Query 038618
Match_columns 114
No_of_seqs 111 out of 288
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 22:29:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038618.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038618hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hyp_A Hydrophobic protein fro 100.0 2.9E-32 1E-36 186.4 0.8 75 26-114 5-79 (80)
2 1n89_A Lipid transfer protein; 95.8 0.00058 2E-08 43.7 -2.0 62 33-107 4-65 (67)
3 1l6h_A LTP2, non-specific lipi 95.5 0.0006 2.1E-08 43.8 -2.8 62 33-107 5-66 (69)
4 2rkn_A DIR1 protein, AT5G48485 95.0 0.0024 8.3E-08 41.4 -1.1 69 27-107 3-74 (77)
5 2alg_A Non-specific lipid tran 87.3 0.055 1.9E-06 36.1 -1.6 64 34-107 9-79 (92)
6 1siy_A LTP 1, NS-LTP1, nonspec 86.0 0.035 1.2E-06 37.0 -3.1 70 29-107 3-78 (91)
7 2ljo_A Non-specific lipid-tran 85.4 0.13 4.3E-06 34.7 -0.5 59 54-113 23-89 (93)
8 1afh_A Maize nonspecific lipid 80.6 0.039 1.3E-06 36.9 -4.6 67 32-107 7-80 (93)
9 1bwo_A NS-LTP1, nonspecific li 75.1 0.06 2E-06 35.9 -5.0 65 34-107 8-78 (90)
10 1t12_A LTP 1, nonspecific lipi 69.8 0.2 7E-06 33.3 -3.3 64 33-107 8-78 (91)
No 1
>1hyp_A Hydrophobic protein from soybean; hydrophobic SEED protein; 1.80A {Glycine max} SCOP: a.52.1.1
Probab=99.97 E-value=2.9e-32 Score=186.36 Aligned_cols=75 Identities=40% Similarity=1.019 Sum_probs=66.3
Q ss_pred CCCCCccccCccccccccccccccccCCCCCCCCCccccCcccccchhhhhHHHhhhhcccccccccchhhhhhhhcCCC
Q 038618 26 QQTCPIDALKLSACVDVLGGLIHVGIGGSPKEKCCPLLQGLADLDAAICLCTVIRVKALNIVNLLVPVSLNVLVNDCGKH 105 (114)
Q Consensus 26 ~~~CP~d~lkL~vCa~vL~gLv~~~~g~p~~~~CC~li~gL~dldAAvCLCtaiKanvlgiv~l~ipi~l~llln~CGk~ 105 (114)
+++|| |||+|+|||||++ | ++++|||+|+||+|+|||+|||||||+ ||| +|+|++|++|+|.|||+
T Consensus 5 ~~~CP----kLgvCanvL~g~~----~--~~~~CC~Ll~GL~dleAAvCLCtaik~--Lgi--lnlpv~L~llln~Cgk~ 70 (80)
T 1hyp_A 5 RPSCP----DLSICLNILGGSL----G--TVDDCCALIGGLGDIEAIVCLCIQLRA--LGI--LNLNRNLQLILNSCGRS 70 (80)
T ss_dssp -CCSC----CCGGGGGGGGTCC----T--THHHHHHHHHTSCHHHHHHHHHHHHHH--HTC--SCHHHHHHHHHHHTTCS
T ss_pred CCCCC----chhHHHHHhCcCC----C--CCCccchhhhCcchhhhhhhhhhhccc--cce--eecChhHHHHHHHhCCc
Confidence 35799 8999999997543 2 567899999999999999999999994 887 68899999999999999
Q ss_pred CCCCCccCC
Q 038618 106 VPAGFKCPA 114 (114)
Q Consensus 106 ~P~gF~C~~ 114 (114)
+|+||+|+.
