Query 038615
Match_columns 274
No_of_seqs 352 out of 2755
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 12:50:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038615.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038615hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 9.7E-30 2.1E-34 250.7 19.5 201 31-238 25-226 (968)
2 PLN00113 leucine-rich repeat r 99.9 1.5E-21 3.2E-26 192.8 11.7 155 77-237 119-273 (968)
3 KOG0617 Ras suppressor protein 99.8 2E-21 4.4E-26 148.3 -4.3 161 75-243 32-192 (264)
4 PLN03150 hypothetical protein; 99.7 7.5E-17 1.6E-21 151.4 13.3 154 29-191 366-530 (623)
5 KOG4194 Membrane glycoprotein 99.7 4.8E-18 1E-22 151.0 3.5 187 75-262 124-355 (873)
6 KOG4194 Membrane glycoprotein 99.7 1.6E-18 3.5E-23 154.0 0.0 161 76-240 173-357 (873)
7 KOG0617 Ras suppressor protein 99.7 3.2E-18 7E-23 130.8 -3.5 161 97-265 29-190 (264)
8 KOG4237 Extracellular matrix p 99.6 1.3E-16 2.9E-21 135.9 -0.2 185 76-261 67-359 (498)
9 KOG0444 Cytoskeletal regulator 99.6 2.2E-16 4.8E-21 141.8 -0.3 158 76-239 103-283 (1255)
10 KOG0444 Cytoskeletal regulator 99.5 5.4E-16 1.2E-20 139.3 -2.1 155 77-239 33-188 (1255)
11 PRK15370 E3 ubiquitin-protein 99.5 2.1E-13 4.6E-18 129.5 14.4 214 28-264 56-362 (754)
12 KOG0472 Leucine-rich repeat pr 99.5 1.6E-16 3.5E-21 135.8 -7.3 172 78-262 139-311 (565)
13 PRK15370 E3 ubiquitin-protein 99.5 7.9E-14 1.7E-18 132.4 9.9 172 77-265 200-405 (754)
14 KOG0472 Leucine-rich repeat pr 99.5 5.2E-15 1.1E-19 126.7 -1.2 152 77-237 389-541 (565)
15 cd00116 LRR_RI Leucine-rich re 99.4 1.7E-14 3.6E-19 125.2 0.5 188 75-263 80-293 (319)
16 cd00116 LRR_RI Leucine-rich re 99.4 1E-14 2.2E-19 126.5 -0.9 163 76-239 108-293 (319)
17 PRK15387 E3 ubiquitin-protein 99.4 9.9E-13 2.1E-17 124.6 11.8 77 77-163 223-316 (788)
18 PRK15387 E3 ubiquitin-protein 99.4 4.4E-12 9.4E-17 120.3 15.1 163 76-264 242-438 (788)
19 PLN03150 hypothetical protein; 99.4 9.9E-13 2.1E-17 123.8 9.9 118 150-270 419-538 (623)
20 PLN03210 Resistant to P. syrin 99.4 3.1E-12 6.8E-17 128.3 13.7 80 77-159 612-691 (1153)
21 PLN03210 Resistant to P. syrin 99.3 9.9E-12 2.1E-16 124.7 13.6 82 76-160 634-715 (1153)
22 KOG0618 Serine/threonine phosp 99.3 8.1E-14 1.7E-18 130.0 -1.6 128 101-235 359-487 (1081)
23 KOG0532 Leucine-rich repeat (L 99.3 8E-14 1.7E-18 124.0 -3.1 146 83-240 105-250 (722)
24 COG4886 Leucine-rich repeat (L 99.3 3.6E-12 7.8E-17 114.1 5.2 177 76-264 116-293 (394)
25 KOG0618 Serine/threonine phosp 99.3 4E-13 8.6E-18 125.5 -1.5 176 76-259 310-487 (1081)
26 KOG0532 Leucine-rich repeat (L 99.3 1E-13 2.2E-18 123.4 -5.7 180 77-270 76-255 (722)
27 PF14580 LRR_9: Leucine-rich r 99.2 1.7E-11 3.6E-16 96.5 5.5 127 97-231 15-147 (175)
28 KOG4237 Extracellular matrix p 99.2 1.8E-12 4E-17 110.9 -0.0 164 101-264 67-338 (498)
29 PF14580 LRR_9: Leucine-rich r 99.2 2.2E-11 4.8E-16 95.8 5.2 124 77-208 20-148 (175)
30 COG4886 Leucine-rich repeat (L 99.1 5.9E-11 1.3E-15 106.2 3.8 153 77-240 141-293 (394)
31 KOG1259 Nischarin, modulator o 99.0 1.4E-11 3E-16 102.5 -2.0 134 100-242 283-417 (490)
32 KOG1259 Nischarin, modulator o 99.0 2.4E-11 5.1E-16 101.1 -1.7 129 77-215 285-414 (490)
33 KOG3207 Beta-tubulin folding c 99.0 8.2E-11 1.8E-15 102.1 -0.8 162 77-242 147-319 (505)
34 PF13855 LRR_8: Leucine rich r 98.9 4.3E-10 9.3E-15 73.1 2.5 61 176-236 1-61 (61)
35 KOG3207 Beta-tubulin folding c 98.9 1.6E-10 3.5E-15 100.3 -0.4 173 67-241 161-343 (505)
36 PF13855 LRR_8: Leucine rich r 98.9 1.5E-09 3.3E-14 70.4 3.2 59 102-160 2-60 (61)
37 KOG0531 Protein phosphatase 1, 98.8 4.6E-10 9.9E-15 101.2 -0.9 126 78-214 74-200 (414)
38 KOG1909 Ran GTPase-activating 98.7 4E-09 8.6E-14 89.4 0.8 185 76-260 92-310 (382)
39 KOG1859 Leucine-rich repeat pr 98.7 7.8E-10 1.7E-14 101.6 -3.8 130 126-264 165-295 (1096)
40 KOG0531 Protein phosphatase 1, 98.7 3.4E-09 7.4E-14 95.5 -0.3 158 98-267 69-227 (414)
41 PF08263 LRRNT_2: Leucine rich 98.6 3.7E-08 7.9E-13 59.0 3.7 40 34-73 2-43 (43)
42 KOG1859 Leucine-rich repeat pr 98.6 6.8E-10 1.5E-14 102.0 -7.0 127 77-213 165-292 (1096)
43 KOG1909 Ran GTPase-activating 98.5 4.7E-08 1E-12 83.0 2.0 166 96-261 87-283 (382)
44 KOG4658 Apoptotic ATPase [Sign 98.4 1.9E-07 4.2E-12 90.7 5.1 148 77-231 524-675 (889)
45 KOG2982 Uncharacterized conser 98.4 1.2E-07 2.7E-12 79.1 1.5 161 77-238 72-263 (418)
46 PF12799 LRR_4: Leucine Rich r 98.4 6E-07 1.3E-11 53.9 4.0 41 200-241 1-41 (44)
47 KOG4579 Leucine-rich repeat (L 98.3 2.3E-08 5.1E-13 74.2 -4.4 105 78-189 29-136 (177)
48 KOG1644 U2-associated snRNP A' 98.3 1.4E-06 3.1E-11 68.9 5.2 105 101-209 42-149 (233)
49 KOG4658 Apoptotic ATPase [Sign 98.2 1.6E-06 3.4E-11 84.5 5.3 133 97-235 519-653 (889)
50 PF12799 LRR_4: Leucine Rich r 98.2 2.4E-06 5.3E-11 51.2 3.4 36 126-162 2-37 (44)
51 KOG3665 ZYG-1-like serine/thre 98.1 1.5E-06 3.2E-11 82.6 2.4 135 101-240 122-266 (699)
52 KOG4579 Leucine-rich repeat (L 98.1 3.9E-07 8.5E-12 67.8 -1.4 85 75-162 52-136 (177)
53 COG5238 RNA1 Ran GTPase-activa 97.9 8.6E-06 1.9E-10 67.5 3.5 140 96-238 87-256 (388)
54 COG5238 RNA1 Ran GTPase-activa 97.9 9.9E-06 2.1E-10 67.1 3.8 163 76-239 30-229 (388)
55 KOG2120 SCF ubiquitin ligase, 97.9 3.3E-07 7.2E-12 76.6 -5.1 156 76-234 185-373 (419)
56 PRK15386 type III secretion pr 97.9 5.5E-05 1.2E-09 67.1 8.1 133 76-235 52-188 (426)
57 PRK15386 type III secretion pr 97.8 0.0001 2.2E-09 65.4 9.0 136 97-258 48-187 (426)
58 KOG2120 SCF ubiquitin ligase, 97.8 2.5E-07 5.3E-12 77.4 -7.0 156 77-235 160-349 (419)
59 KOG1644 U2-associated snRNP A' 97.8 2.6E-05 5.7E-10 61.9 4.6 109 77-188 43-152 (233)
60 KOG3665 ZYG-1-like serine/thre 97.7 7.7E-06 1.7E-10 77.8 -0.4 151 76-230 122-281 (699)
61 KOG2982 Uncharacterized conser 97.7 6.2E-06 1.4E-10 69.1 -1.0 108 101-211 45-157 (418)
62 KOG2739 Leucine-rich acidic nu 97.7 2.3E-05 5E-10 64.5 2.1 106 98-207 40-150 (260)
63 KOG2739 Leucine-rich acidic nu 97.6 3.2E-05 6.9E-10 63.7 2.6 111 117-230 35-149 (260)
64 KOG2123 Uncharacterized conser 97.2 1.1E-05 2.5E-10 67.0 -4.6 99 102-206 20-123 (388)
65 PF13306 LRR_5: Leucine rich r 97.2 0.0013 2.7E-08 48.9 6.6 122 96-226 7-128 (129)
66 KOG2123 Uncharacterized conser 97.0 5E-05 1.1E-09 63.3 -3.0 100 124-230 18-123 (388)
67 PF13306 LRR_5: Leucine rich r 96.4 0.017 3.6E-07 42.7 7.1 117 77-203 13-129 (129)
68 PF00560 LRR_1: Leucine Rich R 95.8 0.0044 9.5E-08 31.0 0.9 18 127-145 2-19 (22)
69 PF00560 LRR_1: Leucine Rich R 95.6 0.0039 8.4E-08 31.2 0.4 12 202-213 2-13 (22)
70 PF13504 LRR_7: Leucine rich r 94.6 0.024 5.3E-07 26.3 1.5 15 225-239 2-16 (17)
71 KOG0473 Leucine-rich repeat pr 94.2 0.0011 2.4E-08 54.0 -6.0 84 75-162 41-124 (326)
72 KOG4308 LRR-containing protein 93.4 0.00064 1.4E-08 62.2 -9.9 83 78-161 89-184 (478)
73 KOG4308 LRR-containing protein 93.4 0.00074 1.6E-08 61.8 -9.5 163 76-239 115-305 (478)
74 KOG1947 Leucine rich repeat pr 92.1 0.074 1.6E-06 48.5 1.5 111 100-212 187-307 (482)
75 KOG0473 Leucine-rich repeat pr 91.0 0.0044 9.5E-08 50.7 -6.7 93 91-189 32-124 (326)
76 KOG1947 Leucine rich repeat pr 90.9 0.044 9.5E-07 50.0 -1.2 114 124-237 187-308 (482)
77 smart00370 LRR Leucine-rich re 90.4 0.25 5.4E-06 25.4 1.9 19 223-241 1-19 (26)
78 smart00369 LRR_TYP Leucine-ric 90.4 0.25 5.4E-06 25.4 1.9 19 223-241 1-19 (26)
79 smart00369 LRR_TYP Leucine-ric 89.6 0.34 7.5E-06 24.9 2.1 16 200-215 2-17 (26)
80 smart00370 LRR Leucine-rich re 89.6 0.34 7.5E-06 24.9 2.1 16 200-215 2-17 (26)
81 KOG4341 F-box protein containi 87.9 0.21 4.5E-06 44.4 0.8 136 99-235 292-437 (483)
82 PF13516 LRR_6: Leucine Rich r 87.8 0.25 5.4E-06 24.9 0.7 17 223-239 1-17 (24)
83 smart00365 LRR_SD22 Leucine-ri 86.8 0.63 1.4E-05 24.2 1.9 17 224-240 2-18 (26)
84 KOG3864 Uncharacterized conser 84.6 0.17 3.8E-06 40.5 -1.3 83 125-209 101-185 (221)
85 KOG3864 Uncharacterized conser 82.3 0.22 4.7E-06 40.0 -1.5 82 102-186 102-186 (221)
86 smart00368 LRR_RI Leucine rich 79.5 1.5 3.3E-05 23.0 1.6 15 224-238 2-16 (28)
87 smart00364 LRR_BAC Leucine-ric 78.3 1.4 3.1E-05 22.8 1.2 18 224-241 2-19 (26)
88 KOG3763 mRNA export factor TAP 77.4 1.1 2.4E-05 41.3 1.1 67 147-214 216-284 (585)
89 KOG3763 mRNA export factor TAP 69.3 2 4.4E-05 39.7 0.8 37 99-135 216-254 (585)
90 KOG4341 F-box protein containi 50.5 10 0.00022 34.2 1.7 154 77-230 295-458 (483)
91 TIGR00864 PCC polycystin catio 44.8 16 0.00035 40.6 2.5 33 182-214 1-33 (2740)
92 PF07172 GRP: Glycine rich pro 42.7 19 0.00042 25.2 1.9 6 10-15 4-9 (95)
93 smart00367 LRR_CC Leucine-rich 39.8 20 0.00043 18.1 1.2 16 223-238 1-17 (26)
94 PTZ00459 mucin-associated surf 34.9 26 0.00057 30.1 1.9 21 3-23 1-21 (291)
95 TIGR00864 PCC polycystin catio 26.2 48 0.001 37.2 2.4 32 155-189 1-32 (2740)
96 KOG1665 AFH1-interacting prote 21.6 1.1E+02 0.0025 25.2 3.2 11 229-239 261-271 (302)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.97 E-value=9.7e-30 Score=250.69 Aligned_cols=201 Identities=37% Similarity=0.521 Sum_probs=133.6
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccceeeeCCCCCEEEEEecCCCcccccCccccCCCCCccEEEccC
Q 038615 31 TNISIHVAASEIERQALLNGGWWKDRIPHNTSDHCNWVGITCDYKGSITHIELVECSIKGELGSLNFSCFPNLQYLNLWN 110 (274)
Q Consensus 31 ~~~~~~~~~l~~~~~~l~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~ 110 (274)
..++.|+.|+.++|+++.++. ....+|+...++|.|.||+|+..++|+.|+++++++.|.++. .+..+++|+.|++++
T Consensus 25 ~~~~~~~~~l~~~~~~~~~~~-~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~-~~~~l~~L~~L~Ls~ 102 (968)
T PLN00113 25 MLHAEELELLLSFKSSINDPL-KYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISS-AIFRLPYIQTINLSN 102 (968)
T ss_pred CCCHHHHHHHHHHHHhCCCCc-ccCCCCCCCCCCCcCcceecCCCCcEEEEEecCCCccccCCh-HHhCCCCCCEEECCC
Confidence 345579999999999997665 567899888899999999998778999999999999988877 888999999999999
Q ss_pred CCCCCCCCccCC-CCCCCCeeeccCCcCCCccchhccCCCCCcEEECCCCCCCCCcCCCchhccCCcccceeecccccCC
Q 038615 111 NNLSGSIPPQIG-SLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRT 189 (274)
Q Consensus 111 n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~ 189 (274)
|.+.+.+|..+. .+++|++|++++|.+++.+|. +.+++|++|++++|.+ .+.+|..++++++|++|++++|.+.
T Consensus 103 n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~---~~~~p~~~~~l~~L~~L~L~~n~l~ 177 (968)
T PLN00113 103 NQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNML---SGEIPNDIGSFSSLKVLDLGGNVLV 177 (968)
T ss_pred CccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcc---cccCChHHhcCCCCCEEECccCccc
Confidence 999887776644 667777777777766655443 2344555555555544 3344444444444444444444444
Q ss_pred CCCchhhcCCCCCCeeecccCcCCCCCchhccCCCCCCEEEccCCccCc
Q 038615 190 GAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKIRA 238 (274)
Q Consensus 190 ~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 238 (274)
+.+|..+.++++|++|++++|.+++.+|..++++++|++|++++|++++
T Consensus 178 ~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 226 (968)
T PLN00113 178 GKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSG 226 (968)
T ss_pred ccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCC
Confidence 4444444444444444444444444444444444444444444444443
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.86 E-value=1.5e-21 Score=192.80 Aligned_cols=155 Identities=43% Similarity=0.607 Sum_probs=75.2
Q ss_pred CEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEEC
Q 038615 77 SITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYL 156 (274)
Q Consensus 77 ~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 156 (274)
+++.|++++|++.+.+|. +.+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..++++++|++|++
T Consensus 119 ~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 195 (968)
T PLN00113 119 SLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL 195 (968)
T ss_pred CCCEEECcCCccccccCc---cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeec
Confidence 566666666666554443 23445555555555554444544555555555555555554444444445555555555
Q ss_pred CCCCCCCCcCCCchhccCCcccceeecccccCCCCCchhhcCCCCCCeeecccCcCCCCCchhccCCCCCCEEEccCCcc
Q 038615 157 PSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKI 236 (274)
Q Consensus 157 ~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l 236 (274)
++|.+ .+.+|..+.++++|++|++++|.+.+.+|..++++++|++|++++|.+++.+|..++++++|++|++++|++
T Consensus 196 ~~n~l---~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 272 (968)
T PLN00113 196 ASNQL---VGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKL 272 (968)
T ss_pred cCCCC---cCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCee
Confidence 55444 333444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred C
Q 038615 237 R 237 (274)
Q Consensus 237 ~ 237 (274)
+
T Consensus 273 ~ 273 (968)
T PLN00113 273 S 273 (968)
T ss_pred e
Confidence 3
No 3
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.79 E-value=2e-21 Score=148.26 Aligned_cols=161 Identities=34% Similarity=0.506 Sum_probs=148.5
Q ss_pred CCCEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEE
Q 038615 75 KGSITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEEL 154 (274)
Q Consensus 75 ~~~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 154 (274)
..+++.|.+++|.++ .+|+ .++.+.+|+.|++.+|+++ .+|..++.+++|+.|+++.|++. .+|..|+.++.|+.|
T Consensus 32 ~s~ITrLtLSHNKl~-~vpp-nia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPP-NIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred hhhhhhhhcccCcee-ecCC-cHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 457899999999998 7888 8999999999999999998 78999999999999999999998 889999999999999
Q ss_pred ECCCCCCCCCcCCCchhccCCcccceeecccccCCCCCchhhcCCCCCCeeecccCcCCCCCchhccCCCCCCEEEccCC
Q 038615 155 YLPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDN 234 (274)
Q Consensus 155 ~L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N 234 (274)
|+.+|++. ...+|..|..+..|+.|++++|.+. .+|..++++++|+.|.+.+|.+-. +|..++.++.|++|++++|
T Consensus 108 dltynnl~--e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~-lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 108 DLTYNNLN--ENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLS-LPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hccccccc--cccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhh-CcHHHHHHHHHHHHhcccc
Confidence 99999997 4578999999999999999999987 678889999999999999999875 7999999999999999999
Q ss_pred ccCcccccC
Q 038615 235 KIRALQIIQ 243 (274)
Q Consensus 235 ~l~~~~~~~ 243 (274)
+++-.++..
