BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038615
(274 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 67/121 (55%), Gaps = 3/121 (2%)
Query: 114 SGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIG 173
SG+IP +GSLS L+ L L N L G IP E+ + LE L L N L G IP +
Sbjct: 428 SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG---EIPSGLS 484
Query: 174 NLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSD 233
N NL +SL N+ TG IP +G L +L L LS+N IP E+G+ +L LDL+
Sbjct: 485 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 544
Query: 234 N 234
N
Sbjct: 545 N 545
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 63/109 (57%), Gaps = 4/109 (3%)
Query: 115 GSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGN 174
G P + ++ +L++ +N L+G IP EIG ++ L++ + N +G+IP E+G+
Sbjct: 619 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG---SMPYLFILNLGHNDISGSIPDEVGD 675
Query: 175 LKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNF 223
L+ L L L +NK G IP + LT L +DLS+N L IP E+G F
Sbjct: 676 LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP-EMGQF 723
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 114 SGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIG 173
SG IP +IGS+ L LNL N+++G+IP E+G R L L L SNKL +G IP+ +
Sbjct: 642 SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL---DGRIPQAMS 698
Query: 174 NLKNLTHLSLITNKRTGAIP 193
L LT + L N +G IP
Sbjct: 699 ALTMLTEIDLSNNNLSGPIP 718
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 46/77 (59%)
Query: 162 NGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIG 221
N +G IP+EIG++ L L+L N +G+IP +G L L LDLSSN+L IP +
Sbjct: 639 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 698
Query: 222 NFSALEELDLSDNKIRA 238
+ L E+DLS+N +
Sbjct: 699 ALTMLTEIDLSNNNLSG 715
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 65/126 (51%), Gaps = 6/126 (4%)
Query: 114 SGSIPPQIGSLS-NLKYLNLRWNNLTGTI-PTEIGIFRN-LEELYLPSNKLNGFNGTIPR 170
SG +P + +LS +L L+L NN +G I P +N L+ELYL +N GF G IP
Sbjct: 353 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN---GFTGKIPP 409
Query: 171 EIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELD 230
+ N L L L N +G IPS+LG L+ L L L N L IP E+ LE L
Sbjct: 410 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 469
Query: 231 LSDNKI 236
L N +
Sbjct: 470 LDFNDL 475
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 114 SGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIG 173
+G IP + + +NL +++L N LTG IP IG NL L L +N F+G IP E+G
Sbjct: 476 TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS---FSGNIPAELG 532
Query: 174 NLKNLTHLSLITNKRTGAIPSTL 196
+ ++L L L TN G IP+ +
Sbjct: 533 DCRSLIWLDLNTNLFNGTIPAAM 555
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 72/171 (42%), Gaps = 49/171 (28%)
Query: 114 SGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREI- 172
+G IP IG L NL L L N+ +G IP E+G R+L L L +N FNGTIP +
Sbjct: 500 TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL---FNGTIPAAMF 556
Query: 173 -------------------------------GNL--------KNLTHLSL-----ITNKR 188
GNL + L LS IT++
Sbjct: 557 KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRV 616
Query: 189 TGAIPS-TLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKIRA 238
G S T + S+++LD+S N L +IP EIG+ L L+L N I
Sbjct: 617 YGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG 667
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/110 (35%), Positives = 55/110 (50%), Gaps = 3/110 (2%)
Query: 127 LKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHLSLITN 186
L+ L L+ N TG IP + L L+L N L+G TIP +G+L L L L N
Sbjct: 393 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG---TIPSSLGSLSKLRDLKLWLN 449
Query: 187 KRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKI 236
G IP L ++ +L L L N L IP + N + L + LS+N++
Sbjct: 450 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL 499
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 65/122 (53%), Gaps = 10/122 (8%)
Query: 121 IGSLSNLKYLNLRWNNLTGTIPTEIGIFRN-LEELYLPSNKLNGFNGT---IPREIGNLK 176
+GS S LK+LN+ N L G+ N LE L L +N ++G N + G LK
Sbjct: 119 LGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELK 178
Query: 177 NLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKI 236
HL++ NK +G + + +L +LD+SSN + IP +G+ SAL+ LD+S NK+
Sbjct: 179 ---HLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKL 232
Query: 237 RA 238
Sbjct: 233 SG 234
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 52/100 (52%), Gaps = 6/100 (6%)
Query: 119 PQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNL 178
P +G S L++L++ N L+G I L+ L + SN+ F G IP LK+L
Sbjct: 214 PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ---FVGPIPPLP--LKSL 268
Query: 179 THLSLITNKRTGAIPSTL-GHLTSLLYLDLSSNQLHSFIP 217
+LSL NK TG IP L G +L LDLS N + +P
Sbjct: 269 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 308
Score = 42.0 bits (97), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 63/168 (37%), Gaps = 43/168 (25%)
Query: 114 SGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEI---------------------------- 145
SG+IP ++G +L +L+L N GTIP +
Sbjct: 524 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKE 583
Query: 146 --GIFRNLEELYLPSNKLNG-------------FNGTIPREIGNLKNLTHLSLITNKRTG 190
G LE + S +LN + G N ++ L + N +G
Sbjct: 584 CHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG 643
Query: 191 AIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKIRA 238
IP +G + L L+L N + IP E+G+ L LDLS NK+
Sbjct: 644 YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 691
Score = 36.2 bits (82), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 8/110 (7%)
Query: 127 LKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHLSLITN 186
LK+L + N ++G + ++ NLE L + SN F+ IP +G+ L HL + N
Sbjct: 177 LKHLAISGNKISGDV--DVSRCVNLEFLDVSSNN---FSTGIPF-LGDCSALQHLDISGN 230
Query: 187 KRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKI 236
K +G + T L L++SSNQ IP +L+ L L++NK
Sbjct: 231 KLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKF 278
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 51/121 (42%), Positives = 66/121 (54%), Gaps = 3/121 (2%)
Query: 114 SGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIG 173
SG+IP +GSLS L+ L L N L G IP E+ + LE L L N G IP +
Sbjct: 431 SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL---DFNDLTGEIPSGLS 487
Query: 174 NLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSD 233
N NL +SL N+ TG IP +G L +L L LS+N IP E+G+ +L LDL+
Sbjct: 488 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 547
Query: 234 N 234
N
Sbjct: 548 N 548
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 63/109 (57%), Gaps = 4/109 (3%)
Query: 115 GSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGN 174
G P + ++ +L++ +N L+G IP EIG ++ L++ + N +G+IP E+G+
Sbjct: 622 GHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG---SMPYLFILNLGHNDISGSIPDEVGD 678
Query: 175 LKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNF 223
L+ L L L +NK G IP + LT L +DLS+N L IP E+G F
