BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038619
(129 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 65/121 (53%), Gaps = 9/121 (7%)
Query: 16 KPEKVIRLTPHSDGSTLTILLQVCEVEGLQIKKDGKWTSVSPLRNAFIVNIGDMFEVLT- 74
KP+ + L H+D + +L Q +V GLQ+ KDG+W V P R++ +VN+GD EV+T
Sbjct: 167 KPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPXRHSIVVNLGDQLEVITN 226
Query: 75 ---ISINQWELPSASQERISISTFYKARYEE--HPASSLI---SEETPALFRRVTVEEYL 126
S+ + R S+++FY + +PA +L+ +EE ++ + ++Y
Sbjct: 227 GKYKSVXHRVIAQKDGARXSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYX 286
Query: 127 R 127
+
Sbjct: 287 K 287
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 66/131 (50%), Gaps = 8/131 (6%)
Query: 6 LAMNPISQMGKPEKVIRLTPHSDGSTLTILLQVCEVEGLQIKKDGKWTSVSPLRNAFIVN 65
+ +N + +PE + + H+D S LT +L V GLQ+ +GKW + + ++ +++
Sbjct: 211 MKINYYPKCPQPELALGVEAHTDVSALTFILHNM-VPGLQLFYEGKWVTAKCVPDSIVMH 269
Query: 66 IGDMFEVLT----ISINQWELPSASQERISISTFY---KARYEEHPASSLISEETPALFR 118
IGD E+L+ SI L + + RIS + F K + P ++S E+PA F
Sbjct: 270 IGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFP 329
Query: 119 RVTVEEYLRGR 129
T +++ +
Sbjct: 330 PRTFAQHIEHK 340
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 66/131 (50%), Gaps = 8/131 (6%)
Query: 6 LAMNPISQMGKPEKVIRLTPHSDGSTLTILLQVCEVEGLQIKKDGKWTSVSPLRNAFIVN 65
+ +N + +PE + + H+D S LT +L V GLQ+ +GKW + + ++ +++
Sbjct: 212 MKINYYPKCPQPELALGVEAHTDVSALTFILHNM-VPGLQLFYEGKWVTAKCVPDSIVMH 270
Query: 66 IGDMFEVLT----ISINQWELPSASQERISISTFY---KARYEEHPASSLISEETPALFR 118
IGD E+L+ SI L + + RIS + F K + P ++S E+PA F
Sbjct: 271 IGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEMVSVESPAKFP 330
Query: 119 RVTVEEYLRGR 129
T +++ +
Sbjct: 331 PRTFAQHIEHK 341
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 63/129 (48%), Gaps = 8/129 (6%)
Query: 8 MNPISQMGKPEKVIRLTPHSDGSTLTILLQVCEVEGLQIKKDGKWTSVSPLRNAFIVNIG 67
+N + +PE + + H+D S LT +L V GLQ+ +GKW + + ++ + +IG
Sbjct: 214 INYYPKCPQPELALGVEAHTDVSALTFILH-NXVPGLQLFYEGKWVTAKCVPDSIVXHIG 272
Query: 68 DMFEVLT----ISINQWELPSASQERISISTFY---KARYEEHPASSLISEETPALFRRV 120
D E+L+ SI L + + RIS + F K + P +S E+PA F
Sbjct: 273 DTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEXVSVESPAKFPPR 332
Query: 121 TVEEYLRGR 129
T +++ +
Sbjct: 333 TFAQHIEHK 341
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 45.4 bits (106), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 60/125 (48%), Gaps = 21/125 (16%)
Query: 21 IRLTPHSDGSTLTILLQVCEVEGLQI-KKDGKWTSVSPLRNAFIVNIGDMFEVLTISINQ 79
+R H D +T+T+LL E GL++ +DG+W ++P ++NIGD E LT ++
Sbjct: 186 VRAGAHGDINTITLLLG-AEEGGLEVLDRDGQWLPINPPPGCLVINIGDXLERLTNNV-- 242
Query: 80 WELPSASQ-------ERISISTF-------YKARYEEHPASSLISEETPALF-RRVTVEE 124
LPS ER + + + + YE + ++ E P + +T +E
Sbjct: 243 --LPSTVHRVVNPPPERRGVPRYSTPFFLHFASDYEIKTLQNCVTAENPDRYPESITADE 300
Query: 125 YLRGR 129
+L+ R
Sbjct: 301 FLQQR 305
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 49/119 (41%), Gaps = 22/119 (18%)
Query: 20 VIRLTPHSDGSTLTILLQVCEVEGLQIK-KDGKWTSVSPLRNAFIVNIGD--------MF 70
IR H D + +T+L E GLQ+K KDG W V I+NIGD F
Sbjct: 168 AIRAAAHEDINLITVLPTANE-PGLQVKAKDGSWLDVPSDFGNIIINIGDXLQEASDGYF 226
Query: 71 EVLTISINQWELPSASQERISISTFYKARYEEHPASSLISEETPALFRRVTVEEYLRGR 129
