Query 038622
Match_columns 587
No_of_seqs 701 out of 3347
Neff 12.1
Searched_HMMs 46136
Date Fri Mar 29 12:55:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038622.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038622hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 3.1E-65 6.7E-70 529.9 56.1 547 2-572 138-685 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 2.8E-64 6E-69 522.8 58.3 557 1-579 168-726 (857)
3 PLN03218 maturation of RBCL 1; 100.0 5.8E-62 1.2E-66 494.4 66.4 522 17-545 367-914 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 4.7E-62 1E-66 495.0 64.8 504 2-512 387-916 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 1.2E-56 2.5E-61 454.8 52.9 476 17-509 84-561 (697)
6 PLN03081 pentatricopeptide (PP 100.0 1.6E-55 3.5E-60 446.5 52.3 480 53-550 85-567 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 4.6E-40 1E-44 352.0 68.9 557 2-576 312-869 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 6.5E-40 1.4E-44 350.8 69.7 552 2-572 346-899 (899)
9 PRK11447 cellulose synthase su 100.0 8.6E-33 1.9E-37 294.3 66.9 554 2-572 45-739 (1157)
10 PRK11447 cellulose synthase su 100.0 1E-30 2.2E-35 278.6 62.4 536 23-576 31-703 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 8.5E-28 1.9E-32 244.1 62.6 550 2-581 61-714 (987)
12 PRK09782 bacteriophage N4 rece 100.0 2E-27 4.4E-32 241.4 60.3 525 30-581 54-680 (987)
13 KOG4626 O-linked N-acetylgluco 100.0 2.7E-29 5.7E-34 226.3 40.3 448 58-522 51-501 (966)
14 KOG4626 O-linked N-acetylgluco 100.0 2.9E-29 6.3E-34 226.0 36.9 444 92-554 50-500 (966)
15 KOG2002 TPR-containing nuclear 100.0 1.8E-27 3.9E-32 225.7 50.0 566 2-583 147-755 (1018)
16 KOG2002 TPR-containing nuclear 100.0 1.8E-26 4E-31 218.9 52.6 562 3-576 182-801 (1018)
17 TIGR00990 3a0801s09 mitochondr 100.0 7.1E-24 1.5E-28 212.6 52.3 432 93-544 130-575 (615)
18 TIGR00990 3a0801s09 mitochondr 100.0 3.1E-24 6.8E-29 215.1 48.4 434 127-579 129-577 (615)
19 PRK15174 Vi polysaccharide exp 100.0 1.8E-23 4E-28 208.5 45.1 363 171-544 16-385 (656)
20 KOG0495 HAT repeat protein [RN 99.9 8.2E-21 1.8E-25 173.0 56.1 546 2-578 268-885 (913)
21 PRK10049 pgaA outer membrane p 99.9 3E-22 6.4E-27 204.4 47.5 419 87-547 12-463 (765)
22 PRK15174 Vi polysaccharide exp 99.9 7.5E-22 1.6E-26 197.0 46.5 329 166-504 48-380 (656)
23 PRK10049 pgaA outer membrane p 99.9 2.8E-22 6.1E-27 204.5 44.0 423 122-580 12-463 (765)
24 PRK14574 hmsH outer membrane p 99.9 7.3E-20 1.6E-24 182.8 54.6 463 55-552 34-525 (822)
25 KOG1915 Cell cycle control pro 99.9 1.4E-19 3E-24 158.9 48.9 483 5-504 59-584 (677)
26 KOG0495 HAT repeat protein [RN 99.9 1.4E-18 3.1E-23 158.6 55.1 517 6-550 367-891 (913)
27 KOG2076 RNA polymerase III tra 99.9 1.5E-19 3.2E-24 171.4 50.0 567 2-576 156-852 (895)
28 PRK14574 hmsH outer membrane p 99.9 2.1E-19 4.5E-24 179.6 53.7 466 22-521 36-527 (822)
29 KOG2076 RNA polymerase III tra 99.9 6.3E-19 1.4E-23 167.2 51.4 557 17-579 136-775 (895)
30 PRK11788 tetratricopeptide rep 99.9 1.3E-21 2.8E-26 187.0 34.1 303 62-371 42-354 (389)
31 PRK11788 tetratricopeptide rep 99.9 2.4E-21 5.3E-26 185.1 35.5 194 167-363 42-242 (389)
32 KOG1915 Cell cycle control pro 99.9 8.9E-18 1.9E-22 147.7 48.4 484 41-541 60-586 (677)
33 KOG2003 TPR repeat-containing 99.9 7.3E-19 1.6E-23 153.7 35.8 279 239-525 428-708 (840)
34 KOG2003 TPR repeat-containing 99.9 1.3E-19 2.8E-24 158.3 29.7 475 17-503 198-720 (840)
35 KOG1173 Anaphase-promoting com 99.8 2.5E-16 5.4E-21 142.1 40.6 511 19-556 15-534 (611)
36 KOG0547 Translocase of outer m 99.8 1.8E-17 4E-22 146.4 32.2 218 347-572 338-565 (606)
37 KOG1155 Anaphase-promoting com 99.8 5E-16 1.1E-20 136.6 38.1 368 157-543 161-539 (559)
38 KOG0547 Translocase of outer m 99.8 3.7E-17 8.1E-22 144.5 30.7 425 22-468 117-565 (606)
39 KOG1126 DNA-binding cell divis 99.8 5.2E-18 1.1E-22 156.1 22.7 290 279-580 333-627 (638)
40 KOG1173 Anaphase-promoting com 99.8 2.6E-15 5.6E-20 135.6 38.5 473 10-515 41-526 (611)
41 KOG1126 DNA-binding cell divis 99.8 1.4E-17 3E-22 153.3 23.9 287 245-545 334-625 (638)
42 KOG1155 Anaphase-promoting com 99.8 5.7E-14 1.2E-18 123.8 43.6 365 120-504 159-535 (559)
43 TIGR00540 hemY_coli hemY prote 99.8 1.5E-15 3.3E-20 144.0 34.7 293 241-539 95-398 (409)
44 PRK10747 putative protoheme IX 99.8 3.3E-15 7.2E-20 140.9 35.8 286 242-541 96-391 (398)
45 PF13429 TPR_15: Tetratricopep 99.8 1.3E-18 2.9E-23 156.9 11.5 261 305-572 13-276 (280)
46 PF13429 TPR_15: Tetratricopep 99.8 1.8E-18 3.9E-23 156.0 12.3 262 270-539 13-276 (280)
47 TIGR00540 hemY_coli hemY prote 99.8 1.3E-15 2.8E-20 144.5 31.5 293 274-573 93-399 (409)
48 KOG3785 Uncharacterized conser 99.8 2.7E-14 5.8E-19 121.5 34.7 458 62-548 29-498 (557)
49 KOG3785 Uncharacterized conser 99.8 4.2E-14 9.1E-19 120.3 35.5 453 27-514 29-497 (557)
50 KOG2047 mRNA splicing factor [ 99.8 1.8E-12 4E-17 119.2 47.4 522 21-559 103-709 (835)
51 KOG4422 Uncharacterized conser 99.8 9.1E-13 2E-17 115.2 43.2 322 22-364 118-462 (625)
52 KOG2047 mRNA splicing factor [ 99.8 6.4E-12 1.4E-16 115.7 50.4 166 17-188 24-197 (835)
53 KOG4422 Uncharacterized conser 99.8 6.5E-13 1.4E-17 116.1 41.3 425 58-506 119-591 (625)
54 PRK10747 putative protoheme IX 99.7 2.5E-14 5.5E-19 134.9 35.5 284 102-398 96-389 (398)
55 COG2956 Predicted N-acetylgluc 99.7 2.2E-14 4.7E-19 120.6 30.6 297 240-544 45-351 (389)
56 KOG1156 N-terminal acetyltrans 99.7 1.4E-12 3.1E-17 120.2 43.6 154 67-224 19-172 (700)
57 KOG1174 Anaphase-promoting com 99.7 1.5E-13 3.2E-18 119.5 35.2 274 261-544 228-504 (564)
58 KOG4162 Predicted calmodulin-b 99.7 3.7E-13 8.1E-18 126.4 39.5 205 122-328 320-541 (799)
59 COG2956 Predicted N-acetylgluc 99.7 4.5E-14 9.7E-19 118.7 28.6 233 22-259 38-278 (389)
60 KOG4162 Predicted calmodulin-b 99.7 4.3E-12 9.2E-17 119.5 42.4 462 65-546 294-789 (799)
61 KOG1174 Anaphase-promoting com 99.7 5.6E-12 1.2E-16 109.8 39.8 293 277-577 208-504 (564)
62 COG3071 HemY Uncharacterized e 99.7 4.3E-13 9.4E-18 116.5 32.8 284 244-538 98-388 (400)
63 KOG1156 N-terminal acetyltrans 99.7 1.6E-11 3.5E-16 113.4 43.3 478 21-539 9-510 (700)
64 COG3071 HemY Uncharacterized e 99.7 1.2E-12 2.5E-17 113.9 33.7 286 208-504 97-389 (400)
65 KOG1129 TPR repeat-containing 99.7 3E-14 6.4E-19 119.8 20.2 237 301-544 224-462 (478)
66 KOG1127 TPR repeat-containing 99.7 3.4E-12 7.3E-17 123.2 36.1 534 21-579 493-1073(1238)
67 KOG1129 TPR repeat-containing 99.7 2.6E-14 5.5E-19 120.2 19.3 230 94-329 227-458 (478)
68 KOG0548 Molecular co-chaperone 99.6 1.2E-12 2.5E-17 118.3 29.6 236 303-555 227-471 (539)
69 KOG2376 Signal recognition par 99.6 7.5E-11 1.6E-15 107.9 40.6 454 25-502 17-517 (652)
70 PF12569 NARP1: NMDA receptor- 99.6 7.6E-11 1.6E-15 112.2 41.9 291 63-363 12-333 (517)
71 KOG2376 Signal recognition par 99.6 1E-10 2.2E-15 107.0 40.5 460 57-539 14-519 (652)
72 PRK12370 invasion protein regu 99.6 6E-13 1.3E-17 131.4 27.0 269 17-295 253-536 (553)
73 PRK12370 invasion protein regu 99.6 2.9E-12 6.2E-17 126.6 29.1 270 52-330 253-536 (553)
74 KOG0548 Molecular co-chaperone 99.6 1.9E-11 4.1E-16 110.6 31.3 443 27-523 9-472 (539)
75 PF12569 NARP1: NMDA receptor- 99.6 2.1E-10 4.5E-15 109.2 39.8 297 93-399 7-334 (517)
76 TIGR02521 type_IV_pilW type IV 99.6 3.9E-12 8.3E-17 112.6 26.5 199 336-539 32-231 (234)
77 TIGR02521 type_IV_pilW type IV 99.6 2.4E-12 5.3E-17 113.9 24.4 200 369-573 30-232 (234)
78 KOG1127 TPR repeat-containing 99.5 2E-10 4.4E-15 111.3 36.8 276 241-524 827-1122(1238)
79 COG3063 PilF Tfp pilus assembl 99.5 1.7E-11 3.7E-16 98.6 24.1 200 56-259 36-236 (250)
80 KOG0624 dsRNA-activated protei 99.5 1.5E-10 3.3E-15 98.6 30.8 305 232-546 40-376 (504)
81 KOG4318 Bicoid mRNA stability 99.5 2E-10 4.3E-15 110.0 34.5 254 6-280 11-286 (1088)
82 COG3063 PilF Tfp pilus assembl 99.5 3.2E-11 7E-16 97.1 24.3 203 337-544 37-240 (250)
83 KOG0624 dsRNA-activated protei 99.5 1.3E-10 2.7E-15 99.1 27.9 309 263-581 36-378 (504)
84 KOG3617 WD40 and TPR repeat-co 99.5 4.2E-09 9.1E-14 100.3 40.5 491 17-545 723-1364(1416)
85 KOG4340 Uncharacterized conser 99.5 7E-11 1.5E-15 98.6 24.3 203 338-548 244-451 (459)
86 KOG4340 Uncharacterized conser 99.5 1.5E-10 3.2E-15 96.7 26.1 317 22-360 12-335 (459)
87 PRK11189 lipoprotein NlpI; Pro 99.5 9.4E-11 2E-15 105.9 26.3 222 30-260 36-266 (296)
88 PRK11189 lipoprotein NlpI; Pro 99.4 1.5E-10 3.2E-15 104.6 26.9 225 245-479 41-274 (296)
89 KOG1840 Kinesin light chain [C 99.4 1E-10 2.2E-15 109.8 26.1 237 302-539 201-478 (508)
90 KOG1125 TPR repeat-containing 99.4 3.1E-11 6.6E-16 110.3 19.4 227 306-543 291-530 (579)
91 KOG1840 Kinesin light chain [C 99.4 3.7E-10 8E-15 106.1 26.6 237 266-503 200-477 (508)
92 KOG0985 Vesicle coat protein c 99.4 2.6E-07 5.6E-12 90.5 45.7 535 6-573 593-1249(1666)
93 KOG4318 Bicoid mRNA stability 99.4 3.7E-09 8.1E-14 101.6 32.2 253 41-315 11-286 (1088)
94 KOG1125 TPR repeat-containing 99.3 1.3E-10 2.9E-15 106.2 18.7 229 340-576 290-530 (579)
95 KOG3617 WD40 and TPR repeat-co 99.3 2E-08 4.4E-13 95.9 33.6 413 53-536 724-1170(1416)
96 cd05804 StaR_like StaR_like; a 99.3 2.7E-08 5.8E-13 94.0 35.4 200 340-541 119-337 (355)
97 cd05804 StaR_like StaR_like; a 99.3 1.7E-08 3.6E-13 95.4 33.9 199 55-258 6-214 (355)
98 KOG3616 Selective LIM binding 99.3 4.3E-08 9.3E-13 92.6 33.0 62 485-550 973-1034(1636)
99 KOG0985 Vesicle coat protein c 99.3 1.1E-06 2.3E-11 86.4 41.9 262 265-565 1104-1375(1666)
100 KOG3616 Selective LIM binding 99.3 2.1E-07 4.6E-12 88.1 35.9 165 277-466 744-908 (1636)
101 PF04733 Coatomer_E: Coatomer 99.3 7E-10 1.5E-14 98.4 18.8 252 275-544 11-269 (290)
102 PLN02789 farnesyltranstransfer 99.2 2.5E-08 5.5E-13 89.8 26.9 223 313-542 50-304 (320)
103 PRK04841 transcriptional regul 99.2 1.3E-07 2.7E-12 101.4 37.2 340 203-544 382-764 (903)
104 PRK04841 transcriptional regul 99.2 2.4E-07 5.2E-12 99.3 38.3 58 411-468 697-759 (903)
105 PRK10370 formate-dependent nit 99.2 1.1E-08 2.4E-13 85.7 21.9 158 378-551 24-184 (198)
106 PF04733 Coatomer_E: Coatomer 99.2 1.7E-09 3.6E-14 96.0 16.8 257 238-512 9-270 (290)
107 PLN02789 farnesyltranstransfer 99.2 1.6E-07 3.5E-12 84.6 29.2 224 278-509 50-304 (320)
108 KOG1914 mRNA cleavage and poly 99.1 5E-06 1.1E-10 76.3 41.3 429 12-468 13-500 (656)
109 KOG2053 Mitochondrial inherita 99.1 9.9E-06 2.1E-10 79.1 42.5 486 31-535 20-565 (932)
110 PRK15359 type III secretion sy 99.1 4.4E-09 9.6E-14 83.3 15.9 114 425-546 13-127 (144)
111 KOG1128 Uncharacterized conser 99.1 1.7E-08 3.6E-13 95.4 21.5 223 332-576 395-619 (777)
112 TIGR03302 OM_YfiO outer membra 99.1 3.8E-09 8.3E-14 92.9 16.4 185 369-574 32-233 (235)
113 PRK10370 formate-dependent nit 99.1 4.4E-09 9.6E-14 88.1 15.7 152 412-579 23-179 (198)
114 KOG3060 Uncharacterized conser 99.1 1.3E-07 2.9E-12 77.7 23.0 188 313-504 25-219 (289)
115 COG5010 TadD Flp pilus assembl 99.1 1.5E-08 3.2E-13 84.0 17.7 158 374-536 70-227 (257)
116 TIGR03302 OM_YfiO outer membra 99.1 3.1E-08 6.7E-13 87.2 20.8 189 332-542 30-234 (235)
117 KOG1128 Uncharacterized conser 99.1 2.2E-08 4.7E-13 94.6 19.3 237 261-519 394-631 (777)
118 COG5010 TadD Flp pilus assembl 99.0 8.3E-08 1.8E-12 79.7 19.4 165 52-221 64-228 (257)
119 KOG3060 Uncharacterized conser 99.0 1.1E-07 2.5E-12 78.1 19.9 206 347-558 24-239 (289)
120 PF13041 PPR_2: PPR repeat fam 99.0 7.3E-10 1.6E-14 69.2 5.6 50 18-67 1-50 (50)
121 PRK15179 Vi polysaccharide bio 99.0 3.5E-07 7.6E-12 91.1 26.4 135 404-543 85-220 (694)
122 PRK15359 type III secretion sy 99.0 3.6E-08 7.9E-13 78.1 15.3 123 391-522 14-137 (144)
123 KOG1070 rRNA processing protei 99.0 2.9E-07 6.4E-12 93.3 24.5 209 52-264 1455-1668(1710)
124 PRK14720 transcript cleavage f 99.0 1.7E-07 3.6E-12 94.2 22.8 169 264-469 30-198 (906)
125 KOG1914 mRNA cleavage and poly 99.0 3.2E-05 6.9E-10 71.3 43.0 188 351-542 309-503 (656)
126 KOG3081 Vesicle coat complex C 99.0 2.7E-06 5.9E-11 70.8 25.2 106 380-490 147-256 (299)
127 KOG1070 rRNA processing protei 98.9 7.4E-07 1.6E-11 90.6 25.5 244 76-325 1445-1696(1710)
128 PRK15179 Vi polysaccharide bio 98.9 1.7E-07 3.6E-12 93.4 20.7 135 436-574 82-218 (694)
129 PF13041 PPR_2: PPR repeat fam 98.9 3.5E-09 7.6E-14 66.1 5.5 49 123-171 1-49 (50)
130 TIGR02552 LcrH_SycD type III s 98.9 7.6E-08 1.7E-12 76.2 14.6 116 427-546 5-120 (135)
131 PRK14720 transcript cleavage f 98.9 1.3E-06 2.7E-11 88.1 25.1 234 53-311 29-268 (906)
132 KOG3081 Vesicle coat complex C 98.9 6.2E-06 1.4E-10 68.7 24.7 255 273-545 16-276 (299)
133 KOG0550 Molecular chaperone (D 98.8 1.1E-06 2.4E-11 77.7 18.5 292 233-552 52-362 (486)
134 TIGR02552 LcrH_SycD type III s 98.7 4.6E-07 1E-11 71.7 13.9 97 21-119 18-114 (135)
135 KOG2053 Mitochondrial inherita 98.7 0.00038 8.2E-09 68.5 49.2 217 3-226 27-257 (932)
136 KOG0553 TPR repeat-containing 98.7 2.2E-07 4.7E-12 78.9 11.6 97 447-547 88-185 (304)
137 PRK15363 pathogenicity island 98.7 4.5E-07 9.8E-12 70.1 11.9 103 440-546 35-138 (157)
138 PF09976 TPR_21: Tetratricopep 98.7 3.9E-07 8.6E-12 72.6 12.0 126 407-537 14-144 (145)
139 PRK15363 pathogenicity island 98.7 6.8E-07 1.5E-11 69.2 12.6 94 408-504 38-131 (157)
140 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 1.5E-06 3.3E-11 79.9 15.9 126 408-541 172-298 (395)
141 COG4783 Putative Zn-dependent 98.6 1.8E-05 4E-10 72.1 22.2 123 128-253 309-431 (484)
142 COG4783 Putative Zn-dependent 98.6 3.9E-05 8.4E-10 70.1 24.1 147 375-543 311-457 (484)
143 COG4700 Uncharacterized protei 98.6 4.7E-06 1E-10 65.2 15.7 154 380-538 66-220 (251)
144 KOG0550 Molecular chaperone (D 98.6 3E-05 6.4E-10 69.0 22.4 268 58-329 52-350 (486)
145 PF09976 TPR_21: Tetratricopep 98.6 3.1E-06 6.7E-11 67.5 14.8 116 453-570 24-144 (145)
146 COG4235 Cytochrome c biogenesi 98.6 6.4E-06 1.4E-10 70.7 16.8 130 421-554 138-270 (287)
147 PLN03088 SGT1, suppressor of 98.5 2.2E-06 4.8E-11 79.5 14.5 99 445-547 7-106 (356)
148 PF12854 PPR_1: PPR repeat 98.5 2E-07 4.4E-12 51.9 4.1 34 14-47 1-34 (34)
149 KOG0553 TPR repeat-containing 98.5 4.6E-07 1E-11 76.9 8.1 100 480-582 86-187 (304)
150 TIGR02795 tol_pal_ybgF tol-pal 98.5 4.2E-06 9E-11 64.6 12.8 103 441-545 3-110 (119)
151 PF12895 Apc3: Anaphase-promot 98.5 1.2E-07 2.5E-12 67.4 2.8 79 454-536 3-83 (84)
152 KOG1130 Predicted G-alpha GTPa 98.4 3.3E-06 7.1E-11 74.7 11.8 132 407-539 197-343 (639)
153 cd00189 TPR Tetratricopeptide 98.4 5.3E-06 1.1E-10 61.2 11.1 97 443-542 3-99 (100)
154 COG3898 Uncharacterized membra 98.4 0.0015 3.2E-08 58.2 31.9 287 242-544 96-396 (531)
155 TIGR02795 tol_pal_ybgF tol-pal 98.4 3.8E-06 8.3E-11 64.8 10.1 101 477-580 4-112 (119)
156 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 1.1E-05 2.4E-10 74.4 14.4 129 55-189 169-297 (395)
157 COG4700 Uncharacterized protei 98.4 0.00018 3.8E-09 56.7 18.1 134 367-503 86-220 (251)
158 KOG1130 Predicted G-alpha GTPa 98.3 2.6E-06 5.5E-11 75.4 8.4 284 272-574 24-345 (639)
159 PF12895 Apc3: Anaphase-promot 98.3 1.3E-06 2.9E-11 61.9 5.7 80 488-569 2-83 (84)
160 KOG2041 WD40 repeat protein [G 98.3 0.0036 7.9E-08 60.1 29.2 206 17-256 689-904 (1189)
161 PRK10153 DNA-binding transcrip 98.3 5.1E-05 1.1E-09 73.6 18.1 142 403-548 335-490 (517)
162 PF07079 DUF1347: Protein of u 98.3 0.0027 5.9E-08 57.8 40.1 137 30-171 16-178 (549)
163 PF13414 TPR_11: TPR repeat; P 98.3 3E-06 6.4E-11 57.6 6.7 65 475-542 3-69 (69)
164 PF07079 DUF1347: Protein of u 98.3 0.0028 6.1E-08 57.7 42.6 445 65-539 16-523 (549)
165 PLN03088 SGT1, suppressor of 98.3 3.2E-05 6.9E-10 71.9 15.4 104 412-520 9-113 (356)
166 PF13432 TPR_16: Tetratricopep 98.3 3.3E-06 7.1E-11 56.5 6.5 61 481-544 3-64 (65)
167 cd00189 TPR Tetratricopeptide 98.3 1.1E-05 2.3E-10 59.5 10.1 95 478-575 3-99 (100)
168 PRK02603 photosystem I assembl 98.2 3.5E-05 7.5E-10 63.6 13.4 100 442-544 37-153 (172)
169 PF05843 Suf: Suppressor of fo 98.2 1.3E-05 2.8E-10 71.7 11.4 135 407-545 3-141 (280)
170 PF12854 PPR_1: PPR repeat 98.2 2.3E-06 4.9E-11 47.7 3.8 32 120-151 2-33 (34)
171 PF13414 TPR_11: TPR repeat; P 98.2 2.6E-06 5.7E-11 57.8 4.7 66 510-575 2-69 (69)
172 PRK15331 chaperone protein Sic 98.2 7.5E-05 1.6E-09 58.4 12.8 96 442-540 39-134 (165)
173 PRK10866 outer membrane biogen 98.1 0.00073 1.6E-08 58.9 19.5 185 53-257 30-239 (243)
174 PF05843 Suf: Suppressor of fo 98.1 5.8E-05 1.3E-09 67.5 13.1 131 21-154 2-136 (280)
175 PF13432 TPR_16: Tetratricopep 98.1 3E-06 6.5E-11 56.6 3.8 61 516-576 2-63 (65)
176 CHL00033 ycf3 photosystem I as 98.1 7.7E-05 1.7E-09 61.4 12.5 101 441-544 36-153 (168)
177 COG4235 Cytochrome c biogenesi 98.1 0.00026 5.6E-09 61.1 15.5 116 36-154 138-256 (287)
178 PF12688 TPR_5: Tetratrico pep 98.1 0.00018 4E-09 54.0 12.8 95 443-539 4-103 (120)
179 PRK10153 DNA-binding transcrip 98.1 8.8E-05 1.9E-09 72.0 14.1 143 436-579 333-488 (517)
180 PRK10803 tol-pal system protei 98.1 2.9E-05 6.3E-10 67.9 9.6 104 440-545 142-251 (263)
181 CHL00033 ycf3 photosystem I as 98.0 0.0001 2.2E-09 60.6 12.1 95 405-501 35-138 (168)
182 COG3898 Uncharacterized membra 98.0 0.0086 1.9E-07 53.6 30.6 249 242-505 132-392 (531)
183 PF14938 SNAP: Soluble NSF att 98.0 8E-05 1.7E-09 67.1 12.1 170 372-544 37-229 (282)
184 KOG2041 WD40 repeat protein [G 98.0 0.016 3.4E-07 56.0 27.9 187 35-253 678-875 (1189)
185 PRK10803 tol-pal system protei 98.0 0.00016 3.5E-09 63.3 13.3 82 492-575 159-248 (263)
186 PF14559 TPR_19: Tetratricopep 98.0 9E-06 1.9E-10 55.0 4.2 56 486-544 2-58 (68)
187 PRK02603 photosystem I assembl 98.0 0.00045 9.8E-09 57.0 15.1 92 54-146 34-127 (172)
188 PRK15331 chaperone protein Sic 98.0 7.8E-05 1.7E-09 58.3 9.5 92 479-573 41-134 (165)
189 PRK10866 outer membrane biogen 98.0 0.0025 5.4E-08 55.6 20.0 61 268-329 35-98 (243)
190 KOG1258 mRNA processing protei 98.0 0.017 3.8E-07 55.0 32.9 135 18-154 43-180 (577)
191 PF14938 SNAP: Soluble NSF att 98.0 0.00014 3E-09 65.5 12.6 200 335-539 35-262 (282)
192 COG5107 RNA14 Pre-mRNA 3'-end 98.0 0.014 3E-07 53.4 37.2 432 17-469 39-531 (660)
193 KOG1258 mRNA processing protei 97.9 0.02 4.4E-07 54.6 34.4 118 105-224 60-180 (577)
194 PF12688 TPR_5: Tetratrico pep 97.9 0.0011 2.4E-08 49.9 14.6 94 408-503 4-102 (120)
195 COG5107 RNA14 Pre-mRNA 3'-end 97.9 0.016 3.5E-07 52.9 37.6 459 41-544 30-535 (660)
196 PF13525 YfiO: Outer membrane 97.9 0.0025 5.4E-08 54.1 18.5 48 516-563 146-197 (203)
197 PRK11906 transcriptional regul 97.9 0.00048 1E-08 63.6 14.8 84 457-544 321-405 (458)
198 PF13371 TPR_9: Tetratricopept 97.9 6.1E-05 1.3E-09 51.7 6.7 60 483-545 3-63 (73)
199 PF14559 TPR_19: Tetratricopep 97.9 1.7E-05 3.7E-10 53.6 3.7 61 521-581 1-62 (68)
200 KOG0543 FKBP-type peptidyl-pro 97.9 0.00024 5.2E-09 63.7 11.7 96 477-574 259-356 (397)
201 COG1729 Uncharacterized protei 97.8 0.00064 1.4E-08 58.0 12.6 103 443-546 144-250 (262)
202 KOG2796 Uncharacterized conser 97.8 0.019 4.1E-07 48.5 23.7 131 373-505 180-315 (366)
203 TIGR00756 PPR pentatricopeptid 97.7 4.4E-05 9.6E-10 43.3 3.6 33 22-54 2-34 (35)
204 PF13525 YfiO: Outer membrane 97.7 0.0054 1.2E-07 52.1 17.5 61 269-329 9-71 (203)
205 PRK11906 transcriptional regul 97.7 0.006 1.3E-07 56.6 18.5 132 419-560 318-452 (458)
206 PF13512 TPR_18: Tetratricopep 97.7 0.0015 3.2E-08 50.1 12.3 93 484-577 19-132 (142)
207 PF13371 TPR_9: Tetratricopept 97.7 9.1E-05 2E-09 50.9 5.1 66 517-582 1-67 (73)
208 COG1729 Uncharacterized protei 97.7 0.00047 1E-08 58.8 10.2 99 477-578 144-249 (262)
209 PF13812 PPR_3: Pentatricopept 97.6 6.8E-05 1.5E-09 42.1 3.3 33 21-53 2-34 (34)
210 PF13281 DUF4071: Domain of un 97.6 0.013 2.8E-07 53.6 19.2 166 376-543 147-337 (374)
211 KOG0543 FKBP-type peptidyl-pro 97.6 0.0021 4.6E-08 57.9 13.6 100 441-544 258-359 (397)
212 KOG2796 Uncharacterized conser 97.6 0.033 7.2E-07 47.1 22.8 132 337-469 179-315 (366)
213 TIGR00756 PPR pentatricopeptid 97.6 0.00018 3.8E-09 40.7 4.5 33 127-159 2-34 (35)
214 COG0457 NrfG FOG: TPR repeat [ 97.6 0.051 1.1E-06 48.1 25.9 226 313-543 36-268 (291)
215 PF10037 MRP-S27: Mitochondria 97.6 0.0018 3.8E-08 60.5 13.0 123 84-206 60-184 (429)
216 PF13512 TPR_18: Tetratricopep 97.5 0.0061 1.3E-07 46.8 12.8 60 410-469 15-76 (142)
217 PF10037 MRP-S27: Mitochondria 97.5 0.0034 7.5E-08 58.6 13.8 122 261-382 62-185 (429)
218 PF13812 PPR_3: Pentatricopept 97.5 0.00025 5.5E-09 39.7 4.1 31 127-157 3-33 (34)
219 KOG1538 Uncharacterized conser 97.4 0.052 1.1E-06 52.1 19.8 86 302-398 749-845 (1081)
220 KOG4234 TPR repeat-containing 97.4 0.0053 1.2E-07 49.3 11.4 95 447-545 102-202 (271)
221 KOG1941 Acetylcholine receptor 97.3 0.018 3.8E-07 51.1 15.5 57 376-432 128-189 (518)
222 PF01535 PPR: PPR repeat; Int 97.3 0.00025 5.3E-09 38.7 2.8 30 21-50 1-30 (31)
223 PLN03098 LPA1 LOW PSII ACCUMUL 97.3 0.00049 1.1E-08 63.4 6.1 67 472-541 72-142 (453)
224 PF13424 TPR_12: Tetratricopep 97.3 0.0013 2.7E-08 45.8 7.1 62 477-539 7-74 (78)
225 COG0457 NrfG FOG: TPR repeat [ 97.3 0.11 2.4E-06 45.9 29.9 225 278-505 36-265 (291)
226 PF13281 DUF4071: Domain of un 97.3 0.14 3.1E-06 47.0 21.5 26 444-469 309-334 (374)
227 COG4105 ComL DNA uptake lipopr 97.3 0.093 2E-06 44.8 19.7 62 481-544 173-237 (254)
228 KOG4555 TPR repeat-containing 97.3 0.0072 1.6E-07 44.8 10.5 94 447-543 50-147 (175)
229 PLN03098 LPA1 LOW PSII ACCUMUL 97.3 0.0019 4E-08 59.8 9.1 65 439-505 74-141 (453)
230 PF13428 TPR_14: Tetratricopep 97.2 0.0005 1.1E-08 41.2 3.8 34 512-545 2-35 (44)
231 KOG1585 Protein required for f 97.2 0.077 1.7E-06 44.5 17.0 207 266-500 32-251 (308)
232 PF03704 BTAD: Bacterial trans 97.2 0.023 5E-07 45.4 14.1 68 444-513 66-138 (146)
233 COG3118 Thioredoxin domain-con 97.2 0.059 1.3E-06 46.8 16.7 149 58-209 137-286 (304)
234 PF10300 DUF3808: Protein of u 97.2 0.013 2.9E-07 56.7 14.5 116 454-572 247-375 (468)
235 PF08579 RPM2: Mitochondrial r 97.1 0.0082 1.8E-07 43.5 9.5 76 61-136 31-115 (120)
236 KOG2610 Uncharacterized conser 97.1 0.0088 1.9E-07 52.3 11.3 158 380-541 113-277 (491)
237 COG3118 Thioredoxin domain-con 97.1 0.05 1.1E-06 47.3 15.6 171 10-183 124-295 (304)
238 PF08579 RPM2: Mitochondrial r 97.1 0.0079 1.7E-07 43.5 8.8 78 95-172 30-116 (120)
239 KOG1941 Acetylcholine receptor 97.1 0.086 1.9E-06 47.0 16.7 229 239-468 15-274 (518)
240 PF13424 TPR_12: Tetratricopep 97.1 0.0018 3.8E-08 45.1 5.6 62 407-468 7-74 (78)
241 KOG4234 TPR repeat-containing 97.0 0.0044 9.6E-08 49.8 8.1 97 481-579 101-203 (271)
242 PF01535 PPR: PPR repeat; Int 96.9 0.0015 3.3E-08 35.5 3.6 28 127-154 2-29 (31)
243 PF07719 TPR_2: Tetratricopept 96.9 0.0025 5.5E-08 35.5 4.5 33 512-544 2-34 (34)
244 KOG4555 TPR repeat-containing 96.9 0.014 3.1E-07 43.2 9.2 93 482-577 50-148 (175)
245 COG4785 NlpI Lipoprotein NlpI, 96.9 0.18 4E-06 41.5 16.5 186 347-544 77-270 (297)
246 PF10300 DUF3808: Protein of u 96.9 0.073 1.6E-06 51.7 16.9 119 419-541 247-377 (468)
247 COG4105 ComL DNA uptake lipopr 96.9 0.24 5.1E-06 42.4 21.9 82 55-136 34-117 (254)
248 KOG1550 Extracellular protein 96.9 0.59 1.3E-05 46.8 27.6 276 246-543 228-541 (552)
249 KOG1586 Protein required for f 96.9 0.22 4.7E-06 41.7 16.7 89 454-543 128-227 (288)
250 COG2976 Uncharacterized protei 96.8 0.022 4.8E-07 46.0 10.4 92 446-542 95-190 (207)
251 COG4785 NlpI Lipoprotein NlpI, 96.8 0.14 3.1E-06 42.1 14.9 187 28-225 73-267 (297)
252 KOG1538 Uncharacterized conser 96.8 0.11 2.3E-06 50.2 16.3 97 407-539 749-845 (1081)
253 PF13431 TPR_17: Tetratricopep 96.8 0.0013 2.8E-08 36.5 2.6 31 499-531 2-33 (34)
254 PF03704 BTAD: Bacterial trans 96.8 0.02 4.4E-07 45.7 10.3 71 407-478 64-139 (146)
255 PF04184 ST7: ST7 protein; In 96.7 0.12 2.6E-06 48.5 15.6 63 440-504 259-323 (539)
256 COG4649 Uncharacterized protei 96.7 0.22 4.7E-06 39.5 15.0 126 415-542 68-198 (221)
257 PF00515 TPR_1: Tetratricopept 96.7 0.0048 1E-07 34.4 4.4 32 512-543 2-33 (34)
258 KOG2280 Vacuolar assembly/sort 96.7 0.78 1.7E-05 45.5 27.7 110 337-465 686-795 (829)
259 KOG1585 Protein required for f 96.7 0.3 6.5E-06 41.2 16.0 204 198-428 34-250 (308)
260 PF04840 Vps16_C: Vps16, C-ter 96.5 0.66 1.4E-05 42.4 29.1 104 234-357 181-284 (319)
261 PF13428 TPR_14: Tetratricopep 96.5 0.0099 2.1E-07 35.5 5.0 24 445-468 6-29 (44)
262 PF04184 ST7: ST7 protein; In 96.4 0.52 1.1E-05 44.5 17.6 152 25-190 173-325 (539)
263 KOG2396 HAT (Half-A-TPR) repea 96.4 0.89 1.9E-05 42.9 40.8 95 442-539 462-558 (568)
264 PF08631 SPO22: Meiosis protei 96.3 0.76 1.7E-05 41.4 26.8 160 241-403 4-190 (278)
265 PF06239 ECSIT: Evolutionarily 96.3 0.13 2.9E-06 42.6 12.0 68 209-276 66-149 (228)
266 PF08631 SPO22: Meiosis protei 96.3 0.79 1.7E-05 41.3 25.9 191 345-538 45-273 (278)
267 COG4649 Uncharacterized protei 96.2 0.31 6.7E-06 38.6 13.0 53 171-223 143-195 (221)
268 KOG2610 Uncharacterized conser 96.2 0.15 3.2E-06 45.0 12.5 159 28-188 111-275 (491)
269 COG0790 FOG: TPR repeat, SEL1 96.2 0.97 2.1E-05 41.3 19.4 184 346-542 52-268 (292)
270 PF02259 FAT: FAT domain; Int 96.2 1.2 2.6E-05 42.1 23.8 65 369-433 145-212 (352)
271 PF06239 ECSIT: Evolutionarily 96.1 0.26 5.7E-06 41.0 12.8 32 352-383 120-151 (228)
272 PF13174 TPR_6: Tetratricopept 96.1 0.01 2.2E-07 32.7 3.4 31 513-543 2-32 (33)
273 PF06552 TOM20_plant: Plant sp 96.0 0.037 8E-07 44.2 7.4 53 493-547 52-116 (186)
274 COG2976 Uncharacterized protei 95.9 0.72 1.6E-05 37.6 14.2 91 377-469 96-188 (207)
275 PF04053 Coatomer_WDAD: Coatom 95.9 0.3 6.5E-06 46.8 14.3 105 128-259 298-402 (443)
276 PRK15180 Vi polysaccharide bio 95.9 1.6 3.4E-05 41.0 26.7 122 66-190 300-421 (831)
277 PF13176 TPR_7: Tetratricopept 95.8 0.015 3.3E-07 32.8 3.4 27 513-539 1-27 (36)
278 KOG4648 Uncharacterized conser 95.8 0.028 6.1E-07 49.4 6.5 95 411-510 103-197 (536)
279 PF02259 FAT: FAT domain; Int 95.8 1.8 3.8E-05 40.9 21.6 43 513-555 254-303 (352)
280 KOG1550 Extracellular protein 95.8 2.5 5.5E-05 42.4 27.5 76 281-364 455-538 (552)
281 PF13181 TPR_8: Tetratricopept 95.7 0.022 4.7E-07 31.6 3.7 32 512-543 2-33 (34)
282 PF04053 Coatomer_WDAD: Coatom 95.7 0.48 1E-05 45.5 14.6 81 159-254 346-426 (443)
283 KOG2280 Vacuolar assembly/sort 95.6 2.8 6.1E-05 41.9 28.9 109 372-500 686-794 (829)
284 KOG2471 TPR repeat-containing 95.5 2.3 5.1E-05 40.1 26.0 60 512-571 620-682 (696)
285 PF09613 HrpB1_HrpK: Bacterial 95.4 0.24 5.3E-06 39.1 9.5 115 445-566 15-131 (160)
286 KOG4648 Uncharacterized conser 95.2 0.034 7.3E-07 49.0 4.9 98 444-544 101-198 (536)
287 PF06552 TOM20_plant: Plant sp 95.2 0.1 2.2E-06 41.8 7.1 88 492-580 7-116 (186)
288 PF09205 DUF1955: Domain of un 95.0 1.1 2.4E-05 33.8 14.0 66 475-542 86-151 (161)
289 PF10602 RPN7: 26S proteasome 94.9 0.3 6.4E-06 40.2 9.3 96 441-537 37-139 (177)
290 TIGR02561 HrpB1_HrpK type III 94.8 0.27 5.8E-06 38.1 8.1 91 448-544 18-110 (153)
291 PRK11619 lytic murein transgly 94.7 5.7 0.00012 40.6 37.8 50 412-464 414-463 (644)
292 PF12921 ATP13: Mitochondrial 94.7 0.57 1.2E-05 35.8 9.8 49 436-484 48-97 (126)
293 PF04840 Vps16_C: Vps16, C-ter 94.7 3.4 7.4E-05 37.9 31.3 101 307-427 184-284 (319)
294 PF13176 TPR_7: Tetratricopept 94.7 0.081 1.8E-06 29.8 4.0 25 443-467 2-26 (36)
295 COG5159 RPN6 26S proteasome re 94.6 1.3 2.9E-05 38.4 12.5 26 515-540 129-154 (421)
296 PF13431 TPR_17: Tetratricopep 94.5 0.041 9E-07 30.5 2.5 23 52-74 10-32 (34)
297 PF12921 ATP13: Mitochondrial 94.5 0.72 1.6E-05 35.3 9.9 44 404-447 51-95 (126)
298 KOG3364 Membrane protein invol 94.5 0.59 1.3E-05 35.4 9.0 74 472-546 29-106 (149)
299 COG3629 DnrI DNA-binding trans 94.4 0.7 1.5E-05 40.7 10.8 80 55-135 153-237 (280)
300 PF14853 Fis1_TPR_C: Fis1 C-te 94.3 0.1 2.2E-06 32.4 4.1 34 513-546 3-36 (53)
301 smart00299 CLH Clathrin heavy 94.2 2.2 4.7E-05 33.7 15.3 40 62-102 14-53 (140)
302 PF09205 DUF1955: Domain of un 94.2 1.8 4E-05 32.7 13.7 58 412-470 93-150 (161)
303 PF07719 TPR_2: Tetratricopept 94.1 0.16 3.4E-06 28.0 4.4 27 442-468 3-29 (34)
304 COG1747 Uncharacterized N-term 93.9 6.2 0.00013 37.7 22.5 179 332-519 63-247 (711)
305 COG3629 DnrI DNA-binding trans 93.8 0.85 1.9E-05 40.2 10.2 80 89-169 152-236 (280)
306 PF08424 NRDE-2: NRDE-2, neces 93.7 4.5 9.8E-05 37.4 15.4 81 71-153 47-130 (321)
307 PF09613 HrpB1_HrpK: Bacterial 93.6 3 6.6E-05 33.1 13.7 112 413-532 18-130 (160)
308 KOG2471 TPR repeat-containing 93.6 6.9 0.00015 37.2 17.6 109 412-522 247-380 (696)
309 PF00515 TPR_1: Tetratricopept 93.6 0.23 4.9E-06 27.4 4.4 28 442-469 3-30 (34)
310 KOG1308 Hsp70-interacting prot 93.2 0.052 1.1E-06 48.0 1.9 121 416-541 125-245 (377)
311 COG1747 Uncharacterized N-term 93.2 8.3 0.00018 36.9 25.5 181 297-485 63-249 (711)
312 KOG2114 Vacuolar assembly/sort 92.9 12 0.00027 38.2 29.1 175 25-220 339-515 (933)
313 smart00028 TPR Tetratricopepti 92.8 0.18 3.9E-06 27.0 3.3 31 513-543 3-33 (34)
314 PF07035 Mic1: Colon cancer-as 92.7 4.4 9.6E-05 32.7 15.1 101 6-116 15-115 (167)
315 PF13174 TPR_6: Tetratricopept 92.7 0.079 1.7E-06 29.0 1.6 31 546-576 2-32 (33)
316 PF10602 RPN7: 26S proteasome 92.6 1.9 4E-05 35.6 10.1 96 407-503 38-140 (177)
317 KOG1920 IkappaB kinase complex 92.5 17 0.00038 38.9 24.5 19 202-220 684-702 (1265)
318 KOG4507 Uncharacterized conser 92.4 0.53 1.1E-05 45.2 7.3 101 444-546 611-711 (886)
319 PF09986 DUF2225: Uncharacteri 92.4 2.8 6.1E-05 35.8 11.1 94 451-545 88-199 (214)
320 PRK15180 Vi polysaccharide bio 92.4 1.5 3.3E-05 41.1 10.0 122 312-436 301-422 (831)
321 PF08424 NRDE-2: NRDE-2, neces 92.4 8.9 0.00019 35.5 15.3 108 8-118 8-130 (321)
322 PF10345 Cohesin_load: Cohesin 92.4 15 0.00032 37.8 41.3 49 346-394 372-428 (608)
323 smart00299 CLH Clathrin heavy 92.3 4.6 9.9E-05 31.8 16.0 38 378-416 15-52 (140)
324 PF11207 DUF2989: Protein of u 92.2 1.9 4.1E-05 35.7 9.4 75 455-531 121-198 (203)
325 PF13374 TPR_10: Tetratricopep 92.2 0.37 8E-06 28.1 4.2 30 512-541 3-32 (42)
326 COG0790 FOG: TPR repeat, SEL1 92.1 9.2 0.0002 34.9 22.9 150 312-470 53-221 (292)
327 PF07721 TPR_4: Tetratricopept 92.0 0.21 4.5E-06 25.6 2.5 23 513-535 3-25 (26)
328 KOG2396 HAT (Half-A-TPR) repea 91.8 13 0.00027 35.7 36.6 428 107-574 88-560 (568)
329 KOG2114 Vacuolar assembly/sort 91.7 17 0.00038 37.2 28.7 176 95-291 339-516 (933)
330 KOG1920 IkappaB kinase complex 91.7 21 0.00047 38.3 21.1 24 59-82 794-819 (1265)
331 KOG0890 Protein kinase of the 91.7 32 0.00069 40.2 34.7 63 475-541 1670-1732(2382)
332 KOG0128 RNA-binding protein SA 91.4 19 0.00041 36.9 34.8 99 52-153 110-218 (881)
333 TIGR03504 FimV_Cterm FimV C-te 91.2 0.49 1.1E-05 28.0 3.7 28 515-542 3-30 (44)
334 KOG4642 Chaperone-dependent E3 91.1 1.2 2.6E-05 37.6 7.2 80 418-502 23-104 (284)
335 KOG1464 COP9 signalosome, subu 91.1 9.6 0.00021 33.1 16.6 60 199-258 149-219 (440)
336 PRK10941 hypothetical protein; 91.1 2 4.3E-05 38.1 9.1 64 480-546 186-250 (269)
337 KOG4642 Chaperone-dependent E3 91.0 0.32 7E-06 40.8 3.9 89 447-540 17-107 (284)
338 PF10345 Cohesin_load: Cohesin 90.8 22 0.00047 36.6 38.5 190 380-570 371-603 (608)
339 KOG0376 Serine-threonine phosp 90.8 0.67 1.5E-05 43.5 6.1 97 447-547 11-108 (476)
340 KOG0376 Serine-threonine phosp 90.7 0.64 1.4E-05 43.6 5.9 97 482-581 11-109 (476)
341 PF11207 DUF2989: Protein of u 90.5 4.5 9.8E-05 33.6 9.9 75 70-145 121-198 (203)
342 PF13170 DUF4003: Protein of u 90.5 13 0.00029 33.7 20.9 47 108-154 80-132 (297)
343 PRK12798 chemotaxis protein; R 90.2 16 0.00035 34.3 20.1 188 348-539 125-323 (421)
344 PF13181 TPR_8: Tetratricopept 90.1 0.89 1.9E-05 24.9 4.2 27 442-468 3-29 (34)
345 PRK09687 putative lyase; Provi 89.8 15 0.00032 33.1 27.0 127 404-545 141-268 (280)
346 KOG0276 Vesicle coat complex C 89.7 8.4 0.00018 37.7 12.3 150 31-220 597-746 (794)
347 PF13374 TPR_10: Tetratricopep 89.4 0.95 2.1E-05 26.2 4.2 27 442-468 4-30 (42)
348 COG2909 MalT ATP-dependent tra 89.3 30 0.00065 36.0 30.2 227 239-465 424-684 (894)
349 KOG4507 Uncharacterized conser 89.3 2.5 5.3E-05 40.9 8.5 89 380-469 617-705 (886)
350 PF04910 Tcf25: Transcriptiona 88.9 21 0.00045 33.6 17.3 97 444-542 107-224 (360)
351 KOG2300 Uncharacterized conser 88.7 23 0.0005 33.9 32.6 160 306-468 329-513 (629)
352 KOG0545 Aryl-hydrocarbon recep 88.6 4.8 0.0001 34.3 8.8 61 481-543 236-296 (329)
353 PF04097 Nic96: Nup93/Nic96; 88.5 32 0.0007 35.3 21.4 18 168-185 266-283 (613)
354 TIGR02561 HrpB1_HrpK type III 88.2 11 0.00024 29.6 11.8 52 67-119 22-73 (153)
355 COG2909 MalT ATP-dependent tra 88.1 36 0.00078 35.5 30.0 225 204-431 424-685 (894)
356 PRK11619 lytic murein transgly 88.0 35 0.00076 35.2 40.0 375 30-430 43-464 (644)
357 KOG1586 Protein required for f 87.8 16 0.00036 31.1 22.0 57 378-434 162-224 (288)
358 PRK09687 putative lyase; Provi 87.8 21 0.00045 32.3 26.3 235 52-311 34-278 (280)
359 PF04190 DUF410: Protein of un 87.5 20 0.00044 31.9 12.9 64 510-573 89-170 (260)
360 PF09986 DUF2225: Uncharacteri 87.3 15 0.00033 31.4 11.5 63 442-505 120-194 (214)
361 PF14561 TPR_20: Tetratricopep 87.3 5.1 0.00011 28.5 7.3 67 496-564 8-78 (90)
362 KOG0551 Hsp90 co-chaperone CNS 87.2 5.6 0.00012 35.7 8.8 101 441-544 82-186 (390)
363 KOG3364 Membrane protein invol 86.8 12 0.00027 28.7 9.3 67 403-469 30-100 (149)
364 KOG0551 Hsp90 co-chaperone CNS 86.7 3.5 7.6E-05 36.9 7.4 98 405-504 81-181 (390)
365 KOG1464 COP9 signalosome, subu 86.1 22 0.00048 31.0 19.1 209 260-468 21-259 (440)
366 KOG3941 Intermediate in Toll s 86.0 7 0.00015 34.2 8.6 33 104-136 86-118 (406)
367 PF07720 TPR_3: Tetratricopept 85.7 3.1 6.8E-05 23.3 4.4 30 513-542 3-34 (36)
368 KOG3941 Intermediate in Toll s 85.6 10 0.00022 33.3 9.3 105 52-175 64-173 (406)
369 KOG1308 Hsp70-interacting prot 85.6 1.4 3E-05 39.5 4.4 120 380-504 124-243 (377)
370 PRK10941 hypothetical protein; 85.6 1.5 3.3E-05 38.8 4.8 68 515-582 185-253 (269)
371 COG3947 Response regulator con 85.6 26 0.00055 31.1 14.9 56 130-186 284-339 (361)
372 PF12862 Apc5: Anaphase-promot 85.5 7.6 0.00017 27.9 7.7 58 486-544 9-74 (94)
373 PF10579 Rapsyn_N: Rapsyn N-te 85.4 2.4 5.3E-05 28.7 4.5 49 487-536 18-68 (80)
374 PF07721 TPR_4: Tetratricopept 85.2 1.5 3.4E-05 22.3 2.9 17 446-462 7-23 (26)
375 PF07035 Mic1: Colon cancer-as 85.1 19 0.00041 29.2 14.8 132 42-187 16-147 (167)
376 KOG0276 Vesicle coat complex C 84.9 18 0.00038 35.6 11.5 133 21-186 615-747 (794)
377 cd00923 Cyt_c_Oxidase_Va Cytoc 84.9 5.9 0.00013 28.2 6.3 63 35-98 22-84 (103)
378 PF02284 COX5A: Cytochrome c o 84.6 13 0.00028 26.9 8.7 34 399-432 39-72 (108)
379 KOG1463 26S proteasome regulat 84.4 26 0.00056 31.8 11.4 54 515-568 132-192 (411)
380 KOG2062 26S proteasome regulat 84.2 52 0.0011 33.6 33.0 123 377-504 508-634 (929)
381 COG4455 ImpE Protein of avirul 83.5 13 0.00029 31.3 8.8 125 408-544 4-138 (273)
382 PRK12798 chemotaxis protein; R 83.0 43 0.00093 31.7 21.9 196 277-474 124-329 (421)
383 KOG2062 26S proteasome regulat 83.0 59 0.0013 33.2 34.8 63 162-224 176-239 (929)
384 PF04910 Tcf25: Transcriptiona 82.8 43 0.00094 31.6 18.9 140 31-188 21-167 (360)
385 KOG0545 Aryl-hydrocarbon recep 82.7 31 0.00066 29.8 11.1 65 442-510 232-296 (329)
386 PF02284 COX5A: Cytochrome c o 82.5 16 0.00035 26.4 9.1 59 353-412 28-86 (108)
387 TIGR03504 FimV_Cterm FimV C-te 81.4 4.1 9E-05 24.1 3.9 21 412-432 6-26 (44)
388 KOG0530 Protein farnesyltransf 81.4 36 0.00078 29.8 14.6 122 346-470 54-177 (318)
389 KOG0128 RNA-binding protein SA 81.3 72 0.0015 33.1 37.3 135 17-154 110-260 (881)
390 PF13170 DUF4003: Protein of u 81.2 43 0.00093 30.5 22.2 48 142-189 79-132 (297)
391 KOG4570 Uncharacterized conser 81.2 20 0.00044 32.1 9.5 48 455-503 115-162 (418)
392 COG4976 Predicted methyltransf 80.8 1.9 4E-05 36.3 3.2 59 485-546 5-64 (287)
393 KOG0890 Protein kinase of the 80.3 1.3E+02 0.0029 35.7 38.0 62 300-364 1670-1731(2382)
394 COG4976 Predicted methyltransf 80.3 4 8.7E-05 34.4 4.9 58 448-509 3-60 (287)
395 smart00028 TPR Tetratricopepti 80.3 4 8.7E-05 21.2 3.8 26 443-468 4-29 (34)
396 KOG4570 Uncharacterized conser 79.7 16 0.00035 32.6 8.5 101 157-259 61-164 (418)
397 KOG4279 Serine/threonine prote 79.3 79 0.0017 32.4 14.6 185 354-543 182-398 (1226)
398 KOG2422 Uncharacterized conser 79.3 69 0.0015 31.7 15.4 95 448-542 350-450 (665)
399 KOG2066 Vacuolar assembly/sort 79.0 83 0.0018 32.5 27.0 102 63-172 364-467 (846)
400 COG5191 Uncharacterized conser 78.8 4.9 0.00011 35.6 5.2 66 53-119 105-171 (435)
401 PRK13800 putative oxidoreducta 78.7 1.1E+02 0.0023 33.5 26.6 125 404-539 755-880 (897)
402 PF08311 Mad3_BUB1_I: Mad3/BUB 77.2 31 0.00067 26.5 11.0 81 454-538 40-126 (126)
403 PF14561 TPR_20: Tetratricopep 77.1 24 0.00051 25.1 8.4 31 439-469 21-51 (90)
404 PF04097 Nic96: Nup93/Nic96; 77.1 94 0.002 32.0 23.9 62 91-154 113-181 (613)
405 PF04190 DUF410: Protein of un 75.7 59 0.0013 29.0 14.6 82 438-540 88-170 (260)
406 PF07163 Pex26: Pex26 protein; 75.5 41 0.00089 29.8 9.6 20 28-47 43-62 (309)
407 PF11846 DUF3366: Domain of un 75.3 12 0.00027 31.4 6.8 46 495-542 130-175 (193)
408 PF00637 Clathrin: Region in C 75.1 1.3 2.8E-05 35.1 0.8 45 68-112 20-64 (143)
409 PF10579 Rapsyn_N: Rapsyn N-te 74.8 10 0.00022 25.9 4.7 17 452-468 18-34 (80)
410 PF07163 Pex26: Pex26 protein; 74.6 62 0.0013 28.7 13.0 122 62-183 42-181 (309)
411 PF12862 Apc5: Anaphase-promot 74.3 22 0.00047 25.5 6.9 25 444-468 45-69 (94)
412 cd00923 Cyt_c_Oxidase_Va Cytoc 74.3 29 0.00064 24.9 9.2 33 399-431 36-68 (103)
413 PF12968 DUF3856: Domain of Un 73.5 36 0.00078 25.5 11.8 87 452-539 21-128 (144)
414 PF00637 Clathrin: Region in C 73.4 1.6 3.5E-05 34.5 1.0 84 25-115 12-95 (143)
415 PF09670 Cas_Cas02710: CRISPR- 73.0 35 0.00075 32.5 9.7 57 27-84 138-198 (379)
416 PF14853 Fis1_TPR_C: Fis1 C-te 72.2 21 0.00045 22.3 5.7 22 447-468 8-29 (53)
417 PF13929 mRNA_stabil: mRNA sta 72.1 74 0.0016 28.5 13.1 185 17-205 86-288 (292)
418 COG4941 Predicted RNA polymera 71.9 81 0.0017 28.9 11.1 121 419-544 270-398 (415)
419 KOG0686 COP9 signalosome, subu 71.6 92 0.002 29.4 13.8 92 92-185 152-254 (466)
420 COG4455 ImpE Protein of avirul 71.3 58 0.0013 27.7 9.1 64 443-510 4-67 (273)
421 PF00244 14-3-3: 14-3-3 protei 71.2 71 0.0015 28.0 11.4 59 340-398 6-65 (236)
422 KOG3824 Huntingtin interacting 68.5 20 0.00043 31.9 6.3 53 416-469 127-179 (472)
423 PF09670 Cas_Cas02710: CRISPR- 68.0 90 0.002 29.8 11.3 57 377-434 138-198 (379)
424 PF10516 SHNi-TPR: SHNi-TPR; 67.6 14 0.0003 21.1 3.6 29 512-540 2-30 (38)
425 KOG4814 Uncharacterized conser 66.3 30 0.00066 34.4 7.6 90 450-543 364-460 (872)
426 KOG4077 Cytochrome c oxidase, 65.9 43 0.00094 25.4 6.7 44 74-117 68-111 (149)
427 PF13934 ELYS: Nuclear pore co 64.7 95 0.0021 27.0 14.2 21 95-115 113-133 (226)
428 COG3947 Response regulator con 64.2 1.1E+02 0.0024 27.5 17.1 59 443-503 282-340 (361)
429 PF10255 Paf67: RNA polymerase 64.1 40 0.00088 32.0 8.0 28 511-538 164-191 (404)
430 PF04781 DUF627: Protein of un 64.1 57 0.0012 24.2 7.4 21 448-468 4-24 (111)
431 PF00244 14-3-3: 14-3-3 protei 63.7 1E+02 0.0022 27.0 11.2 58 60-117 6-64 (236)
432 COG0735 Fur Fe2+/Zn2+ uptake r 63.4 56 0.0012 25.9 7.6 62 7-69 8-69 (145)
433 KOG2422 Uncharacterized conser 63.2 1.7E+02 0.0036 29.3 18.2 156 68-223 251-447 (665)
434 KOG3807 Predicted membrane pro 63.0 1.2E+02 0.0026 27.6 12.8 18 136-153 286-303 (556)
435 KOG2063 Vacuolar assembly/sort 62.2 2.3E+02 0.0049 30.5 20.9 28 266-293 685-712 (877)
436 KOG4521 Nuclear pore complex, 61.7 1.7E+02 0.0036 32.1 12.2 117 93-216 986-1123(1480)
437 PF02184 HAT: HAT (Half-A-TPR) 61.6 21 0.00045 19.4 3.3 24 492-517 3-26 (32)
438 PF14689 SPOB_a: Sensor_kinase 61.6 21 0.00046 23.1 4.2 29 510-538 22-50 (62)
439 PF11817 Foie-gras_1: Foie gra 61.5 45 0.00097 29.5 7.6 62 91-152 179-245 (247)
440 PF13929 mRNA_stabil: mRNA sta 61.4 1.2E+02 0.0027 27.2 13.3 63 367-429 199-262 (292)
441 PHA02537 M terminase endonucle 61.3 59 0.0013 28.1 7.8 34 511-544 169-211 (230)
442 KOG1839 Uncharacterized protei 61.1 1.3E+02 0.0028 33.3 11.7 161 377-538 939-1126(1236)
443 KOG2066 Vacuolar assembly/sort 60.8 2.2E+02 0.0047 29.7 27.1 102 27-137 363-467 (846)
444 KOG2063 Vacuolar assembly/sort 60.4 2.4E+02 0.0053 30.3 20.1 27 22-48 506-532 (877)
445 PF12968 DUF3856: Domain of Un 60.3 72 0.0016 24.1 8.6 86 486-572 20-128 (144)
446 PF14689 SPOB_a: Sensor_kinase 60.2 17 0.00036 23.6 3.5 29 54-82 22-50 (62)
447 KOG3824 Huntingtin interacting 59.9 38 0.00082 30.3 6.5 66 448-517 124-190 (472)
448 KOG0686 COP9 signalosome, subu 59.6 1.6E+02 0.0035 27.9 14.0 62 197-258 152-215 (466)
449 KOG2581 26S proteasome regulat 59.3 1.6E+02 0.0035 27.8 11.5 138 370-510 124-279 (493)
450 COG2912 Uncharacterized conser 59.1 49 0.0011 29.2 7.1 62 481-545 187-249 (269)
451 PHA02537 M terminase endonucle 58.7 1.2E+02 0.0027 26.3 10.5 14 492-505 194-207 (230)
452 PF07575 Nucleopor_Nup85: Nup8 58.4 2.2E+02 0.0048 29.1 19.0 62 334-397 404-465 (566)
453 COG5191 Uncharacterized conser 58.4 40 0.00086 30.3 6.4 79 86-166 103-182 (435)
454 KOG1839 Uncharacterized protei 58.1 1.1E+02 0.0025 33.7 10.7 126 28-153 940-1085(1236)
455 KOG4077 Cytochrome c oxidase, 57.3 85 0.0018 24.0 7.3 33 435-467 79-111 (149)
456 smart00386 HAT HAT (Half-A-TPR 56.4 28 0.00061 18.2 3.7 13 71-83 3-15 (33)
457 KOG0530 Protein farnesyltransf 55.9 1.5E+02 0.0032 26.3 18.1 225 30-259 53-297 (318)
458 PF11817 Foie-gras_1: Foie gra 55.8 84 0.0018 27.8 8.4 54 480-534 183-241 (247)
459 PF09477 Type_III_YscG: Bacter 55.0 83 0.0018 23.2 8.8 81 33-120 19-99 (116)
460 COG4259 Uncharacterized protei 54.7 79 0.0017 22.8 6.5 53 75-129 57-109 (121)
461 KOG3677 RNA polymerase I-assoc 54.5 59 0.0013 30.6 7.0 60 373-432 238-299 (525)
462 PF11846 DUF3366: Domain of un 54.4 71 0.0015 26.9 7.4 34 436-469 140-173 (193)
463 cd00280 TRFH Telomeric Repeat 54.2 1.3E+02 0.0027 25.0 10.9 20 169-188 120-139 (200)
464 PF07575 Nucleopor_Nup85: Nup8 54.0 2.6E+02 0.0057 28.6 20.7 61 300-362 405-465 (566)
465 COG4259 Uncharacterized protei 53.0 84 0.0018 22.7 7.0 47 423-469 55-101 (121)
466 PF11663 Toxin_YhaV: Toxin wit 50.6 17 0.00038 27.8 2.7 32 100-133 105-136 (140)
467 COG0735 Fur Fe2+/Zn2+ uptake r 50.2 95 0.0021 24.6 7.0 46 129-174 24-69 (145)
468 cd02680 MIT_calpain7_2 MIT: do 49.4 21 0.00046 24.2 2.7 34 492-541 3-36 (75)
469 KOG4814 Uncharacterized conser 48.5 2.3E+02 0.0049 28.8 10.1 124 412-542 361-490 (872)
470 PF10255 Paf67: RNA polymerase 48.4 1.1E+02 0.0023 29.4 8.0 101 53-153 73-192 (404)
471 PF04212 MIT: MIT (microtubule 47.8 59 0.0013 21.6 4.8 15 523-537 17-31 (69)
472 PF09454 Vps23_core: Vps23 cor 47.7 24 0.00051 23.2 2.7 50 18-68 6-55 (65)
473 smart00777 Mad3_BUB1_I Mad3/BU 47.7 1.3E+02 0.0028 23.2 9.3 44 493-536 80-124 (125)
474 cd02681 MIT_calpain7_1 MIT: do 46.9 56 0.0012 22.4 4.4 18 521-538 16-33 (76)
475 COG2912 Uncharacterized conser 44.3 51 0.0011 29.2 4.9 64 516-579 186-250 (269)
476 KOG2034 Vacuolar sorting prote 44.3 4.2E+02 0.0092 28.2 25.0 71 60-142 363-433 (911)
477 PRK10564 maltose regulon perip 44.3 37 0.00081 30.5 4.2 42 52-93 253-295 (303)
478 PRK10564 maltose regulon perip 44.1 54 0.0012 29.5 5.1 38 91-128 258-295 (303)
479 PF05944 Phage_term_smal: Phag 43.1 1.6E+02 0.0034 22.9 8.8 21 450-470 58-78 (132)
480 cd00280 TRFH Telomeric Repeat 42.9 2E+02 0.0042 23.9 8.2 22 447-468 118-139 (200)
481 TIGR02508 type_III_yscG type I 42.1 1.4E+02 0.0029 21.9 7.8 79 35-120 20-98 (115)
482 PF08311 Mad3_BUB1_I: Mad3/BUB 41.2 1.6E+02 0.0036 22.6 8.9 43 73-115 81-124 (126)
483 PRK11639 zinc uptake transcrip 38.4 2.2E+02 0.0047 23.4 7.6 39 67-105 37-75 (169)
484 cd02679 MIT_spastin MIT: domai 37.8 91 0.002 21.6 4.4 32 492-539 5-36 (79)
485 KOG1310 WD40 repeat protein [G 37.7 1.4E+02 0.0031 29.3 7.0 89 454-544 388-478 (758)
486 PF15297 CKAP2_C: Cytoskeleton 37.6 3E+02 0.0065 25.6 8.7 63 142-206 120-186 (353)
487 PF05944 Phage_term_smal: Phag 37.4 2E+02 0.0043 22.4 9.1 30 162-191 50-79 (132)
488 COG4941 Predicted RNA polymera 36.1 3.6E+02 0.0078 25.0 12.8 116 351-469 272-394 (415)
489 PF14863 Alkyl_sulf_dimr: Alky 35.9 2.1E+02 0.0046 22.6 6.8 48 511-558 70-118 (141)
490 PRK11639 zinc uptake transcrip 35.7 2.3E+02 0.0051 23.2 7.4 47 129-175 29-75 (169)
491 PF04762 IKI3: IKI3 family; I 35.5 6.5E+02 0.014 27.8 12.4 133 419-569 792-926 (928)
492 PF07678 A2M_comp: A-macroglob 35.1 1.6E+02 0.0034 26.1 6.8 46 106-153 115-160 (246)
493 cd08819 CARD_MDA5_2 Caspase ac 35.1 1.6E+02 0.0035 20.8 6.4 14 174-187 50-63 (88)
494 PF11838 ERAP1_C: ERAP1-like C 35.0 3.7E+02 0.008 24.8 12.4 114 32-149 142-261 (324)
495 KOG2908 26S proteasome regulat 34.9 3.8E+02 0.0082 24.9 10.6 88 375-462 80-179 (380)
496 cd02682 MIT_AAA_Arch MIT: doma 34.2 88 0.0019 21.4 3.8 20 519-538 14-33 (75)
497 PF15297 CKAP2_C: Cytoskeleton 34.0 4E+02 0.0086 24.9 9.6 55 488-544 115-173 (353)
498 TIGR02710 CRISPR-associated pr 33.9 3.5E+02 0.0076 25.8 8.9 127 445-572 135-274 (380)
499 KOG0687 26S proteasome regulat 33.9 3.8E+02 0.0083 24.7 14.0 28 441-468 105-132 (393)
500 cd02683 MIT_1 MIT: domain cont 33.9 1.2E+02 0.0026 20.8 4.5 10 494-503 5-14 (77)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.1e-65 Score=529.90 Aligned_cols=547 Identities=21% Similarity=0.286 Sum_probs=397.7
Q ss_pred hHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 038622 2 KLVETAHADMVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQM 81 (587)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 81 (587)
+.|.++|++|. +||..+|+.++.+|.+.|++++|..+|++|...|+.||..+|..++.++...+++..+.+++..+
T Consensus 138 ~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~ 213 (857)
T PLN03077 138 VHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHV 213 (857)
T ss_pred HHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHH
Confidence 45666777765 56777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcc
Q 038622 82 VEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVF 161 (587)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 161 (587)
.+.|..++..+++.|+.+|++.|+++.|..+|++|. .||..+|+.++.+|++.|++++|.++|++|...|+.||..