Sbjct: 679 LRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP-EMGQF 726
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 48/80 (60%), Gaps = 3/80 (3%)
Query: 114 SGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIG 173
SG IP +IGS+ L LNL N+++G+IP E+G R L L L SNKL +G IP+ +
Sbjct: 645 SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL---DGRIPQAMS 701
Query: 174 NLKNLTHLSLITNKRTGAIP 193
L LT + L N +G IP
Sbjct: 702 ALTMLTEIDLSNNNLSGPIP 721
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 46/77 (59%)
Query: 162 NGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIG 221
N +G IP+EIG++ L L+L N +G+IP +G L L LDLSSN+L IP +
Sbjct: 642 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 701
Query: 222 NFSALEELDLSDNKIRA 238
+ L E+DLS+N +
Sbjct: 702 ALTMLTEIDLSNNNLSG 718
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 65/128 (50%), Gaps = 6/128 (4%)
Query: 114 SGSIPPQIGSLS-NLKYLNLRWNNLTGTI-PTEIGIFRN-LEELYLPSNKLNGFNGTIPR 170
SG +P + +LS +L L+L NN +G I P +N L+ELYL +N GF G IP
Sbjct: 356 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN---GFTGKIPP 412
Query: 171 EIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELD 230
+ N L L L N +G IPS+LG L+ L L L N L IP E+ LE L
Sbjct: 413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472
Query: 231 LSDNKIRA 238
L N +
Sbjct: 473 LDFNDLTG 480
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 114 SGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIG 173
+G IP + + +NL +++L N LTG IP IG NL L L +N F+G IP E+G
Sbjct: 479 TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNS---FSGNIPAELG 535
Query: 174 NLKNLTHLSLITNKRTGAIPSTL 196
+ ++L L L TN G IP+ +
Sbjct: 536 DCRSLIWLDLNTNLFNGTIPAAM 558
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/171 (31%), Positives = 72/171 (42%), Gaps = 49/171 (28%)
Query: 114 SGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREI- 172
+G IP IG L NL L L N+ +G IP E+G R+L L L +N FNGTIP +
Sbjct: 503 TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL---FNGTIPAAMF 559
Query: 173 -------------------------------GNL--------KNLTHLSL-----ITNKR 188
GNL + L LS IT++
Sbjct: 560 KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRV 619
Query: 189 TGAIPS-TLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKIRA 238
G S T + S+++LD+S N L +IP EIG+ L L+L N I
Sbjct: 620 YGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG 670
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 55/112 (49%), Gaps = 3/112 (2%)
Query: 127 LKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHLSLITN 186
L+ L L+ N TG IP + L L+L N L+G TIP +G+L L L L N
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG---TIPSSLGSLSKLRDLKLWLN 452
Query: 187 KRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKIRA 238
G IP L ++ +L L L N L IP + N + L + LS+N++
Sbjct: 453 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG 504
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 65/123 (52%), Gaps = 10/123 (8%)
Query: 120 QIGSLSNLKYLNLRWNNLTGTIPTEIGIFRN-LEELYLPSNKLNGFNGT---IPREIGNL 175
+GS S LK+LN+ N L G+ N LE L L +N ++G N + G L
Sbjct: 121 SLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGEL 180
Query: 176 KNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNK 235
K HL++ NK +G + + +L +LD+SSN + IP +G+ SAL+ LD+S NK
Sbjct: 181 K---HLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNK 234
Query: 236 IRA 238
+
Sbjct: 235 LSG 237
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 52/100 (52%), Gaps = 6/100 (6%)
Query: 119 PQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNL 178
P +G S L++L++ N L+G I L+ L + SN+ F G IP LK+L
Sbjct: 217 PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ---FVGPIPPLP--LKSL 271
Query: 179 THLSLITNKRTGAIPSTL-GHLTSLLYLDLSSNQLHSFIP 217
+LSL NK TG IP L G +L LDLS N + +P
Sbjct: 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 63/168 (37%), Gaps = 43/168 (25%)
Query: 114 SGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEI---------------------------- 145
SG+IP ++G +L +L+L N GTIP +
Sbjct: 527 SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKE 586
Query: 146 --GIFRNLEELYLPSNKLNG-------------FNGTIPREIGNLKNLTHLSLITNKRTG 190
G LE + S +LN + G N ++ L + N +G
Sbjct: 587 CHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG 646
Query: 191 AIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKIRA 238
IP +G + L L+L N + IP E+G+ L LDLS NK+
Sbjct: 647 YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 694
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 8/112 (7%)
Query: 127 LKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHLSLITN 186
LK+L + N ++G + ++ NLE L + SN F+ IP +G+ L HL + N
Sbjct: 180 LKHLAISGNKISGDV--DVSRCVNLEFLDVSSNN---FSTGIPF-LGDCSALQHLDISGN 233
Query: 187 KRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKIRA 238
K +G + T L L++SSNQ IP +L+ L L++NK
Sbjct: 234 KLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTG 283
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 84/190 (44%), Gaps = 20/190 (10%)
Query: 61 TSDHCN--WVGITCDYKGSITHIELVECS---------IKGELGSLNFSCFPXXXXXXXX 109
T+D CN W+G+ CD + ++ S I L +L + F
Sbjct: 30 TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNF----LYIGG 85
Query: 110 XXXXSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIP 169
G IPP I L+ L YL + N++G IP + + L L N L +GT+P
Sbjct: 86 INNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL---SGTLP 142
Query: 170 REIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLY-LDLSSNQLHSFIPLEIGNFSALEE 228
I +L NL ++ N+ +GAIP + G + L + +S N+L IP N + L
Sbjct: 143 PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAF 201
Query: 229 LDLSDNKIRA 238
+DLS N +
Sbjct: 202 VDLSRNMLEG 211
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 21/100 (21%)
Query: 114 SGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKL------------ 161
+G IPP +L NL +++L N L G G +N ++++L N L
Sbjct: 187 TGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKN 245
Query: 162 -NGFN-------GTIPREIGNLKNLTHLSLITNKRTGAIP 193
NG + GT+P+ + LK L L++ N G IP
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 61/122 (50%), Gaps = 9/122 (7%)
Query: 121 IGSLSNLKYLNLRWNNLTGTIPTEIGIFR---NLEELYLPSNKLNGFNGTIPREIGNLKN 177
+ L+NL YL L N L ++P G+F NL+EL L N+L + L N
Sbjct: 81 LKELTNLTYLILTGNQLQ-SLPN--GVFDKLTNLKELVLVENQLQSLPDGV---FDKLTN 134
Query: 178 LTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKIR 237
LT+L L N+ LT+L LDL +NQL S + L++L L+DN+++
Sbjct: 135 LTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLK 194
Query: 238 AL 239
++
Sbjct: 195 SV 196
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 60/124 (48%), Gaps = 9/124 (7%)
Query: 121 IGSLSNLKYL-NLRWNNLTGTIPTEIGIFR---NLEELYLPSNKLNGF-NGTIPREIGNL 175
I S+ ++YL N+R+ L G +I + NL L L N+L NG + L
Sbjct: 53 IKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDK----L 108
Query: 176 KNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNK 235
NL L L+ N+ LT+L YL+L+ NQL S + L ELDLS N+
Sbjct: 109 TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ 168
