BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038618
(114 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q00451|PRF1_SOLLC 36.4 kDa proline-rich protein OS=Solanum lycopersicum GN=TPRP-F1
PE=2 SV=1
Length = 346
Score = 105 bits (262), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 64/89 (71%), Positives = 76/89 (85%), Gaps = 1/89 (1%)
Query: 26 QQTCPIDALKLSACVDVLGGLIHVGIGGSPKEKCCPLLQGLADLDAAICLCTVIRVKALN 85
Q TCPIDALKL ACVDVLGGLIH+GIGGS K+ CCPLL GL DLDAAICLCT IR+K LN
Sbjct: 258 QPTCPIDALKLGACVDVLGGLIHIGIGGSAKQTCCPLLGGLVDLDAAICLCTTIRLKLLN 317
Query: 86 IVNLLVPVSLNVLVNDCGKHVPAGFKCPA 114
I N+++P++L VL++DCGK+ P FKCP+
Sbjct: 318 I-NIILPIALQVLIDDCGKYPPKDFKCPS 345
>sp|Q8RW93|LBP65_ARATH Putative lipid-binding protein At4g00165 OS=Arabidopsis thaliana
GN=At4g00165 PE=2 SV=1
Length = 128
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 66/103 (64%), Gaps = 3/103 (2%)
Query: 12 PPSSPSPKPKPPSKQQT--CPIDALKLSACVDVLGGLIHVGIGGSPKEKCCPLLQGLADL 69
P ++ P P PP+KQ T CP D LK C LG L+ IG P ++CC L++GLAD
Sbjct: 27 PGATVKPCPPPPAKQATTKCPRDTLKFGVCGSWLG-LVSEVIGTPPSQECCSLIKGLADF 85
Query: 70 DAAICLCTVIRVKALNIVNLLVPVSLNVLVNDCGKHVPAGFKC 112
+AA+CLCT ++ L + + +PV+L +L+N CGK+VP GF C
Sbjct: 86 EAAVCLCTALKTSILGVAPVKIPVALTLLLNSCGKNVPQGFVC 128
>sp|Q01595|CCDP_MAIZE Cortical cell-delineating protein OS=Zea mays PE=2 SV=1
Length = 129
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/88 (54%), Positives = 60/88 (68%), Gaps = 4/88 (4%)
Query: 26 QQTCPIDALKLSACVDVLGGLIHVGIGGSPKEKCCPLLQGLADLDAAICLCTVIRVKALN 85
CPIDALKL C VL GL+ VG+ E+CCPLL+GL DLDAA+CLCT I+ L
Sbjct: 45 HGRCPIDALKLKVCAKVL-GLVKVGL--PQYEQCCPLLEGLVDLDAALCLCTAIKANVLG 101
Query: 86 IVNLLVPVSLNVLVNDCGKHVPAGFKCP 113
I +L VP+SLN ++N+CG+ P F CP
Sbjct: 102 I-HLNVPLSLNFILNNCGRICPEDFTCP 128
>sp|P14009|14KD_DAUCA 14 kDa proline-rich protein DC2.15 OS=Daucus carota PE=2 SV=1
Length = 137
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/84 (51%), Positives = 59/84 (70%), Gaps = 1/84 (1%)
Query: 29 CPIDALKLSACVDVLGGLIHVGIGGSPKEKCCPLLQGLADLDAAICLCTVIRVKALNIVN 88
CP DALKL C DVL + +V IG P CC LL+GL +L+AA+CLCT I+ L N
Sbjct: 54 CPRDALKLGVCADVLNLVHNVVIGSPPTLPCCSLLEGLVNLEAAVCLCTAIKANILG-KN 112
Query: 89 LLVPVSLNVLVNDCGKHVPAGFKC 112
L +P++L++++N+CGK VP GF+C
Sbjct: 113 LNLPIALSLVLNNCGKQVPNGFEC 136
>sp|P24337|HPSE_SOYBN Hydrophobic seed protein OS=Glycine max PE=1 SV=1
Length = 80
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 48/78 (61%), Gaps = 10/78 (12%)
Query: 36 LSACVDVLGGLIHVGIGGSPKEKCCPLLQGLADLDAAICLCTVIRVKALNIVNLLVPVSL 95
LS C+++LGG + + CC L+ GL D++A +CLC I+++AL I+NL +L
Sbjct: 11 LSICLNILGGSL------GTVDDCCALIGGLGDIEAIVCLC--IQLRALGILNL--NRNL 60
Query: 96 NVLVNDCGKHVPAGFKCP 113
+++N CG+ P+ CP
Sbjct: 61 QLILNSCGRSYPSNATCP 78
>sp|Q5JTC6|AMER1_HUMAN APC membrane recruitment protein 1 OS=Homo sapiens GN=AMER1 PE=1
SV=2
Length = 1135
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 4 SNPPSVPKPPSSPSPKPKPPSKQQTCPIDALK-LSAC 39