+ + E ++ RIS+ F HP S++ L R T + YL R
Sbjct: 227 PSTSHRVINPEGTDKTKSRISLPLFL------HPHPSVV------LSERYTADSYLXER 273
>pdb|1XXD|C Chain C, Crystal Structure Of The Fxia Catalytic Domain In
Complex With Mutated Ecotin
pdb|1XXD|D Chain D, Crystal Structure Of The Fxia Catalytic Domain In
Complex With Mutated Ecotin
Length = 142
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 3 LEPLAMNPISQMGKPEKVIRLTPHSDGSTLTILL---QVCEVE 42
LE +A P ++ G +VI+LTP D STL + L Q EV+
Sbjct: 7 LEKIAPYPQAEKGMKRQVIQLTPQEDESTLKVELLIGQTLEVD 49
>pdb|1XXF|C Chain C, Crystal Structure Of The Fxia Catalytic Domain In
Complex With Ecotin Mutant (Ecotinp)
pdb|1XXF|D Chain D, Crystal Structure Of The Fxia Catalytic Domain In
Complex With Ecotin Mutant (Ecotinp)
Length = 142
Score = 29.6 bits (65), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 3 LEPLAMNPISQMGKPEKVIRLTPHSDGSTLTILL---QVCEVE 42
LE +A P ++ G +VI+LTP D STL + L Q EV+
Sbjct: 7 LEKIAPYPQAEKGMKRQVIQLTPQEDESTLKVELLIGQTLEVD 49
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 29.6 bits (65), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 15/96 (15%)
Query: 6 LAMNPISQMGKPEK----VIRLTPHSDGSTLTILLQVCEVEGLQIKKDGKWTSVSPLRNA 61
L+ N +S++ +P + V R P + LL++CE EG++I +DG L
Sbjct: 137 LSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDG-------LEAL 189
Query: 62 FIVNIGDMFEVLTISINQWELPSASQERISISTFYK 97
++ GD + +IN + +A E + T Y+
Sbjct: 190 IYISGGDFRK----AINALQGAAAIGEVVDADTIYQ 221
>pdb|1ID5|I Chain I, Crystal Structure Of Bovine Thrombin Complex With
Protease Inhibitor Ecotin
pdb|1P0S|E Chain E, Crystal Structure Of Blood Coagulation Factor Xa In
Complex With Ecotin M84r
pdb|1XX9|C Chain C, Crystal Structure Of The Fxia Catalytic Domain In
Complex With Ecotinm84r
pdb|1XX9|D Chain D, Crystal Structure Of The Fxia Catalytic Domain In
Complex With Ecotinm84r
Length = 142
Score = 29.6 bits (65), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 3 LEPLAMNPISQMGKPEKVIRLTPHSDGSTLTILL---QVCEVE 42
LE +A P ++ G +VI+LTP D STL + L Q EV+
Sbjct: 7 LEKIAPYPQAEKGMKRQVIQLTPQEDESTLKVELLIGQTLEVD 49
>pdb|1EZS|A Chain A, Crystal Structure Of Ecotin Mutant M84r, W67a, G68a,
Y69a, D70a Bound To Rat Anionic Trypsin Ii
pdb|1EZS|B Chain B, Crystal Structure Of Ecotin Mutant M84r, W67a, G68a,
Y69a, D70a Bound To Rat Anionic Trypsin Ii
Length = 142
Score = 29.3 bits (64), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 3 LEPLAMNPISQMGKPEKVIRLTPHSDGSTLTILL---QVCEVE 42
LE +A P ++ G +VI+LTP D STL + L Q EV+
Sbjct: 7 LEKIAPYPQAEKGMKRQVIQLTPQEDESTLKVELLIGQTLEVD 49
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 29.3 bits (64), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 15/96 (15%)
Query: 6 LAMNPISQMGKPEK----VIRLTPHSDGSTLTILLQVCEVEGLQIKKDGKWTSVSPLRNA 61
L+ N +S++ +P + V R P + LL++CE EG++I +DG L
Sbjct: 137 LSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDG-------LEAL 189
Query: 62 FIVNIGDMFEVLTISINQWELPSASQERISISTFYK 97
++ GD + +IN + +A E + T Y+
Sbjct: 190 IYISGGDFRK----AINALQGAAAIGEVVDADTIYQ 221
>pdb|1ECZ|A Chain A, Protease Inhibitor Ecotin
pdb|1ECZ|B Chain B, Protease Inhibitor Ecotin
pdb|1AZZ|C Chain C, Fiddler Crab Collagenase Complexed To Ecotin
