCCCCCccccChhhcCCccCcEEeccCCCCccCCCccCCCCCCCCEEEccc
Q 038612 76 QRVTELYLRNQSLGADIGYSSWSKLEKLSIAVNHLRGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVEE 155 (678)
Q Consensus 76 ~~v~~l~l~~~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~ 155 (678)
.+++.++++++.+.+.+.+..+++|++|++++|.+++. | ++.+++|++|++++|.+++. + ++++++|++|++++
T Consensus 42 ~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~ 115 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDT 115 (457)
T ss_dssp TTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCS
T ss_pred CCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCC
Confidence 67899999999999888899999999999999999975 3 88999999999999999964 4 89999999999999
Q ss_pred ccccccCcccccCCCCCcEEECCCCCCCccCChhhhcCCCCCCEEEcccCcCCCCCCccCcCCCCCcEEeccCCcceecc
Q 038612 156 NNFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLIELNLGQNHFTGKV 235 (678)
Q Consensus 156 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 235 (678)
|.+++ +| ++.+++|++|++++|.+++. + +. .+++|++|++++|...+.+ .+..+++|++|++++|++++.
T Consensus 116 N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l- 185 (457)
T 3bz5_A 116 NKLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VS-HNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITEL- 185 (457)
T ss_dssp SCCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CT-TCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCC-
T ss_pred CcCCe-ec--CCCCCcCCEEECCCCcccee-c--cc-cCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcccee-
Confidence 99996 44 89999999999999999974 4 44 8999999999999665555 588999999999999999874
Q ss_pred CCCCCCCCCCCeEEcccCcccccCCCCcccccccCCCCCCcEEEcccCCCCcccChhHhhccccCcEEEccCcceeccCC
Q 038612 236 SIDFNGLSDLAWLSFEANNLGAEASNDLDFVFSLTNCSKLEWLELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIP 315 (678)
Q Consensus 236 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~ 315 (678)
+ +..+++|+.|++++|.+... .+..+++|++|++++|++++ +| +..++. |+.|++++|++++..
T Consensus 186 ~--l~~l~~L~~L~l~~N~l~~~---------~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~-L~~L~l~~N~l~~~~- 249 (457)
T 3bz5_A 186 D--VSQNKLLNRLNCDTNNITKL---------DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQ-LTYFDCSVNPLTELD- 249 (457)
T ss_dssp C--CTTCTTCCEEECCSSCCSCC---------CCTTCTTCSEEECCSSCCSC-CC--CTTCTT-CSEEECCSSCCSCCC-
T ss_pred c--cccCCCCCEEECcCCcCCee---------ccccCCCCCEEECcCCcccc-cC--ccccCC-CCEEEeeCCcCCCcC-
Confidence 3 88999999999999998874 36788999999999999997 56 666665 999999999999754
Q ss_pred ccCcCCccccccccccceeeeccCcccCCCcccceeeccCccccccCCccccCCCCCcEEeccCCccCccCCCCCCCcCC
Q 038612 316 LGIGNLVNLNLFSLHLNQLIGTIPHVIGSLKNLQLLYLYGNSLEGNIPSSLGNLTLLTKLALDFNNLQGNIPSSLGSCQN 395 (678)
Q Consensus 316 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 395 (678)
+..+++|+.|+++.| +|+.|++++|.+.+.+| ++.+++|+.|++++|...+.+|. ..++
T Consensus 250 --~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~ 308 (457)
T 3bz5_A 250 --VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAG 308 (457)
T ss_dssp --CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCC
T ss_pred --HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCc
Confidence 456778888887764 57889999998877776 57889999999999998887775 3567
Q ss_pred CceEecCCCccccccCcccccccccceEEEcCCCcccccCCccccCcccCCeeecccCcccccCCccccCCCCCCEEECc
Q 038612 396 LMELIVSHNKLNGTLPQQILEIRTLSFQLDLSNNLLSGYLPFRVGNLKNLARLDISMNHFFGEIPATLSACTSLEYLYMQ 475 (678)
Q Consensus 396 L~~L~l~~n~l~~~~p~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~ 475 (678)
|+.|++++| +.+ +.|++++|++++. + +..+++|+.|++++|++++ ++.|..|+++
T Consensus 309 L~~L~l~~~-------------~~L-~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~ 363 (457)
T 3bz5_A 309 ITELDLSQN-------------PKL-VYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPAL 363 (457)
T ss_dssp CSCCCCTTC-------------TTC-CEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGG
T ss_pred ceEechhhc-------------ccC-CEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------cccccccccc
Confidence 888887776 244 7899999999984 3 8889999999999999985 3567778899
Q ss_pred CCccccccCccccCCCCCCEEECCCCcccccCCccCC
Q 038612 476 GNSFGGRIPLSLISLKSLKVLDLSRNNLSGKIPEYLE 512 (678)
Q Consensus 476 ~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~ 512 (678)
+|.+.|. ..+..|+.+++++|+++|.+|..+.
T Consensus 364 ~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~ 395 (457)
T 3bz5_A 364 NNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLL 395 (457)
T ss_dssp GTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCB
T ss_pred CCcEEec-----ceeeecCccccccCcEEEEcChhHh
Confidence 9999876 2456788899999999999987654
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=8.4e-35 Score=314.29 Aligned_cols=319 Identities=20% Similarity=0.233 Sum_probs=184.2
Q ss_pred CEEECCCCCCccccChhhcCCccCcEEeccCCCCccCCCccCCCCCCCCEEEcccccccccCcccccCCCCCcEEECCCC
Q 038612 101 EKLSIAVNHLRGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFLPAN 180 (678)
Q Consensus 101 ~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 180 (678)
+.++.+++.++ .+|..+. +++++|++++|.+++..+..|.++++|++|+|++|.+++..|..|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 45666666665 3454442 46777777777777666667777777777777777777666777777777777777777
Q ss_pred CCCccCChhhhcCCCCCCEEEcccCcCCCCCCccCcCCCCCcEEeccCCcceeccCCCCCCCCCCCeEEcccCcccccCC
Q 038612 181 RLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLIELNLGQNHFTGKVSIDFNGLSDLAWLSFEANNLGAEAS 260 (678)
Q Consensus 181 ~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 260 (678)
.++ .+|...+..+++|++|++++|.+++..+..|.++++|++|++++|.+.+..+..|.+
T Consensus 91 ~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------- 150 (477)
T 2id5_A 91 RLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG------------------- 150 (477)
T ss_dssp CCC-SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTT-------------------
T ss_pred cCC-ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccC-------------------
Confidence 766 344433336666666666666666666666666666666666666666555544444
Q ss_pred CCcccccccCCCCCCcEEEcccCCCCcccChhHhhccccCcEEEccCcceeccCCccCcCCccccccccccceeeeccCc
Q 038612 261 NDLDFVFSLTNCSKLEWLELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLIGTIPH 340 (678)
Q Consensus 261 ~~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~ 340 (678)
+++|++|++++|.+.+..+..+..++. |+.|++++|.+.+..+..+..+++|+.|++++|...+.+|.
T Consensus 151 -----------l~~L~~L~l~~n~l~~~~~~~l~~l~~-L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 218 (477)
T 2id5_A 151 -----------LNSLEQLTLEKCNLTSIPTEALSHLHG-LIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTP 218 (477)
T ss_dssp -----------CTTCCEEEEESCCCSSCCHHHHTTCTT-CCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECT
T ss_pred -----------CCCCCEEECCCCcCcccChhHhcccCC-CcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCc
Confidence 444555555555554433444444443 66666666666555555566666666666666555555554
Q ss_pred ccCCCcccceeeccCccccccCCccccCCCCCcEEeccCCccCccCCCCCCCcCCCceEecCCCccccccCccccccccc
Q 038612 341 VIGSLKNLQLLYLYGNSLEGNIPSSLGNLTLLTKLALDFNNLQGNIPSSLGSCQNLMELIVSHNKLNGTLPQQILEIRTL 420 (678)
Q Consensus 341 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l 420 (678)
......+|++|++++|.+++..+..+..+++|++|++++|.+.+..+..|..+++|+.|++++|++.+..|..+..++.+
T Consensus 219 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 298 (477)
T 2id5_A 219 NCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYL 298 (477)
T ss_dssp TTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTC
T ss_pred ccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccC
Confidence 44444566666666666664333455666666666666666665555556666666666666665554444433333333
Q ss_pred ceEEEcCCCcccccCCccccCcccCCeeecccCcc
Q 038612 421 SFQLDLSNNLLSGYLPFRVGNLKNLARLDISMNHF 455 (678)
Q Consensus 421 ~~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~ 455 (678)
+.|++++|.+++..+..|..+++|++|+|++|.+
T Consensus 299 -~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 332 (477)
T 2id5_A 299 -RVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332 (477)
T ss_dssp -CEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCE
T ss_pred -CEEECCCCcCceeCHhHcCCCcccCEEEccCCCc
Confidence 3344444433333333333444444444444443
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.4e-34 Score=302.18 Aligned_cols=350 Identities=18% Similarity=0.174 Sum_probs=218.3
Q ss_pred CCCCCCCCCCCC-cccccccCCCCcEEEEEcCCCCCCCcccCCCCCCCCEEECCCCCCccccChhhcCCccCcEEeccCC
Q 038612 54 TSSWDTSVNLCQ-WTGVTCGRRHQRVTELYLRNQSLGADIGYSSWSKLEKLSIAVNHLRGQLPASIGNLSALQAFDVGEN 132 (678)
Q Consensus 54 ~~~w~~~~~~c~-w~gv~c~~~~~~v~~l~l~~~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ls~n 132 (678)
+++|....+||. |.+..|.....++ +-..........-..++++++|+++++.+....+..+..+++|++|++++|
T Consensus 3 ~~~~~~~~~C~~~~~~~~c~~~~~~i---~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n 79 (390)
T 3o6n_A 3 VKPRQPEYKCIDSNLQYDCVFYDVHI---DMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL 79 (390)
T ss_dssp ----CCEECBCC------EEEESCEE---CSSCCCCEESCSSGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTS
T ss_pred cCCCCCccceehhhhhhccceeeeee---ecccccccccccccccCCceEEEecCCchhhCChhHhcccccCcEEECCCC
Confidence 567877777775 5555453211111 111111111112234688999999999988666666889999999999999
Q ss_pred CCccCCCccCCCCCCCCEEEcccccccccCcccccCCCCCcEEECCCCCCCccCChhhhcCCCCCCEEEcccCcCCCCCC
Q 038612 133 TLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIP 212 (678)
Q Consensus 133 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~ 212 (678)
.+++..+..|..+++|++|++++|.+++..|..+.++++|++|++++|.++ .+|..++..+++|++|++++|.+++..+
T Consensus 80 ~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~ 158 (390)
T 3o6n_A 80 QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIED 158 (390)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred cccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccCh
Confidence 998777778999999999999999999888888999999999999999988 5666655578899999999999887777
Q ss_pred ccCcCCCCCcEEeccCCcceeccCCCCCCCCCCCeEEcccCcccccCCCCcccccccCCCCCCcEEEcccCCCCcccChh
Q 038612 213 HSLSNASNLIELNLGQNHFTGKVSIDFNGLSDLAWLSFEANNLGAEASNDLDFVFSLTNCSKLEWLELRKNQFGGNLPHF 292 (678)
Q Consensus 213 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~ 292 (678)
..+.++++|++|++++|++++. .+..+++|+.|++++|.+.... ..++
T Consensus 159 ~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~~-----------~~~~------------------ 206 (390)
T 3o6n_A 159 DTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTLA-----------IPIA------------------ 206 (390)
T ss_dssp TTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEEE-----------CCSS------------------
T ss_pred hhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccccC-----------CCCc------------------
Confidence 7888888899999888887653 2445556666666655544321 1123
Q ss_pred HhhccccCcEEEccCcceeccCCccCcCCccccccccccceeeeccCcccCCCcccceeeccCccccccCCccccCCCCC
Q 038612 293 IANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLIGTIPHVIGSLKNLQLLYLYGNSLEGNIPSSLGNLTLL 372 (678)
Q Consensus 293 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 372 (678)
|+.|++++|.+... |. ...++|+.|++++|.+.+. ..+..+++|++|++++|.+.+..|..+..+++|
T Consensus 207 -------L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 274 (390)
T 3o6n_A 207 -------VEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL 274 (390)
T ss_dssp -------CSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSC
T ss_pred -------ceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccC
Confidence 44444444444322 11 1123444455555544432 344555666666666666665555556666666
Q ss_pred cEEeccCCccCccCCCCCCCcCCCceEecCCCccccccCcccccccccceEEEcCCCcccccCCccccCcccCCeeeccc
Q 038612 373 TKLALDFNNLQGNIPSSLGSCQNLMELIVSHNKLNGTLPQQILEIRTLSFQLDLSNNLLSGYLPFRVGNLKNLARLDISM 452 (678)
Q Consensus 373 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 452 (678)
++|++++|++.+ +|..+..+++|++|++++|++. .+|. .+..+++|++|++++
T Consensus 275 ~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~-------------------------~~~~l~~L~~L~L~~ 327 (390)
T 3o6n_A 275 ERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVER-------------------------NQPQFDRLENLYLDH 327 (390)
T ss_dssp CEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGG-------------------------GHHHHTTCSEEECCS
T ss_pred CEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCc-------------------------cccccCcCCEEECCC
Confidence 666666666553 3334445555666666555554 3333 334455666666666
Q ss_pred CcccccCCccccCCCCCCEEECcCCcccc
Q 038612 453 NHFFGEIPATLSACTSLEYLYMQGNSFGG 481 (678)
Q Consensus 453 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 481 (678)
|++++. + +..+++|++|++++|++..
T Consensus 328 N~i~~~-~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 328 NSIVTL-K--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp SCCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred Ccccee-C--chhhccCCEEEcCCCCccc
Confidence 666532 2 4556667777777776654
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=3e-34 Score=317.89 Aligned_cols=350 Identities=18% Similarity=0.166 Sum_probs=247.2
Q ss_pred CCCCCCCCCCCCC----cccccccCCCCcEEEEEcCCCCCCCcccCCCCCCCCEEECCCCCCccccChhhcCCccCcEEe
Q 038612 53 VTSSWDTSVNLCQ----WTGVTCGRRHQRVTELYLRNQSLGADIGYSSWSKLEKLSIAVNHLRGQLPASIGNLSALQAFD 128 (678)
Q Consensus 53 ~~~~w~~~~~~c~----w~gv~c~~~~~~v~~l~l~~~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ 128 (678)
.+++|..+.+||. |.++.|+ .. ++...........-..+++++.|++++|.+....+..+..+++|++|+
T Consensus 8 ~l~~~~~~~~C~~~~~~~~c~~~~---~~---i~~~~~~~~~~~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~ 81 (597)
T 3oja_B 8 NVKPRQPEYKCIDSNLQYDCVFYD---VH---IDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLN 81 (597)
T ss_dssp ---CCCSEECCCCC--CCSEEECS---CE---ECSSCCCCEESCSSGGGCCCSEEEESSCEESEECTHHHHHCCCCSEEE
T ss_pred cccCCCCCCcCcccCcCceeEecC---ce---ecccccccccCcccccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEE
Confidence 4678887777774 5554443 11 111111111111223467899999999999877777789999999999
Q ss_pred ccCCCCccCCCccCCCCCCCCEEEcccccccccCcccccCCCCCcEEECCCCCCCccCChhhhcCCCCCCEEEcccCcCC
Q 038612 129 VGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLT 208 (678)
Q Consensus 129 ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~ 208 (678)
+++|.+++..|..|+.+++|++|+|++|.+++..|..|+++++|++|++++|.++ .+|..++..+++|++|++++|.++
T Consensus 82 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~ 160 (597)
T 3oja_B 82 LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE 160 (597)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCC
Confidence 9999999888889999999999999999999888888999999999999999998 566665448999999999999999
Q ss_pred CCCCccCcCCCCCcEEeccCCcceeccCCCCCCCCCCCeEEcccCcccccCCCCcccccccCCCCCCcEEEcccCCCCcc
Q 038612 209 GPIPHSLSNASNLIELNLGQNHFTGKVSIDFNGLSDLAWLSFEANNLGAEASNDLDFVFSLTNCSKLEWLELRKNQFGGN 288 (678)
Q Consensus 209 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~ 288 (678)
+..|..|.++++|++|++++|.+++. .+..+++|+.|++++|.+... ...++|+.|++++|.+...
T Consensus 161 ~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~l-----------~~~~~L~~L~ls~n~l~~~ 226 (597)
T 3oja_B 161 RIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----------AIPIAVEELDASHNSINVV 226 (597)
T ss_dssp BCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSEE-----------ECCTTCSEEECCSSCCCEE
T ss_pred CCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCccccc-----------cCCchhheeeccCCccccc
Confidence 88888899999999999999988754 245567777777777766542 2224566666666655422
Q ss_pred cChhHhhccccCcEEEccCcceeccCCccCcCCccccccccccceeeeccCcccCCCcccceeeccCccccccCCccccC
Q 038612 289 LPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLIGTIPHVIGSLKNLQLLYLYGNSLEGNIPSSLGN 368 (678)
Q Consensus 289 ~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 368 (678)
.+. . .++|+.|++++|.+.+. ..+..+++|++|++++|.+.+..|..++.
T Consensus 227 ~~~-------------------------~---~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 276 (597)
T 3oja_B 227 RGP-------------------------V---NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVK 276 (597)
T ss_dssp ECS-------------------------C---CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred ccc-------------------------c---CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHhcC
Confidence 111 1 13455555555555432 44566667777777777776666666777
Q ss_pred CCCCcEEeccCCccCccCCCCCCCcCCCceEecCCCccccccCcccccccccceEEEcCCCcccccCCccccCcccCCee
Q 038612 369 LTLLTKLALDFNNLQGNIPSSLGSCQNLMELIVSHNKLNGTLPQQILEIRTLSFQLDLSNNLLSGYLPFRVGNLKNLARL 448 (678)
Q Consensus 369 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~l~~L~~L 448 (678)
+++|++|++++|.+.+ +|..+..+++|+.|++++|.+. .+|..+..++.+ +.|++++|.+++.. +..+++|+.|
T Consensus 277 l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L-~~L~L~~N~l~~~~---~~~~~~L~~L 350 (597)
T 3oja_B 277 MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRL-ENLYLDHNSIVTLK---LSTHHTLKNL 350 (597)
T ss_dssp CSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTC-SEEECCSSCCCCCC---CCTTCCCSEE
T ss_pred ccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCC-CEEECCCCCCCCcC---hhhcCCCCEE
Confidence 7777777777777764 3555566777777777777776 566666666666 67777777776542 5567888999
Q ss_pred ecccCcccccC
Q 038612 449 DISMNHFFGEI 459 (678)
Q Consensus 449 ~Ls~n~~~~~~ 459 (678)
++++|++.+..
T Consensus 351 ~l~~N~~~~~~ 361 (597)
T 3oja_B 351 TLSHNDWDCNS 361 (597)
T ss_dssp ECCSSCEEHHH
T ss_pred EeeCCCCCChh
Confidence 99999887543
No 38
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=6.4e-34 Score=288.60 Aligned_cols=253 Identities=28% Similarity=0.488 Sum_probs=199.1
Q ss_pred CcEEEccCcceec--cCCccCcCCcccccccccc-ceeeeccCcccCCCcccceeeccCccccccCCccccCCCCCcEEe
Q 038612 300 MTIIDMGENKLSG--TIPLGIGNLVNLNLFSLHL-NQLIGTIPHVIGSLKNLQLLYLYGNSLEGNIPSSLGNLTLLTKLA 376 (678)
Q Consensus 300 L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 376 (678)
++.|++++|.+.+ .+|..+.++++|+.|++++ |.+.+.+|..++.+++|++|++++|.+.+.+|..+.++++|++|+
T Consensus 52 l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 131 (313)
T 1ogq_A 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131 (313)
T ss_dssp EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE
T ss_pred EEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEe
Confidence 6666666666666 5666666666666666663 666666666677777777777777777766776677777777777
Q ss_pred ccCCccCccCCCCCCCcCCCceEecCCCccccccCccccccc-ccceEEEcCCCcccccCCccccCcccCCeeecccCcc
Q 038612 377 LDFNNLQGNIPSSLGSCQNLMELIVSHNKLNGTLPQQILEIR-TLSFQLDLSNNLLSGYLPFRVGNLKNLARLDISMNHF 455 (678)
Q Consensus 377 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~-~l~~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~ 455 (678)
+++|.+.+.+|..+..+++|++|++++|++.+.+|..+..++ .+ +.|++++|.+++.+|..+..++ |++|++++|.+
T Consensus 132 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L-~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l 209 (313)
T 1ogq_A 132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLF-TSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209 (313)
T ss_dssp CCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTC-CEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred CCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcC-cEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence 777777766777777777777777777777777777777766 44 6777777777777777777776 88999999998
Q ss_pred cccCCccccCCCCCCEEECcCCccccccCccccCCCCCCEEECCCCcccccCCccCCCCCCCCEEeCCcCcceeeCCCCC
Q 038612 456 FGEIPATLSACTSLEYLYMQGNSFGGRIPLSLISLKSLKVLDLSRNNLSGKIPEYLENLPFLQYLDLSYNHFEGQVPAKG 535 (678)
Q Consensus 456 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~ 535 (678)
++..|..+..+++|++|++++|++++.+|. +..+++|++|++++|++++.+|..+..+++|++|++++|+++|.+|...
T Consensus 210 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~ 288 (313)
T 1ogq_A 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG 288 (313)
T ss_dssp EECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCST
T ss_pred cCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCc
Confidence 888888888999999999999998877665 7788999999999999999999999999999999999999999999887
Q ss_pred ccCCCCceeccCCCCCcccC
Q 038612 536 VFHNKTSISLVGNENLCGGL 555 (678)
Q Consensus 536 ~~~~l~~~~~~~n~~lc~~~ 555 (678)
.+++++.+++.+|+++||.+
T Consensus 289 ~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 289 NLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp TGGGSCGGGTCSSSEEESTT
T ss_pred cccccChHHhcCCCCccCCC
Confidence 78889999999999999863
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=4.6e-33 Score=292.32 Aligned_cols=335 Identities=19% Similarity=0.181 Sum_probs=237.2
Q ss_pred CCCCCcEEECCCCCCCccCChhhhcCCCCCCEEEcccCcCCCCCCccCcCCCCCcEEeccCCcceeccCCCCCCCCCCCe
Q 038612 168 NISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLIELNLGQNHFTGKVSIDFNGLSDLAW 247 (678)
Q Consensus 168 ~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 247 (678)
.+.++++|++++|.++ .+|..++..+++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..+..+++|++
T Consensus 43 ~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 121 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121 (390)
T ss_dssp GGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence 3578888888888877 566665557888888888888888777778888888888888888888777776777777777
Q ss_pred EEcccCcccccCCCCcccccccCCCCCCcEEEcccCCCCcccChhHhhccccCcEEEccCcceeccCCccCcCCcccccc
Q 038612 248 LSFEANNLGAEASNDLDFVFSLTNCSKLEWLELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLF 327 (678)
Q Consensus 248 L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 327 (678)
|++++|.+...... .+..+++|++|++++|.+. +..+..+..+++|+.|
T Consensus 122 L~L~~n~l~~l~~~------~~~~l~~L~~L~L~~n~l~-------------------------~~~~~~~~~l~~L~~L 170 (390)
T 3o6n_A 122 LVLERNDLSSLPRG------IFHNTPKLTTLSMSNNNLE-------------------------RIEDDTFQATTSLQNL 170 (390)
T ss_dssp EECCSSCCCCCCTT------TTTTCTTCCEEECCSSCCC-------------------------BCCTTTTSSCTTCCEE
T ss_pred EECCCCccCcCCHH------HhcCCCCCcEEECCCCccC-------------------------ccChhhccCCCCCCEE
Confidence 77777666543221 2344555555555555544 4444445555555555
Q ss_pred ccccceeeeccCcccCCCcccceeeccCccccccCCccccCCCCCcEEeccCCccCccCCCCCCCcCCCceEecCCCccc
Q 038612 328 SLHLNQLIGTIPHVIGSLKNLQLLYLYGNSLEGNIPSSLGNLTLLTKLALDFNNLQGNIPSSLGSCQNLMELIVSHNKLN 407 (678)
Q Consensus 328 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 407 (678)
++++|++.+. .+..+++|++|++++|.+.+. ...++|++|++++|.+... |.. ..++|+.|++++|.+.
T Consensus 171 ~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~ 239 (390)
T 3o6n_A 171 QLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLT 239 (390)
T ss_dssp ECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCC
T ss_pred ECCCCcCCcc---ccccccccceeeccccccccc-----CCCCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCc
Confidence 5555555433 234566777777777766532 2345677777777777654 222 2467888888888876
Q ss_pred cccCcccccccccceEEEcCCCcccccCCccccCcccCCeeecccCcccccCCccccCCCCCCEEECcCCccccccCccc
Q 038612 408 GTLPQQILEIRTLSFQLDLSNNLLSGYLPFRVGNLKNLARLDISMNHFFGEIPATLSACTSLEYLYMQGNSFGGRIPLSL 487 (678)
Q Consensus 408 ~~~p~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 487 (678)
+. ..+..++.+ +.|++++|.+.+..|..+..+++|++|+|++|++++ +|..+..+++|++|++++|++. .+|..+
T Consensus 240 ~~--~~l~~l~~L-~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~ 314 (390)
T 3o6n_A 240 DT--AWLLNYPGL-VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQ 314 (390)
T ss_dssp CC--GGGGGCTTC-SEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGH
T ss_pred cc--HHHcCCCCc-cEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccc
Confidence 42 456667777 788888888888888888889999999999999884 5666678899999999999987 456667
Q ss_pred cCCCCCCEEECCCCcccccCCccCCCCCCCCEEeCCcCcceeeCCCCCccCCCCceeccCCCCCccc
Q 038612 488 ISLKSLKVLDLSRNNLSGKIPEYLENLPFLQYLDLSYNHFEGQVPAKGVFHNKTSISLVGNENLCGG 554 (678)
Q Consensus 488 ~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~n~~lc~~ 554 (678)
..+++|+.|++++|+++.. + +..+++|+.|++++|++.+.... ..+..+....+.+++..|..
T Consensus 315 ~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~~ 377 (390)
T 3o6n_A 315 PQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKI 377 (390)
T ss_dssp HHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCSCCCT
T ss_pred cccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHH-HHHHHHHhhcccccCceecc
Confidence 8889999999999999854 3 67788999999999999875332 22344444455666666764
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=4.6e-33 Score=308.35 Aligned_cols=336 Identities=18% Similarity=0.175 Sum_probs=244.4
Q ss_pred CCCCcEEECCCCCCCccCChhhhcCCCCCCEEEcccCcCCCCCCccCcCCCCCcEEeccCCcceeccCCCCCCCCCCCeE
Q 038612 169 ISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLIELNLGQNHFTGKVSIDFNGLSDLAWL 248 (678)
Q Consensus 169 l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 248 (678)
+.+++.|++++|.+. .+|..++..+++|++|++++|.+++..|..|..+++|++|++++|.+++..+..|..+++|++|
T Consensus 50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 578889999998887 5666655588999999999999988777788899999999999998888777777777777777
Q ss_pred EcccCcccccCCCCcccccccCCCCCCcEEEcccCCCCcccChhHhhccccCcEEEccCcceeccCCccCcCCccccccc
Q 038612 249 SFEANNLGAEASNDLDFVFSLTNCSKLEWLELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFS 328 (678)
Q Consensus 249 ~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 328 (678)
++++|.+...... .+..+++|++|++++|.+.+ ..|..+..+++|+.|+
T Consensus 129 ~L~~n~l~~l~~~------~~~~l~~L~~L~Ls~N~l~~-------------------------~~~~~~~~l~~L~~L~ 177 (597)
T 3oja_B 129 VLERNDLSSLPRG------IFHNTPKLTTLSMSNNNLER-------------------------IEDDTFQATTSLQNLQ 177 (597)
T ss_dssp ECCSSCCCCCCTT------TTTTCTTCCEEECCSSCCCB-------------------------CCTTTTTTCTTCCEEE
T ss_pred EeeCCCCCCCCHH------HhccCCCCCEEEeeCCcCCC-------------------------CChhhhhcCCcCcEEE
Confidence 7777766643321 23455555555555555544 4444455555555555
Q ss_pred cccceeeeccCcccCCCcccceeeccCccccccCCccccCCCCCcEEeccCCccCccCCCCCCCcCCCceEecCCCcccc
Q 038612 329 LHLNQLIGTIPHVIGSLKNLQLLYLYGNSLEGNIPSSLGNLTLLTKLALDFNNLQGNIPSSLGSCQNLMELIVSHNKLNG 408 (678)
Q Consensus 329 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 408 (678)
+++|.+.+. .++.+++|+.|++++|.+.+ +...++|+.|++++|.+....+.. .++|+.|++++|.+.+
T Consensus 178 L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~ 246 (597)
T 3oja_B 178 LSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD 246 (597)
T ss_dssp CTTSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC
T ss_pred CcCCCCCCc---ChhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC
Confidence 555555433 13445667777777776653 233456777777777776443322 2578888888888774
Q ss_pred ccCcccccccccceEEEcCCCcccccCCccccCcccCCeeecccCcccccCCccccCCCCCCEEECcCCccccccCcccc
Q 038612 409 TLPQQILEIRTLSFQLDLSNNLLSGYLPFRVGNLKNLARLDISMNHFFGEIPATLSACTSLEYLYMQGNSFGGRIPLSLI 488 (678)
Q Consensus 409 ~~p~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 488 (678)
+..+..++.+ +.|++++|.+++..|..+..+++|++|+|++|.+++ +|..+..+++|+.|+|++|.+. .+|..+.
T Consensus 247 --~~~l~~l~~L-~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~ 321 (597)
T 3oja_B 247 --TAWLLNYPGL-VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQP 321 (597)
T ss_dssp --CGGGGGCTTC-SEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHH
T ss_pred --ChhhccCCCC-CEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccc
Confidence 3566777777 788888888888888888899999999999999985 5666778999999999999998 5677788
Q ss_pred CCCCCCEEECCCCcccccCCccCCCCCCCCEEeCCcCcceeeCCCCCccCCCCceeccCCCCCcccCC
Q 038612 489 SLKSLKVLDLSRNNLSGKIPEYLENLPFLQYLDLSYNHFEGQVPAKGVFHNKTSISLVGNENLCGGLD 556 (678)
Q Consensus 489 ~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~n~~lc~~~~ 556 (678)
.+++|+.|++++|.+++. | +..+++|+.|++++|++.|..+. ..+..+....+.+++..|+...
T Consensus 322 ~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~~~ 385 (597)
T 3oja_B 322 QFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKIDY 385 (597)
T ss_dssp HHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCTTC
T ss_pred cCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhccccccccCCcch
Confidence 899999999999999865 3 67788999999999999876432 2244444555667777887643
No 41
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=3e-32 Score=281.58 Aligned_cols=304 Identities=23% Similarity=0.383 Sum_probs=148.9
Q ss_pred CCCCCEEECCCCCCccccChhhcCCccCcEEeccCCCCccCCCccCCCCCCCCEEEcccccccccCcccccCCCCCcEEE
Q 038612 97 WSKLEKLSIAVNHLRGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIF 176 (678)
Q Consensus 97 l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 176 (678)
+++|++|+++++.+.. ++ .+..+++|++|++++|.+++. +. +.++++|++|++++|.++. + ..+.++++|++|+
T Consensus 43 l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~ 116 (347)
T 4fmz_A 43 LESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELY 116 (347)
T ss_dssp HTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEE
T ss_pred cccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEE
Confidence 3444444444444432 12 244444555555555444422 22 4444555555555554442 1 2344455555555
Q ss_pred CCCCCCCccCChhhhcCCCCCCEEEcccCcCCCCCCccCcCCCCCcEEeccCCcceeccCCCCCCCCCCCeEEcccCccc
Q 038612 177 LPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLIELNLGQNHFTGKVSIDFNGLSDLAWLSFEANNLG 256 (678)
Q Consensus 177 l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 256 (678)
+++|.+.+. +. +. .+++|++|++++|.....++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.
T Consensus 117 l~~n~i~~~-~~-~~-~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~ 190 (347)
T 4fmz_A 117 LNEDNISDI-SP-LA-NLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE 190 (347)
T ss_dssp CTTSCCCCC-GG-GT-TCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC
T ss_pred CcCCcccCc-hh-hc-cCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc
Confidence 555544422 22 22 44555555555543332222 24445555555555554443322 444455555555555443
Q ss_pred ccCCCCcccccccCCCCCCcEEEcccCCCCcccChhHhhccccCcEEEccCcceeccCCccCcCCccccccccccceeee
Q 038612 257 AEASNDLDFVFSLTNCSKLEWLELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLIG 336 (678)
Q Consensus 257 ~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 336 (678)
... .+..+++|+.+++++|.+.+..+ +..++. |+.|++++|.+++..+ +..+++|+.|++++|.+.+
T Consensus 191 ~~~--------~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~-L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~ 257 (347)
T 4fmz_A 191 DIS--------PLASLTSLHYFTAYVNQITDITP--VANMTR-LNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD 257 (347)
T ss_dssp CCG--------GGGGCTTCCEEECCSSCCCCCGG--GGGCTT-CCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred ccc--------cccCCCccceeecccCCCCCCch--hhcCCc-CCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC
Confidence 321 13444555555555555543322 333333 5555555555553332 5555666666666665554
Q ss_pred ccCcccCCCcccceeeccCccccccCCccccCCCCCcEEeccCCccCccCCCCCCCcCCCceEecCCCccccccCccccc
Q 038612 337 TIPHVIGSLKNLQLLYLYGNSLEGNIPSSLGNLTLLTKLALDFNNLQGNIPSSLGSCQNLMELIVSHNKLNGTLPQQILE 416 (678)
Q Consensus 337 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 416 (678)
. ..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++.+..| +..
T Consensus 258 ~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~ 331 (347)
T 4fmz_A 258 I--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LAS 331 (347)
T ss_dssp C--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGG
T ss_pred C--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhh
Confidence 2 3455566666666666666543 235556666666666666665555555666666666666666654333 445
Q ss_pred ccccceEEEcCCCccc
Q 038612 417 IRTLSFQLDLSNNLLS 432 (678)
Q Consensus 417 ~~~l~~~L~l~~n~l~ 432 (678)
++.+ +.|++++|.++
T Consensus 332 l~~L-~~L~l~~N~i~ 346 (347)
T 4fmz_A 332 LSKM-DSADFANQVIK 346 (347)
T ss_dssp CTTC-SEESSSCC---
T ss_pred hhcc-ceeehhhhccc
Confidence 5555 56666666553
No 42
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=5.3e-32 Score=279.71 Aligned_cols=307 Identities=24% Similarity=0.340 Sum_probs=198.7
Q ss_pred ccCCCCCcEEECCCCCCCccCChhhhcCCCCCCEEEcccCcCCCCCCccCcCCCCCcEEeccCCcceeccCCCCCCCCCC
Q 038612 166 IYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLIELNLGQNHFTGKVSIDFNGLSDL 245 (678)
Q Consensus 166 ~~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 245 (678)
+..+++|++|+++++.+.. +|. +. .+++|++|++++|.+++. +. +.++++|++|++++|.+++. ..+..+++|
T Consensus 40 ~~~l~~L~~L~l~~~~i~~-~~~-~~-~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L 112 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVAS-IQG-IE-YLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITDI--SALQNLTNL 112 (347)
T ss_dssp HHHHTTCSEEECCSSCCCC-CTT-GG-GCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred chhcccccEEEEeCCcccc-chh-hh-hcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccCc--hHHcCCCcC
Confidence 4567788888888887763 443 43 678888888888877743 33 77788888888888877643 246666666
Q ss_pred CeEEcccCcccccCCCCcccccccCCCCCCcEEEcccCCCCcccChhHhhccccCcEEEccCcceeccCCccCcCCcccc
Q 038612 246 AWLSFEANNLGAEASNDLDFVFSLTNCSKLEWLELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVNLN 325 (678)
Q Consensus 246 ~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 325 (678)
++|++++|.+.... .+..+++|++|++++|......+. +..+++|+
T Consensus 113 ~~L~l~~n~i~~~~--------~~~~l~~L~~L~l~~n~~~~~~~~--------------------------~~~l~~L~ 158 (347)
T 4fmz_A 113 RELYLNEDNISDIS--------PLANLTKMYSLNLGANHNLSDLSP--------------------------LSNMTGLN 158 (347)
T ss_dssp SEEECTTSCCCCCG--------GGTTCTTCCEEECTTCTTCCCCGG--------------------------GTTCTTCC
T ss_pred CEEECcCCcccCch--------hhccCCceeEEECCCCCCcccccc--------------------------hhhCCCCc
Confidence 66666666655421 245556666666666543322222 34444455
Q ss_pred ccccccceeeeccCcccCCCcccceeeccCccccccCCccccCCCCCcEEeccCCccCccCCCCCCCcCCCceEecCCCc
Q 038612 326 LFSLHLNQLIGTIPHVIGSLKNLQLLYLYGNSLEGNIPSSLGNLTLLTKLALDFNNLQGNIPSSLGSCQNLMELIVSHNK 405 (678)
Q Consensus 326 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 405 (678)
.|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|++|++++|+
T Consensus 159 ~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~ 232 (347)
T 4fmz_A 159 YLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNK 232 (347)
T ss_dssp EEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSC
T ss_pred EEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCc
Confidence 55555444443322 4455566666666665553222 5556666666666666554332 5555666666666666
Q ss_pred cccccCcccccccccceEEEcCCCcccccCCccccCcccCCeeecccCcccccCCccccCCCCCCEEECcCCccccccCc
Q 038612 406 LNGTLPQQILEIRTLSFQLDLSNNLLSGYLPFRVGNLKNLARLDISMNHFFGEIPATLSACTSLEYLYMQGNSFGGRIPL 485 (678)
Q Consensus 406 l~~~~p~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 485 (678)
+.+ ++. +..++.+ +.|++++|.+++. ..+..+++|++|++++|.+++. +.+..+++|++|++++|++++..+.
T Consensus 233 l~~-~~~-~~~l~~L-~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~ 305 (347)
T 4fmz_A 233 ITD-LSP-LANLSQL-TWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDME 305 (347)
T ss_dssp CCC-CGG-GTTCTTC-CEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHH
T ss_pred cCC-Ccc-hhcCCCC-CEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChh
Confidence 653 222 4455555 5666666666643 3466778888888888888753 4577888899999999998888888
Q ss_pred cccCCCCCCEEECCCCcccccCCccCCCCCCCCEEeCCcCcce
Q 038612 486 SLISLKSLKVLDLSRNNLSGKIPEYLENLPFLQYLDLSYNHFE 528 (678)
Q Consensus 486 ~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 528 (678)
.+..+++|++|++++|++++..| +..+++|++|++++|+++
T Consensus 306 ~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 306 VIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp HHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred HhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 88888999999999999887665 778889999999998875
No 43
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.98 E-value=3e-35 Score=316.73 Aligned_cols=384 Identities=17% Similarity=0.143 Sum_probs=205.1
Q ss_pred ccCcEEeccCCCCccCCCcc-CCCCCCCCEEEcccccccc----cCcccccCCCCCcEEECCCCCCCccCChhhhcCCC-
Q 038612 122 SALQAFDVGENTLHGRIPES-LGQLRSLKFLNVEENNFSG----MVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLP- 195 (678)
Q Consensus 122 ~~L~~L~ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~l~- 195 (678)
++|++|++++|.++...... +..+++|++|++++|.++. .++..+..+++|++|++++|.+.+..+..+...++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 34555555555554322221 4455566666666666553 23455566666666666666665444444443444
Q ss_pred ---CCCEEEcccCcCCC----CCCccCcCCCCCcEEeccCCcceeccCCCC-----CCCCCCCeEEcccCcccccCCCCc
Q 038612 196 ---NLKSLIVAQNNLTG----PIPHSLSNASNLIELNLGQNHFTGKVSIDF-----NGLSDLAWLSFEANNLGAEASNDL 263 (678)
Q Consensus 196 ---~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~~~~~~ 263 (678)
+|++|++++|.++. .++..+.++++|++|++++|.+.+..+..+ ...++|++|++++|.+......
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~-- 160 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE-- 160 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH--
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH--
Confidence 57777777776663 345666777777777777777654332221 1234555555555554432211
Q ss_pred ccccccCCCCCCcEEEcccCCCCcccChhHhhc----cccCcEEEccCcceeccCCccCcCCccccccccccceeeeccC
Q 038612 264 DFVFSLTNCSKLEWLELRKNQFGGNLPHFIANL----SKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLIGTIP 339 (678)
Q Consensus 264 ~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~~~----~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 339 (678)
.+...+..+++|++|++++|.+++..+..+... ..+|+.|++++|.+++.... .++
T Consensus 161 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~--------------------~l~ 220 (461)
T 1z7x_W 161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCR--------------------DLC 220 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHH--------------------HHH
T ss_pred HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHH--------------------HHH
Confidence 112234445566666666666554433333321 11355555555555432000 123
Q ss_pred cccCCCcccceeeccCccccccC-----CccccCCCCCcEEeccCCccCcc----CCCCCCCcCCCceEecCCCcccccc
Q 038612 340 HVIGSLKNLQLLYLYGNSLEGNI-----PSSLGNLTLLTKLALDFNNLQGN----IPSSLGSCQNLMELIVSHNKLNGTL 410 (678)
Q Consensus 340 ~~~~~l~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~ 410 (678)
..+..+++|++|++++|.+.+.. +..+..+++|++|++++|.++.. ++..+..+++|++|++++|.+.+..
T Consensus 221 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 300 (461)
T 1z7x_W 221 GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 300 (461)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHH
T ss_pred HHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHH
Confidence 34445555666666665554321 11223456666666666665542 3444445566666666666665433
Q ss_pred Ccccccc-----cccceEEEcCCCccccc----CCccccCcccCCeeecccCcccccCCccccC-----CCCCCEEECcC
Q 038612 411 PQQILEI-----RTLSFQLDLSNNLLSGY----LPFRVGNLKNLARLDISMNHFFGEIPATLSA-----CTSLEYLYMQG 476 (678)
Q Consensus 411 p~~~~~~-----~~l~~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~-----l~~L~~L~L~~ 476 (678)
+..+... +.+ +.|++++|.+++. ++..+..+++|++|++++|.+++..+..+.. .++|++|++++
T Consensus 301 ~~~l~~~l~~~~~~L-~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 379 (461)
T 1z7x_W 301 ARLLCETLLEPGCQL-ESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLAD 379 (461)
T ss_dssp HHHHHHHHTSTTCCC-CEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHhccCCccc-eeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCC
Confidence 3222221 233 5566666665543 3444555677777777777776554443332 56777777777
Q ss_pred Ccccc----ccCccccCCCCCCEEECCCCcccccCCcc----C-CCCCCCCEEeCCcCcce
Q 038612 477 NSFGG----RIPLSLISLKSLKVLDLSRNNLSGKIPEY----L-ENLPFLQYLDLSYNHFE 528 (678)
Q Consensus 477 n~l~~----~~~~~~~~l~~L~~L~ls~n~l~~~~p~~----l-~~l~~L~~L~l~~n~l~ 528 (678)
|.+++ .++..+..+++|++|++++|++++.-... + .....|+.|++.++.+.
T Consensus 380 n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 380 CDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp SCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred CCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence 77765 56666677777777777777776531111 1 12345666666655544
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.4e-30 Score=266.82 Aligned_cols=268 Identities=19% Similarity=0.261 Sum_probs=123.5
Q ss_pred ccCcEEeccCCCCccCCCccCCCCCCCCEEEcccccccccCcccccCCCCCcEEECCCCCCCccCChhhhcCCCCCCEEE
Q 038612 122 SALQAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLI 201 (678)
Q Consensus 122 ~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~ 201 (678)
+.|++|++++|.+++..+..|.++++|++|++++|.+++..|..+.++++|++|++++|.++ .+|..++ ++|++|+
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~---~~L~~L~ 127 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP---KTLQELR 127 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC---TTCCEEE
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc---ccccEEE
Confidence 34555555555555444444555555555555555555444555555555555555555554 3444332 4555555
Q ss_pred cccCcCCCCCCccCcCCCCCcEEeccCCccee--ccCCCCCCCCCCCeEEcccCcccccCCCCcccccccCCCCCCcEEE
Q 038612 202 VAQNNLTGPIPHSLSNASNLIELNLGQNHFTG--KVSIDFNGLSDLAWLSFEANNLGAEASNDLDFVFSLTNCSKLEWLE 279 (678)
Q Consensus 202 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~ 279 (678)
+++|.+++..+..+.++++|+.|++++|.+.. ..+..+..+++|+.|++++|.+..... .+ .++|++|+
T Consensus 128 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-------~~--~~~L~~L~ 198 (330)
T 1xku_A 128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ-------GL--PPSLTELH 198 (330)
T ss_dssp CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS-------SC--CTTCSEEE
T ss_pred CCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCc-------cc--cccCCEEE
Confidence 55555554444455555555555555555532 333444444445555444444433211 01 13455555
Q ss_pred cccCCCCcccChhHhhccccCcEEEccCcceeccCCccCcCCccccccccccceeeeccCcccCCCcccceeeccCcccc
Q 038612 280 LRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLIGTIPHVIGSLKNLQLLYLYGNSLE 359 (678)
Q Consensus 280 L~~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~ 359 (678)
+++|.+.+..|..+..++. |+.|++++|.+++..+..+..+++|+.|++++|++. .+|..+..+++|++|++++|.++
T Consensus 199 l~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~ 276 (330)
T 1xku_A 199 LDGNKITKVDAASLKGLNN-LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276 (330)
T ss_dssp CTTSCCCEECTGGGTTCTT-CCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred CCCCcCCccCHHHhcCCCC-CCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCC
Confidence 5555544444444444433 444444444444444434444444444444444443 33334444444444444444444
Q ss_pred ccCCccccC------CCCCcEEeccCCccCc--cCCCCCCCcCCCceEecCCC
Q 038612 360 GNIPSSLGN------LTLLTKLALDFNNLQG--NIPSSLGSCQNLMELIVSHN 404 (678)
Q Consensus 360 ~~~~~~~~~------l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n 404 (678)
+..+..|.. .+.|+.|++++|.+.. ..|..|..+++++.+++++|
T Consensus 277 ~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 277 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred ccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 333333321 1334444444444331 22333444444444444443
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=9.6e-31 Score=268.20 Aligned_cols=288 Identities=19% Similarity=0.238 Sum_probs=180.8
Q ss_pred CCCEEECCCCCCccccChhhcCCccCcEEeccCCCCccCCCccCCCCCCCCEEEcccccccccCcccccCCCCCcEEECC
Q 038612 99 KLEKLSIAVNHLRGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFLP 178 (678)
Q Consensus 99 ~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 178 (678)
+++.++++++.+. .+|..+. ++|++|++++|.+.+..|..|.++++|++|++++|.+++..|..+.++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 3556666666655 4454442 567777777777776666677777777777777777776667777777777777777
Q ss_pred CCCCCccCChhhhcCCCCCCEEEcccCcCCCCCCccCcCCCCCcEEeccCCccee--ccCCCCCCCCCCCeEEcccCccc
Q 038612 179 ANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLIELNLGQNHFTG--KVSIDFNGLSDLAWLSFEANNLG 256 (678)
Q Consensus 179 ~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~ 256 (678)
+|.++ .+|..++ ++|++|++++|.++...+..+.++++|+.|++++|.++. ..+..+..+ +|+.|++++|.+.
T Consensus 111 ~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 111 KNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp SSCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 77776 5555443 677777777777776555567777777777777777742 444445444 5555555555444
Q ss_pred ccCCCCcccccccCCCCCCcEEEcccCCCCcccChhHhhccccCcEEEccCcceeccCCccCcCCccccccccccceeee
Q 038612 257 AEASNDLDFVFSLTNCSKLEWLELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLIG 336 (678)
Q Consensus 257 ~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 336 (678)
.. |..+. .+|+.|++++|.+++..+..+..+++|+.|++++|++.+
T Consensus 186 ~l-------------------------------~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~ 231 (332)
T 2ft3_A 186 GI-------------------------------PKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM 231 (332)
T ss_dssp SC-------------------------------CSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCC
T ss_pred cc-------------------------------Ccccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCc
Confidence 32 11111 235556666666665555666666677777777776666
Q ss_pred ccCcccCCCcccceeeccCccccccCCccccCCCCCcEEeccCCccCccCCCCCCC------cCCCceEecCCCccc--c
Q 038612 337 TIPHVIGSLKNLQLLYLYGNSLEGNIPSSLGNLTLLTKLALDFNNLQGNIPSSLGS------CQNLMELIVSHNKLN--G 408 (678)
Q Consensus 337 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~l~~n~l~--~ 408 (678)
..+..+..+++|++|++++|++. .+|..+..+++|++|++++|++++..+..|.. .++|+.|++++|++. +
T Consensus 232 ~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~ 310 (332)
T 2ft3_A 232 IENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE 310 (332)
T ss_dssp CCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGG
T ss_pred CChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccc
Confidence 66666666777777777777766 55666666777777777777776555544443 245677777777665 3
Q ss_pred ccCcccccccccceEEEcCCCc
Q 038612 409 TLPQQILEIRTLSFQLDLSNNL 430 (678)
Q Consensus 409 ~~p~~~~~~~~l~~~L~l~~n~ 430 (678)
..|..+..++.+ +.+++++|+
T Consensus 311 ~~~~~~~~l~~L-~~l~l~~n~ 331 (332)
T 2ft3_A 311 VQPATFRCVTDR-LAIQFGNYK 331 (332)
T ss_dssp SCGGGGTTBCCS-TTEEC----
T ss_pred cCcccccccchh-hhhhccccc
Confidence 444555555555 566666653
No 46
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=1.5e-31 Score=272.77 Aligned_cols=278 Identities=19% Similarity=0.202 Sum_probs=184.9
Q ss_pred CCCHHhHHHHHHHHhcCC-CCCCCCCCC----CCCCCCCCcccccccCCCCcEEEEEcCCCCCCCcccCCCCCCCCEEEC
Q 038612 31 HTNETDRLALLAIKSQFH-DPLEVTSSW----DTSVNLCQWTGVTCGRRHQRVTELYLRNQSLGADIGYSSWSKLEKLSI 105 (678)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~-~~~~~~~~w----~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~l~~~~~~~~l~~L~~L~L 105 (678)
.+..+|+.||++||+++. ++.+.+..| ....++|.|.|+.|......+ .....++++.|+|
T Consensus 23 ~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l--------------~~~~~~~l~~L~L 88 (328)
T 4fcg_A 23 TALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLL--------------EDATQPGRVALEL 88 (328)
T ss_dssp CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHH--------------HHHTSTTCCEEEE
T ss_pred ccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHH--------------hcccccceeEEEc
Confidence 456789999999999985 777778889 456789999999995210000 0012344555556
Q ss_pred CCCCCccccChhhcCCccCcEEeccCCCCccCCCccCCCCCCCCEEEcccccccccCcccccCCCCCcEEECCCCCCCcc
Q 038612 106 AVNHLRGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFLPANRLEGI 185 (678)
Q Consensus 106 s~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~ 185 (678)
++|.+. .+|..+.++++|++|++++|.++ .+|..++++++|++|+|++|.++ .+|..+.++++|++|++++|.+.+.
T Consensus 89 ~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~ 165 (328)
T 4fcg_A 89 RSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTE 165 (328)
T ss_dssp ESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCC
T ss_pred cCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccc
Confidence 555555 45555666666666666666666 55666666666666666666666 5566666666666666666665556
Q ss_pred CChhhh--------cCCCCCCEEEcccCcCCCCCCccCcCCCCCcEEeccCCcceeccCCCCCCCCCCCeEEcccCcccc
Q 038612 186 LPLNIG--------FNLPNLKSLIVAQNNLTGPIPHSLSNASNLIELNLGQNHFTGKVSIDFNGLSDLAWLSFEANNLGA 257 (678)
Q Consensus 186 ~p~~~~--------~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 257 (678)
+|..+. ..+++|++|++++|.++ .+|..+.++++|++|++++|++++ +|..+..+++|++|++++|.+.+
T Consensus 166 ~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~ 243 (328)
T 4fcg_A 166 LPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALR 243 (328)
T ss_dssp CCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCC
T ss_pred cChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchh
Confidence 665543 13666777777766666 556666666677777777766664 33456666677777776666555
Q ss_pred cCCCCcccccccCCCCCCcEEEcccCCCCcccChhHhhccccCcEEEccCcceeccCCccCcCCcccccccccccee
Q 038612 258 EASNDLDFVFSLTNCSKLEWLELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQL 334 (678)
Q Consensus 258 ~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~ 334 (678)
..+ ..+..+++|++|++++|.+.+.+|..+..++. |+.|++++|.+.+.+|..+.++++|+.+++..+.+
T Consensus 244 ~~p------~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~-L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 244 NYP------PIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQ-LEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp BCC------CCTTCCCCCCEEECTTCTTCCBCCTTGGGCTT-CCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred hhH------HHhcCCCCCCEEECCCCCchhhcchhhhcCCC-CCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 432 35666777777777777777777777777765 88888888888888888888888888887776543
No 47
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=5e-35 Score=314.98 Aligned_cols=384 Identities=20% Similarity=0.197 Sum_probs=199.8
Q ss_pred CCCEEECCCCCCccccChh-hcCCccCcEEeccCCCCcc----CCCccCCCCCCCCEEEcccccccccCcccc-cCCC--
Q 038612 99 KLEKLSIAVNHLRGQLPAS-IGNLSALQAFDVGENTLHG----RIPESLGQLRSLKFLNVEENNFSGMVPVSI-YNIS-- 170 (678)
Q Consensus 99 ~L~~L~Ls~n~~~~~~~~~-l~~l~~L~~L~ls~n~l~~----~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~-- 170 (678)
+|++|++++|.++...... +..+++|++|++++|.+++ .++..+..+++|++|+|++|.++...+..+ ..++
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 83 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence 3444455444444322222 4444555555555554442 223334444555555555555443222222 1222
Q ss_pred --CCcEEECCCCCCCc----cCChhhhcCCCCCCEEEcccCcCCCCCCcc-----CcCCCCCcEEeccCCcceecc----
Q 038612 171 --SLEMIFLPANRLEG----ILPLNIGFNLPNLKSLIVAQNNLTGPIPHS-----LSNASNLIELNLGQNHFTGKV---- 235 (678)
Q Consensus 171 --~L~~L~l~~n~~~~----~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~-----l~~l~~L~~L~L~~n~l~~~~---- 235 (678)
+|++|++++|.++. .++..+. .+++|++|++++|.+++..+.. ....++|++|++++|++++..
T Consensus 84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~-~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 84 SCKIQKLSLQNCCLTGAGCGVLSSTLR-TLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTT-SCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCceeEEEccCCCCCHHHHHHHHHHHc-cCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 35555555555442 2233333 4455555555555543221111 112345555555555554422
Q ss_pred CCCCCCCCCCCeEEcccCcccccCCCCcccccccC-CCCCCcEEEcccCCCCcc----cChhHhhccccCcEEEccCcce
Q 038612 236 SIDFNGLSDLAWLSFEANNLGAEASNDLDFVFSLT-NCSKLEWLELRKNQFGGN----LPHFIANLSKTMTIIDMGENKL 310 (678)
Q Consensus 236 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~-~~~~L~~L~L~~n~~~~~----~p~~~~~~~~~L~~L~L~~n~l 310 (678)
+..+..+++|++|++++|.+...... .+...+. ..++|++|++++|.+++. ++..+..++. |+.|++++|.+
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~--~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~-L~~L~Ls~n~l 239 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVR--VLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKAS-LRELALGSNKL 239 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHH--HHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTT-CCEEECCSSBC
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHH--HHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCC-ccEEeccCCcC
Confidence 33344455666666666655442211 0111111 356899999999999864 4666666665 99999999988
Q ss_pred eccC-----CccCcCCccccccccccceeeec----cCcccCCCcccceeeccCccccccCCcccc-----CCCCCcEEe
Q 038612 311 SGTI-----PLGIGNLVNLNLFSLHLNQLIGT----IPHVIGSLKNLQLLYLYGNSLEGNIPSSLG-----NLTLLTKLA 376 (678)
Q Consensus 311 ~~~~-----~~~l~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~ 376 (678)
.+.. +..+..+++|+.|++++|.+++. ++..+..+++|++|++++|.+.+..+..+. ..++|++|+
T Consensus 240 ~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~ 319 (461)
T 1z7x_W 240 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLW 319 (461)
T ss_dssp HHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred ChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeE
Confidence 7532 12223466677777777766543 344555566677777776666543322221 224666666
Q ss_pred ccCCccCcc----CCCCCCCcCCCceEecCCCccccccCcccccccccceEEEcCCCcccccCCcccc-CcccCCeeecc
Q 038612 377 LDFNNLQGN----IPSSLGSCQNLMELIVSHNKLNGTLPQQILEIRTLSFQLDLSNNLLSGYLPFRVG-NLKNLARLDIS 451 (678)
Q Consensus 377 L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls 451 (678)
+++|.+++. ++..+..+++|++|++++|++.+..+..+.. .+. ..++|++|+++
T Consensus 320 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~---------------------~l~~~~~~L~~L~L~ 378 (461)
T 1z7x_W 320 VKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ---------------------GLGQPGSVLRVLWLA 378 (461)
T ss_dssp CTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHH---------------------HHTSTTCCCCEEECT
T ss_pred cCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHH---------------------HHcCCCCceEEEECC
Confidence 666665543 2333444455666666666554332222211 111 14577777777
Q ss_pred cCcccc----cCCccccCCCCCCEEECcCCccccccCcc----c-cCCCCCCEEECCCCcccccC
Q 038612 452 MNHFFG----EIPATLSACTSLEYLYMQGNSFGGRIPLS----L-ISLKSLKVLDLSRNNLSGKI 507 (678)
Q Consensus 452 ~n~~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~-~~l~~L~~L~ls~n~l~~~~ 507 (678)
+|.+++ .+|..+..+++|++|++++|++++..... + .....|+.|++.++.+....