T Consensus 214 ~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ 289 (857)
T PLN03077 214 VRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLM 289 (857)
T ss_pred HHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChh
Confidence 777777777777888888888888888888888775 3577778888888888888888888888888888888888
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 038622 162 TYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLC 241 (587)
Q Consensus 162 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 241 (587)
+|+.++.++.+.|+.+.+.+++..+...|+.|+..+++.++.+|++.|++++|.++|++|. .||..+|+.++.+|.
T Consensus 290 ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~ 365 (857)
T PLN03077 290 TITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYE 365 (857)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHH
Confidence 8888888888888888888888888888878888888888888888888888888887775 357777888888888
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 038622 242 LTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEE 321 (587)
Q Consensus 242 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 321 (587)
+.|++++|.++|++|.+.|+.||..+|..++.++.+.|+++.|.++++.+.+.|..++..+++.++.+|.+.|++++|.+
T Consensus 366 ~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~ 445 (857)
T PLN03077 366 KNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALE 445 (857)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHH
Confidence 88888888888888887788888888888888888888888888888888888877788888888888888888888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 038622 322 IFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGC 401 (587)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 401 (587)
+|++|.+ ++..+|+.++.+|.+.|+.++|..+|++|.. ++.||..+|..++.+|.+.|+.+.+.+++..+.+.|+
T Consensus 446 vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~ 520 (857)
T PLN03077 446 VFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGI 520 (857)
T ss_pred HHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCC
Confidence 8877753 4666788888888888888888888888775 4777777777777777777777777777777777777
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 038622 402 EPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHV 481 (587)
Q Consensus 402 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 481 (587)
.++..+++.++.+|.+.|++++|.++|+.+ .++..+|+.++.+|.+.|+.++|+++|++|.+.|+.||..+|..+
T Consensus 521 ~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~l 595 (857)
T PLN03077 521 GFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISL 595 (857)
T ss_pred CccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHH
Confidence 666666666666666666666666666554 345566666666666666666666666666666666666666666
Q ss_pred HHHHHhCCCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCchhhhhhhHHHHHHH
Q 038622 482 FRGLCNGGGPIGEAVDFVIEML-ERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDRETSMVRGFLKIRKF 560 (587)
Q Consensus 482 ~~~~~~~~~~~~~A~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (587)
+.+|.+.|. +++|.++|+.|. +.|+.|+...|..++++|.+.|++++|.++++++. ..|+...|..++.+|...|+.
T Consensus 596 l~a~~~~g~-v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~-~~pd~~~~~aLl~ac~~~~~~ 673 (857)
T PLN03077 596 LCACSRSGM-VTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP-ITPDPAVWGALLNACRIHRHV 673 (857)
T ss_pred HHHHhhcCh-HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCh
Confidence 666666666 666666666666 45566666666666666666666666666666553 233333344444444444444
Q ss_pred HHHHHhcchhhh
Q 038622 561 QDALATFGDILD 572 (587)
Q Consensus 561 ~~A~~~~~~~~~ 572 (587)
+.|....+++.+
T Consensus 674 e~~e~~a~~l~~ 685 (857)
T PLN03077 674 ELGELAAQHIFE 685 (857)
T ss_pred HHHHHHHHHHHh
Confidence 444444444433
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.8e-64 Score=522.80 Aligned_cols=557 Identities=19% Similarity=0.281 Sum_probs=531.6
Q ss_pred ChHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 038622 1 LKLVETAHADMVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQ 80 (587)
Q Consensus 1 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 80 (587)
++.|..+|++|...|+.||..+|+.++++|.+.+++..+.+++..+.+.|+.||+.+++.++.+|.+.|++++|..+|+.
T Consensus 168 ~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~ 247 (857)
T PLN03077 168 FDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDR 247 (857)
T ss_pred HHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhc
Confidence 36799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc
Q 038622 81 MVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDV 160 (587)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 160 (587)
|. .++..+|+.++.+|++.|++++|+.+|++|...|+.||..+|+.++.++.+.|+.+.+.+++..+.+.|+.||.
T Consensus 248 m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~ 323 (857)
T PLN03077 248 MP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDV 323 (857)
T ss_pred CC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccch
Confidence 86 35778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 038622 161 FTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGL 240 (587)
Q Consensus 161 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 240 (587)
.+|+.++.+|++.|++++|.++|++|. .|+..+|+.++.+|.+.|++++|+++|++|...|+.||..+|..++.++
T Consensus 324 ~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~ 399 (857)
T PLN03077 324 SVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSAC 399 (857)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHH
Confidence 999999999999999999999999986 4688899999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 038622 241 CLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAE 320 (587)
Q Consensus 241 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 320 (587)
.+.|+++.|.++++.+.+.|+.|+..+++.++..|.+.|++++|.++|++|.+ ++..+|+.++.+|.+.|+.++|+
T Consensus 400 ~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~ 475 (857)
T PLN03077 400 ACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEAL 475 (857)
T ss_pred hccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999864 57789999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 038622 321 EIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNG 400 (587)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 400 (587)
.+|++|.. ++.|+..+|..++.+|.+.|+.+.+.+++..+.+.|+.++..+++.++..|.+.|++++|..+|+.+
T Consensus 476 ~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~---- 550 (857)
T PLN03077 476 IFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH---- 550 (857)
T ss_pred HHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----
Confidence 99999986 5799999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHH-hcCCCCCHHHHH
Q 038622 401 CEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMM-EKADPPDALTYK 479 (587)
Q Consensus 401 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~ 479 (587)
.||..+|+.++.+|.+.|+.++|.++|++|.+.|+.||..+|+.++.+|.+.|++++|.++|+.|. +.|+.|+..+|.
T Consensus 551 -~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~ 629 (857)
T PLN03077 551 -EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA 629 (857)
T ss_pred -CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHH
Confidence 478999999999999999999999999999999999999999999999999999999999999999 578999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCc-hhhhhhhHHHHH
Q 038622 480 HVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDR-ETSMVRGFLKIR 558 (587)
Q Consensus 480 ~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 558 (587)
.++..+.+.|+ +++|.+++++|. +.|+..+|..|..+|...|+.+.+....+++.+..|.+.. +..+...|...|
T Consensus 630 ~lv~~l~r~G~-~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g 705 (857)
T PLN03077 630 CVVDLLGRAGK-LTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAG 705 (857)
T ss_pred HHHHHHHhCCC-HHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCC
Confidence 99999999999 999999999983 6899999999999999999999999999999999998765 555667899999
Q ss_pred HHHHHHHhcchhhhccCchhh
Q 038622 559 KFQDALATFGDILDSRMPRKT 579 (587)
Q Consensus 559 ~~~~A~~~~~~~~~~~~~~~~ 579 (587)
++++|.+..+.+.+.+.+++.
T Consensus 706 ~~~~a~~vr~~M~~~g~~k~~ 726 (857)
T PLN03077 706 KWDEVARVRKTMRENGLTVDP 726 (857)
T ss_pred ChHHHHHHHHHHHHcCCCCCC
Confidence 999999999999998866543
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.8e-62 Score=494.38 Aligned_cols=522 Identities=21% Similarity=0.314 Sum_probs=456.4
Q ss_pred CCCHhhHHHHHHHHHHcCChhhHHHHHHhhccCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHH
Q 038622 17 KPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGL-APDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNV 95 (587)
Q Consensus 17 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 95 (587)
+++...|..++..|++.|++++|.++|++|.+.++ +++...+..++..|.+.|..++|..+++.|.. ++..+|+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 55677888888888999999999999999988874 46667777888888899999999998888864 68888999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCC
Q 038622 96 LVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGE 175 (587)
Q Consensus 96 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 175 (587)
++.+|++.|+++.|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999999999999999999999999999999999999998888999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHh--CCCCCCHhhHHHHHHHHHhcCChHHHHHHH
Q 038622 176 VEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTS--KGILPDVCTFNSLIQGLCLTSNFDVAMELF 253 (587)
Q Consensus 176 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 253 (587)
+++|.++|+.|...++.|+..+|+.++.+|++.|++++|.+++++|.. .++.||..+|+.++.+|.+.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999888899999999999999999999999999999976 567889999999999999999999999999
Q ss_pred HHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC
Q 038622 254 QEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISR 333 (587)
Q Consensus 254 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 333 (587)
+.|.+.+++|+..+|+.++.+|++.|++++|.++|++|...|+.|+..+|+.++.+|++.|++++|.++++.|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999998999999999999999999999999999999999889999999999999999999999999999999999899
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHH
Q 038622 334 NSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIG 413 (587)
Q Consensus 334 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 413 (587)
+..+|+.++.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.|++++|.++|++|...|+.||..+|..++.
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999998888899999999999999999999999999999998889999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh-----------------------cCCHHHHHHHHHHHHhcC
Q 038622 414 GLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFR-----------------------RKRTTEAMRLFREMMEKA 470 (587)
Q Consensus 414 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------------------~g~~~~A~~~~~~~~~~~ 470 (587)
+|.+.|++++|.+++++|.+.|+.|+..+|+.++..+.. .+..++|..+|++|.+.|
T Consensus 763 a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~G 842 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAG 842 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCC
Confidence 999999999999999999999999998888888755331 122467889999999999
Q ss_pred CCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCC
Q 038622 471 DPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSD 545 (587)
Q Consensus 471 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 545 (587)
+.||..+|..++..+...++ ...+..+++.+...+..|+..+|..+.+.+.+. .++|..+++.+.+.+..++
T Consensus 843 i~Pd~~T~~~vL~cl~~~~~-~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~ 914 (1060)
T PLN03218 843 TLPTMEVLSQVLGCLQLPHD-ATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPS 914 (1060)
T ss_pred CCCCHHHHHHHHHHhccccc-HHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCC
Confidence 99999999988877767777 888888888777655667788888888876322 3589999999988886654
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=4.7e-62 Score=494.99 Aligned_cols=504 Identities=24% Similarity=0.380 Sum_probs=477.7
Q ss_pred hHHHHHHHHHHhCCC-CCCHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 038622 2 KLVETAHADMVSRGI-KPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQ 80 (587)
Q Consensus 2 ~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 80 (587)
+.|.++|++|.+.|+ +++...++.++..|.+.|..++|..+|+.|. .||..+|+.++.+|++.|+++.|.++|+.
T Consensus 387 ~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~----~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~ 462 (1060)
T PLN03218 387 KDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR----NPTLSTFNMLMSVCASSQDIDGALRVLRL 462 (1060)
T ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC----CCCHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 679999999999985 5688888899999999999999999999998 38999999999999999999999999999
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc
Q 038622 81 MVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDV 160 (587)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 160 (587)
|.+.|+.++..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|+.|...|+.||.
T Consensus 463 M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~ 542 (1060)
T PLN03218 463 VQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDR 542 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 038622 161 FTYNSLISGLCKLGEVEEAVEILNQMIL--RDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQ 238 (587)
Q Consensus 161 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 238 (587)
.+|+.++.+|++.|++++|.++|++|.. .++.|+..+|+.++.+|++.|++++|.++|+.|.+.++.|+..+|+.++.
T Consensus 543 vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ 622 (1060)
T PLN03218 543 VVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVN 622 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHH
Confidence 9999999999999999999999999986 57889999999999999999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 038622 239 GLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEE 318 (587)
Q Consensus 239 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 318 (587)
+|.+.|++++|.++|++|.+.|+.||..+|..++.+|++.|++++|.++++.|.+.|+.|+..+|+.++.+|++.|++++
T Consensus 623 ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~ee 702 (1060)
T PLN03218 623 SCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKK 702 (1060)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038622 319 AEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTS 398 (587)
Q Consensus 319 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 398 (587)
|.++|++|...+..|+..+|+.++.+|++.|++++|.++|++|...|+.||..+|+.++.+|.+.|+++.|.+++..|.+
T Consensus 703 A~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k 782 (1060)
T PLN03218 703 ALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKE 782 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcchHHHHHHHHHh----c-------------------CChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC
Q 038622 399 NGCEPDIVTYGTLIGGLCK----A-------------------GRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKR 455 (587)
Q Consensus 399 ~~~~~~~~~~~~l~~~~~~----~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 455 (587)
.|+.|+..+|+.++..|.+ . +..+.|..+|++|.+.|+.|+..+|..++.++...+.
T Consensus 783 ~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~ 862 (1060)
T PLN03218 783 DGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHD 862 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhccccc
Confidence 9999999999998866432 1 1246799999999999999999999999988888899
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHH
Q 038622 456 TTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFS 512 (587)
Q Consensus 456 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~ 512 (587)
...+..+++.+...+..|+..+|+.++..+ |+..++|..++++|.+.|+.|+..
T Consensus 863 ~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~---~~~~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 863 ATLRNRLIENLGISADSQKQSNLSTLVDGF---GEYDPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHHHHHhccCCCCcchhhhHHHHHhh---ccChHHHHHHHHHHHHcCCCCCcc
Confidence 999999999988877789999999999987 331468999999999999999753
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.2e-56 Score=454.77 Aligned_cols=476 Identities=20% Similarity=0.312 Sum_probs=448.4
Q ss_pred CCCHhhHHHHHHHHHHcCChhhHHHHHHhhccCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHH
Q 038622 17 KPDVSTFNILIKALCKAHQIRPAILMMEEMPGYG-LAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNV 95 (587)
Q Consensus 17 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 95 (587)
.++...|+.++..+.+.|++++|..+|+.|...+ +.||..+|+.++.++.+.++++.+.+++..+.+.|+.++..+++.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3456689999999999999999999999998754 678999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCC
Q 038622 96 LVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGE 175 (587)
Q Consensus 96 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 175 (587)
++.+|++.|+++.|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|..++.++...|.
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence 9999999999999999999996 478999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHH
Q 038622 176 VEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQE 255 (587)
Q Consensus 176 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 255 (587)
.+.+.+++..+.+.++.++..+++.|+.+|++.|++++|.++|+.|.. +|..+|+.++.+|.+.|++++|.++|++
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~ 315 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYE 315 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998854 5889999999999999999999999999
Q ss_pred HHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH
Q 038622 256 MKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNS 335 (587)
Q Consensus 256 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 335 (587)
|.+.|+.||..+|..++.+|++.|++++|.+++..+.+.|++++..+++.++.+|++.|++++|.++|++|. .++.
T Consensus 316 M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~ 391 (697)
T PLN03081 316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNL 391 (697)
T ss_pred HHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCe
Confidence 999999999999999999999999999999999999999999999999999999999999999999999986 4688
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCcchHHHHHHH
Q 038622 336 VTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTS-NGCEPDIVTYGTLIGG 414 (587)
Q Consensus 336 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~ 414 (587)
.+|+.++.+|.+.|+.++|.++|++|...|+.||..||+.++.+|.+.|..++|.++|+.|.+ .|+.|+..+|..++.+
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~ 471 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL 471 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999986 5899999999999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHH
Q 038622 415 LCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGE 494 (587)
Q Consensus 415 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 494 (587)
|.+.|++++|.++++++ +..|+..+|+.++.+|...|+.+.|..+++++.+.+ |.+..+|..++..|...|+ +++
T Consensus 472 l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~y~~~G~-~~~ 546 (697)
T PLN03081 472 LGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKLNNYVVLLNLYNSSGR-QAE 546 (697)
T ss_pred HHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCCcchHHHHHHHHhCCC-HHH
Confidence 99999999999998765 467899999999999999999999999999998764 4556789999999999999 999
Q ss_pred HHHHHHHHHHcCCCC
Q 038622 495 AVDFVIEMLERGFLP 509 (587)
Q Consensus 495 A~~~~~~~~~~~~~p 509 (587)
|.++++.|.+.|+.+
T Consensus 547 A~~v~~~m~~~g~~k 561 (697)
T PLN03081 547 AAKVVETLKRKGLSM 561 (697)
T ss_pred HHHHHHHHHHcCCcc
Confidence 999999999988764
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.6e-55 Score=446.47 Aligned_cols=480 Identities=19% Similarity=0.273 Sum_probs=454.0
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 038622 53 PDERTFTTLMQGLIEEGNLDGALRIREQMVEHG-CLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTL 131 (587)
Q Consensus 53 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 131 (587)
.+...|+.++..+.+.|++++|+++|+.|...+ ..++..+|+.++.++.+.++++.+.+++..+.+.|+.||..+|+.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 345589999999999999999999999998764 5788999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCH
Q 038622 132 VNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQV 211 (587)
Q Consensus 132 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 211 (587)
+..|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|+++|++|...++.|+..++..++.++...|..
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 9999999999999999999964 799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHH
Q 038622 212 EEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEM 291 (587)
Q Consensus 212 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 291 (587)
+.+.+++..+.+.|..||..+++.++..|.+.|++++|.++|+.|. ++|..+|+.++..|.+.|+.++|.++|++|
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999986 468999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHh
Q 038622 292 ESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKF 371 (587)
Q Consensus 292 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 371 (587)
.+.|+.|+..+|+.++.+|++.|++++|.+++..|.+.|.+++..+++.++.+|++.|++++|.++|++|. .||..
T Consensus 317 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~ 392 (697)
T PLN03081 317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLI 392 (697)
T ss_pred HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999985 47899
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHH-cCCCCChHhHHHHHHHH
Q 038622 372 TYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQM-KGIVLTPQAYNPVIQAL 450 (587)
Q Consensus 372 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~ 450 (587)
+|+.++.+|.+.|+.++|.++|++|.+.|+.||..+|..++.+|...|+.++|.++|+.|.+ .++.|+..+|+.++..+
T Consensus 393 t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l 472 (697)
T PLN03081 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELL 472 (697)
T ss_pred eHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999986 48999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhH
Q 038622 451 FRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEET 529 (587)
Q Consensus 451 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 529 (587)
.+.|++++|.++++++ +..|+..+|..++.+|...|+ ++.|...++++.+ +.| +...|..|+++|.+.|++++
T Consensus 473 ~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~-~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~ 546 (697)
T PLN03081 473 GREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKN-LELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAE 546 (697)
T ss_pred HhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCC-cHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHH
Confidence 9999999999999876 368999999999999999999 9999999999986 557 57789999999999999999
Q ss_pred HHHHHHHHHhcCCCCCchhhh
Q 038622 530 LVELIDMVMDKAKFSDRETSM 550 (587)
Q Consensus 530 A~~~~~~~~~~~~~~~~~~~~ 550 (587)
|.++++.+.+.+...+...+|
T Consensus 547 A~~v~~~m~~~g~~k~~g~s~ 567 (697)
T PLN03081 547 AAKVVETLKRKGLSMHPACTW 567 (697)
T ss_pred HHHHHHHHHHcCCccCCCeeE
Confidence 999999999998765544333
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=4.6e-40 Score=351.98 Aligned_cols=557 Identities=11% Similarity=0.060 Sum_probs=343.4
Q ss_pred hHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 038622 2 KLVETAHADMVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQM 81 (587)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 81 (587)
+.|...++.+++.. |.+...+..+...+.+.|++++|...++.+.... +.++..+..++..+...|++++|...|+++
T Consensus 312 ~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 389 (899)
T TIGR02917 312 EQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKA 389 (899)
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 45677777777654 4556666677777777777777777777776654 556677777777777777777777777777
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcc
Q 038622 82 VEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVF 161 (587)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 161 (587)
.+.+ +.+...+..++..+...|++++|...++.+.+.+ +........++..+.+.|++++|.++++.+... .+++..
T Consensus 390 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~ 466 (899)
T TIGR02917 390 TELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLD-PELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNAS 466 (899)
T ss_pred HhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcH
Confidence 7664 4455666667777777777777777777776653 223344555566666667777777777666654 233455
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 038622 162 TYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLC 241 (587)
Q Consensus 162 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 241 (587)
++..++..+...|++++|...|+++...+ +.+...+..++..+...|++++|...++.+...+ +.+..++..+...+.
T Consensus 467 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 544 (899)
T TIGR02917 467 LHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYL 544 (899)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHH
Confidence 66666666666777777777776666554 3345556666666666667777766666666543 235556666666666
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 038622 242 LTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEE 321 (587)
Q Consensus 242 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 321 (587)
..|++++|..+++++...+ +.+...+..++..+...|++++|..+++.+.+.. +.+...+..++.++...|++++|..
T Consensus 545 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 622 (899)
T TIGR02917 545 RTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVS 622 (899)
T ss_pred HcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666666665543 4445555566666666666666666666665543 4455566666666666666666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 038622 322 IFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGC 401 (587)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 401 (587)
.|+.+.... +.+...+..++.++...|++++|...++++.... +.+..++..++..+...|++++|..+++.+....+
T Consensus 623 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 700 (899)
T TIGR02917 623 SFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP 700 (899)
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 666665543 3445556666666666666666666666666532 22345555566666666666666666666655432
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 038622 402 EPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHV 481 (587)
Q Consensus 402 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 481 (587)
++...+..++..+...|++++|.+.++++.... |+...+..++.++...|++++|.+.++++++.. |.+...+..+
T Consensus 701 -~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~l 776 (899)
T TIGR02917 701 -KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTAL 776 (899)
T ss_pred -CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 244455555666666666666666666665532 333455555666666666666666666666543 4455555555
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCC-chhhhhhhHHHHHHH
Q 038622 482 FRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSD-RETSMVRGFLKIRKF 560 (587)
Q Consensus 482 ~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 560 (587)
+..+...|+ +++|...|+++++.+ ++++.++..+++++...|+ .+|+.+++++++..|.+. .+..++.++...|++
T Consensus 777 a~~~~~~g~-~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 853 (899)
T TIGR02917 777 AELYLAQKD-YDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEA 853 (899)
T ss_pred HHHHHHCcC-HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH
Confidence 555555666 666666666666532 2245555666666666666 556666666666555543 244555556666666
Q ss_pred HHHHHhcchhhhccCc
Q 038622 561 QDALATFGDILDSRMP 576 (587)
Q Consensus 561 ~~A~~~~~~~~~~~~~ 576 (587)
++|+..|+++++..+.
T Consensus 854 ~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 854 DRALPLLRKAVNIAPE 869 (899)
T ss_pred HHHHHHHHHHHhhCCC
Confidence 6666666666665544
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=6.5e-40 Score=350.83 Aligned_cols=552 Identities=14% Similarity=0.118 Sum_probs=467.8
Q ss_pred hHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 038622 2 KLVETAHADMVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQM 81 (587)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 81 (587)
+.|...++.+.+.. +.+...+..+...+.+.|++++|...|+++.+.. +.+...+..++..+...|++++|+..++.+
T Consensus 346 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 423 (899)
T TIGR02917 346 DEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETA 423 (899)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 46778888888765 6678888899999999999999999999988775 567788888899999999999999999999
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcc
Q 038622 82 VEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVF 161 (587)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 161 (587)
.+.+ +........++..+.+.|++++|..+++.+... .+++..++..++..+...|++++|.+.|+++.+.. +.+..
T Consensus 424 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~ 500 (899)
T TIGR02917 424 AQLD-PELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFP 500 (899)
T ss_pred HhhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHH
Confidence 8875 445566677888899999999999999998875 36677788899999999999999999999998763 33566
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 038622 162 TYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLC 241 (587)
Q Consensus 162 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 241 (587)
.+..++..+...|++++|.+.|+++...+ +.+..++..++..+...|++++|..+++++...+ +.+...+..++..+.
T Consensus 501 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 578 (899)
T TIGR02917 501 AAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYL 578 (899)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHH
Confidence 77788888999999999999999998775 5577888889999999999999999999987764 346677888888999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 038622 242 LTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEE 321 (587)
Q Consensus 242 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 321 (587)
..|++++|..+++.+.+.. +.+...|..++.++...|++++|+..++.+.+.. +.+...+..++.++...|++++|..
T Consensus 579 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 656 (899)
T TIGR02917 579 GKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAIT 656 (899)
T ss_pred HCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999988764 6678889999999999999999999999988765 5667788889999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 038622 322 IFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGC 401 (587)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 401 (587)
.++++.... |.+...+..++..+...|++++|..+++.+.... +++...+..++..+...|++++|...++.+...+
T Consensus 657 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~- 733 (899)
T TIGR02917 657 SLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA- 733 (899)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-
Confidence 999988765 5677888889999999999999999999998864 4466778888888999999999999999988854
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 038622 402 EPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHV 481 (587)
Q Consensus 402 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 481 (587)
|+...+..++.++...|++++|.+.++++.+..+. +...+..++..+...|++++|...|+++++.. |++...+..+
T Consensus 734 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l 810 (899)
T TIGR02917 734 -PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPN-DAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNL 810 (899)
T ss_pred -CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 45577788889999999999999999998886443 67888889999999999999999999999875 6778888888
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC-CchhhhhhhHHHHHH
Q 038622 482 FRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS-DRETSMVRGFLKIRK 559 (587)
Q Consensus 482 ~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 559 (587)
+..+...|+ ++|+..++++++. .| ++..+..++.++...|++++|...++++++.+|.+ .....++.++.+.|+
T Consensus 811 ~~~~~~~~~--~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 886 (899)
T TIGR02917 811 AWLYLELKD--PRALEYAEKALKL--APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGR 886 (899)
T ss_pred HHHHHhcCc--HHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC
Confidence 888888887 6699999999884 45 67788889999999999999999999999998865 457888899999999
Q ss_pred HHHHHHhcchhhh
Q 038622 560 FQDALATFGDILD 572 (587)
Q Consensus 560 ~~~A~~~~~~~~~ 572 (587)
+++|...++++++
T Consensus 887 ~~~A~~~~~~~~~ 899 (899)
T TIGR02917 887 KAEARKELDKLLN 899 (899)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999988763
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=8.6e-33 Score=294.29 Aligned_cols=554 Identities=12% Similarity=0.069 Sum_probs=382.9
Q ss_pred hHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHH----------------HHHHHHH
Q 038622 2 KLVETAHADMVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTF----------------TTLMQGL 65 (587)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~----------------~~l~~~~ 65 (587)
+.|++.++.+.... |.|+.++..++..+.+.|+.++|.+.++++.+.. |.++... ...+..+
T Consensus 45 d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll 122 (1157)
T PRK11447 45 DLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLSTPEGRQALQQARLL 122 (1157)
T ss_pred HHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhcCCchhhHHHHHHHH
Confidence 56888888888776 6688899999999999999999999999999876 5555443 3345578
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHH
Q 038622 66 IEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQAL 145 (587)
Q Consensus 66 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 145 (587)
...|++++|++.|+++.+.+++........+.......|+.++|+..++++.+.. |.+...+..+...+...|++++|+
T Consensus 123 ~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl 201 (1157)
T PRK11447 123 ATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGF 201 (1157)
T ss_pred HhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHH
Confidence 8899999999999999987533222222222222334589999999999999874 556778888999999999999999
Q ss_pred HHHHHHHhCCC------------------C--------------CCcccH---------------------HHHHHHHHh
Q 038622 146 EVMDMMLQEGF------------------D--------------PDVFTY---------------------NSLISGLCK 172 (587)
Q Consensus 146 ~~~~~~~~~~~------------------~--------------~~~~~~---------------------~~l~~~~~~ 172 (587)
+.++++..... . |+.... ...+..+..
T Consensus 202 ~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~ 281 (1157)
T PRK11447 202 AVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVD 281 (1157)
T ss_pred HHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHH
Confidence 99988754311 0 110000 012445667
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC-CHhhH------------HHHHHH
Q 038622 173 LGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILP-DVCTF------------NSLIQG 239 (587)
Q Consensus 173 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~------------~~l~~~ 239 (587)
.|++++|+..|++++..+ +.+..++..++.++.+.|++++|+..|++..+..... ....+ ......
T Consensus 282 ~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~ 360 (1157)
T PRK11447 282 SGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDA 360 (1157)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHH
Confidence 899999999999998875 5578889999999999999999999999988764321 11111 123456
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--------
Q 038622 240 LCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFC-------- 311 (587)
Q Consensus 240 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------- 311 (587)
+...|++++|...|+++++.. +.+...+..++.++...|++++|++.|+++.+.. +.+...+..++..+.
T Consensus 361 ~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~~~~~~~A~ 438 (1157)
T PRK11447 361 ALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYRQQSPEKAL 438 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCHHHHH
Confidence 778899999999999998875 5567788888999999999999999999998765 444555555544442
Q ss_pred ----------------------------------ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038622 312 ----------------------------------KLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQL 357 (587)
Q Consensus 312 ----------------------------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 357 (587)
..|++++|++.|+++.... |.+...+..+...+.+.|++++|...
T Consensus 439 ~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~ 517 (1157)
T PRK11447 439 AFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADAL 517 (1157)
T ss_pred HHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3344444444444444432 23334444444444444444444444
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---------cchHHHHHHHHHhcCChHHHHHHH
Q 038622 358 MDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPD---------IVTYGTLIGGLCKAGRVEVASKLL 428 (587)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------~~~~~~l~~~~~~~~~~~~a~~~~ 428 (587)
+++++... +.+...+..+...+...+++++|...++.+......++ ...+..++..+...|+.++|.+++
T Consensus 518 l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l 596 (1157)
T PRK11447 518 MRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALL 596 (1157)
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence 44444321 11222222333333444444444444443322111100 001223344556666666666666
Q ss_pred HHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC
Q 038622 429 RSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFL 508 (587)
Q Consensus 429 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~ 508 (587)
+. .+.+...+..++..+...|++++|+..|+++++.. |.+...+..++..+...|+ +++|++.++++++. .
T Consensus 597 ~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~-~~eA~~~l~~ll~~--~ 667 (1157)
T PRK11447 597 RQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGD-LAAARAQLAKLPAT--A 667 (1157)
T ss_pred Hh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHhcc--C
Confidence 51 23355677888899999999999999999999874 6677888888888889988 99999999988873 4
Q ss_pred C-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCC-------chhhhhhhHHHHHHHHHHHHhcchhhh
Q 038622 509 P-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSD-------RETSMVRGFLKIRKFQDALATFGDILD 572 (587)
Q Consensus 509 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~A~~~~~~~~~ 572 (587)
| ++.....++.++...|++++|.+.+++++...|..+ ....++..+...|+.++|+..|++++.
T Consensus 668 p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 668 NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5 677788889999999999999999999988766542 234457778889999999999999875
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1e-30 Score=278.55 Aligned_cols=536 Identities=14% Similarity=0.080 Sum_probs=366.0
Q ss_pred HHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhH---------
Q 038622 23 FNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTV--------- 93 (587)
Q Consensus 23 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--------- 93 (587)
....++.....++.+.|.+.++++.... |.|+.++..++..+...|+.++|.+.++++.+.. |.+....
T Consensus 31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~-p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~ 108 (1157)
T PRK11447 31 LLEQVRLGEATHREDLVRQSLYRLELID-PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLS 108 (1157)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHccC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhc
Confidence 3455677888999999999999999886 7789999999999999999999999999999986 4343332
Q ss_pred -------HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh-HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHH
Q 038622 94 -------NVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFT-YNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNS 165 (587)
Q Consensus 94 -------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 165 (587)
..++..+...|++++|+..|+.+...+ +|+... ...+.......|+.++|++.++++.+.. +.+...+..
T Consensus 109 ~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~ 186 (1157)
T PRK11447 109 TPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNT 186 (1157)
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 344557889999999999999998764 444321 1122222334699999999999999873 335677888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCC----------------CChh---hH----------------------------
Q 038622 166 LISGLCKLGEVEEAVEILNQMILRDCS----------------PNTI---TY---------------------------- 198 (587)
Q Consensus 166 l~~~~~~~g~~~~a~~~~~~~~~~~~~----------------~~~~---~~---------------------------- 198 (587)
++..+...|++++|+..++++...... ++.. .+
T Consensus 187 LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~ 266 (1157)
T PRK11447 187 LALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLA 266 (1157)
T ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhcc
Confidence 999999999999999999987543200 0000 00
Q ss_pred ------HHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-CHHhH---
Q 038622 199 ------NTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQP-DEFTY--- 268 (587)
Q Consensus 199 ------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~--- 268 (587)
...+..+...|++++|+..+++..... +.+..++..+..++...|++++|+..|+++.+..... +...+
T Consensus 267 dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~l 345 (1157)
T PRK11447 267 DPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESL 345 (1157)
T ss_pred CcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHH
Confidence 012445566788888888888877753 2366777778888888888888888888877653111 11111
Q ss_pred ---------HHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 038622 269 ---------NMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYN 339 (587)
Q Consensus 269 ---------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 339 (587)
...+..+...|++++|+..|+++.... |.+...+..++.++...|++++|++.|+++.... |.+...+.
T Consensus 346 l~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~ 423 (1157)
T PRK11447 346 LKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVR 423 (1157)
T ss_pred HHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHH
Confidence 123455667788888888888887765 5566677777888888888888888888877664 44444444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCC--------CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHH
Q 038622 340 TLIDGLCKSRRVEDAAQLMDQMIMEGLK--------PDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTL 411 (587)
Q Consensus 340 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 411 (587)
.+...+. .++.++|..+++.+...... .....+..++..+...|++++|+..++++++..+. +...+..+
T Consensus 424 ~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~L 501 (1157)
T PRK11447 424 GLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRL 501 (1157)
T ss_pred HHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 4444432 23344444444332211000 00011223334444555555555555555554322 33444555
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChHhHH--------------------------------------------HHH
Q 038622 412 IGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYN--------------------------------------------PVI 447 (587)
Q Consensus 412 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--------------------------------------------~l~ 447 (587)
+.+|...|++++|...++++.+..+. ++..+. ..+
T Consensus 502 A~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a 580 (1157)
T PRK11447 502 AQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETA 580 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHH
Confidence 55555556666666555555543221 222222 234
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCC
Q 038622 448 QALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGK 526 (587)
Q Consensus 448 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 526 (587)
..+...|++++|+.+++ . .|++...+..++..+...|+ +++|+..|+++++. .| ++.++..++.+|...|+
T Consensus 581 ~~l~~~G~~~eA~~~l~----~-~p~~~~~~~~La~~~~~~g~-~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~ 652 (1157)
T PRK11447 581 NRLRDSGKEAEAEALLR----Q-QPPSTRIDLTLADWAQQRGD-YAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGD 652 (1157)
T ss_pred HHHHHCCCHHHHHHHHH----h-CCCCchHHHHHHHHHHHcCC-HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCC
Confidence 44555666666666655 1 25566667778888899999 99999999999984 56 78999999999999999
Q ss_pred HhHHHHHHHHHHhcCCCC-CchhhhhhhHHHHHHHHHHHHhcchhhhccCc
Q 038622 527 EETLVELIDMVMDKAKFS-DRETSMVRGFLKIRKFQDALATFGDILDSRMP 576 (587)
Q Consensus 527 ~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 576 (587)
+++|++.++++++..|.+ +....++.++...|++++|++.|++++...++
T Consensus 653 ~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~ 703 (1157)
T PRK11447 653 LAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKS 703 (1157)
T ss_pred HHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCcc
Confidence 999999999999988876 34677888899999999999999999886543
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=8.5e-28 Score=244.05 Aligned_cols=550 Identities=11% Similarity=0.014 Sum_probs=352.2
Q ss_pred hHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 038622 2 KLVETAHADMVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQM 81 (587)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 81 (587)
+.|...|+..++.. |-+..++..|..+|.+.|+.++|+..++++.+.. |.|...+..+. .. +++++|..+++++
T Consensus 61 ~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~La-~i---~~~~kA~~~ye~l 134 (987)
T PRK09782 61 ATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSLA-AI---PVEVKSVTTVEEL 134 (987)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHHH-Hh---ccChhHHHHHHHH
Confidence 46888999998887 6678889999999999999999999999999875 44444444442 22 8999999999999
Q ss_pred HHcCCCCChhhHHHHHHH--------HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH-HHHHHhcCChHHHHHHHHHHH
Q 038622 82 VEHGCLVTNVTVNVLVHG--------FCKEGRIEDALSFIQEMVSEGFNPDQFTYNTL-VNGLCKVGHVKQALEVMDMML 152 (587)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~--------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~ 152 (587)
.... |.+..++..++.. |.+. ++|...++ .......|+..+.... ...|.+.|++++|++.+.++.
T Consensus 135 ~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~ 209 (987)
T PRK09782 135 LAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEAR 209 (987)
T ss_pred HHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 9986 5566677666665 5555 44444444 3222223344444444 899999999999999999999
Q ss_pred hCCCCCCcccHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCC-CCH
Q 038622 153 QEGFDPDVFTYNSLISGLCK-LGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGIL-PDV 230 (587)
Q Consensus 153 ~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~ 230 (587)
+.++ .+......+...|.. .++ +.+..+++.. ...++..+..++..+.+.|+.++|..+++++...... |..
T Consensus 210 k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~ 283 (987)
T PRK09782 210 QQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQE 283 (987)
T ss_pred hcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCcc
Confidence 9753 345556677778877 477 7888776542 2357888999999999999999999998887543111 211
Q ss_pred hhH------------------------------HHHHHHHHhcCChHHHHHHHH--------------------------
Q 038622 231 CTF------------------------------NSLIQGLCLTSNFDVAMELFQ-------------------------- 254 (587)
Q Consensus 231 ~~~------------------------------~~l~~~~~~~~~~~~a~~~~~-------------------------- 254 (587)
..+ ..++..+.+.++++.+.++..
T Consensus 284 ~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 363 (987)
T PRK09782 284 KSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALR 363 (987)
T ss_pred HHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHH
Confidence 111 111334445555554443321
Q ss_pred ---HHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHccCC---HHHHHHH----
Q 038622 255 ---EMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSG--CARNVVTYNTLIDGFCKLKR---IEEAEEI---- 322 (587)
Q Consensus 255 ---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~---~~~a~~~---- 322 (587)
.+.+. .+-+......+.......|+.++|..+++...... ...+......++..|.+.+. ..++..+
T Consensus 364 ~~~~~y~~-~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~ 442 (987)
T PRK09782 364 LARLLYQQ-EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPL 442 (987)
T ss_pred HHHHHHhc-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcccc
Confidence 11111 02234444444455566777888888888776521 11223344456666655544 2222221
Q ss_pred ---------------------HHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 038622 323 ---------------------FDEMEIQGISR--NSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTY 379 (587)
Q Consensus 323 ---------------------~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 379 (587)
+..+... .|+ +...|..++.++.. ++.++|+..+.+.... .|+......++..
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~al~~-~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~a 518 (987)
T PRK09782 443 PLAEQRQWQSQLPGIADNCPAIVRLLGD-MSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQ 518 (987)
T ss_pred ccchhHHHHhhhhhhhhhHHHHHHhccc-CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHH
Confidence 1111111 133 55666666666665 6777777777776654 3454443334444
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHH
Q 038622 380 YCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEA 459 (587)
Q Consensus 380 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 459 (587)
+...|++++|...++++... .|....+..++.++...|++++|..+++++.+..+. ....+..++......|++++|
T Consensus 519 l~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eA 595 (987)
T PRK09782 519 AYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELA 595 (987)
T ss_pred HHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHH
Confidence 55777777777777776543 233444556666777777777777777777765322 223333344444455777777
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 038622 460 MRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVM 538 (587)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 538 (587)
+..++++++. .|+...+..++.++.+.|+ +++|+..++++++ ..| ++.++..++.++...|++++|+..+++++
T Consensus 596 l~~~~~AL~l--~P~~~a~~~LA~~l~~lG~-~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL 670 (987)
T PRK09782 596 LNDLTRSLNI--APSANAYVARATIYRQRHN-VPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAH 670 (987)
T ss_pred HHHHHHHHHh--CCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7777777764 3456667777777777777 7777777777777 345 56677777777777777777777777777
Q ss_pred hcCCCC-CchhhhhhhHHHHHHHHHHHHhcchhhhccCchhhhh
Q 038622 539 DKAKFS-DRETSMVRGFLKIRKFQDALATFGDILDSRMPRKTFR 581 (587)
Q Consensus 539 ~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 581 (587)
+..|.+ +.+..++.++...|++++|+..|+++++..+..-.+.
T Consensus 671 ~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~ 714 (987)
T PRK09782 671 KGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALIT 714 (987)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhh
Confidence 777765 3467777777777777777777777777665544443
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=100.00 E-value=2e-27 Score=241.36 Aligned_cols=525 Identities=12% Similarity=0.037 Sum_probs=380.2
Q ss_pred HHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 038622 30 LCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDA 109 (587)
Q Consensus 30 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 109 (587)
+...|++++|+..|+.+.+.. |.++.++..++..|...|++++|+..++++.+.+ |.+...+..+... +++++|
T Consensus 54 ~~~~Gd~~~A~~~l~~Al~~d-P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~La~i----~~~~kA 127 (987)
T PRK09782 54 AQKNNDEATAIREFEYIHQQV-PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSLAAI----PVEVKS 127 (987)
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHHHHh----ccChhH
Confidence 344599999999999999987 7778999999999999999999999999999985 4444444444222 899999
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHH--------HHhcCChHHHHHHHHHHHhCCCCCCcccHHHH-HHHHHhcCCHHHHH
Q 038622 110 LSFIQEMVSEGFNPDQFTYNTLVNG--------LCKVGHVKQALEVMDMMLQEGFDPDVFTYNSL-ISGLCKLGEVEEAV 180 (587)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~ 180 (587)
..+++++.+.. |.+..++..+... |.+. ++|.+.++ .......|+..+.... ...|...|++++|+
T Consensus 128 ~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai 202 (987)
T PRK09782 128 VTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQAD 202 (987)
T ss_pred HHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHH
Confidence 99999999873 4445666666665 5555 56666665 3333233445545555 89999999999999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHhc-cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038622 181 EILNQMILRDCSPNTITYNTLISTLCK-ENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTK 259 (587)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 259 (587)
..+.++.+.+ +.+......|..+|.. .++ +++..+++. ....++..+..++..+...|+.++|.++++++...
T Consensus 203 ~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~ 276 (987)
T PRK09782 203 TLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPL 276 (987)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCccc
Confidence 9999999997 5567778888888887 466 777777553 23358888999999999999999999999887643
Q ss_pred CC-CCCHHhHH------------------------------HHHHHHHccCChHHHHHHHH-------------------
Q 038622 260 GC-QPDEFTYN------------------------------MLIDSLCSRGMLEEALKLLK------------------- 289 (587)
Q Consensus 260 ~~-~~~~~~~~------------------------------~l~~~~~~~~~~~~a~~~~~------------------- 289 (587)
.. .|...+|. ..+..+.+.++++.+.++..
T Consensus 277 ~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 356 (987)
T PRK09782 277 FTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATR 356 (987)
T ss_pred ccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccC
Confidence 11 12222211 12334445555554443321
Q ss_pred ----------HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc-C-CCCCHHHHHHHHHHHHhcCC---HHHH
Q 038622 290 ----------EMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQ-G-ISRNSVTYNTLIDGLCKSRR---VEDA 354 (587)
Q Consensus 290 ----------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~---~~~A 354 (587)
.+.+. .+.+......+.-...+.|+.++|.++++..... + ...+......++..|...+. ..++
T Consensus 357 ~~~~~~~~~~~~y~~-~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 435 (987)
T PRK09782 357 NKAEALRLARLLYQQ-EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKV 435 (987)
T ss_pred chhHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHH
Confidence 11111 1224444455555566788899999999887652 1 12233344467777766654 3333
Q ss_pred HHH----------------------HHHHHHc-CC-CC--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchH
Q 038622 355 AQL----------------------MDQMIME-GL-KP--DKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTY 408 (587)
Q Consensus 355 ~~~----------------------~~~~~~~-~~-~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 408 (587)
..+ +...... +. ++ +...+..++.++.. +++++|+..+.+.... .|+....
T Consensus 436 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~ 512 (987)
T PRK09782 436 AILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQH 512 (987)
T ss_pred HHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHH
Confidence 222 2222221 11 23 56678888887776 8899999988888775 3554444
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhC
Q 038622 409 GTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNG 488 (587)
Q Consensus 409 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 488 (587)
..++..+...|++++|...++++... .|....+..++.++...|++++|..+++++++.+ ++....+..+.......
T Consensus 513 L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~ 589 (987)
T PRK09782 513 RAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIP 589 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhC
Confidence 45566667899999999999998764 4455667788899999999999999999999874 44444444444455566
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCC-chhhhhhhHHHHHHHHHHHHhc
Q 038622 489 GGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSD-RETSMVRGFLKIRKFQDALATF 567 (587)
Q Consensus 489 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~A~~~~ 567 (587)
|+ +++|...++++++ +.|+...+..++.++.+.|++++|+..++++++.+|.+. ....++.++...|++++|+..|
T Consensus 590 Gr-~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l 666 (987)
T PRK09782 590 GQ-PELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREML 666 (987)
T ss_pred CC-HHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 88 9999999999998 568889999999999999999999999999999999884 4788888999999999999999
Q ss_pred chhhhccCchhhhh
Q 038622 568 GDILDSRMPRKTFR 581 (587)
Q Consensus 568 ~~~~~~~~~~~~~~ 581 (587)
+++++..|....+.
T Consensus 667 ~~AL~l~P~~~~a~ 680 (987)
T PRK09782 667 ERAHKGLPDDPALI 680 (987)
T ss_pred HHHHHhCCCCHHHH
Confidence 99999887655443
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=2.7e-29 Score=226.27 Aligned_cols=448 Identities=15% Similarity=0.107 Sum_probs=330.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 038622 58 FTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCK 137 (587)
Q Consensus 58 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 137 (587)
...+..-..+.|++.+|.+.....-..+ +.+......+..++.+..+.+.....-...++.. +.-..+|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 4556666678888888888777666654 3344444445556666667766665554555542 4556788888888888
Q ss_pred cCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHH
Q 038622 138 VGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATEL 217 (587)
Q Consensus 138 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 217 (587)
.|++++|+..++.+++.. +.....|..++.++...|+.+.|...|.+.+..+ |....+...++..+...|+..+|...
T Consensus 129 rg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqln-P~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN-PDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred hchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC-cchhhhhcchhHHHHhhcccchhHHH
Confidence 888888888888888763 1246778888888888888888888888887764 33344556667777778888888888
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHccCChHHHHHHHHHHHHCCC
Q 038622 218 ARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPD-EFTYNMLIDSLCSRGMLEEALKLLKEMESSGC 296 (587)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 296 (587)
|.+..+... .-...|..+...+..+|+...|+..|++.++. .|+ ...|..++..|...+.++.|+..|.++....
T Consensus 207 YlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr- 282 (966)
T KOG4626|consen 207 YLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR- 282 (966)
T ss_pred HHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-
Confidence 877776522 13456777888888888888888888888876 344 6778888888888888888888888887764
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHH
Q 038622 297 ARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSL 376 (587)
Q Consensus 297 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 376 (587)
|....++..++..|...|.++-|+..|++.++.. |.-+..|+.+..++...|+..+|...|.+++... +.-....+.|
T Consensus 283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NL 360 (966)
T KOG4626|consen 283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNL 360 (966)
T ss_pred CcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHH
Confidence 5566677778888888888888888888887765 4456788888888888888888888888888742 2245567788
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-HhHHHHHHHHHhcCC
Q 038622 377 LTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTP-QAYNPVIQALFRRKR 455 (587)
Q Consensus 377 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~ 455 (587)
+..+...|.++.|..+|....+..+. -....+.|+..|-++|++++|+..++++++ +.|+. .+++.++..|...|+
T Consensus 361 gni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhh
Confidence 88888888888888888888774222 355677888888888888888888888887 55554 678888888888888
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 038622 456 TTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPE-FSSFYMLAEGLV 522 (587)
Q Consensus 456 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 522 (587)
.+.|+..|.+++..+ |.-......++..+...|+ ..+|++.|+.+++ ++|| ++++.+++.++.
T Consensus 438 v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGn-i~~AI~sY~~aLk--lkPDfpdA~cNllh~lq 501 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGN-IPEAIQSYRTALK--LKPDFPDAYCNLLHCLQ 501 (966)
T ss_pred HHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCC-cHHHHHHHHHHHc--cCCCCchhhhHHHHHHH
Confidence 888888888888743 3334566777777778887 8888888888887 5674 667766666554
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-29 Score=226.01 Aligned_cols=444 Identities=13% Similarity=0.097 Sum_probs=374.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 038622 92 TVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLC 171 (587)
Q Consensus 92 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 171 (587)
....|+.-..+.|++.+|++.-...-..+ +.+......+...+.+..+.+.....-....+.. +.-.++|..++..+-
T Consensus 50 ~~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~k 127 (966)
T KOG4626|consen 50 DRLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILK 127 (966)
T ss_pred hHHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHH
Confidence 35667777889999999999887766553 4444455566677777777777776666666542 335789999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHh-hHHHHHHHHHhcCChHHHH
Q 038622 172 KLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVC-TFNSLIQGLCLTSNFDVAM 250 (587)
Q Consensus 172 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~ 250 (587)
..|++++|+..|+.+++.. +....+|..++.++...|+.+.|.+.|...+.. .|+.. ....+...+-..|..++|.
T Consensus 128 erg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 128 ERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred HhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhH
Confidence 9999999999999999986 558889999999999999999999999998875 34433 3344556666789999999
Q ss_pred HHHHHHHHcCCCCC-HHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 038622 251 ELFQEMKTKGCQPD-EFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQ 329 (587)
Q Consensus 251 ~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 329 (587)
..|.+.+.. .|. ...|..++..+...|+...|+..|+++.+.+ |.-..+|..++..|...+.++.|+..|.++...
T Consensus 205 ~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l 281 (966)
T KOG4626|consen 205 ACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNL 281 (966)
T ss_pred HHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc
Confidence 999999876 344 6789999999999999999999999999886 556788999999999999999999999998876
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchH
Q 038622 330 GISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPD-KFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTY 408 (587)
Q Consensus 330 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 408 (587)
. |.....+..+...|...|..+-|+..|+++++. .|+ ...|+.+..++-..|+..+|...|.+.+...+. .....
T Consensus 282 r-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam 357 (966)
T KOG4626|consen 282 R-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAM 357 (966)
T ss_pred C-CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHH
Confidence 4 556677888888899999999999999999984 555 458999999999999999999999999986332 46788
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHH
Q 038622 409 GTLIGGLCKAGRVEVASKLLRSIQMKGIVLT-PQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPD-ALTYKHVFRGLC 486 (587)
Q Consensus 409 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 486 (587)
+.|+..+...|.+++|..+|....+. .|. ....+.++..|-.+|++++|+..|+++++. .|+ ...+..++..|.
T Consensus 358 ~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~k 433 (966)
T KOG4626|consen 358 NNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYK 433 (966)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHH
Confidence 99999999999999999999999984 344 468899999999999999999999999984 555 567899999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC-CchhhhhhhH
Q 038622 487 NGGGPIGEAVDFVIEMLERGFLPE-FSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS-DRETSMVRGF 554 (587)
Q Consensus 487 ~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~ 554 (587)
..|+ .+.|+..+.+++. +.|. .++..+|+.+|...|+..+|++.|+.+++..|+. +....+..++
T Consensus 434 e~g~-v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 434 EMGD-VSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCL 500 (966)
T ss_pred Hhhh-HHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHH
Confidence 9999 9999999999998 6784 7899999999999999999999999999999986 4555555443
No 15
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-27 Score=225.73 Aligned_cols=566 Identities=14% Similarity=0.084 Sum_probs=419.5
Q ss_pred hHHHHHHHHHHhCCCCCCHhhHHHHHHHH--HHcCChhhHHHHHHhhccCC--CCCCHHHHHHHHHHHHhcCChhHHHHH
Q 038622 2 KLVETAHADMVSRGIKPDVSTFNILIKAL--CKAHQIRPAILMMEEMPGYG--LAPDERTFTTLMQGLIEEGNLDGALRI 77 (587)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~ 77 (587)
+.|-+.|.-.++.. |+|. ...|++++ ...|++..|..+|+.++..+ .++|+ ...+..++.+.|+.+.|+..
T Consensus 147 ~~A~a~F~~Vl~~s-p~Ni--l~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~--rIgig~Cf~kl~~~~~a~~a 221 (1018)
T KOG2002|consen 147 DDADAQFHFVLKQS-PDNI--LALLGKARIAYNKKDYRGALKYYKKALRINPACKADV--RIGIGHCFWKLGMSEKALLA 221 (1018)
T ss_pred HHHHHHHHHHHhhC-Ccch--HHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCc--cchhhhHHHhccchhhHHHH
Confidence 45667777777765 5553 33444554 55789999999999976553 23443 44556778889999999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 038622 78 REQMVEHGCLVTNVTVNVLVHGFCKEG---RIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQE 154 (587)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 154 (587)
|+++.+.+ |....++..|...-.... .+..+..++...-..+ +-++.+.+.|...+.-.|+++.+..+..-+...
T Consensus 222 ~~ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~ 299 (1018)
T KOG2002|consen 222 FERALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKN 299 (1018)
T ss_pred HHHHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 99999886 344555555544433333 3566777777766653 556777888899999999999999999888775
Q ss_pred CCC--CCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhh
Q 038622 155 GFD--PDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCT 232 (587)
Q Consensus 155 ~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 232 (587)
... .-...|..++++|-..|++++|..+|.+....+.....-.+..++..+...|+++.+...|+.+.+.. +.+..+
T Consensus 300 t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~et 378 (1018)
T KOG2002|consen 300 TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYET 378 (1018)
T ss_pred hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHH
Confidence 311 12456888999999999999999999998877523225567788999999999999999999998863 446677
Q ss_pred HHHHHHHHHhcC----ChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHH----HCCCCCCHHHHH
Q 038622 233 FNSLIQGLCLTS----NFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEME----SSGCARNVVTYN 304 (587)
Q Consensus 233 ~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~ 304 (587)
...++..|...+ ..+.|..++.+..... +.|...|..++..+...+.+.. +..|..+. ..+.++.+...+
T Consensus 379 m~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LN 456 (1018)
T KOG2002|consen 379 MKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLN 456 (1018)
T ss_pred HHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHH
Confidence 777777777664 4577788888777664 6678888888888776654444 77776654 344457788899
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHc---CCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-hhHH
Q 038622 305 TLIDGFCKLKRIEEAEEIFDEMEIQ---GISR------NSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDK-FTYN 374 (587)
Q Consensus 305 ~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~ 374 (587)
.++..+...|+++.|...|...... ...+ +..+-..+..+....++++.|.+.|..++.. .|.- ..|.
T Consensus 457 Nvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~yl 534 (1018)
T KOG2002|consen 457 NVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYL 534 (1018)
T ss_pred hHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHH
Confidence 9999999999999999999887654 1111 2223445667777888999999999999885 3443 3455
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChHhHHHHHHHHHh-
Q 038622 375 SLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKG-IVLTPQAYNPVIQALFR- 452 (587)
Q Consensus 375 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~- 452 (587)
.++......++..+|...++.+...+- .++..+..++..+....++..|.+-|+.+.+.- ..+|..+...|+..+..
T Consensus 535 Rl~~ma~~k~~~~ea~~~lk~~l~~d~-~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~ 613 (1018)
T KOG2002|consen 535 RLGCMARDKNNLYEASLLLKDALNIDS-SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQA 613 (1018)
T ss_pred HhhHHHHhccCcHHHHHHHHHHHhccc-CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHH
Confidence 555444556788889999998887533 366777778888888888888888777776651 22355555566665542
Q ss_pred -----------cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038622 453 -----------RKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGL 521 (587)
Q Consensus 453 -----------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 521 (587)
.+..++|+++|.++++.+ |.+...-+.++..++..|+ +.+|..+|.+..+.. ....++|.+++.+|
T Consensus 614 l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~-~~~A~dIFsqVrEa~-~~~~dv~lNlah~~ 690 (1018)
T KOG2002|consen 614 LHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGR-FSEARDIFSQVREAT-SDFEDVWLNLAHCY 690 (1018)
T ss_pred hcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccC-chHHHHHHHHHHHHH-hhCCceeeeHHHHH
Confidence 345788888999888875 6677777778888888888 999999999988753 44678899999999
Q ss_pred HccCCHhHHHHHHHHHHhcCCCC---CchhhhhhhHHHHHHHHHHHHhcchhhhccCchhhhhhc
Q 038622 522 VSLGKEETLVELIDMVMDKAKFS---DRETSMVRGFLKIRKFQDALATFGDILDSRMPRKTFRSR 583 (587)
Q Consensus 522 ~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 583 (587)
..+|+|..|+++|+..++....+ +...-|+++++..|.+.+|.+...++....|....|.|+
T Consensus 691 ~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN 755 (1018)
T KOG2002|consen 691 VEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFN 755 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhH
Confidence 99999999999999988877644 346788889999999999999999999998888887775
No 16
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.98 E-value=1.8e-26 Score=218.92 Aligned_cols=562 Identities=14% Similarity=0.085 Sum_probs=436.7
Q ss_pred HHHHHHHHHHhCC--CCCCHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHh---cCChhHHHHH
Q 038622 3 LVETAHADMVSRG--IKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIE---EGNLDGALRI 77 (587)
Q Consensus 3 ~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~ 77 (587)
.|..+|...+..+ .+||+ ...+..++++.|+.+.|...|+++.+.+ |.++.++..|...-.. ...+..+...
T Consensus 182 ~al~yyk~al~inp~~~aD~--rIgig~Cf~kl~~~~~a~~a~~ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~l 258 (1018)
T KOG2002|consen 182 GALKYYKKALRINPACKADV--RIGIGHCFWKLGMSEKALLAFERALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQL 258 (1018)
T ss_pred HHHHHHHHHHhcCcccCCCc--cchhhhHHHhccchhhHHHHHHHHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 5677888866543 34443 3345577789999999999999999886 5566666665544433 3456778888
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 038622 78 REQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFN--PDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEG 155 (587)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 155 (587)
+..+...+ +.++.+.+.|...+.-.|+++.+..+...+...... .-...|..+++.|-..|++++|..+|-+..+..
T Consensus 259 l~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~ 337 (1018)
T KOG2002|consen 259 LQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD 337 (1018)
T ss_pred HHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC
Confidence 88887776 678889999999999999999999999998875311 123468889999999999999999999998863
Q ss_pred CCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccC----CHHHHHHHHHHHHhCCCCCCHh
Q 038622 156 FDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKEN----QVEEATELARVLTSKGILPDVC 231 (587)
Q Consensus 156 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~ 231 (587)
...-...+..++..+...|+++.+...|+.+.... |.+..+...|+..|...+ ..+.|..++.+..+.. +.|..
T Consensus 338 ~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~ 415 (1018)
T KOG2002|consen 338 NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSE 415 (1018)
T ss_pred CCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHH
Confidence 22224566778999999999999999999999885 667888888999888775 5677778887777763 44778
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHH----HcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHC---CC------CC
Q 038622 232 TFNSLIQGLCLTSNFDVAMELFQEMK----TKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESS---GC------AR 298 (587)
Q Consensus 232 ~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~------~~ 298 (587)
.|..+...+.....+ .++.+|..+. ..+.++.+...+.++..+...|++.+|...|..+... .. .+
T Consensus 416 a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~ 494 (1018)
T KOG2002|consen 416 AWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKST 494 (1018)
T ss_pred HHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccc
Confidence 888887776555444 4477777665 3444577889999999999999999999999988664 11 12
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 038622 299 NVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLT 378 (587)
Q Consensus 299 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 378 (587)
+...-..++.+.-..++++.|.+.|..+.... |.-...|..++......++..+|...++.+... ...++..+..++.
T Consensus 495 ~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~-d~~np~arsl~G~ 572 (1018)
T KOG2002|consen 495 NLTLKYNLARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNI-DSSNPNARSLLGN 572 (1018)
T ss_pred hhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc-ccCCcHHHHHHHH
Confidence 33345678888888999999999999998874 444556666664555668889999999999875 3446677778888
Q ss_pred HHHhcCCHHHHHHHHHHHHHC-CCCCCcchHHHHHHHHHh------------cCChHHHHHHHHHHHHcCCCCChHhHHH
Q 038622 379 YYCRAGDIKRAADIVQNMTSN-GCEPDIVTYGTLIGGLCK------------AGRVEVASKLLRSIQMKGIVLTPQAYNP 445 (587)
Q Consensus 379 ~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 445 (587)
.+.....+..|.+-|..+.+. ...+|..+...|+..|.. .+..++|+.+|.++++.++. |..+-+.
T Consensus 573 ~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANG 651 (1018)
T KOG2002|consen 573 LHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANG 651 (1018)
T ss_pred HHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccc
Confidence 899888999999877777664 223577777778886653 34578899999999886544 6677789
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcc
Q 038622 446 VIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSL 524 (587)
Q Consensus 446 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 524 (587)
++-+++..|++.+|..+|.+..+.. .....+|.+++.+|...|+ |..|++.|+.+++.-... +..+...|++++++.
T Consensus 652 IgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~q-y~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~ 729 (1018)
T KOG2002|consen 652 IGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQ-YRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEA 729 (1018)
T ss_pred hhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHH-HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999874 4566788899999999999 999999999999763333 789999999999999
Q ss_pred CCHhHHHHHHHHHHhcCCCCCc-hhhhhhhHH-------------------HHHHHHHHHHhcchhhhccCc
Q 038622 525 GKEETLVELIDMVMDKAKFSDR-ETSMVRGFL-------------------KIRKFQDALATFGDILDSRMP 576 (587)
Q Consensus 525 g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~-------------------~~~~~~~A~~~~~~~~~~~~~ 576 (587)
|++.+|.+++..+....|.+.. .+.++.+.. ..+.++.|.+.|..+.....+
T Consensus 730 ~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 730 GKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred hhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999998754 444444433 345777888888888776655
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.96 E-value=7.1e-24 Score=212.60 Aligned_cols=432 Identities=14% Similarity=0.045 Sum_probs=301.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 038622 93 VNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCK 172 (587)
Q Consensus 93 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 172 (587)
+...+..+.+.|++++|+..|++++.. .|+...|..+..+|.+.|++++|++.++.+++.. +.+..++..++.++..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 445677788888888888888888875 5677778888888888888888888888888753 2246677788888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHH
Q 038622 173 LGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMEL 252 (587)
Q Consensus 173 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 252 (587)
.|++++|+..|..+...+.. +......++..... ..+........+.. +++...+..+...+ ..........-
T Consensus 207 lg~~~eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~ 279 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGF-RNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGNYL-QSFRPKPRPAG 279 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHHHH-HHccCCcchhh
Confidence 88888888888766544311 11111111111111 12223333333321 22222233232222 11111111111
Q ss_pred HHHHHHcCCCCC-HHhHHHHHHHH---HccCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 038622 253 FQEMKTKGCQPD-EFTYNMLIDSL---CSRGMLEEALKLLKEMESSG--CARNVVTYNTLIDGFCKLKRIEEAEEIFDEM 326 (587)
Q Consensus 253 ~~~~~~~~~~~~-~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 326 (587)
+...... .+. ...+..+...+ ...+.+++|++.|+.+...+ .+.....+..++.++...|++++|+..+++.
T Consensus 280 ~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ka 357 (615)
T TIGR00990 280 LEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKS 357 (615)
T ss_pred hhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2211111 111 11122222211 23468899999999998764 2345567888888999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcc
Q 038622 327 EIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIV 406 (587)
Q Consensus 327 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 406 (587)
.... |.....|..++..+...|++++|...+++++... +.+...+..++.++...|++++|...|++.+...+. +..
T Consensus 358 l~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~ 434 (615)
T TIGR00990 358 IELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIF 434 (615)
T ss_pred HHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHH
Confidence 8775 5567788889999999999999999999998863 335778889999999999999999999999986433 566
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH------HHH
Q 038622 407 TYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALT------YKH 480 (587)
Q Consensus 407 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------~~~ 480 (587)
.+..++.++...|++++|+..++++....+. ++..++.++.++...|++++|++.|++++... +.+... +..
T Consensus 435 ~~~~la~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~-p~~~~~~~~~~~l~~ 512 (615)
T TIGR00990 435 SHIQLGVTQYKEGSIASSMATFRRCKKNFPE-APDVYNYYGELLLDQNKFDEAIEKFDTAIELE-KETKPMYMNVLPLIN 512 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CccccccccHHHHHH
Confidence 7888899999999999999999999886433 57889999999999999999999999999863 211111 111
Q ss_pred HHHHH-HhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC
Q 038622 481 VFRGL-CNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS 544 (587)
Q Consensus 481 l~~~~-~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 544 (587)
.+..+ ...|+ +++|..+++++++. .| +..++..+++++.+.|++++|+.+++++.+..+..
T Consensus 513 ~a~~~~~~~~~-~~eA~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~ 575 (615)
T TIGR00990 513 KALALFQWKQD-FIEAENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTE 575 (615)
T ss_pred HHHHHHHHhhh-HHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccH
Confidence 12223 33577 99999999999984 56 56678899999999999999999999999887653
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.96 E-value=3.1e-24 Score=215.14 Aligned_cols=434 Identities=13% Similarity=0.009 Sum_probs=319.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHh
Q 038622 127 TYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLC 206 (587)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 206 (587)
.+...+..+.+.|++++|+..|++++.. .|+...|..+..+|.+.|++++|+..+++++..+ +.+..++..++.++.
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 4567788899999999999999999885 5677888999999999999999999999999886 557789999999999
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHH
Q 038622 207 KENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALK 286 (587)
Q Consensus 207 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 286 (587)
..|++++|+..+..+...+.. +......++..... ..+........... +++...+..+...+ ..........
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~~~-~~~~~~~~~~ 278 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGF-RNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGNYL-QSFRPKPRPA 278 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHHHH-HHccCCcchh
Confidence 999999999888776554211 22212222222211 22333333333332 33333333333322 1111222222
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHH---HccCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038622 287 LLKEMESSGCARNVVTYNTLIDGF---CKLKRIEEAEEIFDEMEIQG--ISRNSVTYNTLIDGLCKSRRVEDAAQLMDQM 361 (587)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 361 (587)
-+....... +.....+..+...+ ...+++++|.+.|+.+...+ .+.....+..++..+...|++++|+..++++
T Consensus 279 ~~~~~~~~~-~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ka 357 (615)
T TIGR00990 279 GLEDSNELD-EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKS 357 (615)
T ss_pred hhhcccccc-cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 222221111 01111112222111 23478999999999998764 2345567888888999999999999999999
Q ss_pred HHcCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 038622 362 IMEGLKPD-KFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTP 440 (587)
Q Consensus 362 ~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 440 (587)
+.. .|+ ...+..++.++...|++++|...++++++.++. +...+..++.++...|++++|...|+++++..+. +.
T Consensus 358 l~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~ 433 (615)
T TIGR00990 358 IEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FI 433 (615)
T ss_pred HHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CH
Confidence 985 444 557888899999999999999999999886433 5778999999999999999999999999986443 56
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC-HHH------
Q 038622 441 QAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPE-FSS------ 513 (587)
Q Consensus 441 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~------ 513 (587)
..+..++.++...|++++|+..|+++++.. |.+...+..++..+...|+ +++|++.|+++++. .|+ ...
T Consensus 434 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~-~~~A~~~~~~Al~l--~p~~~~~~~~~~~ 509 (615)
T TIGR00990 434 FSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNK-FDEAIEKFDTAIEL--EKETKPMYMNVLP 509 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccC-HHHHHHHHHHHHhc--CCccccccccHHH
Confidence 788899999999999999999999999863 6677888899999999999 99999999999984 342 111
Q ss_pred HHHHH-HHHHccCCHhHHHHHHHHHHhcCCCCC-chhhhhhhHHHHHHHHHHHHhcchhhhccCchhh
Q 038622 514 FYMLA-EGLVSLGKEETLVELIDMVMDKAKFSD-RETSMVRGFLKIRKFQDALATFGDILDSRMPRKT 579 (587)
Q Consensus 514 ~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 579 (587)
+...+ ..+...|++++|...++++++.+|... .+..++.++.+.|++++|+..|+++.+.....++
T Consensus 510 l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 510 LINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 11222 233457999999999999999998775 4788999999999999999999999887765433
No 19
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.95 E-value=1.8e-23 Score=208.45 Aligned_cols=363 Identities=11% Similarity=0.040 Sum_probs=252.4
Q ss_pred HhcCCHHHHHHHHHHHHhC--CCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHH
Q 038622 171 CKLGEVEEAVEILNQMILR--DCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDV 248 (587)
Q Consensus 171 ~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 248 (587)
.+..+|+.-.-++....+. +...+..-...++..+.+.|++++|..+++........ +...+..++.+....|+++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHH
Confidence 3445555544444433322 11123334455666777788888888888877776333 45566666667777888888
Q ss_pred HHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 038622 249 AMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEI 328 (587)
Q Consensus 249 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 328 (587)
|...++++.... |.+...+..++..+...|++++|+..++++.... |.+...+..++.++...|++++|...++.+..
