Query 038618
Match_columns 114
No_of_seqs 111 out of 288
Neff 4.2
Searched_HMMs 46136
Date Fri Mar 29 12:52:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038618.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038618hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14547 Hydrophob_seed: Hydro 100.0 1.6E-38 3.5E-43 219.8 4.4 85 28-113 1-85 (85)
2 cd01958 HPS_like HPS_like: Hyd 100.0 7.3E-39 1.6E-43 221.9 0.4 84 27-112 2-85 (85)
3 smart00499 AAI Plant lipid tra 96.8 0.0003 6.4E-09 44.0 -0.0 74 31-112 3-79 (79)
4 PF14368 LTP_2: Probable lipid 96.2 0.00035 7.7E-09 46.4 -2.7 56 53-112 40-96 (96)
5 cd04660 nsLTP_like nsLTP_like: 96.0 0.00076 1.6E-08 44.3 -1.6 68 34-112 6-73 (73)
6 cd01959 nsLTP2 nsLTP2: Non-spe 95.8 0.0013 2.9E-08 43.3 -1.3 63 33-108 3-65 (66)
7 cd00010 AAI_LTSS AAI_LTSS: Alp 92.3 0.029 6.4E-07 35.0 -0.6 48 54-103 14-62 (63)
8 PF00234 Tryp_alpha_amyl: Prot 89.2 0.076 1.7E-06 35.0 -0.9 68 34-112 13-90 (90)
9 cd01960 nsLTP1 nsLTP1: Non-spe 80.9 0.26 5.7E-06 33.0 -1.4 68 33-107 7-79 (89)
10 PHA03252 DNA packaging tegumen 32.5 29 0.00064 31.8 1.8 34 65-100 226-259 (589)
No 1
>PF14547 Hydrophob_seed: Hydrophobic seed protein
Probab=100.00 E-value=1.6e-38 Score=219.80 Aligned_cols=85 Identities=58% Similarity=1.214 Sum_probs=82.9
Q ss_pred CCCccccCccccccccccccccccCCCCCCCCCccccCcccccchhhhhHHHhhhhcccccccccchhhhhhhhcCCCCC
Q 038618 28 TCPIDALKLSACVDVLGGLIHVGIGGSPKEKCCPLLQGLADLDAAICLCTVIRVKALNIVNLLVPVSLNVLVNDCGKHVP 107 (114)
Q Consensus 28 ~CP~d~lkL~vCa~vL~gLv~~~~g~p~~~~CC~li~gL~dldAAvCLCtaiKanvlgiv~l~ipi~l~llln~CGk~~P 107 (114)
+||+|++||++|+||| |++++.+|.+.+++||++|+||+|+|||+|||+|+|+|+||++++++|+++++|||.|||++|
T Consensus 1 ~CP~d~lkLgvC~~vL-~l~~~~~g~~~~~~CC~li~gL~d~~AA~CLC~aika~vlg~i~~~ipv~l~~lln~CGk~~p 79 (85)
T PF14547_consen 1 TCPRDALKLGVCANVL-GLVNLVIGNPPRQPCCSLIAGLADLDAAVCLCTAIKANVLGLINVNIPVALNLLLNACGKTVP 79 (85)
T ss_pred CCCCcchhhhhhhhhh-hhhccccCCCCCCCcChHHhCcccchHHHHHHHHHhhhcccccccccccHHHHHHHHhCCcCc
Confidence 6999999999999999 899999999999999999999999999999999999999996699999999999999999999
Q ss_pred CCCccC
Q 038618 108 AGFKCP 113 (114)
Q Consensus 108 ~gF~C~ 113 (114)
+||+|+
T Consensus 80 ~gf~C~ 85 (85)
T PF14547_consen 80 SGFTCP 85 (85)
T ss_pred CCCcCC
Confidence 999996
No 2
>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins. In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset
Probab=100.00 E-value=7.3e-39 Score=221.94 Aligned_cols=84 Identities=54% Similarity=1.103 Sum_probs=82.1
Q ss_pred CCCCccccCccccccccccccccccCCCCCCCCCccccCcccccchhhhhHHHhhhhcccccccccchhhhhhhhcCCCC
Q 038618 27 QTCPIDALKLSACVDVLGGLIHVGIGGSPKEKCCPLLQGLADLDAAICLCTVIRVKALNIVNLLVPVSLNVLVNDCGKHV 106 (114)