T Consensus 379 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~ 443 (461)
T 1z7x_W 379 DCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEM 443 (461)
T ss_dssp TSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHH
T ss_pred CCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHH
Confidence 777765 56666667777777777777776432111 1 12346777777777665433
No 48
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=7e-30 Score=261.76 Aligned_cols=267 Identities=21% Similarity=0.222 Sum_probs=123.3
Q ss_pred CCCEEEcccCcCCCCCCccCcCCCCCcEEeccCCcceeccCCCCCCCCCCCeEEcccCcccccCCCCcccccccCCCCCC
Q 038612 196 NLKSLIVAQNNLTGPIPHSLSNASNLIELNLGQNHFTGKVSIDFNGLSDLAWLSFEANNLGAEASNDLDFVFSLTNCSKL 275 (678)
Q Consensus 196 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L 275 (678)
+|++|++++|.+++..+..|.++++|++|++++|++++..+..|.++++|++|++++|.+..... .+. ++|
T Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~-------~~~--~~L 125 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPP-------NLP--SSL 125 (332)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCS-------SCC--TTC
T ss_pred CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCc-------ccc--ccC
Confidence 44444444444443334444444444444444444444444444444444444444444332211 111 345
Q ss_pred cEEEcccCCCCcccChhHhhccccCcEEEccCcceec--cCCccCcCCccccccccccceeeeccCcccCCCcccceeec
Q 038612 276 EWLELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSG--TIPLGIGNLVNLNLFSLHLNQLIGTIPHVIGSLKNLQLLYL 353 (678)
Q Consensus 276 ~~L~L~~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 353 (678)
++|++++|.+.+..+..+..++. |+.|++++|.++. ..+..+..+ +|+.|++++|++.+ +|..+. ++|++|++
T Consensus 126 ~~L~l~~n~i~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l 200 (332)
T 2ft3_A 126 VELRIHDNRIRKVPKGVFSGLRN-MNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHL 200 (332)
T ss_dssp CEEECCSSCCCCCCSGGGSSCSS-CCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBC
T ss_pred CEEECCCCccCccCHhHhCCCcc-CCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEEC
Confidence 55555555554333333444433 5555555555432 333344444 45555555554443 222221 34555555
Q ss_pred cCccccccCCccccCCCCCcEEeccCCccCccCCCCCCCcCCCceEecCCCccccccCcccccccccceEEEcCCCcccc
Q 038612 354 YGNSLEGNIPSSLGNLTLLTKLALDFNNLQGNIPSSLGSCQNLMELIVSHNKLNGTLPQQILEIRTLSFQLDLSNNLLSG 433 (678)
Q Consensus 354 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~L~l~~n~l~~ 433 (678)
++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++. .+|
T Consensus 201 ~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp---------------------- 257 (332)
T 2ft3_A 201 DHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVP---------------------- 257 (332)
T ss_dssp CSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCC----------------------
T ss_pred CCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecC----------------------
Confidence 555544444444444445555555555444444444444444444444444444 333
Q ss_pred cCCccccCcccCCeeecccCcccccCCccccC------CCCCCEEECcCCccc--cccCccccCCCCCCEEECCCCc
Q 038612 434 YLPFRVGNLKNLARLDISMNHFFGEIPATLSA------CTSLEYLYMQGNSFG--GRIPLSLISLKSLKVLDLSRNN 502 (678)
Q Consensus 434 ~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~------l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~ls~n~ 502 (678)
..+..+++|++|++++|++++..+..|.. ...|+.|++++|.+. +..|..|..+++|+.+++++|+
T Consensus 258 ---~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 258 ---AGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp ---TTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ---hhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 33444455555555555555444433332 245666666666655 4455566666666666666653
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.7e-29 Score=258.81 Aligned_cols=289 Identities=20% Similarity=0.261 Sum_probs=138.2
Q ss_pred CCCEEEcccccccccCcccccCCCCCcEEECCCCCCCccCChhhhcCCCCCCEEEcccCcCCCCCCccCcCCCCCcEEec
Q 038612 147 SLKFLNVEENNFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLIELNL 226 (678)
Q Consensus 147 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 226 (678)
++++++++++.++ .+|..+. ++|++|++++|.+++..+..+. .+++|++|++++|.+++..|..|.++++|++|++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFK-NLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTT-TCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhc-cCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 5666666666665 3443332 4555566665555543333333 5555555555555555544555555555555555
Q ss_pred cCCcceeccCCCCCCCCCCCeEEcccCcccccCCCCcccccccCCCCCCcEEEcccCCCCcccChhHhhccccCcEEEcc
Q 038612 227 GQNHFTGKVSIDFNGLSDLAWLSFEANNLGAEASNDLDFVFSLTNCSKLEWLELRKNQFGGNLPHFIANLSKTMTIIDMG 306 (678)
Q Consensus 227 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~~~~~~L~~L~L~ 306 (678)
++|+++. +|..+. ++|++|++++|.+.+..+..+..++. |+.|+++
T Consensus 108 s~n~l~~-l~~~~~--------------------------------~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~ 153 (330)
T 1xku_A 108 SKNQLKE-LPEKMP--------------------------------KTLQELRVHENEITKVRKSVFNGLNQ-MIVVELG 153 (330)
T ss_dssp CSSCCSB-CCSSCC--------------------------------TTCCEEECCSSCCCBBCHHHHTTCTT-CCEEECC
T ss_pred CCCcCCc-cChhhc--------------------------------ccccEEECCCCcccccCHhHhcCCcc-ccEEECC
Confidence 5555442 221111 34555555555555444444444443 5555555
Q ss_pred Ccceec--cCCccCcCCccccccccccceeeeccCcccCCCcccceeeccCccccccCCccccCCCCCcEEeccCCccCc
Q 038612 307 ENKLSG--TIPLGIGNLVNLNLFSLHLNQLIGTIPHVIGSLKNLQLLYLYGNSLEGNIPSSLGNLTLLTKLALDFNNLQG 384 (678)
Q Consensus 307 ~n~l~~--~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 384 (678)
+|.+.. ..+..+..+++|+.|++++|.+.. +|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+.+
T Consensus 154 ~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 230 (330)
T 1xku_A 154 TNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 230 (330)
T ss_dssp SSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE
T ss_pred CCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCce
Confidence 555532 333344444444444444444432 222111 344444444444444444444444444444444444444
Q ss_pred cCCCCCCCcCCCceEecCCCccccccCcccccccccceEEEcCCCcccccCCccccCcccCCeeecccCcccccCCcccc
Q 038612 385 NIPSSLGSCQNLMELIVSHNKLNGTLPQQILEIRTLSFQLDLSNNLLSGYLPFRVGNLKNLARLDISMNHFFGEIPATLS 464 (678)
Q Consensus 385 ~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~ 464 (678)
..+..+..+++|++|++++|++. .+ |..+..+++|++|++++|++++..+..|.
T Consensus 231 ~~~~~~~~l~~L~~L~L~~N~l~-~l-------------------------p~~l~~l~~L~~L~l~~N~i~~~~~~~f~ 284 (330)
T 1xku_A 231 VDNGSLANTPHLRELHLNNNKLV-KV-------------------------PGGLADHKYIQVVYLHNNNISAIGSNDFC 284 (330)
T ss_dssp ECTTTGGGSTTCCEEECCSSCCS-SC-------------------------CTTTTTCSSCCEEECCSSCCCCCCTTSSS
T ss_pred eChhhccCCCCCCEEECCCCcCc-cC-------------------------ChhhccCCCcCEEECCCCcCCccChhhcC
Confidence 43334444444444444444443 33 33344444555555555555443333332
Q ss_pred C------CCCCCEEECcCCcccc--ccCccccCCCCCCEEECCCCc
Q 038612 465 A------CTSLEYLYMQGNSFGG--RIPLSLISLKSLKVLDLSRNN 502 (678)
Q Consensus 465 ~------l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~ls~n~ 502 (678)
. ...|+.|++++|.+.. ..|..|..+++++.+++++|+
T Consensus 285 ~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 285 PPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 2 2456666666666542 345566666677777776663
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.5e-28 Score=254.10 Aligned_cols=290 Identities=16% Similarity=0.176 Sum_probs=157.9
Q ss_pred CCCCCCCCCcccccccCCCCcEEEEEcCCCCCCCcccCCCCCCCCEEECCCCCCccccChhhcCCccCcEEeccCCCCcc
Q 038612 57 WDTSVNLCQWTGVTCGRRHQRVTELYLRNQSLGADIGYSSWSKLEKLSIAVNHLRGQLPASIGNLSALQAFDVGENTLHG 136 (678)
Q Consensus 57 w~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~ 136 (678)
|......|.|.++ |+ .+++.++..+. .-.++|++|++++|.+++..+..+.++++|++|++++|.+++
T Consensus 23 ~~~~~~~C~~~~~-c~----------~~~~~l~~iP~-~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~ 90 (353)
T 2z80_A 23 SNQASLSCDRNGI-CK----------GSSGSLNSIPS-GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT 90 (353)
T ss_dssp ----CCEECTTSE-EE----------CCSTTCSSCCT-TCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCE
T ss_pred CCccCCCCCCCeE-ee----------CCCCCcccccc-cccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCc
Confidence 3334567888876 54 23444332211 112456666666666665555556666666666666666665
Q ss_pred CCCccCCCCCCCCEEEcccccccccCcccccCCCCCcEEECCCCCCCccCCh-hhhcCCCCCCEEEcccC-cCCCCCCcc
Q 038612 137 RIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFLPANRLEGILPL-NIGFNLPNLKSLIVAQN-NLTGPIPHS 214 (678)
Q Consensus 137 ~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~-~~~~~l~~L~~L~l~~n-~l~~~~~~~ 214 (678)
..|..|.++++|++|++++|.+++..+..+.++++|++|++++|+++ .+|. ..+..+++|++|++++| .++...+..
T Consensus 91 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 169 (353)
T 2z80_A 91 IEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKD 169 (353)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTT
T ss_pred cCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHH
Confidence 55555666666666666666665444444555666666666666555 2333 22224555555555555 244334444
Q ss_pred CcCCCCCcEEeccCCcceeccCCCCCCCCCCCeEEcccCcccccCCCCcccccccCCCCCCcEEEcccCCCCcccChhHh
Q 038612 215 LSNASNLIELNLGQNHFTGKVSIDFNGLSDLAWLSFEANNLGAEASNDLDFVFSLTNCSKLEWLELRKNQFGGNLPHFIA 294 (678)
Q Consensus 215 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~ 294 (678)
+.++++|++|++++|++.+..+.. +..+++|++|++++|.+. .+|..+.
T Consensus 170 ~~~l~~L~~L~l~~n~l~~~~~~~------------------------------l~~l~~L~~L~l~~n~l~-~~~~~~~ 218 (353)
T 2z80_A 170 FAGLTFLEELEIDASDLQSYEPKS------------------------------LKSIQNVSHLILHMKQHI-LLLEIFV 218 (353)
T ss_dssp TTTCCEEEEEEEEETTCCEECTTT------------------------------TTTCSEEEEEEEECSCST-THHHHHH
T ss_pred ccCCCCCCEEECCCCCcCccCHHH------------------------------HhccccCCeecCCCCccc-cchhhhh
Confidence 555555555555555554444433 445556666666666654 3333333
Q ss_pred hccccCcEEEccCcceeccCCccCcCCccccccccccceeeeccCcccCCCcccceeeccCccccc----cCCccccCCC
Q 038612 295 NLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLIGTIPHVIGSLKNLQLLYLYGNSLEG----NIPSSLGNLT 370 (678)
Q Consensus 295 ~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~ 370 (678)
....+|+.|++++|.+++..+..+.. ......++.++++++.+.+ .+|..+..++
T Consensus 219 ~~~~~L~~L~L~~n~l~~~~~~~l~~---------------------~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~ 277 (353)
T 2z80_A 219 DVTSSVECLELRDTDLDTFHFSELST---------------------GETNSLIKKFTFRNVKITDESLFQVMKLLNQIS 277 (353)
T ss_dssp HHTTTEEEEEEESCBCTTCCCC---------------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCT
T ss_pred hhcccccEEECCCCcccccccccccc---------------------ccccchhhccccccccccCcchhhhHHHHhccc
Confidence 32234777777777776543332221 1122334444444444433 3556677777
Q ss_pred CCcEEeccCCccCccCCCCCCCcCCCceEecCCCccccccC
Q 038612 371 LLTKLALDFNNLQGNIPSSLGSCQNLMELIVSHNKLNGTLP 411 (678)
Q Consensus 371 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 411 (678)
+|++|++++|+++...+..|..+++|++|++++|++.+..|
T Consensus 278 ~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 278 GLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 78888888887774333335777888888888887775544
No 51
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=3e-31 Score=294.88 Aligned_cols=424 Identities=13% Similarity=0.119 Sum_probs=272.6
Q ss_pred CCCCCCCCEEECCCCCCc---cccChhh------------cCCccCcEEeccCCCCccCCCccCCCC--CCCCEEEcccc
Q 038612 94 YSSWSKLEKLSIAVNHLR---GQLPASI------------GNLSALQAFDVGENTLHGRIPESLGQL--RSLKFLNVEEN 156 (678)
Q Consensus 94 ~~~l~~L~~L~Ls~n~~~---~~~~~~l------------~~l~~L~~L~ls~n~l~~~~p~~~~~l--~~L~~L~L~~n 156 (678)
+.++++|++|+++++... +.+|..+ ..+++|++|+|++|.+++..+..+... .+|++|+|++|
T Consensus 69 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~ 148 (592)
T 3ogk_B 69 SRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKC 148 (592)
T ss_dssp HHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESC
T ss_pred HHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCC
Confidence 456788999999875321 2233222 278999999999998886666666553 45999999988
Q ss_pred c-ccc-cCcccccCCCCCcEEECCCCCCCccCCh---hhhcCCCCCCEEEcccCcCCC----CCCccCcCCCCCcEEecc
Q 038612 157 N-FSG-MVPVSIYNISSLEMIFLPANRLEGILPL---NIGFNLPNLKSLIVAQNNLTG----PIPHSLSNASNLIELNLG 227 (678)
Q Consensus 157 ~-l~~-~~~~~~~~l~~L~~L~l~~n~~~~~~p~---~~~~~l~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~L~ 227 (678)
. ++. .++....++++|++|++++|.+++.-.. .+...+++|++|++++|.+++ .++..+.++++|+.|+++
T Consensus 149 ~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~ 228 (592)
T 3ogk_B 149 SGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVG 228 (592)
T ss_dssp EEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECS
T ss_pred CCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEecc
Confidence 6 221 1233345789999999999988755322 233478999999999999873 334455688999999999
Q ss_pred CCcceeccCCCCCCCCCCCeEEcccCcccccCCCCcccccccCCCCCCcEEEcccCCCCcccChhHhhccccCcEEEccC
Q 038612 228 QNHFTGKVSIDFNGLSDLAWLSFEANNLGAEASNDLDFVFSLTNCSKLEWLELRKNQFGGNLPHFIANLSKTMTIIDMGE 307 (678)
Q Consensus 228 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~~~~~~L~~L~L~~ 307 (678)
+|.+.+ ++..+..+++|++|+++........ ......+..+++|+.|+++++. ...+|..+..++. |+.|++++
T Consensus 229 ~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~-L~~L~Ls~ 302 (592)
T 3ogk_B 229 DFEILE-LVGFFKAAANLEEFCGGSLNEDIGM---PEKYMNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQ-IRKLDLLY 302 (592)
T ss_dssp SCBGGG-GHHHHHHCTTCCEEEECBCCCCTTC---TTSSSCCCCCTTCCEEEETTCC-TTTGGGGGGGGGG-CCEEEETT
T ss_pred CccHHH-HHHHHhhhhHHHhhcccccccccch---HHHHHHhhccccccccCccccc-hhHHHHHHhhcCC-CcEEecCC
Confidence 998876 4566888999999999864322111 1233467788899999998854 3466777766665 99999999
Q ss_pred cceeccCC-ccCcCCccccccccccceeeeccCcccCCCcccceeeccC-----------ccccccC-CccccCCCCCcE
Q 038612 308 NKLSGTIP-LGIGNLVNLNLFSLHLNQLIGTIPHVIGSLKNLQLLYLYG-----------NSLEGNI-PSSLGNLTLLTK 374 (678)
Q Consensus 308 n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~-----------n~l~~~~-~~~~~~l~~L~~ 374 (678)
|.+++... ..+..+++|+.|+++++...+.++.....+++|++|++++ +.+++.. +.....+++|++
T Consensus 303 ~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~ 382 (592)
T 3ogk_B 303 ALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEY 382 (592)
T ss_dssp CCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSE
T ss_pred CcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeE
Confidence 98765433 3357788888888884432333344445678888888883 4554332 222345788888
Q ss_pred EeccCCccCccCCCCCCC-cCCCceEecC----CCccccc-----cCcccccccccceEEEcCCCc--ccccCCcccc-C
Q 038612 375 LALDFNNLQGNIPSSLGS-CQNLMELIVS----HNKLNGT-----LPQQILEIRTLSFQLDLSNNL--LSGYLPFRVG-N 441 (678)
Q Consensus 375 L~L~~n~l~~~~~~~~~~-l~~L~~L~l~----~n~l~~~-----~p~~~~~~~~l~~~L~l~~n~--l~~~~~~~~~-~ 441 (678)
|++..|.+++..+..+.. +++|+.|+++ .|.+++. ++..+..++.+ +.|+++.|. +++..+..+. .
T Consensus 383 L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L-~~L~L~~~~~~l~~~~~~~~~~~ 461 (592)
T 3ogk_B 383 MAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKL-RRFAFYLRQGGLTDLGLSYIGQY 461 (592)
T ss_dssp EEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTC-CEEEEECCGGGCCHHHHHHHHHS
T ss_pred EEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCC-CEEEEecCCCCccHHHHHHHHHh
Confidence 888878777655555544 7788888885 4555532 22224445555 666665432 4433332222 2
Q ss_pred cccCCeeecccCccccc-CCccccCCCCCCEEECcCCccccc-cCccccCCCCCCEEECCCCcccccCCccC-CCCCCCC
Q 038612 442 LKNLARLDISMNHFFGE-IPATLSACTSLEYLYMQGNSFGGR-IPLSLISLKSLKVLDLSRNNLSGKIPEYL-ENLPFLQ 518 (678)
Q Consensus 442 l~~L~~L~Ls~n~~~~~-~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~ls~n~l~~~~p~~l-~~l~~L~ 518 (678)
+++|++|+|++|++++. ++..+..+++|++|+|++|.+++. ++.....+++|+.|++++|+++..-...+ ..++.+.
T Consensus 462 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~ 541 (592)
T 3ogk_B 462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWN 541 (592)
T ss_dssp CTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEE
T ss_pred CccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcE
Confidence 56677777777766542 333445666777777777766543 23334456667777777777664422222 2345554
Q ss_pred EEeCCc
Q 038612 519 YLDLSY 524 (678)
Q Consensus 519 ~L~l~~ 524 (678)
...+..
T Consensus 542 ~~~~~~ 547 (592)
T 3ogk_B 542 IELIPS 547 (592)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 444433
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=3e-28 Score=246.71 Aligned_cols=273 Identities=23% Similarity=0.251 Sum_probs=199.9
Q ss_pred EEEcccCCCCcccChhHhhccccCcEEEccCcceeccCCccCcCCccccccccccceeeec--cCcccCCCcccceeecc
Q 038612 277 WLELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLIGT--IPHVIGSLKNLQLLYLY 354 (678)
Q Consensus 277 ~L~L~~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~l~ 354 (678)
.++++++.++ .+|.. .+.+++.|++++|+++...+..+.++++|+.|++++|++... .+..+..+++|++|+++
T Consensus 11 ~l~c~~~~l~-~ip~~---~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 11 EIRCNSKGLT-SVPTG---IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp EEECCSSCCS-SCCSC---CCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred EEEcCCCCcc-cCCCC---CCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 4555555544 33332 223477777777777644444467777777777777766532 34555667788888888
Q ss_pred CccccccCCccccCCCCCcEEeccCCccCccCC-CCCCCcCCCceEecCCCccccccCcccccccccceEEEcCCCcccc
Q 038612 355 GNSLEGNIPSSLGNLTLLTKLALDFNNLQGNIP-SSLGSCQNLMELIVSHNKLNGTLPQQILEIRTLSFQLDLSNNLLSG 433 (678)
Q Consensus 355 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~L~l~~n~l~~ 433 (678)
+|.+.+ +|..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..++.+ +.|++++|.+.+
T Consensus 87 ~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~ 164 (306)
T 2z66_A 87 FNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL-EVLKMAGNSFQE 164 (306)
T ss_dssp SCSEEE-EEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTC-CEEECTTCEEGG
T ss_pred CCcccc-ChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCC-CEEECCCCcccc
Confidence 887763 55557778888888888887775544 467777888888888888776666667777777 778888888776
Q ss_pred -cCCccccCcccCCeeecccCcccccCCccccCCCCCCEEECcCCccccccCccccCCCCCCEEECCCCcccccCCccCC
Q 038612 434 -YLPFRVGNLKNLARLDISMNHFFGEIPATLSACTSLEYLYMQGNSFGGRIPLSLISLKSLKVLDLSRNNLSGKIPEYLE 512 (678)
Q Consensus 434 -~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~ 512 (678)
..|..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..|..+.
T Consensus 165 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 244 (306)
T 2z66_A 165 NFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 244 (306)
T ss_dssp GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC
T ss_pred ccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHH
Confidence 5777888899999999999999988888899999999999999999888787889999999999999999999998888
Q ss_pred CCC-CCCEEeCCcCcceeeCCCCCc---cCCCCceeccCCCCCcccC
Q 038612 513 NLP-FLQYLDLSYNHFEGQVPAKGV---FHNKTSISLVGNENLCGGL 555 (678)
Q Consensus 513 ~l~-~L~~L~l~~n~l~~~~p~~~~---~~~l~~~~~~~n~~lc~~~ 555 (678)
.++ +|++|++++|++.+..+.... +...+.+....+...|..+
T Consensus 245 ~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p 291 (306)
T 2z66_A 245 HFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATP 291 (306)
T ss_dssp CCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEES
T ss_pred hhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCc
Confidence 885 899999999999887553211 1222333334455566543
No 53
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=2.5e-31 Score=295.51 Aligned_cols=406 Identities=13% Similarity=0.092 Sum_probs=281.9
Q ss_pred cChhhcCCccCcEEeccCCCC---ccCCCccCC------------CCCCCCEEEcccccccccCcccccCC--CCCcEEE
Q 038612 114 LPASIGNLSALQAFDVGENTL---HGRIPESLG------------QLRSLKFLNVEENNFSGMVPVSIYNI--SSLEMIF 176 (678)
Q Consensus 114 ~~~~l~~l~~L~~L~ls~n~l---~~~~p~~~~------------~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~ 176 (678)
.+..+..+++|++|+++++.. .+.+|..++ .+++|++|+|++|.+++..+..+... .+|++|+
T Consensus 65 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~ 144 (592)
T 3ogk_B 65 PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLK 144 (592)
T ss_dssp HHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEE
T ss_pred hHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEE
Confidence 345567889999999987643 134444443 68899999999998887666666663 4499999
Q ss_pred CCCCC-CCccCChhhhcCCCCCCEEEcccCcCCCC----CCccCcCCCCCcEEeccCCcce----eccCCCCCCCCCCCe
Q 038612 177 LPANR-LEGILPLNIGFNLPNLKSLIVAQNNLTGP----IPHSLSNASNLIELNLGQNHFT----GKVSIDFNGLSDLAW 247 (678)
Q Consensus 177 l~~n~-~~~~~p~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~ 247 (678)
+++|. +.......+...+++|++|++++|.+++. ++..+..+++|++|++++|.++ +..+..+..+++|++
T Consensus 145 L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~ 224 (592)
T 3ogk_B 145 LDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVS 224 (592)
T ss_dssp EESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCE
T ss_pred CcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcE
Confidence 99886 22111122334789999999999988755 3334567899999999999886 233444567889999
Q ss_pred EEcccCcccccCCCCcccccccCCCCCCcEEEcccCCCC---cccChhHhhccccCcEEEccCcceeccCCccCcCCccc
Q 038612 248 LSFEANNLGAEASNDLDFVFSLTNCSKLEWLELRKNQFG---GNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVNL 324 (678)
Q Consensus 248 L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~---~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L 324 (678)
|++++|.+... +..+..+++|++|+++.+... ...+..+..++ +|+.++++++. .+.+|..+..+++|
T Consensus 225 L~L~~~~~~~l-------~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~-~~~l~~~~~~~~~L 295 (592)
T 3ogk_B 225 VKVGDFEILEL-------VGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPR-KLCRLGLSYMG-PNEMPILFPFAAQI 295 (592)
T ss_dssp EECSSCBGGGG-------HHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCT-TCCEEEETTCC-TTTGGGGGGGGGGC
T ss_pred EeccCccHHHH-------HHHHhhhhHHHhhcccccccccchHHHHHHhhccc-cccccCccccc-hhHHHHHHhhcCCC
Confidence 99998877653 235667788999998864322 22333344444 48888888753 33566677788899
Q ss_pred cccccccceeeeccC-cccCCCcccceeeccCccccccCCccccCCCCCcEEeccC-----------CccCcc-CCCCCC
Q 038612 325 NLFSLHLNQLIGTIP-HVIGSLKNLQLLYLYGNSLEGNIPSSLGNLTLLTKLALDF-----------NNLQGN-IPSSLG 391 (678)
Q Consensus 325 ~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~-----------n~l~~~-~~~~~~ 391 (678)
+.|++++|.+.+... ..+..+++|++|+++++...+.++.....+++|++|++++ +.++.. ++....
T Consensus 296 ~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~ 375 (592)
T 3ogk_B 296 RKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQ 375 (592)
T ss_dssp CEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHH
T ss_pred cEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHh
Confidence 999999888655433 3457889999999984333333344446788899999983 455532 222234
Q ss_pred CcCCCceEecCCCccccccCccccc-ccccceEEEcC----CCccccc-----CCccccCcccCCeeecccCc--ccccC
Q 038612 392 SCQNLMELIVSHNKLNGTLPQQILE-IRTLSFQLDLS----NNLLSGY-----LPFRVGNLKNLARLDISMNH--FFGEI 459 (678)
Q Consensus 392 ~l~~L~~L~l~~n~l~~~~p~~~~~-~~~l~~~L~l~----~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~--~~~~~ 459 (678)
.+++|++|+++.|.+++..+..+.. ++.+ +.|+++ .|.+++. ++..+..+++|++|++++|. +++..
T Consensus 376 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L-~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~ 454 (592)
T 3ogk_B 376 GCQELEYMAVYVSDITNESLESIGTYLKNL-CDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLG 454 (592)
T ss_dssp HCTTCSEEEEEESCCCHHHHHHHHHHCCSC-CEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHH
T ss_pred hCccCeEEEeecCCccHHHHHHHHhhCCCC-cEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHH
Confidence 5788999999888887766666655 6666 788885 5666653 33345668889999997543 55554
Q ss_pred Ccccc-CCCCCCEEECcCCccccc-cCccccCCCCCCEEECCCCccccc-CCccCCCCCCCCEEeCCcCccee
Q 038612 460 PATLS-ACTSLEYLYMQGNSFGGR-IPLSLISLKSLKVLDLSRNNLSGK-IPEYLENLPFLQYLDLSYNHFEG 529 (678)
Q Consensus 460 ~~~~~-~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~ls~n~l~~~-~p~~l~~l~~L~~L~l~~n~l~~ 529 (678)
+..+. .+++|++|++++|++++. ++..+..+++|++|++++|.+++. ++..+..+++|++|++++|+++.
T Consensus 455 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~ 527 (592)
T 3ogk_B 455 LSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASM 527 (592)
T ss_dssp HHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred HHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence 44443 478899999999988763 455567788999999999988754 34444578889999999998653
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=1.3e-27 Score=241.94 Aligned_cols=252 Identities=18% Similarity=0.234 Sum_probs=164.0
Q ss_pred CCcccccccCCCCcEEEEEcCCCCCCCcccCCCCCCCCEEECCCCCCccccChhhcCCccCcEEeccCCCCccC--CCcc
Q 038612 64 CQWTGVTCGRRHQRVTELYLRNQSLGADIGYSSWSKLEKLSIAVNHLRGQLPASIGNLSALQAFDVGENTLHGR--IPES 141 (678)
Q Consensus 64 c~w~gv~c~~~~~~v~~l~l~~~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~--~p~~ 141 (678)
|.|.++.|... .+...+. .-.++|++|++++|.+....+..|.++++|++|++++|.++.. .+..
T Consensus 7 C~~~~l~c~~~------------~l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 73 (306)
T 2z66_A 7 CSGTEIRCNSK------------GLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQS 73 (306)
T ss_dssp EETTEEECCSS------------CCSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHH
T ss_pred eCCCEEEcCCC------------CcccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccc
Confidence 67887777532 2222111 1235788888888888755555578888888888888887632 3555
Q ss_pred CCCCCCCCEEEcccccccccCcccccCCCCCcEEECCCCCCCccCChhhhcCCCCCCEEEcccCcCCCCCCccCcCCCCC
Q 038612 142 LGQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNL 221 (678)
Q Consensus 142 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 221 (678)
+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++..+...+..+++|++|++++|.+++..+..+.++++|
T Consensus 74 ~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 152 (306)
T 2z66_A 74 DFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 152 (306)
T ss_dssp HHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTC
T ss_pred cccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCC
Confidence 667788888888888877 4666678888888888888887754442333377788888888887777777777777788
Q ss_pred cEEeccCCccee-ccCCCCCCCCCCCeEEcccCcccccCCCCcccccccCCCCCCcEEEcccCCCCcccChhHhhccccC
Q 038612 222 IELNLGQNHFTG-KVSIDFNGLSDLAWLSFEANNLGAEASNDLDFVFSLTNCSKLEWLELRKNQFGGNLPHFIANLSKTM 300 (678)
Q Consensus 222 ~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~~~~~~L 300 (678)
++|++++|.+.+ ..|..+..+++|++|++++|.+....+ ..+..+++|++|++++|.+.+..+..+..++. |
T Consensus 153 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L 225 (306)
T 2z66_A 153 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP------TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS-L 225 (306)
T ss_dssp CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT------TTTTTCTTCCEEECTTSCCSBCCSGGGTTCTT-C
T ss_pred CEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCH------HHhcCCCCCCEEECCCCccCccChhhccCccc-C
Confidence 888888777765 456666667777777776666655432 24455566666666666665544444444443 5
Q ss_pred cEEEccCcceeccCCccCcCCc-cccccccccceeee
Q 038612 301 TIIDMGENKLSGTIPLGIGNLV-NLNLFSLHLNQLIG 336 (678)
Q Consensus 301 ~~L~L~~n~l~~~~~~~l~~l~-~L~~L~l~~n~~~~ 336 (678)
+.|++++|.+.+..|..+..++ +|+.|++++|.+.+
T Consensus 226 ~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 226 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred CEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 5555555555555555555542 55555555555543
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=7.8e-27 Score=249.65 Aligned_cols=252 Identities=20% Similarity=0.215 Sum_probs=212.5
Q ss_pred CcEEEcccCCCCcccChhHhhccccCcEEEccCcceeccCCccCcCCccccccccccceeeeccCcccCCCcccceeecc
Q 038612 275 LEWLELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLIGTIPHVIGSLKNLQLLYLY 354 (678)
Q Consensus 275 L~~L~L~~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 354 (678)
...++.++..++ .+|.. ++.+++.|++++|++++..+..|.++++|+.|++++|++.+..+..|.++++|++|+|+
T Consensus 56 ~~~v~c~~~~l~-~iP~~---~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQG---IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SCEEECCSSCCS-SCCSC---CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CcEEEECCCCcC-ccCCC---CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 456666666655 34432 33458888888888888888888888999999999998888888888889999999999
Q ss_pred CccccccCCccccCCCCCcEEeccCCccCccCCCCCCCcCCCceEecCCCccccccCc-ccccccccceEEEcCCCcccc
Q 038612 355 GNSLEGNIPSSLGNLTLLTKLALDFNNLQGNIPSSLGSCQNLMELIVSHNKLNGTLPQ-QILEIRTLSFQLDLSNNLLSG 433 (678)
Q Consensus 355 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~~~~l~~~L~l~~n~l~~ 433 (678)
+|.+++..+..+..+++|++|++++|.+....+..|..+++|+.|++++|...+.++. .+..++.+ +.|++++|.+++
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L-~~L~L~~n~l~~ 210 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNL-KYLNLGMCNIKD 210 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTC-CEEECTTSCCSS
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCC-CEEECCCCcccc
Confidence 9998877777788899999999999998877777888899999999998554445554 46667777 889999999886
Q ss_pred cCCccccCcccCCeeecccCcccccCCccccCCCCCCEEECcCCccccccCccccCCCCCCEEECCCCcccccCCccCCC
Q 038612 434 YLPFRVGNLKNLARLDISMNHFFGEIPATLSACTSLEYLYMQGNSFGGRIPLSLISLKSLKVLDLSRNNLSGKIPEYLEN 513 (678)
Q Consensus 434 ~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~ 513 (678)
. | .+..+++|++|+|++|.+++..|..|..+++|++|+|++|++++..+..|..+++|+.|+|++|++++..+..+..
T Consensus 211 ~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 288 (452)
T 3zyi_A 211 M-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTP 288 (452)
T ss_dssp C-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTT
T ss_pred c-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcc
Confidence 5 3 4788899999999999999988999999999999999999999999999999999999999999999888888999
Q ss_pred CCCCCEEeCCcCcceeeCCC
Q 038612 514 LPFLQYLDLSYNHFEGQVPA 533 (678)
Q Consensus 514 l~~L~~L~l~~n~l~~~~p~ 533 (678)
+++|+.|++++|++.+....
T Consensus 289 l~~L~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 289 LRYLVELHLHHNPWNCDCDI 308 (452)
T ss_dssp CTTCCEEECCSSCEECSTTT
T ss_pred ccCCCEEEccCCCcCCCCCc
Confidence 99999999999999987653
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1.2e-27 Score=239.64 Aligned_cols=250 Identities=24% Similarity=0.192 Sum_probs=144.7
Q ss_pred cEEEcccCCCCcccChhHhhccccCcEEEccCcceeccCCccCcCCccccccccccceeeeccCcccCCCcccceeeccC
Q 038612 276 EWLELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLIGTIPHVIGSLKNLQLLYLYG 355 (678)
Q Consensus 276 ~~L~L~~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~ 355 (678)
++++.+++.+. .+|.. .+.+++.|++++|.+++..+..+..+++|+.|++++|.+.+..|..+..+++|++|++++
T Consensus 14 ~~~~c~~~~l~-~ip~~---~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVG---IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCS-SCCTT---CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc-cCCcC---CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 45566555554 23321 223355555555555544444455555555555555555544444455555555555555
Q ss_pred cc-ccccCCccccCCCCCcEEeccCCccCccCCCCCCCcCCCceEecCCCccccccCcccccccccceEEEcCCCccccc
Q 038612 356 NS-LEGNIPSSLGNLTLLTKLALDFNNLQGNIPSSLGSCQNLMELIVSHNKLNGTLPQQILEIRTLSFQLDLSNNLLSGY 434 (678)
Q Consensus 356 n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~L~l~~n~l~~~ 434 (678)
|. +.+..+..+..+++|++|++++|.+.+..+..+..+++|++ |++++|.+++.
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~-------------------------L~l~~n~l~~~ 144 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY-------------------------LYLQDNALQAL 144 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE-------------------------EECCSSCCCCC
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCE-------------------------EECCCCccccc
Confidence 54 44333444444555555555555544444444444444444 55555555544
Q ss_pred CCccccCcccCCeeecccCcccccCCccccCCCCCCEEECcCCccccccCccccCCCCCCEEECCCCcccccCCccCCCC
Q 038612 435 LPFRVGNLKNLARLDISMNHFFGEIPATLSACTSLEYLYMQGNSFGGRIPLSLISLKSLKVLDLSRNNLSGKIPEYLENL 514 (678)
Q Consensus 435 ~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l 514 (678)
.+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..|..+..+++|+.|++++|.+++..+..+..+
T Consensus 145 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 224 (285)
T 1ozn_A 145 PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPL 224 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTC
T ss_pred CHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccC
Confidence 44556666777777777777775555567777777777777777777777777777777777777777776665667777
Q ss_pred CCCCEEeCCcCcceeeCCCCCccCCCCceeccCCCCCccc
Q 038612 515 PFLQYLDLSYNHFEGQVPAKGVFHNKTSISLVGNENLCGG 554 (678)
Q Consensus 515 ~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~n~~lc~~ 554 (678)
++|++|++++|++.+..+..+...+++......+...|..
T Consensus 225 ~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~ 264 (285)
T 1ozn_A 225 RALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSL 264 (285)
T ss_dssp TTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEE
T ss_pred cccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccCC
Confidence 7777777777777766554333333444444445555544
No 57
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=1.6e-27 Score=242.83 Aligned_cols=224 Identities=22% Similarity=0.303 Sum_probs=181.8
Q ss_pred cCcEEEccCcceeccCCccCcCCccccccccccceeeeccCcccCCCcccceeeccCccccccCCccccCCCCCcEEecc
Q 038612 299 TMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLIGTIPHVIGSLKNLQLLYLYGNSLEGNIPSSLGNLTLLTKLALD 378 (678)
Q Consensus 299 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 378 (678)
.++.|++++|.+. .+|..+..+++|++|++++|.+. .+|..++.+++|++|++++|.+. .+|..++++++|++|+++
T Consensus 82 ~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 82 GRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR 158 (328)
T ss_dssp TCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEE
T ss_pred ceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECC
Confidence 3677777777776 56666777777777777777776 66777777777777777777777 567777777777777777
Q ss_pred CCccCccCCCCCCC---------cCCCceEecCCCccccccCcccccccccceEEEcCCCcccccCCccccCcccCCeee
Q 038612 379 FNNLQGNIPSSLGS---------CQNLMELIVSHNKLNGTLPQQILEIRTLSFQLDLSNNLLSGYLPFRVGNLKNLARLD 449 (678)
Q Consensus 379 ~n~l~~~~~~~~~~---------l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 449 (678)
+|++.+.+|..+.. +++|++|++++|++. .+|..+..++.+ +.|++++|.+++ +|..+..+++|++|+
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L-~~L~L~~N~l~~-l~~~l~~l~~L~~L~ 235 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNL-KSLKIRNSPLSA-LGPAIHHLPKLEELD 235 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTC-CEEEEESSCCCC-CCGGGGGCTTCCEEE
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCC-CEEEccCCCCCc-CchhhccCCCCCEEE
Confidence 77777777766544 888888888888887 778888888877 788888888885 555688889999999
Q ss_pred cccCcccccCCccccCCCCCCEEECcCCccccccCccccCCCCCCEEECCCCcccccCCccCCCCCCCCEEeCCcCcce
Q 038612 450 ISMNHFFGEIPATLSACTSLEYLYMQGNSFGGRIPLSLISLKSLKVLDLSRNNLSGKIPEYLENLPFLQYLDLSYNHFE 528 (678)
Q Consensus 450 Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 528 (678)
+++|++.+.+|..+..+++|++|+|++|++.+.+|..+..+++|+.|++++|++.+.+|+.+..+++|+.+++..+.+.
T Consensus 236 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 9999998889999999999999999999998899988999999999999999999999999999999999998876553
No 58
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=1.1e-26 Score=247.48 Aligned_cols=252 Identities=20% Similarity=0.215 Sum_probs=215.3
Q ss_pred CcEEEcccCCCCcccChhHhhccccCcEEEccCcceeccCCccCcCCccccccccccceeeeccCcccCCCcccceeecc
Q 038612 275 LEWLELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLIGTIPHVIGSLKNLQLLYLY 354 (678)
Q Consensus 275 L~~L~L~~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~ 354 (678)
.+.++.++..+. .+|..+ +.+++.|+|++|++.+..+..|.++++|+.|++++|++.+..+..|.++++|++|+|+
T Consensus 45 ~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSCCCS-SCCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCCCCcC-cCCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 456666666665 455433 3458889999999888888889999999999999999988888889999999999999
Q ss_pred CccccccCCccccCCCCCcEEeccCCccCccCCCCCCCcCCCceEecCCCccccccCc-ccccccccceEEEcCCCcccc
Q 038612 355 GNSLEGNIPSSLGNLTLLTKLALDFNNLQGNIPSSLGSCQNLMELIVSHNKLNGTLPQ-QILEIRTLSFQLDLSNNLLSG 433 (678)
Q Consensus 355 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~-~~~~~~~l~~~L~l~~n~l~~ 433 (678)
+|.+++..+..|..+++|++|++++|.+....+..|..+++|+.|++++|...+.++. .+..++.+ +.|++++|.++.
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L-~~L~L~~n~l~~ 199 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL-RYLNLAMCNLRE 199 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSC-CEEECTTSCCSS
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccccc-CeecCCCCcCcc
Confidence 9999877677788999999999999999877777888999999999998654445554 56677777 889999999885
Q ss_pred cCCccccCcccCCeeecccCcccccCCccccCCCCCCEEECcCCccccccCccccCCCCCCEEECCCCcccccCCccCCC
Q 038612 434 YLPFRVGNLKNLARLDISMNHFFGEIPATLSACTSLEYLYMQGNSFGGRIPLSLISLKSLKVLDLSRNNLSGKIPEYLEN 513 (678)
Q Consensus 434 ~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~ 513 (678)
. | .+..+++|++|+|++|++++..|..|..+++|++|+|++|++++..+..|..+++|+.|+|++|++++..+..+..
T Consensus 200 ~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 277 (440)
T 3zyj_A 200 I-P-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTP 277 (440)
T ss_dssp C-C-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSS
T ss_pred c-c-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhcc
Confidence 4 4 4788999999999999999888999999999999999999999999999999999999999999999888888999
Q ss_pred CCCCCEEeCCcCcceeeCCC
Q 038612 514 LPFLQYLDLSYNHFEGQVPA 533 (678)
Q Consensus 514 l~~L~~L~l~~n~l~~~~p~ 533 (678)
+++|+.|++++|++.+....
T Consensus 278 l~~L~~L~L~~Np~~CdC~l 297 (440)
T 3zyj_A 278 LHHLERIHLHHNPWNCNCDI 297 (440)
T ss_dssp CTTCCEEECCSSCEECSSTT
T ss_pred ccCCCEEEcCCCCccCCCCc
Confidence 99999999999999987653
No 59
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=9.5e-28 Score=248.13 Aligned_cols=257 Identities=18% Similarity=0.146 Sum_probs=160.4
Q ss_pred CCcEEEcccCCCCcccChhHhhccccCcEEEccCcceeccCCccCcCCccccccccccceeeeccCcccCCCcccceeec
Q 038612 274 KLEWLELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLIGTIPHVIGSLKNLQLLYL 353 (678)
Q Consensus 274 ~L~~L~L~~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 353 (678)
+|++|++++|.+++..+..+..++. |+.|++++|++++..+..+.++++|+.|++++|++.+..+..++.+++|++|++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVN-LQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTT-CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred cCcEEECCCCcCcccCHHHhccCCC-CCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 3444444444444333334444433 555555555555544555555556666666666555443344556666666666
Q ss_pred cCccccccCC-ccccCCCCCcEEeccCC-ccCccCCCCCCCcCCCceEecCCCccccccCcccccccccceEEEcCCCcc
Q 038612 354 YGNSLEGNIP-SSLGNLTLLTKLALDFN-NLQGNIPSSLGSCQNLMELIVSHNKLNGTLPQQILEIRTLSFQLDLSNNLL 431 (678)
Q Consensus 354 ~~n~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~L~l~~n~l 431 (678)
++|.+.+..+ ..+..+++|++|++++| .+....+..+..+++|++|++++|++.+..|..+..++.+ +.|++++|.+
T Consensus 132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L-~~L~l~~n~l 210 (353)
T 2z80_A 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNV-SHLILHMKQH 210 (353)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEE-EEEEEECSCS
T ss_pred CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccC-CeecCCCCcc
Confidence 6666653322 24556666666666666 3444445556666666666666666665555556555555 5666666666
Q ss_pred cccCCccccCcccCCeeecccCcccccCCccc---cCCCCCCEEECcCCcccc----ccCccccCCCCCCEEECCCCccc
Q 038612 432 SGYLPFRVGNLKNLARLDISMNHFFGEIPATL---SACTSLEYLYMQGNSFGG----RIPLSLISLKSLKVLDLSRNNLS 504 (678)
Q Consensus 432 ~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~---~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~ls~n~l~ 504 (678)
....+..+..+++|++|++++|.+++..+..+ ...+.++.++++++.+.+ .+|..+..+++|+.|++++|+++
T Consensus 211 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~ 290 (353)
T 2z80_A 211 ILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK 290 (353)
T ss_dssp TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC
T ss_pred ccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC
Confidence 54333334456777777777777776544433 245678888888888775 36778889999999999999999
Q ss_pred ccCCccCCCCCCCCEEeCCcCcceeeCC
Q 038612 505 GKIPEYLENLPFLQYLDLSYNHFEGQVP 532 (678)
Q Consensus 505 ~~~p~~l~~l~~L~~L~l~~n~l~~~~p 532 (678)
...+..+..+++|++|++++|++.+.+|
T Consensus 291 ~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 291 SVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 5444446899999999999999998876
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=4.9e-26 Score=227.78 Aligned_cols=254 Identities=17% Similarity=0.169 Sum_probs=193.1
Q ss_pred EEEEcCCCCCCCcccCCCCCCCCEEECCCCCCccccChhhcCCccCcEEeccCCCCccCCCccCCCCCCCCEEEccccc-
Q 038612 79 TELYLRNQSLGADIGYSSWSKLEKLSIAVNHLRGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVEENN- 157 (678)
Q Consensus 79 ~~l~l~~~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~- 157 (678)
+.++.+++.+...+ ..-.++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..|.++++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip-~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~ 92 (285)
T 1ozn_A 14 VTTSCPQQGLQAVP-VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (285)
T ss_dssp CEEECCSSCCSSCC-TTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred eEEEcCcCCcccCC-cCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence 45666666665443 2335789999999999998877889999999999999999998888889999999999999997
Q ss_pred ccccCcccccCCCCCcEEECCCCCCCccCChhhhcCCCCCCEEEcccCcCCCCCCccCcCCCCCcEEeccCCcceeccCC
Q 038612 158 FSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLIELNLGQNHFTGKVSI 237 (678)
Q Consensus 158 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~ 237 (678)
++...|..+..+++|++|++++|.+++..|..+. .+++|++|++++|.+++..+..+.++++|++|++++|++++..+.
T Consensus 93 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 171 (285)
T 1ozn_A 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR-GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER 171 (285)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhh-CCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHH
Confidence 7766688899999999999999999866666555 889999999999999877777788899999999999999877777
Q ss_pred CCCCCCCCCeEEcccCcccccCCCCcccccccCCCCCCcEEEcccCCCCcccChhHhhccccCcEEEccCcceeccCCcc
Q 038612 238 DFNGLSDLAWLSFEANNLGAEASNDLDFVFSLTNCSKLEWLELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLG 317 (678)
Q Consensus 238 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~ 317 (678)
.+..+++|++|++++|.+....+ ..+..+++|+.|++++|.+.+..+..+..++. |+.|++++|.+....+..
T Consensus 172 ~~~~l~~L~~L~l~~n~l~~~~~------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~N~~~c~~~~~ 244 (285)
T 1ozn_A 172 AFRGLHSLDRLLLHQNRVAHVHP------HAFRDLGRLMTLYLFANNLSALPTEALAPLRA-LQYLRLNDNPWVCDCRAR 244 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCEECT------TTTTTCTTCCEEECCSSCCSCCCHHHHTTCTT-CCEEECCSSCEECSGGGH
T ss_pred HhcCccccCEEECCCCcccccCH------hHccCcccccEeeCCCCcCCcCCHHHcccCcc-cCEEeccCCCccCCCCcH
Confidence 78888888888888888776543 35677788888888888887666566666665 888888887776432211
Q ss_pred CcCCccccccccccceeeeccCccc
Q 038612 318 IGNLVNLNLFSLHLNQLIGTIPHVI 342 (678)
Q Consensus 318 l~~l~~L~~L~l~~n~~~~~~~~~~ 342 (678)
.-...++.+..+.+.+....|..+
T Consensus 245 -~~~~~l~~~~~~~~~~~c~~p~~l 268 (285)
T 1ozn_A 245 -PLWAWLQKFRGSSSEVPCSLPQRL 268 (285)
T ss_dssp -HHHHHHHHCCSEECCCBEEESGGG
T ss_pred -HHHHHHHhcccccCccccCCchHh
Confidence 111223344444455544455444
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=5.1e-26 Score=243.31 Aligned_cols=228 Identities=22% Similarity=0.250 Sum_probs=125.5
Q ss_pred CCCCEEECCCCCCccccChhhcCCccCcEEeccCCCCccCCCccCCCCCCCCEEEcccccccccCcccccCCCCCcEEEC
Q 038612 98 SKLEKLSIAVNHLRGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFL 177 (678)
Q Consensus 98 ~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 177 (678)
+++++|+|++|.+.+..+..|.++++|++|++++|.+++..|..|.++++|++|+|++|.++...+..|.++++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 35555555555555555555555555555555555555555555555555555555555555444444555555555555
Q ss_pred CCCCCCccCChhhhcCCCCCCEEEcccCcCCCCCCccCcCCCCCcEEeccCC-cceeccCCCCCCCCCCCeEEcccCccc
Q 038612 178 PANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLIELNLGQN-HFTGKVSIDFNGLSDLAWLSFEANNLG 256 (678)
Q Consensus 178 ~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~ 256 (678)
++|.++ ...+..|.++++|+.|++++| .+....+..|.++++|+.|++++|.+.
T Consensus 155 ~~N~l~-------------------------~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~ 209 (452)
T 3zyi_A 155 RNNPIE-------------------------SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK 209 (452)
T ss_dssp CSCCCC-------------------------EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS
T ss_pred CCCCcc-------------------------eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc
Confidence 555444 333334444555555555442 222222223444444444444444443
Q ss_pred ccCCCCcccccccCCCCCCcEEEcccCCCCcccChhHhhccccCcEEEccCcceeccCCccCcCCccccccccccceeee
Q 038612 257 AEASNDLDFVFSLTNCSKLEWLELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLIG 336 (678)
Q Consensus 257 ~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 336 (678)
... .+..+++|++|+|++|.+ ++..|..+..+++|+.|++++|++.+
T Consensus 210 ~~~--------~~~~l~~L~~L~Ls~N~l-------------------------~~~~~~~~~~l~~L~~L~L~~n~l~~ 256 (452)
T 3zyi_A 210 DMP--------NLTPLVGLEELEMSGNHF-------------------------PEIRPGSFHGLSSLKKLWVMNSQVSL 256 (452)
T ss_dssp SCC--------CCTTCTTCCEEECTTSCC-------------------------SEECGGGGTTCTTCCEEECTTSCCCE
T ss_pred ccc--------cccccccccEEECcCCcC-------------------------cccCcccccCccCCCEEEeCCCcCce
Confidence 221 233444445555444444 44444455555666666666666666
Q ss_pred ccCcccCCCcccceeeccCccccccCCccccCCCCCcEEeccCCccC
Q 038612 337 TIPHVIGSLKNLQLLYLYGNSLEGNIPSSLGNLTLLTKLALDFNNLQ 383 (678)
Q Consensus 337 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 383 (678)
..+..|..+++|++|+|++|++++..+..+..+++|++|++++|.+.
T Consensus 257 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 257 IERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred ECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 66666777777777777777777666666777778888888877665
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=6.7e-26 Score=241.50 Aligned_cols=227 Identities=22% Similarity=0.263 Sum_probs=124.7
Q ss_pred cCcEEeccCCCCccCCCccCCCCCCCCEEEcccccccccCcccccCCCCCcEEECCCCCCCccCChhhhcCCCCCCEEEc
Q 038612 123 ALQAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIV 202 (678)
Q Consensus 123 ~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l 202 (678)
++++|+|++|.+.+..+..|.++++|++|+|++|.++...+..|.++++|++|+|++|.++. +|...+..+++|++|++
T Consensus 65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTT-IPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSS-CCTTTSCSCSSCCEEEC
T ss_pred CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCe-eCHhHhhccccCceeeC
Confidence 34444444444444444444444444444444444444444444444444444444444442 22222224455555555
Q ss_pred ccCcCCCCCCccCcCCCCCcEEeccCCc-ceeccCCCCCCCCCCCeEEcccCcccccCCCCcccccccCCCCCCcEEEcc
Q 038612 203 AQNNLTGPIPHSLSNASNLIELNLGQNH-FTGKVSIDFNGLSDLAWLSFEANNLGAEASNDLDFVFSLTNCSKLEWLELR 281 (678)
Q Consensus 203 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~ 281 (678)
++|.++...+..|.++++|++|++++|+ +....+..|.++++|++|++++|.+.... .+..+++
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--------~~~~l~~------- 208 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP--------NLTPLIK------- 208 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC--------CCTTCSS-------
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc--------ccCCCcc-------
Confidence 5555544444455555555555555532 22222334444444444444444443211 1233333
Q ss_pred cCCCCcccChhHhhccccCcEEEccCcceeccCCccCcCCccccccccccceeeeccCcccCCCcccceeeccCcccccc
Q 038612 282 KNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLIGTIPHVIGSLKNLQLLYLYGNSLEGN 361 (678)
Q Consensus 282 ~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 361 (678)
|+.|++++|.+++..|..+..+++|+.|++++|++.+..+..|..+++|++|+|++|++++.
T Consensus 209 ------------------L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 270 (440)
T 3zyj_A 209 ------------------LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLL 270 (440)
T ss_dssp ------------------CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCC
T ss_pred ------------------cCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCcc
Confidence 55555555555555566666677777777777777777777777888888888888888876
Q ss_pred CCccccCCCCCcEEeccCCccC
Q 038612 362 IPSSLGNLTLLTKLALDFNNLQ 383 (678)
Q Consensus 362 ~~~~~~~l~~L~~L~L~~n~l~ 383 (678)
.+..+..+++|++|++++|.+.
T Consensus 271 ~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 271 PHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CTTTTSSCTTCCEEECCSSCEE
T ss_pred ChhHhccccCCCEEEcCCCCcc
Confidence 6677778888888888888765
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=4.2e-28 Score=245.93 Aligned_cols=248 Identities=23% Similarity=0.214 Sum_probs=194.7
Q ss_pred CCCCCCcEEEcccCCCCcccChhHhhccccCcEEEccCccee-ccCCccCc-------CCccccccccccceeeeccCcc
Q 038612 270 TNCSKLEWLELRKNQFGGNLPHFIANLSKTMTIIDMGENKLS-GTIPLGIG-------NLVNLNLFSLHLNQLIGTIPHV 341 (678)
Q Consensus 270 ~~~~~L~~L~L~~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~-~~~~~~l~-------~l~~L~~L~l~~n~~~~~~~~~ 341 (678)
+..++|+.|++++|.+ .+|..+... ++.|++++|.+. ..+|..+. ++++|+.|++++|++.+.+|..
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 3445677788888887 667665554 788888888884 44555554 6888999999999988888876
Q ss_pred c--CCCcccceeeccCccccccCCccccCC-----CCCcEEeccCCccCccCCCCCCCcCCCceEecCCCccccc--cCc
Q 038612 342 I--GSLKNLQLLYLYGNSLEGNIPSSLGNL-----TLLTKLALDFNNLQGNIPSSLGSCQNLMELIVSHNKLNGT--LPQ 412 (678)
Q Consensus 342 ~--~~l~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~p~ 412 (678)
+ ..+++|++|++++|.+++. |..++.+ ++|++|++++|++.+..|..+..+++|++|++++|++.+. .|.
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence 5 8889999999999998876 7767666 8899999999999888878888999999999999987654 233
Q ss_pred cc--ccccccceEEEcCCCccccc---CCccccCcccCCeeecccCcccccCC-ccccCCCCCCEEECcCCccccccCcc
Q 038612 413 QI--LEIRTLSFQLDLSNNLLSGY---LPFRVGNLKNLARLDISMNHFFGEIP-ATLSACTSLEYLYMQGNSFGGRIPLS 486 (678)
Q Consensus 413 ~~--~~~~~l~~~L~l~~n~l~~~---~~~~~~~l~~L~~L~Ls~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~ 486 (678)
.+ ..++.+ +.|++++|.+++. ....+..+++|++|++++|++++..| ..+..+++|++|+|++|+++ .+|..
T Consensus 194 ~~~~~~l~~L-~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~ 271 (312)
T 1wwl_A 194 ALCPLKFPTL-QVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKG 271 (312)
T ss_dssp HSCTTSCTTC-CEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSS
T ss_pred HHHhccCCCC-CEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhh
Confidence 33 566777 7888998888732 22344577899999999999987664 45667889999999999988 66666
Q ss_pred ccCCCCCCEEECCCCcccccCCccCCCCCCCCEEeCCcCccee
Q 038612 487 LISLKSLKVLDLSRNNLSGKIPEYLENLPFLQYLDLSYNHFEG 529 (678)
Q Consensus 487 ~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~ 529 (678)
+. ++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus 272 ~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 272 LP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred cc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 65 7899999999999866 65 8889999999999998864
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=9.3e-28 Score=243.35 Aligned_cols=249 Identities=20% Similarity=0.222 Sum_probs=150.0
Q ss_pred CCCCCCEEECCCCCCccccChhhcCCccCcEEeccCCCCc-cCCCccCC-------CCCCCCEEEcccccccccCcccc-
Q 038612 96 SWSKLEKLSIAVNHLRGQLPASIGNLSALQAFDVGENTLH-GRIPESLG-------QLRSLKFLNVEENNFSGMVPVSI- 166 (678)
Q Consensus 96 ~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ls~n~l~-~~~p~~~~-------~l~~L~~L~L~~n~l~~~~~~~~- 166 (678)
..++|+.|++++|.+ .+|..+... |++|++++|.+. ..+|..+. ++++|++|+|++|.+++..|..+
T Consensus 41 ~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred cCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 345677777777777 567666544 777888887773 44555544 67788888888888877777765
Q ss_pred -cCCCCCcEEECCCCCCCccCChhhhcCC-----CCCCEEEcccCcCCCCCCccCcCCCCCcEEeccCCcceeccC--CC
Q 038612 167 -YNISSLEMIFLPANRLEGILPLNIGFNL-----PNLKSLIVAQNNLTGPIPHSLSNASNLIELNLGQNHFTGKVS--ID 238 (678)
Q Consensus 167 -~~l~~L~~L~l~~n~~~~~~p~~~~~~l-----~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~ 238 (678)
..+++|++|++++|.+++. |..+. .+ ++|++|++++|++++..|..++++++|++|++++|++.+..+ ..