T Consensus 184 rl~vlppel 192 (264)
T KOG0617|consen 184 RLTVLPPEL 192 (264)
T ss_pred eeeecChhh
Confidence 998776643
No 4
>PLN03150 hypothetical protein; Provisional
Probab=99.71 E-value=7.5e-17 Score=151.44 Aligned_cols=154 Identities=27% Similarity=0.465 Sum_probs=126.3
Q ss_pred ccCCChhHHHHHHHHHHHhcCCCCCCCCCCCCCCCCc-----ccceeeeCC---C--CCEEEEEecCCCcccccCccccC
Q 038615 29 SATNISIHVAASEIERQALLNGGWWKDRIPHNTSDHC-----NWVGITCDY---K--GSITHIELVECSIKGELGSLNFS 98 (274)
Q Consensus 29 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~w~~~~~~c-----~w~gv~c~~---~--~~l~~L~l~~~~l~~~l~~~~l~ 98 (274)
.+.+.+.|..|+..+|+.+..+. ..+|. +++| .|.||.|.. . ..++.|+|+++++.|.+|. .+.
T Consensus 366 ~~~t~~~~~~aL~~~k~~~~~~~---~~~W~--g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~-~i~ 439 (623)
T PLN03150 366 ESKTLLEEVSALQTLKSSLGLPL---RFGWN--GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPN-DIS 439 (623)
T ss_pred ccccCchHHHHHHHHHHhcCCcc---cCCCC--CCCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCH-HHh
Confidence 34556678999999999986543 23685 4667 699999952 1 2488999999999998988 899
Q ss_pred CCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEECCCCCCCCCcCCCchhccCC-cc
Q 038615 99 CFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNL-KN 177 (274)
Q Consensus 99 ~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~lp~~l~~l-~~ 177 (274)
.+++|+.|++++|.+.|.+|..+..+++|+.|+|++|.++|.+|+.++.+++|++|++++|++ .|.+|..+... .+
T Consensus 440 ~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l---~g~iP~~l~~~~~~ 516 (623)
T PLN03150 440 KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSL---SGRVPAALGGRLLH 516 (623)
T ss_pred CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcc---cccCChHHhhcccc
Confidence 999999999999999999998899999999999999999999999999999999999999988 67888877653 45
Q ss_pred cceeecccccCCCC
Q 038615 178 LTHLSLITNKRTGA 191 (274)
Q Consensus 178 L~~L~l~~n~l~~~ 191 (274)
+..+++.+|.....
T Consensus 517 ~~~l~~~~N~~lc~ 530 (623)
T PLN03150 517 RASFNFTDNAGLCG 530 (623)
T ss_pred CceEEecCCccccC
Confidence 67788888765443
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.70 E-value=4.8e-18 Score=151.00 Aligned_cols=187 Identities=27% Similarity=0.280 Sum_probs=103.1
Q ss_pred CCCEEEEEecCCCcccccCccccCCCCCccEEEccCCCCC------------------------CCCCccCCCCCCCCee
Q 038615 75 KGSITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLS------------------------GSIPPQIGSLSNLKYL 130 (274)
Q Consensus 75 ~~~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~------------------------~~~p~~l~~l~~L~~L 130 (274)
.|+++.|+|.+|-++ .+....+..++.|+.|||+.|.++ ..-...|..+.+|.+|
T Consensus 124 sghl~~L~L~~N~I~-sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tl 202 (873)
T KOG4194|consen 124 SGHLEKLDLRHNLIS-SVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTL 202 (873)
T ss_pred ccceeEEeeeccccc-cccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheee
Confidence 467888888888776 232224444555555555555544 3333344455555555
Q ss_pred eccCCcCCCccchhccCCCCCcEEECCCCCCCCCcCCC----c-----------------hhccCCcccceeecccccCC
Q 038615 131 NLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTI----P-----------------REIGNLKNLTHLSLITNKRT 189 (274)
Q Consensus 131 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~l----p-----------------~~l~~l~~L~~L~l~~n~l~ 189 (274)
.|+.|+++...+..|.++++|+.|+|..|++....|.- | ..|..+.++++|+|..|++.
T Consensus 203 kLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~ 282 (873)
T KOG4194|consen 203 KLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ 282 (873)
T ss_pred ecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh
Confidence 55555555333344555666666666666664322210 0 01122334444444444444
Q ss_pred CCCchhhcCCCCCCeeecccCcCCCCCchhccCCCCCCEEEccCCccCcccccCccccccccCCccCCccccC
Q 038615 190 GAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKIRALQIIQPSISQSFIKPTFRPNTFCN 262 (274)
Q Consensus 190 ~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (274)
..-...+.++++|++|++|+|.|....++.+.-.++|++|+|++|+|+..++..+.....+..+.++.|++..
T Consensus 283 ~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~ 355 (873)
T KOG4194|consen 283 AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDH 355 (873)
T ss_pred hhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHH
Confidence 3333445556666677777777666666666666777777777777776665555555555566666665543
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.70 E-value=1.6e-18 Score=153.97 Aligned_cols=161 Identities=26% Similarity=0.275 Sum_probs=88.0
Q ss_pred CCEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCC--------------------
Q 038615 76 GSITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWN-------------------- 135 (274)
Q Consensus 76 ~~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n-------------------- 135 (274)
.++++|+|++|.++ .+....|..+.+|..|.|+.|.++...+..|..+++|+.|+|..|
T Consensus 173 ~ni~~L~La~N~It-~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlk 251 (873)
T KOG4194|consen 173 VNIKKLNLASNRIT-TLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLK 251 (873)
T ss_pred CCceEEeecccccc-ccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhh
Confidence 35666666666665 332224444445555555555544322233333444444444444
Q ss_pred ----cCCCccchhccCCCCCcEEECCCCCCCCCcCCCchhccCCcccceeecccccCCCCCchhhcCCCCCCeeecccCc
Q 038615 136 ----NLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQ 211 (274)
Q Consensus 136 ----~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~ 211 (274)
.+...-...|..+.++++|+|+.|+++.++ ..++.+++.|++|+++.|.+....++.+...++|+.|+|++|+
T Consensus 252 lqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn---~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~ 328 (873)
T KOG4194|consen 252 LQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVN---EGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNR 328 (873)
T ss_pred hhhcCcccccCcceeeecccceeecccchhhhhh---cccccccchhhhhccchhhhheeecchhhhcccceeEeccccc
Confidence 443223334556666777777777765433 2345666777777777777766666666666677777777777
Q ss_pred CCCCCchhccCCCCCCEEEccCCccCccc
Q 038615 212 LHSFIPLEIGNFSALEELDLSDNKIRALQ 240 (274)
Q Consensus 212 l~~~~p~~l~~l~~L~~L~l~~N~l~~~~ 240 (274)
|+...+..|..+..|++|.|+.|.++.+.
T Consensus 329 i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~ 357 (873)
T KOG4194|consen 329 ITRLDEGSFRVLSQLEELNLSHNSIDHLA 357 (873)
T ss_pred cccCChhHHHHHHHhhhhcccccchHHHH
Confidence 66655555554444444444444444433
No 7
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.65 E-value=3.2e-18 Score=130.81 Aligned_cols=161 Identities=28% Similarity=0.416 Sum_probs=140.3
Q ss_pred cCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEECCCCCCCCCcCCCchhccCCc
Q 038615 97 FSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLK 176 (274)
Q Consensus 97 l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~lp~~l~~l~ 176 (274)
+..+.+++.|.+++|.++ .+|+.++.+.+|+.|++.+|+++ .+|..++.+++|+.|+++-|++. .+|.+|+.+|
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~----~lprgfgs~p 102 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN----ILPRGFGSFP 102 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh----cCccccCCCc
Confidence 556788999999999998 68889999999999999999999 88999999999999999999984 6799999999
Q ss_pred ccceeecccccCCC-CCchhhcCCCCCCeeecccCcCCCCCchhccCCCCCCEEEccCCccCcccccCccccccccCCcc
Q 038615 177 NLTHLSLITNKRTG-AIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKIRALQIIQPSISQSFIKPTF 255 (274)
Q Consensus 177 ~L~~L~l~~n~l~~-~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~ 255 (274)
.|+.|++..|++.. .+|..|..+..|+.|.+++|.+.- +|..++++++|+.|.+..|.+-..+.... -...++.+.+
T Consensus 103 ~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~-lp~dvg~lt~lqil~lrdndll~lpkeig-~lt~lrelhi 180 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEI-LPPDVGKLTNLQILSLRDNDLLSLPKEIG-DLTRLRELHI 180 (264)
T ss_pred hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCccc-CChhhhhhcceeEEeeccCchhhCcHHHH-HHHHHHHHhc
Confidence 99999999999875 578888888999999999999974 78899999999999999999877654332 2334566778
Q ss_pred CCccccCCCC
Q 038615 256 RPNTFCNWKT 265 (274)
Q Consensus 256 ~~~~~~~~~~ 265 (274)
++|++.-+|+
T Consensus 181 qgnrl~vlpp 190 (264)
T KOG0617|consen 181 QGNRLTVLPP 190 (264)
T ss_pred ccceeeecCh
Confidence 9999887765
No 8
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.59 E-value=1.3e-16 Score=135.92 Aligned_cols=185 Identities=25% Similarity=0.241 Sum_probs=118.3
Q ss_pred CCEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccC-CcCCCccchhccCCCCCcEE
Q 038615 76 GSITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRW-NNLTGTIPTEIGIFRNLEEL 154 (274)
Q Consensus 76 ~~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L 154 (274)
...++|+|..|+++ .+|+..|..+++|+.|||++|.|+..-|..|..+++|..|.+.+ |+|+..-...|+++..|+.|
T Consensus 67 ~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 67 PETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred CcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 36889999999999 78877999999999999999999988899999999987776655 88883322334444444444
Q ss_pred ECCCCCC------------------------CCCcC--------------------------------------------
Q 038615 155 YLPSNKL------------------------NGFNG-------------------------------------------- 166 (274)
Q Consensus 155 ~L~~n~l------------------------~~~~~-------------------------------------------- 166 (274)
.+.-|++ +.+.+
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc 225 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC 225 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence 4433333 11110
Q ss_pred --------------------------------------CCc-hhccCCcccceeecccccCCCCCchhhcCCCCCCeeec
Q 038615 167 --------------------------------------TIP-REIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDL 207 (274)
Q Consensus 167 --------------------------------------~lp-~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~l 207 (274)
..| ..|..+++|+.|++++|.+++.-+.+|.....++.|.|
T Consensus 226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L 305 (498)
T KOG4237|consen 226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL 305 (498)
T ss_pred cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence 000 01233445555555555555555555555555555555
Q ss_pred ccCcCCCCCchhccCCCCCCEEEccCCccCcccccCccccccccCCccCCcccc
Q 038615 208 SSNQLHSFIPLEIGNFSALEELDLSDNKIRALQIIQPSISQSFIKPTFRPNTFC 261 (274)
Q Consensus 208 s~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (274)
..|++...-...|..+..|++|+|++|+|+-+.+..+....++..+.+-.|.|+
T Consensus 306 ~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 306 TRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred CcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence 555554433445566677777777777777766665555566666655555543
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.58 E-value=2.2e-16 Score=141.77 Aligned_cols=158 Identities=32% Similarity=0.494 Sum_probs=81.0
Q ss_pred CCEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCcc-CCCCCCCCeeeccCCcCCCccchhccCCCCCcEE
Q 038615 76 GSITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQ-IGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEEL 154 (274)
Q Consensus 76 ~~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 154 (274)
..++.|+|+.|++. ++|. .+..-.++-+|+|++|+|. .+|.. +-++..|-+|||++|++. .+|+.+..+.+|++|
T Consensus 103 ~dLt~lDLShNqL~-EvP~-~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL 178 (1255)
T KOG0444|consen 103 KDLTILDLSHNQLR-EVPT-NLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTL 178 (1255)
T ss_pred ccceeeecchhhhh-hcch-hhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhh
Confidence 35666666666666 5555 5555666666666666665 34432 345566666666666665 556666666666666
Q ss_pred ECCCCCCCCC----------------------cCCCchhccCCcccceeecccccCCCCCchhhcCCCCCCeeecccCcC
Q 038615 155 YLPSNKLNGF----------------------NGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQL 212 (274)
Q Consensus 155 ~L~~n~l~~~----------------------~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l 212 (274)
+|++|.+..+ -..+|..+..+.+|..++++.|.+. .+|+.+.++++|+.|+||+|+|
T Consensus 179 ~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~i 257 (1255)
T KOG0444|consen 179 KLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKI 257 (1255)
T ss_pred hcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCce
Confidence 6666654210 0123333334444444444444443 3344444444444444444444
Q ss_pred CCCCchhccCCCCCCEEEccCCccCcc
Q 038615 213 HSFIPLEIGNFSALEELDLSDNKIRAL 239 (274)
Q Consensus 213 ~~~~p~~l~~l~~L~~L~l~~N~l~~~ 239 (274)
+. +....+.+.+|++|+++.|+++..
T Consensus 258 te-L~~~~~~W~~lEtLNlSrNQLt~L 283 (1255)
T KOG0444|consen 258 TE-LNMTEGEWENLETLNLSRNQLTVL 283 (1255)
T ss_pred ee-eeccHHHHhhhhhhccccchhccc
Confidence 43 122233344444444444444443
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.53 E-value=5.4e-16 Score=139.27 Aligned_cols=155 Identities=31% Similarity=0.439 Sum_probs=74.6
Q ss_pred CEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCC-ccchhccCCCCCcEEE
Q 038615 77 SITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTG-TIPTEIGIFRNLEELY 155 (274)
Q Consensus 77 ~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~ 155 (274)
+++.|.|...++. .+|. .++.+..|++|.+.+|++. .+...++.++.|+.+++..|++.. -+|..+-.+..|..||
T Consensus 33 ~~~WLkLnrt~L~-~vPe-EL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lD 109 (1255)
T KOG0444|consen 33 QMTWLKLNRTKLE-QVPE-ELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILD 109 (1255)
T ss_pred heeEEEechhhhh-hChH-HHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeee
Confidence 3444444444333 3444 4444444444444444443 233334444455555555444432 1344444555555555
Q ss_pred CCCCCCCCCcCCCchhccCCcccceeecccccCCCCCchhhcCCCCCCeeecccCcCCCCCchhccCCCCCCEEEccCCc
Q 038615 156 LPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNK 235 (274)
Q Consensus 156 L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N~ 235 (274)
|++|+++ .+|..+...+++..|+|++|++.......+-+++.|-.||||+|.+.. +|..+..+..|++|+|++|+
T Consensus 110 LShNqL~----EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~-LPPQ~RRL~~LqtL~Ls~NP 184 (1255)
T KOG0444|consen 110 LSHNQLR----EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEM-LPPQIRRLSMLQTLKLSNNP 184 (1255)
T ss_pred cchhhhh----hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhh-cCHHHHHHhhhhhhhcCCCh
Confidence 5555553 344455555555555555555543222233445555555555555543 34445555555566666655
Q ss_pred cCcc
Q 038615 236 IRAL 239 (274)
Q Consensus 236 l~~~ 239 (274)
+...
T Consensus 185 L~hf 188 (1255)
T KOG0444|consen 185 LNHF 188 (1255)
T ss_pred hhHH
Confidence 5443
No 11
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.52 E-value=2.1e-13 Score=129.51 Aligned_cols=214 Identities=20% Similarity=0.275 Sum_probs=119.6
Q ss_pred cccCCChhHHHHHHHHHHHhcCCCCC--CCCCCCCCCCCcccce----------------eeeCCC--------------
Q 038615 28 ASATNISIHVAASEIERQALLNGGWW--KDRIPHNTSDHCNWVG----------------ITCDYK-------------- 75 (274)
Q Consensus 28 ~~~~~~~~~~~~l~~~~~~l~~~~~~--~~~~w~~~~~~c~w~g----------------v~c~~~-------------- 75 (274)
+.+.+.+.+...+....+.+..|+|. ....|+.++++|.-.. |.|...
T Consensus 56 ~~~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~~fc~~~~~~~~~l~~~~~~~~~tv~~~~~~vt~l~~~g~~~~~ 135 (754)
T PRK15370 56 PPETASPEEIKSKFECLRMLAFPAYADNIQYSRGGADQYCILSENSQEILSIVFNTEGYTVEGGGKSVTYTRVTESEQAS 135 (754)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCchhhccccccCCCCcccccCCcchhhheeeecCCceEEecCCCcccccccccccccc
Confidence 35567778899999999999888752 1234887788885433 444311
Q ss_pred ------------------------------------------CCEEEEEecCCCcccccCccccCCCCCccEEEccCCCC
Q 038615 76 ------------------------------------------GSITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNL 113 (274)
Q Consensus 76 ------------------------------------------~~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l 113 (274)
.+.+.|++++++++ .+|. .+ .++++.|++++|.+
T Consensus 136 ~~~~~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lt-sLP~-~I--p~~L~~L~Ls~N~L 211 (754)
T PRK15370 136 SASGSKDAVNYELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLT-TIPA-CI--PEQITTLILDNNEL 211 (754)
T ss_pred cCCCCCChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcC-cCCc-cc--ccCCcEEEecCCCC
Confidence 02455666666655 3444 22 24577777777777
Q ss_pred CCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEECCCCCCCCCcCCCchhccCCcccceeecccccCCCCCc
Q 038615 114 SGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIP 193 (274)
Q Consensus 114 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p 193 (274)
+ .+|..+. ++|++|++++|.++ .+|..+. .+|+.|++++|.+. .+|..+. ++|+.|++++|++. .+|
T Consensus 212 t-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~----~LP~~l~--s~L~~L~Ls~N~L~-~LP 278 (754)
T PRK15370 212 K-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT----ELPERLP--SALQSLDLFHNKIS-CLP 278 (754)
T ss_pred C-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC----cCChhHh--CCCCEEECcCCccC-ccc
Confidence 6 4554433 46777777777776 4554332 35666666666664 2333322 34666666666655 244
Q ss_pred hhhcCCCCCCeeecccCcCCCCCchhcc-------------------CCCCCCEEEccCCccCcccccCccccccccCCc
Q 038615 194 STLGHLTSLLYLDLSSNQLHSFIPLEIG-------------------NFSALEELDLSDNKIRALQIIQPSISQSFIKPT 254 (274)
Q Consensus 194 ~~l~~l~~L~~L~ls~N~l~~~~p~~l~-------------------~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~ 254 (274)
..+. ++|+.|++++|++++ +|..+. -.++|+.|++++|.+++++. .+..++..++
T Consensus 279 ~~l~--~sL~~L~Ls~N~Lt~-LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~---~l~~sL~~L~ 352 (754)
T PRK15370 279 ENLP--EELRYLSVYDNSIRT-LPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPA---SLPPELQVLD 352 (754)
T ss_pred cccC--CCCcEEECCCCcccc-CcccchhhHHHHHhcCCccccCCccccccceeccccCCccccCCh---hhcCcccEEE
Confidence 4332 355666666665554 222211 11355666666666655432 2234556666
Q ss_pred cCCccccCCC
Q 038615 255 FRPNTFCNWK 264 (274)
Q Consensus 255 ~~~~~~~~~~ 264 (274)
+++|.|..+|
T Consensus 353 Ls~N~L~~LP 362 (754)
T PRK15370 353 VSKNQITVLP 362 (754)
T ss_pred CCCCCCCcCC
Confidence 6666666554
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.50 E-value=1.6e-16 Score=135.78 Aligned_cols=172 Identities=31% Similarity=0.413 Sum_probs=119.6
Q ss_pred EEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEECC
Q 038615 78 ITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLP 157 (274)
Q Consensus 78 l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 157 (274)
+..++..+|++. .+|. .+..+..+..+++.+|.++...|. .-.++.|++||...|.++ .+|+.++.+.+|+.|++.
