Query 038615
Match_columns 274
No_of_seqs 352 out of 2755
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 22:25:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038615.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038615hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ogq_A PGIP-2, polygalacturona 100.0 1.3E-34 4.3E-39 249.9 14.6 223 31-260 2-233 (313)
2 4eco_A Uncharacterized protein 100.0 1E-32 3.5E-37 259.3 11.9 227 31-264 26-369 (636)
3 3rgz_A Protein brassinosteroid 100.0 6.8E-31 2.3E-35 251.8 13.9 222 31-261 8-282 (768)
4 4ecn_A Leucine-rich repeat pro 100.0 6.9E-31 2.4E-35 252.9 12.2 228 29-264 263-611 (876)
5 4fcg_A Uncharacterized protein 100.0 9.1E-29 3.1E-33 214.6 11.7 200 31-240 23-245 (328)
6 2o6q_A Variable lymphocyte rec 99.9 2E-25 6.8E-30 188.3 17.6 180 77-260 38-217 (270)
7 3m19_A Variable lymphocyte rec 99.9 1.4E-24 4.8E-29 181.2 16.6 191 77-271 36-231 (251)
8 1ogq_A PGIP-2, polygalacturona 99.9 3.7E-25 1.3E-29 190.6 11.1 190 76-269 101-312 (313)
9 3rgz_A Protein brassinosteroid 99.9 7.2E-25 2.5E-29 210.0 14.0 119 149-272 632-751 (768)
10 2o6q_A Variable lymphocyte rec 99.9 3.2E-23 1.1E-27 174.7 18.7 197 62-265 2-198 (270)
11 3m19_A Variable lymphocyte rec 99.9 3.5E-23 1.2E-27 172.7 18.6 191 63-262 3-193 (251)
12 1ozn_A Reticulon 4 receptor; N 99.9 2E-23 7E-28 177.1 16.9 182 77-262 33-215 (285)
13 2z66_A Variable lymphocyte rec 99.9 1.1E-23 3.7E-28 180.5 12.7 195 64-262 6-237 (306)
14 2z80_A TOLL-like receptor 2, v 99.9 4.1E-24 1.4E-28 186.9 9.7 198 61-264 26-238 (353)
15 1ozn_A Reticulon 4 receptor; N 99.9 4.2E-23 1.4E-27 175.1 15.4 183 75-261 55-238 (285)
16 3zyi_A Leucine-rich repeat-con 99.9 7.2E-23 2.5E-27 184.8 16.9 186 76-264 75-282 (452)
17 4fcg_A Uncharacterized protein 99.9 2.4E-23 8.3E-28 180.4 13.1 176 76-259 104-288 (328)
18 2z62_A TOLL-like receptor 4, v 99.9 7.9E-23 2.7E-27 172.7 15.2 183 77-264 29-216 (276)
19 2z81_A CD282 antigen, TOLL-lik 99.9 2.6E-23 9E-28 191.6 10.3 196 64-263 3-211 (549)
20 3e6j_A Variable lymphocyte rec 99.9 7.8E-22 2.7E-26 162.4 17.9 167 55-240 9-175 (229)
21 3rfs_A Internalin B, repeat mo 99.9 6.4E-22 2.2E-26 166.9 17.4 161 75-241 62-222 (272)
22 1p9a_G Platelet glycoprotein I 99.9 6.1E-22 2.1E-26 168.7 16.0 178 76-261 31-208 (290)
23 1wwl_A Monocyte differentiatio 99.9 8.7E-23 3E-27 175.6 10.8 186 75-268 94-294 (312)
24 3zyj_A Leucine-rich repeat-con 99.9 5.4E-22 1.8E-26 178.5 16.4 186 77-265 65-272 (440)
25 2z66_A Variable lymphocyte rec 99.9 2.1E-22 7.3E-27 172.4 12.0 184 75-262 77-262 (306)
26 1p9a_G Platelet glycoprotein I 99.9 1.4E-21 4.8E-26 166.5 16.8 154 76-237 55-208 (290)
27 3oja_B Anopheles plasmodium-re 99.9 3.6E-22 1.2E-26 186.2 14.0 109 78-190 77-185 (597)
28 3v47_A TOLL-like receptor 5B a 99.9 5.1E-22 1.7E-26 178.9 14.4 154 63-220 6-174 (455)
29 2o6s_A Variable lymphocyte rec 99.9 5.4E-22 1.8E-26 160.7 12.8 168 63-241 5-182 (208)
30 2ft3_A Biglycan; proteoglycan, 99.9 1.7E-21 6E-26 168.7 16.1 198 64-265 32-281 (332)
31 2id5_A Lingo-1, leucine rich r 99.9 1.1E-21 3.7E-26 178.0 15.0 162 76-241 32-193 (477)
32 1xku_A Decorin; proteoglycan, 99.9 3.4E-21 1.2E-25 166.7 17.5 200 63-266 29-281 (330)
33 2xwt_C Thyrotropin receptor; s 99.9 7.9E-22 2.7E-26 163.1 12.7 184 76-266 31-223 (239)
34 3o6n_A APL1; leucine-rich repe 99.9 1.1E-21 3.8E-26 173.6 13.9 108 78-189 71-178 (390)
35 2z62_A TOLL-like receptor 4, v 99.9 1.1E-21 3.8E-26 165.6 13.2 183 75-261 51-237 (276)
36 3rfs_A Internalin B, repeat mo 99.9 6E-21 2E-25 161.0 17.3 179 75-261 40-218 (272)
37 3vq2_A TLR4, TOLL-like recepto 99.9 9.8E-22 3.3E-26 183.2 13.4 181 76-261 32-217 (606)
38 4eco_A Uncharacterized protein 99.9 1.3E-22 4.3E-27 190.6 7.4 168 92-265 198-394 (636)
39 3v47_A TOLL-like receptor 5B a 99.9 2.2E-21 7.5E-26 174.8 14.7 116 143-261 293-408 (455)
40 3zyi_A Leucine-rich repeat-con 99.9 3.8E-21 1.3E-25 173.5 16.3 180 76-261 99-303 (452)
41 4glp_A Monocyte differentiatio 99.9 9.8E-22 3.3E-26 168.8 11.7 187 77-269 92-293 (310)
42 3vq2_A TLR4, TOLL-like recepto 99.9 1.2E-21 4.2E-26 182.6 12.7 182 76-262 376-559 (606)
43 1wwl_A Monocyte differentiatio 99.9 5.1E-22 1.7E-26 170.8 8.3 180 75-262 120-310 (312)
44 3zyj_A Leucine-rich repeat-con 99.9 6.2E-21 2.1E-25 171.5 15.2 179 76-260 88-291 (440)
45 2v9t_B SLIT homolog 2 protein 99.9 1.6E-20 5.6E-25 153.5 15.6 150 81-238 16-166 (220)
46 2v70_A SLIT-2, SLIT homolog 2 99.9 9E-21 3.1E-25 155.1 14.0 155 80-241 15-170 (220)
47 3t6q_A CD180 antigen; protein- 99.8 5.3E-21 1.8E-25 178.3 13.7 183 77-261 377-560 (606)
48 3oja_B Anopheles plasmodium-re 99.8 1.7E-20 5.7E-25 175.0 17.0 133 77-214 52-185 (597)
49 3j0a_A TOLL-like receptor 5; m 99.8 7.2E-21 2.5E-25 184.1 15.0 193 64-261 13-217 (844)
50 3o6n_A APL1; leucine-rich repe 99.8 2.5E-20 8.5E-25 164.9 17.0 85 77-162 94-178 (390)
51 2id5_A Lingo-1, leucine rich r 99.8 1.3E-20 4.4E-25 170.9 14.7 158 75-236 55-212 (477)
52 3t6q_A CD180 antigen; protein- 99.8 1.2E-20 4E-25 176.0 14.6 185 77-265 326-540 (606)
53 4ecn_A Leucine-rich repeat pro 99.8 5.2E-21 1.8E-25 184.3 11.8 191 65-263 435-659 (876)
54 1h6u_A Internalin H; cell adhe 99.8 6E-20 2E-24 157.7 16.9 171 76-264 63-233 (308)
55 2ft3_A Biglycan; proteoglycan, 99.8 6.1E-20 2.1E-24 159.0 17.0 181 76-261 78-307 (332)
56 4glp_A Monocyte differentiatio 99.8 2.2E-21 7.4E-26 166.7 7.7 182 75-262 116-308 (310)
57 2z7x_B TOLL-like receptor 1, v 99.8 2.7E-20 9.2E-25 170.5 14.5 159 98-262 321-482 (520)
58 1xku_A Decorin; proteoglycan, 99.8 6.2E-20 2.1E-24 158.7 14.9 160 97-263 141-308 (330)
59 1ziw_A TOLL-like receptor 3; i 99.8 3E-20 1E-24 175.5 14.0 163 76-242 25-189 (680)
60 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 7.8E-20 2.7E-24 169.2 16.1 158 98-261 350-510 (562)
61 1ziw_A TOLL-like receptor 3; i 99.8 8.7E-20 3E-24 172.3 16.3 184 77-260 406-621 (680)
62 4g8a_A TOLL-like receptor 4; l 99.8 5.2E-20 1.8E-24 171.7 14.6 161 77-241 53-218 (635)
63 4ezg_A Putative uncharacterize 99.8 6.7E-20 2.3E-24 147.2 13.3 153 76-239 44-196 (197)
64 2o6s_A Variable lymphocyte rec 99.8 4.2E-19 1.4E-23 143.6 17.6 156 79-241 10-165 (208)
65 1h6t_A Internalin B; cell adhe 99.8 1.3E-19 4.4E-24 154.4 14.6 147 77-239 47-193 (291)
66 2xot_A Amphoterin-induced prot 99.8 5.1E-20 1.7E-24 161.5 12.3 157 77-237 40-202 (361)
67 2xot_A Amphoterin-induced prot 99.8 1E-19 3.6E-24 159.5 14.0 175 80-261 22-202 (361)
68 2v70_A SLIT-2, SLIT homolog 2 99.8 1.1E-19 3.9E-24 148.5 13.1 151 64-217 10-170 (220)
69 3oja_A Leucine-rich immune mol 99.8 1.8E-20 6.2E-25 170.7 9.0 179 77-264 35-230 (487)
70 1h6u_A Internalin H; cell adhe 99.8 2.2E-19 7.4E-24 154.2 15.0 175 77-269 42-216 (308)
71 3cvr_A Invasion plasmid antige 99.8 6.4E-20 2.2E-24 169.4 12.4 176 58-265 36-224 (571)
72 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.2E-19 4.1E-24 167.9 14.3 66 197-262 350-417 (562)
73 2v9t_B SLIT homolog 2 protein 99.8 2.5E-19 8.6E-24 146.5 14.5 152 104-261 14-165 (220)
74 2z63_A TOLL-like receptor 4, v 99.8 2E-20 6.9E-25 172.9 8.7 180 77-261 348-531 (570)
75 2z80_A TOLL-like receptor 2, v 99.8 8.3E-20 2.8E-24 159.5 12.0 186 68-264 26-214 (353)
76 2z63_A TOLL-like receptor 4, v 99.8 9.9E-20 3.4E-24 168.2 12.9 179 75-258 27-210 (570)
77 4g8a_A TOLL-like receptor 4; l 99.8 3.8E-19 1.3E-23 165.9 14.6 172 85-263 40-216 (635)
78 3j0a_A TOLL-like receptor 5; m 99.8 2.6E-19 9E-24 173.2 14.0 86 76-162 73-161 (844)
79 3e6j_A Variable lymphocyte rec 99.8 1.4E-18 4.9E-23 142.8 15.8 152 103-261 21-172 (229)
80 2z81_A CD282 antigen, TOLL-lik 99.8 2.3E-19 7.9E-24 165.2 11.9 181 71-261 3-185 (549)
81 4b8c_D Glucose-repressible alc 99.8 8E-20 2.7E-24 173.8 8.0 198 33-239 130-356 (727)
82 4ezg_A Putative uncharacterize 99.8 3.4E-19 1.2E-23 143.1 10.5 155 97-262 40-195 (197)
83 2z7x_B TOLL-like receptor 1, v 99.8 7.5E-19 2.6E-23 160.9 14.1 160 74-241 322-485 (520)
84 4fmz_A Internalin; leucine ric 99.8 1.4E-18 4.7E-23 151.1 14.8 171 77-261 156-346 (347)
85 2xwt_C Thyrotropin receptor; s 99.8 3E-19 1E-23 147.5 10.0 161 75-242 54-223 (239)
86 3o53_A Protein LRIM1, AGAP0063 99.8 5.8E-20 2E-24 158.3 5.9 173 76-265 58-231 (317)
87 1m9s_A Internalin B; cell inva 99.8 1.1E-18 3.8E-23 162.5 13.6 149 76-240 65-213 (605)
88 3oja_A Leucine-rich immune mol 99.8 3.8E-19 1.3E-23 161.9 8.4 173 76-261 58-250 (487)
89 2ell_A Acidic leucine-rich nuc 99.8 1.6E-18 5.3E-23 135.5 10.7 137 99-240 22-163 (168)
90 1w8a_A SLIT protein; signaling 99.8 3.2E-18 1.1E-22 136.9 12.6 131 80-217 12-143 (192)
91 4fmz_A Internalin; leucine ric 99.8 4.7E-18 1.6E-22 147.7 14.6 184 75-271 131-334 (347)
92 1o6v_A Internalin A; bacterial 99.8 7.4E-18 2.5E-22 152.5 15.4 170 77-264 222-391 (466)
93 1o6v_A Internalin A; bacterial 99.8 9.2E-18 3.1E-22 151.9 15.9 158 98-270 218-375 (466)
94 2ast_B S-phase kinase-associat 99.8 1.4E-19 4.7E-24 156.7 3.8 156 77-235 94-258 (336)
95 1xeu_A Internalin C; cellular 99.8 8.3E-18 2.8E-22 141.1 13.2 149 76-241 41-189 (263)
96 2ast_B S-phase kinase-associat 99.8 1.6E-19 5.4E-24 156.3 2.2 155 77-235 71-233 (336)
97 4ay9_X Follicle-stimulating ho 99.7 4.9E-18 1.7E-22 148.2 11.6 176 65-242 9-220 (350)
98 2je0_A Acidic leucine-rich nuc 99.7 2.7E-18 9.3E-23 131.4 8.6 128 100-232 16-148 (149)
99 3bz5_A Internalin-J, INLJ; leu 99.7 5.4E-17 1.8E-21 146.6 18.3 167 76-263 64-248 (457)
100 3bz5_A Internalin-J, INLJ; leu 99.7 4.6E-17 1.6E-21 147.1 17.7 166 75-264 41-228 (457)
101 3o53_A Protein LRIM1, AGAP0063 99.7 6.3E-19 2.2E-23 151.8 5.2 174 76-265 34-208 (317)
102 1h6t_A Internalin B; cell adhe 99.7 2.2E-17 7.6E-22 140.5 14.5 160 97-271 42-201 (291)
103 1xeu_A Internalin C; cellular 99.7 5.5E-18 1.9E-22 142.2 10.2 168 78-264 21-188 (263)
104 2ell_A Acidic leucine-rich nuc 99.7 1.2E-17 4E-22 130.5 11.0 134 76-214 24-161 (168)
105 1w8a_A SLIT protein; signaling 99.7 1.5E-17 5.2E-22 132.9 11.7 132 104-241 11-143 (192)
106 3cvr_A Invasion plasmid antige 99.7 3.5E-17 1.2E-21 151.2 14.9 114 76-213 80-193 (571)
107 2wfh_A SLIT homolog 2 protein 99.7 5.2E-17 1.8E-21 130.0 13.9 126 80-213 14-139 (193)
108 3g06_A SSPH2 (leucine-rich rep 99.7 8.3E-18 2.8E-22 156.9 9.7 53 77-138 62-114 (622)
109 2o6r_A Variable lymphocyte rec 99.7 1.6E-16 5.5E-21 125.1 14.9 112 101-215 28-139 (177)
110 1m9s_A Internalin B; cell inva 99.7 1.2E-16 4.2E-21 148.8 16.5 172 75-264 42-213 (605)
111 2ca6_A RAN GTPase-activating p 99.7 1.1E-19 3.6E-24 160.7 -3.9 188 76-264 94-319 (386)
112 2o6r_A Variable lymphocyte rec 99.7 1.3E-16 4.4E-21 125.7 14.1 132 104-241 10-141 (177)
113 2je0_A Acidic leucine-rich nuc 99.7 1.8E-17 6.2E-22 126.8 8.3 129 76-209 17-149 (149)
114 1jl5_A Outer protein YOPM; leu 99.7 7.3E-18 2.5E-22 152.2 7.1 171 76-264 11-211 (454)
115 3goz_A Leucine-rich repeat-con 99.7 5.5E-19 1.9E-23 154.9 -0.6 157 78-238 24-210 (362)
116 1jl5_A Outer protein YOPM; leu 99.7 3.3E-16 1.1E-20 141.3 16.4 122 101-239 131-252 (454)
117 2ca6_A RAN GTPase-activating p 99.7 7.8E-19 2.7E-23 155.1 -0.9 186 75-262 59-288 (386)
118 4b8c_D Glucose-repressible alc 99.7 7.1E-18 2.4E-22 160.4 4.0 146 75-234 223-369 (727)
119 3goz_A Leucine-rich repeat-con 99.7 5.3E-18 1.8E-22 148.6 2.3 179 80-262 2-210 (362)
120 2wfh_A SLIT homolog 2 protein 99.7 6.7E-16 2.3E-20 123.5 13.3 129 104-239 13-141 (193)
121 1dce_A Protein (RAB geranylger 99.7 5.2E-19 1.8E-23 163.7 -5.9 107 127-241 443-550 (567)
122 3g06_A SSPH2 (leucine-rich rep 99.7 1.6E-15 5.6E-20 141.5 15.6 167 75-264 80-277 (622)
123 1a9n_A U2A', U2A'; complex (nu 99.6 4.2E-16 1.4E-20 122.7 7.5 134 96-239 14-155 (176)
124 4ay9_X Follicle-stimulating ho 99.6 4.4E-15 1.5E-19 129.5 12.5 159 75-240 53-240 (350)
125 1ds9_A Outer arm dynein; leuci 99.6 1.7E-18 5.9E-23 139.1 -9.7 133 96-238 43-186 (198)
126 1a9n_A U2A', U2A'; complex (nu 99.6 4.1E-15 1.4E-19 116.9 9.1 130 75-214 18-154 (176)
127 1z7x_W Ribonuclease inhibitor; 99.6 3.8E-17 1.3E-21 147.2 -3.8 38 124-161 255-296 (461)
128 1dce_A Protein (RAB geranylger 99.6 7.6E-15 2.6E-19 135.8 11.6 122 102-231 442-567 (567)
129 3g39_A Variable lymphocyte rec 99.6 1.8E-14 6E-19 112.8 11.6 106 103-214 11-116 (170)
130 1ds9_A Outer arm dynein; leuci 99.6 1.3E-17 4.3E-22 133.9 -7.5 136 98-241 15-157 (198)
131 2r9u_A Variable lymphocyte rec 99.6 3.6E-14 1.2E-18 111.5 11.7 104 104-214 15-119 (174)
132 3g39_A Variable lymphocyte rec 99.5 6.1E-14 2.1E-18 109.7 12.4 105 80-191 13-117 (170)
133 1z7x_W Ribonuclease inhibitor; 99.5 3.2E-16 1.1E-20 141.1 -2.6 164 76-239 227-413 (461)
134 2r9u_A Variable lymphocyte rec 99.5 1.8E-13 6E-18 107.5 12.3 104 79-190 15-119 (174)
135 3un9_A NLR family member X1; l 99.4 6.1E-15 2.1E-19 129.6 -3.8 164 76-240 72-255 (372)
136 2ifg_A High affinity nerve gro 99.4 1.8E-12 6.3E-17 112.5 10.7 104 105-214 12-117 (347)
137 2ifg_A High affinity nerve gro 99.3 5.6E-12 1.9E-16 109.4 10.7 108 65-191 8-118 (347)
138 3sb4_A Hypothetical leucine ri 99.3 4.6E-12 1.6E-16 109.3 9.2 182 76-260 49-309 (329)
139 3un9_A NLR family member X1; l 99.2 1.2E-13 4.1E-18 121.4 -4.9 163 100-262 71-253 (372)
140 3ogk_B Coronatine-insensitive 99.2 5.5E-13 1.9E-17 123.6 -2.5 65 175-239 462-528 (592)
141 3sb4_A Hypothetical leucine ri 99.2 1.2E-10 4.2E-15 100.3 10.3 162 76-244 101-317 (329)
142 3ogk_B Coronatine-insensitive 99.1 3.3E-12 1.1E-16 118.3 -0.3 151 77-232 139-326 (592)
143 3rw6_A Nuclear RNA export fact 99.0 8.6E-13 2.9E-17 110.2 -8.0 163 63-230 76-257 (267)
144 2p1m_B Transport inhibitor res 99.0 3.3E-12 1.1E-16 118.4 -5.9 113 124-237 371-494 (594)
145 2p1m_B Transport inhibitor res 99.0 1.7E-11 5.8E-16 113.6 -1.3 109 76-186 105-221 (594)
146 2ra8_A Uncharacterized protein 98.9 3.8E-10 1.3E-14 98.6 3.4 160 76-239 139-322 (362)
147 4fdw_A Leucine rich hypothetic 98.9 1.7E-08 5.9E-13 89.3 12.3 175 77-259 158-356 (401)
148 2ra8_A Uncharacterized protein 98.8 6.3E-10 2.1E-14 97.2 1.3 180 75-261 106-320 (362)
149 1io0_A Tropomodulin; LRR prote 98.7 1.5E-09 5.2E-14 85.7 1.0 117 123-239 34-166 (185)
150 4fdw_A Leucine rich hypothetic 98.7 7.3E-08 2.5E-12 85.3 11.7 147 77-232 136-308 (401)
151 1io0_A Tropomodulin; LRR prote 98.6 5.4E-09 1.8E-13 82.6 1.0 118 96-213 31-164 (185)
152 3rw6_A Nuclear RNA export fact 98.5 1.7E-07 5.9E-12 78.0 6.3 82 122-206 167-257 (267)
153 3e4g_A ATP synthase subunit S, 98.1 1.1E-06 3.9E-11 68.2 2.6 36 125-160 61-96 (176)
154 3e4g_A ATP synthase subunit S, 98.0 2.5E-06 8.5E-11 66.3 3.3 84 101-187 61-150 (176)
155 4gt6_A Cell surface protein; l 97.6 0.00034 1.2E-08 61.3 9.6 111 119-236 259-369 (394)
156 1pgv_A TMD-1, tropomodulin TMD 97.5 3.7E-05 1.3E-09 60.8 2.6 62 176-237 98-170 (197)
157 4fs7_A Uncharacterized protein 97.4 0.00095 3.2E-08 58.4 10.5 127 97-233 249-375 (394)
158 4h09_A Hypothetical leucine ri 97.3 0.0012 4.3E-08 57.2 9.7 130 97-233 213-342 (379)
159 3rfe_A Platelet glycoprotein I 97.2 0.0006 2.1E-08 50.1 5.8 57 153-213 12-68 (130)
160 4gt6_A Cell surface protein; l 97.2 0.0023 7.8E-08 56.0 10.2 85 143-233 259-343 (394)
161 4h09_A Hypothetical leucine ri 97.1 0.0022 7.4E-08 55.7 9.7 125 92-223 231-355 (379)
162 1pgv_A TMD-1, tropomodulin TMD 97.1 0.00017 5.6E-09 57.0 2.2 116 96-212 36-169 (197)
163 4fs7_A Uncharacterized protein 97.0 0.0035 1.2E-07 54.7 9.8 66 172-240 293-358 (394)
164 3rfe_A Platelet glycoprotein I 96.9 0.0021 7.2E-08 47.1 6.6 56 129-189 12-68 (130)
165 2lz0_A Uncharacterized protein 41.8 52 0.0018 22.1 5.1 14 144-157 38-51 (100)
166 2lz0_A Uncharacterized protein 35.2 52 0.0018 22.1 4.2 38 171-209 15-52 (100)
167 3ox7_P MH027; urokinase-type p 22.2 21 0.00071 16.5 0.2 9 63-71 6-14 (23)
No 1
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.3e-34 Score=249.91 Aligned_cols=223 Identities=28% Similarity=0.437 Sum_probs=181.7
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcc--cceeeeCCC---CCEEEEEecCCCccc--ccCccccCCCCCc
Q 038615 31 TNISIHVAASEIERQALLNGGWWKDRIPHNTSDHCN--WVGITCDYK---GSITHIELVECSIKG--ELGSLNFSCFPNL 103 (274)
Q Consensus 31 ~~~~~~~~~l~~~~~~l~~~~~~~~~~w~~~~~~c~--w~gv~c~~~---~~l~~L~l~~~~l~~--~l~~~~l~~l~~L 103 (274)
.+.+.|++|+.++|+++.++. .+.+|..+.++|. |.||+|+.. ++|++|+++++++.+ .++. .+.++++|
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~--~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~-~l~~l~~L 78 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT--TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPS-SLANLPYL 78 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG--GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCG-GGGGCTTC
T ss_pred CCCHHHHHHHHHHHHhcCCcc--cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccCh-hHhCCCCC
Confidence 467889999999999997765 5788987889998 999999854 799999999999998 8888 89999999
Q ss_pred cEEEccC-CCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEECCCCCCCCCcCCCchhccCCcccceee
Q 038615 104 QYLNLWN-NNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHLS 182 (274)
Q Consensus 104 ~~L~l~~-n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~lp~~l~~l~~L~~L~ 182 (274)
++|++++ |.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+ .+.+|..+..+++|++|+
T Consensus 79 ~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l---~~~~p~~~~~l~~L~~L~ 155 (313)
T 1ogq_A 79 NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL---SGTLPPSISSLPNLVGIT 155 (313)
T ss_dssp SEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEE---ESCCCGGGGGCTTCCEEE
T ss_pred CeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCcc---CCcCChHHhcCCCCCeEE
Confidence 9999995 999989999999999999999999999988999999999999999999998 567788888899999999
Q ss_pred cccccCCCCCchhhcCCC-CCCeeecccCcCCCCCchhccCCCCCCEEEccCCccCcccccCccccccccCCccCCccc
Q 038615 183 LITNKRTGAIPSTLGHLT-SLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKIRALQIIQPSISQSFIKPTFRPNTF 260 (274)
Q Consensus 183 l~~n~l~~~~p~~l~~l~-~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~ 260 (274)
+++|.+++.+|..+..++ +|++|++++|.+++.+|..+..++ |++|++++|++++..+....-...+..+++++|.+
T Consensus 156 L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l 233 (313)
T 1ogq_A 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233 (313)
T ss_dssp CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE
T ss_pred CcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCce
Confidence 999999888888888887 888888888887766666666655 66666666666554433222233344444444444
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.98 E-value=1e-32 Score=259.27 Aligned_cols=227 Identities=12% Similarity=0.169 Sum_probs=193.1
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCCC-------CCCCCCCCccc---ceeeeCCCCCEEEEEecCCCcccccCccccCCC
Q 038615 31 TNISIHVAASEIERQALLNGGWWKDR-------IPHNTSDHCNW---VGITCDYKGSITHIELVECSIKGELGSLNFSCF 100 (274)
Q Consensus 31 ~~~~~~~~~l~~~~~~l~~~~~~~~~-------~w~~~~~~c~w---~gv~c~~~~~l~~L~l~~~~l~~~l~~~~l~~l 100 (274)
+....|+.|+.++++++.++.|.... +|+.+.++|.| .||+|+..++|+.|+|+++++.|.+|+ .++++
T Consensus 26 ~~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~-~l~~L 104 (636)
T 4eco_A 26 AEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPD-AIGQL 104 (636)
T ss_dssp CHHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECG-GGGGC
T ss_pred hhHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCCCCEEEEEecCcccCCcCCh-HHhcC
Confidence 34456899999999999998886433 79999999999 999998889999999999999999998 99999
Q ss_pred CCccEEEccCCCC-------------------------------------------------------------------
Q 038615 101 PNLQYLNLWNNNL------------------------------------------------------------------- 113 (274)
Q Consensus 101 ~~L~~L~l~~n~l------------------------------------------------------------------- 113 (274)
++|++|++++|.+
T Consensus 105 ~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~ 184 (636)
T 4eco_A 105 TELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLK 184 (636)
T ss_dssp TTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCC
T ss_pred ccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchh
Confidence 9999999998843
Q ss_pred -----------CCCCCccCCCCCCCCeeeccCCcCCCc-----------------cchhcc--CCCCCcEEECCCCCCCC
Q 038615 114 -----------SGSIPPQIGSLSNLKYLNLRWNNLTGT-----------------IPTEIG--IFRNLEELYLPSNKLNG 163 (274)
Q Consensus 114 -----------~~~~p~~l~~l~~L~~L~L~~n~l~~~-----------------~p~~~~--~l~~L~~L~L~~n~l~~ 163 (274)
++ +|..++++++|++|+|++|.+++. +|+.++ .+++|++|++++|.+
T Consensus 185 ~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l-- 261 (636)
T 4eco_A 185 DTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPN-- 261 (636)
T ss_dssp TTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTT--
T ss_pred hhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcC--
Confidence 34 778889999999999999999985 899988 999999999999998
Q ss_pred CcCCCchhccCCcccceeeccccc-CCC-CCchhhcCC------CCCCeeecccCcCCCCCch--hccCCCCCCEEEccC
Q 038615 164 FNGTIPREIGNLKNLTHLSLITNK-RTG-AIPSTLGHL------TSLLYLDLSSNQLHSFIPL--EIGNFSALEELDLSD 233 (274)
Q Consensus 164 ~~~~lp~~l~~l~~L~~L~l~~n~-l~~-~~p~~l~~l------~~L~~L~ls~N~l~~~~p~--~l~~l~~L~~L~l~~ 233 (274)
.+.+|..+.++++|++|++++|+ +++ .+|..++.+ ++|++|++++|.++ .+|. .++++++|++|++++
T Consensus 262 -~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~ 339 (636)
T 4eco_A 262 -LTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLY 339 (636)
T ss_dssp -CSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCS
T ss_pred -CccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcC
Confidence 67899999999999999999998 888 788888776 89999999999998 6887 889999999999999
Q ss_pred CccCcccccCccccccccCCccCCccccCCC
Q 038615 234 NKIRALQIIQPSISQSFIKPTFRPNTFCNWK 264 (274)
Q Consensus 234 N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (274)
|+++|..+ ...-...+..+++++|.+..+|
T Consensus 340 N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp 369 (636)
T 4eco_A 340 NQLEGKLP-AFGSEIKLASLNLAYNQITEIP 369 (636)
T ss_dssp CCCEEECC-CCEEEEEESEEECCSSEEEECC
T ss_pred CcCccchh-hhCCCCCCCEEECCCCcccccc
Confidence 99985544 3333345555556665555443
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=6.8e-31 Score=251.81 Aligned_cols=222 Identities=25% Similarity=0.299 Sum_probs=164.2
Q ss_pred CCChhHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccceeeeCCCCCEEEEEecCCCcccc---cCc-------------
Q 038615 31 TNISIHVAASEIERQALLNGGWWKDRIPHNTSDHCNWVGITCDYKGSITHIELVECSIKGE---LGS------------- 94 (274)
Q Consensus 31 ~~~~~~~~~l~~~~~~l~~~~~~~~~~w~~~~~~c~w~gv~c~~~~~l~~L~l~~~~l~~~---l~~------------- 94 (274)
.....|++|+++||+++.|+. .+++|..+.|||.|.||+|+ .++|+.|+++++++.|. +++
T Consensus 8 ~~~~~~~~all~~k~~~~~~~--~l~~W~~~~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~ 84 (768)
T 3rgz_A 8 QSLYREIHQLISFKDVLPDKN--LLPDWSSNKNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFL 84 (768)
T ss_dssp CCHHHHHHHHHHHHTTCSCTT--SSTTCCTTSCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEEC
T ss_pred cCCHHHHHHHHHHHhhCCCcc--cccCCCCCCCCcCCcceEEC-CCcEEEEECCCCCcCCccCccChhHhccCcccccCC
Confidence 345678999999999998776 68999888899999999999 79999999999998876 432
Q ss_pred ---------cccCCCCCccEEEccCCCCCCCCCc--cCCCCCCCCeeeccCCcCCCccchhc-cCCCCCcEEECCCCCCC
Q 038615 95 ---------LNFSCFPNLQYLNLWNNNLSGSIPP--QIGSLSNLKYLNLRWNNLTGTIPTEI-GIFRNLEELYLPSNKLN 162 (274)
Q Consensus 95 ---------~~l~~l~~L~~L~l~~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~ 162 (274)
..++.+++|++|++++|.+.|.+|. .++.+++|++|++++|.+++.+|..+ ..+++|++|++++|.++
T Consensus 85 ~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 164 (768)
T 3rgz_A 85 SNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS 164 (768)
T ss_dssp TTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCE
T ss_pred cCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccC
Confidence 1577778888888888888877777 77888888888888888777666654 66777777777777663
Q ss_pred CCcCCCchh---c----------------------cCCcccceeecccccCCCCCchhhcCCCCCCeeecccCcCCCCCc
Q 038615 163 GFNGTIPRE---I----------------------GNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIP 217 (274)
Q Consensus 163 ~~~~~lp~~---l----------------------~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p 217 (274)
+..|.. + ..+++|++|++++|.+.+.+|. ++.+++|++|++++|.+++.+|
T Consensus 165 ---~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~ 240 (768)
T 3rgz_A 165 ---GANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFS 240 (768)
T ss_dssp ---EETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHH
T ss_pred ---CcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCccc
Confidence 222322 2 4556666666666666666655 6777777777777777777777
Q ss_pred hhccCCCCCCEEEccCCccCcccccCccccccccCCccCCcccc
Q 038615 218 LEIGNFSALEELDLSDNKIRALQIIQPSISQSFIKPTFRPNTFC 261 (274)
Q Consensus 218 ~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (274)
..+..+++|++|++++|++++..+.. ....++.+++.+|.+.
T Consensus 241 ~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~ 282 (768)
T 3rgz_A 241 RAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFT 282 (768)
T ss_dssp HHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEE
T ss_pred HHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccC
Confidence 77777777777777777777654432 3445666677777665
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=6.9e-31 Score=252.88 Aligned_cols=228 Identities=18% Similarity=0.227 Sum_probs=182.7
Q ss_pred ccCCChhHHHHHHHHHHHhcCCCCCCCCCCCCCCCC--ccc------------ceeeeCCCCCEEEEEecCCCcccccCc
Q 038615 29 SATNISIHVAASEIERQALLNGGWWKDRIPHNTSDH--CNW------------VGITCDYKGSITHIELVECSIKGELGS 94 (274)
Q Consensus 29 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~w~~~~~~--c~w------------~gv~c~~~~~l~~L~l~~~~l~~~l~~ 94 (274)
.++....|+.||.++|+++.+++|.....|. ..++ |.| .||+|+..++|+.|+|+++++.|.+|+
T Consensus 263 ~~~~~~~d~~ALl~~k~~l~~~~W~~~~~~~-~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~ip~ 341 (876)
T 4ecn_A 263 ETAEYIKDYKALKAIWEALDGKNWRYYSGTI-NNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPD 341 (876)
T ss_dssp CCCHHHHHHHHHHHHHHHTTGGGCCCCCSSC-SSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEEECG
T ss_pred ccccchHHHHHHHHHHHHcCCCCCCcCCCcc-cccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCcCch
Confidence 3445567999999999999888765444443 2455 999 999999889999999999999999998
Q ss_pred cccCCCCCccEEEc-cCCCCCCC---------------------------------------------------------
Q 038615 95 LNFSCFPNLQYLNL-WNNNLSGS--------------------------------------------------------- 116 (274)
Q Consensus 95 ~~l~~l~~L~~L~l-~~n~l~~~--------------------------------------------------------- 116 (274)
.++++++|++|+| ++|.+.|.
T Consensus 342 -~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~ 420 (876)
T 4ecn_A 342 -AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKD 420 (876)
T ss_dssp -GGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCC
T ss_pred -HHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccc
Confidence 9999999999999 77654332
Q ss_pred -------------------CCccCCCCCCCCeeeccCCcCCC-----------------ccchhcc--CCCCCcEEECCC
Q 038615 117 -------------------IPPQIGSLSNLKYLNLRWNNLTG-----------------TIPTEIG--IFRNLEELYLPS 158 (274)
Q Consensus 117 -------------------~p~~l~~l~~L~~L~L~~n~l~~-----------------~~p~~~~--~l~~L~~L~L~~ 158 (274)
+|..+.++++|++|+|++|.+++ .+|..++ .+++|++|++++
T Consensus 421 ~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~ 500 (876)
T 4ecn_A 421 SRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYN 500 (876)
T ss_dssp CCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEES
T ss_pred cccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcC
Confidence 77788899999999999999997 3888887 999999999999
Q ss_pred CCCCCCcCCCchhccCCcccceeeccccc-CCC-CCchhhcCCC-------CCCeeecccCcCCCCCch--hccCCCCCC
Q 038615 159 NKLNGFNGTIPREIGNLKNLTHLSLITNK-RTG-AIPSTLGHLT-------SLLYLDLSSNQLHSFIPL--EIGNFSALE 227 (274)
Q Consensus 159 n~l~~~~~~lp~~l~~l~~L~~L~l~~n~-l~~-~~p~~l~~l~-------~L~~L~ls~N~l~~~~p~--~l~~l~~L~ 227 (274)
|.+ .+.+|..+.++++|+.|++++|+ +++ .+|..++.++ +|++|++++|.++ .+|. .+.++++|+
T Consensus 501 N~l---~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~ 576 (876)
T 4ecn_A 501 CPN---MTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLG 576 (876)
T ss_dssp CTT---CCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCC
T ss_pred CCC---CccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCC
Confidence 988 67889889999999999999998 887 7777666554 8888888888888 5777 788888888
Q ss_pred EEEccCCccCcccccCccccccccCCccCCccccCCC
Q 038615 228 ELDLSDNKIRALQIIQPSISQSFIKPTFRPNTFCNWK 264 (274)
Q Consensus 228 ~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (274)
+|++++|+++.++ .......+..+++++|.|..+|
T Consensus 577 ~L~Ls~N~l~~lp--~~~~L~~L~~L~Ls~N~l~~lp 611 (876)
T 4ecn_A 577 LLDCVHNKVRHLE--AFGTNVKLTDLKLDYNQIEEIP 611 (876)
T ss_dssp EEECTTSCCCBCC--CCCTTSEESEEECCSSCCSCCC
T ss_pred EEECCCCCcccch--hhcCCCcceEEECcCCccccch
Confidence 8888888887443 2233345555666666655544
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=9.1e-29 Score=214.61 Aligned_cols=200 Identities=19% Similarity=0.214 Sum_probs=138.4
Q ss_pred CCChhHHHHHHHHHHHhc-CCCCCCCCCC----CCCCCCcccceeeeC---------CCCCEEEEEecCCCcccccCccc
Q 038615 31 TNISIHVAASEIERQALL-NGGWWKDRIP----HNTSDHCNWVGITCD---------YKGSITHIELVECSIKGELGSLN 96 (274)
Q Consensus 31 ~~~~~~~~~l~~~~~~l~-~~~~~~~~~w----~~~~~~c~w~gv~c~---------~~~~l~~L~l~~~~l~~~l~~~~ 96 (274)
+...++..|+..||+.+. ++. .....| ....++|.|.|+.|+ ...+++.|+++++++. .+|. .
T Consensus 23 ~~~~~~~~aLl~~k~~~~~~~~-~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~-~ 99 (328)
T 4fcg_A 23 TALRPYHDVLSQWQRHYNADRN-RWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPD-Q 99 (328)
T ss_dssp CCCCCHHHHHHHHHHHHHHCCT-THHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCS-C
T ss_pred ccCchHHHHHHHHHHhccCCch-hhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcCh-h
Confidence 345578999999999884 332 234678 447789999999995 2368999999999988 7777 6
Q ss_pred cCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEECCCCCCCCCcCCCchhccC--
Q 038615 97 FSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGN-- 174 (274)
Q Consensus 97 l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~lp~~l~~-- 174 (274)
+..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..++.+++|++|++++|++ .+.+|..+..
T Consensus 100 l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~---~~~~p~~~~~~~ 174 (328)
T 4fcg_A 100 AFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPE---LTELPEPLASTD 174 (328)
T ss_dssp GGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETT---CCCCCSCSEEEC
T ss_pred hhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCC---ccccChhHhhcc
Confidence 778888888888888888 78888888888888888888888 7788888888888888888765 3344444332
Q ss_pred -------CcccceeecccccCCCCCchhhcCCCCCCeeecccCcCCCCCchhccCCCCCCEEEccCCccCccc
Q 038615 175 -------LKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKIRALQ 240 (274)
Q Consensus 175 -------l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~ 240 (274)
+++|++|++++|.++ .+|..++.+++|++|++++|.+++ +|..+..+++|++|++++|++.+..
T Consensus 175 ~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~ 245 (328)
T 4fcg_A 175 ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNY 245 (328)
T ss_dssp -CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBC
T ss_pred chhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhh
Confidence 555555555555555 445555555555555555555554 3334555555555555555544443
No 6
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=2e-25 Score=188.26 Aligned_cols=180 Identities=25% Similarity=0.249 Sum_probs=122.2
Q ss_pred CEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEEC
Q 038615 77 SITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYL 156 (274)
Q Consensus 77 ~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 156 (274)
.++.|++++|++.+ ++...+..+++|++|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 38 ~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 38 DTKKLDLQSNKLSS-LPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp TCSEEECCSSCCSC-CCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred CCCEEECcCCCCCe-eCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence 35666666666663 33325677777777777777776444444567777777777777777555555677777777777
Q ss_pred CCCCCCCCcCCCchhccCCcccceeecccccCCCCCchhhcCCCCCCeeecccCcCCCCCchhccCCCCCCEEEccCCcc
Q 038615 157 PSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKI 236 (274)
Q Consensus 157 ~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l 236 (274)
++|.++. ..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++
T Consensus 117 ~~n~l~~---~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (270)
T 2o6q_A 117 DRNQLKS---LPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193 (270)
T ss_dssp CSSCCCC---CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCccCe---eCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcC
Confidence 7777742 2334467777778888887777766555677777788888888877776666677777888888888877
Q ss_pred CcccccCccccccccCCccCCccc
Q 038615 237 RALQIIQPSISQSFIKPTFRPNTF 260 (274)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~ 260 (274)
++.+.....-...+..+++++|.+
T Consensus 194 ~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 194 KRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CcCCHHHhccccCCCEEEecCCCe
Confidence 776554333344566667777765
No 7
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.92 E-value=1.4e-24 Score=181.16 Aligned_cols=191 Identities=22% Similarity=0.222 Sum_probs=142.9
Q ss_pred CEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEEC
Q 038615 77 SITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYL 156 (274)
Q Consensus 77 ~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 156 (274)
.++.|++++|++.+..+. .+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 36 ~l~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDA-TFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TCCEEECTTSCCCCCCTT-TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEccCCCcCccCHh-HhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 578889999988865555 7888999999999999998777777888999999999999998666677888899999999
Q ss_pred CCCCCCCCcCCCchhccCCcccceeecccccCCCCCchhhcCCCCCCeeecccCcCCCCCchhccCCCCCCEEEccCCcc
Q 038615 157 PSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKI 236 (274)
Q Consensus 157 ~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l 236 (274)
++|+++. ..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|++
T Consensus 115 ~~N~l~~---~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 115 GGNQLKS---LPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp CSSCCCC---CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred CCCcCCC---cChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence 9998852 2234467888999999999999877776788889999999999999887777888889999999999998
Q ss_pred CcccccCcccc----c-cccCCccCCccccCCCCCccccC
Q 038615 237 RALQIIQPSIS----Q-SFIKPTFRPNTFCNWKTLQPCVS 271 (274)
Q Consensus 237 ~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~l~~c~~ 271 (274)
+........+. . .....+..++.++..+.-..|+.