Q Consensus 27 ~~CP~d~lkL~vCa~vL~gLv~~~~g~p~~~~CC~li~gL~dldAAvCLCtaiKanvlgiv~l~ipi~l~llln~CGk~~ 106 (114)
++||+|++|||+|+||| |++++.+|++++++||++|+||+|+|||+|||||||+|+||| ++|+|++|++|+|+|||++
T Consensus 2 ~~CP~dalkLgvCanvL-~l~~~~~g~~~~~~CC~ll~GL~dldAA~CLCtaikan~lgi-~~~~pv~l~llln~CGk~~ 79 (85)
T cd01958 2 PTCPRDALKLGVCANVL-GLSLLLLGTPAVQPCCPLIGGLADLDAAVCLCTAIKANILGI-SINIPVALSLLLNSCGRNV 79 (85)
T ss_pred CCCCcchHHhchhHhhh-hccccccCCCccchHHHHHcCchhhheeeeeeeeeeccccCc-ccccChhHHHHHHHHcCcC
Confidence 68999999999999999 788999999999999999999999999999999999999998 9999999999999999999
Q ss_pred CCCCcc
Q 038618 107 PAGFKC 112 (114)
Q Consensus 107 P~gF~C 112 (114)
|+||+|
T Consensus 80 P~gf~C 85 (85)
T cd01958 80 PPGFTC 85 (85)
T ss_pred CCCCcC
Confidence 999998
No 3
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=96.81 E-value=0.0003 Score=43.98 Aligned_cols=74 Identities=31% Similarity=0.637 Sum_probs=49.4
Q ss_pred ccccCccccccccccccccccCCCCCCCCCccccCcccccchhhhhHHHhhhhccccc---ccccchhhhhhhhcCCCCC
Q 038618 31 IDALKLSACVDVLGGLIHVGIGGSPKEKCCPLLQGLADLDAAICLCTVIRVKALNIVN---LLVPVSLNVLVNDCGKHVP 107 (114)
Q Consensus 31 ~d~lkL~vCa~vL~gLv~~~~g~p~~~~CC~li~gL~dldAAvCLCtaiKanvlgiv~---l~ipi~l~llln~CGk~~P 107 (114)
....++..|.+.+.+.. ....+.++||..++++. .+.|+|.+++..+.+++. ++ ......|.+.||...+
T Consensus 3 ~~~~~~~~c~~~~~~~~---~~~~p~~~CC~~l~~~~---~~~C~C~~~~~~~~~~~~~~~~~-~~~a~~lp~~C~~~~~ 75 (79)
T smart00499 3 QVLLQLAPCLSYLTGGS---PGAPPSQQCCSQLRGLN---SAQCRCLALRAAVLGILEIPGVN-AQNAASLPSACGVPPP 75 (79)
T ss_pred hhhhhHHhhHHHHcCCC---CCCCCchHHHHHHHHhc---ccCCcchhhhcccccccchhhhh-HHHHHhhHHhcCCCCC
Confidence 33445556766652211 12346688999999887 777999999998776521 12 3446678889999987
Q ss_pred CCCcc
Q 038618 108 AGFKC 112 (114)
Q Consensus 108 ~gF~C 112 (114)
. +.|
T Consensus 76 ~-~~C 79 (79)
T smart00499 76 Y-TDC 79 (79)
T ss_pred C-CCC
Confidence 5 544
No 4
>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A.
Probab=96.17 E-value=0.00035 Score=46.39 Aligned_cols=56 Identities=27% Similarity=0.605 Sum_probs=33.3
Q ss_pred CCCCCCCCccccCcccccchhhhhHHHhhhh-cccccccccchhhhhhhhcCCCCCCCCcc
Q 038618 53 GSPKEKCCPLLQGLADLDAAICLCTVIRVKA-LNIVNLLVPVSLNVLVNDCGKHVPAGFKC 112 (114)
Q Consensus 53 ~p~~~~CC~li~gL~dldAAvCLCtaiKanv-lgiv~l~ipi~l~llln~CGk~~P~gF~C 112 (114)
..+...||.-++.+.+. ...|||..++... .++ .+|..- ...|...||...|. ++|
T Consensus 40 ~~Ps~~CC~~l~~~~~~-~~~ClC~~~~~~~~~~~-~in~~~-a~~Lp~~Cg~~~~~-~~C 96 (96)
T PF14368_consen 40 PAPSAACCSALKSVVQA-DPPCLCQLLNSPGAPGF-GINVTR-ALALPAACGVPVPP-SKC 96 (96)
T ss_dssp ----HHHHHHHCC-----HCCHHHCCCC-CCHCHH-CCTCHH-HHHHHHHCTSS-S-----
T ss_pred CCCCHHHHHHHHHhccC-CCCCHHHhcCccccccC-CcCHHH-HHHHHHHcCCCCCC-CCC