T Consensus 139 l~dl~~~~N~i~-slp~-~~~~~~~l~~l~~~~n~l~~l~~~-~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~ 214 (565)
T KOG0472|consen 139 LEDLDATNNQIS-SLPE-DMVNLSKLSKLDLEGNKLKALPEN-HIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLR 214 (565)
T ss_pred hhhhhccccccc-cCch-HHHHHHHHHHhhccccchhhCCHH-HHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhh
Confidence 334445555555 4555 556666666666666666633333 333777777777777776 777777777778778888
Q ss_pred CCCCCCCcCCCchhccCCcccceeecccccCCCCCchh-hcCCCCCCeeecccCcCCCCCchhccCCCCCCEEEccCCcc
Q 038615 158 SNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPST-LGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKI 236 (274)
Q Consensus 158 ~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~-l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l 236 (274)
+|.+. .+| .|..+..|+++.++.|.+. .+|.. .++++++.+||+.+|+++. .|+.+-.+.+|.+||+++|.|
T Consensus 215 ~Nki~----~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke-~Pde~clLrsL~rLDlSNN~i 287 (565)
T KOG0472|consen 215 RNKIR----FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKE-VPDEICLLRSLERLDLSNNDI 287 (565)
T ss_pred hcccc----cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecccccccc-CchHHHHhhhhhhhcccCCcc
Confidence 87774 344 5777777777777777766 34444 4478888888999998876 788888888888899999998
Q ss_pred CcccccCccccccccCCccCCccccC
Q 038615 237 RALQIIQPSISQSFIKPTFRPNTFCN 262 (274)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (274)
++.++....+ +++.+.+.||.+.+
T Consensus 288 s~Lp~sLgnl--hL~~L~leGNPlrT 311 (565)
T KOG0472|consen 288 SSLPYSLGNL--HLKFLALEGNPLRT 311 (565)
T ss_pred ccCCcccccc--eeeehhhcCCchHH
Confidence 8887655444 66777778877654
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.50 E-value=7.9e-14 Score=132.39 Aligned_cols=172 Identities=25% Similarity=0.345 Sum_probs=88.7
Q ss_pred CEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCC-------------------CCCCCeeeccCCcC
Q 038615 77 SITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGS-------------------LSNLKYLNLRWNNL 137 (274)
Q Consensus 77 ~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~-------------------l~~L~~L~L~~n~l 137 (274)
.++.|++++|++. .+|. .+. ++|+.|++++|.++ .+|..+.. ..+|++|++++|.+
T Consensus 200 ~L~~L~Ls~N~Lt-sLP~-~l~--~nL~~L~Ls~N~Lt-sLP~~l~~~L~~L~Ls~N~L~~LP~~l~s~L~~L~Ls~N~L 274 (754)
T PRK15370 200 QITTLILDNNELK-SLPE-NLQ--GNIKTLYANSNQLT-SIPATLPDTIQEMELSINRITELPERLPSALQSLDLFHNKI 274 (754)
T ss_pred CCcEEEecCCCCC-cCCh-hhc--cCCCEEECCCCccc-cCChhhhccccEEECcCCccCcCChhHhCCCCEEECcCCcc
Confidence 5667777777766 4444 221 35555555555554 23332211 12455566665555
Q ss_pred CCccchhccCCCCCcEEECCCCCCCCCcCCCchhc---------------cCCcccceeecccccCCCCCchhhcCCCCC
Q 038615 138 TGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREI---------------GNLKNLTHLSLITNKRTGAIPSTLGHLTSL 202 (274)
Q Consensus 138 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~lp~~l---------------~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L 202 (274)
+ .+|..+. ++|+.|++++|+++.+...+|..+ ...++|+.|++++|.+++ +|..+. ++|
T Consensus 275 ~-~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~-LP~~l~--~sL 348 (754)
T PRK15370 275 S-CLPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTS-LPASLP--PEL 348 (754)
T ss_pred C-ccccccC--CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCcccc-CChhhc--Ccc
Confidence 5 3444332 356666666666653322222100 001234555555555443 333332 466
Q ss_pred CeeecccCcCCCCCchhccCCCCCCEEEccCCccCcccccCccccccccCCccCCccccCCCC
Q 038615 203 LYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKIRALQIIQPSISQSFIKPTFRPNTFCNWKT 265 (274)
Q Consensus 203 ~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (274)
+.|++++|+++. +|..+. ++|+.|++++|+|++++. .+...+..+++++|.|..+|.
T Consensus 349 ~~L~Ls~N~L~~-LP~~lp--~~L~~LdLs~N~Lt~LP~---~l~~sL~~LdLs~N~L~~LP~ 405 (754)
T PRK15370 349 QVLDVSKNQITV-LPETLP--PTITTLDVSRNALTNLPE---NLPAALQIMQASRNNLVRLPE 405 (754)
T ss_pred cEEECCCCCCCc-CChhhc--CCcCEEECCCCcCCCCCH---hHHHHHHHHhhccCCcccCch
Confidence 666676666654 454442 467777777777765432 333456666777777776654
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.46 E-value=5.2e-15 Score=126.67 Aligned_cols=152 Identities=30% Similarity=0.460 Sum_probs=123.9
Q ss_pred CEEEEEecCCCcccccCccccCCCCCccE-EEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEE
Q 038615 77 SITHIELVECSIKGELGSLNFSCFPNLQY-LNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELY 155 (274)
Q Consensus 77 ~l~~L~l~~~~l~~~l~~~~l~~l~~L~~-L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 155 (274)
-|+.++++.|++. ++|. .+..+..+.+ +.+++|.+ +.+|..++.+++|..|+|++|.+. .+|..++.+..||.++
T Consensus 389 ~Vt~VnfskNqL~-elPk-~L~~lkelvT~l~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~Ln 464 (565)
T KOG0472|consen 389 IVTSVNFSKNQLC-ELPK-RLVELKELVTDLVLSNNKI-SFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLN 464 (565)
T ss_pred ceEEEecccchHh-hhhh-hhHHHHHHHHHHHhhcCcc-ccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheec
Confidence 3788888888887 6776 4544444433 44555555 478888899999999999999887 8899999999999999
Q ss_pred CCCCCCCCCcCCCchhccCCcccceeecccccCCCCCchhhcCCCCCCeeecccCcCCCCCchhccCCCCCCEEEccCCc
Q 038615 156 LPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNK 235 (274)
Q Consensus 156 L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N~ 235 (274)
++.|+|. .+|..+..+..++.+-.++|++....++.++.+.+|..||+.+|.+.. +|..++++++|++|++.+|+
T Consensus 465 lS~NrFr----~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~-IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 465 LSFNRFR----MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQ-IPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred ccccccc----cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhh-CChhhccccceeEEEecCCc
Confidence 9999884 567777777778888788888887666679999999999999999976 78899999999999999999
Q ss_pred cC
Q 038615 236 IR 237 (274)
Q Consensus 236 l~ 237 (274)
|+
T Consensus 540 fr 541 (565)
T KOG0472|consen 540 FR 541 (565)
T ss_pred cC
Confidence 98
No 15
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.44 E-value=1.7e-14 Score=125.15 Aligned_cols=188 Identities=24% Similarity=0.287 Sum_probs=132.5
Q ss_pred CCCEEEEEecCCCcccccCccccCCC---CCccEEEccCCCCCC----CCCccCCCC-CCCCeeeccCCcCCCc----cc
Q 038615 75 KGSITHIELVECSIKGELGSLNFSCF---PNLQYLNLWNNNLSG----SIPPQIGSL-SNLKYLNLRWNNLTGT----IP 142 (274)
Q Consensus 75 ~~~l~~L~l~~~~l~~~l~~~~l~~l---~~L~~L~l~~n~l~~----~~p~~l~~l-~~L~~L~L~~n~l~~~----~p 142 (274)
..+++.|+++++.+.+..+. .+..+ ++|++|++++|.+.+ .+...+..+ ++|++|++++|.+++. ++
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~-~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~ 158 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCG-VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALA 158 (319)
T ss_pred cCceeEEEccCCCCChhHHH-HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHH
Confidence 45899999999998754443 44444 449999999999873 233345566 8899999999999843 33
Q ss_pred hhccCCCCCcEEECCCCCCCCCc-CCCchhccCCcccceeecccccCCCC----CchhhcCCCCCCeeecccCcCCCCCc
Q 038615 143 TEIGIFRNLEELYLPSNKLNGFN-GTIPREIGNLKNLTHLSLITNKRTGA----IPSTLGHLTSLLYLDLSSNQLHSFIP 217 (274)
Q Consensus 143 ~~~~~l~~L~~L~L~~n~l~~~~-~~lp~~l~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~ls~N~l~~~~p 217 (274)
..+..+++|++|++++|.++... ..++..+...++|++|++++|.+.+. +...+..+++|++|++++|.+++...
T Consensus 159 ~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~ 238 (319)
T cd00116 159 KALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGA 238 (319)
T ss_pred HHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHH
Confidence 45667789999999999985210 12334455667999999999988753 33445678899999999999986433
Q ss_pred hhcc-----CCCCCCEEEccCCccCcc--cccCccc--cccccCCccCCccccCC
Q 038615 218 LEIG-----NFSALEELDLSDNKIRAL--QIIQPSI--SQSFIKPTFRPNTFCNW 263 (274)
Q Consensus 218 ~~l~-----~l~~L~~L~l~~N~l~~~--~~~~~~~--~~~~~~~~~~~~~~~~~ 263 (274)
..+. ..+.|+.|++++|.++.. ......+ ...+..+++++|.|...
T Consensus 239 ~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 239 AALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred HHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 2222 247899999999999732 2111111 24677788999888765
No 16
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.44 E-value=1e-14 Score=126.51 Aligned_cols=163 Identities=28% Similarity=0.321 Sum_probs=100.0
Q ss_pred CCEEEEEecCCCccc----ccCccccCCC-CCccEEEccCCCCCCC----CCccCCCCCCCCeeeccCCcCCCc----cc
Q 038615 76 GSITHIELVECSIKG----ELGSLNFSCF-PNLQYLNLWNNNLSGS----IPPQIGSLSNLKYLNLRWNNLTGT----IP 142 (274)
Q Consensus 76 ~~l~~L~l~~~~l~~----~l~~~~l~~l-~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~p 142 (274)
.++++|++++|.+.+ .+.. .+..+ ++|+.|++++|.+++. ++..+..+++|++|++++|.+++. ++
T Consensus 108 ~~L~~L~ls~~~~~~~~~~~l~~-~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~ 186 (319)
T cd00116 108 SSLQELKLNNNGLGDRGLRLLAK-GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALA 186 (319)
T ss_pred CcccEEEeeCCccchHHHHHHHH-HHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHH
Confidence 347778887777662 1222 34455 7778888888777632 233455566778888887777632 23
Q ss_pred hhccCCCCCcEEECCCCCCCCCc-CCCchhccCCcccceeecccccCCCCCchhhc-----CCCCCCeeecccCcCCCC-
Q 038615 143 TEIGIFRNLEELYLPSNKLNGFN-GTIPREIGNLKNLTHLSLITNKRTGAIPSTLG-----HLTSLLYLDLSSNQLHSF- 215 (274)
Q Consensus 143 ~~~~~l~~L~~L~L~~n~l~~~~-~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~-----~l~~L~~L~ls~N~l~~~- 215 (274)
..+..+++|++|++++|.++... ..++..+..+++|++|++++|.+.+.....+. ..+.|++|++++|.+++.
T Consensus 187 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~ 266 (319)
T cd00116 187 EGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDG 266 (319)
T ss_pred HHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHH
Confidence 33445567888888877764211 12334455667788888887777652222221 136777888888877621
Q ss_pred ---CchhccCCCCCCEEEccCCccCcc
Q 038615 216 ---IPLEIGNFSALEELDLSDNKIRAL 239 (274)
Q Consensus 216 ---~p~~l~~l~~L~~L~l~~N~l~~~ 239 (274)
+...+..+++|+++++++|+++..
T Consensus 267 ~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 267 AKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred HHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 334455667778888888887755
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.43 E-value=9.9e-13 Score=124.65 Aligned_cols=77 Identities=27% Similarity=0.341 Sum_probs=44.6
Q ss_pred CEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhc-----------
Q 038615 77 SITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEI----------- 145 (274)
Q Consensus 77 ~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~----------- 145 (274)
+++.|++.+|+++ .+|. .+++|++|++++|+++ .+|.. .++|++|++++|.++ .+|...
T Consensus 223 ~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~-~Lp~lp~~L~~L~Ls~N 292 (788)
T PRK15387 223 HITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLT-HLPALPSGLCKLWIFGN 292 (788)
T ss_pred CCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccC-cccCc---ccccceeeccCCchh-hhhhchhhcCEEECcCC
Confidence 5677788877777 4554 2467888888888887 34532 234555555555444 222111
Q ss_pred ------cCCCCCcEEECCCCCCCC
Q 038615 146 ------GIFRNLEELYLPSNKLNG 163 (274)
Q Consensus 146 ------~~l~~L~~L~L~~n~l~~ 163 (274)
..+++|+.|++++|+++.
T Consensus 293 ~Lt~LP~~p~~L~~LdLS~N~L~~ 316 (788)
T PRK15387 293 QLTSLPVLPPGLQELSVSDNQLAS 316 (788)
T ss_pred ccccccccccccceeECCCCcccc
Confidence 012467777777776653
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.42 E-value=4.4e-12 Score=120.32 Aligned_cols=163 Identities=24% Similarity=0.315 Sum_probs=82.0
Q ss_pred CCEEEEEecCCCcccccCccccCC-----------------CCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCC
Q 038615 76 GSITHIELVECSIKGELGSLNFSC-----------------FPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLT 138 (274)
Q Consensus 76 ~~l~~L~l~~~~l~~~l~~~~l~~-----------------l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 138 (274)
..++.|++++|+++ .+|. .... ++.|+.|++++|+++ .+|. ..++|+.|++++|.++
T Consensus 242 ~~Lk~LdLs~N~Lt-sLP~-lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~ 315 (788)
T PRK15387 242 PELRTLEVSGNQLT-SLPV-LPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLA 315 (788)
T ss_pred CCCcEEEecCCccC-cccC-cccccceeeccCCchhhhhhchhhcCEEECcCCccc-cccc---cccccceeECCCCccc
Confidence 46788999998887 4443 1111 123444555555554 2332 2367899999999888
Q ss_pred CccchhccC----------------C-CCCcEEECCCCCCCCCcCCCchhccCCcccceeecccccCCCCCchhhcCCCC
Q 038615 139 GTIPTEIGI----------------F-RNLEELYLPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTS 201 (274)
Q Consensus 139 ~~~p~~~~~----------------l-~~L~~L~L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~ 201 (274)
+ +|..... + .+|++|++++|+++. +|.. .++|+.|++++|.+.. +|.. ..+
T Consensus 316 ~-Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~----LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~ 383 (788)
T PRK15387 316 S-LPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLAS----LPTL---PSELYKLWAYNNRLTS-LPAL---PSG 383 (788)
T ss_pred c-CCCCcccccccccccCccccccccccccceEecCCCccCC----CCCC---Ccccceehhhcccccc-Cccc---ccc
Confidence 4 4432111 0 145555555555532 2211 1233444444444432 2321 134
Q ss_pred CCeeecccCcCCCCCchhccCCCCCCEEEccCCccCcccccCccccccccCCccCCccccCCC
Q 038615 202 LLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKIRALQIIQPSISQSFIKPTFRPNTFCNWK 264 (274)
Q Consensus 202 L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (274)
|+.|++++|.+++ +|.. .++|+.|++++|+|++++.. ...+..+++++|.|+.+|
T Consensus 384 L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~LssIP~l----~~~L~~L~Ls~NqLt~LP 438 (788)
T PRK15387 384 LKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTSLPML----PSGLLSLSVYRNQLTRLP 438 (788)
T ss_pred cceEEecCCcccC-CCCc---ccCCCEEEccCCcCCCCCcc----hhhhhhhhhccCcccccC
Confidence 5666666666654 3432 24566666666666654332 223344555555555443
No 19
>PLN03150 hypothetical protein; Provisional
Probab=99.40 E-value=9.9e-13 Score=123.76 Aligned_cols=118 Identities=31% Similarity=0.462 Sum_probs=88.7
Q ss_pred CCcEEECCCCCCCCCcCCCchhccCCcccceeecccccCCCCCchhhcCCCCCCeeecccCcCCCCCchhccCCCCCCEE
Q 038615 150 NLEELYLPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEEL 229 (274)
Q Consensus 150 ~L~~L~L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L 229 (274)
.++.|+|++|.+ .|.+|..+..+++|+.|+|++|.+.|.+|..++.+++|+.|++++|+++|.+|+.++++++|+.|
T Consensus 419 ~v~~L~L~~n~L---~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L 495 (623)
T PLN03150 419 FIDGLGLDNQGL---RGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRIL 495 (623)
T ss_pred EEEEEECCCCCc---cccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEE
Confidence 367788888887 67788888888888888888888888888888888888888888888888888888888888888
Q ss_pred EccCCccCcccccCcc-ccccccCCccCCcc-ccCCCCCcccc
Q 038615 230 DLSDNKIRALQIIQPS-ISQSFIKPTFRPNT-FCNWKTLQPCV 270 (274)
Q Consensus 230 ~l~~N~l~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~l~~c~ 270 (274)
++++|+++|..+.... ........++.+|. +|+.|.+..|.
T Consensus 496 ~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~ 538 (623)
T PLN03150 496 NLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG 538 (623)
T ss_pred ECcCCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence 8888888877543211 11123344566665 77777777774
No 20
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.40 E-value=3.1e-12 Score=128.25 Aligned_cols=80 Identities=18% Similarity=0.307 Sum_probs=38.8
Q ss_pred CEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEEC
Q 038615 77 SITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYL 156 (274)
Q Consensus 77 ~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 156 (274)
+++.|++.++.+. .++. .+..+++|+.|+++++.....+| .++.+++|++|++++|.....+|..++.+++|+.|++
T Consensus 612 ~L~~L~L~~s~l~-~L~~-~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L 688 (1153)
T PLN03210 612 NLVKLQMQGSKLE-KLWD-GVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDM 688 (1153)
T ss_pred CCcEEECcCcccc-cccc-ccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeC
Confidence 5556666666554 3444 34455555555555543322333 2444455555555544433344444444444444444
Q ss_pred CCC
Q 038615 157 PSN 159 (274)
Q Consensus 157 ~~n 159 (274)
++|
T Consensus 689 ~~c 691 (1153)
T PLN03210 689 SRC 691 (1153)
T ss_pred CCC
Confidence 443
No 21
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.35 E-value=9.9e-12 Score=124.70 Aligned_cols=82 Identities=23% Similarity=0.269 Sum_probs=46.4
Q ss_pred CCEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEE
Q 038615 76 GSITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELY 155 (274)
Q Consensus 76 ~~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 155 (274)
.+++.|+++++...+.+|. +..+++|+.|++++|.....+|..+..+++|+.|++++|.....+|..+ ++++|+.|+
T Consensus 634 ~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~ 710 (1153)
T PLN03210 634 TGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLN 710 (1153)
T ss_pred CCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEe
Confidence 3556666665543334443 5556666666666655444566666666666666666654333555544 456666666
Q ss_pred CCCCC
Q 038615 156 LPSNK 160 (274)
Q Consensus 156 L~~n~ 160 (274)
+++|.