T Consensus 71 ~P~gF~C~~ 79 (80)
T 1hyp_A 71 YPSNATCPR 79 (80)
T ss_dssp SCCCCCCSC
T ss_pred CcCCCCCCC
Confidence 999999974
No 2
>1n89_A Lipid transfer protein; lipid transport; HET: PGM; NMR {Triticum turgidum subsp} SCOP: a.52.1.1 PDB: 1tuk_A*
Probab=95.80 E-value=0.00058 Score=43.67 Aligned_cols=62 Identities=24% Similarity=0.563 Sum_probs=44.2
Q ss_pred ccCccccccccccccccccCCCCCCCCCccccCcccccchhhhhHHHhhhhcccccccccchhhhhhhhcCCCCC
Q 038618 33 ALKLSACVDVLGGLIHVGIGGSPKEKCCPLLQGLADLDAAICLCTVIRVKALNIVNLLVPVSLNVLVNDCGKHVP 107 (114)
Q Consensus 33 ~lkL~vCa~vL~gLv~~~~g~p~~~~CC~li~gL~dldAAvCLCtaiKanvlgiv~l~ipi~l~llln~CGk~~P 107 (114)
..+|..|...+. -|.++...||.-+++ +..|||..+|.-.++. .||.+.+.+ |...||..+|
T Consensus 4 ~~~L~pC~~~v~------~~~~Ps~~CC~~lk~-----~~~ClC~~~k~~~~~~-~in~~~A~~-Lp~~Cgv~~P 65 (67)
T 1n89_A 4 ASQLAVCASAIL------SGAKPSGECCGNLRA-----QQGCFCQYAKDPTYGQ-YIRSPHARD-TLTSCGLAVP 65 (67)
T ss_dssp SSTTHHHHHHHT------TCCCCCHHHHHHHHH-----HSSHHHHGGGCSTTHH-HHTCHHHHH-HHHHHTSCCS
T ss_pred hhhcccCHHHHc------CCCCCCHHHHHhhCC-----CCCCCCccccCccccc-ccCHHHHHH-HHHHcCCCCC
Confidence 346777877652 234567789999984 4889999998766664 455555544 7779999987
No 3
>1l6h_A LTP2, non-specific lipid transfer protein; NSLTP2, plant LTP, lipid transport; NMR {Oryza sativa} SCOP: a.52.1.1
Probab=95.51 E-value=0.0006 Score=43.82 Aligned_cols=62 Identities=24% Similarity=0.553 Sum_probs=43.9
Q ss_pred ccCccccccccccccccccCCCCCCCCCccccCcccccchhhhhHHHhhhhcccccccccchhhhhhhhcCCCCC
Q 038618 33 ALKLSACVDVLGGLIHVGIGGSPKEKCCPLLQGLADLDAAICLCTVIRVKALNIVNLLVPVSLNVLVNDCGKHVP 107 (114)
Q Consensus 33 ~lkL~vCa~vL~gLv~~~~g~p~~~~CC~li~gL~dldAAvCLCtaiKanvlgiv~l~ipi~l~llln~CGk~~P 107 (114)
..+|..|...+. -|.++...||.-+++ +..|||..+|.-.++. .||.+.+.+ |...||..+|
T Consensus 5 ~~~L~pC~~~v~------~~~~Ps~~CC~~lk~-----~~~ClC~~~k~~~~~~-~in~~~A~~-Lp~~Cgv~~P 66 (69)
T 1l6h_A 5 AGQLTVCTGAIA------GGARPTAACCSSLRA-----QQGCFCQFAKDPRYGR-YVNSPNARK-AVSSCGIALP 66 (69)
T ss_dssp TTTHHHHHHHHT------TCCSTTHHHHHHHHH-----HHHHHHHHTTCSSHHH-HTTTTTGGG-CCCCCSSCSC
T ss_pred hhhcccCHHHHc------CCCCCCHHHHHhhCC-----CCCCCCccccCccccc-ccCHHHHHH-HHHHcCCCCC
Confidence 345678877662 234567789999984 4889999998766654 455555544 7779999987
No 4
>2rkn_A DIR1 protein, AT5G48485; LTP, defense signaling protein, signaling protein, lipid TRA; HET: LP3; 1.60A {Arabidopsis thaliana}
Probab=95.02 E-value=0.0024 Score=41.35 Aligned_cols=69 Identities=25% Similarity=0.524 Sum_probs=45.5
Q ss_pred CCCCccccCccccccccccccccccCCCCCCCCCccccCcccccchhhhhHHHh---hhhcccccccccchhhhhhhhcC
Q 038618 27 QTCPIDALKLSACVDVLGGLIHVGIGGSPKEKCCPLLQGLADLDAAICLCTVIR---VKALNIVNLLVPVSLNVLVNDCG 103 (114)