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~-~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATR-DAWLA-ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSS-SSHHH-HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred HhcCCCccEEEccCCCCcch-hHHHH-HHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence 7777888888888877765 65554 34 677777777777776666677777777777777776554311 11
Q ss_pred CCCCCCCCeEEcccCcccccCCCCcccccccCCCCCCcEEEcccCCCCc--ccChhH-hhccccCcEEEccCcceeccCC
Q 038612 239 FNGLSDLAWLSFEANNLGAEASNDLDFVFSLTNCSKLEWLELRKNQFGG--NLPHFI-ANLSKTMTIIDMGENKLSGTIP 315 (678)
Q Consensus 239 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~--~~p~~~-~~~~~~L~~L~L~~n~l~~~~~ 315 (678)
+ .+..+++|++|++++|.+.+ .++..+ ..++ +|+.|++++|++++..|
T Consensus 195 ~----------------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~ 245 (312)
T 1wwl_A 195 L----------------------------CPLKFPTLQVLALRNAGMETPSGVCSALAAARV-QLQGLDLSHNSLRDAAG 245 (312)
T ss_dssp S----------------------------CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC-CCSEEECTTSCCCSSCC
T ss_pred H----------------------------HhccCCCCCEEECCCCcCcchHHHHHHHHhcCC-CCCEEECCCCcCCcccc
Confidence 1 12455666777777776652 122222 2223 36666666666665443
Q ss_pred ccCcCCccccccccccceeeeccCcccCCCcccceeeccCccccccCCccccCCCCCcEEeccCCccCccCCCCCCCcCC
Q 038612 316 LGIGNLVNLNLFSLHLNQLIGTIPHVIGSLKNLQLLYLYGNSLEGNIPSSLGNLTLLTKLALDFNNLQGNIPSSLGSCQN 395 (678)
Q Consensus 316 ~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 395 (678)
. ..+..+++|++|++++|.++ .+|..+. ++|++|++++|++++. |. +..+++
T Consensus 246 ~-----------------------~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~ 297 (312)
T 1wwl_A 246 A-----------------------PSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQ 297 (312)
T ss_dssp C-----------------------SCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCE
T ss_pred h-----------------------hhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCC
Confidence 1 12233445555555555554 3444443 5555555555555543 33 555555
Q ss_pred CceEecCCCccc
Q 038612 396 LMELIVSHNKLN 407 (678)
Q Consensus 396 L~~L~l~~n~l~ 407 (678)
|++|++++|+++
T Consensus 298 L~~L~L~~N~l~ 309 (312)
T 1wwl_A 298 VGNLSLKGNPFL 309 (312)
T ss_dssp EEEEECTTCTTT
T ss_pred CCEEeccCCCCC
Confidence 666666666554
No 65
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=3.9e-26 Score=250.15 Aligned_cols=291 Identities=24% Similarity=0.261 Sum_probs=167.0
Q ss_pred CCCCCCCCCCCCCCccccc--------ccCCCCcEEEEEcCCCCCCCcccCCCCCCCCEEECCCCCCccccChhhcCCcc
Q 038612 52 EVTSSWDTSVNLCQWTGVT--------CGRRHQRVTELYLRNQSLGADIGYSSWSKLEKLSIAVNHLRGQLPASIGNLSA 123 (678)
Q Consensus 52 ~~~~~w~~~~~~c~w~gv~--------c~~~~~~v~~l~l~~~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~ 123 (678)
.+..+|....++|.|.+.. |. ...++.++++++.+...+.-. .++|++|++++|.++ .+|. .+++
T Consensus 10 ~~w~~W~~~~~~~~~~~r~~~~~~~~~c~--~~~l~~L~ls~n~L~~lp~~l-~~~L~~L~L~~N~l~-~lp~---~l~~ 82 (622)
T 3g06_A 10 AVWSAWRRAAPAEESRGRAAVVQKMRACL--NNGNAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLT-SLPA---LPPE 82 (622)
T ss_dssp CHHHHHHHTCCGGGHHHHHHHHHHHHHHH--HHCCCEEECCSSCCSCCCSCC-CTTCSEEEECSCCCS-CCCC---CCTT
T ss_pred HHHHHHHhcCCcchhccccccCccccccc--CCCCcEEEecCCCcCccChhh-CCCCcEEEecCCCCC-CCCC---cCCC
Confidence 3456787778899996643 32 123555555555554322111 144555555555544 2222 3444
Q ss_pred CcEEeccCCCCccCCCccCCCCCCCCEEEcccccccccCcccccCCCCCcEEECCCCCCCccCChhhhcCCCCCCEEEcc
Q 038612 124 LQAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVA 203 (678)
Q Consensus 124 L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~ 203 (678)
|++|++++|.++ .+|. .+++|++|++++|.+++ +|. .+++|++|++++|++++ +|. .+
T Consensus 83 L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~----~l--------- 140 (622)
T 3g06_A 83 LRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPV----LP--------- 140 (622)
T ss_dssp CCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCC----CC---------
T ss_pred CCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCC----CC---------
Confidence 555555555544 2332 34445555555554442 222 33444444444444442 332 12
Q ss_pred cCcCCCCCCccCcCCCCCcEEeccCCcceeccCCCCCCCCCCCeEEcccCcccccCCCCcccccccCCCCCCcEEEcccC
Q 038612 204 QNNLTGPIPHSLSNASNLIELNLGQNHFTGKVSIDFNGLSDLAWLSFEANNLGAEASNDLDFVFSLTNCSKLEWLELRKN 283 (678)
Q Consensus 204 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n 283 (678)
++|++|++++|++++. |. .+++|+.|++++|.+.... ..+++|+.|++++|
T Consensus 141 ---------------~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~l~----------~~~~~L~~L~Ls~N 191 (622)
T 3g06_A 141 ---------------PGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTSLP----------MLPSGLQELSVSDN 191 (622)
T ss_dssp ---------------TTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSCCC----------CCCTTCCEEECCSS
T ss_pred ---------------CCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCCCc----------ccCCCCcEEECCCC
Confidence 4455555555544432 11 2234555555555444321 22355666666666
Q ss_pred CCCcccChhHhhccccCcEEEccCcceeccCCccCcCCccccccccccceeeeccCcccCCCcccceeeccCccccccCC
Q 038612 284 QFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLIGTIPHVIGSLKNLQLLYLYGNSLEGNIP 363 (678)
Q Consensus 284 ~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 363 (678)
.+.+ +|.. ..+|+.|++++|.++. +|. .+++|+.|++++|++.+ +| ..+++|++|++++|.++. +|
T Consensus 192 ~l~~-l~~~----~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp 257 (622)
T 3g06_A 192 QLAS-LPTL----PSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LP 257 (622)
T ss_dssp CCSC-CCCC----CTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CC
T ss_pred CCCC-CCCc----cchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CC
Confidence 6653 3321 2347777777777663 332 23677888888887775 34 456789999999998884 55
Q ss_pred ccccCCCCCcEEeccCCccCccCCCCCCCcCCCceEecCCCccccccCccccccc
Q 038612 364 SSLGNLTLLTKLALDFNNLQGNIPSSLGSCQNLMELIVSHNKLNGTLPQQILEIR 418 (678)
Q Consensus 364 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~ 418 (678)
. .+++|++|++++|+++ .+|..+.++++|+.|++++|++.+..|..+..++
T Consensus 258 ~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 258 M---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp C---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred c---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 4 5688999999999998 6788899999999999999999888887766554
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=2.7e-27 Score=240.55 Aligned_cols=257 Identities=18% Similarity=0.184 Sum_probs=144.7
Q ss_pred CCEEECCCCCCccccChhhcCCccCcEEeccCCCCccCCCccCCCCCCCCEEEcccccccccCcccccCCCCCcEEECCC
Q 038612 100 LEKLSIAVNHLRGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFLPA 179 (678)
Q Consensus 100 L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 179 (678)
++.++++.+.+.......+..+++|++|++++|.+++..|..|.++++|++|+|++|.+++..+ +..+++|++|++++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~ 89 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNN 89 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCS
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcC
Confidence 4455566666654444555566677777777777776666677777777777777777765443 66777777777777
Q ss_pred CCCCccCChhhhcCCCCCCEEEcccCcCCCCCCccCcCCCCCcEEeccCCcceeccCCCCCCCCCCCeEEcccCcccccC
Q 038612 180 NRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLIELNLGQNHFTGKVSIDFNGLSDLAWLSFEANNLGAEA 259 (678)
Q Consensus 180 n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 259 (678)
|.+++. + ..++|++|++++|.+++..+. .+++|++|++++|++++..+..+..++
T Consensus 90 n~l~~l-~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~---------------- 144 (317)
T 3o53_A 90 NYVQEL-L-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRS---------------- 144 (317)
T ss_dssp SEEEEE-E-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGS----------------
T ss_pred Cccccc-c-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccC----------------
Confidence 766632 2 236667777776666644332 245566666666666554444444333
Q ss_pred CCCcccccccCCCCCCcEEEcccCCCCcccChhHh-hccccCcEEEccCcceeccCCccCcCCccccccccccceeeecc
Q 038612 260 SNDLDFVFSLTNCSKLEWLELRKNQFGGNLPHFIA-NLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLIGTI 338 (678)
Q Consensus 260 ~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~-~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~ 338 (678)
+|++|++++|.+.+..+..+. .++ +|++|++++|.+++.. ....+++|+.|++++|++.+..
T Consensus 145 --------------~L~~L~Ls~N~l~~~~~~~~~~~l~-~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~l~ 207 (317)
T 3o53_A 145 --------------RVQYLDLKLNEIDTVNFAELAASSD-TLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMG 207 (317)
T ss_dssp --------------SEEEEECTTSCCCEEEGGGGGGGTT-TCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEEC
T ss_pred --------------CCCEEECCCCCCCcccHHHHhhccC-cCCEEECCCCcCcccc--cccccccCCEEECCCCcCCcch
Confidence 444444444444433333332 222 2555555555554331 1223555555555555555432
Q ss_pred CcccCCCcccceeeccCccccccCCccccCCCCCcEEeccCCccC-ccCCCCCCCcCCCceEecC
Q 038612 339 PHVIGSLKNLQLLYLYGNSLEGNIPSSLGNLTLLTKLALDFNNLQ-GNIPSSLGSCQNLMELIVS 402 (678)
Q Consensus 339 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~ 402 (678)
..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+. +.++..+..+++|+.++++
T Consensus 208 -~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 208 -PEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp -GGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred -hhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 23555566666666666655 24445555566666666666555 4444555555555555555
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=2.2e-26 Score=247.34 Aligned_cols=214 Identities=21% Similarity=0.178 Sum_probs=127.9
Q ss_pred CcEEEccCcceeccCCccCcCCccccccccccceeeeccCcccCCCcccceeeccCccccccCCccccCCCCCcEEeccC
Q 038612 300 MTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLIGTIPHVIGSLKNLQLLYLYGNSLEGNIPSSLGNLTLLTKLALDF 379 (678)
Q Consensus 300 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 379 (678)
|+.|++++|.+++..|..+..+++|+.|++++|.+.+..| +..+++|++|++++|.+++..+ .++|++|++++
T Consensus 36 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~~ 108 (487)
T 3oja_A 36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHAAN 108 (487)
T ss_dssp CCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEECCS
T ss_pred ccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEECcC
Confidence 5555555555555444555555555555555555554443 5556666666666665553221 25566666666
Q ss_pred CccCccCCCCCCCcCCCceEecCCCccccccCcccccccccceEEEcCCCcccccCCcccc-CcccCCeeecccCccccc
Q 038612 380 NNLQGNIPSSLGSCQNLMELIVSHNKLNGTLPQQILEIRTLSFQLDLSNNLLSGYLPFRVG-NLKNLARLDISMNHFFGE 458 (678)
Q Consensus 380 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~~~~~ 458 (678)
|.+.+..+.. +++|+.|++++|.+.+..|..+..++.+ +.|++++|.+++..|..+. .+++|++|+|++|.+++.
T Consensus 109 N~l~~~~~~~---l~~L~~L~L~~N~l~~~~~~~~~~l~~L-~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 109 NNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRV-QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp SCCCCEEECC---CSSCEEEECCSSCCCSGGGBCGGGGSSE-EEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CcCCCCCccc---cCCCCEEECCCCCCCCCCchhhcCCCCC-CEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 6665544332 3556666666666665555555555555 5666666666665555554 566777777777776644
Q ss_pred CCccccCCCCCCEEECcCCccccccCccccCCCCCCEEECCCCcccccCCccCCCCCCCCEEeCCcCcce
Q 038612 459 IPATLSACTSLEYLYMQGNSFGGRIPLSLISLKSLKVLDLSRNNLSGKIPEYLENLPFLQYLDLSYNHFE 528 (678)
Q Consensus 459 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 528 (678)
.+ +..+++|++|+|++|.+++..| .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++.
T Consensus 185 ~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 185 KG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp EC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred cc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence 22 3346677777777777765433 36666777777777777774 5556666777777777777766
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=1.7e-26 Score=234.69 Aligned_cols=237 Identities=16% Similarity=0.171 Sum_probs=115.8
Q ss_pred CCCCCcEEEcccCCCCcccChhHhhccccCcEEEccCcceeccCCccCcCCccccccccccceeeeccCcccCCCcccce
Q 038612 271 NCSKLEWLELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLIGTIPHVIGSLKNLQL 350 (678)
Q Consensus 271 ~~~~L~~L~L~~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 350 (678)
.+++|++|++++|.+.+..|..+..++. |+.|++++|.+++..+ +..+++|+.|++++|++.+.. ..++|++
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~ 103 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTK-LELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIET 103 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTT-CCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCc-CCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCE
Confidence 3445555555555555554455555543 5555555555554433 555555555555555554322 2245555
Q ss_pred eeccCccccccCCccccCCCCCcEEeccCCccCccCCCCCCCcCCCceEecCCCccccccCcccc-cccccceEEEcCCC
Q 038612 351 LYLYGNSLEGNIPSSLGNLTLLTKLALDFNNLQGNIPSSLGSCQNLMELIVSHNKLNGTLPQQIL-EIRTLSFQLDLSNN 429 (678)
Q Consensus 351 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~-~~~~l~~~L~l~~n 429 (678)
|++++|.+.+..+. .+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+. .++.+ +.|++++|
T Consensus 104 L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L-~~L~L~~N 179 (317)
T 3o53_A 104 LHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL-EHLNLQYN 179 (317)
T ss_dssp EECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC-CEEECTTS
T ss_pred EECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcC-CEEECCCC
Confidence 55555555543322 234555555555555554444555555555555555555543333332 23333 44555555
Q ss_pred cccccCCccccCcccCCeeecccCcccccCCccccCCCCCCEEECcCCccccccCccccCCCCCCEEECCCCccc-ccCC
Q 038612 430 LLSGYLPFRVGNLKNLARLDISMNHFFGEIPATLSACTSLEYLYMQGNSFGGRIPLSLISLKSLKVLDLSRNNLS-GKIP 508 (678)
Q Consensus 430 ~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~-~~~p 508 (678)
.+++..+ ...+++|++|+|++|++++ +|..+..+++|++|++++|+++ .+|..+..+++|+.|++++|.+. +.+|
T Consensus 180 ~l~~~~~--~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~ 255 (317)
T 3o53_A 180 FIYDVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLR 255 (317)
T ss_dssp CCCEEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHH
T ss_pred cCccccc--ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHH
Confidence 5443311 1224445555555555442 2222444455555555555444 23344444445555555555544 3444
Q ss_pred ccCCCCCCCCEEeCC
Q 038612 509 EYLENLPFLQYLDLS 523 (678)
Q Consensus 509 ~~l~~l~~L~~L~l~ 523 (678)
..+..++.|+.++++
T Consensus 256 ~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 256 DFFSKNQRVQTVAKQ 270 (317)
T ss_dssp HHHHTCHHHHHHHHH
T ss_pred HHHhccccceEEECC
Confidence 444444444444444
No 69
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=2e-24 Score=236.57 Aligned_cols=269 Identities=26% Similarity=0.324 Sum_probs=211.5
Q ss_pred ccCcEEeccCCCCccCCCccCCCCCCCCEEEcccccccccCcccccCCCCCcEEECCCCCCCccCChhhhcCCCCCCEEE
Q 038612 122 SALQAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLI 201 (678)
Q Consensus 122 ~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~ 201 (678)
.++++|++++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|+++ .+|. .+++|++|+
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV----LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC----CCTTCCEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC----CCCCCCEEE
Confidence 35777777777776 5666554 67888888888777 4444 5677888888888877 4555 568888888
Q ss_pred cccCcCCCCCCccCcCCCCCcEEeccCCcceeccCCCCCCCCCCCeEEcccCcccccCCCCcccccccCCCCCCcEEEcc
Q 038612 202 VAQNNLTGPIPHSLSNASNLIELNLGQNHFTGKVSIDFNGLSDLAWLSFEANNLGAEASNDLDFVFSLTNCSKLEWLELR 281 (678)
Q Consensus 202 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~ 281 (678)
+++|.+++ +|. .+++|+.|++++|++++. |. .+++|++|++++|.+..... ..++|+.|+++
T Consensus 108 Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~~l~~----------~~~~L~~L~L~ 169 (622)
T 3g06_A 108 IFSNPLTH-LPA---LPSGLCKLWIFGNQLTSL-PV---LPPGLQELSVSDNQLASLPA----------LPSELCKLWAY 169 (622)
T ss_dssp ECSCCCCC-CCC---CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSCCCC----------CCTTCCEEECC
T ss_pred CcCCcCCC-CCC---CCCCcCEEECCCCCCCcC-CC---CCCCCCEEECcCCcCCCcCC----------ccCCCCEEECC
Confidence 88888875 343 568899999999998763 33 25899999999999876431 34689999999
Q ss_pred cCCCCcccChhHhhccccCcEEEccCcceeccCCccCcCCccccccccccceeeeccCcccCCCcccceeeccCcccccc
Q 038612 282 KNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLIGTIPHVIGSLKNLQLLYLYGNSLEGN 361 (678)
Q Consensus 282 ~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 361 (678)
+|.+++ +| ....+|+.|++++|.+++ +|.. +++|+.|++++|.+.. +|. .+++|++|++++|.+++
T Consensus 170 ~N~l~~-l~----~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~- 235 (622)
T 3g06_A 170 NNQLTS-LP----MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTS- 235 (622)
T ss_dssp SSCCSC-CC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSC-
T ss_pred CCCCCC-Cc----ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCc-
Confidence 999984 55 233469999999999985 4432 4789999999999874 443 35899999999999986
Q ss_pred CCccccCCCCCcEEeccCCccCccCCCCCCCcCCCceEecCCCccccccCcccccccccceEEEcCCCcccccCCccccC
Q 038612 362 IPSSLGNLTLLTKLALDFNNLQGNIPSSLGSCQNLMELIVSHNKLNGTLPQQILEIRTLSFQLDLSNNLLSGYLPFRVGN 441 (678)
Q Consensus 362 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~ 441 (678)
+| ..+++|++|++++|.++. +|. .+++|+.|++++|++. .+|..+..++.+ +.|++++|.+++..|..+..
T Consensus 236 lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L-~~L~L~~N~l~~~~~~~l~~ 306 (622)
T 3g06_A 236 LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSE-TTVNLEGNPLSERTLQALRE 306 (622)
T ss_dssp CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTT-CEEECCSCCCCHHHHHHHHH
T ss_pred CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhcccc-CEEEecCCCCCCcCHHHHHh
Confidence 55 466899999999999984 555 5789999999999999 889999999998 89999999999888876665
Q ss_pred cc
Q 038612 442 LK 443 (678)
Q Consensus 442 l~ 443 (678)
++
T Consensus 307 L~ 308 (622)
T 3g06_A 307 IT 308 (622)
T ss_dssp HH
T ss_pred cc
Confidence 54
No 70
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=8.1e-29 Score=275.49 Aligned_cols=433 Identities=14% Similarity=0.139 Sum_probs=236.5
Q ss_pred CCCcccccccCCCCcEEEEEcCCCCCCC-cccCCCCCCCCEEECCCCCCccc---cC------------hhhcCCccCcE
Q 038612 63 LCQWTGVTCGRRHQRVTELYLRNQSLGA-DIGYSSWSKLEKLSIAVNHLRGQ---LP------------ASIGNLSALQA 126 (678)
Q Consensus 63 ~c~w~gv~c~~~~~~v~~l~l~~~~l~~-~~~~~~l~~L~~L~Ls~n~~~~~---~~------------~~l~~l~~L~~ 126 (678)
|++|.++... ..+.+++....... ...+.++++|++|+++++..... .| .....+++|++
T Consensus 34 ck~W~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~ 109 (594)
T 2p1m_B 34 CKSWYEIERW----CRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEE 109 (594)
T ss_dssp CHHHHHHHHH----HCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCE
T ss_pred HHHHHHhhhh----hceEEeeccccccCHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCe
Confidence 4578777321 22344554432211 12345678899999988753211 11 12346788999
Q ss_pred EeccCCCCccCCCccCC-CCCCCCEEEcccc-ccccc-CcccccCCCCCcEEECCCCCCCccCChhh---hcCCCCCCEE
Q 038612 127 FDVGENTLHGRIPESLG-QLRSLKFLNVEEN-NFSGM-VPVSIYNISSLEMIFLPANRLEGILPLNI---GFNLPNLKSL 200 (678)
Q Consensus 127 L~ls~n~l~~~~p~~~~-~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~p~~~---~~~l~~L~~L 200 (678)
|++++|.+++..+..+. .+++|++|+|++| .++.. ++..+.++++|++|++++|.+++..+..+ ...+++|++|
T Consensus 110 L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L 189 (594)
T 2p1m_B 110 IRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSL 189 (594)
T ss_dssp EEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEE
T ss_pred EEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEE
Confidence 99999888766666665 6789999999888 45432 44445578899999999988765444333 2356789999
Q ss_pred EcccCc--CCC-CCCccCcCCCCCcEEeccCCcceeccCCCCCCCCCCCeEEcccCcccccCCCCcccccccCCCCCCcE
Q 038612 201 IVAQNN--LTG-PIPHSLSNASNLIELNLGQNHFTGKVSIDFNGLSDLAWLSFEANNLGAEASNDLDFVFSLTNCSKLEW 277 (678)
Q Consensus 201 ~l~~n~--l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~ 277 (678)
++++|. ++. .++..+.++++|++|++++|...+.++..+..+++|+.|++..+........-..++..+.++++|+.
T Consensus 190 ~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~ 269 (594)
T 2p1m_B 190 NISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRC 269 (594)
T ss_dssp ECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCE
T ss_pred EecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCccc
Confidence 998886 221 11122345688999999888433335666777888888886654321000000012235677888888
Q ss_pred E-EcccCCCCcccChhHhhccccCcEEEccCcceeccCC-ccCcCCccccccccccceeeec-cCcccCCCcccceeecc
Q 038612 278 L-ELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIP-LGIGNLVNLNLFSLHLNQLIGT-IPHVIGSLKNLQLLYLY 354 (678)
Q Consensus 278 L-~L~~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~ 354 (678)
+ .+.+.. .+.++..+..++. |+.|++++|.+++... ..+..+++|+.|++++| +.+. ++.....+++|++|++.
T Consensus 270 Ls~~~~~~-~~~l~~~~~~~~~-L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~ 346 (594)
T 2p1m_B 270 LSGFWDAV-PAYLPAVYSVCSR-LTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVF 346 (594)
T ss_dssp EECCBTCC-GGGGGGGHHHHTT-CCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEE
T ss_pred ccCCcccc-hhhHHHHHHhhCC-CCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEe
Confidence 8 343322 2345555555554 8888888887664322 22456777888887776 3222 22222346777777773
Q ss_pred C---------ccccccCCccc-cCCCCCcEEeccCCccCccCCCCCC-CcCCCceEecC--C----Ccccc-----ccCc
Q 038612 355 G---------NSLEGNIPSSL-GNLTLLTKLALDFNNLQGNIPSSLG-SCQNLMELIVS--H----NKLNG-----TLPQ 412 (678)
Q Consensus 355 ~---------n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~--~----n~l~~-----~~p~ 412 (678)
+ +.+++.....+ ..+++|++|.+..|.+++..+..+. .+++|+.|+++ + +.+++ .++.
T Consensus 347 ~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~ 426 (594)
T 2p1m_B 347 PSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGA 426 (594)
T ss_dssp CSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHH
T ss_pred cCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHH
Confidence 3 33333222222 2367777777766666654333332 35677777776 2 23331 0111
Q ss_pred ccccccccceEEEcCCCcccccCCccccC-cccCCeeecccCcccccCCccc-cCCCCCCEEECcCCccccccCc-cccC
Q 038612 413 QILEIRTLSFQLDLSNNLLSGYLPFRVGN-LKNLARLDISMNHFFGEIPATL-SACTSLEYLYMQGNSFGGRIPL-SLIS 489 (678)
Q Consensus 413 ~~~~~~~l~~~L~l~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~-~~~~ 489 (678)
.+..++.+ +.|++++ .+++..+..+.. +++|++|+|++|.+++..+..+ ..+++|++|+|++|.+++.... ....
T Consensus 427 l~~~~~~L-~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~ 504 (594)
T 2p1m_B 427 IVEHCKDL-RRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASK 504 (594)
T ss_dssp HHHHCTTC-CEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGG
T ss_pred HHhhCCCc-cEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHh
Confidence 12233344 4455544 333322222222 4455555555555443333322 3345555555555555332221 2223
Q ss_pred CCCCCEEECCCCccc
Q 038612 490 LKSLKVLDLSRNNLS 504 (678)
Q Consensus 490 l~~L~~L~ls~n~l~ 504 (678)
+++|+.|++++|+++
T Consensus 505 l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 505 LETMRSLWMSSCSVS 519 (594)
T ss_dssp GGGSSEEEEESSCCB
T ss_pred CCCCCEEeeeCCCCC
Confidence 445555555555543
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=2.6e-24 Score=213.13 Aligned_cols=219 Identities=21% Similarity=0.270 Sum_probs=170.3
Q ss_pred CCCCCcccccccCCCCcEEEEEcCCCCCCCcccCCCCCCCCEEECCCCCCccccChhhcCCccCcEEeccCCCCccCCCc
Q 038612 61 VNLCQWTGVTCGRRHQRVTELYLRNQSLGADIGYSSWSKLEKLSIAVNHLRGQLPASIGNLSALQAFDVGENTLHGRIPE 140 (678)
Q Consensus 61 ~~~c~w~gv~c~~~~~~v~~l~l~~~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~ 140 (678)
.++|.|.|+.|.- ...++.++++++.++..+. .-.+.+++|++++|.+.+..+..|.++++|++|++++|.++...+.
T Consensus 2 ~~~C~~~~~~C~c-~~~~~~l~~~~~~l~~ip~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~ 79 (270)
T 2o6q_A 2 EALCKKDGGVCSC-NNNKNSVDCSSKKLTAIPS-NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAG 79 (270)
T ss_dssp CCCBGGGTCSBEE-ETTTTEEECTTSCCSSCCS-CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTT
T ss_pred CccCCCCCCCCEe-CCCCCEEEccCCCCCccCC-CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChh
Confidence 4789999999853 2456678888888876432 1236789999999988877777888889999999999888866556
Q ss_pred cCCCCCCCCEEEcccccccccCcccccCCCCCcEEECCCCCCCccCChhhhcCCCCCCEEEcccCcCCCCCCccCcCCCC
Q 038612 141 SLGQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASN 220 (678)
Q Consensus 141 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~ 220 (678)
.|.++++|++|++++|.++...+..+..+++|++|++++|.+++..+..+. .+++|++|++++|.+++..+..|..+++
T Consensus 80 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 158 (270)
T 2o6q_A 80 IFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFD-SLTKLTYLSLGYNELQSLPKGVFDKLTS 158 (270)
T ss_dssp TTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhC-cCcCCCEEECCCCcCCccCHhHccCCcc
Confidence 678888999999999988877777788888899999998888855554444 7888888888888888766666888888
Q ss_pred CcEEeccCCcceeccCCCCCCCCCCCeEEcccCcccccCCCCcccccccCCCCCCcEEEcccCCCCcc
Q 038612 221 LIELNLGQNHFTGKVSIDFNGLSDLAWLSFEANNLGAEASNDLDFVFSLTNCSKLEWLELRKNQFGGN 288 (678)
Q Consensus 221 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~ 288 (678)
|++|++++|++++..+..|..+++|++|++++|.+...... .+..+++|+.|++++|.+...
T Consensus 159 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~------~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 159 LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEG------AFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTT------TTTTCTTCCEEECCSSCBCCS
T ss_pred cceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHH------HhccccCCCEEEecCCCeeCC
Confidence 88888888888877777788888888888888877754432 356677788888887776543
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=1.4e-25 Score=241.12 Aligned_cols=262 Identities=17% Similarity=0.160 Sum_probs=216.9
Q ss_pred CeEEcccCcccccCCCCccccccc----CCCCCCcEEEcccCCCCcccChhHhhccccCcEEEccCcceeccCCccCcCC
Q 038612 246 AWLSFEANNLGAEASNDLDFVFSL----TNCSKLEWLELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNL 321 (678)
Q Consensus 246 ~~L~l~~n~l~~~~~~~~~~~~~l----~~~~~L~~L~L~~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l 321 (678)
..+.+.++...........++..+ ..+++|++|+|++|.+.+..|..+..++. |+.|+|++|.+++..| +..+
T Consensus 3 ~~l~~ng~~~~~~~~~~~~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~Ls~N~l~~~~~--l~~l 79 (487)
T 3oja_A 3 HEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK-LELLNLSSNVLYETLD--LESL 79 (487)
T ss_dssp CEEEEETTEEEEESCCTTTHHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTT-CCEEECTTSCCEEEEE--CTTC
T ss_pred ceecCCCceeecccCchhhhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCC-CCEEEeeCCCCCCCcc--cccC
Confidence 455566655443333332333333 34458999999999999888888988886 9999999999998776 8999
Q ss_pred ccccccccccceeeeccCcccCCCcccceeeccCccccccCCccccCCCCCcEEeccCCccCccCCCCCCCcCCCceEec
Q 038612 322 VNLNLFSLHLNQLIGTIPHVIGSLKNLQLLYLYGNSLEGNIPSSLGNLTLLTKLALDFNNLQGNIPSSLGSCQNLMELIV 401 (678)
Q Consensus 322 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 401 (678)
++|+.|++++|.+.+..+ .++|++|++++|.+.+..+. .+++|++|++++|.+.+..|..+..+++|+.|++
T Consensus 80 ~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 151 (487)
T 3oja_A 80 STLRTLDLNNNYVQELLV-----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDL 151 (487)
T ss_dssp TTCCEEECCSSEEEEEEE-----CTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEEC
T ss_pred CCCCEEEecCCcCCCCCC-----CCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEEC
Confidence 999999999999986543 38999999999999876554 4688999999999999988889999999999999
Q ss_pred CCCccccccCcccc-cccccceEEEcCCCcccccCCccccCcccCCeeecccCcccccCCccccCCCCCCEEECcCCccc
Q 038612 402 SHNKLNGTLPQQIL-EIRTLSFQLDLSNNLLSGYLPFRVGNLKNLARLDISMNHFFGEIPATLSACTSLEYLYMQGNSFG 480 (678)
Q Consensus 402 ~~n~l~~~~p~~~~-~~~~l~~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 480 (678)
++|.+.+..|..+. .++.+ +.|++++|.+++..+ ...+++|++|+|++|.+++..| .+..+++|+.|+|++|.++
T Consensus 152 s~N~l~~~~~~~l~~~l~~L-~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~ 227 (487)
T 3oja_A 152 KLNEIDTVNFAELAASSDTL-EHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV 227 (487)
T ss_dssp TTSCCCEEEGGGGGGGTTTC-CEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC
T ss_pred CCCCCCCcChHHHhhhCCcc-cEEecCCCccccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCc
Confidence 99999988888776 67777 899999999997744 3468999999999999996544 5889999999999999998
Q ss_pred cccCccccCCCCCCEEECCCCccc-ccCCccCCCCCCCCEEeCC
Q 038612 481 GRIPLSLISLKSLKVLDLSRNNLS-GKIPEYLENLPFLQYLDLS 523 (678)
Q Consensus 481 ~~~~~~~~~l~~L~~L~ls~n~l~-~~~p~~l~~l~~L~~L~l~ 523 (678)
+ +|..+..+++|+.|++++|.+. +.+|..+..++.|+.++++
T Consensus 228 ~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 228 L-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp E-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred c-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 5 6777889999999999999998 6777888888888888776
No 73
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=1.1e-28 Score=274.33 Aligned_cols=414 Identities=16% Similarity=0.141 Sum_probs=282.5
Q ss_pred CcEEEEEcCCCCCCCccc-----------------CCCCCCCCEEECCCCCCccccChhhc-CCccCcEEeccCC-CCcc
Q 038612 76 QRVTELYLRNQSLGADIG-----------------YSSWSKLEKLSIAVNHLRGQLPASIG-NLSALQAFDVGEN-TLHG 136 (678)
Q Consensus 76 ~~v~~l~l~~~~l~~~~~-----------------~~~l~~L~~L~Ls~n~~~~~~~~~l~-~l~~L~~L~ls~n-~l~~ 136 (678)
.+++.++++++....... ...+++|++|+|++|.+++..+..+. .+++|++|++++| .++.
T Consensus 66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~ 145 (594)
T 2p1m_B 66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFST 145 (594)
T ss_dssp TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEH
T ss_pred CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCH
Confidence 467788887764221111 23578999999999999887777775 7899999999998 4443
Q ss_pred C-CCccCCCCCCCCEEEcccccccccCcccc----cCCCCCcEEECCCCC--CCccCChhhhcCCCCCCEEEcccCcCCC
Q 038612 137 R-IPESLGQLRSLKFLNVEENNFSGMVPVSI----YNISSLEMIFLPANR--LEGILPLNIGFNLPNLKSLIVAQNNLTG 209 (678)
Q Consensus 137 ~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~l~~L~~L~l~~n~--~~~~~p~~~~~~l~~L~~L~l~~n~l~~ 209 (678)
. ++..+.++++|++|++++|.+++..+..+ ..+++|++|++++|. +.......+...+++|++|++++|....
T Consensus 146 ~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~ 225 (594)
T 2p1m_B 146 DGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE 225 (594)
T ss_dssp HHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH
T ss_pred HHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH
Confidence 2 44445578999999999999876554444 367899999999987 2222122333357999999999983322
Q ss_pred CCCccCcCCCCCcEEeccCCc-------ceeccCCCCCCCCCCCeEE-cccCcccccCCCCcccccccCCCCCCcEEEcc
Q 038612 210 PIPHSLSNASNLIELNLGQNH-------FTGKVSIDFNGLSDLAWLS-FEANNLGAEASNDLDFVFSLTNCSKLEWLELR 281 (678)
Q Consensus 210 ~~~~~l~~l~~L~~L~L~~n~-------l~~~~~~~~~~l~~L~~L~-l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~ 281 (678)
.++..+.++++|++|+++.+. +.+ .+..+.++++|+.+. +...... .++..+..+++|++|+++
T Consensus 226 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~~-------~l~~~~~~~~~L~~L~L~ 297 (594)
T 2p1m_B 226 KLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVPA-------YLPAVYSVCSRLTTLNLS 297 (594)
T ss_dssp HHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCGG-------GGGGGHHHHTTCCEEECT
T ss_pred HHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccchh-------hHHHHHHhhCCCCEEEcc
Confidence 367778889999999966543 333 233577888999883 3322111 122233467899999999
Q ss_pred cCCCCcccChh-HhhccccCcEEEccCcceecc-CCccCcCCcccccccccc---------ceeeeccCccc-CCCcccc
Q 038612 282 KNQFGGNLPHF-IANLSKTMTIIDMGENKLSGT-IPLGIGNLVNLNLFSLHL---------NQLIGTIPHVI-GSLKNLQ 349 (678)
Q Consensus 282 ~n~~~~~~p~~-~~~~~~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~---------n~~~~~~~~~~-~~l~~L~ 349 (678)
+|.+++..... +..++ +|+.|++++| +.+. ++.....+++|+.|++.. +.+++.....+ ..+++|+
T Consensus 298 ~~~l~~~~l~~~~~~~~-~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~ 375 (594)
T 2p1m_B 298 YATVQSYDLVKLLCQCP-KLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLE 375 (594)
T ss_dssp TCCCCHHHHHHHHTTCT-TCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCC
T ss_pred CCCCCHHHHHHHHhcCC-CcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHH
Confidence 99977554333 33454 5999999988 4322 222234578899998833 44443332233 3488999
Q ss_pred eeeccCccccccCCcccc-CCCCCcEEecc--C----CccCcc-----CCCCCCCcCCCceEecCCCccccccCccccc-
Q 038612 350 LLYLYGNSLEGNIPSSLG-NLTLLTKLALD--F----NNLQGN-----IPSSLGSCQNLMELIVSHNKLNGTLPQQILE- 416 (678)
Q Consensus 350 ~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~--~----n~l~~~-----~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~- 416 (678)
+|.+..|.+++..+..+. .+++|++|+++ + +.++.. ++..+..+++|+.|++++ .+.+..+..+..
T Consensus 376 ~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~ 454 (594)
T 2p1m_B 376 SVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTY 454 (594)
T ss_dssp EEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHH
T ss_pred HHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHh
Confidence 999988888766555554 58999999999 3 445421 111255678999999987 666555555555
Q ss_pred ccccceEEEcCCCcccccCCccc-cCcccCCeeecccCcccccCCc-cccCCCCCCEEECcCCccccccCccc-cCCCCC
Q 038612 417 IRTLSFQLDLSNNLLSGYLPFRV-GNLKNLARLDISMNHFFGEIPA-TLSACTSLEYLYMQGNSFGGRIPLSL-ISLKSL 493 (678)
Q Consensus 417 ~~~l~~~L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L 493 (678)
++.+ +.|++++|.+++.....+ ..+++|++|+|++|.+++..+. ....+++|++|++++|+++......+ ..++.|
T Consensus 455 ~~~L-~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l 533 (594)
T 2p1m_B 455 AKKM-EMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKL 533 (594)
T ss_dssp CTTC-CEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTE
T ss_pred chhc-cEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCC
Confidence 5666 899999999876555444 6689999999999999655443 34568999999999999864433334 445666
Q ss_pred CEEECCCC
Q 038612 494 KVLDLSRN 501 (678)
Q Consensus 494 ~~L~ls~n 501 (678)
+...+..+
T Consensus 534 ~i~~~~~~ 541 (594)
T 2p1m_B 534 NVEVIDER 541 (594)
T ss_dssp EEEEECSS
T ss_pred EEEEecCC
Confidence 65555444
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=2.6e-24 Score=214.10 Aligned_cols=210 Identities=24% Similarity=0.245 Sum_probs=133.4
Q ss_pred cCcEEEccCcceeccCCccCcCCccccccccccceeeeccCcccCCCcccceeeccCccccccCCccccCCCCCcEEecc
Q 038612 299 TMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLIGTIPHVIGSLKNLQLLYLYGNSLEGNIPSSLGNLTLLTKLALD 378 (678)
Q Consensus 299 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 378 (678)
+++.|++++|++++..+..+..+++|+.|++++|++.+..+..|..+++|++|++++|.+.+..+..+.++++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 35566666665555444455555555555555555554444445555555555555555554444445555555555555
Q ss_pred CCccCccCCCCCCCcCCCceEecCCCccccccCcccccccccceEEEcCCCccccc-CCccccCcccCCeeecccCcccc
Q 038612 379 FNNLQGNIPSSLGSCQNLMELIVSHNKLNGTLPQQILEIRTLSFQLDLSNNLLSGY-LPFRVGNLKNLARLDISMNHFFG 457 (678)
Q Consensus 379 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~~~~ 457 (678)
+|.+.+..+..+..+++|++|+++ +|.+.+. +|..+..+++|++|++++|++++
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~-------------------------~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~ 163 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVA-------------------------HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECC-------------------------SSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred CCCccccCchhcccCCCCCEEECc-------------------------CCccceecCchhhccCCCCCEEECCCCCCCc
Confidence 555544444344444455555444 4444432 35566677778888888887776
Q ss_pred cCCccccCCCCCC----EEECcCCccccccCccccCCCCCCEEECCCCcccccCCccCCCCCCCCEEeCCcCcceeeCCC
Q 038612 458 EIPATLSACTSLE----YLYMQGNSFGGRIPLSLISLKSLKVLDLSRNNLSGKIPEYLENLPFLQYLDLSYNHFEGQVPA 533 (678)
Q Consensus 458 ~~~~~~~~l~~L~----~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~ 533 (678)
..+..+..+++|+ +|++++|++.+..+..+.. .+|+.|++++|++++..+..+..+++|+.|++++|++.+.+|.
T Consensus 164 ~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 242 (276)
T 2z62_A 164 IYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 242 (276)
T ss_dssp ECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTT
T ss_pred CCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCc
Confidence 6666666555555 7888888888666655544 4899999999999977777788899999999999999988775
Q ss_pred C
Q 038612 534 K 534 (678)
Q Consensus 534 ~ 534 (678)
.
T Consensus 243 l 243 (276)
T 2z62_A 243 I 243 (276)
T ss_dssp T
T ss_pred h
Confidence 4
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.91 E-value=2e-23 Score=207.68 Aligned_cols=209 Identities=19% Similarity=0.171 Sum_probs=167.5
Q ss_pred CCCcEEEcccCCCCcccChhHhhccccCcEEEccCcceeccCCccCcCCccccccccccceeeeccCcccCCCcccceee
Q 038612 273 SKLEWLELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLIGTIPHVIGSLKNLQLLY 352 (678)
Q Consensus 273 ~~L~~L~L~~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 352 (678)
++|++|++++|.+.+..+..+..++. |++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+++|++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPE-LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTT-CSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCcccccCHhHhccccC-CcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 57999999999999877778888876 99999999999988888999999999999999999988888999999999999
Q ss_pred ccCccccccCCccccCCCCCcEEeccCCccCcc-CCCCCCCcCCCceEecCCCccccccCcccccccccceEEEcCCCcc
Q 038612 353 LYGNSLEGNIPSSLGNLTLLTKLALDFNNLQGN-IPSSLGSCQNLMELIVSHNKLNGTLPQQILEIRTLSFQLDLSNNLL 431 (678)
Q Consensus 353 l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~L~l~~n~l 431 (678)
+++|.+.+..+..+..+++|++|++++|.+.+. +|..+..+++|++|++++|++.+..+..+..+..+
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L----------- 175 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM----------- 175 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTC-----------
T ss_pred CCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhc-----------
Confidence 999999987777899999999999999999864 58889999999999999998885544444433333
Q ss_pred cccCCccccCcccCC-eeecccCcccccCCccccCCCCCCEEECcCCccccccCccccCCCCCCEEECCCCcccc
Q 038612 432 SGYLPFRVGNLKNLA-RLDISMNHFFGEIPATLSACTSLEYLYMQGNSFGGRIPLSLISLKSLKVLDLSRNNLSG 505 (678)
Q Consensus 432 ~~~~~~~~~~l~~L~-~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~ 505 (678)
+.+. +|++++|.+++..+..+. ..+|++|++++|++++..+..+..+++|+.|++++|++..
T Consensus 176 -----------~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 176 -----------PLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp -----------TTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred -----------cccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 1222 566666666644444333 3367777777777776656666777777777777777774
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=5.1e-23 Score=203.86 Aligned_cols=185 Identities=25% Similarity=0.224 Sum_probs=126.7
Q ss_pred ccceeeccCccccccCCccccCCCCCcEEeccCCccCccCCCCCCCcCCCceEecCCCccccccCcccccccccceEEEc
Q 038612 347 NLQLLYLYGNSLEGNIPSSLGNLTLLTKLALDFNNLQGNIPSSLGSCQNLMELIVSHNKLNGTLPQQILEIRTLSFQLDL 426 (678)
Q Consensus 347 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~L~l 426 (678)
++++|++++|.+.+..+..|.++++|++|++++|.+....+..|..+++|++|++++|++.+..+..+..++.+ +.|++
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l 116 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNL-AELRL 116 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSC-CEEEC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCC-CEEEC
Confidence 45555555555554444445555555555555555554444444555555555555555553333333444444 55666
Q ss_pred CCCcccccCCccccCcccCCeeecccCcccccCCccccCCCCCCEEECcCCccccccCccccCCCCCCEEECCCCccccc
Q 038612 427 SNNLLSGYLPFRVGNLKNLARLDISMNHFFGEIPATLSACTSLEYLYMQGNSFGGRIPLSLISLKSLKVLDLSRNNLSGK 506 (678)
Q Consensus 427 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ 506 (678)
++|.+++..+..+..+++|++|+|++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++.
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 196 (270)
T 2o6q_A 117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV 196 (270)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcC
Confidence 66666655666677788888888888888866666688888899999999988877777788888999999999999877
Q ss_pred CCccCCCCCCCCEEeCCcCcceeeCC
Q 038612 507 IPEYLENLPFLQYLDLSYNHFEGQVP 532 (678)
Q Consensus 507 ~p~~l~~l~~L~~L~l~~n~l~~~~p 532 (678)
.+..+..+++|+.|++++|++.+..+
T Consensus 197 ~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 197 PEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred CHHHhccccCCCEEEecCCCeeCCCc
Confidence 77778888899999999998887665
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=5.3e-23 Score=203.92 Aligned_cols=166 Identities=21% Similarity=0.298 Sum_probs=97.8
Q ss_pred CCCCcccCCCCCCCCEEECCCCCCccccChhhcCCccCcEEeccCCCCccCCCccCCCCCCCCEEEcccccccccCcccc
Q 038612 87 SLGADIGYSSWSKLEKLSIAVNHLRGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSI 166 (678)
Q Consensus 87 ~l~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~ 166 (678)
.+.+......+++|+.|++++|.+.. ...+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+
T Consensus 30 ~~~~~~~~~~l~~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~ 105 (272)
T 3rfs_A 30 SVTDAVTQNELNSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVF 105 (272)
T ss_dssp CTTSEECHHHHTTCCEEECTTSCCCC--CTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred ccccccccccccceeeeeeCCCCccc--ccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHh
Confidence 33333344455666666666666652 23466666666666666666642 356666666666666666665555556
Q ss_pred cCCCCCcEEECCCCCCCccCChhhhcCCCCCCEEEcccCcCCCCCCccCcCCCCCcEEeccCCcceeccCCCCCCCCCCC
Q 038612 167 YNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLIELNLGQNHFTGKVSIDFNGLSDLA 246 (678)
Q Consensus 167 ~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 246 (678)
.++++|++|++++|.+++..+..+. .+++|++|++++|.+++..+..+.++++|++|++++|++++..+..+..+++|+
T Consensus 106 ~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 184 (272)
T 3rfs_A 106 DKLTNLKELVLVENQLQSLPDGVFD-KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLK 184 (272)
T ss_dssp TTCTTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cCCcCCCEEECCCCcCCccCHHHhc-cCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCC
Confidence 6666666666666666643333333 566666666666666655555556666666666666666655554455555555
Q ss_pred eEEcccCcccc
Q 038612 247 WLSFEANNLGA 257 (678)
Q Consensus 247 ~L~l~~n~l~~ 257 (678)
+|++++|.+..
T Consensus 185 ~L~L~~N~l~~ 195 (272)
T 3rfs_A 185 DLRLYQNQLKS 195 (272)
T ss_dssp EEECCSSCCSC
T ss_pred EEECCCCcCCc
Confidence 55555554443
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=1e-22 Score=203.29 Aligned_cols=205 Identities=25% Similarity=0.203 Sum_probs=132.7
Q ss_pred cCCccccccccccceeeeccCcccCCCcccceeeccCccccccCCccccCCCCCcEEeccCCccCccCCCCCCCcCCCce
Q 038612 319 GNLVNLNLFSLHLNQLIGTIPHVIGSLKNLQLLYLYGNSLEGNIPSSLGNLTLLTKLALDFNNLQGNIPSSLGSCQNLME 398 (678)
Q Consensus 319 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 398 (678)
.++++++.++++++.++. +|..+ .++++.|++++|.+.+..+..+..+++|++|++++|.+++..+. ..+++|++
T Consensus 7 ~~l~~l~~l~~~~~~l~~-ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~ 81 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTA-LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGT 81 (290)
T ss_dssp ECSTTCCEEECTTSCCSS-CCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCE
T ss_pred cccCCccEEECCCCCCCc-CCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCE
Confidence 344455555555555542 23222 24566666666666655555666666666666666666643322 45666666
Q ss_pred EecCCCccccccCcccccccccceEEEcCCCcccccCCccccCcccCCeeecccCcccccCCccccCCCCCCEEECcCCc
Q 038612 399 LIVSHNKLNGTLPQQILEIRTLSFQLDLSNNLLSGYLPFRVGNLKNLARLDISMNHFFGEIPATLSACTSLEYLYMQGNS 478 (678)
Q Consensus 399 L~l~~n~l~~~~p~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~ 478 (678)
|++++|++. .+|..+..++.+ +.|++++|.+++..+..|..+++|++|+|++|++++..+..|..+++|+.|+|++|+
T Consensus 82 L~Ls~N~l~-~l~~~~~~l~~L-~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 82 LDLSHNQLQ-SLPLLGQTLPAL-TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EECCSSCCS-SCCCCTTTCTTC-CEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EECCCCcCC-cCchhhccCCCC-CEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 666666665 555555555555 566666666666666667777777777777777776666667777777888888877
Q ss_pred cccccCccccCCCCCCEEECCCCcccccCCccCCCCCCCCEEeCCcCcceeeC
Q 038612 479 FGGRIPLSLISLKSLKVLDLSRNNLSGKIPEYLENLPFLQYLDLSYNHFEGQV 531 (678)
Q Consensus 479 l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~ 531 (678)
+++..+..|..+++|+.|++++|+++ .+|..+..+++|+.+++++|++.+..
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcC
Confidence 77666666677777888888888777 56666666777777777777776543
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=7e-23 Score=203.04 Aligned_cols=206 Identities=18% Similarity=0.259 Sum_probs=174.6
Q ss_pred CcEEEEEcCCCCCCCcccCCCCCCCCEEECCCCCCccccChhhcCCccCcEEeccCCCCccCCCccCCCCCCCCEEEccc
Q 038612 76 QRVTELYLRNQSLGADIGYSSWSKLEKLSIAVNHLRGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVEE 155 (678)
Q Consensus 76 ~~v~~l~l~~~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~ 155 (678)
..++.+++.++.+.....+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++..+..|.++++|++|++++
T Consensus 41 ~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 118 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118 (272)
T ss_dssp TTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred cceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCC
Confidence 57889999999998888899999999999999999863 5899999999999999999988778899999999999999
Q ss_pred ccccccCcccccCCCCCcEEECCCCCCCccCChhhhcCCCCCCEEEcccCcCCCCCCccCcCCCCCcEEeccCCcceecc
Q 038612 156 NNFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLIELNLGQNHFTGKV 235 (678)
Q Consensus 156 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 235 (678)
|.+++..+..+.++++|++|++++|.+++..+..+. .+++|++|++++|.+++..+..+..+++|++|++++|++++..
T Consensus 119 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 197 (272)
T 3rfs_A 119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFD-KLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP 197 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CcCCccCHHHhccCCCCCEEECCCCccCccCHHHhc-cCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccC
Confidence 999988888899999999999999999955444444 8999999999999999888878899999999999999999888
Q ss_pred CCCCCCCCCCCeEEcccCcccccCCCCcccccccCCCCCCcEEEcccCCCCcccChhHhhcc
Q 038612 236 SIDFNGLSDLAWLSFEANNLGAEASNDLDFVFSLTNCSKLEWLELRKNQFGGNLPHFIANLS 297 (678)
Q Consensus 236 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~~~~ 297 (678)
+..+..+++|+.|++++|.+.+ .+++|+.+++..|.+.|.+|.+++.+.
T Consensus 198 ~~~~~~l~~L~~L~l~~N~~~~-------------~~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 198 DGVFDRLTSLQYIWLHDNPWDC-------------TCPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp TTTTTTCTTCCEEECCSSCBCC-------------CTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred HHHHhCCcCCCEEEccCCCccc-------------cCcHHHHHHHHHHhCCCcccCcccccC
Confidence 8778888888888888776543 244566666666666666665555443
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=2.5e-22 Score=200.57 Aligned_cols=207 Identities=26% Similarity=0.202 Sum_probs=180.6
Q ss_pred ccCCCcccceeeccCccccccCCccccCCCCCcEEeccCCccCccCCCCCCCcCCCceEecCCCccccccCccccccccc
Q 038612 341 VIGSLKNLQLLYLYGNSLEGNIPSSLGNLTLLTKLALDFNNLQGNIPSSLGSCQNLMELIVSHNKLNGTLPQQILEIRTL 420 (678)
Q Consensus 341 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l 420 (678)
.++.++++++++++++.++ .+|..+. +.+++|++++|.+.+..+..|..+++|+.|++++|.+.+. +.. ..++.+
T Consensus 5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L 79 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVL 79 (290)
T ss_dssp EEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC-SCCTTC
T ss_pred cccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC-CCCCcC
Confidence 3567889999999999998 4665554 7899999999999988888999999999999999999854 332 567777
Q ss_pred ceEEEcCCCcccccCCccccCcccCCeeecccCcccccCCccccCCCCCCEEECcCCccccccCccccCCCCCCEEECCC
Q 038612 421 SFQLDLSNNLLSGYLPFRVGNLKNLARLDISMNHFFGEIPATLSACTSLEYLYMQGNSFGGRIPLSLISLKSLKVLDLSR 500 (678)
Q Consensus 421 ~~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~ 500 (678)
+.|++++|.++ .+|..+..+++|++|++++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|++++
T Consensus 80 -~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 157 (290)
T 1p9a_G 80 -GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157 (290)
T ss_dssp -CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred -CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC
Confidence 89999999998 5677889999999999999999987788899999999999999999988888899999999999999
Q ss_pred CcccccCCccCCCCCCCCEEeCCcCcceeeCCCCCccCCCCceeccCCCCCccc
Q 038612 501 NNLSGKIPEYLENLPFLQYLDLSYNHFEGQVPAKGVFHNKTSISLVGNENLCGG 554 (678)
Q Consensus 501 n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~n~~lc~~ 554 (678)
|++++..+..+..+++|+.|++++|++....+.......++.+.+.+||+.|.+
T Consensus 158 N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 158 NNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred CcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccCcC
Confidence 999977777889999999999999999843333344567899999999999865
No 81
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=3.8e-22 Score=195.28 Aligned_cols=190 Identities=22% Similarity=0.261 Sum_probs=128.8
Q ss_pred CCCCcccccccCCCCcEEEEEcCCCCCCCcccCCCCCCCCEEECCCCCCccccChhhcCCccCcEEeccCCCCccCCCcc
Q 038612 62 NLCQWTGVTCGRRHQRVTELYLRNQSLGADIGYSSWSKLEKLSIAVNHLRGQLPASIGNLSALQAFDVGENTLHGRIPES 141 (678)
Q Consensus 62 ~~c~w~gv~c~~~~~~v~~l~l~~~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~ 141 (678)
+||.|.|..|.. ..+.++++++.+...+.- -.+.++.|++++|.+.+..+..|.++++|++|++++|.+++..+..
T Consensus 3 ~Cp~~~gC~C~~---~~~~l~~~~~~l~~~p~~-~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 78 (251)
T 3m19_A 3 TCETVTGCTCNE---GKKEVDCQGKSLDSVPSG-IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGV 78 (251)
T ss_dssp -CHHHHSSEEEG---GGTEEECTTCCCSSCCSC-CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT
T ss_pred cCCCCCceEcCC---CCeEEecCCCCccccCCC-CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhH
Confidence 578999999953 334577777777654321 1256777888877777777777777777777777777777766666
Q ss_pred CCCCCCCCEEEcccccccccCcccccCCCCCcEEECCCCCCCccCChhhhcCCCCCCEEEcccCcCCCCCCccCcCCCCC
Q 038612 142 LGQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNL 221 (678)
Q Consensus 142 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 221 (678)
|..+++|++|+|++|.+++..+..+..+++|++|++++|.+++ +|...+..+++|++|++++|.+++..+..|..+++|
T Consensus 79 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 157 (251)
T 3m19_A 79 FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157 (251)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred hccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCC-cChhHhccCCcccEEECcCCcCCccCHHHcCcCcCC
Confidence 7777777777777777776666667777777777777777773 333333367777777777777776555567777777
Q ss_pred cEEeccCCcceeccCCCCCCCCCCCeEEcccCccc
Q 038612 222 IELNLGQNHFTGKVSIDFNGLSDLAWLSFEANNLG 256 (678)
Q Consensus 222 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 256 (678)
++|++++|++++..+..+..+++|+.|++++|.+.