pdb|1AZZ|D Chain D, Fiddler Crab Collagenase Complexed To Ecotin
pdb|1N8O|E Chain E, Crystal Structure Of A Complex Between Bovine
Chymotrypsin And Ecotin
pdb|1ECY|A Chain A, Protease Inhibitor Ecotin
Length = 142
Score = 29.3 bits (64), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 3 LEPLAMNPISQMGKPEKVIRLTPHSDGSTLTILL---QVCEVE 42
LE +A P ++ G +VI+LTP D STL + L Q EV+
Sbjct: 7 LEKIAPYPQAEKGMKRQVIQLTPQEDESTLKVELLIGQTLEVD 49
>pdb|1SLX|A Chain A, Rat Anionic N143h, E151h Trypsin Complexed To A86h
Ecotin; Zinc-Bound
pdb|1SLW|A Chain A, Rat Anionic N143h, E151h Trypsin Complexed To A86h
Ecotin; Nickel- Bound
pdb|1SLV|A Chain A, Rat Anionic N143h, E151h Trypsin Complexed To A86h
Ecotin; Copper- Bound
pdb|1SLU|A Chain A, Rat Anionic N143h, E151h Trypsin Complexed To A86h
Ecotin
Length = 142
Score = 29.3 bits (64), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 3 LEPLAMNPISQMGKPEKVIRLTPHSDGSTLTILL---QVCEVE 42
LE +A P ++ G +VI+LTP D STL + L Q EV+
Sbjct: 7 LEKIAPYPQAEKGMKRQVIQLTPQEDESTLKVELLIGQTLEVD 49
>pdb|1IFG|A Chain A, Crystal Structure Of A Monomeric Form Of General
Protease Inhibitor, Ecotin In Absence Of A Protease
Length = 140
Score = 29.3 bits (64), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 3 LEPLAMNPISQMGKPEKVIRLTPHSDGSTLTILL---QVCEVE 42
LE +A P ++ G +VI+LTP D STL + L Q EV+
Sbjct: 2 LEKIAPYPQAEKGMKRQVIQLTPQEDESTLKVELLIGQTLEVD 44
>pdb|1EZU|A Chain A, Ecotin Y69f, D70p Bound To D102n Trypsin
pdb|1EZU|B Chain B, Ecotin Y69f, D70p Bound To D102n Trypsin
Length = 142
Score = 29.3 bits (64), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 3 LEPLAMNPISQMGKPEKVIRLTPHSDGSTLTILL---QVCEVE 42
LE +A P ++ G +VI+LTP D STL + L Q EV+
Sbjct: 7 LEKIAPYPQAEKGMKRQVIQLTPQEDESTLKVELLIGQTLEVD 49
>pdb|1FI8|C Chain C, Rat Granzyme B [n66q] Complexed To Ecotin [81-84 Iepd]
pdb|1FI8|E Chain E, Rat Granzyme B [n66q] Complexed To Ecotin [81-84 Iepd]
Length = 84
Score = 28.9 bits (63), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 3 LEPLAMNPISQMGKPEKVIRLTPHSDGSTLTILL---QVCEVE 42
LE +A P ++ G +VI+LTP D STL + L Q EV+
Sbjct: 7 LEKIAPYPQAEKGMKRQVIQLTPQEDESTLKVELLIGQTLEVD 49
>pdb|2YVX|A Chain A, Crystal Structure Of Magnesium Transporter Mgte
pdb|2YVX|B Chain B, Crystal Structure Of Magnesium Transporter Mgte
pdb|2YVX|C Chain C, Crystal Structure Of Magnesium Transporter Mgte
pdb|2YVX|D Chain D, Crystal Structure Of Magnesium Transporter Mgte
pdb|2ZY9|A Chain A, Improved Crystal Structure Of Magnesium Transporter Mgte
pdb|2ZY9|B Chain B, Improved Crystal Structure Of Magnesium Transporter Mgte
Length = 473
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 98 ARYEEHPASSLISEETPALFRRVTVEEYLR 127
ARYEE A L++ E A+ +TVEE LR
Sbjct: 150 ARYEEDEAGGLMTPEYVAVREGMTVEEVLR 179
>pdb|2YVY|A Chain A, Crystal Structure Of Magnesium Transporter Mgte Cytosolic
Domain, Mg2+ Bound Form
Length = 278
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 98 ARYEEHPASSLISEETPALFRRVTVEEYLR 127
ARYEE A L++ E A+ +TVEE LR
Sbjct: 130 ARYEEDEAGGLMTPEYVAVREGMTVEEVLR 159