T Consensus 192 ~c~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~ 231 (251)
T 3m19_A 192 DCSRCEILYLSQWIRENSNKVKDGTGQNLHESPDGVTCSD 231 (251)
T ss_dssp CTTSTTHHHHHHHHHHSGGGBCC-------CCGGGCBBTT
T ss_pred eCCccccHHHHHHHHhcccceeeccCcccccCCCcCccCC
Confidence 77522111111 1 11222455666777777777764
No 8
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.92 E-value=3.7e-25 Score=190.58 Aligned_cols=190 Identities=25% Similarity=0.381 Sum_probs=142.3
Q ss_pred CCEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCC-CCcEE
Q 038615 76 GSITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFR-NLEEL 154 (274)
Q Consensus 76 ~~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L 154 (274)
.+++.|++++|.+.+.++. .+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+..++ +|++|
T Consensus 101 ~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L 179 (313)
T 1ogq_A 101 TQLHYLYITHTNVSGAIPD-FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSM 179 (313)
T ss_dssp TTCSEEEEEEECCEEECCG-GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEE
T ss_pred CCCCEEECcCCeeCCcCCH-HHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEE
Confidence 4688899999999888887 888899999999999998888888888888999999999988888888888887 88888
Q ss_pred ECCCCCCCC--------------------CcCCCchhccCCcccceeecccccCCCCCchhhcCCCCCCeeecccCcCCC
Q 038615 155 YLPSNKLNG--------------------FNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHS 214 (274)
Q Consensus 155 ~L~~n~l~~--------------------~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 214 (274)
++++|++++ +.+..|..+..+++|++|++++|.+++.+|. +..+++|++|++++|.+++
T Consensus 180 ~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~ 258 (313)
T 1ogq_A 180 TISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYG 258 (313)
T ss_dssp ECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEE
T ss_pred ECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccC
Confidence 888887631 0123344455566666666666666655444 5666777788888888877
Q ss_pred CCchhccCCCCCCEEEccCCccCcccccCccccccccCCccCCcc-ccCCCCCccc
Q 038615 215 FIPLEIGNFSALEELDLSDNKIRALQIIQPSISQSFIKPTFRPNT-FCNWKTLQPC 269 (274)
Q Consensus 215 ~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~c 269 (274)
.+|..+..+++|++|++++|+++|..+.. .-...+..+++.+|. +|+. ++.+|
T Consensus 259 ~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~-p~~~C 312 (313)
T 1ogq_A 259 TLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGS-PLPAC 312 (313)
T ss_dssp CCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEEST-TSSCC
T ss_pred cCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCC-CCCCC
Confidence 77888888888888888888888765543 334456677788886 7774 44566
No 9
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.92 E-value=7.2e-25 Score=210.04 Aligned_cols=119 Identities=34% Similarity=0.510 Sum_probs=81.1
Q ss_pred CCCcEEECCCCCCCCCcCCCchhccCCcccceeecccccCCCCCchhhcCCCCCCeeecccCcCCCCCchhccCCCCCCE
Q 038615 149 RNLEELYLPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEE 228 (274)
Q Consensus 149 ~~L~~L~L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~ 228 (274)
++|++|++++|++ .|.+|..++++++|+.|++++|.++|.+|..++.+++|+.|++++|+++|.+|..+..+++|++
T Consensus 632 ~~L~~LdLs~N~l---~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~ 708 (768)
T 3rgz_A 632 GSMMFLDMSYNML---SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTE 708 (768)
T ss_dssp BCCCEEECCSSCC---BSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSE
T ss_pred ccccEEECcCCcc---cccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCE
Confidence 3455555555555 4566777777777777777777777777777777777777777777777777777777777777
Q ss_pred EEccCCccCcccccCccccccccCCccCCcc-ccCCCCCccccCC
Q 038615 229 LDLSDNKIRALQIIQPSISQSFIKPTFRPNT-FCNWKTLQPCVSR 272 (274)
Q Consensus 229 L~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~c~~~ 272 (274)
|++++|+++|.+|.... ...+....+.+|. +|+.| +.+|...
T Consensus 709 L~ls~N~l~g~iP~~~~-~~~~~~~~~~gN~~Lcg~~-l~~C~~~ 751 (768)
T 3rgz_A 709 IDLSNNNLSGPIPEMGQ-FETFPPAKFLNNPGLCGYP-LPRCDPS 751 (768)
T ss_dssp EECCSSEEEEECCSSSS-GGGSCGGGGCSCTEEESTT-SCCCCSC
T ss_pred EECcCCcccccCCCchh-hccCCHHHhcCCchhcCCC-CcCCCCC
Confidence 77777777776654322 2334445566764 88854 5688754
No 10
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=3.2e-23 Score=174.72 Aligned_cols=197 Identities=23% Similarity=0.273 Sum_probs=167.8
Q ss_pred CCCcccceeeeCCCCCEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCcc
Q 038615 62 SDHCNWVGITCDYKGSITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTI 141 (274)
Q Consensus 62 ~~~c~w~gv~c~~~~~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 141 (274)
.+.|.|.|+.|...+..+.+++++++++ .+|. .+. +++++|++++|.+++..+..|..+++|++|++++|.++...
T Consensus 2 ~~~C~~~~~~C~c~~~~~~l~~~~~~l~-~ip~-~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~ 77 (270)
T 2o6q_A 2 EALCKKDGGVCSCNNNKNSVDCSSKKLT-AIPS-NIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP 77 (270)
T ss_dssp CCCBGGGTCSBEEETTTTEEECTTSCCS-SCCS-CCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred CccCCCCCCCCEeCCCCCEEEccCCCCC-ccCC-CCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence 5789999999987677789999999998 5766 343 68999999999999766678999999999999999999555
Q ss_pred chhccCCCCCcEEECCCCCCCCCcCCCchhccCCcccceeecccccCCCCCchhhcCCCCCCeeecccCcCCCCCchhcc
Q 038615 142 PTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIG 221 (274)
Q Consensus 142 p~~~~~l~~L~~L~L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~ 221 (274)
+..+..+++|++|++++|.++. ..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.
T Consensus 78 ~~~~~~l~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 154 (270)
T 2o6q_A 78 AGIFKELKNLETLWVTDNKLQA---LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFD 154 (270)
T ss_dssp TTTTSSCTTCCEEECCSSCCCC---CCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred hhhhcCCCCCCEEECCCCcCCc---CCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHcc
Confidence 5567889999999999999953 2234578899999999999999988888889999999999999999987677789
Q ss_pred CCCCCCEEEccCCccCcccccCccccccccCCccCCccccCCCC
Q 038615 222 NFSALEELDLSDNKIRALQIIQPSISQSFIKPTFRPNTFCNWKT 265 (274)
Q Consensus 222 ~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (274)
.+++|++|++++|++++.++....-...+..+++++|.|.+++.
T Consensus 155 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 198 (270)
T 2o6q_A 155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPE 198 (270)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCH
Confidence 99999999999999999876544445678888899998887764
No 11
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=3.5e-23 Score=172.67 Aligned_cols=191 Identities=22% Similarity=0.232 Sum_probs=164.0
Q ss_pred CCcccceeeeCCCCCEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccc
Q 038615 63 DHCNWVGITCDYKGSITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIP 142 (274)
Q Consensus 63 ~~c~w~gv~c~~~~~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 142 (274)
+++.|.|.+|.. ..++++++++++. .+|. .+. ++++.|++++|.+.+..+..+..+++|++|++++|.+++..+
T Consensus 3 ~Cp~~~gC~C~~--~~~~l~~~~~~l~-~~p~-~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 76 (251)
T 3m19_A 3 TCETVTGCTCNE--GKKEVDCQGKSLD-SVPS-GIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76 (251)
T ss_dssp -CHHHHSSEEEG--GGTEEECTTCCCS-SCCS-CCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred cCCCCCceEcCC--CCeEEecCCCCcc-ccCC-CCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence 567899999952 3457899999998 6776 443 689999999999998888889999999999999999998878
Q ss_pred hhccCCCCCcEEECCCCCCCCCcCCCchhccCCcccceeecccccCCCCCchhhcCCCCCCeeecccCcCCCCCchhccC
Q 038615 143 TEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGN 222 (274)
Q Consensus 143 ~~~~~l~~L~~L~L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~ 222 (274)
..+..+++|++|++++|.++ +..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..
T Consensus 77 ~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 153 (251)
T 3m19_A 77 GVFDDLTELGTLGLANNQLA---SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDK 153 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCC---CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred hHhccCCcCCEEECCCCccc---ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCc
Confidence 88999999999999999995 333456789999999999999999877777899999999999999999877778999
Q ss_pred CCCCCEEEccCCccCcccccCccccccccCCccCCccccC
Q 038615 223 FSALEELDLSDNKIRALQIIQPSISQSFIKPTFRPNTFCN 262 (274)
Q Consensus 223 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (274)
+++|++|++++|++++.++....-...+..+++.+|.|..
T Consensus 154 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 154 LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred CcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 9999999999999998876544445677888899998854
No 12
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.91 E-value=2e-23 Score=177.09 Aligned_cols=182 Identities=21% Similarity=0.158 Sum_probs=85.4
Q ss_pred CEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCc-CCCccchhccCCCCCcEEE
Q 038615 77 SITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNN-LTGTIPTEIGIFRNLEELY 155 (274)
Q Consensus 77 ~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~ 155 (274)
.++.|+++++.+.+..+. .+..+++|++|++++|.+++..+..+..+++|++|++++|. ++...|..+..+++|++|+
T Consensus 33 ~l~~L~l~~n~i~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAA-SFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TCSEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CceEEEeeCCcCCccCHH-HcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 455555555555532222 45555555555555555554444455555555555555554 4433344455555555555
Q ss_pred CCCCCCCCCcCCCchhccCCcccceeecccccCCCCCchhhcCCCCCCeeecccCcCCCCCchhccCCCCCCEEEccCCc
Q 038615 156 LPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNK 235 (274)
Q Consensus 156 L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N~ 235 (274)
+++|.++ +..|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|+
T Consensus 112 l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 188 (285)
T 1ozn_A 112 LDRCGLQ---ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR 188 (285)
T ss_dssp CTTSCCC---CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCCCcCC---EECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCc
Confidence 5555542 2223334444555555555555544433344444455555555554444333334444444444444444
Q ss_pred cCcccccCccccccccCCccCCccccC
Q 038615 236 IRALQIIQPSISQSFIKPTFRPNTFCN 262 (274)
Q Consensus 236 l~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (274)
+++..+....-...+..+++++|.|.+
T Consensus 189 l~~~~~~~~~~l~~L~~L~l~~n~l~~ 215 (285)
T 1ozn_A 189 VAHVHPHAFRDLGRLMTLYLFANNLSA 215 (285)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred ccccCHhHccCcccccEeeCCCCcCCc
Confidence 444433222222333444444444433
No 13
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.90 E-value=1.1e-23 Score=180.49 Aligned_cols=195 Identities=24% Similarity=0.296 Sum_probs=110.0
Q ss_pred CcccceeeeCCC----------CCEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCC--CCcc-----------
Q 038615 64 HCNWVGITCDYK----------GSITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGS--IPPQ----------- 120 (274)
Q Consensus 64 ~c~w~gv~c~~~----------~~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~--~p~~----------- 120 (274)
.|.|.++.|... .++++|++++|++. .++...+.++++|++|++++|.++.. .+..
T Consensus 6 ~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 84 (306)
T 2z66_A 6 SCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84 (306)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred eeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEE
Confidence 478888988642 37889999999887 56553578888888888888877621 1222
Q ss_pred ------------CCCCCCCCeeeccCCcCCCccc-hhccCCCCCcEEECCCCCCCCCcCCCchhccCCcccceeeccccc
Q 038615 121 ------------IGSLSNLKYLNLRWNNLTGTIP-TEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHLSLITNK 187 (274)
Q Consensus 121 ------------l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~ 187 (274)
+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+ .+..+..+..+++|++|++++|.
T Consensus 85 Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l---~~~~~~~~~~l~~L~~L~l~~n~ 161 (306)
T 2z66_A 85 LSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT---RVAFNGIFNGLSSLEVLKMAGNS 161 (306)
T ss_dssp CCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCC---EECSTTTTTTCTTCCEEECTTCE
T ss_pred CCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcC---CccchhhcccCcCCCEEECCCCc
Confidence 3334444444444444442222 2344445555555555544 22333444555555555555555
Q ss_pred CCC-CCchhhcCCCCCCeeecccCcCCCCCchhccCCCCCCEEEccCCccCcccccCccccccccCCccCCccccC
Q 038615 188 RTG-AIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKIRALQIIQPSISQSFIKPTFRPNTFCN 262 (274)
Q Consensus 188 l~~-~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (274)
+.+ .+|..+..+++|++|++++|.+++..|..+..+++|++|++++|++++.+.........+..+++++|.+.+
T Consensus 162 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 237 (306)
T 2z66_A 162 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 237 (306)
T ss_dssp EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCB
T ss_pred cccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcc
Confidence 544 344455555566666666666655555555556666666666666655544333333445555555555544
No 14
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.90 E-value=4.1e-24 Score=186.89 Aligned_cols=198 Identities=21% Similarity=0.236 Sum_probs=163.7
Q ss_pred CCCCcccceeeeCC------------CCCEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCC
Q 038615 61 TSDHCNWVGITCDY------------KGSITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLK 128 (274)
Q Consensus 61 ~~~~c~w~gv~c~~------------~~~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~ 128 (274)
....|.|.|+ |+. ..++++|++++|++.+ ++...+.++++|++|++++|.+++..+..+..+++|+
T Consensus 26 ~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (353)
T 2z80_A 26 ASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITY-ISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103 (353)
T ss_dssp -CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred cCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcc-cCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCC
Confidence 4567777776 542 1379999999999985 4443799999999999999999987788899999999
Q ss_pred eeeccCCcCCCccchhccCCCCCcEEECCCCCCCCCcCCCch--hccCCcccceeeccccc-CCCCCchhhcCCCCCCee
Q 038615 129 YLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPR--EIGNLKNLTHLSLITNK-RTGAIPSTLGHLTSLLYL 205 (274)
Q Consensus 129 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~lp~--~l~~l~~L~~L~l~~n~-l~~~~p~~l~~l~~L~~L 205 (274)
+|++++|.+++..+..++.+++|++|++++|.++ .+|. .+..+++|++|++++|. +.+..+..+..+++|++|
T Consensus 104 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~----~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 179 (353)
T 2z80_A 104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK----TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL 179 (353)
T ss_dssp EEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS----SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE
T ss_pred EEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc----ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEE
Confidence 9999999999655555899999999999999995 3444 68889999999999994 666667788999999999
Q ss_pred ecccCcCCCCCchhccCCCCCCEEEccCCccCcccccCccccccccCCccCCccccCCC
Q 038615 206 DLSSNQLHSFIPLEIGNFSALEELDLSDNKIRALQIIQPSISQSFIKPTFRPNTFCNWK 264 (274)
Q Consensus 206 ~ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (274)
++++|.+++..|..+..+++|++|++++|+++..+.........+..+++++|.+.+.+
T Consensus 180 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 238 (353)
T 2z80_A 180 EIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFH 238 (353)
T ss_dssp EEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCC
T ss_pred ECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccc
Confidence 99999999988999999999999999999997765443333456777788888877754
No 15
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.90 E-value=4.2e-23 Score=175.15 Aligned_cols=183 Identities=23% Similarity=0.222 Sum_probs=155.2
Q ss_pred CCCEEEEEecCCCcccccCccccCCCCCccEEEccCCC-CCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcE
Q 038615 75 KGSITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNN-LSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEE 153 (274)
Q Consensus 75 ~~~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 153 (274)
..+++.|++++|.+.+..+. .+..+++|++|++++|. +....+..+..+++|++|++++|.+++..|..+..+++|++
T Consensus 55 ~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 133 (285)
T 1ozn_A 55 CRNLTILWLHSNVLARIDAA-AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQY 133 (285)
T ss_dssp CTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCCEEECCCCccceeCHh-hcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCE
Confidence 35799999999999865566 89999999999999997 77666888999999999999999999777888999999999
Q ss_pred EECCCCCCCCCcCCCchhccCCcccceeecccccCCCCCchhhcCCCCCCeeecccCcCCCCCchhccCCCCCCEEEccC
Q 038615 154 LYLPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSD 233 (274)
Q Consensus 154 L~L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~ 233 (274)
|++++|.++. ..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|+.|++++
T Consensus 134 L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 210 (285)
T 1ozn_A 134 LYLQDNALQA---LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210 (285)
T ss_dssp EECCSSCCCC---CCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EECCCCcccc---cCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCC
Confidence 9999999852 2334578899999999999999877667788999999999999999998889999999999999999
Q ss_pred CccCcccccCccccccccCCccCCcccc
Q 038615 234 NKIRALQIIQPSISQSFIKPTFRPNTFC 261 (274)
Q Consensus 234 N~l~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (274)
|++++.++....-...+..+++++|.|.
T Consensus 211 n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 211 NNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp SCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred CcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 9999876543344456777788888765
No 16
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.90 E-value=7.2e-23 Score=184.77 Aligned_cols=186 Identities=21% Similarity=0.228 Sum_probs=126.4
Q ss_pred CCEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEE
Q 038615 76 GSITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELY 155 (274)
Q Consensus 76 ~~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 155 (274)
.+++.|++++|++.+..+. .|.++++|++|++++|.+++..+..|..+++|++|+|++|.+++..+..+..+++|++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQAD-TFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCceECHH-HcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 3688999999998865555 788889999999999988877777888888888888888888865556677888888888
Q ss_pred CCCCCCCCCcC---------------------CCc-hhccCCcccceeecccccCCCCCchhhcCCCCCCeeecccCcCC
Q 038615 156 LPSNKLNGFNG---------------------TIP-REIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLH 213 (274)
Q Consensus 156 L~~n~l~~~~~---------------------~lp-~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~ 213 (274)
+++|.++.+.. .++ ..+..+++|++|++++|.+++. | .+..+++|+.|++++|.++
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~ 231 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFP 231 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCS
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCc
Confidence 88887753221 011 1244555666666666666542 2 3555566666666666666
Q ss_pred CCCchhccCCCCCCEEEccCCccCcccccCccccccccCCccCCccccCCC
Q 038615 214 SFIPLEIGNFSALEELDLSDNKIRALQIIQPSISQSFIKPTFRPNTFCNWK 264 (274)
Q Consensus 214 ~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (274)
+..|..+..+++|++|++++|++++..+....-...+..+++++|.|.+++
T Consensus 232 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 282 (452)
T 3zyi_A 232 EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLP 282 (452)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccC
Confidence 666666666666666666666666655443333445556666666665554
No 17
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=2.4e-23 Score=180.43 Aligned_cols=176 Identities=24% Similarity=0.309 Sum_probs=108.2
Q ss_pred CCEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccC--------
Q 038615 76 GSITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGI-------- 147 (274)
Q Consensus 76 ~~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~-------- 147 (274)
.+++.|++++|.+. .+|. .+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+.+|..+..
T Consensus 104 ~~L~~L~L~~n~l~-~lp~-~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~ 180 (328)
T 4fcg_A 104 SHLQHMTIDAAGLM-ELPD-TMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQ 180 (328)
T ss_dssp TTCSEEEEESSCCC-CCCS-CGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEE
T ss_pred CCCCEEECCCCCcc-chhH-HHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhc
Confidence 35677777777776 6666 6667777777777777776 56666666777777777766666666655443
Q ss_pred -CCCCcEEECCCCCCCCCcCCCchhccCCcccceeecccccCCCCCchhhcCCCCCCeeecccCcCCCCCchhccCCCCC
Q 038615 148 -FRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSAL 226 (274)
Q Consensus 148 -l~~L~~L~L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L 226 (274)
+++|++|++++|.++ .+|..+..+++|++|++++|.+++ +|..+..+++|++|++++|.+.+.+|..+..+++|
T Consensus 181 ~l~~L~~L~L~~n~l~----~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L 255 (328)
T 4fcg_A 181 GLVNLQSLRLEWTGIR----SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL 255 (328)
T ss_dssp ESTTCCEEEEEEECCC----CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCC
T ss_pred cCCCCCEEECcCCCcC----cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCC
Confidence 666666666666663 445556666666666666666663 34455666666666666666666666666666666
Q ss_pred CEEEccCCccCcccccCccccccccCCccCCcc
Q 038615 227 EELDLSDNKIRALQIIQPSISQSFIKPTFRPNT 259 (274)
Q Consensus 227 ~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~ 259 (274)
++|++++|++.+..+....-...+..+++++|.
T Consensus 256 ~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~ 288 (328)
T 4fcg_A 256 KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV 288 (328)
T ss_dssp CEEECTTCTTCCBCCTTGGGCTTCCEEECTTCT
T ss_pred CEEECCCCCchhhcchhhhcCCCCCEEeCCCCC
Confidence 666666665555544333333444555555543
No 18
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=7.9e-23 Score=172.67 Aligned_cols=183 Identities=24% Similarity=0.242 Sum_probs=132.6
Q ss_pred CEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEEC
Q 038615 77 SITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYL 156 (274)
Q Consensus 77 ~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 156 (274)
.++.|++++|++.+..+. .+.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 29 ~l~~L~ls~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSY-SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TCCEEECTTCCCCEECTT-TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CccEEECCCCcccccCHh-HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 588899999888854444 7888888999999998888666667888888999999988888776677888888888888
Q ss_pred CCCCCCCCcCCCchhccCCcccceeecccccCCC-CCchhhcCCCCCCeeecccCcCCCCCchhccCCCCCC----EEEc
Q 038615 157 PSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTG-AIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALE----ELDL 231 (274)
Q Consensus 157 ~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~----~L~l 231 (274)
++|.++.+ .+..+..+++|++|++++|.+.+ .+|..+..+++|++|++++|++++..+..+..+++|+ .|++
T Consensus 108 ~~n~l~~~---~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~l 184 (276)
T 2z62_A 108 VETNLASL---ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184 (276)
T ss_dssp TTSCCCCS---TTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEEC
T ss_pred CCCCcccc---CchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeec
Confidence 88888532 23357788888888888888876 3577888888888888888888876555555544444 5666
Q ss_pred cCCccCcccccCccccccccCCccCCccccCCC
Q 038615 232 SDNKIRALQIIQPSISQSFIKPTFRPNTFCNWK 264 (274)
Q Consensus 232 ~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (274)
++|++++.++...... .+..+++++|.|.+++
T Consensus 185 s~n~l~~~~~~~~~~~-~L~~L~L~~n~l~~~~ 216 (276)
T 2z62_A 185 SLNPMNFIQPGAFKEI-RLKELALDTNQLKSVP 216 (276)
T ss_dssp CSSCCCEECTTSSCSC-CEEEEECCSSCCSCCC
T ss_pred CCCcccccCccccCCC-cccEEECCCCceeecC
Confidence 6666665543322222 3445555555555443
No 19
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.89 E-value=2.6e-23 Score=191.59 Aligned_cols=196 Identities=21% Similarity=0.232 Sum_probs=160.1
Q ss_pred CcccceeeeCCC------------CCEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeee
Q 038615 64 HCNWVGITCDYK------------GSITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLN 131 (274)
Q Consensus 64 ~c~w~gv~c~~~------------~~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 131 (274)
.|.|.|+ |+.. .+++.|++++|.+.+..+. .+.++++|++|++++|.+++..|..|..+++|++|+
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 80 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHG-DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLD 80 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSS-TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChh-hhhcCCcccEEECCCCCcCccChhhccccccCCEEE
Confidence 4888887 7632 3799999999999966666 899999999999999999988888999999999999
Q ss_pred ccCCcCCCccchhccCCCCCcEEECCCCCCCCCcCCCchhccCCcccceeecccccCCCCCc-hhhcCCCCCCeeecccC
Q 038615 132 LRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIP-STLGHLTSLLYLDLSSN 210 (274)
Q Consensus 132 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~ls~N 210 (274)
+++|.+++..|..++.+++|++|++++|.++. ..+|..+.++++|++|++++|.+.+.+| ..+..+++|++|++++|
T Consensus 81 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n 158 (549)
T 2z81_A 81 LSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQT--LGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158 (549)
T ss_dssp CTTSCCCSCCHHHHTTCTTCCEEECTTCCCSS--SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred CCCCccCccCHHHhccCCCCcEEECCCCcccc--cchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCC
Confidence 99999997777779999999999999999952 2456778999999999999998655554 57899999999999999
Q ss_pred cCCCCCchhccCCCCCCEEEccCCccCcccccCccccccccCCccCCccccCC
Q 038615 211 QLHSFIPLEIGNFSALEELDLSDNKIRALQIIQPSISQSFIKPTFRPNTFCNW 263 (274)
Q Consensus 211 ~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (274)
.+++..|..+..+++|++|++++|.++..+.........+..+++++|.+.+.
T Consensus 159 ~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 211 (549)
T 2z81_A 159 SLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARF 211 (549)
T ss_dssp TCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTC
T ss_pred cccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccc
Confidence 99998888888887777777777776654433222234556666666666654
No 20
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.89 E-value=7.8e-22 Score=162.37 Aligned_cols=167 Identities=25% Similarity=0.223 Sum_probs=136.7
Q ss_pred CCCCCCCCCCcccceeeeCCCCCEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccC
Q 038615 55 DRIPHNTSDHCNWVGITCDYKGSITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRW 134 (274)
Q Consensus 55 ~~~w~~~~~~c~w~gv~c~~~~~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~ 134 (274)
...|..+...|+|.+|.|.. +++. .+|. .+ .++|++|++++|.+++..|..+..+++|++|+|++
T Consensus 9 ~~~~~~~~~~Cs~~~v~c~~-----------~~l~-~ip~-~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 73 (229)
T 3e6j_A 9 HSAACPSQCSCSGTTVDCRS-----------KRHA-SVPA-GI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGS 73 (229)
T ss_dssp --CCCCTTCEEETTEEECTT-----------SCCS-SCCS-CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred hhccCCCCCEEeCCEeEccC-----------CCcC-ccCC-CC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCC
Confidence 34455578899999999963 2333 5555 33 37899999999999988888899999999999999
Q ss_pred CcCCCccchhccCCCCCcEEECCCCCCCCCcCCCchhccCCcccceeecccccCCCCCchhhcCCCCCCeeecccCcCCC
Q 038615 135 NNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHS 214 (274)
Q Consensus 135 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 214 (274)
|.++...+..+..+++|++|++++|+++. ..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++
T Consensus 74 N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~---l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~ 149 (229)
T 3e6j_A 74 NQLGALPVGVFDSLTQLTVLDLGTNQLTV---LPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKS 149 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCC---CCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCC
T ss_pred CCCCCcChhhcccCCCcCEEECCCCcCCc---cChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCc
Confidence 99985555667899999999999999953 23344788999999999999998 678888999999999999999998
Q ss_pred CCchhccCCCCCCEEEccCCccCccc
Q 038615 215 FIPLEIGNFSALEELDLSDNKIRALQ 240 (274)
Q Consensus 215 ~~p~~l~~l~~L~~L~l~~N~l~~~~ 240 (274)
..+..+..+++|+.|++++|+++..-
T Consensus 150 ~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 150 IPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred cCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 77778899999999999999988653
No 21
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=6.4e-22 Score=166.94 Aligned_cols=161 Identities=27% Similarity=0.224 Sum_probs=132.6
Q ss_pred CCCEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEE
Q 038615 75 KGSITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEEL 154 (274)
Q Consensus 75 ~~~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 154 (274)
..+++.|++++|.+.+ + . .+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..++.+++|++|
T Consensus 62 l~~L~~L~l~~n~l~~-~-~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 138 (272)
T 3rfs_A 62 LPNVRYLALGGNKLHD-I-S-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138 (272)
T ss_dssp CTTCCEEECTTSCCCC-C-G-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEECCCCCCCC-c-h-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEE
Confidence 3578889999998875 3 3 67888999999999999887666677888999999999999987666678888999999
Q ss_pred ECCCCCCCCCcCCCchhccCCcccceeecccccCCCCCchhhcCCCCCCeeecccCcCCCCCchhccCCCCCCEEEccCC
Q 038615 155 YLPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDN 234 (274)
Q Consensus 155 ~L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N 234 (274)
++++|.++ +..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 139 ~L~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 139 NLAHNQLQ---SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp ECCSSCCC---CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred ECCCCccC---ccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCC
Confidence 99999884 333445678889999999999988777777788899999999999998877777888899999999999
Q ss_pred ccCcccc
Q 038615 235 KIRALQI 241 (274)
Q Consensus 235 ~l~~~~~ 241 (274)
++.+..+
T Consensus 216 ~~~~~~~ 222 (272)
T 3rfs_A 216 PWDCTCP 222 (272)
T ss_dssp CBCCCTT
T ss_pred CccccCc
Confidence 8877643
No 22
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=6.1e-22 Score=168.71 Aligned_cols=178 Identities=21% Similarity=0.162 Sum_probs=148.2
Q ss_pred CCEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEE
Q 038615 76 GSITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELY 155 (274)
Q Consensus 76 ~~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 155 (274)
..++.|++++|.+.+..+. .+..+++|++|++++|.+++. +. ...+++|++|++++|.++ .+|..+..+++|++|+
T Consensus 31 ~~l~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~ 106 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLA-TLMPYTRLTQLNLDRAELTKL-QV-DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLD 106 (290)
T ss_dssp TTCCEEECTTSCCSEEEGG-GGTTCTTCCEEECTTSCCCEE-EC-CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEE
T ss_pred CCCCEEEcCCCcCCccCHH-HhhcCCCCCEEECCCCccCcc-cC-CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEE
Confidence 4789999999999865555 899999999999999999853 33 378899999999999998 7888888999999999
Q ss_pred CCCCCCCCCcCCCchhccCCcccceeecccccCCCCCchhhcCCCCCCeeecccCcCCCCCchhccCCCCCCEEEccCCc
Q 038615 156 LPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNK 235 (274)
Q Consensus 156 L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N~ 235 (274)
+++|+++. ..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|++|++++|+
T Consensus 107 l~~N~l~~---l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~ 183 (290)
T 1p9a_G 107 VSFNRLTS---LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENS 183 (290)
T ss_dssp CCSSCCCC---CCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCCcCcc---cCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCc
Confidence 99999953 334568899999999999999998777778899999999999999998666777889999999999999
Q ss_pred cCcccccCccccccccCCccCCcccc
Q 038615 236 IRALQIIQPSISQSFIKPTFRPNTFC 261 (274)
Q Consensus 236 l~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (274)
++.++...... ..+..+++.+|.+.
T Consensus 184 l~~ip~~~~~~-~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 184 LYTIPKGFFGS-HLLPFAFLHGNPWL 208 (290)
T ss_dssp CCCCCTTTTTT-CCCSEEECCSCCBC
T ss_pred CCccChhhccc-ccCCeEEeCCCCcc
Confidence 99775543322 25666777777753
No 23
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.88 E-value=8.7e-23 Score=175.62 Aligned_cols=186 Identities=18% Similarity=0.162 Sum_probs=147.7
Q ss_pred CCCEEEEEecCCCcccccCcccc--CCCCCccEEEccCCCCCCCCCccCCCC-----CCCCeeeccCCcCCCccchhccC
Q 038615 75 KGSITHIELVECSIKGELGSLNF--SCFPNLQYLNLWNNNLSGSIPPQIGSL-----SNLKYLNLRWNNLTGTIPTEIGI 147 (274)
Q Consensus 75 ~~~l~~L~l~~~~l~~~l~~~~l--~~l~~L~~L~l~~n~l~~~~p~~l~~l-----~~L~~L~L~~n~l~~~~p~~~~~ 147 (274)
..++++|++++|.+.+.++. .+ ..+++|++|++++|.+++. |..+..+ ++|++|++++|.+++..|..++.
T Consensus 94 l~~L~~L~L~~n~l~~~~~~-~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPP-PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCC-CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred cCCccEEEccCCcccchhHH-HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 45788999999999988877 54 8899999999999999876 7766665 89999999999999777788999
Q ss_pred CCCCcEEECCCCCCCCCcCC--Cchhc--cCCcccceeecccccCCC--CCc-hhhcCCCCCCeeecccCcCCCCCc-hh
Q 038615 148 FRNLEELYLPSNKLNGFNGT--IPREI--GNLKNLTHLSLITNKRTG--AIP-STLGHLTSLLYLDLSSNQLHSFIP-LE 219 (274)
Q Consensus 148 l~~L~~L~L~~n~l~~~~~~--lp~~l--~~l~~L~~L~l~~n~l~~--~~p-~~l~~l~~L~~L~ls~N~l~~~~p-~~ 219 (274)
+++|++|++++|++. +. +|..+ ..+++|++|++++|.+++ .++ ..+..+++|++|++++|.+++..| ..
T Consensus 172 l~~L~~L~Ls~N~l~---~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 248 (312)
T 1wwl_A 172 FPALSTLDLSDNPEL---GERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS 248 (312)
T ss_dssp CSSCCEEECCSCTTC---HHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSC
T ss_pred CCCCCEEECCCCCcC---cchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhh
Confidence 999999999999873 32 33444 788999999999999873 222 334577899999999999988764 45
Q ss_pred ccCCCCCCEEEccCCccCcccccCccccccccCCccCCccccCCCCCcc
Q 038615 220 IGNFSALEELDLSDNKIRALQIIQPSISQSFIKPTFRPNTFCNWKTLQP 268 (274)
Q Consensus 220 l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 268 (274)
+..+++|++|++++|+++.++.. +...+..+++++|+|.+.|....
T Consensus 249 ~~~l~~L~~L~Ls~N~l~~ip~~---~~~~L~~L~Ls~N~l~~~p~~~~ 294 (312)
T 1wwl_A 249 CDWPSQLNSLNLSFTGLKQVPKG---LPAKLSVLDLSYNRLDRNPSPDE 294 (312)
T ss_dssp CCCCTTCCEEECTTSCCSSCCSS---CCSEEEEEECCSSCCCSCCCTTT
T ss_pred hhhcCCCCEEECCCCccChhhhh---ccCCceEEECCCCCCCCChhHhh
Confidence 66778999999999999855432 23678888899999988865443
No 24
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.88 E-value=5.4e-22 Score=178.47 Aligned_cols=186 Identities=24% Similarity=0.249 Sum_probs=114.8
Q ss_pred CEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEEC
Q 038615 77 SITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYL 156 (274)
Q Consensus 77 ~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 156 (274)
.++.|++++|++.+..+. .|.++++|++|++++|.+++..+..|..+++|++|+|++|.++...+..+..+++|++|++
T Consensus 65 ~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKVN-SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TCSEEECCSCCCCEECTT-TTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCcEEEccCCcCCeeCHH-HhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 567777777777644334 6777777777777777776555566667777777777777776444445666667777777
Q ss_pred CCCCCCCCcC---------------------CCc-hhccCCcccceeecccccCCCCCchhhcCCCCCCeeecccCcCCC
Q 038615 157 PSNKLNGFNG---------------------TIP-REIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHS 214 (274)
Q Consensus 157 ~~n~l~~~~~---------------------~lp-~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 214 (274)
++|.++.+.. .++ ..+..+++|++|++++|.++. +| .+..+++|+.|++++|.+++
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCE
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCc
Confidence 7666542211 111 134556666666666666653 33 35556666666777776666
Q ss_pred CCchhccCCCCCCEEEccCCccCcccccCccccccccCCccCCccccCCCC
Q 038615 215 FIPLEIGNFSALEELDLSDNKIRALQIIQPSISQSFIKPTFRPNTFCNWKT 265 (274)
Q Consensus 215 ~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (274)
..|..|..+++|++|++++|++++..+..+.-...+..+++++|.|.+++.
T Consensus 222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 272 (440)
T 3zyj_A 222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPH 272 (440)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCT
T ss_pred cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccCh
Confidence 656666666666666666666666654444444555666666666665543
No 25
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.88 E-value=2.1e-22 Score=172.42 Aligned_cols=184 Identities=23% Similarity=0.281 Sum_probs=152.8
Q ss_pred CCCEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCC-ccCCCCCCCCeeeccCCcCCCccchhccCCCCCcE
Q 038615 75 KGSITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIP-PQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEE 153 (274)
Q Consensus 75 ~~~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 153 (274)
..+++.|++++|.+. .++. .+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 77 ~~~L~~L~Ls~n~i~-~l~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 154 (306)
T 2z66_A 77 TTSLKYLDLSFNGVI-TMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEV 154 (306)
T ss_dssp CSCCCEEECCSCSEE-EEEE-EEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCE
T ss_pred ccccCEEECCCCccc-cChh-hcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCE
Confidence 357888888888887 5666 68889999999999999886544 57888999999999999998888888889999999
Q ss_pred EECCCCCCCCCcCCCchhccCCcccceeecccccCCCCCchhhcCCCCCCeeecccCcCCCCCchhccCCCCCCEEEccC
Q 038615 154 LYLPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSD 233 (274)
Q Consensus 154 L~L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~ 233 (274)
|++++|.++ ...+|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 155 L~l~~n~l~--~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 232 (306)
T 2z66_A 155 LKMAGNSFQ--ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 232 (306)
T ss_dssp EECTTCEEG--GGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTT
T ss_pred EECCCCccc--cccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCC
Confidence 999999884 114677788999999999999999988888899999999999999999987777888999999999999
Q ss_pred CccCcccccCccc-cccccCCccCCccccC
Q 038615 234 NKIRALQIIQPSI-SQSFIKPTFRPNTFCN 262 (274)
Q Consensus 234 N~l~~~~~~~~~~-~~~~~~~~~~~~~~~~ 262 (274)
|++++..+....- ...+..+++++|.|..
T Consensus 233 N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 233 NHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp SCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred CCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 9998876543322 2467788888888754
No 26
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=1.4e-21 Score=166.45 Aligned_cols=154 Identities=28% Similarity=0.271 Sum_probs=89.5
Q ss_pred CCEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEE
Q 038615 76 GSITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELY 155 (274)
Q Consensus 76 ~~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 155 (274)
.+++.|++++|.+.+ ++. ...+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..+..+++|++|+
T Consensus 55 ~~L~~L~L~~n~l~~-~~~--~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~ 130 (290)
T 1p9a_G 55 TRLTQLNLDRAELTK-LQV--DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELY 130 (290)
T ss_dssp TTCCEEECTTSCCCE-EEC--CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEE
T ss_pred CCCCEEECCCCccCc-ccC--CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEE
Confidence 456666666666652 332 255666666666666665 4555556666666666666666644445566666666666
Q ss_pred CCCCCCCCCcCCCchhccCCcccceeecccccCCCCCchhhcCCCCCCeeecccCcCCCCCchhccCCCCCCEEEccCCc
Q 038615 156 LPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNK 235 (274)
Q Consensus 156 L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N~ 235 (274)
+++|+++. ..+..+..+++|+.|++++|++++..+..+..+++|++|++++|+++. +|..+...++|+.+++++|+
T Consensus 131 L~~N~l~~---~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~-ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 131 LKGNELKT---LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CTTSCCCC---CCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCCCSEEECCSCC
T ss_pred CCCCCCCc---cChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc-cChhhcccccCCeEEeCCCC
Confidence 66666632 122334556666666666666665444445556666666666666653 45555555566666666666
Q ss_pred cC
Q 038615 236 IR 237 (274)
Q Consensus 236 l~ 237 (274)
+.