T Consensus 158 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 158 QTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 77777777776555555555555555555554443
No 82
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=1.1e-23 Score=218.17 Aligned_cols=262 Identities=16% Similarity=0.193 Sum_probs=155.0
Q ss_pred EEECCCCCCccccChhhcCCccCcEEeccCCCCccCCC----ccCCCCC-CCCEEEcccccccccCcccccCC-----CC
Q 038612 102 KLSIAVNHLRGQLPASIGNLSALQAFDVGENTLHGRIP----ESLGQLR-SLKFLNVEENNFSGMVPVSIYNI-----SS 171 (678)
Q Consensus 102 ~L~Ls~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p----~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l-----~~ 171 (678)
.++++.|.+++.+|..+...++|++|++++|.+++..+ ..|.+++ +|++|+|++|.+++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 35677788888777777777778888888888876655 5667777 78888888888877666666654 78
Q ss_pred CcEEECCCCCCCccCChhhhc---CC-CCCCEEEcccCcCCCCCCccC----cC-CCCCcEEeccCCcceeccCC----C
Q 038612 172 LEMIFLPANRLEGILPLNIGF---NL-PNLKSLIVAQNNLTGPIPHSL----SN-ASNLIELNLGQNHFTGKVSI----D 238 (678)
Q Consensus 172 L~~L~l~~n~~~~~~p~~~~~---~l-~~L~~L~l~~n~l~~~~~~~l----~~-l~~L~~L~L~~n~l~~~~~~----~ 238 (678)
|++|++++|.+++..+..+.. .+ ++|++|++++|.+++..+..+ .. .++|++|++++|.+.+.... .
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 888888888877665554431 33 678888888888775554433 33 35778888887777643322 2
Q ss_pred CCCCC-CCCeEEcccCcccccCCCCcccccccCCC-CCCcEEEcccCCCCcc----cChhHhhccccCcEEEccCcceec
Q 038612 239 FNGLS-DLAWLSFEANNLGAEASNDLDFVFSLTNC-SKLEWLELRKNQFGGN----LPHFIANLSKTMTIIDMGENKLSG 312 (678)
Q Consensus 239 ~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~l~~~-~~L~~L~L~~n~~~~~----~p~~~~~~~~~L~~L~L~~n~l~~ 312 (678)
+..++ +|++|++++|.++..... .+...+..+ ++|++|+|++|.+++. ++..+...+.+|+.|++++|.+++
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~--~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 239 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCA--ELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHG 239 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHH--HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHH--HHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCc
Confidence 23333 566666666655543221 111223333 3566666666665542 333333333345555555555543
Q ss_pred cCCccCcCCccccccccccceeeeccCcccCCCcccceeeccCccccc-------cCCccccCCCCCcEEeccCCccCcc
Q 038612 313 TIPLGIGNLVNLNLFSLHLNQLIGTIPHVIGSLKNLQLLYLYGNSLEG-------NIPSSLGNLTLLTKLALDFNNLQGN 385 (678)
Q Consensus 313 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~-------~~~~~~~~l~~L~~L~L~~n~l~~~ 385 (678)
..+.. +...+..+++|++|++++|.+.+ .++..+..+++|+.|++++|.+...
T Consensus 240 ~~~~~--------------------l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 240 PSLEN--------------------LKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CCHHH--------------------HHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHH--------------------HHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 22211 11223445556666666665322 1223455666666677766666544
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=1.5e-23 Score=217.09 Aligned_cols=262 Identities=18% Similarity=0.230 Sum_probs=173.9
Q ss_pred EEeccCCCCccCCCccCCCCCCCCEEEcccccccccCc----ccccCCC-CCcEEECCCCCCCccCChhhhcCC-----C
Q 038612 126 AFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVP----VSIYNIS-SLEMIFLPANRLEGILPLNIGFNL-----P 195 (678)
Q Consensus 126 ~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~-~L~~L~l~~n~~~~~~p~~~~~~l-----~ 195 (678)
++++++|.+++.+|..+...++|++|+|++|.+++..+ ..+..++ +|++|++++|.+++..+..+. .+ +
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~-~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELV-QILAAIPA 80 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHH-HHHHTSCT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHH-HHHhccCC
Confidence 46788888888888877777779999999999887666 6778888 899999999988876666555 32 8
Q ss_pred CCCEEEcccCcCCCCCCcc----CcCC-CCCcEEeccCCcceeccCCCC----CC-CCCCCeEEcccCcccccCCCCccc
Q 038612 196 NLKSLIVAQNNLTGPIPHS----LSNA-SNLIELNLGQNHFTGKVSIDF----NG-LSDLAWLSFEANNLGAEASNDLDF 265 (678)
Q Consensus 196 ~L~~L~l~~n~l~~~~~~~----l~~l-~~L~~L~L~~n~l~~~~~~~~----~~-l~~L~~L~l~~n~l~~~~~~~~~~ 265 (678)
+|++|++++|.+++..+.. +..+ ++|++|++++|++++..+..+ .. .++|++|++++|.+......
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~---- 156 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSD---- 156 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHH----
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHH----
Confidence 8888888888887665553 3344 788888888888765444332 12 13455555555544432111
Q ss_pred ccccCCCCCCcEEEcccCCCCcccChhHhhccccCcEEEccCcceeccCCccC----cCC-ccccccccccceeeec---
Q 038612 266 VFSLTNCSKLEWLELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGI----GNL-VNLNLFSLHLNQLIGT--- 337 (678)
Q Consensus 266 ~~~l~~~~~L~~L~L~~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l----~~l-~~L~~L~l~~n~~~~~--- 337 (678)
.++..+...+.+|+.|++++|++++..+..+ ..+ ++|+.|++++|.+.+.
T Consensus 157 ----------------------~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~ 214 (362)
T 3goz_A 157 ----------------------ELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYA 214 (362)
T ss_dssp ----------------------HHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHH
T ss_pred ----------------------HHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHH
Confidence 1122222333235555555555544333222 223 3566666666665542
Q ss_pred -cCcccCC-CcccceeeccCccccccCC----ccccCCCCCcEEeccCCccCcc-------CCCCCCCcCCCceEecCCC
Q 038612 338 -IPHVIGS-LKNLQLLYLYGNSLEGNIP----SSLGNLTLLTKLALDFNNLQGN-------IPSSLGSCQNLMELIVSHN 404 (678)
Q Consensus 338 -~~~~~~~-l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~-------~~~~~~~l~~L~~L~l~~n 404 (678)
++..+.. .++|++|++++|.+.+..+ ..+..+++|++|++++|.+... ++..+..+++|+.|++++|
T Consensus 215 ~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N 294 (362)
T 3goz_A 215 ELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK 294 (362)
T ss_dssp HHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSC
T ss_pred HHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCC
Confidence 3444544 4589999999999886443 3457789999999999985432 3456788999999999999
Q ss_pred ccccccCccc
Q 038612 405 KLNGTLPQQI 414 (678)
Q Consensus 405 ~l~~~~p~~~ 414 (678)
++.+..+..+
T Consensus 295 ~l~~~~~~~~ 304 (362)
T 3goz_A 295 EIHPSHSIPI 304 (362)
T ss_dssp BCCGGGCHHH
T ss_pred cCCCcchHHH
Confidence 9986655443
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.87 E-value=8.4e-22 Score=199.36 Aligned_cols=227 Identities=19% Similarity=0.193 Sum_probs=148.2
Q ss_pred CCcEEEcccCCCCcccChh---HhhccccCcEEEccCcceeccCCccC--cCCccccccccccceeeeccC----cccCC
Q 038612 274 KLEWLELRKNQFGGNLPHF---IANLSKTMTIIDMGENKLSGTIPLGI--GNLVNLNLFSLHLNQLIGTIP----HVIGS 344 (678)
Q Consensus 274 ~L~~L~L~~n~~~~~~p~~---~~~~~~~L~~L~L~~n~l~~~~~~~l--~~l~~L~~L~l~~n~~~~~~~----~~~~~ 344 (678)
.++.+.+.++.+....-.. ....+ +|++|++++|.+.+..|..+ ..+++|+.|++++|.+.+..+ ..+..
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYS-RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHS-CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccC-ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 4667777776654321111 11223 38888888888888888777 778888888888888776544 33446
Q ss_pred CcccceeeccCccccccCCccccCCCCCcEEeccCCccCcc--C--CCCCCCcCCCceEecCCCccccccCccccccccc
Q 038612 345 LKNLQLLYLYGNSLEGNIPSSLGNLTLLTKLALDFNNLQGN--I--PSSLGSCQNLMELIVSHNKLNGTLPQQILEIRTL 420 (678)
Q Consensus 345 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~--~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l 420 (678)
+++|++|++++|.+.+..+..++.+++|++|++++|++.+. + +..+..+++|++|++++|++. .++....
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~----- 217 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCA----- 217 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHH-----
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHH-----
Confidence 77888888888888777777777788888888888876542 1 223356777777777777765 2221100
Q ss_pred ceEEEcCCCcccccCCccccCcccCCeeecccCcccccCCccccCC---CCCCEEECcCCccccccCccccCCCCCCEEE
Q 038612 421 SFQLDLSNNLLSGYLPFRVGNLKNLARLDISMNHFFGEIPATLSAC---TSLEYLYMQGNSFGGRIPLSLISLKSLKVLD 497 (678)
Q Consensus 421 ~~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 497 (678)
..+..+++|++|+|++|++.+..|..+..+ ++|++|+|++|+++ .+|..+. ++|+.|+
T Consensus 218 ----------------~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~ 278 (310)
T 4glp_A 218 ----------------ALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLD 278 (310)
T ss_dssp ----------------HHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEE
T ss_pred ----------------HHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEE
Confidence 012345666777777777766656555554 57777777777776 4455443 6777777
Q ss_pred CCCCcccccCCccCCCCCCCCEEeCCcCcce
Q 038612 498 LSRNNLSGKIPEYLENLPFLQYLDLSYNHFE 528 (678)
Q Consensus 498 ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 528 (678)
+++|++++. |. +..+++|+.|++++|+++
T Consensus 279 Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 279 LSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred CCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence 777777753 32 566777778888877765
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=3.8e-23 Score=212.25 Aligned_cols=252 Identities=20% Similarity=0.191 Sum_probs=195.7
Q ss_pred CCcEEEcccCCCCcccChhHhhc-cccCcEEEccCcceeccCCccCcCCccccccccccceeeec-cCcccCCCccccee
Q 038612 274 KLEWLELRKNQFGGNLPHFIANL-SKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLIGT-IPHVIGSLKNLQLL 351 (678)
Q Consensus 274 ~L~~L~L~~n~~~~~~p~~~~~~-~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L 351 (678)
.++.++++++.+. +..+..+ ...++.+++++|.+.+..+. +..+++|+.|++++|.+.+. ++..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 4778888888765 4455554 13499999999999877665 56789999999999998765 77788899999999
Q ss_pred eccCccccccCCccccCCCCCcEEeccCC-ccCcc-CCCCCCCcCCCceEecCCC-ccccc-cCccccccc-ccceEEEc
Q 038612 352 YLYGNSLEGNIPSSLGNLTLLTKLALDFN-NLQGN-IPSSLGSCQNLMELIVSHN-KLNGT-LPQQILEIR-TLSFQLDL 426 (678)
Q Consensus 352 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~-~p~~~~~~~-~l~~~L~l 426 (678)
++++|.+.+..+..++.+++|++|++++| .+++. ++..+..+++|++|++++| .+.+. ++..+..++ .+ +.|++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L-~~L~l 202 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI-TQLNL 202 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC-CEEEC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCC-CEEEe
Confidence 99999988878888888999999999999 67653 5666778899999999999 88754 566677777 77 88999
Q ss_pred CCC--ccc-ccCCccccCcccCCeeecccCc-ccccCCccccCCCCCCEEECcCCc-cccccCccccCCCCCCEEECCCC
Q 038612 427 SNN--LLS-GYLPFRVGNLKNLARLDISMNH-FFGEIPATLSACTSLEYLYMQGNS-FGGRIPLSLISLKSLKVLDLSRN 501 (678)
Q Consensus 427 ~~n--~l~-~~~~~~~~~l~~L~~L~Ls~n~-~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ls~n 501 (678)
++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|++++|
T Consensus 203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 999 455 4556677788999999999998 777777888889999999999995 33222236778899999999998
Q ss_pred cccccCCccCCCC-CCCCEEeCCcCcceeeCCCC
Q 038612 502 NLSGKIPEYLENL-PFLQYLDLSYNHFEGQVPAK 534 (678)
Q Consensus 502 ~l~~~~p~~l~~l-~~L~~L~l~~n~l~~~~p~~ 534 (678)
++.. .+..+ ..+..|++++|++++..|..
T Consensus 283 -i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 283 -VPDG---TLQLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp -SCTT---CHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred -cCHH---HHHHHHhhCcceEEecccCccccCCc
Confidence 4322 23333 23666778899998877743
No 86
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=6.1e-24 Score=222.42 Aligned_cols=231 Identities=20% Similarity=0.248 Sum_probs=148.5
Q ss_pred CcEEEccCcceeccC----CccCcCCccccccccccc---eeeeccCcc-------cCCCcccceeeccCccccc----c
Q 038612 300 MTIIDMGENKLSGTI----PLGIGNLVNLNLFSLHLN---QLIGTIPHV-------IGSLKNLQLLYLYGNSLEG----N 361 (678)
Q Consensus 300 L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~l~~n---~~~~~~~~~-------~~~l~~L~~L~l~~n~l~~----~ 361 (678)
|+.|++++|.+.+.. +..+..+++|+.|++++| ++.+.+|.. +..+++|++|++++|.+.+ .
T Consensus 34 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 113 (386)
T 2ca6_A 34 VKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEP 113 (386)
T ss_dssp CCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHH
T ss_pred ccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHH
Confidence 444444444444331 122444555555555543 223333333 3566777777777777765 3
Q ss_pred CCccccCCCCCcEEeccCCccCccCCCC----CCCc---------CCCceEecCCCccc-cccC---cccccccccceEE
Q 038612 362 IPSSLGNLTLLTKLALDFNNLQGNIPSS----LGSC---------QNLMELIVSHNKLN-GTLP---QQILEIRTLSFQL 424 (678)
Q Consensus 362 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~~l---------~~L~~L~l~~n~l~-~~~p---~~~~~~~~l~~~L 424 (678)
++..+..+++|++|++++|.+....+.. +..+ ++|++|++++|++. +.+| ..+..++.+ +.|
T Consensus 114 l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L-~~L 192 (386)
T 2ca6_A 114 LIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL-HTV 192 (386)
T ss_dssp HHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTC-CEE
T ss_pred HHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCc-CEE
Confidence 5556667777777777777765332222 2223 67777788777775 3333 344455666 677
Q ss_pred EcCCCcccc-----cCCccccCcccCCeeecccCccc----ccCCccccCCCCCCEEECcCCccccc----cCcccc--C
Q 038612 425 DLSNNLLSG-----YLPFRVGNLKNLARLDISMNHFF----GEIPATLSACTSLEYLYMQGNSFGGR----IPLSLI--S 489 (678)
Q Consensus 425 ~l~~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~~~----~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~--~ 489 (678)
++++|.++. ..+..+..+++|++|+|++|.++ +.+|..+..+++|++|+|++|.+++. ++..+. .
T Consensus 193 ~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~ 272 (386)
T 2ca6_A 193 KMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLE 272 (386)
T ss_dssp ECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCS
T ss_pred ECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhcc
Confidence 788777762 23446777888888888888885 55677778888888888888888765 455553 3
Q ss_pred CCCCCEEECCCCcccc----cCCccC-CCCCCCCEEeCCcCcceeeC
Q 038612 490 LKSLKVLDLSRNNLSG----KIPEYL-ENLPFLQYLDLSYNHFEGQV 531 (678)
Q Consensus 490 l~~L~~L~ls~n~l~~----~~p~~l-~~l~~L~~L~l~~n~l~~~~ 531 (678)
+++|+.|+|++|.+++ .+|..+ .++++|++|++++|++.+..
T Consensus 273 ~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 273 NIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp SCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 7888888888888887 466666 55788888888888876443
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=1.1e-21 Score=190.66 Aligned_cols=196 Identities=19% Similarity=0.210 Sum_probs=97.0
Q ss_pred ccccccccceeeeccCcccCCCcccceeeccCcc-ccccCCccccCCCCCcEEeccC-CccCccCCCCCCCcCCCceEec
Q 038612 324 LNLFSLHLNQLIGTIPHVIGSLKNLQLLYLYGNS-LEGNIPSSLGNLTLLTKLALDF-NNLQGNIPSSLGSCQNLMELIV 401 (678)
Q Consensus 324 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l 401 (678)
|+.|++++|++.+..+..|..+++|++|++++|. +++..+..|.++++|++|++++ |.+++..+..|..+++|++|++
T Consensus 33 l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l 112 (239)
T 2xwt_C 33 TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGI 112 (239)
T ss_dssp CCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEE
T ss_pred ccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeC
Confidence 3333333333333333334444444444444443 3333333444444444444444 4444333334444444444444
Q ss_pred CCCccccccCcccccccccc--eEEEcCCC-cccccCCccccCcccCC-eeecccCcccccCCccccCCCCCCEEECcCC
Q 038612 402 SHNKLNGTLPQQILEIRTLS--FQLDLSNN-LLSGYLPFRVGNLKNLA-RLDISMNHFFGEIPATLSACTSLEYLYMQGN 477 (678)
Q Consensus 402 ~~n~l~~~~p~~~~~~~~l~--~~L~l~~n-~l~~~~~~~~~~l~~L~-~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n 477 (678)
++|++.+ +|. +..++.+. +.|++++| .+++..+..|..+++|+ +|++++|+++...+..+.. ++|++|++++|
T Consensus 113 ~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n 189 (239)
T 2xwt_C 113 FNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKN 189 (239)
T ss_dssp EEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTC
T ss_pred CCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCC
Confidence 4444442 332 22333320 14555555 44444444556666666 6777766666333333333 66777777777
Q ss_pred c-cccccCccccCC-CCCCEEECCCCcccccCCccCCCCCCCCEEeCCcC
Q 038612 478 S-FGGRIPLSLISL-KSLKVLDLSRNNLSGKIPEYLENLPFLQYLDLSYN 525 (678)
Q Consensus 478 ~-l~~~~~~~~~~l-~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n 525 (678)
+ +++..+..|..+ ++|+.|++++|++++. |.. .+++|+.|+++++
T Consensus 190 ~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 190 KYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKELIARNT 236 (239)
T ss_dssp TTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEEECTTC
T ss_pred CCcccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCceeeccCc
Confidence 3 665555666666 6777777777777643 322 4556666666654
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=5e-21 Score=187.31 Aligned_cols=181 Identities=22% Similarity=0.194 Sum_probs=135.8
Q ss_pred ccceeeccCccccccCCccccCCCCCcEEeccCCccCccCCCCCCCcCCCceEecCCCccccccCcccccccccceEEEc
Q 038612 347 NLQLLYLYGNSLEGNIPSSLGNLTLLTKLALDFNNLQGNIPSSLGSCQNLMELIVSHNKLNGTLPQQILEIRTLSFQLDL 426 (678)
Q Consensus 347 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~L~l 426 (678)
+.++++++++.+. .+|..+. +.+++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..++.+ +.|++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTEL-GTLGL 90 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC-CEEEC
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcC-CEEEC
Confidence 4556666666665 3444443 466677777777666666666666777777777777665555555666666 66777
Q ss_pred CCCcccccCCccccCcccCCeeecccCcccccCCccccCCCCCCEEECcCCccccccCccccCCCCCCEEECCCCccccc
Q 038612 427 SNNLLSGYLPFRVGNLKNLARLDISMNHFFGEIPATLSACTSLEYLYMQGNSFGGRIPLSLISLKSLKVLDLSRNNLSGK 506 (678)
Q Consensus 427 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ 506 (678)
++|.+++..+..+..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..+..+++|++|++++|++++.
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 77777766667777888888999999888866666778888999999999988877777888889999999999999887
Q ss_pred CCccCCCCCCCCEEeCCcCcceeeC
Q 038612 507 IPEYLENLPFLQYLDLSYNHFEGQV 531 (678)
Q Consensus 507 ~p~~l~~l~~L~~L~l~~n~l~~~~ 531 (678)
.+..+..+++|+.|++++|++.+..
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~c~~ 195 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFDCSR 195 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCTTS
T ss_pred CHHHHhCCCCCCEEEeeCCceeCCc
Confidence 7778888899999999999988763
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=4.7e-22 Score=201.21 Aligned_cols=225 Identities=18% Similarity=0.147 Sum_probs=157.0
Q ss_pred CcEEEccCcceeccCCc---cCcCCccccccccccceeeeccCccc--CCCcccceeeccCccccccCC----ccccCCC
Q 038612 300 MTIIDMGENKLSGTIPL---GIGNLVNLNLFSLHLNQLIGTIPHVI--GSLKNLQLLYLYGNSLEGNIP----SSLGNLT 370 (678)
Q Consensus 300 L~~L~L~~n~l~~~~~~---~l~~l~~L~~L~l~~n~~~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~----~~~~~l~ 370 (678)
++.+.+.++.++..... .+..+++|+.|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..++
T Consensus 66 l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~ 145 (310)
T 4glp_A 66 VRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKP 145 (310)
T ss_dssp CCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCS
T ss_pred eeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhcc
Confidence 66677776665432110 11223457777777777776666665 667777777777777665433 2234566
Q ss_pred CCcEEeccCCccCccCCCCCCCcCCCceEecCCCccccccCcccccccccceEEEcCCCcccccCCccccCcccCCeeec
Q 038612 371 LLTKLALDFNNLQGNIPSSLGSCQNLMELIVSHNKLNGTLPQQILEIRTLSFQLDLSNNLLSGYLPFRVGNLKNLARLDI 450 (678)
Q Consensus 371 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 450 (678)
+|++|++++|.+.+..+..+..+++|++|++++|++.+... + ..+..+..+++|++|+|
T Consensus 146 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-----~----------------~~~~~~~~l~~L~~L~L 204 (310)
T 4glp_A 146 GLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERG-----L----------------MAALCPHKFPAIQNLAL 204 (310)
T ss_dssp CCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHH-----H----------------HTTSCTTSSCCCCSCBC
T ss_pred CCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchh-----h----------------hHHHhhhcCCCCCEEEC
Confidence 77777777777766666666666677777776666542100 0 01122456789999999
Q ss_pred ccCcccccCCc----cccCCCCCCEEECcCCccccccCccccCC---CCCCEEECCCCcccccCCccCCCCCCCCEEeCC
Q 038612 451 SMNHFFGEIPA----TLSACTSLEYLYMQGNSFGGRIPLSLISL---KSLKVLDLSRNNLSGKIPEYLENLPFLQYLDLS 523 (678)
Q Consensus 451 s~n~~~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~ 523 (678)
++|+++. ++. .+..+++|++|+|++|++.+..|..+..+ ++|++|++++|+++ .+|..+. ++|+.|+++
T Consensus 205 s~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls 280 (310)
T 4glp_A 205 RNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLS 280 (310)
T ss_dssp CSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECC
T ss_pred CCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECC
Confidence 9999963 232 35788999999999999998888777776 69999999999999 6677664 799999999
Q ss_pred cCcceeeCCCCCccCCCCceeccCCCC
Q 038612 524 YNHFEGQVPAKGVFHNKTSISLVGNEN 550 (678)
Q Consensus 524 ~n~l~~~~p~~~~~~~l~~~~~~~n~~ 550 (678)
+|++++. |....+++++.+++.+|+.
T Consensus 281 ~N~l~~~-~~~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 281 SNRLNRA-PQPDELPEVDNLTLDGNPF 306 (310)
T ss_dssp SCCCCSC-CCTTSCCCCSCEECSSTTT
T ss_pred CCcCCCC-chhhhCCCccEEECcCCCC
Confidence 9999863 4445678899999999974
No 90
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.86 E-value=6.6e-23 Score=210.45 Aligned_cols=142 Identities=20% Similarity=0.208 Sum_probs=72.2
Q ss_pred CCCCcccccccCCCCcEEEEEcCCCCCCCcccCCCCCCCCEEECCCCCCccccChhhcCC--ccCcEEeccCCCCccCCC
Q 038612 62 NLCQWTGVTCGRRHQRVTELYLRNQSLGADIGYSSWSKLEKLSIAVNHLRGQLPASIGNL--SALQAFDVGENTLHGRIP 139 (678)
Q Consensus 62 ~~c~w~gv~c~~~~~~v~~l~l~~~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l--~~L~~L~ls~n~l~~~~p 139 (678)
-|.+|.++.|+. ..++.++++++.+. +..+..+ ++++.|++++|.+.+..+
T Consensus 35 vc~~W~~~~~~~--~~~~~l~l~~~~~~-------------------------~~~~~~~~~~~l~~L~l~~n~l~~~~~ 87 (336)
T 2ast_B 35 VCKRWYRLASDE--SLWQTLDLTGKNLH-------------------------PDVTGRLLSQGVIAFRCPRSFMDQPLA 87 (336)
T ss_dssp SCHHHHHHHTCS--TTSSEEECTTCBCC-------------------------HHHHHHHHHTTCSEEECTTCEECSCCC
T ss_pred HHHHHHHHhcCc--hhheeeccccccCC-------------------------HHHHHhhhhccceEEEcCCccccccch
Confidence 455798888753 23444555544333 2233333 455555555555554433
Q ss_pred ccCCCCCCCCEEEccccccccc-CcccccCCCCCcEEECCCCCCCccCChhhhcCCCCCCEEEcccC-cCCCC-CCccCc
Q 038612 140 ESLGQLRSLKFLNVEENNFSGM-VPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQN-NLTGP-IPHSLS 216 (678)
Q Consensus 140 ~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n-~l~~~-~~~~l~ 216 (678)
. +..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..|..+. .+++|++|++++| .+++. ++..+.
T Consensus 88 ~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~-~~~~L~~L~L~~~~~l~~~~l~~~~~ 165 (336)
T 2ast_B 88 E-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLS 165 (336)
T ss_dssp S-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHT-TCTTCSEEECTTCBSCCHHHHHHHHH
T ss_pred h-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHh-cCCCCCEEECCCCCCCCHHHHHHHHh
Confidence 3 33455555555555555433 444555555555555555555544444444 4555555555555 34421 333344
Q ss_pred CCCCCcEEeccCC-cce
Q 038612 217 NASNLIELNLGQN-HFT 232 (678)
Q Consensus 217 ~l~~L~~L~L~~n-~l~ 232 (678)
++++|++|++++| .++
T Consensus 166 ~~~~L~~L~l~~~~~l~ 182 (336)
T 2ast_B 166 SCSRLDELNLSWCFDFT 182 (336)
T ss_dssp HCTTCCEEECCCCTTCC
T ss_pred cCCCCCEEcCCCCCCcC
Confidence 5555555555555 444
No 91
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=5.3e-24 Score=222.83 Aligned_cols=111 Identities=17% Similarity=0.234 Sum_probs=68.2
Q ss_pred CcEEEccCcceec-----cCCccCcCCccccccccccceee----eccCcccCCCcccceeeccCcccccc----CCccc
Q 038612 300 MTIIDMGENKLSG-----TIPLGIGNLVNLNLFSLHLNQLI----GTIPHVIGSLKNLQLLYLYGNSLEGN----IPSSL 366 (678)
Q Consensus 300 L~~L~L~~n~l~~-----~~~~~l~~l~~L~~L~l~~n~~~----~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~ 366 (678)
|+.|++++|.+.. ..+..+..+++|+.|++++|.++ ..+|..+..+++|++|++++|.+.+. ++..+
T Consensus 189 L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l 268 (386)
T 2ca6_A 189 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAF 268 (386)
T ss_dssp CCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHH
T ss_pred cCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHH
Confidence 5555555555441 22334555666666666666664 44555666677777777777776654 34444
Q ss_pred --cCCCCCcEEeccCCccCc----cCCCCC-CCcCCCceEecCCCcccccc
Q 038612 367 --GNLTLLTKLALDFNNLQG----NIPSSL-GSCQNLMELIVSHNKLNGTL 410 (678)
Q Consensus 367 --~~l~~L~~L~L~~n~l~~----~~~~~~-~~l~~L~~L~l~~n~l~~~~ 410 (678)
+.+++|++|++++|.+.+ .+|..+ .++++|+.|++++|++.+..
T Consensus 269 ~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 269 SKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred hhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 336777777777777775 355555 44677777777777776544
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=3.5e-21 Score=186.95 Aligned_cols=197 Identities=16% Similarity=0.130 Sum_probs=136.2
Q ss_pred cCcEEEccCcceeccCCccCcCCccccccccccce-eeeccCcccCCCcccceeeccC-ccccccCCccccCCCCCcEEe
Q 038612 299 TMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQ-LIGTIPHVIGSLKNLQLLYLYG-NSLEGNIPSSLGNLTLLTKLA 376 (678)
Q Consensus 299 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~ 376 (678)
+++.|++++|++++..+..+..+++|+.|++++|+ +.+..+..|..+++|++|++++ |.+++..+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 47777777777776666667777777777777775 6655555677777777777776 777766556677777777777
Q ss_pred ccCCccCccCCCCCCCcCCCc---eEecCCC-ccccccCcccccccccce-EEEcCCCcccccCCccccCcccCCeeecc
Q 038612 377 LDFNNLQGNIPSSLGSCQNLM---ELIVSHN-KLNGTLPQQILEIRTLSF-QLDLSNNLLSGYLPFRVGNLKNLARLDIS 451 (678)
Q Consensus 377 L~~n~l~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~p~~~~~~~~l~~-~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 451 (678)
+++|.+.+ +|. +..+++|+ +|++++| .+.+..+..+..++.+ + .|++++|.++...+..+.. ++|++|+++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L-~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE-TLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSS-EEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcc-eeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence 77777765 444 66666776 7777777 6664444445666666 6 7777777777444444444 778888888
Q ss_pred cCc-ccccCCccccCC-CCCCEEECcCCccccccCccccCCCCCCEEECCCCc
Q 038612 452 MNH-FFGEIPATLSAC-TSLEYLYMQGNSFGGRIPLSLISLKSLKVLDLSRNN 502 (678)
Q Consensus 452 ~n~-~~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~ 502 (678)
+|+ +++..+..|..+ ++|++|++++|++++..+. .+++|+.|+++++.
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence 884 776666777788 8888888888888754333 56778888887663
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=1.6e-20 Score=189.46 Aligned_cols=173 Identities=27% Similarity=0.326 Sum_probs=106.2
Q ss_pred cCCCcccceeeccCccccccCCccccCCCCCcEEeccCCccCccCCCCCCCcCCCceEecCCCccccccCcccccccccc
Q 038612 342 IGSLKNLQLLYLYGNSLEGNIPSSLGNLTLLTKLALDFNNLQGNIPSSLGSCQNLMELIVSHNKLNGTLPQQILEIRTLS 421 (678)
Q Consensus 342 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~ 421 (678)
+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+. ..+..+++|+.|++++|++.+ ++. +..++.+
T Consensus 59 ~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L- 131 (308)
T 1h6u_A 59 VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITD-VTP-LAGLSNL- 131 (308)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCC-CGG-GTTCTTC-
T ss_pred hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECCCCCCCC-chh-hcCCCCC-
Confidence 4444555555555555443222 44555555555555554432 234455555555555555542 221 4444444
Q ss_pred eEEEcCCCcccccCCccccCcccCCeeecccCcccccCCccccCCCCCCEEECcCCccccccCccccCCCCCCEEECCCC
Q 038612 422 FQLDLSNNLLSGYLPFRVGNLKNLARLDISMNHFFGEIPATLSACTSLEYLYMQGNSFGGRIPLSLISLKSLKVLDLSRN 501 (678)
Q Consensus 422 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n 501 (678)
+.|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|++|++++|++++..+ +..+++|+.|++++|
T Consensus 132 ~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N 205 (308)
T 1h6u_A 132 QVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNN 205 (308)
T ss_dssp CEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTS
T ss_pred CEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCC
Confidence 455555555554333 5667778888888887774333 7778888888888888875543 677888888888888
Q ss_pred cccccCCccCCCCCCCCEEeCCcCccee
Q 038612 502 NLSGKIPEYLENLPFLQYLDLSYNHFEG 529 (678)
Q Consensus 502 ~l~~~~p~~l~~l~~L~~L~l~~n~l~~ 529 (678)
++++..+ +..+++|+.|++++|++++
T Consensus 206 ~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 206 QISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred ccCcccc--ccCCCCCCEEEccCCeeec
Confidence 8886543 7788888888888888764
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=2.4e-20 Score=188.17 Aligned_cols=150 Identities=19% Similarity=0.316 Sum_probs=90.0
Q ss_pred CCCCCCCCEEECCCCCCccccChhhcCCccCcEEeccCCCCccCCCccCCCCCCCCEEEcccccccccCcccccCCCCCc
Q 038612 94 YSSWSKLEKLSIAVNHLRGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSLE 173 (678)
Q Consensus 94 ~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 173 (678)
...+++|++|++++|.+.. ++ .+..+++|++|++++|.+.+. +. +..+++|++|++++|.+++. ..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKNV--SAIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence 3445667777777776653 33 466677777777777776643 33 66777777777777776642 2566667777
Q ss_pred EEECCCCCCCccCChhhhcCCCCCCEEEcccCcCCCCCCccCcCCCCCcEEeccCCcceeccCCCCCCCCCCCeEEcccC
Q 038612 174 MIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLIELNLGQNHFTGKVSIDFNGLSDLAWLSFEAN 253 (678)
Q Consensus 174 ~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 253 (678)
+|++++|.+++ ++. +. .+++|++|++++|.+++..+ +..+++|+.|++++|++++..+ +..+++|+.|++++|
T Consensus 111 ~L~l~~n~l~~-~~~-l~-~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n 183 (308)
T 1h6u_A 111 TLDLTSTQITD-VTP-LA-GLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDN 183 (308)
T ss_dssp EEECTTSCCCC-CGG-GT-TCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred EEECCCCCCCC-chh-hc-CCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCC
Confidence 77777776664 232 33 66666667666666664322 5666666666666666654332 444444444444444
Q ss_pred ccc
Q 038612 254 NLG 256 (678)
Q Consensus 254 ~l~ 256 (678)
.+.
T Consensus 184 ~l~ 186 (308)
T 1h6u_A 184 KIS 186 (308)
T ss_dssp CCC
T ss_pred ccC
Confidence 443
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=3e-20 Score=191.22 Aligned_cols=244 Identities=19% Similarity=0.139 Sum_probs=158.2
Q ss_pred cEEeccCCCCccCCCccCCCCCCCCEEEcccccccccCcccccCCCCCcEEECCCCCCCccCChhhhcCCCCCCE-EEcc
Q 038612 125 QAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKS-LIVA 203 (678)
Q Consensus 125 ~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~-L~l~ 203 (678)
++++.+++.++ .+|..+. +++++|+|++|+|+...+.+|.++++|++|+|++|++.+.+|...+..++++++ +.++
T Consensus 12 ~~v~C~~~~Lt-~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 56777888777 6676663 578888888888886555678888888888888888876777766657777665 5566
Q ss_pred cCcCCCCCCccCcCCCCCcEEeccCCcceeccCCCCCCCCCCCeEEcccCcccccCCCCcccccccCCCCCCcEEEcccC
Q 038612 204 QNNLTGPIPHSLSNASNLIELNLGQNHFTGKVSIDFNGLSDLAWLSFEANNLGAEASNDLDFVFSLTNCSKLEWLELRKN 283 (678)
Q Consensus 204 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n 283 (678)
.|+++...|..|..+++|++|++++|++....+..+....++..+++.++ +
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~-----------------------------~ 139 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN-----------------------------I 139 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESC-----------------------------T
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccc-----------------------------c
Confidence 67887777777888888888888888877655554444444444444321 2
Q ss_pred CCCcccChhHhhccccCcEEEccCcceeccCCccCcCCcccccccccc-ceeeeccCcccCCCcccceeeccCccccccC
Q 038612 284 QFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHL-NQLIGTIPHVIGSLKNLQLLYLYGNSLEGNI 362 (678)
Q Consensus 284 ~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 362 (678)
.+....+..+......++.|++++|+++. ++.......+|+.+++.+ |.+....+..|+.+++|++|++++|+++...
T Consensus 140 ~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp 218 (350)
T 4ay9_X 140 NIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP 218 (350)
T ss_dssp TCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCC
T ss_pred ccccccccchhhcchhhhhhccccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccC
Confidence 22222222333333346667777777663 333333455677777764 4454444456778888888888888887443
Q ss_pred CccccCCCCCcEEeccCCccCccCCCCCCCcCCCceEecCCCc
Q 038612 363 PSSLGNLTLLTKLALDFNNLQGNIPSSLGSCQNLMELIVSHNK 405 (678)
Q Consensus 363 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 405 (678)
+.. +.+|+.|.+.++.-...+| .+.++++|+.+++.++.
T Consensus 219 ~~~---~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 219 SYG---LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYPS 257 (350)
T ss_dssp SSS---CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHH
T ss_pred hhh---hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCCc
Confidence 333 4555566655554444555 36777888888876553
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=3.7e-20 Score=175.60 Aligned_cols=152 Identities=21% Similarity=0.257 Sum_probs=80.3
Q ss_pred CCcccccccCCCCcEEEEEcCCCCCCCcccCCCCCCCCEEECCCCCCccccChhhcCCccCcEEeccCCCCccCCCccCC
Q 038612 64 CQWTGVTCGRRHQRVTELYLRNQSLGADIGYSSWSKLEKLSIAVNHLRGQLPASIGNLSALQAFDVGENTLHGRIPESLG 143 (678)
Q Consensus 64 c~w~gv~c~~~~~~v~~l~l~~~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~ 143 (678)
|.|.++.|... .+... ...-.++|++|++++|.+++..+..+..+++|++|++++|.+++..+..|.
T Consensus 7 C~~~~v~c~~~------------~l~~~-p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 73 (208)
T 2o6s_A 7 CSGTTVECYSQ------------GRTSV-PTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFN 73 (208)
T ss_dssp EETTEEECCSS------------CCSSC-CSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT
T ss_pred ECCCEEEecCC------------CccCC-CCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcC
Confidence 68888888632 11111 112234566666666666655555556666666666666666644444455
Q ss_pred CCCCCCEEEcccccccccCcccccCCCCCcEEECCCCCCCccCChhhhcCCCCCCEEEcccCcCCCCCCccCcCCCCCcE
Q 038612 144 QLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLIE 223 (678)
Q Consensus 144 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 223 (678)
.+++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+. .+++|++|++++|.+++..+..+.++++|+.
T Consensus 74 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 152 (208)
T 2o6s_A 74 KLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFD-KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQY 152 (208)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred CCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhc-cCCcCCEEECCCCccceeCHHHhccCCCccE
Confidence 666666666666666544444455555555555555555532222222 4455555555555554433333444444444
Q ss_pred EeccCC
Q 038612 224 LNLGQN 229 (678)
Q Consensus 224 L~L~~n 229 (678)
|++++|
T Consensus 153 L~l~~N 158 (208)
T 2o6s_A 153 IWLHDN 158 (208)
T ss_dssp EECCSC
T ss_pred EEecCC
Confidence 444444
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=2.9e-19 Score=183.82 Aligned_cols=241 Identities=17% Similarity=0.120 Sum_probs=140.5
Q ss_pred cEEEcccCCCCcccChhHhhccccCcEEEccCcceeccCCccCcCCccccccccccceeeeccC-cccCCCcccce-eec
Q 038612 276 EWLELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLIGTIP-HVIGSLKNLQL-LYL 353 (678)
Q Consensus 276 ~~L~L~~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~-L~l 353 (678)
++++.++++++ .+|..+ +.+++.|+|++|+++...+..|.++++|+.|+|++|++.+.+| .+|.+++++++ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 45566666655 445432 3457777777777775555567777777777777777655444 45666766654 445
Q ss_pred cCccccccCCccccCCCCCcEEeccCCccCccCCCCCCCcCCCceEecCCC-ccccccCcccccccccceEEEcCCCccc
Q 038612 354 YGNSLEGNIPSSLGNLTLLTKLALDFNNLQGNIPSSLGSCQNLMELIVSHN-KLNGTLPQQILEIRTLSFQLDLSNNLLS 432 (678)
Q Consensus 354 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~p~~~~~~~~l~~~L~l~~n~l~ 432 (678)
.+|++....|..|..+++|++|++++|++....+..+....++..|++.++ ++....+..+..+...++.|++++|.++
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 566777666677777777777777777777655555656666667776543 4442222233344333356666666666
Q ss_pred ccCCccccCcccCCeeeccc-CcccccCCccccCCCCCCEEECcCCccccccCccccCCCCCCEEECCCCcccccCCccC
Q 038612 433 GYLPFRVGNLKNLARLDISM-NHFFGEIPATLSACTSLEYLYMQGNSFGGRIPLSLISLKSLKVLDLSRNNLSGKIPEYL 511 (678)
Q Consensus 433 ~~~~~~~~~l~~L~~L~Ls~-n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l 511 (678)
...+..+ ...+|++|++++ |.++...+..|..+++|++|+|++|+++...+.. +.+|+.|.+.++.--..+|. +
T Consensus 168 ~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP~-l 242 (350)
T 4ay9_X 168 EIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLPT-L 242 (350)
T ss_dssp EECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCCC-T
T ss_pred CCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCCC-c
Confidence 4433333 345666666654 3444333345566666666666666666443333 33455555444433334552 5
Q ss_pred CCCCCCCEEeCCcC
Q 038612 512 ENLPFLQYLDLSYN 525 (678)
Q Consensus 512 ~~l~~L~~L~l~~n 525 (678)
..+++|+.+++.++
T Consensus 243 ~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 243 EKLVALMEASLTYP 256 (350)
T ss_dssp TTCCSCCEEECSCH
T ss_pred hhCcChhhCcCCCC
Confidence 66666666666543
No 98
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=3e-19 Score=193.07 Aligned_cols=215 Identities=25% Similarity=0.300 Sum_probs=124.2
Q ss_pred CCCCCCCCCCC-----Ccccc-cccCCCCcEEEEEcCCCCCCCcccCCCCCCCCEEECCCCCCccccChhhcCCccCcEE
Q 038612 54 TSSWDTSVNLC-----QWTGV-TCGRRHQRVTELYLRNQSLGADIGYSSWSKLEKLSIAVNHLRGQLPASIGNLSALQAF 127 (678)
Q Consensus 54 ~~~w~~~~~~c-----~w~gv-~c~~~~~~v~~l~l~~~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L 127 (678)
+.+|....++| .|.++ .|.. .+++.++++++.+.+.+. .-.++|++|+|++|.++ .+| ..+++|++|
T Consensus 33 l~~W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~lp~-~l~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L 105 (571)
T 3cvr_A 33 WDKWEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSSLPD-NLPPQITVLEITQNALI-SLP---ELPASLEYL 105 (571)
T ss_dssp HHHHHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSCCCS-CCCTTCSEEECCSSCCS-CCC---CCCTTCCEE
T ss_pred HHHHhccCCccccccchhhhcccccc--CCccEEEeCCCCCCccCH-hHcCCCCEEECcCCCCc-ccc---cccCCCCEE
Confidence 34565556677 69998 6752 467777777776665332 11356777777777666 444 345667777
Q ss_pred eccCCCCccCCCccCCCCCCCCEEEcccccccccCcccccCCCCCcEEECCCCCCCccCChhhhcCCCCCCEEEcccCcC
Q 038612 128 DVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNL 207 (678)
Q Consensus 128 ~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l 207 (678)
++++|.+++ +|. +.+ +|++|+|++|.+++ +|. .+++|++|++++|.+++ +|. .+++|++|++++|.+
T Consensus 106 ~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~L 172 (571)
T 3cvr_A 106 DACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE----LPTSLEVLSVRNNQL 172 (571)
T ss_dssp ECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCC
T ss_pred EccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC----cCCCcCEEECCCCCC
Confidence 777776664 555 544 67777777776664 444 46666677776666664 444 356666666666666
Q ss_pred CCCCCccCcCCCCCcEEeccCCcceeccCCCCCCCCCCCeEEcccCcccccCCCCcccccccCCCCCCcEEEcccCCCCc
Q 038612 208 TGPIPHSLSNASNLIELNLGQNHFTGKVSIDFNGLSDLAWLSFEANNLGAEASNDLDFVFSLTNCSKLEWLELRKNQFGG 287 (678)
Q Consensus 208 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~ 287 (678)
++ +|. +. ++|+.|++++|+++ .+|. +.. +| ....+.|+.|+|++|.++
T Consensus 173 ~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L-----------------------~~~~~~L~~L~Ls~N~l~- 220 (571)
T 3cvr_A 173 TF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RN-----------------------HHSEETEIFFRCRENRIT- 220 (571)
T ss_dssp SC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC---------------------------------CCEEEECCSSCCC-
T ss_pred CC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hh-----------------------hcccccceEEecCCCcce-
Confidence 64 444 44 66666666666665 2332 322 23 011122366666666665
Q ss_pred ccChhHhhccccCcEEEccCcceeccCCccCcCC
Q 038612 288 NLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNL 321 (678)
Q Consensus 288 ~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l 321 (678)
.+|..+..++. |+.|++++|.+++.+|..+..+
T Consensus 221 ~lp~~l~~l~~-L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 221 HIPENILSLDP-TCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CCCGGGGGSCT-TEEEECCSSSCCHHHHHHHHHH
T ss_pred ecCHHHhcCCC-CCEEEeeCCcCCCcCHHHHHHh
Confidence 45555555443 6666666666666555554443
No 99
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=1.3e-18 Score=167.14 Aligned_cols=164 Identities=22% Similarity=0.246 Sum_probs=118.9
Q ss_pred CCCCCCCCCCCcccccccCCCCcEEEEEcCCCCCCCcccCCCCCCCCEEECCCCCCccccChhhcCCccCcEEeccCCCC
Q 038612 55 SSWDTSVNLCQWTGVTCGRRHQRVTELYLRNQSLGADIGYSSWSKLEKLSIAVNHLRGQLPASIGNLSALQAFDVGENTL 134 (678)
Q Consensus 55 ~~w~~~~~~c~w~gv~c~~~~~~v~~l~l~~~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ls~n~l 134 (678)
..|+.+...|.|.+|.|... + +...+ ..-.++|++|+|++|.+.+..|..|..+++|++|++++|.+
T Consensus 10 ~~~~~~~~~Cs~~~v~c~~~--~----------l~~ip-~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l 76 (229)
T 3e6j_A 10 SAACPSQCSCSGTTVDCRSK--R----------HASVP-AGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL 76 (229)
T ss_dssp -CCCCTTCEEETTEEECTTS--C----------CSSCC-SCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred hccCCCCCEEeCCEeEccCC--C----------cCccC-CCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC
Confidence 35666778899999999642 1 21111 11236788888888888877777888888888888888888
Q ss_pred ccCCCccCCCCCCCCEEEcccccccccCcccccCCCCCcEEECCCCCCCccCChhhhcCCCCCCEEEcccCcCCCCCCcc
Q 038612 135 HGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHS 214 (678)
Q Consensus 135 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~ 214 (678)
....+..|..+++|++|+|++|.+++..+..|..+++|++|++++|.++ .+|..+. .+++|++|++++|.+++..+..
T Consensus 77 ~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~L~~N~l~~~~~~~ 154 (229)
T 3e6j_A 77 GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIE-RLTHLTHLALDQNQLKSIPHGA 154 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGG-GCTTCSEEECCSSCCCCCCTTT
T ss_pred CCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccc-cCCCCCEEECCCCcCCccCHHH
Confidence 7555566778888888888888887666666777888888888888777 6676665 7777777777777777665566
Q ss_pred CcCCCCCcEEeccCCccee
Q 038612 215 LSNASNLIELNLGQNHFTG 233 (678)
Q Consensus 215 l~~l~~L~~L~L~~n~l~~ 233 (678)
+..+++|+.|++++|.+..
T Consensus 155 ~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 155 FDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp TTTCTTCCEEECTTSCBCT
T ss_pred HhCCCCCCEEEeeCCCccC
Confidence 7777777777777776653
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.79 E-value=1.1e-18 Score=165.50 Aligned_cols=149 Identities=21% Similarity=0.267 Sum_probs=83.8
Q ss_pred CEEECCCCCCccccChhhcCCccCcEEeccCCCCccCCCccCCCCCCCCEEEcccccccccCcccccCCCCCcEEECCCC
Q 038612 101 EKLSIAVNHLRGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFLPAN 180 (678)
Q Consensus 101 ~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 180 (678)
+.++.+++.++ .+|..+ .++|++|++++|.+++..+..|.++++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 45566666555 233332 346666666666666555555666666666666666666554555566666666666666
Q ss_pred CCCccCChhhhcCCCCCCEEEcccCcCCCCCCccCcCCCCCcEEeccCCcceeccCCCCCCCCCCCeEEcccC
Q 038612 181 RLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLIELNLGQNHFTGKVSIDFNGLSDLAWLSFEAN 253 (678)
Q Consensus 181 ~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 253 (678)
.+++. |...+..+++|++|++++|.+++..+..+.++++|++|++++|++++..+..+..+++|+.|++++|
T Consensus 87 ~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 87 QLQSL-PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp CCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred cCCcc-CHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence 66633 3332225666666666666666554445566666666666666655444443444444444444444
No 101
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=5.2e-19 Score=168.77 Aligned_cols=138 Identities=19% Similarity=0.193 Sum_probs=107.1
Q ss_pred CceEecCCCccccccCc-ccccccccceEEEcCCCcccccCCccccCcccCCeeecccCcccccCCccccCCCCCCEEEC
Q 038612 396 LMELIVSHNKLNGTLPQ-QILEIRTLSFQLDLSNNLLSGYLPFRVGNLKNLARLDISMNHFFGEIPATLSACTSLEYLYM 474 (678)
Q Consensus 396 L~~L~l~~n~l~~~~p~-~~~~~~~l~~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L 474 (678)
+++|++++|++.+..+. .+..++.+ +.|++++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|+|
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L-~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQL-RKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTC-CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred CCEEEcCCCcCCccCchhhhccCCCC-CEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 44555555555433222 23444444 55666666666556667788889999999999998777778889999999999
Q ss_pred cCCccccccCccccCCCCCCEEECCCCcccccCCccCCCCCCCCEEeCCcCcceeeCCCC
Q 038612 475 QGNSFGGRIPLSLISLKSLKVLDLSRNNLSGKIPEYLENLPFLQYLDLSYNHFEGQVPAK 534 (678)
Q Consensus 475 ~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~ 534 (678)
++|++++..|..|..+++|++|+|++|++++..|..|..+++|+.|++++|++.+.++..
T Consensus 113 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~ 172 (220)
T 2v70_A 113 RSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLA 172 (220)
T ss_dssp TTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGH
T ss_pred CCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchH
Confidence 999999888888999999999999999999888899999999999999999999877643
No 102
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.78 E-value=1.2e-18 Score=188.41 Aligned_cols=187 Identities=27% Similarity=0.360 Sum_probs=134.0
Q ss_pred cCcEEEccCcceeccCCccCcCCccccccccccceeeeccCcccCCCcccceeeccCccccccCCccccCCCCCcEEecc
Q 038612 299 TMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLIGTIPHVIGSLKNLQLLYLYGNSLEGNIPSSLGNLTLLTKLALD 378 (678)
Q Consensus 299 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 378 (678)
+++.|++++|.+++ +|..+ +++|+.|++++|++. .+| ..+++|++|++++|.+++ +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 48888888888876 66555 367888888888887 455 456788888888888876 565 554 88888888
Q ss_pred CCccCccCCCCCCCcCCCceEecCCCccccccCcccccccccceEEEcCCCcccccCCccccCcccCCeeecccCccccc
Q 038612 379 FNNLQGNIPSSLGSCQNLMELIVSHNKLNGTLPQQILEIRTLSFQLDLSNNLLSGYLPFRVGNLKNLARLDISMNHFFGE 458 (678)
Q Consensus 379 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~ 458 (678)
+|.+++ +|. .+++|+.|++++|++.+ +|. .++.+ +.|++++|.+++ +|. +. ++|+.|+|++|+++ .
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L-~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~ 194 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSL-EVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-S 194 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTC-CEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-S
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCc-CEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-c
Confidence 888886 554 57788888888888874 565 34455 778888888776 444 44 77888888888877 5
Q ss_pred CCccccCCCCC-------CEEECcCCccccccCccccCCCCCCEEECCCCcccccCCccCCCC
Q 038612 459 IPATLSACTSL-------EYLYMQGNSFGGRIPLSLISLKSLKVLDLSRNNLSGKIPEYLENL 514 (678)
Q Consensus 459 ~~~~~~~l~~L-------~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l 514 (678)
+|. +.. +| +.|+|++|+++ .+|..+..+++|+.|+|++|.+++.+|..+..+
T Consensus 195 lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 195 LPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred hhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 555 443 56 77888888776 456666667788888888888877777665543
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=9.1e-19 Score=167.09 Aligned_cols=156 Identities=21% Similarity=0.261 Sum_probs=110.1
Q ss_pred ceeeccCccccccCCccccCCCCCcEEeccCCccCccCCCCCCCcCCCceEecCCCccccccCcccccccccceEEEcCC
Q 038612 349 QLLYLYGNSLEGNIPSSLGNLTLLTKLALDFNNLQGNIPSSLGSCQNLMELIVSHNKLNGTLPQQILEIRTLSFQLDLSN 428 (678)
Q Consensus 349 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~L~l~~ 428 (678)
+.++++++.++ .+|..+. ++|++|++++|.+.+..+..|..+++|+.|++++|++.
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~--------------------- 69 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS--------------------- 69 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCC---------------------
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCC---------------------
Confidence 45566666555 3444332 45566666666665554445555555555555555544
Q ss_pred CcccccCCccccCcccCCeeecccCcccccCCccccCCCCCCEEECcCCccccccCccccCCCCCCEEECCCCcccccCC
Q 038612 429 NLLSGYLPFRVGNLKNLARLDISMNHFFGEIPATLSACTSLEYLYMQGNSFGGRIPLSLISLKSLKVLDLSRNNLSGKIP 508 (678)
Q Consensus 429 n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p 508 (678)
+..|..|..+++|++|+|++|+++...+..|..+++|++|+|++|++++..+..|..+++|+.|+|++|++++..+
T Consensus 70 ----~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 145 (220)
T 2v9t_B 70 ----ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK 145 (220)
T ss_dssp ----EECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred ----CcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH
Confidence 4455566777788888888888876555667788888888888888888778888888888888888888887777
Q ss_pred ccCCCCCCCCEEeCCcCcceeeCC
Q 038612 509 EYLENLPFLQYLDLSYNHFEGQVP 532 (678)
Q Consensus 509 ~~l~~l~~L~~L~l~~n~l~~~~p 532 (678)
..+..+++|+.|++++|++.+...
T Consensus 146 ~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 146 GTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp TTTTTCTTCCEEECCSSCEECSGG
T ss_pred HHHhCCCCCCEEEeCCCCcCCCCc
Confidence 778888888888888888887654
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=2.8e-18 Score=171.36 Aligned_cols=181 Identities=23% Similarity=0.340 Sum_probs=112.6
Q ss_pred CCCCCCcccCCCCCCCCEEECCCCCCccccChhhcCCccCcEEeccCCCCccCCCccCCCCCCCCEEEcccccccccCcc
Q 038612 85 NQSLGADIGYSSWSKLEKLSIAVNHLRGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPV 164 (678)
Q Consensus 85 ~~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~ 164 (678)
...+.+...+..+++|+.|++++|.+... ..+..+++|++|++++|.+++..+ +.++++|++|++++|.+++ + .
T Consensus 33 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~ 106 (291)
T 1h6t_A 33 KKSVTDAVTQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-S 106 (291)
T ss_dssp CSCTTSEECHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-G
T ss_pred CCCcccccchhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-h
Confidence 33333333445566777777777776643 246677777777777777774433 7777777777777777764 2 2
Q ss_pred cccCCCCCcEEECCCCCCCccCChhhhcCCCCCCEEEcccCcCCCCCCccCcCCCCCcEEeccCCcceeccCCCCCCCCC
Q 038612 165 SIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLIELNLGQNHFTGKVSIDFNGLSD 244 (678)
Q Consensus 165 ~~~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 244 (678)
.+..+++|++|++++|.+++. ..+. .+++|++|++++|.+++. ..+..+++|+.|++++|++++..+ +..+++
T Consensus 107 ~l~~l~~L~~L~L~~n~i~~~--~~l~-~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~ 179 (291)
T 1h6t_A 107 SLKDLKKLKSLSLEHNGISDI--NGLV-HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTK 179 (291)
T ss_dssp GGTTCTTCCEEECTTSCCCCC--GGGG-GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTT
T ss_pred hhccCCCCCEEECCCCcCCCC--hhhc-CCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCc
Confidence 367777777777777777642 2333 667777777777777653 456677777777777777665444 556666
Q ss_pred CCeEEcccCcccccCCCCcccccccCCCCCCcEEEcccCCCC
Q 038612 245 LAWLSFEANNLGAEASNDLDFVFSLTNCSKLEWLELRKNQFG 286 (678)
Q Consensus 245 L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~ 286 (678)
|+.|++++|.+... ..+..+++|+.|++++|.+.