Query: 236 IRAL 239
+++L
Sbjct: 169 LQSL 172
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 60/122 (49%), Gaps = 9/122 (7%)
Query: 121 IGSLSNLKYLNLRWNNLTGTIPTEIGIFR---NLEELYLPSNKLNGFNGTIPREIGNLKN 177
+ L+NL YL L N L ++P G+F NL+EL L N+L + L N
Sbjct: 81 LKELTNLTYLILTGNQLQ-SLPN--GVFDKLTNLKELVLVENQLQSLPDGV---FDKLTN 134
Query: 178 LTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKIR 237
LT+L+L N+ LT+L LDLS NQL S + L++L L N+++
Sbjct: 135 LTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194
Query: 238 AL 239
++
Sbjct: 195 SV 196
Score = 30.8 bits (68), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 46/112 (41%), Gaps = 5/112 (4%)
Query: 124 LSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREI-GNLKNLTHLS 182
L+NLK L L N L NL L L N+L ++P+ + L NLT L
Sbjct: 108 LTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ----SLPKGVFDKLTNLTELD 163
Query: 183 LITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDN 234
L N+ LT L L L NQL S ++L+ + L DN
Sbjct: 164 LSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 56/133 (42%), Gaps = 29/133 (21%)
Query: 124 LSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHLSL 183
L+NL +N N LT P +NL +L N P + NL NLT L+L
Sbjct: 62 LNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 114
Query: 184 ITNKRTGAIP--------------------STLGHLTSLLYLDLSSNQLHSFIPLEIGNF 223
N+ T P S L LTSL L+ SSNQ+ PL N
Sbjct: 115 FNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPL--ANL 172
Query: 224 SALEELDLSDNKI 236
+ LE LD+S NK+
Sbjct: 173 TTLERLDISSNKV 185
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 33/116 (28%)
Query: 121 IGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTH 180
+ L+NL+ L N ++ P +GI NL+EL L N+L ++IG
Sbjct: 191 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL--------KDIG------- 233
Query: 181 LSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKI 236
TL LT+L LDL++NQ+ + PL + L EL L N+I
Sbjct: 234 --------------TLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQI 273
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 55/133 (41%), Gaps = 29/133 (21%)
Query: 124 LSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHLSL 183
L+NL +N N LT P +NL +L N P + NL NLT L+L
Sbjct: 62 LNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 114
Query: 184 ITNKRTGAIP--------------------STLGHLTSLLYLDLSSNQLHSFIPLEIGNF 223
N+ T P S L LTSL L SSNQ+ PL N
Sbjct: 115 FNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPL--ANL 172
Query: 224 SALEELDLSDNKI 236
+ LE LD+S NK+
Sbjct: 173 TTLERLDISSNKV 185
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 33/116 (28%)
Query: 121 IGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTH 180
+ L+NL+ L N ++ P +GI NL+EL L N+L ++IG
Sbjct: 191 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL--------KDIG------- 233
Query: 181 LSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKI 236
TL LT+L LDL++NQ+ + PL + L EL L N+I
Sbjct: 234 --------------TLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQI 273
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 9/87 (10%)
Query: 121 IGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTH 180
I +L NL YL L +NN++ P + L+ L+ +NK++ + NL N+
Sbjct: 301 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVSDV-----SSLANLTNINW 353
Query: 181 LSLITNKRTGAIPSTLGHLTSLLYLDL 207
LS N+ + P L +LT + L L
Sbjct: 354 LSAGHNQISDLTP--LANLTRITQLGL 378
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 61/115 (53%), Gaps = 11/115 (9%)
Query: 129 YLNLRWNNLTGTIPTEIGIFR---NLEELYLPSNKLNGFNGTIPREIGN-LKNLTHLSLI 184
YL+L N+L ++P G+F +L +LYL NKL ++P + N L +LT+L+L
Sbjct: 32 YLDLETNSLK-SLPN--GVFDELTSLTQLYLGGNKLQ----SLPNGVFNKLTSLTYLNLS 84
Query: 185 TNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKIRAL 239
TN+ LT L L L++NQL S + L++L L N+++++
Sbjct: 85 TNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSV 139
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 48/100 (48%), Gaps = 5/100 (5%)
Query: 140 TIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHL 199
++PT GI L L +N L + E L +LT L L NK L
Sbjct: 21 SVPT--GIPAQTTYLDLETNSLKSLPNGVFDE---LTSLTQLYLGGNKLQSLPNGVFNKL 75
Query: 200 TSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKIRAL 239
TSL YL+LS+NQL S + L+EL L+ N++++L
Sbjct: 76 TSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSL 115
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 55/133 (41%), Gaps = 29/133 (21%)
Query: 124 LSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHLSL 183
L+NL +N N LT P +NL +L N P + NL NLT L+L
Sbjct: 62 LNNLTQINFSNNQLTDITP-----LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 114
Query: 184 ITNKRTGAIP--------------------STLGHLTSLLYLDLSSNQLHSFIPLEIGNF 223
N+ T P S L LTSL L SSNQ+ PL N
Sbjct: 115 FNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVTDLKPL--ANL 172
Query: 224 SALEELDLSDNKI 236
+ LE LD+S NK+
Sbjct: 173 TTLERLDISSNKV 185
Score = 35.8 bits (81), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 33/116 (28%)
Query: 121 IGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTH 180
+ L+NL+ L N ++ P +GI NL+EL L N+L ++IG
Sbjct: 191 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL--------KDIG------- 233
Query: 181 LSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKI 236
TL LT+L LDL++NQ+ + PL + L EL L N+I
Sbjct: 234 --------------TLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQI 273
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 41.2 bits (95), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 46/95 (48%), Gaps = 13/95 (13%)
Query: 121 IGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGN-----L 175
G L +L L L+ N LTG P +++EL L NK+ +EI N L
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI--------KEISNKMFLGL 101
Query: 176 KNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSN 210
L L+L N+ + +P + HL SL L+L+SN
Sbjct: 102 HQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 32.0 bits (71), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Query: 168 IPREIGNLKNLTHLSLITNKRTGAIPST--LGHLTSLLYLDLSSNQLHSFIPLEIGNFSA 225
IPR+I + T L L+ + G I S G L L+ L+L NQL P S
Sbjct: 23 IPRDIP--LHTTEL-LLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79
Query: 226 LEELDLSDNKIRAL 239
++EL L +NKI+ +
Sbjct: 80 IQELQLGENKIKEI 93
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 53/121 (43%), Gaps = 10/121 (8%)
Query: 122 GSLSNLKYLNLRW--NNLTGTIPTEIGIFR---NLEELYLPSNKLNGFNGTIPREIGNLK 176
G LK L W +N +P IG+F NL EL L N+L PR +L
Sbjct: 79 GIFKELKNLETLWVTDNKLQALP--IGVFDQLVNLAELRLDRNQLKSL---PPRVFDSLT 133
Query: 177 NLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKI 236
LT+LSL N+ LTSL L L +NQL + L+ L L +N++
Sbjct: 134 KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193
Query: 237 R 237
+
Sbjct: 194 K 194
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 57/125 (45%), Gaps = 7/125 (5%)
Query: 116 SIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNL 175
+IP I + + K L+L+ N L+ L LYL NKL I +E+ NL