Q Consensus 27 ~~CP~d~lkL~vCa~vL~gLv~~~~g~p~~~~CC~li~gL~dldAAvCLCtaiK---anvlgiv~l~ipi~l~llln~CG 103 (114)
..|-.+..+|..|...+.+ .-..++...||.-+++ +| ..|||..++ +.-+|| |. ..++ .|...||
T Consensus 3 ~~C~~~~~~L~pC~~yv~~----~~~~~Ps~~CC~~lk~-~~---~~ClC~~~~~~~~~~~gi-n~--~~A~-~LP~~Cg 70 (77)
T 2rkn_A 3 DLCGMSQDELNECKPAVSK----ENPTSPSQPCCTALQH-AD---FACLCGYKNSPWLGSFGV-DP--ELAS-ALPKQCG 70 (77)
T ss_dssp CBTTBCHHHHHHHGGGGBS----SSCCCCCHHHHHHHTT-CC---HHHHHTTTTCHHHHHHTB-CH--HHHH-HHHHHTT
T ss_pred chHHhHHHhHhhCHHHHcC----CCCCCCCHHHHHHHHh-cC---cCCcCcccCCcchhhcCc-CH--HHHH-HHHHHcC
Confidence 4566667778888877622 0013466779999998 33 389999888 444454 43 3343 4778999
Q ss_pred CCCC
Q 038618 104 KHVP 107 (114)
Q Consensus 104 k~~P 107 (114)
..+|
T Consensus 71 v~~p 74 (77)
T 2rkn_A 71 LANA 74 (77)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 9876
No 5
>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A*
Probab=87.29 E-value=0.055 Score=36.12 Aligned_cols=64 Identities=27% Similarity=0.611 Sum_probs=42.2
Q ss_pred cCccccccccccccccccCCCCCCCCCccccCcccc-----cc-hhhhhHHHhhhhc-ccccccccchhhhhhhhcCCCC
Q 038618 34 LKLSACVDVLGGLIHVGIGGSPKEKCCPLLQGLADL-----DA-AICLCTVIRVKAL-NIVNLLVPVSLNVLVNDCGKHV 106 (114)
Q Consensus 34 lkL~vCa~vL~gLv~~~~g~p~~~~CC~li~gL~dl-----dA-AvCLCtaiKanvl-giv~l~ipi~l~llln~CGk~~ 106 (114)
.+|..|.+.+.| |.++...||.-+++|... |. +.|||...++.-+ || | ...+. .|...||-.+
T Consensus 9 ~~L~pCl~y~~~------~~~p~~~CC~~lk~l~~~a~t~~d~~~~ClC~~~~~~~~~~i-n--~~~A~-~LP~~Cgv~~ 78 (92)
T 2alg_A 9 SSLAPCIPYVRG------GGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGV-N--PNNAA-ALPGKCGVSI 78 (92)
T ss_dssp HHHGGGHHHHHH------CSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHSTTC-C--HHHHH-HHHHHTTCCC
T ss_pred HhccCcHHHHcC------CCCCCHHHHHHHHHHHhhhcccCCCCcCCccccCcccccCcc-C--hHHHH-HHHHHcCCCC
Confidence 356777776622 224555799999987632 21 5899997777766 44 4 34343 4778999987
Q ss_pred C
Q 038618 107 P 107 (114)
Q Consensus 107 P 107 (114)
|
T Consensus 79 p 79 (92)
T 2alg_A 79 P 79 (92)
T ss_dssp S
T ss_pred C
Confidence 7
No 6
>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var}
Probab=86.01 E-value=0.035 Score=37.05 Aligned_cols=70 Identities=24% Similarity=0.530 Sum_probs=42.0
Q ss_pred CCccccCccccccccccccccccCCCCCCCCCccccCcccc-----cc-hhhhhHHHhhhhcccccccccchhhhhhhhc
Q 038618 29 CPIDALKLSACVDVLGGLIHVGIGGSPKEKCCPLLQGLADL-----DA-AICLCTVIRVKALNIVNLLVPVSLNVLVNDC 102 (114)
Q Consensus 29 CP~d~lkL~vCa~vL~gLv~~~~g~p~~~~CC~li~gL~dl-----dA-AvCLCtaiKanvlgiv~l~ipi~l~llln~C 102 (114)
|-....+|..|.+.+.+ |.++...||.-+++|.+. |. +.|||..--+.-++ .||...++ .|...|