T Consensus 180 L~~L~L~~N~i~~l--------~~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 180 LQNLYLSKNHISDL--------RALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp CCEEECCSSCCCBC--------GGGTTCTTCSEEEEEEEEEE
T ss_pred cCEEECCCCcCCCC--------hhhccCCCCCEEECcCCccc
Confidence 66666666655432 12445555555555555443
No 105
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=6.2e-18 Score=161.29 Aligned_cols=133 Identities=19% Similarity=0.285 Sum_probs=70.4
Q ss_pred ccCcEEeccCCCCccCCCccCCCCCCCCEEEcccccccccCcccccCCCCCcEEECCCCCCCccCChhhhcCCCCCCEEE
Q 038612 122 SALQAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLI 201 (678)
Q Consensus 122 ~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~ 201 (678)
++|+.|++++|.+++..+..|..+++|++|+|++|.+++..|..|.++++|++|+|++|.++ .+|..++..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~ 110 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLL 110 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC-ccCHhHccCCCCCCEEE
Confidence 34555555555555444444555555555555555555444555555555555555555555 33333333555555555
Q ss_pred cccCcCCCCCCccCcCCCCCcEEeccCCcceeccCCCCCCCCCCCeEEcccCcc
Q 038612 202 VAQNNLTGPIPHSLSNASNLIELNLGQNHFTGKVSIDFNGLSDLAWLSFEANNL 255 (678)
Q Consensus 202 l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 255 (678)
+++|.+++..|..|..+++|+.|++++|++++..+..|..+++|+.|++++|.+
T Consensus 111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence 555555555555555566666666666665555544455555555555544444
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=2.8e-18 Score=177.18 Aligned_cols=179 Identities=28% Similarity=0.266 Sum_probs=113.5
Q ss_pred eeeccCccccccCCccccCCCCCcEEeccCCccCccCCCCCC-CcCCCceEecCCCccccccCcccccccccceEEEcCC
Q 038612 350 LLYLYGNSLEGNIPSSLGNLTLLTKLALDFNNLQGNIPSSLG-SCQNLMELIVSHNKLNGTLPQQILEIRTLSFQLDLSN 428 (678)
Q Consensus 350 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~L~l~~ 428 (678)
.++++++.++. +|..+. +.++.|+|++|.+++..+..+. .+++|+.|++++|++.+..+..+..++.+ +.|+|++
T Consensus 22 ~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L-~~L~Ls~ 97 (361)
T 2xot_A 22 ILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNL-RYLDLSS 97 (361)
T ss_dssp EEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTC-CEEECCS
T ss_pred EEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCC-CEEECCC
Confidence 45555555442 333322 2355555555555554444444 55555555555555554444445555555 5556666
Q ss_pred CcccccCCccccCcccCCeeecccCcccccCCccccCCCCCCEEECcCCccccccCccc---cCCCCCCEEECCCCcccc
Q 038612 429 NLLSGYLPFRVGNLKNLARLDISMNHFFGEIPATLSACTSLEYLYMQGNSFGGRIPLSL---ISLKSLKVLDLSRNNLSG 505 (678)
Q Consensus 429 n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~ls~n~l~~ 505 (678)
|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..+ ..+++|+.|+|++|++++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 66555555567777888888888888877777778888888888888888876555445 567888888888888886
Q ss_pred cCCccCCCCCC--CCEEeCCcCcceeeCC
Q 038612 506 KIPEYLENLPF--LQYLDLSYNHFEGQVP 532 (678)
Q Consensus 506 ~~p~~l~~l~~--L~~L~l~~n~l~~~~p 532 (678)
..+..+..++. ++.|++++|++.+...
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~C~C~ 206 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLECDCK 206 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred cCHHHhhhccHhhcceEEecCCCccCCcC
Confidence 65566666665 4778888888876543
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=1.2e-17 Score=166.82 Aligned_cols=171 Identities=24% Similarity=0.396 Sum_probs=150.4
Q ss_pred CcEEEEEcCCCCCCCcccCCCCCCCCEEECCCCCCccccChhhcCCccCcEEeccCCCCccCCCccCCCCCCCCEEEccc
Q 038612 76 QRVTELYLRNQSLGADIGYSSWSKLEKLSIAVNHLRGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVEE 155 (678)
Q Consensus 76 ~~v~~l~l~~~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~ 155 (678)
.+++.++++++.+.....+..+++|++|++++|.+++..+ +..+++|++|++++|.+++ +| .+..+++|++|++++
T Consensus 46 ~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~ 121 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEH 121 (291)
T ss_dssp HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTT
T ss_pred CcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCC
Confidence 5788999999999888888999999999999999987554 9999999999999999985 34 499999999999999
Q ss_pred ccccccCcccccCCCCCcEEECCCCCCCccCChhhhcCCCCCCEEEcccCcCCCCCCccCcCCCCCcEEeccCCcceecc
Q 038612 156 NNFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLIELNLGQNHFTGKV 235 (678)
Q Consensus 156 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~ 235 (678)
|.+++. ..+..+++|++|++++|.+++. ..+. .+++|++|++++|.+++..+ +..+++|+.|++++|.+++.
T Consensus 122 n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~-~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l- 193 (291)
T 1h6t_A 122 NGISDI--NGLVHLPQLESLYLGNNKITDI--TVLS-RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL- 193 (291)
T ss_dssp SCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGG-GCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-
T ss_pred CcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhc-cCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCC-
Confidence 999864 5788999999999999999864 4454 89999999999999996544 99999999999999999865
Q ss_pred CCCCCCCCCCCeEEcccCcccccC
Q 038612 236 SIDFNGLSDLAWLSFEANNLGAEA 259 (678)
Q Consensus 236 ~~~~~~l~~L~~L~l~~n~l~~~~ 259 (678)
+ .+..+++|+.|++++|.+....
T Consensus 194 ~-~l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 194 R-ALAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp G-GGTTCTTCSEEEEEEEEEECCC
T ss_pred h-hhccCCCCCEEECcCCcccCCc
Confidence 3 4899999999999999887643
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.75 E-value=2.8e-17 Score=156.76 Aligned_cols=151 Identities=17% Similarity=0.168 Sum_probs=84.4
Q ss_pred EEEcCCCCCCCcccCCCCCCCCEEECCCCCCccccC-hhhcCCccCcEEeccCCCCccCCCccCCCCCCCCEEEcccccc
Q 038612 80 ELYLRNQSLGADIGYSSWSKLEKLSIAVNHLRGQLP-ASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVEENNF 158 (678)
Q Consensus 80 ~l~l~~~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~~-~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l 158 (678)
.++++++.++..+. .-.+.+++|++++|.+++..+ ..|..+++|++|++++|.+++..+..|.++++|++|+|++|.+
T Consensus 15 ~l~~s~n~l~~iP~-~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l 93 (220)
T 2v70_A 15 TVDCSNQKLNKIPE-HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL 93 (220)
T ss_dssp EEECCSSCCSSCCS-CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EeEeCCCCcccCcc-CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCcc
Confidence 34555555543221 112345666666666665533 3355666666666666666655555566666666666666666
Q ss_pred cccCcccccCCCCCcEEECCCCCCCccCChhhhcCCCCCCEEEcccCcCCCCCCccCcCCCCCcEEeccCCcce
Q 038612 159 SGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLIELNLGQNHFT 232 (678)
Q Consensus 159 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 232 (678)
++..+..|.++++|++|++++|.+++..|..+. .+++|++|++++|.+++..|..|..+++|+.|++++|.+.
T Consensus 94 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 94 ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFI-GLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCGGGGTTCSSCCEEECTTSCCCCBCTTSST-TCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CccCHhHhcCCcCCCEEECCCCcCCeECHhHcC-CCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 655555566666666666666665544444443 5555555555555555555555555555555555555554
No 109
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=2.8e-17 Score=157.89 Aligned_cols=156 Identities=22% Similarity=0.201 Sum_probs=110.9
Q ss_pred cceeeccCccccccCCccccCCCCCcEEeccCCccCccCCCCCCCcCCCceEecCCCccccccCcccccccccceEEEcC
Q 038612 348 LQLLYLYGNSLEGNIPSSLGNLTLLTKLALDFNNLQGNIPSSLGSCQNLMELIVSHNKLNGTLPQQILEIRTLSFQLDLS 427 (678)
Q Consensus 348 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~L~l~ 427 (678)
.+.++.+++.+. .+|..+. ++|++|++++|.+.+..|..|..+++|++|++++|++.
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-------------------- 77 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-------------------- 77 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--------------------
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC--------------------
Confidence 456677666665 3444333 66777777777776666666666666666666666654
Q ss_pred CCcccccCCccccCcccCCeeecccCcccccCCccccCCCCCCEEECcCCccccccCccccCCCCCCEEECCCCcccccC
Q 038612 428 NNLLSGYLPFRVGNLKNLARLDISMNHFFGEIPATLSACTSLEYLYMQGNSFGGRIPLSLISLKSLKVLDLSRNNLSGKI 507 (678)
Q Consensus 428 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~ 507 (678)
...+..+..+++|++|+|++|++++..+..|..+++|++|+|++|+++ .+|..+..+++|+.|++++|++++..
T Consensus 78 -----~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~ 151 (229)
T 3e6j_A 78 -----ALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIP 151 (229)
T ss_dssp -----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCC
T ss_pred -----CcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccC
Confidence 233334566677888888888887666666777888888888888887 56777788888888888888888766
Q ss_pred CccCCCCCCCCEEeCCcCcceeeCC
Q 038612 508 PEYLENLPFLQYLDLSYNHFEGQVP 532 (678)
Q Consensus 508 p~~l~~l~~L~~L~l~~n~l~~~~p 532 (678)
+..+..+++|+.|++++|++.+..+
T Consensus 152 ~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 152 HGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp TTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred HHHHhCCCCCCEEEeeCCCccCCcc
Confidence 6778888888888888888877655
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=1.7e-17 Score=181.47 Aligned_cols=168 Identities=24% Similarity=0.393 Sum_probs=85.5
Q ss_pred cEEEEEcCCCCCCCcccCCCCCCCCEEECCCCCCccccChhhcCCccCcEEeccCCCCccCCCccCCCCCCCCEEEcccc
Q 038612 77 RVTELYLRNQSLGADIGYSSWSKLEKLSIAVNHLRGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVEEN 156 (678)
Q Consensus 77 ~v~~l~l~~~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n 156 (678)
.++.|+++++.+...+.+..+++|+.|+|++|.+.+..+ +..+++|+.|+|++|.+.+ +| .+..+++|++|+|++|
T Consensus 44 ~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N 119 (605)
T 1m9s_A 44 SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHN 119 (605)
T ss_dssp TCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTS
T ss_pred CCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCC
Confidence 444455555555544445555555555555555554332 5555555555555555542 22 4555555555555555
Q ss_pred cccccCcccccCCCCCcEEECCCCCCCccCChhhhcCCCCCCEEEcccCcCCCCCCccCcCCCCCcEEeccCCcceeccC
Q 038612 157 NFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLIELNLGQNHFTGKVS 236 (678)
Q Consensus 157 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~ 236 (678)
.+++. ..+..+++|+.|+|++|.+++. ..+. .+++|+.|+|++|.+++..| +..+++|+.|+|++|++++.
T Consensus 120 ~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~-~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-- 190 (605)
T 1m9s_A 120 GISDI--NGLVHLPQLESLYLGNNKITDI--TVLS-RLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-- 190 (605)
T ss_dssp CCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGG-SCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--
T ss_pred CCCCC--ccccCCCccCEEECCCCccCCc--hhhc-ccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--
Confidence 55532 2355555555555555555532 2222 45555555555555554333 55555555555555555442
Q ss_pred CCCCCCCCCCeEEcccCcccc
Q 038612 237 IDFNGLSDLAWLSFEANNLGA 257 (678)
Q Consensus 237 ~~~~~l~~L~~L~l~~n~l~~ 257 (678)
..+..+++|+.|++++|.+..
T Consensus 191 ~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 191 RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp GGGTTCTTCSEEECCSEEEEC
T ss_pred hHHccCCCCCEEEccCCcCcC
Confidence 234455555555555554443
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.74 E-value=9.3e-18 Score=183.64 Aligned_cols=174 Identities=28% Similarity=0.373 Sum_probs=111.0
Q ss_pred CcCCccccccccccceeeeccCcccCCCcccceeeccCccccccCCccccCCCCCcEEeccCCccCccCCCCCCCcCCCc
Q 038612 318 IGNLVNLNLFSLHLNQLIGTIPHVIGSLKNLQLLYLYGNSLEGNIPSSLGNLTLLTKLALDFNNLQGNIPSSLGSCQNLM 397 (678)
Q Consensus 318 l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 397 (678)
+..+++|+.|++++|.+... + .+..+++|+.|+|++|.+.+..+ +..+++|+.|+|++|.+.+ + +.+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-L-SSLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-TTSTTCTTCC
T ss_pred hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-C-hhhccCCCCC
Confidence 34556666666666666533 2 35666777777777777665433 6667777777777777664 2 2566677777
Q ss_pred eEecCCCccccccCcccccccccceEEEcCCCcccccCCccccCcccCCeeecccCcccccCCccccCCCCCCEEECcCC
Q 038612 398 ELIVSHNKLNGTLPQQILEIRTLSFQLDLSNNLLSGYLPFRVGNLKNLARLDISMNHFFGEIPATLSACTSLEYLYMQGN 477 (678)
Q Consensus 398 ~L~l~~n~l~~~~p~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n 477 (678)
.|+|++|++.+ + ..+..++.| +.|+|++|.+++. ..+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|
T Consensus 113 ~L~Ls~N~l~~-l-~~l~~l~~L-~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 113 SLSLEHNGISD-I-NGLVHLPQL-ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 185 (605)
T ss_dssp EEECTTSCCCC-C-GGGGGCTTC-SEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred EEEecCCCCCC-C-ccccCCCcc-CEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCC
Confidence 77777777663 2 335555555 5666666666654 456666777777777777765444 666777777777777
Q ss_pred ccccccCccccCCCCCCEEECCCCccccc
Q 038612 478 SFGGRIPLSLISLKSLKVLDLSRNNLSGK 506 (678)
Q Consensus 478 ~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ 506 (678)
++.+. ..+..+++|+.|+|++|.+++.
T Consensus 186 ~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 186 HISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred CCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 77653 2466677777777777777654
No 112
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.74 E-value=6.5e-19 Score=197.84 Aligned_cols=230 Identities=17% Similarity=0.188 Sum_probs=91.5
Q ss_pred CCCHHhHHHHHHHHhcCC-CCCCCCCCCCCC-CCCCCcccccccCCCCcEEEEEcCCCCCCCcccCCCCCCCCEEECCCC
Q 038612 31 HTNETDRLALLAIKSQFH-DPLEVTSSWDTS-VNLCQWTGVTCGRRHQRVTELYLRNQSLGADIGYSSWSKLEKLSIAVN 108 (678)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~-~~~~~~~~w~~~-~~~c~w~gv~c~~~~~~v~~l~l~~~~l~~~~~~~~l~~L~~L~Ls~n 108 (678)
+....++++++++..+.. .....-..|... ...+.|.++.+.. .+++.++|.++.+... ....++.++|+.+
T Consensus 128 s~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~~----~~~~l~~l~Ls~~ 201 (727)
T 4b8c_D 128 SLVDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVST--PLTPKIELFANGKDEA----NQALLQHKKLSQY 201 (727)
T ss_dssp ----CCCHHHHHHHHHHHHHHTTC--------------------------------------------------------
T ss_pred hccccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceecC--CccceEEeeCCCCCcc----hhhHhhcCccCcc
Confidence 445677888888887654 111223345332 3456787777653 5677777776655432 1223444444444
Q ss_pred CCccccChhhcCCccCcEEeccCCCCccCCCccCCCCCCCCEEEcccccccccCcccccCCCCCcEEECCCCCCCccCCh
Q 038612 109 HLRGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFLPANRLEGILPL 188 (678)
Q Consensus 109 ~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~ 188 (678)
.+.+ ++++.|.+. ..|..|..+++|++|+|++|.+. .+|..+.++++|++|+|++|.++ .+|.
T Consensus 202 ~i~~--------------~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~ 264 (727)
T 4b8c_D 202 SIDE--------------DDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPA 264 (727)
T ss_dssp -----------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCG
T ss_pred cccC--------------cccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccCh
Confidence 4332 233333333 44555666666666666666665 45555556666666666666666 5565
Q ss_pred hhhcCCCCCCEEEcccCcCCCCCCccCcCCCCCcEEeccCCcceeccCCCCCCCCCCCeEEcccCcccccCCCCcccccc
Q 038612 189 NIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLIELNLGQNHFTGKVSIDFNGLSDLAWLSFEANNLGAEASNDLDFVFS 268 (678)
Q Consensus 189 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~ 268 (678)
.+. .+++|++|+|++|.++ .+|..|+++++|++|+|++|.++ .+|..
T Consensus 265 ~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~------------------------------ 311 (727)
T 4b8c_D 265 EIK-NLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWE------------------------------ 311 (727)
T ss_dssp GGG-GGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSS------------------------------
T ss_pred hhh-CCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChh------------------------------
Confidence 554 5666666666666666 45666666666666666666554 23332
Q ss_pred cCCCCCCcEEEcccCCCCcccChhHhhccccCcEEEccCcceeccCCc
Q 038612 269 LTNCSKLEWLELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPL 316 (678)
Q Consensus 269 l~~~~~L~~L~L~~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~ 316 (678)
+..+++|++|+|++|.+.+.+|..+......+..+++++|.+++.+|.
T Consensus 312 ~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 312 FGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp TTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred hhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 344445555555555555555655554433233455666666655553
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.73 E-value=1.9e-17 Score=170.88 Aligned_cols=161 Identities=19% Similarity=0.205 Sum_probs=99.4
Q ss_pred EEEcCCCCCCCcccCCCCCCCCEEECCCCCCccccChhhc-CCccCcEEeccCCCCccCCCccCCCCCCCCEEEcccccc
Q 038612 80 ELYLRNQSLGADIGYSSWSKLEKLSIAVNHLRGQLPASIG-NLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVEENNF 158 (678)
Q Consensus 80 ~l~l~~~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~-~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l 158 (678)
.++++++.+...+. .-.+.++.|+|++|.+++..+..+. ++++|++|+|++|.+++..+..|.++++|++|+|++|.+
T Consensus 22 ~l~c~~~~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l 100 (361)
T 2xot_A 22 ILSCSKQQLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100 (361)
T ss_dssp EEECCSSCCSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred EEEeCCCCcCccCc-cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcC
Confidence 34555555554322 1223467777777777766666665 677777777777777766666677777777777777777
Q ss_pred cccCcccccCCCCCcEEECCCCCCCccCChhhhcCCCCCCEEEcccCcCCCCCCccC---cCCCCCcEEeccCCcceecc
Q 038612 159 SGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHSL---SNASNLIELNLGQNHFTGKV 235 (678)
Q Consensus 159 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l---~~l~~L~~L~L~~n~l~~~~ 235 (678)
+...+..|.++++|++|+|++|.+++..|..+. .+++|++|+|++|.++...+..| ..+++|+.|+|++|++++..
T Consensus 101 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~-~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 179 (361)
T 2xot_A 101 HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFE-DMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179 (361)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC
T ss_pred CcCCHHHhCCCcCCCEEECCCCcccEECHHHhC-CcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC
Confidence 766666677777777777777777655454444 66777777777777664433333 45666666666666665443
Q ss_pred CCCCCCC
Q 038612 236 SIDFNGL 242 (678)
Q Consensus 236 ~~~~~~l 242 (678)
+..+..+
T Consensus 180 ~~~~~~l 186 (361)
T 2xot_A 180 LTDLQKL 186 (361)
T ss_dssp HHHHHHS
T ss_pred HHHhhhc
Confidence 3333333
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=2.5e-17 Score=154.33 Aligned_cols=152 Identities=14% Similarity=0.205 Sum_probs=101.4
Q ss_pred CCCCCCCEEECCCCCCccccChhhcCCccCcEEeccCCCCccCCCccCCCCCCCCEEEcccccccccCcccccCCCCCcE
Q 038612 95 SSWSKLEKLSIAVNHLRGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSLEM 174 (678)
Q Consensus 95 ~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 174 (678)
..+++|++|++++|.+. .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|.+++..|..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 34566777777777776 344 5777777777777777554 2235777777777777777777666777777777777
Q ss_pred EECCCCCCCccCChhhhcCCCCCCEEEcccCc-CCCCCCccCcCCCCCcEEeccCCcceeccCCCCCCCCCCCeEEcccC
Q 038612 175 IFLPANRLEGILPLNIGFNLPNLKSLIVAQNN-LTGPIPHSLSNASNLIELNLGQNHFTGKVSIDFNGLSDLAWLSFEAN 253 (678)
Q Consensus 175 L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 253 (678)
|++++|.+++..|..+. .+++|++|++++|. ++ .+| .+..+++|++|++++|++++.. .+..+++|+.|++++|
T Consensus 117 L~Ls~n~i~~~~~~~l~-~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 117 LDISHSAHDDSILTKIN-TLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EECCSSBCBGGGHHHHT-TCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC
T ss_pred EEecCCccCcHhHHHHh-hCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCc
Confidence 77777777766666665 67777777777776 54 344 5677777777777777766422 4455555555555555
Q ss_pred cc
Q 038612 254 NL 255 (678)
Q Consensus 254 ~l 255 (678)
.+
T Consensus 192 ~i 193 (197)
T 4ezg_A 192 TI 193 (197)
T ss_dssp --
T ss_pred cc
Confidence 44
No 115
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.71 E-value=1.5e-17 Score=154.98 Aligned_cols=155 Identities=23% Similarity=0.286 Sum_probs=110.7
Q ss_pred ceEecCCCccccccCcccccccccceEEEcCCCcccccCCc-cccCcccCCeeecccCcccccCCccccCCCCCCEEECc
Q 038612 397 MELIVSHNKLNGTLPQQILEIRTLSFQLDLSNNLLSGYLPF-RVGNLKNLARLDISMNHFFGEIPATLSACTSLEYLYMQ 475 (678)
Q Consensus 397 ~~L~l~~n~l~~~~p~~~~~~~~l~~~L~l~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~ 475 (678)
+.+++++|.+. .+|..+.. .+ +.|++++|.+++..+. .+..+++|++|+|++|++++..|..|..+++|++|+|+
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l-~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HT-TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TC-SEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCCC--CC-CEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 45556666554 45543332 33 5666666666655553 47778888888888888887778888888888888888
Q ss_pred CCccccccCccccCCCCCCEEECCCCcccccCCccCCCCCCCCEEeCCcCcceeeCCCCCccCCCCceeccCCCCCcccC
Q 038612 476 GNSFGGRIPLSLISLKSLKVLDLSRNNLSGKIPEYLENLPFLQYLDLSYNHFEGQVPAKGVFHNKTSISLVGNENLCGGL 555 (678)
Q Consensus 476 ~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~~~~~~n~~lc~~~ 555 (678)
+|++++..+..|.++++|++|++++|++++..|..+..+++|++|++++|++.+.++..+....++...+.++...|+.+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P 166 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence 88888888888888888888888888888888888888888888888888888876643322223333344444556554
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.70 E-value=5.3e-19 Score=192.36 Aligned_cols=218 Identities=19% Similarity=0.128 Sum_probs=113.3
Q ss_pred cCCCCCCcEEEcccCCCCcccChhHhhccccCcEEEccCcceeccCCccCcCCccccccccccceeeeccCcccCCCccc
Q 038612 269 LTNCSKLEWLELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLIGTIPHVIGSLKNL 348 (678)
Q Consensus 269 l~~~~~L~~L~L~~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L 348 (678)
+..+++|+.|+|++|.+. .+|..++.+.. |+.|++++|......|. .+..+...+..|..++.+++|
T Consensus 345 ~~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~-L~~L~l~~n~~l~~l~~-----------ll~~~~~~~~~~~~l~~l~~L 411 (567)
T 1dce_A 345 SATDEQLFRCELSVEKST-VLQSELESCKE-LQELEPENKWCLLTIIL-----------LMRALDPLLYEKETLQYFSTL 411 (567)
T ss_dssp CSTTTTSSSCCCCHHHHH-HHHHHHHHHHH-HHHHCTTCHHHHHHHHH-----------HHHHHCTGGGHHHHHHHHHHH
T ss_pred cccCccceeccCChhhHH-hhHHHHHHHHH-HHHhccccchhhhhHHH-----------HHHhcccccCCHHHHHHHHhc
Confidence 355667777777777765 66777777665 77777755531100000 000011223334444445555
Q ss_pred ceee-ccCccccccCCccccCCCCCcEEeccCCccCccCCCCCCCcCCCceEecCCCccccccCcccccccccceEEEcC
Q 038612 349 QLLY-LYGNSLEGNIPSSLGNLTLLTKLALDFNNLQGNIPSSLGSCQNLMELIVSHNKLNGTLPQQILEIRTLSFQLDLS 427 (678)
Q Consensus 349 ~~L~-l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~L~l~ 427 (678)
+.|+ ++.|.+. .|+.+.+.+|.+....+ ..|+.|++++|.+.+ +|. +..++.+ +.|+++
T Consensus 412 ~~L~~l~~n~~~-----------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L-~~L~Ls 471 (567)
T 1dce_A 412 KAVDPMRAAYLD-----------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLV-THLDLS 471 (567)
T ss_dssp HHHCGGGHHHHH-----------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTC-CEEECC
T ss_pred ccCcchhhcccc-----------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccC-cEeecC
Confidence 5554 3333221 12222223333221111 123444444444432 332 3334443 444444
Q ss_pred CCcccccCCccccCcccCCeeecccCcccccCCccccCCCCCCEEECcCCcccccc-CccccCCCCCCEEECCCCccccc
Q 038612 428 NNLLSGYLPFRVGNLKNLARLDISMNHFFGEIPATLSACTSLEYLYMQGNSFGGRI-PLSLISLKSLKVLDLSRNNLSGK 506 (678)
Q Consensus 428 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~ls~n~l~~~ 506 (678)
+|.++ .+|..+..+++|+.|+|++|++++ +| .++.+++|+.|+|++|++++.. |..+..+++|+.|+|++|++++.
T Consensus 472 ~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 472 HNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp SSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred ccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 44444 344455666677777777777764 44 6677777777777777777665 77777777777777777777755
Q ss_pred CCcc---CCCCCCCCEEeC
Q 038612 507 IPEY---LENLPFLQYLDL 522 (678)
Q Consensus 507 ~p~~---l~~l~~L~~L~l 522 (678)
.|.. +..+++|+.|++
T Consensus 549 ~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 549 EGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SSCTTHHHHHCTTCSEEEC
T ss_pred ccHHHHHHHHCcccCccCC
Confidence 4422 223677777754
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.70 E-value=2.3e-19 Score=195.26 Aligned_cols=192 Identities=21% Similarity=0.180 Sum_probs=146.0
Q ss_pred cCCccccccccccceeeeccCcccCCCcccceeeccCcc-------------ccccCCccccCCCCCcEEe-ccCCccCc
Q 038612 319 GNLVNLNLFSLHLNQLIGTIPHVIGSLKNLQLLYLYGNS-------------LEGNIPSSLGNLTLLTKLA-LDFNNLQG 384 (678)
Q Consensus 319 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~-------------l~~~~~~~~~~l~~L~~L~-L~~n~l~~ 384 (678)
..+++|+.|++++|++. .+|..++.+++|+.|++++|. ..+..|..++.+++|+.|+ ++.|.+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~-- 422 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL-- 422 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH--
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc--
Confidence 45667777777777765 556677777777777776654 2333444455555555555 343322
Q ss_pred cCCCCCCCcCCCceEecCCCccccccCcccccccccceEEEcCCCcccccCCccccCcccCCeeecccCcccccCCcccc
Q 038612 385 NIPSSLGSCQNLMELIVSHNKLNGTLPQQILEIRTLSFQLDLSNNLLSGYLPFRVGNLKNLARLDISMNHFFGEIPATLS 464 (678)
Q Consensus 385 ~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~ 464 (678)
.+|+.+.+++|.+.. +|. ..+ +.|++++|.+++ +|. +..+++|+.|+|++|.++ .+|..++
T Consensus 423 ---------~~L~~l~l~~n~i~~-l~~-----~~L-~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~ 483 (567)
T 1dce_A 423 ---------DDLRSKFLLENSVLK-MEY-----ADV-RVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALA 483 (567)
T ss_dssp ---------HHHHHHHHHHHHHHH-HHH-----TTC-SEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGG
T ss_pred ---------chhhhhhhhcccccc-cCc-----cCc-eEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhh
Confidence 234445555555542 221 124 789999999997 565 999999999999999999 8899999
Q ss_pred CCCCCCEEECcCCccccccCccccCCCCCCEEECCCCcccccC-CccCCCCCCCCEEeCCcCcceeeCCCC
Q 038612 465 ACTSLEYLYMQGNSFGGRIPLSLISLKSLKVLDLSRNNLSGKI-PEYLENLPFLQYLDLSYNHFEGQVPAK 534 (678)
Q Consensus 465 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~-p~~l~~l~~L~~L~l~~n~l~~~~p~~ 534 (678)
.+++|+.|+|++|++++ +| .+..+++|+.|+|++|++++.. |..+..+++|+.|++++|++.+.+|..
T Consensus 484 ~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 484 ALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552 (567)
T ss_dssp GCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred cCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence 99999999999999997 56 8999999999999999999887 999999999999999999999877644
No 118
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=6.7e-17 Score=151.47 Aligned_cols=152 Identities=19% Similarity=0.212 Sum_probs=132.1
Q ss_pred CcEEEEEcCCCCCCCcccCCCCCCCCEEECCCCCCccccChhhcCCccCcEEeccCCCCccCCCccCCCCCCCCEEEccc
Q 038612 76 QRVTELYLRNQSLGADIGYSSWSKLEKLSIAVNHLRGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVEE 155 (678)
Q Consensus 76 ~~v~~l~l~~~~l~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~ 155 (678)
.+++.++++++.+...+.+..+++|++|++++|.+. .+..+..+++|++|++++|.+++..|..|+.+++|++|++++
T Consensus 44 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~ 121 (197)
T 4ezg_A 44 NSLTYITLANINVTDLTGIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH 121 (197)
T ss_dssp HTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCS
T ss_pred CCccEEeccCCCccChHHHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecC
Confidence 568899999999987678889999999999999775 345899999999999999999988889999999999999999
Q ss_pred ccccccCcccccCCCCCcEEECCCCCCCccCChhhhcCCCCCCEEEcccCcCCCCCCccCcCCCCCcEEeccCCccee
Q 038612 156 NNFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLIELNLGQNHFTG 233 (678)
Q Consensus 156 n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~ 233 (678)
|.+++..|..+..+++|++|++++|...+.+| .+. .+++|++|++++|.+++ ++ .+..+++|++|++++|++.+
T Consensus 122 n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~-~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 122 SAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLK-TLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp SBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGG-GCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred CccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhc-CCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 99998889999999999999999998333566 454 89999999999999986 33 78999999999999998753
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=5.9e-17 Score=159.04 Aligned_cols=170 Identities=23% Similarity=0.260 Sum_probs=107.3
Q ss_pred CccccccccccceeeeccCcccCCCcccceeeccCccccccCCccccCCCCCcEEeccCCccCccCCCCCCCcCCCceEe
Q 038612 321 LVNLNLFSLHLNQLIGTIPHVIGSLKNLQLLYLYGNSLEGNIPSSLGNLTLLTKLALDFNNLQGNIPSSLGSCQNLMELI 400 (678)
Q Consensus 321 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 400 (678)
+.++..++++++.+.+.. .+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+.+..+ +..+++|+.|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 444555555555544332 24455555555555555542 23 34555555555555555554322 45555555555
Q ss_pred cCCCccccccCcccccccccceEEEcCCCcccccCCccccCcccCCeeecccCcccccCCccccCCCCCCEEECcCCccc
Q 038612 401 VSHNKLNGTLPQQILEIRTLSFQLDLSNNLLSGYLPFRVGNLKNLARLDISMNHFFGEIPATLSACTSLEYLYMQGNSFG 480 (678)
Q Consensus 401 l~~n~l~~~~p~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~ 480 (678)
+++|++ ++..+ +.. ++|++|++++|++++. +.+..+++|++|++++|+++
T Consensus 92 L~~N~l-------------------------~~l~~--~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~ 141 (263)
T 1xeu_A 92 VNRNRL-------------------------KNLNG--IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLK 141 (263)
T ss_dssp CCSSCC-------------------------SCCTT--CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCC
T ss_pred CCCCcc-------------------------CCcCc--ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCC
Confidence 555554 43211 112 6788888888888753 35778888888888888887
Q ss_pred cccCccccCCCCCCEEECCCCcccccCCccCCCCCCCCEEeCCcCcceee
Q 038612 481 GRIPLSLISLKSLKVLDLSRNNLSGKIPEYLENLPFLQYLDLSYNHFEGQ 530 (678)
Q Consensus 481 ~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~ 530 (678)
+. + .+..+++|+.|++++|++++. ..+..+++|+.|++++|++.+.
T Consensus 142 ~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 142 SI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp BC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred CC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 64 3 577888888888888888866 5678888899999998888754
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=5.2e-17 Score=159.43 Aligned_cols=167 Identities=23% Similarity=0.283 Sum_probs=132.4
Q ss_pred CcEEEccCcceeccCCccCcCCccccccccccceeeeccCcccCCCcccceeeccCccccccCCccccCCCCCcEEeccC
Q 038612 300 MTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLIGTIPHVIGSLKNLQLLYLYGNSLEGNIPSSLGNLTLLTKLALDF 379 (678)
Q Consensus 300 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 379 (678)
++.++++++.+++.. .+..+++|+.|++++|.+... + .+..+++|++|++++|.+.+..+ +..+++|++|++++
T Consensus 21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred HHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence 677888999887544 578899999999999998754 4 68899999999999999996544 89999999999999
Q ss_pred CccCccCCCCCCCcCCCceEecCCCccccccCcccccccccceEEEcCCCcccccCCccccCcccCCeeecccCcccccC
Q 038612 380 NNLQGNIPSSLGSCQNLMELIVSHNKLNGTLPQQILEIRTLSFQLDLSNNLLSGYLPFRVGNLKNLARLDISMNHFFGEI 459 (678)
Q Consensus 380 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~ 459 (678)
|++.+. |. +.. ++|+.|++++|++.+ ++ .+..+++|+.|++++|++++.
T Consensus 95 N~l~~l-~~-~~~-~~L~~L~L~~N~l~~-~~--------------------------~l~~l~~L~~L~Ls~N~i~~~- 143 (263)
T 1xeu_A 95 NRLKNL-NG-IPS-ACLSRLFLDNNELRD-TD--------------------------SLIHLKNLEILSIRNNKLKSI- 143 (263)
T ss_dssp SCCSCC-TT-CCC-SSCCEEECCSSCCSB-SG--------------------------GGTTCTTCCEEECTTSCCCBC-
T ss_pred CccCCc-Cc-ccc-CcccEEEccCCccCC-Ch--------------------------hhcCcccccEEECCCCcCCCC-
Confidence 999863 33 222 778888887777663 11 245567788888888888753
Q ss_pred CccccCCCCCCEEECcCCccccccCccccCCCCCCEEECCCCccccc
Q 038612 460 PATLSACTSLEYLYMQGNSFGGRIPLSLISLKSLKVLDLSRNNLSGK 506 (678)
Q Consensus 460 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ 506 (678)
+ .+..+++|++|++++|++++. ..+..+++|+.|++++|.++..
T Consensus 144 ~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 144 V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 3 577888888888888888765 5678888999999999988855
No 121
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.68 E-value=5.5e-17 Score=165.33 Aligned_cols=100 Identities=12% Similarity=0.001 Sum_probs=60.1
Q ss_pred cCcEEEccCcceeccCCccCcCCccccccccccceeeeccCcccCCCcccc-eeeccCccccccCCccccCCCCCcEEec
Q 038612 299 TMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLIGTIPHVIGSLKNLQ-LLYLYGNSLEGNIPSSLGNLTLLTKLAL 377 (678)
Q Consensus 299 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~L 377 (678)
+|+.+++++|+++...+..|.++++|+.+++.+| +....+.+|.++++|+ .+++.+ .++...+.+|.+|++|+.+++
T Consensus 227 ~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l 304 (329)
T 3sb4_A 227 NLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLA 304 (329)
T ss_dssp TCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEE
T ss_pred CCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEe
Confidence 3666666666666555555666666666666655 4444455566666666 666665 455444556666666666666
Q ss_pred cCCccCccCCCCCCCcCCCceEe
Q 038612 378 DFNNLQGNIPSSLGSCQNLMELI 400 (678)
Q Consensus 378 ~~n~l~~~~~~~~~~l~~L~~L~ 400 (678)
+.|.+....+..|.++++|+.++
T Consensus 305 ~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 305 TGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CSSCCCEECTTTTCTTCCCCEEE
T ss_pred CCCccCccchhhhcCCcchhhhc
Confidence 66666655555666666666654
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.64 E-value=6.3e-16 Score=140.78 Aligned_cols=134 Identities=19% Similarity=0.163 Sum_probs=101.5
Q ss_pred CCCCCCEEECCCCCCc-cccChhhcCCccCcEEeccCCCCccCCCccCCCCCCCCEEEcccccccccCcccccCCCCCcE
Q 038612 96 SWSKLEKLSIAVNHLR-GQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSLEM 174 (678)
Q Consensus 96 ~l~~L~~L~Ls~n~~~-~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 174 (678)
..++|++|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+.++++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3467888888888887 67777778888888888888888755 67888888888888888888767777777888888
Q ss_pred EECCCCCCCccCC-hhhhcCCCCCCEEEcccCcCCCCCC---ccCcCCCCCcEEeccCCcce
Q 038612 175 IFLPANRLEGILP-LNIGFNLPNLKSLIVAQNNLTGPIP---HSLSNASNLIELNLGQNHFT 232 (678)
Q Consensus 175 L~l~~n~~~~~~p-~~~~~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~L~~n~l~ 232 (678)
|++++|.+++..+ ..+. .+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 100 L~Ls~N~l~~~~~~~~l~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLK-KLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp EECBSSSCCSSGGGGGGS-SCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred EeccCCccCcchhHHHHh-cCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 8888888774322 3443 77888888888888775544 36777778888887777665
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.64 E-value=5.4e-17 Score=182.24 Aligned_cols=181 Identities=20% Similarity=0.180 Sum_probs=108.3
Q ss_pred cChhHhhccccCcEEEccCcceeccCCccCcCCccccccccccceeeeccCcccCCCcccceeeccCccccccCCccccC
Q 038612 289 LPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLIGTIPHVIGSLKNLQLLYLYGNSLEGNIPSSLGN 368 (678)
Q Consensus 289 ~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 368 (678)
.+..+..+.. |+.|+|++|.+. .+|..+..+++|+.|+|++|.+. .+|..|+.+++|++|+|++|.++ .+|..+++
T Consensus 216 ~~~~~~~l~~-L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 216 PKDSKYDDQL-WHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp ------CCCC-CCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred ChhhhccCCC-CcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence 3445555554 777777777776 56666667888888888888887 67777888888888888888888 66888888
Q ss_pred CCCCcEEeccCCccCccCCCCCCCcCCCceEecCCCccccccCcccccccccceEEEcCCCcccccCCccccCcccCCee
Q 038612 369 LTLLTKLALDFNNLQGNIPSSLGSCQNLMELIVSHNKLNGTLPQQILEIRTLSFQLDLSNNLLSGYLPFRVGNLKNLARL 448 (678)
Q Consensus 369 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~l~~L~~L 448 (678)
+++|++|+|++|.++ .+|..|..+++|+.|+|++|.+.+.+|..+.........+++++|.+++.+|. .|+.|
T Consensus 292 l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l 364 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFI 364 (727)
T ss_dssp GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C----
T ss_pred CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------cccee
Confidence 888888888888887 66777888888888888888888777776655433323467788888777764 45556
Q ss_pred ecccC--------cccccCCccccCCCCCCEEECcCCccc
Q 038612 449 DISMN--------HFFGEIPATLSACTSLEYLYMQGNSFG 480 (678)
Q Consensus 449 ~Ls~n--------~~~~~~~~~~~~l~~L~~L~L~~n~l~ 480 (678)
+++.| .+.+..+..+..+..+....++.|-+.
T Consensus 365 ~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 365 EINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp -------------------------------------CCC
T ss_pred EeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 66665 222222233334444555555555543
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.63 E-value=5.3e-16 Score=144.40 Aligned_cols=131 Identities=26% Similarity=0.288 Sum_probs=103.3
Q ss_pred ceEecCCCccccccCcccccccccceEEEcCCCcccccCCccccCcccCCeeecccCcccccCCccccCCCCCCEEECcC
Q 038612 397 MELIVSHNKLNGTLPQQILEIRTLSFQLDLSNNLLSGYLPFRVGNLKNLARLDISMNHFFGEIPATLSACTSLEYLYMQG 476 (678)
Q Consensus 397 ~~L~l~~n~l~~~~p~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~ 476 (678)
+.+++++|.+. .+|..+. +.+ +.|++++|.++ .+|..+..+++|++|+|++|.+++..+..|..+++|++|+|++
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l-~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDV-TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTC-CEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCC-CEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 34555555555 4444332 223 56666666666 4556777888899999999999877778889999999999999
Q ss_pred CccccccCccccCCCCCCEEECCCCcccccCCccCCCCCCCCEEeCCcCcceeeCC
Q 038612 477 NSFGGRIPLSLISLKSLKVLDLSRNNLSGKIPEYLENLPFLQYLDLSYNHFEGQVP 532 (678)
Q Consensus 477 n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p 532 (678)
|++++..+..|..+++|+.|+|++|+++...+..|..+++|+.|++++|++.+...
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCc
Confidence 99998888889999999999999999997777788899999999999999987665
No 125
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.63 E-value=8.9e-16 Score=156.37 Aligned_cols=201 Identities=14% Similarity=0.077 Sum_probs=88.4
Q ss_pred CccccccccccceeeeccCcccCCCcccceeeccCccccccCCccccCCCCCcEEeccCCcc----CccCCCCCCCcCCC
Q 038612 321 LVNLNLFSLHLNQLIGTIPHVIGSLKNLQLLYLYGNSLEGNIPSSLGNLTLLTKLALDFNNL----QGNIPSSLGSCQNL 396 (678)
Q Consensus 321 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l----~~~~~~~~~~l~~L 396 (678)
+++|+.+++.. .+....+.+|.+|++|+.+++++|.+....+..|.++.++..+....+.. .......|..+.+|
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 66666666665 55545455566666666666666665555555555555555555444211 11122233334444
Q ss_pred c-eEecCCCccccccCcccc----cccccceEEEcCCCcccccCCccccCcccCCeeecccCcccccCCccccCCCCCCE
Q 038612 397 M-ELIVSHNKLNGTLPQQIL----EIRTLSFQLDLSNNLLSGYLPFRVGNLKNLARLDISMNHFFGEIPATLSACTSLEY 471 (678)
Q Consensus 397 ~-~L~l~~n~l~~~~p~~~~----~~~~l~~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~ 471 (678)
+ .+.+.... .++..+. ....+ ..+.+.++-...........+++|++++|++|+++...+..|.+|++|++
T Consensus 179 ~~~i~~~~~~---~l~~~~~~~~~~~~~~-~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~ 254 (329)
T 3sb4_A 179 ETTIQVGAMG---KLEDEIMKAGLQPRDI-NFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLK 254 (329)
T ss_dssp EEEEEECTTC---CHHHHHHHTTCCGGGC-SEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCE
T ss_pred ceeEEecCCC---cHHHHHhhcccCcccc-ceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCE
Confidence 4 22222211 1111110 00001 11111111000000000012445555555555555444445555555555
Q ss_pred EECcCCccccccCccccCCCCCC-EEECCCCcccccCCccCCCCCCCCEEeCCcCcce
Q 038612 472 LYMQGNSFGGRIPLSLISLKSLK-VLDLSRNNLSGKIPEYLENLPFLQYLDLSYNHFE 528 (678)
Q Consensus 472 L~L~~n~l~~~~~~~~~~l~~L~-~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~ 528 (678)
++|.+| +..+.+.+|.++++|+ .+++.+ .++...+.+|.++++|+.+++++|++.
T Consensus 255 l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~ 310 (329)
T 3sb4_A 255 IKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT 310 (329)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC
T ss_pred EECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC
Confidence 555554 4444444555555555 555555 444444455555555555555555544
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.62 E-value=6.3e-16 Score=137.71 Aligned_cols=128 Identities=21% Similarity=0.207 Sum_probs=81.2
Q ss_pred CCCCCEEECCCCCCc-cccChhhcCCccCcEEeccCCCCccCCCccCCCCCCCCEEEcccccccccCcccccCCCCCcEE
Q 038612 97 WSKLEKLSIAVNHLR-GQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSLEMI 175 (678)
Q Consensus 97 l~~L~~L~Ls~n~~~-~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 175 (678)
.++|+.|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 355677777777766 56666666777777777777766644 556667777777777777765566666666677777
Q ss_pred ECCCCCCCcc-CChhhhcCCCCCCEEEcccCcCCCCCC---ccCcCCCCCcEEecc
Q 038612 176 FLPANRLEGI-LPLNIGFNLPNLKSLIVAQNNLTGPIP---HSLSNASNLIELNLG 227 (678)
Q Consensus 176 ~l~~n~~~~~-~p~~~~~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~L~ 227 (678)
++++|.+++. .+..+. .+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLK-KLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGG-GCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHh-hCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 7777766642 123333 56666666666666665443 355666666666654
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.62 E-value=4.7e-15 Score=138.06 Aligned_cols=127 Identities=20% Similarity=0.259 Sum_probs=64.7
Q ss_pred cEEeccCCCCccCCCccCCCCCCCCEEEcccccccccCcc-cccCCCCCcEEECCCCCCCccCChhhhcCCCCCCEEEcc
Q 038612 125 QAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPV-SIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVA 203 (678)
Q Consensus 125 ~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~ 203 (678)
+++++++|.++ .+|..+.. +|++|++++|.+++..+. .+..+++|++|++++|.+++..|..+. .+++|++|+++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFE-GASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTT-TCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcC-CcccCCEEECC
Confidence 44555555553 34443332 555555555555543332 245555555555555555544444443 45555555555
Q ss_pred cCcCCCCCCccCcCCCCCcEEeccCCcceeccCCCCCCCCCCCeEEcccCcc
Q 038612 204 QNNLTGPIPHSLSNASNLIELNLGQNHFTGKVSIDFNGLSDLAWLSFEANNL 255 (678)
Q Consensus 204 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 255 (678)
+|.+++..+..|.++++|++|++++|++++..|..+..+++|++|++++|.+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 5555555555555556666666666665555555444444444444444433
No 128
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.61 E-value=5.3e-14 Score=146.22 Aligned_cols=270 Identities=11% Similarity=0.104 Sum_probs=157.5
Q ss_pred CCCCCEEECCCCCCccccChhhcCCccCcEEeccCCCCccCCCccCCCCCCCCEEEcccccccccCcccccCCCCCcEEE
Q 038612 97 WSKLEKLSIAVNHLRGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIF 176 (678)
Q Consensus 97 l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 176 (678)
+..++.+.+.. .++.....+|.++ +|+.+++..+ ++..-..+|.++ +|+.+++.. .++...+.+|.+|++|+.++
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 45566666654 3444555566664 5777777655 554555566664 577777764 55555566777777777777
Q ss_pred CCCCCCCccCChhhhcCCCCCCEEEcccCcCCCCCCccCcCCCCCcEEeccCCcceeccCCCCCCCCCCCeEEcccCccc
Q 038612 177 LPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLIELNLGQNHFTGKVSIDFNGLSDLAWLSFEANNLG 256 (678)
Q Consensus 177 l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 256 (678)
+++|.++ .++...+ ...+|+.+.+..+ ++.+....|.++++|+.+++..+ ++.....+|.+ .+|+.+.+. +.+.
T Consensus 187 l~~n~l~-~I~~~aF-~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~ 260 (401)
T 4fdw_A 187 LSKTKIT-KLPASTF-VYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVT 260 (401)
T ss_dssp CTTSCCS-EECTTTT-TTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCC
T ss_pred cCCCcce-EechhhE-eecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCcc
Confidence 7777766 4555555 3567777777643 55455566777777777777653 44455555555 556666662 2233
Q ss_pred ccCCCCcccccccCCCCCCcEEEcccCCCCcccChhHhhccccCcEEEccCcceeccCCccCcCCccccccccccceeee
Q 038612 257 AEASNDLDFVFSLTNCSKLEWLELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLIG 336 (678)
Q Consensus 257 ~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~ 336 (678)
.... ..|.+|++|+.+++.++.+. .+......+..|.+|++|+.+.+.+ .+..
T Consensus 261 ~I~~------~aF~~c~~L~~l~l~~~~~~--------------------~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~ 313 (401)
T 4fdw_A 261 NIAS------RAFYYCPELAEVTTYGSTFN--------------------DDPEAMIHPYCLEGCPKLARFEIPE-SIRI 313 (401)
T ss_dssp EECT------TTTTTCTTCCEEEEESSCCC--------------------CCTTCEECTTTTTTCTTCCEECCCT-TCCE
T ss_pred EECh------hHhhCCCCCCEEEeCCcccc--------------------CCcccEECHHHhhCCccCCeEEeCC-ceEE
Confidence 3222 14455555555555544332 0011123344566667777777763 3554
Q ss_pred ccCcccCCCcccceeeccCccccccCCccccCCCCCcEEeccCCccCccCCCCCCCcC-CCceEecCCCcc
Q 038612 337 TIPHVIGSLKNLQLLYLYGNSLEGNIPSSLGNLTLLTKLALDFNNLQGNIPSSLGSCQ-NLMELIVSHNKL 406 (678)
Q Consensus 337 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l 406 (678)
....+|.+|.+|+.+++..+ ++...+.+|.++ +|+.+++.+|.+....+..|..++ +++.|++..+.+
T Consensus 314 I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 314 LGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp ECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred EhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 55566777777777777544 444455566666 777777777766655555566553 566666665543
No 129
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=3.3e-15 Score=136.00 Aligned_cols=132 Identities=25% Similarity=0.261 Sum_probs=92.8
Q ss_pred CCCcEEeccCCccC-ccCCCCCCCcCCCceEecCCCccccccCcccccccccceEEEcCCCcccccCCccccCcccCCee
Q 038612 370 TLLTKLALDFNNLQ-GNIPSSLGSCQNLMELIVSHNKLNGTLPQQILEIRTLSFQLDLSNNLLSGYLPFRVGNLKNLARL 448 (678)
Q Consensus 370 ~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~l~~L~~L 448 (678)
++|++|++++|.+. +.+|..+..+++|+.|++++|.+ ++. ..+..+++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l-------------------------~~~--~~~~~l~~L~~L 76 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL-------------------------ISV--SNLPKLPKLKKL 76 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCC-------------------------CCC--SSCCCCSSCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCC-------------------------CCh--hhhccCCCCCEE
Confidence 45555555555554 44454445555555555555544 433 345667788888
Q ss_pred ecccCcccccCCccccCCCCCCEEECcCCcccccc-CccccCCCCCCEEECCCCcccccCC---ccCCCCCCCCEEeCCc
Q 038612 449 DISMNHFFGEIPATLSACTSLEYLYMQGNSFGGRI-PLSLISLKSLKVLDLSRNNLSGKIP---EYLENLPFLQYLDLSY 524 (678)
Q Consensus 449 ~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~ls~n~l~~~~p---~~l~~l~~L~~L~l~~ 524 (678)
++++|++++.+|..+..+++|++|++++|++++.. +..+..+++|+.|++++|.+++..+ ..+..+++|++|++++
T Consensus 77 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~ 156 (168)
T 2ell_A 77 ELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYD 156 (168)
T ss_dssp EEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred ECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCC
Confidence 88888888767777777888888888888887643 2677888888888888888886555 4778888888888888
Q ss_pred Ccce
Q 038612 525 NHFE 528 (678)
Q Consensus 525 n~l~ 528 (678)
|.+.
T Consensus 157 n~~~ 160 (168)
T 2ell_A 157 REDQ 160 (168)
T ss_dssp TTSC
T ss_pred CChh
Confidence 8875
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=1.8e-15 Score=134.79 Aligned_cols=129 Identities=20% Similarity=0.271 Sum_probs=107.3
Q ss_pred CCccCcEEeccCCCCc-cCCCccCCCCCCCCEEEcccccccccCcccccCCCCCcEEECCCCCCCccCChhhhcCCCCCC
Q 038612 120 NLSALQAFDVGENTLH-GRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLK 198 (678)
Q Consensus 120 ~l~~L~~L~ls~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~ 198 (678)
..++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+.++++|++|++++|.+++.+|..+. .+++|+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~-~l~~L~ 91 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAE-KCPNLT 91 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHH-HCTTCC
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhh-hCCCCC
Confidence 3478999999999998 78888889999999999999999865 7788999999999999999977776655 789999
Q ss_pred EEEcccCcCCCC-CCccCcCCCCCcEEeccCCcceeccC---CCCCCCCCCCeEEcc
Q 038612 199 SLIVAQNNLTGP-IPHSLSNASNLIELNLGQNHFTGKVS---IDFNGLSDLAWLSFE 251 (678)
Q Consensus 199 ~L~l~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~l~ 251 (678)
+|++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 999999999863 34778899999999999998886655 356666677666654
No 131
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.58 E-value=9.8e-15 Score=134.11 Aligned_cols=133 Identities=23% Similarity=0.256 Sum_probs=105.8
Q ss_pred CceEecCCCccccccCcccccccccceEEEcCCCcccccCCccccCcccCCeeecccCcccccCCccccCCCCCCEEECc
Q 038612 396 LMELIVSHNKLNGTLPQQILEIRTLSFQLDLSNNLLSGYLPFRVGNLKNLARLDISMNHFFGEIPATLSACTSLEYLYMQ 475 (678)
Q Consensus 396 L~~L~l~~n~l~~~~p~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~ 475 (678)
.+.++++++++. .+|..+. +.+ +.|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|+++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~~--~~l-~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGIP--SSA-TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCS-SCCTTCC--TTC-SEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCc-cCCCCCC--CCC-cEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 455666666655 4443332 233 667777777776666677888999999999999987767778899999999999
Q ss_pred CCccccccCccccCCCCCCEEECCCCcccccCCccCCCCCCCCEEeCCcCcceeeCC
Q 038612 476 GNSFGGRIPLSLISLKSLKVLDLSRNNLSGKIPEYLENLPFLQYLDLSYNHFEGQVP 532 (678)
Q Consensus 476 ~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p 532 (678)
+|++++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++.+.+|
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 999998777788899999999999999997777777889999999999999988766
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.57 E-value=3.1e-14 Score=132.42 Aligned_cols=107 Identities=29% Similarity=0.389 Sum_probs=49.4
Q ss_pred CCCEEEcccccccccCcccccCCCCCcEEECCCCCCCccCChhhhcCCCCCCEEEcccCcCCCCCCccCcCCCCCcEEec
Q 038612 147 SLKFLNVEENNFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLIELNL 226 (678)
Q Consensus 147 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 226 (678)
+|++|++++|.++ .+|..|.++++|++|++++|.+++..+..+. .+++|++|++++|.+++..+..|..+++|++|++
T Consensus 32 ~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~-~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFS-NMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHcc-CCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 4444444444444 3344444444444444444444433222222 4445555555555554444444555555555555
Q ss_pred cCCcceeccCCCCCCCCCCCeEEcccCcc
Q 038612 227 GQNHFTGKVSIDFNGLSDLAWLSFEANNL 255 (678)
Q Consensus 227 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 255 (678)
++|+++...+..|..+++|+.|++++|.+
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 55555444333344444444444444433
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.56 E-value=3.7e-14 Score=130.23 Aligned_cols=86 Identities=19% Similarity=0.305 Sum_probs=38.0
Q ss_pred CCCCEEECCCCCCccccChhhcCCccCcEEeccCCCCccCCCccCCCCCCCCEEEcccccccccCcccccCCCCCcEEEC
Q 038612 98 SKLEKLSIAVNHLRGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFL 177 (678)
Q Consensus 98 ~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 177 (678)
++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 34455555555444433334444444444444444444333333444444444444444444333333344444444444
Q ss_pred CCCCCC
Q 038612 178 PANRLE 183 (678)
Q Consensus 178 ~~n~~~ 183 (678)
++|.++
T Consensus 108 ~~N~l~ 113 (177)
T 2o6r_A 108 DTNQLK 113 (177)
T ss_dssp CSSCCS
T ss_pred cCCcce
Confidence 444443
No 134
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.55 E-value=4e-13 Score=140.33 Aligned_cols=66 Identities=15% Similarity=0.147 Sum_probs=39.2
Q ss_pred ccCCCccCCCCCCCCEEEcccccccccCcccccCCCCCcEEECCCCCCCccCChhhhcCCCCCCEEEcc
Q 038612 135 HGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVA 203 (678)
Q Consensus 135 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~ 203 (678)
+..-..+|.++++|+.+.+.. .++.+...+|.++++|+.+++..+ ++ .++...+..+.+|+.+.+.
T Consensus 60 tsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~c~~L~~i~~p 125 (394)
T 4fs7_A 60 VSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VK-MIGRCTFSGCYALKSILLP 125 (394)
T ss_dssp EEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CC-EECTTTTTTCTTCCCCCCC
T ss_pred eEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ce-Eccchhhcccccchhhccc
Confidence 334445677777777777763 355555667777777777777544 33 3444444455666655544
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.54 E-value=5e-13 Score=138.84 Aligned_cols=196 Identities=14% Similarity=0.090 Sum_probs=102.2
Q ss_pred CCCEEEcccCcCCCCCCccCcCCCCCcEEeccCCcceeccCCCCCCCCCCCeEEcccCcccccCCCCcccccccCCCCCC
Q 038612 196 NLKSLIVAQNNLTGPIPHSLSNASNLIELNLGQNHFTGKVSIDFNGLSDLAWLSFEANNLGAEASNDLDFVFSLTNCSKL 275 (678)
Q Consensus 196 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L 275 (678)
+|+.+.+.. .++.+.+..|.+|++|+.+++.+|.++......|. ..+|+.+.+..+ +..... ..|.+|++|
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~------~aF~~~~~L 228 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGS------QAFLKTSQL 228 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECT------TTTTTCTTC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehh------hHhhCCCCC
Confidence 344444443 33333334455555555555555555444444444 345555555422 322222 134555555
Q ss_pred cEEEcccCCCCcccChhHhhccccCcEEEccCcceeccCCccCcCCccccccccccceee-----eccCcccCCCcccce
Q 038612 276 EWLELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLI-----GTIPHVIGSLKNLQL 350 (678)
Q Consensus 276 ~~L~L~~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-----~~~~~~~~~l~~L~~ 350 (678)
+.+++..+ +...-...|.. . +|+.+.+. +.++......|.+|++|+.+.+.++.+. ...+.+|.+|++|+.