T Consensus 95 A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 95 VLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 888888887764 5556777777888888888888888888887764 55666777778888888888888888877765
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchH
Q 038622 329 QGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTY 408 (587)
Q Consensus 329 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 408 (587)
.. |.+...+..+ ..+...|++++|...+++++.....++......++.++...|++++|...++++....+. +...+
T Consensus 173 ~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~ 249 (656)
T PRK15174 173 EV-PPRGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALR 249 (656)
T ss_pred hC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHH
Confidence 54 3333344333 346677888888888888776532233444445566777888888888888888775433 45667
Q ss_pred HHHHHHHHhcCChHH----HHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 038622 409 GTLIGGLCKAGRVEV----ASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRG 484 (587)
Q Consensus 409 ~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 484 (587)
..++.++...|++++ |...++++....+. +...+..++..+...|++++|+..++++++.. |.+...+..++.+
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~ 327 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARA 327 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 778888888888775 78888888775433 55677888888888888888888888888764 5556666677777
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC
Q 038622 485 LCNGGGPIGEAVDFVIEMLERGFLPE-FSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS 544 (587)
Q Consensus 485 ~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 544 (587)
+...|+ +++|+..++++++. .|+ ...+..++.++...|++++|+..++++++..|+.
T Consensus 328 l~~~G~-~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 328 LRQVGQ-YTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred HHHCCC-HHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 888888 88888888888873 453 4445556777888888888888888888888765
No 20
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.95 E-value=8.2e-21 Score=172.99 Aligned_cols=546 Identities=13% Similarity=0.059 Sum_probs=298.1
Q ss_pred hHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHH------
Q 038622 2 KLVETAHADMVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGAL------ 75 (587)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~------ 75 (587)
..|+.++....+.+ |.++..|.+-.+.--..|++..|..+...-.+. ++.+..+|...++ ....+.|.
T Consensus 268 kKaR~llKSvretn-P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvWLeaiR----Lhp~d~aK~vvA~A 341 (913)
T KOG0495|consen 268 KKARLLLKSVRETN-PKHPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVWLEAIR----LHPPDVAKTVVANA 341 (913)
T ss_pred HHHHHHHHHHHhcC-CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHHHHHHh----cCChHHHHHHHHHH
Confidence 46888999888877 778889988888888889999888877655433 1444445543322 22233333
Q ss_pred -------------------------HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHH
Q 038622 76 -------------------------RIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNT 130 (587)
Q Consensus 76 -------------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 130 (587)
++++++++. +|.+...|. +.....+.++|+.++.++.+. ++.+. .
T Consensus 342 vr~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~-iP~sv~LWK----aAVelE~~~darilL~rAvec-cp~s~----d 411 (913)
T KOG0495|consen 342 VRFLPTSVRLWLKAADLESDTKNKKRVLRKALEH-IPRSVRLWK----AAVELEEPEDARILLERAVEC-CPQSM----D 411 (913)
T ss_pred HHhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHh-CCchHHHHH----HHHhccChHHHHHHHHHHHHh-ccchH----H
Confidence 334444433 233333332 223344455566666666554 22222 2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHH----hCCCCCChhhHHHHHHHHh
Q 038622 131 LVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMI----LRDCSPNTITYNTLISTLC 206 (587)
Q Consensus 131 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~ 206 (587)
|..++.+..-++.|.+++.++.+. ++.+...|..-...-...|+.+...+++.+.+ ..|+..+...|..=+..+-
T Consensus 412 LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e 490 (913)
T KOG0495|consen 412 LWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACE 490 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHh
Confidence 334455566677777777777664 45566666666666666677776666665543 2244445555555555555
Q ss_pred ccCCHHHHHHHHHHHHhCCCCC--CHhhHHHHHHHHHhcCChHHHHHHHHHHHHcC------------------------
Q 038622 207 KENQVEEATELARVLTSKGILP--DVCTFNSLIQGLCLTSNFDVAMELFQEMKTKG------------------------ 260 (587)
Q Consensus 207 ~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------------------ 260 (587)
..|..--+..+.......|+.. ...+|..-...|.+.+.++-|..+|...++.-
T Consensus 491 ~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~ 570 (913)
T KOG0495|consen 491 DAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLE 570 (913)
T ss_pred hcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHH
Confidence 5555555555554444443331 12344444444555555555555555444431
Q ss_pred ---------CCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 038622 261 ---------CQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGI 331 (587)
Q Consensus 261 ---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 331 (587)
++.....|...+..+-..|+...|..++..+.+.. +.+...|...+.......+++.|..+|.+....
T Consensus 571 Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~-- 647 (913)
T KOG0495|consen 571 ALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI-- 647 (913)
T ss_pred HHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--
Confidence 12223333333444444445555555544444433 334444444444444444555555555444432
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHH
Q 038622 332 SRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPD-KFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGT 410 (587)
Q Consensus 332 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 410 (587)
.++..+|..-+....-.++.++|.+++++.++. -|+ ...|..+++.+-+.++.+.|...|..-.+. ++.....|..
T Consensus 648 sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWll 724 (913)
T KOG0495|consen 648 SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLL 724 (913)
T ss_pred CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHH
Confidence 234444444443333444455555555554442 222 223444444455555555555544444332 1113334444
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Q 038622 411 LIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGG 490 (587)
Q Consensus 411 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 490 (587)
+...-.+.|.+-.|..++++..-+++. +...|...++.-.+.|+.+.|..+..++++. .|.+...|..-+....+.++
T Consensus 725 LakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~r 802 (913)
T KOG0495|consen 725 LAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQR 802 (913)
T ss_pred HHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCccc
Confidence 444444455555555555555544433 4445555555555555555555555555543 24444444444443333333
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC-CchhhhhhhHHHHHHHHHHHHhcch
Q 038622 491 PIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS-DRETSMVRGFLKIRKFQDALATFGD 569 (587)
Q Consensus 491 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~ 569 (587)
-...++.+++ +..|+.++...+..++...+++.|+++|+++++.+|+. |+|......+.++|.-++-...+++
T Consensus 803 -kTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~ 876 (913)
T KOG0495|consen 803 -KTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKK 876 (913)
T ss_pred -chHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 2333333222 45577888889999999999999999999999999987 7888888889999999999999988
Q ss_pred hhhccCchh
Q 038622 570 ILDSRMPRK 578 (587)
Q Consensus 570 ~~~~~~~~~ 578 (587)
.....|.-+
T Consensus 877 c~~~EP~hG 885 (913)
T KOG0495|consen 877 CETAEPTHG 885 (913)
T ss_pred HhccCCCCC
Confidence 887765543
No 21
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.94 E-value=3e-22 Score=204.38 Aligned_cols=419 Identities=13% Similarity=0.034 Sum_probs=241.3
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHH
Q 038622 87 LVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSL 166 (587)
Q Consensus 87 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 166 (587)
+.++....-.+.+....|+.++|++++.+..... +.+...+..++..+...|++++|.++|+++++.. +.+...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 3344444444455555555555555555554421 3333345555555555555555555555555431 2233444455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCh
Q 038622 167 ISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNF 246 (587)
Q Consensus 167 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 246 (587)
+.++...|++++|+..+++++... +.+.. +..++.++...|+.++|+..++++.+..+ .+...+..+..++...+..
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCh
Confidence 555555555555555555555543 33344 55555555555555555555555555421 1333344444444455555
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----HccCCH---HH
Q 038622 247 DVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGF-----CKLKRI---EE 318 (587)
Q Consensus 247 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~---~~ 318 (587)
+.|++.++.+.. .|+.. .. + .......++... ...+++ ++
T Consensus 167 e~Al~~l~~~~~---~p~~~--~~--------------l-------------~~~~~~~~~r~~~~~~~~~~~r~~~ad~ 214 (765)
T PRK10049 167 APALGAIDDANL---TPAEK--RD--------------L-------------EADAAAELVRLSFMPTRSEKERYAIADR 214 (765)
T ss_pred HHHHHHHHhCCC---CHHHH--HH--------------H-------------HHHHHHHHHHhhcccccChhHHHHHHHH
Confidence 555555543332 11100 00 0 000001111111 111223 55
Q ss_pred HHHHHHHHHHcC-CCCCH-HHH----HHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHhhHHHHHHHHHhcCCHHHHHH
Q 038622 319 AEEIFDEMEIQG-ISRNS-VTY----NTLIDGLCKSRRVEDAAQLMDQMIMEGLK-PDKFTYNSLLTYYCRAGDIKRAAD 391 (587)
Q Consensus 319 a~~~~~~~~~~~-~~~~~-~~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~ 391 (587)
|+..++.+.... ..|+. ..+ ...+.++...|++++|+..|+++...+.+ |+. ....+..++...|++++|..
T Consensus 215 Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~ 293 (765)
T PRK10049 215 ALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQS 293 (765)
T ss_pred HHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHH
Confidence 666666665431 11111 111 11123345567777788777777765321 221 12224566777778888888
Q ss_pred HHHHHHHCCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCC-----------CCC---hHhHHHHHHHHHhcC
Q 038622 392 IVQNMTSNGCEP---DIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGI-----------VLT---PQAYNPVIQALFRRK 454 (587)
Q Consensus 392 ~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g 454 (587)
.|+++....... .......+..++...|++++|..+++.+....+ .|+ ...+..++..+...|
T Consensus 294 ~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g 373 (765)
T PRK10049 294 ILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSN 373 (765)
T ss_pred HHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcC
Confidence 877776542211 123345556667777888888888777776421 122 134567788888999
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHH
Q 038622 455 RTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVEL 533 (587)
Q Consensus 455 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 533 (587)
++++|++++++++... |.+...+..++..+...|+ +++|++.++++++ +.| +..++..++..+...|++++|...
T Consensus 374 ~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~-~~~A~~~l~~al~--l~Pd~~~l~~~~a~~al~~~~~~~A~~~ 449 (765)
T PRK10049 374 DLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGW-PRAAENELKKAEV--LEPRNINLEVEQAWTALDLQEWRQMDVL 449 (765)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHh--hCCCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 9999999999998874 6677788888888888999 9999999999998 457 688888999999999999999999
Q ss_pred HHHHHhcCCCCCch
Q 038622 534 IDMVMDKAKFSDRE 547 (587)
Q Consensus 534 ~~~~~~~~~~~~~~ 547 (587)
++++++..|++...
T Consensus 450 ~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 450 TDDVVAREPQDPGV 463 (765)
T ss_pred HHHHHHhCCCCHHH
Confidence 99999999987543
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.94 E-value=7.5e-22 Score=196.97 Aligned_cols=329 Identities=13% Similarity=0.088 Sum_probs=154.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 038622 166 LISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSN 245 (587)
Q Consensus 166 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 245 (587)
++..+.+.|++++|..+++..+... +.+..++..++.+....|++++|...++++.... +.+...+..+...+...|+
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~ 125 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQ 125 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCC
Confidence 3344444455555555555444443 2233444444444444555555555555554432 1233444444445555555
Q ss_pred hHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 038622 246 FDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDE 325 (587)
Q Consensus 246 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 325 (587)
+++|...++++.+.. +.+...+..++.++...|++++|...++.+.... +.+...+..+ ..+...|++++|...++.
T Consensus 126 ~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~~~~~ 202 (656)
T PRK15174 126 YATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHDLARA 202 (656)
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHHHHHH
Confidence 555555555554432 2334444445555555555555555555444332 2222222222 224444555555555555
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHH----HHHHHHHHHHCCC
Q 038622 326 MEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKR----AADIVQNMTSNGC 401 (587)
Q Consensus 326 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----A~~~~~~~~~~~~ 401 (587)
+......++......++.++...|++++|+..+++++... +.+...+..++..+...|++++ |...++++....+
T Consensus 203 ~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P 281 (656)
T PRK15174 203 LLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS 281 (656)
T ss_pred HHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC
Confidence 4443222222222333444455555555555555555432 1233444445555555555543 4555555555322
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 038622 402 EPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHV 481 (587)
Q Consensus 402 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 481 (587)
. +...+..++..+...|++++|...++++....+. +...+..++.++...|++++|+..|+++...+ |.+...+..+
T Consensus 282 ~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~-P~~~~~~~~~ 358 (656)
T PRK15174 282 D-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK-GVTSKWNRYA 358 (656)
T ss_pred C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-ccchHHHHHH
Confidence 2 3445555555555555555555555555554322 33445555555555555555555555555532 2222222223
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHH
Q 038622 482 FRGLCNGGGPIGEAVDFVIEMLE 504 (587)
Q Consensus 482 ~~~~~~~~~~~~~A~~~~~~~~~ 504 (587)
+.++...|+ +++|+..|+++++
T Consensus 359 a~al~~~G~-~deA~~~l~~al~ 380 (656)
T PRK15174 359 AAALLQAGK-TSEAESVFEHYIQ 380 (656)
T ss_pred HHHHHHCCC-HHHHHHHHHHHHH
Confidence 444555555 5555555555554
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.94 E-value=2.8e-22 Score=204.55 Aligned_cols=423 Identities=12% Similarity=0.063 Sum_probs=270.7
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 038622 122 NPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTL 201 (587)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 201 (587)
+.+.....-.+.+....|+.++|++++.++.... +.+...+..++..+...|++++|..+|++++... |.+...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 3344444455555666666666666666665421 2233345566666666666666666666666553 3345555566
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCCh
Q 038622 202 ISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGML 281 (587)
Q Consensus 202 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 281 (587)
+.++...|++++|+..++++.+.. +.+.. +..+..++...|++++|+..++++.+.. |.+...+..++.++...+..
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCh
Confidence 666666666666666666665542 22344 5555556666666666666666666553 33444555555555555666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH---HHHHHHH
Q 038622 282 EEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRV---EDAAQLM 358 (587)
Q Consensus 282 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~ 358 (587)
+.|+..++.+.. .|+. ...+ ....+...... .+.......+++ ++|+..+
T Consensus 167 e~Al~~l~~~~~---~p~~--~~~l--------~~~~~~~~~r~--------------~~~~~~~~~~r~~~ad~Al~~~ 219 (765)
T PRK10049 167 APALGAIDDANL---TPAE--KRDL--------EADAAAELVRL--------------SFMPTRSEKERYAIADRALAQY 219 (765)
T ss_pred HHHHHHHHhCCC---CHHH--HHHH--------HHHHHHHHHHh--------------hcccccChhHHHHHHHHHHHHH
Confidence 666655554432 1210 0000 00000000000 000011122333 7788888
Q ss_pred HHHHHc-CCCCCHh-hHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 038622 359 DQMIME-GLKPDKF-TYN----SLLTYYCRAGDIKRAADIVQNMTSNGCE-PDIVTYGTLIGGLCKAGRVEVASKLLRSI 431 (587)
Q Consensus 359 ~~~~~~-~~~~~~~-~~~----~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 431 (587)
+.++.. ...|+.. .+. ..+..+...|++++|+..|+.+.+.+.. |+. ....++.+|...|++++|..+|+++
T Consensus 220 ~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~ 298 (765)
T PRK10049 220 DALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTEL 298 (765)
T ss_pred HHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 888864 1223321 111 1133456779999999999999886432 322 2233678899999999999999998
Q ss_pred HHcCCCC---ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-----------CCCH---HHHHHHHHHHHhCCCCHHH
Q 038622 432 QMKGIVL---TPQAYNPVIQALFRRKRTTEAMRLFREMMEKAD-----------PPDA---LTYKHVFRGLCNGGGPIGE 494 (587)
Q Consensus 432 ~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~~---~~~~~l~~~~~~~~~~~~~ 494 (587)
....+.. .......++.++...|++++|...++++..... .|+. ..+...+..+...|+ +++
T Consensus 299 l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~-~~e 377 (765)
T PRK10049 299 FYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSND-LPQ 377 (765)
T ss_pred hhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCC-HHH
Confidence 8753321 134566777788999999999999999987521 1231 234566777888899 999
Q ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC-CchhhhhhhHHHHHHHHHHHHhcchhhh
Q 038622 495 AVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS-DRETSMVRGFLKIRKFQDALATFGDILD 572 (587)
Q Consensus 495 A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 572 (587)
|++.+++++.. .| ++..+..++.++...|++++|++.++++++..|++ ......+..+...|++++|.+.++++++
T Consensus 378 A~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 378 AEMRARELAYN--APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999984 46 78999999999999999999999999999999987 4577788889999999999999999999
Q ss_pred ccCchhhh
Q 038622 573 SRMPRKTF 580 (587)
Q Consensus 573 ~~~~~~~~ 580 (587)
..|....+
T Consensus 456 ~~Pd~~~~ 463 (765)
T PRK10049 456 REPQDPGV 463 (765)
T ss_pred hCCCCHHH
Confidence 88766554
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.93 E-value=7.3e-20 Score=182.81 Aligned_cols=463 Identities=13% Similarity=0.071 Sum_probs=256.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 038622 55 ERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNG 134 (587)
Q Consensus 55 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 134 (587)
+.+....+...++.|+++.|+..|+++++.+ |.+......++..+...|+.++|+.++++.... .+........++..
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~-P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~l 111 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAG-PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARA 111 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-ccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHH
Confidence 3344444444455555555555555555543 222111114555555555555555555555511 01112222222445
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHH
Q 038622 135 LCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEA 214 (587)
Q Consensus 135 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 214 (587)
+...|++++|+++|+++.+..+ .++..+..++..+...++.++|++.++++.... |+...+..++..+...++..+|
T Consensus 112 y~~~gdyd~Aiely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~A 188 (822)
T PRK14574 112 YRNEKRWDQALALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDA 188 (822)
T ss_pred HHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHH
Confidence 5555555555555555555421 124444444555555555555555555555442 2222222222333233444345
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHC
Q 038622 215 TELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESS 294 (587)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 294 (587)
++.++++.+.. +.+...+..+..+..+.|-...|.++..+-... +.+....+ + +.+.+.+..+....
T Consensus 189 L~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~--l--------~~~~~a~~vr~a~~- 255 (822)
T PRK14574 189 LQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQ--L--------ERDAAAEQVRMAVL- 255 (822)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHH--H--------HHHHHHHHHhhccc-
Confidence 55555555542 224444445555555555555555444321111 00000000 0 01111111111100
Q ss_pred CCCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHHcC--CCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 038622 295 GCARNVVTYNTLIDGFCKLKR---IEEAEEIFDEMEIQG--ISRNSV----TYNTLIDGLCKSRRVEDAAQLMDQMIMEG 365 (587)
Q Consensus 295 ~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~--~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 365 (587)
++. ....+ .+.|+.-++.+...- .|+... ...-.+.++...+++.++++.|+.+...+
T Consensus 256 --~~~-----------~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~ 322 (822)
T PRK14574 256 --PTR-----------SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEG 322 (822)
T ss_pred --ccc-----------cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcC
Confidence 000 00111 334444455544321 122211 22234456677788888888888888766
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCC----
Q 038622 366 LKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGC-----EPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGI---- 436 (587)
Q Consensus 366 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---- 436 (587)
.+....+...++.+|...+++++|..+++.+..... .++......|..+|...+++++|..+++++.+..+
T Consensus 323 ~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~ 402 (822)
T PRK14574 323 YKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVG 402 (822)
T ss_pred CCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEe
Confidence 443445667778888888888888888888766421 11222246677788888888888888888876322
Q ss_pred -------CCCh---HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 038622 437 -------VLTP---QAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERG 506 (587)
Q Consensus 437 -------~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 506 (587)
.|++ .....++..+...|+..+|.+.++++.... |-|......++..+...|. ..+|+..++.+..
T Consensus 403 ~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~-p~~A~~~~k~a~~-- 478 (822)
T PRK14574 403 VYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDL-PRKAEQELKAVES-- 478 (822)
T ss_pred ccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHhh--
Confidence 1232 234456777888899999999999998864 7778888888888888888 9999999977766
Q ss_pred CCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCchhhhhh
Q 038622 507 FLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDRETSMVR 552 (587)
Q Consensus 507 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 552 (587)
+.| +..+...++.++...|++++|..+.+++.+..|++.....+-+
T Consensus 479 l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~~l~r 525 (822)
T PRK14574 479 LAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQELDR 525 (822)
T ss_pred hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHHHHHH
Confidence 467 6778888999999999999999999999999998755443333
No 25
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=1.4e-19 Score=158.87 Aligned_cols=483 Identities=9% Similarity=0.054 Sum_probs=370.3
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 038622 5 ETAHADMVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEH 84 (587)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 84 (587)
+.-|++-++.+ ..+...|....+--..++++..|..+|++++..+ ..+...|...+..-.++.+...|..++++++..
T Consensus 59 RkefEd~irrn-R~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~ 136 (677)
T KOG1915|consen 59 RKEFEDQIRRN-RLNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI 136 (677)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh
Confidence 34566666665 6678888888888888999999999999999877 678889999999999999999999999999987
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHH
Q 038622 85 GCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYN 164 (587)
Q Consensus 85 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 164 (587)
.|.-...|...+..--..|++..|.++|++.... .|+..+|...+..-.+.+.++.|..+|+...-. .|++..|.
T Consensus 137 -lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wi 211 (677)
T KOG1915|consen 137 -LPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWI 211 (677)
T ss_pred -cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHH
Confidence 3556667877887778889999999999999986 899999999999999999999999999999874 78999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC-C-CCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC--HhhHHHHHHHH
Q 038622 165 SLISGLCKLGEVEEAVEILNQMILR-D-CSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPD--VCTFNSLIQGL 240 (587)
Q Consensus 165 ~l~~~~~~~g~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~ 240 (587)
..+..-.+.|+...+..+|+.++.. + -..+...+.+.+..-.++..++.|.-+|+-.++. ++.+ ...|......-
T Consensus 212 kyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fE 290 (677)
T KOG1915|consen 212 KYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFE 290 (677)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHH
Confidence 9999999999999999999998765 1 1123335566666666788899999999888876 2323 33444444333
Q ss_pred HhcCChHHHHH--------HHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHH--HHHHHH---
Q 038622 241 CLTSNFDVAME--------LFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVV--TYNTLI--- 307 (587)
Q Consensus 241 ~~~~~~~~a~~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~--- 307 (587)
-+-|+.....+ -|+.+++.+ +-|-.+|...++.-...|+.+...++|++++..- ||-.. .|...+
T Consensus 291 KqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLW 368 (677)
T KOG1915|consen 291 KQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLW 368 (677)
T ss_pred HHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHH
Confidence 34455433322 245555554 6788899999999999999999999999998753 44221 121111
Q ss_pred -----HHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHH----HHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 038622 308 -----DGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTL----IDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLT 378 (587)
Q Consensus 308 -----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 378 (587)
-.-....+.+.+.++|+..++. +|....+|..+ ...-.++.+...|.+++..++. .-|...++...+.
T Consensus 369 inYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIe 445 (677)
T KOG1915|consen 369 INYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIE 445 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHH
Confidence 1123467899999999998874 45555555443 3344577899999999998885 5688889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCChHhHHHHHHHHHhcCCHH
Q 038622 379 YYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGI-VLTPQAYNPVIQALFRRKRTT 457 (587)
Q Consensus 379 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~ 457 (587)
.-.+.++++.+..+|++.++.++. +..+|...+..-...|+.+.|..+|+-++.... ......|...+..-...|.++
T Consensus 446 lElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~e 524 (677)
T KOG1915|consen 446 LELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFE 524 (677)
T ss_pred HHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHH
Confidence 999999999999999999997655 777888888888889999999999999887521 112356777777778899999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHH-----hCC-----------CCHHHHHHHHHHHHH
Q 038622 458 EAMRLFREMMEKADPPDALTYKHVFRGLC-----NGG-----------GPIGEAVDFVIEMLE 504 (587)
Q Consensus 458 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~-----------~~~~~A~~~~~~~~~ 504 (587)
.|..+|++.++. .+...+|...+..-. +.+ + ...|..+|+++..
T Consensus 525 kaR~LYerlL~r--t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~-~~~AR~iferAn~ 584 (677)
T KOG1915|consen 525 KARALYERLLDR--TQHVKVWISFAKFEASASEGQEDEDLAELEITDEN-IKRARKIFERANT 584 (677)
T ss_pred HHHHHHHHHHHh--cccchHHHhHHHHhccccccccccchhhhhcchhH-HHHHHHHHHHHHH
Confidence 999999999986 444456655554322 222 2 5678888888774
No 26
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.92 E-value=1.4e-18 Score=158.63 Aligned_cols=517 Identities=11% Similarity=0.036 Sum_probs=417.2
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 038622 6 TAHADMVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHG 85 (587)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 85 (587)
+++...++. +|.++..|.. .+...+.+.|+.++.++.+. ++.+...|..+ .+..-|+.|..++.++.+.
T Consensus 367 RVlRKALe~-iP~sv~LWKa----AVelE~~~darilL~rAvec-cp~s~dLwlAl----arLetYenAkkvLNkaRe~- 435 (913)
T KOG0495|consen 367 RVLRKALEH-IPRSVRLWKA----AVELEEPEDARILLERAVEC-CPQSMDLWLAL----ARLETYENAKKVLNKAREI- 435 (913)
T ss_pred HHHHHHHHh-CCchHHHHHH----HHhccChHHHHHHHHHHHHh-ccchHHHHHHH----HHHHHHHHHHHHHHHHHhh-
Confidence 344444444 3666666644 34445566688888887765 24455555544 4556789999999999886
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--
Q 038622 86 CLVTNVTVNVLVHGFCKEGRIEDALSFIQEMV----SEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPD-- 159 (587)
Q Consensus 86 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-- 159 (587)
+|.+..+|..-...--.+|+.+...+++.+.+ ..|+..+...|..=+..+-..|..-.+..+....+..|+...
T Consensus 436 iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~ 515 (913)
T KOG0495|consen 436 IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDR 515 (913)
T ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchh
Confidence 68888999888888888999999888887654 357777888888888888899999999999999888776533
Q ss_pred cccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 038622 160 VFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQG 239 (587)
Q Consensus 160 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 239 (587)
..+|..-...|.+.+.++-|+.+|..++... +.+...|...+..--..|..++...+++++... .+.....|......
T Consensus 516 ~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake 593 (913)
T KOG0495|consen 516 KSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKE 593 (913)
T ss_pred HhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHH
Confidence 4578888899999999999999999998774 557778888888888889999999999999886 34456667777778
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 038622 240 LCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEA 319 (587)
Q Consensus 240 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 319 (587)
+...|+...|..++..+.+.. +.+...|...+........++.|..+|.+.... .++..+|..-+......++.++|
T Consensus 594 ~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA 670 (913)
T KOG0495|consen 594 KWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEA 670 (913)
T ss_pred HHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHH
Confidence 888999999999999998875 456888999999999999999999999999875 47888888888888888999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038622 320 EEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSN 399 (587)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 399 (587)
++++++.++.- |.-...|..+++.+.+.++.+.|...|..-.+. .+.....|..+...--+.|++-+|..++++..-.
T Consensus 671 ~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlk 748 (913)
T KOG0495|consen 671 LRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLK 748 (913)
T ss_pred HHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhc
Confidence 99999988763 555678888899999999999999999887764 4445667888888888889999999999999887
Q ss_pred CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 038622 400 GCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYK 479 (587)
Q Consensus 400 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 479 (587)
++. +...|...+++-.+.|+.+.|..++.++++. .+.+...|..-+....+.++-..+...+++. ..|++.+.
T Consensus 749 NPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVll 821 (913)
T KOG0495|consen 749 NPK-NALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLL 821 (913)
T ss_pred CCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHH
Confidence 665 7888999999999999999999999998886 3335677887777777777755555444432 55777787
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC-Cchhhh
Q 038622 480 HVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS-DRETSM 550 (587)
Q Consensus 480 ~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~ 550 (587)
.++..+....+ ++.|.+.|.++++. .| ..++|..+...+.+.|.-++-.+++++.....|.. +.|...
T Consensus 822 aia~lfw~e~k-~~kar~Wf~Ravk~--d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~av 891 (913)
T KOG0495|consen 822 AIAKLFWSEKK-IEKAREWFERAVKK--DPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAV 891 (913)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHcc--CCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHH
Confidence 88888888888 99999999999984 56 57889999999999999999999999999998876 344433
No 27
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.92 E-value=1.5e-19 Score=171.44 Aligned_cols=567 Identities=13% Similarity=0.080 Sum_probs=340.0
Q ss_pred hHHHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 038622 2 KLVETAHADMVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQM 81 (587)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 81 (587)
++|..++.+.++.. |.+...|..|...|-..|+.+++...+-.+...+ |.|...|..+.....++|+++.|.-+|.++
T Consensus 156 eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy~rA 233 (895)
T KOG2076|consen 156 EEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCYSRA 233 (895)
T ss_pred HHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 56777777777776 6677777777777777887777777666665554 666777777777777777788888888887
Q ss_pred HHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh----hHHHHHHHHHhcCChHHHHHHHHHHHhCC-C
Q 038622 82 VEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQF----TYNTLVNGLCKVGHVKQALEVMDMMLQEG-F 156 (587)
Q Consensus 82 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~ 156 (587)
++.+ |++......-+..|-+.|+...|...|.++.....+.|.. .-...++.+...++.+.|.+.++.....+ -
T Consensus 234 I~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~ 312 (895)
T KOG2076|consen 234 IQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKD 312 (895)
T ss_pred HhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccc
Confidence 7775 4444444455667777788777777777777763211211 12234455566666677777777766521 1
Q ss_pred CCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------------------------CCCChhhHHHHHHHHhccC
Q 038622 157 DPDVFTYNSLISGLCKLGEVEEAVEILNQMILRD---------------------------CSPNTITYNTLISTLCKEN 209 (587)
Q Consensus 157 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---------------------------~~~~~~~~~~l~~~~~~~~ 209 (587)
..+...++.++..+.+...++.+........... .+++..+ ..+.-++.+.+
T Consensus 313 ~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~ 391 (895)
T KOG2076|consen 313 EASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVHLK 391 (895)
T ss_pred cccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhhccc
Confidence 2244566677777777777777777766665411 1111111 12333444444
Q ss_pred CHHHHHHHHHHHHhCC--CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHH
Q 038622 210 QVEEATELARVLTSKG--ILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKL 287 (587)
Q Consensus 210 ~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 287 (587)
..+....+...+.... +..+...+..+..++...|.+..|+.+|..+......-+...|..++++|...|.++.|++.
T Consensus 392 ~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~ 471 (895)
T KOG2076|consen 392 ERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEF 471 (895)
T ss_pred ccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHH
Confidence 4444444444455544 23345667778888888899999999998888775445567888888999889999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038622 288 LKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQ--------GISRNSVTYNTLIDGLCKSRRVEDAAQLMD 359 (587)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 359 (587)
|+.++... |.+..+...|...+.+.|+.++|.+++..+..- ..+|+..........+.+.|+.++=+....
T Consensus 472 y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~ 550 (895)
T KOG2076|consen 472 YEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTAS 550 (895)
T ss_pred HHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 99888775 566677778888888889999888888875421 123333333344445555565554333322
Q ss_pred HHHHcC-----C---------------------------------------------CC-------------CH--hhHH
Q 038622 360 QMIMEG-----L---------------------------------------------KP-------------DK--FTYN 374 (587)
Q Consensus 360 ~~~~~~-----~---------------------------------------------~~-------------~~--~~~~ 374 (587)
.++... + .+ +. ..+.
T Consensus 551 ~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~ 630 (895)
T KOG2076|consen 551 TLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFR 630 (895)
T ss_pred HHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHH
Confidence 222100 0 00 00 0123
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCcc----hHHHHHHHHHhcCChHHHHHHHHHHHHc-CC--CCC-hHhHHH
Q 038622 375 SLLTYYCRAGDIKRAADIVQNMTSNGCE-PDIV----TYGTLIGGLCKAGRVEVASKLLRSIQMK-GI--VLT-PQAYNP 445 (587)
Q Consensus 375 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~--~~~-~~~~~~ 445 (587)
.++.+..+.+.+++|..+...+...... -+.. .-...+.+....+++..|...++.+... +. .|. ...|+.
T Consensus 631 e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~ 710 (895)
T KOG2076|consen 631 ELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNL 710 (895)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 3445566667777777777666654211 1111 1122334445667777777777777654 11 111 234444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHc-
Q 038622 446 VIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPE-FSSFYMLAEGLVS- 523 (587)
Q Consensus 446 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~- 523 (587)
........++-.--.+++..+.......++......+..+...+. +.-|...|-++... .|+ |-.-..+|-++..
T Consensus 711 ~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s-~~~Al~~y~ra~~~--~pd~Pl~nl~lglafih~ 787 (895)
T KOG2076|consen 711 DFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNAS-FKHALQEYMRAFRQ--NPDSPLINLCLGLAFIHL 787 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccc-hHHHHHHHHHHHHh--CCCCcHHHHHHHHHHHHH
Confidence 444444444433333334333332111112222233344455666 88888888888774 453 4444444444332
Q ss_pred -c--------CCHhHHHHHHHHHHhcCCC---CCchhhhhhhHHHHHHHHHHHHhcchhhhccCc
Q 038622 524 -L--------GKEETLVELIDMVMDKAKF---SDRETSMVRGFLKIRKFQDALATFGDILDSRMP 576 (587)
Q Consensus 524 -~--------g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 576 (587)
+ -..-.+...+++..+.... .++.+.++++|-+.|-..=|+.+|+++++..|+
T Consensus 788 a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~ 852 (895)
T KOG2076|consen 788 ALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPK 852 (895)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCcc
Confidence 1 1233455566655554433 356788889999999999999999999887643
No 28
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.92 E-value=2.1e-19 Score=179.59 Aligned_cols=466 Identities=13% Similarity=0.087 Sum_probs=311.7
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 038622 22 TFNILIKALCKAHQIRPAILMMEEMPGYGLAPDE-RTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGF 100 (587)
Q Consensus 22 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 100 (587)
+...-+-...+.|++..|+..|+++.+.. |.++ .++ .++..+...|+.++|+..++++.... +.+......++..+
T Consensus 36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~~-P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly 112 (822)
T PRK14574 36 TQYDSLIIRARAGDTAPVLDYLQEESKAG-PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAY 112 (822)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhC-ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHH
Confidence 33344455688999999999999999875 3342 344 88888889999999999999998321 33344444557789
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHH
Q 038622 101 CKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAV 180 (587)
Q Consensus 101 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 180 (587)
...|++++|+++|+++++.. |.+...+..++..+...++.++|++.++++... .|+...+..++..+...++..+|+
T Consensus 113 ~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL 189 (822)
T PRK14574 113 RNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDAL 189 (822)
T ss_pred HHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHH
Confidence 99999999999999999984 556677888889999999999999999999886 455445544444454567776799
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038622 181 EILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKG 260 (587)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 260 (587)
+.++++...+ |.+...+..+..++.+.|-...|.++..+-... +. ......+ +.+.+.+..+...
T Consensus 190 ~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~--~~~~~~l--------~~~~~a~~vr~a~--- 254 (822)
T PRK14574 190 QASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VS--AEHYRQL--------ERDAAAEQVRMAV--- 254 (822)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cC--HHHHHHH--------HHHHHHHHHhhcc---
Confidence 9999999986 667888899999999999999999877653321 11 1111111 1112222221111
Q ss_pred CCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHC--CCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC
Q 038622 261 CQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESS--GCARNV----VTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRN 334 (587)
Q Consensus 261 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 334 (587)
.++..- -. +-.-.+.|+.-++.+... ..|+.. .+....+-++...|++.++++.|+.+...+.+..
T Consensus 255 -~~~~~~----~~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P 326 (822)
T PRK14574 255 -LPTRSE----TE---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMP 326 (822)
T ss_pred -cccccc----hh---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCC
Confidence 111000 00 000123444444444431 112111 1222344456667777777777777776654444
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--------
Q 038622 335 SVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGL-----KPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGC-------- 401 (587)
Q Consensus 335 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-------- 401 (587)
..+-..++.+|...+++++|..+|+.+..... .++......|.-++...+++++|..+++.+.+..+
T Consensus 327 ~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~ 406 (822)
T PRK14574 327 DYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGL 406 (822)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCC
Confidence 55666677777777777777777777765321 12233345667777777777777777777776311
Q ss_pred ---CCCc---chHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH
Q 038622 402 ---EPDI---VTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDA 475 (587)
Q Consensus 402 ---~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 475 (587)
.|+. .....++..+...|+..+|.+.++++....+. |...+..++..+...|.+.+|...++.+...+ |.+.
T Consensus 407 ~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~ 484 (822)
T PRK14574 407 PGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSL 484 (822)
T ss_pred CCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccH
Confidence 1221 13344567778889999999999999886554 77888899999999999999999998777753 5556
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038622 476 LTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGL 521 (587)
Q Consensus 476 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 521 (587)
......+.+....++ +++|......+++ ..|+......|.+..
T Consensus 485 ~~~~~~~~~al~l~e-~~~A~~~~~~l~~--~~Pe~~~~~~l~r~~ 527 (822)
T PRK14574 485 ILERAQAETAMALQE-WHQMELLTDDVIS--RSPEDIPSQELDRQR 527 (822)
T ss_pred HHHHHHHHHHHhhhh-HHHHHHHHHHHHh--hCCCchhHHHHHHHH
Confidence 666677777788888 9999999999887 357544444454433
No 29
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.92 E-value=6.3e-19 Score=167.22 Aligned_cols=557 Identities=16% Similarity=0.128 Sum_probs=391.0
Q ss_pred CCCHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHH
Q 038622 17 KPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVL 96 (587)
Q Consensus 17 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 96 (587)
+|.....-...+.+...|++++|..++.++++.. |.++..|..++..|-..|+.+++...+-.+...+ |.+...|..+
T Consensus 136 ~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~l 213 (895)
T KOG2076|consen 136 APELRQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRL 213 (895)
T ss_pred CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHH
Confidence 3334444455566777899999999999999987 8899999999999999999999999998888776 6677999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc----ccHHHHHHHHHh
Q 038622 97 VHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDV----FTYNSLISGLCK 172 (587)
Q Consensus 97 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~ 172 (587)
.....+.|.++.|.-.|.++++.. |++......-+..|-+.|+...|.+.|.++.+..++.|. .....++..+..
T Consensus 214 adls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~ 292 (895)
T KOG2076|consen 214 ADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFIT 292 (895)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999985 666667777788999999999999999999987432222 233445666777
Q ss_pred cCCHHHHHHHHHHHHhCC-CCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCC------------------------
Q 038622 173 LGEVEEAVEILNQMILRD-CSPNTITYNTLISTLCKENQVEEATELARVLTSKGIL------------------------ 227 (587)
Q Consensus 173 ~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------------------------ 227 (587)
.++-+.|.+.++...... -..+...++.++..+.+..+++.+.............
T Consensus 293 ~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~ 372 (895)
T KOG2076|consen 293 HNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGK 372 (895)
T ss_pred hhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCC
Confidence 888899999999888731 1335556788899999999999998877766552111
Q ss_pred ---CCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHH
Q 038622 228 ---PDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKG--CQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVT 302 (587)
Q Consensus 228 ---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 302 (587)
++..+ ..+.-++......+....+........ +..+...+..++.++...|++.+|+.+|..+.....-.+...
T Consensus 373 ~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~v 451 (895)
T KOG2076|consen 373 ELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFV 451 (895)
T ss_pred CCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhh
Confidence 12222 123334444554444444555555554 333467899999999999999999999999998765566779
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--------cCCCCCHhhHH
Q 038622 303 YNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIM--------EGLKPDKFTYN 374 (587)
Q Consensus 303 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~~~ 374 (587)
|..++.+|...|.++.|.+.|..++... |.+...-..+...+.+.|+.++|.+.+..+.. .+..|+.....
T Consensus 452 w~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~ 530 (895)
T KOG2076|consen 452 WYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILA 530 (895)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHH
Confidence 9999999999999999999999998875 66777788889999999999999999998652 22344555555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC-----CCC-----------------CcchHHHHHHHHHhcCChHHHHHHHHH--
Q 038622 375 SLLTYYCRAGDIKRAADIVQNMTSNG-----CEP-----------------DIVTYGTLIGGLCKAGRVEVASKLLRS-- 430 (587)
Q Consensus 375 ~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~-----------------~~~~~~~l~~~~~~~~~~~~a~~~~~~-- 430 (587)
.....+...|+.++=+.+...++... +-| .......+..+-.+.++.....+-+..
T Consensus 531 ~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~ 610 (895)
T KOG2076|consen 531 HRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGT 610 (895)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchh
Confidence 66677788888877555544443211 111 111222333333333332222211111
Q ss_pred ----HHHcCCCCCh--HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCHH---HHHH-HHHHHHhCCCCHHHHHHHH
Q 038622 431 ----IQMKGIVLTP--QAYNPVIQALFRRKRTTEAMRLFREMMEKAD-PPDAL---TYKH-VFRGLCNGGGPIGEAVDFV 499 (587)
Q Consensus 431 ----~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~---~~~~-l~~~~~~~~~~~~~A~~~~ 499 (587)
....+...+. ..+..++.++.+.+++++|..+...+..... ..+.. .+.. .+.+....++ +..|..++
T Consensus 611 ~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d-~~~a~~~l 689 (895)
T KOG2076|consen 611 EFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARD-PGDAFSYL 689 (895)
T ss_pred hhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCC-HHHHHHHH
Confidence 1111222111 2345667788899999999999998887532 12222 2333 3344556666 99999999
Q ss_pred HHHHHc-C--CCCC-HHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCc--hhhhhhhHHHHHHHHHHHHhcchhhhc
Q 038622 500 IEMLER-G--FLPE-FSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDR--ETSMVRGFLKIRKFQDALATFGDILDS 573 (587)
Q Consensus 500 ~~~~~~-~--~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~A~~~~~~~~~~ 573 (587)
+.++.. + ..|. ...|....+...+.|+-.--.+.+..+...++++.. ....+..++..+.+..|+..|-++...
T Consensus 690 R~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~ 769 (895)
T KOG2076|consen 690 RSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQ 769 (895)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHh
Confidence 999853 1 1232 223333555566677766667777777777776633 333444566788899999999988888
Q ss_pred cCchhh
Q 038622 574 RMPRKT 579 (587)
Q Consensus 574 ~~~~~~ 579 (587)
.|..+-
T Consensus 770 ~pd~Pl 775 (895)
T KOG2076|consen 770 NPDSPL 775 (895)
T ss_pred CCCCcH
Confidence 876443
No 30
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=1.3e-21 Score=186.96 Aligned_cols=303 Identities=15% Similarity=0.108 Sum_probs=187.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHhc
Q 038622 62 MQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPD---QFTYNTLVNGLCKV 138 (587)
Q Consensus 62 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 138 (587)
+..+...|++++|...|+++.+.+ |.+..++..++..+...|++++|..+++.+...+..++ ...+..++..|...
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 444556666666666666666654 34455566666666666666666666666665321111 13455666666666
Q ss_pred CChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHhccCCHHHH
Q 038622 139 GHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPN----TITYNTLISTLCKENQVEEA 214 (587)
Q Consensus 139 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a 214 (587)
|++++|..+|+++.+.. +++..++..++..+...|++++|++.++.+...+..+. ...+..++..+...|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 66777766666666542 23455566666666666777777776666665432211 11344566666677777777
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHC
Q 038622 215 TELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESS 294 (587)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 294 (587)
...++++.+.. +.+...+..++..+...|++++|.++++++...+......++..++.++...|++++|...++++.+.
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77777766543 22445566666777777777777777777766531112345666777777777777777777777665
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHh
Q 038622 295 GCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCK---SRRVEDAAQLMDQMIMEGLKPDKF 371 (587)
Q Consensus 295 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~ 371 (587)
. |+...+..++..+.+.|++++|..+++++... .|+...+..++..+.. .|+.+++..+++++.+.++.|++.
T Consensus 279 ~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 279 Y--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred C--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 3 44445566777777777788887777777665 3555566655655543 446777777777777655555544
No 31
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=2.4e-21 Score=185.07 Aligned_cols=194 Identities=14% Similarity=0.114 Sum_probs=86.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC---HhhHHHHHHHHHhc
Q 038622 167 ISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPD---VCTFNSLIQGLCLT 243 (587)
Q Consensus 167 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 243 (587)
+..+...|++++|+..|.++...+ +.+..++..++..+...|++++|..+++.+...+..++ ...+..++..+...
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 334445555555555555555543 23444455555555555555555555555544321111 12334444555555
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCCHHHH
Q 038622 244 SNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARN----VVTYNTLIDGFCKLKRIEEA 319 (587)
Q Consensus 244 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a 319 (587)
|++++|..+|+++.+.. +.+..++..++..+...|++++|++.++.+.+.+..+. ...+..++..+...|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 55555555555554432 23344445555555555555555555555544321110 01122333334444444444
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038622 320 EEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIM 363 (587)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 363 (587)
...++++.+.. +.+...+..++..+.+.|++++|...++++..
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 242 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEE 242 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44444444332 22233333344444444444444444444443
No 32
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.90 E-value=8.9e-18 Score=147.70 Aligned_cols=484 Identities=12% Similarity=0.048 Sum_probs=372.6
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 038622 41 LMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEG 120 (587)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 120 (587)
+-|+.-++.+ ..+...|...+.--..++++..|..+|++++..+ ..+...|...+.+-.+...+..|..++++++..
T Consensus 60 kefEd~irrn-R~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~- 136 (677)
T KOG1915|consen 60 KEFEDQIRRN-RLNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI- 136 (677)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh-
Confidence 4555555554 5677788888888889999999999999999886 567788999999999999999999999999986
Q ss_pred CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 038622 121 FNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNT 200 (587)
Q Consensus 121 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 200 (587)
+|.-...|...+..--..|++..|.++|+.-..- .|+..+|.+.+..-.+.+.++.|..+|+..+-. .|+...|..
T Consensus 137 lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wik 212 (677)
T KOG1915|consen 137 LPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIK 212 (677)
T ss_pred cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHH
Confidence 3555567888888888899999999999999885 899999999999999999999999999999876 589999999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhC-CC-CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--HHhHHHHHHHHH
Q 038622 201 LISTLCKENQVEEATELARVLTSK-GI-LPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPD--EFTYNMLIDSLC 276 (587)
Q Consensus 201 l~~~~~~~~~~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~ 276 (587)
.+..-.+.|+...+..+|+...+. |. ..+...+.+....-..+..++.|.-+|+-.+..- |.+ ...|..+...--
T Consensus 213 yarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEK 291 (677)
T KOG1915|consen 213 YARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEK 291 (677)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHH
Confidence 999999999999999999988764 11 1122334444444456778899999999888762 333 344555554444
Q ss_pred ccCChHHHHHH--------HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHH--
Q 038622 277 SRGMLEEALKL--------LKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSV--TYNTLIDG-- 344 (587)
Q Consensus 277 ~~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~-- 344 (587)
+-|+.....+. |+...+.+ |.+-.+|...+..-...|+.+...++|+++...- ||-.. .|...+..
T Consensus 292 qfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWi 369 (677)
T KOG1915|consen 292 QFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWI 369 (677)
T ss_pred HhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHH
Confidence 55655433322 44455544 6788889999999999999999999999998653 55321 22222211
Q ss_pred ------HHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHH----HHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHH
Q 038622 345 ------LCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSL----LTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGG 414 (587)
Q Consensus 345 ------~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 414 (587)
-....+.+.+.++|+.+++. ++....|+..+ +....++.+...|.+++..++. ..|...++...+..
T Consensus 370 nYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIel 446 (677)
T KOG1915|consen 370 NYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIEL 446 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHH
Confidence 13568999999999999984 44344454443 4445688899999999998874 67888899999999
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhCCCCHH
Q 038622 415 LCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKAD-PPDALTYKHVFRGLCNGGGPIG 493 (587)
Q Consensus 415 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 493 (587)
-.+.++++...+++++.++.++. +..+|...+..-...|+.+.|..+|+-+++... .-....|...+..-...|. ++
T Consensus 447 ElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E-~e 524 (677)
T KOG1915|consen 447 ELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGE-FE 524 (677)
T ss_pred HHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcch-HH
Confidence 99999999999999999997655 678999999999999999999999999998531 1223456677777778888 99
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHH-----ccC-----------CHhHHHHHHHHHHhcC
Q 038622 494 EAVDFVIEMLERGFLPEFSSFYMLAEGLV-----SLG-----------KEETLVELIDMVMDKA 541 (587)
Q Consensus 494 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~~~ 541 (587)
.|..+|+++++. .+...+|...+..-. +.| ....|+.+|+++...-
T Consensus 525 kaR~LYerlL~r--t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~ 586 (677)
T KOG1915|consen 525 KARALYERLLDR--TQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYL 586 (677)
T ss_pred HHHHHHHHHHHh--cccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHH
Confidence 999999999984 355556666655443 344 5678899998886543
No 33
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.89 E-value=7.3e-19 Score=153.73 Aligned_cols=279 Identities=11% Similarity=0.058 Sum_probs=161.6
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHH--ccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCH
Q 038622 239 GLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLC--SRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRI 316 (587)
Q Consensus 239 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 316 (587)
.+.+.|+++.|+++++-+.+.+-......-+.+...+. ...++..|.++-+.++..+ ..+..+...-+......|++
T Consensus 428 ~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 428 ELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcH
Confidence 35667777777777766655432222222233322222 2335556666655555443 33444444444445556777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 038622 317 EEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNM 396 (587)
Q Consensus 317 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 396 (587)
++|.+.|.+.+..+.. -......+.-.+...|+.++|+..|-++..- +..+..++..+...|--..+..+|++++.+.
T Consensus 507 dka~~~ykeal~ndas-c~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~ 584 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDAS-CTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQA 584 (840)
T ss_pred HHHHHHHHHHHcCchH-HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHh
Confidence 7777777776654311 2223333444455667777777777665442 2335566666667777777777777777666
Q ss_pred HHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH
Q 038622 397 TSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDAL 476 (587)
Q Consensus 397 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 476 (587)
... ++.++.++..|+..|-+.|+-..|..+.-.--.. ++-+.++...++..|....-+++|+.+|+++.- +.|+..
T Consensus 585 ~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~ 660 (840)
T KOG2003|consen 585 NSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQS 660 (840)
T ss_pred ccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHH
Confidence 553 3335666677777777777777776654333322 333455666666666666677777777777655 466766
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC
Q 038622 477 TYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLG 525 (587)
Q Consensus 477 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 525 (587)
-|..++..|.+...++..|.++|+...++ ++.+.+.+.-|.+++-..|
T Consensus 661 kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 661 KWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhcccc
Confidence 67666665554433377777777776653 3446666666666666655
No 34
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.88 E-value=1.3e-19 Score=158.35 Aligned_cols=475 Identities=15% Similarity=0.108 Sum_probs=340.4
Q ss_pred CCCHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHH-HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChh----
Q 038622 17 KPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERT-FTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNV---- 91 (587)
Q Consensus 17 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---- 91 (587)
..+-.+...|.+-|....-..+|...|+-+.+...-||.-. -..+...+.+..++.+|++.|+-++..-+..+..
T Consensus 198 dltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rik 277 (840)
T KOG2003|consen 198 DLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIK 277 (840)
T ss_pred cchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHH
Confidence 34445666777778888888999999999988766666543 4567788999999999999999888764333333
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcc--------cH
Q 038622 92 TVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVF--------TY 163 (587)
Q Consensus 92 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------~~ 163 (587)
+.+.+...+.+.|++++|+..|+...+. .|+..+-..++-++...|+.++..+.|.+++.....||.. ..
T Consensus 278 il~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~ 355 (840)
T KOG2003|consen 278 ILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPD 355 (840)
T ss_pred HHhhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcc
Confidence 3455555788999999999999999886 6777776667777778899999999999998743222211 12
Q ss_pred HHHHHHHHh---------cC--CHHHHHHHHHHHHhCCCCCCh---------------------hhHHHHHHHHhccCCH
Q 038622 164 NSLISGLCK---------LG--EVEEAVEILNQMILRDCSPNT---------------------ITYNTLISTLCKENQV 211 (587)
Q Consensus 164 ~~l~~~~~~---------~g--~~~~a~~~~~~~~~~~~~~~~---------------------~~~~~l~~~~~~~~~~ 211 (587)
..++.-..+ .+ +.++++-.--+++.--+.|+- ..-..-+..+.+.|++
T Consensus 356 ~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~ 435 (840)
T KOG2003|consen 356 DNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDI 435 (840)
T ss_pred hHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCH
Confidence 222222222 11 122222111112111111110 0111223457789999
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh--cCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHH
Q 038622 212 EEATELARVLTSKGILPDVCTFNSLIQGLCL--TSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLK 289 (587)
Q Consensus 212 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 289 (587)
+.|+++++.+.+..-......-+.+-..+.. -.++..|.++-+..+..+ +-++.....-+......|++++|.+.|+
T Consensus 436 ~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~yk 514 (840)
T KOG2003|consen 436 EGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYK 514 (840)
T ss_pred HHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHH
Confidence 9999999988776433222333333222333 347888888888777654 4566666666666677899999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 038622 290 EMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPD 369 (587)
Q Consensus 290 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 369 (587)
+++..+ ..-..++..++-.+-..|+.++|++.|-++...- ..+..+...+...|....+...|++++.++... ++.|
T Consensus 515 eal~nd-asc~ealfniglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~d 591 (840)
T KOG2003|consen 515 EALNND-ASCTEALFNIGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPND 591 (840)
T ss_pred HHHcCc-hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCC
Confidence 999865 2334455566777888999999999998764431 346778888999999999999999999998775 5668
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHH-
Q 038622 370 KFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQ- 448 (587)
Q Consensus 370 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~- 448 (587)
+..+..|...|-+.|+-.+|.+.+-.--+. ++-+.++...|+..|....-+++++.+|+++.- +.|+..-|..++.
T Consensus 592 p~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmias 668 (840)
T KOG2003|consen 592 PAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIAS 668 (840)
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHH
Confidence 889999999999999999999887665554 334788888999999999999999999999877 7889988887665
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 038622 449 ALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEML 503 (587)
Q Consensus 449 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~ 503 (587)
++.+.|++++|..+|+...++ +|.+...+..++..+...|- .++.++-.++.
T Consensus 669 c~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl--~d~key~~kle 720 (840)
T KOG2003|consen 669 CFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL--KDAKEYADKLE 720 (840)
T ss_pred HHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc--hhHHHHHHHHH
Confidence 556789999999999999887 68888999999988888874 56665555443
No 35
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=2.5e-16 Score=142.07 Aligned_cols=511 Identities=12% Similarity=0.054 Sum_probs=321.0
Q ss_pred CHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 038622 19 DVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVH 98 (587)
Q Consensus 19 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 98 (587)
+..-+..+++-+..+.++..|.-+-++....+ .||....-+++++.-.|++.+|..+...-.-. ..+.......+.
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~ 90 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAK 90 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHH
Confidence 34555555666666666666666666655443 44555555566666666666665555443221 234444555555
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHH
Q 038622 99 GFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEE 178 (587)
Q Consensus 99 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 178 (587)
++.+..++++|..++..... ..+...+..--. ...-..+.+. .. .++......+..-...|....+.++
T Consensus 91 ~l~~lk~~~~al~vl~~~~~---~~~~f~yy~~~~--~~~l~~n~~~----~~--~~~~~essic~lRgk~y~al~n~~~ 159 (611)
T KOG1173|consen 91 CLVKLKEWDQALLVLGRGHV---ETNPFSYYEKDA--ANTLELNSAG----ED--LMINLESSICYLRGKVYVALDNREE 159 (611)
T ss_pred HHHHHHHHHHHHHHhcccch---hhcchhhcchhh--hceeccCccc----cc--ccccchhceeeeeeehhhhhccHHH
Confidence 66666666666665553210 001100000000 0000000111 00 0011122222333445666677888
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 038622 179 AVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSK-GILPDVCTFNSLIQGLCLTSNFDVAMELFQEMK 257 (587)
Q Consensus 179 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 257 (587)
|...|.++...+.. +-+.+..++....-.. ++...+++.+--. ....+......+.........-+.....-.+..
T Consensus 160 ar~~Y~~Al~~D~~-c~Ea~~~lvs~~mlt~--~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~s 236 (611)
T KOG1173|consen 160 ARDKYKEALLADAK-CFEAFEKLVSAHMLTA--QEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDES 236 (611)
T ss_pred HHHHHHHHHhcchh-hHHHHHHHHHHHhcch--hHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhh
Confidence 88888887766422 3333333333322211 1112222110000 000111111112111100000001110011011
Q ss_pred HcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHH
Q 038622 258 TKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVT 337 (587)
Q Consensus 258 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 337 (587)
-.+...+.......+.-+...+++.+..++.+.+.+.. |+....+..-+.++...|+..+-..+-.++.+.. |..+.+
T Consensus 237 l~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~s 314 (611)
T KOG1173|consen 237 LIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALS 314 (611)
T ss_pred hhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcc
Confidence 11224466677777888888999999999999998876 6666666666668888888877777777777664 777889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHH
Q 038622 338 YNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPD-KFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLC 416 (587)
Q Consensus 338 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 416 (587)
|..++--|...|+..+|.+.|.++... .|. ...|..++..+...|..++|...|..+.+. ++-....+..++.-|.
T Consensus 315 W~aVg~YYl~i~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~ 391 (611)
T KOG1173|consen 315 WFAVGCYYLMIGKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYM 391 (611)
T ss_pred hhhHHHHHHHhcCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHH
Confidence 999999999999999999999999874 333 347889999999999999999999988875 2224455666777888
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCCCHHHHHHHHHHHHhCCC
Q 038622 417 KAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEK------ADPPDALTYKHVFRGLCNGGG 490 (587)
Q Consensus 417 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~ 490 (587)
+.++.+.|.++|.++....+. ++...+.++......+.+.+|..+|+..+.. ..+.-..+++.++.++.+.+.
T Consensus 392 ~t~n~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~ 470 (611)
T KOG1173|consen 392 RTNNLKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNK 470 (611)
T ss_pred HhccHHHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhh
Confidence 999999999999999886433 6778889999999999999999999999842 111234568889999999999
Q ss_pred CHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCchhhhhhhHHH
Q 038622 491 PIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDRETSMVRGFLK 556 (587)
Q Consensus 491 ~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 556 (587)
+++|+..+++++.. .| +..++..+|-+|...|+++.|++.|.+++-..|.+.....+....+.
T Consensus 471 -~~eAI~~~q~aL~l--~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 471 -YEEAIDYYQKALLL--SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIE 534 (611)
T ss_pred -HHHHHHHHHHHHHc--CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 99999999999984 45 89999999999999999999999999999999998766655544433
No 36
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1.8e-17 Score=146.37 Aligned_cols=218 Identities=15% Similarity=0.055 Sum_probs=118.7
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHH
Q 038622 347 KSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASK 426 (587)
Q Consensus 347 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 426 (587)
-.|+.-.|..-|+.++.....+ ...|-.+..+|....+.++-...|..+.+.++. ++.+|..-++++.-.+++++|..
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHH
Confidence 3455556666666666542221 112444555566666666666666666554433 45556666666666666666666
Q ss_pred HHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 038622 427 LLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERG 506 (587)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 506 (587)
-|++....++. +...+..+..+..+.++++++...|++..++ +|.-+..++..+..+..+++ ++.|.+.|..+++
T Consensus 416 DF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqq-Fd~A~k~YD~ai~-- 490 (606)
T KOG0547|consen 416 DFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQ-FDKAVKQYDKAIE-- 490 (606)
T ss_pred HHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHh-HHHHHHHHHHHHh--
Confidence 66666653322 3345555555556666666666666666655 35555556666666666666 6666666666665
Q ss_pred CCCC-------HHHHH--HHHHHHHccCCHhHHHHHHHHHHhcCCCCCc-hhhhhhhHHHHHHHHHHHHhcchhhh
Q 038622 507 FLPE-------FSSFY--MLAEGLVSLGKEETLVELIDMVMDKAKFSDR-ETSMVRGFLKIRKFQDALATFGDILD 572 (587)
Q Consensus 507 ~~p~-------~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~A~~~~~~~~~ 572 (587)
+.|+ +..+. .++..-+ .+++..|..+++++++.+|..+. ..+++...+++|+.++|+.+|++...
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 2332 11111 1111112 25666666666666666666543 45566666666666666666665543
No 37
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=5e-16 Score=136.56 Aligned_cols=368 Identities=10% Similarity=0.037 Sum_probs=244.1
Q ss_pred CCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhH--H
Q 038622 157 DPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTF--N 234 (587)
Q Consensus 157 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~ 234 (587)
..|...+...+..+...|..+.|+..|...+..- |..-.+|..|..... +. +....+... .+.+.... .
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~lit---~~----e~~~~l~~~-l~~~~h~M~~~ 231 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELIT---DI----EILSILVVG-LPSDMHWMKKF 231 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhhc---hH----HHHHHHHhc-CcccchHHHHH
Confidence 3354455555566667788888888888777653 444445555444332 11 122222211 12121111 2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHH
Q 038622 235 SLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARN---VVTYNTLIDGFC 311 (587)
Q Consensus 235 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~ 311 (587)
.+..++....+.+++..-.+.....|++.+...-...+.+.....++++|+..|+++.+.+ |-. ..+|..++- .
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knD-PYRl~dmdlySN~LY--v 308 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKND-PYRLDDMDLYSNVLY--V 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcchhHHHHhHHHH--H
Confidence 2344555556777888777777777777666666667777778888888888888888764 333 333433332 2
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 038622 312 KLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAAD 391 (587)
Q Consensus 312 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 391 (587)
+. +-. .+..+.+-...-..-.+.+...++.-|.-.++.++|...|+++++.+. .....|+.++.-|....+...|++
T Consensus 309 ~~-~~s-kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~ 385 (559)
T KOG1155|consen 309 KN-DKS-KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIE 385 (559)
T ss_pred Hh-hhH-HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHHH
Confidence 22 211 122222111111123445666677777777888888888888888532 245578888888888888888888
Q ss_pred HHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 038622 392 IVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKAD 471 (587)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 471 (587)
-|+.+++.++. |...|..|+++|.-.+-+.-|+-+|+++....+. |+..|..++.+|.+.++.++|++.|.++...|
T Consensus 386 sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~- 462 (559)
T KOG1155|consen 386 SYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLG- 462 (559)
T ss_pred HHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-
Confidence 88888886544 7778888888888888888888888888885333 56888888888888888888888888888865
Q ss_pred CCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----CCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCC
Q 038622 472 PPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERG-----FLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKF 543 (587)
Q Consensus 472 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~-----~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 543 (587)
..+...+..++..+-+.++ ..+|..+|++.++.. +.| ...+...|+.-+.+.+++++|..+...+..-++.
T Consensus 463 dte~~~l~~LakLye~l~d-~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e 539 (559)
T KOG1155|consen 463 DTEGSALVRLAKLYEELKD-LNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGETE 539 (559)
T ss_pred ccchHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCch
Confidence 4466778888888888888 888888888877521 233 3455566778888888888888888887776444
No 38
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=3.7e-17 Score=144.46 Aligned_cols=425 Identities=13% Similarity=0.036 Sum_probs=241.3
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHhhccCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 038622 22 TFNILIKALCKAHQIRPAILMMEEMPGYGLAPD-ERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGF 100 (587)
Q Consensus 22 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 100 (587)
.+....+-|.+.|++++|++.|..++.. .|+ +.-|.....+|...|+++.+.+-..++++.+ |....++..-..++
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~-P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN-PDYVKALLRRASAH 193 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-cHHHHHHHHHHHHH
Confidence 4455667788888888888888888876 566 6677778888888888888888888888775 44555666667777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHh-CC--CCCCcccHHHHHHHHHhcCCHH
Q 038622 101 CKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQ-EG--FDPDVFTYNSLISGLCKLGEVE 177 (587)
Q Consensus 101 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~--~~~~~~~~~~l~~~~~~~g~~~ 177 (587)
-..|++++|+.=..-..-.+.-.+..+-..+=+.+-+ .|..-..+-.. .+ +-|+..........+... ..
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk-----~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~--~~ 266 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKK-----QAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD--PK 266 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHH-----HHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc--cc
Confidence 7778877776433322211111111111111111111 22222222222 11 122222222222221110 00
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHhc-cCCHHHHHHHHHHHHhC---CCCCC---------HhhHHHHHHHHHhcC
Q 038622 178 EAVEILNQMILRDCSPNTITYNTLISTLCK-ENQVEEATELARVLTSK---GILPD---------VCTFNSLIQGLCLTS 244 (587)
Q Consensus 178 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~---~~~~~---------~~~~~~l~~~~~~~~ 244 (587)
. .+...+...+...-..+-..+.. ...+..+.+.+.+-... ....+ ..++......+.-.|
T Consensus 267 ~------~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g 340 (606)
T KOG0547|consen 267 P------LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKG 340 (606)
T ss_pred c------cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcC
Confidence 0 00000000000000000000000 01233333332221110 00001 122233333455667
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 038622 245 NFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFD 324 (587)
Q Consensus 245 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 324 (587)
+.-.|..-|+..+... +.+...|..++..|...++.++....|..+.+.+ |.++.+|..-++.+.-.+++++|..-|+
T Consensus 341 ~~~~a~~d~~~~I~l~-~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~ 418 (606)
T KOG0547|consen 341 DSLGAQEDFDAAIKLD-PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQ 418 (606)
T ss_pred CchhhhhhHHHHHhcC-cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHH
Confidence 7788888888887775 3333347777777888888888888888887776 6667777777887777888888888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--
Q 038622 325 EMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCE-- 402 (587)
Q Consensus 325 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-- 402 (587)
+....+ |.+...|..+.-+..+.++++++...|++.... ++..+..|+...+.+..++++++|.+.|+..++....
T Consensus 419 Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~ 496 (606)
T KOG0547|consen 419 KAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREH 496 (606)
T ss_pred HHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccc
Confidence 877765 556666766776777777888888888888775 4556677888888888888888888888877764211
Q ss_pred ---CCcchH--HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038622 403 ---PDIVTY--GTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMME 468 (587)
Q Consensus 403 ---~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 468 (587)
.+...+ ..++..- -.+++..|..+++++.+.++. ...++..|+.....+|+.++|+++|++...
T Consensus 497 ~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 497 LIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred cccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 011111 1111111 236777777777777775443 446777777777777777777777777765
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=5.2e-18 Score=156.07 Aligned_cols=290 Identities=16% Similarity=0.087 Sum_probs=235.8
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHH
Q 038622 279 GMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGI--SRNSVTYNTLIDGLCKSRRVEDAAQ 356 (587)
Q Consensus 279 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~ 356 (587)
-+..+|+..|..+... +.....+...++.+|...+++++|.++|+.+.+... -.+..+|...+..+.+ +-++.
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls 407 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALS 407 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHH
Confidence 3567899999995544 355567788899999999999999999999977641 1245666666654422 22333
Q ss_pred HHH-HHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038622 357 LMD-QMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKG 435 (587)
Q Consensus 357 ~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 435 (587)
.+. .++.. -+..+.+|..++.+|.-+++.+.|++.|++++..++. ...+|..++.=+....++|.|...|+.++..+
T Consensus 408 ~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 408 YLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 333 33332 3446789999999999999999999999999985432 57788888888888999999999999998854
Q ss_pred CCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHH
Q 038622 436 IVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSF 514 (587)
Q Consensus 436 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~ 514 (587)
+. +-.+|..++..|.++++++.|.-.|+++++.+ |.+......++..+.+.|+ .++|+.+++++.. ++| ++-..
T Consensus 486 ~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~-~d~AL~~~~~A~~--ld~kn~l~~ 560 (638)
T KOG1126|consen 486 PR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKR-KDKALQLYEKAIH--LDPKNPLCK 560 (638)
T ss_pred ch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhh-hhHHHHHHHHHHh--cCCCCchhH
Confidence 33 45789999999999999999999999999965 6666777778888888999 9999999999998 456 88888
Q ss_pred HHHHHHHHccCCHhHHHHHHHHHHhcCCCCCc-hhhhhhhHHHHHHHHHHHHhcchhhhccCchhhh
Q 038622 515 YMLAEGLVSLGKEETLVELIDMVMDKAKFSDR-ETSMVRGFLKIRKFQDALATFGDILDSRMPRKTF 580 (587)
Q Consensus 515 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 580 (587)
+..+.++...+++++|...++++.+.-|+... ...++.+|.+.|+.+.|+..|.=+.+-.|+..++
T Consensus 561 ~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~i 627 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQI 627 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccchh
Confidence 99999999999999999999999999998754 7888899999999999999999999988887763
No 40
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=2.6e-15 Score=135.64 Aligned_cols=473 Identities=13% Similarity=0.036 Sum_probs=263.9
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 038622 10 DMVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVT 89 (587)
Q Consensus 10 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 89 (587)
.....+..|+..- -+++++.-.|++.+|..+...-.-. ..|.......+..+.+..++++|..++..... ..+
T Consensus 41 kV~~l~~dp~d~~--~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~---~~~ 113 (611)
T KOG1173|consen 41 KVAGLTNDPADIY--WLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCLVKLKEWDQALLVLGRGHV---ETN 113 (611)
T ss_pred HHHhccCChHHHH--HHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHhcccch---hhc
Confidence 3333333444333 4668888889999998877654322 45777788888888899999999988773311 001
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHH---H
Q 038622 90 NVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNS---L 166 (587)
Q Consensus 90 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l 166 (587)
+..+..-- + ...-+.+.+. +... ..........-...|....++++|...|.++... |...+.. +
T Consensus 114 ~f~yy~~~-~-~~~l~~n~~~----~~~~--~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~----D~~c~Ea~~~l 181 (611)
T KOG1173|consen 114 PFSYYEKD-A-ANTLELNSAG----EDLM--INLESSICYLRGKVYVALDNREEARDKYKEALLA----DAKCFEAFEKL 181 (611)
T ss_pred chhhcchh-h-hceeccCccc----cccc--ccchhceeeeeeehhhhhccHHHHHHHHHHHHhc----chhhHHHHHHH
Confidence 11110000 0 0000000111 0000 0111222233344455555666666666666543 2222221 1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC----CCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 038622 167 ISGLCKLGEVEEAVEILNQMILRDC----SPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCL 242 (587)
Q Consensus 167 ~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 242 (587)
+....- .+.+.++.+...+. ..+......+.....-...-+.....-....-.+...+.........-+..