T Consensus 711 Lsgc~ 715 (1153)
T PLN03210 711 LSGCS 715 (1153)
T ss_pred CCCCC
Confidence 66653
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.34 E-value=8.1e-14 Score=129.99 Aligned_cols=128 Identities=38% Similarity=0.487 Sum_probs=85.9
Q ss_pred CCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccch-hccCCCCCcEEECCCCCCCCCcCCCchhccCCcccc
Q 038615 101 PNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPT-EIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLT 179 (274)
Q Consensus 101 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~~~lp~~l~~l~~L~ 179 (274)
+.|+.|++.+|.+++...+.+..+++|+.|+|++|++. .+|+ .+.+++.|++|++++|.++ .+|..+.+++.|+
T Consensus 359 ~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~----~Lp~tva~~~~L~ 433 (1081)
T KOG0618|consen 359 AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT----TLPDTVANLGRLH 433 (1081)
T ss_pred HHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh----hhhHHHHhhhhhH
Confidence 34566666777776666666677777777777777776 4443 4667777777777777774 5566677777777
Q ss_pred eeecccccCCCCCchhhcCCCCCCeeecccCcCCCCCchhccCCCCCCEEEccCCc
Q 038615 180 HLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNK 235 (274)
Q Consensus 180 ~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N~ 235 (274)
+|...+|.+. .+| .+.+++.|+.+|++.|+++...-..-...++|++||+++|.
T Consensus 434 tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 434 TLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred HHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence 7777777766 445 56777777777777777765432222334677777777776
No 23
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.31 E-value=8e-14 Score=124.03 Aligned_cols=146 Identities=29% Similarity=0.524 Sum_probs=123.3
Q ss_pred ecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEECCCCCCC
Q 038615 83 LVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLN 162 (274)
Q Consensus 83 l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 162 (274)
+..|.+. .++. .+.++..|++|+|+.|+++ .+|..+..++ |+.|-+++|+++ .+|+.++...+|..||.+.|.+.
T Consensus 105 Ly~n~~r-~ip~-~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~ 179 (722)
T KOG0532|consen 105 LYHNCIR-TIPE-AICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ 179 (722)
T ss_pred HHhccce-ecch-hhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh
Confidence 3344443 4566 7788899999999999998 6777777766 899999999998 88999998889999999999985
Q ss_pred CCcCCCchhccCCcccceeecccccCCCCCchhhcCCCCCCeeecccCcCCCCCchhccCCCCCCEEEccCCccCccc
Q 038615 163 GFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKIRALQ 240 (274)
Q Consensus 163 ~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~ 240 (274)
.+|..++.+.+|+.|++..|++. .+|+.+..++ |..||+|.|+++. +|-.|.+|+.|++|-|.+|.++..+
T Consensus 180 ----slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis~-iPv~fr~m~~Lq~l~LenNPLqSPP 250 (722)
T KOG0532|consen 180 ----SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKISY-LPVDFRKMRHLQVLQLENNPLQSPP 250 (722)
T ss_pred ----hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCceee-cchhhhhhhhheeeeeccCCCCCCh
Confidence 67888999999999999999988 4667777554 8999999999986 8999999999999999999998765
No 24
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.28 E-value=3.6e-12 Score=114.06 Aligned_cols=177 Identities=32% Similarity=0.490 Sum_probs=131.1
Q ss_pred CCEEEEEecCCCcccccCccccCCCC-CccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEE
Q 038615 76 GSITHIELVECSIKGELGSLNFSCFP-NLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEEL 154 (274)
Q Consensus 76 ~~l~~L~l~~~~l~~~l~~~~l~~l~-~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 154 (274)
..++.|++.++.+. .+++ ....+. +|+.|++++|.+. .+|..+..++.|+.|++++|+++ .+|...+..+.|+.|
T Consensus 116 ~~l~~L~l~~n~i~-~i~~-~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L 191 (394)
T COG4886 116 TNLTSLDLDNNNIT-DIPP-LIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNL 191 (394)
T ss_pred cceeEEecCCcccc-cCcc-ccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhhe
Confidence 35788888888887 6666 566664 8999999999887 56566788889999999999988 667666678889999
Q ss_pred ECCCCCCCCCcCCCchhccCCcccceeecccccCCCCCchhhcCCCCCCeeecccCcCCCCCchhccCCCCCCEEEccCC
Q 038615 155 YLPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDN 234 (274)
Q Consensus 155 ~L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N 234 (274)
++++|+++ .+|........|+++.+++|... ..+..+..+.++..+.+.+|++.. .+..++.++++++|++++|
T Consensus 192 ~ls~N~i~----~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n 265 (394)
T COG4886 192 DLSGNKIS----DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNN 265 (394)
T ss_pred eccCCccc----cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccchhccccccceeccccc
Confidence 99999885 45555455566888888888533 344566777777777778887765 3566777778888888888
Q ss_pred ccCcccccCccccccccCCccCCccccCCC
Q 038615 235 KIRALQIIQPSISQSFIKPTFRPNTFCNWK 264 (274)
Q Consensus 235 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (274)
.++.+.. ......+..+++++|.+...+
T Consensus 266 ~i~~i~~--~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 266 QISSISS--LGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred ccccccc--ccccCccCEEeccCccccccc
Confidence 8887765 344566677777777665543
No 25
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.27 E-value=4e-13 Score=125.47 Aligned_cols=176 Identities=28% Similarity=0.353 Sum_probs=133.3
Q ss_pred CCEEEEEecCCCcccccCccccCCCCC-ccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEE
Q 038615 76 GSITHIELVECSIKGELGSLNFSCFPN-LQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEEL 154 (274)
Q Consensus 76 ~~l~~L~l~~~~l~~~l~~~~l~~l~~-L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 154 (274)
..++.|+|..|++. .+|+..+..... ++.|..+.|.+.......-..++.|+.|++.+|.+++..-+.+.++.+|+.|
T Consensus 310 ~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVL 388 (1081)
T KOG0618|consen 310 KSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVL 388 (1081)
T ss_pred ceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeee
Confidence 36888999999887 566634444444 7778888887763322223356778999999999987776778888999999
Q ss_pred ECCCCCCCCCcCCCchhccCCcccceeecccccCCCCCchhhcCCCCCCeeecccCcCCCCCchhccCCCCCCEEEccCC
Q 038615 155 YLPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDN 234 (274)
Q Consensus 155 ~L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N 234 (274)
+|++|+++.+.. ..+.++..|++|++++|+++ .+|..+..++.|++|...+|++.. .| .+..++.|+.+|++.|
T Consensus 389 hLsyNrL~~fpa---s~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~-fP-e~~~l~qL~~lDlS~N 462 (1081)
T KOG0618|consen 389 HLSYNRLNSFPA---SKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLS-FP-ELAQLPQLKVLDLSCN 462 (1081)
T ss_pred eecccccccCCH---HHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceee-ch-hhhhcCcceEEecccc
Confidence 999998864332 34678888999999999988 677888889999999999998875 56 7788899999999999
Q ss_pred ccCcccccCcccc-ccccCCccCCcc
Q 038615 235 KIRALQIIQPSIS-QSFIKPTFRPNT 259 (274)
Q Consensus 235 ~l~~~~~~~~~~~-~~~~~~~~~~~~ 259 (274)
+++..... .... ..+..+|+++|.
T Consensus 463 ~L~~~~l~-~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 463 NLSEVTLP-EALPSPNLKYLDLSGNT 487 (1081)
T ss_pred hhhhhhhh-hhCCCcccceeeccCCc
Confidence 99866432 3333 677777888876
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.26 E-value=1e-13 Score=123.38 Aligned_cols=180 Identities=31% Similarity=0.460 Sum_probs=147.9
Q ss_pred CEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEEC
Q 038615 77 SITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYL 156 (274)
Q Consensus 77 ~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 156 (274)
..+..+++.|.+. ++|. .+..|..|+.+.+..|.+. .+|..+.++..|.+|+|+.|+++ .+|..+..++ |+.|-+
T Consensus 76 dt~~aDlsrNR~~-elp~-~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 76 DTVFADLSRNRFS-ELPE-EACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIV 150 (722)
T ss_pred chhhhhccccccc-cCch-HHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEE
Confidence 3455777788877 6777 7788888899999998887 78888999999999999999998 7888776654 888999
Q ss_pred CCCCCCCCcCCCchhccCCcccceeecccccCCCCCchhhcCCCCCCeeecccCcCCCCCchhccCCCCCCEEEccCCcc
Q 038615 157 PSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKI 236 (274)
Q Consensus 157 ~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l 236 (274)
++|+++ .+|..++.++.|..|+.+.|.+. .+|..++.+.+|+.|++..|++.. +|..+..++ |..||+++|++
T Consensus 151 sNNkl~----~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~El~~Lp-Li~lDfScNki 223 (722)
T KOG0532|consen 151 SNNKLT----SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEELCSLP-LIRLDFSCNKI 223 (722)
T ss_pred ecCccc----cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHHHhCCc-eeeeecccCce
Confidence 999985 66888888899999999999987 577889999999999999999987 677777765 89999999999
Q ss_pred CcccccCccccccccCCccCCccccCCCCCcccc
Q 038615 237 RALQIIQPSISQSFIKPTFRPNTFCNWKTLQPCV 270 (274)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~c~ 270 (274)
+.++. -+.-+..+..+.+..|.+.+ |+-+-|.
T Consensus 224 s~iPv-~fr~m~~Lq~l~LenNPLqS-PPAqIC~ 255 (722)
T KOG0532|consen 224 SYLPV-DFRKMRHLQVLQLENNPLQS-PPAQICE 255 (722)
T ss_pred eecch-hhhhhhhheeeeeccCCCCC-ChHHHHh
Confidence 87754 34556677778898888888 5666554
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.21 E-value=1.7e-11 Score=96.51 Aligned_cols=127 Identities=29% Similarity=0.360 Sum_probs=42.2
Q ss_pred cCCCCCccEEEccCCCCCCCCCccCC-CCCCCCeeeccCCcCCCccchhccCCCCCcEEECCCCCCCCCcCCCchhc-cC
Q 038615 97 FSCFPNLQYLNLWNNNLSGSIPPQIG-SLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREI-GN 174 (274)
Q Consensus 97 l~~l~~L~~L~l~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~lp~~l-~~ 174 (274)
+.+...+++|+|.+|.|+. + +.++ .+.+|+.|++++|.++ .++ .+..++.|++|++++|+++. +...+ ..
T Consensus 15 ~~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~----i~~~l~~~ 86 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISS----ISEGLDKN 86 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-----CHHHHHH
T ss_pred ccccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCc----cccchHHh
Confidence 3344457778888887762 2 2344 4667778888888777 332 46667778888888887753 22223 35
Q ss_pred CcccceeecccccCCCC-CchhhcCCCCCCeeecccCcCCCCC---chhccCCCCCCEEEc
Q 038615 175 LKNLTHLSLITNKRTGA-IPSTLGHLTSLLYLDLSSNQLHSFI---PLEIGNFSALEELDL 231 (274)
Q Consensus 175 l~~L~~L~l~~n~l~~~-~p~~l~~l~~L~~L~ls~N~l~~~~---p~~l~~l~~L~~L~l 231 (274)
+++|++|++++|++... .-..+..+++|+.|++.+|+++... ...+..+|+|+.||-
T Consensus 87 lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 87 LPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 67777777777777542 1244566777777777777776431 123456677777653
No 28
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.21 E-value=1.8e-12 Score=110.95 Aligned_cols=164 Identities=23% Similarity=0.228 Sum_probs=120.1
Q ss_pred CCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEECCC-CCCCCCcCCC-----------
Q 038615 101 PNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPS-NKLNGFNGTI----------- 168 (274)
Q Consensus 101 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~-n~l~~~~~~l----------- 168 (274)
+....++|..|+|+...+..|+.+++|+.|||++|.|+..-|+.|..+++|..|-+-+ |+|+++....
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 3577899999999977777899999999999999999988899999998877666554 8997543211
Q ss_pred ----------chhccCCcccceeecccccCCC------------------------------------------------
Q 038615 169 ----------PREIGNLKNLTHLSLITNKRTG------------------------------------------------ 190 (274)
Q Consensus 169 ----------p~~l~~l~~L~~L~l~~n~l~~------------------------------------------------ 190 (274)
...+..++++..|.+.+|.+..
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 1122233333333333332210
Q ss_pred -------------------------------------CC-chhhcCCCCCCeeecccCcCCCCCchhccCCCCCCEEEcc
Q 038615 191 -------------------------------------AI-PSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLS 232 (274)
Q Consensus 191 -------------------------------------~~-p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~ 232 (274)
.- ...|+.+++|+.|++++|++++.-+.+|....++++|.|.
T Consensus 227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~ 306 (498)
T KOG4237|consen 227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLT 306 (498)
T ss_pred chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcC
Confidence 00 0235677899999999999999888899999999999999
Q ss_pred CCccCcccccCccccccccCCccCCccccCCC
Q 038615 233 DNKIRALQIIQPSISQSFIKPTFRPNTFCNWK 264 (274)
Q Consensus 233 ~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (274)
.|+|..+....+.-...+..+++.+|+|+.+.
T Consensus 307 ~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~ 338 (498)
T KOG4237|consen 307 RNKLEFVSSGMFQGLSGLKTLSLYDNQITTVA 338 (498)
T ss_pred cchHHHHHHHhhhccccceeeeecCCeeEEEe
Confidence 99998776655555667777889999887653
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.19 E-value=2.2e-11 Score=95.84 Aligned_cols=124 Identities=27% Similarity=0.382 Sum_probs=54.4
Q ss_pred CEEEEEecCCCcccccCccccC-CCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhc-cCCCCCcEE
Q 038615 77 SITHIELVECSIKGELGSLNFS-CFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEI-GIFRNLEEL 154 (274)
Q Consensus 77 ~l~~L~l~~~~l~~~l~~~~l~-~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L 154 (274)
++++|+|.++.+. .+.. ++ .+.+|+.|++++|.++. +. .+..+++|++|++++|.++ .+++.+ ..+++|++|
T Consensus 20 ~~~~L~L~~n~I~-~Ie~--L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 20 KLRELNLRGNQIS-TIEN--LGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQEL 93 (175)
T ss_dssp -----------------S----TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred ccccccccccccc-cccc--hhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEE
Confidence 5789999999998 4543 44 67899999999999984 33 5788999999999999999 455444 468999999
Q ss_pred ECCCCCCCCCcCCCchhccCCcccceeecccccCCCCC---chhhcCCCCCCeeecc
Q 038615 155 YLPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAI---PSTLGHLTSLLYLDLS 208 (274)
Q Consensus 155 ~L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~---p~~l~~l~~L~~L~ls 208 (274)
++++|++.++.. + ..+..+++|+.|++.+|.+.... ...+..+|+|+.||-.
T Consensus 94 ~L~~N~I~~l~~-l-~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 94 YLSNNKISDLNE-L-EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp E-TTS---SCCC-C-GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred ECcCCcCCChHH-h-HHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 999999976543 3 45788999999999999987541 1235678999999853
No 30
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.09 E-value=5.9e-11 Score=106.22 Aligned_cols=153 Identities=37% Similarity=0.588 Sum_probs=129.9
Q ss_pred CEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEEC
Q 038615 77 SITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYL 156 (274)
Q Consensus 77 ~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 156 (274)
+++.|++++|.+. .++. .+..++.|+.|++++|++. .+|......+.|+.|++++|.++ .+|........|+++.+
T Consensus 141 nL~~L~l~~N~i~-~l~~-~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~ 216 (394)
T COG4886 141 NLKELDLSDNKIE-SLPS-PLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDL 216 (394)
T ss_pred hcccccccccchh-hhhh-hhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhh
Confidence 7999999999998 6655 6899999999999999998 56766668899999999999999 78887767778999999
Q ss_pred CCCCCCCCcCCCchhccCCcccceeecccccCCCCCchhhcCCCCCCeeecccCcCCCCCchhccCCCCCCEEEccCCcc
Q 038615 157 PSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKI 236 (274)
Q Consensus 157 ~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l 236 (274)
++|++. .++..+.++.++..+.+.+|++.. ++..++.+++++.|++++|.++.. +. ++...+++.|++++|.+
T Consensus 217 ~~N~~~----~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 217 SNNSII----ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQISSI-SS-LGSLTNLRELDLSGNSL 289 (394)
T ss_pred cCCcce----ecchhhhhcccccccccCCceeee-ccchhccccccceecccccccccc-cc-ccccCccCEEeccCccc
Confidence 999542 456678888999999999998764 356788889999999999999874 33 88999999999999998
Q ss_pred Cccc
Q 038615 237 RALQ 240 (274)
Q Consensus 237 ~~~~ 240 (274)
....
T Consensus 290 ~~~~ 293 (394)
T COG4886 290 SNAL 293 (394)
T ss_pred cccc
Confidence 7654
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.05 E-value=1.4e-11 Score=102.46 Aligned_cols=134 Identities=31% Similarity=0.336 Sum_probs=92.0
Q ss_pred CCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEECCCCCCCCCcCCCchhccCCcccc
Q 038615 100 FPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLT 179 (274)
Q Consensus 100 l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~lp~~l~~l~~L~ 179 (274)
...|+.+|+++|.++ .+.+...-.+.++.|++++|.+. .+. .+..+++|+.||+++|.++.+.| +-..+.+++
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~-nLa~L~~L~~LDLS~N~Ls~~~G----wh~KLGNIK 355 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQ-NLAELPQLQLLDLSGNLLAECVG----WHLKLGNIK 355 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eeh-hhhhcccceEeecccchhHhhhh----hHhhhcCEe
Confidence 345777888888776 45555666677888888888776 332 36677788888888887754333 334566777
Q ss_pred eeecccccCCCCCchhhcCCCCCCeeecccCcCCCCC-chhccCCCCCCEEEccCCccCccccc
Q 038615 180 HLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFI-PLEIGNFSALEELDLSDNKIRALQII 242 (274)
Q Consensus 180 ~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~-p~~l~~l~~L~~L~l~~N~l~~~~~~ 242 (274)
.|.+++|.+.. ...++++-+|..||+++|+|...- -..++++|-|+++.|.+|++.+.+..
T Consensus 356 tL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdY 417 (490)
T KOG1259|consen 356 TLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDY 417 (490)
T ss_pred eeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchH
Confidence 78888776642 234566677888888888876432 24577888888888888888877543
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.02 E-value=2.4e-11 Score=101.08 Aligned_cols=129 Identities=25% Similarity=0.328 Sum_probs=106.9
Q ss_pred CEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEEC
Q 038615 77 SITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYL 156 (274)
Q Consensus 77 ~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 156 (274)
.++++|+++|.++ .+.. +..-.|.++.|++++|.+.. + ..+..+++|+.|||++|.++ .+...-.++.+.+.|.+
T Consensus 285 ~LtelDLS~N~I~-~iDE-SvKL~Pkir~L~lS~N~i~~-v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDE-SVKLAPKLRRLILSQNRIRT-V-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhccccccchh-hhhh-hhhhccceeEEeccccceee-e-hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence 4778999999998 6666 77788999999999999973 2 34888999999999999998 55555567889999999
Q ss_pred CCCCCCCCcCCCchhccCCcccceeecccccCCCC-CchhhcCCCCCCeeecccCcCCCC
Q 038615 157 PSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGA-IPSTLGHLTSLLYLDLSSNQLHSF 215 (274)
Q Consensus 157 ~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~-~p~~l~~l~~L~~L~ls~N~l~~~ 215 (274)
++|.+..++| +..+.+|..|++++|++... -...++++|-|+++.+.+|.+.+.