T Consensus 3 C~~v~~~L~pCl~yv~~------~~~Ps~~CC~~lk~l~~~a~t~~d~~~~ClC~k~~~~~~~--~in~~~A~-~LP~~C 73 (91)
T 1siy_A 3 CGQVQGNLAQCIGFLQK------GGVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVR--GINPNNAE-ALPGKC 73 (91)
T ss_dssp TTTTHHHHHHHHHHHTS------CSCCCHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHTTCCS--SCCHHHHH-HHHHHH
T ss_pred HHHHHHhccCcHHHHhC------CCCCcHHHHHHHHHHHhhhccCCCCCcCCcccCCcccccC--CcCHHHHH-HHHHHc
Confidence 44444567777776632 233666799999988543 32 68999722222331 23434343 477899
Q ss_pred CCCCC
Q 038618 103 GKHVP 107 (114)
Q Consensus 103 Gk~~P 107 (114)
|..+|
T Consensus 74 gv~~p 78 (91)
T 1siy_A 74 GVNIP 78 (91)
T ss_dssp TCCCS
T ss_pred CCCCC
Confidence 99876
No 7
>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris}
Probab=85.39 E-value=0.13 Score=34.73 Aligned_cols=59 Identities=22% Similarity=0.478 Sum_probs=39.4
Q ss_pred CCCCCCCccccCccccc----chhhhhHHHhhhhcccccccccchhhhhhhhcCCCCC----CCCccC
Q 038618 54 SPKEKCCPLLQGLADLD----AAICLCTVIRVKALNIVNLLVPVSLNVLVNDCGKHVP----AGFKCP 113 (114)
Q Consensus 54 p~~~~CC~li~gL~dld----AAvCLCtaiKanvlgiv~l~ipi~l~llln~CGk~~P----~gF~C~ 113 (114)
.+..+||.=+++|.+.- --.|+|..+|...-++..||..-+ ..|-..||-.+| ..+.|.
T Consensus 23 ~p~~~CC~gv~~l~~~a~t~~dr~~~C~clk~~a~~~~~in~~~a-~~LP~~CgV~~p~~Is~~~dC~ 89 (93)
T 2ljo_A 23 GPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNA-AALPGKCGVNIPYKISTTTNCN 89 (93)
T ss_dssp CCCHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHGGGCTTCCHHHH-HHHHHHHTCCCSSCCSTTCCGG
T ss_pred CCCCchhhHHHHHHHHhcCcccHHHHHHhHHhhhhccCCcCHHHH-HhhhHhcCCCCCCCCCCCCCCC
Confidence 35667999888776532 246889888876544434454433 447789999988 566663
No 8
>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A*
Probab=80.56 E-value=0.039 Score=36.90 Aligned_cols=67 Identities=24% Similarity=0.542 Sum_probs=41.7
Q ss_pred cccCccccccccccccccccCCCCCCCCCccccCcccc---cc---hhhhhHHHhhhhc-ccccccccchhhhhhhhcCC
Q 038618 32 DALKLSACVDVLGGLIHVGIGGSPKEKCCPLLQGLADL---DA---AICLCTVIRVKAL-NIVNLLVPVSLNVLVNDCGK 104 (114)
Q Consensus 32 d~lkL~vCa~vL~gLv~~~~g~p~~~~CC~li~gL~dl---dA---AvCLCtaiKanvl-giv~l~ipi~l~llln~CGk 104 (114)
...+|..|.+.+.| -+..+...||.-+++|.+. .+ +.|||....+.-+ || |. ..++ .|-..||-
T Consensus 7 v~~~L~pCl~y~~~-----~~~~Ps~~CC~gv~~l~~~a~t~~dr~~~ClC~~~~~~~~~~i-n~--~~A~-~LP~~C~v 77 (93)
T 1afh_A 7 VASAIAPCISYARG-----QGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGL-NA--GNAA-SIPSKCGV 77 (93)
T ss_dssp HHHHHGGGHHHHTT-----SCCSCCHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHTTSTTC-CH--HHHH-HHHHHHHC