T Consensus 182 vs~~ml-----t~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~ 256 (611)
T KOG1173|consen 182 VSAHML-----TAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYY 256 (611)
T ss_pred HHHHhc-----chhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHH
Confidence 111111 11111111111100 001111111111110000000000000000011123355555556666677
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 038622 243 TSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEI 322 (587)
Q Consensus 243 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 322 (587)
.+++.+..++.+.+.+.. ++....+-.-+.++...|+..+-..+=.++.+.- |..+.+|..++.-|...|++.+|.+.
T Consensus 257 ~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry 334 (611)
T KOG1173|consen 257 GCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRY 334 (611)
T ss_pred cChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHH
Confidence 777888888887777664 5566666555667777777776666666666653 56667777777777777888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 038622 323 FDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCE 402 (587)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 402 (587)
|.+....+ +.-...|...+..|.-.+..++|+..|..+.+. .+-....+..++--|.+.++.+.|.++|..+....+
T Consensus 335 ~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P- 411 (611)
T KOG1173|consen 335 FSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAP- 411 (611)
T ss_pred HHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCC-
Confidence 87776554 334456777777777777888888877777663 111222233444556777788888888877776422
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC--CChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH
Q 038622 403 PDIVTYGTLIGGLCKAGRVEVASKLLRSIQMK----GIV--LTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDAL 476 (587)
Q Consensus 403 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 476 (587)
.|+..++.++-.....+.+.+|..+|+..+.. +.. .-..+++.++.++.+.+.+++|+..+++++... +.+..
T Consensus 412 ~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~ 490 (611)
T KOG1173|consen 412 SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDAS 490 (611)
T ss_pred CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchh
Confidence 25556666766666777888888888776632 100 122457788888888888888888888888764 67777
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 038622 477 TYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFY 515 (587)
Q Consensus 477 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~ 515 (587)
++..++..+...|+ ++.|++.|.+++- +.|+.....
T Consensus 491 ~~asig~iy~llgn-ld~Aid~fhKaL~--l~p~n~~~~ 526 (611)
T KOG1173|consen 491 THASIGYIYHLLGN-LDKAIDHFHKALA--LKPDNIFIS 526 (611)
T ss_pred HHHHHHHHHHHhcC-hHHHHHHHHHHHh--cCCccHHHH
Confidence 77777777888888 8888888888886 567554443
No 41
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=1.4e-17 Score=153.30 Aligned_cols=287 Identities=15% Similarity=0.130 Sum_probs=234.9
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHccCCHHHHHHH
Q 038622 245 NFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGC--ARNVVTYNTLIDGFCKLKRIEEAEEI 322 (587)
Q Consensus 245 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~ 322 (587)
+..+|...|..+... +.-.......++++|...+++++|.++|+.+.+... -.+...|...+..+- + +-++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq---~-~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQ---D-EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHH---h-hHHHHH
Confidence 568899999985544 344456777899999999999999999999987640 123445555544322 2 223333
Q ss_pred HH-HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 038622 323 FD-EMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKP-DKFTYNSLLTYYCRAGDIKRAADIVQNMTSNG 400 (587)
Q Consensus 323 ~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 400 (587)
+. .+... .+..+.+|..++.+|.-+++.+.|++.|+++++. .| ...+|+.++.-+.....++.|...|+.++..+
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 33 33333 3778899999999999999999999999999984 55 56789999988999999999999999998754
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 038622 401 CEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKH 480 (587)
Q Consensus 401 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 480 (587)
.+ +..+|..++..|.++++++.|.-.|+++.+.++. +......++..+.+.|+.++|+.+++++...+ +.++..-..
T Consensus 486 ~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~ 562 (638)
T KOG1126|consen 486 PR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYH 562 (638)
T ss_pred ch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHH
Confidence 33 5567888999999999999999999999996554 56777889999999999999999999999986 677777777
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCC
Q 038622 481 VFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSD 545 (587)
Q Consensus 481 l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 545 (587)
.+..+...++ +++|...++++.+ +.| +..++..++.+|.+.|+.+.|+..|--+.+.+|...
T Consensus 563 ~~~il~~~~~-~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 563 RASILFSLGR-YVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHHHhhcc-hHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 8888899999 9999999999998 667 678889999999999999999999999999999863
No 42
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=5.7e-14 Score=123.84 Aligned_cols=365 Identities=15% Similarity=0.079 Sum_probs=265.2
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh--h
Q 038622 120 GFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTI--T 197 (587)
Q Consensus 120 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~ 197 (587)
+...|...+...+..+.+.|....|+..|...... .|-.-.+|..+... ..+ +++...+.... +.+.. .
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~l---it~----~e~~~~l~~~l-~~~~h~M~ 229 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSEL---ITD----IEILSILVVGL-PSDMHWMK 229 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHh---hch----HHHHHHHHhcC-cccchHHH
Confidence 33556666677777888889999999999988764 12233333333332 222 23333333222 22211 2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---CHHhHHHHHHH
Q 038622 198 YNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQP---DEFTYNMLIDS 274 (587)
Q Consensus 198 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~ 274 (587)
-..+..++....+.+++.+-.+.+...|++.+...-+....+.....|+++|+.+|+++.+.. |- |..+|..++-.
T Consensus 230 ~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knD-PYRl~dmdlySN~LYv 308 (559)
T KOG1155|consen 230 KFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKND-PYRLDDMDLYSNVLYV 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcchhHHHHhHHHHH
Confidence 223455666677888999888888888888777666777777888899999999999999873 22 34566655433
Q ss_pred HHccCChHHHHHHHHH-HHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 038622 275 LCSRGMLEEALKLLKE-MESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVED 353 (587)
Q Consensus 275 ~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 353 (587)
+..+.. +.++-. ....+ +-.+.+...+++-|+-.++.++|...|++.++.+ |.....|..++.-|...++...
T Consensus 309 --~~~~sk--Ls~LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~A 382 (559)
T KOG1155|consen 309 --KNDKSK--LSYLAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHA 382 (559)
T ss_pred --HhhhHH--HHHHHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHH
Confidence 222111 222222 22222 3455677788888999999999999999999987 6677889999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038622 354 AAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQM 433 (587)
Q Consensus 354 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 433 (587)
|++.|+++++-. +.|-..|..++++|.-.+.+.-|+-+|+++....+. |...|..|+.+|.+.++.++|++.|.++..
T Consensus 383 Ai~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~ 460 (559)
T KOG1155|consen 383 AIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAIL 460 (559)
T ss_pred HHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 999999999863 347889999999999999999999999999986433 788999999999999999999999999998
Q ss_pred cCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCC--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 038622 434 KGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEK----ADPPD--ALTYKHVFRGLCNGGGPIGEAVDFVIEMLE 504 (587)
Q Consensus 434 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 504 (587)
.+-. +...+..++..+.+.++.++|...|++.++. |...+ ......+..-+.+.++ +++|..+......
T Consensus 461 ~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~-~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 461 LGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKD-FDEASYYATLVLK 535 (559)
T ss_pred cccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcc-hHHHHHHHHHHhc
Confidence 7533 5688999999999999999999999998873 22222 2223334555666777 8888888777765
No 43
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.79 E-value=1.5e-15 Score=144.01 Aligned_cols=293 Identities=12% Similarity=0.035 Sum_probs=188.7
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCC-HHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 038622 241 CLTSNFDVAMELFQEMKTKGCQPD-EFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEA 319 (587)
Q Consensus 241 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 319 (587)
...|+++.|.+.+.+..+. .|+ ...+...+.+....|+++.|.+++.++.+....+........+..+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 4567888888887776655 333 3344455667777788888888888776543111122333356777778888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHH-HHH---HHHhcCCHHHHHHHHHH
Q 038622 320 EEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNS-LLT---YYCRAGDIKRAADIVQN 395 (587)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~---~~~~~~~~~~A~~~~~~ 395 (587)
...++.+.+.. |.++.....+...+...|+++.|.+.+....+.+.. +...+.. -.. .....+..+.+...+..
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 88888887765 556677777788888888888888888888776543 2222211 111 11222233333344444
Q ss_pred HHHCCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHh-HHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 038622 396 MTSNGC---EPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQA-YNPVIQALFRRKRTTEAMRLFREMMEKAD 471 (587)
Q Consensus 396 ~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 471 (587)
+....+ +.+...+..++..+...|+.++|.+.+++..+..+...... ...........++.+.+.+.+++.++..
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~- 329 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV- 329 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-
Confidence 444322 12666777788888888888888888888887533321111 1112222234577788888888888763
Q ss_pred CCCH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 038622 472 PPDA--LTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMD 539 (587)
Q Consensus 472 ~~~~--~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 539 (587)
|.++ .....+++.+.+.|+ +++|.++|+++......|++..+..++.++.+.|+.++|.+++++.+.
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~-~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGE-FIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CCChhHHHHHHHHHHHHHccc-HHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4555 566678888888888 888888888433222568877777888888888888888888888654
No 44
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.78 E-value=3.3e-15 Score=140.86 Aligned_cols=286 Identities=10% Similarity=0.069 Sum_probs=200.3
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHhHHHH-HHHHHccCChHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHccCCHHH
Q 038622 242 LTSNFDVAMELFQEMKTKGCQPDEFTYNML-IDSLCSRGMLEEALKLLKEMESSGCARNVVTY--NTLIDGFCKLKRIEE 318 (587)
Q Consensus 242 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~ 318 (587)
..|+++.|.+......+. .+++..+..+ +.+....|+++.|...+.++.+.. |+.... ...+..+...|+++.
T Consensus 96 ~eGd~~~A~k~l~~~~~~--~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADH--AEQPVVNYLLAAEAAQQRGDEARANQHLERAAELA--DNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred hCCCHHHHHHHHHHHHhc--ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHCCCHHH
Confidence 367888888777665543 2233333333 444477888888888888887653 333222 233667778888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHh-------hHHHHHHHHHhcCCHHHHHH
Q 038622 319 AEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKF-------TYNSLLTYYCRAGDIKRAAD 391 (587)
Q Consensus 319 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~A~~ 391 (587)
|...++.+.+.. |.++.....+...|.+.|++++|..++..+.+.+..++.. .+..++.......+.+...+
T Consensus 172 Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 172 ARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 888888887765 6667777788888888888888888888888764432221 22222333333445566666
Q ss_pred HHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 038622 392 IVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKAD 471 (587)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 471 (587)
+|+.+.+. .+.++.....++..+...|+.++|.+++++..+. .+++... +.......++.+++++.+++..+..
T Consensus 251 ~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~- 324 (398)
T PRK10747 251 WWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH- 324 (398)
T ss_pred HHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-
Confidence 66665443 2336677888888889999999999999888874 3444332 2333345588899999999888863
Q ss_pred CCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcC
Q 038622 472 PPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKA 541 (587)
Q Consensus 472 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 541 (587)
|.|+.....++..+...++ +++|.+.|+++++ ..|+...+..++.++.+.|+.++|.+++++.+...
T Consensus 325 P~~~~l~l~lgrl~~~~~~-~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 325 GDTPLLWSTLGQLLMKHGE-WQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred CCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 6666677788888888888 9999999999988 56888888889999999999999999999887643
No 45
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.78 E-value=1.3e-18 Score=156.86 Aligned_cols=261 Identities=14% Similarity=0.142 Sum_probs=78.2
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 038622 305 TLIDGFCKLKRIEEAEEIFDEMEIQG-ISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRA 383 (587)
Q Consensus 305 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 383 (587)
.++..+...|++++|++++....... .+.+...|..+.......++++.|...++++...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 34555566666666666664433322 2334444444555555566666666666666654221 33344444444 455
Q ss_pred CCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChHhHHHHHHHHHhcCCHHHHHHH
Q 038622 384 GDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKG-IVLTPQAYNPVIQALFRRKRTTEAMRL 462 (587)
Q Consensus 384 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~ 462 (587)
+++++|..+++...+.. +++..+..++..+...++++++..+++.+.... .+.+...|..++..+.+.|++++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666665544432 334445555555666666666666666655431 223445566666666666666666666
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCC
Q 038622 463 FREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAK 542 (587)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 542 (587)
++++++.. |.+......+++.+...|+ .+++.+.++...+.. +.++..+..++.+|...|++++|+.+++++.+..|
T Consensus 169 ~~~al~~~-P~~~~~~~~l~~~li~~~~-~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p 245 (280)
T PF13429_consen 169 YRKALELD-PDDPDARNALAWLLIDMGD-YDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP 245 (280)
T ss_dssp HHHHHHH--TT-HHHHHHHHHHHCTTCH-HHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHCCC-hHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccc
Confidence 66666653 4445555566666666666 666666666655432 23555556666666666666666666666666666
Q ss_pred CCCc-hhhhhhhHHHHHHHHHHHHhcchhhh
Q 038622 543 FSDR-ETSMVRGFLKIRKFQDALATFGDILD 572 (587)
Q Consensus 543 ~~~~-~~~~~~~~~~~~~~~~A~~~~~~~~~ 572 (587)
.+.. ...++.++.+.|+.++|.....++..
T Consensus 246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 246 DDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp T-HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 5433 45666666666666666666655543
No 46
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.78 E-value=1.8e-18 Score=156.00 Aligned_cols=262 Identities=19% Similarity=0.207 Sum_probs=107.0
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 038622 270 MLIDSLCSRGMLEEALKLLKEMESSG-CARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKS 348 (587)
Q Consensus 270 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 348 (587)
.++..+...|++++|+++++...... .+.+...|..++......++++.|...++++...+ +.++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 55777888888888888886544332 24555666677777778888888888888887765 3355566666666 678
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCcchHHHHHHHHHhcCChHHHHHH
Q 038622 349 RRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNG-CEPDIVTYGTLIGGLCKAGRVEVASKL 427 (587)
Q Consensus 349 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~ 427 (587)
+++++|..++.+..+. .+++..+..++..+...++++++..+++.+.... ..++...|..++..+.+.|+.++|.+.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8888888888877664 3456667777888888899999999888877542 234666778888888899999999999
Q ss_pred HHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 038622 428 LRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGF 507 (587)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~ 507 (587)
++++++..+. +......++..+...|+.+++.++++...+.. +.++..+..++.++...|+ .++|..+++++.+.+
T Consensus 169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~-~~~Al~~~~~~~~~~- 244 (280)
T PF13429_consen 169 YRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGR-YEEALEYLEKALKLN- 244 (280)
T ss_dssp HHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT--HHHHHHHHHHHHHHS-
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccc-ccccccccccccccc-
Confidence 9999886443 56778888888888999998888888887763 5566677788888888898 999999999988743
Q ss_pred CCCHHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 038622 508 LPEFSSFYMLAEGLVSLGKEETLVELIDMVMD 539 (587)
Q Consensus 508 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 539 (587)
+.|+.+...++.++...|+.++|.++.+++.+
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 33788888999999999999999998888765
No 47
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.77 E-value=1.3e-15 Score=144.50 Aligned_cols=293 Identities=13% Similarity=0.021 Sum_probs=219.3
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 038622 274 SLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVED 353 (587)
Q Consensus 274 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 353 (587)
.....|+++.|.+.+.+..+.. +.+...+...+.+....|+++.|.+.+.++.+....+...........+...|+++.
T Consensus 93 la~~~g~~~~A~~~l~~~~~~~-~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 93 LKLAEGDYAKAEKLIAKNADHA-AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred HHHhCCCHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHH
Confidence 3457899999999999987764 333444556678888999999999999998775422222334445788889999999
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHH----HHHHHHHhcCChHHHHHHHH
Q 038622 354 AAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYG----TLIGGLCKAGRVEVASKLLR 429 (587)
Q Consensus 354 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~ 429 (587)
|...++.+.+.. +-+...+..++..+...|+++.|.+.+..+.+.+.. +...+. .........+..+++.+.+.
T Consensus 172 Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~ 249 (409)
T TIGR00540 172 ARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLL 249 (409)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 999999999874 336678888999999999999999999999987654 332221 11122233334444445565
Q ss_pred HHHHcCCC---CChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH--HHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 038622 430 SIQMKGIV---LTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALT--YKHVFRGLCNGGGPIGEAVDFVIEMLE 504 (587)
Q Consensus 430 ~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~A~~~~~~~~~ 504 (587)
.+....+. .++..+..++..+...|++++|.+.+++.++.. |++... ...........++ .+.+.+.+++.++
T Consensus 250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-pd~~~~~~~~l~~~~~l~~~~-~~~~~~~~e~~lk 327 (409)
T TIGR00540 250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-GDDRAISLPLCLPIPRLKPED-NEKLEKLIEKQAK 327 (409)
T ss_pred HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-CCcccchhHHHHHhhhcCCCC-hHHHHHHHHHHHH
Confidence 55554221 377888999999999999999999999999963 333321 1111112233455 8999999999998
Q ss_pred cCCCC-CH--HHHHHHHHHHHccCCHhHHHHHHH--HHHhcCCCCCchhhhhhhHHHHHHHHHHHHhcchhhhc
Q 038622 505 RGFLP-EF--SSFYMLAEGLVSLGKEETLVELID--MVMDKAKFSDRETSMVRGFLKIRKFQDALATFGDILDS 573 (587)
Q Consensus 505 ~~~~p-~~--~~~~~l~~~~~~~g~~~~A~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 573 (587)
. .| ++ .....+|+++.+.|++++|.+.++ .+.+..|+++...+++..+.+.|+.++|...|++.+..
T Consensus 328 ~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 328 N--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred h--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4 46 67 778899999999999999999999 57788888877889999999999999999999987543
No 48
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.77 E-value=2.7e-14 Score=121.49 Aligned_cols=458 Identities=14% Similarity=0.085 Sum_probs=280.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCh
Q 038622 62 MQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHV 141 (587)
Q Consensus 62 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 141 (587)
+.-+....++..|+.+++-....+-.....+-.-++.++.+.|++++|+..+..+.... .++...+..++..+.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 55666778899999988887765433222334446677888899999999888877654 66677777788777778888
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHH
Q 038622 142 KQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVL 221 (587)
Q Consensus 142 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 221 (587)
.+|..+-.++.+ ++-....+.....+.++-++-...-+.+.. ..+--.+|+......-++++|+++|.++
T Consensus 108 ~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 108 IEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 888887666432 344445555666677776666555444432 2344456667766777888999999888
Q ss_pred HhCCCCCCHhhHHH-HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH
Q 038622 222 TSKGILPDVCTFNS-LIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNV 300 (587)
Q Consensus 222 ~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 300 (587)
+..+ |+-...+. +.-+|.+..-++.+.+++.-..+. ++.++.+.+..+....+.=+-..|..-.+.+.+.+ ....
T Consensus 178 L~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~-~~~~ 253 (557)
T KOG3785|consen 178 LQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNI-DQEY 253 (557)
T ss_pred HhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcc-cccc
Confidence 7652 33333333 344667777788888888877765 23334444444444444433344444455555433 1111
Q ss_pred HHHHHHHH-HHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 038622 301 VTYNTLID-GFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTY 379 (587)
Q Consensus 301 ~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 379 (587)
.....+.+ -+.--.+-+.|++++-.+... -| ..-..++-.|.+.++..+|..+.++... ..| .-|..-+-.
T Consensus 254 ~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP--~EyilKgvv 325 (557)
T KOG3785|consen 254 PFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLDP--TTP--YEYILKGVV 325 (557)
T ss_pred hhHHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcCC--CCh--HHHHHHHHH
Confidence 11111111 111223456788877766543 12 2333455567788888888887766431 122 222222222
Q ss_pred HHhcC-------CHHHHHHHHHHHHHCCCCCC-cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHH
Q 038622 380 YCRAG-------DIKRAADIVQNMTSNGCEPD-IVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALF 451 (587)
Q Consensus 380 ~~~~~-------~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 451 (587)
+...| ...-|.+.|+..-+.+..-| ..--..++..+.-..++++.+.++..+..- +..+......++.+++
T Consensus 326 ~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~ 404 (557)
T KOG3785|consen 326 FAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKL 404 (557)
T ss_pred HHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHH
Confidence 33333 23445566655544433322 333455666677777888888888887765 3334444457888888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHccCCHhH
Q 038622 452 RRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP--EFSSFYMLAEGLVSLGKEET 529 (587)
Q Consensus 452 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~ 529 (587)
..|++.+|.++|-++..-.+..+......++.++.+.++ .+-|...+-++ + .| ....+..+++.|++.+.+=-
T Consensus 405 atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkk-P~lAW~~~lk~---~-t~~e~fsLLqlIAn~CYk~~eFyy 479 (557)
T KOG3785|consen 405 ATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKK-PQLAWDMMLKT---N-TPSERFSLLQLIANDCYKANEFYY 479 (557)
T ss_pred HhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCC-chHHHHHHHhc---C-CchhHHHHHHHHHHHHHHHHHHHH
Confidence 888999888888877654333333333445555666666 77776655443 2 23 34555667788888888888
Q ss_pred HHHHHHHHHhcCCCCCchh
Q 038622 530 LVELIDMVMDKAKFSDRET 548 (587)
Q Consensus 530 A~~~~~~~~~~~~~~~~~~ 548 (587)
|.+.|+.+-..+|.++.|.
T Consensus 480 aaKAFd~lE~lDP~pEnWe 498 (557)
T KOG3785|consen 480 AAKAFDELEILDPTPENWE 498 (557)
T ss_pred HHHhhhHHHccCCCccccC
Confidence 8888888888888887765
No 49
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=4.2e-14 Score=120.30 Aligned_cols=453 Identities=14% Similarity=0.088 Sum_probs=293.1
Q ss_pred HHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 038622 27 IKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRI 106 (587)
Q Consensus 27 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 106 (587)
+.-++...++..|+.+++.....+-.....+-..++.++.+.|++++|+..|+.+.+.+ .++...+..|+-++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 56677789999999999887755433333455557788899999999999999998865 66777888899999999999
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 038622 107 EDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQM 186 (587)
Q Consensus 107 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 186 (587)
.+|..+..+.. .++..-..+.....+.++-++....-+.+... ...-..++......-.+++|+++|..+
T Consensus 108 ~eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 108 IEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 99998876543 34555566777777888877777766665432 233344555555566799999999999
Q ss_pred HhCCCCCChhh-HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCH
Q 038622 187 ILRDCSPNTIT-YNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDE 265 (587)
Q Consensus 187 ~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 265 (587)
+..+ |+-.+ -..++-+|.+..-++-+.+++...+.. ++.++.+.+..+....+.-+-..|..-.+.+...+.. .
T Consensus 178 L~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~-~- 252 (557)
T KOG3785|consen 178 LQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ-E- 252 (557)
T ss_pred HhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc-c-
Confidence 8763 23333 334667888888888888888887775 3334444444444444443333344444444433211 1
Q ss_pred HhHHHHHHHHHcc-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 038622 266 FTYNMLIDSLCSR-----GMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNT 340 (587)
Q Consensus 266 ~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 340 (587)
...+.-.++. .+-+.|++++-.+.+. -+.+...++--|.+.++.++|..+...+. |.++.-|..
T Consensus 253 ---~~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~Eyil 321 (557)
T KOG3785|consen 253 ---YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYIL 321 (557)
T ss_pred ---chhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcC----CCChHHHHH
Confidence 1122222222 3456788877776653 22344556667889999999998877653 444544444
Q ss_pred HHHHHHhcCC-------HHHHHHHHHHHHHcCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHH
Q 038622 341 LIDGLCKSRR-------VEDAAQLMDQMIMEGLKPDK-FTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLI 412 (587)
Q Consensus 341 l~~~~~~~~~-------~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 412 (587)
-+..+...|+ ..-|.+.|+-.-..+..-|. .--..+..++.-..++++.+.++..+...- ..|......++
T Consensus 322 Kgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF-~NdD~Fn~N~A 400 (557)
T KOG3785|consen 322 KGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYF-TNDDDFNLNLA 400 (557)
T ss_pred HHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchhhhHHH
Confidence 4444444443 33444444433333222221 123344555555667899998888887753 33444556789
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChHhH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHHHhCCC
Q 038622 413 GGLCKAGRVEVASKLLRSIQMKGIVLTPQAY-NPVIQALFRRKRTTEAMRLFREMMEKADPPDALTY-KHVFRGLCNGGG 490 (587)
Q Consensus 413 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~ 490 (587)
++++..|++.+|.++|-++....++ +..+| ..++++|.+.++++.|+.++-++-. +.+...+ ..++..|...+.
T Consensus 401 QAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~e 476 (557)
T KOG3785|consen 401 QAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANE 476 (557)
T ss_pred HHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888765455 34444 5678899999999999887765532 3344433 344556778887
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHH
Q 038622 491 PIGEAVDFVIEMLERGFLPEFSSF 514 (587)
Q Consensus 491 ~~~~A~~~~~~~~~~~~~p~~~~~ 514 (587)
+--|-+.|..+-. .+|+++.|
T Consensus 477 -FyyaaKAFd~lE~--lDP~pEnW 497 (557)
T KOG3785|consen 477 -FYYAAKAFDELEI--LDPTPENW 497 (557)
T ss_pred -HHHHHHhhhHHHc--cCCCcccc
Confidence 6666667766554 56777666
No 50
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.76 E-value=1.8e-12 Score=119.16 Aligned_cols=522 Identities=10% Similarity=0.066 Sum_probs=314.0
Q ss_pred hhHHHHHHHHHHcCChhhHHHHHHhhccC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 038622 21 STFNILIKALCKAHQIRPAILMMEEMPGY-GLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHG 99 (587)
Q Consensus 21 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 99 (587)
.+|...+..+.++|+...-...|..++.. .+.....+|-..+.-..+.|-++-++.+|++.++.. +......+..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~----P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA----PEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC----HHHHHHHHHH
Confidence 56777777777777777777777776643 223345567777777777777777777777777653 2334556666
Q ss_pred HHhcCCHHHHHHHHHHHHHCC------CCCChhhHHHHHHHHHhcCChH---HHHHHHHHHHhCCCCCC--cccHHHHHH
Q 038622 100 FCKEGRIEDALSFIQEMVSEG------FNPDQFTYNTLVNGLCKVGHVK---QALEVMDMMLQEGFDPD--VFTYNSLIS 168 (587)
Q Consensus 100 ~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~--~~~~~~l~~ 168 (587)
++..+++++|.+.+...+... .+.+-..|..+.....+.-+.- ...++++.+... -+| ...|..|+.
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLAD 256 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHH
Confidence 777777777777777665431 1333445555555555443322 233344444432 223 345677778
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhcc----------------C------CHHHHHHHHHHHHhCC-
Q 038622 169 GLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKE----------------N------QVEEATELARVLTSKG- 225 (587)
Q Consensus 169 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~------~~~~a~~~~~~~~~~~- 225 (587)
-|.+.|.++.|..+|++.+..- ....-+..+...|..- + +++-....++.+....
T Consensus 257 YYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~ 334 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRP 334 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccc
Confidence 8888888888888888776541 1222233333322211 1 1112222333333221
Q ss_pred ----------CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC------HHhHHHHHHHHHccCChHHHHHHHH
Q 038622 226 ----------ILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPD------EFTYNMLIDSLCSRGMLEEALKLLK 289 (587)
Q Consensus 226 ----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~ 289 (587)
.+.++..|..-.. ...|+..+-...|.++++. +.|. ...|..++..|-..|+.+.|..+|+
T Consensus 335 ~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvife 411 (835)
T KOG2047|consen 335 LLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFE 411 (835)
T ss_pred hHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHH
Confidence 1112333333222 2345666777777777653 1222 3567788888888888888888888
Q ss_pred HHHHCCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-----------------CCHHHHHHHHHHHHhcC
Q 038622 290 EMESSGCARN---VVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGIS-----------------RNSVTYNTLIDGLCKSR 349 (587)
Q Consensus 290 ~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------------~~~~~~~~l~~~~~~~~ 349 (587)
+..+...+.- ..+|...+..-.+..+++.|+++.+.+.....+ .+..+|...+......|
T Consensus 412 ka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~g 491 (835)
T KOG2047|consen 412 KATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLG 491 (835)
T ss_pred HhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhc
Confidence 8876543222 345555566666777888888888776432111 01234555555556677
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc-chHHHHHHHHH---hcCChHHHH
Q 038622 350 RVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDI-VTYGTLIGGLC---KAGRVEVAS 425 (587)
Q Consensus 350 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~---~~~~~~~a~ 425 (587)
-++....+|+++++..+. ++......+..+-...-++++.++|++-+..-..|+. .+|+..+.-+. ....++.|.
T Consensus 492 tfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraR 570 (835)
T KOG2047|consen 492 TFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERAR 570 (835)
T ss_pred cHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 888888888888876443 4444444444455666778888888877765444443 34444333332 233788889
Q ss_pred HHHHHHHHcCCCCCh--HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 038622 426 KLLRSIQMKGIVLTP--QAYNPVIQALFRRKRTTEAMRLFREMMEKADPPD--ALTYKHVFRGLCNGGGPIGEAVDFVIE 501 (587)
Q Consensus 426 ~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~A~~~~~~ 501 (587)
.+|+++++. .+|.. ..|...+..-...|-...|+.+|+++... +++. ...|+.++.-....-+ ...-..+|++
T Consensus 571 dLFEqaL~~-Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yG-v~~TR~iYek 647 (835)
T KOG2047|consen 571 DLFEQALDG-CPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYG-VPRTREIYEK 647 (835)
T ss_pred HHHHHHHhc-CCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhC-CcccHHHHHH
Confidence 999888883 33333 23333344444568888888888887764 2332 2345555555444444 6777889999
Q ss_pred HHHcCCCCCH---HHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC---CchhhhhhhHHHHHH
Q 038622 502 MLERGFLPEF---SSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS---DRETSMVRGFLKIRK 559 (587)
Q Consensus 502 ~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 559 (587)
+++. -|+. ......++.-.+.|..+.|+.+|.-..+..+.. +.|..|-..-+++|+
T Consensus 648 aIe~--Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 648 AIES--LPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred HHHh--CChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC
Confidence 9983 4543 345667778889999999999998877765433 348888888888887
No 51
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.76 E-value=9.1e-13 Score=115.22 Aligned_cols=322 Identities=18% Similarity=0.241 Sum_probs=147.0
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHH--HHhcCChhHH-HHHHHHHHHcCCCCChhhHHHHHH
Q 038622 22 TFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQG--LIEEGNLDGA-LRIREQMVEHGCLVTNVTVNVLVH 98 (587)
Q Consensus 22 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A-~~~~~~~~~~~~~~~~~~~~~l~~ 98 (587)
+=+.|+. ....|....+.-+|+.|...|++.++.....+++. |..+.+..-| .+.|-.+...+ ..+..+|
T Consensus 118 ~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW----- 190 (625)
T KOG4422|consen 118 TENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW----- 190 (625)
T ss_pred chhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc-----
Confidence 3344444 35577788888888888887777777766655543 3333332211 11222222222 1111112
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHH
Q 038622 99 GFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEE 178 (587)
Q Consensus 99 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 178 (587)
+.|+..+ ++-+. .|.+..++..++.++++.-..+.|.+++++......+.+..+++.++.+-.-. .
T Consensus 191 ---K~G~vAd---L~~E~----~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~ 256 (625)
T KOG4422|consen 191 ---KSGAVAD---LLFET----LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----V 256 (625)
T ss_pred ---ccccHHH---HHHhh----cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----c
Confidence 1222111 11111 13344455555555555555555555555554444444445555544432221 1
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHH----HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHH-HHHHH
Q 038622 179 AVEILNQMILRDCSPNTITYNTLISTLCKENQVEEA----TELARVLTSKGILPDVCTFNSLIQGLCLTSNFDV-AMELF 253 (587)
Q Consensus 179 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~ 253 (587)
..+++.+|......||..+++.++.+..+.|+++.| .+++.+|.+.|+.|...+|..++..+.+.++..+ +..+.
T Consensus 257 ~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i 336 (625)
T KOG4422|consen 257 GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWI 336 (625)
T ss_pred cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHH
Confidence 144455555555555555555555555555544432 3444555555555555555555555554444322 33333
Q ss_pred HHHHHc----CC----CCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHccCCHHH
Q 038622 254 QEMKTK----GC----QPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSG----CARN---VVTYNTLIDGFCKLKRIEE 318 (587)
Q Consensus 254 ~~~~~~----~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~ 318 (587)
.++... .+ +.+...+...+..|....+.+-|.++..-+.... ++++ ...|..+..+.++....+.
T Consensus 337 ~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~ 416 (625)
T KOG4422|consen 337 NDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDV 416 (625)
T ss_pred HHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333221 11 1122333334444444444444444433322110 1111 1123344444455555555
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 038622 319 AEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIME 364 (587)
Q Consensus 319 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 364 (587)
-...|+.+.-.-+-|++.+...++++..-.+.++-.-++|..++..
T Consensus 417 ~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ 462 (625)
T KOG4422|consen 417 TLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEY 462 (625)
T ss_pred HHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHh
Confidence 5555555554444455555555555555555555555555555443
No 52
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.75 E-value=6.4e-12 Score=115.68 Aligned_cols=166 Identities=12% Similarity=0.037 Sum_probs=92.9
Q ss_pred CCCHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHcCC---CCC
Q 038622 17 KPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIE----EGNLDGALRIREQMVEHGC---LVT 89 (587)
Q Consensus 17 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~---~~~ 89 (587)
|.+.-+|--.|..-.. .-..+-..+|+++.+. ++.+..+|...+..-.. ..-.+.+...++...++.+ ..-
T Consensus 24 p~svk~W~RYIe~k~~-sp~k~~~~lYERal~~-lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHkm 101 (835)
T KOG2047|consen 24 PFSVKCWLRYIEHKAG-SPDKQRNLLYERALKE-LPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHKM 101 (835)
T ss_pred chhHHHHHHHHHHHcc-CChHHHHHHHHHHHHH-CCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhcC
Confidence 4555666655554332 2233444566666654 25566666666633221 1122333333333322221 234
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHH
Q 038622 90 NVTVNVLVHGFCKEGRIEDALSFIQEMVSE-GFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLIS 168 (587)
Q Consensus 90 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 168 (587)
+.+|...+..+..+|+....+..|++++.. .+.....+|...+......+-++.+..+|++.++. ++......+.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 566666777777777777777777776653 12223446777777767777777777777777663 2233555666
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 038622 169 GLCKLGEVEEAVEILNQMIL 188 (587)
Q Consensus 169 ~~~~~g~~~~a~~~~~~~~~ 188 (587)
.++..+++++|-+.+..++.
T Consensus 178 ~L~~~d~~~eaa~~la~vln 197 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLN 197 (835)
T ss_pred HHHhccchHHHHHHHHHhcC
Confidence 66777777777777666653
No 53
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.75 E-value=6.5e-13 Score=116.13 Aligned_cols=425 Identities=16% Similarity=0.207 Sum_probs=281.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC--CHHHH-HHHHHHHHHCCCCCChhhHHHHHHH
Q 038622 58 FTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEG--RIEDA-LSFIQEMVSEGFNPDQFTYNTLVNG 134 (587)
Q Consensus 58 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~ 134 (587)
-+.++. ...+|...++--+|+.|.+.|.+.++.+-..|...-+-.+ ++--| .+.|-.|.+.| ..+..+|.
T Consensus 119 E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sWK----- 191 (625)
T KOG4422|consen 119 ENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSWK----- 191 (625)
T ss_pred hhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-cccccccc-----
Confidence 344444 4467889999999999999998888888777766444333 22211 22333333333 22333442
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHH
Q 038622 135 LCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEA 214 (587)
Q Consensus 135 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 214 (587)
.|...+ -+++. .+.+..++..++.+.++.-..+.|.++|++......+.+..+++.++.+-.-. ..
T Consensus 192 ---~G~vAd--L~~E~-----~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~ 257 (625)
T KOG4422|consen 192 ---SGAVAD--LLFET-----LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VG 257 (625)
T ss_pred ---cccHHH--HHHhh-----cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----cc
Confidence 344333 23332 24467899999999999999999999999998876678888999888765433 33
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHH----HHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChH-HHHHHHH
Q 038622 215 TELARVLTSKGILPDVCTFNSLIQGLCLTSNFDV----AMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLE-EALKLLK 289 (587)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~ 289 (587)
.+++.+|....+.||..|++.++.+..+.|+++. |.+++.+|.+.|+.|...+|..++..+.+.++.. .+..++.
T Consensus 258 K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~ 337 (625)
T KOG4422|consen 258 KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIN 337 (625)
T ss_pred HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHH
Confidence 7788889888899999999999999999998765 4577788899999999999999999888877764 4666666
Q ss_pred HHHHC--C------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC----CCCC---HHHHHHHHHHHHhcCCHHHH
Q 038622 290 EMESS--G------CARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQG----ISRN---SVTYNTLIDGLCKSRRVEDA 354 (587)
Q Consensus 290 ~~~~~--~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~A 354 (587)
++... | .+.+...+...+..|....+.+-|.++..-+.... ++++ ..-|..+..+.++....+.-
T Consensus 338 dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~ 417 (625)
T KOG4422|consen 338 DIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVT 417 (625)
T ss_pred HHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66442 1 13344556677777888888888887776554321 2222 22345566677788888999
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcC-Ch--------H---
Q 038622 355 AQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAG-RV--------E--- 422 (587)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~--------~--- 422 (587)
...|+.++-.-.-|+..+...++++..-.+.++-..++|..++..|..-+......+...+++.. .+ .
T Consensus 418 ~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ 497 (625)
T KOG4422|consen 418 LKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAF 497 (625)
T ss_pred HHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHH
Confidence 99999998876778888888899988888999999999988887764433333334444443322 11 0
Q ss_pred --HHHHHH-------HHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-C---CCHHHHHHHHHHHHhCC
Q 038622 423 --VASKLL-------RSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKAD-P---PDALTYKHVFRGLCNGG 489 (587)
Q Consensus 423 --~a~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~---~~~~~~~~l~~~~~~~~ 489 (587)
-|..++ .++.+ ...+....+.++-.+.+.|.+++|.+++..+.+.+- - |....+..+.....+..
T Consensus 498 ak~aad~~e~~e~~~~R~r~--~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~ 575 (625)
T KOG4422|consen 498 AKCAADIKEAYESQPIRQRA--QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSN 575 (625)
T ss_pred HHHHHHHHHHHHhhHHHHHh--ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcC
Confidence 011111 11121 223445566677777777777777777777755421 1 22222223344434444
Q ss_pred CCHHHHHHHHHHHHHcC
Q 038622 490 GPIGEAVDFVIEMLERG 506 (587)
Q Consensus 490 ~~~~~A~~~~~~~~~~~ 506 (587)
. ...|+..++-|...+
T Consensus 576 s-psqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 576 S-PSQAIEVLQLASAFN 591 (625)
T ss_pred C-HHHHHHHHHHHHHcC
Confidence 4 666777776666543
No 54
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.75 E-value=2.5e-14 Score=134.89 Aligned_cols=284 Identities=9% Similarity=0.037 Sum_probs=168.4
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHH-HHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHH--HHHHHHHhcCCHHH
Q 038622 102 KEGRIEDALSFIQEMVSEGFNPDQFTYN-TLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYN--SLISGLCKLGEVEE 178 (587)
Q Consensus 102 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~ 178 (587)
..|+++.|.+.+....+.. +++..+. ....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.
T Consensus 96 ~eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred hCCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence 3577777777766655431 2222222 2344446777777777777777664 34433222 33566777777777
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHh-------hHHHHHHHHHhcCChHHHHH
Q 038622 179 AVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVC-------TFNSLIQGLCLTSNFDVAME 251 (587)
Q Consensus 179 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~ 251 (587)
|...++++.+.+ |.++.....+...|.+.|++++|.+++..+.+.+..++.. ++..++.......+.+...+
T Consensus 172 Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 172 ARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 777777777665 4466677777777777777777777777777664332111 12222222223334444445
Q ss_pred HHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 038622 252 LFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGI 331 (587)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 331 (587)
+++.+.+. .+.++.....++..+...|+.++|...+++..+. +++..... +.+....++.+++++..+...+..
T Consensus 251 ~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~~--l~~~l~~~~~~~al~~~e~~lk~~- 324 (398)
T PRK10747 251 WWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLVL--LIPRLKTNNPEQLEKVLRQQIKQH- 324 (398)
T ss_pred HHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHH--HHhhccCCChHHHHHHHHHHHhhC-
Confidence 55544332 1445666666667777777777777777666653 34442222 222234466666776666666554
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038622 332 SRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTS 398 (587)
Q Consensus 332 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 398 (587)
|.++.....++..+...+++++|.+.|+++... .|+...+..+..++.+.|+.++|..++++...
T Consensus 325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455556666666677777777777777776663 56666666666667777777777766666543
No 55
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.75 E-value=2.2e-14 Score=120.56 Aligned_cols=297 Identities=16% Similarity=0.186 Sum_probs=232.8
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHccCCH
Q 038622 240 LCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCAR---NVVTYNTLIDGFCKLKRI 316 (587)
Q Consensus 240 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~ 316 (587)
+.-..+.++|.++|-+|.+.+ +....+...++..+.+.|..+.|+++.+.+.+....+ ...+...++.-|...|-+
T Consensus 45 fLLs~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 45 FLLSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred HHhhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhh
Confidence 344678899999999999864 4456777889999999999999999999988752111 123566788889999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----hhHHHHHHHHHhcCCHHHHHHH
Q 038622 317 EEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDK----FTYNSLLTYYCRAGDIKRAADI 392 (587)
Q Consensus 317 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~ 392 (587)
+.|..+|..+.+.+ ..-......++..|....+|++|++.-++..+.+..+.. ..|..+...+....+.+.|...
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 99999999988754 345567788999999999999999999999886544432 2456677777788899999999
Q ss_pred HHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 038622 393 VQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADP 472 (587)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 472 (587)
+.++.+.+.+ ++..-..+++.....|+++.|.+.++.+.+.++..-+.+...+..+|...|+.++...++.++.+..
T Consensus 203 l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~-- 279 (389)
T COG2956 203 LKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN-- 279 (389)
T ss_pred HHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--
Confidence 9999987654 6777888999999999999999999999998766667888899999999999999999999999863
Q ss_pred CCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---ccCCHhHHHHHHHHHHhcCCCC
Q 038622 473 PDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLV---SLGKEETLVELIDMVMDKAKFS 544 (587)
Q Consensus 473 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~~ 544 (587)
+.......+......... .+.|..++.+-+.. .|+...++.+..... ..|...+-...++.++......
T Consensus 280 ~g~~~~l~l~~lie~~~G-~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~ 351 (389)
T COG2956 280 TGADAELMLADLIELQEG-IDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRR 351 (389)
T ss_pred CCccHHHHHHHHHHHhhC-hHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhh
Confidence 333333344444444455 68898888888874 699888888888765 3455677777777777655443
No 56
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.74 E-value=1.4e-12 Score=120.18 Aligned_cols=154 Identities=10% Similarity=0.070 Sum_probs=88.4
Q ss_pred hcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHH
Q 038622 67 EEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALE 146 (587)
Q Consensus 67 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 146 (587)
..+++...++..+.+++. .+....+....+-.+...|+-++|....+..++.+ ..+..+|..++-.+....++++|++
T Consensus 19 E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHH
Confidence 556666666666666663 34455555555555666666666666666655543 3345566666666666666666666
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 038622 147 VMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSK 224 (587)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 224 (587)
.|..+...+ +.|...+..+...-...|+++.....-....... +.....|..++.++.-.|++..|..+++...+.
T Consensus 97 cy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t 172 (700)
T KOG1156|consen 97 CYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKT 172 (700)
T ss_pred HHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666666543 2245555555555555666666555555555442 223445555566666666666666666555544
No 57
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=1.5e-13 Score=119.48 Aligned_cols=274 Identities=11% Similarity=0.031 Sum_probs=166.6
Q ss_pred CCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 038622 261 CQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNT 340 (587)
Q Consensus 261 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 340 (587)
++.|......++.++...|+.++|+..|++....+ +.+.......+-.+.+.|++++...+...+.... ......|.-
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV 305 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFV 305 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhh
Confidence 35556667777777777777777777777766554 3444444555555566677776666666554432 123333444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCC
Q 038622 341 LIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGR 420 (587)
Q Consensus 341 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 420 (587)
-+......++++.|+.+-++.++... .+...+..-+..+...+++++|.-.|+.++...+. +..+|..|+.+|...|+
T Consensus 306 ~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~-rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 306 HAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAVIAFRTAQMLAPY-RLEIYRGLFHSYLAQKR 383 (564)
T ss_pred hhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHHHHHHHHHhcchh-hHHHHHHHHHHHHhhch
Confidence 44445556677777777777766421 13334444456666777777777777776664222 56677777777777777
Q ss_pred hHHHHHHHHHHHHcCCCCChHhHHHHH-HHHH-hcCCHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhCCCCHHHHHH
Q 038622 421 VEVASKLLRSIQMKGIVLTPQAYNPVI-QALF-RRKRTTEAMRLFREMMEKADPPDA-LTYKHVFRGLCNGGGPIGEAVD 497 (587)
Q Consensus 421 ~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~A~~ 497 (587)
+.+|...-+...+. ++.+..+...++ ..+. ...--++|.+++++.+.. .|+. ...+.+...+...|. ++.++.
T Consensus 384 ~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~-~~D~i~ 459 (564)
T KOG1174|consen 384 FKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGP-TKDIIK 459 (564)
T ss_pred HHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCc-cchHHH
Confidence 77777666665554 222444444443 2222 223346677777777764 3443 334455555666666 777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC
Q 038622 498 FVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS 544 (587)
Q Consensus 498 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 544 (587)
++++.+. .-||......|++++...+.+.+|...|..++..+|.+
T Consensus 460 LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 460 LLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred HHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 7777775 35677777777777777777777777777777777765
No 58
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.73 E-value=3.7e-13 Score=126.45 Aligned_cols=205 Identities=16% Similarity=0.140 Sum_probs=110.0
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh-hHHH
Q 038622 122 NPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTI-TYNT 200 (587)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~ 200 (587)
..|...|..+.-++...|+++.+.+.|++....- ......|+.+...+...|.-..|+.+++........|+.. .+..
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 3455666666666666777777777776665432 2234556666666666666666666666655443222222 2222
Q ss_pred HHHH-HhccCCHHHHHHHHHHHHhC--CC--CCCHhhHHHHHHHHHhc-----------CChHHHHHHHHHHHHcCCCCC
Q 038622 201 LIST-LCKENQVEEATELARVLTSK--GI--LPDVCTFNSLIQGLCLT-----------SNFDVAMELFQEMKTKGCQPD 264 (587)
Q Consensus 201 l~~~-~~~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~ 264 (587)
.... ..+.+..++++++-.++.+. +. ...+..+..++-+|... ....++.+.+++..+.+ +.|
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~d 477 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PTD 477 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CCC
Confidence 2222 22345566666555555441 10 11223333333333211 11234555566665554 344
Q ss_pred HHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 038622 265 EFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEI 328 (587)
Q Consensus 265 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 328 (587)
+.+...+..-|...++.+.|.+..++..+.+...+...|..++.++...+++.+|+.+.+....
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~ 541 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALE 541 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 4555555555666666666666666666664455666666666666666666666666665544
No 59
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.72 E-value=4.5e-14 Score=118.69 Aligned_cols=233 Identities=15% Similarity=0.137 Sum_probs=111.6
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC----hhhHHHHH
Q 038622 22 TFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVT----NVTVNVLV 97 (587)
Q Consensus 22 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~ 97 (587)
.|..=++.++ .++.++|+..|-+|.+.+ +...++...+++.|-+.|..|.|+++.+.+.++. ..+ ..+...|+
T Consensus 38 ~Yv~GlNfLL-s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~sp-dlT~~qr~lAl~qL~ 114 (389)
T COG2956 38 DYVKGLNFLL-SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESP-DLTFEQRLLALQQLG 114 (389)
T ss_pred HHHhHHHHHh-hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCC-CCchHHHHHHHHHHH
Confidence 3333334333 445555666665555543 3344444555555555566666666555555431 111 12233445
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----cccHHHHHHHHHhc
Q 038622 98 HGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPD----VFTYNSLISGLCKL 173 (587)
Q Consensus 98 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~ 173 (587)
.-|...|-++.|..+|..+...+ .--......++..|-...++++|+++-+++...+..+. ...|..+...+...
T Consensus 115 ~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~ 193 (389)
T COG2956 115 RDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALAS 193 (389)
T ss_pred HHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhh
Confidence 55555555555555555555432 22233445555555555555555555555554432221 11223333334444
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHH
Q 038622 174 GEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELF 253 (587)
Q Consensus 174 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 253 (587)
.+.+.|..++.+....+ +.++.+-..+++.....|+++.|++.++.+.+.+..--+.+...+..+|...|+.++....+
T Consensus 194 ~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL 272 (389)
T COG2956 194 SDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFL 272 (389)
T ss_pred hhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 45555555555555444 33444444455555555555555555555554432222334444445555555555555555
Q ss_pred HHHHHc
Q 038622 254 QEMKTK 259 (587)
Q Consensus 254 ~~~~~~ 259 (587)
..+.+.
T Consensus 273 ~~~~~~ 278 (389)
T COG2956 273 RRAMET 278 (389)
T ss_pred HHHHHc
Confidence 544443
No 60
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.70 E-value=4.3e-12 Score=119.52 Aligned_cols=462 Identities=14% Similarity=0.078 Sum_probs=300.8
Q ss_pred HHhcCChhHHHHHH----HHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 038622 65 LIEEGNLDGALRIR----EQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGH 140 (587)
Q Consensus 65 ~~~~g~~~~A~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 140 (587)
++-..+.+++.-.. .++....+..+..+|..+.-++.+.|+++.+.+.|++....- -.....|..+...+...|.
T Consensus 294 ~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~ 372 (799)
T KOG4162|consen 294 LIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGS 372 (799)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhcc
Confidence 33444455554332 223333355678889999999999999999999999987642 3356678999999999999
Q ss_pred hHHHHHHHHHHHhCCCCCC-cccHHHHHHHHH-hcCCHHHHHHHHHHHHhC--C--CCCChhhHHHHHHHHhcc------
Q 038622 141 VKQALEVMDMMLQEGFDPD-VFTYNSLISGLC-KLGEVEEAVEILNQMILR--D--CSPNTITYNTLISTLCKE------ 208 (587)
Q Consensus 141 ~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~--~--~~~~~~~~~~l~~~~~~~------ 208 (587)
-..|..+++........|+ ...+......|. +.+.+++++.+-.+++.. + -...+..+..++-+|...
T Consensus 373 ~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~ 452 (799)
T KOG4162|consen 373 DSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANL 452 (799)
T ss_pred chHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCC
Confidence 9999999988876533343 333333333333 567888888887777662 1 112344455555555422
Q ss_pred -----CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHH
Q 038622 209 -----NQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEE 283 (587)
Q Consensus 209 -----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 283 (587)
....++++.+++..+.+.. |+.....+.--|...++.+.|.+...+..+.+-..+...|..++.++...+++.+
T Consensus 453 ~seR~~~h~kslqale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~ 531 (799)
T KOG4162|consen 453 KSERDALHKKSLQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKE 531 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHH
Confidence 1245677888888776533 5555555666688899999999999999998657789999999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038622 284 ALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIM 363 (587)
Q Consensus 284 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 363 (587)
|+.+.+.....- +.+......-+..-...++.++++.....+... |... ......++-....+....+.-
T Consensus 532 Al~vvd~al~E~-~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~--------we~~-~~~q~~~~~g~~~~lk~~l~l 601 (799)
T KOG4162|consen 532 ALDVVDAALEEF-GDNHVLMDGKIHIELTFNDREEALDTCIHKLAL--------WEAE-YGVQQTLDEGKLLRLKAGLHL 601 (799)
T ss_pred HHHHHHHHHHHh-hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHH--------HHhh-hhHhhhhhhhhhhhhhccccc
Confidence 999999887652 233333333344444578888888877766542 1100 001111111112222221111
Q ss_pred c--CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--C------cchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038622 364 E--GLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEP--D------IVTYGTLIGGLCKAGRVEVASKLLRSIQM 433 (587)
Q Consensus 364 ~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 433 (587)
. .......++..+.......+ ..+..-.. +.+.-..| + ...|...+..+...+..++|...+.++..
T Consensus 602 a~~q~~~a~s~sr~ls~l~a~~~--~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~ 678 (799)
T KOG4162|consen 602 ALSQPTDAISTSRYLSSLVASQL--KSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK 678 (799)
T ss_pred CcccccccchhhHHHHHHHHhhh--hhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh
Confidence 0 01111222222222111111 10000000 11111112 2 22455566777888999999988888887
Q ss_pred cCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHcCCCC-C
Q 038622 434 KGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVD--FVIEMLERGFLP-E 510 (587)
Q Consensus 434 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~--~~~~~~~~~~~p-~ 510 (587)
.. ......|+..+..+...|++++|.+.|..++..+ |.+......++..+.+.|+ ..-|.. ++..+++ ++| +
T Consensus 679 ~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~-~~la~~~~~L~dalr--~dp~n 753 (799)
T KOG4162|consen 679 ID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDHVPSMTALAELLLELGS-PRLAEKRSLLSDALR--LDPLN 753 (799)
T ss_pred cc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCC-cchHHHHHHHHHHHh--hCCCC
Confidence 53 2356778888888999999999999999999875 6667778888888888887 666666 9999998 457 8
Q ss_pred HHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCc
Q 038622 511 FSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDR 546 (587)
Q Consensus 511 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 546 (587)
+++|+.+|.++.+.|+.++|...|..+.+..+..+.
T Consensus 754 ~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 754 HEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 999999999999999999999999999988876654
No 61
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=5.6e-12 Score=109.83 Aligned_cols=293 Identities=14% Similarity=0.026 Sum_probs=180.7
Q ss_pred ccCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038622 277 SRGMLEEALKLLKEMES-SGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAA 355 (587)
Q Consensus 277 ~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 355 (587)
..++...+...+-.+.. ...+.+......++.++...|+..+|+..|++....+ |-+..........+...|+++...
T Consensus 208 ~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~ 286 (564)
T KOG1174|consen 208 FNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDS 286 (564)
T ss_pred HhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHH
Confidence 33444444444333322 2245566667777777777777777777777766543 223333333444455667777776
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038622 356 QLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKG 435 (587)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 435 (587)
.+...+.... +-....|..-+......+++..|..+-++.++.+.. +...+..-+.++...|++++|.-.|+.+...
T Consensus 287 ~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L- 363 (564)
T KOG1174|consen 287 ALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQML- 363 (564)
T ss_pred HHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhc-
Confidence 6666665431 122333333344445566777777777777765433 4556666667777777777777777777663
Q ss_pred CCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH-HHHHhCCCCHHHHHHHHHHHHHcCCCCC-HH
Q 038622 436 IVL-TPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVF-RGLCNGGGPIGEAVDFVIEMLERGFLPE-FS 512 (587)
Q Consensus 436 ~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~ 512 (587)
.| +...|..++.+|...|++.+|.-.-....+. ++.+..++..++ ..+...-.--++|.+++++.++ +.|+ ..
T Consensus 364 -ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~ 439 (564)
T KOG1174|consen 364 -APYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTP 439 (564)
T ss_pred -chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHH
Confidence 32 3467777777777777777777766666654 345555554443 2232222225777777777776 4563 55
Q ss_pred HHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCchhhhhhhHHHHHHHHHHHHhcchhhhccCch
Q 038622 513 SFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDRETSMVRGFLKIRKFQDALATFGDILDSRMPR 577 (587)
Q Consensus 513 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 577 (587)
+...++..+...|++++++.++++.+...++......++.++...+.+.+|...|..++..+|+.
T Consensus 440 AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 440 AVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred HHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 66667777777777777777777777777766667777777777777777777777777766554
No 62
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.70 E-value=4.3e-13 Score=116.54 Aligned_cols=284 Identities=14% Similarity=0.134 Sum_probs=132.6
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 038622 244 SNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIF 323 (587)
Q Consensus 244 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 323 (587)
|+|..|+++..+..+.+ +.....|..-+++--..|+.+.+-.++.++.+....++..............|+++.|..-+
T Consensus 98 G~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 98 GDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred CcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 44455544444433332 11122233333344444555555555554444321233333444444444445555555555
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHh-------hHHHHHHHHHhcCCHHHHHHHHHHH
Q 038622 324 DEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKF-------TYNSLLTYYCRAGDIKRAADIVQNM 396 (587)
Q Consensus 324 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~A~~~~~~~ 396 (587)
.++...+ |.++........+|.+.|++.....++.++.+.+.-.+.. ++..+++-....+..+.-...|+..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 5444443 3344444444455555555555555555555444332222 2333333333333333333344433
Q ss_pred HHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH
Q 038622 397 TSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDAL 476 (587)
Q Consensus 397 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 476 (587)
... ...++.....++.-+.++|+.++|.++.++..+.+..|+ ....-....-+++..=++..++..+.. +.++.
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~ 329 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQH-PEDPL 329 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhC-CCChh
Confidence 322 222344445555555556666666666655555543332 111112334455555555555555542 33444
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 038622 477 TYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVM 538 (587)
Q Consensus 477 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 538 (587)
.+..++..|.+.+. |.+|..+++.+++ ..|+...+..++.++.+.|+..+|.+..++++
T Consensus 330 L~~tLG~L~~k~~~-w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 330 LLSTLGRLALKNKL-WGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHHHhhH-HHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 55555555555555 6666666665555 34555666666666666666666666665554
No 63
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.69 E-value=1.6e-11 Score=113.36 Aligned_cols=478 Identities=14% Similarity=0.129 Sum_probs=252.8
Q ss_pred hhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 038622 21 STFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGF 100 (587)
Q Consensus 21 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 100 (587)
..+...+.+ ...+++....+..+.+.+. .+...++....+-.+...|+-++|..........+ ..+..-|..++-.+
T Consensus 9 ~lF~~~lk~-yE~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~ 85 (700)
T KOG1156|consen 9 ALFRRALKC-YETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQ 85 (700)
T ss_pred HHHHHHHHH-HHHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHH
Confidence 344444444 4577888888888888774 35566677666667777888888888888887754 45666788888777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHH
Q 038622 101 CKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAV 180 (587)
Q Consensus 101 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 180 (587)
....++++|++.|+.++..+ +.+...|.-+...-++.|+++..........+.. +.....|..++.++.-.|++..|.
T Consensus 86 R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~ 163 (700)
T KOG1156|consen 86 RSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMAL 163 (700)
T ss_pred hhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888888874 5566777777777788888888888777777752 224556777777778888888888
Q ss_pred HHHHHHHhCC-CCCChhhHHHHH------HHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHH
Q 038622 181 EILNQMILRD-CSPNTITYNTLI------STLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELF 253 (587)
Q Consensus 181 ~~~~~~~~~~-~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 253 (587)
.+++...... ..|+...+.... ......|.+++|.+.+...... +......-..-...+.+.+++++|..+|
T Consensus 164 ~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y 242 (700)
T KOG1156|consen 164 EILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVY 242 (700)
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHH
Confidence 8888877653 234444443322 2233455556665555443322 1111222223344555666666666666
Q ss_pred HHHHHcCCCCCHHhHH-HHHHHHHccCChHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHccCC-HHHHHHHHHHHHHcC
Q 038622 254 QEMKTKGCQPDEFTYN-MLIDSLCSRGMLEEAL-KLLKEMESSGCARNVVTYNTLIDGFCKLKR-IEEAEEIFDEMEIQG 330 (587)
Q Consensus 254 ~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~ 330 (587)
..++.. .||...|+ .+..++..-.+.-++. .+|....+. .|.......+.-......+ .+....++....+.|
T Consensus 243 ~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg 318 (700)
T KOG1156|consen 243 RRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKG 318 (700)
T ss_pred HHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcC
Confidence 666655 33433333 3333332111222222 333333222 1222222222111121122 222233344444444
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcc-
Q 038622 331 ISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIM---EGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIV- 406 (587)
Q Consensus 331 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~- 406 (587)
+|+ ++..+...|-... ..- ++++.+. .+..++.. ..+...- .. -+|.+.
T Consensus 319 ~p~---vf~dl~SLyk~p~---k~~-~le~Lvt~y~~~L~~~~~------------f~~~D~~------~~--E~Pttll 371 (700)
T KOG1156|consen 319 VPS---VFKDLRSLYKDPE---KVA-FLEKLVTSYQHSLSGTGM------------FNFLDDG------KQ--EPPTTLL 371 (700)
T ss_pred CCc---hhhhhHHHHhchh---HhH-HHHHHHHHHHhhcccccC------------CCccccc------cc--CCchHHH
Confidence 332 2222222221111 111 2222211 00000000 0000000 00 022222
Q ss_pred -hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 038622 407 -TYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTP-QAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRG 484 (587)
Q Consensus 407 -~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 484 (587)
++..++..+-..|+++.|..+++.+... .|+. +.|..-++.+...|.+++|...++++.+.+ .+|...-...+.-
T Consensus 372 Wt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKY 448 (700)
T KOG1156|consen 372 WTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKY 448 (700)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHH
Confidence 2334555666677777777777766663 3332 455555666777777777777777777654 3443333244444
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCCC--C---HH-HH--HHHHHHHHccCCHhHHHHHHHHHHh
Q 038622 485 LCNGGGPIGEAVDFVIEMLERGFLP--E---FS-SF--YMLAEGLVSLGKEETLVELIDMVMD 539 (587)
Q Consensus 485 ~~~~~~~~~~A~~~~~~~~~~~~~p--~---~~-~~--~~l~~~~~~~g~~~~A~~~~~~~~~ 539 (587)
..++.. .++|.+...+..+.|... + .. .| ..-|.+|.++|++..|++-+..+.+
T Consensus 449 mLrAn~-i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 449 MLRANE-IEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred HHHccc-cHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 445555 677777776666544211 1 11 11 1234566666666666665555443
No 64
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.68 E-value=1.2e-12 Score=113.92 Aligned_cols=286 Identities=14% Similarity=0.094 Sum_probs=194.8
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHH
Q 038622 208 ENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKL 287 (587)
Q Consensus 208 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 287 (587)
.|+|.+|+.+..+..+.+.. ....|..-+++....||.+.+-.++.++.+..-.++........+.....|+...|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 57777777777776665433 23344445556666677777777777776652234445555666667777777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHH
Q 038622 288 LKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNS-------VTYNTLIDGLCKSRRVEDAAQLMDQ 360 (587)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~ 360 (587)
+.++...+ +..+.+.....++|.+.|++.....++..+.+.+.-.++ .+|..++.-....+..+.-...|+.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 77777665 566667777777777777777777777777776644333 2444444444444555555556666
Q ss_pred HHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 038622 361 MIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTP 440 (587)
Q Consensus 361 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 440 (587)
.... .+.++..-..++.-+.+.|+.++|.++.++..+.+.+|+ ....-.+.+-++...-++..++..+..+. ++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~-~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPE-DP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCC-Ch
Confidence 5543 344566666777778888888888888888887765554 12222345667777777777777766333 56
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 038622 441 QAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLE 504 (587)
Q Consensus 441 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 504 (587)
..+..++..|.+.+.|.+|...|+.+++. .|+..++..++.++.+.|+ ..+|.+..++.+.
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~-~~~A~~~r~e~L~ 389 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGE-PEEAEQVRREALL 389 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCC-hHHHHHHHHHHHH
Confidence 77888888888888888888888888774 6788888888888888888 8888888888774
No 65
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.66 E-value=3e-14 Score=119.83 Aligned_cols=237 Identities=12% Similarity=0.006 Sum_probs=201.5
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 038622 301 VTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYY 380 (587)
Q Consensus 301 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 380 (587)
.--..++.+|.+.|.+.+|.+.++..+++ .|.+.+|..+.++|.+..++..|+.++.+-++. .+.+..........+
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHH
Confidence 33467899999999999999999998876 577788999999999999999999999998885 344555666777888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHH
Q 038622 381 CRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAM 460 (587)
Q Consensus 381 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 460 (587)
...++.++|.++|+...+.... +.+....++..|.-.++++.|+.++++++..|.. +++.|++++-+|.-.++++-++
T Consensus 301 eam~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhH
Confidence 8899999999999999886433 6777777788888899999999999999999887 8999999999999999999999
Q ss_pred HHHHHHHhcCCCC--CHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 038622 461 RLFREMMEKADPP--DALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVM 538 (587)
Q Consensus 461 ~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 538 (587)
..|++++..--.| ....|..+.......|+ +.-|.+.|+-++..+ ....+++.+|+-.-.+.|+.++|+.+++.+.
T Consensus 379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD-~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGD-FNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHHHHhhccCcchhhhhhhccceeEEeccc-hHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 9999998853223 34568888888888899 999999999998753 2368899999999999999999999999999
Q ss_pred hcCCCC
Q 038622 539 DKAKFS 544 (587)
Q Consensus 539 ~~~~~~ 544 (587)
...|.-
T Consensus 457 s~~P~m 462 (478)
T KOG1129|consen 457 SVMPDM 462 (478)
T ss_pred hhCccc
Confidence 988875
No 66
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.65 E-value=3.4e-12 Score=123.24 Aligned_cols=534 Identities=13% Similarity=0.029 Sum_probs=273.5
Q ss_pred hhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCChhhHHHHHHH
Q 038622 21 STFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGC-LVTNVTVNVLVHG 99 (587)
Q Consensus 21 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~ 99 (587)
..|..|...|....++.+|.+.|+.+-+.+ +.+...+......|++..+.+.|..+.-...+... ..-...|..++-.
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y 571 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY 571 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence 456666666666666666666666666555 45556666666666666666666666433333221 0011223334444
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCCHHH
Q 038622 100 FCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPD-VFTYNSLISGLCKLGEVEE 178 (587)
Q Consensus 100 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~ 178 (587)
|...++...|...|+..++.. |.|...|..++.+|.+.|++..|.++|.++... .|+ ...-......-+..|.+.+
T Consensus 572 yLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s~y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLSKYGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHhHHHHHHHHHHHHHhhhHHH
Confidence 555666666666666666553 445666666666666666666666666666553 222 2222223334455666666
Q ss_pred HHHHHHHHHhCC------CCCChhhHHHHHHHHhccCCHHHHHHHHHHHHh-------CCCCCCHhhHHHHHHHHHhcCC
Q 038622 179 AVEILNQMILRD------CSPNTITYNTLISTLCKENQVEEATELARVLTS-------KGILPDVCTFNSLIQGLCLTSN 245 (587)
Q Consensus 179 a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~ 245 (587)
++..+..+.... ...-..++..++..+...|=..++.+.++...+ .....+...|..+..+
T Consensus 649 ald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asda------ 722 (1238)
T KOG1127|consen 649 ALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDA------ 722 (1238)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHH------
Confidence 666665554321 000111222222222222222222222222211 1101111111111111
Q ss_pred hHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCCh---H---HHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-------
Q 038622 246 FDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGML---E---EALKLLKEMESSGCARNVVTYNTLIDGFCK------- 312 (587)
Q Consensus 246 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~------- 312 (587)
..+|-... .+ .|+......+..-....+.. + -+.+.+-.-.+. ..+...|..++..|.+
T Consensus 723 ----c~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl--~~~~~~WyNLGinylr~f~~l~e 794 (1238)
T KOG1127|consen 723 ----CYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSL--AIHMYPWYNLGINYLRYFLLLGE 794 (1238)
T ss_pred ----HHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHH--hhccchHHHHhHHHHHHHHHcCC
Confidence 11111111 00 11111111111111111111 1 011111111111 1123344444444433
Q ss_pred -cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 038622 313 -LKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAAD 391 (587)
Q Consensus 313 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 391 (587)
..+...|+..+.+..+.. ..+...|+.+.-+ ...|++.-|...|-+.+... +....+|..+...+....+++.|..
T Consensus 795 t~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~ 871 (1238)
T KOG1127|consen 795 TMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEP 871 (1238)
T ss_pred cchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhH
Confidence 123346777777766553 4466667666655 66678887877777766642 2355577778778888888999999
Q ss_pred HHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH--Hc--CCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038622 392 IVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQ--MK--GIVLTPQAYNPVIQALFRRKRTTEAMRLFREMM 467 (587)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 467 (587)
.|...+...+. +...|...+......|+.-++..+|..-. .. |-.+...-|..........|+.++-+...+++.
T Consensus 872 af~~~qSLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~ 950 (1238)
T KOG1127|consen 872 AFSSVQSLDPL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKIS 950 (1238)
T ss_pred HHHhhhhcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhh
Confidence 88888875433 45556555556667788888888877622 21 333344445555555566666666555444332
Q ss_pred h---------cCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---c--CCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 038622 468 E---------KADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLE---R--GFLPEFSSFYMLAEGLVSLGKEETLVEL 533 (587)
Q Consensus 468 ~---------~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~---~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 533 (587)
. .+.|.+...|...+...-+.+. +.+|.....+++. . ....++.+-...++++...|.++.|...