Sbjct: 30 AIPSNIPA--DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNL 87
Query: 176 KNLTHLSLITNKRTGAIP-STLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDN 234
+ L +T+ + A+P L +L L L NQL S P + + L L L N
Sbjct: 88 ETL----WVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143
Query: 235 KIRAL 239
++++L
Sbjct: 144 ELQSL 148
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 49/117 (41%), Gaps = 31/117 (26%)
Query: 116 SIPPQI-GSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGN 174
S+PP++ SL+ L YL+L +N L ++P G+F
Sbjct: 123 SLPPRVFDSLTKLTYLSLGYNELQ-SLPK--GVF------------------------DK 155
Query: 175 LKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDL 231
L +L L L N+ LT L L L +NQL +P G F +LE+L +
Sbjct: 156 LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR-VP--EGAFDSLEKLKM 209
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/126 (30%), Positives = 60/126 (47%), Gaps = 8/126 (6%)
Query: 115 GSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREI-G 173
S+P I + N + L L N +T P NL+ELYL SN+L G +P +
Sbjct: 32 ASVPAGIPT--NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL----GALPVGVFD 85
Query: 174 NLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSD 233
+L LT L L TN+ T + L L L + N+L + +P I + L L L
Sbjct: 86 SLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQ 144
Query: 234 NKIRAL 239
N+++++
Sbjct: 145 NQLKSI 150
Score = 37.0 bits (84), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
Query: 115 GSIPPQI-GSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIG 173
G++P + SL+ L L+L N LT +L+EL++ NKL +PR I
Sbjct: 77 GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT----ELPRGIE 132
Query: 174 NLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSN 210
L +LTHL+L N+ L+SL + L N
Sbjct: 133 RLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 116 SIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNL 175
+P +I +LSNL+ L+L N LT ++P E+G L+ Y N + T+P E GNL
Sbjct: 261 ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT----TLPWEFGNL 315
Query: 176 KNLTHLSLITN 186
NL L + N
Sbjct: 316 CNLQFLGVEGN 326
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 116 SIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKL 161
S+P ++GS LKY ++N+ T+P E G NL+ L + N L
Sbjct: 284 SLPAELGSCFQLKYFYF-FDNMVTTLPWEFGNLCNLQFLGVEGNPL 328
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 36.2 bits (82), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 60/132 (45%), Gaps = 20/132 (15%)
Query: 116 SIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNL 175
SIP G + +K L+L +N +T ++ NL+ L L S+++N G +G+L
Sbjct: 45 SIPS--GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSL 102
Query: 176 KNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLH-----SFIP-------LEIGN- 222
+ HL L N + S G L+SL YL+L N S P L IGN
Sbjct: 103 E---HLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNV 159
Query: 223 --FSALEELDLS 232
FS + +D +
Sbjct: 160 ETFSEIRRIDFA 171
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 196 LGHLTSLLYLDLSSNQLHSF-IPLEIGNFSALEELDLSDNKIRAL 239
+GHL +L L+++ N + SF +P N + LE LDLS NKI+++
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
Score = 30.8 bits (68), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 172 IGNLKNLTHLSLITNK-RTGAIPSTLGHLTSLLYLDLSSNQLHS 214
IG+LK L L++ N ++ +P +LT+L +LDLSSN++ S
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 196 LGHLTSLLYLDLSSNQLHSF-IPLEIGNFSALEELDLSDNKIRAL 239
+GHL +L L+++ N + SF +P N + LE LDLS NKI+++
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166
Score = 30.8 bits (68), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 172 IGNLKNLTHLSLITNK-RTGAIPSTLGHLTSLLYLDLSSNQLHS 214
IG+LK L L++ N ++ +P +LT+L +LDLSSN++ S
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 35.8 bits (81), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 60/132 (45%), Gaps = 20/132 (15%)
Query: 116 SIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNL 175
SIP G + +K L+L +N +T ++ NL+ L L S+++N G +G+L
Sbjct: 19 SIPS--GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSL 76
Query: 176 KNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLH-----SFIP-------LEIGN- 222
+ HL L N + S G L+SL YL+L N S P L IGN
Sbjct: 77 E---HLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNV 133
Query: 223 --FSALEELDLS 232
FS + +D +
Sbjct: 134 ETFSEIRRIDFA 145
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 196 LGHLTSLLYLDLSSNQLHSF-IPLEIGNFSALEELDLSDNKIRAL 239
+GHL +L L+++ N + SF +P N + LE LDLS NKI+++
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 165
Score = 30.8 bits (68), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 172 IGNLKNLTHLSLITNK-RTGAIPSTLGHLTSLLYLDLSSNQLHS 214
IG+LK L L++ N ++ +P +LT+L +LDLSSN++ S
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 35.8 bits (81), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 196 LGHLTSLLYLDLSSNQLHSF-IPLEIGNFSALEELDLSDNKIRAL 239
+GHL +L L+++ N + SF +P N + LE LDLS NKI+++
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 166
Score = 30.8 bits (68), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 172 IGNLKNLTHLSLITNK-RTGAIPSTLGHLTSLLYLDLSSNQLHS 214
IG+LK L L++ N ++ +P +LT+L +LDLSSN++ S
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 5/118 (4%)
Query: 118 PPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIP-REIGNLK 176
P L+ L+YL L+ N L NL L+L N+++ ++P R L
Sbjct: 121 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS----SVPERAFRGLH 176
Query: 177 NLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDN 234
+L L L N+ P L L+ L L +N L + + AL+ L L+DN
Sbjct: 177 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 49/125 (39%), Gaps = 9/125 (7%)
Query: 118 PPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNL---EELYLPSNKLNGFNGTIPREIGN 174
P L L L+L L P G+FR L + LYL N L R++G
Sbjct: 97 PATFHGLGRLHTLHLDRCGLQELGP---GLFRGLAALQYLYLQDNALQALPDDTFRDLG- 152
Query: 175 LKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDN 234
NLTHL L N+ + L SL L L N++ P + L L L N
Sbjct: 153 --NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 210
Query: 235 KIRAL 239
+ AL
Sbjct: 211 NLSAL 215
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 196 LGHLTSLLYLDLSSNQLHSF-IPLEIGNFSALEELDLSDNKIRAL 239
+GHL +L L+++ N + SF +P N + LE LDLS NKI+++
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
Score = 30.8 bits (68), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 172 IGNLKNLTHLSLITNK-RTGAIPSTLGHLTSLLYLDLSSNQLHS 214
IG+LK L L++ N ++ +P +LT+L +LDLSSN++ S
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 35.8 bits (81), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 33/116 (28%)
Query: 121 IGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTH 180
+ L+NL+ L N ++ P +GI NL+EL L N+L ++IG
Sbjct: 190 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL--------KDIG------- 232
Query: 181 LSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKI 236
TL LT+L LDL++NQ+ + PL + L EL L N+I
Sbjct: 233 --------------TLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQI 272