T Consensus 229 ~~l~l~~~-l~~I~~~aF~~-~-~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~ 304 (401)
T 4fdw_A 229 KTIEIPEN-VSTIGQEAFRE-S-GITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLAR 304 (401)
T ss_dssp CCEECCTT-CCEECTTTTTT-C-CCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCE
T ss_pred CEEecCCC-ccCcccccccc-C-CccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCe
Confidence 55555543 22222233333 2 36666663 3344444556666777777766665443 334456667777777
Q ss_pred eeccCccccccCCccccCCCCCcEEeccCCccCccCCCCCCCcCCCceEecCCCccc
Q 038612 351 LYLYGNSLEGNIPSSLGNLTLLTKLALDFNNLQGNIPSSLGSCQNLMELIVSHNKLN 407 (678)
Q Consensus 351 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 407 (678)
+++.+ .+.......|.+|++|+.+.+..+ +...-..+|.++ +|+.+++++|.+.
T Consensus 305 l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 305 FEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp ECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred EEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence 77763 355455556667777777777543 444455566666 6777777666544
No 136
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.52 E-value=1.4e-12 Score=136.07 Aligned_cols=329 Identities=10% Similarity=0.034 Sum_probs=165.6
Q ss_pred ccCCCCCCCCEEECCCCCCccccChhhcCCccCcEEeccCCCCccCCCccCCCCCCCCEEEcccccccccCcccccCCCC
Q 038612 92 IGYSSWSKLEKLSIAVNHLRGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISS 171 (678)
Q Consensus 92 ~~~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 171 (678)
.+|.++.+|+.+.+.. .++.....+|.+|++|+.+++..+ ++..-...|.++++|+.+.+..+ +......+|.++..
T Consensus 65 ~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~ 141 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDF 141 (394)
T ss_dssp TTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCC
T ss_pred HHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccc
Confidence 3456666666666653 354445556666666666666543 33344445666666666555433 33234444555443
Q ss_pred CcEEECCCCCCCccCChhhhcCCCCCCEEEcccCcCCCCCCccCcCCCCCcEEeccCCcceeccCCCCCCCCCCCeEEcc
Q 038612 172 LEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPHSLSNASNLIELNLGQNHFTGKVSIDFNGLSDLAWLSFE 251 (678)
Q Consensus 172 L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 251 (678)
++........ .+....+..+.+|+.+.+..+. .......|.++.+|+.+.+..+ +.......|.++..|+.+.+.
T Consensus 142 ~~~~~~~~~~---~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~ 216 (394)
T 4fs7_A 142 KEITIPEGVT---VIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFP 216 (394)
T ss_dssp SEEECCTTCC---EECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCC
T ss_pred cccccCcccc---ccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecC
Confidence 3332222211 1222223355556655554432 2233344555555555555443 333444445555555554443
Q ss_pred cCcccccCCCCcccccccCCCCCCcEEEcccCCCCcccChhHhhccccCcEEEccCcceeccCCccCcCCcccccccccc
Q 038612 252 ANNLGAEASNDLDFVFSLTNCSKLEWLELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHL 331 (678)
Q Consensus 252 ~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~ 331 (678)
.+..... .....+.. |+.+.+... +.......+..+..++.+.+..
T Consensus 217 ~~~~~i~--------~~~~~~~~-------------------------l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~ 262 (394)
T 4fs7_A 217 NSLYYLG--------DFALSKTG-------------------------VKNIIIPDS-FTELGKSVFYGCTDLESISIQN 262 (394)
T ss_dssp TTCCEEC--------TTTTTTCC-------------------------CCEEEECTT-CCEECSSTTTTCSSCCEEEECC
T ss_pred CCceEee--------hhhcccCC-------------------------CceEEECCC-ceecccccccccccceeEEcCC
Confidence 3321110 01112233 444444322 1112233445555555555554
Q ss_pred ceeeeccCcccCCCcccceeeccCccccccCCccccCCCCCcEEeccCCccCccCCCCCCCcCCCceEecCCCccccccC
Q 038612 332 NQLIGTIPHVIGSLKNLQLLYLYGNSLEGNIPSSLGNLTLLTKLALDFNNLQGNIPSSLGSCQNLMELIVSHNKLNGTLP 411 (678)
Q Consensus 332 n~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p 411 (678)
+.. ......|..+..++.+.+..+.+. ...|..+.+|+.+.+..+ +......+|.+|.+|+.+++.++ +...-.
T Consensus 263 ~~~-~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~ 336 (394)
T 4fs7_A 263 NKL-RIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGK 336 (394)
T ss_dssp TTC-EECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECT
T ss_pred Ccc-eeeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhH
Confidence 422 133345556666666655544322 234556666666666543 44344455666666666666543 332223
Q ss_pred cccccccccceEEEcCCCcccccCCccccCcccCCeeecccCcccccCCccccCCCCCCEE
Q 038612 412 QQILEIRTLSFQLDLSNNLLSGYLPFRVGNLKNLARLDISMNHFFGEIPATLSACTSLEYL 472 (678)
Q Consensus 412 ~~~~~~~~l~~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L 472 (678)
..+.++..| +.+++..+ ++.....+|.++++|+.+++..+ ++ .+...|.++++|+.+
T Consensus 337 ~aF~~c~~L-~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 337 RSFRGCTSL-SNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp TTTTTCTTC-CEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred HhccCCCCC-CEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 344455555 55666554 55455667888999999999765 33 334578888888765
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.50 E-value=2.9e-14 Score=130.75 Aligned_cols=132 Identities=19% Similarity=0.242 Sum_probs=82.1
Q ss_pred CCCCCCCCEEECCCCCCccccChhhcCCc-cCcEEeccCCCCccCCCccCCCCCCCCEEEcccccccccCcccccCCCCC
Q 038612 94 YSSWSKLEKLSIAVNHLRGQLPASIGNLS-ALQAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSL 172 (678)
Q Consensus 94 ~~~l~~L~~L~Ls~n~~~~~~~~~l~~l~-~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 172 (678)
+..+++|+.|++++|.++. ++. +..+. +|++|++++|.+++. ..|..+++|++|++++|.+++..+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 4456667777777777763 343 33333 777777777777654 456777777777777777765444445667777
Q ss_pred cEEECCCCCCCccCCh--hhhcCCCCCCEEEcccCcCCCCCCcc----CcCCCCCcEEeccCCcce
Q 038612 173 EMIFLPANRLEGILPL--NIGFNLPNLKSLIVAQNNLTGPIPHS----LSNASNLIELNLGQNHFT 232 (678)
Q Consensus 173 ~~L~l~~n~~~~~~p~--~~~~~l~~L~~L~l~~n~l~~~~~~~----l~~l~~L~~L~L~~n~l~ 232 (678)
++|++++|.+. .+|. .+. .+++|++|++++|.++. +|.. +..+++|+.|++++|...
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~-~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLA-SLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGG-GCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CEEECCCCcCC-cchhhHhhh-cCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHH
Confidence 77777777765 3443 333 56667777777776653 3332 566666666666666543
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.46 E-value=1e-13 Score=127.02 Aligned_cols=104 Identities=24% Similarity=0.232 Sum_probs=76.5
Q ss_pred eEEEcCCCcccccCCccccCcccCCeeecccCcccccCCccccCCCCCCEEECcCCccccccCc--cccCCCCCCEEECC
Q 038612 422 FQLDLSNNLLSGYLPFRVGNLKNLARLDISMNHFFGEIPATLSACTSLEYLYMQGNSFGGRIPL--SLISLKSLKVLDLS 499 (678)
Q Consensus 422 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~ls 499 (678)
+.|++++|.+++. ..+..+++|++|++++|++++..+..+..+++|++|++++|++.. +|. .+..+++|+.|+++
T Consensus 45 ~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~ 121 (176)
T 1a9n_A 45 DAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKSLTYLCIL 121 (176)
T ss_dssp SEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTTCCEEECC
T ss_pred CEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCc-chhhHhhhcCCCCCEEEec
Confidence 4444555544443 346677888888888888886555556788888888888888854 444 77888889999999
Q ss_pred CCcccccCCcc----CCCCCCCCEEeCCcCccee
Q 038612 500 RNNLSGKIPEY----LENLPFLQYLDLSYNHFEG 529 (678)
Q Consensus 500 ~n~l~~~~p~~----l~~l~~L~~L~l~~n~l~~ 529 (678)
+|.++ .+|.. +..+++|+.||+++|....
T Consensus 122 ~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 122 RNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp SSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 99888 44553 7788899999998887653
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.43 E-value=5.9e-16 Score=145.10 Aligned_cols=134 Identities=21% Similarity=0.298 Sum_probs=89.5
Q ss_pred CCCCEEECCCCCCccccCh------hhcCCccCcEEeccCCCCccCCCccCCCCCCCCEEEcccccccccCcccccCCCC
Q 038612 98 SKLEKLSIAVNHLRGQLPA------SIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISS 171 (678)
Q Consensus 98 ~~L~~L~Ls~n~~~~~~~~------~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 171 (678)
+.++.++++.+.+.+..|. .+..+++|++|++++|.+++ +| .+.++++|++|++++|.++ .+|..+..+++
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~ 94 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADT 94 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHH
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCc
Confidence 3444455555555555444 77777788888888777774 55 6777777888888877777 56666666777
Q ss_pred CcEEECCCCCCCccCChhhhcCCCCCCEEEcccCcCCCCCC-ccCcCCCCCcEEeccCCcceeccCC
Q 038612 172 LEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIP-HSLSNASNLIELNLGQNHFTGKVSI 237 (678)
Q Consensus 172 L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~~~~~ 237 (678)
|++|++++|.+++ +| .+. .+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..|.
T Consensus 95 L~~L~L~~N~l~~-l~-~~~-~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 95 LEELWISYNQIAS-LS-GIE-KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp CSEEEEEEEECCC-HH-HHH-HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred CCEEECcCCcCCc-CC-ccc-cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 7777777777774 34 344 66777777777777764322 3566777777777777777655443
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.43 E-value=2e-15 Score=141.43 Aligned_cols=130 Identities=28% Similarity=0.270 Sum_probs=60.5
Q ss_pred ccceeeccCccccccCCc------cccCCCCCcEEeccCCccCccCCCCCCCcCCCceEecCCCccccccCccccccccc
Q 038612 347 NLQLLYLYGNSLEGNIPS------SLGNLTLLTKLALDFNNLQGNIPSSLGSCQNLMELIVSHNKLNGTLPQQILEIRTL 420 (678)
Q Consensus 347 ~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l 420 (678)
.++.++++.+.+.+..|. .+..+++|++|++++|.+.+ +| .+..+++|+.|++++|++. .+|..+..++.+
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L 95 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL 95 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence 344444444444443333 44555555555555555554 33 4555555555555555554 344333333333
Q ss_pred ceEEEcCCCcccccCCccccCcccCCeeecccCcccccCC-ccccCCCCCCEEECcCCccccc
Q 038612 421 SFQLDLSNNLLSGYLPFRVGNLKNLARLDISMNHFFGEIP-ATLSACTSLEYLYMQGNSFGGR 482 (678)
Q Consensus 421 ~~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~ 482 (678)
+.|++++|.+++. | .+..+++|++|++++|++++..+ ..+..+++|++|++++|.+.+.
T Consensus 96 -~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 96 -EELWISYNQIASL-S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp -SEEEEEEEECCCH-H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred -CEEECcCCcCCcC-C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 3344444444331 1 23444555555555555543211 2344555555555555555444
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.42 E-value=6.5e-13 Score=120.66 Aligned_cols=108 Identities=20% Similarity=0.162 Sum_probs=84.3
Q ss_pred eEEEcCCCcccccCCccccCcccCCeeecccCcccccCCccccCCCCCCEEECcCCccccccCccccCCCCCCEEECCCC
Q 038612 422 FQLDLSNNLLSGYLPFRVGNLKNLARLDISMNHFFGEIPATLSACTSLEYLYMQGNSFGGRIPLSLISLKSLKVLDLSRN 501 (678)
Q Consensus 422 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n 501 (678)
+.+++++|.++. +|..+. ++|++|+|++|++++..|..|..+++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus 12 ~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 356666666664 343332 67888888888888777888888888888888888888777777888888888888888
Q ss_pred cccccCCccCCCCCCCCEEeCCcCcceeeCC
Q 038612 502 NLSGKIPEYLENLPFLQYLDLSYNHFEGQVP 532 (678)
Q Consensus 502 ~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p 532 (678)
++++..+..|..+++|++|++++|++.+..+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 8887777778888888888888888887655
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.39 E-value=1.4e-12 Score=118.82 Aligned_cols=108 Identities=21% Similarity=0.225 Sum_probs=83.8
Q ss_pred eEEEcCCCcccccCCccccCcccCCeeecccCcccccCCccccCCCCCCEEECcCCccccccCccccCCCCCCEEECCCC
Q 038612 422 FQLDLSNNLLSGYLPFRVGNLKNLARLDISMNHFFGEIPATLSACTSLEYLYMQGNSFGGRIPLSLISLKSLKVLDLSRN 501 (678)
Q Consensus 422 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n 501 (678)
..+++++|.+. .+|..+. ++|++|+|++|++++..|..|..+++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 45666766665 3444333 67888888888888777888888888888888888888776667788888888888888
Q ss_pred cccccCCccCCCCCCCCEEeCCcCcceeeCC
Q 038612 502 NLSGKIPEYLENLPFLQYLDLSYNHFEGQVP 532 (678)
Q Consensus 502 ~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p 532 (678)
++++..+..|..+++|++|++++|++.+..+
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 8887666668888888888888888876544
No 143
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.38 E-value=6.2e-11 Score=123.67 Aligned_cols=135 Identities=14% Similarity=0.164 Sum_probs=75.5
Q ss_pred ccCcccCCCcccceeeccCccccccCCccccCCCCCcEEeccCCccCccCCCCCCCcCCCceEecCCCccccccCccccc
Q 038612 337 TIPHVIGSLKNLQLLYLYGNSLEGNIPSSLGNLTLLTKLALDFNNLQGNIPSSLGSCQNLMELIVSHNKLNGTLPQQILE 416 (678)
Q Consensus 337 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~ 416 (678)
....+|..+..|+.+.+..+... .....|.+++.|+.+.+.. .+.......|.+|.+|+.+++.++
T Consensus 256 i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~------------ 321 (394)
T 4gt6_A 256 IETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG------------ 321 (394)
T ss_dssp ECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT------------
T ss_pred cccceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc------------
Confidence 33456667777777776554322 3445566677777777653 344444556666777777665432
Q ss_pred ccccceEEEcCCCcccccCCccccCcccCCeeecccCcccccCCccccCCCCCCEEECcCCccccccCccccCCCCCCEE
Q 038612 417 IRTLSFQLDLSNNLLSGYLPFRVGNLKNLARLDISMNHFFGEIPATLSACTSLEYLYMQGNSFGGRIPLSLISLKSLKVL 496 (678)
Q Consensus 417 ~~~l~~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 496 (678)
++.....+|.++.+|+.+.|..+ ++.....+|.+|++|+.+++.++.... ..+..+.+|+.+
T Consensus 322 --------------v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i 383 (394)
T 4gt6_A 322 --------------ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNL 383 (394)
T ss_dssp --------------CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC---
T ss_pred --------------ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEE
Confidence 11123345677777777777654 554555677788888888887765432 345666777777
Q ss_pred ECCCCcc
Q 038612 497 DLSRNNL 503 (678)
Q Consensus 497 ~ls~n~l 503 (678)
.+..+.+
T Consensus 384 ~i~~~~~ 390 (394)
T 4gt6_A 384 PVAPGSI 390 (394)
T ss_dssp -------
T ss_pred EeCCCCE
Confidence 7766544
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.37 E-value=2.8e-12 Score=116.45 Aligned_cols=104 Identities=20% Similarity=0.284 Sum_probs=56.1
Q ss_pred cEEeccCCCCccCCCccCCCCCCCCEEEcccccccccCcccccCCCCCcEEECCCCCCCccCChhhhcCCCCCCEEEccc
Q 038612 125 QAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQ 204 (678)
Q Consensus 125 ~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~ 204 (678)
+.+++++|.++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|++++|++++ +|...+..+++|++|++++
T Consensus 12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV-LPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCc-cChhhccCCCCCCEEECCC
Confidence 45555555554 3444332 455555555555555555555555555555555555552 3333323555666666666
Q ss_pred CcCCCCCCccCcCCCCCcEEeccCCcce
Q 038612 205 NNLTGPIPHSLSNASNLIELNLGQNHFT 232 (678)
Q Consensus 205 n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 232 (678)
|++++..+..|.++++|++|++++|.+.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 6655544445556666666666666554
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.36 E-value=4.1e-12 Score=115.75 Aligned_cols=104 Identities=17% Similarity=0.285 Sum_probs=51.9
Q ss_pred cEEeccCCCCccCCCccCCCCCCCCEEEcccccccccCcccccCCCCCcEEECCCCCCCccCChhhhcCCCCCCEEEccc
Q 038612 125 QAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQ 204 (678)
Q Consensus 125 ~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~ 204 (678)
+.+++++|.+. .+|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|++++ +|...+..+++|++|++++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc-cChhHhCCcchhhEEECCC
Confidence 34444444443 3444332 455555555555554445555555555555555555553 3333322455555555555
Q ss_pred CcCCCCCCccCcCCCCCcEEeccCCcce
Q 038612 205 NNLTGPIPHSLSNASNLIELNLGQNHFT 232 (678)
Q Consensus 205 n~l~~~~~~~l~~l~~L~~L~L~~n~l~ 232 (678)
|.+++..+..|.++++|++|++++|.+.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcc
Confidence 5555443334555555555555555544
No 146
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.27 E-value=8.2e-10 Score=115.11 Aligned_cols=320 Identities=10% Similarity=0.084 Sum_probs=160.3
Q ss_pred CCCccCCCCC-CCCEEEcccccccccCcccccCCCCCcEEECCCCC---CCccCChhhhcCCCCCCEEEcccCcCCCCCC
Q 038612 137 RIPESLGQLR-SLKFLNVEENNFSGMVPVSIYNISSLEMIFLPANR---LEGILPLNIGFNLPNLKSLIVAQNNLTGPIP 212 (678)
Q Consensus 137 ~~p~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~---~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~ 212 (678)
.-..+|.+++ .|+.+.+..+ ++.+...+|.++++|+.+.+..|. ++ .+....+..+.+|+.+.+..+ ++....
T Consensus 54 Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~~ 130 (394)
T 4gt6_A 54 IGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEIDS 130 (394)
T ss_dssp ECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEECT
T ss_pred cCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceehh
Confidence 3445677774 5888888754 665677788888888888887653 33 344444446666666665543 333444
Q ss_pred ccCcCCCCCcEEeccCCcceeccCCCCCCCCCCCeEEcccCcccccCCCCcccccccCCCCCCcEEEcccCCCCcccChh
Q 038612 213 HSLSNASNLIELNLGQNHFTGKVSIDFNGLSDLAWLSFEANNLGAEASNDLDFVFSLTNCSKLEWLELRKNQFGGNLPHF 292 (678)
Q Consensus 213 ~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~ 292 (678)
..|..+.+|+.+.+..+ +.......|..+..|+.+.+..+ +...... .+. ...|+.+.+..+-
T Consensus 131 ~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~------aF~-~~~l~~i~ip~~~-------- 193 (394)
T 4gt6_A 131 EAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEER------AFT-GTALTQIHIPAKV-------- 193 (394)
T ss_dssp TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTT------TTT-TCCCSEEEECTTC--------
T ss_pred hhhhhhcccccccccce-eeeecccceecccccccccccce-eeEeccc------ccc-ccceeEEEECCcc--------
Confidence 55666667776666532 33344455555566665555433 2111111 111 1234444443221
Q ss_pred HhhccccCcEEEccCcceeccCCccCcCCccccccccccceeeeccC-------------cccCCCcccceeeccCcccc
Q 038612 293 IANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLIGTIP-------------HVIGSLKNLQLLYLYGNSLE 359 (678)
Q Consensus 293 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-------------~~~~~l~~L~~L~l~~n~l~ 359 (678)
.. .....+..+..++......+....... ..+.....+..+.+.. .+.
T Consensus 194 -----------------~~-i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~ 254 (394)
T 4gt6_A 194 -----------------TR-IGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVA 254 (394)
T ss_dssp -----------------CE-ECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEE
T ss_pred -----------------cc-cccchhhhccccceecccccccccccceeecccccccccccccccccccceEEcCC-cce
Confidence 11 122233334444333322221110000 0011111222222221 122
Q ss_pred ccCCccccCCCCCcEEeccCCccCccCCCCCCCcCCCceEecCCCccccccCcccccccccceEEEcCCCcccccCCccc
Q 038612 360 GNIPSSLGNLTLLTKLALDFNNLQGNIPSSLGSCQNLMELIVSHNKLNGTLPQQILEIRTLSFQLDLSNNLLSGYLPFRV 439 (678)
Q Consensus 360 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~L~l~~n~l~~~~~~~~ 439 (678)
......|.++..|+.+.+.++... .....|.++++|+.+.+ . +.++......|
T Consensus 255 ~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l-------------------------~-~~i~~I~~~aF 307 (394)
T 4gt6_A 255 RIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEF-------------------------S-SRITELPESVF 307 (394)
T ss_dssp EECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEEC-------------------------C-TTCCEECTTTT
T ss_pred EcccceeeecccccEEecccccce-ecCcccccccccccccC-------------------------C-CcccccCceee
Confidence 222334444555555554433221 22333444444444443 2 22233344567
Q ss_pred cCcccCCeeecccCcccccCCccccCCCCCCEEECcCCccccccCccccCCCCCCEEECCCCcccccCCccCCCCCCCCE
Q 038612 440 GNLKNLARLDISMNHFFGEIPATLSACTSLEYLYMQGNSFGGRIPLSLISLKSLKVLDLSRNNLSGKIPEYLENLPFLQY 519 (678)
Q Consensus 440 ~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~ 519 (678)
.++.+|+.++|..+ ++.....+|.+|.+|+.+.+..+ ++.....+|.++++|+.+++.++.... ..+..+.+|+.
T Consensus 308 ~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~ 382 (394)
T 4gt6_A 308 AGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQN 382 (394)
T ss_dssp TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC--
T ss_pred cCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCE
Confidence 77888888888764 55455667888888888888654 555556788888888888888876542 35666777877
Q ss_pred EeCCcCcc
Q 038612 520 LDLSYNHF 527 (678)
Q Consensus 520 L~l~~n~l 527 (678)
+.+..+.+
T Consensus 383 i~i~~~~~ 390 (394)
T 4gt6_A 383 LPVAPGSI 390 (394)
T ss_dssp --------
T ss_pred EEeCCCCE
Confidence 77765543
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.19 E-value=4.5e-11 Score=122.56 Aligned_cols=89 Identities=20% Similarity=0.221 Sum_probs=43.2
Q ss_pred hcCCccCcEEeccC-CCCccCCCccCCCCCCCCEEEcccccccccCcccccCCCCCcEEECCCCCCCccCChhhhcCCCC
Q 038612 118 IGNLSALQAFDVGE-NTLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPN 196 (678)
Q Consensus 118 l~~l~~L~~L~ls~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~ 196 (678)
+..+++|++|+|++ |.+.+..+..|.++++|++|+|++|.|++..|..|.++++|++|+|++|+++ .+|..++..++
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~- 104 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLS- 104 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTTCSCC-
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc-eeCHHHcccCC-
Confidence 44444555555553 5554444444555555555555555555444445555555555555555554 23333331222
Q ss_pred CCEEEcccCcCC
Q 038612 197 LKSLIVAQNNLT 208 (678)
Q Consensus 197 L~~L~l~~n~l~ 208 (678)
|++|++.+|.+.
T Consensus 105 L~~l~l~~N~~~ 116 (347)
T 2ifg_A 105 LQELVLSGNPLH 116 (347)
T ss_dssp CCEEECCSSCCC
T ss_pred ceEEEeeCCCcc
Confidence 555555555544
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.18 E-value=6.5e-11 Score=121.33 Aligned_cols=106 Identities=24% Similarity=0.164 Sum_probs=74.1
Q ss_pred EEcCCC-cccccCCccccCcccCCeeeccc-CcccccCCccccCCCCCCEEECcCCccccccCccccCCCCCCEEECCCC
Q 038612 424 LDLSNN-LLSGYLPFRVGNLKNLARLDISM-NHFFGEIPATLSACTSLEYLYMQGNSFGGRIPLSLISLKSLKVLDLSRN 501 (678)
Q Consensus 424 L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~-n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n 501 (678)
++.+++ .++. +|. +..+++|++|+|++ |.+.+..+..|..+++|++|+|++|++++..|..|.++++|+.|+|++|
T Consensus 13 v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 455555 5553 454 66677777777775 7777666667777777777777777777777777777777777777777
Q ss_pred cccccCCccCCCCCCCCEEeCCcCcceeeCC
Q 038612 502 NLSGKIPEYLENLPFLQYLDLSYNHFEGQVP 532 (678)
Q Consensus 502 ~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p 532 (678)
+|++..+..+..++ |+.|++.+|++.+...
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~ 120 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLHCSCA 120 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCCCCGG
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCccCCCc
Confidence 77766555565555 7777777777766543
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.17 E-value=1.7e-12 Score=133.60 Aligned_cols=88 Identities=19% Similarity=0.278 Sum_probs=61.7
Q ss_pred cccCCeeecccCccccc----CCccccCCCCCCEEECcCCccccc----cCccccCCCCCCEEECCCCccccc----CCc
Q 038612 442 LKNLARLDISMNHFFGE----IPATLSACTSLEYLYMQGNSFGGR----IPLSLISLKSLKVLDLSRNNLSGK----IPE 509 (678)
Q Consensus 442 l~~L~~L~Ls~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~ls~n~l~~~----~p~ 509 (678)
.++|++|+|++|.+++. ++..+..+++|++|+|++|.++.. ++..+...++|+.|+|++|.++.. ++.
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~ 233 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR 233 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH
Confidence 46788888888877642 333446677888888888887643 245566677888888888888753 334
Q ss_pred cCCCCCCCCEEeCCcCccee
Q 038612 510 YLENLPFLQYLDLSYNHFEG 529 (678)
Q Consensus 510 ~l~~l~~L~~L~l~~n~l~~ 529 (678)
.+...++|++|++++|++..
T Consensus 234 ~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 234 AAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHCSSCCEEECTTSSCCH
T ss_pred HHHhCCCCCEEeccCCCCCH
Confidence 45566788888888887753
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.17 E-value=1e-12 Score=135.23 Aligned_cols=111 Identities=14% Similarity=0.125 Sum_probs=48.8
Q ss_pred ccCcEEeccCCCCccCCCccC----C-CCCCCCEEEcccccccccCcccc-cCCCCCcEEECCCCCCCccCChhhh----
Q 038612 122 SALQAFDVGENTLHGRIPESL----G-QLRSLKFLNVEENNFSGMVPVSI-YNISSLEMIFLPANRLEGILPLNIG---- 191 (678)
Q Consensus 122 ~~L~~L~ls~n~l~~~~p~~~----~-~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~n~~~~~~p~~~~---- 191 (678)
++|+.|++++|.++......+ . ..++|++|+|++|.++......+ ..+++|++|+|++|.++......+.
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 456666666666553222222 1 12456666666665543222222 1234555555555555432222221
Q ss_pred cCCCCCCEEEcccCcCCCC----CCccCcCCCCCcEEeccCCcce
Q 038612 192 FNLPNLKSLIVAQNNLTGP----IPHSLSNASNLIELNLGQNHFT 232 (678)
Q Consensus 192 ~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~ 232 (678)
...++|++|+|++|.++.. ++..+..+++|++|+|++|.+.
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~ 196 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG 196 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCC
Confidence 1234455555555554321 1222234444555555544443
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.03 E-value=9e-08 Score=99.10 Aligned_cols=65 Identities=8% Similarity=0.025 Sum_probs=32.7
Q ss_pred EEcCCCcccccCCccccCcccCCeeecccCcccccCCccccCCCCCCEEECcCCccccccCccccCC
Q 038612 424 LDLSNNLLSGYLPFRVGNLKNLARLDISMNHFFGEIPATLSACTSLEYLYMQGNSFGGRIPLSLISL 490 (678)
Q Consensus 424 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 490 (678)
+.+.++.++.....+|.++.+|+.++|..+ ++.....+|.+|++|+.+.+..+ ++.+-..+|.++
T Consensus 291 i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 291 VVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred ccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence 333333333333445555666666666543 44344455666666666666543 333344455554
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.00 E-value=5.6e-08 Score=100.64 Aligned_cols=317 Identities=10% Similarity=0.032 Sum_probs=166.7
Q ss_pred hhcCCccCcEEeccCCCCccCCCccCCCCCCCCEEEcccccccccCcccccCCCCCcEEECCCCCCCccCChhhhcCCCC
Q 038612 117 SIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPN 196 (678)
Q Consensus 117 ~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~ 196 (678)
.+....+|+.+.+.. .++..-..+|.++.+|+.+++..+ ++.+...+|.++ +|+.+.+..+ ++ .++...+ ...+
T Consensus 41 ~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF-~~~~ 114 (379)
T 4h09_A 41 WYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVF-QGTD 114 (379)
T ss_dssp TGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTT-TTCC
T ss_pred ccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-Eecccee-ccCC
Confidence 345566777777764 355455567888888888888643 554555666665 5666665433 22 3333333 2335
Q ss_pred CCEEEcccCcCCCCCCccCcCCCCCcEEeccCCcceeccCCCCCCCCCCCeEEcccCcccccCCCCcccccccCCCCCCc
Q 038612 197 LKSLIVAQNNLTGPIPHSLSNASNLIELNLGQNHFTGKVSIDFNGLSDLAWLSFEANNLGAEASNDLDFVFSLTNCSKLE 276 (678)
Q Consensus 197 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~ 276 (678)
|+.+.+..+ ++......|.++ +|+.+.+..+ ++......| ..+..++
T Consensus 115 L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f------------------------------~~~~~l~ 161 (379)
T 4h09_A 115 LDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIG------------------------------YKAENLE 161 (379)
T ss_dssp CSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTT------------------------------TTCTTCC
T ss_pred cccccCCCc-cccccccccccc-eeeeeeccce-eeccccchh------------------------------ccccccc
Confidence 666666543 221222233332 3444333221 222222233 3344444
Q ss_pred EEEcccCCCCcccChhHhhccccCcEEEccCcceeccCCccCcCCccccccccccceeeeccCcccCCCcccceeeccCc
Q 038612 277 WLELRKNQFGGNLPHFIANLSKTMTIIDMGENKLSGTIPLGIGNLVNLNLFSLHLNQLIGTIPHVIGSLKNLQLLYLYGN 356 (678)
Q Consensus 277 ~L~L~~n~~~~~~p~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 356 (678)
.+.+..+.......... .. ... ......+.....+..+.+.... .......+..+.+|+.+.+..+
T Consensus 162 ~~~~~~~~~~~~~~~~~-~~---------~~~---~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~ 227 (379)
T 4h09_A 162 KIEVSSNNKNYVAENYV-LY---------NKN---KTILESYPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG 227 (379)
T ss_dssp EEEECTTCSSEEEETTE-EE---------ETT---SSEEEECCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT
T ss_pred ccccccccceeecccce-ec---------ccc---cceeccccccccccccccccce-eEEeecccccccccceeeeccc
Confidence 44443322110000000 00 000 0001112222223332222211 1122234455556666665443
Q ss_pred cccccCCccccCCCCCcEEeccCCccCccCCCCCCCcCCCceEecCCCccccccCcccccccccceEEEcCCCcccccCC
Q 038612 357 SLEGNIPSSLGNLTLLTKLALDFNNLQGNIPSSLGSCQNLMELIVSHNKLNGTLPQQILEIRTLSFQLDLSNNLLSGYLP 436 (678)
Q Consensus 357 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~~~~l~~~L~l~~n~l~~~~~ 436 (678)
+.......+.++..|+.+.+..+ ++......|.++.+|+.+.+..+ +.....
T Consensus 228 -~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~--------------------------i~~i~~ 279 (379)
T 4h09_A 228 -VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK--------------------------VKTVPY 279 (379)
T ss_dssp -CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC--------------------------CSEECT
T ss_pred -eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc--------------------------ceeccc
Confidence 22233445556666666666543 33334445555566665554321 222334
Q ss_pred ccccCcccCCeeecccCcccccCCccccCCCCCCEEECcCCccccccCccccCCCCCCEEECCCCcccccCCccCCCCCC
Q 038612 437 FRVGNLKNLARLDISMNHFFGEIPATLSACTSLEYLYMQGNSFGGRIPLSLISLKSLKVLDLSRNNLSGKIPEYLENLPF 516 (678)
Q Consensus 437 ~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~ 516 (678)
..|.++++|+.+++.++.++.....+|.+|.+|+.+.|.++ ++.+...+|.++++|+.+.+..+ ++..-..+|.+++.
T Consensus 280 ~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~ 357 (379)
T 4h09_A 280 LLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSI 357 (379)
T ss_dssp TTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSC
T ss_pred cccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCC
Confidence 46788899999999988888777788999999999999765 66566778999999999999765 55455667776653
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.78 E-value=3e-09 Score=108.24 Aligned_cols=140 Identities=18% Similarity=0.260 Sum_probs=68.6
Q ss_pred CCCCCCEEEcccCcCCCCCCccCcCCCCCcEEeccCCcceeccCCCCC--CCCCCCeEEcccC--cccccC-CCCccccc
Q 038612 193 NLPNLKSLIVAQNNLTGPIPHSLSNASNLIELNLGQNHFTGKVSIDFN--GLSDLAWLSFEAN--NLGAEA-SNDLDFVF 267 (678)
Q Consensus 193 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~l~~n--~l~~~~-~~~~~~~~ 267 (678)
.+|+|+.|++++|.-. .++. +. +++|++|++..+.+.......+. .+++|+.|+|+.+ ...+.. ...+....
T Consensus 170 ~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l 246 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF 246 (362)
T ss_dssp TCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS
T ss_pred cCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHH
Confidence 5667777777665211 1222 32 56777777766665433322222 5667777766421 111110 00000011
Q ss_pred ccCCCCCCcEEEcccCCCCcccChhHhhc--cccCcEEEccCcceecc----CCccCcCCccccccccccceee
Q 038612 268 SLTNCSKLEWLELRKNQFGGNLPHFIANL--SKTMTIIDMGENKLSGT----IPLGIGNLVNLNLFSLHLNQLI 335 (678)
Q Consensus 268 ~l~~~~~L~~L~L~~n~~~~~~p~~~~~~--~~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~~~ 335 (678)
....+++|++|+|.+|.+.+..+..+... .++|+.|+|+.|.+.+. ++..+..+++|+.|++++|.++
T Consensus 247 ~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 247 SKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp CTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred hcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 11346788888888888765544444431 12366666666666542 2222233444444555444443
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.77 E-value=1.8e-09 Score=109.93 Aligned_cols=147 Identities=16% Similarity=0.152 Sum_probs=63.2
Q ss_pred CCCCCCCEEEcccccccccCcccccCCCCCcEEECCCCCCCccCChhhh-cCCCCCCEEEccc--CcCCCC-----CCcc
Q 038612 143 GQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFLPANRLEGILPLNIG-FNLPNLKSLIVAQ--NNLTGP-----IPHS 214 (678)
Q Consensus 143 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~-~~l~~L~~L~l~~--n~l~~~-----~~~~ 214 (678)
..+++|+.|+|++|.-. .++. +. +++|++|++..+.+.......+. ..+|+|++|+|+. +...+. +...
T Consensus 169 ~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~ 245 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245 (362)
T ss_dssp HTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred hcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence 34455555555554211 1121 22 45555665555544322222222 1456666666542 111000 0111
Q ss_pred C--cCCCCCcEEeccCCcceeccCCCC---CCCCCCCeEEcccCcccccCCCCcccccccCCCCCCcEEEcccCCCCccc
Q 038612 215 L--SNASNLIELNLGQNHFTGKVSIDF---NGLSDLAWLSFEANNLGAEASNDLDFVFSLTNCSKLEWLELRKNQFGGNL 289 (678)
Q Consensus 215 l--~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~ 289 (678)
+ ..+++|++|++.+|.+.+..+..+ ..+++|++|+++.|.+...... .+...+.++++|+.|++++|.+++..
T Consensus 246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~--~L~~~L~~l~~L~~L~L~~n~i~d~~ 323 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGAR--LLLDHVDKIKHLKFINMKYNYLSDEM 323 (362)
T ss_dssp SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHH--HHHTTHHHHTTCSEEECCSBBCCHHH
T ss_pred HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHH--HHHhhcccCCcceEEECCCCcCCHHH
Confidence 2 235666666666666543221111 1345555555555555442211 11122334455666666666555443
Q ss_pred ChhHh
Q 038612 290 PHFIA 294 (678)
Q Consensus 290 p~~~~ 294 (678)
-..+.
T Consensus 324 ~~~l~ 328 (362)
T 2ra8_A 324 KKELQ 328 (362)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 33333
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.69 E-value=6.7e-10 Score=106.99 Aligned_cols=81 Identities=20% Similarity=0.243 Sum_probs=45.7
Q ss_pred CCCCCCEEEcccccccc--cCcccccCCCCCcEEECCCCCCCccCChhhhcCCCCCCEEEcccCcCCCCCCc-------c
Q 038612 144 QLRSLKFLNVEENNFSG--MVPVSIYNISSLEMIFLPANRLEGILPLNIGFNLPNLKSLIVAQNNLTGPIPH-------S 214 (678)
Q Consensus 144 ~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~~l~~L~~L~l~~n~l~~~~~~-------~ 214 (678)
++++|++|+|++|.+++ .+|..+..+++|++|+|++|.+.+.-...-...+ +|++|+|++|.+.+..|. .
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHHH
Confidence 45666666666666665 3345555666666666666666643111111122 667777777766654442 2
Q ss_pred CcCCCCCcEEe
Q 038612 215 LSNASNLIELN 225 (678)
Q Consensus 215 l~~l~~L~~L~ 225 (678)
+..+++|+.||
T Consensus 247 l~~~P~L~~LD 257 (267)
T 3rw6_A 247 RERFPKLLRLD 257 (267)
T ss_dssp HHHCTTCCEES
T ss_pred HHHCcccCeEC
Confidence 45667777664
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.39 E-value=7.9e-08 Score=88.10 Aligned_cols=89 Identities=19% Similarity=0.205 Sum_probs=40.3
Q ss_pred CCCCCCCEEECCCC-CCccc----cChhhcCCccCcEEeccCCCCccC----CCccCCCCCCCCEEEccccccccc----
Q 038612 95 SSWSKLEKLSIAVN-HLRGQ----LPASIGNLSALQAFDVGENTLHGR----IPESLGQLRSLKFLNVEENNFSGM---- 161 (678)
Q Consensus 95 ~~l~~L~~L~Ls~n-~~~~~----~~~~l~~l~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~---- 161 (678)
...+.|++|+|++| .+... +...+...++|++|+|++|.+... +...+...++|++|+|++|.+...
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 44555666666655 55432 223344445555555555555421 122233334455555555554422
Q ss_pred CcccccCCCCCcEEEC--CCCCCC
Q 038612 162 VPVSIYNISSLEMIFL--PANRLE 183 (678)
Q Consensus 162 ~~~~~~~l~~L~~L~l--~~n~~~ 183 (678)
+...+...++|++|++ ++|.+.
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~i~ 136 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQPLG 136 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCC
T ss_pred HHHHHHhCCCceEEEecCCCCCCC
Confidence 2233344444444444 444443
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.36 E-value=7.1e-08 Score=88.41 Aligned_cols=118 Identities=13% Similarity=0.106 Sum_probs=66.1
Q ss_pred ccChhhcCCccCcEEeccCC-CCccC----CCccCCCCCCCCEEEccccccccc----CcccccCCCCCcEEECCCCCCC
Q 038612 113 QLPASIGNLSALQAFDVGEN-TLHGR----IPESLGQLRSLKFLNVEENNFSGM----VPVSIYNISSLEMIFLPANRLE 183 (678)
Q Consensus 113 ~~~~~l~~l~~L~~L~ls~n-~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~~~ 183 (678)
.+...+...+.|++|+|++| .+... +...+...++|++|+|++|.+... +...+...++|++|+|++|.+.
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 34455667778888888887 76532 334455667777788877777532 2334455566777777777665
Q ss_pred ccC----ChhhhcCCCCCCEEEc--ccCcCCCC----CCccCcCCCCCcEEeccCCcc
Q 038612 184 GIL----PLNIGFNLPNLKSLIV--AQNNLTGP----IPHSLSNASNLIELNLGQNHF 231 (678)
Q Consensus 184 ~~~----p~~~~~~l~~L~~L~l--~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l 231 (678)
..- ...+. ..++|++|++ ++|.++.. +...+...++|++|++++|.+
T Consensus 107 ~~g~~~l~~~L~-~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 107 GSGILALVEALQ-SNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHHHGGG-GCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHHHHH-hCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 432 11222 3445666666 55555422 122333345555555555544
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.17 E-value=1.3e-06 Score=83.96 Aligned_cols=139 Identities=20% Similarity=0.236 Sum_probs=96.4
Q ss_pred CCCCcccccccCCCCcEEEEEcCCC-------CCCCc----------------------ccCCCCCCCCE--EECCCCCC
Q 038612 62 NLCQWTGVTCGRRHQRVTELYLRNQ-------SLGAD----------------------IGYSSWSKLEK--LSIAVNHL 110 (678)
Q Consensus 62 ~~c~w~gv~c~~~~~~v~~l~l~~~-------~l~~~----------------------~~~~~l~~L~~--L~Ls~n~~ 110 (678)
..|.|.|+.|+....+|..+...+. .+... ..+...+.|+. ++++.|..
T Consensus 76 ~l~~~~g~i~~~~~~ki~~~v~~~~~~~~~~~~l~~~~~~~Lk~~l~~ryn~~~~~LdLs~l~~dp~L~~~~l~l~~N~~ 155 (267)
T 3rw6_A 76 ALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRR 155 (267)
T ss_dssp HHHHTTSSCBCTTSCBCCCEEEECCCCHHHHTSCCHHHHHHHHHHHHHTEETTTTEEECTTGGGCHHHHHTTCCCCTTSH
T ss_pred HHHhcCcEEECCCCCEEEEEEecCCCcccccccCCHHHHHHHHHHHHhccchhccccCHHHcCCCcchhhcCccccCCHH
Confidence 3589999999876666655544331 12210 22344455655 67777743
Q ss_pred c---cccChhhcCCccCcEEeccCCCCcc--CCCccCCCCCCCCEEEcccccccccCcccccCCC--CCcEEECCCCCCC
Q 038612 111 R---GQLPASIGNLSALQAFDVGENTLHG--RIPESLGQLRSLKFLNVEENNFSGMVPVSIYNIS--SLEMIFLPANRLE 183 (678)
Q Consensus 111 ~---~~~~~~l~~l~~L~~L~ls~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~l~~n~~~ 183 (678)
. +.+.....++++|+.|+|++|.+++ .+|..+..+++|++|+|++|.+++. ..+..+. +|++|+|++|.+.
T Consensus 156 ~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 156 SCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTG
T ss_pred HHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCc
Confidence 2 2223333578999999999999997 4456677899999999999999865 2344444 9999999999999
Q ss_pred ccCCh------hhhcCCCCCCEEEc
Q 038612 184 GILPL------NIGFNLPNLKSLIV 202 (678)
Q Consensus 184 ~~~p~------~~~~~l~~L~~L~l 202 (678)
+.+|. .+...+|+|+.||-
T Consensus 234 ~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 234 DTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp GGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred cccCcchhHHHHHHHHCcccCeECC
Confidence 87763 23447899999863
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.04 E-value=9.8e-07 Score=78.54 Aligned_cols=84 Identities=15% Similarity=0.071 Sum_probs=51.6
Q ss_pred ccCCeeecccCcccccCCccccCCCCCCEEECcCCc-cccccCccccCC----CCCCEEECCCCc-ccccCCccCCCCCC
Q 038612 443 KNLARLDISMNHFFGEIPATLSACTSLEYLYMQGNS-FGGRIPLSLISL----KSLKVLDLSRNN-LSGKIPEYLENLPF 516 (678)
Q Consensus 443 ~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l----~~L~~L~ls~n~-l~~~~p~~l~~l~~ 516 (678)
..|++||+++|.+++.....+..+++|++|+|++|. ++...-..+..+ ++|++|+|++|. ++..--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 356677777776665555556667777777777774 544333334432 357777777764 65543344566777
Q ss_pred CCEEeCCcCc
Q 038612 517 LQYLDLSYNH 526 (678)
Q Consensus 517 L~~L~l~~n~ 526 (678)
|++|++++|+
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 7777777765
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.98 E-value=2.2e-06 Score=76.23 Aligned_cols=59 Identities=8% Similarity=0.059 Sum_probs=30.5
Q ss_pred ccCcEEeccCCCCccCCCccCCCCCCCCEEEccccc-ccccCcccccCC----CCCcEEECCCC
Q 038612 122 SALQAFDVGENTLHGRIPESLGQLRSLKFLNVEENN-FSGMVPVSIYNI----SSLEMIFLPAN 180 (678)
Q Consensus 122 ~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l----~~L~~L~l~~n 180 (678)
.+|+.||++++.++..--..+.++++|++|+|++|. +++.--..+..+ ++|++|++++|
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C 124 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISC 124 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESC
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCC
Confidence 356666666666554444445566666666666653 443333333332 24555555544
No 161
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=97.85 E-value=3.7e-06 Score=84.36 Aligned_cols=47 Identities=26% Similarity=0.427 Sum_probs=35.5
Q ss_pred cccccceeccCCCceEEEEEECC-----CCeEEEEEEeeccCCCcccCcccC
Q 038612 632 EFSTSNMIGQGSFGIVYKGIFSE-----NGMVVAVKVINLNQKGGFRSFVAE 678 (678)
Q Consensus 632 ~f~~~~~iG~G~~G~Vykg~l~~-----~g~~vAvK~l~~~~~~~~~~F~~E 678 (678)
+|.-.+.||+|+||+||+|++.+ .|+.||||+++..+.+..++|.+|
T Consensus 42 d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E 93 (329)
T 4aoj_A 42 DIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQRE 93 (329)
T ss_dssp GEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHH
T ss_pred HeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHH
Confidence 45556789999999999999852 248999999976555455567665
No 162
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=97.82 E-value=2.8e-06 Score=84.34 Aligned_cols=53 Identities=25% Similarity=0.351 Sum_probs=33.8
Q ss_pred HHHHHhhhcccccceeccCCCceEEEEEECC-----CCeEEEEEEeeccCC-CcccCcccC
Q 038612 624 AALRKATNEFSTSNMIGQGSFGIVYKGIFSE-----NGMVVAVKVINLNQK-GGFRSFVAE 678 (678)
Q Consensus 624 ~el~~at~~f~~~~~iG~G~~G~Vykg~l~~-----~g~~vAvK~l~~~~~-~~~~~F~~E 678 (678)
.|+..++-.| .+.||+|+||+||||++.+ .++.||||+++.... ...++|.+|
T Consensus 21 ~ei~~~~~~~--~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E 79 (308)
T 4gt4_A 21 KEISLSAVRF--MEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHE 79 (308)
T ss_dssp CBCCGGGEEE--EEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHH
T ss_pred ccCCHHHCeE--eeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHH
Confidence 3443333344 4569999999999999831 237999999975433 223557655
No 163
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=97.80 E-value=4.9e-06 Score=82.19 Aligned_cols=47 Identities=23% Similarity=0.408 Sum_probs=33.2
Q ss_pred cccccceeccCCCceEEEEEECC-----CCeEEEEEEeeccCCCcccCcccC
Q 038612 632 EFSTSNMIGQGSFGIVYKGIFSE-----NGMVVAVKVINLNQKGGFRSFVAE 678 (678)
Q Consensus 632 ~f~~~~~iG~G~~G~Vykg~l~~-----~g~~vAvK~l~~~~~~~~~~F~~E 678 (678)
+|.-.+.||+|+||+||+|++.+ .|+.||||+++..+.+..++|.+|
T Consensus 14 ~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E 65 (299)
T 4asz_A 14 NIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHRE 65 (299)
T ss_dssp GEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHH
T ss_pred HeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHH
Confidence 45556789999999999999842 248999999976555445567655
No 164
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=97.64 E-value=2.1e-05 Score=79.01 Aligned_cols=52 Identities=29% Similarity=0.370 Sum_probs=41.9
Q ss_pred ceeeHHHHHHhhhc----------ccccceeccCCCceEEEEEECCCCeEEEEEEeeccCCC
Q 038612 619 PFVSYAALRKATNE----------FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQKG 670 (678)
Q Consensus 619 ~~~s~~el~~at~~----------f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~~~~ 670 (678)
..++++++++|++. |...+.||+|+||.||+|+....|+.||||++.....+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~ 84 (321)
T 2c30_A 23 GVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQ 84 (321)
T ss_dssp --CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCC
T ss_pred CcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchh
Confidence 56899999999875 55667899999999999998755699999999754433
No 165
>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*
Probab=97.53 E-value=8.6e-05 Score=73.93 Aligned_cols=48 Identities=40% Similarity=0.715 Sum_probs=43.0
Q ss_pred CCceeeHHHHHHhhhccccc------ceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 617 KFPFVSYAALRKATNEFSTS------NMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 617 ~~~~~s~~el~~at~~f~~~------~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
....|++.++.++|++|++. +.||+|+||.||+|... |+.||||++..
T Consensus 11 ~~~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~~--~~~vavK~~~~ 64 (307)
T 2nru_A 11 RFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVN--NTTVAVKKLAA 64 (307)
T ss_dssp CCEECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEESS--SCEEEEEEECC
T ss_pred CCCcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEEC--CceEEEEEEec
Confidence 45679999999999999998 89999999999999973 48999999964
No 166
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=97.44 E-value=7.2e-05 Score=75.00 Aligned_cols=47 Identities=30% Similarity=0.375 Sum_probs=34.9
Q ss_pred cccccceeccCCCceEEEEEECCCCeEEEEEEeeccCCCcccCcccC
Q 038612 632 EFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQKGGFRSFVAE 678 (678)
Q Consensus 632 ~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~~~~~~~~F~~E 678 (678)
.|..-+.||+|+||+||+|+-...|+.||||+++.......+.|.+|
T Consensus 75 ~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~E 121 (346)
T 4fih_A 75 YLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNE 121 (346)
T ss_dssp TEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHH
T ss_pred hcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHH
Confidence 35556789999999999999866679999999975433333445443
No 167
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*
Probab=97.42 E-value=1.7e-05 Score=79.68 Aligned_cols=50 Identities=38% Similarity=0.594 Sum_probs=40.7
Q ss_pred eeeHHHHHHhhhcccccceeccCCCceEEEEEECCCCeEEEEEEeeccCCC
Q 038612 620 FVSYAALRKATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQKG 670 (678)
Q Consensus 620 ~~s~~el~~at~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~~~~ 670 (678)
.+++.++..++++|...+.||+|+||.||+|+..+ |+.||||++......
T Consensus 28 ~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~-~~~vavK~~~~~~~~ 77 (321)
T 2qkw_B 28 RVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRD-GAKVALKRRTPESSQ 77 (321)
T ss_dssp --CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECTT-CCEEEEEECCSCCSS
T ss_pred eecHHHHHHHHhccCccceeecCCCeeEEEEEECC-CCEEEEEEecccChH
Confidence 45666777889999999999999999999999865 499999998654433
No 168
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*
Probab=97.41 E-value=4.7e-05 Score=76.60 Aligned_cols=50 Identities=38% Similarity=0.680 Sum_probs=44.2
Q ss_pred CCceeeHHHHHHhhhcccccceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 617 KFPFVSYAALRKATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 617 ~~~~~s~~el~~at~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
....++++++..++++|...+.||+|+||.||+|...+ |+.||||++...
T Consensus 16 ~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~~ 65 (326)
T 3uim_A 16 QLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLAD-GTLVAVKRLKEE 65 (326)
T ss_dssp CCEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSS-SCCEEEEECCC-
T ss_pred ccceecHHHHHHHhhccccceeEecCCCcEEEEEEecC-CCEEEEEEeccc
Confidence 45678999999999999999999999999999999865 499999999654
No 169
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=97.27 E-value=0.00014 Score=74.87 Aligned_cols=48 Identities=29% Similarity=0.373 Sum_probs=35.8
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeeccCCCcccCcccC
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQKGGFRSFVAE 678 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~~~~~~~~F~~E 678 (678)
+.|...+.||+|+||.||+|+-...|+.||||++........+.|.+|
T Consensus 151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~E 198 (423)
T 4fie_A 151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNE 198 (423)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHH
T ss_pred HhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHH
Confidence 346667889999999999999866679999999975443333334443
No 170
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Probab=97.17 E-value=8.7e-05 Score=77.69 Aligned_cols=46 Identities=26% Similarity=0.413 Sum_probs=40.5
Q ss_pred eeHHHHHHhhhcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 621 VSYAALRKATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 621 ~s~~el~~at~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
+.++++..++++|...+.||+|+||+||+|....+|+.||||+++.
T Consensus 64 ~~~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~ 109 (437)
T 4aw2_A 64 SKVKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNK 109 (437)
T ss_dssp HHHHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEH
T ss_pred chhhcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEH
Confidence 4566777788999999999999999999999987779999999964
No 171
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=97.16 E-value=6.6e-05 Score=74.17 Aligned_cols=43 Identities=42% Similarity=0.636 Sum_probs=30.3
Q ss_pred ccccceeccCCCceEEEEEECCCCeEEEEEEeeccC--CCcccCcccC
Q 038612 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQ--KGGFRSFVAE 678 (678)
Q Consensus 633 f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~~--~~~~~~F~~E 678 (678)
+.-.+.||+|+||+||||++. ..||||+++... .+..++|.+|
T Consensus 38 l~l~~~iG~G~fG~Vy~~~~~---~~vAvK~~~~~~~~~~~~~~f~~E 82 (307)
T 3omv_A 38 VMLSTRIGSGSFGTVYKGKWH---GDVAVKILKVVDPTPEQFQAFRNE 82 (307)
T ss_dssp CCEEEECCCCSSSEEEEEESS---SEEEEEECCCSSCCHHHHHHHHHH
T ss_pred eEEeeEEeeCCCcEEEEEEEC---CcEEEEEEEecCCCHHHHHHHHHH
Confidence 444678999999999999985 249999996432 2223446544
No 172
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=97.11 E-value=0.00015 Score=70.90 Aligned_cols=31 Identities=39% Similarity=0.468 Sum_probs=27.3
Q ss_pred cceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 636 SNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 636 ~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
.+.||+|+||+||+|+....|+.||||++..
T Consensus 31 ~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~ 61 (290)
T 3fpq_A 31 DIEIGRGSFKTVYKGLDTETTVEVAWCELQD 61 (290)
T ss_dssp EEEEEECSSEEEEEEEETTTCCEEEEEEEEG
T ss_pred eeEEecCcCcEEEEEEECCCCeEEEEEEEch
Confidence 4579999999999999876679999999964
No 173
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=97.04 E-value=0.00015 Score=73.23 Aligned_cols=50 Identities=22% Similarity=0.327 Sum_probs=34.8
Q ss_pred hhhcccccceeccCCCceEEEEEECCC-----CeEEEEEEeeccCCCc-ccCcccC
Q 038612 629 ATNEFSTSNMIGQGSFGIVYKGIFSEN-----GMVVAVKVINLNQKGG-FRSFVAE 678 (678)
Q Consensus 629 at~~f~~~~~iG~G~~G~Vykg~l~~~-----g~~vAvK~l~~~~~~~-~~~F~~E 678 (678)
..++|.-.+.||+|+||+||+|++... ++.||||+++...... .++|.+|
T Consensus 62 ~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E 117 (353)
T 4ase_A 62 PRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSE 117 (353)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHH
T ss_pred cHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHH
Confidence 345666678999999999999997432 2589999997643322 3345443
No 174
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}
Probab=97.00 E-value=0.00019 Score=71.66 Aligned_cols=36 Identities=33% Similarity=0.455 Sum_probs=31.8
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
++|...+.||+|+||+||+|....+|+.||||++..
T Consensus 57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~ 92 (311)
T 3p1a_A 57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMS 92 (311)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESS
T ss_pred hheeeeheeccCCCeEEEEEEECCCCeEEEEEEecc
Confidence 568888999999999999999976669999999854
No 175
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=97.00 E-value=0.0002 Score=71.86 Aligned_cols=37 Identities=30% Similarity=0.456 Sum_probs=24.8
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
++|.-.+.||+|+||+||+|+-...|+.||||+++..
T Consensus 24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~ 60 (350)
T 4b9d_A 24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINIS 60 (350)
T ss_dssp CCEEEEEEC------CEEEEEETTTCCEEEEEEEECT
T ss_pred cceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehH
Confidence 3566678899999999999987655699999999643
No 176
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.96 E-value=0.00027 Score=64.09 Aligned_cols=84 Identities=18% Similarity=0.185 Sum_probs=38.7
Q ss_pred CCCCCCEEECCCC-CCccc----cChhhcCCccCcEEeccCCCCccC----CCccCCCCCCCCEEEccccccccc----C
Q 038612 96 SWSKLEKLSIAVN-HLRGQ----LPASIGNLSALQAFDVGENTLHGR----IPESLGQLRSLKFLNVEENNFSGM----V 162 (678)
Q Consensus 96 ~l~~L~~L~Ls~n-~~~~~----~~~~l~~l~~L~~L~ls~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~----~ 162 (678)
.-+.|+.|+|++| .+... +..++..-+.|+.|+|++|.+... +.+.+..-+.|++|+|++|.|... +
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3445666666653 44321 233344445555555555555422 112223344555555555555422 2
Q ss_pred cccccCCCCCcEEECCC
Q 038612 163 PVSIYNISSLEMIFLPA 179 (678)
Q Consensus 163 ~~~~~~l~~L~~L~l~~ 179 (678)
-..+..-+.|++|+|++
T Consensus 119 a~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHTTTTCCCSEEECCC
T ss_pred HHHHhhCCceeEEECCC
Confidence 22333344455555543
No 177
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=96.84 E-value=0.00034 Score=67.85 Aligned_cols=36 Identities=33% Similarity=0.564 Sum_probs=27.1
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
++|.-.+.||+|+||+||+|+-...|+.||||+++.
