BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038616
         (431 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3I1K|A Chain A, Structure Of Porcine Torovirus Hemagglutinin-esterase
 pdb|3I1K|B Chain B, Structure Of Porcine Torovirus Hemagglutinin-esterase
 pdb|3I1K|C Chain C, Structure Of Porcine Torovirus Hemagglutinin-esterase
 pdb|3I1L|A Chain A, Structure Of Porcine Torovirus Hemagglutinin-Esterase In
          Complex With Its Receptor
 pdb|3I1L|B Chain B, Structure Of Porcine Torovirus Hemagglutinin-Esterase In
          Complex With Its Receptor
 pdb|3I1L|C Chain C, Structure Of Porcine Torovirus Hemagglutinin-Esterase In
          Complex With Its Receptor
          Length = 377

 Score = 30.0 bits (66), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 28 NFHNDNGQGFD-FNYSNVGQNHVNYGQNELIPQRN 61
          + H +NG GFD F+YSN G   V Y      P RN
Sbjct: 57 SMHWNNGSGFDAFDYSNCGVEKVFYEGVNFSPHRN 91


>pdb|3DGC|L Chain L, Structure Of Il-22IL-22r1
 pdb|3DGC|M Chain M, Structure Of Il-22IL-22r1
          Length = 141

 Score = 28.9 bits (63), Expect = 5.1,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 20/26 (76%), Gaps = 1/26 (3%)

Query: 145 SSHQQPFLRNRNFLLSNQPNQLSDQN 170
           S+ QQP++ NR F+L+ + + L+DQN
Sbjct: 7   SNFQQPYITNRTFMLAKEAS-LADQN 31


>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
           Repeats Of Murine Gli-Kruppel Family Member Hkr3
          Length = 124

 Score = 28.1 bits (61), Expect = 8.6,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 17/35 (48%)

Query: 311 IHSLSRKKYGPYICPKCIQEFLTSQSFAAHVASAH 345
           +H +S     PY C  C Q+F+  +   +H+   H
Sbjct: 84  LHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLH 118


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.131    0.387 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,236,910
Number of Sequences: 62578
Number of extensions: 406717
Number of successful extensions: 606
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 603
Number of HSP's gapped (non-prelim): 7
length of query: 431
length of database: 14,973,337
effective HSP length: 102
effective length of query: 329
effective length of database: 8,590,381
effective search space: 2826235349
effective search space used: 2826235349
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)