T Consensus 951 sAs~al~~yf~~~p~~~fAy~~~gstlEhL~e-y~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a 1029 (1238)
T KOG1127|consen 951 SASLALSYYFLGHPQLCFAYAANGSTLEHLEE-YRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKA 1029 (1238)
T ss_pred hhHHHHHHHHhcCcchhHHHHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhh
Confidence 2 1335555666666666667777 7777777777551 1 1122344556788888888988877766
Q ss_pred HHHHHhcCCCCCchhhhhhhHHHHHHHHHHHHhcchhhhccCchhh
Q 038622 534 IDMVMDKAKFSDRETSMVRGFLKIRKFQDALATFGDILDSRMPRKT 579 (587)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 579 (587)
+........+......+. .+-.|+|.++++.|++++.......+
T Consensus 1030 ~~~~~~evdEdi~gt~l~--lFfkndf~~sl~~fe~aLsis~se~d 1073 (1238)
T KOG1127|consen 1030 SWKEWMEVDEDIRGTDLT--LFFKNDFFSSLEFFEQALSISNSESD 1073 (1238)
T ss_pred hcccchhHHHHHhhhhHH--HHHHhHHHHHHHHHHHHhhhcccccc
Confidence 654332222211122232 36678888888888888776544443
No 67
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.65 E-value=2.6e-14 Score=120.21 Aligned_cols=230 Identities=16% Similarity=0.099 Sum_probs=171.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc
Q 038622 94 NVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKL 173 (587)
Q Consensus 94 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 173 (587)
..++.+|.+.|.+.+|.+.|+..++. .|-+.+|..+.++|.+..++..|+.++.+-++. ++.++.....+.+.+...
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 56777888888888888888887776 566777888888888888888888888777765 444566666677777788
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHH
Q 038622 174 GEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELF 253 (587)
Q Consensus 174 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 253 (587)
++.++|.++|+.+.+.. +.+.++...++..|.-.++++-|+..|++++..|+. ++..|+.+.-+|.-.++++.++.-|
T Consensus 304 ~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred HhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHH
Confidence 88888888888877765 556666667777777778888888888888887766 7777777777787788888888877
Q ss_pred HHHHHcCCCCC--HHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 038622 254 QEMKTKGCQPD--EFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQ 329 (587)
Q Consensus 254 ~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 329 (587)
++....--.|+ ...|..+.......|++..|.+.|+-++..+ +.....++.++-.-.+.|++++|..+++.....
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 77766543343 4567777777777788888888887777665 455667777777777778888887777776554
No 68
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.2e-12 Score=118.30 Aligned_cols=236 Identities=15% Similarity=0.117 Sum_probs=170.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHh-------hHHH
Q 038622 303 YNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKF-------TYNS 375 (587)
Q Consensus 303 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~ 375 (587)
...++++..+..++..|++.+....... .+..-++....+|...|.+..+.......++.|.. ... .+..
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 4567777778888888888888887764 45556666777888888888887777777665432 111 2223
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC
Q 038622 376 LLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKR 455 (587)
Q Consensus 376 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 455 (587)
++.++...++++.++..|++.....-.|+ ...+....+++.+..+...-.++.. ...-..-+..+++.|+
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~---------~ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPD---------LLSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHH---------HHHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccC
Confidence 44466677888999999988766422222 2333455566666665554433332 2233344788899999
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHH
Q 038622 456 TTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELI 534 (587)
Q Consensus 456 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 534 (587)
+..|++.|.+++..+ |.|...|.....++...|. +..|++-.+..++. .| ....|..-+.++..+.+|++|.+.|
T Consensus 374 y~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~-~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay 449 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGE-YPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAY 449 (539)
T ss_pred HHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhh-HHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999986 7888889899989999999 99999999999984 56 5788888899999999999999999
Q ss_pred HHHHhcCCCCCc-hhhhhhhHH
Q 038622 535 DMVMDKAKFSDR-ETSMVRGFL 555 (587)
Q Consensus 535 ~~~~~~~~~~~~-~~~~~~~~~ 555 (587)
.++++.+|.... ...+.+|.-
T Consensus 450 ~eale~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 450 QEALELDPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHhcCchhHHHHHHHHHHHH
Confidence 999999987733 344444333
No 69
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=7.5e-11 Score=107.89 Aligned_cols=454 Identities=14% Similarity=0.100 Sum_probs=267.0
Q ss_pred HHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 038622 25 ILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEG 104 (587)
Q Consensus 25 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 104 (587)
+=++-+...|++++|.+....++..+ |.+...+..=+.++++.+.|++|+.+.+.-... ......+..-+.+..+.+
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLN 93 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcc
Confidence 33566677899999999999999877 778889999999999999999999655443221 112222234555667899
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHH-HHhcCCHHHHHHHH
Q 038622 105 RIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISG-LCKLGEVEEAVEIL 183 (587)
Q Consensus 105 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~ 183 (587)
..++|+..++-.. +.+..+...-.+.+.+.|++++|..+|+.+.+.+.+ +.. ..+.+ +...+---.+. +.
T Consensus 94 k~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d~d---~~~r~nl~a~~a~l~~~-~~ 164 (652)
T KOG2376|consen 94 KLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-DQD---EERRANLLAVAAALQVQ-LL 164 (652)
T ss_pred cHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-hHH---HHHHHHHHHHHHhhhHH-HH
Confidence 9999999988322 224557778889999999999999999999876432 221 11111 11111111111 22
Q ss_pred HHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhC-------CCCCCH-------hhHHHHHHHHHhcCChHHH
Q 038622 184 NQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSK-------GILPDV-------CTFNSLIQGLCLTSNFDVA 249 (587)
Q Consensus 184 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~-------~~~~~l~~~~~~~~~~~~a 249 (587)
+..... ...+-..+...+..++..|++.+|+++++...+. +...+. ..-..+..++...|+..+|
T Consensus 165 q~v~~v-~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea 243 (652)
T KOG2376|consen 165 QSVPEV-PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA 243 (652)
T ss_pred HhccCC-CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 222221 1223344556677888999999999999888321 111111 1234456677788999999
Q ss_pred HHHHHHHHHcCCCCCHHhHH----HHHHHHHccCChH-HHHHHHHHHHHC-----------CCCCCHHHHHHHHHHHHcc
Q 038622 250 MELFQEMKTKGCQPDEFTYN----MLIDSLCSRGMLE-EALKLLKEMESS-----------GCARNVVTYNTLIDGFCKL 313 (587)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~-~a~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~ 313 (587)
..+|...++.. ++|..... .++..-....-++ .++..++..... ........-+.++..| .
T Consensus 244 ~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--t 320 (652)
T KOG2376|consen 244 SSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--T 320 (652)
T ss_pred HHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--h
Confidence 99999999876 45543322 2222211111111 112222211110 0000011111222222 2
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 038622 314 KRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLC--KSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAAD 391 (587)
Q Consensus 314 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 391 (587)
+..+.+.++....... .|.. .+..++.... +...+..+..++....+........+....++.....|+++.|.+
T Consensus 321 nk~~q~r~~~a~lp~~--~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~ 397 (652)
T KOG2376|consen 321 NKMDQVRELSASLPGM--SPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALE 397 (652)
T ss_pred hhHHHHHHHHHhCCcc--CchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 3344444443332211 2222 2223332222 222467777777777664322223455666777888899999999
Q ss_pred HHH--------HHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCCh----HhHHHHHHHHHhcCCHH
Q 038622 392 IVQ--------NMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMK--GIVLTP----QAYNPVIQALFRRKRTT 457 (587)
Q Consensus 392 ~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~----~~~~~l~~~~~~~g~~~ 457 (587)
++. .+.+.+. .+.+...+...+.+.++.+.|..++.++... .-.+.. ..+...+..-.+.|+-+
T Consensus 398 il~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ 475 (652)
T KOG2376|consen 398 ILSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEE 475 (652)
T ss_pred HHHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchH
Confidence 988 3333322 3455666777788888777777777766543 111111 23444455555679999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 038622 458 EAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEM 502 (587)
Q Consensus 458 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~ 502 (587)
+|..+++++.+.. ++|..+...++.+|+... .+.|..+-+.+
T Consensus 476 ea~s~leel~k~n-~~d~~~l~~lV~a~~~~d--~eka~~l~k~L 517 (652)
T KOG2376|consen 476 EASSLLEELVKFN-PNDTDLLVQLVTAYARLD--PEKAESLSKKL 517 (652)
T ss_pred HHHHHHHHHHHhC-CchHHHHHHHHHHHHhcC--HHHHHHHhhcC
Confidence 9999999999864 788888888888887765 57777665553
No 70
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.62 E-value=7.6e-11 Score=112.17 Aligned_cols=291 Identities=17% Similarity=0.146 Sum_probs=160.7
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh-HHHHHHHHHhc---
Q 038622 63 QGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFT-YNTLVNGLCKV--- 138 (587)
Q Consensus 63 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~--- 138 (587)
..+...|++++|++.++..... +..........+..+.+.|+.++|..+++.+++.+ |+... |..+..+....
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccc
Confidence 3445556666666666554433 23334445555566666666666666666666653 33333 33333333111
Q ss_pred --CChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHH-HHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHH
Q 038622 139 --GHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVE-EAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEAT 215 (587)
Q Consensus 139 --~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 215 (587)
.+.+...++|+++... -|...+...+.-.+..-..+. .+..++...+..|+| .++..+-..|.......-..
T Consensus 89 ~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred ccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHH
Confidence 2345555566655543 233333222222222211222 233344444555532 33444444444333333333
Q ss_pred HHHHHHHhC--------------CCCCCH--hhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccC
Q 038622 216 ELARVLTSK--------------GILPDV--CTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRG 279 (587)
Q Consensus 216 ~~~~~~~~~--------------~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 279 (587)
+++..+... .-+|.. .++..+...|...|++++|+++.++.+... |..+..|..-++.+-..|
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G 242 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCC
Confidence 343333221 012233 234555667778888888888888888773 334677777888888888
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH--------HHHHHHHHHHHhcCCH
Q 038622 280 MLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNS--------VTYNTLIDGLCKSRRV 351 (587)
Q Consensus 280 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~ 351 (587)
++.+|.+.++.+...+ ..|...-+..+..+.+.|++++|.+++......+..|.. +.....+.+|.+.|++
T Consensus 243 ~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~ 321 (517)
T PF12569_consen 243 DLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDY 321 (517)
T ss_pred CHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhH
Confidence 8888888888887776 445555566677777888888888888777655432221 1223455677888888
Q ss_pred HHHHHHHHHHHH
Q 038622 352 EDAAQLMDQMIM 363 (587)
Q Consensus 352 ~~A~~~~~~~~~ 363 (587)
..|++.|..+.+
T Consensus 322 ~~ALk~~~~v~k 333 (517)
T PF12569_consen 322 GLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHH
Confidence 888877776665
No 71
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=1e-10 Score=107.01 Aligned_cols=460 Identities=13% Similarity=0.086 Sum_probs=272.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 038622 57 TFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLC 136 (587)
Q Consensus 57 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 136 (587)
....=++.+..+|++++|.+...+++..+ |.+..++..-+.++.+.+++++|+.+.+.-... ..+..-+..-+.+..
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHH
Confidence 33444566778999999999999999886 778888888888999999999999766543321 111111123344555
Q ss_pred hcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHhccCCHHHHH
Q 038622 137 KVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNT-ITYNTLISTLCKENQVEEAT 215 (587)
Q Consensus 137 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~ 215 (587)
+.+..++|+..++.... .+..+...-+..+.+.|++++|..+|+.+.+.+.+... .....++..-. ...+.
T Consensus 91 rlnk~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~~ 162 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQVQ 162 (652)
T ss_pred HcccHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhHH
Confidence 88999999999983322 23446677788899999999999999999887533211 11122211111 01111
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcC-------CCC--CH-----HhHHHHHHHHHccCCh
Q 038622 216 ELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKG-------CQP--DE-----FTYNMLIDSLCSRGML 281 (587)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~--~~-----~~~~~l~~~~~~~~~~ 281 (587)
+.+..... ...+-..+....-.+...|++.+|+++++...+.+ -.. +. ..-..++.++...|+.
T Consensus 163 -~~q~v~~v-~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt 240 (652)
T KOG2376|consen 163 -LLQSVPEV-PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT 240 (652)
T ss_pred -HHHhccCC-CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence 12211111 11122223334445678899999999999883311 011 11 1234556677789999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHccCCH-H-HHHHHHHHHHHcCC---------CCCHHHHHHHHHHHH
Q 038622 282 EEALKLLKEMESSGCARNVVTY----NTLIDGFCKLKRI-E-EAEEIFDEMEIQGI---------SRNSVTYNTLIDGLC 346 (587)
Q Consensus 282 ~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~-~-~a~~~~~~~~~~~~---------~~~~~~~~~l~~~~~ 346 (587)
.+|..+|..+++.. ++|.... +.++.+ ....++ + .++..++....... ..-..++...+-...
T Consensus 241 ~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l 318 (652)
T KOG2376|consen 241 AEASSIYVDIIKRN-PADEPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLAL 318 (652)
T ss_pred HHHHHHHHHHHHhc-CCCchHHHHHhcchhhh-ccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999876 3444322 222221 111111 1 12222222111100 000111111111112
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHH-H-HhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHH
Q 038622 347 KSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTY-Y-CRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVA 424 (587)
Q Consensus 347 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 424 (587)
..+..+.+.++...... ..|.. .+..++.. . .+...+..+..++.......+.....+...++......|+++.|
T Consensus 319 ~tnk~~q~r~~~a~lp~--~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A 395 (652)
T KOG2376|consen 319 FTNKMDQVRELSASLPG--MSPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVA 395 (652)
T ss_pred HhhhHHHHHHHHHhCCc--cCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHH
Confidence 22333444443333221 12222 23333332 2 22235777888888777654333345666777888899999999
Q ss_pred HHHHH--------HHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCCCHHHHHHHHHHHHhCCC
Q 038622 425 SKLLR--------SIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEK------ADPPDALTYKHVFRGLCNGGG 490 (587)
Q Consensus 425 ~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~ 490 (587)
++++. .+.+. .-.+.+...+...+.+.++.+.|..++.+++.. +-..-...+...+..-.+.|+
T Consensus 396 ~~il~~~~~~~~ss~~~~--~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~ 473 (652)
T KOG2376|consen 396 LEILSLFLESWKSSILEA--KHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGN 473 (652)
T ss_pred HHHHHHHhhhhhhhhhhh--ccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCc
Confidence 99999 44443 334566677788888888888888888887762 111112233334444456687
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 038622 491 PIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMD 539 (587)
Q Consensus 491 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 539 (587)
-++|...++++++.+ +++.++...+..+|.+. +.+.|..+-+.+.-
T Consensus 474 -~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~p 519 (652)
T KOG2376|consen 474 -EEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKLPP 519 (652)
T ss_pred -hHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcCCC
Confidence 999999999999853 45899999999999888 58889888777543
No 72
>PRK12370 invasion protein regulator; Provisional
Probab=99.60 E-value=6e-13 Score=131.37 Aligned_cols=269 Identities=10% Similarity=0.066 Sum_probs=199.6
Q ss_pred CCCHhhHHHHHHHHHH-----cCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHh---------cCChhHHHHHHHHHH
Q 038622 17 KPDVSTFNILIKALCK-----AHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIE---------EGNLDGALRIREQMV 82 (587)
Q Consensus 17 ~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~ 82 (587)
+.+...|...+++... .+++++|+..|+++.+.. |.++..|..++.++.. .+++++|...+++++
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 5566667666665322 356999999999999886 5667777777765542 345899999999999
Q ss_pred HcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCccc
Q 038622 83 EHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFT 162 (587)
Q Consensus 83 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 162 (587)
+.+ |.+...+..++.++...|++++|...|+++++.+ |.+...+..++..+...|++++|+..++++.+.++. +...
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~ 408 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAA 408 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-Chhh
Confidence 987 6688889899999999999999999999999985 556778899999999999999999999999987422 2333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 038622 163 YNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCL 242 (587)
Q Consensus 163 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 242 (587)
+..++..+...|++++|+..++++.....+.++..+..++.++...|++++|...+.++.... +.+......+...+..
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhc
Confidence 444555677789999999999998876434456667888999999999999999999876652 2234445556666677
Q ss_pred cCChHHHHHHHHHHHHcC-CCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCC
Q 038622 243 TSNFDVAMELFQEMKTKG-CQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSG 295 (587)
Q Consensus 243 ~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 295 (587)
.| +.+...++.+.+.. ..+.. .......+.-.|+.+.+..+ +++.+.+
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNN--PGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcC--chHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 77 47777777766531 11211 22244555666777777666 7776653
No 73
>PRK12370 invasion protein regulator; Provisional
Probab=99.58 E-value=2.9e-12 Score=126.62 Aligned_cols=270 Identities=14% Similarity=0.061 Sum_probs=197.2
Q ss_pred CCCHHHHHHHHHHHH-----hcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHh---------cCCHHHHHHHHHHHH
Q 038622 52 APDERTFTTLMQGLI-----EEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCK---------EGRIEDALSFIQEMV 117 (587)
Q Consensus 52 ~~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~ 117 (587)
+.+...|...+++.. ..+++++|+..|+++++.+ |.+...+..++.++.. .+++++|...+++++
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 566776666666532 2345789999999999986 5566777777766542 245899999999999
Q ss_pred HCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh
Q 038622 118 SEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTIT 197 (587)
Q Consensus 118 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 197 (587)
+.+ |.+..++..++.++...|++++|...|+++.+.+ +.+...+..++..+...|++++|+..++++...+ |.+...
T Consensus 332 ~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~ 408 (553)
T PRK12370 332 ELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAA 408 (553)
T ss_pred hcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhh
Confidence 985 6677888899999999999999999999999974 3356778889999999999999999999999886 334444
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHc
Q 038622 198 YNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCS 277 (587)
Q Consensus 198 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 277 (587)
+..++..+...|++++|...++++.....+.++..+..+..++...|++++|...+.++.... +.+......+...+..
T Consensus 409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 409 GITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhc
Confidence 445555677789999999999998876433355567778888999999999999999876652 3334555666667777
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 038622 278 RGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQG 330 (587)
Q Consensus 278 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 330 (587)
.| +.|...++.+.+... ............+.-.|+.+.+... +++.+.+
T Consensus 488 ~g--~~a~~~l~~ll~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NS--ERALPTIREFLESEQ-RIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cH--HHHHHHHHHHHHHhh-HhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 77 477777777655321 1111112244455666777766655 7776543
No 74
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.9e-11 Score=110.63 Aligned_cols=443 Identities=12% Similarity=0.038 Sum_probs=229.1
Q ss_pred HHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 038622 27 IKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRI 106 (587)
Q Consensus 27 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 106 (587)
.++.+..|+++.|+..|.+++..+ |+|...|..-..+|+..|+|++|++--.+.++.+ |.-+..|...+.++.-.|++
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhcccH
Confidence 466788999999999999999887 7788889999999999999999999998888876 55667899999999999999
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC-CHHHHHHHHHH
Q 038622 107 EDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLG-EVEEAVEILNQ 185 (587)
Q Consensus 107 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~ 185 (587)
++|+..|.+-++.. +.+...+..+..++. ...+. +.. ..++..+..+...-...+ -.+.+.....+
T Consensus 87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~----~~~~~-----~~~---~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~ 153 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-PSNKQLKTGLAQAYL----EDYAA-----DQL---FTKPYFHEKLANLPLTNYSLSDPAYVKILE 153 (539)
T ss_pred HHHHHHHHHHhhcC-CchHHHHHhHHHhhh----HHHHh-----hhh---ccCcHHHHHhhcChhhhhhhccHHHHHHHH
Confidence 99999999998873 444455666666651 11111 111 112222222211100000 00111111111
Q ss_pred HHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHH-----HHHhC-------CCCCCHhhHHHHHHHHHhcCChHHHHHHH
Q 038622 186 MILRDCSPNTITYNTLISTLCKENQVEEATELAR-----VLTSK-------GILPDVCTFNSLIQGLCLTSNFDVAMELF 253 (587)
Q Consensus 186 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-----~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 253 (587)
....+ +.+.. .+........+...+. ..... +..|. .......-..++..+-.+
T Consensus 154 ~~~~~-p~~l~-------~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~----~~~~~~~~~~~d~~ee~~-- 219 (539)
T KOG0548|consen 154 IIQKN-PTSLK-------LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPC----KQEHNGFPIIEDNTEERR-- 219 (539)
T ss_pred HhhcC-cHhhh-------cccccHHHHHHHHHHhcCccccccccccccCCCCCCcc----cccCCCCCccchhHHHHH--
Confidence 11111 10100 0100000111111000 00000 00110 000000000000000000
Q ss_pred HHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC
Q 038622 254 QEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISR 333 (587)
Q Consensus 254 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 333 (587)
. ..-..-...++....+..++..|++.+....... .+...++....+|...|.+..+........+.|. .
T Consensus 220 ---~----k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e 289 (539)
T KOG0548|consen 220 ---V----KEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-E 289 (539)
T ss_pred ---H----HHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-H
Confidence 0 0011223344555555556666666666655543 3444455555556665555555555544444331 1
Q ss_pred CHH-------HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcc
Q 038622 334 NSV-------TYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIV 406 (587)
Q Consensus 334 ~~~-------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 406 (587)
... .+..++.++.+.++++.++..|.+.+.....|+. .......+++....+...-.++.. ..
T Consensus 290 ~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~-A~ 359 (539)
T KOG0548|consen 290 LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEK-AE 359 (539)
T ss_pred HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhH-HH
Confidence 111 1122333455566777777777776654333222 122233444444444433322211 11
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 038622 407 TYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLC 486 (587)
Q Consensus 407 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 486 (587)
....-+..+.+.|++..|+..|.+++..++. |...|.+.+.+|.+.|.+..|++-.+..++.+ |+....|..-+.++.
T Consensus 360 e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~ 437 (539)
T KOG0548|consen 360 EEREKGNEAFKKGDYPEAVKHYTEAIKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALR 437 (539)
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHH
Confidence 2222355566677777777777777766533 55667777777777777777777777777653 444555555555666
Q ss_pred hCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHc
Q 038622 487 NGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVS 523 (587)
Q Consensus 487 ~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 523 (587)
...+ |+.|.+.|.++++. .| +..+...+.+++..
T Consensus 438 ~mk~-ydkAleay~eale~--dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 438 AMKE-YDKALEAYQEALEL--DPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHH-HHHHHHHHHHHHhc--CchhHHHHHHHHHHHHH
Confidence 6666 77777777777763 35 44455555555554
No 75
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.58 E-value=2.1e-10 Score=109.22 Aligned_cols=297 Identities=18% Similarity=0.185 Sum_probs=196.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHH-HHHHHH
Q 038622 93 VNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNS-LISGLC 171 (587)
Q Consensus 93 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~ 171 (587)
.......+...|++++|++.++.-.+. +..........+..+.+.|+.++|..+|..++..+ |+...|.. +..+..
T Consensus 7 lLY~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g 83 (517)
T PF12569_consen 7 LLYKNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALG 83 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHh
Confidence 334556678889999999999886654 33334566778889999999999999999999974 45444444 444432
Q ss_pred h-----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHH-HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 038622 172 K-----LGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVE-EATELARVLTSKGILPDVCTFNSLIQGLCLTSN 245 (587)
Q Consensus 172 ~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 245 (587)
. ..+.+...++|+++...- |...+...+.-.+..-..+. .+...+......|+|+ +|..+-..|.....
T Consensus 84 ~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K 158 (517)
T PF12569_consen 84 LQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEK 158 (517)
T ss_pred hhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhH
Confidence 2 235677788888887653 33333333322222222333 3445666667777653 45555445554444
Q ss_pred hHHHHHHHHHHHHc----C----------CCCCH--HhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 038622 246 FDVAMELFQEMKTK----G----------CQPDE--FTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDG 309 (587)
Q Consensus 246 ~~~a~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 309 (587)
..-..+++...... + -+|.. .++..++..|...|++++|++++++++... |..+..|..-+..
T Consensus 159 ~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~Kari 237 (517)
T PF12569_consen 159 AAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARI 237 (517)
T ss_pred HHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 44444454444321 1 12333 344667788888899999999999888875 4457778888888
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHh------h--HHHHHHHHH
Q 038622 310 FCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKF------T--YNSLLTYYC 381 (587)
Q Consensus 310 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------~--~~~l~~~~~ 381 (587)
+-..|++.+|.+.++.+...+ ..|..+-+..+..+.+.|+.++|.+.+......+..|... . ....+.+|.
T Consensus 238 lKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~ 316 (517)
T PF12569_consen 238 LKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYL 316 (517)
T ss_pred HHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHH
Confidence 889999999999998888775 4466666667778888899999998888887655433221 1 234467788
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 038622 382 RAGDIKRAADIVQNMTSN 399 (587)
Q Consensus 382 ~~~~~~~A~~~~~~~~~~ 399 (587)
+.|++..|++.|..+.+.
T Consensus 317 r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 317 RQGDYGLALKRFHAVLKH 334 (517)
T ss_pred HHhhHHHHHHHHHHHHHH
Confidence 888888888887776653
No 76
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.57 E-value=3.9e-12 Score=112.61 Aligned_cols=199 Identities=13% Similarity=0.130 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHH
Q 038622 336 VTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGL 415 (587)
Q Consensus 336 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 415 (587)
..+..++..+...|++++|...+++++... +.+...+..++..+...|++++|...+++..+.... +...+..++..+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHH
Confidence 344445555555555555555555555432 123344445555555555555555555555543222 333444555555
Q ss_pred HhcCChHHHHHHHHHHHHcCC-CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHH
Q 038622 416 CKAGRVEVASKLLRSIQMKGI-VLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGE 494 (587)
Q Consensus 416 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 494 (587)
...|++++|.+.++++..... ......+..++.++...|++++|...+.++++.. +.+...+..++..+...|+ +++
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~-~~~ 187 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQ-YKD 187 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCC-HHH
Confidence 555555555555555554311 1122344555555666666666666666665542 3334445555555555555 666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 038622 495 AVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMD 539 (587)
Q Consensus 495 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 539 (587)
|...++++++. .++++..+..++.++...|+.++|..+.+.+..
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 66666665553 122445555555555666666666665555444
No 77
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.56 E-value=2.4e-12 Score=113.89 Aligned_cols=200 Identities=16% Similarity=0.096 Sum_probs=167.5
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHH
Q 038622 369 DKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQ 448 (587)
Q Consensus 369 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 448 (587)
....+..++..+...|++++|...+++++...+. +...+..++..+...|++++|.+.+++..+..+. +...+..++.
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHH
Confidence 3556778889999999999999999999876432 5667888999999999999999999999986443 5678889999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCC
Q 038622 449 ALFRRKRTTEAMRLFREMMEKAD-PPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGK 526 (587)
Q Consensus 449 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 526 (587)
.+...|++++|.+.++++++... +.....+..++..+...|+ +++|...+.++++. .| ++..+..++.++...|+
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~ 184 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGD-FDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQ 184 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCC
Confidence 99999999999999999997522 2344566778888899999 99999999999984 45 67888999999999999
Q ss_pred HhHHHHHHHHHHhcCCCC-CchhhhhhhHHHHHHHHHHHHhcchhhhc
Q 038622 527 EETLVELIDMVMDKAKFS-DRETSMVRGFLKIRKFQDALATFGDILDS 573 (587)
Q Consensus 527 ~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 573 (587)
+++|...++++.+..|.. ..+..++..+...|+.++|....+.+...
T Consensus 185 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 185 YKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 999999999999886654 33566778888999999999887776554
No 78
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.54 E-value=2e-10 Score=111.30 Aligned_cols=276 Identities=13% Similarity=0.020 Sum_probs=127.3
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 038622 241 CLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAE 320 (587)
Q Consensus 241 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 320 (587)
...|++.-+...|-+.+... +.+..+|..++..+....+++.|...|....... |.+...|...+......|+.-++.
T Consensus 827 sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~ 904 (1238)
T KOG1127|consen 827 SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERL 904 (1238)
T ss_pred hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHH
Confidence 33344444444444433332 3344555555555566666666666666665554 444444544444444555555555
Q ss_pred HHHHHH--HHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---------CCCCCHhhHHHHHHHHHhcCCHH
Q 038622 321 EIFDEM--EIQ--GISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIME---------GLKPDKFTYNSLLTYYCRAGDIK 387 (587)
Q Consensus 321 ~~~~~~--~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~~~~~ 387 (587)
.+|..- ... |--+....|.........+|+.++-+...+++... +.+.+...|...+...-+.+.+.
T Consensus 905 ~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~ 984 (1238)
T KOG1127|consen 905 ILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYR 984 (1238)
T ss_pred HHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHH
Confidence 555441 111 11223333333334444555544433333322211 22333445555555555666666
Q ss_pred HHHHHHHHHHHC-CCCCCcc----hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHH
Q 038622 388 RAADIVQNMTSN-GCEPDIV----TYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRL 462 (587)
Q Consensus 388 ~A~~~~~~~~~~-~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 462 (587)
.|.....+.+.. ...-+.. .-..+++.+...|.++.|..-+..... ..+.... ..--..+-.|+++++.+.
T Consensus 985 ~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~---evdEdi~-gt~l~lFfkndf~~sl~~ 1060 (1238)
T KOG1127|consen 985 AALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWM---EVDEDIR-GTDLTLFFKNDFFSSLEF 1060 (1238)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccch---hHHHHHh-hhhHHHHHHhHHHHHHHH
Confidence 666655554321 0001111 222345555666666655443322111 0011111 111112445677777777
Q ss_pred HHHHHhc-CCCCCH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc
Q 038622 463 FREMMEK-ADPPDA-LTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSL 524 (587)
Q Consensus 463 ~~~~~~~-~~~~~~-~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 524 (587)
|++++.. +...+. .....++......++ -+.|...+-+..... +|+......|+.++.-.
T Consensus 1061 fe~aLsis~se~d~vvLl~kva~~~g~~~~-k~~A~~lLfe~~~ls-~~~~~sll~L~A~~ild 1122 (1238)
T KOG1127|consen 1061 FEQALSISNSESDKVVLLCKVAVCMGLARQ-KNDAQFLLFEVKSLS-KVQASSLLPLPAVYILD 1122 (1238)
T ss_pred HHHHhhhcccccchhhhhHHHHHHHhhccc-chHHHHHHHHHHHhC-ccchhhHHHHHHHHHHh
Confidence 7777763 112222 223334444455555 666776666666532 34555555555554433
No 79
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.54 E-value=1.7e-11 Score=98.63 Aligned_cols=200 Identities=17% Similarity=0.089 Sum_probs=160.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 038622 56 RTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGL 135 (587)
Q Consensus 56 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 135 (587)
.+...++..|...|++..|..-++++++.+ |.+..+|..++..|.+.|+.+.|.+.|+++++.. +.+..+.+..+..+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHH
Confidence 356777888889999999999999998886 6677888888888889999999999999988874 55667888888888
Q ss_pred HhcCChHHHHHHHHHHHhCCCCC-CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHH
Q 038622 136 CKVGHVKQALEVMDMMLQEGFDP-DVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEA 214 (587)
Q Consensus 136 ~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 214 (587)
|.+|++++|...|+++.....-+ -..++..++-+..+.|+.+.|...|++.+..+ +..+.....+.......|++-.|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHH
Confidence 88999999999998888752212 25678888888888899999999998888886 44667778888888888888888
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038622 215 TELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTK 259 (587)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 259 (587)
...++.....+. ++.......++.-...|+.+.+.++=..+.+.
T Consensus 193 r~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 193 RLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred HHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 888888877755 67777777777777888888877766666554
No 80
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.53 E-value=1.5e-10 Score=98.58 Aligned_cols=305 Identities=13% Similarity=0.086 Sum_probs=192.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHH
Q 038622 232 TFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVV-TYNTLIDGF 310 (587)
Q Consensus 232 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~ 310 (587)
-...+...+...|++..|+..|..+++.+ +.+-.++..-+..|...|+..-|+.-+.+.++. +||.. +...-+..+
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhh
Confidence 34445555555666666666666655542 223344444555566666666666666665554 23332 223334455
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCCH--------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHH
Q 038622 311 CKLKRIEEAEEIFDEMEIQGISRNS--------------VTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSL 376 (587)
Q Consensus 311 ~~~~~~~~a~~~~~~~~~~~~~~~~--------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 376 (587)
.+.|.+++|..-|+.++......+. ......+..+...|+...|+.....+++-. +-|...+..-
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~R 195 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQAR 195 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHH
Confidence 5666666666666665554311110 111222334556688888888888887742 2366667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHh----HHHH------
Q 038622 377 LTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQA----YNPV------ 446 (587)
Q Consensus 377 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l------ 446 (587)
..+|...|++..|+.-++.+.+... .+...+..+...+...|+.+.++...++.++. .|+... |..+
T Consensus 196 akc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~ 272 (504)
T KOG0624|consen 196 AKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKS 272 (504)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHH
Confidence 7888888888888888877766532 35667777778888888888888888888773 444422 1111
Q ss_pred ---HHHHHhcCCHHHHHHHHHHHHhcCCCCCHH---HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 038622 447 ---IQALFRRKRTTEAMRLFREMMEKADPPDAL---TYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAE 519 (587)
Q Consensus 447 ---~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 519 (587)
+......++|.++++..++.++........ .+..+-.++...++ +.+|++...++++ +.| |..++...+.
T Consensus 273 les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~-~~eAiqqC~evL~--~d~~dv~~l~dRAe 349 (504)
T KOG0624|consen 273 LESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQ-FGEAIQQCKEVLD--IDPDDVQVLCDRAE 349 (504)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCC-HHHHHHHHHHHHh--cCchHHHHHHHHHH
Confidence 223445678888888888888864221122 22223334455666 9999999999998 567 5888888999
Q ss_pred HHHccCCHhHHHHHHHHHHhcCCCCCc
Q 038622 520 GLVSLGKEETLVELIDMVMDKAKFSDR 546 (587)
Q Consensus 520 ~~~~~g~~~~A~~~~~~~~~~~~~~~~ 546 (587)
+|.-...|++|+.-|+++.+.++.+..
T Consensus 350 A~l~dE~YD~AI~dye~A~e~n~sn~~ 376 (504)
T KOG0624|consen 350 AYLGDEMYDDAIHDYEKALELNESNTR 376 (504)
T ss_pred HHhhhHHHHHHHHHHHHHHhcCcccHH
Confidence 999999999999999999999987743
No 81
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.52 E-value=2e-10 Score=110.04 Aligned_cols=254 Identities=18% Similarity=0.217 Sum_probs=171.5
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 038622 6 TAHADMVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHG 85 (587)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 85 (587)
.++..+...|+.||.++|..+|..|+..|+.+.|- +|..|.-.+.+.+...+..++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 46778888999999999999999999999999998 9999988888888889999999888888887775
Q ss_pred CCCChhhHHHHHHHHHhcCCHHH---HHHHHHHHHH----CCC-CCChh-------------hHHHHHHHHHhcCChHHH
Q 038622 86 CLVTNVTVNVLVHGFCKEGRIED---ALSFIQEMVS----EGF-NPDQF-------------TYNTLVNGLCKVGHVKQA 144 (587)
Q Consensus 86 ~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~----~~~-~~~~~-------------~~~~l~~~~~~~~~~~~a 144 (587)
.|...+|..|..+|...||... ..+.+..+.. .|+ .|... .-...+....-.|-++.+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql 158 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL 158 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence 5678899999999999998654 2222222211 111 01010 011222333334445555
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 038622 145 LEVMDMMLQEGFDPDVFTYNSLISGLCK-LGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTS 223 (587)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 223 (587)
++++..+....- +. .....++-+.. ...+++-..+.....+ .+++.++..++.+....|+.+.|..++..|.+
T Consensus 159 lkll~~~Pvsa~--~~-p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke 232 (1088)
T KOG4318|consen 159 LKLLAKVPVSAW--NA-PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKE 232 (1088)
T ss_pred HHHHhhCCcccc--cc-hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 555544332110 10 11111222222 2233443333333332 46888888888888888999999999999999
Q ss_pred CCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCC
Q 038622 224 KGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGM 280 (587)
Q Consensus 224 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 280 (587)
.|++.+.+.|..++-+ .++...+..+..-|...|+.|+..|+...+..+...|.
T Consensus 233 ~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 233 KGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred cCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 8888888877777644 77777888888888888888888888777666666443
No 82
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.52 E-value=3.2e-11 Score=97.08 Aligned_cols=203 Identities=13% Similarity=0.079 Sum_probs=135.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHH
Q 038622 337 TYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLC 416 (587)
Q Consensus 337 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 416 (587)
+...+...|...|++..|..-++++++.. +.+..++..+...|...|+.+.|.+.|+++++..+. +..+.+..+..++
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence 34455666777777777777777777642 223446666677777777777777777777765433 5666777777777
Q ss_pred hcCChHHHHHHHHHHHHcCCCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHH
Q 038622 417 KAGRVEVASKLLRSIQMKGIVL-TPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEA 495 (587)
Q Consensus 417 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A 495 (587)
..|++++|...|+++.....-+ ...+|.+++.+..+.|+++.|...|++.++.+ +..+.....+.......|+ +-.|
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~-y~~A 192 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGD-YAPA 192 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhccc-chHH
Confidence 7777777777777777652111 23566777777777777777777777777764 4455556666777777777 7777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC
Q 038622 496 VDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS 544 (587)
Q Consensus 496 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 544 (587)
..++++....+ .+..+.+...+++-...|+.+.|.++=..+....|..
T Consensus 193 r~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s 240 (250)
T COG3063 193 RLYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYS 240 (250)
T ss_pred HHHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 77777776654 3566666666666667777777777777766666655
No 83
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.50 E-value=1.3e-10 Score=99.11 Aligned_cols=309 Identities=14% Similarity=0.104 Sum_probs=239.7
Q ss_pred CCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH-HHHHH
Q 038622 263 PDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSV-TYNTL 341 (587)
Q Consensus 263 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l 341 (587)
.+..-...++..+...|++..|+..|..+.+.+ |.+..++..-+..|...|+-..|+.-+.+.++. .|+-. .-..-
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 344556667888888999999999999999865 556667777788899999999999999988876 45532 23334
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCH--hh------------HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcch
Q 038622 342 IDGLCKSRRVEDAAQLMDQMIMEGLKPDK--FT------------YNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVT 407 (587)
Q Consensus 342 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~------------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 407 (587)
...+.+.|.++.|..-|+..++....... .. ....+..+...||...|+.....+++.. ..+...
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l 191 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASL 191 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHH
Confidence 56788999999999999999986332111 11 2223445667899999999999999863 347888
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH-HH---HHH--
Q 038622 408 YGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDAL-TY---KHV-- 481 (587)
Q Consensus 408 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~---~~l-- 481 (587)
+..-+.+|...|++..|+.-++.+.+.... +.+.+..+...+...|+.+.++...++.++. .||.. .| ..+
T Consensus 192 ~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkK 268 (504)
T KOG0624|consen 192 RQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKK 268 (504)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHH
Confidence 888899999999999999999988886433 6678889999999999999999999999986 45543 22 111
Q ss_pred -H------HHHHhCCCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC-Cchh
Q 038622 482 -F------RGLCNGGGPIGEAVDFVIEMLERGFLPE-----FSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS-DRET 548 (587)
Q Consensus 482 -~------~~~~~~~~~~~~A~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~ 548 (587)
. ....+.+. |.++++..++.++. .|. ...+..+..++...|++.+|++..+++++..|++ ++..
T Consensus 269 v~K~les~e~~ie~~~-~t~cle~ge~vlk~--ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~ 345 (504)
T KOG0624|consen 269 VVKSLESAEQAIEEKH-WTECLEAGEKVLKN--EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLC 345 (504)
T ss_pred HHHHHHHHHHHHhhhh-HHHHHHHHHHHHhc--CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHH
Confidence 1 12345566 88888888888874 353 2344567788999999999999999999999986 5688
Q ss_pred hhhhhHHHHHHHHHHHHhcchhhhccCchhhhh
Q 038622 549 SMVRGFLKIRKFQDALATFGDILDSRMPRKTFR 581 (587)
Q Consensus 549 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 581 (587)
.-+.+|+-...|+.|+.-|+++.+-++....++
T Consensus 346 dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~r 378 (504)
T KOG0624|consen 346 DRAEAYLGDEMYDDAIHDYEKALELNESNTRAR 378 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHH
Confidence 888999999999999999999999887766543
No 84
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.50 E-value=4.2e-09 Score=100.34 Aligned_cols=491 Identities=14% Similarity=0.088 Sum_probs=257.3
Q ss_pred CCCHhhHHHHHH--HHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc--------CC
Q 038622 17 KPDVSTFNILIK--ALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEH--------GC 86 (587)
Q Consensus 17 ~~~~~~~~~l~~--~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~ 86 (587)
.=|.++-.++++ .|..-|+++.|.+..+.+. +..+|..+++.+.+..++|-|.-.+-.|... ..
T Consensus 723 ~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~ 796 (1416)
T KOG3617|consen 723 NCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQ 796 (1416)
T ss_pred ccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHH
Confidence 346666666663 4677888888888777765 3457888888888888877776665554321 01
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHH
Q 038622 87 LVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSL 166 (587)
Q Consensus 87 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 166 (587)
+.+...-...+......|..++|+.+|++..+. ..+-..|-..|.+++|.++-+.--+. . -..||...
T Consensus 797 q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRi--H-Lr~Tyy~y 864 (1416)
T KOG3617|consen 797 QNGEEDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRI--H-LRNTYYNY 864 (1416)
T ss_pred hCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccce--e-hhhhHHHH
Confidence 111122333444556778888888888776543 34445566677777777765542221 1 12456666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC----------C---------CCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCC
Q 038622 167 ISGLCKLGEVEEAVEILNQMILR----------D---------CSPNTITYNTLISTLCKENQVEEATELARVLTSKGIL 227 (587)
Q Consensus 167 ~~~~~~~g~~~~a~~~~~~~~~~----------~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 227 (587)
+.-+...++.+.|++.|++.-.. + -..+...|.-.+...-..|+.+.|+.+|....+
T Consensus 865 A~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---- 940 (1416)
T KOG3617|consen 865 AKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---- 940 (1416)
T ss_pred HHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----
Confidence 66666677777777777654211 0 011333444445555556666666666655443
Q ss_pred CCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHC----------CC-
Q 038622 228 PDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESS----------GC- 296 (587)
Q Consensus 228 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------~~- 296 (587)
|..+.+..+-+|+.++|-++-++ ..|....+.+++.|-..|++.+|..+|.++... +.
T Consensus 941 -----~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~ 1009 (1416)
T KOG3617|consen 941 -----YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMK 1009 (1416)
T ss_pred -----hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 23333334444444444443332 114444555555555555555555555443221 00
Q ss_pred -----------CCCHH-----------HHHHHHHHHHccCCHHHHHHHHHH--------HHH--cCCCCCHHHHHHHHHH
Q 038622 297 -----------ARNVV-----------TYNTLIDGFCKLKRIEEAEEIFDE--------MEI--QGISRNSVTYNTLIDG 344 (587)
Q Consensus 297 -----------~~~~~-----------~~~~l~~~~~~~~~~~~a~~~~~~--------~~~--~~~~~~~~~~~~l~~~ 344 (587)
+.+.. -.......|-+.|.+.+|+++--+ ++. .....|+...+.....
T Consensus 1010 d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadF 1089 (1416)
T KOG3617|consen 1010 DRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADF 1089 (1416)
T ss_pred HHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 00000 011222344555555555543211 111 1223466667777777
Q ss_pred HHhcCCHHHHHHHHHHHHH----------cC----------------CCCCH----hhHHHHHHHHHhcCCHHHHHHHHH
Q 038622 345 LCKSRRVEDAAQLMDQMIM----------EG----------------LKPDK----FTYNSLLTYYCRAGDIKRAADIVQ 394 (587)
Q Consensus 345 ~~~~~~~~~A~~~~~~~~~----------~~----------------~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~ 394 (587)
+....++++|..++-...+ .+ -.|+. ..+..++..|.++|++..|.+-|.
T Consensus 1090 F~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfT 1169 (1416)
T KOG3617|consen 1090 FENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFT 1169 (1416)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHh
Confidence 7777788887776644332 11 11222 246677788999999888877665
Q ss_pred HH----------HHCCCCC----------CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHH---
Q 038622 395 NM----------TSNGCEP----------DIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALF--- 451 (587)
Q Consensus 395 ~~----------~~~~~~~----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--- 451 (587)
++ ++.|-.. ..++|. ++.-|.+.-++..--++++.+... -....++..|+..|.
T Consensus 1170 QAGdKl~AMraLLKSGdt~KI~FFAn~sRqkEiYI-mAANyLQtlDWq~~pq~mK~I~tF--YTKgqafd~LanFY~~cA 1246 (1416)
T KOG3617|consen 1170 QAGDKLSAMRALLKSGDTQKIRFFANTSRQKEIYI-MAANYLQTLDWQDNPQTMKDIETF--YTKGQAFDHLANFYKSCA 1246 (1416)
T ss_pred hhhhHHHHHHHHHhcCCcceEEEEeeccccceeee-ehhhhhhhcccccChHHHhhhHhh--hhcchhHHHHHHHHHHHH
Confidence 42 2222110 111221 222233333333333333333221 111222333333222
Q ss_pred ------------hcCCHHHHHHHHHHHHhcCCCCCHHHHH----------HHHHHHHhCCCCHHHHHHHHHHHHHcCCCC
Q 038622 452 ------------RRKRTTEAMRLFREMMEKADPPDALTYK----------HVFRGLCNGGGPIGEAVDFVIEMLERGFLP 509 (587)
Q Consensus 452 ------------~~g~~~~A~~~~~~~~~~~~~~~~~~~~----------~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p 509 (587)
..|-.++|-+++.++..++ .....+. ..+........+..+.++..+.+++....|
T Consensus 1247 qiEiee~q~ydKa~gAl~eA~kCl~ka~~k~--~~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc~~lleep~ld 1324 (1416)
T KOG3617|consen 1247 QIEIEELQTYDKAMGALEEAAKCLLKAEQKN--MSTTGLDALQEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLEEPILD 1324 (1416)
T ss_pred HhhHHHHhhhhHHhHHHHHHHHHHHHHHhhc--chHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCcCCC
Confidence 1234455555565555432 1111122 122222222222566666677777643333
Q ss_pred C----HHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCC
Q 038622 510 E----FSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSD 545 (587)
Q Consensus 510 ~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 545 (587)
+ ...+..|+..+....+|..|-+.++.+..+.|.-+
T Consensus 1325 ~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~p~~~ 1364 (1416)
T KOG3617|consen 1325 DIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKVPNVD 1364 (1416)
T ss_pred CcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcCCccc
Confidence 2 45777888999999999999999999999888754
No 85
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.48 E-value=7e-11 Score=98.62 Aligned_cols=203 Identities=15% Similarity=0.093 Sum_probs=99.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHH
Q 038622 338 YNTLIDGLCKSRRVEDAAQLMDQMIME-GLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLC 416 (587)
Q Consensus 338 ~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 416 (587)
++.-...+.+.|+++.|.+.+..|.-. ....|+.|+..+.-.- ..+++.....-+.-+...++. ..+++..++-.|+
T Consensus 244 fNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPf-P~ETFANlLllyC 321 (459)
T KOG4340|consen 244 FNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPF-PPETFANLLLLYC 321 (459)
T ss_pred hhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCC-ChHHHHHHHHHHh
Confidence 333344455666666666666555421 1123445544443221 223444444444444444333 2456666666777
Q ss_pred hcCChHHHHHHHHHHHHcCCC-CChHhHHHHHHHH-HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCC--H
Q 038622 417 KAGRVEVASKLLRSIQMKGIV-LTPQAYNPVIQAL-FRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGP--I 492 (587)
Q Consensus 417 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~ 492 (587)
+..-++.|..++-+-...... .++..|+ ++.++ ...-.+++|.+-++.....- ...-.....-+..-....++ .
T Consensus 322 KNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l-~~kLRklAi~vQe~r~~~dd~a~ 399 (459)
T KOG4340|consen 322 KNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGML-TEKLRKLAIQVQEARHNRDDEAI 399 (459)
T ss_pred hhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcccHHHH
Confidence 766666666665432211000 1122222 22332 23445666666555443310 00000011111111111110 2
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCchh
Q 038622 493 GEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDRET 548 (587)
Q Consensus 493 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 548 (587)
..|++-|++.++. -..+....++.|+...++..+.+.|++..+...++++|.
T Consensus 400 R~ai~~Yd~~LE~----YLPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~ehd~Wk 451 (459)
T KOG4340|consen 400 RKAVNEYDETLEK----YLPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCNDHDVWK 451 (459)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHHhhhcccceee
Confidence 2334444444442 123456678899999999999999999999988888874
No 86
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.48 E-value=1.5e-10 Score=96.73 Aligned_cols=317 Identities=14% Similarity=0.042 Sum_probs=195.8
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 038622 22 TFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFC 101 (587)
Q Consensus 22 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 101 (587)
-+.+++..+.+..++..|++++..-.+++ +.+......++.+|....++..|-..|+++-..- |.-...-..-+..+.
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~-P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH-PELEQYRLYQAQSLY 89 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-hHHHHHHHHHHHHHH
Confidence 46677778889999999999998887775 5577788889999999999999999999998763 323333344567788
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCh--hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHH
Q 038622 102 KEGRIEDALSFIQEMVSEGFNPDQ--FTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEA 179 (587)
Q Consensus 102 ~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 179 (587)
+.+.+.+|+.+...|... +.. .+...-.......+++..+..+.++.... .+..+....+....+.|+++.|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHH
Confidence 899999999998887653 222 12222223344678888999888887643 3667777778888899999999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhh----HHHHHHHHHhcCChHHHHHHHHH
Q 038622 180 VEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCT----FNSLIQGLCLTSNFDVAMELFQE 255 (587)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~ 255 (587)
.+-|+.....+-- ++-.-..++-+..+.++++.|++...++.++|+...+.. -...+.+-...+-...+...
T Consensus 164 vqkFqaAlqvsGy-qpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sa--- 239 (459)
T KOG4340|consen 164 VQKFQAALQVSGY-QPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSA--- 239 (459)
T ss_pred HHHHHHHHhhcCC-CchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHH---
Confidence 9999998877422 334445667788899999999999999988775522210 00000000000000000000
Q ss_pred HHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC
Q 038622 256 MKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSG-CARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRN 334 (587)
Q Consensus 256 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 334 (587)
-...++.-...+.+.++++.|.+.+..|.... ...|+.++..++-.- ..+++.+..+-+.-+...+ |..
T Consensus 240 --------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP 309 (459)
T KOG4340|consen 240 --------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFP 309 (459)
T ss_pred --------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCC
Confidence 01223333444555566666666555553221 123444444433221 2233444444444444443 344
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038622 335 SVTYNTLIDGLCKSRRVEDAAQLMDQ 360 (587)
Q Consensus 335 ~~~~~~l~~~~~~~~~~~~A~~~~~~ 360 (587)
..+|..++-.|+++.-++.|..++.+
T Consensus 310 ~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 310 PETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred hHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 55666666666666666666555543
No 87
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.46 E-value=9.4e-11 Score=105.87 Aligned_cols=222 Identities=14% Similarity=-0.009 Sum_probs=149.8
Q ss_pred HHHcCChhhHHHHHHhhccCC-CC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 038622 30 LCKAHQIRPAILMMEEMPGYG-LA--PDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRI 106 (587)
Q Consensus 30 ~~~~~~~~~A~~~~~~~~~~~-~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 106 (587)
....+..+.++..+.+++... .. .....|..++..+...|++++|...|+++++.+ |.+...|+.++..+...|++
T Consensus 36 ~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~ 114 (296)
T PRK11189 36 LQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNF 114 (296)
T ss_pred cCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCH
Confidence 344466777777777777532 11 124567788888888899999999898888876 56778888888888899999
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 038622 107 EDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQM 186 (587)
Q Consensus 107 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 186 (587)
++|...|+++++.+ |.+..+|..++.++...|++++|.+.|+...+. .|+..............++.++|...|.+.
T Consensus 115 ~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 115 DAAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 99999998888763 445667888888888889999999999888875 343322222223344567888888888765
Q ss_pred HhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhC---CC---CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038622 187 ILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSK---GI---LPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKG 260 (587)
Q Consensus 187 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 260 (587)
.... +++...+ .......|+...+ ..+..+... .+ +.....|..++..+...|++++|...|+++.+.+
T Consensus 192 ~~~~-~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 192 YEKL-DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HhhC-CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 5432 2222221 2223334444333 233333321 11 1134578888888889999999999999888775
No 88
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.45 E-value=1.5e-10 Score=104.57 Aligned_cols=225 Identities=13% Similarity=0.022 Sum_probs=124.1
Q ss_pred ChHHHHHHHHHHHHcC-CCC--CHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 038622 245 NFDVAMELFQEMKTKG-CQP--DEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEE 321 (587)
Q Consensus 245 ~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 321 (587)
..+.++.-+.+++... ..| ....|..++..+...|+.++|...|+++.+.. |.+...+..++..+...|++++|..
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4455555555555421 111 13456666667777777777777777776664 4556667777777777777777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 038622 322 IFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGC 401 (587)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 401 (587)
.|++..+.. |.+...+..++.++...|++++|.+.+++.+.. .|+..............+++++|...+.+.....
T Consensus 120 ~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~- 195 (296)
T PRK11189 120 AFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL- 195 (296)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-
Confidence 777776654 445566666666677777777777777777764 2332211111222334556777777775544321
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHc---CC--CC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH
Q 038622 402 EPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMK---GI--VL-TPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDA 475 (587)
Q Consensus 402 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 475 (587)
.|+. +. ........|+...+ ..++.+.+. .+ .| ...+|..++..+...|++++|+..|+++++.+ +++.
T Consensus 196 ~~~~--~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~ 270 (296)
T PRK11189 196 DKEQ--WG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNF 270 (296)
T ss_pred Cccc--cH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchH
Confidence 2221 11 12222334444333 233333321 11 01 23466777777777777777777777777654 4444
Q ss_pred HHHH
Q 038622 476 LTYK 479 (587)
Q Consensus 476 ~~~~ 479 (587)
..+.
T Consensus 271 ~e~~ 274 (296)
T PRK11189 271 VEHR 274 (296)
T ss_pred HHHH
Confidence 4443
No 89
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.45 E-value=1e-10 Score=109.81 Aligned_cols=237 Identities=19% Similarity=0.205 Sum_probs=151.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHc-----C-CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CC
Q 038622 302 TYNTLIDGFCKLKRIEEAEEIFDEMEIQ-----G-ISRNS-VTYNTLIDGLCKSRRVEDAAQLMDQMIME-----GL-KP 368 (587)
Q Consensus 302 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~-~~ 368 (587)
+...++..|...|+++.|+..+...... | ..+.. ...+.+...|...+++++|..+|++++.. |. .|
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3333444555555555555554444332 0 01111 12223556667777777777777777642 11 11
Q ss_pred C-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCC-cchHHHHHHHHHhcCChHHHHHHHHHHHHc---CCC
Q 038622 369 D-KFTYNSLLTYYCRAGDIKRAADIVQNMTSN-----GC-EPD-IVTYGTLIGGLCKAGRVEVASKLLRSIQMK---GIV 437 (587)
Q Consensus 369 ~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~ 437 (587)
. ..+++.|..+|...|++++|...++++.+. +. .|. ...+..++..+...+++++|..++++..+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 1 235666777777777777777777665441 11 112 223556677777888888888888877654 122
Q ss_pred CC----hHhHHHHHHHHHhcCCHHHHHHHHHHHHhc-----C--CCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--
Q 038622 438 LT----PQAYNPVIQALFRRKRTTEAMRLFREMMEK-----A--DPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLE-- 504 (587)
Q Consensus 438 ~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-- 504 (587)
++ ..++..++..|...|++++|.+++++++.. + ..-....++.++..|.+.++ +.+|.++|.++..
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~-~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKK-YEEAEQLFEEAKDIM 439 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcc-cchHHHHHHHHHHHH
Confidence 22 257889999999999999999999999874 1 12224566778888877777 8989888888663
Q ss_pred --cCC-CCC-HHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 038622 505 --RGF-LPE-FSSFYMLAEGLVSLGKEETLVELIDMVMD 539 (587)
Q Consensus 505 --~~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 539 (587)
.|. .|+ ...|.+|+.+|..+|++++|.++.+.+..
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 121 232 56778999999999999999999998873
No 90
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.41 E-value=3.1e-11 Score=110.29 Aligned_cols=227 Identities=15% Similarity=0.140 Sum_probs=178.6
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC
Q 038622 306 LIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGD 385 (587)
Q Consensus 306 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 385 (587)
.+.-+.+.|++.+|.-.|+.....+ |.+...|..|+.....+++-..|+..++++++.. +.+...+..|.-.|...|.
T Consensus 291 eG~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 291 EGCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhh
Confidence 4555778899999999999888876 7788899999999999999999999999999853 2356788888888999999
Q ss_pred HHHHHHHHHHHHHCCCCCCcchHHHHH-----------HHHHhcCChHHHHHHHHHHH-HcCCCCChHhHHHHHHHHHhc
Q 038622 386 IKRAADIVQNMTSNGCEPDIVTYGTLI-----------GGLCKAGRVEVASKLLRSIQ-MKGIVLTPQAYNPVIQALFRR 453 (587)
Q Consensus 386 ~~~A~~~~~~~~~~~~~~~~~~~~~l~-----------~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~ 453 (587)
-..|...++..+...++ |..+. ..+.....+....++|-.+. ..+..+++.+...|+-.|...
T Consensus 369 q~~Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls 443 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLS 443 (579)
T ss_pred HHHHHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcc
Confidence 89999999888764211 10000 01111222334444554444 334447888999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHhHHHH
Q 038622 454 KRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPE-FSSFYMLAEGLVSLGKEETLVE 532 (587)
Q Consensus 454 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~ 532 (587)
|++++|+.+|+.++... |.|...|+.++..++...+ .++|+..|.++++ +.|. ..+.++|+-.|...|.|++|.+
T Consensus 444 ~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~-s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~ 519 (579)
T KOG1125|consen 444 GEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNR-SEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVK 519 (579)
T ss_pred hHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcc-cHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHH
Confidence 99999999999999864 7788899999988877777 9999999999998 6785 7788999999999999999999
Q ss_pred HHHHHHhcCCC
Q 038622 533 LIDMVMDKAKF 543 (587)
Q Consensus 533 ~~~~~~~~~~~ 543 (587)
.|=.++...+.
T Consensus 520 hlL~AL~mq~k 530 (579)
T KOG1125|consen 520 HLLEALSMQRK 530 (579)
T ss_pred HHHHHHHhhhc
Confidence 99999877766
No 91
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.40 E-value=3.7e-10 Score=106.12 Aligned_cols=237 Identities=19% Similarity=0.176 Sum_probs=162.6
Q ss_pred HhHHHHHHHHHccCChHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc-----C--C
Q 038622 266 FTYNMLIDSLCSRGMLEEALKLLKEMESS-------GCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQ-----G--I 331 (587)
Q Consensus 266 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~ 331 (587)
.+...++..|...|+++.|+.+++.+++. ..+.=....+.++..|...+++.+|..+|+++... | .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34445666666666666666666665543 11111123344667777778888888777776543 1 1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CCCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHHC---CC
Q 038622 332 SRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIME-----GL-KPDKF-TYNSLLTYYCRAGDIKRAADIVQNMTSN---GC 401 (587)
Q Consensus 332 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~ 401 (587)
+.-..+++.|..+|.+.|++++|...++++..- +. .|... .++.++..+...+++++|..+++...+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 122345667777788888888887777776541 11 12222 4566677788889999999988876552 12
Q ss_pred CCC----cchHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC--C-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhc-
Q 038622 402 EPD----IVTYGTLIGGLCKAGRVEVASKLLRSIQMK----GIV--L-TPQAYNPVIQALFRRKRTTEAMRLFREMMEK- 469 (587)
Q Consensus 402 ~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 469 (587)
.++ ..++..|+..|...|++++|.+++++++.. +.. + ....++.++..|.+.+++.+|.++|.+...-
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 357889999999999999999999998765 111 1 1356788999999999999999999887652
Q ss_pred ---C--CCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 038622 470 ---A--DPPDALTYKHVFRGLCNGGGPIGEAVDFVIEML 503 (587)
Q Consensus 470 ---~--~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~ 503 (587)
| .|....++..++..|...|+ +++|+++.+.++
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~-~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGN-YEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHccc-HHHHHHHHHHHH
Confidence 2 12334578899999999999 999999999887
No 92
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=2.6e-07 Score=90.53 Aligned_cols=535 Identities=12% Similarity=0.129 Sum_probs=296.7
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhhHHHHHHhhccCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 038622 6 TAHADMVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYG--LAPDERTFTTLMQGLIEEGNLDGALRIREQMVE 83 (587)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 83 (587)
++-+.++..+ ..+..-|..+.+.|.+.|-+.+|.+.|.++.... +......--.-+..|...-.++.+.+.++.|..
T Consensus 593 qVADAILgN~-mFtHyDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~ 671 (1666)
T KOG0985|consen 593 QVADAILGND-MFTHYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLS 671 (1666)
T ss_pred HHHHHHHhcc-ccccccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3344444333 4455668899999999999999998887775431 000000001123345556678999999999999
Q ss_pred cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----------CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 038622 84 HGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSE-----------GFNPDQFTYNTLVNGLCKVGHVKQALEVMDMML 152 (587)
Q Consensus 84 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 152 (587)
.++..+..+...++.-|...=-.+..+++|+....- ++..|+......+.+.++.|++.+..++.++--
T Consensus 672 ~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn 751 (1666)
T KOG0985|consen 672 ANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESN 751 (1666)
T ss_pred HHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccc
Confidence 888777777777777676665566667777665432 346677788888999999999988887765421
Q ss_pred ------------hCCC---CC-----CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-----------CCChhh----
Q 038622 153 ------------QEGF---DP-----DVFTYNSLISGLCKLGEVEEAVEILNQMILRDC-----------SPNTIT---- 197 (587)
Q Consensus 153 ------------~~~~---~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~~~~---- 197 (587)
+... -| |..-+..=+-.|.-.++..+-+++|-+-+.-+- .-+...
T Consensus 752 ~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~L 831 (1666)
T KOG0985|consen 752 CYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNL 831 (1666)
T ss_pred cCCHHHHHHHHHhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHH
Confidence 1110 01 111111111122222333333333322111100 001111
Q ss_pred ---------HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHH----HHHHH-----H-HH
Q 038622 198 ---------YNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAM----ELFQE-----M-KT 258 (587)
Q Consensus 198 ---------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~----~~~~~-----~-~~ 258 (587)
...|..-.-+.++..--..+++.....|.. ++.+++.+...|...++-.+-. ..|+. . .+
T Consensus 832 i~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEK 910 (1666)
T KOG0985|consen 832 ILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEK 910 (1666)
T ss_pred HHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcc
Confidence 122233333445555555666666677655 7778888877766554322211 01110 0 00
Q ss_pred c-----------C--------CCCCHHhHHHHHHHHHccCChHH---H--------HHHHHHHHHCCC--CCCHHHHHHH
Q 038622 259 K-----------G--------CQPDEFTYNMLIDSLCSRGMLEE---A--------LKLLKEMESSGC--ARNVVTYNTL 306 (587)
Q Consensus 259 ~-----------~--------~~~~~~~~~~l~~~~~~~~~~~~---a--------~~~~~~~~~~~~--~~~~~~~~~l 306 (587)
+ | +-.....|...++.+....+.+- . ..+.++....++ ..++.....-
T Consensus 911 RDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~t 990 (1666)
T KOG0985|consen 911 RDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVT 990 (1666)
T ss_pred cCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHH
Confidence 0 1 00011233444444444443321 1 233444444332 2345556666
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-------hhHHHHH
Q 038622 307 IDGFCKLKRIEEAEEIFDEMEIQGIS--RNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDK-------FTYNSLL 377 (587)
Q Consensus 307 ~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~ 377 (587)
..++...+-+.+-+++++++.-.+.+ .+...-+.++-...+ -+.....++.+++-.-. .|+. ..|....
T Consensus 991 VkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyD-a~~ia~iai~~~LyEEAF 1068 (1666)
T KOG0985|consen 991 VKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYD-APDIAEIAIENQLYEEAF 1068 (1666)
T ss_pred HHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCC-chhHHHHHhhhhHHHHHH
Confidence 77777778888888888877543211 112222222222222 23333444444433211 1111 0111111
Q ss_pred HHHH--------------hcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhH
Q 038622 378 TYYC--------------RAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAY 443 (587)
Q Consensus 378 ~~~~--------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 443 (587)
..|- ..++.++|.++-++. ..+..|..++.+-.+.|...+|++-|-++ .|+..|
T Consensus 1069 ~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y 1136 (1666)
T KOG0985|consen 1069 AIFKKFDMNVSAIQVLIENIGSLDRAYEFAERC------NEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNY 1136 (1666)
T ss_pred HHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhh------CChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHH
Confidence 1111 223344444443332 14567888888888888888888766432 266778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 038622 444 NPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVS 523 (587)
Q Consensus 444 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 523 (587)
..++....+.|.|++-.+++..++++.-.|...+ .++.+|++.++ ..+-.++ + ..|+..-....|+-|+.
T Consensus 1137 ~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt~r-l~elE~f----i---~gpN~A~i~~vGdrcf~ 1206 (1666)
T KOG0985|consen 1137 LEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAKTNR-LTELEEF----I---AGPNVANIQQVGDRCFE 1206 (1666)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHHhch-HHHHHHH----h---cCCCchhHHHHhHHHhh
Confidence 8888888899999998888888877644444433 46667778777 6554433 3 25788888888999999
Q ss_pred cCCHhHHHHHHHHHHhcCCCCCchhhhhhhHHHHHHHHHHHHhcchhhhc
Q 038622 524 LGKEETLVELIDMVMDKAKFSDRETSMVRGFLKIRKFQDALATFGDILDS 573 (587)
Q Consensus 524 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 573 (587)
.|.|+.|.-+|.... .|..++..++..|.|..|+..-+++...
T Consensus 1207 ~~~y~aAkl~y~~vS-------N~a~La~TLV~LgeyQ~AVD~aRKAns~ 1249 (1666)
T KOG0985|consen 1207 EKMYEAAKLLYSNVS-------NFAKLASTLVYLGEYQGAVDAARKANST 1249 (1666)
T ss_pred hhhhHHHHHHHHHhh-------hHHHHHHHHHHHHHHHHHHHHhhhccch
Confidence 999988888877642 2556667788888888888877776543
No 93
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.38 E-value=3.7e-09 Score=101.61 Aligned_cols=253 Identities=16% Similarity=0.169 Sum_probs=177.2
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 038622 41 LMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEG 120 (587)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 120 (587)
.++..+...|+.||..+|..++..|+..|+.+.|- +|.-|.-.+.+....++..++......++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 35556677788999999999999999999999998 9999988888999999999999988888877665
Q ss_pred CCCChhhHHHHHHHHHhcCChHH---HHHHHHHHHh----CCCCCCcccH---------------HHHHHHHHhcCCHHH
Q 038622 121 FNPDQFTYNTLVNGLCKVGHVKQ---ALEVMDMMLQ----EGFDPDVFTY---------------NSLISGLCKLGEVEE 178 (587)
Q Consensus 121 ~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~----~~~~~~~~~~---------------~~l~~~~~~~g~~~~ 178 (587)
.|.+.+|..+..+|.+.||... +.+.++.+.. .|+. ....+ ...+......|-++.
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvg-s~e~~fl~k~~c~p~~lpda~n~illlv~eglwaq 157 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVG-SPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQ 157 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccC-cHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHH
Confidence 5778899999999999998654 3332222222 1111 11111 122333344455666
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHh-ccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 038622 179 AVEILNQMILRDCSPNTITYNTLISTLC-KENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMK 257 (587)
Q Consensus 179 a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 257 (587)
+++++..+...... .+... .++-.. ....+++-..+.+.+.+ .|++.++..++.+-...|+.+.|..++.+|.
T Consensus 158 llkll~~~Pvsa~~-~p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emk 231 (1088)
T KOG4318|consen 158 LLKLLAKVPVSAWN-APFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMK 231 (1088)
T ss_pred HHHHHhhCCccccc-chHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 66666555433211 11111 122222 23344444444444443 4788999999999999999999999999999
Q ss_pred HcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 038622 258 TKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKR 315 (587)
Q Consensus 258 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 315 (587)
+.|++.+..-|..++-. .++...++.+++-|...|+.|+..++......+...|.