T Consensus 207 ~~ 208 (290)
T 1p9a_G 207 WL 208 (290)
T ss_dssp BC
T ss_pred cc
Confidence 54
No 27
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=3.6e-22 Score=186.24 Aligned_cols=109 Identities=19% Similarity=0.151 Sum_probs=62.2
Q ss_pred EEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEECC
Q 038615 78 ITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLP 157 (274)
Q Consensus 78 l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 157 (274)
++.|++++|.+.+..+. .|..+++|++|++++|.+++..|..|+.+++|++|+|++|.+++..+..++.+++|++|+++
T Consensus 77 L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls 155 (597)
T 3oja_B 77 VELLNLNDLQIEEIDTY-AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS 155 (597)
T ss_dssp CSEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEECCCCCCCCCChH-HhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEee
Confidence 44555555555533333 55666666666666666665555555666666666666666663333334566666666666
Q ss_pred CCCCCCCcCCCchhccCCcccceeecccccCCC
Q 038615 158 SNKLNGFNGTIPREIGNLKNLTHLSLITNKRTG 190 (274)
Q Consensus 158 ~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~ 190 (274)
+|.+ .+..|..+..+++|++|++++|.+++
T Consensus 156 ~N~l---~~~~~~~~~~l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 156 NNNL---ERIEDDTFQATTSLQNLQLSSNRLTH 185 (597)
T ss_dssp SSCC---CBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred CCcC---CCCChhhhhcCCcCcEEECcCCCCCC
Confidence 6665 33334456666666666666666553
No 28
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.88 E-value=5.1e-22 Score=178.90 Aligned_cols=154 Identities=23% Similarity=0.320 Sum_probs=107.4
Q ss_pred CCcccce--eeeCCC---------CCEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCC-CccCCCCCCCCee
Q 038615 63 DHCNWVG--ITCDYK---------GSITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSI-PPQIGSLSNLKYL 130 (274)
Q Consensus 63 ~~c~w~g--v~c~~~---------~~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~-p~~l~~l~~L~~L 130 (274)
+.|.|.+ +.|+.. .++++|++++|.+.+..+. .+.++++|++|++++|.+.+.+ +..|..+++|++|
T Consensus 6 ~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L 84 (455)
T 3v47_A 6 SECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNET-SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIIL 84 (455)
T ss_dssp -CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTT-TTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEE
T ss_pred ceeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCChh-HhccCccccEEECcCCcccceECcccccccccCCEE
Confidence 4455544 666532 3688888888888865555 7888888888888888876544 4567788888888
Q ss_pred eccCCcCCCccchhccCCCCCcEEECCCCCCCCCcCCCchh--ccCCcccceeecccccCCCCCchh-hcCCCCCCeeec
Q 038615 131 NLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPRE--IGNLKNLTHLSLITNKRTGAIPST-LGHLTSLLYLDL 207 (274)
Q Consensus 131 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~lp~~--l~~l~~L~~L~l~~n~l~~~~p~~-l~~l~~L~~L~l 207 (274)
++++|.+++..|..++.+++|++|++++|.++ +.+|.. +..+++|++|++++|.+.+..|.. +..+++|++|++
T Consensus 85 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 161 (455)
T 3v47_A 85 KLDYNQFLQLETGAFNGLANLEVLTLTQCNLD---GAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDL 161 (455)
T ss_dssp ECTTCTTCEECTTTTTTCTTCCEEECTTSCCB---THHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEEC
T ss_pred eCCCCccCccChhhccCcccCCEEeCCCCCCC---ccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeC
Confidence 88888888766777888888888888888773 333333 666777777777777777665554 566677777777
Q ss_pred ccCcCCCCCchhc
Q 038615 208 SSNQLHSFIPLEI 220 (274)
Q Consensus 208 s~N~l~~~~p~~l 220 (274)
++|.+++..+..+
T Consensus 162 ~~n~l~~~~~~~l 174 (455)
T 3v47_A 162 TFNKVKSICEEDL 174 (455)
T ss_dssp TTCCBSCCCTTTS
T ss_pred CCCcccccChhhh
Confidence 7776666554433
No 29
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.87 E-value=5.4e-22 Score=160.71 Aligned_cols=168 Identities=26% Similarity=0.278 Sum_probs=103.6
Q ss_pred CCcccceeeeCCCC----------CEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeec
Q 038615 63 DHCNWVGITCDYKG----------SITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNL 132 (274)
Q Consensus 63 ~~c~w~gv~c~~~~----------~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L 132 (274)
-.|.|.++.|+..+ +++.|++++|++.+ ++...+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 5 C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 83 (208)
T 2o6s_A 5 CSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKS-LPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNL 83 (208)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCc-CChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEEC
Confidence 35789999996432 46666666666663 33325566666777777766666444444566666777777
Q ss_pred cCCcCCCccchhccCCCCCcEEECCCCCCCCCcCCCchhccCCcccceeecccccCCCCCchhhcCCCCCCeeecccCcC
Q 038615 133 RWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQL 212 (274)
Q Consensus 133 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l 212 (274)
++|.+++..+..+..+++|++|++++|+++ +..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus 84 s~n~l~~~~~~~~~~l~~L~~L~L~~N~l~---~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 84 STNQLQSLPNGVFDKLTQLKELALNTNQLQ---SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW 160 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCC---CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred CCCcCCccCHhHhcCccCCCEEEcCCCcCc---ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe
Confidence 766666444444566666777777666663 22223356666666777766666655555566666666677666665
Q ss_pred CCCCchhccCCCCCCEEEccCCccCcccc
Q 038615 213 HSFIPLEIGNFSALEELDLSDNKIRALQI 241 (274)
Q Consensus 213 ~~~~p~~l~~l~~L~~L~l~~N~l~~~~~ 241 (274)
.+ .+++|+.|+++.|+++|..+
T Consensus 161 ~~-------~~~~l~~L~~~~n~~~g~ip 182 (208)
T 2o6s_A 161 DC-------TCPGIRYLSEWINKHSGVVR 182 (208)
T ss_dssp CC-------CTTTTHHHHHHHHHCTTTBB
T ss_pred ec-------CCCCHHHHHHHHHhCCceee
Confidence 54 23456666666666666543
No 30
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=1.7e-21 Score=168.74 Aligned_cols=198 Identities=23% Similarity=0.258 Sum_probs=132.3
Q ss_pred CcccceeeeCCC----------CCEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeecc
Q 038615 64 HCNWVGITCDYK----------GSITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLR 133 (274)
Q Consensus 64 ~c~w~gv~c~~~----------~~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~ 133 (274)
.|.|..+.|... .+++.|++++|.+.+..+. .+.++++|++|++++|.+++..|..+..+++|++|+++
T Consensus 32 ~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 32 HCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKD-DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHh-HhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 478888888632 3688999999998854454 78899999999999999987778888888888888888
Q ss_pred CCcCCCccchh----------------------ccCCCCCcEEECCCCCCCCCcCCCchhccCC----------------
Q 038615 134 WNNLTGTIPTE----------------------IGIFRNLEELYLPSNKLNGFNGTIPREIGNL---------------- 175 (274)
Q Consensus 134 ~n~l~~~~p~~----------------------~~~l~~L~~L~L~~n~l~~~~~~lp~~l~~l---------------- 175 (274)
+|.++ .+|.. +..+++|++|++++|.++.. +..|..+..+
T Consensus 111 ~n~l~-~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~l~L~~L~l~~n~l~~l~ 188 (332)
T 2ft3_A 111 KNHLV-EIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS-GFEPGAFDGLKLNYLRISEAKLTGIP 188 (332)
T ss_dssp SSCCC-SCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGG-GSCTTSSCSCCCSCCBCCSSBCSSCC
T ss_pred CCcCC-ccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccC-CCCcccccCCccCEEECcCCCCCccC
Confidence 88776 44433 34445555555555544210 0111112111
Q ss_pred ----cccceeecccccCCCCCchhhcCCCCCCeeecccCcCCCCCchhccCCCCCCEEEccCCccCcccccCcccccccc
Q 038615 176 ----KNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKIRALQIIQPSISQSFI 251 (274)
Q Consensus 176 ----~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~ 251 (274)
++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|+++.++.. ..-...+.
T Consensus 189 ~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~-l~~l~~L~ 267 (332)
T 2ft3_A 189 KDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAG-LPDLKLLQ 267 (332)
T ss_dssp SSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTT-GGGCTTCC
T ss_pred ccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChh-hhcCccCC
Confidence 3455555555555555556667777777888888877776666777778888888888887755332 22334566
Q ss_pred CCccCCccccCCCC
Q 038615 252 KPTFRPNTFCNWKT 265 (274)
Q Consensus 252 ~~~~~~~~~~~~~~ 265 (274)
.+++++|.|.+.+.
T Consensus 268 ~L~l~~N~l~~~~~ 281 (332)
T 2ft3_A 268 VVYLHTNNITKVGV 281 (332)
T ss_dssp EEECCSSCCCBCCT
T ss_pred EEECCCCCCCccCh
Confidence 77777887777654
No 31
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.87 E-value=1.1e-21 Score=178.03 Aligned_cols=162 Identities=26% Similarity=0.237 Sum_probs=135.4
Q ss_pred CCEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEE
Q 038615 76 GSITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELY 155 (274)
Q Consensus 76 ~~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 155 (274)
.+++.|++++|.+.+..+. .|..+++|++|++++|.+++..|..|..+++|++|+|++|.+++..+..+..+++|++|+
T Consensus 32 ~~l~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQD-EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCSSCCCEECTT-TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCCcEEECCCCccceECHh-HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 3688999999999865555 889999999999999999887788899999999999999999855555678899999999
Q ss_pred CCCCCCCCCcCCCchhccCCcccceeecccccCCCCCchhhcCCCCCCeeecccCcCCCCCchhccCCCCCCEEEccCCc
Q 038615 156 LPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNK 235 (274)
Q Consensus 156 L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N~ 235 (274)
+++|.++ +..|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.
T Consensus 111 Ls~n~i~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 187 (477)
T 2id5_A 111 ISENKIV---ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN 187 (477)
T ss_dssp CTTSCCC---EECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCC
T ss_pred CCCCccc---cCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCc
Confidence 9999884 4456678888889999999988888777788888888888888888888666778888888888888888
Q ss_pred cCcccc
Q 038615 236 IRALQI 241 (274)
Q Consensus 236 l~~~~~ 241 (274)
+++...
T Consensus 188 i~~~~~ 193 (477)
T 2id5_A 188 INAIRD 193 (477)
T ss_dssp CCEECT
T ss_pred CcEeCh
Confidence 877654
No 32
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.87 E-value=3.4e-21 Score=166.68 Aligned_cols=200 Identities=21% Similarity=0.236 Sum_probs=123.7
Q ss_pred CCcccceeeeCC----------CCCEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeec
Q 038615 63 DHCNWVGITCDY----------KGSITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNL 132 (274)
Q Consensus 63 ~~c~w~gv~c~~----------~~~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L 132 (274)
..|.|..+.|.. ...++.|++++|++.+..+. .+.++++|++|++++|.+++..|..+..+++|++|++
T Consensus 29 c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 29 CQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDG-DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp CEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTT-TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChh-hhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence 356888888863 23688999999999854444 7899999999999999999877888999999999999
Q ss_pred cCCcCCCccchh----------------------ccCCCCCcEEECCCCCCCCCcCCCchhccCCcccceeeccccc---
Q 038615 133 RWNNLTGTIPTE----------------------IGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHLSLITNK--- 187 (274)
Q Consensus 133 ~~n~l~~~~p~~----------------------~~~l~~L~~L~L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~--- 187 (274)
++|.++ .+|.. +..+++|++|++++|.++. .+..+..+..+++|++|++++|.
T Consensus 108 s~n~l~-~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 108 SKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS-SGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp CSSCCS-BCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG-GGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CCCcCC-ccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc-cCcChhhccCCCCcCEEECCCCcccc
Confidence 888876 44432 4455566666666665531 11223344444444444444443
Q ss_pred ------------------CCCCCchhhcCCCCCCeeecccCcCCCCCchhccCCCCCCEEEccCCccCcccccCcccccc
Q 038615 188 ------------------RTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKIRALQIIQPSISQS 249 (274)
Q Consensus 188 ------------------l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~ 249 (274)
+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|+++.++.. ..-...
T Consensus 186 l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~-l~~l~~ 264 (330)
T 1xku_A 186 IPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG-LADHKY 264 (330)
T ss_dssp CCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTT-TTTCSS
T ss_pred CCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChh-hccCCC
Confidence 3333344455555555666666655554444555555666666666665543321 112234
Q ss_pred ccCCccCCccccCCCCC
Q 038615 250 FIKPTFRPNTFCNWKTL 266 (274)
Q Consensus 250 ~~~~~~~~~~~~~~~~l 266 (274)
+..+++++|.|.+++..
T Consensus 265 L~~L~l~~N~i~~~~~~ 281 (330)
T 1xku_A 265 IQVVYLHNNNISAIGSN 281 (330)
T ss_dssp CCEEECCSSCCCCCCTT
T ss_pred cCEEECCCCcCCccChh
Confidence 45555666666655443
No 33
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=7.9e-22 Score=163.10 Aligned_cols=184 Identities=17% Similarity=0.150 Sum_probs=153.6
Q ss_pred CCEEEEEecCCCcccccCccccCCCCCccEEEccCCC-CCCCCCccCCCCCCCCeeeccC-CcCCCccchhccCCCCCcE
Q 038615 76 GSITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNN-LSGSIPPQIGSLSNLKYLNLRW-NNLTGTIPTEIGIFRNLEE 153 (274)
Q Consensus 76 ~~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~-l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~ 153 (274)
..++.|++++|++.+ ++...+..+++|++|++++|. ++...+..|..+++|++|++++ |.+++..+..+..+++|++
T Consensus 31 ~~l~~L~l~~n~l~~-i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIETHLRT-IPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESCCCSE-ECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CcccEEEEeCCcceE-ECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 479999999999985 444389999999999999997 8766666889999999999998 9999666678899999999
Q ss_pred EECCCCCCCCCcCCCchhccCCcccc---eeecccc-cCCCCCchhhcCCCCCC-eeecccCcCCCCCchhccCCCCCCE
Q 038615 154 LYLPSNKLNGFNGTIPREIGNLKNLT---HLSLITN-KRTGAIPSTLGHLTSLL-YLDLSSNQLHSFIPLEIGNFSALEE 228 (274)
Q Consensus 154 L~L~~n~l~~~~~~lp~~l~~l~~L~---~L~l~~n-~l~~~~p~~l~~l~~L~-~L~ls~N~l~~~~p~~l~~l~~L~~ 228 (274)
|++++|.++. +|. +..+++|+ +|++++| .+.+..+..+..+++|+ .|++++|.++...+..+.. ++|++
T Consensus 110 L~l~~n~l~~----lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~ 183 (239)
T 2xwt_C 110 LGIFNTGLKM----FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDA 183 (239)
T ss_dssp EEEEEECCCS----CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEE
T ss_pred EeCCCCCCcc----ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCE
Confidence 9999999953 555 77788887 9999999 88877777789999999 9999999998533344444 89999
Q ss_pred EEccCCc-cCcccccCcccc-ccccCCccCCccccCCCCC
Q 038615 229 LDLSDNK-IRALQIIQPSIS-QSFIKPTFRPNTFCNWKTL 266 (274)
Q Consensus 229 L~l~~N~-l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l 266 (274)
|++++|+ ++++++..+.-. ..+..+++++|.|.++|..
T Consensus 184 L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~ 223 (239)
T 2xwt_C 184 VYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK 223 (239)
T ss_dssp EECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT
T ss_pred EEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh
Confidence 9999995 998766544444 6788889999999888754
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.87 E-value=1.1e-21 Score=173.56 Aligned_cols=108 Identities=19% Similarity=0.157 Sum_probs=51.2
Q ss_pred EEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEECC
Q 038615 78 ITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLP 157 (274)
Q Consensus 78 l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 157 (274)
++.|++++|.+.+..+. .+..+++|++|++++|.+.+..|..+..+++|++|++++|.++...+..+..+++|++|+++
T Consensus 71 L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~ 149 (390)
T 3o6n_A 71 VELLNLNDLQIEEIDTY-AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS 149 (390)
T ss_dssp CSEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEECCCCcccccChh-hccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECC
Confidence 34444444444322222 44555555555555555554444445555555555555555552222223455555555555
Q ss_pred CCCCCCCcCCCchhccCCcccceeecccccCC
Q 038615 158 SNKLNGFNGTIPREIGNLKNLTHLSLITNKRT 189 (274)
Q Consensus 158 ~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~ 189 (274)
+|.++ +..|..+..+++|++|++++|.++
T Consensus 150 ~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~ 178 (390)
T 3o6n_A 150 NNNLE---RIEDDTFQATTSLQNLQLSSNRLT 178 (390)
T ss_dssp SSCCC---BCCTTTTSSCTTCCEEECCSSCCS
T ss_pred CCccC---ccChhhccCCCCCCEEECCCCcCC
Confidence 55552 222333555555555555555554
No 35
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.87 E-value=1.1e-21 Score=165.60 Aligned_cols=183 Identities=25% Similarity=0.262 Sum_probs=149.3
Q ss_pred CCCEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEE
Q 038615 75 KGSITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEEL 154 (274)
Q Consensus 75 ~~~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 154 (274)
..+++.|++++|.+.+..+. .+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..++.+++|++|
T Consensus 51 l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 129 (276)
T 2z62_A 51 FPELQVLDLSRCEIQTIEDG-AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129 (276)
T ss_dssp CTTCSEEECTTCCCCEECTT-TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEE
T ss_pred ccCCcEEECCCCcCCccCHH-HccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEE
Confidence 45799999999999854444 78999999999999999998777889999999999999999997666678999999999
Q ss_pred ECCCCCCCCCcCCCchhccCCcccceeecccccCCCCCchhhcCCCCCC----eeecccCcCCCCCchhccCCCCCCEEE
Q 038615 155 YLPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLL----YLDLSSNQLHSFIPLEIGNFSALEELD 230 (274)
Q Consensus 155 ~L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~----~L~ls~N~l~~~~p~~l~~l~~L~~L~ 230 (274)
++++|.++. ..+|..+..+++|++|++++|.+++..+..+..+++|+ .|++++|.+++..+..+ ...+|++|+
T Consensus 130 ~l~~n~l~~--~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~-~~~~L~~L~ 206 (276)
T 2z62_A 130 NVAHNLIQS--FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLKELA 206 (276)
T ss_dssp ECCSSCCCC--CCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSS-CSCCEEEEE
T ss_pred ECcCCccce--ecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCcccc-CCCcccEEE
Confidence 999999952 24688899999999999999999987777776666666 78899999887555444 345788999
Q ss_pred ccCCccCcccccCccccccccCCccCCcccc
Q 038615 231 LSDNKIRALQIIQPSISQSFIKPTFRPNTFC 261 (274)
Q Consensus 231 l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (274)
+++|++++.+.....-...+..+++++|.|.
T Consensus 207 L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 207 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred CCCCceeecCHhHhcccccccEEEccCCccc
Confidence 9999988876544444556777788888765
No 36
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=6e-21 Score=160.99 Aligned_cols=179 Identities=29% Similarity=0.317 Sum_probs=153.4
Q ss_pred CCCEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEE
Q 038615 75 KGSITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEEL 154 (274)
Q Consensus 75 ~~~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 154 (274)
..+++.|++.++.+. .++ .+..+++|++|++++|.+++ + ..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 40 l~~L~~L~l~~~~i~-~~~--~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 40 LNSIDQIIANNSDIK-SVQ--GIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HTTCCEEECTTSCCC-CCT--TGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred ccceeeeeeCCCCcc-ccc--ccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 357899999999887 343 47889999999999999985 3 478899999999999999997777778999999999
Q ss_pred ECCCCCCCCCcCCCchhccCCcccceeecccccCCCCCchhhcCCCCCCeeecccCcCCCCCchhccCCCCCCEEEccCC
Q 038615 155 YLPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDN 234 (274)
Q Consensus 155 ~L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N 234 (274)
++++|+++ +..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 115 ~L~~n~l~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 115 VLVENQLQ---SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp ECTTSCCC---CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred ECCCCcCC---ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC
Confidence 99999995 334455789999999999999999887777899999999999999999877777899999999999999
Q ss_pred ccCcccccCccccccccCCccCCcccc
Q 038615 235 KIRALQIIQPSISQSFIKPTFRPNTFC 261 (274)
Q Consensus 235 ~l~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (274)
++++.++....-...+..+++.+|.+.
T Consensus 192 ~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 192 QLKSVPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCCccCHHHHhCCcCCCEEEccCCCcc
Confidence 999987654445567788888888764
No 37
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.86 E-value=9.8e-22 Score=183.25 Aligned_cols=181 Identities=25% Similarity=0.231 Sum_probs=155.2
Q ss_pred CCEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEE
Q 038615 76 GSITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELY 155 (274)
Q Consensus 76 ~~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 155 (274)
.++++|++++|.+.+..+. .|.++++|++|++++|.+++..|..|..+++|++|++++|.+++..|..++.+++|++|+
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSY-SFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTTSCCCEECTT-TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCcCEEECCCCCcCEeChh-hccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 4799999999999965555 899999999999999999987888899999999999999999988899999999999999
Q ss_pred CCCCCCCCCcCCCchhccCCcccceeecccccCCC-CCchhhcCCCCCCeeecccCcCCCCCchhccCCCCCC----EEE
Q 038615 156 LPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTG-AIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALE----ELD 230 (274)
Q Consensus 156 L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~----~L~ 230 (274)
+++|.++. ..+..++.+++|++|++++|.+.+ .+|..++++++|++|++++|.+++..|..++.+++|+ +|+
T Consensus 111 L~~n~l~~---~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~ 187 (606)
T 3vq2_A 111 AVETKLAS---LESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLD 187 (606)
T ss_dssp CTTSCCCC---SSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEE
T ss_pred ccCCcccc---ccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceee
Confidence 99999953 334568999999999999999986 6799999999999999999999998787777666554 899
Q ss_pred ccCCccCcccccCccccccccCCccCCcccc
Q 038615 231 LSDNKIRALQIIQPSISQSFIKPTFRPNTFC 261 (274)
Q Consensus 231 l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (274)
+++|++++.+....... .+..+++++|.+.
T Consensus 188 l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~ 217 (606)
T 3vq2_A 188 MSLNPIDFIQDQAFQGI-KLHELTLRGNFNS 217 (606)
T ss_dssp CTTCCCCEECTTTTTTC-EEEEEEEESCCSC
T ss_pred ccCCCcceeCcccccCc-eeeeeeccCCccc
Confidence 99999998776554443 5677777777653
No 38
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.86 E-value=1.3e-22 Score=190.64 Aligned_cols=168 Identities=15% Similarity=0.224 Sum_probs=131.6
Q ss_pred cCccccCCCCCccEEEccCCCCCCC-----------------CCccCC--CCCCCCeeeccCCcCCCccchhccCCCCCc
Q 038615 92 LGSLNFSCFPNLQYLNLWNNNLSGS-----------------IPPQIG--SLSNLKYLNLRWNNLTGTIPTEIGIFRNLE 152 (274)
Q Consensus 92 l~~~~l~~l~~L~~L~l~~n~l~~~-----------------~p~~l~--~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 152 (274)
+|. .++++++|++|++++|.+++. +|..+. .+++|++|++++|.+.+.+|..++.+++|+
T Consensus 198 ip~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 198 VSK-AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276 (636)
T ss_dssp ECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred CCH-HHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence 666 788899999999999999875 888888 899999999999999989999999999999
Q ss_pred EEECCCCC-CCCCcC-CCchhccCC------cccceeecccccCCCCCch--hhcCCCCCCeeecccCcCCCCCchhccC
Q 038615 153 ELYLPSNK-LNGFNG-TIPREIGNL------KNLTHLSLITNKRTGAIPS--TLGHLTSLLYLDLSSNQLHSFIPLEIGN 222 (274)
Q Consensus 153 ~L~L~~n~-l~~~~~-~lp~~l~~l------~~L~~L~l~~n~l~~~~p~--~l~~l~~L~~L~ls~N~l~~~~p~~l~~ 222 (274)
+|++++|+ + .| .+|..+..+ ++|++|++++|.++ .+|. .++.+++|++|++++|.++|.+| .+..
T Consensus 277 ~L~Ls~n~~l---~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~ 351 (636)
T 4eco_A 277 LINVACNRGI---SGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGS 351 (636)
T ss_dssp EEECTTCTTS---CHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEE
T ss_pred EEECcCCCCC---ccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCC
Confidence 99999998 7 55 677777665 88888888888888 7777 78888888888888888887777 7777
Q ss_pred CCCCCEEEccCCccCcccccCccccccccCCccCCccccCCCC
Q 038615 223 FSALEELDLSDNKIRALQIIQPSISQSFIKPTFRPNTFCNWKT 265 (274)
Q Consensus 223 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (274)
+++|++|++++|+++.++.........+..+++++|.+..+|.
T Consensus 352 l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~ 394 (636)
T 4eco_A 352 EIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPN 394 (636)
T ss_dssp EEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCS
T ss_pred CCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccch
Confidence 7777777777777774433222222225666666666665554
No 39
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.86 E-value=2.2e-21 Score=174.76 Aligned_cols=116 Identities=23% Similarity=0.225 Sum_probs=59.8
Q ss_pred hhccCCCCCcEEECCCCCCCCCcCCCchhccCCcccceeecccccCCCCCchhhcCCCCCCeeecccCcCCCCCchhccC
Q 038615 143 TEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGN 222 (274)
Q Consensus 143 ~~~~~l~~L~~L~L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~ 222 (274)
..++.+++|++|++++|.+ .+..|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..|..+..
T Consensus 293 ~~~~~l~~L~~L~Ls~n~l---~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 369 (455)
T 3v47_A 293 SVFSHFTDLEQLTLAQNEI---NKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLG 369 (455)
T ss_dssp TTTTTCTTCCEEECTTSCC---CEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred hhcccCCCCCEEECCCCcc---cccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccc
Confidence 3344444455555555544 2223344555555555555555555554555555555555555555555555555555
Q ss_pred CCCCCEEEccCCccCcccccCccccccccCCccCCcccc
Q 038615 223 FSALEELDLSDNKIRALQIIQPSISQSFIKPTFRPNTFC 261 (274)
Q Consensus 223 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (274)
+++|++|++++|++++.++....-...+..+++++|.|.
T Consensus 370 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 370 LPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cccccEEECCCCccccCCHhHhccCCcccEEEccCCCcc
Confidence 555666666666555544332233334455555555543
No 40
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.86 E-value=3.8e-21 Score=173.47 Aligned_cols=180 Identities=21% Similarity=0.212 Sum_probs=145.3
Q ss_pred CCEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccch------------
Q 038615 76 GSITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPT------------ 143 (274)
Q Consensus 76 ~~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~------------ 143 (274)
.+++.|++++|.+.+..+. .|.++++|++|++++|.+++..+..+..+++|++|++++|.++...+.
T Consensus 99 ~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 177 (452)
T 3zyi_A 99 HHLEVLQLGRNSIRQIEVG-AFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLD 177 (452)
T ss_dssp TTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCccCCcChh-hccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEe
Confidence 4788889998888855445 788888888888888888866666677888888888888877743332
Q ss_pred -------------hccCCCCCcEEECCCCCCCCCcCCCchhccCCcccceeecccccCCCCCchhhcCCCCCCeeecccC
Q 038615 144 -------------EIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSN 210 (274)
Q Consensus 144 -------------~~~~l~~L~~L~L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N 210 (274)
.+..+++|++|++++|+++. +| .+..+++|++|++++|.+.+..|..+..+++|+.|++++|
T Consensus 178 l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~----~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n 252 (452)
T 3zyi_A 178 LGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD----MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS 252 (452)
T ss_dssp CCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS----CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTS
T ss_pred CCCCCCccccChhhccCCCCCCEEECCCCcccc----cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCC
Confidence 34556677777777777742 33 4788899999999999999999999999999999999999
Q ss_pred cCCCCCchhccCCCCCCEEEccCCccCcccccCccccccccCCccCCcccc
Q 038615 211 QLHSFIPLEIGNFSALEELDLSDNKIRALQIIQPSISQSFIKPTFRPNTFC 261 (274)
Q Consensus 211 ~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (274)
.+++..+..+..+++|+.|++++|++++.+.........+..+++++|.+.
T Consensus 253 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 253 QVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred cCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 999988999999999999999999999887655555566778888888753
No 41
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=9.8e-22 Score=168.84 Aligned_cols=187 Identities=17% Similarity=0.089 Sum_probs=149.6
Q ss_pred CEEEEEecCCCcccccCcccc--CCCCCccEEEccCCCCCCCCC----ccCCCCCCCCeeeccCCcCCCccchhccCCCC
Q 038615 77 SITHIELVECSIKGELGSLNF--SCFPNLQYLNLWNNNLSGSIP----PQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRN 150 (274)
Q Consensus 77 ~l~~L~l~~~~l~~~l~~~~l--~~l~~L~~L~l~~n~l~~~~p----~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 150 (274)
++++|++++|.+.+..+. .+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+++..+..++.+++
T Consensus 92 ~L~~L~l~~n~l~~~~~~-~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 92 RLKELTLEDLKITGTMPP-LPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp CCCEEEEESCCCBSCCCC-CSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred ceeEEEeeCCEeccchhh-hhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 599999999999988877 66 889999999999999987555 34457889999999999999877888999999
Q ss_pred CcEEECCCCCCCCCcCCCc--hhccCCcccceeecccccCCCCCch----hhcCCCCCCeeecccCcCCCCCchhccCC-
Q 038615 151 LEELYLPSNKLNGFNGTIP--REIGNLKNLTHLSLITNKRTGAIPS----TLGHLTSLLYLDLSSNQLHSFIPLEIGNF- 223 (274)
Q Consensus 151 L~~L~L~~n~l~~~~~~lp--~~l~~l~~L~~L~l~~n~l~~~~p~----~l~~l~~L~~L~ls~N~l~~~~p~~l~~l- 223 (274)
|++|++++|++.+.. .++ ..+..+++|++|++++|.++. ++. .++.+++|++|++++|.+++..|..+..+
T Consensus 171 L~~L~Ls~N~l~~~~-~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 248 (310)
T 4glp_A 171 LTSLDLSDNPGLGER-GLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM 248 (310)
T ss_dssp CCEEECCSCTTCHHH-HHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred CCEEECCCCCCccch-hhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence 999999999874211 122 223678899999999999863 233 24678999999999999998878777776
Q ss_pred --CCCCEEEccCCccCcccccCccccccccCCccCCccccCCCCCccc
Q 038615 224 --SALEELDLSDNKIRALQIIQPSISQSFIKPTFRPNTFCNWKTLQPC 269 (274)
Q Consensus 224 --~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~c 269 (274)
++|++|++++|+++.++. .+...+..+++++|+|.++|....+
T Consensus 249 ~~~~L~~L~Ls~N~l~~lp~---~~~~~L~~L~Ls~N~l~~~~~~~~l 293 (310)
T 4glp_A 249 WSSALNSLNLSFAGLEQVPK---GLPAKLRVLDLSSNRLNRAPQPDEL 293 (310)
T ss_dssp CCTTCCCEECCSSCCCSCCS---CCCSCCSCEECCSCCCCSCCCTTSC
T ss_pred CcCcCCEEECCCCCCCchhh---hhcCCCCEEECCCCcCCCCchhhhC
Confidence 699999999999996543 3346888889999999988765444
No 42
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.86 E-value=1.2e-21 Score=182.55 Aligned_cols=182 Identities=22% Similarity=0.235 Sum_probs=145.5
Q ss_pred CCEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCC-ccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEE
Q 038615 76 GSITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIP-PQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEEL 154 (274)
Q Consensus 76 ~~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 154 (274)
.+++.|++++|.+. .++. .+..+++|++|++++|.+.+..| ..+..+++|++|++++|.+++..|..+..+++|++|
T Consensus 376 ~~L~~L~L~~n~l~-~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 453 (606)
T 3vq2_A 376 NSLRHLDLSFNGAI-IMSA-NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTL 453 (606)
T ss_dssp SCCCEEECCSCSEE-EECC-CCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEE
T ss_pred CcccEeECCCCccc-cchh-hccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEE
Confidence 35666666666665 3454 67788888888888888877666 577888888888888888887788888888899999
Q ss_pred ECCCCCCCCCcC-CCchhccCCcccceeecccccCCCCCchhhcCCCCCCeeecccCcCCCCCchhccCCCCCCEEEccC
Q 038615 155 YLPSNKLNGFNG-TIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSD 233 (274)
Q Consensus 155 ~L~~n~l~~~~~-~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~ 233 (274)
++++|.+ .+ .+|..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..|..+..+++|++|++++
T Consensus 454 ~l~~n~l---~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~ 530 (606)
T 3vq2_A 454 KMAGNSF---KDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSF 530 (606)
T ss_dssp ECTTCEE---GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTT
T ss_pred ECCCCcC---CCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCC
Confidence 9999888 33 3577788899999999999999888888888999999999999999988888899999999999999
Q ss_pred CccCcccccCccccccccCCccCCccccC
Q 038615 234 NKIRALQIIQPSISQSFIKPTFRPNTFCN 262 (274)
Q Consensus 234 N~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (274)
|+++.++.....+...+..+++++|.+..
T Consensus 531 N~l~~~p~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 531 NRIETSKGILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp SCCCCEESCGGGSCTTCCEEECCSCCCCC
T ss_pred CcCcccCHhHhhhcccCcEEEccCCCccc
Confidence 99987665433344457777888887643
No 43
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.86 E-value=5.1e-22 Score=170.82 Aligned_cols=180 Identities=19% Similarity=0.176 Sum_probs=149.5
Q ss_pred CCCEEEEEecCCCcccccCccccCCC-----CCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCc--cchhc--
Q 038615 75 KGSITHIELVECSIKGELGSLNFSCF-----PNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGT--IPTEI-- 145 (274)
Q Consensus 75 ~~~l~~L~l~~~~l~~~l~~~~l~~l-----~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~--~p~~~-- 145 (274)
..+++.|++++|.+.+. +. .+..+ ++|++|++++|.+.+..|..+..+++|++|++++|.+.+. ++..+
T Consensus 120 l~~L~~L~Ls~N~l~~~-~~-~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 197 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATR-DA-WLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP 197 (312)
T ss_dssp SCCCSEEEEESCBCSSS-SS-HHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred CCCccEEEccCCCCcch-hH-HHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence 45899999999999965 65 66666 8999999999999988888999999999999999998865 34444
Q ss_pred cCCCCCcEEECCCCCCCCCcCCCc-hhccCCcccceeecccccCCCCCc-hhhcCCCCCCeeecccCcCCCCCchhccCC
Q 038615 146 GIFRNLEELYLPSNKLNGFNGTIP-REIGNLKNLTHLSLITNKRTGAIP-STLGHLTSLLYLDLSSNQLHSFIPLEIGNF 223 (274)
Q Consensus 146 ~~l~~L~~L~L~~n~l~~~~~~lp-~~l~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l 223 (274)
..+++|++|++++|.++.+. .++ ..+..+++|++|++++|.+.+..| ..+..+++|++|++++|.++ .+|..+.
T Consensus 198 ~~l~~L~~L~L~~N~l~~~~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~-- 273 (312)
T 1wwl_A 198 LKFPTLQVLALRNAGMETPS-GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP-- 273 (312)
T ss_dssp TSCTTCCEEECTTSCCCCHH-HHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--
T ss_pred ccCCCCCEEECCCCcCcchH-HHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--
Confidence 88999999999999996322 222 334678999999999999998764 45667899999999999999 5777766
Q ss_pred CCCCEEEccCCccCcccccCccccccccCCccCCccccC
Q 038615 224 SALEELDLSDNKIRALQIIQPSISQSFIKPTFRPNTFCN 262 (274)
Q Consensus 224 ~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (274)
++|++|++++|+|++.+. ......+..+++++|.|.+
T Consensus 274 ~~L~~L~Ls~N~l~~~p~--~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 274 AKLSVLDLSYNRLDRNPS--PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SEEEEEECCSSCCCSCCC--TTTSCEEEEEECTTCTTTC
T ss_pred CCceEEECCCCCCCCChh--HhhCCCCCEEeccCCCCCC
Confidence 899999999999999843 3445677888999999876
No 44
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.85 E-value=6.2e-21 Score=171.54 Aligned_cols=179 Identities=23% Similarity=0.238 Sum_probs=139.4
Q ss_pred CCEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccch------------
Q 038615 76 GSITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPT------------ 143 (274)
Q Consensus 76 ~~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~------------ 143 (274)
.+++.|++++|.+.+..+. .|.++++|++|++++|.+++..+..|..+++|++|++++|.++...+.
T Consensus 88 ~~L~~L~Ls~n~i~~i~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~ 166 (440)
T 3zyj_A 88 RHLEILQLSRNHIRTIEIG-AFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLD 166 (440)
T ss_dssp SSCCEEECCSSCCCEECGG-GGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCcCCccChh-hccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeC
Confidence 4677888888877743333 677777777777777777755555677777777777777766633222
Q ss_pred -------------hccCCCCCcEEECCCCCCCCCcCCCchhccCCcccceeecccccCCCCCchhhcCCCCCCeeecccC
Q 038615 144 -------------EIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSN 210 (274)
Q Consensus 144 -------------~~~~l~~L~~L~L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N 210 (274)
.+..+++|++|++++|.++ .+| .+..+++|++|++++|.+++..|..+..+++|+.|++++|
T Consensus 167 l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~----~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n 241 (440)
T 3zyj_A 167 LGELKRLSYISEGAFEGLSNLRYLNLAMCNLR----EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS 241 (440)
T ss_dssp CCCCTTCCEECTTTTTTCSSCCEEECTTSCCS----SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CCCCCCcceeCcchhhcccccCeecCCCCcCc----ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCC
Confidence 3555667777777777774 334 3788899999999999999988999999999999999999
Q ss_pred cCCCCCchhccCCCCCCEEEccCCccCcccccCccccccccCCccCCccc
Q 038615 211 QLHSFIPLEIGNFSALEELDLSDNKIRALQIIQPSISQSFIKPTFRPNTF 260 (274)
Q Consensus 211 ~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~ 260 (274)
.+++..+..|..+++|++|+|++|++++.+.........+..+++.+|.+
T Consensus 242 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 242 QIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred ceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 99998889999999999999999999988765555556677788888875
No 45
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.85 E-value=1.6e-20 Score=153.50 Aligned_cols=150 Identities=21% Similarity=0.292 Sum_probs=129.8
Q ss_pred EEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEECCCCC
Q 038615 81 IELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNK 160 (274)
Q Consensus 81 L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 160 (274)
++.+++++. .+|. .+. ++++.|++++|.+++..+..|..+++|++|+|++|.+++..|..+..+++|++|++++|.
T Consensus 16 v~c~~~~l~-~iP~-~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 16 VDCRGKGLT-EIPT-NLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp EECTTSCCS-SCCS-SCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred EEcCCCCcC-cCCC-ccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 444556666 5665 333 689999999999997777789999999999999999998888999999999999999999
Q ss_pred CCCCcCCCch-hccCCcccceeecccccCCCCCchhhcCCCCCCeeecccCcCCCCCchhccCCCCCCEEEccCCccCc
Q 038615 161 LNGFNGTIPR-EIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKIRA 238 (274)
Q Consensus 161 l~~~~~~lp~-~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 238 (274)
++. +|. .+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++..
T Consensus 92 l~~----l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 92 ITE----LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCC----CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCc----cCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 963 343 46889999999999999999888999999999999999999999878889999999999999999865
No 46
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.85 E-value=9e-21 Score=155.08 Aligned_cols=155 Identities=20% Similarity=0.217 Sum_probs=134.1
Q ss_pred EEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCC-ccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEECCC
Q 038615 80 HIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIP-PQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPS 158 (274)
Q Consensus 80 ~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 158 (274)
.++++++.++ .+|. .+ .+.+++|++++|.+++..+ ..|..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 15 ~l~~s~n~l~-~iP~-~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 15 TVDCSNQKLN-KIPE-HI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp EEECCSSCCS-SCCS-CC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EeEeCCCCcc-cCcc-CC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 5777788887 5666 44 3457899999999997644 4578999999999999999977777899999999999999
Q ss_pred CCCCCCcCCCchhccCCcccceeecccccCCCCCchhhcCCCCCCeeecccCcCCCCCchhccCCCCCCEEEccCCccCc
Q 038615 159 NKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKIRA 238 (274)
Q Consensus 159 n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 238 (274)
|.++ +..+..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..|..+..+++|++|++++|+++.
T Consensus 91 N~l~---~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 91 NRLE---NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp SCCC---CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CccC---ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 9994 3445668899999999999999999889999999999999999999999889999999999999999999986
Q ss_pred ccc
Q 038615 239 LQI 241 (274)
Q Consensus 239 ~~~ 241 (274)
.-.
T Consensus 168 ~c~ 170 (220)
T 2v70_A 168 NCY 170 (220)
T ss_dssp SGG
T ss_pred CCc
Confidence 543
No 47
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.85 E-value=5.3e-21 Score=178.29 Aligned_cols=183 Identities=20% Similarity=0.141 Sum_probs=103.9
Q ss_pred CEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCcc-CCCCCCCCeeeccCCcCCCccchhccCCCCCcEEE
Q 038615 77 SITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQ-IGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELY 155 (274)
Q Consensus 77 ~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 155 (274)
+++.|++++|.+.+..+. .+..+++|++|++++|.+.+..+.. +..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 377 ~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 455 (606)
T 3t6q_A 377 HLQSLNLSYNEPLSLKTE-AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLN 455 (606)
T ss_dssp TCCEEECCSCSCEEECTT-TTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEE
T ss_pred CCCEEECCCCcCCcCCHH-HhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEE
Confidence 455555555555533333 4555555555555555555443322 55556666666666666555555556666666666
Q ss_pred CCCCCCCCCcCCCchhccCCcccceeecccccCCCCCchhhcCCCCCCeeecccCcCCCCCchhccCCCCCCEEEccCCc
Q 038615 156 LPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNK 235 (274)
Q Consensus 156 L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N~ 235 (274)
+++|.+++..-..+..+..+++|++|++++|.+++..|..+..+++|++|++++|++++..|..+..+++| +|++++|+
T Consensus 456 L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~ 534 (606)
T 3t6q_A 456 LQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNH 534 (606)
T ss_dssp CTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSC
T ss_pred CCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCc
Confidence 66666531111122345566666666666666666656666666666666666666666666666666666 66666666
Q ss_pred cCcccccCccccccccCCccCCcccc
Q 038615 236 IRALQIIQPSISQSFIKPTFRPNTFC 261 (274)
Q Consensus 236 l~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (274)
+++.++........+..+++++|.+.
T Consensus 535 l~~~~~~~~~~l~~L~~L~l~~N~~~ 560 (606)
T 3t6q_A 535 ISIILPSLLPILSQQRTINLRQNPLD 560 (606)
T ss_dssp CCCCCGGGHHHHHTSSEEECTTCCEE
T ss_pred ccccCHhhcccCCCCCEEeCCCCCcc
Confidence 66554433333344555666666553
No 48
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.85 E-value=1.7e-20 Score=174.99 Aligned_cols=133 Identities=23% Similarity=0.265 Sum_probs=92.3
Q ss_pred CEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEEC
Q 038615 77 SITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYL 156 (274)
Q Consensus 77 ~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 156 (274)
+++.++++++.+. .+|...+..+++|++|++++|.+++..|..|..+++|++|+|++|.+++..|..++.+++|++|++
T Consensus 52 ~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 52 NQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 4566777777766 455435667777777777777777666667777777777777777777666666777777777777
Q ss_pred CCCCCCCCcCCCchh-ccCCcccceeecccccCCCCCchhhcCCCCCCeeecccCcCCC
Q 038615 157 PSNKLNGFNGTIPRE-IGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHS 214 (274)
Q Consensus 157 ~~n~l~~~~~~lp~~-l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 214 (274)
++|.++ .+|.. +..+++|++|++++|.+.+..|..+..+++|++|++++|.+++
T Consensus 131 ~~n~l~----~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 131 ERNDLS----SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 185 (597)
T ss_dssp CSSCCC----CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred eCCCCC----CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence 777774 23333 4677777777777777777666666666666666666666554
No 49
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.85 E-value=7.2e-21 Score=184.06 Aligned_cols=193 Identities=23% Similarity=0.232 Sum_probs=160.9
Q ss_pred CcccceeeeCCCCCEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCC-CccCCCCCCCCeeeccCCcCCCccc
Q 038615 64 HCNWVGITCDYKGSITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSI-PPQIGSLSNLKYLNLRWNNLTGTIP 142 (274)
Q Consensus 64 ~c~w~gv~c~~~~~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~p 142 (274)
.|+|..|.+ ...+++.|++++|.+.+..+. .|.++++|++|++++|...+.+ |..|..+++|++|+|++|.+++..|
T Consensus 13 ~~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~-~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p 90 (844)
T 3j0a_A 13 FCNLTQVPQ-VLNTTERLLLSFNYIRTVTAS-SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP 90 (844)
T ss_dssp CCCSSCCCS-SCTTCCEEEEESCCCCEECSS-SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT
T ss_pred CCCCCCCCC-CCCCcCEEECCCCcCCccChh-HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH
Confidence 356777877 667999999999999966666 8999999999999999766555 7789999999999999999998889
Q ss_pred hhccCCCCCcEEECCCCCCCCCcCCCchh--ccCCcccceeecccccCCCCCc-hhhcCCCCCCeeecccCcCCCCCchh
Q 038615 143 TEIGIFRNLEELYLPSNKLNGFNGTIPRE--IGNLKNLTHLSLITNKRTGAIP-STLGHLTSLLYLDLSSNQLHSFIPLE 219 (274)
Q Consensus 143 ~~~~~l~~L~~L~L~~n~l~~~~~~lp~~--l~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~ls~N~l~~~~p~~ 219 (274)
..++.+++|++|++++|.+ .+.+|.. +.++++|++|++++|.+.+..+ ..++++++|++|++++|.+++..+..