T Consensus 13 g~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~ 48 (275)
T 3hyh_A 13 GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINK 48 (275)
T ss_dssp -CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEEC
T ss_pred eCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeH
Confidence 456677899999999999998755569999999964
No 178
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=96.83 E-value=0.00063 Score=67.91 Aligned_cols=37 Identities=30% Similarity=0.413 Sum_probs=31.3
Q ss_pred hhcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 630 TNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 630 t~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
.+.|...+.||+|+||.||+|+-...|+.||||+++.
T Consensus 57 ~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~ 93 (336)
T 4g3f_A 57 VHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRL 93 (336)
T ss_dssp TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEET
T ss_pred hhheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECH
Confidence 3456677889999999999999866679999999964
No 179
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.80 E-value=0.0017 Score=54.84 Aligned_cols=59 Identities=22% Similarity=0.289 Sum_probs=39.3
Q ss_pred EEECcCCccc-cccCccccCCCCCCEEECCCCcccccCCccCCCCCCCCEEeCCcCcceeeC
Q 038612 471 YLYMQGNSFG-GRIPLSLISLKSLKVLDLSRNNLSGKIPEYLENLPFLQYLDLSYNHFEGQV 531 (678)
Q Consensus 471 ~L~L~~n~l~-~~~~~~~~~l~~L~~L~ls~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~ 531 (678)
.++.+++.++ ..+|..+. ++|+.|+|++|+|+...+..|..+++|+.|+|++|++.+..
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC 71 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDC 71 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSG
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccC
Confidence 5566666654 23443332 46778888888887666667777888888888888776544
No 180
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=96.76 E-value=0.0004 Score=72.27 Aligned_cols=41 Identities=17% Similarity=0.159 Sum_probs=33.6
Q ss_pred HHHhhhcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 626 LRKATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 626 l~~at~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
+...+..|...++||+|+||.||+|+....|+.||||+++.
T Consensus 73 ~~~~~~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~ 113 (413)
T 3dzo_A 73 LGERPRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYF 113 (413)
T ss_dssp SSSCCEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECC
T ss_pred CCCCceeEEEecccccCCCEEEEEEEecCCCCceEEEEEec
Confidence 33445667788999999999999999765669999999973
No 181
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=96.62 E-value=0.0011 Score=65.34 Aligned_cols=35 Identities=34% Similarity=0.509 Sum_probs=28.3
Q ss_pred cccccceeccCCCceEEEEEE---CCCCeEEEEEEeec
Q 038612 632 EFSTSNMIGQGSFGIVYKGIF---SENGMVVAVKVINL 666 (678)
Q Consensus 632 ~f~~~~~iG~G~~G~Vykg~l---~~~g~~vAvK~l~~ 666 (678)
+|.-.+.||+|+||+||+|+- .+.|+.||||+++.
T Consensus 25 ~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~ 62 (304)
T 3ubd_A 25 QFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKK 62 (304)
T ss_dssp GEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEES
T ss_pred ccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEeh
Confidence 466778999999999999975 22348999999964
No 182
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Probab=96.57 E-value=0.0005 Score=68.95 Aligned_cols=47 Identities=26% Similarity=0.411 Sum_probs=27.1
Q ss_pred eeHHHHHHhhhccc---------ccceeccCCCceEEEEEECCC---CeEEEEEEeecc
Q 038612 621 VSYAALRKATNEFS---------TSNMIGQGSFGIVYKGIFSEN---GMVVAVKVINLN 667 (678)
Q Consensus 621 ~s~~el~~at~~f~---------~~~~iG~G~~G~Vykg~l~~~---g~~vAvK~l~~~ 667 (678)
.++.+...++..|. -.+.||+|+||.||+|..... +..||||+++..
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~ 88 (325)
T 3kul_A 30 HTYEEPGRAGRSFTREIEASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAG 88 (325)
T ss_dssp -------------CCBCCGGGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTT
T ss_pred ccccCccccchhhccccChhHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCC
Confidence 45556555555444 358899999999999998432 257999999754
No 183
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.57 E-value=0.0012 Score=59.89 Aligned_cols=108 Identities=16% Similarity=0.174 Sum_probs=79.5
Q ss_pred CCcEEEEEcCCC-CCCCc------ccCCCCCCCCEEECCCCCCccc----cChhhcCCccCcEEeccCCCCccC----CC
Q 038612 75 HQRVTELYLRNQ-SLGAD------IGYSSWSKLEKLSIAVNHLRGQ----LPASIGNLSALQAFDVGENTLHGR----IP 139 (678)
Q Consensus 75 ~~~v~~l~l~~~-~l~~~------~~~~~l~~L~~L~Ls~n~~~~~----~~~~l~~l~~L~~L~ls~n~l~~~----~p 139 (678)
...++.|+|+++ .+... ..+..-+.|+.|+|++|.+.+. +...+..-+.|++|+|++|.|... +.
T Consensus 40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala 119 (197)
T 1pgv_A 40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 119 (197)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence 467889999985 77653 3456678999999999999754 334455678999999999999742 33
Q ss_pred ccCCCCCCCCEEEccccc---ccc----cCcccccCCCCCcEEECCCCCC
Q 038612 140 ESLGQLRSLKFLNVEENN---FSG----MVPVSIYNISSLEMIFLPANRL 182 (678)
Q Consensus 140 ~~~~~l~~L~~L~L~~n~---l~~----~~~~~~~~l~~L~~L~l~~n~~ 182 (678)
+.+..-+.|++|+|++|. +.. .+...+..-++|+.|+++.|.+
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 457777889999998753 332 1334566678888888887654
No 184
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Probab=96.53 E-value=0.0012 Score=65.03 Aligned_cols=36 Identities=31% Similarity=0.497 Sum_probs=29.9
Q ss_pred ccccceeccCCCceEEEEEECCCCeEEEEEEeeccC
Q 038612 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQ 668 (678)
Q Consensus 633 f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~~ 668 (678)
+....+||+|+||.||+|....+|+.||||++....
T Consensus 24 ~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~ 59 (295)
T 2clq_A 24 NGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERD 59 (295)
T ss_dssp TSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCC
T ss_pred CCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCc
Confidence 455679999999999999986666999999997543
No 185
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}
Probab=96.52 E-value=0.0013 Score=68.25 Aligned_cols=46 Identities=28% Similarity=0.461 Sum_probs=39.8
Q ss_pred eeHHHHHHhhhcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 621 VSYAALRKATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 621 ~s~~el~~at~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
+.+++....+++|...+.||+|+||.||++.....|+.||||+++.
T Consensus 51 ~~~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k 96 (412)
T 2vd5_A 51 VRLKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNK 96 (412)
T ss_dssp HHHHHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEH
T ss_pred hhhhhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeH
Confidence 4566777778899999999999999999999976679999999964
No 186
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=96.49 E-value=0.0016 Score=64.19 Aligned_cols=36 Identities=22% Similarity=0.379 Sum_probs=30.8
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
++|.-.+.||+|+||+||+|+-...|+.||||.++.
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k 67 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEK 67 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEH
T ss_pred cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEH
Confidence 357778899999999999998766679999999963
No 187
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=96.44 E-value=0.0017 Score=66.69 Aligned_cols=35 Identities=31% Similarity=0.469 Sum_probs=29.8
Q ss_pred cccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 632 EFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 632 ~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
.|.-.+.||+|+||.||+|+-...|+.||||+++.
T Consensus 55 ~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~ 89 (398)
T 4b99_A 55 EYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPN 89 (398)
T ss_dssp SEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETT
T ss_pred CeEEEEEEecccCeEEEEEEECCCCCEEEEEEECc
Confidence 46667899999999999998765669999999954
No 188
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}
Probab=96.40 E-value=0.0023 Score=64.87 Aligned_cols=38 Identities=24% Similarity=0.364 Sum_probs=32.0
Q ss_pred hhcccccceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 630 TNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 630 t~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
.+.|...+.||+|+||.||+|+....|+.||||+++..
T Consensus 52 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~ 89 (349)
T 2w4o_A 52 SDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKT 89 (349)
T ss_dssp GGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC-
T ss_pred cCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccc
Confidence 45677788999999999999999766789999999753
No 189
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.39 E-value=0.006 Score=51.44 Aligned_cols=56 Identities=21% Similarity=0.304 Sum_probs=31.6
Q ss_pred EEeccCCCCc-cCCCccCCCCCCCCEEEcccccccccCcccccCCCCCcEEECCCCCCC
Q 038612 126 AFDVGENTLH-GRIPESLGQLRSLKFLNVEENNFSGMVPVSIYNISSLEMIFLPANRLE 183 (678)
Q Consensus 126 ~L~ls~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 183 (678)
.++.+++.++ ..+|..+. .+|++|+|++|.|+...+..|..+++|++|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5556665554 24444332 34666666666666555555566666666666666543
No 190
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Probab=96.37 E-value=0.0013 Score=67.58 Aligned_cols=37 Identities=30% Similarity=0.548 Sum_probs=31.3
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
++|.-.+.||+|+||.||+|....+|+.||||+++..
T Consensus 114 ~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~ 150 (377)
T 3cbl_A 114 EDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRET 150 (377)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTT
T ss_pred HHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEcccc
Confidence 4566678999999999999999756699999999754
No 191
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*
Probab=96.35 E-value=0.0021 Score=66.60 Aligned_cols=45 Identities=24% Similarity=0.387 Sum_probs=38.5
Q ss_pred eHHHHHHhhhcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 622 SYAALRKATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 622 s~~el~~at~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
.++++....++|...+.||+|+||.||+|+....|+.||||+++.
T Consensus 60 ~~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k 104 (410)
T 3v8s_A 60 KIRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSK 104 (410)
T ss_dssp HHHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEH
T ss_pred HHHhcccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEeh
Confidence 345666677889999999999999999999977779999999964
No 192
>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*
Probab=96.34 E-value=0.0013 Score=66.91 Aligned_cols=45 Identities=31% Similarity=0.456 Sum_probs=39.4
Q ss_pred eeHHHHHHhhhcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 621 VSYAALRKATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 621 ~s~~el~~at~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
...+++...++.|.-.+.||+|+||.||+|+-.+ |+.||||++..
T Consensus 12 ~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~-~~~vavK~~~~ 56 (362)
T 3pg1_A 12 DLIAELHAMQSPYTVQRFISSGSYGAVCAGVDSE-GIPVAIKRVFN 56 (362)
T ss_dssp HHHHHHHHTTCSCEEEEEEEEETTEEEEEEECTT-SCEEEEEEECE
T ss_pred HHHHHHHHhccceEEeEEeccCCCEEEEEEECCC-CCeEEEEeccc
Confidence 3467888889999999999999999999998866 59999999954
No 193
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Probab=96.33 E-value=0.00086 Score=68.67 Aligned_cols=36 Identities=31% Similarity=0.489 Sum_probs=24.8
Q ss_pred ccccceeccCCCceEEEEEECCCCeEEEEEEeeccC
Q 038612 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQ 668 (678)
Q Consensus 633 f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~~ 668 (678)
+...+.||+|+||.||+|+....|+.||||+++...
T Consensus 91 ~~~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~ 126 (373)
T 2x4f_A 91 VSKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRG 126 (373)
T ss_dssp EEEEEECC-----CEEEEEETTTCCEEEEEEEECCS
T ss_pred eecceEEecCcCEEEEEEEEcCCCcEEEEEEEcccc
Confidence 344678999999999999986667999999997543
No 194
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Probab=96.32 E-value=0.0016 Score=68.68 Aligned_cols=38 Identities=24% Similarity=0.477 Sum_probs=31.9
Q ss_pred hhcccccceeccCCCceEEEEEECCCCeEEEEEEeeccC
Q 038612 630 TNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQ 668 (678)
Q Consensus 630 t~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~~ 668 (678)
.++|.-.+.||+|+||.||+|...++ +.||||+++...
T Consensus 187 ~~~~~~~~~lG~G~fg~V~~~~~~~~-~~vavK~~~~~~ 224 (454)
T 1qcf_A 187 RESLKLEKKLGAGQFGEVWMATYNKH-TKVAVKTMKPGS 224 (454)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEETTT-EEEEEEEECTTS
T ss_pred hHHeEEEEEcccCCceEEEEEEECCc-cEEEEEEecCCC
Confidence 45677788999999999999999754 899999997543
No 195
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A
Probab=96.30 E-value=0.00096 Score=68.49 Aligned_cols=37 Identities=16% Similarity=0.144 Sum_probs=30.6
Q ss_pred hhcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 630 TNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 630 t~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
.++|...+.||+|+||.||+|+....|+.||||++..
T Consensus 72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~ 108 (377)
T 3byv_A 72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYF 108 (377)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEE
T ss_pred CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEee
Confidence 4567778899999999999999755569999999964
No 196
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Probab=96.24 E-value=0.0016 Score=64.30 Aligned_cols=37 Identities=32% Similarity=0.572 Sum_probs=30.8
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
+.|...+.||+|+||.||+|.-...|+.||||++...
T Consensus 20 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~ 56 (297)
T 3fxz_A 20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQ 56 (297)
T ss_dssp GTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGG
T ss_pred hceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecc
Confidence 3567778999999999999986555699999999644
No 197
>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*
Probab=96.24 E-value=0.0018 Score=63.46 Aligned_cols=37 Identities=41% Similarity=0.645 Sum_probs=31.3
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
++|.-.+.||+|+||.||+|+...+|+.||||++...
T Consensus 19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~ 55 (287)
T 4f0f_A 19 NEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILG 55 (287)
T ss_dssp TTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCC
T ss_pred ccceehhccccCCceeEEEEEEcCCceEEEEEEeecc
Confidence 4566778999999999999999666799999999643
No 198
>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*
Probab=96.22 E-value=0.0027 Score=64.34 Aligned_cols=43 Identities=26% Similarity=0.369 Sum_probs=32.5
Q ss_pred HHHHHhhhcccccceeccCCCceEEEEEEC---CCCeEEEEEEeec
Q 038612 624 AALRKATNEFSTSNMIGQGSFGIVYKGIFS---ENGMVVAVKVINL 666 (678)
Q Consensus 624 ~el~~at~~f~~~~~iG~G~~G~Vykg~l~---~~g~~vAvK~l~~ 666 (678)
+++.+..+.|.-.+.||+|+||+||+|+-. ..++.||||++..
T Consensus 14 ~~~p~l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~ 59 (361)
T 4f9c_A 14 EAVPQLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIP 59 (361)
T ss_dssp HHSGGGGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECT
T ss_pred HhcCCccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEcc
Confidence 344445567888899999999999999742 1248999999954
No 199
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Probab=96.12 E-value=0.0033 Score=65.48 Aligned_cols=36 Identities=33% Similarity=0.757 Sum_probs=30.6
Q ss_pred cccccceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 632 EFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 632 ~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
.|...+.||+|+||.||+|+....|+.||||++...
T Consensus 55 ~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~ 90 (420)
T 1j1b_A 55 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQD 90 (420)
T ss_dssp EEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC
T ss_pred eEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEeccc
Confidence 356678999999999999999766699999999653
No 200
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}
Probab=96.12 E-value=0.0034 Score=63.83 Aligned_cols=44 Identities=36% Similarity=0.539 Sum_probs=27.0
Q ss_pred HHHHHhhhcccccceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 624 AALRKATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 624 ~el~~at~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
.+.....++|.-.+.||+|+||.||+|+....|+.||||++...
T Consensus 16 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~ 59 (360)
T 3e3p_A 16 ERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQD 59 (360)
T ss_dssp HHHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECC
T ss_pred hhchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecC
Confidence 44556677899999999999999999998666699999999643
No 201
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Probab=96.08 E-value=0.00093 Score=68.43 Aligned_cols=37 Identities=27% Similarity=0.577 Sum_probs=29.2
Q ss_pred hcccccceeccCCCceEEEEEEC---CCCeEEEEEEeecc
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFS---ENGMVVAVKVINLN 667 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~---~~g~~vAvK~l~~~ 667 (678)
++|...+.||+|+||.||+|+.. ..+..||||+++..
T Consensus 45 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~ 84 (373)
T 2qol_A 45 TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVG 84 (373)
T ss_dssp GGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTT
T ss_pred hhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCc
Confidence 35677899999999999999875 23478999999754
No 202
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Probab=96.07 E-value=0.0017 Score=69.25 Aligned_cols=38 Identities=26% Similarity=0.644 Sum_probs=31.8
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeeccC
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQ 668 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~~ 668 (678)
.+|...+.||+|+||.||+|+....++.||||+++...
T Consensus 220 ~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~ 257 (495)
T 1opk_A 220 TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT 257 (495)
T ss_dssp GGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSS
T ss_pred HHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCcc
Confidence 34666789999999999999997656999999997543
No 203
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Probab=96.06 E-value=0.0024 Score=63.00 Aligned_cols=38 Identities=34% Similarity=0.566 Sum_probs=30.3
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeeccC
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQ 668 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~~ 668 (678)
+.|.-.+.||+|+||.||+|+....|+.||||.+....
T Consensus 19 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~ 56 (302)
T 2j7t_A 19 EVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKS 56 (302)
T ss_dssp GTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC---
T ss_pred cceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCC
Confidence 34666788999999999999997667999999996543
No 204
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=96.05 E-value=0.0038 Score=67.80 Aligned_cols=36 Identities=36% Similarity=0.656 Sum_probs=32.0
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
++|.-.++||+|+||.||+|.-...|+.||||+++.
T Consensus 189 ddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K 224 (689)
T 3v5w_A 189 NDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDK 224 (689)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEH
T ss_pred HHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeH
Confidence 568888999999999999999877779999999953
No 205
>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}
Probab=96.03 E-value=0.0047 Score=60.84 Aligned_cols=37 Identities=27% Similarity=0.511 Sum_probs=29.3
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
++|.-.+.||+|+||.||+|+-...|+.||||++...
T Consensus 13 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~ 49 (298)
T 2zv2_A 13 NQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKK 49 (298)
T ss_dssp TTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC
T ss_pred cceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehh
Confidence 4566778999999999999998666799999999643
No 206
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Probab=96.03 E-value=0.0047 Score=63.07 Aligned_cols=37 Identities=32% Similarity=0.502 Sum_probs=32.1
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
++|.-.+.||+|+||.||+|.....|+.||||+++..
T Consensus 38 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~ 74 (373)
T 2r5t_A 38 SDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKK 74 (373)
T ss_dssp GGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGG
T ss_pred hheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHH
Confidence 4577789999999999999999777799999999643
No 207
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*
Probab=96.02 E-value=0.0014 Score=66.61 Aligned_cols=47 Identities=19% Similarity=0.246 Sum_probs=36.3
Q ss_pred eeHHHHHHhhhcccccceeccCCCceEEEEEEC-----CCCeEEEEEEeecc
Q 038612 621 VSYAALRKATNEFSTSNMIGQGSFGIVYKGIFS-----ENGMVVAVKVINLN 667 (678)
Q Consensus 621 ~s~~el~~at~~f~~~~~iG~G~~G~Vykg~l~-----~~g~~vAvK~l~~~ 667 (678)
+...+.+...++|.-.+.||+|+||.||+|... ..|+.||||+++..
T Consensus 12 ~~~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~ 63 (359)
T 3vhe_A 12 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEG 63 (359)
T ss_dssp CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTT
T ss_pred CCcccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCc
Confidence 344555556778888999999999999999852 23379999999653
No 208
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...
Probab=96.01 E-value=0.0055 Score=61.10 Aligned_cols=38 Identities=29% Similarity=0.651 Sum_probs=32.0
Q ss_pred hhcccccceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 630 TNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 630 t~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
.+.|.-.+.||+|+||.||+|+...+|+.||||+++..
T Consensus 42 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~ 79 (320)
T 3a99_A 42 ESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKD 79 (320)
T ss_dssp TTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGG
T ss_pred cCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecc
Confidence 44577788999999999999987666799999999654
No 209
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Probab=96.01 E-value=0.0026 Score=64.39 Aligned_cols=37 Identities=41% Similarity=0.523 Sum_probs=31.1
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
+.|...+.||+|+||.||+|+-..+|+.||||++...
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~ 90 (348)
T 1u5q_A 54 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYS 90 (348)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESC
T ss_pred hheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccc
Confidence 4477778999999999999997555699999999653
No 210
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}
Probab=96.00 E-value=0.0018 Score=65.11 Aligned_cols=37 Identities=22% Similarity=0.324 Sum_probs=31.1
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
.+|.-.+.||+|+||.||+|.....|+.||||++...
T Consensus 28 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~ 64 (337)
T 3ll6_A 28 LRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSN 64 (337)
T ss_dssp EEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEES
T ss_pred ceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCC
Confidence 3577788999999999999998656699999999543
No 211
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A
Probab=95.97 E-value=0.0027 Score=66.78 Aligned_cols=35 Identities=40% Similarity=0.570 Sum_probs=29.9
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
++|.-.+.||+|+||.||+|.+. |+.||||+++..
T Consensus 193 ~~~~~~~~lG~G~fg~V~~~~~~--~~~vavK~~~~~ 227 (450)
T 1k9a_A 193 KELKLLQTIGKGEFGDVMLGDYR--GNKVAVKCIKND 227 (450)
T ss_dssp GGEEEEEEEEECSSEEEEEEEET--TEEEEEEEESSC
T ss_pred HHeEEEeeecCcCCeeEEEEEec--CCeEEEEEeCCc
Confidence 45666789999999999999995 489999999754
No 212
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A
Probab=95.96 E-value=0.003 Score=61.92 Aligned_cols=36 Identities=8% Similarity=0.026 Sum_probs=30.7
Q ss_pred cccccceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 632 EFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 632 ~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
.|.-.+.||+|+||.||+|+....|+.||||.+...
T Consensus 32 ~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~ 67 (286)
T 3uqc_A 32 RYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQ 67 (286)
T ss_dssp TEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTT
T ss_pred cEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcc
Confidence 466678899999999999998765699999999654
No 213
>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A
Probab=95.96 E-value=0.0027 Score=63.17 Aligned_cols=33 Identities=24% Similarity=0.295 Sum_probs=27.3
Q ss_pred cceeccCCCceEEEEEECCCCeEEEEEEeeccC
Q 038612 636 SNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQ 668 (678)
Q Consensus 636 ~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~~ 668 (678)
.+.||+|+||.||+|.-...|+.||||+++...
T Consensus 18 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~ 50 (316)
T 2ac3_A 18 EDVLGEGAHARVQTCINLITSQEYAVKIIEKQP 50 (316)
T ss_dssp CCCCCCCSSEEEEEEECSSSCCEEEEEEEECCS
T ss_pred CceecCCceEEEEEEEEcCCCcEEEEEEEeeCc
Confidence 357999999999999865556999999996543
No 214
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=95.95 E-value=0.0029 Score=66.65 Aligned_cols=37 Identities=27% Similarity=0.500 Sum_probs=31.0
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeeccC
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQ 668 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~~ 668 (678)
++|.-.+.||+|+||.||+|...++ ..||||+++...
T Consensus 184 ~~~~~~~~lG~G~fg~Vy~~~~~~~-~~vavK~~~~~~ 220 (452)
T 1fmk_A 184 ESLRLEVKLGQGCFGEVWMGTWNGT-TRVAIKTLKPGT 220 (452)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTT-EEEEEEECCTTS
T ss_pred hHceeeeeecCCCCeEEEEEEECCC-ceEEEEEeccCC
Confidence 4566678899999999999999754 889999997543
No 215
>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*
Probab=95.95 E-value=0.005 Score=62.09 Aligned_cols=38 Identities=29% Similarity=0.575 Sum_probs=32.8
Q ss_pred hhhcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 629 ATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 629 at~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
..++|.-.+.||+|+||.||+|+....|+.||||+++.
T Consensus 15 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~ 52 (345)
T 1xjd_A 15 KIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKK 52 (345)
T ss_dssp -CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEH
T ss_pred ChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEh
Confidence 34678888999999999999999976679999999964
No 216
>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}
Probab=95.94 E-value=0.0022 Score=64.79 Aligned_cols=41 Identities=29% Similarity=0.514 Sum_probs=34.8
Q ss_pred HHHhhhcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 626 LRKATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 626 l~~at~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
+....+.|.-.+.||+|+||.||+|+....++.||||++..
T Consensus 21 ~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~ 61 (345)
T 3hko_A 21 LLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNK 61 (345)
T ss_dssp HHHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEH
T ss_pred hhhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhh
Confidence 44556778889999999999999999876678999999964
No 217
>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A
Probab=95.93 E-value=0.0026 Score=64.05 Aligned_cols=35 Identities=31% Similarity=0.616 Sum_probs=29.6
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
++|...+.||+|+||.||+|+. . |+.||||++...
T Consensus 20 ~~y~~~~~lG~G~~g~V~~~~~-~-~~~vAvK~~~~~ 54 (336)
T 2vuw_A 20 EKLQRCEKIGEGVFGEVFQTIA-D-HTPVAIKIIAIE 54 (336)
T ss_dssp HHHHTCEEEEEETTEEEEEEEE-T-TEEEEEEEEEES
T ss_pred ccchheeeecccCceEEEEEEe-C-CceEEEEEEecC
Confidence 4566778999999999999998 4 499999999653
No 218
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Probab=95.93 E-value=0.0023 Score=65.12 Aligned_cols=48 Identities=27% Similarity=0.279 Sum_probs=39.8
Q ss_pred ceeeHHHHHHhhhcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 619 PFVSYAALRKATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 619 ~~~s~~el~~at~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
..+++++-....++|.-.+.||+|+||.||+|+....|+.||||+++.
T Consensus 23 ~~~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~ 70 (360)
T 3llt_A 23 VHFSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRN 70 (360)
T ss_dssp GSCCCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECS
T ss_pred eeeeeecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEecc
Confidence 445666666667789889999999999999999866679999999963
No 219
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Probab=95.92 E-value=0.0032 Score=64.66 Aligned_cols=40 Identities=33% Similarity=0.455 Sum_probs=34.0
Q ss_pred HHhhhcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 627 RKATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 627 ~~at~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
...+++|...+.||+|+||.||+|.-...|+.||||+++.
T Consensus 50 ~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~ 89 (382)
T 2vx3_A 50 EKWMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKN 89 (382)
T ss_dssp CEETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECS
T ss_pred CEeeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEec
Confidence 3446678888999999999999999876679999999964
No 220
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}
Probab=95.91 E-value=0.0019 Score=64.32 Aligned_cols=37 Identities=22% Similarity=0.204 Sum_probs=28.9
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
++|.-.+.||+|+||.||+++-...|+.||||++...
T Consensus 29 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~ 65 (317)
T 2buj_A 29 KHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCH 65 (317)
T ss_dssp EEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEES
T ss_pred eEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecC
Confidence 4577788999999999999997555699999998643
No 221
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=95.88 E-value=0.002 Score=69.79 Aligned_cols=37 Identities=22% Similarity=0.391 Sum_probs=31.3
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
++|.-.+.||+|+||.||+|+-...|+.||||.+...
T Consensus 157 ~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~ 193 (573)
T 3uto_A 157 DHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTP 193 (573)
T ss_dssp GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC
T ss_pred cccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEecc
Confidence 4566678899999999999998766799999999643
No 222
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}
Probab=95.87 E-value=0.0061 Score=62.65 Aligned_cols=37 Identities=22% Similarity=0.419 Sum_probs=32.5
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
++|.-.++||+|+||.||+|+....|+.||||+++..
T Consensus 52 ~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~ 88 (396)
T 4dc2_A 52 QDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKE 88 (396)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGG
T ss_pred hHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhh
Confidence 4677889999999999999999877799999999743
No 223
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=95.86 E-value=0.0047 Score=64.27 Aligned_cols=37 Identities=24% Similarity=0.378 Sum_probs=32.3
Q ss_pred hhcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 630 TNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 630 t~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
.++|.-.+.||+|+||.||+|+....|+.||||.+..
T Consensus 134 ~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~ 170 (419)
T 3i6u_A 134 RDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISK 170 (419)
T ss_dssp HTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEG
T ss_pred hccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEe
Confidence 4567778899999999999999877779999999964
No 224
>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}
Probab=95.85 E-value=0.0043 Score=62.38 Aligned_cols=38 Identities=32% Similarity=0.565 Sum_probs=32.1
Q ss_pred hhcccccceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 630 TNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 630 t~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
.+.|...+.||+|+||.||+|+-...|+.||||+++..
T Consensus 23 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~ 60 (335)
T 3dls_A 23 SQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKE 60 (335)
T ss_dssp HHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEEST
T ss_pred ccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehh
Confidence 44677788999999999999997666799999999754
No 225
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*
Probab=95.85 E-value=0.0031 Score=62.55 Aligned_cols=36 Identities=33% Similarity=0.491 Sum_probs=30.0
Q ss_pred hhcccccceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 630 TNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 630 t~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
.++|.-.+.||+|+||.||+|... |+.||||++...
T Consensus 36 ~~~y~i~~~lG~G~~g~V~~~~~~--~~~vavK~~~~~ 71 (309)
T 3p86_A 36 WCDLNIKEKIGAGSFGTVHRAEWH--GSDVAVKILMEQ 71 (309)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEET--TEEEEEEEECCC
T ss_pred hhHceeeeEeecCCCeEEEEEEEC--CCcEEEEEecCC
Confidence 345777889999999999999984 499999999643
No 226
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Probab=95.82 E-value=0.0026 Score=63.65 Aligned_cols=48 Identities=31% Similarity=0.651 Sum_probs=38.1
Q ss_pred eeeHHHHHHhhhcccccceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 620 FVSYAALRKATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 620 ~~s~~el~~at~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
.+.+.++..+.+.|.-.+.||+|+||.||+|.....|+.||||++...
T Consensus 13 ~~~~~~l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~ 60 (326)
T 2x7f_A 13 EIDLSALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVT 60 (326)
T ss_dssp ---CCCCCCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC
T ss_pred hccchhccCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecC
Confidence 455566666778888899999999999999998656699999999643
No 227
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=95.81 E-value=0.0035 Score=67.51 Aligned_cols=38 Identities=26% Similarity=0.485 Sum_probs=31.4
Q ss_pred hhcccccceeccCCCceEEEEEECCCCeEEEEEEeeccC
Q 038612 630 TNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLNQ 668 (678)
Q Consensus 630 t~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~~ 668 (678)
.++|.-.+.||+|+||.||+|.+.++ ..||||+++...
T Consensus 266 ~~~~~~~~~lG~G~fg~Vy~~~~~~~-~~vavK~~~~~~ 303 (535)
T 2h8h_A 266 RESLRLEVKLGQGCFGEVWMGTWNGT-TRVAIKTLKPGT 303 (535)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTT-EEEEEEEECTTS
T ss_pred hhhhhhheecccCCCeEEEEEEECCC-ceEEEEEeCCCC
Confidence 34566678999999999999999754 889999997543
No 228
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A
Probab=95.78 E-value=0.0035 Score=61.20 Aligned_cols=36 Identities=28% Similarity=0.505 Sum_probs=27.5
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
++|...+.||+|+||.||+|...++ ..||||+++..
T Consensus 24 ~~y~~~~~lg~G~~g~V~~~~~~~~-~~vavK~~~~~ 59 (283)
T 3gen_A 24 KDLTFLKELGTGQFGVVKYGKWRGQ-YDVAIKMIKEG 59 (283)
T ss_dssp GGEEEEEECC---CEEEEEEEETTT-EEEEEEEECTT
T ss_pred HHHHhHhhcCCCCCceEEEEEEcCC-CeEEEEEecCC
Confidence 4566678999999999999999754 89999999754
No 229
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*
Probab=95.77 E-value=0.0062 Score=60.80 Aligned_cols=34 Identities=26% Similarity=0.416 Sum_probs=29.3
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
++|.-.+.||+|+||.||+|+.. |+.||||++..
T Consensus 24 ~~y~~~~~lg~G~~g~Vy~~~~~--~~~vavK~~~~ 57 (322)
T 3soc_A 24 MPLQLLEVKARGRFGCVWKAQLL--NEYVAVKIFPI 57 (322)
T ss_dssp EEEEEEEEEECSTTCEEEEEEET--TEEEEEEEECG
T ss_pred hhchhhheecccCceEEEEEEEC--CCEEEEEEeec
Confidence 45677889999999999999985 49999999964
No 230
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=95.77 E-value=0.0047 Score=64.87 Aligned_cols=37 Identities=30% Similarity=0.456 Sum_probs=32.1
Q ss_pred hhcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 630 TNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 630 t~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
.++|...+.||+|+||.||+|.-...|+.||||+++.
T Consensus 147 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~ 183 (446)
T 4ejn_A 147 MNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKK 183 (446)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEH
T ss_pred hHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEh
Confidence 3568888999999999999999866679999999964
No 231
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Probab=95.76 E-value=0.0036 Score=62.63 Aligned_cols=37 Identities=30% Similarity=0.462 Sum_probs=29.3
Q ss_pred cccccceeccCCCceEEEEEE----CCCCeEEEEEEeeccC
Q 038612 632 EFSTSNMIGQGSFGIVYKGIF----SENGMVVAVKVINLNQ 668 (678)
Q Consensus 632 ~f~~~~~iG~G~~G~Vykg~l----~~~g~~vAvK~l~~~~ 668 (678)
+|.-.+.||+|+||.||+|.+ ...|+.||||++....
T Consensus 42 ~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~ 82 (326)
T 2w1i_A 42 HLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHST 82 (326)
T ss_dssp GEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCC
T ss_pred HceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCC
Confidence 455678899999999999986 2235899999997543
No 232
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Probab=95.76 E-value=0.0041 Score=61.76 Aligned_cols=40 Identities=33% Similarity=0.560 Sum_probs=30.6
Q ss_pred HhhhcccccceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 628 KATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 628 ~at~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
...++|.-.+.||+|+||.||+|....+|+.||||+++..
T Consensus 28 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~ 67 (312)
T 2iwi_A 28 AFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRN 67 (312)
T ss_dssp -----CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCST
T ss_pred hhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecc
Confidence 3345688889999999999999987656699999999643
No 233
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Probab=95.75 E-value=0.0085 Score=60.98 Aligned_cols=41 Identities=20% Similarity=0.460 Sum_probs=34.0
Q ss_pred HHhhhcccccceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 627 RKATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 627 ~~at~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
....++|...+.||+|+||.||+|+....|+.||||.++..
T Consensus 90 ~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~ 130 (365)
T 2y7j_A 90 KEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVT 130 (365)
T ss_dssp HHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETT
T ss_pred hhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEcc
Confidence 34456688889999999999999999655699999999654
No 234
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition state, activation helix, serine/threonine-PR kinase; HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Probab=95.68 E-value=0.0072 Score=60.77 Aligned_cols=38 Identities=26% Similarity=0.469 Sum_probs=31.6
Q ss_pred hhcccccceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 630 TNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 630 t~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
.++|...+.||+|+||.||+|.....|+.||||+++..
T Consensus 50 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~ 87 (340)
T 3an0_A 50 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRAT 87 (340)
T ss_dssp SSCEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC
T ss_pred hhheeEeeEecccCCEEEEEEEEcCCCCEEEEEEeccc
Confidence 45577778899999999999998555699999999653
No 235
>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*
Probab=95.67 E-value=0.0058 Score=61.20 Aligned_cols=40 Identities=30% Similarity=0.547 Sum_probs=32.8
Q ss_pred HhhhcccccceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 628 KATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 628 ~at~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
...++|...+.||+|+||.||+|+-...|+.||||+++..
T Consensus 31 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~ 70 (329)
T 3gbz_A 31 TSIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLE 70 (329)
T ss_dssp -CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCC
T ss_pred cchhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEccc
Confidence 3345688889999999999999987666799999999643
No 236
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}
Probab=95.62 E-value=0.0045 Score=60.55 Aligned_cols=37 Identities=27% Similarity=0.347 Sum_probs=31.7
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
+.|.-.+.||+|+||.||++....+|+.||||++...
T Consensus 22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~ 58 (285)
T 3is5_A 22 DLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKD 58 (285)
T ss_dssp HHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGG
T ss_pred hheeecceeccCCCeEEEEEEEccCCceEEEEEeecc
Confidence 3577788999999999999998766799999999654
No 237
>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*
Probab=95.62 E-value=0.0089 Score=59.71 Aligned_cols=37 Identities=30% Similarity=0.513 Sum_probs=30.5
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
++|...+.||+|+||.||+|+....|+.||||+++..
T Consensus 22 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~ 58 (327)
T 3aln_A 22 EDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRST 58 (327)
T ss_dssp CSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECC
T ss_pred HHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecc
Confidence 4566678899999999999999666699999999653
No 238
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*
Probab=95.61 E-value=0.0031 Score=63.20 Aligned_cols=36 Identities=28% Similarity=0.475 Sum_probs=29.1
Q ss_pred cccccceeccCCCceEEEEEE----CCCCeEEEEEEeecc
Q 038612 632 EFSTSNMIGQGSFGIVYKGIF----SENGMVVAVKVINLN 667 (678)
Q Consensus 632 ~f~~~~~iG~G~~G~Vykg~l----~~~g~~vAvK~l~~~ 667 (678)
+|.-.+.||+|+||.||+|++ ...|+.||||++...
T Consensus 24 ~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~ 63 (327)
T 3lxl_A 24 HLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHS 63 (327)
T ss_dssp GEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSC
T ss_pred hhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccC
Confidence 466678999999999999995 223589999999654
No 239
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}
Probab=95.60 E-value=0.0066 Score=61.42 Aligned_cols=36 Identities=36% Similarity=0.566 Sum_probs=31.8
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
++|.-.+.||+|+||.||+|+....|+.||||+++.
T Consensus 23 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~ 58 (353)
T 3txo_A 23 DNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKK 58 (353)
T ss_dssp CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEH
T ss_pred hheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEH
Confidence 568888999999999999999876679999999964
No 240
>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*
Probab=95.58 E-value=0.0052 Score=62.18 Aligned_cols=37 Identities=32% Similarity=0.577 Sum_probs=31.2
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
+.|...+.||+|+||.||+|+....|+.||||++...
T Consensus 17 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~ 53 (351)
T 3mi9_A 17 SKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLME 53 (351)
T ss_dssp GGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCS
T ss_pred cceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecc
Confidence 4577788999999999999998666699999999543
No 241
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*
Probab=95.56 E-value=0.0078 Score=61.43 Aligned_cols=38 Identities=16% Similarity=0.114 Sum_probs=32.0
Q ss_pred hhcccccceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 630 TNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 630 t~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
...|...+.||+|+||.||+|+....|+.||||++...
T Consensus 61 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~ 98 (371)
T 3q60_A 61 ERKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMG 98 (371)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECC
T ss_pred ceeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEec
Confidence 34467788999999999999998666799999999754
No 242
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...
Probab=95.55 E-value=0.0012 Score=66.04 Aligned_cols=47 Identities=32% Similarity=0.475 Sum_probs=36.4
Q ss_pred eeHHHHHHhhhcccccceeccCCCceEEEEEECC-----CCeEEEEEEeecc
Q 038612 621 VSYAALRKATNEFSTSNMIGQGSFGIVYKGIFSE-----NGMVVAVKVINLN 667 (678)
Q Consensus 621 ~s~~el~~at~~f~~~~~iG~G~~G~Vykg~l~~-----~g~~vAvK~l~~~ 667 (678)
+..++.+.+.++|...+.||+|+||.||+|+..+ .++.||||++...
T Consensus 15 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~ 66 (322)
T 1p4o_A 15 YVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEA 66 (322)
T ss_dssp CCCCTTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTT
T ss_pred cChhhhcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccc
Confidence 4445556667788889999999999999998741 2478999999643
No 243
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*
Probab=95.54 E-value=0.0058 Score=60.30 Aligned_cols=36 Identities=47% Similarity=0.758 Sum_probs=30.6
Q ss_pred cccccceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 632 EFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 632 ~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
.|...+.||+|+||.||+|+-...|+.||||.+...
T Consensus 23 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~ 58 (303)
T 3a7i_A 23 LFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLE 58 (303)
T ss_dssp TEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETT
T ss_pred HHHHhhhhcccCCeEEEEEEECCCCcEEEEEEeccc
Confidence 467778999999999999987666699999999643
No 244
>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...
Probab=95.54 E-value=0.0037 Score=61.22 Aligned_cols=39 Identities=26% Similarity=0.626 Sum_probs=33.0
Q ss_pred hhhcccccceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 629 ATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 629 at~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
..++|...+.||+|+||.||+|+....|+.||||+++..
T Consensus 11 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~ 49 (288)
T 3kfa_A 11 ERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED 49 (288)
T ss_dssp CGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSC
T ss_pred cccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcC
Confidence 345677788999999999999999776799999999654
No 245
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*
Probab=95.52 E-value=0.0078 Score=60.10 Aligned_cols=35 Identities=37% Similarity=0.652 Sum_probs=27.5
Q ss_pred cccccceeccCCCceEEEEEECCCCeE----EEEEEeec
Q 038612 632 EFSTSNMIGQGSFGIVYKGIFSENGMV----VAVKVINL 666 (678)
Q Consensus 632 ~f~~~~~iG~G~~G~Vykg~l~~~g~~----vAvK~l~~ 666 (678)
+|...+.||+|+||.||+|+....|+. ||+|++..
T Consensus 14 ~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~ 52 (325)
T 3kex_A 14 ELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIED 52 (325)
T ss_dssp TEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECC
T ss_pred HceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccc
Confidence 456678999999999999997555453 88888854
No 246
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7
Probab=95.50 E-value=0.0036 Score=64.25 Aligned_cols=37 Identities=27% Similarity=0.492 Sum_probs=31.4
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
+.|.-.+.||+|+||.||+|+....|+.||+|.+...
T Consensus 51 ~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~ 87 (387)
T 1kob_A 51 DYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTP 87 (387)
T ss_dssp GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC
T ss_pred cceEEEEEEecCCCEEEEEEEECCCCCEEEEEEeccc
Confidence 4577778999999999999998766799999999643
No 247
>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A
Probab=95.49 E-value=0.0082 Score=60.44 Aligned_cols=38 Identities=29% Similarity=0.499 Sum_probs=32.3
Q ss_pred hhcccccceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 630 TNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 630 t~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
.++|.-.+.||+|+||.||+++-...|+.||||.++..
T Consensus 21 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~ 58 (342)
T 2qr7_A 21 TDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKS 58 (342)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETT
T ss_pred cccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcc
Confidence 34577788999999999999998766799999999654
No 248
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Probab=95.47 E-value=0.0035 Score=63.91 Aligned_cols=36 Identities=33% Similarity=0.536 Sum_probs=28.8
Q ss_pred hcccccceeccCCCceEEEEEECC-----CCeEEEEEEeec
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSE-----NGMVVAVKVINL 666 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~-----~g~~vAvK~l~~ 666 (678)
++|.-.+.||+|+||.||+|++.. .++.||||+++.
T Consensus 71 ~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~ 111 (367)
T 3l9p_A 71 KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPE 111 (367)
T ss_dssp GGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCS
T ss_pred hHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEeccc
Confidence 356667889999999999999632 236899999964
No 249
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=95.47 E-value=0.0035 Score=63.01 Aligned_cols=46 Identities=33% Similarity=0.562 Sum_probs=26.4
Q ss_pred eHHHHHHhhhcccc---------cceeccCCCceEEEEEECCC----CeEEEEEEeecc
Q 038612 622 SYAALRKATNEFST---------SNMIGQGSFGIVYKGIFSEN----GMVVAVKVINLN 667 (678)
Q Consensus 622 s~~el~~at~~f~~---------~~~iG~G~~G~Vykg~l~~~----g~~vAvK~l~~~ 667 (678)
...+..+++..|.. .+.||+|+||.||+|+.... +..||||+++..
T Consensus 26 ~~~~~~~~~~~~~~~i~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~ 84 (333)
T 1mqb_A 26 MGSDPNQAVLKFTTEIHPSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAG 84 (333)
T ss_dssp ------------CCBCCTTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTT
T ss_pred ccCChhhhhhhccccCChHHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCC
Confidence 34444455555544 58899999999999987432 146999999754
No 250
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}
Probab=95.44 E-value=0.0013 Score=65.69 Aligned_cols=38 Identities=29% Similarity=0.542 Sum_probs=25.7
Q ss_pred hhhcccccceeccCCCceEEEEEECCCCe---EEEEEEeec
Q 038612 629 ATNEFSTSNMIGQGSFGIVYKGIFSENGM---VVAVKVINL 666 (678)
Q Consensus 629 at~~f~~~~~iG~G~~G~Vykg~l~~~g~---~vAvK~l~~ 666 (678)
..++|.-.+.||+|+||.||+|.....+. .||||+++.
T Consensus 21 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~ 61 (323)
T 3qup_A 21 PEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKA 61 (323)
T ss_dssp C---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC--
T ss_pred ChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecc
Confidence 34567778999999999999999854433 799999964
No 251
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*
Probab=95.44 E-value=0.0047 Score=63.58 Aligned_cols=35 Identities=26% Similarity=0.402 Sum_probs=29.9
Q ss_pred cccccceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 632 EFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 632 ~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
.|...+.||+|+||.||+|...+ |+.||||++...
T Consensus 57 ~y~~~~~LG~G~fg~Vy~~~~~~-~~~vaiK~~~~~ 91 (390)
T 2zmd_A 57 IYSILKQIGSGGSSKVFQVLNEK-KQIYAIKYVNLE 91 (390)
T ss_dssp EEEEEEEEECCSSEEEEEEECTT-CCEEEEEEEECT
T ss_pred ceEEEEEEccCCCeEEEEEEcCC-CCEEEEEEEecc
Confidence 47778899999999999999866 599999999643
No 252
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*
Probab=95.40 E-value=0.0052 Score=60.59 Aligned_cols=37 Identities=27% Similarity=0.452 Sum_probs=25.1
Q ss_pred hhcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 630 TNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 630 t~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
.++|.-.+.||+|+||.||+|.....|+.||||++..
T Consensus 14 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~ 50 (303)
T 2vwi_A 14 RDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINL 50 (303)
T ss_dssp CCCCEEEEECC---CCCEEEEEC----CEEEEECCC-
T ss_pred hhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEh
Confidence 3457778899999999999998754568999999864
No 253
>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*
Probab=95.40 E-value=0.0074 Score=58.66 Aligned_cols=35 Identities=40% Similarity=0.570 Sum_probs=29.6
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
++|.-.+.||+|+||.||+|... |+.||||.++..
T Consensus 21 ~~y~~~~~lg~G~~g~V~~~~~~--~~~vavK~~~~~ 55 (278)
T 1byg_A 21 KELKLLQTIGKGEFGDVMLGDYR--GNKVAVKCIKND 55 (278)
T ss_dssp GGEEEEEEEEECSSCEEEEEEET--TEEEEEEECCCC
T ss_pred hhceEEeEEecCCCceEEEEEEc--CCEEEEEEecch
Confidence 45677789999999999999985 499999999643
No 254
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*
Probab=95.38 E-value=0.011 Score=61.67 Aligned_cols=36 Identities=31% Similarity=0.420 Sum_probs=31.0
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
..|...+.||+|+||.||+|.-...|+.||||+++.
T Consensus 97 ~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~ 132 (429)
T 3kvw_A 97 YRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRN 132 (429)
T ss_dssp TTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECS
T ss_pred CcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECC
Confidence 357778899999999999998876679999999964
No 255
>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*
Probab=95.37 E-value=0.0071 Score=61.21 Aligned_cols=37 Identities=27% Similarity=0.397 Sum_probs=32.0
Q ss_pred hhcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 630 TNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 630 t~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
.++|.-.+.||+|+||.||+|.....|+.||||+++.
T Consensus 19 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~ 55 (353)
T 2i0e_A 19 LTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKK 55 (353)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEH
T ss_pred hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEH
Confidence 3568888999999999999999976668999999964
No 256
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=95.33 E-value=0.0033 Score=63.38 Aligned_cols=40 Identities=28% Similarity=0.380 Sum_probs=32.3
Q ss_pred HhhhcccccceeccCCCceEEEEEECC-----CCeEEEEEEeecc
Q 038612 628 KATNEFSTSNMIGQGSFGIVYKGIFSE-----NGMVVAVKVINLN 667 (678)
Q Consensus 628 ~at~~f~~~~~iG~G~~G~Vykg~l~~-----~g~~vAvK~l~~~ 667 (678)
...++|.-.+.||+|+||.||+|...+ .++.||||+++..
T Consensus 44 ~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~ 88 (343)
T 1luf_A 44 YPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEE 88 (343)
T ss_dssp CCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTT
T ss_pred ecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccc
Confidence 345678888999999999999999852 2389999999653
No 257
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...
Probab=95.33 E-value=0.0035 Score=62.82 Aligned_cols=36 Identities=39% Similarity=0.755 Sum_probs=25.8
Q ss_pred hcccccceeccCCCceEEEEEECCCCe----EEEEEEeec
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGM----VVAVKVINL 666 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~----~vAvK~l~~ 666 (678)
++|...+.||+|+||.||+|+....|+ .||||+++.
T Consensus 15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~ 54 (327)
T 3poz_A 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELRE 54 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC--
T ss_pred HHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeeccc
Confidence 357778899999999999999754444 468888854
No 258
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7
Probab=95.32 E-value=0.0089 Score=60.57 Aligned_cols=36 Identities=25% Similarity=0.478 Sum_probs=30.0
Q ss_pred hcccccceeccCCCceEEEEEEC---CCCeEEEEEEeec
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFS---ENGMVVAVKVINL 666 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~---~~g~~vAvK~l~~ 666 (678)
++|...+.||+|+||.||+|... +.|+.||||+++.
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~ 92 (355)
T 1vzo_A 54 ENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKK 92 (355)
T ss_dssp GGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESE
T ss_pred cceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeH
Confidence 46777899999999999999982 2459999999964
No 259
>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...
Probab=95.27 E-value=0.0061 Score=62.06 Aligned_cols=37 Identities=27% Similarity=0.451 Sum_probs=31.4
Q ss_pred hhcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 630 TNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 630 t~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
.+.|...+.||+|+||.||+|.-...|+.||||++..
T Consensus 26 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~ 62 (364)
T 3qyz_A 26 GPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISP 62 (364)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC
T ss_pred cccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEecc
Confidence 3457778899999999999998766679999999964
No 260
>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*
Probab=95.26 E-value=0.011 Score=58.59 Aligned_cols=35 Identities=37% Similarity=0.729 Sum_probs=29.6
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
++|...+.||+|+||.||+|...+ |+.||||+++.
T Consensus 21 ~~y~~~~~lG~G~~g~V~~~~~~~-~~~vavK~~~~ 55 (311)
T 3niz_A 21 EKYQKLEKVGEGTYGVVYKAKDSQ-GRIVALKRIRL 55 (311)
T ss_dssp CEEEEEEEEEECSSCEEEEEEETT-SCEEEEEEEC-
T ss_pred hhhHhhhhccCCCCeEEEEEEECC-CCEEEEEEEec
Confidence 456667899999999999999865 59999999964
No 261
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...
Probab=95.25 E-value=0.0056 Score=62.19 Aligned_cols=37 Identities=32% Similarity=0.608 Sum_probs=31.7
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
++|...+.||+|+||.||+|.....|+.||||+++..
T Consensus 33 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~ 69 (360)
T 3eqc_A 33 DDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLE 69 (360)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECC
T ss_pred ccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccc
Confidence 4577788999999999999999766799999999653
No 262
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Probab=95.23 E-value=0.012 Score=59.01 Aligned_cols=36 Identities=19% Similarity=0.379 Sum_probs=29.5
Q ss_pred hcccc-cceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 631 NEFST-SNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 631 ~~f~~-~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
++|.- .++||+|+||.||+|.....|+.||||++..
T Consensus 28 ~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~ 64 (336)
T 3fhr_A 28 DDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYD 64 (336)
T ss_dssp GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEES
T ss_pred ceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecC
Confidence 34555 4579999999999999876679999999954
No 263
>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}
Probab=95.23 E-value=0.013 Score=59.88 Aligned_cols=36 Identities=31% Similarity=0.407 Sum_probs=31.3
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
++|.-.+.||+|+||.||++.....|+.||||.+..
T Consensus 15 ~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~ 50 (384)
T 4fr4_A 15 DHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNK 50 (384)
T ss_dssp GGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEH
T ss_pred HHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeh
Confidence 347778899999999999999877779999999964
No 264
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Probab=95.20 E-value=0.0087 Score=59.87 Aligned_cols=38 Identities=26% Similarity=0.381 Sum_probs=31.6
Q ss_pred hhcccccceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 630 TNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 630 t~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
.++|.-.+.||+|+||.||+|+-...|+.||||++...
T Consensus 14 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~ 51 (328)
T 3fe3_A 14 IGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKT 51 (328)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGG
T ss_pred cCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhh
Confidence 34677788999999999999997555699999999643
No 265
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Probab=95.16 E-value=0.014 Score=58.90 Aligned_cols=36 Identities=31% Similarity=0.498 Sum_probs=31.2
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
++|...+.||+|+||.||+|+....|+.||||+++.
T Consensus 41 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~ 76 (350)
T 1rdq_E 41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDK 76 (350)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEH
T ss_pred HHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEh
Confidence 457778899999999999999876679999999964
No 266
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=95.14 E-value=0.019 Score=55.98 Aligned_cols=36 Identities=14% Similarity=0.131 Sum_probs=28.7
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
..+.-.+.||+|+||.||+|... +|+.||||.++.+
T Consensus 90 ~~~~~~~~iG~G~~g~Vy~~~~~-~g~~valK~~~~~ 125 (282)
T 1zar_A 90 KVDAIGKLMGEGKESAVFNCYSE-KFGECVVKFHKVG 125 (282)
T ss_dssp SCSEEEEEEEECSSEEEEEEEET-TTEEEEEEEECC-
T ss_pred eEEEecCEeccCCCceEEEEEeC-CCCEEEEEEEECC
Confidence 33444589999999999999994 4599999999643
No 267
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*
Probab=95.12 E-value=0.015 Score=58.12 Aligned_cols=37 Identities=27% Similarity=0.542 Sum_probs=31.3
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
+.|...+.||+|+||.||+|.....|+.||||++...
T Consensus 25 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~ 61 (331)
T 4aaa_A 25 EKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLES 61 (331)
T ss_dssp GGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESC
T ss_pred hhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecC
Confidence 3466678999999999999999776799999999643
No 268
>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*
Probab=95.12 E-value=0.0064 Score=60.28 Aligned_cols=37 Identities=35% Similarity=0.558 Sum_probs=29.8
Q ss_pred hcccccceeccCCCceEEEEEE-----CCCCeEEEEEEeecc
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIF-----SENGMVVAVKVINLN 667 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l-----~~~g~~vAvK~l~~~ 667 (678)
++|.-.+.||+|+||.||+|+. ...++.||||+++..
T Consensus 23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~ 64 (313)
T 1t46_A 23 NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPS 64 (313)
T ss_dssp GGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTT
T ss_pred hhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcc
Confidence 4567778999999999999986 223489999999754
No 269
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Probab=95.12 E-value=0.011 Score=60.19 Aligned_cols=39 Identities=28% Similarity=0.407 Sum_probs=30.8
Q ss_pred hhhcccccceeccCCCceEEEEEECCC-----CeEEEEEEeecc
Q 038612 629 ATNEFSTSNMIGQGSFGIVYKGIFSEN-----GMVVAVKVINLN 667 (678)
Q Consensus 629 at~~f~~~~~iG~G~~G~Vykg~l~~~-----g~~vAvK~l~~~ 667 (678)
.+++|.-.+.||+|+||.||+|....+ ++.||||++...
T Consensus 33 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~ 76 (364)
T 3op5_A 33 AAAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSD 76 (364)
T ss_dssp TCCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETT
T ss_pred CCCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeecc
Confidence 345688889999999999999998653 378999998643
No 270
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=95.11 E-value=0.014 Score=62.48 Aligned_cols=36 Identities=28% Similarity=0.477 Sum_probs=31.5
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
++|...++||+|+||.||+|.....|+.||||++..
T Consensus 185 ~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k 220 (543)
T 3c4z_A 185 DWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNK 220 (543)
T ss_dssp GGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEH
T ss_pred hheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEh
Confidence 567778899999999999999976679999999964
No 271
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A
Probab=95.11 E-value=0.0064 Score=62.06 Aligned_cols=37 Identities=24% Similarity=0.445 Sum_probs=29.2
Q ss_pred hcccccceeccCCCceEEEEEEC-------CCCeEEEEEEeecc
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFS-------ENGMVVAVKVINLN 667 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~-------~~g~~vAvK~l~~~ 667 (678)
++|.-.+.||+|+||.||+|+.. ..+..||||+++..
T Consensus 81 ~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~ 124 (370)
T 2psq_A 81 DKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDD 124 (370)
T ss_dssp GGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTT
T ss_pred HHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCC
Confidence 45667789999999999999862 12368999999654
No 272
>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A
Probab=95.10 E-value=0.017 Score=58.92 Aligned_cols=36 Identities=25% Similarity=0.488 Sum_probs=30.9
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
+.|...+.||+|+||.||+|+-...|+.||||++..
T Consensus 42 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~ 77 (371)
T 4exu_A 42 KTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSR 77 (371)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECS
T ss_pred ccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecc
Confidence 456667889999999999999866679999999964
No 273
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*
Probab=95.09 E-value=0.015 Score=59.82 Aligned_cols=36 Identities=22% Similarity=0.334 Sum_probs=30.9
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
+.|.-.+.||+|+||.||+|+-..+|+.||||+++.