Confidence 45778899999999764 4899999999977 444 555444 44577899999998 887
No 5
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=96.04 E-value=0.00076 Score=44.32 Aligned_cols=68 Identities=26% Similarity=0.505 Sum_probs=45.3
Q ss_pred cCccccccccccccccccCCCCCCCCCccccCcccccchhhhhHHHhhhhcccccccccchhhhhhhhcCCCCCCCCcc
Q 038618 34 LKLSACVDVLGGLIHVGIGGSPKEKCCPLLQGLADLDAAICLCTVIRVKALNIVNLLVPVSLNVLVNDCGKHVPAGFKC 112 (114)
Q Consensus 34 lkL~vCa~vL~gLv~~~~g~p~~~~CC~li~gL~dldAAvCLCtaiKanvlgiv~l~ipi~l~llln~CGk~~P~gF~C 112 (114)
..|..|...+.+ -.-...+.+.||+-|+.+ |. .|+|..+++..+.+||.+ ....|...||..+|. |+|
T Consensus 6 ~~L~~C~~yl~~---~~~~~~Ps~~CC~~vk~~---~~-~C~C~~~~~~~~~~i~~~---~a~~Lp~~Cgv~~p~-~~C 73 (73)
T cd04660 6 DLLAECQPYVTG---PNPPPPPSRECCAALRRA---DL-PCLCRYKTSLVLQIIDPD---KAVYLPAKCGLPLPP-SSC 73 (73)
T ss_pred HHHHHHHHHHcC---CCCCCCCCHHHHHHHHcC---Cc-CCEeeccCCCcccccCHH---HHHHHHHHcCCCCCC-CCC
Confidence 356667766521 000113567799999974 33 399999988766543433 356688999999999 987
No 6
>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp
Probab=95.78 E-value=0.0013 Score=43.32 Aligned_cols=63 Identities=25% Similarity=0.567 Sum_probs=45.9
Q ss_pred ccCccccccccccccccccCCCCCCCCCccccCcccccchhhhhHHHhhhhcccccccccchhhhhhhhcCCCCCC
Q 038618 33 ALKLSACVDVLGGLIHVGIGGSPKEKCCPLLQGLADLDAAICLCTVIRVKALNIVNLLVPVSLNVLVNDCGKHVPA 108 (114)
Q Consensus 33 ~lkL~vCa~vL~gLv~~~~g~p~~~~CC~li~gL~dldAAvCLCtaiKanvlgiv~l~ipi~l~llln~CGk~~P~ 108 (114)
..+|..|...+. .|.++...||.-|+. +--|||.-+|...|+. -++.+-++. |...||..+|.
T Consensus 3 ~~~L~~C~~ai~------~~~~Ps~~CC~~Lk~-----~~~CLC~y~~~p~l~~-~i~~~~A~~-l~~~Cgv~~P~ 65 (66)
T cd01959 3 PTQLSPCLPAIL------GGSPPSAACCAKLKE-----QQSCLCQYAKNPSLKQ-YVNSPNARK-VLAACGVPYPN 65 (66)
T ss_pred hhhcccCHHHHh------CCCCCCHHHHHHHhc-----CCCCeeeeecCccHHh-hcCcHHHHH-HHHHcCCCCCC
Confidence 457888888652 356788999999996 3379999998866664 345555444 77899999864
No 7
>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.
Probab=92.33 E-value=0.029 Score=34.96 Aligned_cols=48 Identities=25% Similarity=0.596 Sum_probs=31.9
Q ss_pred CCCCCCCccccCcccccchhhhhHHHhhhhcccccc-cccchhhhhhhhcC
Q 038618 54 SPKEKCCPLLQGLADLDAAICLCTVIRVKALNIVNL-LVPVSLNVLVNDCG 103 (114)
Q Consensus 54 p~~~~CC~li~gL~dldAAvCLCtaiKanvlgiv~l-~ipi~l~llln~CG 103 (114)
.+...||.-++.+.+.| ..|||..+|........+ | .-....|.+.||
T Consensus 14 ~Ps~~CC~~l~~~~~~~-~~ClC~~~~~~~~~~~~~~~-~~~a~~LP~~Cg 62 (63)
T cd00010 14 APPSDCCSGLKSVVKSD-PKCLCAALNGPGASLLGLKN-ATRALALPAACG 62 (63)
T ss_pred CCChHHHHHHHHHHhcC-hhhHHHHHcCccccccCccc-HHHHHhchHhcC
Confidence 46778999999887664 469999999866543111 1 223445666776
No 8
>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]. The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....