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 11/90 (12%)
Query: 148 FRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHL-SLITNKRTGAIPSTLGHLTSLLYLD 206
NL ++ +N+L +I LKNLT L ++ N A + L +LT+L L
Sbjct: 62 LNNLTQINFSNNQL--------TDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLT 113
Query: 207 LSSNQLHSFIPLEIGNFSALEELDLSDNKI 236
L +NQ+ PL+ N + L L+LS N I
Sbjct: 114 LFNNQITDIDPLK--NLTNLNRLELSSNTI 141
Score = 27.7 bits (60), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 9/87 (10%)
Query: 121 IGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTH 180
I +L NL YL L +NN++ P + L+ L+ +NK++ + NL N+
Sbjct: 300 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVSDV-----SSLANLTNINW 352
Query: 181 LSLITNKRTGAIPSTLGHLTSLLYLDL 207
LS N+ + P L +LT + L L
Sbjct: 353 LSAGHNQISDLTP--LANLTRITQLGL 377
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 35.8 bits (81), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 50/118 (42%), Gaps = 5/118 (4%)
Query: 118 PPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIP-REIGNLK 176
P L+ L+YL L+ N L NL L+L N+++ ++P R L
Sbjct: 122 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS----SVPERAFRGLH 177
Query: 177 NLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDN 234
+L L L N+ P L L+ L L +N L + + AL+ L L+DN
Sbjct: 178 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
Score = 33.5 bits (75), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 49/125 (39%), Gaps = 9/125 (7%)
Query: 118 PPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNL---EELYLPSNKLNGFNGTIPREIGN 174
P L L L+L L P G+FR L + LYL N L R++G
Sbjct: 98 PATFHGLGRLHTLHLDRCGLQELGP---GLFRGLAALQYLYLQDNALQALPDDTFRDLG- 153
Query: 175 LKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDN 234
NLTHL L N+ + L SL L L N++ P + L L L N
Sbjct: 154 --NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211
Query: 235 KIRAL 239
+ AL
Sbjct: 212 NLSAL 216
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 35.4 bits (80), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 33/116 (28%)
Query: 121 IGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTH 180
+ L+NL+ L N ++ P +GI NL+EL L N+L ++IG
Sbjct: 190 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL--------KDIG------- 232
Query: 181 LSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKI 236
TL LT+L LDL++NQ+ + PL + L EL L N+I
Sbjct: 233 --------------TLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQI 272
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 11/90 (12%)
Query: 148 FRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHL-SLITNKRTGAIPSTLGHLTSLLYLD 206
NL ++ +N+L +I LKNLT L ++ N A + L +LT+L L
Sbjct: 62 LNNLTQINFSNNQL--------TDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLT 113
Query: 207 LSSNQLHSFIPLEIGNFSALEELDLSDNKI 236
L +NQ+ PL+ N + L L+LS N I
Sbjct: 114 LFNNQITDIDPLK--NLTNLNRLELSSNTI 141
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 35.4 bits (80), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 33/116 (28%)
Query: 121 IGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTH 180
+ L+NL+ L N ++ P +GI NL+EL L N+L ++IG
Sbjct: 194 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL--------KDIG------- 236
Query: 181 LSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKI 236
TL LT+L LDL++NQ+ + PL + L EL L N+I
Sbjct: 237 --------------TLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQI 276
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 11/90 (12%)
Query: 148 FRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHL-SLITNKRTGAIPSTLGHLTSLLYLD 206
NL ++ +N+L +I LKNLT L ++ N A + L +LT+L L
Sbjct: 66 LNNLTQINFSNNQL--------TDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLT 117
Query: 207 LSSNQLHSFIPLEIGNFSALEELDLSDNKI 236
L +NQ+ PL+ N + L L+LS N I
Sbjct: 118 LFNNQITDIDPLK--NLTNLNRLELSSNTI 145
Score = 27.7 bits (60), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 9/87 (10%)
Query: 121 IGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTH 180
I +L NL YL L +NN++ P + L+ L+ +NK++ + NL N+
Sbjct: 304 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSDV-----SSLANLTNINW 356
Query: 181 LSLITNKRTGAIPSTLGHLTSLLYLDL 207
LS N+ + P L +LT + L L
Sbjct: 357 LSAGHNQISDLTP--LANLTRITQLGL 381
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 35.4 bits (80), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 33/116 (28%)
Query: 121 IGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTH 180
+ L+NL+ L N ++ P +GI NL+EL L N+L ++IG
Sbjct: 195 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQL--------KDIG------- 237
Query: 181 LSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKI 236
TL LT+L LDL++NQ+ + PL + L EL L N+I
Sbjct: 238 --------------TLASLTNLTDLDLANNQISNLAPL--SGLTKLTELKLGANQI 277
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 11/90 (12%)
Query: 148 FRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHL-SLITNKRTGAIPSTLGHLTSLLYLD 206
NL ++ +N+L +I LKNLT L ++ N A + L +LT+L L
Sbjct: 67 LNNLTQINFSNNQL--------TDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLT 118
Query: 207 LSSNQLHSFIPLEIGNFSALEELDLSDNKI 236
L +NQ+ PL+ N + L L+LS N I
Sbjct: 119 LFNNQITDIDPLK--NLTNLNRLELSSNTI 146
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 35.0 bits (79), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 196 LGHLTSLLYLDLSSNQLHSF-IPLEIGNFSALEELDLSDNKIRAL 239
+GHL +L L+++ N + SF +P N + LE LDLS NKI+++
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
Score = 33.9 bits (76), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 43/93 (46%), Gaps = 4/93 (4%)
Query: 123 SLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGT-IPREIGNLKNLTHL 181
SL NL YL++ T T GIF L L + N F +P L+NLT L
Sbjct: 419 SLRNLIYLDISH---THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475
Query: 182 SLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHS 214
L + P+ L+SL L+++SNQL S
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS 508
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 172 IGNLKNLTHLSLITNK-RTGAIPSTLGHLTSLLYLDLSSNQLHS 214
IG+LK L L++ N ++ +P +LT+L +LDLSSN++ S
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 35.0 bits (79), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 60/119 (50%), Gaps = 14/119 (11%)
Query: 121 IGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTH 180
I L+NL+YLNL N +T P + L LY+ +NK+ +I L+NLT+
Sbjct: 62 IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI--------TDISALQNLTN 111
Query: 181 L-SLITNKRTGAIPSTLGHLTSLLYLDLSSNQ-LHSFIPLEIGNFSALEELDLSDNKIR 237
L L N+ + S L +LT L+L +N L PL N + L L ++++K++
Sbjct: 112 LRELYLNEDNISDISPLANLTKXYSLNLGANHNLSDLSPL--SNXTGLNYLTVTESKVK 168
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 35.0 bits (79), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 196 LGHLTSLLYLDLSSNQLHSF-IPLEIGNFSALEELDLSDNKIRAL 239
+GHL +L L+++ N + SF +P N + LE LDLS NKI+++
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 172 IGNLKNLTHLSLITNK-RTGAIPSTLGHLTSLLYLDLSSNQLHS 214