T Consensus 91 ~~~~~l~~L~~L~Ls~n~l---~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~ 167 (844)
T 3j0a_A 91 DAFQGLFHLFELRLYFCGL---SDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE 167 (844)
T ss_dssp TSSCSCSSCCCEECTTCCC---SSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGG
T ss_pred hHccCCcccCEeeCcCCCC---CcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHH
Confidence 9999999999999999999 4445554 8899999999999999987654 57899999999999999999988888
Q ss_pred ccCC--CCCCEEEccCCccCcccccCcccc------ccccCCccCCcccc
Q 038615 220 IGNF--SALEELDLSDNKIRALQIIQPSIS------QSFIKPTFRPNTFC 261 (274)
Q Consensus 220 l~~l--~~L~~L~l~~N~l~~~~~~~~~~~------~~~~~~~~~~~~~~ 261 (274)
+..+ ++|+.|++++|.+++..+...... ..+..+++++|.+.
T Consensus 168 l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~ 217 (844)
T 3j0a_A 168 LEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWT 217 (844)
T ss_dssp GHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSS
T ss_pred cccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCc
Confidence 8877 899999999999988654321111 12566677777554
No 50
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.85 E-value=2.5e-20 Score=164.89 Aligned_cols=85 Identities=25% Similarity=0.198 Sum_probs=45.1
Q ss_pred CEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEEC
Q 038615 77 SITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYL 156 (274)
Q Consensus 77 ~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 156 (274)
+++.|++++|.+.+..+. .+..+++|++|++++|.++...+..+..+++|++|++++|.+++..|..+..+++|++|++
T Consensus 94 ~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 172 (390)
T 3o6n_A 94 TIQKLYMGFNAIRYLPPH-VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL 172 (390)
T ss_dssp TCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEEC
T ss_pred CcCEEECCCCCCCcCCHH-HhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEEC
Confidence 455555555555533333 4555555555555555555322222455555555555555555444445555555555555
Q ss_pred CCCCCC
Q 038615 157 PSNKLN 162 (274)
Q Consensus 157 ~~n~l~ 162 (274)
++|.++
T Consensus 173 ~~n~l~ 178 (390)
T 3o6n_A 173 SSNRLT 178 (390)
T ss_dssp CSSCCS
T ss_pred CCCcCC
Confidence 555553
No 51
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.84 E-value=1.3e-20 Score=170.93 Aligned_cols=158 Identities=23% Similarity=0.213 Sum_probs=126.7
Q ss_pred CCCEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEE
Q 038615 75 KGSITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEEL 154 (274)
Q Consensus 75 ~~~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 154 (274)
..+++.|++++|.+.+..+. .|.++++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|
T Consensus 55 l~~L~~L~L~~n~i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 133 (477)
T 2id5_A 55 FPHLEELELNENIVSAVEPG-AFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSL 133 (477)
T ss_dssp CTTCCEEECTTSCCCEECTT-TTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCccCEeChh-hhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEE
Confidence 35789999999999865566 88999999999999999986555667889999999999999987778888899999999
Q ss_pred ECCCCCCCCCcCCCchhccCCcccceeecccccCCCCCchhhcCCCCCCeeecccCcCCCCCchhccCCCCCCEEEccCC
Q 038615 155 YLPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDN 234 (274)
Q Consensus 155 ~L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N 234 (274)
++++|.++ +..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|
T Consensus 134 ~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~ 210 (477)
T 2id5_A 134 EVGDNDLV---YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW 210 (477)
T ss_dssp EECCTTCC---EECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECC
T ss_pred ECCCCccc---eeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCC
Confidence 99999884 334566788888889999888888776677888888888888888887766666666666666666554
Q ss_pred cc
Q 038615 235 KI 236 (274)
Q Consensus 235 ~l 236 (274)
.+
T Consensus 211 ~~ 212 (477)
T 2id5_A 211 PY 212 (477)
T ss_dssp TT
T ss_pred cc
Confidence 43
No 52
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.84 E-value=1.2e-20 Score=175.98 Aligned_cols=185 Identities=24% Similarity=0.237 Sum_probs=104.2
Q ss_pred CEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCC--CccCCCCCCCCeeeccCCcCCCccchh----------
Q 038615 77 SITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSI--PPQIGSLSNLKYLNLRWNNLTGTIPTE---------- 144 (274)
Q Consensus 77 ~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~--p~~l~~l~~L~~L~L~~n~l~~~~p~~---------- 144 (274)
+++.|++++|.+.+.++...+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+++..|..
T Consensus 326 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 405 (606)
T 3t6q_A 326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELL 405 (606)
T ss_dssp TCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEE
T ss_pred cCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeE
Confidence 45556666655554444433555555555555555554332 334444444555555444444333444
Q ss_pred ---------------ccCCCCCcEEECCCCCCCCCcCCCchhccCCcccceeecccccCCC---CCchhhcCCCCCCeee
Q 038615 145 ---------------IGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTG---AIPSTLGHLTSLLYLD 206 (274)
Q Consensus 145 ---------------~~~l~~L~~L~L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~---~~p~~l~~l~~L~~L~ 206 (274)
+..+++|++|++++|.+ .+..|..+..+++|++|++++|.+.+ ..+..+..+++|++|+
T Consensus 406 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l---~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~ 482 (606)
T 3t6q_A 406 DLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLL---DISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILV 482 (606)
T ss_dssp ECTTCCEECCTTCCTTTTCTTCCEEECTTCCC---BTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEE
T ss_pred ECCCCcCCCcccchhhhCcccCCEEECCCCcc---CCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEE
Confidence 44455555555555554 23344455666666666666666654 1224466666777777
Q ss_pred cccCcCCCCCchhccCCCCCCEEEccCCccCcccccCccccccccCCccCCccccCCCC
Q 038615 207 LSSNQLHSFIPLEIGNFSALEELDLSDNKIRALQIIQPSISQSFIKPTFRPNTFCNWKT 265 (274)
Q Consensus 207 ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (274)
+++|.+++..|..+..+++|++|++++|++++..+....-...+ .+++++|.+.+.++
T Consensus 483 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~ 540 (606)
T 3t6q_A 483 LSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILP 540 (606)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCG
T ss_pred CCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCH
Confidence 77777776666677777777777777777776655443334444 56677777666543
No 53
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.84 E-value=5.2e-21 Score=184.34 Aligned_cols=191 Identities=20% Similarity=0.248 Sum_probs=157.9
Q ss_pred cccceeeeC--CCCCEEEEEecCCCccc-----------------ccCccccC--CCCCccEEEccCCCCCCCCCccCCC
Q 038615 65 CNWVGITCD--YKGSITHIELVECSIKG-----------------ELGSLNFS--CFPNLQYLNLWNNNLSGSIPPQIGS 123 (274)
Q Consensus 65 c~w~gv~c~--~~~~l~~L~l~~~~l~~-----------------~l~~~~l~--~l~~L~~L~l~~n~l~~~~p~~l~~ 123 (274)
+...|+.-. ...+++.|++++|.+.| .+|. .++ ++++|++|++++|.+.+.+|..+..
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~-~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~ 513 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE-ELSWSNLKDLTDVELYNCPNMTQLPDFLYD 513 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTS-CCCGGGCTTCCEEEEESCTTCCSCCGGGGG
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCCh-hhhhccCCCCCEEECcCCCCCccChHHHhC
Confidence 445554422 34689999999999998 3888 777 9999999999999999999999999
Q ss_pred CCCCCeeeccCCc-CCC-ccchhccCCC-------CCcEEECCCCCCCCCcCCCch--hccCCcccceeecccccCCCCC
Q 038615 124 LSNLKYLNLRWNN-LTG-TIPTEIGIFR-------NLEELYLPSNKLNGFNGTIPR--EIGNLKNLTHLSLITNKRTGAI 192 (274)
Q Consensus 124 l~~L~~L~L~~n~-l~~-~~p~~~~~l~-------~L~~L~L~~n~l~~~~~~lp~--~l~~l~~L~~L~l~~n~l~~~~ 192 (274)
+++|++|++++|. +++ .+|..++.++ +|++|++++|.++ .+|. .+.++++|+.|++++|.+. .+
T Consensus 514 L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~----~ip~~~~l~~L~~L~~L~Ls~N~l~-~l 588 (876)
T 4ecn_A 514 LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE----EFPASASLQKMVKLGLLDCVHNKVR-HL 588 (876)
T ss_dssp CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC----BCCCHHHHTTCTTCCEEECTTSCCC-BC
T ss_pred CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC----ccCChhhhhcCCCCCEEECCCCCcc-cc
Confidence 9999999999998 998 7888766554 9999999999994 6788 8999999999999999998 77
Q ss_pred chhhcCCCCCCeeecccCcCCCCCchhccCCCC-CCEEEccCCccCcccccCcccc-ccccCCccCCccccCC
Q 038615 193 PSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSA-LEELDLSDNKIRALQIIQPSIS-QSFIKPTFRPNTFCNW 263 (274)
Q Consensus 193 p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~-L~~L~l~~N~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 263 (274)
| .++.+++|+.|++++|.++ .+|..+..+++ |+.|++++|+++.++....... ..+..+++++|.|.+.
T Consensus 589 p-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ 659 (876)
T 4ecn_A 589 E-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSE 659 (876)
T ss_dssp C-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTT
T ss_pred h-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCc
Confidence 7 8899999999999999998 68888889998 9999999999986543221111 2366777888877654
No 54
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=6e-20 Score=157.67 Aligned_cols=171 Identities=23% Similarity=0.369 Sum_probs=114.1
Q ss_pred CCEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEE
Q 038615 76 GSITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELY 155 (274)
Q Consensus 76 ~~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 155 (274)
.+++.|++++|.+.+ ++. +..+++|++|++++|.+++ ++ .+..+++|++|++++|.+++ ++. +..+++|++|+
T Consensus 63 ~~L~~L~L~~n~i~~-~~~--~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~ 135 (308)
T 1h6u_A 63 NNLIGLELKDNQITD-LAP--LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLY 135 (308)
T ss_dssp TTCCEEECCSSCCCC-CGG--GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEE
T ss_pred CCCCEEEccCCcCCC-Chh--HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEE
Confidence 467777777777763 332 6677777777777777764 33 56777777777777777774 333 67777777777
Q ss_pred CCCCCCCCCcCCCchhccCCcccceeecccccCCCCCchhhcCCCCCCeeecccCcCCCCCchhccCCCCCCEEEccCCc
Q 038615 156 LPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNK 235 (274)
Q Consensus 156 L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N~ 235 (274)
+++|.++. ++. +..+++|++|++++|.+++. +. +..+++|+.|++++|.+++..+ +..+++|++|++++|+
T Consensus 136 l~~n~l~~----~~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~ 206 (308)
T 1h6u_A 136 LDLNQITN----ISP-LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQ 206 (308)
T ss_dssp CCSSCCCC----CGG-GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSC
T ss_pred CCCCccCc----Ccc-ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCc
Confidence 77777742 222 66777777777777777653 32 6777777777777777776433 6677777777777777
Q ss_pred cCcccccCccccccccCCccCCccccCCC
Q 038615 236 IRALQIIQPSISQSFIKPTFRPNTFCNWK 264 (274)
Q Consensus 236 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (274)
+++.++ ......+..+++++|.+.+.+
T Consensus 207 l~~~~~--l~~l~~L~~L~l~~N~i~~~~ 233 (308)
T 1h6u_A 207 ISDVSP--LANTSNLFIVTLTNQTITNQP 233 (308)
T ss_dssp CCBCGG--GTTCTTCCEEEEEEEEEECCC
T ss_pred cCcccc--ccCCCCCCEEEccCCeeecCC
Confidence 777653 233445666667777776644
No 55
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.84 E-value=6.1e-20 Score=158.98 Aligned_cols=181 Identities=21% Similarity=0.205 Sum_probs=131.8
Q ss_pred CCEEEEEecCCCcccccCccccCCCCCccEEEccCCCCC---------------------CCCCccCCCCCCCCeeeccC
Q 038615 76 GSITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLS---------------------GSIPPQIGSLSNLKYLNLRW 134 (274)
Q Consensus 76 ~~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~---------------------~~~p~~l~~l~~L~~L~L~~ 134 (274)
.+++.|++++|.+.+..+. .+..+++|++|++++|.++ +..+..+..+++|++|++++
T Consensus 78 ~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~ 156 (332)
T 2ft3_A 78 QHLYALVLVNNKISKIHEK-AFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGG 156 (332)
T ss_dssp TTCCEEECCSSCCCEECGG-GSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCS
T ss_pred CCCcEEECCCCccCccCHh-HhhCcCCCCEEECCCCcCCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCC
Confidence 4677777777777644444 5666666666666666554 22333467788999999999
Q ss_pred CcCCC--ccchhccCC--------------------CCCcEEECCCCCCCCCcCCCchhccCCcccceeecccccCCCCC
Q 038615 135 NNLTG--TIPTEIGIF--------------------RNLEELYLPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAI 192 (274)
Q Consensus 135 n~l~~--~~p~~~~~l--------------------~~L~~L~L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~ 192 (274)
|.++. ..|..+..+ ++|++|++++|.++ +..+..+..+++|++|++++|.+.+..
T Consensus 157 n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~---~~~~~~l~~l~~L~~L~L~~N~l~~~~ 233 (332)
T 2ft3_A 157 NPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQ---AIELEDLLRYSKLYRLGLGHNQIRMIE 233 (332)
T ss_dssp CCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCC---CCCTTSSTTCTTCSCCBCCSSCCCCCC
T ss_pred CccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCC---ccCHHHhcCCCCCCEEECCCCcCCcCC
Confidence 98852 445555544 24555555555552 233456888999999999999999988
Q ss_pred chhhcCCCCCCeeecccCcCCCCCchhccCCCCCCEEEccCCccCcccccCccc------cccccCCccCCcccc
Q 038615 193 PSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKIRALQIIQPSI------SQSFIKPTFRPNTFC 261 (274)
Q Consensus 193 p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~------~~~~~~~~~~~~~~~ 261 (274)
+..+..+++|++|++++|.++ .+|..+..+++|++|++++|++++.+.....- ...+..+++.+|.+.
T Consensus 234 ~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~ 307 (332)
T 2ft3_A 234 NGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307 (332)
T ss_dssp TTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred hhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence 888999999999999999999 47888999999999999999999886543221 234566778888776
No 56
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=2.2e-21 Score=166.68 Aligned_cols=182 Identities=19% Similarity=0.159 Sum_probs=147.8
Q ss_pred CCCEEEEEecCCCcccccCc---cccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCc--cc--hhccC
Q 038615 75 KGSITHIELVECSIKGELGS---LNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGT--IP--TEIGI 147 (274)
Q Consensus 75 ~~~l~~L~l~~~~l~~~l~~---~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~--~p--~~~~~ 147 (274)
..+++.|++++|.+.+..+. ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. ++ ..++.
T Consensus 116 ~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 195 (310)
T 4glp_A 116 GLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHK 195 (310)
T ss_dssp CBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTS
T ss_pred CCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhc
Confidence 45789999999999865441 2456799999999999999988888999999999999999998753 22 23468
Q ss_pred CCCCcEEECCCCCCCCCcCCCch-hccCCcccceeecccccCCCCCchhhcCC---CCCCeeecccCcCCCCCchhccCC
Q 038615 148 FRNLEELYLPSNKLNGFNGTIPR-EIGNLKNLTHLSLITNKRTGAIPSTLGHL---TSLLYLDLSSNQLHSFIPLEIGNF 223 (274)
Q Consensus 148 l~~L~~L~L~~n~l~~~~~~lp~-~l~~l~~L~~L~l~~n~l~~~~p~~l~~l---~~L~~L~ls~N~l~~~~p~~l~~l 223 (274)
+++|++|++++|+++.+.+ .+. .+..+++|++|++++|.+.+..|..+..+ ++|++|++++|+++. +|..+.
T Consensus 196 l~~L~~L~Ls~N~l~~l~~-~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~-lp~~~~-- 271 (310)
T 4glp_A 196 FPAIQNLALRNTGMETPTG-VCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ-VPKGLP-- 271 (310)
T ss_dssp SCCCCSCBCCSSCCCCHHH-HHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS-CCSCCC--
T ss_pred CCCCCEEECCCCCCCchHH-HHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCc-hhhhhc--
Confidence 8999999999999963321 122 25788999999999999998888777776 699999999999994 677664
Q ss_pred CCCCEEEccCCccCcccccCccccccccCCccCCccccC
Q 038615 224 SALEELDLSDNKIRALQIIQPSISQSFIKPTFRPNTFCN 262 (274)
Q Consensus 224 ~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (274)
++|++|++++|++++.+. +.....+..+++++|.|..
T Consensus 272 ~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 272 AKLRVLDLSSNRLNRAPQ--PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp SCCSCEECCSCCCCSCCC--TTSCCCCSCEECSSTTTSC
T ss_pred CCCCEEECCCCcCCCCch--hhhCCCccEEECcCCCCCC
Confidence 799999999999998743 2344677888999999875
No 57
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.84 E-value=2.7e-20 Score=170.53 Aligned_cols=159 Identities=24% Similarity=0.271 Sum_probs=119.7
Q ss_pred CCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCC--ccchhccCCCCCcEEECCCCCCCCCcCCCchh-ccC
Q 038615 98 SCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTG--TIPTEIGIFRNLEELYLPSNKLNGFNGTIPRE-IGN 174 (274)
Q Consensus 98 ~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~~~lp~~-l~~ 174 (274)
..+++|++|++++|.+++.+|..+..+++|++|++++|.+++ .+|..++.+++|++|++++|.+ .+.+|.. +..
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l---~~~l~~~~~~~ 397 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSV---SYDEKKGDCSW 397 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCC---BCCGGGCSCCC
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcC---Ccccccchhcc
Confidence 577888888888888887778888888888888888888885 4566788888888888888888 3335543 667
Q ss_pred CcccceeecccccCCCCCchhhcCCCCCCeeecccCcCCCCCchhccCCCCCCEEEccCCccCcccccCccccccccCCc
Q 038615 175 LKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKIRALQIIQPSISQSFIKPT 254 (274)
Q Consensus 175 l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~ 254 (274)
+++|++|++++|.+++..|..+. ++|++|++++|+++ .+|..+..+++|++|++++|++++++.....-...+..++
T Consensus 398 l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 474 (520)
T 2z7x_B 398 TKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIW 474 (520)
T ss_dssp CTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEE
Confidence 78888888888888776665543 67888888888888 4677677888888888888888876544233344566677
Q ss_pred cCCccccC
Q 038615 255 FRPNTFCN 262 (274)
Q Consensus 255 ~~~~~~~~ 262 (274)
+++|.|..
T Consensus 475 l~~N~~~c 482 (520)
T 2z7x_B 475 LHTNPWDC 482 (520)
T ss_dssp CCSSCBCC
T ss_pred CcCCCCcc
Confidence 77777643
No 58
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.83 E-value=6.2e-20 Score=158.75 Aligned_cols=160 Identities=23% Similarity=0.310 Sum_probs=113.2
Q ss_pred cCCCCCccEEEccCCCCCC--CCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEECCCCCCCCCcCCCchhccC
Q 038615 97 FSCFPNLQYLNLWNNNLSG--SIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGN 174 (274)
Q Consensus 97 l~~l~~L~~L~l~~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~lp~~l~~ 174 (274)
+..+++|++|++++|.+.. ..+..+..+++|++|++++|.++ .+|..+. ++|++|++++|.++ +..|..+..
T Consensus 141 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~---~~~~~~~~~ 214 (330)
T 1xku_A 141 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKIT---KVDAASLKG 214 (330)
T ss_dssp HTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCC---EECTGGGTT
T ss_pred hcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCC---ccCHHHhcC
Confidence 4445555555555555532 33444555555555555555555 3343322 56666666666663 334667889
Q ss_pred CcccceeecccccCCCCCchhhcCCCCCCeeecccCcCCCCCchhccCCCCCCEEEccCCccCcccccCccc------cc
Q 038615 175 LKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKIRALQIIQPSI------SQ 248 (274)
Q Consensus 175 l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~------~~ 248 (274)
+++|++|++++|.+.+..+..+..+++|++|++++|.++. +|..+..+++|++|++++|++++.+...+.. ..
T Consensus 215 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~ 293 (330)
T 1xku_A 215 LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKA 293 (330)
T ss_dssp CTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS-CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSC
T ss_pred CCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCcc-CChhhccCCCcCEEECCCCcCCccChhhcCCcccccccc
Confidence 9999999999999998888889999999999999999984 7888999999999999999999886544321 23
Q ss_pred cccCCccCCccccCC
Q 038615 249 SFIKPTFRPNTFCNW 263 (274)
Q Consensus 249 ~~~~~~~~~~~~~~~ 263 (274)
.+..+++.+|.+..+
T Consensus 294 ~l~~l~l~~N~~~~~ 308 (330)
T 1xku_A 294 SYSGVSLFSNPVQYW 308 (330)
T ss_dssp CCSEEECCSSSSCGG
T ss_pred cccceEeecCccccc
Confidence 455677888887654
No 59
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.83 E-value=3e-20 Score=175.51 Aligned_cols=163 Identities=28% Similarity=0.306 Sum_probs=142.3
Q ss_pred CCEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEE
Q 038615 76 GSITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELY 155 (274)
Q Consensus 76 ~~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 155 (274)
.++++|++++|++.+..+. .|.++++|++|++++|.+++..|..+..+++|++|++++|.+++..+..++.+++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAA-NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCCCCCGG-GGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCCCCCCCcCHH-HHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 5799999999999854444 799999999999999999988888899999999999999999955455799999999999
Q ss_pred CCCCCCCCCcCCCchhccCCcccceeecccccCCCCCchhhcCCCCCCeeecccCcCCCCCchhcc--CCCCCCEEEccC
Q 038615 156 LPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIG--NFSALEELDLSD 233 (274)
Q Consensus 156 L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~--~l~~L~~L~l~~ 233 (274)
+++|.++ +..|..+..+++|++|++++|.+.+..+..++++++|++|++++|.+++..+..+. .+++|++|++++
T Consensus 104 L~~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~ 180 (680)
T 1ziw_A 104 LMSNSIQ---KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180 (680)
T ss_dssp CCSSCCC---CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTT
T ss_pred CCCCccC---ccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCC
Confidence 9999984 33346789999999999999999998888899999999999999999987776654 568999999999
Q ss_pred CccCccccc
Q 038615 234 NKIRALQII 242 (274)
Q Consensus 234 N~l~~~~~~ 242 (274)
|++++..+.
T Consensus 181 n~l~~~~~~ 189 (680)
T 1ziw_A 181 NQIKEFSPG 189 (680)
T ss_dssp CCCCCBCTT
T ss_pred CcccccChh
Confidence 999887653
No 60
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.83 E-value=7.8e-20 Score=169.21 Aligned_cols=158 Identities=23% Similarity=0.271 Sum_probs=111.1
Q ss_pred CCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCC--ccchhccCCCCCcEEECCCCCCCCCcCCCchh-ccC
Q 038615 98 SCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTG--TIPTEIGIFRNLEELYLPSNKLNGFNGTIPRE-IGN 174 (274)
Q Consensus 98 ~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~~~lp~~-l~~ 174 (274)
..+++|++|++++|.+++..|..+..+++|++|++++|.+++ .+|..+..+++|++|++++|.++ +.+|.. +..
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~---~~~~~~~~~~ 426 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN---SHAYDRTCAW 426 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCB---SCCSSCCCCC
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCC---CccChhhhcC
Confidence 567778888888888887777777888888888888888875 23456777888888888888873 334443 666
Q ss_pred CcccceeecccccCCCCCchhhcCCCCCCeeecccCcCCCCCchhccCCCCCCEEEccCCccCcccccCccccccccCCc
Q 038615 175 LKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKIRALQIIQPSISQSFIKPT 254 (274)
Q Consensus 175 l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~ 254 (274)
+++|++|++++|.+++..|..+. ++|++|++++|+++. +|..+..+++|++|++++|++++++.........+..++
T Consensus 427 l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~-ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 503 (562)
T 3a79_B 427 AESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIW 503 (562)
T ss_dssp CTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCC-CCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEE
T ss_pred cccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcc-cChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEE
Confidence 77788888888877765554433 578888888888774 666666778888888888888766543223334556666
Q ss_pred cCCcccc
Q 038615 255 FRPNTFC 261 (274)
Q Consensus 255 ~~~~~~~ 261 (274)
+++|.+.
T Consensus 504 l~~N~~~ 510 (562)
T 3a79_B 504 LHDNPWD 510 (562)
T ss_dssp CCSCCBC
T ss_pred ecCCCcC
Confidence 7777654
No 61
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.83 E-value=8.7e-20 Score=172.32 Aligned_cols=184 Identities=23% Similarity=0.231 Sum_probs=101.9
Q ss_pred CEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCC--------------------------CCCccCCCCCCCCee
Q 038615 77 SITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSG--------------------------SIPPQIGSLSNLKYL 130 (274)
Q Consensus 77 ~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~--------------------------~~p~~l~~l~~L~~L 130 (274)
+++.|++++|.+.+.++...+..+++|++|++++|.+.+ .+|..+..+++|++|
T Consensus 406 ~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L 485 (680)
T 1ziw_A 406 HLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL 485 (680)
T ss_dssp TCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEE
T ss_pred CCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEE
Confidence 455566666665554443345555555555555554332 234445555566666
Q ss_pred eccCCcCCCccchhccCCCCCcEEECCCCCCCCCcC-CCc----hhccCCcccceeecccccCCCCCchhhcCCCCCCee
Q 038615 131 NLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNG-TIP----REIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYL 205 (274)
Q Consensus 131 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~-~lp----~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 205 (274)
++++|.+++..+..+..+++|++|++++|+++.+.. .+| ..+..+++|++|++++|.+....+..+..+++|+.|
T Consensus 486 ~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L 565 (680)
T 1ziw_A 486 DLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKII 565 (680)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCccee
Confidence 666666654444455566666666666666542211 111 124556666666666666664333456666677777
Q ss_pred ecccCcCCCCCchhccCCCCCCEEEccCCccCcccccCcc-ccccccCCccCCccc
Q 038615 206 DLSSNQLHSFIPLEIGNFSALEELDLSDNKIRALQIIQPS-ISQSFIKPTFRPNTF 260 (274)
Q Consensus 206 ~ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~-~~~~~~~~~~~~~~~ 260 (274)
++++|.+++..+..+..+++|+.|++++|++++.++.... ....+..+++++|.+
T Consensus 566 ~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~ 621 (680)
T 1ziw_A 566 DLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPF 621 (680)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCC
T ss_pred ECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCc
Confidence 7777777665555566666777777777776666543222 223455556666653
No 62
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.83 E-value=5.2e-20 Score=171.68 Aligned_cols=161 Identities=29% Similarity=0.342 Sum_probs=132.5
Q ss_pred CEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEEC
Q 038615 77 SITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYL 156 (274)
Q Consensus 77 ~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 156 (274)
.+++|+|++|.++ .+++..|.++++|++|++++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++|++
T Consensus 53 ~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 53 STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred CCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 6899999999998 455448999999999999999998767778899999999999999998665667899999999999
Q ss_pred CCCCCCCCcCCCchhccCCcccceeecccccCCC-CCchhhcCCCCCCeeecccCcCCCCCchhccCCCCC----CEEEc
Q 038615 157 PSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTG-AIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSAL----EELDL 231 (274)
Q Consensus 157 ~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L----~~L~l 231 (274)
++|+++.+ .+..++++++|++|++++|.+.+ ..|..++.+++|++|++++|++++..+..+..++++ ..+++
T Consensus 132 s~N~l~~l---~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~l 208 (635)
T 4g8a_A 132 VETNLASL---ENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 208 (635)
T ss_dssp TTSCCCCS---TTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEEC
T ss_pred CCCcCCCC---ChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhc
Confidence 99998532 23458889999999999999876 467888889999999999999998777776654443 46888
Q ss_pred cCCccCcccc
Q 038615 232 SDNKIRALQI 241 (274)
Q Consensus 232 ~~N~l~~~~~ 241 (274)
+.|.++...+
T Consensus 209 s~n~l~~i~~ 218 (635)
T 4g8a_A 209 SLNPMNFIQP 218 (635)
T ss_dssp TTCCCCEECT
T ss_pred ccCcccccCc
Confidence 8888876654
No 63
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.83 E-value=6.7e-20 Score=147.22 Aligned_cols=153 Identities=22% Similarity=0.256 Sum_probs=128.3
Q ss_pred CCEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEE
Q 038615 76 GSITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELY 155 (274)
Q Consensus 76 ~~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 155 (274)
.+++.|+++++.+. .++ .+..+++|++|++++|.++ .+..+..+++|++|++++|.+++..+..++.+++|++|+
T Consensus 44 ~~L~~L~l~~n~i~-~l~--~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLT--GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HTCCEEEEESSCCS-CCT--TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred CCccEEeccCCCcc-ChH--HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 47889999999988 555 4788999999999999775 345788999999999999999987888899999999999
Q ss_pred CCCCCCCCCcCCCchhccCCcccceeecccccCCCCCchhhcCCCCCCeeecccCcCCCCCchhccCCCCCCEEEccCCc
Q 038615 156 LPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNK 235 (274)
Q Consensus 156 L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N~ 235 (274)
+++|.+ .+..|..+..+++|++|++++|...+.++ .+..+++|++|++++|.+++ ++ .+..+++|++|++++|+
T Consensus 119 Ls~n~i---~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 119 ISHSAH---DDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CCSSBC---BGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC-
T ss_pred ecCCcc---CcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcc
Confidence 999999 44567888999999999999998444555 68899999999999999987 34 78889999999999999
Q ss_pred cCcc
Q 038615 236 IRAL 239 (274)
Q Consensus 236 l~~~ 239 (274)
+.+.
T Consensus 193 i~~~ 196 (197)
T 4ezg_A 193 IGGK 196 (197)
T ss_dssp ----
T ss_pred cCCc
Confidence 8753
No 64
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=4.2e-19 Score=143.62 Aligned_cols=156 Identities=24% Similarity=0.193 Sum_probs=132.9
Q ss_pred EEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEECCC
Q 038615 79 THIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPS 158 (274)
Q Consensus 79 ~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 158 (274)
+.++..++++. .+|. . -.++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 10 ~~v~c~~~~l~-~~p~-~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRT-SVPT-G--IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCS-SCCS-C--CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCcc-CCCC-C--CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence 46788888877 5555 3 356899999999999976666789999999999999999966666688999999999999
Q ss_pred CCCCCCcCCCchhccCCcccceeecccccCCCCCchhhcCCCCCCeeecccCcCCCCCchhccCCCCCCEEEccCCccCc
Q 038615 159 NKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKIRA 238 (274)
Q Consensus 159 n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~ 238 (274)
|.++. ..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++.+
T Consensus 86 n~l~~---~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 162 (208)
T 2o6s_A 86 NQLQS---LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 162 (208)
T ss_dssp SCCCC---CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC
T ss_pred CcCCc---cCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec
Confidence 99953 233447899999999999999998777778999999999999999998777778999999999999999987
Q ss_pred ccc
Q 038615 239 LQI 241 (274)
Q Consensus 239 ~~~ 241 (274)
..+
T Consensus 163 ~~~ 165 (208)
T 2o6s_A 163 TCP 165 (208)
T ss_dssp CTT
T ss_pred CCC
Confidence 643
No 65
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.82 E-value=1.3e-19 Score=154.37 Aligned_cols=147 Identities=31% Similarity=0.429 Sum_probs=71.5
Q ss_pred CEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEEC
Q 038615 77 SITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYL 156 (274)
Q Consensus 77 ~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 156 (274)
+++.|+++++.+. .++ .+..+++|++|++++|.+++. +. +..+++|++|++++|.+++ +| .+..+++|++|++
T Consensus 47 ~L~~L~l~~~~i~-~~~--~~~~l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L 119 (291)
T 1h6t_A 47 SIDQIIANNSDIK-SVQ--GIQYLPNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSL 119 (291)
T ss_dssp TCCEEECTTSCCC-CCT--TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEEC
T ss_pred cccEEEccCCCcc-cCh--hHhcCCCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEEC
Confidence 3455555555544 222 244455555555555555432 22 4555555555555555542 22 2455555555555
Q ss_pred CCCCCCCCcCCCchhccCCcccceeecccccCCCCCchhhcCCCCCCeeecccCcCCCCCchhccCCCCCCEEEccCCcc
Q 038615 157 PSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKI 236 (274)
Q Consensus 157 ~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l 236 (274)
++|.++.+ +.+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+ +..+++|+.|++++|++
T Consensus 120 ~~n~i~~~-----~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i 190 (291)
T 1h6t_A 120 EHNGISDI-----NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 190 (291)
T ss_dssp TTSCCCCC-----GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred CCCcCCCC-----hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcC
Confidence 55555321 2344455555555555555433 344455555555555555554322 44555555555555555
Q ss_pred Ccc
Q 038615 237 RAL 239 (274)
Q Consensus 237 ~~~ 239 (274)
++.
T Consensus 191 ~~l 193 (291)
T 1h6t_A 191 SDL 193 (291)
T ss_dssp CBC
T ss_pred CCC
Confidence 544
No 66
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.82 E-value=5.1e-20 Score=161.52 Aligned_cols=157 Identities=23% Similarity=0.232 Sum_probs=88.1
Q ss_pred CEEEEEecCCCcccccCccccC-CCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEE
Q 038615 77 SITHIELVECSIKGELGSLNFS-CFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELY 155 (274)
Q Consensus 77 ~l~~L~l~~~~l~~~l~~~~l~-~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 155 (274)
.++.|++++|.+.+..+. .+. .+++|++|++++|.+++..+..|..+++|++|+|++|.+++..+..+..+++|++|+
T Consensus 40 ~l~~L~Ls~N~l~~l~~~-~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAE-WTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp TCSEEECCSSCCCEECTT-SSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCEEECCCCCCCccChh-hhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence 355666666666533222 444 566666666666666654445566666666666666666644444556666666666
Q ss_pred CCCCCCCCCcCCCchhccCCcccceeecccccCCCCCchhh---cCCCCCCeeecccCcCCCCCchhccCCCC--CCEEE
Q 038615 156 LPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTL---GHLTSLLYLDLSSNQLHSFIPLEIGNFSA--LEELD 230 (274)
Q Consensus 156 L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l---~~l~~L~~L~ls~N~l~~~~p~~l~~l~~--L~~L~ 230 (274)
+++|.++ +..|..+..+++|++|++++|.+++..+..+ ..+++|+.|++++|.+++..+..+..++. ++.|+
T Consensus 119 L~~N~i~---~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~ 195 (361)
T 2xot_A 119 LYNNHIV---VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195 (361)
T ss_dssp CCSSCCC---EECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEE
T ss_pred CCCCccc---EECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEE
Confidence 6666663 2224455566666666666666664333333 34566666666666666544455555554 25566
Q ss_pred ccCCccC
Q 038615 231 LSDNKIR 237 (274)
Q Consensus 231 l~~N~l~ 237 (274)
+++|++.
T Consensus 196 l~~N~~~ 202 (361)
T 2xot_A 196 LHNNPLE 202 (361)
T ss_dssp CCSSCEE
T ss_pred ecCCCcc
Confidence 6666554
No 67
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.82 E-value=1e-19 Score=159.50 Aligned_cols=175 Identities=24% Similarity=0.175 Sum_probs=140.4
Q ss_pred EEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCC-CCCCCCeeeccCCcCCCccchhccCCCCCcEEECCC
Q 038615 80 HIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIG-SLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPS 158 (274)
Q Consensus 80 ~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 158 (274)
.++++++++. .+|. .+ .+.++.|++++|.+++..+..+. .+++|++|+|++|.+++..+..+..+++|++|++++
T Consensus 22 ~l~c~~~~l~-~iP~-~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 22 ILSCSKQQLP-NVPQ-SL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp EEECCSSCCS-SCCS-SC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EEEeCCCCcC-ccCc-cC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 5677778887 5666 33 34689999999999977777777 899999999999999977777899999999999999
Q ss_pred CCCCCCcCCCchhccCCcccceeecccccCCCCCchhhcCCCCCCeeecccCcCCCCCchhc---cCCCCCCEEEccCCc
Q 038615 159 NKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEI---GNFSALEELDLSDNK 235 (274)
Q Consensus 159 n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l---~~l~~L~~L~l~~N~ 235 (274)
|+++. ..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+ ..+++|+.|+|++|+
T Consensus 98 N~l~~---~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 98 NHLHT---LDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp SCCCE---ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred CcCCc---CCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 99953 234568899999999999999998888899999999999999999998555555 578999999999999
Q ss_pred cCcccccCcccccc--ccCCccCCcccc
Q 038615 236 IRALQIIQPSISQS--FIKPTFRPNTFC 261 (274)
Q Consensus 236 l~~~~~~~~~~~~~--~~~~~~~~~~~~ 261 (274)
|++++......... +..+++.+|.+.
T Consensus 175 l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 175 LKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CCccCHHHhhhccHhhcceEEecCCCcc
Confidence 99876422211111 345677777653
No 68
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.82 E-value=1.1e-19 Score=148.52 Aligned_cols=151 Identities=21% Similarity=0.227 Sum_probs=132.1
Q ss_pred CcccceeeeCCC----------CCEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeecc
Q 038615 64 HCNWVGITCDYK----------GSITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLR 133 (274)
Q Consensus 64 ~c~w~gv~c~~~----------~~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~ 133 (274)
.|.|..+.|... ..++.|++++|.+.+..+...+..+++|++|++++|.+++..+..|..+++|++|+|+
T Consensus 10 ~C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 10 RCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred EECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 467888888532 2578999999999966554368899999999999999998777789999999999999
Q ss_pred CCcCCCccchhccCCCCCcEEECCCCCCCCCcCCCchhccCCcccceeecccccCCCCCchhhcCCCCCCeeecccCcCC
Q 038615 134 WNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLH 213 (274)
Q Consensus 134 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~ 213 (274)
+|.+++..+..+..+++|++|++++|+++ +..|..+..+++|++|++++|.+++..|..+..+++|+.|++++|.++
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~---~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRIT---CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCC---CBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCC---eECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 99999877788999999999999999994 445677899999999999999999988999999999999999999998
Q ss_pred CCCc
Q 038615 214 SFIP 217 (274)
Q Consensus 214 ~~~p 217 (274)
+..+
T Consensus 167 c~c~ 170 (220)
T 2v70_A 167 CNCY 170 (220)
T ss_dssp CSGG
T ss_pred CCCc
Confidence 6544
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.82 E-value=1.8e-20 Score=170.66 Aligned_cols=179 Identities=21% Similarity=0.215 Sum_probs=93.3
Q ss_pred CEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccch-------------
Q 038615 77 SITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPT------------- 143 (274)
Q Consensus 77 ~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~------------- 143 (274)
+++.|++++|.+.+..+. .+..+++|++|++++|.+++..| +..+++|++|++++|.+++..+.
T Consensus 35 ~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l 111 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAA-DLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNI 111 (487)
T ss_dssp GCCEEECCSSCCCCCCGG-GGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCC
T ss_pred CccEEEeeCCcCCCCCHH-HHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcC
Confidence 455666666666543333 55566666666666666554332 55555555555555554421100
Q ss_pred ---hccCCCCCcEEECCCCCCCCCcCCCchhccCCcccceeecccccCCCCCchhhc-CCCCCCeeecccCcCCCCCchh
Q 038615 144 ---EIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLG-HLTSLLYLDLSSNQLHSFIPLE 219 (274)
Q Consensus 144 ---~~~~l~~L~~L~L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~-~l~~L~~L~ls~N~l~~~~p~~ 219 (274)
....+++|++|++++|.+ .+..|..+..+++|+.|++++|.+++..|..+. .+++|+.|++++|.+++. | .