T Consensus 37 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~ 72 (397)
T 1wak_A 37 GRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKS 72 (397)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECS
T ss_pred CeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEec
Confidence 457777899999999999998766679999999964
No 274
>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}
Probab=95.09 E-value=0.015 Score=58.86 Aligned_cols=36 Identities=25% Similarity=0.488 Sum_probs=30.7
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
++|...+.||+|+||.||+|+-...|+.||||++..
T Consensus 24 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~ 59 (353)
T 3coi_A 24 KTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSR 59 (353)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESS
T ss_pred ceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecc
Confidence 356667889999999999999866679999999964
No 275
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...
Probab=95.07 E-value=0.015 Score=58.16 Aligned_cols=36 Identities=22% Similarity=0.477 Sum_probs=30.6
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
++|.-.+.||+|+||.||+|+-..+|+.||||.++.
T Consensus 36 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~ 71 (330)
T 3nsz_A 36 DDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKP 71 (330)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECS
T ss_pred CceEEEEEecccCCeEEEEEEECCCCcEEEEEEecc
Confidence 356677899999999999998766679999999964
No 276
>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*
Probab=95.06 E-value=0.011 Score=59.08 Aligned_cols=37 Identities=24% Similarity=0.476 Sum_probs=30.2
Q ss_pred hcccccceeccCCCceEEEEEEC---CCCeEEEEEEeecc
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFS---ENGMVVAVKVINLN 667 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~---~~g~~vAvK~l~~~ 667 (678)
++|.-.+.||+|+||.||++... ..|+.||||+++..
T Consensus 17 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~ 56 (327)
T 3a62_A 17 ECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKA 56 (327)
T ss_dssp GGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC
T ss_pred HHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHH
Confidence 45777889999999999999873 24589999999643
No 277
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*
Probab=95.05 E-value=0.009 Score=58.83 Aligned_cols=36 Identities=28% Similarity=0.375 Sum_probs=27.9
Q ss_pred cccccceeccCCCceEEEEEE----CCCCeEEEEEEeecc
Q 038612 632 EFSTSNMIGQGSFGIVYKGIF----SENGMVVAVKVINLN 667 (678)
Q Consensus 632 ~f~~~~~iG~G~~G~Vykg~l----~~~g~~vAvK~l~~~ 667 (678)
.|...+.||+|+||.||+|++ ...|+.||||+++..
T Consensus 22 ~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~ 61 (302)
T 4e5w_A 22 FLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPE 61 (302)
T ss_dssp GEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC--
T ss_pred hhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEeccc
Confidence 356678899999999999995 223589999999643
No 278
>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*
Probab=95.05 E-value=0.012 Score=58.81 Aligned_cols=44 Identities=23% Similarity=0.397 Sum_probs=32.4
Q ss_pred HHHHHHhhhcccc-cceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 623 YAALRKATNEFST-SNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 623 ~~el~~at~~f~~-~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
|+..+.-.+.+.- .+.||+|+||.||+|.....|+.||||.++.
T Consensus 20 ~~~~~~~~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~ 64 (327)
T 3lm5_A 20 FQSMENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKK 64 (327)
T ss_dssp SBCHHHHHHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEES
T ss_pred HHHHHhhhhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEeh
Confidence 3333333333433 3789999999999999876679999999964
No 279
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Probab=95.04 E-value=0.007 Score=63.82 Aligned_cols=36 Identities=25% Similarity=0.297 Sum_probs=30.8
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
++|...+.||+|+||.||+|.-...|+.||||++..
T Consensus 62 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~ 97 (464)
T 3ttj_A 62 KRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSR 97 (464)
T ss_dssp TTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEES
T ss_pred CCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECc
Confidence 457778899999999999998766669999999964
No 280
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}
Probab=95.03 E-value=0.0099 Score=60.48 Aligned_cols=39 Identities=18% Similarity=0.313 Sum_probs=30.1
Q ss_pred HhhhcccccceeccCCCceEEEEE------ECCCCeEEEEEEeecc
Q 038612 628 KATNEFSTSNMIGQGSFGIVYKGI------FSENGMVVAVKVINLN 667 (678)
Q Consensus 628 ~at~~f~~~~~iG~G~~G~Vykg~------l~~~g~~vAvK~l~~~ 667 (678)
...+.|...+.||+|+||.||+|+ ... |+.||||+++..
T Consensus 62 ~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~-~~~vavK~~~~~ 106 (365)
T 3e7e_A 62 LGSKLVYVHHLLGEGAFAQVYEATQGDLNDAKN-KQKFVLKVQKPA 106 (365)
T ss_dssp CSSSEEEEEEEEEECSSEEEEEEEC-------C-CCCEEEEEESSC
T ss_pred ECCEEEEEEEEeeccCCEEEEEEEecCCccccc-CcEEEEEEeCCC
Confidence 345667788899999999999994 333 489999999643
No 281
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*
Probab=95.01 E-value=0.016 Score=57.26 Aligned_cols=36 Identities=31% Similarity=0.576 Sum_probs=28.8
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
.+|.-.+.||+|+||.||+|....+|+.||||+++.
T Consensus 32 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~ 67 (310)
T 2wqm_A 32 ANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQI 67 (310)
T ss_dssp GGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECT
T ss_pred cceEEEEeecCCCCceEEEEEEcCCCceEEEEeeeh
Confidence 457778899999999999999865669999999964
No 282
>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}
Probab=95.00 E-value=0.0083 Score=59.42 Aligned_cols=36 Identities=22% Similarity=0.449 Sum_probs=31.0
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
++|.-.+.||+|+||.||+|....+|+.||||.+..
T Consensus 34 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~ 69 (309)
T 2h34_A 34 GPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSE 69 (309)
T ss_dssp CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGG
T ss_pred ccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCc
Confidence 457778899999999999999876679999999964
No 283
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}
Probab=94.97 E-value=0.016 Score=57.46 Aligned_cols=37 Identities=32% Similarity=0.549 Sum_probs=25.4
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
++|...+.||+|+||.||+|.....|+.||||++...
T Consensus 25 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~ 61 (318)
T 2dyl_A 25 NDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRS 61 (318)
T ss_dssp GGEEEEEEC------CEEEEEETTTCCEEEEEEEETT
T ss_pred ccccccceeeecCCeeEEEEEEecCCeEEEEEEeccc
Confidence 4577778999999999999999756699999999653
No 284
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7
Probab=94.97 E-value=0.005 Score=60.57 Aligned_cols=34 Identities=29% Similarity=0.650 Sum_probs=26.9
Q ss_pred ccccceeccCCCceEEEEEECCCCe---EEEEEEeec
Q 038612 633 FSTSNMIGQGSFGIVYKGIFSENGM---VVAVKVINL 666 (678)
Q Consensus 633 f~~~~~iG~G~~G~Vykg~l~~~g~---~vAvK~l~~ 666 (678)
|...+.||+|+||.||+|+..++++ .||||+++.
T Consensus 23 ~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~ 59 (298)
T 3pls_A 23 THSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSR 59 (298)
T ss_dssp EEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred EccCceeccCCCceEEEEEEecCCCceeeeeeeeccc
Confidence 4456889999999999998743333 799999964
No 285
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Probab=94.96 E-value=0.0067 Score=60.23 Aligned_cols=46 Identities=20% Similarity=0.318 Sum_probs=34.7
Q ss_pred eeeHHHHHHhhhcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 620 FVSYAALRKATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 620 ~~s~~el~~at~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
.+.++.+....+.|.-.+.||+|+||.||+|...+ |+.||||.+..
T Consensus 17 ~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~-~~~vavK~~~~ 62 (313)
T 3cek_A 17 NLYFQSMSVKGRIYSILKQIGSGGSSKVFQVLNEK-KQIYAIKYVNL 62 (313)
T ss_dssp ---CCEEEETTEEEEEEEEEECCSSEEEEEEECTT-CCEEEEEEEEC
T ss_pred CCCeeeeeeccceEEEEEEecCCCCEEEEEEEcCC-CcEEEEEEecc
Confidence 34444444455668888999999999999999865 49999999964
No 286
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=94.95 E-value=0.015 Score=62.63 Aligned_cols=37 Identities=27% Similarity=0.448 Sum_probs=32.2
Q ss_pred hhcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 630 TNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 630 t~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
.++|...+.||+|+||.||+|.....|+.||||++..
T Consensus 183 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k 219 (576)
T 2acx_A 183 KNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEK 219 (576)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEH
T ss_pred ccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEh
Confidence 4568888999999999999999876679999999964
No 287
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=94.93 E-value=0.015 Score=64.37 Aligned_cols=37 Identities=27% Similarity=0.397 Sum_probs=32.2
Q ss_pred hhcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 630 TNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 630 t~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
.++|.-.++||+|+||.||+|.....|+.||||+++.
T Consensus 340 ~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~ 376 (674)
T 3pfq_A 340 LTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKK 376 (674)
T ss_dssp CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEH
T ss_pred ccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEec
Confidence 3567788999999999999999877779999999964
No 288
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=94.93 E-value=0.0082 Score=65.73 Aligned_cols=30 Identities=33% Similarity=0.672 Sum_probs=25.1
Q ss_pred eeccCCCceEEEEEEC--CCCeEEEEEEeecc
Q 038612 638 MIGQGSFGIVYKGIFS--ENGMVVAVKVINLN 667 (678)
Q Consensus 638 ~iG~G~~G~Vykg~l~--~~g~~vAvK~l~~~ 667 (678)
.||+|+||.||+|++. .++..||||+++..
T Consensus 343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~ 374 (613)
T 2ozo_A 343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQG 374 (613)
T ss_dssp EEEECSSSEEEEEEEECSSCEEEEEEEECCCC
T ss_pred EEecCCCcEEEEEEEecCCCcEEEEEEEcCCC
Confidence 6999999999999884 23478999999764
No 289
>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A
Probab=94.92 E-value=0.021 Score=58.00 Aligned_cols=37 Identities=27% Similarity=0.312 Sum_probs=31.2
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
+.|.-.+.||+|+||.||++.-...|+.||||++...
T Consensus 20 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~ 56 (361)
T 3uc3_A 20 DRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERG 56 (361)
T ss_dssp TTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESS
T ss_pred CcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecC
Confidence 3466678899999999999998766799999999653
No 290
>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*
Probab=94.91 E-value=0.018 Score=56.43 Aligned_cols=38 Identities=21% Similarity=0.409 Sum_probs=32.3
Q ss_pred hhcccccceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 630 TNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 630 t~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
.++|...+.||+|+||.||+|.....|+.||||.+...
T Consensus 16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~ 53 (298)
T 1phk_A 16 YENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVT 53 (298)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETT
T ss_pred hhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecc
Confidence 34677789999999999999999766799999999643
No 291
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7
Probab=94.89 E-value=0.0097 Score=59.93 Aligned_cols=39 Identities=23% Similarity=0.434 Sum_probs=30.4
Q ss_pred hhhcccccceeccCCCceEEEEEE-----CCCCeEEEEEEeecc
Q 038612 629 ATNEFSTSNMIGQGSFGIVYKGIF-----SENGMVVAVKVINLN 667 (678)
Q Consensus 629 at~~f~~~~~iG~G~~G~Vykg~l-----~~~g~~vAvK~l~~~ 667 (678)
..++|.-.+.||+|+||.||+|+. ...++.||||++...
T Consensus 43 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~ 86 (344)
T 1rjb_A 43 PRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEK 86 (344)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC-
T ss_pred CHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccc
Confidence 345677789999999999999996 123478999999643
No 292
>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*
Probab=94.88 E-value=0.016 Score=60.56 Aligned_cols=36 Identities=31% Similarity=0.541 Sum_probs=31.4
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
++|.-.+.||+|+||.||+|+....|+.||||+++.
T Consensus 26 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~ 61 (432)
T 3n9x_A 26 DNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNR 61 (432)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECS
T ss_pred CCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCc
Confidence 457778899999999999999877779999999964
No 293
>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*
Probab=94.85 E-value=0.0097 Score=58.17 Aligned_cols=37 Identities=38% Similarity=0.426 Sum_probs=31.6
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
+.|.-.+.||+|+||.||+|+....|+.||||++...
T Consensus 22 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~ 58 (287)
T 2wei_A 22 ERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKA 58 (287)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGG
T ss_pred hcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEeccc
Confidence 4677788999999999999998656699999999643
No 294
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*
Probab=94.84 E-value=0.0078 Score=66.15 Aligned_cols=32 Identities=34% Similarity=0.588 Sum_probs=25.8
Q ss_pred cceeccCCCceEEEEEEC--CCCeEEEEEEeecc
Q 038612 636 SNMIGQGSFGIVYKGIFS--ENGMVVAVKVINLN 667 (678)
Q Consensus 636 ~~~iG~G~~G~Vykg~l~--~~g~~vAvK~l~~~ 667 (678)
.+.||+|+||.||+|.+. ..++.||||+++..
T Consensus 374 ~~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~ 407 (635)
T 4fl3_A 374 DKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNE 407 (635)
T ss_dssp EEEEEECSSEEEEEEEEECSSCEEEEEEEEECGG
T ss_pred CCEeccCCCEEEEEEEEcCCCcceEEEEEEeccc
Confidence 457999999999999773 23479999999754
No 295
>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7
Probab=94.83 E-value=0.015 Score=58.16 Aligned_cols=36 Identities=33% Similarity=0.542 Sum_probs=31.1
Q ss_pred hhhcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 629 ATNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 629 at~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
..++|.-.+.||+|+||.||+|+.. |+.||||++..
T Consensus 35 ~~~~y~~~~~lg~G~~g~V~~~~~~--~~~vavK~~~~ 70 (337)
T 3mdy_A 35 IAKQIQMVKQIGKGRYGEVWMGKWR--GEKVAVKVFFT 70 (337)
T ss_dssp HHHHCEEEEEEEEETTEEEEEEEET--TEEEEEEEEEG
T ss_pred cccceEEEeEeecCCCeEEEEEEEC--CceEEEEEEec
Confidence 3467888899999999999999985 49999999954
No 296
>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7
Probab=94.82 E-value=0.014 Score=59.50 Aligned_cols=36 Identities=22% Similarity=0.414 Sum_probs=24.6
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
+.|...+.||+|+||.||+|+-...|+.||||++..
T Consensus 25 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~ 60 (367)
T 1cm8_A 25 AVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYR 60 (367)
T ss_dssp SSEEEEEEC------CEEEEEETTTCCEEEEEECSS
T ss_pred ceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCc
Confidence 456677899999999999999866679999999953
No 297
>2eue_A Carbon catabolite derepressing protein kinase; kinase domain; 2.20A {Saccharomyces cerevisiae} PDB: 3fam_A 3hyh_A 3dae_A 2fh9_A 3mn3_A
Probab=94.81 E-value=0.017 Score=56.03 Aligned_cols=36 Identities=31% Similarity=0.508 Sum_probs=21.5
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
++|.-.+.||+|+||.||+|+-...|+.||||++..
T Consensus 13 ~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~ 48 (275)
T 2eue_A 13 GNYQIVKTLGEGSFAKVKLAYHTTTGQKVALKIINK 48 (275)
T ss_dssp CCBCCCC---------EEEEECTTTCCEEEEEEECS
T ss_pred cceEEEEEEEcCCCEEEEEEEECCCCCEEEEEEEEh
Confidence 356667889999999999998766679999999964
No 298
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Probab=94.78 E-value=0.018 Score=58.16 Aligned_cols=35 Identities=31% Similarity=0.618 Sum_probs=30.2
Q ss_pred cccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 632 EFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 632 ~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
.|.-.+.||+|+||.||+|+-...|+.||||.++.
T Consensus 25 ~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~ 59 (351)
T 3c0i_A 25 VYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDV 59 (351)
T ss_dssp HEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEH
T ss_pred ceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEh
Confidence 46677899999999999999866679999999953
No 299
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*
Probab=94.75 E-value=0.009 Score=60.28 Aligned_cols=34 Identities=21% Similarity=0.264 Sum_probs=29.5
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
++|.-.+.||+|+||.||+|.. ++ +.||||++..
T Consensus 31 ~~y~~~~~lg~G~~g~V~~~~~-~~-~~vavK~~~~ 64 (348)
T 2pml_X 31 NDYRIIRTLNQGKFNKIILCEK-DN-KFYALKKYEK 64 (348)
T ss_dssp TTEEEEEEEECCSSCCEEEEEE-TT-EEEEEEEEEH
T ss_pred CceEEEEEEcCCCCeEEEEEEc-CC-ceEEEEEeec
Confidence 4577788999999999999998 54 9999999964
No 300
>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...
Probab=94.74 E-value=0.016 Score=58.88 Aligned_cols=36 Identities=25% Similarity=0.494 Sum_probs=26.7
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
+.|...+.||+|+||.||+|.-...|+.||||++..
T Consensus 29 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~ 64 (367)
T 2fst_X 29 ERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSR 64 (367)
T ss_dssp TTEEEEEECC----CCEEEEEETTTTEEEEEEECSS
T ss_pred CceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCc
Confidence 456777899999999999998766679999999954
No 301
>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...
Probab=94.71 E-value=0.023 Score=55.27 Aligned_cols=36 Identities=31% Similarity=0.565 Sum_probs=30.9
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
++|.-.+.||+|+||.||+|....+++.||||.+..
T Consensus 14 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~ 49 (284)
T 2vgo_A 14 DDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFK 49 (284)
T ss_dssp GGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEH
T ss_pred hhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcc
Confidence 356777899999999999999876679999999953
No 302
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}
Probab=94.69 E-value=0.021 Score=56.48 Aligned_cols=38 Identities=37% Similarity=0.709 Sum_probs=27.4
Q ss_pred hhcccccceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 630 TNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 630 t~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
.+.|...+.||+|+||.||+|+....|+.||||++...
T Consensus 28 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~ 65 (314)
T 3com_A 28 EEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVE 65 (314)
T ss_dssp --CEEEEEECC----CEEEEEEETTTCCEEEEEEEETT
T ss_pred hhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCch
Confidence 34577788999999999999998766799999999653
No 303
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}
Probab=94.68 E-value=0.011 Score=59.85 Aligned_cols=37 Identities=11% Similarity=0.216 Sum_probs=29.0
Q ss_pred hcccccceeccCCCceEEEEEECC--------CCeEEEEEEeecc
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSE--------NGMVVAVKVINLN 667 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~--------~g~~vAvK~l~~~ 667 (678)
++|.-.+.||+|+||.||+|+... .|+.||||++...
T Consensus 42 ~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~ 86 (352)
T 2jii_A 42 RQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD 86 (352)
T ss_dssp CEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT
T ss_pred CeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc
Confidence 457778899999999999999864 2589999999643
No 304
>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B
Probab=94.64 E-value=0.021 Score=58.00 Aligned_cols=38 Identities=24% Similarity=0.595 Sum_probs=32.4
Q ss_pred hhcccccceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 630 TNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 630 t~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
.++|.-.+.||+|+||.||+|+-...|+.||||.+...
T Consensus 28 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~ 65 (362)
T 2bdw_A 28 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTK 65 (362)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETT
T ss_pred ccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcc
Confidence 35677789999999999999998766799999999643
No 305
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=94.61 E-value=0.011 Score=60.42 Aligned_cols=34 Identities=38% Similarity=0.727 Sum_probs=26.2
Q ss_pred ccccceeccCCCceEEEEEECC-CC--eEEEEEEeec
Q 038612 633 FSTSNMIGQGSFGIVYKGIFSE-NG--MVVAVKVINL 666 (678)
Q Consensus 633 f~~~~~iG~G~~G~Vykg~l~~-~g--~~vAvK~l~~ 666 (678)
|.-.+.||+|+||.||+|++.+ ++ ..||||+++.
T Consensus 91 ~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~ 127 (373)
T 3c1x_A 91 VHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNR 127 (373)
T ss_dssp EEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCS
T ss_pred eecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCC
Confidence 4446789999999999998732 22 4789999964
No 306
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*
Probab=94.60 E-value=0.01 Score=59.00 Aligned_cols=35 Identities=29% Similarity=0.473 Sum_probs=27.6
Q ss_pred ccccceeccCCCceEEEEEEC----CCCeEEEEEEeecc
Q 038612 633 FSTSNMIGQGSFGIVYKGIFS----ENGMVVAVKVINLN 667 (678)
Q Consensus 633 f~~~~~iG~G~~G~Vykg~l~----~~g~~vAvK~l~~~ 667 (678)
|...+.||+|+||.||+|++. ..|+.||||+++..
T Consensus 33 ~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~ 71 (318)
T 3lxp_A 33 LKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKAD 71 (318)
T ss_dssp EEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTT
T ss_pred HhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccc
Confidence 455688999999999999863 13489999999754
No 307
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Probab=94.57 E-value=0.017 Score=60.77 Aligned_cols=36 Identities=31% Similarity=0.440 Sum_probs=22.5
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
+.|.-.+.||+|+||.||+|.-...|+.||||++..
T Consensus 53 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~ 88 (458)
T 3rp9_A 53 DRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILR 88 (458)
T ss_dssp TTEEECCC-------CEEEEEECC--CEEEEEEECS
T ss_pred CCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEech
Confidence 457778899999999999998765669999999954
No 308
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A
Probab=94.56 E-value=0.023 Score=55.45 Aligned_cols=34 Identities=35% Similarity=0.426 Sum_probs=28.6
Q ss_pred ccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 633 f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
|.-.+.||+|+||.||+|.....+..||||.+..
T Consensus 28 ~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~ 61 (290)
T 1t4h_A 28 LKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQD 61 (290)
T ss_dssp EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEG
T ss_pred EEeeeeccCCCCeEEEEeEecCCceEEEEEEecc
Confidence 3335679999999999999877778999999964
No 309
>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*
Probab=94.55 E-value=0.013 Score=58.53 Aligned_cols=35 Identities=29% Similarity=0.582 Sum_probs=28.7
Q ss_pred cccccceeccCCCceEEEEEECCCCeE--EEEEEeec
Q 038612 632 EFSTSNMIGQGSFGIVYKGIFSENGMV--VAVKVINL 666 (678)
Q Consensus 632 ~f~~~~~iG~G~~G~Vykg~l~~~g~~--vAvK~l~~ 666 (678)
+|.-.+.||+|+||.||+|....+|.. ||||+++.
T Consensus 26 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~ 62 (327)
T 1fvr_A 26 DIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKE 62 (327)
T ss_dssp GCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred HccceeeeecCCCceEEEEEEccCCcccceeeeeecc
Confidence 466778999999999999998655564 49999964
No 310
>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*
Probab=94.52 E-value=0.021 Score=55.92 Aligned_cols=36 Identities=17% Similarity=0.334 Sum_probs=30.9
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
+.|...+.||+|+||.||+|...+.|+.||+|.+..
T Consensus 15 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~ 50 (294)
T 2rku_A 15 RRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPK 50 (294)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEG
T ss_pred cceEEEEEEeecCCEEEEEEEECCCCceEEEEEech
Confidence 346667899999999999999977779999999964
No 311
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*
Probab=94.52 E-value=0.025 Score=54.21 Aligned_cols=31 Identities=23% Similarity=0.260 Sum_probs=26.0
Q ss_pred ccceeccCCCceEEEEEE-CCCCeE--EEEEEeec
Q 038612 635 TSNMIGQGSFGIVYKGIF-SENGMV--VAVKVINL 666 (678)
Q Consensus 635 ~~~~iG~G~~G~Vykg~l-~~~g~~--vAvK~l~~ 666 (678)
-.+.||+|+||.||+|.. .+ |+. ||||..+.
T Consensus 51 i~~~ig~G~~g~Vy~a~~~~~-g~~~~vAvK~~~~ 84 (258)
T 1zth_A 51 MGGVISTGKEANVFYADGVFD-GKPVAMAVKIYRI 84 (258)
T ss_dssp EEEEEEECSSEEEEEEEEEET-TEEEEEEEEEECC
T ss_pred hCCEEeecceEEEEEEEEcCC-CcEeeEEEEEEEC
Confidence 457899999999999998 44 488 99998754
No 312
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A
Probab=94.47 E-value=0.027 Score=57.29 Aligned_cols=36 Identities=22% Similarity=0.281 Sum_probs=30.3
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
++|.-.+.||+|+||.||+|+-...|+.||||+++.
T Consensus 19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~ 54 (373)
T 1q8y_A 19 ARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRG 54 (373)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECS
T ss_pred CeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecC
Confidence 346667899999999999999755669999999964
No 313
>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...
Probab=94.46 E-value=0.027 Score=57.32 Aligned_cols=36 Identities=25% Similarity=0.281 Sum_probs=30.8
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
++|...+.||+|+||.||+|.-...|+.||||++..
T Consensus 25 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~ 60 (371)
T 2xrw_A 25 KRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSR 60 (371)
T ss_dssp TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEC
T ss_pred hheeEeeeeEecCCEEEEEEEECCCCceEEEEEecc
Confidence 457778899999999999998765569999999964
No 314
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*
Probab=94.46 E-value=0.01 Score=57.73 Aligned_cols=36 Identities=31% Similarity=0.541 Sum_probs=28.9
Q ss_pred hcccccceeccCCCceEEEEEECCC---CeEEEEEEeec
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSEN---GMVVAVKVINL 666 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~---g~~vAvK~l~~ 666 (678)
+.|.-.+.||+|+||.||+|+...+ +..||||+.+.
T Consensus 15 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~ 53 (281)
T 1mp8_A 15 ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKN 53 (281)
T ss_dssp GGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTT
T ss_pred HHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccc
Confidence 4566778999999999999988432 36799999864
No 315
>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...
Probab=94.44 E-value=0.019 Score=56.87 Aligned_cols=46 Identities=20% Similarity=0.259 Sum_probs=34.7
Q ss_pred eHHHHHHhhhcccccceeccCCCceEEEEEEC-----CCCeEEEEEEeecc
Q 038612 622 SYAALRKATNEFSTSNMIGQGSFGIVYKGIFS-----ENGMVVAVKVINLN 667 (678)
Q Consensus 622 s~~el~~at~~f~~~~~iG~G~~G~Vykg~l~-----~~g~~vAvK~l~~~ 667 (678)
...+.....++|.-.+.||+|+||.||+|+.. ..|+.||||+++..
T Consensus 18 ~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~ 68 (316)
T 2xir_A 18 DASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEG 68 (316)
T ss_dssp CHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTT
T ss_pred cccceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccC
Confidence 34444445567888899999999999999852 23489999999654
No 316
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Probab=94.37 E-value=0.025 Score=56.61 Aligned_cols=35 Identities=31% Similarity=0.542 Sum_probs=29.2
Q ss_pred cccccceeccCCCceEEEEEE-CCCCeEEEEEEeec
Q 038612 632 EFSTSNMIGQGSFGIVYKGIF-SENGMVVAVKVINL 666 (678)
Q Consensus 632 ~f~~~~~iG~G~~G~Vykg~l-~~~g~~vAvK~l~~ 666 (678)
.|.-.+.||+|+||.||+|+- ..+|+.||||+++.
T Consensus 15 ~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~ 50 (339)
T 1z57_A 15 RYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKN 50 (339)
T ss_dssp TEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECS
T ss_pred ceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEec
Confidence 466678899999999999986 33569999999964
No 317
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*
Probab=94.37 E-value=0.0072 Score=59.23 Aligned_cols=36 Identities=31% Similarity=0.527 Sum_probs=26.3
Q ss_pred cccccc-eeccCCCceEEEEEE--CCCCeEEEEEEeecc
Q 038612 632 EFSTSN-MIGQGSFGIVYKGIF--SENGMVVAVKVINLN 667 (678)
Q Consensus 632 ~f~~~~-~iG~G~~G~Vykg~l--~~~g~~vAvK~l~~~ 667 (678)
.|.-.. .||+|+||.||+|.. ...++.||||+++..
T Consensus 17 ~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~ 55 (291)
T 1xbb_A 17 LLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNE 55 (291)
T ss_dssp GEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC--
T ss_pred hhhhccCccccccCeeeEeeeecCCCceeeEEEEeeccc
Confidence 344444 899999999999965 333489999999643
No 318
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=94.36 E-value=0.016 Score=61.66 Aligned_cols=36 Identities=19% Similarity=0.277 Sum_probs=27.4
Q ss_pred cccccceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 632 EFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 632 ~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
.|...+.||+|+||.||+|+-...|+.||||.+...
T Consensus 38 ~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~ 73 (494)
T 3lij_A 38 MYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKT 73 (494)
T ss_dssp HEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-
T ss_pred CeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEecc
Confidence 466678999999999999998766799999999643
No 319
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Probab=94.35 E-value=0.0092 Score=59.62 Aligned_cols=36 Identities=33% Similarity=0.539 Sum_probs=26.1
Q ss_pred hcccccceeccCCCceEEEEEEC-----CCCeEEEEEEeec
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFS-----ENGMVVAVKVINL 666 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~-----~~g~~vAvK~l~~ 666 (678)
++|.-.+.||+|+||.||+|... ..|+.||||++..
T Consensus 30 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~ 70 (327)
T 2yfx_A 30 KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPE 70 (327)
T ss_dssp GGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCS
T ss_pred hheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEecc
Confidence 45777889999999999999852 2347899999964
No 320
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}
Probab=94.33 E-value=0.013 Score=60.01 Aligned_cols=37 Identities=24% Similarity=0.351 Sum_probs=28.8
Q ss_pred hcccccceeccCCCceEEEEEEC-------CCCeEEEEEEeecc
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFS-------ENGMVVAVKVINLN 667 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~-------~~g~~vAvK~l~~~ 667 (678)
+.|.-.+.||+|+||.||+|+.. ..+..||||+++..
T Consensus 69 ~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~ 112 (382)
T 3tt0_A 69 DRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSD 112 (382)
T ss_dssp GGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTT
T ss_pred hheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccc
Confidence 35666788999999999999862 12368999999653
No 321
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}
Probab=94.31 E-value=0.038 Score=54.72 Aligned_cols=34 Identities=32% Similarity=0.739 Sum_probs=27.9
Q ss_pred hhcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 630 TNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 630 t~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
.++|.-.+.||+|+||.||+|.... .||||.++.
T Consensus 32 ~~~~~~~~~lg~G~~g~V~~~~~~~---~~avk~~~~ 65 (319)
T 2y4i_B 32 FEQLEIGELIGKGRFGQVYHGRWHG---EVAIRLIDI 65 (319)
T ss_dssp CSCEECCCBCCCSSSSEEEEEEESS---SEEEEECCC
T ss_pred HHHeEEeeEeccCCceEEEEEEEcC---eEEEEEeec
Confidence 3456778899999999999999852 399999964
No 322
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=94.26 E-value=0.026 Score=58.09 Aligned_cols=30 Identities=20% Similarity=0.219 Sum_probs=26.7
Q ss_pred ceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 637 NMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 637 ~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
++||+|+||.||+|.-...|+.||||+++.
T Consensus 68 ~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~ 97 (400)
T 1nxk_A 68 QVLGLGINGKVLQIFNKRTQEKFALKMLQD 97 (400)
T ss_dssp EEEEEETTEEEEEEEETTTCCEEEEEEEEC
T ss_pred ceeeeccCeEEEEEEECCCCCEEEEEEeCc
Confidence 689999999999999876679999999953
No 323
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}
Probab=94.25 E-value=0.013 Score=58.65 Aligned_cols=36 Identities=39% Similarity=0.755 Sum_probs=27.9
Q ss_pred hcccccceeccCCCceEEEEEECCCCe----EEEEEEeec
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGM----VVAVKVINL 666 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~----~vAvK~l~~ 666 (678)
++|...+.||+|+||.||+|.....|+ .||+|++..
T Consensus 15 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~ 54 (327)
T 3lzb_A 15 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELRE 54 (327)
T ss_dssp TTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECC
T ss_pred hHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeecc
Confidence 357778899999999999999754445 458888754
No 324
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...
Probab=94.23 E-value=0.027 Score=56.31 Aligned_cols=37 Identities=24% Similarity=0.454 Sum_probs=28.8
Q ss_pred hcccccceeccCCCceEEEEEEC-------CCCeEEEEEEeecc
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFS-------ENGMVVAVKVINLN 667 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~-------~~g~~vAvK~l~~~ 667 (678)
++|.-.+.||+|+||.||+|... ..++.||||+++..
T Consensus 35 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~ 78 (334)
T 2pvf_A 35 DKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDD 78 (334)
T ss_dssp GGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTT
T ss_pred hHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccC
Confidence 45677789999999999999873 23478999999643
No 325
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}
Probab=94.23 E-value=0.032 Score=58.84 Aligned_cols=35 Identities=34% Similarity=0.546 Sum_probs=29.8
Q ss_pred cccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 632 EFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 632 ~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
+|.-.+.||+|+||.||+|+-...|+.||||.++.
T Consensus 17 ~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~ 51 (476)
T 2y94_A 17 HYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNR 51 (476)
T ss_dssp TEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEH
T ss_pred CEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEh
Confidence 45567889999999999999865669999999964
No 326
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=94.22 E-value=0.028 Score=56.34 Aligned_cols=35 Identities=34% Similarity=0.617 Sum_probs=30.5
Q ss_pred hhcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 630 TNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 630 t~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
.++|.-.+.||+|+||.||+|+.. |+.||||+++.
T Consensus 41 ~~~y~~~~~lg~G~~g~Vy~~~~~--~~~vavK~~~~ 75 (342)
T 1b6c_B 41 ARTIVLQESIGKGRFGEVWRGKWR--GEEVAVKIFSS 75 (342)
T ss_dssp HHHCEEEEEEEEETTEEEEEEEET--TEEEEEEEECG
T ss_pred cccEEEEeeecCCCCcEEEEEEEc--CccEEEEEeCc
Confidence 456888899999999999999984 49999999954
No 327
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*
Probab=94.18 E-value=0.027 Score=56.39 Aligned_cols=36 Identities=17% Similarity=0.334 Sum_probs=30.9
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
+.|...+.||+|+||.||++...++|+.||+|.+..
T Consensus 41 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~ 76 (335)
T 2owb_A 41 RRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPK 76 (335)
T ss_dssp EEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEG
T ss_pred CceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEech
Confidence 346667899999999999999977779999999964
No 328
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*
Probab=94.16 E-value=0.03 Score=55.03 Aligned_cols=30 Identities=20% Similarity=0.219 Sum_probs=26.6
Q ss_pred ceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 637 NMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 637 ~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
++||+|+||.||+|.-...|+.||||+++.
T Consensus 24 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~ 53 (299)
T 3m2w_A 24 QVLGLGINGKVLQIFNKRTQEKFALKMLQD 53 (299)
T ss_dssp EEEEEETTEEEEEEEETTTCCEEEEEEEEC
T ss_pred cccccCCCeEEEEEEEcCCCcEEEEEEecc
Confidence 779999999999999866669999999964
No 329
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=94.11 E-value=0.034 Score=59.32 Aligned_cols=37 Identities=22% Similarity=0.269 Sum_probs=29.7
Q ss_pred hhcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 630 TNEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 630 t~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
.+.|...+.||+|+||.||+|+-..+|+.||||++..
T Consensus 35 ~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~ 71 (504)
T 3q5i_A 35 GESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKK 71 (504)
T ss_dssp GGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC
T ss_pred ccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEh
Confidence 3456677899999999999999877779999999964
No 330
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*
Probab=94.06 E-value=0.032 Score=55.16 Aligned_cols=37 Identities=30% Similarity=0.440 Sum_probs=29.6
Q ss_pred hcccccceeccCCCceEEEEEE-----CCCCeEEEEEEeecc
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIF-----SENGMVVAVKVINLN 667 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l-----~~~g~~vAvK~l~~~ 667 (678)
++|.-.+.||+|+||.||+|+. ..+|+.||||+++..
T Consensus 23 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~ 64 (314)
T 2ivs_A 23 KNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKEN 64 (314)
T ss_dssp GGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTT
T ss_pred hheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCC
Confidence 4566678899999999999986 233489999999643
No 331
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}
Probab=94.00 E-value=0.03 Score=57.52 Aligned_cols=35 Identities=31% Similarity=0.634 Sum_probs=28.8
Q ss_pred cccccceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 632 EFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 632 ~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
.|...+.||+|+||.||+|....+ ..||||++...
T Consensus 41 ~Y~~~~~lG~G~~g~V~~a~~~~~-~~~aikk~~~~ 75 (394)
T 4e7w_A 41 AYTNCKVIGNGSFGVVFQAKLVES-DEVAIKKVLQD 75 (394)
T ss_dssp EEEEEEEEEEETTEEEEEEEETTT-EEEEEEEEECC
T ss_pred eEEEeEEEeeCCCeEEEEEEECCC-CeEEEEEEecC
Confidence 456678999999999999999766 56999998543
No 332
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...
Probab=93.95 E-value=0.011 Score=57.97 Aligned_cols=34 Identities=44% Similarity=0.739 Sum_probs=27.5
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
+.|.-.+.||+|+||.||+|+.. ..||||+++..
T Consensus 24 ~~y~~~~~lG~G~~g~Vy~~~~~---~~vavK~~~~~ 57 (289)
T 3og7_A 24 GQITVGQRIGSGSFGTVYKGKWH---GDVAVKMLNVT 57 (289)
T ss_dssp TSCEEEEEEEECSSEEEEEEESS---SEEEEEEESCS
T ss_pred cceeeeeEecCCCCeEEEEEEEc---CceEEEEEecc
Confidence 34666789999999999999874 34999999643
No 333
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*
Probab=93.91 E-value=0.017 Score=57.10 Aligned_cols=40 Identities=30% Similarity=0.556 Sum_probs=28.5
Q ss_pred HhhhcccccceeccCCCceEEEEEECC---CCeEEEEEEeecc
Q 038612 628 KATNEFSTSNMIGQGSFGIVYKGIFSE---NGMVVAVKVINLN 667 (678)
Q Consensus 628 ~at~~f~~~~~iG~G~~G~Vykg~l~~---~g~~vAvK~l~~~ 667 (678)
...++|.-.+.||+|+||.||+|.... .++.||||+++..
T Consensus 31 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~ 73 (313)
T 3brb_A 31 IDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLD 73 (313)
T ss_dssp CCGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---
T ss_pred cCHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEecc
Confidence 344567778899999999999998743 2358999999643
No 334
>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A
Probab=93.89 E-value=0.036 Score=56.10 Aligned_cols=32 Identities=19% Similarity=0.106 Sum_probs=27.1
Q ss_pred cccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 634 STSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 634 ~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
.-...||+|+||.||+|.-++| +.||||.++.
T Consensus 98 ~I~~~IG~Gk~a~VY~a~d~~G-~~vAvKi~r~ 129 (397)
T 4gyi_A 98 SVGSRIGVGKESDIMIVADEKG-KQKVLKIHRL 129 (397)
T ss_dssp EEEEEEEECSSEEEEEEECTTC-CEEEEEEECT
T ss_pred EecCEeeeCCceEEEEEECCCC-CEEEEEEEec
Confidence 3467899999999999998764 9999999864
No 335
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*
Probab=93.80 E-value=0.041 Score=58.36 Aligned_cols=35 Identities=40% Similarity=0.445 Sum_probs=30.1
Q ss_pred cccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 632 EFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 632 ~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
.|.-.+.||+|+||.||+|+-...|+.||||++..
T Consensus 23 ~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~ 57 (486)
T 3mwu_A 23 RYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINK 57 (486)
T ss_dssp HEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEH
T ss_pred ceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEec
Confidence 46667899999999999999866669999999953
No 336
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=93.80 E-value=0.042 Score=58.20 Aligned_cols=36 Identities=33% Similarity=0.447 Sum_probs=30.7
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
+.|...+.||+|+||.||+|.-...|+.||||++..
T Consensus 26 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~ 61 (484)
T 3nyv_A 26 DRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISK 61 (484)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEET
T ss_pred CceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEh
Confidence 346667899999999999999876679999999964
No 337
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*
Probab=93.57 E-value=0.043 Score=56.24 Aligned_cols=37 Identities=27% Similarity=0.416 Sum_probs=31.2
Q ss_pred hcccccceeccC--CCceEEEEEECCCCeEEEEEEeecc
Q 038612 631 NEFSTSNMIGQG--SFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 631 ~~f~~~~~iG~G--~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
++|.-.+.||+| +||.||+|+....|+.||||+++..
T Consensus 25 ~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~ 63 (389)
T 3gni_B 25 GCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLE 63 (389)
T ss_dssp GGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGG
T ss_pred CcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEeccc
Confidence 346667899999 9999999999766799999999643
No 338
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...
Probab=93.56 E-value=0.016 Score=56.82 Aligned_cols=35 Identities=37% Similarity=0.635 Sum_probs=26.2
Q ss_pred cccccceeccCCCceEEEEEECCCC---eEEEEEEeec
Q 038612 632 EFSTSNMIGQGSFGIVYKGIFSENG---MVVAVKVINL 666 (678)
Q Consensus 632 ~f~~~~~iG~G~~G~Vykg~l~~~g---~~vAvK~l~~ 666 (678)
.|.-.+.||+|+||.||+|+..+++ ..||||+++.
T Consensus 26 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~ 63 (298)
T 3f66_A 26 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNR 63 (298)
T ss_dssp EEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETT
T ss_pred ehhhcceeeecCCceEEEEEEecCCCceeEEEEEeccc
Confidence 3555688999999999999974322 3689999965
No 339
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*
Probab=93.46 E-value=0.046 Score=55.03 Aligned_cols=36 Identities=25% Similarity=0.418 Sum_probs=29.4
Q ss_pred hcccccceeccCCCceEEEEEECCC-CeEEEEEEeec
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSEN-GMVVAVKVINL 666 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~-g~~vAvK~l~~ 666 (678)
++|.-.+.||+|+||.||+|+-... ++.||||+++.
T Consensus 19 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~ 55 (355)
T 2eu9_A 19 ERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRN 55 (355)
T ss_dssp TTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECS
T ss_pred ccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEcc
Confidence 3566778999999999999987433 37999999964
No 340
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Probab=93.38 E-value=0.054 Score=54.04 Aligned_cols=40 Identities=28% Similarity=0.407 Sum_probs=31.4
Q ss_pred HhhhcccccceeccCCCceEEEEEECCCC-----eEEEEEEeecc
Q 038612 628 KATNEFSTSNMIGQGSFGIVYKGIFSENG-----MVVAVKVINLN 667 (678)
Q Consensus 628 ~at~~f~~~~~iG~G~~G~Vykg~l~~~g-----~~vAvK~l~~~ 667 (678)
-..++|.-.+.||+|+||.||+|.....| ..||||.++..
T Consensus 43 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~ 87 (333)
T 2i1m_A 43 FPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKST 87 (333)
T ss_dssp CCTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTT
T ss_pred CCHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccc
Confidence 33466777899999999999999974333 38999999653
No 341
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=93.36 E-value=0.016 Score=64.35 Aligned_cols=36 Identities=22% Similarity=0.423 Sum_probs=29.8
Q ss_pred hcccccceeccCCCceEEEEEECC-CCeEEEEEEeec
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSE-NGMVVAVKVINL 666 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~-~g~~vAvK~l~~ 666 (678)
+.|.-.+.||+|+||.||+|+... +|+.||||++..
T Consensus 80 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~ 116 (681)
T 2pzi_A 80 GQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVH 116 (681)
T ss_dssp TTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCS
T ss_pred CceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCc
Confidence 456777899999999999999853 359999999954
No 342
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain, alternative splicing, ATP-binding, disease MU kinase, metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Probab=93.31 E-value=0.021 Score=56.37 Aligned_cols=32 Identities=50% Similarity=0.744 Sum_probs=26.3
Q ss_pred cccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 632 EFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 632 ~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
.|.-.+.||+|+||.||+|... ..||||.++.
T Consensus 37 ~~~~~~~lG~G~~g~Vy~~~~~---~~~avk~~k~ 68 (307)
T 3lb7_A 37 EVMLSTRIGSGSFGTVYKGKWH---GDVAVKILKV 68 (307)
T ss_dssp SCCEEEEEEECSSCEEEEEESS---SEEEEEECCC
T ss_pred ceEEEeEecCCCCeEEEEEEEC---CEEEEEEEec
Confidence 4666788999999999999874 3589999864
No 343
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Probab=93.26 E-value=0.035 Score=55.88 Aligned_cols=37 Identities=27% Similarity=0.462 Sum_probs=24.5
Q ss_pred hcccccceeccCCCceEEEEEECC---CCeEEEEEEeecc
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSE---NGMVVAVKVINLN 667 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~---~g~~vAvK~l~~~ 667 (678)
++|.-.+.||+|+||.||+|.... .+..||||+....
T Consensus 37 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~ 76 (345)
T 2v62_A 37 NQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQE 76 (345)
T ss_dssp CEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC
T ss_pred ceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecC
Confidence 456777899999999999999864 4589999999653
No 344
>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=93.13 E-value=0.045 Score=56.44 Aligned_cols=31 Identities=29% Similarity=0.449 Sum_probs=20.8
Q ss_pred cceeccCCCceEEEEEECC--CCeEEEEEEeec
Q 038612 636 SNMIGQGSFGIVYKGIFSE--NGMVVAVKVINL 666 (678)
Q Consensus 636 ~~~iG~G~~G~Vykg~l~~--~g~~vAvK~l~~ 666 (678)
.+.||+|+||.||+|...+ .++.||||++..
T Consensus 26 g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~ 58 (405)
T 3rgf_A 26 GCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEG 58 (405)
T ss_dssp SCCCC-----EEEEEEESSSSCCCCEEEEECSS
T ss_pred CcEeeecCCeEEEEEEEccCCCCeEEEEEEECC
Confidence 4579999999999999753 248999999964
No 345
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*
Probab=93.12 E-value=0.015 Score=56.78 Aligned_cols=36 Identities=33% Similarity=0.660 Sum_probs=21.9
Q ss_pred hcccccceeccCCCceEEEEEECC-CC--eEEEEEEeec
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSE-NG--MVVAVKVINL 666 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~-~g--~~vAvK~l~~ 666 (678)
++|.-.+.||+|+||.||+|+... ++ ..||||+++.
T Consensus 18 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~ 56 (291)
T 1u46_A 18 KDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKP 56 (291)
T ss_dssp GGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC---
T ss_pred hHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEcc
Confidence 356677899999999999998732 22 3799999964
No 346
>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}
Probab=92.81 E-value=0.058 Score=56.10 Aligned_cols=35 Identities=40% Similarity=0.667 Sum_probs=27.6
Q ss_pred hhcccccceeccCCCce-EEEEEECCCCeEEEEEEeec
Q 038612 630 TNEFSTSNMIGQGSFGI-VYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 630 t~~f~~~~~iG~G~~G~-Vykg~l~~~g~~vAvK~l~~ 666 (678)
...|...++||+|+||+ ||++.. ++ +.||||++..
T Consensus 23 ~~~y~~~~~LG~G~~G~V~~~~~~-~~-~~vAvK~~~~ 58 (432)
T 3p23_A 23 KISFCPKDVLGHGAEGTIVYRGMF-DN-RDVAVKRILP 58 (432)
T ss_dssp TEEEEEEEEEEECGGGCEEEEEES-SS-SEEEEEEECT
T ss_pred cEEEecCCeeecCcCEEEEEEEEe-CC-eEEEEEEECH
Confidence 34688889999999999 555555 44 9999999964
No 347
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=92.66 E-value=0.04 Score=60.73 Aligned_cols=38 Identities=32% Similarity=0.509 Sum_probs=29.6
Q ss_pred hhcccccceeccCCCceEEEEEECC---CCeEEEEEEeecc
Q 038612 630 TNEFSTSNMIGQGSFGIVYKGIFSE---NGMVVAVKVINLN 667 (678)
Q Consensus 630 t~~f~~~~~iG~G~~G~Vykg~l~~---~g~~vAvK~l~~~ 667 (678)
.+.|.-.+.||+|+||.||+|+... .+..||||+++..
T Consensus 389 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~ 429 (656)
T 2j0j_A 389 RERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNC 429 (656)
T ss_dssp GGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSST
T ss_pred cccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEeccc
Confidence 3456667889999999999999842 2368999998643
No 348
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*
Probab=92.58 E-value=0.072 Score=55.48 Aligned_cols=33 Identities=30% Similarity=0.296 Sum_probs=25.4
Q ss_pred ccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 633 f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
+...++||+|+||+||.+...+ |+.||||++..
T Consensus 17 ~~~~~~LG~G~~g~V~~~~~~~-g~~vAvK~~~~ 49 (434)
T 2rio_A 17 VVSEKILGYGSSGTVVFQGSFQ-GRPVAVKRMLI 49 (434)
T ss_dssp EEEEEEEEECSTTCEEEEEESS-SSEEEEEEEEG
T ss_pred eeccCeEeeCCCeEEEEEEEEC-CeEEEEEEEcH
Confidence 3346889999999997555544 49999999864
No 349
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=92.03 E-value=0.01 Score=64.87 Aligned_cols=36 Identities=28% Similarity=0.486 Sum_probs=29.3
Q ss_pred hcccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
++|.-.+.||+|+||.||+|.....|+.||||+++.
T Consensus 14 grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~ 49 (676)
T 3qa8_A 14 GPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQ 49 (676)
T ss_dssp ---CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCS
T ss_pred CCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecc
Confidence 457778899999999999999866679999999864
No 350
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=87.50 E-value=0.51 Score=50.43 Aligned_cols=31 Identities=16% Similarity=0.208 Sum_probs=18.6
Q ss_pred cccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 634 STSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 634 ~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
...++||+|+||.||||... ++.+|+|+...
T Consensus 339 ~~~~~LG~G~fg~Vy~~~~~--~~~~~~k~~~~ 369 (540)
T 3en9_A 339 IPEHLIGKGAEADIKRDSYL--DFDVIIKERVK 369 (540)
T ss_dssp ---------CCEEEEEEECS--SCEEEEEEECC
T ss_pred CCCCEEeeCCCEEEEEEEEC--CCeEEEEEEec
Confidence 34678999999999999774 48899999854
No 351
>3d1u_A Putative fructosamine-3-kinase; YP_290396.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.85A {Thermobifida fusca} PDB: 3f7w_A
Probab=81.89 E-value=0.59 Score=45.29 Aligned_cols=32 Identities=13% Similarity=0.094 Sum_probs=26.7
Q ss_pred cccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 634 STSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 634 ~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
.....+|.|.++.||+.++.+| +.++||+...
T Consensus 18 ~~~~~l~gG~~n~vy~v~~~dG-~~~vvK~~~~ 49 (288)
T 3d1u_A 18 AAVAERGHSHRWHLYRVELADG-TPLFVKALPD 49 (288)
T ss_dssp EEEEEEEEETTEEEEEEEETTS-CEEEEEECCT
T ss_pred cceeeeCCcchhheEEEEeCCC-CeEEEEecCC
Confidence 4456799999999999999765 8999999754
No 352
>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...
Probab=78.24 E-value=1.1 Score=42.76 Aligned_cols=25 Identities=24% Similarity=0.602 Sum_probs=21.0
Q ss_pred hcccccceeccCCCceEEEEEECCC
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFSEN 655 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~~~ 655 (678)
+.|.-.+.||+|+||.||+|...++
T Consensus 13 ~~y~~~~~lg~G~~g~Vy~~~~~~~ 37 (279)
T 1qpc_A 13 ETLKLVERLGAGQFGEVWMGYYNGH 37 (279)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTT
T ss_pred HhhhheeeecCCCCeEEEEEEEcCC
Confidence 4566678999999999999998654
No 353
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}
Probab=71.06 E-value=1.9 Score=42.47 Aligned_cols=23 Identities=35% Similarity=0.820 Sum_probs=19.8
Q ss_pred hcccccceeccCCCceEEEEEEC
Q 038612 631 NEFSTSNMIGQGSFGIVYKGIFS 653 (678)
Q Consensus 631 ~~f~~~~~iG~G~~G~Vykg~l~ 653 (678)
++|.-.+.||+|+||.||+|+..
T Consensus 13 ~~y~~~~~lg~G~~g~Vy~~~~~ 35 (336)
T 3g2f_A 13 DNLKLLELIGRGRYGAVYKGSLD 35 (336)
T ss_dssp TSEEEEEEEEECSSEEEEEEEET
T ss_pred HHhheeeecccCCCeEEEEEEEC
Confidence 45677789999999999999984
No 354
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=64.20 E-value=1 Score=28.90 Aligned_cols=8 Identities=25% Similarity=0.526 Sum_probs=3.3
Q ss_pred hhheeecc
Q 038612 596 VVYARRRR 603 (678)
Q Consensus 596 ~~~~~~~~ 603 (678)
.+|.|||+
T Consensus 32 ~~~~RRR~ 39 (44)
T 2jwa_A 32 GILIKRRQ 39 (44)
T ss_dssp HHHHHHHC
T ss_pred Hhheehhh
Confidence 33444443
No 355
>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}
Probab=61.47 E-value=3.7 Score=39.47 Aligned_cols=33 Identities=12% Similarity=0.092 Sum_probs=27.3
Q ss_pred ccccceeccCCCceEEEEEECCCCeEEEEEEeec
Q 038612 633 FSTSNMIGQGSFGIVYKGIFSENGMVVAVKVINL 666 (678)
Q Consensus 633 f~~~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~~ 666 (678)
+..-..+|.|..+.|||-++.|| +.|.||+-..
T Consensus 17 v~~v~~~g~G~~~~vyrv~l~DG-~~~~vK~~~~ 49 (288)
T 3f7w_A 17 VAAVAERGHSHRWHLYRVELADG-TPLFVKALPD 49 (288)
T ss_dssp EEEEEEEEEETTEEEEEEEETTS-CEEEEEECCT
T ss_pred eEEEEecCCCCCeEEEEEEECCC-CEEEEEEeCC
Confidence 44556789999999999999876 9999998753
No 356
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=51.82 E-value=17 Score=28.22 Aligned_cols=43 Identities=12% Similarity=0.051 Sum_probs=20.2
Q ss_pred ccccChhhcCCccCcEEeccCCCCccCCCccCCCCCCCCEEEcc
Q 038612 111 RGQLPASIGNLSALQAFDVGENTLHGRIPESLGQLRSLKFLNVE 154 (678)
Q Consensus 111 ~~~~~~~l~~l~~L~~L~ls~n~l~~~~p~~~~~l~~L~~L~L~ 154 (678)
+.+-..+|.+|.+|+.+.+..+ ++..-...|.+|.+|+.+.+.
T Consensus 9 t~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 9 VGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEEC
T ss_pred CEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEc
Confidence 3333444555555555555443 222333445555555555554
No 357
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=48.01 E-value=28 Score=27.03 Aligned_cols=45 Identities=16% Similarity=0.136 Sum_probs=22.9
Q ss_pred CCCCCCccCcCCCCCcEEeccCCcceeccCCCCCCCCCCCeEEccc
Q 038612 207 LTGPIPHSLSNASNLIELNLGQNHFTGKVSIDFNGLSDLAWLSFEA 252 (678)
Q Consensus 207 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 252 (678)
++.+-...|.+|++|+.+.+-.+ ++.....+|.++.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 33344445666666666665433 3334444555555555555543
No 358
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=41.71 E-value=11 Score=24.18 Aligned_cols=7 Identities=57% Similarity=1.118 Sum_probs=2.7
Q ss_pred hhheeec
Q 038612 596 VVYARRR 602 (678)
Q Consensus 596 ~~~~~~~ 602 (678)
+++.|||
T Consensus 31 ~~~~RRR 37 (44)
T 2l2t_A 31 AVYVRRK 37 (44)
T ss_dssp HHHHHTT
T ss_pred HHHhhhh
Confidence 3333433
No 359
>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*
Probab=34.91 E-value=23 Score=35.59 Aligned_cols=30 Identities=20% Similarity=0.282 Sum_probs=22.4
Q ss_pred cceeccCCCceEEEEEECCCCeEEEEEEee
Q 038612 636 SNMIGQGSFGIVYKGIFSENGMVVAVKVIN 665 (678)
Q Consensus 636 ~~~iG~G~~G~Vykg~l~~~g~~vAvK~l~ 665 (678)
.+.+|.|.++.||++....+|+.|+||...
T Consensus 35 ~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~ 64 (397)
T 2olc_A 35 CQEIGDGNLNYVFHIYDQEHDRALIIKQAV 64 (397)
T ss_dssp EEECCSSSSEEEEEEEC----CEEEEEEEC
T ss_pred EEECCCCceEEEEEEEECCCCcEEEEEecc
Confidence 457899999999999775445889999874
No 360
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=33.98 E-value=4.2 Score=42.29 Aligned_cols=24 Identities=8% Similarity=0.036 Sum_probs=8.2
Q ss_pred CceEEEEEECCCCeEEEE------EEeecc
Q 038612 644 FGIVYKGIFSENGMVVAV------KVINLN 667 (678)
Q Consensus 644 ~G~Vykg~l~~~g~~vAv------K~l~~~ 667 (678)
||.||+|.+.....+||| |+.+.+
T Consensus 152 fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~ 181 (463)
T 3cxl_A 152 YTTLNREPAYKKHMPVLKETHDERDSTGQD 181 (463)
T ss_dssp BCCC---------CCBGGGC----------
T ss_pred chhhhcccccccCCchhhhhccCccccccc
Confidence 999999999633368999 887653
No 361
>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6
Probab=30.54 E-value=18 Score=33.51 Aligned_cols=27 Identities=19% Similarity=-0.110 Sum_probs=20.4
Q ss_pred ccCCCceEEEEEECCCCeEEEEEEeecc
Q 038612 640 GQGSFGIVYKGIFSENGMVVAVKVINLN 667 (678)
Q Consensus 640 G~G~~G~Vykg~l~~~g~~vAvK~l~~~ 667 (678)
+.|..+.||+....+| ..++||.....
T Consensus 29 ~gg~~~~v~~~~~~~g-~~~vlK~~~~~ 55 (264)
T 1nd4_A 29 IGCSDAAVFRLSAQGR-PVLFVKTDLSG 55 (264)
T ss_dssp CTTSSCEEEEEECTTS-CCEEEEEECSC
T ss_pred cCCCCceEEEEecCCC-CeEEEEeCCcc
Confidence 4555699999988654 78999997543
Done!