IG+LK L L++ N ++ +P +LT+L +LDLSSN++ S
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 35.0 bits (79), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Query: 196 LGHLTSLLYLDLSSNQLHSF-IPLEIGNFSALEELDLSDNKIRAL 239
+GHL +L L+++ N + SF +P N + LE LDLS NKI+++
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188
Score = 30.4 bits (67), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 172 IGNLKNLTHLSLITNK-RTGAIPSTLGHLTSLLYLDLSSNQLHS 214
IG+LK L L++ N ++ +P +LT+L +LDLSSN++ S
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 34.3 bits (77), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 31/63 (49%)
Query: 177 NLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKI 236
+L L+L N+ + LT LL L+LS N L S N LE LDLS N I
Sbjct: 300 DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI 359
Query: 237 RAL 239
RAL
Sbjct: 360 RAL 362
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 34.3 bits (77), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 118 PPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKN 177
P SL+ L YLNL N LT +P +G+F L +L + +N NLK+
Sbjct: 57 PGVFDSLTQLTYLNLAVNQLTA-LP--VGVFDKLTKLTHLALHINQLKSIPMGVFDNLKS 113
Query: 178 LTHLSLITN 186
LTH+ L N
Sbjct: 114 LTHIYLFNN 122
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 146 GIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYL 205
GI + L+L N++ P +L LT+L+L N+ T LT L +L
Sbjct: 37 GIPTTTQVLHLYINQITKLE---PGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHL 93
Query: 206 DLSSNQLHSFIPLEI-GNFSALEELDLSDN 234
L NQL S IP+ + N +L + L +N
Sbjct: 94 ALHINQLKS-IPMGVFDNLKSLTHIYLFNN 122
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 166 GTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSA 225
++P I + HL + N+ T P LT L YL+L+ NQL + L +G F
Sbjct: 32 ASVPAGIPTTTQVLHLYI--NQITKLEPGVFDSLTQLTYLNLAVNQLTA---LPVGVFDK 86
Query: 226 LEEL 229
L +L
Sbjct: 87 LTKL 90
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 33.9 bits (76), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 55/136 (40%), Gaps = 29/136 (21%)
Query: 121 IGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTH 180
I L+NL L L+ N +T P + + EL L N L + I L+++
Sbjct: 65 IQYLNNLIGLELKDNQITDLTP--LKNLTKITELELSGNPLKNVSA-----IAGLQSIKT 117
Query: 181 LSLITNKRTGAIP--------------------STLGHLTSLLYLDLSSNQLHSFIPLEI 220
L L + + T P S L LT+L YL + +NQ++ PL
Sbjct: 118 LDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNNQVNDLTPL-- 175
Query: 221 GNFSALEELDLSDNKI 236
N S L L DNKI
Sbjct: 176 ANLSKLTTLRADDNKI 191
Score = 27.3 bits (59), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 198 HLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKIR 237
+L +L+ L+L NQ+ PL+ N + + EL+LS N ++
Sbjct: 67 YLNNLIGLELKDNQITDLTPLK--NLTKITELELSGNPLK 104
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 33.9 bits (76), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 79/188 (42%), Gaps = 10/188 (5%)
Query: 57 IPHNTSD--HCNWVGITCDYKGSITHIELVECSIKGELGSLNFSCFPXXXXXXXXXXXXS 114
+ H +D H + D +IT + L ++ L + NF+ + S
Sbjct: 4 VSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTIS 62
Query: 115 GSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGF-NGTIPREIG 173
P L LK LNL+ N L+ NL EL+L SN + N ++
Sbjct: 63 KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ-- 120
Query: 174 NLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNF--SALEELDL 231
KNL L L N + T L +L L LS+N++ + E+ F S+L++L+L
Sbjct: 121 --KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 178
Query: 232 SDNKIRAL 239
S N+I+
Sbjct: 179 SSNQIKEF 186
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 79/188 (42%), Gaps = 10/188 (5%)
Query: 57 IPHNTSD--HCNWVGITCDYKGSITHIELVECSIKGELGSLNFSCFPXXXXXXXXXXXXS 114
+ H +D H + D +IT + L ++ L + NF+ + S
Sbjct: 14 VSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTIS 72
Query: 115 GSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGF-NGTIPREIG 173
P L LK LNL+ N L+ NL EL+L SN + N ++
Sbjct: 73 KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ-- 130
Query: 174 NLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNF--SALEELDL 231
KNL L L N + T L +L L LS+N++ + E+ F S+L++L+L
Sbjct: 131 --KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 188
Query: 232 SDNKIRAL 239
S N+I+
Sbjct: 189 SSNQIKEF 196
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 79/188 (42%), Gaps = 10/188 (5%)
Query: 57 IPHNTSD--HCNWVGITCDYKGSITHIELVECSIKGELGSLNFSCFPXXXXXXXXXXXXS 114
+ H +D H + D +IT + L ++ L + NF+ + S
Sbjct: 9 VSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTIS 67
Query: 115 GSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGF-NGTIPREIG 173
P L LK LNL+ N L+ NL EL+L SN + N ++
Sbjct: 68 KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ-- 125
Query: 174 NLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNF--SALEELDL 231
KNL L L N + T L +L L LS+N++ + E+ F S+L++L+L
Sbjct: 126 --KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 183
Query: 232 SDNKIRAL 239
S N+I+
Sbjct: 184 SSNQIKEF 191
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 5/100 (5%)
Query: 140 TIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHL 199
++PT GI + L L SNKL + L LT LSL N+ L
Sbjct: 21 SVPT--GIPSSATRLELESNKLQSLPHGV---FDKLTQLTKLSLSQNQIQSLPDGVFDKL 75
Query: 200 TSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKIRAL 239
T L L L N+L S + L+EL L N+++++
Sbjct: 76 TKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSV 115
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 11/72 (15%)
Query: 169 PREIGNLKNL----THLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFS 224
P + NL +L HL+ I+++ +P+ L YLDLSSN LH+ +
Sbjct: 60 PTRLTNLHSLLLSHNHLNFISSEAFVPVPN-------LRYLDLSSNHLHTLDEFLFSDLQ 112
Query: 225 ALEELDLSDNKI 236
ALE L L +N I
Sbjct: 113 ALEVLLLYNNHI 124
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 33.1 bits (74), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 181 LSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKIRAL 239
L L N+ T P LT L LDL +NQL + L +L L+DN+++++
Sbjct: 35 LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSI 93
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 28/115 (24%)
Query: 146 GIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYL 205
GI R++ ELYL N+ +P+E+ N K+LT + L N+ + + ++T LL L
Sbjct: 28 GIPRDVTELYLDGNQFT----LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTL 83
Query: 206 DLSSNQLHSFIPL------------------------EIGNFSALEELDLSDNKI 236
LS N+L P + SAL L + N +
Sbjct: 84 ILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 33.1 bits (74), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 9/104 (8%)
Query: 131 NLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTG 190
N+R ++ IPT+ + L+L +N++ P +L NL L +NK T
Sbjct: 21 NIRLASVPAGIPTD------KQRLWLNNNQITKLE---PGVFDHLVNLQQLYFNSNKLTA 71
Query: 191 AIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDN 234
LT L LDL+ N L S N +L + L +N
Sbjct: 72 IPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