T Consensus 360 a~N~iE~LSG-----L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 360 AQNKIETLSG-----LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhhhHhhhhh-----hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 9999975554 88889999999999998642 224578999999999999999874
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=8.2e-11 Score=102.09 Aligned_cols=162 Identities=28% Similarity=0.298 Sum_probs=88.4
Q ss_pred CEEEEEecCCCccc--ccCccccCCCCCccEEEccCCCCCCCCCccC-CCCCCCCeeeccCCcCCCc-cchhccCCCCCc
Q 038615 77 SITHIELVECSIKG--ELGSLNFSCFPNLQYLNLWNNNLSGSIPPQI-GSLSNLKYLNLRWNNLTGT-IPTEIGIFRNLE 152 (274)
Q Consensus 77 ~l~~L~l~~~~l~~--~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~ 152 (274)
+++.|+|+.|=+.. .+.. ....+++|+.|+++.|.+.-...... ..+++|+.|.|+.|.++.. +-..+..+|+|+
T Consensus 147 ~v~~LdLS~NL~~nw~~v~~-i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~ 225 (505)
T KOG3207|consen 147 NVRDLDLSRNLFHNWFPVLK-IAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLE 225 (505)
T ss_pred cceeecchhhhHHhHHHHHH-HHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHH
Confidence 45566666554442 1111 23456666666666666542211111 1345566666666666522 112234556677
Q ss_pred EEECCCCCCCCCcCCCchhccCCcccceeecccccCCCCC-chhhcCCCCCCeeecccCcCCCC-Cchh-----ccCCCC
Q 038615 153 ELYLPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAI-PSTLGHLTSLLYLDLSSNQLHSF-IPLE-----IGNFSA 225 (274)
Q Consensus 153 ~L~L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~-p~~l~~l~~L~~L~ls~N~l~~~-~p~~-----l~~l~~ 225 (274)
.|++..|... +.-......+..|+.|+|++|++.... ....+.++.|+.|+++.+.++.. .|+. ...+++
T Consensus 226 ~L~L~~N~~~---~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~k 302 (505)
T KOG3207|consen 226 VLYLEANEII---LIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPK 302 (505)
T ss_pred Hhhhhccccc---ceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhccccc
Confidence 7777666321 111112334556777788777776421 13456677777888877777654 2322 345677
Q ss_pred CCEEEccCCccCccccc
Q 038615 226 LEELDLSDNKIRALQII 242 (274)
Q Consensus 226 L~~L~l~~N~l~~~~~~ 242 (274)
|++|++..|++..+..+
T Consensus 303 L~~L~i~~N~I~~w~sl 319 (505)
T KOG3207|consen 303 LEYLNISENNIRDWRSL 319 (505)
T ss_pred ceeeecccCcccccccc
Confidence 88888888888766543
No 34
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.95 E-value=4.3e-10 Score=73.06 Aligned_cols=61 Identities=41% Similarity=0.527 Sum_probs=47.3
Q ss_pred cccceeecccccCCCCCchhhcCCCCCCeeecccCcCCCCCchhccCCCCCCEEEccCCcc
Q 038615 176 KNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKI 236 (274)
Q Consensus 176 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l 236 (274)
|+|++|++++|++....+..+..+++|++|++++|.++...|..|..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4677777887777766666777788888888888888776667788888888888888875
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=1.6e-10 Score=100.30 Aligned_cols=173 Identities=21% Similarity=0.272 Sum_probs=126.2
Q ss_pred cceee--eCCCCCEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCC-CCccCCCCCCCCeeeccCCcCCCccch
Q 038615 67 WVGIT--CDYKGSITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGS-IPPQIGSLSNLKYLNLRWNNLTGTIPT 143 (274)
Q Consensus 67 w~gv~--c~~~~~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~ 143 (274)
|.-|. |+...+++.|+++.|.+.-......-..+++|+.|.++.|+++.. +......+|+|+.|+|..|..-.....
T Consensus 161 w~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~ 240 (505)
T KOG3207|consen 161 WFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKAT 240 (505)
T ss_pred HHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecc
Confidence 54442 456789999999999987544442345788999999999999732 223345789999999999953323333
Q ss_pred hccCCCCCcEEECCCCCCCCCcCCCchhccCCcccceeecccccCCCC-Cchh-----hcCCCCCCeeecccCcCCCCC-
Q 038615 144 EIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGA-IPST-----LGHLTSLLYLDLSSNQLHSFI- 216 (274)
Q Consensus 144 ~~~~l~~L~~L~L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~-~p~~-----l~~l~~L~~L~ls~N~l~~~~- 216 (274)
....+..|++|||++|++-.+. .-...+.++.|+.|+++.+++... .|+. ...+++|++|++..|++..+-
T Consensus 241 ~~~i~~~L~~LdLs~N~li~~~--~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~s 318 (505)
T KOG3207|consen 241 STKILQTLQELDLSNNNLIDFD--QGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRS 318 (505)
T ss_pred hhhhhhHHhhccccCCcccccc--cccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccc
Confidence 4456789999999999985332 224578899999999999988652 2322 356789999999999997652
Q ss_pred chhccCCCCCCEEEccCCccCcccc
Q 038615 217 PLEIGNFSALEELDLSDNKIRALQI 241 (274)
Q Consensus 217 p~~l~~l~~L~~L~l~~N~l~~~~~ 241 (274)
-..+..+++|+.|.+..|.++....
T Consensus 319 l~~l~~l~nlk~l~~~~n~ln~e~~ 343 (505)
T KOG3207|consen 319 LNHLRTLENLKHLRITLNYLNKETD 343 (505)
T ss_pred cchhhccchhhhhhccccccccccc
Confidence 1345566788999999999987644
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.87 E-value=1.5e-09 Score=70.43 Aligned_cols=59 Identities=39% Similarity=0.485 Sum_probs=31.9
Q ss_pred CccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEECCCCC
Q 038615 102 NLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNK 160 (274)
Q Consensus 102 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 160 (274)
+|++|++++|+++...+..|..+++|++|++++|.++...|..|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555555554333455555555555555555554444455555555555555554
No 37
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.82 E-value=4.6e-10 Score=101.16 Aligned_cols=126 Identities=29% Similarity=0.418 Sum_probs=77.2
Q ss_pred EEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEECC
Q 038615 78 ITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLP 157 (274)
Q Consensus 78 l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 157 (274)
+..+.+..+.+.. +.. .+..+.+++.|++.+|.+.. +...+..+++|++|++++|.|+.. ..+..++.|+.|+++
T Consensus 74 l~~l~l~~n~i~~-~~~-~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 74 LKELNLRQNLIAK-ILN-HLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLS 148 (414)
T ss_pred HHhhccchhhhhh-hhc-ccccccceeeeeccccchhh-cccchhhhhcchheeccccccccc--cchhhccchhhheec
Confidence 3334445555442 222 36667777777777777763 332256677777777777777643 234556667777777
Q ss_pred CCCCCCCcCCCchhccCCcccceeecccccCCCCCc-hhhcCCCCCCeeecccCcCCC
Q 038615 158 SNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIP-STLGHLTSLLYLDLSSNQLHS 214 (274)
Q Consensus 158 ~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~ls~N~l~~ 214 (274)
+|.+..+.+ +..++.|+.+++++|.+...-+ . ...+.+++.+++.+|.+..
T Consensus 149 ~N~i~~~~~-----~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 149 GNLISDISG-----LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIRE 200 (414)
T ss_pred cCcchhccC-----CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhc
Confidence 777754332 5556777777777777765433 1 3556667777777776543
No 38
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.69 E-value=4e-09 Score=89.39 Aligned_cols=185 Identities=18% Similarity=0.165 Sum_probs=126.1
Q ss_pred CCEEEEEecCCCcccccCc---cccCCCCCccEEEccCCCCCCCC-------------CccCCCCCCCCeeeccCCcCCC
Q 038615 76 GSITHIELVECSIKGELGS---LNFSCFPNLQYLNLWNNNLSGSI-------------PPQIGSLSNLKYLNLRWNNLTG 139 (274)
Q Consensus 76 ~~l~~L~l~~~~l~~~l~~---~~l~~l~~L~~L~l~~n~l~~~~-------------p~~l~~l~~L~~L~L~~n~l~~ 139 (274)
++++.|+|++|.+....++ ..+.....|++|++.+|.+...- -...+.-+.|+++...+|++..
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN 171 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence 4889999999988633222 13566788999999999875211 1123455788999999998863
Q ss_pred c----cchhccCCCCCcEEECCCCCCCCCcC-CCchhccCCcccceeecccccCCCC----CchhhcCCCCCCeeecccC
Q 038615 140 T----IPTEIGIFRNLEELYLPSNKLNGFNG-TIPREIGNLKNLTHLSLITNKRTGA----IPSTLGHLTSLLYLDLSSN 210 (274)
Q Consensus 140 ~----~p~~~~~l~~L~~L~L~~n~l~~~~~-~lp~~l~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~ls~N 210 (274)
. +...+...+.|+.+.+.+|.+..-.. .+...+..+++|+.|++.+|.|+.. +...+..++.|+.|++++|
T Consensus 172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC 251 (382)
T ss_pred ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence 2 23346667889999999998852111 1234567889999999999988753 3345667788999999999
Q ss_pred cCCCCCchhc-----cCCCCCCEEEccCCccCcccccC----ccccccccCCccCCccc
Q 038615 211 QLHSFIPLEI-----GNFSALEELDLSDNKIRALQIIQ----PSISQSFIKPTFRPNTF 260 (274)
Q Consensus 211 ~l~~~~p~~l-----~~l~~L~~L~l~~N~l~~~~~~~----~~~~~~~~~~~~~~~~~ 260 (274)
.+...-...+ ...++|+.|++.+|.++...... -.-...+..+.+.+|++
T Consensus 252 ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 252 LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 8875433222 24678999999999987543211 11144667778888888
No 39
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.69 E-value=7.8e-10 Score=101.60 Aligned_cols=130 Identities=26% Similarity=0.318 Sum_probs=83.6
Q ss_pred CCCeeeccCCcCCCccchhccCCCCCcEEECCCCCCCCCcCCCchhccCCcccceeecccccCCCCCchhhcCCCCCCee
Q 038615 126 NLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYL 205 (274)
Q Consensus 126 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 205 (274)
.|.+.+.++|.+. .+..++.-++.|+.|+|++|+++.. ..+..+++|++|||+.|.+.. +|..-..-..|+.|
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v-----~~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc~L~~L 237 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV-----DNLRRLPKLKHLDLSYNCLRH-VPQLSMVGCKLQLL 237 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh-----HHHHhcccccccccccchhcc-ccccchhhhhheee
Confidence 4666677777776 6666677777778888888877522 356777778888888877763 33321111237777
Q ss_pred ecccCcCCCCCchhccCCCCCCEEEccCCccCcccccCc-cccccccCCccCCccccCCC
Q 038615 206 DLSSNQLHSFIPLEIGNFSALEELDLSDNKIRALQIIQP-SISQSFIKPTFRPNTFCNWK 264 (274)
Q Consensus 206 ~ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 264 (274)
.+++|.++.. ..+.++.+|+.||+++|-|.+.....+ .....++.+.+.||.+|..|
T Consensus 238 ~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 238 NLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred eecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 8888877643 345677777788888887776654333 22334566677777776554
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.67 E-value=3.4e-09 Score=95.48 Aligned_cols=158 Identities=28% Similarity=0.376 Sum_probs=117.1
Q ss_pred CCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEECCCCCCCCCcCCCchhccCCcc
Q 038615 98 SCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKN 177 (274)
Q Consensus 98 ~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~lp~~l~~l~~ 177 (274)
..+..++.+.+..|.+.. +-..+..+.+|+.|++..|.+. .+...+..+++|++|++++|.|+.+.+ +..++.
T Consensus 69 ~~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~~-----l~~l~~ 141 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLEG-----LSTLTL 141 (414)
T ss_pred HHhHhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccccc-----hhhccc
Confidence 356777888888888873 3345788899999999999998 444447789999999999999976554 777788
Q ss_pred cceeecccccCCCCCchhhcCCCCCCeeecccCcCCCCCc-hhccCCCCCCEEEccCCccCcccccCccccccccCCccC
Q 038615 178 LTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIP-LEIGNFSALEELDLSDNKIRALQIIQPSISQSFIKPTFR 256 (274)
Q Consensus 178 L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p-~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~ 256 (274)
|+.|++.+|.+... ..+..+++|+.+++++|.++..-+ . ...+.+++.+++.+|.+....... ....+...++.
T Consensus 142 L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~--~~~~l~~~~l~ 216 (414)
T KOG0531|consen 142 LKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGLD--LLKKLVLLSLL 216 (414)
T ss_pred hhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccchH--HHHHHHHhhcc
Confidence 99999999999753 345568899999999999987544 2 467788889999999887664322 22223333555
Q ss_pred CccccCCCCCc
Q 038615 257 PNTFCNWKTLQ 267 (274)
Q Consensus 257 ~~~~~~~~~l~ 267 (274)
.|++..+.++.
T Consensus 217 ~n~i~~~~~l~ 227 (414)
T KOG0531|consen 217 DNKISKLEGLN 227 (414)
T ss_pred cccceeccCcc
Confidence 55555555443
No 41
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.64 E-value=3.7e-08 Score=59.01 Aligned_cols=40 Identities=28% Similarity=0.336 Sum_probs=29.8
Q ss_pred hhHHHHHHHHHHHhcCCCCCCCCCCCCC--CCCcccceeeeC
Q 038615 34 SIHVAASEIERQALLNGGWWKDRIPHNT--SDHCNWVGITCD 73 (274)
Q Consensus 34 ~~~~~~l~~~~~~l~~~~~~~~~~w~~~--~~~c~w~gv~c~ 73 (274)
..|++||++||+++.++....+.+|+.. .++|+|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcCCCCCeeeccEEeC
Confidence 4689999999999985333689999985 799999999996
No 42
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.59 E-value=6.8e-10 Score=101.99 Aligned_cols=127 Identities=28% Similarity=0.331 Sum_probs=93.0
Q ss_pred CEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEEC
Q 038615 77 SITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYL 156 (274)
Q Consensus 77 ~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 156 (274)
.+...+++.|.+. .+.. ++.-++.+++|+|++|+++.. ..+..+++|++|||++|.+. .+|..-..-.+|+.|.+
T Consensus 165 ~L~~a~fsyN~L~-~mD~-SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDE-SLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNL 239 (1096)
T ss_pred hHhhhhcchhhHH-hHHH-HHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhhheeeee
Confidence 3455666777776 4444 677788899999999998743 36788899999999999998 66653222235999999
Q ss_pred CCCCCCCCcCCCchhccCCcccceeecccccCCCCC-chhhcCCCCCCeeecccCcCC
Q 038615 157 PSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAI-PSTLGHLTSLLYLDLSSNQLH 213 (274)
Q Consensus 157 ~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~-p~~l~~l~~L~~L~ls~N~l~ 213 (274)
++|.++++.| +.++.+|+.||++.|-+.+.- -..+..+..|+.|+|.+|.+-
T Consensus 240 rnN~l~tL~g-----ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 240 RNNALTTLRG-----IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cccHHHhhhh-----HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 9998865444 788889999999999776531 123455677888899988764
No 43
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.50 E-value=4.7e-08 Score=83.02 Aligned_cols=166 Identities=19% Similarity=0.200 Sum_probs=113.0
Q ss_pred ccCCCCCccEEEccCCCCCCCCCc----cCCCCCCCCeeeccCCcCCCc-------------cchhccCCCCCcEEECCC
Q 038615 96 NFSCFPNLQYLNLWNNNLSGSIPP----QIGSLSNLKYLNLRWNNLTGT-------------IPTEIGIFRNLEELYLPS 158 (274)
Q Consensus 96 ~l~~l~~L~~L~l~~n~l~~~~p~----~l~~l~~L~~L~L~~n~l~~~-------------~p~~~~~l~~L~~L~L~~ 158 (274)
.+...+.|++|+||+|.|...-+. -+.++..|++|.|.+|.+.-. ..+..+.-++|+.+..++
T Consensus 87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r 166 (382)
T KOG1909|consen 87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR 166 (382)
T ss_pred HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence 345667899999999988643332 245678899999999988621 112234557899999999
Q ss_pred CCCCCCcC-CCchhccCCcccceeecccccCCCC----CchhhcCCCCCCeeecccCcCCCC----CchhccCCCCCCEE
Q 038615 159 NKLNGFNG-TIPREIGNLKNLTHLSLITNKRTGA----IPSTLGHLTSLLYLDLSSNQLHSF----IPLEIGNFSALEEL 229 (274)
Q Consensus 159 n~l~~~~~-~lp~~l~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~ls~N~l~~~----~p~~l~~l~~L~~L 229 (274)
|++..... .+...++..+.|+.+.+..|.+... +...+..++.|++||+.+|.++.. +.+.+..+++|+.|
T Consensus 167 Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El 246 (382)
T KOG1909|consen 167 NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLREL 246 (382)
T ss_pred cccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheee
Confidence 98852111 1334467778999999999987532 234567889999999999998754 34667788999999
Q ss_pred EccCCccCcccc--cCccccc---cccCCccCCcccc
Q 038615 230 DLSDNKIRALQI--IQPSISQ---SFIKPTFRPNTFC 261 (274)
Q Consensus 230 ~l~~N~l~~~~~--~~~~~~~---~~~~~~~~~~~~~ 261 (274)
++++|.++.-.. +..++.. .+..+.+.+|.|.
T Consensus 247 ~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 247 NLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred cccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence 999999975432 2222222 3444456666553
No 44
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.45 E-value=1.9e-07 Score=90.69 Aligned_cols=148 Identities=30% Similarity=0.391 Sum_probs=91.5
Q ss_pred CEEEEEecCCCcccccCccccCCCCCccEEEccCCC--CCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEE
Q 038615 77 SITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNN--LSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEEL 154 (274)
Q Consensus 77 ~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~--l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 154 (274)
.++++.+-++.+. .++. . ...+.|++|-+..|. +.......|..++.|++|||++|.=-+.+|..++.+-+|++|
T Consensus 524 ~~rr~s~~~~~~~-~~~~-~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 524 SVRRMSLMNNKIE-HIAG-S-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred heeEEEEeccchh-hccC-C-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 4455555555554 2222 1 123367777777775 332333346677778888887766556777778778888888
Q ss_pred ECCCCCCCCCcCCCchhccCCcccceeecccccCCCCCchhhcCCCCCCeeecccCc--CCCCCchhccCCCCCCEEEc
Q 038615 155 YLPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQ--LHSFIPLEIGNFSALEELDL 231 (274)
Q Consensus 155 ~L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~--l~~~~p~~l~~l~~L~~L~l 231 (274)
++++..+. .+|..++++..|.+|++..+.....+|.....+.+|++|.+..-. .+...-..+.++.+|+.+..
T Consensus 601 ~L~~t~I~----~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 601 DLSDTGIS----HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred cccCCCcc----ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 88777773 567777777788888877776655556666667777777775543 22222233444455554444
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.37 E-value=1.2e-07 Score=79.08 Aligned_cols=161 Identities=24% Similarity=0.301 Sum_probs=99.8
Q ss_pred CEEEEEecCCCccc--ccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCc-cchhccCCCCCcE
Q 038615 77 SITHIELVECSIKG--ELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGT-IPTEIGIFRNLEE 153 (274)
Q Consensus 77 ~l~~L~l~~~~l~~--~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~ 153 (274)
+|++++|.+|.++. ++.. .+.++|.|++|+++.|++...+...-....+|++|.|.+..+... ....+..+|.+++
T Consensus 72 ~v~elDL~~N~iSdWseI~~-ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 72 DVKELDLTGNLISDWSEIGA-ILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhcccchhccHHHHHH-HHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 68888888888862 3444 567888888888888888754433324567888888888777643 2344567788888
Q ss_pred EECCCCCCCCCcC--C-Cch------hcc-----------------CCcccceeecccccCCCC-CchhhcCCCCCCeee
Q 038615 154 LYLPSNKLNGFNG--T-IPR------EIG-----------------NLKNLTHLSLITNKRTGA-IPSTLGHLTSLLYLD 206 (274)
Q Consensus 154 L~L~~n~l~~~~~--~-lp~------~l~-----------------~l~~L~~L~l~~n~l~~~-~p~~l~~l~~L~~L~ 206 (274)
|+++.|++..+.- . +.+ .+. ..|++..+-+..|.+... -.+....++.+..|+
T Consensus 151 lHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~Ln 230 (418)
T KOG2982|consen 151 LHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLN 230 (418)
T ss_pred hhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhh
Confidence 8888884421110 0 000 011 123344444444433221 112234556777888
Q ss_pred cccCcCCCCC-chhccCCCCCCEEEccCCccCc
Q 038615 207 LSSNQLHSFI-PLEIGNFSALEELDLSDNKIRA 238 (274)
Q Consensus 207 ls~N~l~~~~-p~~l~~l~~L~~L~l~~N~l~~ 238 (274)
++.|+|..+- -+.+.++++|+.|.+..|++..