T Consensus 232 e~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 232 EKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 99988887766666543 77888888889999999999988888776666665444
No 94
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.34 E-value=1.3e-10 Score=106.24 Aligned_cols=229 Identities=11% Similarity=0.063 Sum_probs=181.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcC
Q 038622 340 TLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAG 419 (587)
Q Consensus 340 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 419 (587)
..+.-+.+.|+..+|.-.|+.++... +-+...|..|+......++-..|+..+++..+.++. +...+..|+-.|...|
T Consensus 290 ~eG~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg 367 (579)
T KOG1125|consen 290 KEGCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEG 367 (579)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhh
Confidence 34556778999999999999999874 336779999999999999999999999999997554 7888999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCChHhHHHHH---------HHHHhcCCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHhCC
Q 038622 420 RVEVASKLLRSIQMKGIVLTPQAYNPVI---------QALFRRKRTTEAMRLFREMME-KADPPDALTYKHVFRGLCNGG 489 (587)
Q Consensus 420 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~---------~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~ 489 (587)
.-..|.+.++..+...++- .|.... .............++|-++.. .+..+|+.....|+-.|...|
T Consensus 368 ~q~~Al~~L~~Wi~~~p~y---~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ 444 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPKY---VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSG 444 (579)
T ss_pred hHHHHHHHHHHHHHhCccc---hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcch
Confidence 9999999999987642210 010000 011111223344455544444 443477887777887777888
Q ss_pred CCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC-CchhhhhhhHHHHHHHHHHHHhc
Q 038622 490 GPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS-DRETSMVRGFLKIRKFQDALATF 567 (587)
Q Consensus 490 ~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~ 567 (587)
+ +++|++.|+.++. ++| |...|..||..+....+.++|+..|+++++..|.- -+++.++.+|...|.|.+|+++|
T Consensus 445 e-fdraiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hl 521 (579)
T KOG1125|consen 445 E-FDRAVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHL 521 (579)
T ss_pred H-HHHHHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHH
Confidence 8 9999999999998 678 78889999999999999999999999999999976 45899999999999999999999
Q ss_pred chhhhccCc
Q 038622 568 GDILDSRMP 576 (587)
Q Consensus 568 ~~~~~~~~~ 576 (587)
-.++...++
T Consensus 522 L~AL~mq~k 530 (579)
T KOG1125|consen 522 LEALSMQRK 530 (579)
T ss_pred HHHHHhhhc
Confidence 999887755
No 95
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.34 E-value=2e-08 Score=95.87 Aligned_cols=413 Identities=16% Similarity=0.134 Sum_probs=241.0
Q ss_pred CCHHHHHHHHH--HHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--------C-C
Q 038622 53 PDERTFTTLMQ--GLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSE--------G-F 121 (587)
Q Consensus 53 ~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~-~ 121 (587)
-|+.+--.++. .|...|+.|.|.+..+.+. +..+|..++..+.+.++.+-|.-.+-.|... . -
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 34555455543 3557788888887766654 3467888888887777666665444333211 0 0
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 038622 122 NPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTL 201 (587)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 201 (587)
.++ ..-...+......|..++|..+|++..+. ..+-..|...|.+++|.++-+.--.. .-..+|...
T Consensus 798 ~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRi---HLr~Tyy~y 864 (1416)
T KOG3617|consen 798 NGE-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRI---HLRNTYYNY 864 (1416)
T ss_pred CCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccce---ehhhhHHHH
Confidence 122 33334455556778888888888887763 23445566778888888776542211 123456666
Q ss_pred HHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCCh
Q 038622 202 ISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGML 281 (587)
Q Consensus 202 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 281 (587)
+.-+...++.+.|++.|++... |....+..| .+...+++.|- +. ..|...|.-.+..+-..|+.
T Consensus 865 A~~Lear~Di~~AleyyEK~~~----hafev~rmL-------~e~p~~~e~Yv---~~--~~d~~L~~WWgqYlES~Gem 928 (1416)
T KOG3617|consen 865 AKYLEARRDIEAALEYYEKAGV----HAFEVFRML-------KEYPKQIEQYV---RR--KRDESLYSWWGQYLESVGEM 928 (1416)
T ss_pred HHHHHhhccHHHHHHHHHhcCC----hHHHHHHHH-------HhChHHHHHHH---Hh--ccchHHHHHHHHHHhcccch
Confidence 6777777888888888775421 111111111 12222222221 11 22455666667777788999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038622 282 EEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQM 361 (587)
Q Consensus 282 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 361 (587)
+.|+.+|..+.+ |..+.+..+-.|+.++|-++-++ ..|......+.+.|...|++.+|..+|.++
T Consensus 929 daAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 929 DAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 999999887764 55667777888999988877655 235666778888999999999999988877
Q ss_pred HHcC--C----CCCHhhHHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHH-----
Q 038622 362 IMEG--L----KPDKFTYNSLLTYYC--RAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLL----- 428 (587)
Q Consensus 362 ~~~~--~----~~~~~~~~~l~~~~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~----- 428 (587)
..-. + ..|. -..|...+. ...+.-.|..+|++.-- ........|-+.|.+.+|+++-
T Consensus 994 qafsnAIRlcKEnd~--~d~L~nlal~s~~~d~v~aArYyEe~g~--------~~~~AVmLYHkAGm~~kALelAF~tqQ 1063 (1416)
T KOG3617|consen 994 QAFSNAIRLCKENDM--KDRLANLALMSGGSDLVSAARYYEELGG--------YAHKAVMLYHKAGMIGKALELAFRTQQ 1063 (1416)
T ss_pred HHHHHHHHHHHhcCH--HHHHHHHHhhcCchhHHHHHHHHHHcch--------hhhHHHHHHHhhcchHHHHHHHHhhcc
Confidence 5410 0 0010 111222221 22233344444444211 0112233455556665555441
Q ss_pred ----HHHHH-cCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 038622 429 ----RSIQM-KGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEML 503 (587)
Q Consensus 429 ----~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~ 503 (587)
+-+.+ .+...|+...+.-+..+....++++|..++-.+.+ +...+..|...+ ..--.++.+.|.
T Consensus 1064 f~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~~n--v~vtee~aE~mT 1132 (1416)
T KOG3617|consen 1064 FSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE---------FSGALQLCKNRN--VRVTEEFAELMT 1132 (1416)
T ss_pred cHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhcCC--CchhHHHHHhcC
Confidence 11111 13444667788888888888999999998887775 334444444333 344445555554
Q ss_pred -HcCCCCC----HHHHHHHHHHHHccCCHhHHHHHHHH
Q 038622 504 -ERGFLPE----FSSFYMLAEGLVSLGKEETLVELIDM 536 (587)
Q Consensus 504 -~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 536 (587)
.++-.|+ ...+..++.+|.++|.|..|.+-|.+
T Consensus 1133 p~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQ 1170 (1416)
T KOG3617|consen 1133 PTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQ 1170 (1416)
T ss_pred cCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhh
Confidence 2211232 45667888899999988888776644
No 96
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.33 E-value=2.7e-08 Score=94.00 Aligned_cols=200 Identities=14% Similarity=0.064 Sum_probs=96.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCc--chHHHHHHHHH
Q 038622 340 TLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCE-PDI--VTYGTLIGGLC 416 (587)
Q Consensus 340 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~--~~~~~l~~~~~ 416 (587)
.+...+...|++++|...+++++... +.+...+..+..++...|++++|...+++....... |+. ..+..++..+.
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 44445556666666666666666542 223444555556666666666666666665553211 111 12334556666
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCh-HhH-H--HHHHHHHhcCCHHHHHHH--HHHH-Hhc-CCCCCHHHHHHHHHHHHhC
Q 038622 417 KAGRVEVASKLLRSIQMKGIVLTP-QAY-N--PVIQALFRRKRTTEAMRL--FREM-MEK-ADPPDALTYKHVFRGLCNG 488 (587)
Q Consensus 417 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~-~--~l~~~~~~~g~~~~A~~~--~~~~-~~~-~~~~~~~~~~~l~~~~~~~ 488 (587)
..|++++|..+++++....+.... ... . .+...+...|....+.+. +... ... ..+............+...
T Consensus 198 ~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 277 (355)
T cd05804 198 ERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGA 277 (355)
T ss_pred HCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcC
Confidence 666666666666665432111111 100 1 122223333332222222 1111 110 0011111112344455666
Q ss_pred CCCHHHHHHHHHHHHHcCCC-------C-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcC
Q 038622 489 GGPIGEAVDFVIEMLERGFL-------P-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKA 541 (587)
Q Consensus 489 ~~~~~~A~~~~~~~~~~~~~-------p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 541 (587)
|+ .++|...++.+...... . ........+.++...|++++|.+.+..++...
T Consensus 278 ~~-~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 278 GD-KDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred CC-HHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 66 77777777776532111 0 23334456667778888888888887777544
No 97
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.33 E-value=1.7e-08 Score=95.40 Aligned_cols=199 Identities=12% Similarity=0.112 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC-C-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 038622 55 ERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLV-T-NVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLV 132 (587)
Q Consensus 55 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 132 (587)
+..+..+...+...|+.+.+...+....+..... + .......+..+...|++++|...+++++... |.+...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-h
Confidence 3344444455555555555555555444332111 1 1112222334455566666666666655542 323323221 1
Q ss_pred HHHHh----cCChHHHHHHHHHHHhCCCCCC-cccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhc
Q 038622 133 NGLCK----VGHVKQALEVMDMMLQEGFDPD-VFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCK 207 (587)
Q Consensus 133 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 207 (587)
..+.. .+....+.+.++.... ..|+ ......++..+...|++++|...+++..... +.+...+..++.++..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~ 160 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWAP--ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEM 160 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccCc--CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHH
Confidence 11111 2333333333332111 1111 2223334455566666666666666666654 3345555666666666
Q ss_pred cCCHHHHHHHHHHHHhCCCC-CC--HhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038622 208 ENQVEEATELARVLTSKGIL-PD--VCTFNSLIQGLCLTSNFDVAMELFQEMKT 258 (587)
Q Consensus 208 ~~~~~~a~~~~~~~~~~~~~-~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 258 (587)
.|++++|...+++....... ++ ...+..+...+...|++++|..+++++..
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 66666666666665553211 11 12334555666666667777666666543
No 98
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.30 E-value=4.3e-08 Score=92.61 Aligned_cols=62 Identities=13% Similarity=-0.061 Sum_probs=39.8
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCchhhh
Q 038622 485 LCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDRETSM 550 (587)
Q Consensus 485 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 550 (587)
.+..+. ++-|.++.+-+.+. ..+.+...++..+...|++++|-+.|-.+++.+.-+-+|..-
T Consensus 973 a~d~~a-fd~afdlari~~k~---k~~~vhlk~a~~ledegk~edaskhyveaiklntynitwcqa 1034 (1636)
T KOG3616|consen 973 AADNCA-FDFAFDLARIAAKD---KMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNITWCQA 1034 (1636)
T ss_pred hhcccc-hhhHHHHHHHhhhc---cCccchhHHhhhhhhccchhhhhHhhHHHhhcccccchhhhc
Confidence 344455 66666655555432 234455566777778888888888888888887776555443
No 99
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.27 E-value=1.1e-06 Score=86.43 Aligned_cols=262 Identities=13% Similarity=0.129 Sum_probs=136.0
Q ss_pred HHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038622 265 EFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDG 344 (587)
Q Consensus 265 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 344 (587)
+..|..++.+..+.|...+|++-|-++ .|+..|..++....+.|.+++-.+.+..+.+....| .+=..++-+
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~--~id~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREP--YIDSELIFA 1175 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc--cchHHHHHH
Confidence 345566666666666666665554332 234455556666666666666666555554443222 223345555
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHH
Q 038622 345 LCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVA 424 (587)
Q Consensus 345 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 424 (587)
|++.++..+..+++ ..|+.......+.-|...+.++.|.-+|... ..|..|+..+...|++..|
T Consensus 1176 yAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~A 1239 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGA 1239 (1666)
T ss_pred HHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHH
Confidence 66555554443332 1345555555555555555555555544332 2345555555555666655
Q ss_pred HHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 038622 425 SKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLE 504 (587)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 504 (587)
...-+++. +..+|..+..+|...+.+.-|. +.-..+-....-+..++..|...|- +++-+.+++..+-
T Consensus 1240 VD~aRKAn------s~ktWK~VcfaCvd~~EFrlAQ-----iCGL~iivhadeLeeli~~Yq~rGy-FeElIsl~Ea~LG 1307 (1666)
T KOG0985|consen 1240 VDAARKAN------STKTWKEVCFACVDKEEFRLAQ-----ICGLNIIVHADELEELIEYYQDRGY-FEELISLLEAGLG 1307 (1666)
T ss_pred HHHhhhcc------chhHHHHHHHHHhchhhhhHHH-----hcCceEEEehHhHHHHHHHHHhcCc-HHHHHHHHHhhhc
Confidence 55444322 3345555555555544443321 2222222334445566666666676 7777777777663
Q ss_pred cCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCC---------CCchhhhhhhHHHHHHHHHHHH
Q 038622 505 RGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKF---------SDRETSMVRGFLKIRKFQDALA 565 (587)
Q Consensus 505 ~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~A~~ 565 (587)
+.- ....+..|+-.|.+- ++++-.+.++-....-.- ...|..+...|.+...|+.|.-
T Consensus 1308 --LERAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa~ 1375 (1666)
T KOG0985|consen 1308 --LERAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAAL 1375 (1666)
T ss_pred --hhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 222 455566666666554 455555555544322211 1236666666777777776653
No 100
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.27 E-value=2.1e-07 Score=88.10 Aligned_cols=165 Identities=18% Similarity=0.170 Sum_probs=67.1
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 038622 277 SRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQ 356 (587)
Q Consensus 277 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 356 (587)
....+.+|+.+++.+.... .....|..++..|...|+++.|.++|.+.- .++..+.+|.+.|+|.+|.+
T Consensus 744 ~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~k 812 (1636)
T KOG3616|consen 744 GAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFK 812 (1636)
T ss_pred hhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHH
Confidence 3344444444444444331 122233344444555555555555443221 22333444555555555544
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 038622 357 LMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGI 436 (587)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 436 (587)
+-++... .......|..-..-.-.+|.+.+|.++|-.+.. |+. .+.+|-+.|..+..+++.++-..
T Consensus 813 la~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~~-----aiqmydk~~~~ddmirlv~k~h~--- 878 (1636)
T KOG3616|consen 813 LAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PDK-----AIQMYDKHGLDDDMIRLVEKHHG--- 878 (1636)
T ss_pred HHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccC----chH-----HHHHHHhhCcchHHHHHHHHhCh---
Confidence 4443321 111222233333333444444444444432211 221 23344444554444444433221
Q ss_pred CCChHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 038622 437 VLTPQAYNPVIQALFRRKRTTEAMRLFREM 466 (587)
Q Consensus 437 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 466 (587)
..-..+...++.-+...|+...|...|-++
T Consensus 879 d~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 879 DHLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred hhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 111233444455555555555555544443
No 101
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.26 E-value=7e-10 Score=98.42 Aligned_cols=252 Identities=15% Similarity=0.134 Sum_probs=132.4
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038622 275 LCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDA 354 (587)
Q Consensus 275 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 354 (587)
+.-.|++..++.-.+ ......+........+.+++...|+++.++ .++.... +|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 344555655554433 211111112223344555566666555433 2222222 34444444443333332333444
Q ss_pred HHHHHHHHHcCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038622 355 AQLMDQMIMEGLKP-DKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQM 433 (587)
Q Consensus 355 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 433 (587)
+.-+++.+.....+ +.......+..+...|++++|++++... .+.+.....+.++.+.++++.|.+.++.+.+
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44443333222221 1222222233455567777776666432 2445555566777777777777777777766
Q ss_pred cCCCCChHhHHHHHHHHH----hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC
Q 038622 434 KGIVLTPQAYNPVIQALF----RRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP 509 (587)
Q Consensus 434 ~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p 509 (587)
. . +..+...++.++. ...++.+|..+|+++.+. .++++..++.++.+....|+ +++|.+.+.++++. .|
T Consensus 160 ~--~-eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~-~~eAe~~L~~al~~--~~ 232 (290)
T PF04733_consen 160 I--D-EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGH-YEEAEELLEEALEK--DP 232 (290)
T ss_dssp C--S-CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT--HHHHHHHHHHHCCC---C
T ss_pred c--C-CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHh--cc
Confidence 3 2 2223333333322 233578888888887665 36677777777777778888 88888888887763 34
Q ss_pred -CHHHHHHHHHHHHccCCH-hHHHHHHHHHHhcCCCC
Q 038622 510 -EFSSFYMLAEGLVSLGKE-ETLVELIDMVMDKAKFS 544 (587)
Q Consensus 510 -~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~ 544 (587)
+++++.+++.+....|+. +.+.+++.++....|..
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence 677777888777777777 56667777777777764
No 102
>PLN02789 farnesyltranstransferase
Probab=99.22 E-value=2.5e-08 Score=89.75 Aligned_cols=223 Identities=9% Similarity=0.019 Sum_probs=128.3
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCH--HHH
Q 038622 313 LKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSR-RVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDI--KRA 389 (587)
Q Consensus 313 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~A 389 (587)
.+..++|+..+.+++..+ |.+..+|+....++...| ++++++..+++++.... .+..+|+....++.+.|+. +++
T Consensus 50 ~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 50 DERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred CCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCchhhHHH
Confidence 445556666666665554 444455555555555555 45666666666665432 2334455444444444442 456
Q ss_pred HHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc---CC----HHHHHHH
Q 038622 390 ADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRR---KR----TTEAMRL 462 (587)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~----~~~A~~~ 462 (587)
..+++.+++.+.. +..+|.....++...|+++++++.++++++.++. +..+|+..+.++... |. .++++.+
T Consensus 128 l~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 128 LEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 6666666665443 5566666666666667777777777777766544 556666665555443 22 2456666
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC-------------
Q 038622 463 FREMMEKADPPDALTYKHVFRGLCNG----GGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLG------------- 525 (587)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g------------- 525 (587)
..+++... |.+...|+.+...+... +. ..+|.+++.++++.+ ..+..++..|+++|....
T Consensus 206 ~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~-~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~ 282 (320)
T PLN02789 206 TIDAILAN-PRNESPWRYLRGLFKDDKEALVS-DPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEGLQPTAEFRDTVDTL 282 (320)
T ss_pred HHHHHHhC-CCCcCHHHHHHHHHhcCCccccc-chhHHHHHHHhhccc-CCcHHHHHHHHHHHHhhhccchhhhhhhhcc
Confidence 66777653 55666676666666552 33 456777777766532 225667777777776532
Q ss_pred -----CHhHHHHHHHHHHhcCC
Q 038622 526 -----KEETLVELIDMVMDKAK 542 (587)
Q Consensus 526 -----~~~~A~~~~~~~~~~~~ 542 (587)
..++|.++++.+.+.+|
T Consensus 283 ~~~~~~~~~a~~~~~~l~~~d~ 304 (320)
T PLN02789 283 AEELSDSTLAQAVCSELEVADP 304 (320)
T ss_pred ccccccHHHHHHHHHHHHhhCc
Confidence 23567777776643333
No 103
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.22 E-value=1.3e-07 Score=101.44 Aligned_cols=340 Identities=11% Similarity=0.007 Sum_probs=217.5
Q ss_pred HHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCC------CCC--HHhHHHHHHH
Q 038622 203 STLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGC------QPD--EFTYNMLIDS 274 (587)
Q Consensus 203 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~~ 274 (587)
......|+++.+..++..+.......++.........+...|+++++..++..+...-- .+. ......+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 34455677777666665542111111223334445556678999999999887754310 111 1222334556
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHcCC---CC--CHHHHHHHHHHH
Q 038622 275 LCSRGMLEEALKLLKEMESSGCARNV----VTYNTLIDGFCKLKRIEEAEEIFDEMEIQGI---SR--NSVTYNTLIDGL 345 (587)
Q Consensus 275 ~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~ 345 (587)
+...|++++|...++.........+. .....++..+...|++++|...+.+...... .+ .......+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~ 541 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEIL 541 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHH
Confidence 67899999999999988763211221 2345567777889999999999988764311 11 123445566778
Q ss_pred HhcCCHHHHHHHHHHHHHc----CCC--C-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCC--CcchHHHHHHH
Q 038622 346 CKSRRVEDAAQLMDQMIME----GLK--P-DKFTYNSLLTYYCRAGDIKRAADIVQNMTSN--GCEP--DIVTYGTLIGG 414 (587)
Q Consensus 346 ~~~~~~~~A~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~--~~~~~~~l~~~ 414 (587)
...|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+.... ...+ ....+..++..
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 621 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKI 621 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHH
Confidence 8899999999999887752 211 1 1223445566777889999999999887653 1111 23344556778
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCC-ChHhH-----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH----HHHHHHHH
Q 038622 415 LCKAGRVEVASKLLRSIQMKGIVL-TPQAY-----NPVIQALFRRKRTTEAMRLFREMMEKADPPDAL----TYKHVFRG 484 (587)
Q Consensus 415 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~ 484 (587)
+...|+++.|...++.+....... ....+ ......+...|+.+.|...+....... ..... .+..+..+
T Consensus 622 ~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~-~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 622 SLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPE-FANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCC-CccchhHHHHHHHHHHH
Confidence 889999999999998886531110 11111 112244456889999999987765422 11111 13456667
Q ss_pred HHhCCCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC
Q 038622 485 LCNGGGPIGEAVDFVIEMLER----GFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS 544 (587)
Q Consensus 485 ~~~~~~~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 544 (587)
+...|+ +++|...++++++. |..+ ...+...++.++...|+.++|...+.++++.....
T Consensus 701 ~~~~g~-~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 701 QILLGQ-FDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHcCC-HHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 788898 99999999998853 2122 23466778899999999999999999999877553
No 104
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.20 E-value=2.4e-07 Score=99.29 Aligned_cols=58 Identities=16% Similarity=0.241 Sum_probs=24.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc----CCCCC-hHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038622 411 LIGGLCKAGRVEVASKLLRSIQMK----GIVLT-PQAYNPVIQALFRRKRTTEAMRLFREMME 468 (587)
Q Consensus 411 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 468 (587)
++.++...|+.++|...++++... +.... ..+...++.++...|+.++|...+.++++
T Consensus 697 ~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 697 IARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444445555555554444332 11110 12333344444455555555555555544
No 105
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.20 E-value=1.1e-08 Score=85.71 Aligned_cols=158 Identities=14% Similarity=0.130 Sum_probs=123.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHH
Q 038622 378 TYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTT 457 (587)
Q Consensus 378 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 457 (587)
..|...|+++......+.+.. |.. .+...++.+++...+++..+.++. +...|..++..+...|+++
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~----~~~--------~~~~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~ 90 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLAD----PLH--------QFASQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYD 90 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhC----ccc--------cccCchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHH
Confidence 457788887776544433221 110 112367778888888888887554 7789999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHH-HhCCCC-HHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHH
Q 038622 458 EAMRLFREMMEKADPPDALTYKHVFRGL-CNGGGP-IGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELI 534 (587)
Q Consensus 458 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~-~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 534 (587)
+|...|+++.+.. |.+...+..++.++ ...|+. .++|.+.++++++. .| ++.++..++..+.+.|++++|+..+
T Consensus 91 ~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~--dP~~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 91 NALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTREMIDKALAL--DANEVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999975 66777888888765 555651 49999999999984 56 7899999999999999999999999
Q ss_pred HHHHhcCCCCCchhhhh
Q 038622 535 DMVMDKAKFSDRETSMV 551 (587)
Q Consensus 535 ~~~~~~~~~~~~~~~~~ 551 (587)
+++++..|..+....++
T Consensus 168 ~~aL~l~~~~~~r~~~i 184 (198)
T PRK10370 168 QKVLDLNSPRVNRTQLV 184 (198)
T ss_pred HHHHhhCCCCccHHHHH
Confidence 99999999877655554
No 106
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.18 E-value=1.7e-09 Score=96.04 Aligned_cols=257 Identities=15% Similarity=0.122 Sum_probs=158.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHH
Q 038622 238 QGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIE 317 (587)
Q Consensus 238 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 317 (587)
+-+.-.|++..++.-.+ ........+......+.+++...|+++.++ ..+.... +|.......++..+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 34456677777775555 222211122344556677777788766543 3333333 555566666665554444555
Q ss_pred HHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 038622 318 EAEEIFDEMEIQGIS-RNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNM 396 (587)
Q Consensus 318 ~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 396 (587)
.++.-+......... .+.........++...|++++|++++.+. .+.......+.++...++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555555443322222 12222333334566778888888877642 35666667788888899999999999888
Q ss_pred HHCCCCCCcchHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 038622 397 TSNGCEPDIVTYGTLIGGLCK----AGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADP 472 (587)
Q Consensus 397 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 472 (587)
.+. . +..+...++.++.. .+.+.+|..+|+++.+. ..+++...+.++.+....|++++|.+.+.+++..+ +
T Consensus 158 ~~~--~-eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~ 232 (290)
T PF04733_consen 158 QQI--D-EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-P 232 (290)
T ss_dssp HCC--S-CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--C
T ss_pred Hhc--C-CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-c
Confidence 764 2 33445555555432 33689999999998765 45677888888899999999999999999988765 6
Q ss_pred CCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHH
Q 038622 473 PDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFS 512 (587)
Q Consensus 473 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~ 512 (587)
.++.++..++......|+..+.+.+++.++.. ..|+..
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~--~~p~h~ 270 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ--SNPNHP 270 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH--HTTTSH
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH--hCCCCh
Confidence 66777777877777888844677778888776 346433
No 107
>PLN02789 farnesyltranstransferase
Probab=99.17 E-value=1.6e-07 Score=84.63 Aligned_cols=224 Identities=9% Similarity=0.046 Sum_probs=125.5
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH--HHH
Q 038622 278 RGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLK-RIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRV--EDA 354 (587)
Q Consensus 278 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~A 354 (587)
.+..++|+..+.+++..+ |.+..+|.....++...| ++++++..++++...+ |.+..+|+....++.+.|+. +++
T Consensus 50 ~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 50 DERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred CCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHHH
Confidence 345556666666666554 344445555555555555 4566666666666554 44555555554444444442 455
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhc---CC----hHHHHHH
Q 038622 355 AQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKA---GR----VEVASKL 427 (587)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~----~~~a~~~ 427 (587)
+.++++++.... -+..+|.....++...|++++++..+.++++.++. +...|+....++... |. .++.+.+
T Consensus 128 l~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 128 LEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 666666665432 24556666666666666677777777766665544 445555555444433 21 2355666
Q ss_pred HHHHHHcCCCCChHhHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC-------------
Q 038622 428 LRSIQMKGIVLTPQAYNPVIQALFRR----KRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGG------------- 490 (587)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------- 490 (587)
..+++...+. +..+|+.+...+... ++..+|.+.+.++.+.+ +.+...+..++..++....
T Consensus 206 ~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~ 283 (320)
T PLN02789 206 TIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEGLQPTAEFRDTVDTLA 283 (320)
T ss_pred HHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhhhccchhhhhhhhccc
Confidence 6566654333 456677666666652 34456777777766643 4455566666666654321
Q ss_pred ----CHHHHHHHHHHHHHcCCCC
Q 038622 491 ----PIGEAVDFVIEMLERGFLP 509 (587)
Q Consensus 491 ----~~~~A~~~~~~~~~~~~~p 509 (587)
..++|.+++..+.+ .+|
T Consensus 284 ~~~~~~~~a~~~~~~l~~--~d~ 304 (320)
T PLN02789 284 EELSDSTLAQAVCSELEV--ADP 304 (320)
T ss_pred cccccHHHHHHHHHHHHh--hCc
Confidence 13567777777743 455
No 108
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.15 E-value=5e-06 Score=76.35 Aligned_cols=429 Identities=11% Similarity=0.110 Sum_probs=221.7
Q ss_pred HhCCCCCCHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChh
Q 038622 12 VSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNV 91 (587)
Q Consensus 12 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 91 (587)
++.+ |-|..+|..|++-+-.+ ..+++...++++...- |..+..|...+.......+++....+|.+++.. ..+..
T Consensus 13 ie~n-P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~F-P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlD 87 (656)
T KOG1914|consen 13 IEEN-PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVF-PSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLD 87 (656)
T ss_pred HhcC-CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHh
Confidence 3444 78999999999887655 8999999999998764 677899999999999999999999999999876 34566
Q ss_pred hHHHHHHHHHh-cCCHHH----HHHHHHHHHH-CCCCC-ChhhHHHHHHHH---------HhcCChHHHHHHHHHHHhCC
Q 038622 92 TVNVLVHGFCK-EGRIED----ALSFIQEMVS-EGFNP-DQFTYNTLVNGL---------CKVGHVKQALEVMDMMLQEG 155 (587)
Q Consensus 92 ~~~~l~~~~~~-~~~~~~----a~~~~~~~~~-~~~~~-~~~~~~~l~~~~---------~~~~~~~~a~~~~~~~~~~~ 155 (587)
.|...+.--.+ .|+... ..+.|+-.+. .|..+ +...|...+..+ ..+.+++..+++|.+++...
T Consensus 88 LW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tP 167 (656)
T KOG1914|consen 88 LWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTP 167 (656)
T ss_pred HHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCc
Confidence 77665543222 233332 2333443332 33332 233466555433 23446677788888887642
Q ss_pred CCCCcccHHHH------HHH-------HHhcCCHHHHHHHHHHHHhC--CCCCChhhHHHHHHHHhccCCHHHH--HHHH
Q 038622 156 FDPDVFTYNSL------ISG-------LCKLGEVEEAVEILNQMILR--DCSPNTITYNTLISTLCKENQVEEA--TELA 218 (587)
Q Consensus 156 ~~~~~~~~~~l------~~~-------~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a--~~~~ 218 (587)
+.-=...|... ++. --+...+..|.++++++... |...+..+ .-..|-.++. .+++
T Consensus 168 m~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~-------vp~~~T~~e~~qv~~W 240 (656)
T KOG1914|consen 168 MHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPA-------VPPKGTKDEIQQVELW 240 (656)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCC-------CCCCCChHHHHHHHHH
Confidence 21111122111 111 11223455666666665422 21111111 0011111111 1122
Q ss_pred HHHHh---C-CCC-CCHhhHHHHHHHHHhcCChHHHHHHHHHHH-HcCCCCCHHhHHHHH-------HHHHccC------
Q 038622 219 RVLTS---K-GIL-PDVCTFNSLIQGLCLTSNFDVAMELFQEMK-TKGCQPDEFTYNMLI-------DSLCSRG------ 279 (587)
Q Consensus 219 ~~~~~---~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~-------~~~~~~~------ 279 (587)
....+ . ++. .+...... ...-.+++.+ -.+..| ..|.... ..+...|
T Consensus 241 ~n~I~wEksNpL~t~~~~~~~~------------Rv~yayeQ~ll~l~~~p--eiWy~~s~yl~~~s~l~~~~~d~~~a~ 306 (656)
T KOG1914|consen 241 KNWIKWEKSNPLRTLDGTMLTR------------RVMYAYEQCLLYLGYHP--EIWYDYSMYLIEISDLLTEKGDVPDAK 306 (656)
T ss_pred HHHHHHHhcCCcccccccHHHH------------HHHHHHHHHHHHHhcCH--HHHHHHHHHHHHhhHHHHHhcccccch
Confidence 11111 1 111 00000000 0000111110 011111 1111111 1111111
Q ss_pred -ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038622 280 -MLEEALKLLKEMESSGCARNVVTYNTLIDGFCK---LKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAA 355 (587)
Q Consensus 280 -~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 355 (587)
..+++..+++.....-...+...+..+...--. .+..+....+++++.......-..+|...+..-.+..-...|.
T Consensus 307 ~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR 386 (656)
T KOG1914|consen 307 SLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAAR 386 (656)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHH
Confidence 134566666665543222233333333322111 1235556666666654432223345666666666666677777
Q ss_pred HHHHHHHHcCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038622 356 QLMDQMIMEGLKP-DKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMK 434 (587)
Q Consensus 356 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 434 (587)
.+|.++.+.+..+ +.....+++..++ .+|..-|.++|+.-.+. ...++......+..+...++-..+..+|+++...
T Consensus 387 ~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 387 KIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 7777777765554 4445555555444 46677777777766554 2223333345566666777777777777777776
Q ss_pred CCCCCh--HhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038622 435 GIVLTP--QAYNPVIQALFRRKRTTEAMRLFREMME 468 (587)
Q Consensus 435 ~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 468 (587)
++.++. .+|..++.--..-|+...++++-++...
T Consensus 465 ~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 465 VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 444332 5777777777777777777776665554
No 109
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=99.14 E-value=9.9e-06 Score=79.10 Aligned_cols=486 Identities=15% Similarity=0.130 Sum_probs=252.4
Q ss_pred HHcCChhhHHHHHHhhccCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHH
Q 038622 31 CKAHQIRPAILMMEEMPGYGLAPDER-TFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDA 109 (587)
Q Consensus 31 ~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 109 (587)
...+++.+|........++. ||.. +...=+-.+.+.|+.++|..+++.....+ ..+..+...+-.+|...|+.++|
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNALYAKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhhHH
Confidence 45677888888888887763 4432 22222334568888888887777766554 33667777788888888889999
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC-C---------HHHH
Q 038622 110 LSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLG-E---------VEEA 179 (587)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~---------~~~a 179 (587)
..+|+++... .|+......+..+|.+.+.+.+-.+.--++-+. ++-++..+-.++......- . ..-|
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 9999888876 566777777778888888777655554444442 2334444444444443321 1 2335
Q ss_pred HHHHHHHHhCC-CCCChhhHHHHHHHHhccCCHHHHHHHHH-HHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 038622 180 VEILNQMILRD-CSPNTITYNTLISTLCKENQVEEATELAR-VLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMK 257 (587)
Q Consensus 180 ~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 257 (587)
.+.++.+...+ .-.+..-......++...|++++|.+++. ...+.-..-+...-+.-+..+...++|.+..++-.++.
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 55566665553 11122223333455566788888888883 33333222233444456667777888888888888887
Q ss_pred HcCCCCCHHhH----HHHHHH---------HHccCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCCHHHHHHHH
Q 038622 258 TKGCQPDEFTY----NMLIDS---------LCSRGMLEEALKLLKEMESSGCARNVV-TYNTLIDGFCKLKRIEEAEEIF 323 (587)
Q Consensus 258 ~~~~~~~~~~~----~~l~~~---------~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~ 323 (587)
..+ +.|-.+| ..++.. +...+..+...+...+..... ...+. +...+-.-+..-|+.+++...|
T Consensus 254 ~k~-~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~-~Rgp~LA~lel~kr~~~~gd~ee~~~~y 331 (932)
T KOG2053|consen 254 EKG-NDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK-SRGPYLARLELDKRYKLIGDSEEMLSYY 331 (932)
T ss_pred HhC-CcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc-ccCcHHHHHHHHHHhcccCChHHHHHHH
Confidence 775 2231111 111111 111223333344333333321 11111 1111222223457777665544
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHh----h---HHHHHHHHHhcC-----CHHHHHH
Q 038622 324 DEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKF----T---YNSLLTYYCRAG-----DIKRAAD 391 (587)
Q Consensus 324 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~---~~~l~~~~~~~~-----~~~~A~~ 391 (587)
-+-. | +...+..=+..|...=..+.-..++...... .++.. . +...+......| +-+.-..
T Consensus 332 ~~kf--g---~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~--~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a 404 (932)
T KOG2053|consen 332 FKKF--G---DKPCCAIDLNHYLGHLNIDQLKSLMSKLVLA--DDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILA 404 (932)
T ss_pred HHHh--C---CCcHhHhhHHHhhccCCHHHHHHHHHHhhcc--CCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHH
Confidence 3321 1 1112222233333333333444444444332 11111 0 111111122222 1222233
Q ss_pred HHHHHH---HCC------CCCCcc---------hHHHHHHHHHhcCCh---HHHHHHHHHHHHcCCCCChHhHHHHHHHH
Q 038622 392 IVQNMT---SNG------CEPDIV---------TYGTLIGGLCKAGRV---EVASKLLRSIQMKGIVLTPQAYNPVIQAL 450 (587)
Q Consensus 392 ~~~~~~---~~~------~~~~~~---------~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 450 (587)
++.+.. +.| +-|+.. +.+.|++.+.+.++. -+|+-+++........ +...-..+++.|
T Consensus 405 ~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~h-nf~~KLlLiriY 483 (932)
T KOG2053|consen 405 YVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPH-NFQTKLLLIRIY 483 (932)
T ss_pred HHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCc-cHHHHHHHHHHH
Confidence 332221 112 222221 234455667776654 4455556665554322 445556778888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHH
Q 038622 451 FRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETL 530 (587)
Q Consensus 451 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 530 (587)
.-.|-+..|.++|+.+--+.+..|...+. +...+...|. +..+...+...+.. +..+..-...++..-++.|.|++-
T Consensus 484 ~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~-~~~~s~~~~~~lkf-y~~~~kE~~eyI~~AYr~g~ySkI 560 (932)
T KOG2053|consen 484 SYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRAETSGR-SSFASNTFNEHLKF-YDSSLKETPEYIALAYRRGAYSKI 560 (932)
T ss_pred HHhcCChhHHHHHHhcchHHhhhccchHH-HHHHHHhccc-chhHHHHHHHHHHH-HhhhhhhhHHHHHHHHHcCchhhh
Confidence 88888888888888775554544544442 2333445566 88888888877753 222222222344445567777776
Q ss_pred HHHHH
Q 038622 531 VELID 535 (587)
Q Consensus 531 ~~~~~ 535 (587)
.++..
T Consensus 561 ~em~~ 565 (932)
T KOG2053|consen 561 PEMLA 565 (932)
T ss_pred HHHHH
Confidence 66553
No 110
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.14 E-value=4.4e-09 Score=83.25 Aligned_cols=114 Identities=11% Similarity=0.023 Sum_probs=95.8
Q ss_pred HHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 038622 425 SKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLE 504 (587)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 504 (587)
..++++.++. . +..+...+..+...|++++|...|..++..+ |.+...+..++.++...|+ +++|+..|+++++
T Consensus 13 ~~~~~~al~~--~--p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~-~~~A~~~y~~Al~ 86 (144)
T PRK15359 13 EDILKQLLSV--D--PETVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKE-YTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHc--C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhh-HHHHHHHHHHHHh
Confidence 3466666663 3 3346677888999999999999999999875 7788888899999999999 9999999999998
Q ss_pred cCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCc
Q 038622 505 RGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDR 546 (587)
Q Consensus 505 ~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 546 (587)
+.| ++.++..++.++...|++++|+..++++++..|.+..
T Consensus 87 --l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~ 127 (144)
T PRK15359 87 --LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADAS 127 (144)
T ss_pred --cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence 456 7899999999999999999999999999999998744
No 111
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.13 E-value=1.7e-08 Score=95.36 Aligned_cols=223 Identities=16% Similarity=0.138 Sum_probs=171.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHH
Q 038622 332 SRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTL 411 (587)
Q Consensus 332 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 411 (587)
||-...-..+...+...|-...|..++++.. .|...+.+|...|+..+|..+..+-++. +|++..|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence 4444455667778888888888888888753 3666778888888888888888887773 5677778777
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCC
Q 038622 412 IGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGP 491 (587)
Q Consensus 412 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 491 (587)
++......-+++|.++.+....+ +-..++....+.++++++.+.++...+.. +....+|..++.+..+.++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek- 534 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEK- 534 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhh-
Confidence 77766666677777776654432 33334444555789999999999988864 6677788888888888888
Q ss_pred HHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC-CchhhhhhhHHHHHHHHHHHHhcch
Q 038622 492 IGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS-DRETSMVRGFLKIRKFQDALATFGD 569 (587)
Q Consensus 492 ~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~ 569 (587)
+..|.+.|.+.+. ..| +...|.++..+|.+.|+..+|...++++++.+..+ ..|.....+....|.+++|++.+++
T Consensus 535 ~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~r 612 (777)
T KOG1128|consen 535 EQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHR 612 (777)
T ss_pred hHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHH
Confidence 9999999999987 567 68889999999999999999999999999988665 3476677778889999999999998
Q ss_pred hhhccCc
Q 038622 570 ILDSRMP 576 (587)
Q Consensus 570 ~~~~~~~ 576 (587)
+.+....
T Consensus 613 ll~~~~~ 619 (777)
T KOG1128|consen 613 LLDLRKK 619 (777)
T ss_pred HHHhhhh
Confidence 8876643
No 112
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.12 E-value=3.8e-09 Score=92.87 Aligned_cols=185 Identities=14% Similarity=0.048 Sum_probs=113.5
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh---HhH
Q 038622 369 DKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCE-P-DIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTP---QAY 443 (587)
Q Consensus 369 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~ 443 (587)
....+..++..+...|+++.|...+++++...+. | ....+..++.++...|++++|...++++.+..+. +. .++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN-HPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCchHHHH
Confidence 4456667777788888888888888887774321 1 1135667778888888888888888888775332 22 245
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 038622 444 NPVIQALFRR--------KRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFY 515 (587)
Q Consensus 444 ~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~ 515 (587)
..++.++... |++++|.+.++++++.. |.+...+..+.... . ... .. .....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~-~----~~~-------~~-------~~~~~ 170 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMD-Y----LRN-------RL-------AGKEL 170 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHH-H----HHH-------HH-------HHHHH
Confidence 6666666654 67778888888887752 33322222111100 0 000 00 01123
Q ss_pred HHHHHHHccCCHhHHHHHHHHHHhcCCCC----CchhhhhhhHHHHHHHHHHHHhcchhhhcc
Q 038622 516 MLAEGLVSLGKEETLVELIDMVMDKAKFS----DRETSMVRGFLKIRKFQDALATFGDILDSR 574 (587)
Q Consensus 516 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 574 (587)
.++..|.+.|++++|+..++++++..|.. +.+..++.++.+.|++++|...++.+....
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 45666777777777777777777776643 246677777777777777777776665544
No 113
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.11 E-value=4.4e-09 Score=88.08 Aligned_cols=152 Identities=11% Similarity=0.120 Sum_probs=124.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCC
Q 038622 412 IGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGP 491 (587)
Q Consensus 412 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 491 (587)
+-.|...|+++.+....+.+.. |.. .+...++.++++..+++.++.+ |.+...|..++..+...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~~--------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~- 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PLH--------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRND- 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----ccc--------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCC-
Confidence 3467788998887555433322 110 1223677899999999999875 8889999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH-HccCC--HhHHHHHHHHHHhcCCCC-CchhhhhhhHHHHHHHHHHHHh
Q 038622 492 IGEAVDFVIEMLERGFLP-EFSSFYMLAEGL-VSLGK--EETLVELIDMVMDKAKFS-DRETSMVRGFLKIRKFQDALAT 566 (587)
Q Consensus 492 ~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~ 566 (587)
+++|...|+++++ +.| ++..+..++.++ ...|+ .++|.++++++++.+|.+ ..+..++..+.+.|++++|+..
T Consensus 89 ~~~A~~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~ 166 (198)
T PRK10370 89 YDNALLAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIEL 166 (198)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999998 456 799999999975 67787 599999999999999987 5688999999999999999999
Q ss_pred cchhhhccCchhh
Q 038622 567 FGDILDSRMPRKT 579 (587)
Q Consensus 567 ~~~~~~~~~~~~~ 579 (587)
|+++++..++.++
T Consensus 167 ~~~aL~l~~~~~~ 179 (198)
T PRK10370 167 WQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHhhCCCCcc
Confidence 9999998877553
No 114
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.10 E-value=1.3e-07 Score=77.71 Aligned_cols=188 Identities=16% Similarity=0.153 Sum_probs=117.4
Q ss_pred cCCHHHHHHHHHHHHHc---C-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHH
Q 038622 313 LKRIEEAEEIFDEMEIQ---G-ISRNSV-TYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIK 387 (587)
Q Consensus 313 ~~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 387 (587)
..+.++..+++..+... + ..++.. .+..++-+....|+.+.|...++++... ++.+..+...-+-.+-..|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchh
Confidence 45677777777766432 1 222322 3444555566677777777777777665 2223333333333455667777
Q ss_pred HHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038622 388 RAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMM 467 (587)
Q Consensus 388 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 467 (587)
+|.++|+.+++.++. |..++-.-+-+.-..|+.-+|++-+....+. +..|.++|..+...|...|++++|.-++++++
T Consensus 104 ~A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 777777777776533 4445555555556667777777777777665 44477777777777777777777777777777
Q ss_pred hcCCCCCHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH
Q 038622 468 EKADPPDALTYKHVFRGLCNGGG--PIGEAVDFVIEMLE 504 (587)
Q Consensus 468 ~~~~~~~~~~~~~l~~~~~~~~~--~~~~A~~~~~~~~~ 504 (587)
-.. |-++..+..++..++-.|+ +.+-|.++|.++++
T Consensus 182 l~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 182 LIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 653 5555666666666555553 25567777777776
No 115
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.10 E-value=1.5e-08 Score=84.01 Aligned_cols=158 Identities=18% Similarity=0.090 Sum_probs=94.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc
Q 038622 374 NSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRR 453 (587)
Q Consensus 374 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 453 (587)
..+...+...|+-+....+........ ..+......++....+.|++..|...++++....+ ++...|+.++-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p-~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP-TDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC-CChhhhhHHHHHHHHc
Confidence 445555556666666655555543321 11333444466666666777777777666666432 2556666666677777
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHH
Q 038622 454 KRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVEL 533 (587)
Q Consensus 454 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 533 (587)
|++++|...|.++++.. +.++...++++..+.-.|+ ++.|..++..+...+ .-+..+..+|+.+....|++++|..+
T Consensus 148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd-~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGD-LEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCC-HHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhh
Confidence 77777777777666652 4455556666666666666 667776666666521 11566666666666667776666665
Q ss_pred HHH
Q 038622 534 IDM 536 (587)
Q Consensus 534 ~~~ 536 (587)
...
T Consensus 225 ~~~ 227 (257)
T COG5010 225 AVQ 227 (257)
T ss_pred ccc
Confidence 544
No 116
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.09 E-value=3.1e-08 Score=87.16 Aligned_cols=189 Identities=11% Similarity=-0.023 Sum_probs=136.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcc--
Q 038622 332 SRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDK---FTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIV-- 406 (587)
Q Consensus 332 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-- 406 (587)
+.....+...+..+...|+++.|...+++++.... .+. ..+..++.++...|++++|...++++++..+. +..
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~ 107 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYP-FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN-HPDAD 107 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCchH
Confidence 44567788888999999999999999999988532 122 46677889999999999999999999986432 222
Q ss_pred -hHHHHHHHHHhc--------CChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH
Q 038622 407 -TYGTLIGGLCKA--------GRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALT 477 (587)
Q Consensus 407 -~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 477 (587)
.+..++.++... |+.++|.+.++++....+. +...+..+..... ... ... ..
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~-------~~~-------~~ 168 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRN-------RLA-------GK 168 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHH-------HHH-------HH
Confidence 466677777765 7899999999999986433 2223222221111 000 000 11
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-CC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCC
Q 038622 478 YKHVFRGLCNGGGPIGEAVDFVIEMLERGF-LP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAK 542 (587)
Q Consensus 478 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 542 (587)
...++..+...|+ +++|+..++++++..- .| .+.++..++.++.+.|++++|...++.+....|
T Consensus 169 ~~~~a~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 169 ELYVARFYLKRGA-YVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHHcCC-hHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 2245666888999 9999999999997421 23 367899999999999999999999999877665
No 117
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.06 E-value=2.2e-08 Score=94.64 Aligned_cols=237 Identities=17% Similarity=0.127 Sum_probs=183.5
Q ss_pred CCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 038622 261 CQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNT 340 (587)
Q Consensus 261 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 340 (587)
.+|-...-..++..+...|-...|..++++.. .|...+.+|...|+..+|..+..+..+. +|++..|..
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~ 462 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCL 462 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHH
Confidence 34555556677888899999999999998765 4677888999999999999998888773 788888988
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCC
Q 038622 341 LIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGR 420 (587)
Q Consensus 341 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 420 (587)
++.......-+++|.++.+..... .-..+.......+++.++.+.|+...+.++- ...+|..++.+..+.++
T Consensus 463 LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEK 534 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhh
Confidence 888877777788888887765432 2222333344578999999999988875332 56788899999999999
Q ss_pred hHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 038622 421 VEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVI 500 (587)
Q Consensus 421 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~ 500 (587)
++.|.+.|.......+. +...|+++..+|.+.|+-.+|...++++++.+ ..+...|.+........|. +++|++.+.
T Consensus 535 ~q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge-~eda~~A~~ 611 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGE-FEDAIKAYH 611 (777)
T ss_pred hHHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhccc-HHHHHHHHH
Confidence 99999999999885332 45899999999999999999999999999986 5566677777777788999 999999999
Q ss_pred HHHHcCCCC-CHHHHHHHHH
Q 038622 501 EMLERGFLP-EFSSFYMLAE 519 (587)
Q Consensus 501 ~~~~~~~~p-~~~~~~~l~~ 519 (587)
++++..... |+.+...+..
T Consensus 612 rll~~~~~~~d~~vl~~iv~ 631 (777)
T KOG1128|consen 612 RLLDLRKKYKDDEVLLIIVR 631 (777)
T ss_pred HHHHhhhhcccchhhHHHHH
Confidence 988532221 4444444433
No 118
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.03 E-value=8.3e-08 Score=79.69 Aligned_cols=165 Identities=17% Similarity=0.162 Sum_probs=115.4
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 038622 52 APDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTL 131 (587)
Q Consensus 52 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 131 (587)
|.|..+ ......+...|+-+....+........ +.+......++....+.|++..|...++++.... ++|...|+.+
T Consensus 64 p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~l 140 (257)
T COG5010 64 PEDLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLL 140 (257)
T ss_pred cchHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHH
Confidence 334455 666667777777777777766655432 4455566667777777888888888887777654 6677778888
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCH
Q 038622 132 VNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQV 211 (587)
Q Consensus 132 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 211 (587)
.-+|.+.|+++.|..-|.+..+.. +-++...+.++..+.-.|+++.|..++....... +.+..+...+.......|++
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~ 218 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDF 218 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCCh
Confidence 888888888888888777777752 2246667777777777788888888777776664 33666677777777777777
Q ss_pred HHHHHHHHHH
Q 038622 212 EEATELARVL 221 (587)
Q Consensus 212 ~~a~~~~~~~ 221 (587)
+.|.++...-
T Consensus 219 ~~A~~i~~~e 228 (257)
T COG5010 219 REAEDIAVQE 228 (257)
T ss_pred HHHHhhcccc
Confidence 7777765543
No 119
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.03 E-value=1.1e-07 Score=78.06 Aligned_cols=206 Identities=15% Similarity=0.087 Sum_probs=159.2
Q ss_pred hcCCHHHHHHHHHHHHHc---C-CCCCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCh
Q 038622 347 KSRRVEDAAQLMDQMIME---G-LKPDKF-TYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRV 421 (587)
Q Consensus 347 ~~~~~~~A~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 421 (587)
...+.++..+++..+... | ..++.. .+..++-+....|+.+-|...++.+...- +.+......-+..+...|.+
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhch
Confidence 357889999999988753 3 444544 45566677788899999999999988763 33445554455667788999
Q ss_pred HHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 038622 422 EVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIE 501 (587)
Q Consensus 422 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~ 501 (587)
++|+++++.+++.++. +..++..-+......|+.-+|++.+.+.++. ++.|...|..+...|...|+ +++|.-.+++
T Consensus 103 ~~A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~-f~kA~fClEE 179 (289)
T KOG3060|consen 103 KEAIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGD-FEKAAFCLEE 179 (289)
T ss_pred hhHHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhH-HHHHHHHHHH
Confidence 9999999999997633 4566666667777889989999999999987 68899999999999999999 9999999999
Q ss_pred HHHcCCCC-CHHHHHHHHHHHHccC---CHhHHHHHHHHHHhcCCCC-CchhhhhhhHHHHH
Q 038622 502 MLERGFLP-EFSSFYMLAEGLVSLG---KEETLVELIDMVMDKAKFS-DRETSMVRGFLKIR 558 (587)
Q Consensus 502 ~~~~~~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 558 (587)
++= +.| ++-.+..++.+++-.| +..-|+++|.++++.+|.+ -.++.+-.+....-
T Consensus 180 ~ll--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la 239 (289)
T KOG3060|consen 180 LLL--IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALA 239 (289)
T ss_pred HHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHH
Confidence 986 467 7888889999887655 5778999999999999944 22444444333333
No 120
>PF13041 PPR_2: PPR repeat family
Probab=99.02 E-value=7.3e-10 Score=69.22 Aligned_cols=50 Identities=40% Similarity=0.736 Sum_probs=45.6
Q ss_pred CCHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHh
Q 038622 18 PDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIE 67 (587)
Q Consensus 18 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 67 (587)
||..+|+.++++|++.|++++|.++|++|.+.|++||..+|+.++.++++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999999999999999999988763
No 121
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.00 E-value=3.5e-07 Score=91.12 Aligned_cols=135 Identities=11% Similarity=0.019 Sum_probs=83.4
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038622 404 DIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFR 483 (587)
Q Consensus 404 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 483 (587)
+...+..|+.+....|..++|..+++.+.+..+. +..++..++..+.+.+++++|+..++++++.+ |.+......++.
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~ 162 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAK 162 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHH
Confidence 4556666666666666666666666666664222 33555666666666666666666666666653 445555555666
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCC
Q 038622 484 GLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKF 543 (587)
Q Consensus 484 ~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 543 (587)
++.+.|+ +++|...|++++.. .| +..++..++.++...|+.++|...|+++++....
T Consensus 163 ~l~~~g~-~~~A~~~y~~~~~~--~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 163 SWDEIGQ-SEQADACFERLSRQ--HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred HHHHhcc-hHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 6666666 66666666666652 34 4566666666666666666666666666655543
No 122
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.99 E-value=3.6e-08 Score=78.06 Aligned_cols=123 Identities=14% Similarity=0.008 Sum_probs=86.9
Q ss_pred HHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 038622 391 DIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKA 470 (587)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 470 (587)
.++++.++. .|+ .+..++..+...|++++|...|+.+....+. +...|..++.++...|++++|+..|++++..+
T Consensus 14 ~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 345555553 233 3555677777888888888888887775433 56777888888888888888888888888764
Q ss_pred CCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHH
Q 038622 471 DPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLV 522 (587)
Q Consensus 471 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 522 (587)
|.+...+..++.++...|+ +++|+..+.++++ ..| ++..+...+.+..
T Consensus 89 -p~~~~a~~~lg~~l~~~g~-~~eAi~~~~~Al~--~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 89 -ASHPEPVYQTGVCLKMMGE-PGLAREAFQTAIK--MSYADASWSEIRQNAQI 137 (144)
T ss_pred -CCCcHHHHHHHHHHHHcCC-HHHHHHHHHHHHH--hCCCChHHHHHHHHHHH
Confidence 6677777777777788888 8888888888887 345 5666665555543
No 123
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.98 E-value=2.9e-07 Score=93.31 Aligned_cols=209 Identities=13% Similarity=0.024 Sum_probs=109.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC-CC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh
Q 038622 52 APDERTFTTLMQGLIEEGNLDGALRIREQMVEHG-CL---VTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFT 127 (587)
Q Consensus 52 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 127 (587)
|.+...|...|......++.+.|++++++++..= +. ....+|.++++.-...|.-+...++|+++.+.- .....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHH
Confidence 3344455566655556666666666666555431 11 111245555555555555555556666655531 11334
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHh
Q 038622 128 YNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCS-PNTITYNTLISTLC 206 (587)
Q Consensus 128 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 206 (587)
|..|...|.+.+.+++|.++++.|.+. +.-....|..++..+.+.++-+.|..++.+++..-.. .........+..-.
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 555566666666666666666666554 2234455555566666666666666666555544111 12333444445555
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 038622 207 KENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPD 264 (587)
Q Consensus 207 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 264 (587)
+.|+.+.+..+|+..+... +.....|+..+..-.+.|+.+.+..+|++++..+..|.
T Consensus 1612 k~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred hcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 5666666666666555542 22455566666666666666666666666665554443
No 124
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.97 E-value=1.7e-07 Score=94.17 Aligned_cols=169 Identities=12% Similarity=0.171 Sum_probs=106.0
Q ss_pred CHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038622 264 DEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLID 343 (587)
Q Consensus 264 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 343 (587)
+...+..++..+...+++++|.++.+...+.. |.....+..++..+.+.++..++..+ .++.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~ 91 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-----------------NLID 91 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-----------------hhhh
Confidence 46677778888878888888888888766653 44455555555566666665544433 2233
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHH
Q 038622 344 GLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEV 423 (587)
Q Consensus 344 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 423 (587)
......++.....++..+... ..+...+..++.+|-+.|+.++|..+|+++++.++. ++.+.+.++..|... ++++
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHH
Confidence 333344453333334444442 224446777778888888888888888888877643 677778888888777 8888
Q ss_pred HHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038622 424 ASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEK 469 (587)
Q Consensus 424 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (587)
|.+++.++... +...+++.++.+++.++...
T Consensus 168 A~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 168 AITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc
Confidence 88887777663 33334555555555555543
No 125
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.96 E-value=3.2e-05 Score=71.26 Aligned_cols=188 Identities=14% Similarity=0.125 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC---CHHHHHHHHHHHHHC-CCCCCcchHHHHHHHHHhcCChHHHHH
Q 038622 351 VEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAG---DIKRAADIVQNMTSN-GCEPDIVTYGTLIGGLCKAGRVEVASK 426 (587)
Q Consensus 351 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~ 426 (587)
.+++..++++.+..-...+..+|..+...--..- ..+.....++++... ...| .-+|..++....+..-+..|..
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~ 387 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARK 387 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHH
Confidence 4567777777765322223334443333221111 255566677766654 2333 3467777888888888999999
Q ss_pred HHHHHHHcCCCCC-hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 038622 427 LLRSIQMKGIVLT-PQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLER 505 (587)
Q Consensus 427 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 505 (587)
+|.++.+.+..+. ......++. |.-.++..-|.++|+--+++ .+.++......+..+...++ -..|..+|++++..
T Consensus 388 iF~kaR~~~r~~hhVfVa~A~mE-y~cskD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNd-d~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 388 IFKKAREDKRTRHHVFVAAALME-YYCSKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLND-DNNARALFERVLTS 464 (656)
T ss_pred HHHHHhhccCCcchhhHHHHHHH-HHhcCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCc-chhHHHHHHHHHhc
Confidence 9999998866652 234444444 44567999999999988876 35555555667777788888 78999999999987
Q ss_pred CCCC--CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCC
Q 038622 506 GFLP--EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAK 542 (587)
Q Consensus 506 ~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 542 (587)
+++| ....|..++..-..-|+...++++-++....-|
T Consensus 465 ~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 465 VLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 6666 467889999888899999999999888776665
No 126
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=2.7e-06 Score=70.80 Aligned_cols=106 Identities=18% Similarity=0.156 Sum_probs=47.5
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC
Q 038622 380 YCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCK----AGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKR 455 (587)
Q Consensus 380 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 455 (587)
+.+..+.+-|.+.++.|... . +..+...|+.++.+ .+....|.-+|+++.++ ..|++.+.+..+.++...|+
T Consensus 147 ~lk~~r~d~A~~~lk~mq~i--d-ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~ 222 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQI--D-EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGR 222 (299)
T ss_pred HHHHHHHHHHHHHHHHHHcc--c-hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcC
Confidence 33444445555555555442 1 23334444444432 22344455555554443 23344444444444555555
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Q 038622 456 TTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGG 490 (587)
Q Consensus 456 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 490 (587)
+++|..+++.++.++ +.++.++.+++-.....|.
T Consensus 223 ~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 223 YEEAESLLEEALDKD-AKDPETLANLIVLALHLGK 256 (299)
T ss_pred HHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCC
Confidence 555555555555443 3344444444444444444
No 127
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.93 E-value=7.4e-07 Score=90.55 Aligned_cols=244 Identities=13% Similarity=0.031 Sum_probs=178.2
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----hhhHHHHHHHHHhcCChHHHHHHHHH
Q 038622 76 RIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPD-----QFTYNTLVNGLCKVGHVKQALEVMDM 150 (587)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~ 150 (587)
+-|++.+..+ |.+...|...+......++.++|+++.++++.. +.+. ...|.++++.-...|.-+...++|++
T Consensus 1445 eDferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1445 EDFERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred HHHHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence 3344454443 677788888888889999999999999988764 2221 23677888877778888888999999
Q ss_pred HHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCC-CC
Q 038622 151 MLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGIL-PD 229 (587)
Q Consensus 151 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~ 229 (587)
+.+. -..-..|..|...|.+.+.+++|.++|+.|.+.- ......|..++..+.++++-+.|..++.+.++.-+. -.
T Consensus 1523 Acqy--cd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eH 1599 (1710)
T KOG1070|consen 1523 ACQY--CDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEH 1599 (1710)
T ss_pred HHHh--cchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhh
Confidence 8874 2124567778888999999999999999998773 356778888999999999889999999888875211 02
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCH--HHHHHHH
Q 038622 230 VCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNV--VTYNTLI 307 (587)
Q Consensus 230 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~ 307 (587)
.......+..-.+.|+.+.+..+|+..+... |-....|..++..-.+.|+.+.++.+|+++...+.++-. ..|...+
T Consensus 1600 v~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwL 1678 (1710)
T KOG1070|consen 1600 VEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWL 1678 (1710)
T ss_pred HHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHH
Confidence 3334444555668899999999999888763 556788999999999999999999999999887755543 3455555
Q ss_pred HHHHccCCHHHHHHHHHH
Q 038622 308 DGFCKLKRIEEAEEIFDE 325 (587)
Q Consensus 308 ~~~~~~~~~~~a~~~~~~ 325 (587)
..--+.|+-..+..+=.+
T Consensus 1679 eyEk~~Gde~~vE~VKar 1696 (1710)
T KOG1070|consen 1679 EYEKSHGDEKNVEYVKAR 1696 (1710)
T ss_pred HHHHhcCchhhHHHHHHH
Confidence 555555665544444333
No 128
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.92 E-value=1.7e-07 Score=93.36 Aligned_cols=135 Identities=13% Similarity=0.108 Sum_probs=121.1
Q ss_pred CCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHH
Q 038622 436 IVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSF 514 (587)
Q Consensus 436 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~ 514 (587)
...+..++..|+....+.|.+++|..+++.+.+.. |.+......++..+.+.++ +++|...+++++.. .| +....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~-~eeA~~~~~~~l~~--~p~~~~~~ 157 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQG-IEAGRAEIELYFSG--GSSSAREI 157 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhcc-HHHHHHHHHHHhhc--CCCCHHHH
Confidence 34468899999999999999999999999999973 5566677888999999999 99999999999984 56 78899
Q ss_pred HHHHHHHHccCCHhHHHHHHHHHHhcCCCC-CchhhhhhhHHHHHHHHHHHHhcchhhhcc
Q 038622 515 YMLAEGLVSLGKEETLVELIDMVMDKAKFS-DRETSMVRGFLKIRKFQDALATFGDILDSR 574 (587)
Q Consensus 515 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 574 (587)
..++.++.+.|++++|..+|++++..+|+. +.+..++..+-..|+.++|...|.++++..
T Consensus 158 ~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 158 LLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 999999999999999999999999988765 568999999999999999999999998765
No 129
>PF13041 PPR_2: PPR repeat family
Probab=98.91 E-value=3.5e-09 Score=66.12 Aligned_cols=49 Identities=51% Similarity=1.009 Sum_probs=26.4
Q ss_pred CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 038622 123 PDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLC 171 (587)
Q Consensus 123 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 171 (587)
||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4455555555555555555555555555555555555555555555543
No 130
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.91 E-value=7.6e-08 Score=76.21 Aligned_cols=116 Identities=16% Similarity=0.175 Sum_probs=93.6
Q ss_pred HHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 038622 427 LLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERG 506 (587)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 506 (587)
.++++....+. +......++..+...|++++|.+.++.+...+ +.+...+..++..+...|+ +++|...++++++.+
T Consensus 5 ~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLGLDSE-QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKE-YEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHcCChh-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcC
Confidence 45566654322 34667788888889999999999999998865 6677788888888888888 999999999988743
Q ss_pred CCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCc
Q 038622 507 FLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDR 546 (587)
Q Consensus 507 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 546 (587)
+.++..+..++.++...|++++|...++++++..|.+..
T Consensus 82 -p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 82 -PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 337888889999999999999999999999999987644
No 131
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.88 E-value=1.3e-06 Score=88.05 Aligned_cols=234 Identities=12% Similarity=0.098 Sum_probs=100.6
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 038622 53 PDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLV 132 (587)
Q Consensus 53 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 132 (587)
.+...+..++..+...|++++|.++.+...+.. |.....|..++..+.+.++++++..+ .+...
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~------------- 92 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--NLIDS------------- 92 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--hhhhh-------------
Confidence 345555566666666666666666666555543 33444444444455555554443333 22111
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHH
Q 038622 133 NGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVE 212 (587)
Q Consensus 133 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 212 (587)
.....++.-..-+...+... ..+..++..++.+|-+.|+.++|..+|++++..+ +.++.+.+.++..+... +++
T Consensus 93 --~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 93 --FSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred --cccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 11111121111111122221 1122244444455555555555555555555444 33444455555554444 555
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHH-----HhcCChHHHHHHHHHHHHc-CCCCCHHhHHHHHHHHHccCChHHHHH
Q 038622 213 EATELARVLTSKGILPDVCTFNSLIQGL-----CLTSNFDVAMELFQEMKTK-GCQPDEFTYNMLIDSLCSRGMLEEALK 286 (587)
Q Consensus 213 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~ 286 (587)
+|.+++.+....-+ +..-|..+...+ ....+.+.-..+.+.+... +..--..++..+-..|...+++++++.
T Consensus 167 KA~~m~~KAV~~~i--~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~ 244 (906)
T PRK14720 167 KAITYLKKAIYRFI--KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIY 244 (906)
T ss_pred HHHHHHHHHHHHHH--hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHH
Confidence 55554444433200 000000000000 0011122222222222221 111123344445556666777777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHH
Q 038622 287 LLKEMESSGCARNVVTYNTLIDGFC 311 (587)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~l~~~~~ 311 (587)
+++.+++.. +.+..+...++.+|.
T Consensus 245 iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 245 ILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHhcC-CcchhhHHHHHHHHH
Confidence 777777765 445555666666665
No 132
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=6.2e-06 Score=68.72 Aligned_cols=255 Identities=15% Similarity=0.130 Sum_probs=168.3
Q ss_pred HHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 038622 273 DSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVE 352 (587)
Q Consensus 273 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 352 (587)
+-+.-.|++..++..-...... +.+...-..+.++|...|.+..... .+.... .+....+..+......-++.+
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhH
Confidence 3444456677666655444332 1333444455667777776554332 222221 333344444444333344433
Q ss_pred HHH-HHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 038622 353 DAA-QLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSI 431 (587)
Q Consensus 353 ~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 431 (587)
.-+ ++.+.+.......+......-+..|...|++++|.+...... +.+....=...+.+..+++-|.+.+++|
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333 334444443333333444444567889999999999887622 3334444456677888999999999999
Q ss_pred HHcCCCCChHhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 038622 432 QMKGIVLTPQAYNPVIQALFR----RKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGF 507 (587)
Q Consensus 432 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~ 507 (587)
.+. . +..+...|+.++.+ .+...+|.-+|+++.++ .+|+..+.+..+.++...|+ +++|..+++.++.+.
T Consensus 164 q~i--d-ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~-~eeAe~lL~eaL~kd- 237 (299)
T KOG3081|consen 164 QQI--D-EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGR-YEEAESLLEEALDKD- 237 (299)
T ss_pred Hcc--c-hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcC-HHHHHHHHHHHHhcc-
Confidence 983 3 55667767766654 45799999999999987 48999999999989999999 999999999999853
Q ss_pred CCCHHHHHHHHHHHHccCCHhHHH-HHHHHHHhcCCCCC
Q 038622 508 LPEFSSFYMLAEGLVSLGKEETLV-ELIDMVMDKAKFSD 545 (587)
Q Consensus 508 ~p~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~ 545 (587)
..+++++.++..+-...|+..++. +.+.++....|..+
T Consensus 238 ~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 238 AKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 448999999999888889876654 55666666667654
No 133
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=1.1e-06 Score=77.72 Aligned_cols=292 Identities=14% Similarity=0.052 Sum_probs=178.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 038622 233 FNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCK 312 (587)
Q Consensus 233 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 312 (587)
.......+.+..++.+|+..+..+++.. +.+..-|..-+..+...|+++++.--.+...+.. +-.........+++..
T Consensus 52 ~k~~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a 129 (486)
T KOG0550|consen 52 AKEEGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLA 129 (486)
T ss_pred HHhhcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhh
Confidence 3344455666666777777777776664 3445555555666666666666665555544432 1122233334444444
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHhhHHHH-HHHHHhcCCHHHHH
Q 038622 313 LKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGL-KPDKFTYNSL-LTYYCRAGDIKRAA 390 (587)
Q Consensus 313 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l-~~~~~~~~~~~~A~ 390 (587)
.++..+|.+.++.- ..+ ....++..++....... +|.-.++..+ ..++...|++++|.