Score = 30.0 bits (66), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 181 LSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKIRAL 239
L L N+ T P HL +L L +SN+L + + L +LDL+DN ++++
Sbjct: 38 LWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSI 96
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 33.1 bits (74), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 5/110 (4%)
Query: 128 KYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHLSLITNK 187
+ L+L N + E F +LEEL L N ++ P NL NL L L +N
Sbjct: 35 RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVE---PGAFNNLFNLRTLGLRSN- 90
Query: 188 RTGAIP-STLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKI 236
R IP L++L LD+S N++ + + L+ L++ DN +
Sbjct: 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL 140
Score = 30.8 bits (68), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 183 LITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKIRAL 239
L KR A+P + T LL DL N++ + E +F LEEL+L++N + A+
Sbjct: 17 LCHRKRFVAVPEGIPTETRLL--DLGKNRIKTLNQDEFASFPHLEELELNENIVSAV 71
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 44/96 (45%), Gaps = 9/96 (9%)
Query: 89 KGELGSLN---FSCFPXXXXXXXXXXXXSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEI 145
K + +LN F+ FP S P +L NL+ L LR N L IP +
Sbjct: 41 KNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIP--L 97
Query: 146 GIF---RNLEELYLPSNKLNGFNGTIPREIGNLKNL 178
G+F NL +L + NK+ + +++ NLK+L
Sbjct: 98 GVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSL 133
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 7/107 (6%)
Query: 123 SLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHLS 182
+L NL L L N ++ P LE LYL N+L +P+ + L+ H +
Sbjct: 74 NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELR--VHEN 131
Query: 183 LITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEEL 229
IT R S L ++ ++L +N L S +E G F +++L
Sbjct: 132 EITKVRK----SVFNGLNQMIVVELGTNPLKSS-GIENGAFQGMKKL 173
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 171 EIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELD 230
+ NLKNL L LI NK + P L L L LS NQL +P ++ L+EL
Sbjct: 71 DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKMP--KTLQELR 127
Query: 231 LSDNKI 236
+ +N+I
Sbjct: 128 VHENEI 133
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 7/116 (6%)
Query: 124 LSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHLSL 183
+ L Y+ + N+T TIP G+ +L EL+L NK+ + + L NL L L
Sbjct: 170 MKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAA---SLKGLNNLAKLGL 223
Query: 184 ITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKIRAL 239
N + +L + L L L++N+L +P + + ++ + L +N I A+
Sbjct: 224 SFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAI 278
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 32.7 bits (73), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 10/84 (11%)
Query: 135 NNLTGTIPTEIGIFR---NLEELYLPSNKLNGF-NGTIPREIGNLKNLTHLSLITNKRTG 190
NN ++P +G+F L++LYL N+L +G R L L L L TN+
Sbjct: 92 NNQLASLP--LGVFDHLTQLDKLYLGGNQLKSLPSGVFDR----LTKLKELRLNTNQLQS 145
Query: 191 AIPSTLGHLTSLLYLDLSSNQLHS 214
LT+L L LS+NQL S
Sbjct: 146 IPAGAFDKLTNLQTLSLSTNQLQS 169
Score = 29.3 bits (64), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 29/117 (24%)
Query: 124 LSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHLSL 183
L+ L +LNL +N L G+F +L EL GT+
Sbjct: 58 LTKLTWLNLDYNQLQ---TLSAGVFDDLTEL-----------GTLG-------------- 89
Query: 184 ITNKRTGAIP-STLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKIRAL 239
+ N + ++P HLT L L L NQL S + L+EL L+ N+++++
Sbjct: 90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI 146
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 32.7 bits (73), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 7/107 (6%)
Query: 123 SLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHLS 182
+L NL L L N ++ P LE LYL N+L +P+ + L+ H +
Sbjct: 74 NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELR--VHEN 131
Query: 183 LITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEEL 229
IT R S L ++ ++L +N L S +E G F +++L
Sbjct: 132 EITKVRK----SVFNGLNQMIVVELGTNPLKSS-GIENGAFQGMKKL 173
Score = 32.0 bits (71), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 171 EIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELD 230
+ NLKNL L LI NK + P L L L LS NQL +P ++ L+EL
Sbjct: 71 DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEKMP--KTLQELR 127
Query: 231 LSDNKI 236
+ +N+I
Sbjct: 128 VHENEI 133
Score = 28.9 bits (63), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 7/116 (6%)
Query: 124 LSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHLSL 183
+ L Y+ + N+T TIP G+ +L EL+L NK+ + + L NL L L
Sbjct: 170 MKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKVDAA---SLKGLNNLAKLGL 223
Query: 184 ITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKIRAL 239
N + +L + L L L++N+L +P + + ++ + L +N I A+
Sbjct: 224 SFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAI 278
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 32.7 bits (73), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 10/84 (11%)
Query: 135 NNLTGTIPTEIGIFR---NLEELYLPSNKLNGF-NGTIPREIGNLKNLTHLSLITNKRTG 190
NN ++P +G+F L++LYL N+L +G R L L L L TN+
Sbjct: 92 NNQLASLP--LGVFDHLTQLDKLYLGGNQLKSLPSGVFDR----LTKLKELRLNTNQLQS 145
Query: 191 AIPSTLGHLTSLLYLDLSSNQLHS 214
LT+L L LS+NQL S
Sbjct: 146 IPAGAFDKLTNLQTLSLSTNQLQS 169
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 29/117 (24%)
Query: 124 LSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHLSL 183
L+ L +LNL +N L G+F +L EL GT+
Sbjct: 58 LTKLTWLNLDYNQLQ---TLSAGVFDDLTEL-----------GTLG-------------- 89
Query: 184 ITNKRTGAIP-STLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKIRAL 239
+ N + ++P HLT L L L NQL S + L+EL L+ N+++++
Sbjct: 90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI 146
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 7/119 (5%)
Query: 121 IGSLSNLKYLNLRWNNLT-GTIPTE--IGIFRNLEELYLPSNKLNGFNGTIPREIGNLKN 177
+ L +L++LNL+ N+ G+I + + +LE L L S L + + L+N
Sbjct: 444 LAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSID---QQAFHGLRN 500
Query: 178 LTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKI 236
+ HL L N TG L HL LYL+++SN + P + S ++LS N +
Sbjct: 501 VNHLDLSHNSLTGDSMDALSHLKG-LYLNMASNNIRIIPPHLLPALSQQSIINLSHNPL 558
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 32.7 bits (73), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 181 LSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKIRAL 239
L L N+ T P LT L LDL +NQL + L +L L+DN+++++
Sbjct: 35 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSI 93
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 32.3 bits (72), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%)
Query: 181 LSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKIRAL 239
L L N+ T P LT L LDL +NQL + L +L L+DN+++++
Sbjct: 43 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSI 101
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 31.6 bits (70), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 51/119 (42%), Gaps = 7/119 (5%)
