BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038614
         (263 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2L1O|A Chain A, Zinc To Cadmium Replacement In The A. Thaliana Superman
           Cys2his2 Zinc Finger Induces Structural Rearrangements
           Of Typical Dna Base Determinant Positions
 pdb|1NJQ|A Chain A, Nmr Structure Of The Single Qalggh Zinc Finger Domain From
           Arabidopsis Thaliana Superman Protein
          Length = 39

 Score = 34.3 bits (77), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 13/25 (52%), Positives = 16/25 (64%)

Query: 200 RVFKCPFCDKVFDSGQALGGHKKIH 224
           R + C FC + F S QALGGH  +H
Sbjct: 5   RSYTCSFCKREFRSAQALGGHMNVH 29



 Score = 32.0 bits (71), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 13/18 (72%), Positives = 14/18 (77%)

Query: 152 YKCKTCKKEFRSYQALGG 169
           Y C  CK+EFRS QALGG
Sbjct: 7   YTCSFCKREFRSAQALGG 24


>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
           Zinc Finger Protein 406
          Length = 36

 Score = 29.3 bits (64), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 200 RVFKCPFCDKVFDSGQALGGHKKIH 224
           ++F C +C+KVF    +L  H +IH
Sbjct: 8   KIFTCEYCNKVFKFKHSLQAHLRIH 32


>pdb|2M0E|A Chain A, Solution Structure Of Miz-1 Zinc Finger 6
          Length = 29

 Score = 28.5 bits (62), Expect = 3.8,   Method: Composition-based stats.
 Identities = 12/22 (54%), Positives = 13/22 (59%)

Query: 203 KCPFCDKVFDSGQALGGHKKIH 224
           KCP CDK F+    L  H KIH
Sbjct: 4   KCPHCDKKFNQVGNLKAHLKIH 25


>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           311- 343) Of Human Zinc Finger Protein 224
          Length = 46

 Score = 27.7 bits (60), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 199 QRVFKCPFCDKVFDSGQALGGHKKIH 224
           ++ F+C  CDK F    AL  H+ IH
Sbjct: 10  EKPFRCDTCDKSFRQRSALNSHRMIH 35


>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
           508- 540) Of Human Zinc Finger Protein 347
          Length = 46

 Score = 27.3 bits (59), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 8/45 (17%)

Query: 199 QRVFKCPFCDKVFDSGQALGGHKKIHFTYLATPITKITSSAKSSG 243
           ++ +KC  C KVF     L  H++IH        T +  S  SSG
Sbjct: 10  EKPYKCNECGKVFTQNSHLANHQRIH--------TGVKPSGPSSG 46


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.129    0.373 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,752,535
Number of Sequences: 62578
Number of extensions: 114185
Number of successful extensions: 404
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 378
Number of HSP's gapped (non-prelim): 27
length of query: 263
length of database: 14,973,337
effective HSP length: 97
effective length of query: 166
effective length of database: 8,903,271
effective search space: 1477942986
effective search space used: 1477942986
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)