T Consensus 130 ~~~~i~A~~~~~~~---------~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~ 189 (486)
T KOG0550|consen 130 LSDLIEAEEKLKSK---------QAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQ 189 (486)
T ss_pred hHHHHHHHHHhhhh---------hhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHH
Confidence 44544444444310 000 11223333333332211 1333344433 35567788888888
Q ss_pred HHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChH-------------hHHHHHHHHHhcCCHH
Q 038622 391 DIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQ-------------AYNPVIQALFRRKRTT 457 (587)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------------~~~~l~~~~~~~g~~~ 457 (587)
..--...+.+.. +......-+.++...++.+.+...|++.+..+ |+.. .|..-+.-.++.|++.
T Consensus 190 ~ea~~ilkld~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~ 266 (486)
T KOG0550|consen 190 SEAIDILKLDAT-NAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYR 266 (486)
T ss_pred HHHHHHHhcccc-hhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchh
Confidence 888777775332 34444344455566788888888888888743 3321 2333455567889999
Q ss_pred HHHHHHHHHHhcC---CCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHH
Q 038622 458 EAMRLFREMMEKA---DPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVEL 533 (587)
Q Consensus 458 ~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 533 (587)
+|.+.|.+++..+ ..++...|.....+..+.|+ .++|+.--+.+++ ++| -..++..-+.++.-.+++++|.+.
T Consensus 267 ~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgr-l~eaisdc~~Al~--iD~syikall~ra~c~l~le~~e~AV~d 343 (486)
T KOG0550|consen 267 KAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGR-LREAISDCNEALK--IDSSYIKALLRRANCHLALEKWEEAVED 343 (486)
T ss_pred HHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCC-chhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999853 23455566667777788898 9999999999887 556 367778888899999999999999
Q ss_pred HHHHHhcCCCCCchhhhhh
Q 038622 534 IDMVMDKAKFSDRETSMVR 552 (587)
Q Consensus 534 ~~~~~~~~~~~~~~~~~~~ 552 (587)
++++.+.....+....+..
T Consensus 344 ~~~a~q~~~s~e~r~~l~~ 362 (486)
T KOG0550|consen 344 YEKAMQLEKDCEIRRTLRE 362 (486)
T ss_pred HHHHHhhccccchHHHHHH
Confidence 9999887766544444443
No 134
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.74 E-value=4.6e-07 Score=71.70 Aligned_cols=97 Identities=11% Similarity=0.042 Sum_probs=48.4
Q ss_pred hhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 038622 21 STFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGF 100 (587)
Q Consensus 21 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 100 (587)
.....+...+.+.|++++|...|+.+...+ +.++..+..++..+...|++++|...++++...+ +.+...+..++.++
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~ 95 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL 95 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 334444444555555555555555554443 3444555555555555555555555555554443 33444444455555
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 038622 101 CKEGRIEDALSFIQEMVSE 119 (587)
Q Consensus 101 ~~~~~~~~a~~~~~~~~~~ 119 (587)
...|++++|...|+..++.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 96 LALGEPESALKALDLAIEI 114 (135)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 5555555555555555443
No 135
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.72 E-value=0.00038 Score=68.55 Aligned_cols=217 Identities=17% Similarity=0.180 Sum_probs=147.4
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHH--HHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 038622 3 LVETAHADMVSRGIKPDVSTFNILIKA--LCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQ 80 (587)
Q Consensus 3 ~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 80 (587)
.|.+..+.+.+. .||. .|..++.+ +.+.|+.++|..+++.....+ ..|..+...+-..|.+.|+.++|..+|++
T Consensus 27 kal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~ 102 (932)
T KOG2053|consen 27 KALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLDEAVHLYER 102 (932)
T ss_pred HHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 455666666665 3553 33344444 578999999999998887665 44888888888999999999999999999
Q ss_pred HHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC-C---------hHHHHHHHHH
Q 038622 81 MVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVG-H---------VKQALEVMDM 150 (587)
Q Consensus 81 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~---------~~~a~~~~~~ 150 (587)
+.... |+......+..+|.+.+++.+-.+.--++-+. .+.....+-.++..+.+.- . ..-|...++.
T Consensus 103 ~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~ 179 (932)
T KOG2053|consen 103 ANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQK 179 (932)
T ss_pred HHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHH
Confidence 99874 34777888889999998887665554444443 3555666666666555431 1 2235555666
Q ss_pred HHhCC-CCCCcccHHHHHHHHHhcCCHHHHHHHH-HHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCC
Q 038622 151 MLQEG-FDPDVFTYNSLISGLCKLGEVEEAVEIL-NQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGI 226 (587)
Q Consensus 151 ~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 226 (587)
+.+.+ .-.+..-.......+...|++++|..++ ....+.-.+.+...-+.-+..+...+++.+..++..++...+.
T Consensus 180 ~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~ 257 (932)
T KOG2053|consen 180 LLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN 257 (932)
T ss_pred HhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence 66543 1112222333445566789999999999 4444443333444445567778888999999999999888753
No 136
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.71 E-value=2.2e-07 Score=78.87 Aligned_cols=97 Identities=21% Similarity=0.219 Sum_probs=86.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccC
Q 038622 447 IQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLG 525 (587)
Q Consensus 447 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 525 (587)
+.-+...++|++|+..|.++++.. |.|...|-.-..+|.+.|. ++.|++-.+.++. ++| -..+|..|+.+|...|
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~-~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGE-YEDAVKDCESALS--IDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcc-hHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccC
Confidence 445667889999999999999975 7788888888999999999 9999999999998 667 5889999999999999
Q ss_pred CHhHHHHHHHHHHhcCCCCCch
Q 038622 526 KEETLVELIDMVMDKAKFSDRE 547 (587)
Q Consensus 526 ~~~~A~~~~~~~~~~~~~~~~~ 547 (587)
++++|++.|+++++.+|.++.+
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~ 185 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESY 185 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHH
Confidence 9999999999999999998753
No 137
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.69 E-value=4.5e-07 Score=70.15 Aligned_cols=103 Identities=12% Similarity=-0.054 Sum_probs=86.1
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 038622 440 PQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLA 518 (587)
Q Consensus 440 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 518 (587)
.+....++..+...|++++|.++|+-+...+ |-+...|..++.++...|+ +++|+..|.++... .| ++..+.+++
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~-~~~AI~aY~~A~~L--~~ddp~~~~~ag 110 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKH-WGEAIYAYGRAAQI--KIDAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhc--CCCCchHHHHHH
Confidence 3566778888889999999999999988865 6677778888888888888 99999999999984 46 788999999
Q ss_pred HHHHccCCHhHHHHHHHHHHhcCCCCCc
Q 038622 519 EGLVSLGKEETLVELIDMVMDKAKFSDR 546 (587)
Q Consensus 519 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 546 (587)
.++...|+.+.|++.|+.++.....++.
T Consensus 111 ~c~L~lG~~~~A~~aF~~Ai~~~~~~~~ 138 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAVVRICGEVSE 138 (157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHhccChh
Confidence 9999999999999999999887754433
No 138
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.68 E-value=3.9e-07 Score=72.65 Aligned_cols=126 Identities=15% Similarity=0.129 Sum_probs=72.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--HHHHHHH
Q 038622 407 TYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLT---PQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPD--ALTYKHV 481 (587)
Q Consensus 407 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l 481 (587)
.|..+...+ ..++...+...++.+....+. + ......++..+...|++++|...|+.++.....|. ......+
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~-s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPS-SPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344444443 366677776667666665322 2 23344456666677777777777777776531111 1233445
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHH
Q 038622 482 FRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMV 537 (587)
Q Consensus 482 ~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 537 (587)
...+...|+ +++|+..++.... -...+.....+|++|...|++++|+..|+++
T Consensus 92 A~~~~~~~~-~d~Al~~L~~~~~--~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQ-YDEALATLQQIPD--EAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCC-HHHHHHHHHhccC--cchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 566666666 7777777655321 1124555566777777777777777777664
No 139
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.68 E-value=6.8e-07 Score=69.17 Aligned_cols=94 Identities=7% Similarity=-0.036 Sum_probs=50.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 038622 408 YGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCN 487 (587)
Q Consensus 408 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (587)
...++..+...|++++|.++|+.+...++. +..-|..|+.++-..|++++|+..|..+...+ +.++..+...+.++..
T Consensus 38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Confidence 334444445555555555555555553322 33455555555555555555555555555543 4445555555555555
Q ss_pred CCCCHHHHHHHHHHHHH
Q 038622 488 GGGPIGEAVDFVIEMLE 504 (587)
Q Consensus 488 ~~~~~~~A~~~~~~~~~ 504 (587)
.|+ .+.|++.|+.++.
T Consensus 116 lG~-~~~A~~aF~~Ai~ 131 (157)
T PRK15363 116 CDN-VCYAIKALKAVVR 131 (157)
T ss_pred cCC-HHHHHHHHHHHHH
Confidence 555 5555555555554
No 140
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.64 E-value=1.5e-06 Score=79.90 Aligned_cols=126 Identities=22% Similarity=0.291 Sum_probs=103.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 038622 408 YGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCN 487 (587)
Q Consensus 408 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (587)
...++..+...++++.|..+++++.+.. ++....++..+...++-.+|++++.+++... |.+...+...+..+..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~----pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERD----PEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcC----CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 3455666667889999999999998853 3355668888888899999999999999763 6677777777777888
Q ss_pred CCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcC
Q 038622 488 GGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKA 541 (587)
Q Consensus 488 ~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 541 (587)
.++ ++.|+.+.+++++ +.| +...|..|+.+|.+.|++++|+..++.++-..
T Consensus 247 k~~-~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 247 KKK-YELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred cCC-HHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 888 9999999999998 567 78899999999999999999999998877543
No 141
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.64 E-value=1.8e-05 Score=72.10 Aligned_cols=123 Identities=15% Similarity=0.101 Sum_probs=65.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhc
Q 038622 128 YNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCK 207 (587)
Q Consensus 128 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 207 (587)
+......+...|++++|+..++.+... .+-|+.........+...++.++|.+.+++++... |........++.++.+
T Consensus 309 ~YG~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~ 386 (484)
T COG4783 309 QYGRALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLK 386 (484)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHh
Confidence 333344444555666666666655554 12234444444555556666666666666665553 2234445555566666
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHH
Q 038622 208 ENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELF 253 (587)
Q Consensus 208 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 253 (587)
.|++.+|+.++....... +.++..|..+..+|...|+..++....
T Consensus 387 ~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~ 431 (484)
T COG4783 387 GGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLAR 431 (484)
T ss_pred cCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHH
Confidence 666666666555555442 335555666666666666555554433
No 142
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.63 E-value=3.9e-05 Score=70.08 Aligned_cols=147 Identities=18% Similarity=0.157 Sum_probs=103.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC
Q 038622 375 SLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRK 454 (587)
Q Consensus 375 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 454 (587)
.....+...|+++.|...++.++...+ .|+......+..+...++.++|.+.+++++...+. ....+..++.++...|
T Consensus 311 G~A~~~~~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g 388 (484)
T COG4783 311 GRALQTYLAGQYDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGG 388 (484)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcC
Confidence 334445667788888888888777522 24555556677778888888888888888875322 2566677788888888
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHH
Q 038622 455 RTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELI 534 (587)
Q Consensus 455 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 534 (587)
++.+|++.+....... |.++..|..+..+|...|+ ..+|... .+..|+..|++++|+..+
T Consensus 389 ~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~-~~~a~~A------------------~AE~~~~~G~~~~A~~~l 448 (484)
T COG4783 389 KPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGN-RAEALLA------------------RAEGYALAGRLEQAIIFL 448 (484)
T ss_pred ChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCc-hHHHHHH------------------HHHHHHhCCCHHHHHHHH
Confidence 8888888888887764 7777788888888888887 5554332 334466677888888888
Q ss_pred HHHHhcCCC
Q 038622 535 DMVMDKAKF 543 (587)
Q Consensus 535 ~~~~~~~~~ 543 (587)
..+.+....
T Consensus 449 ~~A~~~~~~ 457 (484)
T COG4783 449 MRASQQVKL 457 (484)
T ss_pred HHHHHhccC
Confidence 877776643
No 143
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.63 E-value=4.7e-06 Score=65.22 Aligned_cols=154 Identities=16% Similarity=0.070 Sum_probs=88.8
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHH
Q 038622 380 YCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEA 459 (587)
Q Consensus 380 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 459 (587)
....=|++...+-..+-.. .-|+...-..|+.++...|+..+|...|++...--+.-++.....++++....+++.+|
T Consensus 66 ~~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a 143 (251)
T COG4700 66 LQQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAA 143 (251)
T ss_pred HHHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHH
Confidence 3333344444433333222 34555556666666777777777777776666544444556666666667777777777
Q ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 038622 460 MRLFREMMEKAD-PPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVM 538 (587)
Q Consensus 460 ~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 538 (587)
...+++..+... ..++.....+...+...|+ +.+|...|+.++. .-|++......+..+.++|+.++|..-+..+.
T Consensus 144 ~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~-~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 144 QQTLEDLMEYNPAFRSPDGHLLFARTLAAQGK-YADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHhhcCCccCCCCchHHHHHHHHhcCC-chhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 777776666420 0112223345556666666 6667777777766 45666666666666667776666555444433
No 144
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.62 E-value=3e-05 Score=69.01 Aligned_cols=268 Identities=14% Similarity=0.024 Sum_probs=164.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 038622 58 FTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCK 137 (587)
Q Consensus 58 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 137 (587)
.......+.+..++..|+..+..+++.. |.+...|..-+..+...|+++++.--.+.-++.. +..........+++..
T Consensus 52 ~k~~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a 129 (486)
T KOG0550|consen 52 AKEEGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLA 129 (486)
T ss_pred HHhhcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhh
Confidence 3444556667788888999888888886 5556677777778888888888887776665542 2223344445555555
Q ss_pred cCChHHHHHHHHHHH---------------hCCC-CCCcccHHHH-HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH
Q 038622 138 VGHVKQALEVMDMML---------------QEGF-DPDVFTYNSL-ISGLCKLGEVEEAVEILNQMILRDCSPNTITYNT 200 (587)
Q Consensus 138 ~~~~~~a~~~~~~~~---------------~~~~-~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 200 (587)
.++..+|.+.++... .... +|....+..+ ..++...|+++.|.++--.+++.+ +.+......
T Consensus 130 ~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~v 208 (486)
T KOG0550|consen 130 LSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALYV 208 (486)
T ss_pred hHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHHh
Confidence 555555554444211 1100 1111222222 345566788888888777777665 445666655
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCC-----------HhhHHHHHHHHHhcCChHHHHHHHHHHHHcC---CCCCHH
Q 038622 201 LISTLCKENQVEEATELARVLTSKGILPD-----------VCTFNSLIQGLCLTSNFDVAMELFQEMKTKG---CQPDEF 266 (587)
Q Consensus 201 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~ 266 (587)
-..++.-.++.+.+...+.+.+..++... ...+..-.+-..+.|.+..|.+.|.+.+..+ ..++..
T Consensus 209 rg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nak 288 (486)
T KOG0550|consen 209 RGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAK 288 (486)
T ss_pred cccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHH
Confidence 56666677788888888877776532110 0112222334456777778888887777642 334455
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 038622 267 TYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQ 329 (587)
Q Consensus 267 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 329 (587)
.|...+.+..+.|+.++|+.-.+.+.+.+ +.-...+..-+.++...+++++|.+-++...+.
T Consensus 289 lY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 289 LYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 66667777777777777777777777653 222344555566667777777777777776654
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.60 E-value=3.1e-06 Score=67.52 Aligned_cols=116 Identities=16% Similarity=0.143 Sum_probs=66.4
Q ss_pred cCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCH
Q 038622 453 RKRTTEAMRLFREMMEKADPPD---ALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPE--FSSFYMLAEGLVSLGKE 527 (587)
Q Consensus 453 ~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~ 527 (587)
.++...+...++.+.+.. +.+ ......++..+...|+ +++|...|+.+++....|. +.+...|+.++...|++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~-~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGD-YDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 566666666666666642 222 2233345555666666 7777777777666431121 23445566667777777
Q ss_pred hHHHHHHHHHHhcCCCCCchhhhhhhHHHHHHHHHHHHhcchh
Q 038622 528 ETLVELIDMVMDKAKFSDRETSMVRGFLKIRKFQDALATFGDI 570 (587)
Q Consensus 528 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 570 (587)
++|+..++........+......+.+|...|++++|...|+++
T Consensus 102 d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 102 DEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7777776553333333333555666677777777777666654
No 146
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.58 E-value=6.4e-06 Score=70.71 Aligned_cols=130 Identities=14% Similarity=0.142 Sum_probs=105.9
Q ss_pred hHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhC--CCCHHHHHHH
Q 038622 421 VEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNG--GGPIGEAVDF 498 (587)
Q Consensus 421 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~A~~~ 498 (587)
.+....-++.-+..++. |.+-|..|+..|...|++..|...|.++.+.. ++++..+..++.++... +....++...
T Consensus 138 ~~~l~a~Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 138 MEALIARLETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 34444445555555554 77999999999999999999999999999974 77777777777765443 3346789999
Q ss_pred HHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCchhhhhhhH
Q 038622 499 VIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDRETSMVRGF 554 (587)
Q Consensus 499 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 554 (587)
+++++. .+| +..+...|+..++..|++.+|...++.+++..|.++.+..++...
T Consensus 216 l~~al~--~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ 270 (287)
T COG4235 216 LRQALA--LDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERS 270 (287)
T ss_pred HHHHHh--cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 999998 456 899999999999999999999999999999999999888777543
No 147
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.54 E-value=2.2e-06 Score=79.46 Aligned_cols=99 Identities=16% Similarity=0.128 Sum_probs=78.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHc
Q 038622 445 PVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVS 523 (587)
Q Consensus 445 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 523 (587)
.-+..+...|++++|+.+|.++++.+ +.+...+..++.++...|+ +++|+..++++++ +.| +..++..++.+|..
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~-~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGN-FTEAVADANKAIE--LDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHH
Confidence 34566777888888888888888864 6667777778888888888 8888888888887 445 67788888888888
Q ss_pred cCCHhHHHHHHHHHHhcCCCCCch
Q 038622 524 LGKEETLVELIDMVMDKAKFSDRE 547 (587)
Q Consensus 524 ~g~~~~A~~~~~~~~~~~~~~~~~ 547 (587)
.|++++|+..++++++.+|.+...
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~ 106 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRF 106 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHH
Confidence 888888888888888888876543
No 148
>PF12854 PPR_1: PPR repeat
Probab=98.51 E-value=2e-07 Score=51.92 Aligned_cols=34 Identities=44% Similarity=0.788 Sum_probs=29.1
Q ss_pred CCCCCCHhhHHHHHHHHHHcCChhhHHHHHHhhc
Q 038622 14 RGIKPDVSTFNILIKALCKAHQIRPAILMMEEMP 47 (587)
Q Consensus 14 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 47 (587)
+|++||..+|+.||++|++.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4678899999999999999999999999888873
No 149
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.51 E-value=4.6e-07 Score=76.93 Aligned_cols=100 Identities=18% Similarity=0.229 Sum_probs=88.4
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC-CchhhhhhhHHHH
Q 038622 480 HVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS-DRETSMVRGFLKI 557 (587)
Q Consensus 480 ~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 557 (587)
.-+.-+.+.++ |.+|+..|.++++ +.| |+..|...+.+|.+.|.++.|++-.+.++..+|.. ..|-.++.+|+..
T Consensus 86 ~eGN~~m~~~~-Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~ 162 (304)
T KOG0553|consen 86 NEGNKLMKNKD-YQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLAL 162 (304)
T ss_pred HHHHHHHHhhh-HHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHcc
Confidence 34455677888 9999999999999 677 78888899999999999999999999999999986 4689999999999
Q ss_pred HHHHHHHHhcchhhhccCchhhhhh
Q 038622 558 RKFQDALATFGDILDSRMPRKTFRS 582 (587)
Q Consensus 558 ~~~~~A~~~~~~~~~~~~~~~~~~~ 582 (587)
|++.+|+..|+++++-.|..+++..
T Consensus 163 gk~~~A~~aykKaLeldP~Ne~~K~ 187 (304)
T KOG0553|consen 163 GKYEEAIEAYKKALELDPDNESYKS 187 (304)
T ss_pred CcHHHHHHHHHhhhccCCCcHHHHH
Confidence 9999999999999999987775543
No 150
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.49 E-value=4.2e-06 Score=64.58 Aligned_cols=103 Identities=16% Similarity=0.220 Sum_probs=74.0
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCC-C-CHHHHH
Q 038622 441 QAYNPVIQALFRRKRTTEAMRLFREMMEKADPPD---ALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFL-P-EFSSFY 515 (587)
Q Consensus 441 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~-p-~~~~~~ 515 (587)
.++...+..+...|++++|.+.|.+++... +.+ ...+..++.++...|+ +++|...+++++..... | .+.++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~p~~~~~~~~~~ 80 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY-PKSTYAPNAHYWLGEAYYAQGK-YADAAKAFLAVVKKYPKSPKAPDALL 80 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHCCCCCcccHHHH
Confidence 456677777888888888888888887652 221 3445567777778888 88888888888763211 1 256677
Q ss_pred HHHHHHHccCCHhHHHHHHHHHHhcCCCCC
Q 038622 516 MLAEGLVSLGKEETLVELIDMVMDKAKFSD 545 (587)
Q Consensus 516 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 545 (587)
.++.++.+.|++++|...++++++..|.+.
T Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 81 KLGMSLQELGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHCcCCh
Confidence 888888888888888888888888887653
No 151
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.45 E-value=1.2e-07 Score=67.37 Aligned_cols=79 Identities=20% Similarity=0.384 Sum_probs=34.3
Q ss_pred CCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHH
Q 038622 454 KRTTEAMRLFREMMEKADP-PDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLV 531 (587)
Q Consensus 454 g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 531 (587)
|+++.|+.+++++++.... ++...+..++.++.+.|+ +++|+.++++ .+ ..| +......++.++.+.|++++|+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~-y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGK-YEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTH-HHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCC-HHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 4455555555555554210 122333334445555555 5555555544 22 122 2233344455555555555555
Q ss_pred HHHHH
Q 038622 532 ELIDM 536 (587)
Q Consensus 532 ~~~~~ 536 (587)
+.+++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 55543
No 152
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.44 E-value=3.3e-06 Score=74.74 Aligned_cols=132 Identities=11% Similarity=0.099 Sum_probs=65.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC-CChHhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CC-CCCHH
Q 038622 407 TYGTLIGGLCKAGRVEVASKLLRSIQMK----GIV-LTPQAYNPVIQALFRRKRTTEAMRLFREMMEK----AD-PPDAL 476 (587)
Q Consensus 407 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~ 476 (587)
.|..|+..|.-.|+++.|+..-+.-+.. |-. ....++..++.++.-.|+++.|.+.|+..+.. |- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4445555555556666665543322211 111 11234555666666666666666666655432 10 11223
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHH----cC-CCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 038622 477 TYKHVFRGLCNGGGPIGEAVDFVIEMLE----RG-FLPEFSSFYMLAEGLVSLGKEETLVELIDMVMD 539 (587)
Q Consensus 477 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~----~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 539 (587)
....++..|..... +++|+.+..+-+. .+ ......+++.|+.++...|..++|....+..++
T Consensus 277 scYSLgNtytll~e-~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKE-VQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 33345555555555 6666666555331 11 011344556666666666666666666555443
No 153
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.40 E-value=5.3e-06 Score=61.19 Aligned_cols=97 Identities=19% Similarity=0.230 Sum_probs=51.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038622 443 YNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLV 522 (587)
Q Consensus 443 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 522 (587)
+..++..+...|++++|...++++.+.. +.+...+..++..+...++ +++|.+.++++++.. +.+...+..++.++.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGK-YEEALEDYEKALELD-PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence 3444555555556666666665555542 3333444445555555555 566666666555532 223445555555566
Q ss_pred ccCCHhHHHHHHHHHHhcCC
Q 038622 523 SLGKEETLVELIDMVMDKAK 542 (587)
Q Consensus 523 ~~g~~~~A~~~~~~~~~~~~ 542 (587)
..|++++|...++++.+..|
T Consensus 80 ~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 80 KLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHhHHHHHHHHHHHHccCC
Confidence 66666666666655555443
No 154
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.38 E-value=0.0015 Score=58.21 Aligned_cols=287 Identities=15% Similarity=0.105 Sum_probs=185.6
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHhHHHHH--HHHHccCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHccCCHH
Q 038622 242 LTSNFDVAMELFQEMKTKGCQPDEFTYNMLI--DSLCSRGMLEEALKLLKEMESSGCARNVV--TYNTLIDGFCKLKRIE 317 (587)
Q Consensus 242 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~ 317 (587)
-.||-..|.+.-.+..+. +..|......++ +.-.-.|+++.|.+-|+.|... |... .+..|.-.-.+.|+.+
T Consensus 96 gAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Gare 171 (531)
T COG3898 96 GAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGARE 171 (531)
T ss_pred ccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHH
Confidence 346667776666554432 123333333333 3345578899999999988863 3332 2233333345678888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHhh--HHHHHHH---HHhcCCHHHHHH
Q 038622 318 EAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEG-LKPDKFT--YNSLLTY---YCRAGDIKRAAD 391 (587)
Q Consensus 318 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~--~~~l~~~---~~~~~~~~~A~~ 391 (587)
.|.++-+.....- |.-...+...+...+..|+|+.|+++.+...... +.++..- -..|+.+ -.-..+...|..
T Consensus 172 aAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~ 250 (531)
T COG3898 172 AARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARD 250 (531)
T ss_pred HHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 8888888776653 5556778888888999999999999988766532 2333321 1112211 112235677777
Q ss_pred HHHHHHHCCCCCCc-chHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhc-
Q 038622 392 IVQNMTSNGCEPDI-VTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEK- 469 (587)
Q Consensus 392 ~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 469 (587)
.-.+..+. .|+. ..-..-..++.+.|+..++-.+++.+-+. .|.+..+..+ ...+.|+ .++.-++++.+.
T Consensus 251 ~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~--ePHP~ia~lY--~~ar~gd--ta~dRlkRa~~L~ 322 (531)
T COG3898 251 DALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKA--EPHPDIALLY--VRARSGD--TALDRLKRAKKLE 322 (531)
T ss_pred HHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhc--CCChHHHHHH--HHhcCCC--cHHHHHHHHHHHH
Confidence 77766663 4442 23344577899999999999999999885 4555543322 2344454 344444444332
Q ss_pred CC-CCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc-cCCHhHHHHHHHHHHhcCCCC
Q 038622 470 AD-PPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVS-LGKEETLVELIDMVMDKAKFS 544 (587)
Q Consensus 470 ~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~ 544 (587)
.+ +.+......+..+....|+ +..|..-.+.+.+ ..|....|..|+++-.. .|+-.+++.++-++++...++
T Consensus 323 slk~nnaes~~~va~aAlda~e-~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 323 SLKPNNAESSLAVAEAALDAGE-FSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred hcCccchHHHHHHHHHHHhccc-hHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 12 3445566677777778888 9999998888887 57989999999998764 599999999999998865543
No 155
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.38 E-value=3.8e-06 Score=64.79 Aligned_cols=101 Identities=17% Similarity=0.171 Sum_probs=85.8
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC----Cchh
Q 038622 477 TYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPE----FSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS----DRET 548 (587)
Q Consensus 477 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~ 548 (587)
++...+..+...|+ +++|.+.+.++++.. |+ ...+..++.++.+.|++++|...++.++...|.+ ..+.
T Consensus 4 ~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 80 (119)
T TIGR02795 4 AYYDAALLVLKAGD-YADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALL 80 (119)
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHH
Confidence 45567777888999 999999999999743 42 5678889999999999999999999999988774 2478
Q ss_pred hhhhhHHHHHHHHHHHHhcchhhhccCchhhh
Q 038622 549 SMVRGFLKIRKFQDALATFGDILDSRMPRKTF 580 (587)
Q Consensus 549 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 580 (587)
.++.++.+.|++.+|+..++++++..|.....
T Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 81 KLGMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 88899999999999999999999998765543
No 156
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.38 E-value=1.1e-05 Score=74.39 Aligned_cols=129 Identities=19% Similarity=0.196 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 038622 55 ERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNG 134 (587)
Q Consensus 55 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 134 (587)
......++..+...++++.|+.+++++.+.. +.+...++..+...++-.+|.+++.+.++.. +.+...+..-+..
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~----pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERD----PEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEF 243 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhcC----CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3344556666777788888888888888764 2345557777777888888888888888653 5566666777777
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038622 135 LCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILR 189 (587)
Q Consensus 135 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 189 (587)
+.+.++++.|+++.+++.... +.+..+|..|+.+|...|+++.|+-.++.+.-.
T Consensus 244 Ll~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 888888888888888888762 224568888888888888888888888877543
No 157
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.35 E-value=0.00018 Score=56.72 Aligned_cols=134 Identities=14% Similarity=0.064 Sum_probs=70.9
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CChHhHHH
Q 038622 367 KPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIV-LTPQAYNP 445 (587)
Q Consensus 367 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ 445 (587)
.|+...-..|..+..+.|++.+|...|++...--.-.|......++++....+++..|...++++.+..+. .++.....
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 34555555556666666666666666666554323334555555666666666666666666665554211 12233445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 038622 446 VIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEML 503 (587)
Q Consensus 446 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~ 503 (587)
+++.+...|++.+|...|+.+++. .|+...-......+..+|+ .++|...+....
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr-~~ea~aq~~~v~ 220 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGR-LREANAQYVAVV 220 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcc-hhHHHHHHHHHH
Confidence 556666666666666666666653 3443333334444555555 455554444433
No 158
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=98.32 E-value=2.6e-06 Score=75.38 Aligned_cols=284 Identities=17% Similarity=0.123 Sum_probs=161.4
Q ss_pred HHHHHccCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHH--H--cCC-CCCHHHHHHHH
Q 038622 272 IDSLCSRGMLEEALKLLKEMESSGCARNV----VTYNTLIDGFCKLKRIEEAEEIFDEME--I--QGI-SRNSVTYNTLI 342 (587)
Q Consensus 272 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~--~--~~~-~~~~~~~~~l~ 342 (587)
+.-+++.|+....+.+|+.+++.| ..+. ..|..++.+|.-.+++++|+++...=+ . .|- .........+.
T Consensus 24 GERLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG 102 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG 102 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence 445778888888888888888876 3333 345666777777777888877654311 1 110 01122223334
Q ss_pred HHHHhcCCHHHHHHHHHHHHH----cCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-CcchHHHHHHHH
Q 038622 343 DGLCKSRRVEDAAQLMDQMIM----EGLK-PDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCE-P-DIVTYGTLIGGL 415 (587)
Q Consensus 343 ~~~~~~~~~~~A~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~ 415 (587)
..+--.|.+++|+....+-+. .|-. .....+..+...|...|..- |.+ | +...+..=
T Consensus 103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~------------g~~~pee~g~f~~e---- 166 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCT------------GLEAPEEKGAFNAE---- 166 (639)
T ss_pred chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhccccc------------CCCChhhcccccHH----
Confidence 444445566666555443322 1100 01122333333333333210 110 0 00001000
Q ss_pred HhcCChHHHHHHHHHHHHc----CCC-CChHhHHHHHHHHHhcCCHHHHHHHHHHHHh----cCC-CCCHHHHHHHHHHH
Q 038622 416 CKAGRVEVASKLLRSIQMK----GIV-LTPQAYNPVIQALFRRKRTTEAMRLFREMME----KAD-PPDALTYKHVFRGL 485 (587)
Q Consensus 416 ~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-~~~~~~~~~l~~~~ 485 (587)
....++.|.++|.+-++. |-. -....|-.++..|.-.|+++.|+..-+.-+. .|. ......+..++.++
T Consensus 167 -v~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~h 245 (639)
T KOG1130|consen 167 -VTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCH 245 (639)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhh
Confidence 011234444554433221 100 0124566777778888999999987665443 221 12344567788888
Q ss_pred HhCCCCHHHHHHHHHHHH----HcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCC-------CCchhhhhhh
Q 038622 486 CNGGGPIGEAVDFVIEML----ERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKF-------SDRETSMVRG 553 (587)
Q Consensus 486 ~~~~~~~~~A~~~~~~~~----~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~~~~~~~~ 553 (587)
.-.|+ ++.|.++|+..+ +.|-+. .....+.|++.|.-..++++|+.+..+-+..... --..++++.+
T Consensus 246 iflg~-fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna 324 (639)
T KOG1130|consen 246 IFLGN-FELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNA 324 (639)
T ss_pred hhhcc-cHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 89999 999999999866 333122 4567788999999999999999998875543322 1236788888
Q ss_pred HHHHHHHHHHHHhcchhhhcc
Q 038622 554 FLKIRKFQDALATFGDILDSR 574 (587)
Q Consensus 554 ~~~~~~~~~A~~~~~~~~~~~ 574 (587)
|...|.-++|+......+++.
T Consensus 325 ~~alg~h~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 325 FNALGEHRKALYFAELHLRSS 345 (639)
T ss_pred HHhhhhHHHHHHHHHHHHHHH
Confidence 888999888888777666544
No 159
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.32 E-value=1.3e-06 Score=61.91 Aligned_cols=80 Identities=24% Similarity=0.378 Sum_probs=55.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC-CchhhhhhhHHHHHHHHHHHH
Q 038622 488 GGGPIGEAVDFVIEMLERGFL-PEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS-DRETSMVRGFLKIRKFQDALA 565 (587)
Q Consensus 488 ~~~~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~A~~ 565 (587)
.|+ ++.|+.+++++++.... |+...+..++.+|.+.|++++|+.++++ .+.++.+ +....++.++++.|++++|++
T Consensus 2 ~~~-y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGN-YENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT--HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred Ccc-HHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 455 88888888888864311 1455666678888888888888888888 5555544 445666788888888888888
Q ss_pred hcch
Q 038622 566 TFGD 569 (587)
Q Consensus 566 ~~~~ 569 (587)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7765
No 160
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.32 E-value=0.0036 Score=60.10 Aligned_cols=206 Identities=11% Similarity=0.084 Sum_probs=129.6
Q ss_pred CCCHhhHHHHHHHHHHcCChhhHHHHHHhhccC-CCCC--------CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 038622 17 KPDVSTFNILIKALCKAHQIRPAILMMEEMPGY-GLAP--------DERTFTTLMQGLIEEGNLDGALRIREQMVEHGCL 87 (587)
Q Consensus 17 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 87 (587)
.|.+..|..|..+.+..-.++-|...|-+.... |++. +......=+.+ --|+|++|.++|-.+-+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhh--
Confidence 578888988888888888888888887766542 2110 00111111122 2378888888887776553
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHH
Q 038622 88 VTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEG-FNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSL 166 (587)
Q Consensus 88 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 166 (587)
..+..+.+.|++-.+.++++.--... -..-..+|+.+...++....+++|.+.|...... ...
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~~ 828 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------ENQ 828 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------HhH
Confidence 34556677788877777665321110 0111346888888888888888888888764321 235
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCh
Q 038622 167 ISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNF 246 (587)
Q Consensus 167 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 246 (587)
+.++.+..++++-+.+...+ +.+....-.++..+.+.|.-++|.+.+-+.. .+ ...+..|...++|
T Consensus 829 ~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s---~p------kaAv~tCv~LnQW 894 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRS---LP------KAAVHTCVELNQW 894 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhcc---Cc------HHHHHHHHHHHHH
Confidence 66676666666655544443 4566677788888888898888887664322 11 2344567777788
Q ss_pred HHHHHHHHHH
Q 038622 247 DVAMELFQEM 256 (587)
Q Consensus 247 ~~a~~~~~~~ 256 (587)
.+|.++-+..
T Consensus 895 ~~avelaq~~ 904 (1189)
T KOG2041|consen 895 GEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHhc
Confidence 8887776543
No 161
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.32 E-value=5.1e-05 Score=73.64 Aligned_cols=142 Identities=11% Similarity=0.001 Sum_probs=94.1
Q ss_pred CCcchHHHHHHHHH--hc---CChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc--------CCHHHHHHHHHHHHhc
Q 038622 403 PDIVTYGTLIGGLC--KA---GRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRR--------KRTTEAMRLFREMMEK 469 (587)
Q Consensus 403 ~~~~~~~~l~~~~~--~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~ 469 (587)
.+...|...+++.. .. ++...|..+|+++.+.++. ....+..++.++... .+...+.+...++...
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 34455555444432 22 2356677777777774322 234444444333221 1234555555555543
Q ss_pred -CCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCchh
Q 038622 470 -ADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDRET 548 (587)
Q Consensus 470 -~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 548 (587)
..+.++..+..++-.....|+ +++|...++++++ +.|+..+|..++.++...|++++|...++++...+|..++++
T Consensus 414 ~~~~~~~~~~~ala~~~~~~g~-~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~~ 490 (517)
T PRK10153 414 PELNVLPRIYEILAVQALVKGK-TDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTLY 490 (517)
T ss_pred ccCcCChHHHHHHHHHHHhcCC-HHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchHH
Confidence 124556666666666666788 9999999999998 458888999999999999999999999999999999987643
No 162
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.30 E-value=0.0027 Score=57.79 Aligned_cols=137 Identities=11% Similarity=0.078 Sum_probs=85.3
Q ss_pred HHHcCChhhHHHHHHhhccCCCCCCHHH------HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHH--HHH
Q 038622 30 LCKAHQIRPAILMMEEMPGYGLAPDERT------FTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVH--GFC 101 (587)
Q Consensus 30 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--~~~ 101 (587)
+-+++++.+|.++|.++.+.. ..++.. -+.++++|.. .+.+.....+....+.. + ...|..+.. ...
T Consensus 16 Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~-~--~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF-G--KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc-C--CchHHHHHHHHHHH
Confidence 456899999999999987653 233222 3456666654 45666666666665543 2 333444444 345
Q ss_pred hcCCHHHHHHHHHHHHHC--CCCCC------------hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC----CCcccH
Q 038622 102 KEGRIEDALSFIQEMVSE--GFNPD------------QFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFD----PDVFTY 163 (587)
Q Consensus 102 ~~~~~~~a~~~~~~~~~~--~~~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~ 163 (587)
+.+++.+|++.+...... +..+. ...=+..+..+...|++.+++.+++++...=.+ -+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 778999999988877654 21111 111234567778899999999999888764222 466777
Q ss_pred HHHHHHHH
Q 038622 164 NSLISGLC 171 (587)
Q Consensus 164 ~~l~~~~~ 171 (587)
+.++-.+.
T Consensus 171 d~~vlmls 178 (549)
T PF07079_consen 171 DRAVLMLS 178 (549)
T ss_pred HHHHHHHh
Confidence 76554443
No 163
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.30 E-value=3e-06 Score=57.56 Aligned_cols=65 Identities=18% Similarity=0.280 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccC-CHhHHHHHHHHHHhcCC
Q 038622 475 ALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLG-KEETLVELIDMVMDKAK 542 (587)
Q Consensus 475 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~ 542 (587)
+..|..++..+...|+ +++|+..|+++++. .| ++.++..++.++...| ++++|++.++++++.+|
T Consensus 3 a~~~~~~g~~~~~~~~-~~~A~~~~~~ai~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGD-YEEAIEYFEKAIEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTH-HHHHHHHHHHHHHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4556666667777777 77777777777773 35 5667777777777777 57777777777777665
No 164
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.29 E-value=0.0028 Score=57.70 Aligned_cols=445 Identities=14% Similarity=0.150 Sum_probs=222.3
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCChh-----hH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH--HHH
Q 038622 65 LIEEGNLDGALRIREQMVEHGCLVTNV-----TV-NVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVN--GLC 136 (587)
Q Consensus 65 ~~~~g~~~~A~~~~~~~~~~~~~~~~~-----~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~ 136 (587)
+-+++++.+|..+|.++.+.. ..++. ++ +.++++|. .++.+.....+....+. .| ...|..+.. ...
T Consensus 16 Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHH
Confidence 347899999999999987753 32322 22 33444544 45566666666666554 22 223333333 345
Q ss_pred hcCChHHHHHHHHHHHhC--CCCCC---c---------ccHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCChhhH
Q 038622 137 KVGHVKQALEVMDMMLQE--GFDPD---V---------FTYNSLISGLCKLGEVEEAVEILNQMILRD----CSPNTITY 198 (587)
Q Consensus 137 ~~~~~~~a~~~~~~~~~~--~~~~~---~---------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~ 198 (587)
+.+.+.+|.+.+..-... +..|. . ..-...+.++...|++.+++.+++++...- ...+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 778899999888776654 21111 0 011234567778899999998888876543 33677777
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHc
Q 038622 199 NTLISTLCKENQVEEATELARVLTSK-GILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCS 277 (587)
Q Consensus 199 ~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 277 (587)
+.++-.+.+. .+-++.+. ....-+. |..++-.|.+.=..-++. -| ..+.|.......++....-
T Consensus 171 d~~vlmlsrS--------YfLEl~e~~s~dl~pd-yYemilfY~kki~~~d~~-~Y-----~k~~peeeL~s~imqhlfi 235 (549)
T PF07079_consen 171 DRAVLMLSRS--------YFLELKESMSSDLYPD-YYEMILFYLKKIHAFDQR-PY-----EKFIPEEELFSTIMQHLFI 235 (549)
T ss_pred HHHHHHHhHH--------HHHHHHHhcccccChH-HHHHHHHHHHHHHHHhhc-hH-----HhhCcHHHHHHHHHHHHHh
Confidence 7655544332 22222111 0011111 222222222211000000 00 0112222223333322221
Q ss_pred c--CChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHhcCC
Q 038622 278 R--GMLEEALKLLKEMESSGCARNV-VTYNTLIDGFCKLKRIEEAEEIFDEMEIQGIS----RNSVTYNTLIDGLCKSRR 350 (587)
Q Consensus 278 ~--~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~ 350 (587)
. ....--.++++...+.-+.|+. -+...+..-+.+ +.+++..+.+.+....+. .-..+|..++....+.++
T Consensus 236 ~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~ 313 (549)
T PF07079_consen 236 VPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQ 313 (549)
T ss_pred CCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 1112222333333222222332 223333333333 444444444444332111 112355666666777777
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHHHHH-------HHHH----hcCCHHHHHHHHHHHHHCCCCCCcchHHHH---HHHHH
Q 038622 351 VEDAAQLMDQMIMEGLKPDKFTYNSLL-------TYYC----RAGDIKRAADIVQNMTSNGCEPDIVTYGTL---IGGLC 416 (587)
Q Consensus 351 ~~~A~~~~~~~~~~~~~~~~~~~~~l~-------~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l---~~~~~ 416 (587)
...|.+.+.-+.. ..|+...-..++ ...+ ..-+...=+.+|+.....++. .......+ +.-+-
T Consensus 314 T~~a~q~l~lL~~--ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~lW 390 (549)
T PF07079_consen 314 TEEAKQYLALLKI--LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAKHLW 390 (549)
T ss_pred HHHHHHHHHHHHh--cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHH
Confidence 7777777766554 344433211111 1111 011223334556666554443 22222222 23344
Q ss_pred hcCC-hHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc--------CCHHHHHHHHHHHHhcCCCCC----HHHHHHHHH
Q 038622 417 KAGR-VEVASKLLRSIQMKGIVLTPQAYNPVIQALFRR--------KRTTEAMRLFREMMEKADPPD----ALTYKHVFR 483 (587)
Q Consensus 417 ~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~ 483 (587)
+.|. -++|+.+++.+.+- .+......+.+..+.+. .....-+.+-.-+.+.|++|- ...-+.+..
T Consensus 391 ~~g~~dekalnLLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaD 468 (549)
T PF07079_consen 391 EIGQCDEKALNLLKLILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLAD 468 (549)
T ss_pred hcCCccHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHH
Confidence 5555 88899999988874 33332222222222211 122222222222233466553 233333433
Q ss_pred H--HHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 038622 484 G--LCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMD 539 (587)
Q Consensus 484 ~--~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 539 (587)
+ ++..|+ +.++.-+-.-..+ +.|++.++..+|-++....+|++|...+..++-
T Consensus 469 AEyLysqge-y~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 469 AEYLYSQGE-YHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HHHHHhccc-HHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 3 567888 9999888887777 789999999999999999999999999988654
No 165
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.28 E-value=3.2e-05 Score=71.89 Aligned_cols=104 Identities=14% Similarity=-0.001 Sum_probs=62.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCC
Q 038622 412 IGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGP 491 (587)
Q Consensus 412 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 491 (587)
+..+...|++++|+..|++++...+. +...|..++.++...|++++|+..+++++..+ +.+...+..++.++...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~- 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE- 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC-
Confidence 44455566666666666666665333 44566666666666666666666666666653 4455556666666666666
Q ss_pred HHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 038622 492 IGEAVDFVIEMLERGFLP-EFSSFYMLAEG 520 (587)
Q Consensus 492 ~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~ 520 (587)
+++|+..++++++ +.| +..+...+..+
T Consensus 86 ~~eA~~~~~~al~--l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 86 YQTAKAALEKGAS--LAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence 6666666666666 334 34444444333
No 166
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.28 E-value=3.3e-06 Score=56.45 Aligned_cols=61 Identities=18% Similarity=0.290 Sum_probs=47.9
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC
Q 038622 481 VFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS 544 (587)
Q Consensus 481 l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 544 (587)
++..+...|+ +++|++.++++++. .| ++.++..++.++...|++++|+..++++++..|.+
T Consensus 3 ~a~~~~~~g~-~~~A~~~~~~~l~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 3 LARALYQQGD-YDEAIAAFEQALKQ--DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHHCTH-HHHHHHHHHHHHCC--STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHHcCC-HHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 4556778888 88888888888874 36 67888888888888888888888888888888764
No 167
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.27 E-value=1.1e-05 Score=59.47 Aligned_cols=95 Identities=20% Similarity=0.265 Sum_probs=82.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCC-chhhhhhhHH
Q 038622 478 YKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSD-RETSMVRGFL 555 (587)
Q Consensus 478 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~ 555 (587)
+..++..+...|+ +++|...++++++. .| +...+..++.++...|++++|.+.++++.+..|... .+..++.++.
T Consensus 3 ~~~~a~~~~~~~~-~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 3 LLNLGNLYYKLGD-YDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHhc-HHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Confidence 4556777788898 99999999999984 45 567888999999999999999999999999988774 6788889999
Q ss_pred HHHHHHHHHHhcchhhhccC
Q 038622 556 KIRKFQDALATFGDILDSRM 575 (587)
Q Consensus 556 ~~~~~~~A~~~~~~~~~~~~ 575 (587)
..|++.+|...+.++.+..+
T Consensus 80 ~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 80 KLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHhHHHHHHHHHHHHccCC
Confidence 99999999999999887654
No 168
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.25 E-value=3.5e-05 Score=63.63 Aligned_cols=100 Identities=16% Similarity=0.132 Sum_probs=59.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-C-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 038622 442 AYNPVIQALFRRKRTTEAMRLFREMMEKADPP-D-ALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLA 518 (587)
Q Consensus 442 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~-~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 518 (587)
.+..++..+...|++++|...|+++++....+ + ...+..++..+...|+ +++|+..++++++. .| +...+..++
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~--~p~~~~~~~~lg 113 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGE-HDKALEYYHQALEL--NPKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh--CcccHHHHHHHH
Confidence 45555666666666666666666666532111 1 2345555666666666 66666666666652 34 455555666
Q ss_pred HHHHccCC--------------HhHHHHHHHHHHhcCCCC
Q 038622 519 EGLVSLGK--------------EETLVELIDMVMDKAKFS 544 (587)
Q Consensus 519 ~~~~~~g~--------------~~~A~~~~~~~~~~~~~~ 544 (587)
.++...|+ +++|.+.++++...+|.+
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 66666555 566777777777777654
No 169
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.24 E-value=1.3e-05 Score=71.70 Aligned_cols=135 Identities=13% Similarity=0.101 Sum_probs=87.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038622 407 TYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFR-RKRTTEAMRLFREMMEKADPPDALTYKHVFRGL 485 (587)
Q Consensus 407 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 485 (587)
+|..+++...+.+..+.|..+|.++.+.+ ..+...|...+..-.. .++.+.|.++|+..++. ++.+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 46666677777777778888887777532 2345666666666444 45566688888877776 466667777777777
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCC
Q 038622 486 CNGGGPIGEAVDFVIEMLERGFLPE---FSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSD 545 (587)
Q Consensus 486 ~~~~~~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 545 (587)
...++ .+.|..+|++++.. +.++ ...|...+..-.+.|+.+.+..+.+++.+.-|...
T Consensus 81 ~~~~d-~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 81 IKLND-INNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHTT--HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHhCc-HHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 77777 77788888877753 3332 24666677777777777777777777777766643
No 170
>PF12854 PPR_1: PPR repeat
Probab=98.21 E-value=2.3e-06 Score=47.67 Aligned_cols=32 Identities=53% Similarity=1.000 Sum_probs=17.4
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHHH
Q 038622 120 GFNPDQFTYNTLVNGLCKVGHVKQALEVMDMM 151 (587)
Q Consensus 120 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 151 (587)
|+.||..+|+.++.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34555555555555555555555555555544
No 171
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.20 E-value=2.6e-06 Score=57.83 Aligned_cols=66 Identities=14% Similarity=0.280 Sum_probs=60.2
Q ss_pred CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC-CchhhhhhhHHHHH-HHHHHHHhcchhhhccC
Q 038622 510 EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS-DRETSMVRGFLKIR-KFQDALATFGDILDSRM 575 (587)
Q Consensus 510 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~~ 575 (587)
++..+..+|..+...|++++|+..|+++++.+|.. ..+..++.++...| ++.+|++.|+++++.+|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 46788999999999999999999999999999987 45899999999999 89999999999988654
No 172
>PRK15331 chaperone protein SicA; Provisional
Probab=98.18 E-value=7.5e-05 Score=58.35 Aligned_cols=96 Identities=9% Similarity=0.044 Sum_probs=76.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038622 442 AYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGL 521 (587)
Q Consensus 442 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 521 (587)
.....+.-+...|++++|..+|.-+.-.+ +-+...+..++.++...++ +++|+..|..+...+ ..|+......+.+|
T Consensus 39 ~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~-y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~ 115 (165)
T PRK15331 39 GLYAHAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQ-FQKACDLYAVAFTLL-KNDYRPVFFTGQCQ 115 (165)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcc-cCCCCccchHHHHH
Confidence 44566677788999999999999888765 6667777777777777777 999999999888643 23666678889999
Q ss_pred HccCCHhHHHHHHHHHHhc
Q 038622 522 VSLGKEETLVELIDMVMDK 540 (587)
Q Consensus 522 ~~~g~~~~A~~~~~~~~~~ 540 (587)
...|+.+.|+..|+.+++.
T Consensus 116 l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 116 LLMRKAAKARQCFELVNER 134 (165)
T ss_pred HHhCCHHHHHHHHHHHHhC
Confidence 9999999999999998884
No 173
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.13 E-value=0.00073 Score=58.88 Aligned_cols=185 Identities=9% Similarity=0.012 Sum_probs=109.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhh---HHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCh-hh
Q 038622 53 PDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVT---VNVLVHGFCKEGRIEDALSFIQEMVSEGF-NPDQ-FT 127 (587)
Q Consensus 53 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-~~ 127 (587)
.++..+...+..+...|++++|...|+.+.... |.+... ...++.++.+.++++.|...+++.++... .|+. .+
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence 456666677777888999999999999998874 434433 35677889999999999999999988631 1111 12
Q ss_pred HHHHHHHHHhcC---------------C---hHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038622 128 YNTLVNGLCKVG---------------H---VKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILR 189 (587)
Q Consensus 128 ~~~l~~~~~~~~---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 189 (587)
+..++......+ + ..+|...|+.+++. -|+..- ..+|...+..+...
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S~y-------------a~~A~~rl~~l~~~ 173 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNSQY-------------TTDATKRLVFLKDR 173 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCChh-------------HHHHHHHHHHHHHH
Confidence 333332211111 2 24566777777775 344321 22333222222211
Q ss_pred CCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhC--CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 038622 190 DCSPNTITYNTLISTLCKENQVEEATELARVLTSK--GILPDVCTFNSLIQGLCLTSNFDVAMELFQEMK 257 (587)
Q Consensus 190 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 257 (587)
-...-..++..|.+.|.+..|..-++.+.+. +.+........+..+|...|..++|..+...+.
T Consensus 174 ----la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 ----LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred ----HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 0111124556677777777777777776654 122234455666677777777777776665443
No 174
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=98.13 E-value=5.8e-05 Score=67.54 Aligned_cols=131 Identities=9% Similarity=0.027 Sum_probs=91.3
Q ss_pred hhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 038622 21 STFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIE-EGNLDGALRIREQMVEHGCLVTNVTVNVLVHG 99 (587)
Q Consensus 21 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 99 (587)
.+|..+++...+.+..+.|..+|.++.+.+ ..+..+|...+..-.. .++.+.|..+|+...+. .+.+...|...+..
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 467788888888888888888888887543 3455666666666444 56666688888888776 46677778888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCh---hhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 038622 100 FCKEGRIEDALSFIQEMVSEGFNPDQ---FTYNTLVNGLCKVGHVKQALEVMDMMLQE 154 (587)
Q Consensus 100 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 154 (587)
+...|+.+.|+.+|++.+.. ++++. ..|..++..-.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888888888888888765 23322 36777777777778888888887777764
No 175
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.13 E-value=3e-06 Score=56.64 Aligned_cols=61 Identities=15% Similarity=0.197 Sum_probs=55.2
Q ss_pred HHHHHHHccCCHhHHHHHHHHHHhcCCCC-CchhhhhhhHHHHHHHHHHHHhcchhhhccCc
Q 038622 516 MLAEGLVSLGKEETLVELIDMVMDKAKFS-DRETSMVRGFLKIRKFQDALATFGDILDSRMP 576 (587)
Q Consensus 516 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 576 (587)
.++..+.+.|++++|+..++++++..|.+ +.+..++.++.+.|++++|+..|+++++..|.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 47889999999999999999999999986 56899999999999999999999999987764
No 176
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.11 E-value=7.7e-05 Score=61.37 Aligned_cols=101 Identities=17% Similarity=0.096 Sum_probs=66.3
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHH
Q 038622 441 QAYNPVIQALFRRKRTTEAMRLFREMMEKADPP--DALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYML 517 (587)
Q Consensus 441 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l 517 (587)
..+..++..+...|++++|+..|++++.....+ ...++..++..+...|+ +++|+..++++++. .| ....+..+
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~-~~eA~~~~~~Al~~--~~~~~~~~~~l 112 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGE-HTKALEYYFQALER--NPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh--CcCcHHHHHHH
Confidence 456677777777888888888888887642111 22456677777777777 88888888888763 44 45556666
Q ss_pred HHHHH-------ccCCHh-------HHHHHHHHHHhcCCCC
Q 038622 518 AEGLV-------SLGKEE-------TLVELIDMVMDKAKFS 544 (587)
Q Consensus 518 ~~~~~-------~~g~~~-------~A~~~~~~~~~~~~~~ 544 (587)
+.++. ..|+++ +|..+++++....|.+
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 66666 666666 4455555566666644
No 177
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=0.00026 Score=61.12 Aligned_cols=116 Identities=12% Similarity=0.095 Sum_probs=80.0
Q ss_pred hhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC---CHHHHHHH
Q 038622 36 IRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEG---RIEDALSF 112 (587)
Q Consensus 36 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~ 112 (587)
++..+.-++.-++.+ |.|.+.|..++..|...|+++.|...|.++.+.. +.++..+..++.++.... ...++..+
T Consensus 138 ~~~l~a~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 138 MEALIARLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 344444445555554 6677777777777777788888877777777765 566777777776655442 34577777
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 038622 113 IQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQE 154 (587)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 154 (587)
|+++++.+ +-++.+...+...+...|++.+|...|+.|++.
T Consensus 216 l~~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 216 LRQALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 77777764 556667777777777778888888888777775
No 178
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.08 E-value=0.00018 Score=54.00 Aligned_cols=95 Identities=21% Similarity=0.157 Sum_probs=54.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC---CHHHHHHH
Q 038622 443 YNPVIQALFRRKRTTEAMRLFREMMEKADPPD--ALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP---EFSSFYML 517 (587)
Q Consensus 443 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p---~~~~~~~l 517 (587)
....++++-..|+.++|+.+|++++..|.... ...+..++..+...|+ +++|...+++.+... +. +......+
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~-~deA~~~L~~~~~~~-p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGR-YDEALALLEEALEEF-PDDELNAALRVFL 81 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHC-CCccccHHHHHHH
Confidence 34555666666666666666666666553332 2344455666666666 666666666666531 11 22333445
Q ss_pred HHHHHccCCHhHHHHHHHHHHh
Q 038622 518 AEGLVSLGKEETLVELIDMVMD 539 (587)
Q Consensus 518 ~~~~~~~g~~~~A~~~~~~~~~ 539 (587)
+-++...|+.++|++++-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 5566666666666666655443
No 179
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.08 E-value=8.8e-05 Score=72.01 Aligned_cols=143 Identities=13% Similarity=0.019 Sum_probs=103.9
Q ss_pred CCCChHhHHHHHHHHHh--c---CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHH
Q 038622 436 IVLTPQAYNPVIQALFR--R---KRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGG-------PIGEAVDFVIEML 503 (587)
Q Consensus 436 ~~~~~~~~~~l~~~~~~--~---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~~A~~~~~~~~ 503 (587)
.+.+..+|..++++... . ++...|+.+|+++++.+ |.....+..+..++..... +...+.+..+++.
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 44567788877766443 2 23779999999999974 4445555544443322211 1345555566655
Q ss_pred HcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCchhhhhhhHHHHHHHHHHHHhcchhhhccCchhh
Q 038622 504 ERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDRETSMVRGFLKIRKFQDALATFGDILDSRMPRKT 579 (587)
Q Consensus 504 ~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 579 (587)
.....| ++.++..++-.+...|++++|...++++++.+|....+..++.++...|+.++|+..|.++...++..+.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 432233 6788888888888899999999999999999996566788889999999999999999999998877553
No 180
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.06 E-value=2.9e-05 Score=67.91 Aligned_cols=104 Identities=13% Similarity=0.139 Sum_probs=78.7
Q ss_pred hHhHHHHHHH-HHhcCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CCC-CHHH
Q 038622 440 PQAYNPVIQA-LFRRKRTTEAMRLFREMMEKADPPD---ALTYKHVFRGLCNGGGPIGEAVDFVIEMLERG-FLP-EFSS 513 (587)
Q Consensus 440 ~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~-~~p-~~~~ 513 (587)
...+...+.. ....|++++|+..|+.+++.. |.+ +..+..++..+...|+ +++|...|+++++.. -.| .+++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-P~s~~a~~A~y~LG~~y~~~g~-~~~A~~~f~~vv~~yP~s~~~~dA 219 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKY-PDSTYQPNANYWLGQLNYNKGK-KDDAAYYFASVVKNYPKSPKAADA 219 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCcchHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCCCCcchhHH
Confidence 3333344433 466789999999999999863 322 3466778888888888 999999999998642 112 4778
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHhcCCCCC
Q 038622 514 FYMLAEGLVSLGKEETLVELIDMVMDKAKFSD 545 (587)
Q Consensus 514 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 545 (587)
+..++.++...|++++|...|+++++..|.++
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 88889999999999999999999999888764
No 181
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.04 E-value=0.0001 Score=60.61 Aligned_cols=95 Identities=12% Similarity=-0.047 Sum_probs=57.6
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038622 405 IVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVL--TPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVF 482 (587)
Q Consensus 405 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 482 (587)
...+..++..+...|++++|...++++......+ ...++..++.++...|++++|+..+++++... +.....+..++
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3445666666667777777777777776542222 12466777777777777777777777777652 33344455555
Q ss_pred HHHH-------hCCCCHHHHHHHHHH
Q 038622 483 RGLC-------NGGGPIGEAVDFVIE 501 (587)
Q Consensus 483 ~~~~-------~~~~~~~~A~~~~~~ 501 (587)
..+. ..|+ +++|...+.+
T Consensus 114 ~i~~~~~~~~~~~g~-~~~A~~~~~~ 138 (168)
T CHL00033 114 VICHYRGEQAIEQGD-SEIAEAWFDQ 138 (168)
T ss_pred HHHHHhhHHHHHccc-HHHHHHHHHH
Confidence 5555 5666 6644444443
No 182
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.04 E-value=0.0086 Score=53.56 Aligned_cols=249 Identities=13% Similarity=0.127 Sum_probs=139.3
Q ss_pred hcCChHHHHHHHHHHHHcCCCCCHHh--HHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 038622 242 LTSNFDVAMELFQEMKTKGCQPDEFT--YNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEA 319 (587)
Q Consensus 242 ~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 319 (587)
-.|+++.|.+-|+.|... |.... ...+.-.-.+.|..+.|..+-+..-... +.-.......+...+..|+++.|
T Consensus 132 ~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~A 207 (531)
T COG3898 132 LEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGA 207 (531)
T ss_pred hcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHH
Confidence 446666666666666542 22111 1112222234566666666666555443 33344555666666667777777
Q ss_pred HHHHHHHHHcC-CCCCHHH--HHHHHHH--H-HhcCCHHHHHHHHHHHHHcCCCCCHh-hHHHHHHHHHhcCCHHHHHHH
Q 038622 320 EEIFDEMEIQG-ISRNSVT--YNTLIDG--L-CKSRRVEDAAQLMDQMIMEGLKPDKF-TYNSLLTYYCRAGDIKRAADI 392 (587)
Q Consensus 320 ~~~~~~~~~~~-~~~~~~~--~~~l~~~--~-~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~ 392 (587)
+++.+.-.... +.++..- -..++.+ . .-..+...|...-.+..+ +.||.. .-.....++.+.|+..++-.+
T Consensus 208 lkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~i 285 (531)
T COG3898 208 LKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKI 285 (531)
T ss_pred HHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhH
Confidence 77666543321 1121110 0111111 1 112345556666555555 455543 223345678888999999999
Q ss_pred HHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCC-hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 038622 393 VQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMK-GIVLT-PQAYNPVIQALFRRKRTTEAMRLFREMMEKA 470 (587)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 470 (587)
++.+-+..+.|+ +.. +..+.+.|+ .+..-+++..+. ..+|+ .+....+..+....|++..|..--+.+.+.
T Consensus 286 lE~aWK~ePHP~--ia~--lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~- 358 (531)
T COG3898 286 LETAWKAEPHPD--IAL--LYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE- 358 (531)
T ss_pred HHHHHhcCCChH--HHH--HHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh-
Confidence 998887644443 222 222334444 344444443322 23444 466677788888889998888888877763
Q ss_pred CCCCHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHc
Q 038622 471 DPPDALTYKHVFRGLCN-GGGPIGEAVDFVIEMLER 505 (587)
Q Consensus 471 ~~~~~~~~~~l~~~~~~-~~~~~~~A~~~~~~~~~~ 505 (587)
.|....|..+...-.. .|+ -.++...+.++++.
T Consensus 359 -~pres~~lLlAdIeeAetGD-qg~vR~wlAqav~A 392 (531)
T COG3898 359 -APRESAYLLLADIEEAETGD-QGKVRQWLAQAVKA 392 (531)
T ss_pred -CchhhHHHHHHHHHhhccCc-hHHHHHHHHHHhcC
Confidence 6777777777666443 377 88888888888863
No 183
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.03 E-value=8e-05 Score=67.05 Aligned_cols=170 Identities=11% Similarity=0.079 Sum_probs=103.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCcchHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCC--hH
Q 038622 372 TYNSLLTYYCRAGDIKRAADIVQNMTSN----GCE-PDIVTYGTLIGGLCKAGRVEVASKLLRSIQMK---GIVLT--PQ 441 (587)
Q Consensus 372 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~--~~ 441 (587)
.|...+..|...+++++|...|.+.... +-. .....|...+.+|.+. ++++|...++++... .-.++ ..
T Consensus 37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~ 115 (282)
T PF14938_consen 37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAK 115 (282)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHH
T ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 5667777788888888888888876542 111 0123444445555444 888888888877654 11222 24
Q ss_pred hHHHHHHHHHhc-CCHHHHHHHHHHHHhc----CCCCC--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-----
Q 038622 442 AYNPVIQALFRR-KRTTEAMRLFREMMEK----ADPPD--ALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP----- 509 (587)
Q Consensus 442 ~~~~l~~~~~~~-g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p----- 509 (587)
.+..++..|... |++++|++.|+++.+. + .+. ...+..++..+...|+ +++|++.|++........
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~-y~~A~~~~e~~~~~~l~~~l~~~ 193 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGR-YEEAIEIYEEVAKKCLENNLLKY 193 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHTCCCHCTTGH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHhhcccccch
Confidence 566777777777 7888888888888763 1 111 2345566667777787 888888888877532221
Q ss_pred CH-HHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC
Q 038622 510 EF-SSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS 544 (587)
Q Consensus 510 ~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 544 (587)
+. ..+...+-++...|+...|...+++.....|.-
T Consensus 194 ~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 194 SAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 11 233445556677788888888888887777654
No 184
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.02 E-value=0.016 Score=55.99 Aligned_cols=187 Identities=17% Similarity=0.087 Sum_probs=93.0
Q ss_pred ChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHH----------HHHhcC
Q 038622 35 QIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVH----------GFCKEG 104 (587)
Q Consensus 35 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~----------~~~~~~ 104 (587)
.++.|.++.++ .|.++.|..++......-.++.|...|-+.... +.......|.. .-.-.|
T Consensus 678 gledA~qfiEd------nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g 748 (1189)
T KOG2041|consen 678 GLEDAIQFIED------NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYG 748 (1189)
T ss_pred chHHHHHHHhc------CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhc
Confidence 34555554443 578889988887776666677777666555432 11111111111 122235
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCcccHHHHHHHHHhcCCHHHHHHHH
Q 038622 105 RIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEG-FDPDVFTYNSLISGLCKLGEVEEAVEIL 183 (587)
Q Consensus 105 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 183 (587)
++++|.+++-++-+++ ..+..+.+.|++-...++++.--... -..-...+..++..+.....|+.|.+.|
T Consensus 749 ~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY 819 (1189)
T KOG2041|consen 749 EFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYY 819 (1189)
T ss_pred chhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666665554431 23444455566655555544321100 0001234556666666666666666666
Q ss_pred HHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHH
Q 038622 184 NQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELF 253 (587)
Q Consensus 184 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 253 (587)
...... ...+.++.+..++++-+.+.+.+ +.+....-.+...+...|.-++|.+.|
T Consensus 820 ~~~~~~---------e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 820 SYCGDT---------ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred Hhccch---------HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHH
Confidence 543211 23345555555555544443332 224444455555566666666655554
No 185
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.01 E-value=0.00016 Score=63.34 Aligned_cols=82 Identities=13% Similarity=0.107 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC----CchhhhhhhHHHHHHHHHH
Q 038622 492 IGEAVDFVIEMLERGFLPE----FSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS----DRETSMVRGFLKIRKFQDA 563 (587)
Q Consensus 492 ~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~A 563 (587)
+++|+..|+.+++. .|+ +.+++.+|.+|+..|++++|+..|+++++..|++ +.+..++.++...|+.++|
T Consensus 159 y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A 236 (263)
T PRK10803 159 QDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKA 236 (263)
T ss_pred HHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHH
Confidence 45555555554442 121 2344445555555555555555555544444432 2233344444444555555
Q ss_pred HHhcchhhhccC
Q 038622 564 LATFGDILDSRM 575 (587)
Q Consensus 564 ~~~~~~~~~~~~ 575 (587)
...|+++++..|
T Consensus 237 ~~~~~~vi~~yP 248 (263)
T PRK10803 237 KAVYQQVIKKYP 248 (263)
T ss_pred HHHHHHHHHHCc
Confidence 555554444443
No 186
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.00 E-value=9e-06 Score=54.99 Aligned_cols=56 Identities=20% Similarity=0.332 Sum_probs=43.6
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC
Q 038622 486 CNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS 544 (587)
Q Consensus 486 ~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 544 (587)
...|+ +++|++.++++++. .| +..++..++.+|.+.|++++|.+.+++++...|++
T Consensus 2 l~~~~-~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 2 LKQGD-YDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HHTTH-HHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred hhccC-HHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 35666 88888888888874 35 77888888888888888888888888888888875
No 187
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.00 E-value=0.00045 Score=57.03 Aligned_cols=92 Identities=11% Similarity=0.068 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 038622 54 DERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLV--TNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTL 131 (587)
Q Consensus 54 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 131 (587)
....+..++..+...|++++|...|+++++....+ ....+..++.++.+.|++++|...++++++.. +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 34456667777777778888887777777653222 13466777777777788888888777777652 3345556666
Q ss_pred HHHHHhcCChHHHHH
Q 038622 132 VNGLCKVGHVKQALE 146 (587)
Q Consensus 132 ~~~~~~~~~~~~a~~ 146 (587)
+..+...|+...+..