T Consensus 112 ~~~~~~~l~~L~~L~L~~N~l---~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-~ 186 (487)
T 3oja_A 112 SRVSCSRGQGKKNIYLANNKI---TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-G 186 (487)
T ss_dssp CCEEECCCSSCEEEECCSSCC---CSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-C
T ss_pred CCCCccccCCCCEEECCCCCC---CCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c-c
Confidence 001234555555555555 223344455566666666666666665555554 456666666666666553 2 1
Q ss_pred ccCCCCCCEEEccCCccCcccccCccccccccCCccCCccccCCC
Q 038615 220 IGNFSALEELDLSDNKIRALQIIQPSISQSFIKPTFRPNTFCNWK 264 (274)
Q Consensus 220 l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (274)
...+++|++|++++|.+++.++. ..-...+..+++++|.|.++|
T Consensus 187 ~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp 230 (487)
T 3oja_A 187 QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIE 230 (487)
T ss_dssp CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEEC
T ss_pred cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccc
Confidence 22455666666666666655433 222334555556666555544
No 70
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.82 E-value=2.2e-19 Score=154.17 Aligned_cols=175 Identities=25% Similarity=0.392 Sum_probs=97.7
Q ss_pred CEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEEC
Q 038615 77 SITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYL 156 (274)
Q Consensus 77 ~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 156 (274)
+++.|+++++++. .++ .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+++ ++ .+..+++|++|++
T Consensus 42 ~L~~L~l~~~~i~-~l~--~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 42 GITTLSAFGTGVT-TIE--GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDL 114 (308)
T ss_dssp TCCEEECTTSCCC-CCT--TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEEC
T ss_pred CcCEEEeeCCCcc-Cch--hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEEC
Confidence 5556666666555 232 35556666666666666653 232 5666666666666666653 22 4556666666666
Q ss_pred CCCCCCCCcCCCchhccCCcccceeecccccCCCCCchhhcCCCCCCeeecccCcCCCCCchhccCCCCCCEEEccCCcc
Q 038615 157 PSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKI 236 (274)
Q Consensus 157 ~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l 236 (274)
++|.++. ++. +..+++|++|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|++
T Consensus 115 ~~n~l~~----~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 115 TSTQITD----VTP-LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI 185 (308)
T ss_dssp TTSCCCC----CGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred CCCCCCC----chh-hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCcc
Confidence 6666632 222 5566666666666666654322 5556666666666666655322 55666666666666666
Q ss_pred CcccccCccccccccCCccCCccccCCCCCccc
Q 038615 237 RALQIIQPSISQSFIKPTFRPNTFCNWKTLQPC 269 (274)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~c 269 (274)
++.++ ......+..+++++|.+.+++.+..|
T Consensus 186 ~~~~~--l~~l~~L~~L~L~~N~l~~~~~l~~l 216 (308)
T 1h6u_A 186 SDISP--LASLPNLIEVHLKNNQISDVSPLANT 216 (308)
T ss_dssp CCCGG--GGGCTTCCEEECTTSCCCBCGGGTTC
T ss_pred CcChh--hcCCCCCCEEEccCCccCccccccCC
Confidence 65543 22334455556666666655544443
No 71
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=6.4e-20 Score=169.41 Aligned_cols=176 Identities=24% Similarity=0.296 Sum_probs=139.9
Q ss_pred CCCCCCCc-----cccee-eeCCCCCEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeee
Q 038615 58 PHNTSDHC-----NWVGI-TCDYKGSITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLN 131 (274)
Q Consensus 58 w~~~~~~c-----~w~gv-~c~~~~~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 131 (274)
|..+.++| .|.|+ .|. .++++.|++++|++.+ +|. .+ +++|++|++++|.++ .+| ..+++|++|+
T Consensus 36 W~~~~~~~~~~~~~~~~l~~C~-~~~L~~L~Ls~n~L~~-lp~-~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~ 106 (571)
T 3cvr_A 36 WEKQALPGENRNEAVSLLKECL-INQFSELQLNRLNLSS-LPD-NL--PPQITVLEITQNALI-SLP---ELPASLEYLD 106 (571)
T ss_dssp HHTTCCTTCCHHHHHHHHHHHH-HTTCSEEECCSSCCSC-CCS-CC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEE
T ss_pred HhccCCccccccchhhhccccc-cCCccEEEeCCCCCCc-cCH-hH--cCCCCEEECcCCCCc-ccc---cccCCCCEEE
Confidence 44456677 79999 675 3589999999999985 776 44 388999999999998 577 4578999999
Q ss_pred ccCCcCCCccchhccCCCCCcEEECCCCCCCCCcCCCchhccCCcccceeecccccCCCCCchhhcCCCCCCeeecccCc
Q 038615 132 LRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQ 211 (274)
Q Consensus 132 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~ 211 (274)
+++|.+++ +|. +.. +|++|++++|.++. +|. .+++|+.|++++|.+++ +|. .+++|++|++++|.
T Consensus 107 Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~----lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~ 171 (571)
T 3cvr_A 107 ACDNRLST-LPE-LPA--SLKHLDVDNNQLTM----LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQ 171 (571)
T ss_dssp CCSSCCSC-CCC-CCT--TCCEEECCSSCCSC----CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSC
T ss_pred ccCCCCCC-cch-hhc--CCCEEECCCCcCCC----CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCC
Confidence 99999996 777 554 99999999999953 555 67889999999999986 555 56889999999999
Q ss_pred CCCCCchhccCCCCCCEEEccCCccCcccccCccccccc-------cCCccCCccccCCCC
Q 038615 212 LHSFIPLEIGNFSALEELDLSDNKIRALQIIQPSISQSF-------IKPTFRPNTFCNWKT 265 (274)
Q Consensus 212 l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~ 265 (274)
+++ +|. +. ++|+.|++++|+|+.++. +...+ ..+++++|.|..+|.
T Consensus 172 L~~-lp~-l~--~~L~~L~Ls~N~L~~lp~----~~~~L~~~~~~L~~L~Ls~N~l~~lp~ 224 (571)
T 3cvr_A 172 LTF-LPE-LP--ESLEALDVSTNLLESLPA----VPVRNHHSEETEIFFRCRENRITHIPE 224 (571)
T ss_dssp CSC-CCC-CC--TTCCEEECCSSCCSSCCC----CC--------CCEEEECCSSCCCCCCG
T ss_pred CCC-cch-hh--CCCCEEECcCCCCCchhh----HHHhhhcccccceEEecCCCcceecCH
Confidence 988 666 65 889999999999987655 22355 777888888887765
No 72
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.82 E-value=1.2e-19 Score=167.94 Aligned_cols=66 Identities=14% Similarity=0.166 Sum_probs=48.3
Q ss_pred cCCCCCCeeecccCcCCCCCchhccCCCCCCEEEccCCccCcccccC--ccccccccCCccCCccccC
Q 038615 197 GHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKIRALQIIQ--PSISQSFIKPTFRPNTFCN 262 (274)
Q Consensus 197 ~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~--~~~~~~~~~~~~~~~~~~~ 262 (274)
..+++|++|++++|.+++.+|..+..+++|++|++++|++++.+..+ ..-...+..+++++|.+.+
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~ 417 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNS 417 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBS
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCC
Confidence 45667888888888888777778888888888888888888765332 2334566777788888776
No 73
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=2.5e-19 Score=146.45 Aligned_cols=152 Identities=22% Similarity=0.287 Sum_probs=132.2
Q ss_pred cEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEECCCCCCCCCcCCCchhccCCcccceeec
Q 038615 104 QYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHLSL 183 (274)
Q Consensus 104 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~lp~~l~~l~~L~~L~l 183 (274)
+.++++++.++ .+|..+. +++++|++++|.+++..+..+..+++|++|++++|.++ +..|..+..+++|++|++
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~---~~~~~~~~~l~~L~~L~L 87 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS---ELAPDAFQGLRSLNSLVL 87 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCC---EECTTTTTTCSSCCEEEC
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCC---CcCHHHhhCCcCCCEEEC
Confidence 56888999887 5776554 68999999999999766678999999999999999994 445778999999999999
Q ss_pred ccccCCCCCchhhcCCCCCCeeecccCcCCCCCchhccCCCCCCEEEccCCccCcccccCccccccccCCccCCcccc
Q 038615 184 ITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKIRALQIIQPSISQSFIKPTFRPNTFC 261 (274)
Q Consensus 184 ~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (274)
++|.++...+..+..+++|++|++++|.+++..|..|..+++|++|++++|++++.++........+..+++.+|.|.
T Consensus 88 s~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 88 YGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 999999776667889999999999999999988999999999999999999999987655555567788889999874
No 74
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.81 E-value=2e-20 Score=172.87 Aligned_cols=180 Identities=21% Similarity=0.235 Sum_probs=101.1
Q ss_pred CEEEEEecCCCccccc--CccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccc-hhccCCCCCcE
Q 038615 77 SITHIELVECSIKGEL--GSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIP-TEIGIFRNLEE 153 (274)
Q Consensus 77 ~l~~L~l~~~~l~~~l--~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~ 153 (274)
+++.|++++|.+.+.. +. .+..+++|++|++++|.+.+. +..+..+++|++|++++|.+++..| ..+..+++|++
T Consensus 348 ~L~~L~l~~n~l~~~~~~~~-~~~~~~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 425 (570)
T 2z63_A 348 SLEFLDLSRNGLSFKGCCSQ-SDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425 (570)
T ss_dssp TCCEEECCSSCCBEEEEEEH-HHHTCSCCCEEECCSCSEEEE-EEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCE
T ss_pred CCCEEeCcCCccCccccccc-cccccCccCEEECCCCccccc-cccccccCCCCEEEccCCccccccchhhhhcCCCCCE
Confidence 4555666666555321 22 445555666666666655532 2235556666666666666554433 34555666666
Q ss_pred EECCCCCCCCCcCCCchhccCCcccceeecccccCC-CCCchhhcCCCCCCeeecccCcCCCCCchhccCCCCCCEEEcc
Q 038615 154 LYLPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRT-GAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLS 232 (274)
Q Consensus 154 L~L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~-~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~ 232 (274)
|++++|.+ .+..|..+..+++|++|++++|.+. +.+|..+..+++|++|++++|++++..|..+..+++|++|+++
T Consensus 426 L~l~~n~l---~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 502 (570)
T 2z63_A 426 LDISHTHT---RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA 502 (570)
T ss_dssp EECTTSCC---EECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred EeCcCCcc---cccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCC
Confidence 66666655 3344555566666666666666665 3455556666666666666666666556666666666666666
Q ss_pred CCccCcccccCccccccccCCccCCcccc
Q 038615 233 DNKIRALQIIQPSISQSFIKPTFRPNTFC 261 (274)
Q Consensus 233 ~N~l~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (274)
+|++++.++....-...+..+++++|.+.
T Consensus 503 ~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 503 SNQLKSVPDGIFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCcCCCCCHHHhhcccCCcEEEecCCccc
Confidence 66666654433333344455555555544
No 75
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.81 E-value=8.3e-20 Score=159.48 Aligned_cols=186 Identities=20% Similarity=0.238 Sum_probs=154.0
Q ss_pred ceeeeCCCCCEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccC
Q 038615 68 VGITCDYKGSITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGI 147 (274)
Q Consensus 68 ~gv~c~~~~~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~ 147 (274)
....|...+. .+.++++++ .+|. .+. ++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..
T Consensus 26 ~~~~C~~~~~---c~~~~~~l~-~iP~-~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 98 (353)
T 2z80_A 26 ASLSCDRNGI---CKGSSGSLN-SIPS-GLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSS 98 (353)
T ss_dssp -CCEECTTSE---EECCSTTCS-SCCT-TCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred cCCCCCCCeE---eeCCCCCcc-cccc-ccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCC
Confidence 4567765442 788899888 6776 443 58999999999999766668999999999999999999877888999
Q ss_pred CCCCcEEECCCCCCCCCcCCCchh-ccCCcccceeecccccCCCCCc-hhhcCCCCCCeeecccC-cCCCCCchhccCCC
Q 038615 148 FRNLEELYLPSNKLNGFNGTIPRE-IGNLKNLTHLSLITNKRTGAIP-STLGHLTSLLYLDLSSN-QLHSFIPLEIGNFS 224 (274)
Q Consensus 148 l~~L~~L~L~~n~l~~~~~~lp~~-l~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~ls~N-~l~~~~p~~l~~l~ 224 (274)
+++|++|++++|.++ .+|.. +..+++|++|++++|.+.+..+ ..+..+++|++|++++| .+++..+..+..++
T Consensus 99 l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 174 (353)
T 2z80_A 99 LGSLEHLDLSYNYLS----NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLT 174 (353)
T ss_dssp CTTCCEEECCSSCCS----SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred CCCCCEEECCCCcCC----cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCC
Confidence 999999999999995 34444 8899999999999999986444 47889999999999999 47776678899999
Q ss_pred CCCEEEccCCccCcccccCccccccccCCccCCccccCCC
Q 038615 225 ALEELDLSDNKIRALQIIQPSISQSFIKPTFRPNTFCNWK 264 (274)
Q Consensus 225 ~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (274)
+|++|++++|++++..+....-...+..+++++|.+...+
T Consensus 175 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 214 (353)
T 2z80_A 175 FLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLL 214 (353)
T ss_dssp EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHH
T ss_pred CCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccch
Confidence 9999999999999886555555567788889888876544
No 76
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.81 E-value=9.9e-20 Score=168.25 Aligned_cols=179 Identities=26% Similarity=0.260 Sum_probs=150.8
Q ss_pred CCCEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEE
Q 038615 75 KGSITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEEL 154 (274)
Q Consensus 75 ~~~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 154 (274)
..+++.|++++|.+.+..+. .|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..++.+++|++|
T Consensus 27 ~~~l~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLGSY-SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (570)
T ss_dssp CSSCCEEECCSCCCCEECTT-TTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred cccccEEEccCCccCccChh-HhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccc
Confidence 34799999999999855555 89999999999999999998777889999999999999999997777889999999999
Q ss_pred ECCCCCCCCCcCCCchhccCCcccceeecccccCCC-CCchhhcCCCCCCeeecccCcCCCCCchhccCCCCC----CEE
Q 038615 155 YLPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTG-AIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSAL----EEL 229 (274)
Q Consensus 155 ~L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L----~~L 229 (274)
++++|.++.+. +..++.+++|++|++++|.+.+ .+|..++++++|++|++++|.+++..+..++.+++| +.|
T Consensus 106 ~L~~n~l~~l~---~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L 182 (570)
T 2z63_A 106 VAVETNLASLE---NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 182 (570)
T ss_dssp ECTTSCCCCST---TCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEE
T ss_pred cccccccccCC---CccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhc
Confidence 99999996332 2248899999999999999987 578999999999999999999999888888888888 899
Q ss_pred EccCCccCcccccCccccccccCCccCCc
Q 038615 230 DLSDNKIRALQIIQPSISQSFIKPTFRPN 258 (274)
Q Consensus 230 ~l~~N~l~~~~~~~~~~~~~~~~~~~~~~ 258 (274)
++++|.+++..+...... .+..+++++|
T Consensus 183 ~l~~n~l~~~~~~~~~~~-~L~~L~l~~n 210 (570)
T 2z63_A 183 DLSLNPMNFIQPGAFKEI-RLHKLTLRNN 210 (570)
T ss_dssp ECTTCCCCEECTTTTTTC-EEEEEEEESC
T ss_pred ccCCCCceecCHHHhccC-cceeEecccc
Confidence 999999998765443322 3444444443
No 77
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.80 E-value=3.8e-19 Score=165.88 Aligned_cols=172 Identities=22% Similarity=0.240 Sum_probs=137.9
Q ss_pred CCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEECCCCCCCCC
Q 038615 85 ECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGF 164 (274)
Q Consensus 85 ~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 164 (274)
+.+++ .+|. .+ -+++++|+|++|.+++..+..|..+++|++|+|++|.+++..|..|..+++|++|+|++|+++.
T Consensus 40 ~~~l~-~vP~-~l--p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~- 114 (635)
T 4g8a_A 40 ELNFY-KIPD-NL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS- 114 (635)
T ss_dssp TSCCS-SCCS-SS--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-
T ss_pred CCCcC-ccCC-CC--CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC-
Confidence 34455 5665 33 2479999999999997777889999999999999999997767789999999999999999952
Q ss_pred cCCCchhccCCcccceeecccccCCCCCchhhcCCCCCCeeecccCcCCCC-CchhccCCCCCCEEEccCCccCcccccC
Q 038615 165 NGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSF-IPLEIGNFSALEELDLSDNKIRALQIIQ 243 (274)
Q Consensus 165 ~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~-~p~~l~~l~~L~~L~l~~N~l~~~~~~~ 243 (274)
-.+..+.++++|++|++++|.+++..+..++++++|++|++++|.+++. .|..+..+++|++|++++|++++..+..
T Consensus 115 --l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 192 (635)
T 4g8a_A 115 --LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 192 (635)
T ss_dssp --ECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred --CCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccc
Confidence 2245689999999999999999987777899999999999999999764 6788999999999999999999876543
Q ss_pred ccccc----cccCCccCCccccCC
Q 038615 244 PSISQ----SFIKPTFRPNTFCNW 263 (274)
Q Consensus 244 ~~~~~----~~~~~~~~~~~~~~~ 263 (274)
..... .....+++.|.+...
T Consensus 193 l~~L~~l~~~~~~~~ls~n~l~~i 216 (635)
T 4g8a_A 193 LRVLHQMPLLNLSLDLSLNPMNFI 216 (635)
T ss_dssp GHHHHTCTTCCCEEECTTCCCCEE
T ss_pred ccchhhhhhhhhhhhcccCccccc
Confidence 22211 122334555655543
No 78
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.80 E-value=2.6e-19 Score=173.15 Aligned_cols=86 Identities=20% Similarity=0.224 Sum_probs=53.8
Q ss_pred CCEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCcc--CCCCCCCCeeeccCCcCCCccc-hhccCCCCCc
Q 038615 76 GSITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQ--IGSLSNLKYLNLRWNNLTGTIP-TEIGIFRNLE 152 (274)
Q Consensus 76 ~~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~ 152 (274)
.+++.|++++|.+.+..+. .|.++++|++|++++|.+++.+|.. +..+++|++|++++|.+++..+ ..++.+++|+
T Consensus 73 ~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~ 151 (844)
T 3j0a_A 73 PNLRILDLGSSKIYFLHPD-AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLK 151 (844)
T ss_dssp TTCCEEECTTCCCCEECTT-SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCC
T ss_pred CCCCEEECCCCcCcccCHh-HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCC
Confidence 3566666666666644454 6666666666666666666544443 6666666777776666665433 4566677777
Q ss_pred EEECCCCCCC
Q 038615 153 ELYLPSNKLN 162 (274)
Q Consensus 153 ~L~L~~n~l~ 162 (274)
+|++++|.++
T Consensus 152 ~L~Ls~N~i~ 161 (844)
T 3j0a_A 152 SIDFSSNQIF 161 (844)
T ss_dssp EEEEESSCCC
T ss_pred EEECCCCcCC
Confidence 7777776653
No 79
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=1.4e-18 Score=142.76 Aligned_cols=152 Identities=26% Similarity=0.277 Sum_probs=130.1
Q ss_pred ccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEECCCCCCCCCcCCCchhccCCcccceee
Q 038615 103 LQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHLS 182 (274)
Q Consensus 103 L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~lp~~l~~l~~L~~L~ 182 (274)
-+.++.+++.+. .+|..+. ++|++|++++|.+++..|..+..+++|++|++++|+++.+ .+..+..+++|++|+
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i---~~~~~~~l~~L~~L~ 94 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGAL---PVGVFDSLTQLTVLD 94 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC---CTTTTTTCTTCCEEE
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCc---ChhhcccCCCcCEEE
Confidence 467889888887 6776554 8899999999999988888999999999999999999532 234478999999999
Q ss_pred cccccCCCCCchhhcCCCCCCeeecccCcCCCCCchhccCCCCCCEEEccCCccCcccccCccccccccCCccCCcccc
Q 038615 183 LITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKIRALQIIQPSISQSFIKPTFRPNTFC 261 (274)
Q Consensus 183 l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (274)
+++|.+++..+..+..+++|++|++++|.++. +|..+..+++|++|++++|+|++.+.....-...+..+++.+|.+.
T Consensus 95 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 95 LGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCS-CCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CCCCcCCccChhHhCcchhhCeEeccCCcccc-cCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 99999998877778999999999999999994 7888999999999999999999887654444567778888888865
No 80
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.80 E-value=2.3e-19 Score=165.22 Aligned_cols=181 Identities=20% Similarity=0.247 Sum_probs=150.8
Q ss_pred eeCCCCCEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCC
Q 038615 71 TCDYKGSITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRN 150 (274)
Q Consensus 71 ~c~~~~~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 150 (274)
.|...+ + .+.++++++ .+|. .+. ++|++|++++|.+++..|..+..+++|++|++++|.+++..|..++.+++
T Consensus 3 ~C~~~~-~--c~~~~~~l~-~ip~-~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 75 (549)
T 2z81_A 3 SCDASG-V--CDGRSRSFT-SIPS-GLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGS 75 (549)
T ss_dssp EECTTS-E--EECTTSCCS-SCCS-CCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred cCCCCc-e--EECCCCccc-cccc-cCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhcccccc
Confidence 576444 2 688888888 7777 443 78999999999999888889999999999999999999888888999999
Q ss_pred CcEEECCCCCCCCCcCCCchhccCCcccceeecccccCCC-CCchhhcCCCCCCeeecccCcCCCCCc-hhccCCCCCCE
Q 038615 151 LEELYLPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTG-AIPSTLGHLTSLLYLDLSSNQLHSFIP-LEIGNFSALEE 228 (274)
Q Consensus 151 L~~L~L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~L~ls~N~l~~~~p-~~l~~l~~L~~ 228 (274)
|++|++++|.++ +..|..++.+++|++|++++|.+++ ..|..++.+++|++|++++|.+.+.+| ..+..+++|++
T Consensus 76 L~~L~Ls~n~l~---~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 152 (549)
T 2z81_A 76 LEHLDLSDNHLS---SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNE 152 (549)
T ss_dssp CCEEECTTSCCC---SCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEE
T ss_pred CCEEECCCCccC---ccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCe
Confidence 999999999994 4445569999999999999999987 456788999999999999999544454 68999999999
Q ss_pred EEccCCccCcccccCccccccccCCccCCcccc
Q 038615 229 LDLSDNKIRALQIIQPSISQSFIKPTFRPNTFC 261 (274)
Q Consensus 229 L~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (274)
|++++|++++..+....-...+..+++..|.+.
T Consensus 153 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 185 (549)
T 2z81_A 153 LEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185 (549)
T ss_dssp EEEEETTCCEECTTTTTTCSEEEEEEEECSBST
T ss_pred eeccCCcccccChhhhhccccCceEecccCccc
Confidence 999999999876554444556677777777654
No 81
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.79 E-value=8e-20 Score=173.82 Aligned_cols=198 Identities=22% Similarity=0.193 Sum_probs=79.0
Q ss_pred ChhHHHHHHHHHHHhcCCCCCCCCCCCC-CCCCcccceeeeCCCCCEEEEEecCCCcccccCc-----------------
Q 038615 33 ISIHVAASEIERQALLNGGWWKDRIPHN-TSDHCNWVGITCDYKGSITHIELVECSIKGELGS----------------- 94 (274)
Q Consensus 33 ~~~~~~~l~~~~~~l~~~~~~~~~~w~~-~~~~c~w~gv~c~~~~~l~~L~l~~~~l~~~l~~----------------- 94 (274)
...+..++.++..++....|.....|.. ....+.|.++.+. .++++.|++.++++.. .+.
T Consensus 130 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~ 207 (727)
T 4b8c_D 130 VDCTKQALMEMADTLTDSKTAKKQQPTGDSTPSGTATNSAVS-TPLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDD 207 (727)
T ss_dssp --CCCHHHHHHHHHHHHHHTTC----------------------------------------------------------
T ss_pred cccchhhhhhhhhhcccccCcccCCCcCCCCccccCCCceec-CCccceEEeeCCCCCc-chhhHhhcCccCcccccCcc
Confidence 3446778888888887777766677755 4555678887775 3566666666655542 111
Q ss_pred ----------cccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEECCCCCCCCC
Q 038615 95 ----------LNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGF 164 (274)
Q Consensus 95 ----------~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ 164 (274)
..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..++.+++|++|+|++|.++
T Consensus 208 ~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-- 283 (727)
T 4b8c_D 208 DIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-- 283 (727)
T ss_dssp --------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS--
T ss_pred ccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC--
Confidence 13444445555555555544 34444444555555555555554 44444555555555555555542
Q ss_pred cCCCchhccCCcccceeecccccCCCCCchhhcCCCCCCeeecccCcCCCCCchhccCCCC-CCEEEccCCccCcc
Q 038615 165 NGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSA-LEELDLSDNKIRAL 239 (274)
Q Consensus 165 ~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~-L~~L~l~~N~l~~~ 239 (274)
.+|..+..+++|++|+|++|.++ .+|..++.+++|++|+|++|.+++.+|..+..+.. +..+++++|.+++.
T Consensus 284 --~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~ 356 (727)
T 4b8c_D 284 --SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIP 356 (727)
T ss_dssp --SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_pred --ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCc
Confidence 33444445555555555555443 34444555555555555555555444444332211 11244455555443
No 82
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.79 E-value=3.4e-19 Score=143.06 Aligned_cols=155 Identities=19% Similarity=0.211 Sum_probs=130.1
Q ss_pred cCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEECCCCCCCCCcCCCchhccCCc
Q 038615 97 FSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLK 176 (274)
Q Consensus 97 l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~lp~~l~~l~ 176 (274)
.+.+++|++|++++|.++ .+| .+..+++|++|++++|.++ . +..+..+++|++|++++|.+ .+..+..+..++
T Consensus 40 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~-~~~l~~l~~L~~L~l~~n~l---~~~~~~~l~~l~ 112 (197)
T 4ezg_A 40 EAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-N-YNPISGLSNLERLRIMGKDV---TSDKIPNLSGLT 112 (197)
T ss_dssp HHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-C-CGGGTTCTTCCEEEEECTTC---BGGGSCCCTTCT
T ss_pred hhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-c-chhhhcCCCCCEEEeECCcc---CcccChhhcCCC
Confidence 356788999999999998 566 6889999999999999776 3 34788999999999999999 445577789999
Q ss_pred ccceeecccccCCCCCchhhcCCCCCCeeecccCc-CCCCCchhccCCCCCCEEEccCCccCcccccCccccccccCCcc
Q 038615 177 NLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQ-LHSFIPLEIGNFSALEELDLSDNKIRALQIIQPSISQSFIKPTF 255 (274)
Q Consensus 177 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~-l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~ 255 (274)
+|++|++++|.+++..+..+..+++|++|++++|. ++. +| .+..+++|++|++++|++++.. ...-...+..+++
T Consensus 113 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l 188 (197)
T 4ezg_A 113 SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYA 188 (197)
T ss_dssp TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEE
T ss_pred CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEe
Confidence 99999999999998888999999999999999998 665 55 6899999999999999999875 3344566788889
Q ss_pred CCccccC
Q 038615 256 RPNTFCN 262 (274)
Q Consensus 256 ~~~~~~~ 262 (274)
.+|+|++
T Consensus 189 ~~N~i~~ 195 (197)
T 4ezg_A 189 FSQTIGG 195 (197)
T ss_dssp CBC----
T ss_pred eCcccCC
Confidence 9998875
No 83
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.79 E-value=7.5e-19 Score=160.92 Aligned_cols=160 Identities=23% Similarity=0.266 Sum_probs=139.7
Q ss_pred CCCCEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCC--CCCccCCCCCCCCeeeccCCcCCCccchh-ccCCCC
Q 038615 74 YKGSITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSG--SIPPQIGSLSNLKYLNLRWNNLTGTIPTE-IGIFRN 150 (274)
Q Consensus 74 ~~~~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~ 150 (274)
...+++.|++++|.+.+.++. .+..+++|++|++++|.+++ .+|..+..+++|++|++++|.+++.+|.. +..+++
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFE-NCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTT-TCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hCCcccEEEeECCccChhhhh-hhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 346899999999999987887 89999999999999999986 45677899999999999999999757764 788999
Q ss_pred CcEEECCCCCCCCCcCCCchhccCCcccceeecccccCCCCCchhhcCCCCCCeeecccCcCCCCCchh-ccCCCCCCEE
Q 038615 151 LEELYLPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLE-IGNFSALEEL 229 (274)
Q Consensus 151 L~~L~L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~-l~~l~~L~~L 229 (274)
|++|++++|.+ .+.+|..+. ++|+.|++++|+++ .+|..+..+++|++|++++|++++ +|.. +..+++|++|
T Consensus 401 L~~L~Ls~N~l---~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L 473 (520)
T 2z7x_B 401 LLSLNMSSNIL---TDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKI 473 (520)
T ss_dssp CCEEECCSSCC---CGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEE
T ss_pred CCEEECcCCCC---Ccchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEE
Confidence 99999999999 455555553 78999999999999 788888899999999999999996 5554 8899999999
Q ss_pred EccCCccCcccc
Q 038615 230 DLSDNKIRALQI 241 (274)
Q Consensus 230 ~l~~N~l~~~~~ 241 (274)
++++|++++.-.
T Consensus 474 ~l~~N~~~c~c~ 485 (520)
T 2z7x_B 474 WLHTNPWDCSCP 485 (520)
T ss_dssp ECCSSCBCCCHH
T ss_pred ECcCCCCcccCC
Confidence 999999987643
No 84
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.79 E-value=1.4e-18 Score=151.12 Aligned_cols=171 Identities=22% Similarity=0.277 Sum_probs=86.8
Q ss_pred CEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCC--------------------ccCCCCCCCCeeeccCCc
Q 038615 77 SITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIP--------------------PQIGSLSNLKYLNLRWNN 136 (274)
Q Consensus 77 ~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p--------------------~~l~~l~~L~~L~L~~n~ 136 (274)
+++.|+++++.+.+. + .+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.
T Consensus 156 ~L~~L~l~~~~~~~~-~--~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~ 232 (347)
T 4fmz_A 156 GLNYLTVTESKVKDV-T--PIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNK 232 (347)
T ss_dssp TCCEEECCSSCCCCC-G--GGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSC
T ss_pred CCcEEEecCCCcCCc-h--hhccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCc
Confidence 556666666655422 1 14455555555555555543211 014444555555555555
Q ss_pred CCCccchhccCCCCCcEEECCCCCCCCCcCCCchhccCCcccceeecccccCCCCCchhhcCCCCCCeeecccCcCCCCC
Q 038615 137 LTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFI 216 (274)
Q Consensus 137 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~ 216 (274)
+++. +. +..+++|++|++++|.++. + +.+..+++|++|++++|.+++. +.+..+++|+.|++++|.+++..
T Consensus 233 l~~~-~~-~~~l~~L~~L~l~~n~l~~----~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~ 303 (347)
T 4fmz_A 233 ITDL-SP-LANLSQLTWLEIGTNQISD----I-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNED 303 (347)
T ss_dssp CCCC-GG-GTTCTTCCEEECCSSCCCC----C-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGG
T ss_pred cCCC-cc-hhcCCCCCEEECCCCccCC----C-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcC
Confidence 5532 22 4555555555555555532 1 2345555566666666555543 23555556666666666665555
Q ss_pred chhccCCCCCCEEEccCCccCcccccCccccccccCCccCCcccc
Q 038615 217 PLEIGNFSALEELDLSDNKIRALQIIQPSISQSFIKPTFRPNTFC 261 (274)
Q Consensus 217 p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (274)
|..+..+++|++|++++|++++..+ ......+..+++++|.|.
T Consensus 304 ~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 304 MEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp HHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred hhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 5555566666666666666655543 223334455555555543
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.79 E-value=3e-19 Score=147.53 Aligned_cols=161 Identities=22% Similarity=0.205 Sum_probs=134.9
Q ss_pred CCCEEEEEecCCC-cccccCccccCCCCCccEEEccC-CCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCc
Q 038615 75 KGSITHIELVECS-IKGELGSLNFSCFPNLQYLNLWN-NNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLE 152 (274)
Q Consensus 75 ~~~l~~L~l~~~~-l~~~l~~~~l~~l~~L~~L~l~~-n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 152 (274)
..+++.|++++|. +. .++...|..+++|++|++++ |.+++..+..|..+++|++|++++|.+++ +|. +..+++|+
T Consensus 54 l~~L~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~ 130 (239)
T 2xwt_C 54 LPNISRIYVSIDVTLQ-QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTD 130 (239)
T ss_dssp CTTCCEEEEECCSSCC-EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCC
T ss_pred CCCCcEEeCCCCCCcc-eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccc
Confidence 3589999999997 77 55554789999999999999 99997666788999999999999999995 676 88888888
Q ss_pred ---EEECCCC-CCCCCcCCCchhccCCcccc-eeecccccCCCCCchhhcCCCCCCeeecccCc-CCCCCchhccCC-CC
Q 038615 153 ---ELYLPSN-KLNGFNGTIPREIGNLKNLT-HLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQ-LHSFIPLEIGNF-SA 225 (274)
Q Consensus 153 ---~L~L~~n-~l~~~~~~lp~~l~~l~~L~-~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~-l~~~~p~~l~~l-~~ 225 (274)
+|++++| .++.+ .+..+..+++|+ +|++++|.++. +|......++|+.|++++|+ +++..+..+..+ ++
T Consensus 131 ~L~~L~l~~N~~l~~i---~~~~~~~l~~L~~~L~l~~n~l~~-i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~ 206 (239)
T 2xwt_C 131 IFFILEITDNPYMTSI---PVNAFQGLCNETLTLKLYNNGFTS-VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSG 206 (239)
T ss_dssp SEEEEEEESCTTCCEE---CTTTTTTTBSSEEEEECCSCCCCE-ECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBC
T ss_pred cccEEECCCCcchhhc---CcccccchhcceeEEEcCCCCCcc-cCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccC
Confidence 9999999 88522 234588999999 99999999984 44443334899999999995 988667888999 99
Q ss_pred CCEEEccCCccCccccc
Q 038615 226 LEELDLSDNKIRALQII 242 (274)
Q Consensus 226 L~~L~l~~N~l~~~~~~ 242 (274)
|+.|++++|++++.+..
T Consensus 207 L~~L~l~~N~l~~l~~~ 223 (239)
T 2xwt_C 207 PSLLDVSQTSVTALPSK 223 (239)
T ss_dssp CSEEECTTCCCCCCCCT
T ss_pred CcEEECCCCccccCChh
Confidence 99999999999987543
No 86
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.79 E-value=5.8e-20 Score=158.28 Aligned_cols=173 Identities=19% Similarity=0.160 Sum_probs=116.7
Q ss_pred CCEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEE
Q 038615 76 GSITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELY 155 (274)
Q Consensus 76 ~~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 155 (274)
.+++.|++++|.+.+.. .+..+++|++|++++|.+++. + ..++|++|++++|.+++..+ ..+++|++|+
T Consensus 58 ~~L~~L~Ls~n~l~~~~---~~~~l~~L~~L~Ls~n~l~~l-~----~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~ 126 (317)
T 3o53_A 58 TKLELLNLSSNVLYETL---DLESLSTLRTLDLNNNYVQEL-L----VGPSIETLHAANNNISRVSC---SRGQGKKNIY 126 (317)
T ss_dssp TTCCEEECTTSCCEEEE---EETTCTTCCEEECCSSEEEEE-E----ECTTCCEEECCSSCCSEEEE---CCCSSCEEEE
T ss_pred CcCCEEECCCCcCCcch---hhhhcCCCCEEECcCCccccc-c----CCCCcCEEECCCCccCCcCc---cccCCCCEEE
Confidence 35555555555555332 145555566666665555421 1 22556666666666653332 2356788888
Q ss_pred CCCCCCCCCcCCCchhccCCcccceeecccccCCCCCchhh-cCCCCCCeeecccCcCCCCCchhccCCCCCCEEEccCC
Q 038615 156 LPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTL-GHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDN 234 (274)
Q Consensus 156 L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l-~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N 234 (274)
+++|.++ +..+..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+++. + ....+++|++|++++|
T Consensus 127 l~~N~l~---~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N 201 (317)
T 3o53_A 127 LANNKIT---MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSN 201 (317)
T ss_dssp CCSSCCC---SGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSS
T ss_pred CCCCCCC---CccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCC
Confidence 8888884 2334467778899999999999887766666 4688999999999998874 3 2335889999999999
Q ss_pred ccCcccccCccccccccCCccCCccccCCCC
Q 038615 235 KIRALQIIQPSISQSFIKPTFRPNTFCNWKT 265 (274)
Q Consensus 235 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (274)
++++.++. ..-...+..+++++|.|..+|.
T Consensus 202 ~l~~l~~~-~~~l~~L~~L~L~~N~l~~l~~ 231 (317)
T 3o53_A 202 KLAFMGPE-FQSAAGVTWISLRNNKLVLIEK 231 (317)
T ss_dssp CCCEECGG-GGGGTTCSEEECTTSCCCEECT
T ss_pred cCCcchhh-hcccCcccEEECcCCcccchhh
Confidence 99887654 3344567888899998887654
No 87
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.78 E-value=1.1e-18 Score=162.53 Aligned_cols=149 Identities=26% Similarity=0.393 Sum_probs=105.2
Q ss_pred CCEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEE
Q 038615 76 GSITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELY 155 (274)
Q Consensus 76 ~~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 155 (274)
.+++.|+|++|.+.+ +++ +..+++|+.|++++|.+.+ ++ .+..+++|++|+|++|.+++ + +.+..+++|+.|+
T Consensus 65 ~~L~~L~Ls~N~l~~-~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~ 137 (605)
T 1m9s_A 65 PNVTKLFLNGNKLTD-IKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLY 137 (605)
T ss_dssp TTCCEEECTTSCCCC-CGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEEE
T ss_pred CCCCEEEeeCCCCCC-Chh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEEE
Confidence 467777777777764 322 6677777777777777764 33 57777777777777777774 2 3466777777888
Q ss_pred CCCCCCCCCcCCCchhccCCcccceeecccccCCCCCchhhcCCCCCCeeecccCcCCCCCchhccCCCCCCEEEccCCc
Q 038615 156 LPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNK 235 (274)
Q Consensus 156 L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N~ 235 (274)
|++|.++.+ ..+..+++|+.|+|++|.+.+..| +..+++|+.|+|++|.+++. | .+..+++|+.|+|++|+
T Consensus 138 Ls~N~l~~l-----~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 138 LGNNKITDI-----TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQE 208 (605)
T ss_dssp CCSSCCCCC-----GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEECCSEE
T ss_pred CCCCccCCc-----hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEccCCc
Confidence 877777432 346777777788887777776544 67777777888887777763 3 56777777888888777
Q ss_pred cCccc
Q 038615 236 IRALQ 240 (274)
Q Consensus 236 l~~~~ 240 (274)
+++.+
T Consensus 209 l~~~p 213 (605)
T 1m9s_A 209 CLNKP 213 (605)
T ss_dssp EECCC
T ss_pred CcCCc
Confidence 77654
No 88
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.77 E-value=3.8e-19 Score=161.94 Aligned_cols=173 Identities=23% Similarity=0.191 Sum_probs=117.6
Q ss_pred CCEEEEEecCCCcccccCccccCCCCCccEEEccCCC-------------------CCCCCCccCCCCCCCCeeeccCCc
Q 038615 76 GSITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNN-------------------LSGSIPPQIGSLSNLKYLNLRWNN 136 (274)
Q Consensus 76 ~~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~-------------------l~~~~p~~l~~l~~L~~L~L~~n~ 136 (274)
.+++.|++++|.+.+..+ +..+++|++|++++|. +++..+ ..+++|++|++++|.
T Consensus 58 ~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~---~~l~~L~~L~L~~N~ 131 (487)
T 3oja_A 58 TKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSC---SRGQGKKNIYLANNK 131 (487)
T ss_dssp TTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEE---CCCSSCEEEECCSSC
T ss_pred CCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCc---cccCCCCEEECCCCC
Confidence 355566666665554332 4445555555544444 433222 235678888888888
Q ss_pred CCCccchhccCCCCCcEEECCCCCCCCCcCCCchhcc-CCcccceeecccccCCCCCchhhcCCCCCCeeecccCcCCCC
Q 038615 137 LTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIG-NLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSF 215 (274)
Q Consensus 137 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~lp~~l~-~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ 215 (274)
+++..|..++.+++|++|++++|.+ .+..|..+. .+++|+.|++++|.+++. + ....+++|+.|++++|.+++.
T Consensus 132 l~~~~~~~~~~l~~L~~L~Ls~N~l---~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~ 206 (487)
T 3oja_A 132 ITMLRDLDEGCRSRVQYLDLKLNEI---DTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM 206 (487)
T ss_dssp CCSGGGBCGGGGSSEEEEECTTSCC---CEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE
T ss_pred CCCCCchhhcCCCCCCEEECCCCCC---CCcChHHHhhhCCcccEEecCCCccccc-c-ccccCCCCCEEECCCCCCCCC
Confidence 8877777788888888888888888 444555554 678888888888888765 2 234578888888888888874
Q ss_pred CchhccCCCCCCEEEccCCccCcccccCccccccccCCccCCcccc
Q 038615 216 IPLEIGNFSALEELDLSDNKIRALQIIQPSISQSFIKPTFRPNTFC 261 (274)
Q Consensus 216 ~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (274)
|..+..+++|+.|++++|.+++++.. ......+..+++++|.+.
T Consensus 207 -~~~~~~l~~L~~L~Ls~N~l~~lp~~-l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 207 -GPEFQSAAGVTWISLRNNKLVLIEKA-LRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp -CGGGGGGTTCSEEECTTSCCCEECTT-CCCCTTCCEEECTTCCBC
T ss_pred -CHhHcCCCCccEEEecCCcCcccchh-hccCCCCCEEEcCCCCCc
Confidence 44577888888888888888875443 223345666777777765
No 89
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.77 E-value=1.6e-18 Score=135.50 Aligned_cols=137 Identities=25% Similarity=0.236 Sum_probs=98.2
Q ss_pred CCCCccEEEccCCCCC-CCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEECCCCCCCCCcCCCchhccCCcc
Q 038615 99 CFPNLQYLNLWNNNLS-GSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKN 177 (274)
Q Consensus 99 ~l~~L~~L~l~~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~lp~~l~~l~~ 177 (274)
..++|++|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.++ +.+|..+..+++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~---~~~~~~~~~l~~ 96 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIF---GGLDMLAEKLPN 96 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCC---SCCCHHHHHCTT
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCc---hHHHHHHhhCCC
Confidence 3466777777777776 56676667777777777777777744 56677777777777777773 335666666777
Q ss_pred cceeecccccCCCCC-chhhcCCCCCCeeecccCcCCCCCc---hhccCCCCCCEEEccCCccCccc
Q 038615 178 LTHLSLITNKRTGAI-PSTLGHLTSLLYLDLSSNQLHSFIP---LEIGNFSALEELDLSDNKIRALQ 240 (274)
Q Consensus 178 L~~L~l~~n~l~~~~-p~~l~~l~~L~~L~ls~N~l~~~~p---~~l~~l~~L~~L~l~~N~l~~~~ 240 (274)
|++|++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.++..+
T Consensus 97 L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 97 LTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp CCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred CCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 777777777776532 2567777888888888888877544 46777888888888888876654
No 90
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.77 E-value=3.2e-18 Score=136.88 Aligned_cols=131 Identities=27% Similarity=0.346 Sum_probs=96.0
Q ss_pred EEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCc-cCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEECCC
Q 038615 80 HIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPP-QIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPS 158 (274)
Q Consensus 80 ~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 158 (274)
.++++++++. .+|. .+. .++++|++++|.+++..+. .+..+++|++|+|++|.+++..|..+..+++|++|++++
T Consensus 12 ~l~~s~~~l~-~ip~-~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 12 TVDCTGRGLK-EIPR-DIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp EEECTTSCCS-SCCS-CCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred EEEcCCCCcC-cCcc-CCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 4566677775 5665 333 3788888888888765543 377888888888888888877777788888888888888
Q ss_pred CCCCCCcCCCchhccCCcccceeecccccCCCCCchhhcCCCCCCeeecccCcCCCCCc
Q 038615 159 NKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIP 217 (274)
Q Consensus 159 n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p 217 (274)
|+++ +..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+
T Consensus 88 N~l~---~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIK---EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCC---EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcCC---ccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 8884 3334456777788888888888877777777777778888888887776543
No 91
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.77 E-value=4.7e-18 Score=147.73 Aligned_cols=184 Identities=22% Similarity=0.322 Sum_probs=126.5
Q ss_pred CCCEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccc------------
Q 038615 75 KGSITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIP------------ 142 (274)
Q Consensus 75 ~~~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p------------ 142 (274)
..+++.|++++|.....++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+
T Consensus 131 l~~L~~L~l~~n~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l 206 (347)
T 4fmz_A 131 LTKMYSLNLGANHNLSDLS--PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTA 206 (347)
T ss_dssp CTTCCEEECTTCTTCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEEC
T ss_pred CCceeEEECCCCCCccccc--chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccccccccCCCccceeec
Confidence 3579999999997664443 48999999999999999985433 7888999999999998874322
Q ss_pred --------hhccCCCCCcEEECCCCCCCCCcCCCchhccCCcccceeecccccCCCCCchhhcCCCCCCeeecccCcCCC
Q 038615 143 --------TEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHS 214 (274)
Q Consensus 143 --------~~~~~l~~L~~L~L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 214 (274)
..+..+++|++|++++|.++. ++. +..+++|++|++++|.+++. +.+..+++|++|++++|.+++
T Consensus 207 ~~n~l~~~~~~~~~~~L~~L~l~~n~l~~----~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~ 279 (347)
T 4fmz_A 207 YVNQITDITPVANMTRLNSLKIGNNKITD----LSP-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD 279 (347)
T ss_dssp CSSCCCCCGGGGGCTTCCEEECCSSCCCC----CGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC
T ss_pred ccCCCCCCchhhcCCcCCEEEccCCccCC----Ccc-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC
Confidence 013344455555555555531 222 56666677777777766643 356677777777777777776
Q ss_pred CCchhccCCCCCCEEEccCCccCcccccCccccccccCCccCCccccCCCCCccccC
Q 038615 215 FIPLEIGNFSALEELDLSDNKIRALQIIQPSISQSFIKPTFRPNTFCNWKTLQPCVS 271 (274)
Q Consensus 215 ~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~c~~ 271 (274)
. +.+..+++|++|++++|++++..+....-...+..+++++|.+.+.+++..+..