T Consensus 231 L~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 231 LGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred hcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 8888887654 2677888888888888888754
No 46
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.36 E-value=6e-07 Score=53.87 Aligned_cols=41 Identities=41% Similarity=0.609 Sum_probs=30.4
Q ss_pred CCCCeeecccCcCCCCCchhccCCCCCCEEEccCCccCcccc
Q 038615 200 TSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKIRALQI 241 (274)
Q Consensus 200 ~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~ 241 (274)
++|++|++++|+|+. +|..+.++++|++|++++|+|+.+.+
T Consensus 1 ~~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCCCCcC
Confidence 467888888888886 56568888888888888888886643
No 47
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.27 E-value=2.3e-08 Score=74.23 Aligned_cols=105 Identities=26% Similarity=0.376 Sum_probs=50.8
Q ss_pred EEEEEecCCCcccccCc--cccCCCCCccEEEccCCCCCCCCCccCC-CCCCCCeeeccCCcCCCccchhccCCCCCcEE
Q 038615 78 ITHIELVECSIKGELGS--LNFSCFPNLQYLNLWNNNLSGSIPPQIG-SLSNLKYLNLRWNNLTGTIPTEIGIFRNLEEL 154 (274)
Q Consensus 78 l~~L~l~~~~l~~~l~~--~~l~~l~~L~~L~l~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 154 (274)
.-.++|++|.+. .+++ ..+....+|+..++++|.+.. .|+.|. .++.+++|++++|.++ .+|..+..++.|+.|
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 344555555543 2222 023444555555666666552 333332 3345555555555555 455555555555555
Q ss_pred ECCCCCCCCCcCCCchhccCCcccceeecccccCC
Q 038615 155 YLPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRT 189 (274)
Q Consensus 155 ~L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~ 189 (274)
+++.|.+. ..|..+..+.++..|+..+|.+.
T Consensus 106 Nl~~N~l~----~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 106 NLRFNPLN----AEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred ccccCccc----cchHHHHHHHhHHHhcCCCCccc
Confidence 55555552 22333333445555555544443
No 48
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.27 E-value=1.4e-06 Score=68.88 Aligned_cols=105 Identities=24% Similarity=0.274 Sum_probs=70.2
Q ss_pred CCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEECCCCCCCCCcCCCchhccCCcccce
Q 038615 101 PNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTH 180 (274)
Q Consensus 101 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~lp~~l~~l~~L~~ 180 (274)
.+...+||++|.+.. -..|..++.|.+|.+.+|+|+..-|.--..+++|+.|.+.+|+++++. ++ ..+..+|+|++
T Consensus 42 d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~-dl-~pLa~~p~L~~ 117 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELG-DL-DPLASCPKLEY 117 (233)
T ss_pred cccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhh-hc-chhccCCccce
Confidence 346677888887752 235677788888888888888554444445577888888888887543 23 23667778888
Q ss_pred eecccccCCCCC---chhhcCCCCCCeeeccc
Q 038615 181 LSLITNKRTGAI---PSTLGHLTSLLYLDLSS 209 (274)
Q Consensus 181 L~l~~n~l~~~~---p~~l~~l~~L~~L~ls~ 209 (274)
|.+-+|.....- -..+..+++|+.||++.
T Consensus 118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 888887765321 12345677788877765
No 49
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.21 E-value=1.6e-06 Score=84.50 Aligned_cols=133 Identities=26% Similarity=0.330 Sum_probs=107.2
Q ss_pred cCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCc--CCCccchhccCCCCCcEEECCCCCCCCCcCCCchhccC
Q 038615 97 FSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNN--LTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGN 174 (274)
Q Consensus 97 l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~--l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~lp~~l~~ 174 (274)
.......+.+.+-+|.+. .++.. ...+.|++|-+..|. +.....+.|..++.|+.||+++|.- -+.+|..++.
T Consensus 519 ~~~~~~~rr~s~~~~~~~-~~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~---l~~LP~~I~~ 593 (889)
T KOG4658|consen 519 VKSWNSVRRMSLMNNKIE-HIAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSS---LSKLPSSIGE 593 (889)
T ss_pred ccchhheeEEEEeccchh-hccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCc---cCcCChHHhh
Confidence 344567788888888876 33433 234579999999886 4433345578899999999999765 5689999999
Q ss_pred CcccceeecccccCCCCCchhhcCCCCCCeeecccCcCCCCCchhccCCCCCCEEEccCCc
Q 038615 175 LKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNK 235 (274)
Q Consensus 175 l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N~ 235 (274)
+-+|++|++++..+. .+|..++++..|.+|++..+.....+|.....+++|++|.+..-.
T Consensus 594 Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 594 LVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred hhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 999999999999988 789999999999999999988766667777779999999987776
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.15 E-value=2.4e-06 Score=51.21 Aligned_cols=36 Identities=39% Similarity=0.595 Sum_probs=19.7
Q ss_pred CCCeeeccCCcCCCccchhccCCCCCcEEECCCCCCC
Q 038615 126 NLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLN 162 (274)
Q Consensus 126 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 162 (274)
+|++|++++|+++ .+|..++.+++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4556666666665 44545556666666666666553
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.10 E-value=1.5e-06 Score=82.63 Aligned_cols=135 Identities=24% Similarity=0.212 Sum_probs=94.7
Q ss_pred CCccEEEccCCCCC-CCCCccC-CCCCCCCeeeccCCcCCCc-cchhccCCCCCcEEECCCCCCCCCcCCCchhccCCcc
Q 038615 101 PNLQYLNLWNNNLS-GSIPPQI-GSLSNLKYLNLRWNNLTGT-IPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKN 177 (274)
Q Consensus 101 ~~L~~L~l~~n~l~-~~~p~~l-~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~lp~~l~~l~~ 177 (274)
.+|++|++++...- ..-|..+ ..+|+|+.|.+.+-.+... ......++++|..||+++.+++.+. +++++++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~-----GIS~Lkn 196 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLS-----GISRLKN 196 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcH-----HHhcccc
Confidence 46888888876432 1122223 3578999999988776522 2233467899999999999997554 4889999
Q ss_pred cceeecccccCCC-CCchhhcCCCCCCeeecccCcCCCCC--c----hhccCCCCCCEEEccCCccCccc
Q 038615 178 LTHLSLITNKRTG-AIPSTLGHLTSLLYLDLSSNQLHSFI--P----LEIGNFSALEELDLSDNKIRALQ 240 (274)
Q Consensus 178 L~~L~l~~n~l~~-~~p~~l~~l~~L~~L~ls~N~l~~~~--p----~~l~~l~~L~~L~l~~N~l~~~~ 240 (274)
|+.|.+.+-.+.. ..-..+.++++|+.||+|........ . +.-..+|+|+.||.+++.+.+..
T Consensus 197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~ 266 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEI 266 (699)
T ss_pred HHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHH
Confidence 9999888876653 23345678999999999987654321 1 22345789999999988887653
No 52
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.08 E-value=3.9e-07 Score=67.82 Aligned_cols=85 Identities=31% Similarity=0.422 Sum_probs=73.7
Q ss_pred CCCEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEE
Q 038615 75 KGSITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEEL 154 (274)
Q Consensus 75 ~~~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 154 (274)
..+++.+++++|.+. .+|...-..++.++.|++.+|.+. .+|..+..++.|+.|+++.|.+. ..|..+..+.++..|
T Consensus 52 ~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 52 GYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDML 128 (177)
T ss_pred CceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHh
Confidence 457899999999998 566634456779999999999998 68989999999999999999998 778888789999999
Q ss_pred ECCCCCCC
Q 038615 155 YLPSNKLN 162 (274)
Q Consensus 155 ~L~~n~l~ 162 (274)
+...|.+.
T Consensus 129 ds~~na~~ 136 (177)
T KOG4579|consen 129 DSPENARA 136 (177)
T ss_pred cCCCCccc
Confidence 99999874
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.92 E-value=8.6e-06 Score=67.49 Aligned_cols=140 Identities=25% Similarity=0.248 Sum_probs=90.5
Q ss_pred ccCCCCCccEEEccCCCCCCCCCc----cCCCCCCCCeeeccCCcCCCccch--------------hccCCCCCcEEECC
Q 038615 96 NFSCFPNLQYLNLWNNNLSGSIPP----QIGSLSNLKYLNLRWNNLTGTIPT--------------EIGIFRNLEELYLP 157 (274)
Q Consensus 96 ~l~~l~~L~~L~l~~n~l~~~~p~----~l~~l~~L~~L~L~~n~l~~~~p~--------------~~~~l~~L~~L~L~ 157 (274)
.+.++++|+..+|++|.|....|+ .+++-+.|++|.+++|.+. .+.. -...-|.|+.+...
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 467788899999999988755554 3566778889999888875 2211 12345788888888
Q ss_pred CCCCCCCcCCC---chhccCCcccceeecccccCCCCCc-----hhhcCCCCCCeeecccCcCCCC----CchhccCCCC
Q 038615 158 SNKLNGFNGTI---PREIGNLKNLTHLSLITNKRTGAIP-----STLGHLTSLLYLDLSSNQLHSF----IPLEIGNFSA 225 (274)
Q Consensus 158 ~n~l~~~~~~l---p~~l~~l~~L~~L~l~~n~l~~~~p-----~~l~~l~~L~~L~ls~N~l~~~----~p~~l~~l~~ 225 (274)
+|++. +|+. ...+..-.+|+++.+..|.+...-. ..+..+.+|+.||+++|.++-. +...+..|+.
T Consensus 166 rNRle--ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~ 243 (388)
T COG5238 166 RNRLE--NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNL 243 (388)
T ss_pred cchhc--cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccch
Confidence 88886 3321 1123334567778887777653211 1234567788888888877643 2344556677
Q ss_pred CCEEEccCCccCc
Q 038615 226 LEELDLSDNKIRA 238 (274)
Q Consensus 226 L~~L~l~~N~l~~ 238 (274)
|+.|.+..|-++.
T Consensus 244 lrEL~lnDClls~ 256 (388)
T COG5238 244 LRELRLNDCLLSN 256 (388)
T ss_pred hhhccccchhhcc
Confidence 7777777777654
No 54
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.92 E-value=9.9e-06 Score=67.14 Aligned_cols=163 Identities=20% Similarity=0.196 Sum_probs=115.3
Q ss_pred CCEEEEEecCCCcccc----cCccccCCCCCccEEEccCCCCC---CCCC-------ccCCCCCCCCeeeccCCcCCCcc
Q 038615 76 GSITHIELVECSIKGE----LGSLNFSCFPNLQYLNLWNNNLS---GSIP-------PQIGSLSNLKYLNLRWNNLTGTI 141 (274)
Q Consensus 76 ~~l~~L~l~~~~l~~~----l~~~~l~~l~~L~~L~l~~n~l~---~~~p-------~~l~~l~~L~~L~L~~n~l~~~~ 141 (274)
..++.++|++|.+... +.. .+++-.+|+..+++.-... ..++ +.+.++++|+..+||.|.|....
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~-~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCN-VIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHH-HHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 4788999999998743 444 6777788888888875432 1222 24567899999999999998666
Q ss_pred chh----ccCCCCCcEEECCCCCCCCCcCC-Cc---------hhccCCcccceeecccccCCCCCch----hhcCCCCCC
Q 038615 142 PTE----IGIFRNLEELYLPSNKLNGFNGT-IP---------REIGNLKNLTHLSLITNKRTGAIPS----TLGHLTSLL 203 (274)
Q Consensus 142 p~~----~~~l~~L~~L~L~~n~l~~~~~~-lp---------~~l~~l~~L~~L~l~~n~l~~~~p~----~l~~l~~L~ 203 (274)
|+. ++..+.|++|.+++|.+..+.|. +- ....+-|.|+.+....|++-..... .+..-..|+
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk 188 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK 188 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence 654 56678999999999998654442 21 1234567899999999998642211 122235789
Q ss_pred eeecccCcCCCCC-----chhccCCCCCCEEEccCCccCcc
Q 038615 204 YLDLSSNQLHSFI-----PLEIGNFSALEELDLSDNKIRAL 239 (274)
Q Consensus 204 ~L~ls~N~l~~~~-----p~~l~~l~~L~~L~l~~N~l~~~ 239 (274)
.+.+..|.|...- -..+..+.+|+.||++.|-++-.
T Consensus 189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~ 229 (388)
T COG5238 189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLE 229 (388)
T ss_pred eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhh
Confidence 9999999986431 12234678999999999998754
No 55
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=3.3e-07 Score=76.59 Aligned_cols=156 Identities=24% Similarity=0.209 Sum_probs=86.3
Q ss_pred CCEEEEEecCCCcccc-cCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCC-cCCCc-cchhccCCCCCc
Q 038615 76 GSITHIELVECSIKGE-LGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWN-NLTGT-IPTEIGIFRNLE 152 (274)
Q Consensus 76 ~~l~~L~l~~~~l~~~-l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~-~p~~~~~l~~L~ 152 (274)
.|++.+||+...++-. +-. .+..+..|+.|.+.++++.+.+...+++-.+|+.|+|+.+ .++.- +.-.+..++.|.
T Consensus 185 sRlq~lDLS~s~it~stl~~-iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHG-ILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhhHHhhcchhheeHHHHHH-HHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHh
Confidence 3688888888777521 222 4556777777888888877766666777777777777754 33311 112245666666
Q ss_pred EEECCCCCCCC--------------------------CcCCCchhccCCcccceeeccccc-CCCCCchhhcCCCCCCee
Q 038615 153 ELYLPSNKLNG--------------------------FNGTIPREIGNLKNLTHLSLITNK-RTGAIPSTLGHLTSLLYL 205 (274)
Q Consensus 153 ~L~L~~n~l~~--------------------------~~~~lp~~l~~l~~L~~L~l~~n~-l~~~~p~~l~~l~~L~~L 205 (274)
+|+++.+.+.. ....+......+++|.+|||++|. ++...-..+.+++.|++|
T Consensus 264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l 343 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL 343 (419)
T ss_pred hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence 66666665421 000111112345566666666553 222222344556666666
Q ss_pred ecccCcCCCCCch---hccCCCCCCEEEccCC
Q 038615 206 DLSSNQLHSFIPL---EIGNFSALEELDLSDN 234 (274)
Q Consensus 206 ~ls~N~l~~~~p~---~l~~l~~L~~L~l~~N 234 (274)
.++.|.. .+|. .++..|+|.+||+.++
T Consensus 344 SlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 344 SLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred ehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 6666543 1332 3445566666666554
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.88 E-value=5.5e-05 Score=67.10 Aligned_cols=133 Identities=19% Similarity=0.290 Sum_probs=74.6
Q ss_pred CCEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCC-cCCCccchhccCCCCCcEE
Q 038615 76 GSITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWN-NLTGTIPTEIGIFRNLEEL 154 (274)
Q Consensus 76 ~~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~~~~l~~L~~L 154 (274)
..++.|++++|.+. .+|. -.++|++|.++++.--..+|..+. ++|++|++++| .+. .+|. +|+.|
T Consensus 52 ~~l~~L~Is~c~L~-sLP~----LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sLe~L 117 (426)
T PRK15386 52 RASGRLYIKDCDIE-SLPV----LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------SVRSL 117 (426)
T ss_pred cCCCEEEeCCCCCc-ccCC----CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc------ccceE
Confidence 35678999988776 4542 123589999987543235565442 57899999887 444 4443 57777
Q ss_pred ECCCCCCCCCcCCCchhccCCcccceeecccccCC--CCCchhhcCC-CCCCeeecccCcCCCCCchhccCCCCCCEEEc
Q 038615 155 YLPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRT--GAIPSTLGHL-TSLLYLDLSSNQLHSFIPLEIGNFSALEELDL 231 (274)
Q Consensus 155 ~L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~--~~~p~~l~~l-~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l 231 (274)
++..+....+ +.+|. +|+.|.+.+++.. ..+|. .+ ++|++|++++|.... .|+.+. .+|+.|++
T Consensus 118 ~L~~n~~~~L-~~LPs------sLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i~-LP~~LP--~SLk~L~l 184 (426)
T PRK15386 118 EIKGSATDSI-KNVPN------GLTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNII-LPEKLP--ESLQSITL 184 (426)
T ss_pred EeCCCCCccc-ccCcc------hHhheecccccccccccccc---ccCCcccEEEecCCCccc-Cccccc--ccCcEEEe
Confidence 7776655322 23443 3455555332211 01111 12 467777777766442 333332 36677776
Q ss_pred cCCc
Q 038615 232 SDNK 235 (274)
Q Consensus 232 ~~N~ 235 (274)
+.|.
T Consensus 185 s~n~ 188 (426)
T PRK15386 185 HIEQ 188 (426)
T ss_pred cccc
Confidence 6653
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.83 E-value=0.0001 Score=65.43 Aligned_cols=136 Identities=18% Similarity=0.216 Sum_probs=83.3
Q ss_pred cCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEECCCC-CCCCCcCCCchhccCC
Q 038615 97 FSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSN-KLNGFNGTIPREIGNL 175 (274)
Q Consensus 97 l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n-~l~~~~~~lp~~l~~l 175 (274)
+..+.+++.|++++|.++ .+|. + ..+|++|.++++.--..+|..+ .++|++|++++| .+. .+|.
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~----sLP~----- 112 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS----GLPE----- 112 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc----cccc-----
Confidence 334588999999999887 5562 2 2369999998744333667644 358999999988 442 4453
Q ss_pred cccceeecccccCCCCCchhhcCC-CCCCeeecccCc-CCC-CCchhccCCCCCCEEEccCCccCcccccCccccccccC
Q 038615 176 KNLTHLSLITNKRTGAIPSTLGHL-TSLLYLDLSSNQ-LHS-FIPLEIGNFSALEELDLSDNKIRALQIIQPSISQSFIK 252 (274)
Q Consensus 176 ~~L~~L~l~~n~l~~~~p~~l~~l-~~L~~L~ls~N~-l~~-~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~ 252 (274)
.|+.|++..+.... +..+ ++|+.|.+.++. ... .+|..+. ++|++|++++|.....+ ..+..++..