>pdb|3IZB|E Chain E, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|B Chain B, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|B Chain B, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|C Chain C, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|C Chain C, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 254
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 21 IRLTPHSDGSTLTI------LLQVCEVEGLQIKKDGKWTSVSPLRNAFIVNIGDMFEVLT 74
+RL P GS + LLQ+ VE + + +GK ++ A V IG+ + LT
Sbjct: 167 VRLIPAPRGSGIVASPAVKKLLQLAGVEDVYTQSNGKTRTLENTLKAAFVAIGNTYGFLT 226
>pdb|3JYV|E Chain E, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 162
Score = 26.6 bits (57), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 21 IRLTPHSDGSTLTI------LLQVCEVEGLQIKKDGKWTSVSPLRNAFIVNIGDMFEVLT 74
+RL P GS + LLQ+ VE + + +GK ++ A V IG+ + LT
Sbjct: 93 VRLIPAPRGSGIVASPAVKKLLQLAGVEDVYTQSNGKTRTLENTLKAAFVAIGNTYGFLT 152
>pdb|3I2D|A Chain A, Crystal Structure Of S. Cerevisiae Sumo E3 Ligase Siz1
Length = 371
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
Query: 35 LLQVCE--VEGLQIKKDGKWTSV 55
+LQ C+ VE +++ DGKWT++
Sbjct: 312 ILQNCQKNVEQVELTSDGKWTAI 334
>pdb|1UBV|A Chain A, Structure Of Farnesyl Pyrophosphate Synthetase
pdb|1UBW|A Chain A, Structure Of Farnesyl Pyrophosphate Synthetase
pdb|1UBY|A Chain A, Structure Of Farnesyl Pyrophosphate Synthetase
Length = 367
Score = 25.4 bits (54), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 58 LRNAFIVNIGDMFEVLTISINQWELPSASQERISISTFYKARY 100
L+ A+ +G M +++T +++ +L S+ER YK +
Sbjct: 175 LQTAYQTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAF 217
>pdb|1UBX|A Chain A, Structure Of Farnesyl Pyrophosphate Synthetase
Length = 367
Score = 25.4 bits (54), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 58 LRNAFIVNIGDMFEVLTISINQWELPSASQERISISTFYKARY 100
L+ A+ +G M +++T +++ +L S+ER YK +
Sbjct: 175 LQTAYQTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAF 217
>pdb|1FPS|A Chain A, Crystal Structure Of Recombinant Farnesyl Diphosphate
Synthase At 2.6 Angstroms Resolution
Length = 348
Score = 25.4 bits (54), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 11/43 (25%), Positives = 23/43 (53%)
Query: 58 LRNAFIVNIGDMFEVLTISINQWELPSASQERISISTFYKARY 100
L+ A+ +G M +++T +++ +L S+ER YK +
Sbjct: 156 LQTAYQTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAF 198
>pdb|2YVZ|A Chain A, Crystal Structure Of Magnesium Transporter Mgte Cytosolic
Domain, Mg2+-Free Form
pdb|2YVZ|B Chain B, Crystal Structure Of Magnesium Transporter Mgte Cytosolic
Domain, Mg2+-Free Form
Length = 278
Score = 25.4 bits (54), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 98 ARYEEHPASSLISEETPALFRRVTVEEYLR 127
ARYEE A L + E A+ TVEE LR
Sbjct: 130 ARYEEDEAGGLXTPEYVAVREGXTVEEVLR 159
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,717,733
Number of Sequences: 62578
Number of extensions: 132242
Number of successful extensions: 295
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 270
Number of HSP's gapped (non-prelim): 27
length of query: 129
length of database: 14,973,337
effective HSP length: 88
effective length of query: 41
effective length of database: 9,466,473
effective search space: 388125393
effective search space used: 388125393
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)