T Consensus 280 ~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~ 334 (347)
T 4fmz_A 280 I--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSK 334 (347)
T ss_dssp C--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGGGGGCTT
T ss_pred C--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccChhhhhc
Confidence 3 346677778888888888776654433444567777888888888777655543
No 92
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.76 E-value=7.4e-18 Score=152.49 Aligned_cols=170 Identities=26% Similarity=0.356 Sum_probs=101.6
Q ss_pred CEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEEC
Q 038615 77 SITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYL 156 (274)
Q Consensus 77 ~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 156 (274)
+++.|++++|.+.+ + . .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|++|++
T Consensus 222 ~L~~L~l~~n~l~~-~-~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L 294 (466)
T 1o6v_A 222 NLDELSLNGNQLKD-I-G-TLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLEL 294 (466)
T ss_dssp TCCEEECCSSCCCC-C-G-GGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEEC
T ss_pred CCCEEECCCCCccc-c-h-hhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEc
Confidence 45555555555542 2 1 34556666666666666654332 5566666666666666664322 556666666666
Q ss_pred CCCCCCCCcCCCchhccCCcccceeecccccCCCCCchhhcCCCCCCeeecccCcCCCCCchhccCCCCCCEEEccCCcc
Q 038615 157 PSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKI 236 (274)
Q Consensus 157 ~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l 236 (274)
++|++++ ++. +..+++|+.|++++|.+.+..| +..+++|+.|++++|.+++. ..+..+++|+.|++++|++
T Consensus 295 ~~n~l~~----~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l 365 (466)
T 1o6v_A 295 NENQLED----ISP-ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQI 365 (466)
T ss_dssp CSSCCSC----CGG-GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCC
T ss_pred CCCcccC----chh-hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCcc
Confidence 6666632 222 5566677777777777665543 55667777777777777663 3566677777777777777
Q ss_pred CcccccCccccccccCCccCCccccCCC
Q 038615 237 RALQIIQPSISQSFIKPTFRPNTFCNWK 264 (274)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (274)
++..+ ..-...+..+++++|.+.++|
T Consensus 366 ~~~~~--~~~l~~L~~L~l~~n~~~~~p 391 (466)
T 1o6v_A 366 SDLTP--LANLTRITQLGLNDQAWTNAP 391 (466)
T ss_dssp CBCGG--GTTCTTCCEEECCCEEEECCC
T ss_pred Cccch--hhcCCCCCEEeccCCcccCCc
Confidence 76654 223344555666666666654
No 93
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.76 E-value=9.2e-18 Score=151.89 Aligned_cols=158 Identities=26% Similarity=0.364 Sum_probs=93.5
Q ss_pred CCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEECCCCCCCCCcCCCchhccCCcc
Q 038615 98 SCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKN 177 (274)
Q Consensus 98 ~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~lp~~l~~l~~ 177 (274)
..+++|++|++++|.+++ + ..+..+++|++|++++|.+++..+ +..+++|++|++++|.++. ++. +..+++
T Consensus 218 ~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~----~~~-~~~l~~ 288 (466)
T 1o6v_A 218 GILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN----ISP-LAGLTA 288 (466)
T ss_dssp GGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCC----CGG-GTTCTT
T ss_pred cccCCCCEEECCCCCccc-c-hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCc----ccc-ccCCCc
Confidence 334455555555555442 1 234555566666666666654332 5566666666666666632 222 566666
Q ss_pred cceeecccccCCCCCchhhcCCCCCCeeecccCcCCCCCchhccCCCCCCEEEccCCccCcccccCccccccccCCccCC
Q 038615 178 LTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKIRALQIIQPSISQSFIKPTFRP 257 (274)
Q Consensus 178 L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~ 257 (274)
|+.|++++|.+.+..+ +..+++|+.|++++|.+++..| +..+++|++|++++|++++... ..-...+..+++++
T Consensus 289 L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~ 362 (466)
T 1o6v_A 289 LTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGH 362 (466)
T ss_dssp CSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred cCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCchh--hccCCCCCEEeCCC
Confidence 7777777776665432 5666777777777777776544 5667777777777777776632 22334566667777
Q ss_pred ccccCCCCCcccc
Q 038615 258 NTFCNWKTLQPCV 270 (274)
Q Consensus 258 ~~~~~~~~l~~c~ 270 (274)
|.+.+++++..|.
T Consensus 363 n~l~~~~~~~~l~ 375 (466)
T 1o6v_A 363 NQISDLTPLANLT 375 (466)
T ss_dssp SCCCBCGGGTTCT
T ss_pred CccCccchhhcCC
Confidence 7777766654443
No 94
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.76 E-value=1.4e-19 Score=156.68 Aligned_cols=156 Identities=24% Similarity=0.252 Sum_probs=79.4
Q ss_pred CEEEEEecCCCcccc-cCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCC-cCCCc-cchhccCCCCCcE
Q 038615 77 SITHIELVECSIKGE-LGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWN-NLTGT-IPTEIGIFRNLEE 153 (274)
Q Consensus 77 ~l~~L~l~~~~l~~~-l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~-~p~~~~~l~~L~~ 153 (274)
+++.|++++|.+.+. ++. .+..+++|++|++++|.+++..+..++.+++|++|++++| .+++. ++..+..+++|++
T Consensus 94 ~L~~L~L~~~~l~~~~~~~-~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~ 172 (336)
T 2ast_B 94 RVQHMDLSNSVIEVSTLHG-ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 172 (336)
T ss_dssp CCCEEECTTCEECHHHHHH-HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred CCCEEEccCCCcCHHHHHH-HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE
Confidence 455555555554433 333 4455555555555555554444444555555555555555 34431 3444445555555
Q ss_pred EECCCC-CCCCCcCCCchhccCCc-ccceeecccc--cCC-CCCchhhcCCCCCCeeecccCc-CCCCCchhccCCCCCC
Q 038615 154 LYLPSN-KLNGFNGTIPREIGNLK-NLTHLSLITN--KRT-GAIPSTLGHLTSLLYLDLSSNQ-LHSFIPLEIGNFSALE 227 (274)
Q Consensus 154 L~L~~n-~l~~~~~~lp~~l~~l~-~L~~L~l~~n--~l~-~~~p~~l~~l~~L~~L~ls~N~-l~~~~p~~l~~l~~L~ 227 (274)
|++++| .++ ...++..+..++ +|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|+
T Consensus 173 L~l~~~~~l~--~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~ 250 (336)
T 2ast_B 173 LNLSWCFDFT--EKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ 250 (336)
T ss_dssp EECCCCTTCC--HHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred EcCCCCCCcC--hHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCC
Confidence 555555 442 111344445555 5555555555 233 2334444555566666666665 4544455555556666
Q ss_pred EEEccCCc
Q 038615 228 ELDLSDNK 235 (274)
Q Consensus 228 ~L~l~~N~ 235 (274)
+|++++|.
T Consensus 251 ~L~l~~~~ 258 (336)
T 2ast_B 251 HLSLSRCY 258 (336)
T ss_dssp EEECTTCT
T ss_pred EeeCCCCC
Confidence 66666653
No 95
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=8.3e-18 Score=141.10 Aligned_cols=149 Identities=26% Similarity=0.360 Sum_probs=128.6
Q ss_pred CCEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEE
Q 038615 76 GSITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELY 155 (274)
Q Consensus 76 ~~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 155 (274)
.+++.|++++|++. .++ .+..+++|++|++++|.+++. +. +..+++|++|++++|.+++ +|... . ++|++|+
T Consensus 41 ~~L~~L~l~~n~i~-~l~--~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~~-l~~~~-~-~~L~~L~ 112 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQ-SLA--GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRLKN-LNGIP-S-ACLSRLF 112 (263)
T ss_dssp TTCSEEECTTSCCC-CCT--TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCSC-CTTCC-C-SSCCEEE
T ss_pred CcCcEEECcCCCcc-cch--HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCccCC-cCccc-c-CcccEEE
Confidence 57899999999988 555 578899999999999999864 44 8999999999999999985 55433 3 8999999
Q ss_pred CCCCCCCCCcCCCchhccCCcccceeecccccCCCCCchhhcCCCCCCeeecccCcCCCCCchhccCCCCCCEEEccCCc
Q 038615 156 LPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNK 235 (274)
Q Consensus 156 L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N~ 235 (274)
+++|.++. + +.+..+++|+.|++++|.+++. + .+..+++|++|++++|.+++. ..+..+++|+.|++++|+
T Consensus 113 L~~N~l~~----~-~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 113 LDNNELRD----T-DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp CCSSCCSB----S-GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEE
T ss_pred ccCCccCC----C-hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCc
Confidence 99999953 3 3588999999999999999875 3 688999999999999999986 678899999999999999
Q ss_pred cCcccc
Q 038615 236 IRALQI 241 (274)
Q Consensus 236 l~~~~~ 241 (274)
+++.+.
T Consensus 184 ~~~~~~ 189 (263)
T 1xeu_A 184 CVNEPV 189 (263)
T ss_dssp EECCCE
T ss_pred ccCCcc
Confidence 987743
No 96
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.75 E-value=1.6e-19 Score=156.29 Aligned_cols=155 Identities=20% Similarity=0.200 Sum_probs=73.1
Q ss_pred CEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCC-CCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEE
Q 038615 77 SITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGS-IPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELY 155 (274)
Q Consensus 77 ~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 155 (274)
+++.|+++++.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..++.+++|++|+
T Consensus 71 ~l~~L~l~~n~l~~~~~~--~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 71 GVIAFRCPRSFMDQPLAE--HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TCSEEECTTCEECSCCCS--CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred cceEEEcCCccccccchh--hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 445555555555433222 33445555555555554432 444444555555555555555544444455555555555
Q ss_pred CCCC-CCCCCcCCCchhccCCcccceeecccc-cCCCC-CchhhcCCC-CCCeeecccC--cCC-CCCchhccCCCCCCE
Q 038615 156 LPSN-KLNGFNGTIPREIGNLKNLTHLSLITN-KRTGA-IPSTLGHLT-SLLYLDLSSN--QLH-SFIPLEIGNFSALEE 228 (274)
Q Consensus 156 L~~n-~l~~~~~~lp~~l~~l~~L~~L~l~~n-~l~~~-~p~~l~~l~-~L~~L~ls~N--~l~-~~~p~~l~~l~~L~~ 228 (274)
+++| .++ ...++..+..+++|++|++++| .+++. ++..+..++ +|++|++++| .++ +.+|..+..+++|++
T Consensus 149 L~~~~~l~--~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~ 226 (336)
T 2ast_B 149 LSGCSGFS--EFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 226 (336)
T ss_dssp CTTCBSCC--HHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSE
T ss_pred CCCCCCCC--HHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCE
Confidence 5555 332 1113333444555555555555 44432 333444455 5555555555 333 223444444555555
Q ss_pred EEccCCc
Q 038615 229 LDLSDNK 235 (274)
Q Consensus 229 L~l~~N~ 235 (274)
|++++|.
T Consensus 227 L~l~~~~ 233 (336)
T 2ast_B 227 LDLSDSV 233 (336)
T ss_dssp EECTTCT
T ss_pred EeCCCCC
Confidence 5555555
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.75 E-value=4.9e-18 Score=148.18 Aligned_cols=176 Identities=21% Similarity=0.193 Sum_probs=130.7
Q ss_pred cccceeeeCCC----------CCEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCC-ccCCCCCCCCe-eec
Q 038615 65 CNWVGITCDYK----------GSITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIP-PQIGSLSNLKY-LNL 132 (274)
Q Consensus 65 c~w~gv~c~~~----------~~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~-L~L 132 (274)
|.+..|.|... .++++|+|++|+++ .++...|.++++|++|++++|.+.+.+| ..|..++++++ +.+
T Consensus 9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 67888888532 36899999999998 6776579999999999999999876555 45788888765 566
Q ss_pred cCCcCCCccchhccCCCCCcEEECCCCCCCCCcCC---------------------Cc-hhccCC-cccceeecccccCC
Q 038615 133 RWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGT---------------------IP-REIGNL-KNLTHLSLITNKRT 189 (274)
Q Consensus 133 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~---------------------lp-~~l~~l-~~L~~L~l~~n~l~ 189 (274)
..|+++...|..+..+++|++|++++|.++.+... ++ ..+..+ ..++.|++++|+++
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 77999977678899999999999999988643210 01 112222 24677888888887
Q ss_pred CCCchhhcCCCCCCeeeccc-CcCCCCCchhccCCCCCCEEEccCCccCccccc
Q 038615 190 GAIPSTLGHLTSLLYLDLSS-NQLHSFIPLEIGNFSALEELDLSDNKIRALQII 242 (274)
Q Consensus 190 ~~~p~~l~~l~~L~~L~ls~-N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~ 242 (274)
. ++.......+|+.+++++ |.++...++.|..+++|++||+++|+|+.++..
T Consensus 168 ~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~ 220 (350)
T 4ay9_X 168 E-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY 220 (350)
T ss_dssp E-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS
T ss_pred C-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh
Confidence 4 344444556788888875 556654446778889999999999999887654
No 98
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.75 E-value=2.7e-18 Score=131.44 Aligned_cols=128 Identities=23% Similarity=0.239 Sum_probs=89.7
Q ss_pred CCCccEEEccCCCCC-CCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEECCCCCCCCCcCCCchhccCCccc
Q 038615 100 FPNLQYLNLWNNNLS-GSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNL 178 (274)
Q Consensus 100 l~~L~~L~l~~n~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~lp~~l~~l~~L 178 (274)
.++++.|++++|.++ +.+|..+..+++|++|++++|.+++. ..++.+++|++|++++|.++ +.+|..+..+++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~---~~~~~~~~~l~~L 90 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVS---GGLEVLAEKCPNL 90 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCC---SCTHHHHHHCTTC
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCccc---chHHHHhhhCCCC
Confidence 456777777777776 56666667777777777777777744 55677777777777777773 3356666667777
Q ss_pred ceeecccccCCCC-CchhhcCCCCCCeeecccCcCCCCCc---hhccCCCCCCEEEcc
Q 038615 179 THLSLITNKRTGA-IPSTLGHLTSLLYLDLSSNQLHSFIP---LEIGNFSALEELDLS 232 (274)
Q Consensus 179 ~~L~l~~n~l~~~-~p~~l~~l~~L~~L~ls~N~l~~~~p---~~l~~l~~L~~L~l~ 232 (274)
++|++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 7777777777652 33567777777778887777776544 467777777777765
No 99
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.75 E-value=5.4e-17 Score=146.59 Aligned_cols=167 Identities=23% Similarity=0.242 Sum_probs=83.6
Q ss_pred CCEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEE
Q 038615 76 GSITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELY 155 (274)
Q Consensus 76 ~~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 155 (274)
.+++.|++++|.+.+ + .++.+++|++|++++|.+++. + +..+++|++|++++|.+++ +| ++.+++|++|+
T Consensus 64 ~~L~~L~Ls~n~l~~-~---~~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~ 133 (457)
T 3bz5_A 64 TGLTKLICTSNNITT-L---DLSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLN 133 (457)
T ss_dssp TTCSEEECCSSCCSC-C---CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEE
T ss_pred CCCCEEEccCCcCCe-E---ccccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEE
Confidence 356666666666653 2 255566666666666666542 2 5555666666666666553 22 45555555555
Q ss_pred CCCCCCCCC------------------cCCCchhccCCcccceeecccccCCCCCchhhcCCCCCCeeecccCcCCCCCc
Q 038615 156 LPSNKLNGF------------------NGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIP 217 (274)
Q Consensus 156 L~~n~l~~~------------------~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p 217 (274)
+++|+++++ .+.+ .+..+++|++|++++|.+++ +| +..+++|+.|++++|.+++.
T Consensus 134 l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~-- 206 (457)
T 3bz5_A 134 CARNTLTEIDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL-- 206 (457)
T ss_dssp CTTSCCSCCCCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC--
T ss_pred CCCCccceeccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee--
Confidence 555555321 1111 13344455555555555544 22 44444555555555555442
Q ss_pred hhccCCCCCCEEEccCCccCcccccCccccccccCCccCCccccCC
Q 038615 218 LEIGNFSALEELDLSDNKIRALQIIQPSISQSFIKPTFRPNTFCNW 263 (274)
Q Consensus 218 ~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (274)
.++.+++|++|++++|++++++ ..-...+..+++++|.|.+.
T Consensus 207 -~l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~~N~l~~~ 248 (457)
T 3bz5_A 207 -DLNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTEL 248 (457)
T ss_dssp -CCTTCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCC
T ss_pred -ccccCCCCCEEECcCCcccccC---ccccCCCCEEEeeCCcCCCc
Confidence 2445555555555555555532 12223344445555555443
No 100
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.75 E-value=4.6e-17 Score=147.07 Aligned_cols=166 Identities=22% Similarity=0.245 Sum_probs=119.4
Q ss_pred CCCEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEE
Q 038615 75 KGSITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEEL 154 (274)
Q Consensus 75 ~~~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 154 (274)
..+++.|+++++.+.+ ++ .+..+++|++|++++|.+++ +| +..+++|++|++++|.+++. + ++.+++|++|
T Consensus 41 l~~L~~L~Ls~n~l~~-~~--~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L 111 (457)
T 3bz5_A 41 LATLTSLDCHNSSITD-MT--GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYL 111 (457)
T ss_dssp HTTCCEEECCSSCCCC-CT--TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEE
T ss_pred cCCCCEEEccCCCccc-Ch--hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEE
Confidence 3579999999999985 44 58899999999999999996 44 88999999999999999964 4 8899999999
Q ss_pred ECCCCCCCCCcCCCchhccCCcccceeecccccCCCCCchhhcCCCCCCeeecccC----------------------cC
Q 038615 155 YLPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSN----------------------QL 212 (274)
Q Consensus 155 ~L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N----------------------~l 212 (274)
++++|+++. +| +..+++|++|++++|.+++. + ++.+++|++|++++| ++
T Consensus 112 ~L~~N~l~~----l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l 182 (457)
T 3bz5_A 112 NCDTNKLTK----LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKI 182 (457)
T ss_dssp ECCSSCCSC----CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCC
T ss_pred ECCCCcCCe----ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCcc
Confidence 999999953 33 77888889999888888763 2 445555555555555 44
Q ss_pred CCCCchhccCCCCCCEEEccCCccCcccccCccccccccCCccCCccccCCC
Q 038615 213 HSFIPLEIGNFSALEELDLSDNKIRALQIIQPSISQSFIKPTFRPNTFCNWK 264 (274)
Q Consensus 213 ~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (274)
++ +| +..+++|+.|++++|++++.. ..-...+..+++++|+|.++|
T Consensus 183 ~~-l~--l~~l~~L~~L~l~~N~l~~~~---l~~l~~L~~L~Ls~N~l~~ip 228 (457)
T 3bz5_A 183 TE-LD--VSQNKLLNRLNCDTNNITKLD---LNQNIQLTFLDCSSNKLTEID 228 (457)
T ss_dssp CC-CC--CTTCTTCCEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC
T ss_pred ce-ec--cccCCCCCEEECcCCcCCeec---cccCCCCCEEECcCCcccccC
Confidence 44 22 444455555555555555441 122344555666666666654
No 101
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.75 E-value=6.3e-19 Score=151.78 Aligned_cols=174 Identities=21% Similarity=0.222 Sum_probs=144.3
Q ss_pred CCEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEE
Q 038615 76 GSITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELY 155 (274)
Q Consensus 76 ~~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 155 (274)
.++++|++++|.+.+..+. .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++. + ..++|++|+
T Consensus 34 ~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-~----~~~~L~~L~ 105 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAA-DLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSIETLH 105 (317)
T ss_dssp GGCSEEECTTSCCCCCCHH-HHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE-E----ECTTCCEEE
T ss_pred CCCCEEECcCCccCcCCHH-HhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc-c----CCCCcCEEE
Confidence 4789999999999865445 78999999999999999986443 88999999999999998843 3 348999999
Q ss_pred CCCCCCCCCcCCCchhccCCcccceeecccccCCCCCchhhcCCCCCCeeecccCcCCCCCchhc-cCCCCCCEEEccCC
Q 038615 156 LPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEI-GNFSALEELDLSDN 234 (274)
Q Consensus 156 L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l-~~l~~L~~L~l~~N 234 (274)
+++|.++.+ + ...+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+ ..+++|++|++++|
T Consensus 106 l~~n~l~~~----~--~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 179 (317)
T 3o53_A 106 AANNNISRV----S--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (317)
T ss_dssp CCSSCCSEE----E--ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred CCCCccCCc----C--ccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC
Confidence 999999532 2 2346889999999999998877788899999999999999998777666 47899999999999
Q ss_pred ccCcccccCccccccccCCccCCccccCCCC
Q 038615 235 KIRALQIIQPSISQSFIKPTFRPNTFCNWKT 265 (274)
Q Consensus 235 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (274)
++++.+... ....+..+++++|.|.+++.
T Consensus 180 ~l~~~~~~~--~l~~L~~L~Ls~N~l~~l~~ 208 (317)
T 3o53_A 180 FIYDVKGQV--VFAKLKTLDLSSNKLAFMGP 208 (317)
T ss_dssp CCCEEECCC--CCTTCCEEECCSSCCCEECG
T ss_pred cCccccccc--ccccCCEEECCCCcCCcchh
Confidence 999885432 36678888999999887754
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=2.2e-17 Score=140.49 Aligned_cols=160 Identities=23% Similarity=0.294 Sum_probs=135.8
Q ss_pred cCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEECCCCCCCCCcCCCchhccCCc
Q 038615 97 FSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLK 176 (274)
Q Consensus 97 l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~lp~~l~~l~ 176 (274)
+..+++|+.|++++|.+.. ++ .+..+++|++|++++|.+++. +. +..+++|++|++++|.++. + +.+..++
T Consensus 42 ~~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~----~-~~l~~l~ 112 (291)
T 1h6t_A 42 QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDI-KP-LANLKNLGWLFLDENKVKD----L-SSLKDLK 112 (291)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC----G-GGGTTCT
T ss_pred hhhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCC-cc-cccCCCCCEEECCCCcCCC----C-hhhccCC
Confidence 4567889999999999984 44 488899999999999999965 44 8999999999999999953 3 3489999
Q ss_pred ccceeecccccCCCCCchhhcCCCCCCeeecccCcCCCCCchhccCCCCCCEEEccCCccCcccccCccccccccCCccC
Q 038615 177 NLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKIRALQIIQPSISQSFIKPTFR 256 (274)
Q Consensus 177 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~ 256 (274)
+|++|++++|.+.+. ..+..+++|+.|++++|.+++. ..+..+++|++|++++|++++..+ ..-...+..++++
T Consensus 113 ~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~ 186 (291)
T 1h6t_A 113 KLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLS 186 (291)
T ss_dssp TCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECC
Confidence 999999999999864 5688999999999999999985 578899999999999999999865 3445678888999
Q ss_pred CccccCCCCCccccC
Q 038615 257 PNTFCNWKTLQPCVS 271 (274)
Q Consensus 257 ~~~~~~~~~l~~c~~ 271 (274)
+|.|.+++.+..+..
T Consensus 187 ~N~i~~l~~l~~l~~ 201 (291)
T 1h6t_A 187 KNHISDLRALAGLKN 201 (291)
T ss_dssp SSCCCBCGGGTTCTT
T ss_pred CCcCCCChhhccCCC
Confidence 999988877655543
No 103
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.74 E-value=5.5e-18 Score=142.21 Aligned_cols=168 Identities=26% Similarity=0.267 Sum_probs=134.8
Q ss_pred EEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEECC
Q 038615 78 ITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLP 157 (274)
Q Consensus 78 l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~ 157 (274)
++.++++++.+.+ ++ .+..+++|++|++++|.++ .++ .+..+++|++|++++|.+++. +. +..+++|++|+++
T Consensus 21 l~~l~l~~~~i~~-~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 21 AVKQNLGKQSVTD-LV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHTCSCTTS-EE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECC
T ss_pred HHHHHhcCCCccc-cc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEECC
Confidence 3345566666653 32 3677899999999999998 455 688999999999999999954 44 8999999999999
Q ss_pred CCCCCCCcCCCchhccCCcccceeecccccCCCCCchhhcCCCCCCeeecccCcCCCCCchhccCCCCCCEEEccCCccC
Q 038615 158 SNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKIR 237 (274)
Q Consensus 158 ~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~ 237 (274)
+|+++.+ |. +.. ++|+.|++++|.+++. +.+..+++|+.|++++|++++. + .+..+++|++|++++|+++
T Consensus 94 ~N~l~~l----~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~ 163 (263)
T 1xeu_A 94 RNRLKNL----NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEIT 163 (263)
T ss_dssp SSCCSCC----TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCC
T ss_pred CCccCCc----Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCc
Confidence 9999643 33 333 8999999999999874 3688999999999999999984 4 6889999999999999999
Q ss_pred cccccCccccccccCCccCCccccCCC
Q 038615 238 ALQIIQPSISQSFIKPTFRPNTFCNWK 264 (274)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (274)
+.. ...-...+..+++++|.+...+
T Consensus 164 ~~~--~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 164 NTG--GLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp BCT--TSTTCCCCCEEEEEEEEEECCC
T ss_pred chH--HhccCCCCCEEeCCCCcccCCc
Confidence 882 2333456777788888877653
No 104
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.74 E-value=1.2e-17 Score=130.49 Aligned_cols=134 Identities=26% Similarity=0.338 Sum_probs=118.8
Q ss_pred CCEEEEEecCCCcc-cccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEE
Q 038615 76 GSITHIELVECSIK-GELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEEL 154 (274)
Q Consensus 76 ~~l~~L~l~~~~l~-~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 154 (274)
.+++.|++++|.+. +.++. .+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~-~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEG-LTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSS-CCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHH-HHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 57999999999998 78888 789999999999999999865 778999999999999999997788888889999999
Q ss_pred ECCCCCCCCCcCCCchhccCCcccceeecccccCCCCCc---hhhcCCCCCCeeecccCcCCC
Q 038615 155 YLPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIP---STLGHLTSLLYLDLSSNQLHS 214 (274)
Q Consensus 155 ~L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p---~~l~~l~~L~~L~ls~N~l~~ 214 (274)
++++|.++.+. .+..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+..
T Consensus 101 ~Ls~N~l~~~~--~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 101 NLSGNKLKDIS--TLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp ECBSSSCCSSG--GGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred eccCCccCcch--hHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 99999996321 22678899999999999999997655 478999999999999999876
No 105
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.74 E-value=1.5e-17 Score=132.92 Aligned_cols=132 Identities=23% Similarity=0.254 Sum_probs=114.9
Q ss_pred cEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccch-hccCCCCCcEEECCCCCCCCCcCCCchhccCCcccceee
Q 038615 104 QYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPT-EIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHLS 182 (274)
Q Consensus 104 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~~~lp~~l~~l~~L~~L~ 182 (274)
+.+++++|.++ .+|..+.. ++++|++++|.+++..+. .++.+++|++|++++|.++ +..|..+..+++|++|+
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~---~~~~~~~~~l~~L~~L~ 84 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT---GIEPNAFEGASHIQELQ 84 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCC---CBCTTTTTTCTTCCEEE
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCC---CcCHhHcCCcccCCEEE
Confidence 68999999996 67776543 899999999999866554 4889999999999999994 45577889999999999
Q ss_pred cccccCCCCCchhhcCCCCCCeeecccCcCCCCCchhccCCCCCCEEEccCCccCcccc
Q 038615 183 LITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKIRALQI 241 (274)
Q Consensus 183 l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~ 241 (274)
+++|.+++..+..+..+++|++|++++|++++..|..+..+++|++|++++|++++.-.
T Consensus 85 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 99999998888889999999999999999999889999999999999999999987643
No 106
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.73 E-value=3.5e-17 Score=151.18 Aligned_cols=114 Identities=32% Similarity=0.406 Sum_probs=62.1
Q ss_pred CCEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEE
Q 038615 76 GSITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELY 155 (274)
Q Consensus 76 ~~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 155 (274)
.+++.|++++|.+. .+| ..+++|++|++++|.+++ +|. +.. +|++|++++|.+++ +|. .+++|++|+
T Consensus 80 ~~L~~L~Ls~N~l~-~ip----~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~ 146 (571)
T 3cvr_A 80 PQITVLEITQNALI-SLP----ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYIN 146 (571)
T ss_dssp TTCSEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEE
T ss_pred CCCCEEECcCCCCc-ccc----cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEe
Confidence 45667777777666 444 235666666666666664 554 443 56666666666664 444 455566666
Q ss_pred CCCCCCCCCcCCCchhccCCcccceeecccccCCCCCchhhcCCCCCCeeecccCcCC
Q 038615 156 LPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLH 213 (274)
Q Consensus 156 L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~ 213 (274)
+++|.++. +|. .+++|++|++++|.+++ +|. +. ++|+.|++++|.|+
T Consensus 147 Ls~N~l~~----lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~ 193 (571)
T 3cvr_A 147 ADNNQLTM----LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE 193 (571)
T ss_dssp CCSSCCSC----CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS
T ss_pred CCCCccCc----CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC
Confidence 66665532 332 33455555555555544 333 32 44555555555544
No 107
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.73 E-value=5.2e-17 Score=129.98 Aligned_cols=126 Identities=22% Similarity=0.277 Sum_probs=67.2
Q ss_pred EEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEECCCC
Q 038615 80 HIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSN 159 (274)
Q Consensus 80 ~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 159 (274)
.++++++++. .+|. .+ .++|++|++++|.++ .+|..+..+++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 14 ~l~~~~~~l~-~ip~-~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPK-GI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp EEECTTSCCS-SCCS-CC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEcCCCCCC-cCCC-CC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 3455555555 4444 22 245666666666665 45555666666666666666666544455555666666666666
Q ss_pred CCCCCcCCCchhccCCcccceeecccccCCCCCchhhcCCCCCCeeecccCcCC
Q 038615 160 KLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLH 213 (274)
Q Consensus 160 ~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~ 213 (274)
+++ +..|..+..+++|++|++++|.++...+..+..+++|+.|++++|.+.
T Consensus 89 ~l~---~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLR---CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCC---BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccC---EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 553 222334455555555555555555443334445555555555555543
No 108
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.72 E-value=8.3e-18 Score=156.95 Aligned_cols=53 Identities=28% Similarity=0.340 Sum_probs=23.9
Q ss_pred CEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCC
Q 038615 77 SITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLT 138 (274)
Q Consensus 77 ~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~ 138 (274)
+++.|++++|.++ .++. .+++|++|++++|.++ .+|. .+++|++|++++|.++
T Consensus 62 ~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~ 114 (622)
T 3g06_A 62 HITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLT 114 (622)
T ss_dssp TCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCC
T ss_pred CCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCC
Confidence 3444444444444 2322 2345555555555554 2332 3344555555555444
No 109
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.72 E-value=1.6e-16 Score=125.09 Aligned_cols=112 Identities=25% Similarity=0.228 Sum_probs=63.4
Q ss_pred CCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEECCCCCCCCCcCCCchhccCCcccce
Q 038615 101 PNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTH 180 (274)
Q Consensus 101 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~lp~~l~~l~~L~~ 180 (274)
++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ +..+..+..+++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~---~~~~~~~~~l~~L~~ 104 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ---SLPNGVFDKLTQLKE 104 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC---CCCTTTTTTCTTCCE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCcc---ccCHHHhhCCcccCE
Confidence 56777777777776555555666677777777777776444444566666666666666663 112223445555555
Q ss_pred eecccccCCCCCchhhcCCCCCCeeecccCcCCCC
Q 038615 181 LSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSF 215 (274)
Q Consensus 181 L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~ 215 (274)
|++++|.+++..+..+..+++|++|++++|.+++.
T Consensus 105 L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 105 LALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred EECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 55555555543333344455555555555555443
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=1.2e-16 Score=148.78 Aligned_cols=172 Identities=27% Similarity=0.340 Sum_probs=146.5
Q ss_pred CCCEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEE
Q 038615 75 KGSITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEEL 154 (274)
Q Consensus 75 ~~~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 154 (274)
..+++.|+++++.+. .++ .+..+++|+.|+|++|.+.+..+ +..+++|++|+|++|.+++ +| .+..+++|++|
T Consensus 42 L~~L~~L~l~~n~i~-~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 42 LNSIDQIIANNSDIK-SVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSL 114 (605)
T ss_dssp HTTCCCCBCTTCCCC-CCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEE
T ss_pred CCCCCEEECcCCCCC-CCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEE
Confidence 357888999999987 444 48889999999999999986444 8899999999999999985 44 68899999999
Q ss_pred ECCCCCCCCCcCCCchhccCCcccceeecccccCCCCCchhhcCCCCCCeeecccCcCCCCCchhccCCCCCCEEEccCC
Q 038615 155 YLPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDN 234 (274)
Q Consensus 155 ~L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N 234 (274)
++++|.++. + +.+..+++|+.|++++|.+.+. ..+..+++|+.|+|++|.+++..| +..+++|+.|+|++|
T Consensus 115 ~Ls~N~l~~----l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 115 SLEHNGISD----I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 185 (605)
T ss_dssp ECTTSCCCC----C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred EecCCCCCC----C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCC
Confidence 999999953 2 4588999999999999999875 678999999999999999998666 899999999999999
Q ss_pred ccCcccccCccccccccCCccCCccccCCC
Q 038615 235 KIRALQIIQPSISQSFIKPTFRPNTFCNWK 264 (274)
Q Consensus 235 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (274)
+|++++. ..-...+..+++++|++...|
T Consensus 186 ~i~~l~~--l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 186 HISDLRA--LAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp CCCBCGG--GTTCTTCSEEECCSEEEECCC
T ss_pred CCCCChH--HccCCCCCEEEccCCcCcCCc
Confidence 9998743 233456788889998887754
No 111
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.72 E-value=1.1e-19 Score=160.66 Aligned_cols=188 Identities=20% Similarity=0.199 Sum_probs=119.5
Q ss_pred CCEEEEEecCCCccc----ccCccccCCCCCccEEEccCCCCCCCCCccC----CCC---------CCCCeeeccCCcCC
Q 038615 76 GSITHIELVECSIKG----ELGSLNFSCFPNLQYLNLWNNNLSGSIPPQI----GSL---------SNLKYLNLRWNNLT 138 (274)
Q Consensus 76 ~~l~~L~l~~~~l~~----~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l----~~l---------~~L~~L~L~~n~l~ 138 (274)
.+++.|++++|.+.+ .++. .+..+++|++|++++|.+++..+..+ ..+ ++|++|++++|.++
T Consensus 94 ~~L~~L~Ls~n~l~~~~~~~l~~-~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~ 172 (386)
T 2ca6_A 94 PKLHTVRLSDNAFGPTAQEPLID-FLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE 172 (386)
T ss_dssp TTCCEEECCSCCCCTTTHHHHHH-HHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred CcccEEECCCCcCCHHHHHHHHH-HHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC
Confidence 467777777777764 2444 56667777777777777653222222 222 67777777777776
Q ss_pred -Cccc---hhccCCCCCcEEECCCCCCCC--CcCCCchhccCCcccceeecccccCC----CCCchhhcCCCCCCeeecc
Q 038615 139 -GTIP---TEIGIFRNLEELYLPSNKLNG--FNGTIPREIGNLKNLTHLSLITNKRT----GAIPSTLGHLTSLLYLDLS 208 (274)
Q Consensus 139 -~~~p---~~~~~l~~L~~L~L~~n~l~~--~~~~lp~~l~~l~~L~~L~l~~n~l~----~~~p~~l~~l~~L~~L~ls 208 (274)
+.++ ..+..+++|++|++++|+++. +...+|..+..+++|++|++++|.++ +.+|..+..+++|++|+++
T Consensus 173 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~ 252 (386)
T 2ca6_A 173 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN 252 (386)
T ss_dssp GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECT
T ss_pred cHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECC
Confidence 3334 345567777788887777741 00012325667778888888888775 4566777777888888888
Q ss_pred cCcCCCC----Cchhcc--CCCCCCEEEccCCccCc-----ccccCccccccccCCccCCccccCCC
Q 038615 209 SNQLHSF----IPLEIG--NFSALEELDLSDNKIRA-----LQIIQPSISQSFIKPTFRPNTFCNWK 264 (274)
Q Consensus 209 ~N~l~~~----~p~~l~--~l~~L~~L~l~~N~l~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (274)
+|.+++. ++..+. .+++|++|++++|++++ ++.........+..+++++|.|.+-.
T Consensus 253 ~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 253 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp TCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 8888765 455553 37788888888888876 22111111355667778888777543
No 112
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.72 E-value=1.3e-16 Score=125.66 Aligned_cols=132 Identities=24% Similarity=0.216 Sum_probs=107.4
Q ss_pred cEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEECCCCCCCCCcCCCchhccCCcccceeec
Q 038615 104 QYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHLSL 183 (274)
Q Consensus 104 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~lp~~l~~l~~L~~L~l 183 (274)
+.+++++++++ .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.++. ..+..+..+++|++|++
T Consensus 10 ~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS---LPDGVFDKLTKLTILYL 83 (177)
T ss_dssp TEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC---CCTTTTTTCTTCCEEEC
T ss_pred CEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceE---eChhHccCCCccCEEEC
Confidence 45556666655 344333 3689999999999996666678899999999999999952 22344788999999999
Q ss_pred ccccCCCCCchhhcCCCCCCeeecccCcCCCCCchhccCCCCCCEEEccCCccCcccc
Q 038615 184 ITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKIRALQI 241 (274)
Q Consensus 184 ~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~ 241 (274)
++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+
T Consensus 84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 84 HENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 9999998777778899999999999999998666667889999999999999988654
No 113
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.71 E-value=1.8e-17 Score=126.82 Aligned_cols=129 Identities=25% Similarity=0.324 Sum_probs=113.9
Q ss_pred CCEEEEEecCCCcc-cccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEE
Q 038615 76 GSITHIELVECSIK-GELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEEL 154 (274)
Q Consensus 76 ~~l~~L~l~~~~l~-~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 154 (274)
.+++.|++++|.+. +.++. .+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 57899999999998 78888 889999999999999999865 678999999999999999997788888889999999
Q ss_pred ECCCCCCCCCcCCCchhccCCcccceeecccccCCCCCc---hhhcCCCCCCeeeccc
Q 038615 155 YLPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIP---STLGHLTSLLYLDLSS 209 (274)
Q Consensus 155 ~L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p---~~l~~l~~L~~L~ls~ 209 (274)
++++|.++++ ..+..+..+++|++|++++|.+++..+ ..+..+++|++|++++
T Consensus 94 ~ls~N~i~~~--~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDL--STIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSH--HHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCCh--HHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999999532 234678999999999999999997765 5788999999999874
No 114
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.71 E-value=7.3e-18 Score=152.16 Aligned_cols=171 Identities=18% Similarity=0.172 Sum_probs=75.0
Q ss_pred CCEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCC-------------CeeeccCCcCCCccc
Q 038615 76 GSITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNL-------------KYLNLRWNNLTGTIP 142 (274)
Q Consensus 76 ~~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L-------------~~L~L~~n~l~~~~p 142 (274)
.++++|+++++.+ |.+|. .++++++|++|++++|.+.|.+|..++.+++| ++|++++|.+++ +|
T Consensus 11 ~~L~~L~l~~n~l-~~iP~-~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp 87 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPV-EAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LP 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CC
T ss_pred ccchhhhcccCch-hhCCh-hHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CC
Confidence 4566677777776 56666 66777777777777766666666666655543 566666666553 33
Q ss_pred hhccCCCCCcEEECCCCCCCCCcCCCchhc----------------cCC-cccceeecccccCCCCCchhhcCCCCCCee
Q 038615 143 TEIGIFRNLEELYLPSNKLNGFNGTIPREI----------------GNL-KNLTHLSLITNKRTGAIPSTLGHLTSLLYL 205 (274)
Q Consensus 143 ~~~~~l~~L~~L~L~~n~l~~~~~~lp~~l----------------~~l-~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 205 (274)
. ..++|++|++++|.+++ +|..+ ... ++|++|++++|.+.+ +| .++.+++|++|
T Consensus 88 ~---~~~~L~~L~l~~n~l~~----lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L 158 (454)
T 1jl5_A 88 E---LPPHLESLVASCNSLTE----LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKII 158 (454)
T ss_dssp S---CCTTCSEEECCSSCCSS----CCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEE
T ss_pred C---CcCCCCEEEccCCcCCc----cccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEE
Confidence 2 12455555555555532 22211 001 345555555555554 34 35555555555
Q ss_pred ecccCcCCCCCchhccCCCCCCEEEccCCccCcccccCccccccccCCccCCccccCCC
Q 038615 206 DLSSNQLHSFIPLEIGNFSALEELDLSDNKIRALQIIQPSISQSFIKPTFRPNTFCNWK 264 (274)
Q Consensus 206 ~ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (274)
++++|++++ +|..+ ++|++|++++|++++.+. ..-...+..+++++|.+.++|
T Consensus 159 ~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~l~~--~~~l~~L~~L~l~~N~l~~l~ 211 (454)
T 1jl5_A 159 DVDNNSLKK-LPDLP---PSLEFIAAGNNQLEELPE--LQNLPFLTAIYADNNSLKKLP 211 (454)
T ss_dssp ECCSSCCSC-CCCCC---TTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSCCSSCC
T ss_pred ECCCCcCcc-cCCCc---ccccEEECcCCcCCcCcc--ccCCCCCCEEECCCCcCCcCC
Confidence 555555554 33322 355555555555555421 222334445555555555543
No 115
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.71 E-value=5.5e-19 Score=154.92 Aligned_cols=157 Identities=24% Similarity=0.241 Sum_probs=72.8
Q ss_pred EEEEEecCCCcccccC----ccccCCCC-CccEEEccCCCCCCCCCccCCCC-----CCCCeeeccCCcCCCccchh---
Q 038615 78 ITHIELVECSIKGELG----SLNFSCFP-NLQYLNLWNNNLSGSIPPQIGSL-----SNLKYLNLRWNNLTGTIPTE--- 144 (274)
Q Consensus 78 l~~L~l~~~~l~~~l~----~~~l~~l~-~L~~L~l~~n~l~~~~p~~l~~l-----~~L~~L~L~~n~l~~~~p~~--- 144 (274)
++.|++++|.+.+..+ . .+..++ +|++|++++|.+++..+..+..+ ++|++|++++|.+++..+..