T Consensus 113 -sLe~L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~LP--sSLk~L~Is~c~~i~LP---~~LP~SLk~ 181 (426)
T PRK15386 113 -SVRSLEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDNLIS--PSLKTLSLTGCSNIILP---EKLPESLQS 181 (426)
T ss_pred -ccceEEeCCCCCcc-----cccCcchHhheeccccccccccccccccC--CcccEEEecCCCcccCc---ccccccCcE
Confidence 47777777665431 2222 356777775432 211 1221111 58999999999865433 234456666
Q ss_pred CccCCc
Q 038615 253 PTFRPN 258 (274)
Q Consensus 253 ~~~~~~ 258 (274)
++++.+
T Consensus 182 L~ls~n 187 (426)
T PRK15386 182 ITLHIE 187 (426)
T ss_pred EEeccc
Confidence 665444
No 58
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=2.5e-07 Score=77.37 Aligned_cols=156 Identities=24% Similarity=0.209 Sum_probs=102.5
Q ss_pred CEEEEEecCCCcccc-cCccccCCC-CCccEEEccCCCCCCC-CCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcE
Q 038615 77 SITHIELVECSIKGE-LGSLNFSCF-PNLQYLNLWNNNLSGS-IPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEE 153 (274)
Q Consensus 77 ~l~~L~l~~~~l~~~-l~~~~l~~l-~~L~~L~l~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 153 (274)
.|..+.+....+... +.. .+.-+ +.|++|||+...++.. ...-++++.+|+.|.|.++++.+.+-..+.+-.+|+.
T Consensus 160 gV~v~Rlar~~~~~prlae-~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~ 238 (419)
T KOG2120|consen 160 GVIVFRLARSFMDQPRLAE-HFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVR 238 (419)
T ss_pred CeEEEEcchhhhcCchhhh-hhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhcccccee
Confidence 466666664443322 323 33333 3599999999888732 2334577889999999999999888888888899999
Q ss_pred EECCCCC-CCCCcCCCchhccCCcccceeecccccCCCCCchh-----------------------------hcCCCCCC
Q 038615 154 LYLPSNK-LNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPST-----------------------------LGHLTSLL 203 (274)
Q Consensus 154 L~L~~n~-l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~-----------------------------l~~l~~L~ 203 (274)
|+++.+. ++.. .+.-.+.+++.|.+|+++.+.+....... ...+++|.
T Consensus 239 lnlsm~sG~t~n--~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~ 316 (419)
T KOG2120|consen 239 LNLSMCSGFTEN--ALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLV 316 (419)
T ss_pred eccccccccchh--HHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCcee
Confidence 9999863 4311 22233678888889998888765422111 12456677
Q ss_pred eeecccCc-CCCCCchhccCCCCCCEEEccCCc
Q 038615 204 YLDLSSNQ-LHSFIPLEIGNFSALEELDLSDNK 235 (274)
Q Consensus 204 ~L~ls~N~-l~~~~p~~l~~l~~L~~L~l~~N~ 235 (274)
+||+++|- ++......|.+++-|++|.++.|.
T Consensus 317 ~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 317 HLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY 349 (419)
T ss_pred eeccccccccCchHHHHHHhcchheeeehhhhc
Confidence 77777654 444344556666777777776664
No 59
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.82 E-value=2.6e-05 Score=61.88 Aligned_cols=109 Identities=25% Similarity=0.233 Sum_probs=80.9
Q ss_pred CEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCcc-chhccCCCCCcEEE
Q 038615 77 SITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTI-PTEIGIFRNLEELY 155 (274)
Q Consensus 77 ~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~ 155 (274)
....+||++|++. .++ .|..++.|.+|.+.+|+|+..-|.--..+++|+.|.|.+|.+.... -..+..+++|++|.
T Consensus 43 ~~d~iDLtdNdl~-~l~--~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDNDLR-KLD--NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceecccccchh-hcc--cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 4567999999987 333 4778899999999999999655554456788999999999987221 12356789999999
Q ss_pred CCCCCCCCCcCCCchhccCCcccceeecccccC
Q 038615 156 LPSNKLNGFNGTIPREIGNLKNLTHLSLITNKR 188 (274)
Q Consensus 156 L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l 188 (274)
+-+|.++...+-=-.-+..+|+|+.||+++-..
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 999988532221112367789999999987544
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.68 E-value=7.7e-06 Score=77.79 Aligned_cols=151 Identities=17% Similarity=0.230 Sum_probs=100.2
Q ss_pred CCEEEEEecCCCcccc-cCccccCCCCCccEEEccCCCCCCC-CCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcE
Q 038615 76 GSITHIELVECSIKGE-LGSLNFSCFPNLQYLNLWNNNLSGS-IPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEE 153 (274)
Q Consensus 76 ~~l~~L~l~~~~l~~~-l~~~~l~~l~~L~~L~l~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 153 (274)
.++++|++++...-.. -+...-..||+|+.|.+.+-.+... ......++++|+.||+|+++++.. ..++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 3677788877544311 1111234578999999998776532 233456788999999999998843 67888999999
Q ss_pred EECCCCCCCCCcCCCchhccCCcccceeecccccCCCCC--c----hhhcCCCCCCeeecccCcCCCCCch-hccCCCCC
Q 038615 154 LYLPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAI--P----STLGHLTSLLYLDLSSNQLHSFIPL-EIGNFSAL 226 (274)
Q Consensus 154 L~L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~--p----~~l~~l~~L~~L~ls~N~l~~~~p~-~l~~l~~L 226 (274)
|.+.+=.+. +...-..+.++++|+.||+|........ . +.-..+|.|+.||.|++.+++.+-+ .+...++|
T Consensus 200 L~mrnLe~e--~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L 277 (699)
T KOG3665|consen 200 LSMRNLEFE--SYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNL 277 (699)
T ss_pred HhccCCCCC--chhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccH
Confidence 988877775 2222345778999999999987665322 1 1224578999999999888765432 23334455
Q ss_pred CEEE
Q 038615 227 EELD 230 (274)
Q Consensus 227 ~~L~ 230 (274)
+.+-
T Consensus 278 ~~i~ 281 (699)
T KOG3665|consen 278 QQIA 281 (699)
T ss_pred hhhh
Confidence 5443
No 61
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.68 E-value=6.2e-06 Score=69.12 Aligned_cols=108 Identities=25% Similarity=0.234 Sum_probs=64.0
Q ss_pred CCccEEEccCCCCCCC-CCccC-CCCCCCCeeeccCCcCCC--ccchhccCCCCCcEEECCCCCCCCCcCCCchhccCCc
Q 038615 101 PNLQYLNLWNNNLSGS-IPPQI-GSLSNLKYLNLRWNNLTG--TIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLK 176 (274)
Q Consensus 101 ~~L~~L~l~~n~l~~~-~p~~l-~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~~~lp~~l~~l~ 176 (274)
..++.|.+.++.+... ....| +....++.+||.+|.+++ .+-..+..+|.|++|+++.|.+...-+.+| ....
T Consensus 45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~~ 121 (418)
T KOG2982|consen 45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPLK 121 (418)
T ss_pred cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---cccc
Confidence 3444555555555321 01112 234567888888888762 223335577888888888888754334444 2445
Q ss_pred ccceeecccccCCCC-CchhhcCCCCCCeeecccCc
Q 038615 177 NLTHLSLITNKRTGA-IPSTLGHLTSLLYLDLSSNQ 211 (274)
Q Consensus 177 ~L~~L~l~~n~l~~~-~p~~l~~l~~L~~L~ls~N~ 211 (274)
+|+.|.|.+..+... ....+..+|.++.|++|.|.
T Consensus 122 nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~ 157 (418)
T KOG2982|consen 122 NLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNS 157 (418)
T ss_pred ceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccch
Confidence 777888877776542 22345667777777777774
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.66 E-value=2.3e-05 Score=64.48 Aligned_cols=106 Identities=30% Similarity=0.350 Sum_probs=60.2
Q ss_pred CCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCC--cCCCccchhccCCCCCcEEECCCCCCCCCcCCCchhccCC
Q 038615 98 SCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWN--NLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNL 175 (274)
Q Consensus 98 ~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n--~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~lp~~l~~l 175 (274)
..+..|+.|++.+..++. -..+..+++|++|.++.| ++.+.++.....+++|+++++++|+++.+. ++ ..+..+
T Consensus 40 d~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~ls-tl-~pl~~l 115 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLS-TL-RPLKEL 115 (260)
T ss_pred ccccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccc-cc-chhhhh
Confidence 334455555555555541 124556677777777777 445445544555677777777777775322 22 225566
Q ss_pred cccceeecccccCCCCC---chhhcCCCCCCeeec
Q 038615 176 KNLTHLSLITNKRTGAI---PSTLGHLTSLLYLDL 207 (274)
Q Consensus 176 ~~L~~L~l~~n~l~~~~---p~~l~~l~~L~~L~l 207 (274)
.+|..|++.+|..+..- -..+.-+++|++|+-
T Consensus 116 ~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 116 ENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred cchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 66777777777655411 123444566666654
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.64 E-value=3.2e-05 Score=63.67 Aligned_cols=111 Identities=23% Similarity=0.174 Sum_probs=72.5
Q ss_pred CCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEECCCCCCCCCcCCCchhccCCcccceeecccccCCC-CCchh
Q 038615 117 IPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTG-AIPST 195 (274)
Q Consensus 117 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~-~~p~~ 195 (274)
+......+..|+.|.+.+..++.. ..+..+++|++|.++.|.+.. .+.++.....+|+|+++++++|++.. .--..
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~-~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p 111 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRV-SGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP 111 (260)
T ss_pred cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccc-cccceehhhhCCceeEEeecCCccccccccch
Confidence 444444566777777777776622 345677899999999994421 45555556677999999999998863 11122
Q ss_pred hcCCCCCCeeecccCcCCCCC---chhccCCCCCCEEE
Q 038615 196 LGHLTSLLYLDLSSNQLHSFI---PLEIGNFSALEELD 230 (274)
Q Consensus 196 l~~l~~L~~L~ls~N~l~~~~---p~~l~~l~~L~~L~ 230 (274)
+..+.+|..|++.+|..+... -..|.-+++|++||
T Consensus 112 l~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 112 LKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 456677888888888766532 13455567777664
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.24 E-value=1.1e-05 Score=67.00 Aligned_cols=99 Identities=27% Similarity=0.346 Sum_probs=49.6
Q ss_pred CccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEECCCCCCCCCcCCCchhccCCccccee
Q 038615 102 NLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHL 181 (274)
Q Consensus 102 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~lp~~l~~l~~L~~L 181 (274)
+.+.|++-++.+++. .....++.|++|.|+-|.|+.. ..+..+++|++|+|..|.|..+.. -.-+.++|+|+.|
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldE--L~YLknlpsLr~L 93 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDE--LEYLKNLPSLRTL 93 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHH--HHHHhcCchhhhH
Confidence 344455555554421 1223455555555555555522 224455556666666665543221 1234566666666
Q ss_pred ecccccCCCCCch-----hhcCCCCCCeee
Q 038615 182 SLITNKRTGAIPS-----TLGHLTSLLYLD 206 (274)
Q Consensus 182 ~l~~n~l~~~~p~-----~l~~l~~L~~L~ 206 (274)
+|..|...|.-+. .+.-+|+|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 6666666554433 234456666654
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.21 E-value=0.0013 Score=48.91 Aligned_cols=122 Identities=20% Similarity=0.255 Sum_probs=45.9
Q ss_pred ccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEECCCCCCCCCcCCCchhccCC
Q 038615 96 NFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNL 175 (274)
Q Consensus 96 ~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~lp~~l~~l 175 (274)
.|.+.++|+.+.+.. .+.......|..+++|+.+.+..+ +...-...+..+++++.+.+.. .+..+. ...+..+
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~---~~~F~~~ 80 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIG---DNAFSNC 80 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE----TTTTTT-
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccc---ccccccc
Confidence 556666666666653 343333344556666666666654 4423333455555666666654 221111 1234455
Q ss_pred cccceeecccccCCCCCchhhcCCCCCCeeecccCcCCCCCchhccCCCCC
Q 038615 176 KNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSAL 226 (274)
Q Consensus 176 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L 226 (274)
++|+.+.+..+ +...-...+.+. +++.+.+.. .++......|.++++|
T Consensus 81 ~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 81 TNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 66666666543 322222334443 566665544 2222233444444444
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.00 E-value=5e-05 Score=63.26 Aligned_cols=100 Identities=26% Similarity=0.169 Sum_probs=75.8
Q ss_pred CCCCCeeeccCCcCCCccchhccCCCCCcEEECCCCCCCCCcCCCchhccCCcccceeecccccCCCCC-chhhcCCCCC
Q 038615 124 LSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAI-PSTLGHLTSL 202 (274)
Q Consensus 124 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~-p~~l~~l~~L 202 (274)
+.+.+.|+.-++.+++. ....+++.|+.|.|+-|.|+.+ ..+..+++|++|+|..|.+...- -..+.++++|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL-----~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsL 90 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL-----APLQRCTRLKELYLRKNCIESLDELEYLKNLPSL 90 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc-----hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchh
Confidence 45677888888888743 3346789999999999999633 34888999999999999886421 1346789999
Q ss_pred CeeecccCcCCCCCc-----hhccCCCCCCEEE
Q 038615 203 LYLDLSSNQLHSFIP-----LEIGNFSALEELD 230 (274)
Q Consensus 203 ~~L~ls~N~l~~~~p-----~~l~~l~~L~~L~ 230 (274)
+.|.|..|.-.|.-+ ..+.-+|+|+.||
T Consensus 91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 999999998766544 3455677777775
No 67
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.38 E-value=0.017 Score=42.75 Aligned_cols=117 Identities=21% Similarity=0.291 Sum_probs=61.2
Q ss_pred CEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEEC
Q 038615 77 SITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYL 156 (274)
Q Consensus 77 ~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 156 (274)
+++.+.+.. .+. .+....|..+++|+.+.+.++ +.......|..+++++.+.+.. .+.......+..+++|+.+++
T Consensus 13 ~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~ 88 (129)
T PF13306_consen 13 NLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDI 88 (129)
T ss_dssp T--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEE
T ss_pred CCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccccc
Confidence 678888874 455 566658899999999999885 6544445677887899999976 444233455777899999999
Q ss_pred CCCCCCCCcCCCchhccCCcccceeecccccCCCCCchhhcCCCCCC
Q 038615 157 PSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLL 203 (274)
Q Consensus 157 ~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~ 203 (274)
..+ +..+. ...+.+. +|+.+.+.. .+.......|.++++|+
T Consensus 89 ~~~-~~~i~---~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 89 PSN-ITEIG---SSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp TTT--BEEH---TTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred Ccc-ccEEc---hhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 765 43222 2336666 888888875 34434445666666553
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.77 E-value=0.0044 Score=30.96 Aligned_cols=18 Identities=56% Similarity=0.905 Sum_probs=9.0
Q ss_pred CCeeeccCCcCCCccchhc
Q 038615 127 LKYLNLRWNNLTGTIPTEI 145 (274)
Q Consensus 127 L~~L~L~~n~l~~~~p~~~ 145 (274)
|++|++++|+++ .+|+.+
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 455555555555 444443
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.65 E-value=0.0039 Score=31.17 Aligned_cols=12 Identities=67% Similarity=0.902 Sum_probs=5.4
Q ss_pred CCeeecccCcCC
Q 038615 202 LLYLDLSSNQLH 213 (274)
Q Consensus 202 L~~L~ls~N~l~ 213 (274)
|++|++++|+++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
No 70
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.65 E-value=0.024 Score=26.29 Aligned_cols=15 Identities=47% Similarity=0.784 Sum_probs=7.2
Q ss_pred CCCEEEccCCccCcc
Q 038615 225 ALEELDLSDNKIRAL 239 (274)
Q Consensus 225 ~L~~L~l~~N~l~~~ 239 (274)
+|+.|++++|+|+.+
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 566666666666543
No 71
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.20 E-value=0.0011 Score=54.01 Aligned_cols=84 Identities=18% Similarity=0.162 Sum_probs=67.8
Q ss_pred CCCEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEE
Q 038615 75 KGSITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEEL 154 (274)
Q Consensus 75 ~~~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 154 (274)
..+++.||++.+.+. .+.. .|..++.+..|+++.|.+. ..|..+.+...++.+++..|..+ ..|.+++..+.++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~-n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGK-NFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN 116 (326)
T ss_pred cceeeeehhhhhHHH-hhcc-chHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence 357888999888876 4444 5677788888999988887 67888888888888888888887 788888888899888
Q ss_pred ECCCCCCC
Q 038615 155 YLPSNKLN 162 (274)
Q Consensus 155 ~L~~n~l~ 162 (274)
++-+|.+.
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 88888763
No 72
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.43 E-value=0.00064 Score=62.17 Aligned_cols=83 Identities=25% Similarity=0.279 Sum_probs=42.1
Q ss_pred EEEEEecCCCcccc----cCccccCCCCCccEEEccCCCCCCCC----CccCCCC-CCCCeeeccCCcCCCc----cchh
Q 038615 78 ITHIELVECSIKGE----LGSLNFSCFPNLQYLNLWNNNLSGSI----PPQIGSL-SNLKYLNLRWNNLTGT----IPTE 144 (274)
Q Consensus 78 l~~L~l~~~~l~~~----l~~~~l~~l~~L~~L~l~~n~l~~~~----p~~l~~l-~~L~~L~L~~n~l~~~----~p~~ 144 (274)
+..+.+.+|.+... +.. .+...+.|+.|++++|.+.+.- -..+... +.+++|++..|.+++. +.+.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~-~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQ-ALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred HHHhhhhhCccccchHHHHHH-HhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 45566666666522 222 3455666777777777665221 1112222 3455566665555532 2333
Q ss_pred ccCCCCCcEEECCCCCC
Q 038615 145 IGIFRNLEELYLPSNKL 161 (274)
Q Consensus 145 ~~~l~~L~~L~L~~n~l 161 (274)
+.....++.++++.|.+
T Consensus 168 L~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNGL 184 (478)
T ss_pred HhcccchhHHHHHhccc
Confidence 44455666666666655
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.40 E-value=0.00074 Score=61.77 Aligned_cols=163 Identities=23% Similarity=0.258 Sum_probs=102.3
Q ss_pred CCEEEEEecCCCcccc----cCccccCCC-CCccEEEccCCCCCCC----CCccCCCCCCCCeeeccCCcCCC----ccc
Q 038615 76 GSITHIELVECSIKGE----LGSLNFSCF-PNLQYLNLWNNNLSGS----IPPQIGSLSNLKYLNLRWNNLTG----TIP 142 (274)
Q Consensus 76 ~~l~~L~l~~~~l~~~----l~~~~l~~l-~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~----~~p 142 (274)
..+..|++++|.+.+. +-. .+... ..+++|++..|.+++. +.+.+.....++.++++.|.+.. .++
T Consensus 115 ~~L~~L~l~~n~l~~~g~~~l~~-~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~ 193 (478)
T KOG4308|consen 115 PTLGQLDLSGNNLGDEGARLLCE-GLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLS 193 (478)
T ss_pred ccHhHhhcccCCCccHhHHHHHh-hcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHh
Confidence 3677788888888632 111 12222 4567788888877643 44455667788888888888741 122
Q ss_pred hhcc----CCCCCcEEECCCCCCCCCcC-CCchhccCCcc-cceeecccccCCCC----CchhhcCC-CCCCeeecccCc
Q 038615 143 TEIG----IFRNLEELYLPSNKLNGFNG-TIPREIGNLKN-LTHLSLITNKRTGA----IPSTLGHL-TSLLYLDLSSNQ 211 (274)
Q Consensus 143 ~~~~----~l~~L~~L~L~~n~l~~~~~-~lp~~l~~l~~-L~~L~l~~n~l~~~----~p~~l~~l-~~L~~L~ls~N~ 211 (274)
..+. ...++++|.++++.++...- .+-..+...+. +..+++..|.+.+. ..+.+..+ ..++.++++.|.