Probab=89.15 E-value=0.076 Score=35.02 Aligned_cols=68 Identities=26% Similarity=0.596 Sum_probs=46.5
Q ss_pred cCccccccccccccccccCCCCCCCCCccccCcccccchhhhhHHHhhhhcccc----------cccccchhhhhhhhcC
Q 038618 34 LKLSACVDVLGGLIHVGIGGSPKEKCCPLLQGLADLDAAICLCTVIRVKALNIV----------NLLVPVSLNVLVNDCG 103 (114)
Q Consensus 34 lkL~vCa~vL~gLv~~~~g~p~~~~CC~li~gL~dldAAvCLCtaiKanvlgiv----------~l~ipi~l~llln~CG 103 (114)
..|..|...+.+- - ..+.+.||.-|+.| -..|.|.+||..+.+++ .++. -....|.+.||
T Consensus 13 ~~l~~c~~~~~~~----~-~~~~~~CC~~L~~l----~~~C~C~~i~~~~~~~~~q~~~~~~~~~~~~-~~a~~LP~~C~ 82 (90)
T PF00234_consen 13 VRLSPCLPYLQGG----C-QQPSQQCCQQLRQL----DPQCRCEAIRQMVRQVIQQQQQGGQEMQIMA-QRAQNLPSMCN 82 (90)
T ss_dssp SHHHGGHHHHTTS----S-SHHHHHHHHHHHHH----HHHHHHHHHHHHHHHSHHCTSTCSHHHHHHH-HHHHHHHHHTT
T ss_pred ccccccHHHHhcc----c-ccchHHHhHHHHHH----hHHhhCHHHHHHHHhhhhhhhhhHHHHHHHH-HHHHHHHHHCC
Confidence 4456666655221 1 13456799999988 88999999999988731 3333 34567888999
Q ss_pred CCCCCCCcc
Q 038618 104 KHVPAGFKC 112 (114)
Q Consensus 104 k~~P~gF~C 112 (114)
..+|. |.|
T Consensus 83 v~~~~-~~C 90 (90)
T PF00234_consen 83 VSPPY-TDC 90 (90)
T ss_dssp SSSSS-S-G
T ss_pred CCCCC-CCC
Confidence 99887 665
No 9
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
Probab=80.86 E-value=0.26 Score=32.98 Aligned_cols=68 Identities=26% Similarity=0.502 Sum_probs=41.3
Q ss_pred ccCccccccccccccccccCCCCCCCCCccccCcccc----cchhhhhHHHhhhhccccc-ccccchhhhhhhhcCCCCC
Q 038618 33 ALKLSACVDVLGGLIHVGIGGSPKEKCCPLLQGLADL----DAAICLCTVIRVKALNIVN-LLVPVSLNVLVNDCGKHVP 107 (114)
Q Consensus 33 ~lkL~vCa~vL~gLv~~~~g~p~~~~CC~li~gL~dl----dAAvCLCtaiKanvlgiv~-l~ipi~l~llln~CGk~~P 107 (114)
..+|.-|.+.+.|- +..+...||.-++.|.+. +...|+|.-+|....++ . +|... +..|-..||-..+
T Consensus 7 ~~~l~~C~~y~~g~-----~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~~~~-~~i~~~~-a~~LP~~C~v~~~ 79 (89)
T cd01960 7 TSLLAPCLGYLTGG-----GPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAGI-SGLNPGR-AAGLPGKCGVSIP 79 (89)
T ss_pred HhhHHhHHHHHhCC-----CCCCChHHhhhhHHHhhccCCCCchhhhhhccccccccc-CCCCHHH-HHhChHhcccCCC
Confidence 34567777776431 134677899999988654 22345666667666554 2 33332 3447778988765
No 10
>PHA03252 DNA packaging tegument protein UL25; Provisional
Probab=32.45 E-value=29 Score=31.76 Aligned_cols=34 Identities=26% Similarity=0.284 Sum_probs=22.9
Q ss_pred CcccccchhhhhHHHhhhhcccccccccchhhhhhh
Q 038618 65 GLADLDAAICLCTVIRVKALNIVNLLVPVSLNVLVN 100 (114)
Q Consensus 65 gL~dldAAvCLCtaiKanvlgiv~l~ipi~l~llln 100 (114)
.|+|+|||.||=.|-++..-+ ...+|.+++-+|.
T Consensus 226 ~lSD~eAaLCLl~ay~~~~~~--~~~~P~t~~elL~ 259 (589)
T PHA03252 226 VLSDLEAAACLLAAYYAALED--GRDDPTSVVGVLT 259 (589)
T ss_pred cccchhHHHHHHHHHHhccCC--CCCCCcCHHHHHH
Confidence 688999999999998874432 2344555444443
Done!