Query: 118 PPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPRE-IGNLK 176
P L+ L+YL L+ NNL NL L+L N++ ++P L
Sbjct: 121 PGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIP----SVPEHAFRGLH 176
Query: 177 NLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEI-GNFSALEELDLSDN 234
+L L L N P L L+ L L +N L S +P E+ +L+ L L+DN
Sbjct: 177 SLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNL-SMLPAEVLVPLRSLQYLRLNDN 234
Score = 31.6 bits (70), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 39/92 (42%), Gaps = 4/92 (4%)
Query: 149 RNLEELYLPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAI-PSTLGHLTSLLYLDL 207
RNL L+L SN L G + L L L L N + + P+T L L L L
Sbjct: 55 RNLTILWLHSNALAGIDAA---AFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHL 111
Query: 208 SSNQLHSFIPLEIGNFSALEELDLSDNKIRAL 239
L P +AL+ L L DN ++AL
Sbjct: 112 DRCGLQELGPGLFRGLAALQYLYLQDNNLQAL 143
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 42/101 (41%), Gaps = 14/101 (13%)
Query: 146 GIFRNL---EELYLPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGH---- 198
G+FR L + LYL N L R++GNL THL L N+ IPS H
Sbjct: 122 GLFRGLAALQYLYLQDNNLQALPDNTFRDLGNL---THLFLHGNR----IPSVPEHAFRG 174
Query: 199 LTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKIRAL 239
L SL L L N + P + L L L N + L
Sbjct: 175 LHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSML 215
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 8/107 (7%)
Query: 124 LSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHLSL 183
LSNL+YLNL NL IP + + L+EL L N L+ P L +L L +
Sbjct: 184 LSNLRYLNLAMCNLR-EIPNLTPLIK-LDELDLSGNHLSAIR---PGSFQGLMHLQKLWM 238
Query: 184 ITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELD 230
I ++ + +L SL+ ++L+ N L + +P ++ F+ L L+
Sbjct: 239 IQSQIQVIERNAFDNLQSLVEINLAHNNL-TLLPHDL--FTPLHHLE 282
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 30.0 bits (66), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 45/108 (41%), Gaps = 5/108 (4%)
Query: 124 LSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHLSL 183
L NL+ L L W + ++P I +NL+ L + ++ L+ I +L L L L
Sbjct: 182 LVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAI----HHLPKLEELDL 236
Query: 184 ITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDL 231
P G L L L +PL+I + LE+LDL
Sbjct: 237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 180 HLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLH--SFIPLEIGNFSALEELDLSDNKI 236
HL N T + GHLT L L L NQL S I +L++LD+S N +
Sbjct: 328 HLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSV 386
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 186 NKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDN 234
N R +IP + HL +L L+++SNQL S ++L+ + L DN
Sbjct: 459 NNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 14/85 (16%)
Query: 130 LNLRWNNLTGTI----PTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHLSLIT 185
LNL N LTG++ P ++ + L L +N++ +IP+++ +L+ L L++ +
Sbjct: 433 LNLSSNMLTGSVFRCLPPKVKV------LDLHNNRI----MSIPKDVTHLQALQELNVAS 482
Query: 186 NKRTGAIPSTLGHLTSLLYLDLSSN 210
N+ LTSL Y+ L N
Sbjct: 483 NQLKSVPDGVFDRLTSLQYIWLHDN 507
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 29.3 bits (64), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 48/122 (39%), Gaps = 14/122 (11%)
Query: 119 PQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSN-----KLNGFNGTIPREIG 173
PQ G SN +YLNL NN+ +LE L L N ++ FNG
Sbjct: 70 PQ-GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNG------- 121
Query: 174 NLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSD 233
L +L L L N T +L+ L L L +N + S +L LDL +
Sbjct: 122 -LASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGE 180
Query: 234 NK 235
K
Sbjct: 181 LK 182
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 121 IGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTH 180
I L NL LNL N +T P I N+ +L+L NKL + + NLKNL
Sbjct: 62 IQYLPNLTSLNLSNNQITDISP--IQYLPNVTKLFLNGNKLTDI-----KPLANLKNLGW 114
Query: 181 LSLITNK 187
L L NK
Sbjct: 115 LFLDENK 121
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 28.1 bits (61), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 198 HLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKIR 237
+L +L+ L+L NQ+ PL+ N + + EL+LS N ++
Sbjct: 61 YLNNLIGLELKDNQITDLAPLK--NLTKITELELSGNPLK 98
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 54/132 (40%), Gaps = 23/132 (17%)
Query: 127 LKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNG--------------------FNG 166
++ LNL+ + + T F L+EL L + L G F+
Sbjct: 253 VESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKGLPSGMKGLNLLKKLVLSVNHFDQ 312
Query: 167 TIPREIGNLKNLTHLSLITN-KRTGAIPSTLGHLTSLLYLDLSSNQLHSF--IPLEIGNF 223
N +LTHL + N K+ L L +L LDLS N + + L++ N
Sbjct: 313 LCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNL 372
Query: 224 SALEELDLSDNK 235
S L+ L+LS N+
Sbjct: 373 SHLQTLNLSHNE 384
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 27.7 bits (60), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 46/114 (40%), Gaps = 3/114 (2%)
Query: 125 SNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHLSLI 184
SN+ LNL N L PT F +L + N + P L L L+L
Sbjct: 25 SNITVLNLTHNQLRRLPPTN---FTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQ 81
Query: 185 TNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKIRA 238
N+ + T T+L LDL SN +H N L +LDLS N + +
Sbjct: 82 HNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSS 135
>pdb|2NYA|A Chain A, Crystal Structure Of The Periplasmic Nitrate Reductase
(Nap) From Escherichia Coli
pdb|2NYA|F Chain F, Crystal Structure Of The Periplasmic Nitrate Reductase
(Nap) From Escherichia Coli
Length = 792
Score = 27.3 bits (59), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 124 LSNLKYLNL---RWNNLTGTIPTEIGIFRNLEELYLPSNKLNGF 164
++N K+ ++ +WN +GTIP +IG+ ++ L KLN +
Sbjct: 397 VTNEKHRDICEKKWNIPSGTIPAKIGLHAVAQDRALKDGKLNVY 440
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 27.3 bits (59), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 36/81 (44%), Gaps = 9/81 (11%)
Query: 159 NKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPL 218
N ++ NG + +L L L L NK T + L LT L L L NQ+ +PL
Sbjct: 119 NGISDINGLV-----HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPL 171
Query: 219 EIGNFSALEELDLSDNKIRAL 239
+ L+ L LS N I L
Sbjct: 172 --AGLTKLQNLYLSKNHISDL 190
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,413,769
Number of Sequences: 62578
Number of extensions: 279324
Number of successful extensions: 953
Number of sequences better than 100.0: 79
Number of HSP's better than 100.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 603
Number of HSP's gapped (non-prelim): 270
length of query: 274
length of database: 14,973,337
effective HSP length: 97
effective length of query: 177
effective length of database: 8,903,271
effective search space: 1575878967
effective search space used: 1575878967
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)