T Consensus 24 L~~L~Ls~n~l~~~~~~~l~~-~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 102 (362)
T 3goz_A 24 VTSLDLSLNNLYSISTVELIQ-AFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK 102 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHH-HHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred ceEEEccCCCCChHHHHHHHH-HHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence 5555555555553222 2 344455 55555555555554444333332 55555555555555443332
Q ss_pred -ccCC-CCCcEEECCCCCCCCCcCCCchh----ccC-CcccceeecccccCCCCCc----hhhcCCC-CCCeeecccCcC
Q 038615 145 -IGIF-RNLEELYLPSNKLNGFNGTIPRE----IGN-LKNLTHLSLITNKRTGAIP----STLGHLT-SLLYLDLSSNQL 212 (274)
Q Consensus 145 -~~~l-~~L~~L~L~~n~l~~~~~~lp~~----l~~-l~~L~~L~l~~n~l~~~~p----~~l~~l~-~L~~L~ls~N~l 212 (274)
+..+ ++|++|++++|.++ +..+.. +.. .++|++|++++|.+.+..+ ..+...+ +|++|++++|.+
T Consensus 103 ~l~~~~~~L~~L~Ls~N~l~---~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 179 (362)
T 3goz_A 103 TLAAIPFTITVLDLGWNDFS---SKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL 179 (362)
T ss_dssp HHHTSCTTCCEEECCSSCGG---GSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred HHHhCCCCccEEECcCCcCC---cHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCC
Confidence 2222 45555555555552 111111 222 1355555555555553222 2223333 555555555555
Q ss_pred CCCCchhc----cCC-CCCCEEEccCCccCc
Q 038615 213 HSFIPLEI----GNF-SALEELDLSDNKIRA 238 (274)
Q Consensus 213 ~~~~p~~l----~~l-~~L~~L~l~~N~l~~ 238 (274)
++..+..+ ..+ ++|++|++++|.+++
T Consensus 180 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 180 ASKNCAELAKFLASIPASVTSLDLSANLLGL 210 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred chhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence 54443222 223 355555555555554
No 116
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.70 E-value=3.3e-16 Score=141.31 Aligned_cols=122 Identities=30% Similarity=0.404 Sum_probs=67.5
Q ss_pred CCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEECCCCCCCCCcCCCchhccCCcccce
Q 038615 101 PNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTH 180 (274)
Q Consensus 101 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~lp~~l~~l~~L~~ 180 (274)
++|++|++++|.+++ +| .+..+++|++|++++|.+++ +|..+ .+|++|++++|.++. +| .+..+++|++
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~----l~-~~~~l~~L~~ 199 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE----LP-ELQNLPFLTA 199 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS----CC-CCTTCTTCCE
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc----Cc-cccCCCCCCE
Confidence 456666666666664 45 36666666666666666663 44322 356666666666531 33 3556666666
Q ss_pred eecccccCCCCCchhhcCCCCCCeeecccCcCCCCCchhccCCCCCCEEEccCCccCcc
Q 038615 181 LSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKIRAL 239 (274)
Q Consensus 181 L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~ 239 (274)
|++++|.+++ +|.. .++|++|++++|.++ .+| .++.+++|++|++++|++++.
T Consensus 200 L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l 252 (454)
T 1jl5_A 200 IYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTL 252 (454)
T ss_dssp EECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSC
T ss_pred EECCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCcc
Confidence 6666666554 2221 135555555555555 244 255555566666666655554
No 117
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.70 E-value=7.8e-19 Score=155.11 Aligned_cols=186 Identities=18% Similarity=0.224 Sum_probs=127.4
Q ss_pred CCCEEEEEecCCCc---ccccCcc------ccCCCCCccEEEccCCCCCC----CCCccCCCCCCCCeeeccCCcCCCcc
Q 038615 75 KGSITHIELVECSI---KGELGSL------NFSCFPNLQYLNLWNNNLSG----SIPPQIGSLSNLKYLNLRWNNLTGTI 141 (274)
Q Consensus 75 ~~~l~~L~l~~~~l---~~~l~~~------~l~~l~~L~~L~l~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~ 141 (274)
..+++.|++++|.+ .+.+|.. .+..+++|++|++++|.+.+ .++..+..+++|++|+|++|.+++..
T Consensus 59 ~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~ 138 (386)
T 2ca6_A 59 KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQA 138 (386)
T ss_dssp CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHH
T ss_pred CCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHH
Confidence 34677788877533 3333330 23677888888888888775 35556677788888888888876433
Q ss_pred chh----ccCC---------CCCcEEECCCCCCCCCcCCCc---hhccCCcccceeecccccCCC-----CCchhhcCCC
Q 038615 142 PTE----IGIF---------RNLEELYLPSNKLNGFNGTIP---REIGNLKNLTHLSLITNKRTG-----AIPSTLGHLT 200 (274)
Q Consensus 142 p~~----~~~l---------~~L~~L~L~~n~l~~~~~~lp---~~l~~l~~L~~L~l~~n~l~~-----~~p~~l~~l~ 200 (274)
+.. +..+ ++|++|++++|+++ .+.++ ..+..+++|++|++++|.+.. ..+..+..++
T Consensus 139 ~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~--~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~ 216 (386)
T 2ca6_A 139 GAKIARALQELAVNKKAKNAPPLRSIICGRNRLE--NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQ 216 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT--GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCT
T ss_pred HHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC--cHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCC
Confidence 333 3333 78888888888874 23444 356677888888888888762 2333677888
Q ss_pred CCCeeecccCcCC----CCCchhccCCCCCCEEEccCCccCccccc--Cccc----cccccCCccCCccccC
Q 038615 201 SLLYLDLSSNQLH----SFIPLEIGNFSALEELDLSDNKIRALQII--QPSI----SQSFIKPTFRPNTFCN 262 (274)
Q Consensus 201 ~L~~L~ls~N~l~----~~~p~~l~~l~~L~~L~l~~N~l~~~~~~--~~~~----~~~~~~~~~~~~~~~~ 262 (274)
+|++|++++|.++ +.+|..+..+++|++|++++|++++.... +..+ ...+..+++++|.|..
T Consensus 217 ~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 217 ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp TCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred CccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 8999999999886 55677888888899999999988765221 1222 4557777888888776
No 118
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.69 E-value=7.1e-18 Score=160.42 Aligned_cols=146 Identities=27% Similarity=0.382 Sum_probs=121.3
Q ss_pred CCCEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEE
Q 038615 75 KGSITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEEL 154 (274)
Q Consensus 75 ~~~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 154 (274)
...++.|+|++|.+. .++. .+..+++|++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..++.+++|++|
T Consensus 223 l~~L~~L~Ls~n~l~-~l~~-~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 223 DQLWHALDLSNLQIF-NISA-NIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYF 298 (727)
T ss_dssp CCCCCEEECTTSCCS-CCCG-GGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEE
T ss_pred CCCCcEEECCCCCCC-CCCh-hhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEE
Confidence 457899999999998 7887 6779999999999999999 88999999999999999999999 889999999999999
Q ss_pred ECCCCCCCCCcCCCchhccCCcccceeecccccCCCCCchhhcCCC-CCCeeecccCcCCCCCchhccCCCCCCEEEccC
Q 038615 155 YLPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLT-SLLYLDLSSNQLHSFIPLEIGNFSALEELDLSD 233 (274)
Q Consensus 155 ~L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~-~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~ 233 (274)
+|++|.++ .+|..+..+++|++|+|++|.+++.+|..+.... .+..+++++|.+++.+|. .|+.|+++.
T Consensus 299 ~L~~N~l~----~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~ 368 (727)
T 4b8c_D 299 YFFDNMVT----TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINT 368 (727)
T ss_dssp ECCSSCCC----CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C--------
T ss_pred ECCCCCCC----ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeec
Confidence 99999984 6788899999999999999999998888776543 233578999999998885 456677777
Q ss_pred C
Q 038615 234 N 234 (274)
Q Consensus 234 N 234 (274)
|
T Consensus 369 n 369 (727)
T 4b8c_D 369 D 369 (727)
T ss_dssp -
T ss_pred c
Confidence 6
No 119
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.68 E-value=5.3e-18 Score=148.63 Aligned_cols=179 Identities=20% Similarity=0.136 Sum_probs=138.5
Q ss_pred EEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCC----ccCCCCC-CCCeeeccCCcCCCccchhccCC-----C
Q 038615 80 HIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIP----PQIGSLS-NLKYLNLRWNNLTGTIPTEIGIF-----R 149 (274)
Q Consensus 80 ~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p----~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l-----~ 149 (274)
..+++.++++|.++. .+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ +
T Consensus 2 ~~~ls~n~~~~~~~~-~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 2 NYKLTLHPGSNPVEE-FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EEECCCCTTCCHHHH-HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred ccccccccchHHHHH-HHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence 357888999988777 66777779999999999987665 6677888 89999999999997767666654 8
Q ss_pred CCcEEECCCCCCCCCcCCCchh----ccCC-cccceeecccccCCCCCchhhc----C-CCCCCeeecccCcCCCCC---
Q 038615 150 NLEELYLPSNKLNGFNGTIPRE----IGNL-KNLTHLSLITNKRTGAIPSTLG----H-LTSLLYLDLSSNQLHSFI--- 216 (274)
Q Consensus 150 ~L~~L~L~~n~l~~~~~~lp~~----l~~l-~~L~~L~l~~n~l~~~~p~~l~----~-l~~L~~L~ls~N~l~~~~--- 216 (274)
+|++|++++|.++ +..+.. +..+ ++|++|++++|.+++..+..+. . .++|++|++++|.+++..
T Consensus 81 ~L~~L~Ls~n~l~---~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~ 157 (362)
T 3goz_A 81 NVTSLNLSGNFLS---YKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE 157 (362)
T ss_dssp TCCEEECCSSCGG---GSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHH
T ss_pred CccEEECcCCcCC---hHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHH
Confidence 9999999999984 333333 4445 8999999999999887665543 3 369999999999998643
Q ss_pred -chhccCCC-CCCEEEccCCccCcccccCcc-----ccccccCCccCCccccC
Q 038615 217 -PLEIGNFS-ALEELDLSDNKIRALQIIQPS-----ISQSFIKPTFRPNTFCN 262 (274)
Q Consensus 217 -p~~l~~l~-~L~~L~l~~N~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 262 (274)
+..+...+ +|++|++++|++++....... ....++.+++++|.|..
T Consensus 158 l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 158 LIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGL 210 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence 34455665 999999999999876542111 11467777888888776
No 120
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.67 E-value=6.7e-16 Score=123.48 Aligned_cols=129 Identities=24% Similarity=0.323 Sum_probs=113.5
Q ss_pred cEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEECCCCCCCCCcCCCchhccCCcccceeec
Q 038615 104 QYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHLSL 183 (274)
Q Consensus 104 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~lp~~l~~l~~L~~L~l 183 (274)
+.++++++.++ .+|..+. ++|++|++++|.++ .+|..+..+++|++|++++|.++. ..+..+..+++|++|++
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~---i~~~~f~~l~~L~~L~L 85 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIST---LSNQSFSNMTQLLTLIL 85 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCC---CCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCE---eCHhHccCCCCCCEEEC
Confidence 57899999988 6776553 68999999999998 788899999999999999999953 33466899999999999
Q ss_pred ccccCCCCCchhhcCCCCCCeeecccCcCCCCCchhccCCCCCCEEEccCCccCcc
Q 038615 184 ITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKIRAL 239 (274)
Q Consensus 184 ~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~ 239 (274)
++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++...
T Consensus 86 s~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 86 SYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence 99999998888899999999999999999987677799999999999999998653
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.67 E-value=5.2e-19 Score=163.70 Aligned_cols=107 Identities=21% Similarity=0.246 Sum_probs=60.0
Q ss_pred CCeeeccCCcCCCccchhccCCCCCcEEECCCCCCCCCcCCCchhccCCcccceeecccccCCCCCchhhcCCCCCCeee
Q 038615 127 LKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLD 206 (274)
Q Consensus 127 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 206 (274)
|++|++++|.+++ +|. ++.+++|+.|++++|.++ .+|..++.+++|+.|++++|.+++ +| .++.+++|+.|+
T Consensus 443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~----~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~ 514 (567)
T 1dce_A 443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR----ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELL 514 (567)
T ss_dssp CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC----CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEE
T ss_pred ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc----ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEE
Confidence 4555555555553 444 555555666666665553 445555555556666666665554 34 455555566666
Q ss_pred cccCcCCCCC-chhccCCCCCCEEEccCCccCcccc
Q 038615 207 LSSNQLHSFI-PLEIGNFSALEELDLSDNKIRALQI 241 (274)
Q Consensus 207 ls~N~l~~~~-p~~l~~l~~L~~L~l~~N~l~~~~~ 241 (274)
+++|.+++.. |..++.+++|+.|++++|++++.++
T Consensus 515 Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 515 LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp CCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 6666655544 5555555566666666665555543
No 122
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.65 E-value=1.6e-15 Score=141.51 Aligned_cols=167 Identities=26% Similarity=0.350 Sum_probs=88.0
Q ss_pred CCCEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEE
Q 038615 75 KGSITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEEL 154 (274)
Q Consensus 75 ~~~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 154 (274)
..+++.|++++|.++ .++. .+++|++|++++|.+++ +|. .+++|++|++++|.++ .+|.. +++|++|
T Consensus 80 l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~-~lp~~---l~~L~~L 146 (622)
T 3g06_A 80 PPELRTLEVSGNQLT-SLPV----LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLT-SLPVL---PPGLQEL 146 (622)
T ss_dssp CTTCCEEEECSCCCS-CCCC----CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEE
T ss_pred CCCCCEEEcCCCcCC-cCCC----CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCC-cCCCC---CCCCCEE
Confidence 357889999999887 4554 56778888888887764 343 3455666666666655 23432 2555555
Q ss_pred ECCCCCCCCCcCCCchhccCC--------------cccceeecccccCCCCCchhhc-----------------CCCCCC
Q 038615 155 YLPSNKLNGFNGTIPREIGNL--------------KNLTHLSLITNKRTGAIPSTLG-----------------HLTSLL 203 (274)
Q Consensus 155 ~L~~n~l~~~~~~lp~~l~~l--------------~~L~~L~l~~n~l~~~~p~~l~-----------------~l~~L~ 203 (274)
++++|.++.+.. .+..+..+ ++|+.|++++|.+++ +|..+. .+++|+
T Consensus 147 ~Ls~N~l~~l~~-~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~~~~~~L~ 224 (622)
T 3g06_A 147 SVSDNQLASLPA-LPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLTSLPALPSGLK 224 (622)
T ss_dssp ECCSSCCSCCCC-CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCCCCCTTCC
T ss_pred ECcCCcCCCcCC-ccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCC-CCCccchhhEEECcCCcccccCCCCCCCC
Confidence 555555543211 11122211 555555666555553 221110 114455
Q ss_pred eeecccCcCCCCCchhccCCCCCCEEEccCCccCcccccCccccccccCCccCCccccCCC
Q 038615 204 YLDLSSNQLHSFIPLEIGNFSALEELDLSDNKIRALQIIQPSISQSFIKPTFRPNTFCNWK 264 (274)
Q Consensus 204 ~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (274)
.|++++|.+++ +| ..+++|+.|++++|+|++++. ...++..+++++|.|..+|
T Consensus 225 ~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~lp 277 (622)
T 3g06_A 225 ELIVSGNRLTS-LP---VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRLP 277 (622)
T ss_dssp EEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSCC
T ss_pred EEEccCCccCc-CC---CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcCC
Confidence 55555555554 33 233555556666665554433 2234444555555555443
No 123
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.63 E-value=4.2e-16 Score=122.68 Aligned_cols=134 Identities=20% Similarity=0.267 Sum_probs=101.5
Q ss_pred ccCCCCCccEEEccCCCCCCCCCccCCCCC-CCCeeeccCCcCCCccchhccCCCCCcEEECCCCCCCCCcCCCchh-cc
Q 038615 96 NFSCFPNLQYLNLWNNNLSGSIPPQIGSLS-NLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPRE-IG 173 (274)
Q Consensus 96 ~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~lp~~-l~ 173 (274)
.+...++|++|++++|.++. ++. +..+. +|++|++++|.+++. ..+..+++|++|++++|.++ .+|+. +.
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~----~~~~~~~~ 85 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC----RIGEGLDQ 85 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC----EECSCHHH
T ss_pred hcCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc----ccCcchhh
Confidence 45667788888888888873 444 44444 888888888888854 56778888888888888884 23433 47
Q ss_pred CCcccceeecccccCCCCCch--hhcCCCCCCeeecccCcCCCCCch----hccCCCCCCEEEccCCccCcc
Q 038615 174 NLKNLTHLSLITNKRTGAIPS--TLGHLTSLLYLDLSSNQLHSFIPL----EIGNFSALEELDLSDNKIRAL 239 (274)
Q Consensus 174 ~l~~L~~L~l~~n~l~~~~p~--~l~~l~~L~~L~ls~N~l~~~~p~----~l~~l~~L~~L~l~~N~l~~~ 239 (274)
.+++|++|++++|.+. .+|. .+..+++|++|++++|.++. +|. .+..+++|+.||+++|.+...
T Consensus 86 ~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~~~ 155 (176)
T 1a9n_A 86 ALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLKER 155 (176)
T ss_dssp HCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHHHH
T ss_pred cCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHHHH
Confidence 7888888888888885 4454 67888889999999998875 454 378889999999998887653
No 124
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.61 E-value=4.4e-15 Score=129.45 Aligned_cols=159 Identities=21% Similarity=0.255 Sum_probs=113.2
Q ss_pred CCCEEEEEecCCCcccccCccccCCCCCccE-EEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccch----------
Q 038615 75 KGSITHIELVECSIKGELGSLNFSCFPNLQY-LNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPT---------- 143 (274)
Q Consensus 75 ~~~l~~L~l~~~~l~~~l~~~~l~~l~~L~~-L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~---------- 143 (274)
..+++.|++++|.+.+.++...|.++++++. +.+.+|++....|..|..+++|++|++++|.++...+.
T Consensus 53 l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~ 132 (350)
T 4ay9_X 53 FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVL 132 (350)
T ss_dssp CTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEE
T ss_pred CCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhh
Confidence 3578999999998876777657788877665 55667888866677788888888888888877633221
Q ss_pred ---------------hccCC-CCCcEEECCCCCCCCCcCCCchhccCCcccceeecccccCCCCCc-hhhcCCCCCCeee
Q 038615 144 ---------------EIGIF-RNLEELYLPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIP-STLGHLTSLLYLD 206 (274)
Q Consensus 144 ---------------~~~~l-~~L~~L~L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~ 206 (274)
.+..+ ..++.|++++|+++ .+|.......+|+.+++.+++..+.+| ..|..+++|++|+
T Consensus 133 l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~----~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~Ld 208 (350)
T 4ay9_X 133 LDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ----EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILD 208 (350)
T ss_dssp EEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC----EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEE
T ss_pred hhhccccccccccccchhhcchhhhhhcccccccc----CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhh
Confidence 12222 35788889999885 455666667889999998654444555 5678999999999
Q ss_pred cccCcCCCCCchhccCCCCCCEEEccCC-ccCccc
Q 038615 207 LSSNQLHSFIPLEIGNFSALEELDLSDN-KIRALQ 240 (274)
Q Consensus 207 ls~N~l~~~~p~~l~~l~~L~~L~l~~N-~l~~~~ 240 (274)
+++|+++...+.. +.+|+.|.+.++ .++..+
T Consensus 209 Ls~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP 240 (350)
T 4ay9_X 209 ISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP 240 (350)
T ss_dssp CTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC
T ss_pred cCCCCcCccChhh---hccchHhhhccCCCcCcCC
Confidence 9999999754444 456666665444 455554
No 125
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.59 E-value=1.7e-18 Score=139.05 Aligned_cols=133 Identities=26% Similarity=0.304 Sum_probs=87.1
Q ss_pred ccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEECCCCCCCCCcCCCchhccCC
Q 038615 96 NFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNL 175 (274)
Q Consensus 96 ~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~lp~~l~~l 175 (274)
.+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..+..+++|++|++++|.++. +| .+..+
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~----l~-~~~~l 114 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS----LS-GIEKL 114 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC----HH-HHHHH
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc----CC-ccccC
Confidence 46667777777777777764 55 6666777777777777776 566666666777777777777742 33 46666
Q ss_pred cccceeecccccCCCCCc-hhhcCCCCCCeeecccCcCCCCCch----------hccCCCCCCEEEccCCccCc
Q 038615 176 KNLTHLSLITNKRTGAIP-STLGHLTSLLYLDLSSNQLHSFIPL----------EIGNFSALEELDLSDNKIRA 238 (274)
Q Consensus 176 ~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~ls~N~l~~~~p~----------~l~~l~~L~~L~l~~N~l~~ 238 (274)
++|++|++++|.+.+..+ ..+..+++|++|++++|.+++.+|. .+..+++|+.|| +|.++.
T Consensus 115 ~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 777777777777764222 3566677777777777777655443 256667777665 555554
No 126
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.59 E-value=4.1e-15 Score=116.95 Aligned_cols=130 Identities=18% Similarity=0.199 Sum_probs=108.6
Q ss_pred CCCEEEEEecCCCcccccCccccCCC-CCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcE
Q 038615 75 KGSITHIELVECSIKGELGSLNFSCF-PNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEE 153 (274)
Q Consensus 75 ~~~l~~L~l~~~~l~~~l~~~~l~~l-~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 153 (274)
...++.|++++|++. .++. +..+ ++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 18 ~~~L~~L~l~~n~l~-~i~~--~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 18 AVRDRELDLRGYKIP-VIEN--LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp TTSCEEEECTTSCCC-SCCC--GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred cCCceEEEeeCCCCc-hhHH--hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 347899999999998 5544 4444 4999999999999864 67899999999999999999554455589999999
Q ss_pred EECCCCCCCCCcCCCch--hccCCcccceeecccccCCCCCch----hhcCCCCCCeeecccCcCCC
Q 038615 154 LYLPSNKLNGFNGTIPR--EIGNLKNLTHLSLITNKRTGAIPS----TLGHLTSLLYLDLSSNQLHS 214 (274)
Q Consensus 154 L~L~~n~l~~~~~~lp~--~l~~l~~L~~L~l~~n~l~~~~p~----~l~~l~~L~~L~ls~N~l~~ 214 (274)
|++++|.++ .+|. .+..+++|++|++++|.+.. +|. .+..+++|+.|++++|.+..
T Consensus 93 L~L~~N~i~----~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 93 LILTNNSLV----ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp EECCSCCCC----CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred EECCCCcCC----cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 999999995 3454 68899999999999999984 455 48899999999999998654
No 127
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.58 E-value=3.8e-17 Score=147.19 Aligned_cols=38 Identities=26% Similarity=0.249 Sum_probs=16.7
Q ss_pred CCCCCeeeccCCcCCCc----cchhccCCCCCcEEECCCCCC
Q 038615 124 LSNLKYLNLRWNNLTGT----IPTEIGIFRNLEELYLPSNKL 161 (274)
Q Consensus 124 l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l 161 (274)
+++|++|++++|.+++. ++..+..+++|++|++++|.+
T Consensus 255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 296 (461)
T 1z7x_W 255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL 296 (461)
T ss_dssp TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCC
T ss_pred CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCC
Confidence 34444444444444422 233333444444444444444
No 128
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.58 E-value=7.6e-15 Score=135.78 Aligned_cols=122 Identities=22% Similarity=0.289 Sum_probs=108.5
Q ss_pred CccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEECCCCCCCCCcCCCchhccCCccccee
Q 038615 102 NLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHL 181 (274)
Q Consensus 102 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~lp~~l~~l~~L~~L 181 (274)
.|+.|++++|.+++ +|. +..+++|++|+|++|.++ .+|..++.+++|++|++++|.++ .+| .+..+++|+.|
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~----~lp-~l~~l~~L~~L 513 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE----NVD-GVANLPRLQEL 513 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC----CCG-GGTTCSSCCEE
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC----CCc-ccCCCCCCcEE
Confidence 57889999999985 676 999999999999999999 88999999999999999999995 266 79999999999
Q ss_pred ecccccCCCCC-chhhcCCCCCCeeecccCcCCCCCch---hccCCCCCCEEEc
Q 038615 182 SLITNKRTGAI-PSTLGHLTSLLYLDLSSNQLHSFIPL---EIGNFSALEELDL 231 (274)
Q Consensus 182 ~l~~n~l~~~~-p~~l~~l~~L~~L~ls~N~l~~~~p~---~l~~l~~L~~L~l 231 (274)
++++|.+++.. |..++.+++|+.|++++|.+++..|. .+..+++|+.|++
T Consensus 514 ~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 514 LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp ECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred ECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 99999999887 99999999999999999999986542 2345789999874
No 129
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.57 E-value=1.8e-14 Score=112.82 Aligned_cols=106 Identities=25% Similarity=0.226 Sum_probs=55.8
Q ss_pred ccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEECCCCCCCCCcCCCchhccCCcccceee
Q 038615 103 LQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHLS 182 (274)
Q Consensus 103 L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~lp~~l~~l~~L~~L~ 182 (274)
.+.+++++|.++ .+|..+. ++|++|+|++|.+++..|..+..+++|++|++++|+++. ..+..+..+++|++|+
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~---l~~~~f~~l~~L~~L~ 84 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTV---LPAGVFDKLTQLTQLS 84 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCC---CCTTTTTTCTTCCEEE
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCc---cChhhccCCCCCCEEE
Confidence 345666666665 3444332 556666666666665545555556666666666665531 1122234555555555
Q ss_pred cccccCCCCCchhhcCCCCCCeeecccCcCCC
Q 038615 183 LITNKRTGAIPSTLGHLTSLLYLDLSSNQLHS 214 (274)
Q Consensus 183 l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 214 (274)
+++|++++..+..+..+++|++|++++|.++.
T Consensus 85 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 85 LNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CCCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 55555554444445555555555555555544
No 130
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.56 E-value=1.3e-17 Score=133.94 Aligned_cols=136 Identities=23% Similarity=0.241 Sum_probs=113.6
Q ss_pred CCCCCccEEEccCCCCCCCCCc------cCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEECCCCCCCCCcCCCchh
Q 038615 98 SCFPNLQYLNLWNNNLSGSIPP------QIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPRE 171 (274)
Q Consensus 98 ~~l~~L~~L~l~~n~l~~~~p~------~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~lp~~ 171 (274)
.....++.++++.+.+.+..|. .+..+++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~----~l~~~ 88 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK----KIENL 88 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC----SCSSH
T ss_pred HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc----cccch
Confidence 3345566666666666666665 78899999999999999995 67 8889999999999999995 56777
Q ss_pred ccCCcccceeecccccCCCCCchhhcCCCCCCeeecccCcCCCCCc-hhccCCCCCCEEEccCCccCcccc
Q 038615 172 IGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIP-LEIGNFSALEELDLSDNKIRALQI 241 (274)
Q Consensus 172 l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p-~~l~~l~~L~~L~l~~N~l~~~~~ 241 (274)
+..+++|++|++++|.+++ +| .+..+++|++|++++|.+++..+ ..+..+++|++|++++|++++..+
T Consensus 89 ~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 89 DAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp HHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred hhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 7788999999999999986 44 68889999999999999987432 578999999999999999987743
No 131
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.55 E-value=3.6e-14 Score=111.51 Aligned_cols=104 Identities=31% Similarity=0.376 Sum_probs=61.1
Q ss_pred cEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEECCCCCCCCCcCCCch-hccCCcccceee
Q 038615 104 QYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPR-EIGNLKNLTHLS 182 (274)
Q Consensus 104 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~lp~-~l~~l~~L~~L~ 182 (274)
+.+++++|.++ .+|..+. ++|++|+|++|.+++..|..+..+++|++|++++|+++. +|. .+..+++|++|+
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~----i~~~~~~~l~~L~~L~ 87 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA----IPTGVFDKLTQLTQLD 87 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC----CCTTTTTTCTTCCEEE
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc----cChhHhCCcchhhEEE
Confidence 45666666664 4555443 566666666666665556666666666666666666632 222 245556666666
Q ss_pred cccccCCCCCchhhcCCCCCCeeecccCcCCC
Q 038615 183 LITNKRTGAIPSTLGHLTSLLYLDLSSNQLHS 214 (274)
Q Consensus 183 l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 214 (274)
+++|.+.+..+..+..+++|++|++++|.+..
T Consensus 88 L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 88 LNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred CCCCccceeCHHHhccccCCCEEEeCCCCccc
Confidence 66666654444445555666666666666554
No 132
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.54 E-value=6.1e-14 Score=109.69 Aligned_cols=105 Identities=26% Similarity=0.300 Sum_probs=66.2
Q ss_pred EEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEECCCC
Q 038615 80 HIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSN 159 (274)
Q Consensus 80 ~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 159 (274)
.++++++++. .+|. .+ .++|++|++++|.+++..|..|..+++|++|+|++|++++..+..+..+++|++|++++|
T Consensus 13 ~l~~s~n~l~-~ip~-~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 13 TVDCSGKSLA-SVPT-GI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp EEECTTSCCS-SCCS-CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcC-ccCc-cC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 4555566665 4554 33 266777777777777666666677777777777777777554455666777777777777
Q ss_pred CCCCCcCCCchhccCCcccceeecccccCCCC
Q 038615 160 KLNGFNGTIPREIGNLKNLTHLSLITNKRTGA 191 (274)
Q Consensus 160 ~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~ 191 (274)
+++. ..+..+..+++|++|++++|.+...
T Consensus 89 ~l~~---~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 89 QLKS---IPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CCCC---CCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred ccCE---eCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 7642 2223466667777777777766543
No 133
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.52 E-value=3.2e-16 Score=141.13 Aligned_cols=164 Identities=19% Similarity=0.158 Sum_probs=126.1
Q ss_pred CCEEEEEecCCCcccc----cCccccCCCCCccEEEccCCCCCCC----CCccCCCCCCCCeeeccCCcCCCccchhcc-
Q 038615 76 GSITHIELVECSIKGE----LGSLNFSCFPNLQYLNLWNNNLSGS----IPPQIGSLSNLKYLNLRWNNLTGTIPTEIG- 146 (274)
Q Consensus 76 ~~l~~L~l~~~~l~~~----l~~~~l~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~- 146 (274)
.+++.|++++|.+.+. +....+..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+.
T Consensus 227 ~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~ 306 (461)
T 1z7x_W 227 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCE 306 (461)
T ss_dssp TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred CCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHH
Confidence 4678888888877642 1121334678999999999988753 566677789999999999999754443333
Q ss_pred ----CCCCCcEEECCCCCCCCCc-CCCchhccCCcccceeecccccCCCCCchhhcC-----CCCCCeeecccCcCCC--
Q 038615 147 ----IFRNLEELYLPSNKLNGFN-GTIPREIGNLKNLTHLSLITNKRTGAIPSTLGH-----LTSLLYLDLSSNQLHS-- 214 (274)
Q Consensus 147 ----~l~~L~~L~L~~n~l~~~~-~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~-----l~~L~~L~ls~N~l~~-- 214 (274)
..++|++|++++|.++... ..++..+..+++|++|++++|.+.+..+..+.. .++|++|++++|.+++
T Consensus 307 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~ 386 (461)
T 1z7x_W 307 TLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSS 386 (461)
T ss_dssp HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHH
T ss_pred HhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhh
Confidence 2369999999999985211 125666778899999999999987654444432 6799999999999996
Q ss_pred --CCchhccCCCCCCEEEccCCccCcc
Q 038615 215 --FIPLEIGNFSALEELDLSDNKIRAL 239 (274)
Q Consensus 215 --~~p~~l~~l~~L~~L~l~~N~l~~~ 239 (274)
.+|..+..+++|++|++++|++++.
T Consensus 387 ~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 387 CSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp HHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred HHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 6788888999999999999999875
No 134
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.51 E-value=1.8e-13 Score=107.52 Aligned_cols=104 Identities=29% Similarity=0.345 Sum_probs=72.5
Q ss_pred EEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEECCC
Q 038615 79 THIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPS 158 (274)
Q Consensus 79 ~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 158 (274)
+.++++++++. .+|. .+. ++|++|++++|.+++..|..|..+++|++|+|++|.+++..+..+..+++|++|++++
T Consensus 15 ~~l~~~~n~l~-~iP~-~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPA-GIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCS-CCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCC-CcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 45777777775 5665 333 6777788888877766677777777788888888877754444467777788888887
Q ss_pred CCCCCCcCCCch-hccCCcccceeecccccCCC
Q 038615 159 NKLNGFNGTIPR-EIGNLKNLTHLSLITNKRTG 190 (274)
Q Consensus 159 n~l~~~~~~lp~-~l~~l~~L~~L~l~~n~l~~ 190 (274)
|+++ .+|. .+..+++|++|++++|.+..
T Consensus 91 N~l~----~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 91 NHLK----SIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp SCCC----CCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred Cccc----eeCHHHhccccCCCEEEeCCCCccc
Confidence 7774 2333 36777777788887777764
No 135
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.40 E-value=6.1e-15 Score=129.64 Aligned_cols=164 Identities=17% Similarity=0.171 Sum_probs=120.0
Q ss_pred CCEEEEEecCCCcccc----cCccccC-CCCCccEEEccCCCCCCCCCccC-CCCCCCCeeeccCCcCCCccchhc----
Q 038615 76 GSITHIELVECSIKGE----LGSLNFS-CFPNLQYLNLWNNNLSGSIPPQI-GSLSNLKYLNLRWNNLTGTIPTEI---- 145 (274)
Q Consensus 76 ~~l~~L~l~~~~l~~~----l~~~~l~-~l~~L~~L~l~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~~---- 145 (274)
..++.|++++|.++.. +.. .+. ..++|++|++++|.++......+ ..+++|++|+|++|.+++.....+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~-~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAA-VLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHH-HHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHH-HHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4788999999998743 222 222 33789999999999874322222 345689999999999985433333
Q ss_pred -cCCCCCcEEECCCCCCCCCc-CCCchhccCCcccceeecccccCCCC----CchhhcCCCCCCeeecccCcCCCC----
Q 038615 146 -GIFRNLEELYLPSNKLNGFN-GTIPREIGNLKNLTHLSLITNKRTGA----IPSTLGHLTSLLYLDLSSNQLHSF---- 215 (274)
Q Consensus 146 -~~l~~L~~L~L~~n~l~~~~-~~lp~~l~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~ls~N~l~~~---- 215 (274)
...++|++|++++|.++... ..++..+...++|++|++++|.+... ++..+...++|+.|++++|.+++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 35688999999999985211 12444557788999999999998753 345667788999999999999864
Q ss_pred CchhccCCCCCCEEEccCCccCccc
Q 038615 216 IPLEIGNFSALEELDLSDNKIRALQ 240 (274)
Q Consensus 216 ~p~~l~~l~~L~~L~l~~N~l~~~~ 240 (274)
++..+...++|++|+|++|.|++..
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g 255 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEG 255 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHH
Confidence 3445566789999999999997653
No 136
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.38 E-value=1.8e-12 Score=112.45 Aligned_cols=104 Identities=23% Similarity=0.177 Sum_probs=72.5
Q ss_pred EEEccCC-CCCCCCCccCCCCCCCCeeeccC-CcCCCccchhccCCCCCcEEECCCCCCCCCcCCCchhccCCcccceee
Q 038615 105 YLNLWNN-NLSGSIPPQIGSLSNLKYLNLRW-NNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHLS 182 (274)
Q Consensus 105 ~L~l~~n-~l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~lp~~l~~l~~L~~L~ 182 (274)
.++.+++ .++ .+|. +..+++|++|+|++ |.+++..+..|+.+++|++|+|++|++ .+..|..+.++++|+.|+
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l---~~~~~~~~~~l~~L~~L~ 86 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL---RFVAPDAFHFTPRLSRLN 86 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCC---CEECTTGGGSCSCCCEEE
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCcc---ceeCHHHhcCCcCCCEEe
Confidence 4567776 676 4666 77777788888875 777766556777777788888887777 344455667777777777
Q ss_pred cccccCCCCCchhhcCCCCCCeeecccCcCCC
Q 038615 183 LITNKRTGAIPSTLGHLTSLLYLDLSSNQLHS 214 (274)
Q Consensus 183 l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~ 214 (274)
|++|.+++..+..+..++ |+.|++++|.+..
T Consensus 87 l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 87 LSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp CCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 777777765555555444 7777777777764
No 137
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.33 E-value=5.6e-12 Score=109.38 Aligned_cols=108 Identities=21% Similarity=0.242 Sum_probs=89.3
Q ss_pred cccceeeeCCCCCEEEEEecCC-CcccccCccccCCCCCccEEEccC-CCCCCCCCccCCCCCCCCeeeccCCcCCCccc
Q 038615 65 CNWVGITCDYKGSITHIELVEC-SIKGELGSLNFSCFPNLQYLNLWN-NNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIP 142 (274)
Q Consensus 65 c~w~gv~c~~~~~l~~L~l~~~-~l~~~l~~~~l~~l~~L~~L~l~~-n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p 142 (274)
|.|..|.|. ++ ++. .+|. +..+++|++|+|++ |.+++..+..|..+++|++|+|++|.+++..|
T Consensus 8 C~~~~v~~~-----------~~n~l~-~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 73 (347)
T 2ifg_A 8 HGSSGLRCT-----------RDGALD-SLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP 73 (347)
T ss_dssp SSSSCEECC-----------SSCCCT-TTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECT
T ss_pred ccCCEEEcC-----------CCCCCC-ccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCH
Confidence 666666664 44 566 4666 88899999999996 99998777889999999999999999998888
Q ss_pred hhccCCCCCcEEECCCCCCCCCcCCCch-hccCCcccceeecccccCCCC
Q 038615 143 TEIGIFRNLEELYLPSNKLNGFNGTIPR-EIGNLKNLTHLSLITNKRTGA 191 (274)
Q Consensus 143 ~~~~~l~~L~~L~L~~n~l~~~~~~lp~-~l~~l~~L~~L~l~~n~l~~~ 191 (274)
..|..+++|++|+|++|+++. +|. .+..++ |+.|++.+|.+...
T Consensus 74 ~~~~~l~~L~~L~l~~N~l~~----~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 74 DAFHFTPRLSRLNLSFNALES----LSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp TGGGSCSCCCEEECCSSCCSC----CCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred HHhcCCcCCCEEeCCCCccce----eCHHHcccCC-ceEEEeeCCCccCC
Confidence 899999999999999999953 343 344454 99999999998753
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.31 E-value=4.6e-12 Score=109.31 Aligned_cols=182 Identities=18% Similarity=0.175 Sum_probs=99.9
Q ss_pred CCEEEEEecCCCccc-------------------ccCccccCC--------CCCccEEEccCCCCCCCCCccCCCCCCCC
Q 038615 76 GSITHIELVECSIKG-------------------ELGSLNFSC--------FPNLQYLNLWNNNLSGSIPPQIGSLSNLK 128 (274)
Q Consensus 76 ~~l~~L~l~~~~l~~-------------------~l~~~~l~~--------l~~L~~L~l~~n~l~~~~p~~l~~l~~L~ 128 (274)
.+++.|+|++|.+.. .++...|.+ +++|+.|++.+ .++..-+..|..+++|+
T Consensus 49 ~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~ 127 (329)
T 3sb4_A 49 PSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLK 127 (329)
T ss_dssp TTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCC
T ss_pred ccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccc
Confidence 467777777776650 234445666 77888888877 66644455677788888
Q ss_pred eeeccCCcCCCccchhccCCCCCcEEECCCCCC----CCCc-------------------CCCchhc-------------
Q 038615 129 YLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKL----NGFN-------------------GTIPREI------------- 172 (274)
Q Consensus 129 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l----~~~~-------------------~~lp~~l------------- 172 (274)
++++++|.++...+..|..+.++..+....+.. ..+. +.++..+
T Consensus 128 ~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l 207 (329)
T 3sb4_A 128 ICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFL 207 (329)
T ss_dssp EEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEE
T ss_pred eEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceE
Confidence 888887776644444455555555554433110 0000 0000000
Q ss_pred ---------------cCCcccceeecccccCCCCCchhhcCCCCCCeeecccCcCCCCCchhccCCCCCC-EEEccCCcc
Q 038615 173 ---------------GNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALE-ELDLSDNKI 236 (274)
Q Consensus 173 ---------------~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~-~L~l~~N~l 236 (274)
..+++|+.+++++|+++......|..+++|+.+++.+| ++...+.+|.++++|+ .+++.+ .+
T Consensus 208 ~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l 285 (329)
T 3sb4_A 208 TIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SV 285 (329)
T ss_dssp EEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TC
T ss_pred EEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cc
Confidence 02456666666666666555556666666666666666 5554455666666666 666666 55
Q ss_pred CcccccCccccccccCCccCCccc
Q 038615 237 RALQIIQPSISQSFIKPTFRPNTF 260 (274)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~ 260 (274)
+.+....+.--..+..+++.+|.+
T Consensus 286 ~~I~~~aF~~c~~L~~l~l~~n~i 309 (329)
T 3sb4_A 286 TAIEFGAFMGCDNLRYVLATGDKI 309 (329)
T ss_dssp CEECTTTTTTCTTEEEEEECSSCC
T ss_pred eEEchhhhhCCccCCEEEeCCCcc
Confidence 554433333333444444444433
No 139
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.24 E-value=1.2e-13 Score=121.39 Aligned_cols=163 Identities=19% Similarity=0.144 Sum_probs=116.0
Q ss_pred CCCccEEEccCCCCCCCCCccC----C-CCCCCCeeeccCCcCCCccchhc-cCCCCCcEEECCCCCCCCCcC-CCchhc
Q 038615 100 FPNLQYLNLWNNNLSGSIPPQI----G-SLSNLKYLNLRWNNLTGTIPTEI-GIFRNLEELYLPSNKLNGFNG-TIPREI 172 (274)
Q Consensus 100 l~~L~~L~l~~n~l~~~~p~~l----~-~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~L~~n~l~~~~~-~lp~~l 172 (274)
.++|+.|++++|.++......+ . ..++|++|+|++|.++......+ ..+++|++|++++|.++.... .+...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4678999999999875433222 2 23689999999999975433332 345689999999999952110 111122
Q ss_pred -cCCcccceeecccccCCC----CCchhhcCCCCCCeeecccCcCCCC----CchhccCCCCCCEEEccCCccCcccccC
Q 038615 173 -GNLKNLTHLSLITNKRTG----AIPSTLGHLTSLLYLDLSSNQLHSF----IPLEIGNFSALEELDLSDNKIRALQIIQ 243 (274)
Q Consensus 173 -~~l~~L~~L~l~~n~l~~----~~p~~l~~l~~L~~L~ls~N~l~~~----~p~~l~~l~~L~~L~l~~N~l~~~~~~~ 243 (274)
...++|++|++++|.++. .++..+...++|++|++++|.+++. ++..+...++|++|+|++|.|++.....