T Consensus 194 ~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~ns 273 (478)
T KOG4308|consen 194 QALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNS 273 (478)
T ss_pred hhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCC
Confidence 2233 46688888888888752111 11122344445 66688888887643 22334444 577889999998
Q ss_pred CCCCC----chhccCCCCCCEEEccCCccCcc
Q 038615 212 LHSFI----PLEIGNFSALEELDLSDNKIRAL 239 (274)
Q Consensus 212 l~~~~----p~~l~~l~~L~~L~l~~N~l~~~ 239 (274)
+++.- ...+..++.++++.+++|.+...
T Consensus 274 i~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~ 305 (478)
T KOG4308|consen 274 ITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY 305 (478)
T ss_pred ccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence 87653 34455667888899999988765
No 74
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=92.08 E-value=0.074 Score=48.51 Aligned_cols=111 Identities=25% Similarity=0.143 Sum_probs=51.9
Q ss_pred CCCccEEEccCCCCCCC--CCccCCCCCCCCeeeccCC-cCCCccc----hhccCCCCCcEEECCCCC-CCCCcCCCchh
Q 038615 100 FPNLQYLNLWNNNLSGS--IPPQIGSLSNLKYLNLRWN-NLTGTIP----TEIGIFRNLEELYLPSNK-LNGFNGTIPRE 171 (274)
Q Consensus 100 l~~L~~L~l~~n~l~~~--~p~~l~~l~~L~~L~L~~n-~l~~~~p----~~~~~l~~L~~L~L~~n~-l~~~~~~lp~~ 171 (274)
.++|+.|.+.++.-... .-......+.|+.|+++++ ......+ .....+.+|+.++++++. ++. -.+...
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd--~~l~~l 264 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTD--IGLSAL 264 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCc--hhHHHH
Confidence 56666666665532211 1223345566677776652 1111111 122344666666666665 321 111111
Q ss_pred ccCCcccceeeccccc-CCCCC-chhhcCCCCCCeeecccCcC
Q 038615 172 IGNLKNLTHLSLITNK-RTGAI-PSTLGHLTSLLYLDLSSNQL 212 (274)
Q Consensus 172 l~~l~~L~~L~l~~n~-l~~~~-p~~l~~l~~L~~L~ls~N~l 212 (274)
...+++|+.|.+.++. ++..- -.....+++|++|+++++..
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 2235666666655555 33221 11223456677777766653
No 75
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.96 E-value=0.0044 Score=50.66 Aligned_cols=93 Identities=16% Similarity=0.169 Sum_probs=71.8
Q ss_pred ccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEECCCCCCCCCcCCCch
Q 038615 91 ELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPR 170 (274)
Q Consensus 91 ~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~lp~ 170 (274)
++|-..+..+...+.||++.|++. .....|+-++.|..|+++.|.+. .+|+.++....++.+++..|..+ ..|.
T Consensus 32 ~~~v~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~----~~p~ 105 (326)
T KOG0473|consen 32 EIPVREIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS----QQPK 105 (326)
T ss_pred ccchhhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh----hCCc
Confidence 344336777788888999988876 34556677778888899988887 77888888888888888888763 5677
Q ss_pred hccCCcccceeecccccCC
Q 038615 171 EIGNLKNLTHLSLITNKRT 189 (274)
Q Consensus 171 ~l~~l~~L~~L~l~~n~l~ 189 (274)
.++..++++.+++.+|.+.
T Consensus 106 s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 106 SQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred cccccCCcchhhhccCcch
Confidence 8888888888888888764
No 76
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=90.92 E-value=0.044 Score=50.00 Aligned_cols=114 Identities=25% Similarity=0.082 Sum_probs=56.9
Q ss_pred CCCCCeeeccCCcCCCc--cchhccCCCCCcEEECCCC-CCCCCcC-CCchhccCCcccceeeccccc-CCCCCchhhc-
Q 038615 124 LSNLKYLNLRWNNLTGT--IPTEIGIFRNLEELYLPSN-KLNGFNG-TIPREIGNLKNLTHLSLITNK-RTGAIPSTLG- 197 (274)
Q Consensus 124 l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~L~~n-~l~~~~~-~lp~~l~~l~~L~~L~l~~n~-l~~~~p~~l~- 197 (274)
.+.|+.|.+..+.-... +-.....++.|+.|+++++ ......+ ........+++|+.|+++.+. ++...-..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 56666666665532212 2233445667777777652 1100011 011223445667777777666 4433223332
Q ss_pred CCCCCCeeecccCc-CCCCC-chhccCCCCCCEEEccCCccC
Q 038615 198 HLTSLLYLDLSSNQ-LHSFI-PLEIGNFSALEELDLSDNKIR 237 (274)
Q Consensus 198 ~l~~L~~L~ls~N~-l~~~~-p~~l~~l~~L~~L~l~~N~l~ 237 (274)
.+++|+.|.+.++. +++.. -.....+++|++|+++++...
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 25667777766655 44332 223345566777777766543
No 77
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.40 E-value=0.25 Score=25.43 Aligned_cols=19 Identities=42% Similarity=0.656 Sum_probs=14.1
Q ss_pred CCCCCEEEccCCccCcccc
Q 038615 223 FSALEELDLSDNKIRALQI 241 (274)
Q Consensus 223 l~~L~~L~l~~N~l~~~~~ 241 (274)
+++|+.|++++|+|+.++.
T Consensus 1 L~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCCEEECCCCcCCcCCH
Confidence 3577888888888877654
No 78
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.40 E-value=0.25 Score=25.43 Aligned_cols=19 Identities=42% Similarity=0.656 Sum_probs=14.1
Q ss_pred CCCCCEEEccCCccCcccc
Q 038615 223 FSALEELDLSDNKIRALQI 241 (274)
Q Consensus 223 l~~L~~L~l~~N~l~~~~~ 241 (274)
+++|+.|++++|+|+.++.
T Consensus 1 L~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCCEEECCCCcCCcCCH
Confidence 3577888888888877654
No 79
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.56 E-value=0.34 Score=24.86 Aligned_cols=16 Identities=56% Similarity=0.634 Sum_probs=11.4
Q ss_pred CCCCeeecccCcCCCC
Q 038615 200 TSLLYLDLSSNQLHSF 215 (274)
Q Consensus 200 ~~L~~L~ls~N~l~~~ 215 (274)
++|++|++++|+++..
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00369 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 5677777777777764
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.56 E-value=0.34 Score=24.86 Aligned_cols=16 Identities=56% Similarity=0.634 Sum_probs=11.4
Q ss_pred CCCCeeecccCcCCCC
Q 038615 200 TSLLYLDLSSNQLHSF 215 (274)
Q Consensus 200 ~~L~~L~ls~N~l~~~ 215 (274)
++|++|++++|+++..
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00370 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 5677777777777764
No 81
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=87.92 E-value=0.21 Score=44.43 Aligned_cols=136 Identities=22% Similarity=0.104 Sum_probs=80.6
Q ss_pred CCCCccEEEccCCCCCCC--CCccCCCCCCCCeeeccCCc-CCCccchhc-cCCCCCcEEECCCCCCCCCcCCCchhccC
Q 038615 99 CFPNLQYLNLWNNNLSGS--IPPQIGSLSNLKYLNLRWNN-LTGTIPTEI-GIFRNLEELYLPSNKLNGFNGTIPREIGN 174 (274)
Q Consensus 99 ~l~~L~~L~l~~n~l~~~--~p~~l~~l~~L~~L~L~~n~-l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~~~lp~~l~~ 174 (274)
....|+.|+.+++...+. +..-..+.++|++|.++.++ |+..--..+ .+.+.|+.+++....... .+.+-..-.+
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~-d~tL~sls~~ 370 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLIT-DGTLASLSRN 370 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceeh-hhhHhhhccC
Confidence 355677777776654221 11112355778888887765 332211222 345678888887765431 3344444567
Q ss_pred CcccceeecccccCCCCC-----chhhcCCCCCCeeecccCcC-CCCCchhccCCCCCCEEEccCCc
Q 038615 175 LKNLTHLSLITNKRTGAI-----PSTLGHLTSLLYLDLSSNQL-HSFIPLEIGNFSALEELDLSDNK 235 (274)
Q Consensus 175 l~~L~~L~l~~n~l~~~~-----p~~l~~l~~L~~L~ls~N~l-~~~~p~~l~~l~~L~~L~l~~N~ 235 (274)
++.|+.+.++.+...... ...-.....|+.+.+++++. ++..-+.+..+++|+.+++.+++
T Consensus 371 C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 371 CPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred CchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 888899888877653211 11112445688888888874 34444566777888888888775
No 82
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=87.81 E-value=0.25 Score=24.89 Aligned_cols=17 Identities=47% Similarity=0.542 Sum_probs=10.7
Q ss_pred CCCCCEEEccCCccCcc
Q 038615 223 FSALEELDLSDNKIRAL 239 (274)
Q Consensus 223 l~~L~~L~l~~N~l~~~ 239 (274)
+++|++|++++|+|++.
T Consensus 1 ~~~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDE 17 (24)
T ss_dssp -TT-SEEE-TSSBEHHH
T ss_pred CCCCCEEEccCCcCCHH
Confidence 36788888888887654
No 83
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=86.80 E-value=0.63 Score=24.19 Aligned_cols=17 Identities=59% Similarity=0.901 Sum_probs=11.3
Q ss_pred CCCCEEEccCCccCccc
Q 038615 224 SALEELDLSDNKIRALQ 240 (274)
Q Consensus 224 ~~L~~L~l~~N~l~~~~ 240 (274)
++|+.|++++|+|+.+.
T Consensus 2 ~~L~~L~L~~NkI~~IE 18 (26)
T smart00365 2 TNLEELDLSQNKIKKIE 18 (26)
T ss_pred CccCEEECCCCccceec
Confidence 46777777777776553
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.61 E-value=0.17 Score=40.55 Aligned_cols=83 Identities=17% Similarity=0.098 Sum_probs=43.7
Q ss_pred CCCCeeeccCCcCCCccchhccCCCCCcEEECCCCCCCCCcCCCchhc-cCCcccceeeccccc-CCCCCchhhcCCCCC
Q 038615 125 SNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREI-GNLKNLTHLSLITNK-RTGAIPSTLGHLTSL 202 (274)
Q Consensus 125 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~lp~~l-~~l~~L~~L~l~~n~-l~~~~p~~l~~l~~L 202 (274)
..++.+|-++..+...--+.+..++.++.|.+.++.-- ...--..+ +-.++|+.|++++|. ++..-...+..+++|
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~--dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknL 178 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYF--DDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNL 178 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccch--hhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhh
Confidence 34677777777776554455666677777766665421 10000111 123566666666553 333333445555666
Q ss_pred Ceeeccc
Q 038615 203 LYLDLSS 209 (274)
Q Consensus 203 ~~L~ls~ 209 (274)
+.|.+.+
T Consensus 179 r~L~l~~ 185 (221)
T KOG3864|consen 179 RRLHLYD 185 (221)
T ss_pred HHHHhcC
Confidence 6665544
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.33 E-value=0.22 Score=40.01 Aligned_cols=82 Identities=18% Similarity=0.219 Sum_probs=43.6
Q ss_pred CccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCc-cchhcc-CCCCCcEEECCCCC-CCCCcCCCchhccCCccc
Q 038615 102 NLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGT-IPTEIG-IFRNLEELYLPSNK-LNGFNGTIPREIGNLKNL 178 (274)
Q Consensus 102 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~~~-~l~~L~~L~L~~n~-l~~~~~~lp~~l~~l~~L 178 (274)
.++.++-++..|..+--+.+..++.++.|.+.++.--+. --+.++ ..++|+.|++++|. |+ ++. ...+..+++|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT--~~G-L~~L~~lknL 178 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT--DGG-LACLLKLKNL 178 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec--hhH-HHHHHHhhhh
Confidence 366677777666544334455666666666665532111 001122 34677778887664 43 111 2445666677
Q ss_pred ceeecccc
Q 038615 179 THLSLITN 186 (274)
Q Consensus 179 ~~L~l~~n 186 (274)
+.|.+.+-
T Consensus 179 r~L~l~~l 186 (221)
T KOG3864|consen 179 RRLHLYDL 186 (221)
T ss_pred HHHHhcCc
Confidence 77666543
No 86
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=79.52 E-value=1.5 Score=23.01 Aligned_cols=15 Identities=53% Similarity=0.780 Sum_probs=11.9
Q ss_pred CCCCEEEccCCccCc
Q 038615 224 SALEELDLSDNKIRA 238 (274)
Q Consensus 224 ~~L~~L~l~~N~l~~ 238 (274)
++|++|||++|.|+.
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 568888888888864
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=78.35 E-value=1.4 Score=22.83 Aligned_cols=18 Identities=33% Similarity=0.608 Sum_probs=13.0
Q ss_pred CCCCEEEccCCccCcccc
Q 038615 224 SALEELDLSDNKIRALQI 241 (274)
Q Consensus 224 ~~L~~L~l~~N~l~~~~~ 241 (274)
++|+.|++++|+++..+.
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 357778888888877654
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=77.44 E-value=1.1 Score=41.31 Aligned_cols=67 Identities=25% Similarity=0.243 Sum_probs=30.5
Q ss_pred CCCCCcEEECCCCCCCCCcCCCchhccCCcccceeecccccCCCCCchhhcCC--CCCCeeecccCcCCC
Q 038615 147 IFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHL--TSLLYLDLSSNQLHS 214 (274)
Q Consensus 147 ~l~~L~~L~L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l--~~L~~L~ls~N~l~~ 214 (274)
+.+.+..+.|++|++..+++ +-......|+|+.|+|++|...-....++.++ ..|++|-+.+|++..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~-~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDA-LSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhh-hhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 34555666666666543331 11122344566666666662111111122221 235666666666543
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=69.27 E-value=2 Score=39.67 Aligned_cols=37 Identities=32% Similarity=0.369 Sum_probs=16.8
Q ss_pred CCCCccEEEccCCCCCCC--CCccCCCCCCCCeeeccCC
Q 038615 99 CFPNLQYLNLWNNNLSGS--IPPQIGSLSNLKYLNLRWN 135 (274)
Q Consensus 99 ~l~~L~~L~l~~n~l~~~--~p~~l~~l~~L~~L~L~~n 135 (274)
+.+.+..++|++|++... +..--...++|++|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 345555555555554311 1111123345555555555
No 90
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=50.46 E-value=10 Score=34.19 Aligned_cols=154 Identities=17% Similarity=0.060 Sum_probs=86.3
Q ss_pred CEEEEEecCCCcccccCcc-ccCCCCCccEEEccCCC-CCCCCCccC-CCCCCCCeeeccCCcCCCc--cchhccCCCCC
Q 038615 77 SITHIELVECSIKGELGSL-NFSCFPNLQYLNLWNNN-LSGSIPPQI-GSLSNLKYLNLRWNNLTGT--IPTEIGIFRNL 151 (274)
Q Consensus 77 ~l~~L~l~~~~l~~~l~~~-~l~~l~~L~~L~l~~n~-l~~~~p~~l-~~l~~L~~L~L~~n~l~~~--~p~~~~~l~~L 151 (274)
.++.+..+++.-.+..+-. --.+..+|++|.+..++ |+..--..+ .+.+.|+.+++..+..... +-..-.+++.|
T Consensus 295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~l 374 (483)
T KOG4341|consen 295 ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRL 374 (483)
T ss_pred HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchh
Confidence 4566666665543221110 12345788888888876 332211112 3567788888887755311 22222467888
Q ss_pred cEEECCCCCCCCCcCC--CchhccCCcccceeecccccCCC-CCchhhcCCCCCCeeecccCcC-C-CCCchhccCCCCC
Q 038615 152 EELYLPSNKLNGFNGT--IPREIGNLKNLTHLSLITNKRTG-AIPSTLGHLTSLLYLDLSSNQL-H-SFIPLEIGNFSAL 226 (274)
Q Consensus 152 ~~L~L~~n~l~~~~~~--lp~~l~~l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~L~ls~N~l-~-~~~p~~l~~l~~L 226 (274)
+.+.++.+....-.|. +-..-..+..|+.+.++++.... ...+.+..+++|+.+++-+++- + ..+...-.+++++
T Consensus 375 r~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i 454 (483)
T KOG4341|consen 375 RVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNI 454 (483)
T ss_pred ccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccc
Confidence 8888887654211111 11112345678888888887542 3334566778899998888762 2 2233444567776
Q ss_pred CEEE
Q 038615 227 EELD 230 (274)
Q Consensus 227 ~~L~ 230 (274)
++..
T Consensus 455 ~v~a 458 (483)
T KOG4341|consen 455 KVHA 458 (483)
T ss_pred eehh
Confidence 6554
No 91
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=44.75 E-value=16 Score=40.58 Aligned_cols=33 Identities=24% Similarity=0.272 Sum_probs=26.7
Q ss_pred ecccccCCCCCchhhcCCCCCCeeecccCcCCC
Q 038615 182 SLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHS 214 (274)
Q Consensus 182 ~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 214 (274)
||++|+++...+..|..+++|+.|+|++|.+.-
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 578888887777778888889999999988753
No 92
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=42.68 E-value=19 Score=25.24 Aligned_cols=6 Identities=17% Similarity=0.656 Sum_probs=2.4
Q ss_pred HHHHHH
Q 038615 10 RAVIVF 15 (274)
Q Consensus 10 ~~~~~~ 15 (274)
+.++++
T Consensus 4 K~~llL 9 (95)
T PF07172_consen 4 KAFLLL 9 (95)
T ss_pred hHHHHH
Confidence 343333
No 93
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=39.82 E-value=20 Score=18.11 Aligned_cols=16 Identities=44% Similarity=0.503 Sum_probs=11.7
Q ss_pred CCCCCEEEccCCc-cCc
Q 038615 223 FSALEELDLSDNK-IRA 238 (274)
Q Consensus 223 l~~L~~L~l~~N~-l~~ 238 (274)
+++|++|++++|. ++.
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 3678888888885 554
No 94
>PTZ00459 mucin-associated surface protein (MASP); Provisional
Probab=34.93 E-value=26 Score=30.11 Aligned_cols=21 Identities=24% Similarity=0.067 Sum_probs=16.8
Q ss_pred ccccchhHHHHHHHHHHHHHH
Q 038615 3 CAFSNTCRAVIVFIWAALTPL 23 (274)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~ 23 (274)
|+++|+.||++|=.++.+|+.
T Consensus 1 MaMmMTGRVLLVCALCVLWCg 21 (291)
T PTZ00459 1 MAMMMTGRVLLVCALCVLWCG 21 (291)
T ss_pred CccchhchHHHHHHHHHHhcC
Confidence 445678999998888888876
No 95
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=26.16 E-value=48 Score=37.21 Aligned_cols=32 Identities=25% Similarity=0.283 Sum_probs=25.5
Q ss_pred ECCCCCCCCCcCCCchhccCCcccceeecccccCC
Q 038615 155 YLPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRT 189 (274)
Q Consensus 155 ~L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~ 189 (274)
||++|+|+.+. +..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp---~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIE---EGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccC---hHHhccCCCceEEEeeCCccc
Confidence 68899997444 245778999999999999875
No 96
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=21.56 E-value=1.1e+02 Score=25.17 Aligned_cols=11 Identities=18% Similarity=0.329 Sum_probs=4.9
Q ss_pred EEccCCccCcc
Q 038615 229 LDLSDNKIRAL 239 (274)
Q Consensus 229 L~l~~N~l~~~ 239 (274)
-||++++++|-
T Consensus 261 adLencnlsG~ 271 (302)
T KOG1665|consen 261 ADLENCNLSGA 271 (302)
T ss_pred CccccCCCCCc
Confidence 34444444443
Done!