+NP P P SP+P+P PP+ ++ D K + AC
Sbjct: 229 ANPQDAPGPKVSPTPEPSPPATEKMACKDPEKPMEAC 265
>sp|Q63ZM7|STABP_XENLA STAM-binding protein-like OS=Xenopus laevis GN=stambp PE=2 SV=1
Length = 416
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 4 SNPPSVPKPPSSPSPKPKPPSKQQTCPIDALKLSACVDVLGGLIHVGIGGSPKEKCCPLL 63
+ PP P PS + +P PP+ ++ + ++ GL HV I P++ CC L
Sbjct: 204 NEPPVTPLLPSYGTVQPHPPAVDRSLKPSSYGSNSSGVTSDGLRHVKI---PRDVCCKFL 260
Query: 64 Q 64
Q
Sbjct: 261 Q 261
>sp|Q8IYB3|SRRM1_HUMAN Serine/arginine repetitive matrix protein 1 OS=Homo sapiens
GN=SRRM1 PE=1 SV=2
Length = 904
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 6/34 (17%)
Query: 4 SNPPSVPKPPSSPSPKPK------PPSKQQTCPI 31
++PP PK +SPSP PK PP KQ++ P+
Sbjct: 615 ASPPPPPKRRASPSPPPKRRVSHSPPPKQRSSPV 648
>sp|A5YKK6|CNOT1_HUMAN CCR4-NOT transcription complex subunit 1 OS=Homo sapiens GN=CNOT1
PE=1 SV=2
Length = 2376
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 2 DCSNPPSVPK-PPSSPSPKPKPPSKQQTCPIDALKLSACVDVLGGLIHVGIGGS 54
+CSN + + PP PK +PPS I ++ +D L G+ + IGGS
Sbjct: 676 NCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQ----IDPLAGMTSLSIGGS 725
>sp|Q6ZQ08|CNOT1_MOUSE CCR4-NOT transcription complex subunit 1 OS=Mus musculus GN=Cnot1
PE=1 SV=2
Length = 2375
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 2 DCSNPPSVPK-PPSSPSPKPKPPSKQQTCPIDALKLSACVDVLGGLIHVGIGGS 54
+CSN + + PP PK +PPS I ++ +D L G+ + IGGS
Sbjct: 676 NCSNVMNKARQPPPGVMPKGRPPSASSLDAISPVQ----IDPLAGMASLSIGGS 725
>sp|Q5R5Q2|SRRM1_PONAB Serine/arginine repetitive matrix protein 1 OS=Pongo abelii
GN=SRRM1 PE=2 SV=1
Length = 917
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 6/34 (17%)
Query: 4 SNPPSVPKPPSSPSPKPK------PPSKQQTCPI 31
++PP PK +SPSP PK PP KQ++ P+
Sbjct: 629 ASPPPPPKRRASPSPPPKRRVSHSPPPKQRSSPV 662
>sp|P53452|DRD1L_TAKRU D(1)-like dopamine receptor OS=Takifugu rubripes GN=d14 PE=3 SV=1
Length = 459
Score = 29.3 bits (64), Expect = 7.5, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Query: 7 PSVPKPPSSPSPKPKPPSKQQTCPIDALKLSACV---DVLGGLIHVGIGGSPKEKCCPLL 63
PS P S PK S P L + D GG + VG+ + EK P +
Sbjct: 371 PSCQYQPKSHIPKEGNHSSSYVIPHSILCQEEELQKKDGFGGEMEVGLVNNAMEKVSPAI 430
Query: 64 QGLADLDAAICLCTV 78
G D DAA+ L T+
Sbjct: 431 SGNFDSDAAVTLETI 445
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.140 0.457
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,214,378
Number of Sequences: 539616
Number of extensions: 2064072
Number of successful extensions: 26835
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 90
Number of HSP's that attempted gapping in prelim test: 23137
Number of HSP's gapped (non-prelim): 3145
length of query: 114
length of database: 191,569,459
effective HSP length: 82
effective length of query: 32
effective length of database: 147,320,947
effective search space: 4714270304
effective search space used: 4714270304
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)