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 346789999999999865 2445557889999999999999753 3566778889999999999998653211
Q ss_pred --cc--ccccccCCccCCccccC
Q 038615 244 --PS--ISQSFIKPTFRPNTFCN 262 (274)
Q Consensus 244 --~~--~~~~~~~~~~~~~~~~~ 262 (274)
.. ....+..+++++|.|..
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHhCCCCCEEeccCCCCCH
Confidence 11 12467888899998764
No 140
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.21 E-value=5.5e-13 Score=123.59 Aligned_cols=65 Identities=11% Similarity=0.042 Sum_probs=36.2
Q ss_pred CcccceeecccccCCC-CCchhhcCCCCCCeeecccCcCCCC-CchhccCCCCCCEEEccCCccCcc
Q 038615 175 LKNLTHLSLITNKRTG-AIPSTLGHLTSLLYLDLSSNQLHSF-IPLEIGNFSALEELDLSDNKIRAL 239 (274)
Q Consensus 175 l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~L~ls~N~l~~~-~p~~l~~l~~L~~L~l~~N~l~~~ 239 (274)
+++|++|++++|.+++ .++..+..+++|++|++++|.+++. ++..+..+++|++|++++|++++.
T Consensus 462 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp CTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred CccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 4556666666665554 2233345556666666666665533 233334556666666666666543
No 141
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.16 E-value=1.2e-10 Score=100.28 Aligned_cols=162 Identities=16% Similarity=0.167 Sum_probs=122.0
Q ss_pred CCEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcC-------C----------
Q 038615 76 GSITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNL-------T---------- 138 (274)
Q Consensus 76 ~~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l-------~---------- 138 (274)
.+++.|++.+ ++. .++...|..+++|+.+++++|.+....+..|..+.++.++.+..+.. .
T Consensus 101 ~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L 178 (329)
T 3sb4_A 101 QTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL 178 (329)
T ss_dssp TTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred CCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence 4788899988 777 66666899999999999999998755666777777777666554211 0
Q ss_pred ---------Cccchh---------------------------c-cCCCCCcEEECCCCCCCCCcCCCchhccCCccccee
Q 038615 139 ---------GTIPTE---------------------------I-GIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHL 181 (274)
Q Consensus 139 ---------~~~p~~---------------------------~-~~l~~L~~L~L~~n~l~~~~~~lp~~l~~l~~L~~L 181 (274)
+.++.. + ..+++|+.+++++|+++.+. +..|.++++|+.+
T Consensus 179 ~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~---~~aF~~~~~L~~l 255 (329)
T 3sb4_A 179 ETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIP---DFTFAQKKYLLKI 255 (329)
T ss_dssp EEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEEC---TTTTTTCTTCCEE
T ss_pred ceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceec---HhhhhCCCCCCEE
Confidence 000000 0 12789999999999886433 2458899999999
Q ss_pred ecccccCCCCCchhhcCCCCCC-eeecccCcCCCCCchhccCCCCCCEEEccCCccCcccccCc
Q 038615 182 SLITNKRTGAIPSTLGHLTSLL-YLDLSSNQLHSFIPLEIGNFSALEELDLSDNKIRALQIIQP 244 (274)
Q Consensus 182 ~l~~n~l~~~~p~~l~~l~~L~-~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~ 244 (274)
++.+| +...-+.+|.++++|+ .+++.+ .++...+.+|.++++|+.++++.|+++.+....+
T Consensus 256 ~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF 317 (329)
T 3sb4_A 256 KLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELF 317 (329)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTT
T ss_pred ECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhh
Confidence 99998 7666677889999999 999988 7777667899999999999999999988765433
No 142
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.15 E-value=3.3e-12 Score=118.33 Aligned_cols=151 Identities=16% Similarity=0.113 Sum_probs=79.7
Q ss_pred CEEEEEecCCCc-cc-ccCccccCCCCCccEEEccCCCCCCC----CCccCCCCCCCCeeeccCCcCCC----ccchhcc
Q 038615 77 SITHIELVECSI-KG-ELGSLNFSCFPNLQYLNLWNNNLSGS----IPPQIGSLSNLKYLNLRWNNLTG----TIPTEIG 146 (274)
Q Consensus 77 ~l~~L~l~~~~l-~~-~l~~~~l~~l~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~----~~p~~~~ 146 (274)
++++|++++|.- .. .++. ....+++|++|++++|.+++. ++..+..+++|++|++++|.+++ .++..+.
T Consensus 139 ~L~~L~L~~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~ 217 (592)
T 3ogk_B 139 DLETLKLDKCSGFTTDGLLS-IVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIAR 217 (592)
T ss_dssp GCCEEEEESCEEEEHHHHHH-HHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHH
T ss_pred cCcEEECcCCCCcCHHHHHH-HHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHh
Confidence 377888877752 11 1222 234567777777777776544 22233456677777777777652 2334445
Q ss_pred CCCCCcEEECCCCCCCCCcCCCchhccCCcccceeeccccc--------------------------CCCCCchhhcCCC
Q 038615 147 IFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHLSLITNK--------------------------RTGAIPSTLGHLT 200 (274)
Q Consensus 147 ~l~~L~~L~L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~--------------------------l~~~~p~~l~~l~ 200 (274)
.+++|++|++++|.+. .+|..+..+++|++|+++... ..+.+|..+..++
T Consensus 218 ~~~~L~~L~L~~~~~~----~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~ 293 (592)
T 3ogk_B 218 NCRSLVSVKVGDFEIL----ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAA 293 (592)
T ss_dssp HCTTCCEEECSSCBGG----GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGG
T ss_pred hCCCCcEEeccCccHH----HHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcC
Confidence 6677777777776652 133334444444444443211 1123344444555
Q ss_pred CCCeeecccCcCCCCCc-hhccCCCCCCEEEcc
Q 038615 201 SLLYLDLSSNQLHSFIP-LEIGNFSALEELDLS 232 (274)
Q Consensus 201 ~L~~L~ls~N~l~~~~p-~~l~~l~~L~~L~l~ 232 (274)
+|++|++++|.+++... ..+..+++|++|+++
T Consensus 294 ~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 294 QIRKLDLLYALLETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp GCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred CCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence 66666666665543322 224455555555555
No 143
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=99.05 E-value=8.6e-13 Score=110.16 Aligned_cols=163 Identities=18% Similarity=0.123 Sum_probs=83.6
Q ss_pred CCcccceeeeCCCC-CEEEEEecC---CCcccccCccccCCCCCccEEEccCCCCCCCCC-ccCCCCCCCCe--eeccCC
Q 038615 63 DHCNWVGITCDYKG-SITHIELVE---CSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIP-PQIGSLSNLKY--LNLRWN 135 (274)
Q Consensus 63 ~~c~w~gv~c~~~~-~l~~L~l~~---~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~--L~L~~n 135 (274)
..|.|.|+.|+..+ +|..+...+ ..+.+.+.+..+..+.. .+...++..++.+. ..+...+.|+. ++++.|
T Consensus 76 ~l~~~~g~i~~~~~~ki~~~v~~~~~~~~~~~~l~~~~~~~Lk~--~l~~ryn~~~~~LdLs~l~~dp~L~~~~l~l~~N 153 (267)
T 3rw6_A 76 ALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKL--IMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLN 153 (267)
T ss_dssp HHHHTTSSCBCTTSCBCCCEEEECCCCHHHHTSCCHHHHHHHHH--HHHHTEETTTTEEECTTGGGCHHHHHTTCCCCTT
T ss_pred HHHhcCcEEECCCCCEEEEEEecCCCcccccccCCHHHHHHHHH--HHHhccchhccccCHHHcCCCcchhhcCccccCC
Confidence 46789999998543 555444433 22223333211111111 11122222221111 01223333443 455555
Q ss_pred cCC---CccchhccCCCCCcEEECCCCCCCCCcCCCchhccCCcccceeecccccCCCCCchhhcCCC--CCCeeecccC
Q 038615 136 NLT---GTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLT--SLLYLDLSSN 210 (274)
Q Consensus 136 ~l~---~~~p~~~~~l~~L~~L~L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~--~L~~L~ls~N 210 (274)
... ..++.....+++|+.|+|++|+++.+. .+|..+..+++|+.|+|++|.+.+. ..+..+. +|++|++++|
T Consensus 154 ~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~-~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~N 230 (267)
T 3rw6_A 154 RRSCMAATLRIIEENIPELLSLNLSNNRLYRLD-DMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGN 230 (267)
T ss_dssp SHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCG-GGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTS
T ss_pred HHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCc-cchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCC
Confidence 332 111112245677888888888875432 3445556677777777777777654 2233333 7777777777
Q ss_pred cCCCCCc-------hhccCCCCCCEEE
Q 038615 211 QLHSFIP-------LEIGNFSALEELD 230 (274)
Q Consensus 211 ~l~~~~p-------~~l~~l~~L~~L~ 230 (274)
.+.+.+| ..+..+++|+.||
T Consensus 231 pl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 231 SLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp TTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred cCccccCcchhHHHHHHHHCcccCeEC
Confidence 7776544 2355677777665
No 144
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.03 E-value=3.3e-12 Score=118.36 Aligned_cols=113 Identities=15% Similarity=0.092 Sum_probs=53.5
Q ss_pred CCCCCeeeccCCcCCCccchhcc-CCCCCcEEECC--C----CCCCCCc--CCCchhccCCcccceeecccccCCCCCch
Q 038615 124 LSNLKYLNLRWNNLTGTIPTEIG-IFRNLEELYLP--S----NKLNGFN--GTIPREIGNLKNLTHLSLITNKRTGAIPS 194 (274)
Q Consensus 124 l~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~L~--~----n~l~~~~--~~lp~~l~~l~~L~~L~l~~n~l~~~~p~ 194 (274)
+++|++|.+..|.+++.....+. .+++|+.|+++ + +.++... ..++..+..+++|+.|++++ .+++..+.
T Consensus 371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~ 449 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFE 449 (594)
T ss_dssp CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHH
T ss_pred chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHH
Confidence 44555555555555433333332 35666666666 2 3332100 01112234445555555544 33333223
Q ss_pred hhcC-CCCCCeeecccCcCCCCCchhc-cCCCCCCEEEccCCccC
Q 038615 195 TLGH-LTSLLYLDLSSNQLHSFIPLEI-GNFSALEELDLSDNKIR 237 (274)
Q Consensus 195 ~l~~-l~~L~~L~ls~N~l~~~~p~~l-~~l~~L~~L~l~~N~l~ 237 (274)
.+.. +++|++|++++|.+++..+..+ ..+++|++|++++|+++
T Consensus 450 ~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~ 494 (594)
T 2p1m_B 450 YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFG 494 (594)
T ss_dssp HHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCC
T ss_pred HHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCc
Confidence 3332 5556666666666654333333 44566666666666664
No 145
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.02 E-value=1.7e-11 Score=113.55 Aligned_cols=109 Identities=18% Similarity=0.217 Sum_probs=55.4
Q ss_pred CCEEEEEecCCCcccccCccccC-CCCCccEEEccCC-CCCCC-CCccCCCCCCCCeeeccCCcCCCccchhc----cCC
Q 038615 76 GSITHIELVECSIKGELGSLNFS-CFPNLQYLNLWNN-NLSGS-IPPQIGSLSNLKYLNLRWNNLTGTIPTEI----GIF 148 (274)
Q Consensus 76 ~~l~~L~l~~~~l~~~l~~~~l~-~l~~L~~L~l~~n-~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~p~~~----~~l 148 (274)
.++++|+++++.+.+.... .+. .+++|++|++++| .++.. ++..+..+++|++|++++|.+++..+..+ ..+
T Consensus 105 ~~L~~L~L~~~~~~~~~~~-~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLE-LIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp TTCCEEEEESCBCCHHHHH-HHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCCeEEeeCcEEcHHHHH-HHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 4677777777776644333 332 4666777777666 33321 22223356666666666666554333222 244
Q ss_pred CCCcEEECCCCCCCCCc-CCCchhccCCcccceeecccc
Q 038615 149 RNLEELYLPSNKLNGFN-GTIPREIGNLKNLTHLSLITN 186 (274)
Q Consensus 149 ~~L~~L~L~~n~l~~~~-~~lp~~l~~l~~L~~L~l~~n 186 (274)
++|++|++++|. ..+. ..++.....+++|++|++++|
T Consensus 184 ~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 184 TSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp CCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 566666666664 1111 111222233455555555554
No 146
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.92 E-value=3.8e-10 Score=98.57 Aligned_cols=160 Identities=18% Similarity=0.178 Sum_probs=106.7
Q ss_pred CCEEEEEecCCCcc---------cccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhcc
Q 038615 76 GSITHIELVECSIK---------GELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIG 146 (274)
Q Consensus 76 ~~l~~L~l~~~~l~---------~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~ 146 (274)
.+++.|.+.+.... +.+.. .+..+++|+.|++++|.-. .++. + .+++|++|++..+.++......+.
T Consensus 139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~-ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~ 214 (362)
T 2ra8_A 139 AHFEGLFWGDIDFEEQEISWIEQVDLSP-VLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDIL 214 (362)
T ss_dssp TTCSEEEECCCCTTTCCGGGCBCCBCHH-HHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHH
T ss_pred chhhheeecCcchhhcccccccccCHHH-HHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHH
Confidence 47888888654321 12333 4567899999999887311 2333 3 378999999998888744333343
Q ss_pred --CCCCCcEEECCC--CCCCCCc--CCCchhc--cCCcccceeecccccCCCCCchhhc---CCCCCCeeecccCcCCCC
Q 038615 147 --IFRNLEELYLPS--NKLNGFN--GTIPREI--GNLKNLTHLSLITNKRTGAIPSTLG---HLTSLLYLDLSSNQLHSF 215 (274)
Q Consensus 147 --~l~~L~~L~L~~--n~l~~~~--~~lp~~l--~~l~~L~~L~l~~n~l~~~~p~~l~---~l~~L~~L~ls~N~l~~~ 215 (274)
.+++|++|+|+. |....-. ..+...+ ..+++|++|++.+|.+....+..+. .+++|++|+++.|.+++.
T Consensus 215 ~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~ 294 (362)
T 2ra8_A 215 GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDE 294 (362)
T ss_dssp HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHH
T ss_pred HccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChH
Confidence 789999999853 2221000 0111222 3578999999999988654333333 468899999999999864
Q ss_pred ----CchhccCCCCCCEEEccCCccCcc
Q 038615 216 ----IPLEIGNFSALEELDLSDNKIRAL 239 (274)
Q Consensus 216 ----~p~~l~~l~~L~~L~l~~N~l~~~ 239 (274)
++..+..+++|+.|++++|.++..
T Consensus 295 G~~~L~~~L~~l~~L~~L~L~~n~i~d~ 322 (362)
T 2ra8_A 295 GARLLLDHVDKIKHLKFINMKYNYLSDE 322 (362)
T ss_dssp HHHHHHTTHHHHTTCSEEECCSBBCCHH
T ss_pred HHHHHHhhcccCCcceEEECCCCcCCHH
Confidence 333445678999999999998754
No 147
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.87 E-value=1.7e-08 Score=89.31 Aligned_cols=175 Identities=12% Similarity=0.127 Sum_probs=86.6
Q ss_pred CEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEEC
Q 038615 77 SITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYL 156 (274)
Q Consensus 77 ~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 156 (274)
.++.+.+.. .+. .+....|.++++|+.+++++|.++......|. ..+|+.+.+..+ ++..-...|..+++|+.+++
T Consensus 158 ~L~~i~lp~-~l~-~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 158 TVQEIVFPS-TLE-QLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp CCCEEECCT-TCC-EECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEEC
T ss_pred CceEEEeCC-Ccc-EehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEec
Confidence 466666664 444 44444677777777777777666532222333 355555555533 33233334555555555555
Q ss_pred CCCCCCCCcC------------------CC-chhccCCcccceeecccccCC-----CCCchhhcCCCCCCeeecccCcC
Q 038615 157 PSNKLNGFNG------------------TI-PREIGNLKNLTHLSLITNKRT-----GAIPSTLGHLTSLLYLDLSSNQL 212 (274)
Q Consensus 157 ~~n~l~~~~~------------------~l-p~~l~~l~~L~~L~l~~n~l~-----~~~p~~l~~l~~L~~L~ls~N~l 212 (274)
..+ ++.+.. .+ ...+.++++|+.+.+.+|... ......|..+++|+.+++. +.+
T Consensus 234 ~~~-l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i 311 (401)
T 4fdw_A 234 PEN-VSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESI 311 (401)
T ss_dssp CTT-CCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTC
T ss_pred CCC-ccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-Cce
Confidence 432 110000 01 223555666666666665543 2233455566666666665 334
Q ss_pred CCCCchhccCCCCCCEEEccCCccCcccccCccccccccCCccCCcc
Q 038615 213 HSFIPLEIGNFSALEELDLSDNKIRALQIIQPSISQSFIKPTFRPNT 259 (274)
Q Consensus 213 ~~~~p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~ 259 (274)
+..-..+|.++++|+.+++..| ++.+....+.-. .+..+.+.+|.
T Consensus 312 ~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 312 RILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp CEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSS
T ss_pred EEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCC
Confidence 4444455666666666666433 444333222222 34444444443
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.83 E-value=6.3e-10 Score=97.16 Aligned_cols=180 Identities=16% Similarity=0.189 Sum_probs=115.7
Q ss_pred CCCEEEEEecCCCccc-c-------cCccccCCCCCccEEEccCCCCC---------CCCCccCCCCCCCCeeeccCCcC
Q 038615 75 KGSITHIELVECSIKG-E-------LGSLNFSCFPNLQYLNLWNNNLS---------GSIPPQIGSLSNLKYLNLRWNNL 137 (274)
Q Consensus 75 ~~~l~~L~l~~~~l~~-~-------l~~~~l~~l~~L~~L~l~~n~l~---------~~~p~~l~~l~~L~~L~L~~n~l 137 (274)
..+|+.|.+......| . +.. ...++++|+.|.+...... +.+...+..+++|+.|++++|.-
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~-s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~ 184 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVE-NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNN 184 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHT-THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBT
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHH-hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCC
Confidence 3467888887665442 1 122 3556889999999765432 12334456789999999998742
Q ss_pred CCccchhccCCCCCcEEECCCCCCCCCcCCCchhc--cCCcccceeeccc--ccCCCC-----Cchhh--cCCCCCCeee
Q 038615 138 TGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREI--GNLKNLTHLSLIT--NKRTGA-----IPSTL--GHLTSLLYLD 206 (274)
Q Consensus 138 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~lp~~l--~~l~~L~~L~l~~--n~l~~~-----~p~~l--~~l~~L~~L~ 206 (274)
. .++. + .+++|+.|++..+.+. ......+ ..+|+|+.|+|+. |...+. +...+ ..+++|++|+
T Consensus 185 l-~l~~-~-~~~~L~~L~L~~~~l~---~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~ 258 (362)
T 2ra8_A 185 L-SIGK-K-PRPNLKSLEIISGGLP---DSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLG 258 (362)
T ss_dssp C-BCCS-C-BCTTCSEEEEECSBCC---HHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEE
T ss_pred c-eecc-c-cCCCCcEEEEecCCCC---hHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEe
Confidence 2 3333 3 3789999999988874 2112223 3689999999863 221111 11222 3578999999
Q ss_pred cccCcCCCCCchhcc---CCCCCCEEEccCCccCcccc--cCc--cccccccCCccCCcccc
Q 038615 207 LSSNQLHSFIPLEIG---NFSALEELDLSDNKIRALQI--IQP--SISQSFIKPTFRPNTFC 261 (274)
Q Consensus 207 ls~N~l~~~~p~~l~---~l~~L~~L~l~~N~l~~~~~--~~~--~~~~~~~~~~~~~~~~~ 261 (274)
+++|.+++..+..+. .+++|++|+|++|.+++... +.. ....++..++++.|.|.
T Consensus 259 L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 259 IVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp EESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 999998754443333 57899999999999987421 111 12345677778777665
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.74 E-value=1.5e-09 Score=85.73 Aligned_cols=117 Identities=15% Similarity=0.113 Sum_probs=61.2
Q ss_pred CCCCCCeeeccCC-cCCCc----cchhccCCCCCcEEECCCCCCCCCc-CCCchhccCCcccceeecccccCCCC----C
Q 038615 123 SLSNLKYLNLRWN-NLTGT----IPTEIGIFRNLEELYLPSNKLNGFN-GTIPREIGNLKNLTHLSLITNKRTGA----I 192 (274)
Q Consensus 123 ~l~~L~~L~L~~n-~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~-~~lp~~l~~l~~L~~L~l~~n~l~~~----~ 192 (274)
..+.|++|+|++| .++.. +...+...++|++|+|++|.++... ..+...+...++|++|++++|.+... +
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l 113 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 113 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence 3344444444444 44321 2223334445555555555553100 01122233344556666666655432 2
Q ss_pred chhhcCCCCCCeeec--ccCcCCCC----CchhccCCCCCCEEEccCCccCcc
Q 038615 193 PSTLGHLTSLLYLDL--SSNQLHSF----IPLEIGNFSALEELDLSDNKIRAL 239 (274)
Q Consensus 193 p~~l~~l~~L~~L~l--s~N~l~~~----~p~~l~~l~~L~~L~l~~N~l~~~ 239 (274)
...+...++|++|++ ++|.++.. +.+.+...++|++|++++|.+...
T Consensus 114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~ 166 (185)
T 1io0_A 114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR 166 (185)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence 344556667888888 77777654 334555667888888888887543
No 150
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.74 E-value=7.3e-08 Score=85.28 Aligned_cols=147 Identities=16% Similarity=0.198 Sum_probs=95.1
Q ss_pred CEEEEEecCCCcccccCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEEC
Q 038615 77 SITHIELVECSIKGELGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYL 156 (274)
Q Consensus 77 ~l~~L~l~~~~l~~~l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 156 (274)
+++.+.+..+ +. .++...|.+ .+|+.+.+.. .++..-...|..+++|+.++++.|.++......|. ..+|+.+.+
T Consensus 136 ~L~~i~l~~~-i~-~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~l 210 (401)
T 4fdw_A 136 QIAKVVLNEG-LK-SIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLL 210 (401)
T ss_dssp CCSEEECCTT-CC-EECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEEC
T ss_pred CccEEEeCCC-cc-EECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEe
Confidence 5777887665 55 565557777 4799999986 66645557789999999999999999843334454 689999999
Q ss_pred CCCCCCCCcCCCchhccCCcccceeeccccc---------------------CCCCCchhhcCCCCCCeeecccCcCC--
Q 038615 157 PSNKLNGFNGTIPREIGNLKNLTHLSLITNK---------------------RTGAIPSTLGHLTSLLYLDLSSNQLH-- 213 (274)
Q Consensus 157 ~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~---------------------l~~~~p~~l~~l~~L~~L~ls~N~l~-- 213 (274)
..+ ++.+. ...+.++++|+.+.+..+- ++..-..+|.++++|+.+++.+|.+.
T Consensus 211 p~~-l~~I~---~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~ 286 (401)
T 4fdw_A 211 PVT-LKEIG---SQAFLKTSQLKTIEIPENVSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDD 286 (401)
T ss_dssp CTT-CCEEC---TTTTTTCTTCCCEECCTTCCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCC
T ss_pred CCc-hheeh---hhHhhCCCCCCEEecCCCccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCC
Confidence 855 54322 2346777778877776531 11122334455556666666555543
Q ss_pred ---CCCchhccCCCCCCEEEcc
Q 038615 214 ---SFIPLEIGNFSALEELDLS 232 (274)
Q Consensus 214 ---~~~p~~l~~l~~L~~L~l~ 232 (274)
...+..|..+++|+.+++.
T Consensus 287 ~~~~I~~~aF~~c~~L~~l~l~ 308 (401)
T 4fdw_A 287 PEAMIHPYCLEGCPKLARFEIP 308 (401)
T ss_dssp TTCEECTTTTTTCTTCCEECCC
T ss_pred cccEECHHHhhCCccCCeEEeC
Confidence 2233455566666666665
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.63 E-value=5.4e-09 Score=82.55 Aligned_cols=118 Identities=17% Similarity=0.163 Sum_probs=82.5
Q ss_pred ccCCCCCccEEEccCC-CCCCC----CCccCCCCCCCCeeeccCCcCCCc----cchhccCCCCCcEEECCCCCCCCCc-
Q 038615 96 NFSCFPNLQYLNLWNN-NLSGS----IPPQIGSLSNLKYLNLRWNNLTGT----IPTEIGIFRNLEELYLPSNKLNGFN- 165 (274)
Q Consensus 96 ~l~~l~~L~~L~l~~n-~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~- 165 (274)
.+...+.|++|++++| .+... +...+...++|++|+|++|.++.. +...+...++|++|+|++|.++...
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 5667788888888888 77532 334456677888888888888743 2344555678899999999885210
Q ss_pred CCCchhccCCcccceeec--ccccCCCC----CchhhcCCCCCCeeecccCcCC
Q 038615 166 GTIPREIGNLKNLTHLSL--ITNKRTGA----IPSTLGHLTSLLYLDLSSNQLH 213 (274)
Q Consensus 166 ~~lp~~l~~l~~L~~L~l--~~n~l~~~----~p~~l~~l~~L~~L~ls~N~l~ 213 (274)
..+...+...++|++|++ ++|.+... +...+...++|++|++++|.+.
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 013445666778999999 77887653 3345556688999999999875
No 152
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.48 E-value=1.7e-07 Score=78.02 Aligned_cols=82 Identities=27% Similarity=0.283 Sum_probs=63.2
Q ss_pred CCCCCCCeeeccCCcCCC--ccchhccCCCCCcEEECCCCCCCCCcCCCchhccCCcccceeecccccCCCCCc------
Q 038615 122 GSLSNLKYLNLRWNNLTG--TIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIP------ 193 (274)
Q Consensus 122 ~~l~~L~~L~L~~n~l~~--~~p~~~~~l~~L~~L~L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p------ 193 (274)
..+++|++|+|++|.+++ .+|..+..+++|+.|+|++|.++++. .+ ..+..+ +|++|++++|.+.+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l-~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-EL-DKIKGL-KLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GG-GGGTTS-CCSEEECTTSTTGGGCSSHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hh-hhcccC-CcceEEccCCcCccccCcchhHH
Confidence 457889999999999987 45567778999999999999996442 12 234444 89999999999987665
Q ss_pred -hhhcCCCCCCeee
Q 038615 194 -STLGHLTSLLYLD 206 (274)
Q Consensus 194 -~~l~~l~~L~~L~ 206 (274)
..+..+++|+.||
T Consensus 244 ~~il~~~P~L~~LD 257 (267)
T 3rw6_A 244 SAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHCTTCCEES
T ss_pred HHHHHHCcccCeEC
Confidence 2467889999887
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.10 E-value=1.1e-06 Score=68.24 Aligned_cols=36 Identities=6% Similarity=-0.004 Sum_probs=22.1
Q ss_pred CCCCeeeccCCcCCCccchhccCCCCCcEEECCCCC
Q 038615 125 SNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNK 160 (274)
Q Consensus 125 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 160 (274)
.+|++||++++.++..--..+..+++|++|+|++|.
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~ 96 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCH 96 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCC
Confidence 356777777776664434445566666666666663
No 154
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.03 E-value=2.5e-06 Score=66.31 Aligned_cols=84 Identities=12% Similarity=0.109 Sum_probs=49.4
Q ss_pred CCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCc-CCCccchhccCC----CCCcEEECCCCC-CCCCcCCCchhccC
Q 038615 101 PNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNN-LTGTIPTEIGIF----RNLEELYLPSNK-LNGFNGTIPREIGN 174 (274)
Q Consensus 101 ~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~~~~l----~~L~~L~L~~n~-l~~~~~~lp~~l~~ 174 (274)
..|+.||++++.++..--..+..+++|++|+|++|. +++.--..++.+ ++|++|++++|. ++ +..+ ..+..
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT--D~Gl-~~L~~ 137 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT--DKGI-IALHH 137 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC--HHHH-HHGGG
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC--HHHH-HHHhc
Confidence 468888888888765544556778888888888874 654322334443 356777776653 43 1111 22344
Q ss_pred Ccccceeeccccc
Q 038615 175 LKNLTHLSLITNK 187 (274)
Q Consensus 175 l~~L~~L~l~~n~ 187 (274)
+++|++|+++++.
T Consensus 138 ~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 138 FRNLKYLFLSDLP 150 (176)
T ss_dssp CTTCCEEEEESCT
T ss_pred CCCCCEEECCCCC
Confidence 5555555555553
No 155
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.55 E-value=0.00034 Score=61.31 Aligned_cols=111 Identities=11% Similarity=0.134 Sum_probs=71.3
Q ss_pred ccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEECCCCCCCCCcCCCchhccCCcccceeecccccCCCCCchhhcC
Q 038615 119 PQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGH 198 (274)
Q Consensus 119 ~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~ 198 (274)
..|..+..|+.+.+..+..+ .-...+..+..|+.+.+.. .++.+. ...+.++.+|+.+.+..+ ++..-..+|.+
T Consensus 259 ~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~---~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~ 332 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELP---ESVFAGCISLKSIDIPEG-ITQILDDAFAG 332 (394)
T ss_dssp TTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEEC---TTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred ceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccC---ceeecCCCCcCEEEeCCc-ccEehHhHhhC
Confidence 45667777777777654432 3345566777888887753 332221 234677778888887654 44344456777
Q ss_pred CCCCCeeecccCcCCCCCchhccCCCCCCEEEccCCcc
Q 038615 199 LTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKI 236 (274)
Q Consensus 199 l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l 236 (274)
+.+|+.+.+..+ ++..-..+|.++++|+.+++.++..
T Consensus 333 C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 333 CEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp CTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred CCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence 788888887544 5554556778888888888877654
No 156
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.52 E-value=3.7e-05 Score=60.81 Aligned_cols=62 Identities=15% Similarity=0.101 Sum_probs=32.3
Q ss_pred cccceeecccccCCCC----CchhhcCCCCCCeeecccC---cCCCC----CchhccCCCCCCEEEccCCccC
Q 038615 176 KNLTHLSLITNKRTGA----IPSTLGHLTSLLYLDLSSN---QLHSF----IPLEIGNFSALEELDLSDNKIR 237 (274)
Q Consensus 176 ~~L~~L~l~~n~l~~~----~p~~l~~l~~L~~L~ls~N---~l~~~----~p~~l~~l~~L~~L~l~~N~l~ 237 (274)
+.|++|+|+.|.+... +.+.+..-+.|+.|+|++| .+... +.+.+..-+.|+.|+++.|.+.
T Consensus 98 ~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 98 PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred CccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 3445555555544321 2233444455777777654 33321 3345555677778887776653
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.40 E-value=0.00095 Score=58.41 Aligned_cols=127 Identities=15% Similarity=0.081 Sum_probs=64.2
Q ss_pred cCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEECCCCCCCCCcCCCchhccCCc
Q 038615 97 FSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLK 176 (274)
Q Consensus 97 l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~lp~~l~~l~ 176 (274)
+..+..++.+.+..+... .....+..+..++.+....+.+. ...+..+.+|+.+.+..+ ++.+. ...+.++.
T Consensus 249 f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~---~~aF~~c~ 320 (394)
T 4fs7_A 249 FYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIG---EEAFESCT 320 (394)
T ss_dssp TTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEEC---TTTTTTCT
T ss_pred ccccccceeEEcCCCcce-eeccccccccccceeccCceeec---cccccccccccccccccc-cceec---hhhhcCCC
Confidence 334444444444433221 12223344444444444333221 123455566666666543 32111 23356667
Q ss_pred ccceeecccccCCCCCchhhcCCCCCCeeecccCcCCCCCchhccCCCCCCEEEccC
Q 038615 177 NLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSD 233 (274)
Q Consensus 177 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~ 233 (274)
+|+.+++..+ ++..-..+|.++.+|+.+++..+ ++..-..+|.++++|+.+++..
T Consensus 321 ~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 321 SLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEG
T ss_pred CCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECC
Confidence 7777776543 44333456666777777777655 5444455677777777776654
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.28 E-value=0.0012 Score=57.19 Aligned_cols=130 Identities=15% Similarity=0.103 Sum_probs=78.3
Q ss_pred cCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEECCCCCCCCCcCCCchhccCCc
Q 038615 97 FSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLK 176 (274)
Q Consensus 97 l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~lp~~l~~l~ 176 (274)
+.....++.+.+..+ +.......+..+..|+.+.+..+ ++..-...+..+.+|+.+.+..+ ++.+. ...+.+++
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~---~~aF~~c~ 286 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVP---YLLCSGCS 286 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEEC---TTTTTTCT
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecc---cccccccc
Confidence 444555666665443 22122334566677777777654 44233445666777777777543 32111 13466777
Q ss_pred ccceeecccccCCCCCchhhcCCCCCCeeecccCcCCCCCchhccCCCCCCEEEccC
Q 038615 177 NLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSD 233 (274)
Q Consensus 177 ~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~ 233 (274)
+|+.+.+.++.+...-..+|.++.+|+.+.+..+ ++..-..+|.++++|+.+.+..
T Consensus 287 ~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 287 NLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp TCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred ccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 8888888777666555567777788888887644 5444446677777777776644
No 159
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.20 E-value=0.0006 Score=50.10 Aligned_cols=57 Identities=23% Similarity=0.214 Sum_probs=29.7
Q ss_pred EEECCCCCCCCCcCCCchhccCCcccceeecccccCCCCCchhhcCCCCCCeeecccCcCC
Q 038615 153 ELYLPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLH 213 (274)
Q Consensus 153 ~L~L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~ 213 (274)
.++.+++.++ ...+|..+ .++|++|+|++|.++...+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~--~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLT--WASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCC--TTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCc--cccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5566666653 01222211 124566666666666544455555666666666666553
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.17 E-value=0.0023 Score=55.96 Aligned_cols=85 Identities=14% Similarity=0.223 Sum_probs=42.1
Q ss_pred hhccCCCCCcEEECCCCCCCCCcCCCchhccCCcccceeecccccCCCCCchhhcCCCCCCeeecccCcCCCCCchhccC
Q 038615 143 TEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGN 222 (274)
Q Consensus 143 ~~~~~l~~L~~L~L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~ 222 (274)
..|..+..|+.+.+..+..+ + | ...+.+++.|+.+.+. +.+...-..+|.++.+|+.+++..+ ++..-..+|.+
T Consensus 259 ~aF~~c~~L~~i~lp~~~~~-I-~--~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~ 332 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVVS-I-G--TGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAG 332 (394)
T ss_dssp TTTTTCSSCCEEECCTTCCE-E-C--TTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred ceeeecccccEEecccccce-e-c--CcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhC
Confidence 34555566666665544321 0 1 1234555566666654 2233333345555666666666543 33333445566
Q ss_pred CCCCCEEEccC
Q 038615 223 FSALEELDLSD 233 (274)
Q Consensus 223 l~~L~~L~l~~ 233 (274)
+++|+.+.+..
T Consensus 333 C~~L~~i~ip~ 343 (394)
T 4gt6_A 333 CEQLERIAIPS 343 (394)
T ss_dssp CTTCCEEEECT
T ss_pred CCCCCEEEECc
Confidence 66666666643
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.13 E-value=0.0022 Score=55.65 Aligned_cols=125 Identities=14% Similarity=0.098 Sum_probs=88.3
Q ss_pred cCccccCCCCCccEEEccCCCCCCCCCccCCCCCCCCeeeccCCcCCCccchhccCCCCCcEEECCCCCCCCCcCCCchh
Q 038615 92 LGSLNFSCFPNLQYLNLWNNNLSGSIPPQIGSLSNLKYLNLRWNNLTGTIPTEIGIFRNLEELYLPSNKLNGFNGTIPRE 171 (274)
Q Consensus 92 l~~~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~lp~~ 171 (274)
+....+.....|+.+.+..+ ++..-...+..+.+|+.+.+..+ ++..-...+..+.+|+.+.+.++.++.+. ...
T Consensus 231 i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~---~~a 305 (379)
T 4h09_A 231 LGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLE---PRV 305 (379)
T ss_dssp ECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEEC---TTT
T ss_pred EccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceeh---hhh
Confidence 33336778889999999775 44334456788889999998654 44334456888999999999988775333 245
Q ss_pred ccCCcccceeecccccCCCCCchhhcCCCCCCeeecccCcCCCCCchhccCC
Q 038615 172 IGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNF 223 (274)
Q Consensus 172 l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l 223 (274)
+.++.+|+.+.+..+ ++..-..+|.++.+|+.+.+..+ ++..-..+|.++
T Consensus 306 F~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 306 FMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred hcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence 888999999999754 55444567889999999987554 443333455444
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.13 E-value=0.00017 Score=57.03 Aligned_cols=116 Identities=14% Similarity=0.094 Sum_probs=72.1
Q ss_pred ccCCCCCccEEEccCC-CCCCC----CCccCCCCCCCCeeeccCCcCCCc----cchhccCCCCCcEEECCCCCCCCCcC
Q 038615 96 NFSCFPNLQYLNLWNN-NLSGS----IPPQIGSLSNLKYLNLRWNNLTGT----IPTEIGIFRNLEELYLPSNKLNGFNG 166 (274)
Q Consensus 96 ~l~~l~~L~~L~l~~n-~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~~ 166 (274)
.+.+-+.|++|+|++| .+... +...+..-+.|++|+|++|.+.+. +.+.+..-+.|++|+|++|.|+. .|
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~-~G 114 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP-EL 114 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH-HH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH-HH
Confidence 4455677888888775 65421 334455667788888888888743 23334455778888888888852 11
Q ss_pred --CCchhccCCcccceeecccccC---CC----CCchhhcCCCCCCeeecccCcC
Q 038615 167 --TIPREIGNLKNLTHLSLITNKR---TG----AIPSTLGHLTSLLYLDLSSNQL 212 (274)
Q Consensus 167 --~lp~~l~~l~~L~~L~l~~n~l---~~----~~p~~l~~l~~L~~L~ls~N~l 212 (274)
.+-..+..-+.|++|+|++|.. .. .+.+.+..-++|+.|+++.|.+
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 1223345556688888876532 21 1334455667888898887754
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.00 E-value=0.0035 Score=54.73 Aligned_cols=66 Identities=15% Similarity=0.170 Sum_probs=46.9
Q ss_pred ccCCcccceeecccccCCCCCchhhcCCCCCCeeecccCcCCCCCchhccCCCCCCEEEccCCccCccc
Q 038615 172 IGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSSNQLHSFIPLEIGNFSALEELDLSDNKIRALQ 240 (274)
Q Consensus 172 l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~N~l~~~~p~~l~~l~~L~~L~l~~N~l~~~~ 240 (274)
+..+.+|+.+.+..+ +...-..+|..+.+|+.+++..+ ++..-..+|.++++|+.+++..| ++.+.
T Consensus 293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~ 358 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIG 358 (394)
T ss_dssp TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEEC
T ss_pred ccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEeh
Confidence 566777888887654 44344566788889999988654 65555678888899999988766 55443
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.93 E-value=0.0021 Score=47.13 Aligned_cols=56 Identities=25% Similarity=0.316 Sum_probs=31.5
Q ss_pred eeeccCCcCC-CccchhccCCCCCcEEECCCCCCCCCcCCCchhccCCcccceeecccccCC
Q 038615 129 YLNLRWNNLT-GTIPTEIGIFRNLEELYLPSNKLNGFNGTIPREIGNLKNLTHLSLITNKRT 189 (274)
Q Consensus 129 ~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~~~lp~~l~~l~~L~~L~l~~n~l~ 189 (274)
.++.+++.++ ..+|..+ .++|++|+|++|+++.+. +..+..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~---~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALP---PGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCC---TTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccC---hhhhhhccccCEEEecCCCee
Confidence 5566666664 2344322 235677777777775332 223556666777777776653
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=41.80 E-value=52 Score=22.09 Aligned_cols=14 Identities=29% Similarity=0.235 Sum_probs=6.1
Q ss_pred hccCCCCCcEEECC
Q 038615 144 EIGIFRNLEELYLP 157 (274)
Q Consensus 144 ~~~~l~~L~~L~L~ 157 (274)
.|..+.+|+.+.+.
T Consensus 38 aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 38 MFSGCTALEKLILT 51 (100)
T ss_dssp SSTTCTTCCCEEEC
T ss_pred HHhccCCccEEEEc
Confidence 34444444444443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=35.22 E-value=52 Score=22.09 Aligned_cols=38 Identities=13% Similarity=0.026 Sum_probs=21.1
Q ss_pred hccCCcccceeecccccCCCCCchhhcCCCCCCeeeccc
Q 038615 171 EIGNLKNLTHLSLITNKRTGAIPSTLGHLTSLLYLDLSS 209 (274)
Q Consensus 171 ~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ls~ 209 (274)
.|.++.+|+.+.+-.+ ++..-..+|.++.+|+.+.+.+
T Consensus 15 aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 15 LFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp TTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred HhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 3556666666666543 3323334566666666666544
No 167
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=22.23 E-value=21 Score=16.47 Aligned_cols=9 Identities=33% Similarity=1.228 Sum_probs=6.6
Q ss_pred CCcccceee
Q 038615 63 DHCNWVGIT 71 (274)
Q Consensus 63 ~~c~w~gv~ 71 (274)
..|+|.|..
T Consensus 6 gacswrgle 14 (23)
T 3ox7_P 6 GACSWRGLE 14 (26)
T ss_pred cccccccch
Confidence 358998864
Done!