T ss_pred HHHhccCcHHHHcC-----CCCCChHHHHHHHHHHHHhhcCCCCCcccCEeeccccccccCc-CH--HHHH-HHHHHcCC
Confidence 34467777777632 1233555799999988532 22 6899986555545 44 43 3333 47778998
Q ss_pred CCC
Q 038618 105 HVP 107 (114)
Q Consensus 105 ~~P 107 (114)
.+|
T Consensus 78 ~~p 80 (93)
T 1afh_A 78 SIP 80 (93)
T ss_dssp CCS
T ss_pred CCC
Confidence 876
No 9
>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A*
Probab=75.06 E-value=0.06 Score=35.87 Aligned_cols=65 Identities=22% Similarity=0.525 Sum_probs=39.2
Q ss_pred cCccccccccccccccccCCCCCCCCCccccCccccc------chhhhhHHHhhhhcccccccccchhhhhhhhcCCCCC
Q 038618 34 LKLSACVDVLGGLIHVGIGGSPKEKCCPLLQGLADLD------AAICLCTVIRVKALNIVNLLVPVSLNVLVNDCGKHVP 107 (114)
Q Consensus 34 lkL~vCa~vL~gLv~~~~g~p~~~~CC~li~gL~dld------AAvCLCtaiKanvlgiv~l~ipi~l~llln~CGk~~P 107 (114)
.+|..|.+.+.| |.++...||.-+++|...- -+.|||..-.+.-++ .||...+ ..|...||-.+|
T Consensus 8 ~~L~pCl~y~~~------~~~Ps~~CC~~lk~l~~~a~t~~dr~~~ClClk~~~~~~~--~in~~~A-~~LP~~C~v~~p 78 (90)
T 1bwo_A 8 SLVRPCLSYVQG------GPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIH--NLNEDNA-RSIPPKCGVNLP 78 (90)
T ss_dssp HHHGGGHHHHTT------CSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTCT--TCCHHHH-HTHHHHHTCCCS
T ss_pred HhhcccHHHHcC------CCCCCHHHhHHHHHHHhhccCCCCCCccCcCccCchhccC--CcCHHHH-HHHHHHcCCCCC
Confidence 456777776632 2236667999999876321 268999533333332 2333333 347789999876
No 10
>1t12_A LTP 1, nonspecific lipid-transfer protein 1; cystein rich protein, lipid transport; NMR {Nicotiana tabacum}
Probab=69.78 E-value=0.2 Score=33.34 Aligned_cols=64 Identities=27% Similarity=0.528 Sum_probs=39.4
Q ss_pred ccCccccccccccccccccCCCCCCCCCccccCccccc------chhhhhHHHhhhhc-ccccccccchhhhhhhhcCCC
Q 038618 33 ALKLSACVDVLGGLIHVGIGGSPKEKCCPLLQGLADLD------AAICLCTVIRVKAL-NIVNLLVPVSLNVLVNDCGKH 105 (114)
Q Consensus 33 ~lkL~vCa~vL~gLv~~~~g~p~~~~CC~li~gL~dld------AAvCLCtaiKanvl-giv~l~ipi~l~llln~CGk~ 105 (114)
..+|..|.+.+.| -+. +. .||.-+++|...- -+.|||..--++-+ || |.+ .++ .|-..||-.
T Consensus 8 ~~~L~pCl~y~~~-----~~~-P~-~CC~gv~~l~~~a~t~~dr~~~ClClk~~~~~~~~i-n~~--~A~-~LP~~C~v~ 76 (91)
T 1t12_A 8 TSNLAPCLAYLRN-----TGP-LG-RCCGGVKALVNSARTTEDRQIACTCLKSAAGAISGI-NLG--KAA-GLPSTCGVN 76 (91)
T ss_dssp HHHTHHHHHHHTT-----SSC-CT-THHHHHHHHHHTTCSTHHHHHHHHHHHHHHHHCTTC-CHH--HHH-HHHHHTTCC
T ss_pred HHhccCcHHHHcC-----CCC-hH-HHHHHHHHHHhhccCCCCCCccCCCccccccccCCc-Chh--HHH-HHHHHcCCC
Confidence 3456677776632 122 55 8999999886531 27899963333444 44 433 333 477899998
Q ss_pred CC
Q 038618 106 VP 107 (114)
Q Consensus 106 ~P 107 (114)
+|
T Consensus 77 ~p 78 (91)
T 1t12_A 77 IP 78 (91)
T ss_dssp CS
T ss_pred CC
Confidence 76
Done!