T Consensus 113 g~~~~~~g~~~~a~~ 127 (172)
T PRK02603 113 AVIYHKRGEKAEEAG 127 (172)
T ss_pred HHHHHHcCChHhHhh
Confidence 667766666544443
No 188
>PRK15331 chaperone protein SicA; Provisional
Probab=97.98 E-value=7.8e-05 Score=58.27 Aligned_cols=92 Identities=15% Similarity=-0.034 Sum_probs=81.4
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCC-chhhhhhhHHH
Q 038622 479 KHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSD-RETSMVRGFLK 556 (587)
Q Consensus 479 ~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~ 556 (587)
...+..+...|+ +++|..+|.-+.- +.| ++..+..|+.++...+++++|+..|..+...+++++ +.++.+.||+.
T Consensus 41 Y~~Ay~~y~~Gk-~~eA~~~F~~L~~--~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~ 117 (165)
T PRK15331 41 YAHAYEFYNQGR-LDEAETFFRFLCI--YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLL 117 (165)
T ss_pred HHHHHHHHHCCC-HHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHH
Confidence 345556789999 9999999999887 456 889999999999999999999999999998887654 47999999999
Q ss_pred HHHHHHHHHhcchhhhc
Q 038622 557 IRKFQDALATFGDILDS 573 (587)
Q Consensus 557 ~~~~~~A~~~~~~~~~~ 573 (587)
.|+...|...|..+++.
T Consensus 118 l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 118 MRKAAKARQCFELVNER 134 (165)
T ss_pred hCCHHHHHHHHHHHHhC
Confidence 99999999999999884
No 189
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.98 E-value=0.0025 Score=55.58 Aligned_cols=61 Identities=13% Similarity=0.085 Sum_probs=29.7
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHccCCHHHHHHHHHHHHHc
Q 038622 268 YNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVT---YNTLIDGFCKLKRIEEAEEIFDEMEIQ 329 (587)
Q Consensus 268 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~ 329 (587)
+...+..+...|++++|++.|+.+.... |.+... ...++.++.+.+++++|...+++..+.
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 3334444455555555555555555432 222211 133445555555555555555555544
No 190
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.98 E-value=0.017 Score=54.99 Aligned_cols=135 Identities=10% Similarity=0.028 Sum_probs=96.3
Q ss_pred CCHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHH
Q 038622 18 PDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLV 97 (587)
Q Consensus 18 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 97 (587)
.+...|..|+.---...+.+.+..++..++..- |.--..|...+..-.+.|..+.+..+|++.+.. +|.+...|....
T Consensus 43 ~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~ky-Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 43 LDFDAWTTLIQENDSIEDVDALREVYDIFLSKY-PLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYL 120 (577)
T ss_pred hcccchHHHHhccCchhHHHHHHHHHHHHHhhC-ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHH
Confidence 355677777655555555566667777776542 333445677777777889999999999999875 577888887766
Q ss_pred HHHH-hcCCHHHHHHHHHHHHHC-CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 038622 98 HGFC-KEGRIEDALSFIQEMVSE-GF-NPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQE 154 (587)
Q Consensus 98 ~~~~-~~~~~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 154 (587)
..+. ..|+.+.....|+.+... |. -.+...|...+..-..++++.....+|++.++.
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 6544 458888888888888764 21 123346788888778888999999999998874
No 191
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.97 E-value=0.00014 Score=65.51 Aligned_cols=200 Identities=15% Similarity=0.047 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--C-CC--HhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CC
Q 038622 335 SVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGL--K-PD--KFTYNSLLTYYCRAGDIKRAADIVQNMTSN----GCE-PD 404 (587)
Q Consensus 335 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~-~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~-~~ 404 (587)
...|...+..|...+++++|...|.++..... . +. ...|.....++.+. ++++|+..++++... |-. .-
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~a 113 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQA 113 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 34677777888889999999999988865211 1 11 22455555555555 999999999887753 211 11
Q ss_pred cchHHHHHHHHHhc-CChHHHHHHHHHHHHc---CCCCC--hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--C---
Q 038622 405 IVTYGTLIGGLCKA-GRVEVASKLLRSIQMK---GIVLT--PQAYNPVIQALFRRKRTTEAMRLFREMMEKADP--P--- 473 (587)
Q Consensus 405 ~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~--- 473 (587)
...+..++..|... |++++|++.|+++.+. .-.+. ...+..++..+...|++++|+++|++....... .
T Consensus 114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~ 193 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKY 193 (282)
T ss_dssp HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccch
Confidence 34677788888888 8999999999988765 11111 245677888899999999999999998875221 1
Q ss_pred CH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHccCCHhHHHHHHHHHHh
Q 038622 474 DA-LTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFS------SFYMLAEGLVSLGKEETLVELIDMVMD 539 (587)
Q Consensus 474 ~~-~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~ 539 (587)
+. ..+...+-++...|+ .-.|...+++... ..|... ....|+.++ ..|+.+.....+...-.
T Consensus 194 ~~~~~~l~a~l~~L~~~D-~v~A~~~~~~~~~--~~~~F~~s~E~~~~~~l~~A~-~~~D~e~f~~av~~~d~ 262 (282)
T PF14938_consen 194 SAKEYFLKAILCHLAMGD-YVAARKALERYCS--QDPSFASSREYKFLEDLLEAY-EEGDVEAFTEAVAEYDS 262 (282)
T ss_dssp HHHHHHHHHHHHHHHTT--HHHHHHHHHHHGT--TSTTSTTSHHHHHHHHHHHHH-HTT-CCCHHHHCHHHTT
T ss_pred hHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHH-HhCCHHHHHHHHHHHcc
Confidence 11 122233335566777 8899999988876 456632 222333333 34555555555544333
No 192
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.96 E-value=0.014 Score=53.35 Aligned_cols=432 Identities=12% Similarity=0.069 Sum_probs=222.4
Q ss_pred CCCHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHH
Q 038622 17 KPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVL 96 (587)
Q Consensus 17 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 96 (587)
|-|...|-.|+..+..++.+++..+.++++..-- |-=+.+|...+.+-....++.....+|.+++... .+...|...
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pf-p~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~--l~ldLW~lY 115 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPF-PIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS--LNLDLWMLY 115 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCC-ccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh--ccHhHHHHH
Confidence 7788999999999999999999999999987542 4456688888888778889999999999998764 345566555
Q ss_pred HHHHHhcC-----C-HHHHHHHHHHHHH-CCCCCC-hhhHHHHHHHHH---------hcCChHHHHHHHHHHHhCCCCCC
Q 038622 97 VHGFCKEG-----R-IEDALSFIQEMVS-EGFNPD-QFTYNTLVNGLC---------KVGHVKQALEVMDMMLQEGFDPD 159 (587)
Q Consensus 97 ~~~~~~~~-----~-~~~a~~~~~~~~~-~~~~~~-~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~ 159 (587)
+.-..+.+ + -....+.|+-.+. .++.|- ...|+..+..+- .+.+.+..+..|.+++...+..-
T Consensus 116 l~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nl 195 (660)
T COG5107 116 LEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNL 195 (660)
T ss_pred HHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccH
Confidence 44333222 1 1122233333333 233333 334555444322 23345566667777776422110
Q ss_pred cccHHHH------HHHHH---hcC----CHHHHHHHHHHHHhC--CCC----CChhhHHH-----------HHHHHhccC
Q 038622 160 VFTYNSL------ISGLC---KLG----EVEEAVEILNQMILR--DCS----PNTITYNT-----------LISTLCKEN 209 (587)
Q Consensus 160 ~~~~~~l------~~~~~---~~g----~~~~a~~~~~~~~~~--~~~----~~~~~~~~-----------l~~~~~~~~ 209 (587)
...|... +.... -.| -+-.|...++++... |.. .+..+++. ++..-...|
T Consensus 196 eklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~ 275 (660)
T COG5107 196 EKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENG 275 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCC
Confidence 1122111 00000 011 133445555554321 111 11111111 111110000
Q ss_pred -----C-HH-HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChH
Q 038622 210 -----Q-VE-EATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLE 282 (587)
Q Consensus 210 -----~-~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 282 (587)
+ .. ..--++++.... +.-.+..|.-....+...+|-+.|+....... +..+.....+...|.-.++-+
T Consensus 276 l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~----~~spsL~~~lse~yel~nd~e 350 (660)
T COG5107 276 LKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGI----EMSPSLTMFLSEYYELVNDEE 350 (660)
T ss_pred cccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcc----cCCCchheeHHHHHhhcccHH
Confidence 0 00 000011111111 11122222222223334444445544433222 222222223333343334444
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHH---ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038622 283 EALKLLKEMESSGCARNVVTYNTLIDGFC---KLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMD 359 (587)
Q Consensus 283 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 359 (587)
.....|+.+... ...-...+.+-. ..|+++...+++-.-. ..-..+|...+....+..-.+.|..+|-
T Consensus 351 ~v~~~fdk~~q~-----L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~----~k~t~v~C~~~N~v~r~~Gl~aaR~~F~ 421 (660)
T COG5107 351 AVYGCFDKCTQD-----LKRKYSMGESESASKVDNNFEYSKELLLKRI----NKLTFVFCVHLNYVLRKRGLEAARKLFI 421 (660)
T ss_pred HHhhhHHHHHHH-----HHHHHhhhhhhhhccccCCccccHHHHHHHH----hhhhhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 444444433221 000000000000 0122322222211111 1123345556666667777889999999
Q ss_pred HHHHcC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchH-HHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 038622 360 QMIMEG-LKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTY-GTLIGGLCKAGRVEVASKLLRSIQMKGIV 437 (587)
Q Consensus 360 ~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 437 (587)
++.+.+ ..++...+++++..++ .|++..|..+|+.-... .||...| ...+..+...++-..|..+|+....+ +.
T Consensus 422 k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~ 497 (660)
T COG5107 422 KLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETSVER-LE 497 (660)
T ss_pred HHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HH
Confidence 999887 5567777888887554 67889999999877664 3454444 44556677889999999999976654 22
Q ss_pred CC--hHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038622 438 LT--PQAYNPVIQALFRRKRTTEAMRLFREMMEK 469 (587)
Q Consensus 438 ~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (587)
.+ ...|..++.--..-|+...+..+=+++...
T Consensus 498 ~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 498 KTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 22 357888888888889999888888888874
No 193
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.94 E-value=0.02 Score=54.58 Aligned_cols=118 Identities=9% Similarity=0.089 Sum_probs=71.1
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHH-hcCCHHHHHHHH
Q 038622 105 RIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLC-KLGEVEEAVEIL 183 (587)
Q Consensus 105 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~ 183 (587)
+.+.+...+..++.. .|.--.-|...+..-.+.|..+.+.++|++.++. ++.+...|.....-+. ..|+.+.....|
T Consensus 60 ~~~~~r~~y~~fL~k-yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~f 137 (577)
T KOG1258|consen 60 DVDALREVYDIFLSK-YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDLF 137 (577)
T ss_pred HHHHHHHHHHHHHhh-CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 345556666666654 1222334556666666777777777777777764 4555555555444333 356666777777
Q ss_pred HHHHhC-CCC-CChhhHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 038622 184 NQMILR-DCS-PNTITYNTLISTLCKENQVEEATELARVLTSK 224 (587)
Q Consensus 184 ~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 224 (587)
+.+... |.. .+...|...+..-..++++.....+|+++++.
T Consensus 138 e~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 138 ERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 776654 111 13445666677767777777777777777764
No 194
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.93 E-value=0.0011 Score=49.86 Aligned_cols=94 Identities=27% Similarity=0.246 Sum_probs=52.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CHHHHHHHH
Q 038622 408 YGTLIGGLCKAGRVEVASKLLRSIQMKGIVLT--PQAYNPVIQALFRRKRTTEAMRLFREMMEKADPP---DALTYKHVF 482 (587)
Q Consensus 408 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~ 482 (587)
...++.++-..|+.++|+.+|++....|+... ...+..++..+...|++++|..++++..... |. +......+.
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLA 82 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHH
Confidence 34455556666666666666666666554432 2355556666666666666666666666541 21 222222333
Q ss_pred HHHHhCCCCHHHHHHHHHHHH
Q 038622 483 RGLCNGGGPIGEAVDFVIEML 503 (587)
Q Consensus 483 ~~~~~~~~~~~~A~~~~~~~~ 503 (587)
-++...|+ .++|++.+-.++
T Consensus 83 l~L~~~gr-~~eAl~~~l~~l 102 (120)
T PF12688_consen 83 LALYNLGR-PKEALEWLLEAL 102 (120)
T ss_pred HHHHHCCC-HHHHHHHHHHHH
Confidence 34555666 666666665554
No 195
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.92 E-value=0.016 Score=52.89 Aligned_cols=459 Identities=11% Similarity=0.067 Sum_probs=221.8
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 038622 41 LMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEG 120 (587)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 120 (587)
++=+++... |.|..+|..++.-+-.+|.+++..++++++..- .|.-+.+|...+.+-...+++.....+|.+.+..
T Consensus 30 rLRerIkdN--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k- 105 (660)
T COG5107 30 RLRERIKDN--PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK- 105 (660)
T ss_pred HHHHHhhcC--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh-
Confidence 444444433 788999999999999999999999999999764 4667788888888888889999999999999886
Q ss_pred CCCChhhHHHHHHHHHhcCCh------HHHHHHHHHHHh-CCCCCCc-ccHHHHHH---HHHhcCCH------HHHHHHH
Q 038622 121 FNPDQFTYNTLVNGLCKVGHV------KQALEVMDMMLQ-EGFDPDV-FTYNSLIS---GLCKLGEV------EEAVEIL 183 (587)
Q Consensus 121 ~~~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~-~~~~~~~-~~~~~l~~---~~~~~g~~------~~a~~~~ 183 (587)
..+...|...+....+.... ....+.|+-... .++.|.. ..|...+. ..-..|.+ +.....|
T Consensus 106 -~l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y 184 (660)
T COG5107 106 -SLNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGY 184 (660)
T ss_pred -hccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 34566677666654444321 122334444443 2344432 23333322 22223333 3344445
Q ss_pred HHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHc--CC
Q 038622 184 NQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTK--GC 261 (587)
Q Consensus 184 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~ 261 (587)
.+++..-+..-...|. +++.-+.-+.++..+.+.-+ ...-+..|...++++... |.
T Consensus 185 ~ral~tP~~nleklW~----------dy~~fE~e~N~~TarKfvge------------~sp~ym~ar~~yqe~~nlt~Gl 242 (660)
T COG5107 185 MRALQTPMGNLEKLWK----------DYENFELELNKITARKFVGE------------TSPIYMSARQRYQEIQNLTRGL 242 (660)
T ss_pred HHHHcCccccHHHHHH----------HHHHHHHHHHHHHHHHHhcc------------cCHHHHHHHHHHHHHHHHhccc
Confidence 5544321110001111 11111111111110000000 001122333333333221 10
Q ss_pred ----CCCHHh-----------HHHHHHHHHcc------CChHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHH
Q 038622 262 ----QPDEFT-----------YNMLIDSLCSR------GMLEEA-LKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEA 319 (587)
Q Consensus 262 ----~~~~~~-----------~~~l~~~~~~~------~~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 319 (587)
+.+..+ |...+..-... +...+- --+++++... ++.....|..-..-+...++-+.|
T Consensus 243 ~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~a 321 (660)
T COG5107 243 SVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKA 321 (660)
T ss_pred cccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHH
Confidence 111111 22222211111 111111 1112222221 123334444444444555666666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh---cCCHHHHHHHHHHH
Q 038622 320 EEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCR---AGDIKRAADIVQNM 396 (587)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~ 396 (587)
+....... +..+.....+...|.-..+-+.....|+++.+. ...-...+..-.. .|+++.-.+++-.-
T Consensus 322 l~tv~rg~----~~spsL~~~lse~yel~nd~e~v~~~fdk~~q~-----L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr 392 (660)
T COG5107 322 LKTVERGI----EMSPSLTMFLSEYYELVNDEEAVYGCFDKCTQD-----LKRKYSMGESESASKVDNNFEYSKELLLKR 392 (660)
T ss_pred HHHHHhcc----cCCCchheeHHHHHhhcccHHHHhhhHHHHHHH-----HHHHHhhhhhhhhccccCCccccHHHHHHH
Confidence 66554432 222222223344444445555555555554431 0000000000000 12222111111111
Q ss_pred HHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH
Q 038622 397 TSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIV-LTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDA 475 (587)
Q Consensus 397 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 475 (587)
+. .=...|...+....+..-.+.|.++|-++.+.++. ++...++.++. +...|++.-|.++|+--+.. .+.+.
T Consensus 393 ~~----k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E-~~~~~d~~ta~~ifelGl~~-f~d~~ 466 (660)
T COG5107 393 IN----KLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIE-YYATGDRATAYNIFELGLLK-FPDST 466 (660)
T ss_pred Hh----hhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHH-HHhcCCcchHHHHHHHHHHh-CCCch
Confidence 11 01233445555556666777777888777776633 22334444444 33456777777777776664 23344
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC
Q 038622 476 LTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPE--FSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS 544 (587)
Q Consensus 476 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 544 (587)
......+..+...++ -..|..+|+..+++ +..+ ...|..++.--..-|+...+..+-+++.+.-|..
T Consensus 467 ~y~~kyl~fLi~ind-e~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 467 LYKEKYLLFLIRIND-EENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHHHHHHHHHhCc-HHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 444445555666666 67777788776653 2222 4566666666677777777777777777766654
No 196
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.91 E-value=0.0025 Score=54.12 Aligned_cols=48 Identities=15% Similarity=0.126 Sum_probs=32.8
Q ss_pred HHHHHHHccCCHhHHHHHHHHHHhcCCCCC----chhhhhhhHHHHHHHHHH
Q 038622 516 MLAEGLVSLGKEETLVELIDMVMDKAKFSD----RETSMVRGFLKIRKFQDA 563 (587)
Q Consensus 516 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~A 563 (587)
.++..|.+.|++..|+..++.+++.-|... ....++.+|.+.|....|
T Consensus 146 ~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 146 YIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 366778888888888888888888777753 356666777777766643
No 197
>PRK11906 transcriptional regulator; Provisional
Probab=97.91 E-value=0.00048 Score=63.57 Aligned_cols=84 Identities=13% Similarity=-0.075 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHH
Q 038622 457 TEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELID 535 (587)
Q Consensus 457 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 535 (587)
.+|.++.+++++.+ +.|+.....++.+....++ ++.|...|+++.. +.| ...++...++.+.-.|+.++|.+.++
T Consensus 321 ~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~-~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 321 QKALELLDYVSDIT-TVDGKILAIMGLITGLSGQ-AKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcc-hhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34444444444443 4444444444444444444 4555555555444 234 24444444444444555555555555
Q ss_pred HHHhcCCCC
Q 038622 536 MVMDKAKFS 544 (587)
Q Consensus 536 ~~~~~~~~~ 544 (587)
++++.+|..
T Consensus 397 ~alrLsP~~ 405 (458)
T PRK11906 397 KSLQLEPRR 405 (458)
T ss_pred HHhccCchh
Confidence 555444443
No 198
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.87 E-value=6.1e-05 Score=51.72 Aligned_cols=60 Identities=18% Similarity=0.176 Sum_probs=47.5
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCC
Q 038622 483 RGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSD 545 (587)
Q Consensus 483 ~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 545 (587)
..+...++ +++|.+.++++++. .| ++..+...+.++.+.|++++|.+.++++++..|++.
T Consensus 3 ~~~~~~~~-~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~ 63 (73)
T PF13371_consen 3 QIYLQQED-YEEALEVLERALEL--DPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP 63 (73)
T ss_pred HHHHhCCC-HHHHHHHHHHHHHh--CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence 34566777 88888888888874 45 677888888888888888888888888888888654
No 199
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.86 E-value=1.7e-05 Score=53.60 Aligned_cols=61 Identities=13% Similarity=0.316 Sum_probs=53.2
Q ss_pred HHccCCHhHHHHHHHHHHhcCCCC-CchhhhhhhHHHHHHHHHHHHhcchhhhccCchhhhh
Q 038622 521 LVSLGKEETLVELIDMVMDKAKFS-DRETSMVRGFLKIRKFQDALATFGDILDSRMPRKTFR 581 (587)
Q Consensus 521 ~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 581 (587)
+.+.|++++|++.++++++..|.+ +.+..++.+|.+.|++++|...++++....+....+.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 62 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQ 62 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 357899999999999999999987 5688999999999999999999999999998755443
No 200
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=0.00024 Score=63.72 Aligned_cols=96 Identities=11% Similarity=0.167 Sum_probs=67.3
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC-CchhhhhhhHH
Q 038622 477 TYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS-DRETSMVRGFL 555 (587)
Q Consensus 477 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~ 555 (587)
+++++..++.+.+. +.+|+....+.++.+ +++..+++.-+.+|...|+++.|+..|+++++..|.+ ++...++.+--
T Consensus 259 ~~lNlA~c~lKl~~-~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 259 CHLNLAACYLKLKE-YKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HhhHHHHHHHhhhh-HHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 35566666777777 888888888888753 4478888888888888888888888888888888877 34555665544
Q ss_pred HHHHHHHH-HHhcchhhhcc
Q 038622 556 KIRKFQDA-LATFGDILDSR 574 (587)
Q Consensus 556 ~~~~~~~A-~~~~~~~~~~~ 574 (587)
+...+.+. .+.|.++....
T Consensus 337 k~~~~~~kekk~y~~mF~k~ 356 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFAKL 356 (397)
T ss_pred HHHHHHHHHHHHHHHHhhcc
Confidence 44444433 55565555443
No 201
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.79 E-value=0.00064 Score=57.99 Aligned_cols=103 Identities=16% Similarity=0.189 Sum_probs=80.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCCC-CHHHHHHHH
Q 038622 443 YNPVIQALFRRKRTTEAMRLFREMMEKAD--PPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLER-GFLP-EFSSFYMLA 518 (587)
Q Consensus 443 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~-~~~p-~~~~~~~l~ 518 (587)
....+..+...|++..|...|...++... .-.+..+.+++.+++..|+ +++|...|..+.+. +-.| .++++..|+
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~-y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGD-YEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhccc-chHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 34445556677889999999999998621 1123345568889999999 99999999998864 2223 488999999
Q ss_pred HHHHccCCHhHHHHHHHHHHhcCCCCCc
Q 038622 519 EGLVSLGKEETLVELIDMVMDKAKFSDR 546 (587)
Q Consensus 519 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 546 (587)
.+..+.|+.++|...|+++++.-|..+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 9999999999999999999999998754
No 202
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=0.019 Score=48.52 Aligned_cols=131 Identities=14% Similarity=0.107 Sum_probs=82.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcC-----CCCChHhHHHHH
Q 038622 373 YNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKG-----IVLTPQAYNPVI 447 (587)
Q Consensus 373 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~ 447 (587)
.+.++.++.-.+.+.-....+.+.++.+.+.++.....+++.-.+.||.+.|..+|+++.+.. +...........
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 445566666667777777777777776555566666777777777777777777777665442 221222233344
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 038622 448 QALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLER 505 (587)
Q Consensus 448 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 505 (587)
..+..++++.+|.+.+.+.+..+ +.++...+.-+-++.-.|+ ..+|++.++.+++.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~-l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGK-LKDALKQLEAMVQQ 315 (366)
T ss_pred hheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHH-HHHHHHHHHHHhcc
Confidence 45556677777777777777664 4555555544444555666 77777777777763
No 203
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.75 E-value=4.4e-05 Score=43.30 Aligned_cols=33 Identities=42% Similarity=0.775 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHhhccCCCCCC
Q 038622 22 TFNILIKALCKAHQIRPAILMMEEMPGYGLAPD 54 (587)
Q Consensus 22 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 54 (587)
+|+.++++|++.|++++|.++|++|.+.|++||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888887776
No 204
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.72 E-value=0.0054 Score=52.09 Aligned_cols=61 Identities=18% Similarity=0.104 Sum_probs=26.1
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 038622 269 NMLIDSLCSRGMLEEALKLLKEMESSG--CARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQ 329 (587)
Q Consensus 269 ~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 329 (587)
...+..+...|++.+|+..|+.+.... .+....+...++.++.+.|+++.|...+++....
T Consensus 9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 9 YQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334444445555555555555554431 0111223334444555555555555555554443
No 205
>PRK11906 transcriptional regulator; Provisional
Probab=97.72 E-value=0.006 Score=56.62 Aligned_cols=132 Identities=14% Similarity=0.019 Sum_probs=86.3
Q ss_pred CChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHH
Q 038622 419 GRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDF 498 (587)
Q Consensus 419 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~ 498 (587)
.+..+|.+..+++.+.+.. |+.+...++.+....++++.|...|+++...+ |.....+...+..+...|+ .++|.+.
T Consensus 318 ~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~-~~~a~~~ 394 (458)
T PRK11906 318 LAAQKALELLDYVSDITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEK-IEEARIC 394 (458)
T ss_pred HHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCC-HHHHHHH
Confidence 3456667777777776544 67777778887788888888888888888864 5556667777777778888 8888888
Q ss_pred HHHHHHcCCCCC---HHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCchhhhhhhHHHHHHH
Q 038622 499 VIEMLERGFLPE---FSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDRETSMVRGFLKIRKF 560 (587)
Q Consensus 499 ~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (587)
++++++ ++|. ........+.|+..+ .++|+++|-+-.+ ++....++...++.+++
T Consensus 395 i~~alr--LsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 452 (458)
T PRK11906 395 IDKSLQ--LEPRRRKAVVIKECVDMYVPNP-LKNNIKLYYKETE----SESHRVIIDNILKLKQL 452 (458)
T ss_pred HHHHhc--cCchhhHHHHHHHHHHHHcCCc-hhhhHHHHhhccc----cccchhhHHHHHHHHHH
Confidence 888887 4562 222333334566554 6778877765333 23333444444444443
No 206
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.72 E-value=0.0015 Score=50.09 Aligned_cols=93 Identities=13% Similarity=0.045 Sum_probs=49.5
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCc----hhhhhhhHHHH
Q 038622 484 GLCNGGGPIGEAVDFVIEMLERG-FLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDR----ETSMVRGFLKI 557 (587)
Q Consensus 484 ~~~~~~~~~~~A~~~~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 557 (587)
...+.|+ +++|++.|+.+...- ..| ...+-..|+.+|++.|++++|+..+++.++..|.++- ++..+.+++..
T Consensus 19 ~~l~~~~-Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~ 97 (142)
T PF13512_consen 19 EALQKGN-YEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQ 97 (142)
T ss_pred HHHHhCC-HHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence 3444555 556655555555431 111 3444455555566666666666666666665555421 23333333333
Q ss_pred HH---------------HHHHHHhcchhhhccCch
Q 038622 558 RK---------------FQDALATFGDILDSRMPR 577 (587)
Q Consensus 558 ~~---------------~~~A~~~~~~~~~~~~~~ 577 (587)
.. ..+|...|++++...|..
T Consensus 98 ~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S 132 (142)
T PF13512_consen 98 DEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNS 132 (142)
T ss_pred hhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCC
Confidence 33 667777777777776544
No 207
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.68 E-value=9.1e-05 Score=50.85 Aligned_cols=66 Identities=12% Similarity=0.168 Sum_probs=58.4
Q ss_pred HHHHHHccCCHhHHHHHHHHHHhcCCCCC-chhhhhhhHHHHHHHHHHHHhcchhhhccCchhhhhh
Q 038622 517 LAEGLVSLGKEETLVELIDMVMDKAKFSD-RETSMVRGFLKIRKFQDALATFGDILDSRMPRKTFRS 582 (587)
Q Consensus 517 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 582 (587)
|..+|.+.+++++|++.+++++..+|.+. .+...+.++.+.|++.+|...|+++++..|.+.+...
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 35678999999999999999999999874 4888999999999999999999999999987766543
No 208
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.68 E-value=0.00047 Score=58.76 Aligned_cols=99 Identities=17% Similarity=0.209 Sum_probs=84.0
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC----Cchhh
Q 038622 477 TYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP---EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS----DRETS 549 (587)
Q Consensus 477 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~ 549 (587)
.|+.-+ .+...|+ +.+|...|...++.. +. .+.++++|+.+++.+|++++|...|..+.+..|+. |....
T Consensus 144 ~Y~~A~-~~~ksgd-y~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAAL-DLYKSGD-YAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHH-HHHHcCC-HHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 444433 5678899 999999999999853 22 47889999999999999999999999999988875 45788
Q ss_pred hhhhHHHHHHHHHHHHhcchhhhccCchh
Q 038622 550 MVRGFLKIRKFQDALATFGDILDSRMPRK 578 (587)
Q Consensus 550 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 578 (587)
++.+....|+-++|+..|.++...+|..+
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 99999999999999999999999887654
No 209
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.64 E-value=6.8e-05 Score=42.13 Aligned_cols=33 Identities=33% Similarity=0.555 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHHcCChhhHHHHHHhhccCCCCC
Q 038622 21 STFNILIKALCKAHQIRPAILMMEEMPGYGLAP 53 (587)
Q Consensus 21 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 53 (587)
.+|+.++.+|.+.|+++.|..+|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777655
No 210
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.63 E-value=0.013 Score=53.57 Aligned_cols=166 Identities=15% Similarity=0.077 Sum_probs=83.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC---CCCCcchHHHHHHHHHh---cCChHHHHHHHHHHHHcCCCCChHhHHHHHHH
Q 038622 376 LLTYYCRAGDIKRAADIVQNMTSNG---CEPDIVTYGTLIGGLCK---AGRVEVASKLLRSIQMKGIVLTPQAYNPVIQA 449 (587)
Q Consensus 376 l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 449 (587)
++-+|....+++.-+++.+.+.... +.....+-...+.++.+ .|+.++|+.++..+......++++++..+++.
T Consensus 147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 3334455555555555555444320 00011122233334444 45555555555554333333444555444444
Q ss_pred HHh---------cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHH---HHHHH----HHHHHcCC-CCCHH
Q 038622 450 LFR---------RKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGE---AVDFV----IEMLERGF-LPEFS 512 (587)
Q Consensus 450 ~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---A~~~~----~~~~~~~~-~p~~~ 512 (587)
|-. ....++|+..|.+.-+. .|+...-.+++..+...|.+.+. ..++- ..+.+.|. .+...
T Consensus 227 yKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~d 304 (374)
T PF13281_consen 227 YKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQD 304 (374)
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccccc
Confidence 321 12377888888888774 34444333444444445542222 22222 11223332 23333
Q ss_pred HH--HHHHHHHHccCCHhHHHHHHHHHHhcCCC
Q 038622 513 SF--YMLAEGLVSLGKEETLVELIDMVMDKAKF 543 (587)
Q Consensus 513 ~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 543 (587)
.| ..++.+..-.|++++|.+.++++.+..|.
T Consensus 305 YWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~ 337 (374)
T PF13281_consen 305 YWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP 337 (374)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence 33 56778888899999999999999987643
No 211
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=0.0021 Score=57.90 Aligned_cols=100 Identities=14% Similarity=0.053 Sum_probs=79.2
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 038622 441 QAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAE 519 (587)
Q Consensus 441 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 519 (587)
..+.+++.++.+.+++.+|+....+++..+ +++...+..-+.++...|+ ++.|+..|+++++ +.| |..+-..|..
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e-~~~A~~df~ka~k--~~P~Nka~~~el~~ 333 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGE-YDLARDDFQKALK--LEPSNKAARAELIK 333 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhcc-HHHHHHHHHHHHH--hCCCcHHHHHHHHH
Confidence 356788889999999999999999999986 8888888889999999999 9999999999998 567 5555566666
Q ss_pred HHHccCCHh-HHHHHHHHHHhcCCCC
Q 038622 520 GLVSLGKEE-TLVELIDMVMDKAKFS 544 (587)
Q Consensus 520 ~~~~~g~~~-~A~~~~~~~~~~~~~~ 544 (587)
+-.+..++. ...++|.+|.......
T Consensus 334 l~~k~~~~~~kekk~y~~mF~k~~~~ 359 (397)
T KOG0543|consen 334 LKQKIREYEEKEKKMYANMFAKLAEE 359 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccc
Confidence 655554444 4478888888766543
No 212
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.60 E-value=0.033 Score=47.10 Aligned_cols=132 Identities=14% Similarity=0.085 Sum_probs=91.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCcchHHHH
Q 038622 337 TYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSN-----GCEPDIVTYGTL 411 (587)
Q Consensus 337 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~l 411 (587)
..+.++..+.-.|.+.-....+.+.++...+.++.....++....+.||.+.|...+++..+. +.+-+.......
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 334555666666777777778888777655556777777778788888888888888766543 222222333444
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038622 412 IGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEK 469 (587)
Q Consensus 412 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (587)
...|.-++++.+|...+.++...+.. ++...|.-+-+..-.|+..+|++.++.+...
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 55666777888888888888776444 5566666666677778888888888888875
No 213
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.57 E-value=0.00018 Score=40.73 Aligned_cols=33 Identities=58% Similarity=1.107 Sum_probs=16.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 038622 127 TYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPD 159 (587)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 159 (587)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 344555555555555555555555555444443
No 214
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.56 E-value=0.051 Score=48.09 Aligned_cols=226 Identities=20% Similarity=0.141 Sum_probs=157.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHhhHHHHHHHHHhcCCHHHHH
Q 038622 313 LKRIEEAEEIFDEMEIQGISR-NSVTYNTLIDGLCKSRRVEDAAQLMDQMIME-GLKPDKFTYNSLLTYYCRAGDIKRAA 390 (587)
Q Consensus 313 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~ 390 (587)
.+....+...+.......... ...........+...+++..+...+...... ........+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 356666666666666543211 2466667777788888898888888887752 12345556667777778888888999
Q ss_pred HHHHHHHHCCCCCCcchHHHHHH-HHHhcCChHHHHHHHHHHHHcCC--CCChHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038622 391 DIVQNMTSNGCEPDIVTYGTLIG-GLCKAGRVEVASKLLRSIQMKGI--VLTPQAYNPVIQALFRRKRTTEAMRLFREMM 467 (587)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 467 (587)
..+.........+ ......... .+...|+++.+...+.+...... ......+......+...++++.|...+.++.
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 9998888753332 222333333 67888999999999988865322 1123444455555677888999999999988
Q ss_pred hcCCCC-CHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCC
Q 038622 468 EKADPP-DALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPE-FSSFYMLAEGLVSLGKEETLVELIDMVMDKAKF 543 (587)
Q Consensus 468 ~~~~~~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 543 (587)
... +. ....+..+...+...+. ++.|...+..+... .|+ ...+..++..+...|..+++...+.+.....+.
T Consensus 195 ~~~-~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 195 KLN-PDDDAEALLNLGLLYLKLGK-YEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hhC-cccchHHHHHhhHHHHHccc-HHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 863 34 35667777777778887 88999999988873 453 566666777777777789999999998888876
No 215
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.56 E-value=0.0018 Score=60.46 Aligned_cols=123 Identities=19% Similarity=0.255 Sum_probs=87.5
Q ss_pred cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcc
Q 038622 84 HGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSE--GFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVF 161 (587)
Q Consensus 84 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 161 (587)
.+.+.+......+++......+.+.+..++-+.... ....-..+...+++.|...|..++++.++..=...|+-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 334556666666777777777777888887777654 112223456688888888888888888888888888888888
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHh
Q 038622 162 TYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLC 206 (587)
Q Consensus 162 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 206 (587)
+++.+++.+.+.|++..|.++...|...+...++.+...-+.++.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~ 184 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCY 184 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHH
Confidence 888888888888888888888888877755545554443333333
No 216
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.48 E-value=0.0061 Score=46.78 Aligned_cols=60 Identities=17% Similarity=0.164 Sum_probs=31.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCC--CChHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038622 410 TLIGGLCKAGRVEVASKLLRSIQMKGIV--LTPQAYNPVIQALFRRKRTTEAMRLFREMMEK 469 (587)
Q Consensus 410 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (587)
.-+....+.|++++|.+.|+.+...-+. -...+-..++.+|...+++++|+..+++.++.
T Consensus 15 ~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 15 QEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3344445556666666666655554111 12244455555666666666666666666554
No 217
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.48 E-value=0.0034 Score=58.60 Aligned_cols=122 Identities=17% Similarity=0.194 Sum_probs=82.4
Q ss_pred CCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHH
Q 038622 261 CQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESS--GCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTY 338 (587)
Q Consensus 261 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 338 (587)
.+.+......++.......+.+.+..++.+.... ....-+.+...+++.|...|..+.++.++..=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3555666666677666667777777777777654 11122334457778888888888888888777777888888888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh
Q 038622 339 NTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCR 382 (587)
Q Consensus 339 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 382 (587)
+.++..+.+.|++..|.++...|.......+..++...+.+|.+
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 88888888888888888887777765444455554444444443
No 218
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.47 E-value=0.00025 Score=39.74 Aligned_cols=31 Identities=35% Similarity=0.604 Sum_probs=15.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 038622 127 TYNTLVNGLCKVGHVKQALEVMDMMLQEGFD 157 (587)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 157 (587)
+|+.++.++++.|+++.|.++|+.|.+.|+.
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 3444444444444444454444444444443
No 219
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.37 E-value=0.052 Score=52.15 Aligned_cols=86 Identities=20% Similarity=0.258 Sum_probs=44.5
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhh---------
Q 038622 302 TYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFT--------- 372 (587)
Q Consensus 302 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~--------- 372 (587)
+...+..-+.+...+.-|.++|..+-.. ..+...+...++|++|..+-++..+ ..||...
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~ 817 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAEN 817 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhh
Confidence 4444444455555666666666665321 2345556667777777766665443 1223211
Q ss_pred --HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038622 373 --YNSLLTYYCRAGDIKRAADIVQNMTS 398 (587)
Q Consensus 373 --~~~l~~~~~~~~~~~~A~~~~~~~~~ 398 (587)
+...-++|.+.|+-.+|..+++++..
T Consensus 818 DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 818 DRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 12222345555555666666655543
No 220
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.36 E-value=0.0053 Score=49.32 Aligned_cols=95 Identities=18% Similarity=0.177 Sum_probs=77.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCH-----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 038622 447 IQALFRRKRTTEAMRLFREMMEKADPPDA-----LTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEG 520 (587)
Q Consensus 447 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~ 520 (587)
+.-++..|++++|..-|..+++.- |+.. ..|..-+.++.+.+. ++.|+.-..++++. .| ...++...+.+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k-~e~aI~dcsKaiel--~pty~kAl~RRAea 177 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRK-WESAIEDCSKAIEL--NPTYEKALERRAEA 177 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhh-HHHHHHHHHhhHhc--CchhHHHHHHHHHH
Confidence 456788999999999999999863 4432 344455567788888 99999999999984 46 57788888999
Q ss_pred HHccCCHhHHHHHHHHHHhcCCCCC
Q 038622 521 LVSLGKEETLVELIDMVMDKAKFSD 545 (587)
Q Consensus 521 ~~~~g~~~~A~~~~~~~~~~~~~~~ 545 (587)
|.++.++++|+.-|+++++.+|...
T Consensus 178 yek~ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcchH
Confidence 9999999999999999999999863
No 221
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.34 E-value=0.018 Score=51.08 Aligned_cols=57 Identities=7% Similarity=-0.089 Sum_probs=25.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 038622 376 LLTYYCRAGDIKRAADIVQNMTSNG-----CEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQ 432 (587)
Q Consensus 376 l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 432 (587)
+..++...+.++++.+.|+.+.+.. ......++..|+..|.+..|+++|.-+..++.
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~ 189 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAA 189 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHH
Confidence 3444444445555555555443320 01112344445555555555555554444433
No 222
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.32 E-value=0.00025 Score=38.75 Aligned_cols=30 Identities=37% Similarity=0.586 Sum_probs=22.7
Q ss_pred hhHHHHHHHHHHcCChhhHHHHHHhhccCC
Q 038622 21 STFNILIKALCKAHQIRPAILMMEEMPGYG 50 (587)
Q Consensus 21 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 50 (587)
++|+.++++|.+.|++++|.++|++|.+.|
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 367778888888888888888888777654
No 223
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.32 E-value=0.00049 Score=63.42 Aligned_cols=67 Identities=13% Similarity=0.088 Sum_probs=59.9
Q ss_pred CCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC-H---HHHHHHHHHHHccCCHhHHHHHHHHHHhcC
Q 038622 472 PPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPE-F---SSFYMLAEGLVSLGKEETLVELIDMVMDKA 541 (587)
Q Consensus 472 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 541 (587)
|.+...+..++.++...|+ +++|+..|+++++ +.|+ . .++++++.+|..+|++++|+..++++++..
T Consensus 72 P~~a~a~~NLG~AL~~lGr-yeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGR-VKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 6678889999999999999 9999999999998 5675 4 358999999999999999999999999973
No 224
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.31 E-value=0.0013 Score=45.80 Aligned_cols=62 Identities=23% Similarity=0.290 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCCC---C-HHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 038622 477 TYKHVFRGLCNGGGPIGEAVDFVIEMLER--GFLP---E-FSSFYMLAEGLVSLGKEETLVELIDMVMD 539 (587)
Q Consensus 477 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~--~~~p---~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 539 (587)
++..++..+...|+ +++|+++++++++. ...+ + ..++..++.++...|++++|+++++++++
T Consensus 7 ~~~~la~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGR-YDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45556666666666 67777666666632 0111 1 34556677777777777777777777665
No 225
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.29 E-value=0.11 Score=45.89 Aligned_cols=225 Identities=20% Similarity=0.111 Sum_probs=145.9
Q ss_pred cCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038622 278 RGMLEEALKLLKEMESSGCAR-NVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQ-GISRNSVTYNTLIDGLCKSRRVEDAA 355 (587)
Q Consensus 278 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~ 355 (587)
.+....+...+.......... ...........+...+++..+...+...... ..+.....+......+...+++..+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 355566666666666543111 2456667777778888888888888777642 22455566667777777778888888
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHH-HHHhcCCHHHHHHHHHHHHHCCC--CCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 038622 356 QLMDQMIMEGLKPDKFTYNSLLT-YYCRAGDIKRAADIVQNMTSNGC--EPDIVTYGTLIGGLCKAGRVEVASKLLRSIQ 432 (587)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 432 (587)
..+.........+ ......... .+...|+++.|...+........ ......+......+...++.+.+...+.+..
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 8888887643332 122222333 67788888888888888755321 1123334444444566788888888888888
Q ss_pred HcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 038622 433 MKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLER 505 (587)
Q Consensus 433 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 505 (587)
..........+..+...+...++++.|...+..+.... +.....+......+...+. ++++...+.+....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 265 (291)
T COG0457 195 KLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD-PDNAEALYNLALLLLELGR-YEEALEALEKALEL 265 (291)
T ss_pred hhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC-cccHHHHhhHHHHHHHcCC-HHHHHHHHHHHHHh
Confidence 75222135667778888888888888888888888752 2224444455555555555 88888888888863
No 226
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.28 E-value=0.14 Score=47.02 Aligned_cols=26 Identities=8% Similarity=0.079 Sum_probs=16.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038622 444 NPVIQALFRRKRTTEAMRLFREMMEK 469 (587)
Q Consensus 444 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (587)
..++.+..-.|++++|.+.++++.+.
T Consensus 309 ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 309 ATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 34555555666666666666666654
No 227
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.28 E-value=0.093 Score=44.79 Aligned_cols=62 Identities=18% Similarity=0.139 Sum_probs=42.8
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC
Q 038622 481 VFRGLCNGGGPIGEAVDFVIEMLERGFLP---EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS 544 (587)
Q Consensus 481 l~~~~~~~~~~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 544 (587)
++..|.+.|. +-.|+.-++++++. .+. ..+++..+..+|...|-.++|.+.-+-+-.-.|++
T Consensus 173 IaryY~kr~~-~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 173 IARYYLKRGA-YVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHHHHHHhcC-hHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 4556777777 88888888888874 222 25566777788888888888877766554444443
No 228
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.28 E-value=0.0072 Score=44.77 Aligned_cols=94 Identities=19% Similarity=0.130 Sum_probs=72.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-C---HHHHHHHHHHHH
Q 038622 447 IQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-E---FSSFYMLAEGLV 522 (587)
Q Consensus 447 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~---~~~~~~l~~~~~ 522 (587)
+-++...|+.+.|++.|.+++.. .|.....|+.-..++.-+|+ .++|.+-++++++.. .| . ..++..-+.+|.
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~-~e~ALdDLn~AleLa-g~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGD-DEEALDDLNKALELA-GDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCC-hHHHHHHHHHHHHhc-CccchHHHHHHHHHHHHHH
Confidence 44567788888888888888886 36677888888888888888 888888888888742 22 2 345666777888
Q ss_pred ccCCHhHHHHHHHHHHhcCCC
Q 038622 523 SLGKEETLVELIDMVMDKAKF 543 (587)
Q Consensus 523 ~~g~~~~A~~~~~~~~~~~~~ 543 (587)
..|+-+.|+.-|+.+.+.+..
T Consensus 127 l~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HhCchHHHHHhHHHHHHhCCH
Confidence 888888999888888877654
No 229
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.26 E-value=0.0019 Score=59.75 Aligned_cols=65 Identities=18% Similarity=0.168 Sum_probs=57.1
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 038622 439 TPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDA---LTYKHVFRGLCNGGGPIGEAVDFVIEMLER 505 (587)
Q Consensus 439 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 505 (587)
+...++.++.+|...|++++|+..|+++++.+ |.+. ..|.+++.+|...|+ .++|++.++++++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-Pd~aeA~~A~yNLAcaya~LGr-~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN-PNPDEAQAAYYNKACCHAYREE-GKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCchHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh
Confidence 56889999999999999999999999999964 3333 358899999999999 99999999999984
No 230
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.25 E-value=0.0005 Score=41.20 Aligned_cols=34 Identities=15% Similarity=0.212 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCC
Q 038622 512 SSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSD 545 (587)
Q Consensus 512 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 545 (587)
.++..++..|...|++++|+++++++++..|++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~ 35 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDP 35 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 4567788888888888888888888888888763
No 231
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.22 E-value=0.077 Score=44.51 Aligned_cols=207 Identities=14% Similarity=0.117 Sum_probs=114.1
Q ss_pred HhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038622 266 FTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGL 345 (587)
Q Consensus 266 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 345 (587)
..|.....+|....++++|...+.++.+-. ..+...| .. ...++.|.-+.+++... +.-...+.....+|
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~y-Ennrslf-hA------AKayEqaamLake~~kl--sEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGY-ENNRSLF-HA------AKAYEQAAMLAKELSKL--SEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHH-HhcccHH-HH------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence 345555666777777888777776665321 1121111 11 12344454455554432 22334455556667
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CC--CCCcchHHHHHHHHHhcCC
Q 038622 346 CKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSN---GC--EPDIVTYGTLIGGLCKAGR 420 (587)
Q Consensus 346 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~--~~~~~~~~~l~~~~~~~~~ 420 (587)
..+|..+.|-..++++-+. ....+++.|+++|++.... +- +-..+.+....+.+++..+
T Consensus 102 ~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k 165 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK 165 (308)
T ss_pred HHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH
Confidence 7777777777666665431 2233555566666554431 00 0012345556667778888
Q ss_pred hHHHHHHHHHHHHc----CCCCCh-HhHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHhCCCCH
Q 038622 421 VEVASKLLRSIQMK----GIVLTP-QAYNPVIQALFRRKRTTEAMRLFREMMEKA---DPPDALTYKHVFRGLCNGGGPI 492 (587)
Q Consensus 421 ~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~ 492 (587)
+++|...+.+-... .--++. ..+...+-.+....++..|.++++.--+.+ -+.+..+...++.+| ..|+ .
T Consensus 166 f~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD-~ 243 (308)
T KOG1585|consen 166 FTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGD-I 243 (308)
T ss_pred hhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCC-H
Confidence 88877666543221 111122 345555666777789999999998855431 244566777777664 5666 6
Q ss_pred HHHHHHHH
Q 038622 493 GEAVDFVI 500 (587)
Q Consensus 493 ~~A~~~~~ 500 (587)
+++.+++.
T Consensus 244 E~~~kvl~ 251 (308)
T KOG1585|consen 244 EEIKKVLS 251 (308)
T ss_pred HHHHHHHc
Confidence 77655443
No 232
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.20 E-value=0.023 Score=45.39 Aligned_cols=68 Identities=25% Similarity=0.361 Sum_probs=32.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----HcCCCCCHHH
Q 038622 444 NPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEML-----ERGFLPEFSS 513 (587)
Q Consensus 444 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~-----~~~~~p~~~~ 513 (587)
..++..+...|++++|...+.+++..+ |-+...+..++.++...|+ ..+|.+.|+++. +.|+.|++.+
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~-~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGR-RAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcC-HHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 344445555555555555555555543 4455555555555555555 555555555543 2355554443
No 233
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.19 E-value=0.059 Score=46.82 Aligned_cols=149 Identities=15% Similarity=0.140 Sum_probs=82.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 038622 58 FTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCK 137 (587)
Q Consensus 58 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 137 (587)
-..-.......|++.+|...|..+.... +.+..+...++.+|...|+.+.|..++..+..............-+..+.+
T Consensus 137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~q 215 (304)
T COG3118 137 ALAEAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQ 215 (304)
T ss_pred HHHHhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHH
Confidence 3344455667777888888777777765 445666667777777888888877777766543111111111122333444
Q ss_pred cCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCChhhHHHHHHHHhccC
Q 038622 138 VGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDC-SPNTITYNTLISTLCKEN 209 (587)
Q Consensus 138 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 209 (587)
.....+...+-+..-.. +.|...-..+...+...|+.+.|.+.+-.++.++. ..+......++..+.-.|
T Consensus 216 aa~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 216 AAATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HhcCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 44444444444444332 22455556666667777777777766666554421 123344445555554444
No 234
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.16 E-value=0.013 Score=56.71 Aligned_cols=116 Identities=17% Similarity=0.169 Sum_probs=63.9
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHc--CCCC-CHHHHHHHHHHHHccCCHhH
Q 038622 454 KRTTEAMRLFREMMEKADPPDALTYK-HVFRGLCNGGGPIGEAVDFVIEMLER--GFLP-EFSSFYMLAEGLVSLGKEET 529 (587)
Q Consensus 454 g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~A~~~~~~~~~~--~~~p-~~~~~~~l~~~~~~~g~~~~ 529 (587)
...+.|.+++..+.++ .|+...|. .-++.+...|+ .++|++.+++++.. ..+. ..-.++-+++++.-.+++++
T Consensus 247 ~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~-~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGN-LEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcC-HHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 4556666666666664 34444333 33344445555 77777777665531 1111 23344566666666777777
Q ss_pred HHHHHHHHHhcCCCCCc--hhhhhhhHHHHHHH-------HHHHHhcchhhh
Q 038622 530 LVELIDMVMDKAKFSDR--ETSMVRGFLKIRKF-------QDALATFGDILD 572 (587)
Q Consensus 530 A~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-------~~A~~~~~~~~~ 572 (587)
|...+.++.+.+..+.. .+..+.++...|+. ++|...|.++-.
T Consensus 324 A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 324 AAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 77777776665555433 24444556666666 555555555443
No 235
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.15 E-value=0.0082 Score=43.46 Aligned_cols=76 Identities=17% Similarity=0.314 Sum_probs=41.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCChhhHHHH
Q 038622 61 LMQGLIEEGNLDGALRIREQMVEHGC-LVTNVTVNVLVHGFCKEG--------RIEDALSFIQEMVSEGFNPDQFTYNTL 131 (587)
Q Consensus 61 l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~l 131 (587)
.+..+...|++...-.+|+.+.+.|+ -|+..+|+.++.+..+.. +.-..+.+|+.++..++.|+..+|+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34444455666666666666666655 455555655555544332 233445556666666666666666665
Q ss_pred HHHHH
Q 038622 132 VNGLC 136 (587)
Q Consensus 132 ~~~~~ 136 (587)
+..+.
T Consensus 111 l~~Ll 115 (120)
T PF08579_consen 111 LGSLL 115 (120)
T ss_pred HHHHH
Confidence 55543
No 236
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.13 E-value=0.0088 Score=52.32 Aligned_cols=158 Identities=13% Similarity=0.032 Sum_probs=109.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCChHhH--HHHHHHHHhcCCH
Q 038622 380 YCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMK-GIVLTPQAY--NPVIQALFRRKRT 456 (587)
Q Consensus 380 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~--~~l~~~~~~~g~~ 456 (587)
....|...+|...|+++++. .+.|...+...-.+|...|+.+.-...++++... +....-..| ..++.++...|-+
T Consensus 113 ~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 34567888888888888875 3336666666677888888888888888888765 221111222 2345556678899
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHccCCHhHHHH
Q 038622 457 TEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP----EFSSFYMLAEGLVSLGKEETLVE 532 (587)
Q Consensus 457 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~ 532 (587)
++|.+.-+++++.+ +.|..........+...|+ ..++.++..+--.. .+. -...|...+-.+...+.++.|++
T Consensus 192 ~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r-~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 192 DDAEKQADRALQIN-RFDCWASHAKAHVLEMNGR-HKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred hhHHHHHHhhccCC-CcchHHHHHHHHHHHhcch-hhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 99999988888865 5666666677777777888 88888887765421 121 13455667777788889999999
Q ss_pred HHHHHHhcC
Q 038622 533 LIDMVMDKA 541 (587)
Q Consensus 533 ~~~~~~~~~ 541 (587)
+|++-+-..
T Consensus 269 IyD~ei~k~ 277 (491)
T KOG2610|consen 269 IYDREIWKR 277 (491)
T ss_pred HHHHHHHHH
Confidence 998754433
No 237
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.05 Score=47.27 Aligned_cols=171 Identities=13% Similarity=0.111 Sum_probs=113.9
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 038622 10 DMVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVT 89 (587)
Q Consensus 10 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 89 (587)
+++++-+++....-..-.......|++..|...|..+.... +.+......++.+|...|+.+.|..++..+........
T Consensus 124 ~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~ 202 (304)
T COG3118 124 QFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKA 202 (304)
T ss_pred HHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhH
Confidence 33433334433333344456788999999999999998876 56678888999999999999999999998765421111
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCcccHHHHHH
Q 038622 90 NVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGF-DPDVFTYNSLIS 168 (587)
Q Consensus 90 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~ 168 (587)
......-+..+.+.....+...+-+++-.. +.|...-..+...+...|+.+.|.+.+-.++.++. .-|...-..++.
T Consensus 203 ~~~l~a~i~ll~qaa~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle 280 (304)
T COG3118 203 AHGLQAQIELLEQAAATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLE 280 (304)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHH
Confidence 111222344555555555555555555543 55777888899999999999999998877776521 224556666777
Q ss_pred HHHhcCCHHHHHHHH
Q 038622 169 GLCKLGEVEEAVEIL 183 (587)
Q Consensus 169 ~~~~~g~~~~a~~~~ 183 (587)
.+...|..+.+...+
T Consensus 281 ~f~~~g~~Dp~~~~~ 295 (304)
T COG3118 281 LFEAFGPADPLVLAY 295 (304)
T ss_pred HHHhcCCCCHHHHHH
Confidence 776666444433333
No 238
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.08 E-value=0.0079 Score=43.54 Aligned_cols=78 Identities=19% Similarity=0.283 Sum_probs=57.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC-CCChhhHHHHHHHHHhcC--------ChHHHHHHHHHHHhCCCCCCcccHHH
Q 038622 95 VLVHGFCKEGRIEDALSFIQEMVSEGF-NPDQFTYNTLVNGLCKVG--------HVKQALEVMDMMLQEGFDPDVFTYNS 165 (587)
Q Consensus 95 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~ 165 (587)
.-+..+...+++.....+|+.+.+.|+ -|+..+|+.++...++.. +.-+.+.+|+.++..+++|+..+|+.
T Consensus 30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni 109 (120)
T PF08579_consen 30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI 109 (120)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence 344555566889999999999998888 888889998888776543 23456677777777777777777777
Q ss_pred HHHHHHh
Q 038622 166 LISGLCK 172 (587)
Q Consensus 166 l~~~~~~ 172 (587)
++..+.+
T Consensus 110 vl~~Llk 116 (120)
T PF08579_consen 110 VLGSLLK 116 (120)
T ss_pred HHHHHHH
Confidence 7766543
No 239
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.05 E-value=0.086 Score=46.99 Aligned_cols=229 Identities=13% Similarity=0.049 Sum_probs=144.8
Q ss_pred HHHhcCChHHHHHHHHHHHHcC--CCCCHHhHHHHHHHHHccCChHHHHHHHHH----HHHCC-CCCCHHHHHHHHHHHH
Q 038622 239 GLCLTSNFDVAMELFQEMKTKG--CQPDEFTYNMLIDSLCSRGMLEEALKLLKE----MESSG-CARNVVTYNTLIDGFC 311 (587)
Q Consensus 239 ~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~----~~~~~-~~~~~~~~~~l~~~~~ 311 (587)
-+....+.++++..+.+....- ....-.++..+..+..+.|.+++++..--. +.+.. ...-..++..+.+++.
T Consensus 15 ~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e 94 (518)
T KOG1941|consen 15 QLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNE 94 (518)
T ss_pred hHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556788899998888776541 011124555667778888888877654322 22211 0111234556666666
Q ss_pred ccCCHHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CC--CHhhHHHHHHHHHh
Q 038622 312 KLKRIEEAEEIFDEMEIQ-GISR---NSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGL---KP--DKFTYNSLLTYYCR 382 (587)
Q Consensus 312 ~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~ 382 (587)
+.-++.+++.+-..-... |..+ .-.....+..++...+.++++++.|+.+.+-.. +| ...++..+...|..
T Consensus 95 ~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~ 174 (518)
T KOG1941|consen 95 KLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQ 174 (518)
T ss_pred HHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHH
Confidence 666677776665544332 1112 113344567778888899999999999886311 11 23468889999999
Q ss_pred cCCHHHHHHHHHHHHHC----CCCCCc------chHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC-hHhHHHHH
Q 038622 383 AGDIKRAADIVQNMTSN----GCEPDI------VTYGTLIGGLCKAGRVEVASKLLRSIQMK----GIVLT-PQAYNPVI 447 (587)
Q Consensus 383 ~~~~~~A~~~~~~~~~~----~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~ 447 (587)
..|+++|.-+..++.+. ++. +. .+...+.-++...|..-.|.+..++..+. |-.+. ......++
T Consensus 175 l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~a 253 (518)
T KOG1941|consen 175 LKDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFA 253 (518)
T ss_pred HHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 99999999888776542 222 21 13344556677788888888887776654 22211 13345677
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 038622 448 QALFRRKRTTEAMRLFREMME 468 (587)
Q Consensus 448 ~~~~~~g~~~~A~~~~~~~~~ 468 (587)
..|...|+.+.|+.-|+++..
T Consensus 254 DIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 254 DIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHhcccHhHHHHHHHHHHH
Confidence 888888999988888887764
No 240
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.05 E-value=0.0018 Score=45.06 Aligned_cols=62 Identities=16% Similarity=0.208 Sum_probs=32.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC-CC-hHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038622 407 TYGTLIGGLCKAGRVEVASKLLRSIQMK----GIV-LT-PQAYNPVIQALFRRKRTTEAMRLFREMME 468 (587)
Q Consensus 407 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 468 (587)
++..++..|...|++++|++.++++.+. |.. |. ..++..++.++...|++++|+++++++++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4555556666666666666666555433 111 01 23455566666666666666666666554
No 241
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.04 E-value=0.0044 Score=49.76 Aligned_cols=97 Identities=22% Similarity=0.228 Sum_probs=80.0
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCc-hhhhhhhH
Q 038622 481 VFRGLCNGGGPIGEAVDFVIEMLERGFLPE-----FSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDR-ETSMVRGF 554 (587)
Q Consensus 481 l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~ 554 (587)
-+.-++..|. +++|..-|..+++. +++. ...|.+-+.++.++++++.|+.-..++++.+|...- ...-+.+|
T Consensus 101 EGN~~F~ngd-yeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeay 178 (271)
T KOG4234|consen 101 EGNELFKNGD-YEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAY 178 (271)
T ss_pred HHHHhhhccc-HHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHH
Confidence 3445678899 99999999999985 4442 235667788999999999999999999999997643 44557789
Q ss_pred HHHHHHHHHHHhcchhhhccCchhh
Q 038622 555 LKIRKFQDALATFGDILDSRMPRKT 579 (587)
Q Consensus 555 ~~~~~~~~A~~~~~~~~~~~~~~~~ 579 (587)
-+..+++.|+.-|+++++..|...+
T Consensus 179 ek~ek~eealeDyKki~E~dPs~~e 203 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILESDPSRRE 203 (271)
T ss_pred HhhhhHHHHHHHHHHHHHhCcchHH
Confidence 9999999999999999999987654
No 242
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=96.95 E-value=0.0015 Score=35.51 Aligned_cols=28 Identities=50% Similarity=0.942 Sum_probs=13.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 038622 127 TYNTLVNGLCKVGHVKQALEVMDMMLQE 154 (587)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 154 (587)
+|+.++.+|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3444444444444444444444444443
No 243
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.93 E-value=0.0025 Score=35.52 Aligned_cols=33 Identities=18% Similarity=0.392 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC
Q 038622 512 SSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS 544 (587)
Q Consensus 512 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 544 (587)
.++..++.++...|++++|++.++++++..|.+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 567888999999999999999999999888863
No 244
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.92 E-value=0.014 Score=43.24 Aligned_cols=93 Identities=15% Similarity=0.104 Sum_probs=76.2
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCC-----chhhhhhhHH
Q 038622 482 FRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSD-----RETSMVRGFL 555 (587)
Q Consensus 482 ~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~~~~~ 555 (587)
+-++...|+ .+.|++.|.+++. +-| .+.+|.+-+.++.-.|+.++|+.-++++++...... ....-+..|-
T Consensus 50 ~valaE~g~-Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 50 AIALAEAGD-LDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHhccc-hHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 335678888 9999999999998 556 899999999999999999999999999999876652 1344555577
Q ss_pred HHHHHHHHHHhcchhhhccCch
Q 038622 556 KIRKFQDALATFGDILDSRMPR 577 (587)
Q Consensus 556 ~~~~~~~A~~~~~~~~~~~~~~ 577 (587)
..|+.+.|..-|..+-+-+.+.
T Consensus 127 l~g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred HhCchHHHHHhHHHHHHhCCHH
Confidence 8889999999998887766544
No 245
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.90 E-value=0.18 Score=41.51 Aligned_cols=186 Identities=14% Similarity=0.126 Sum_probs=103.6
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHH
Q 038622 347 KSRRVEDAAQLMDQMIMEGLKPD-KFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVAS 425 (587)
Q Consensus 347 ~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 425 (587)
..|-+.-|.--|.+.+. +.|+ +.+++.++-.+...|+++.|.+.|+...+.++.-+. +...-+-.+.--|++.-|.
T Consensus 77 SlGL~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Y-a~lNRgi~~YY~gR~~LAq 153 (297)
T COG4785 77 SLGLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY-AHLNRGIALYYGGRYKLAQ 153 (297)
T ss_pred hhhHHHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchH-HHhccceeeeecCchHhhH
Confidence 34455555555666655 3454 457888888888889999999999888875443222 2222233344568888888
Q ss_pred HHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 038622 426 KLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLER 505 (587)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 505 (587)
+-+...-..++. |+ .....+..-...-++.+|..-+.+--+ ..+...|...+-.+. .|+ +. -...++++...
T Consensus 154 ~d~~~fYQ~D~~-DP-fR~LWLYl~E~k~dP~~A~tnL~qR~~---~~d~e~WG~~iV~~y-Lgk-iS-~e~l~~~~~a~ 225 (297)
T COG4785 154 DDLLAFYQDDPN-DP-FRSLWLYLNEQKLDPKQAKTNLKQRAE---KSDKEQWGWNIVEFY-LGK-IS-EETLMERLKAD 225 (297)
T ss_pred HHHHHHHhcCCC-Ch-HHHHHHHHHHhhCCHHHHHHHHHHHHH---hccHhhhhHHHHHHH-Hhh-cc-HHHHHHHHHhh
Confidence 777776665332 22 111111122234467777665443332 223333332222222 222 11 12233333321
Q ss_pred CCCCC-------HHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC
Q 038622 506 GFLPE-------FSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS 544 (587)
Q Consensus 506 ~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 544 (587)
-..+ .+++..|+..+...|+.++|..+|+-++..+.-+
T Consensus 226 -a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVyn 270 (297)
T COG4785 226 -ATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVYN 270 (297)
T ss_pred -ccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHHH
Confidence 1111 3567778889999999999999999888766544
No 246
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.90 E-value=0.073 Score=51.75 Aligned_cols=119 Identities=18% Similarity=0.154 Sum_probs=59.7
Q ss_pred CChHHHHHHHHHHHHcCCCCChHhH-HHHHHHHHhcCCHHHHHHHHHHHHhc--CC-CCCHHHHHHHHHHHHhCCCCHHH
Q 038622 419 GRVEVASKLLRSIQMKGIVLTPQAY-NPVIQALFRRKRTTEAMRLFREMMEK--AD-PPDALTYKHVFRGLCNGGGPIGE 494 (587)
Q Consensus 419 ~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~--~~-~~~~~~~~~l~~~~~~~~~~~~~ 494 (587)
.+.+.|.++++.+... -|+...| ..-++.+...|+.++|++.|+++... .. ......+..+++.+...++ |++
T Consensus 247 ~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~-w~~ 323 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHD-WEE 323 (468)
T ss_pred CCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHch-HHH
Confidence 3455566666666553 2233222 23345555566666666666655431 10 1123334445555555566 666
Q ss_pred HHHHHHHHHHcCCCCCHHHH-HHHHHHHHccCCH-------hHHHHHHHHHHhcC
Q 038622 495 AVDFVIEMLERGFLPEFSSF-YMLAEGLVSLGKE-------ETLVELIDMVMDKA 541 (587)
Q Consensus 495 A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~-------~~A~~~~~~~~~~~ 541 (587)
|...+.++.+.+ .=+...| +..+-++...|+. ++|.+++++++...
T Consensus 324 A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 324 AAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 666666666522 1122222 3444455556665 66666666655433
No 247
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.88 E-value=0.24 Score=42.43 Aligned_cols=82 Identities=16% Similarity=0.184 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 038622 55 ERTFTTLMQGLIEEGNLDGALRIREQMVEHGC--LVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLV 132 (587)
Q Consensus 55 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 132 (587)
+..+..-+....+.|++++|...|+.+....+ +....+...++.++.+.++++.|+..+++.++.........|...+
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 34455555566688888888888888876532 2234455666777788888888888888887752111122344444
Q ss_pred HHHH
Q 038622 133 NGLC 136 (587)
Q Consensus 133 ~~~~ 136 (587)
.+++
T Consensus 114 kgLs 117 (254)
T COG4105 114 KGLS 117 (254)
T ss_pred HHHH
Confidence 4444
No 248
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.87 E-value=0.59 Score=46.81 Aligned_cols=276 Identities=14% Similarity=0.063 Sum_probs=149.8
Q ss_pred hHHHHHHHHHHHHcCCCCCHHhHHHHHHHH-----HccCChHHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHHcc
Q 038622 246 FDVAMELFQEMKTKGCQPDEFTYNMLIDSL-----CSRGMLEEALKLLKEMES-------SGCARNVVTYNTLIDGFCKL 313 (587)
Q Consensus 246 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 313 (587)
...+..+++.....| +......++.++ ....+.+.|+.+++.+.+ .+ .......++.+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 456777777766665 333333333333 244577777777777765 33 233556667777664
Q ss_pred C-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH----
Q 038622 314 K-----RIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKS---RRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYC---- 381 (587)
Q Consensus 314 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---- 381 (587)
. +...|..++......+ .|+.. ..++..+... .+...|.++|..+...|. ...+..+..+|.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~--~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~---~~A~~~la~~y~~G~g 375 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-NPDAQ--YLLGVLYETGTKERDYRRAFEYYSLAAKAGH---ILAIYRLALCYELGLG 375 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-CchHH--HHHHHHHHcCCccccHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhCCC
Confidence 3 5667888888877766 33332 2334333322 356788888888877663 233333333332
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHH-HH---HHh----c
Q 038622 382 RAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVI-QA---LFR----R 453 (587)
Q Consensus 382 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~---~~~----~ 453 (587)
...+...|..+++++.+.| .|...........+.. ++.+.+...+..+...+.. ...+-...+ .. ... .
T Consensus 376 v~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~~ 452 (552)
T KOG1550|consen 376 VERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGVI 452 (552)
T ss_pred cCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhccccccccccc
Confidence 2246777888888887765 2222111222222223 6666666665555554333 221111111 11 111 1
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc-C--CH
Q 038622 454 KRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNG---GGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSL-G--KE 527 (587)
Q Consensus 454 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g--~~ 527 (587)
.+...+...+.++...| +......+...+... +.+++.|...|..+...+ ......++.++..- | ..
T Consensus 453 ~~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~~ 525 (552)
T KOG1550|consen 453 STLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKVL 525 (552)
T ss_pred cchhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcchh
Confidence 24566666677666544 344444455444433 345778888888887643 66667777776532 1 15
Q ss_pred hHHHHHHHHHHhcCCC
Q 038622 528 ETLVELIDMVMDKAKF 543 (587)
Q Consensus 528 ~~A~~~~~~~~~~~~~ 543 (587)
..|.++++++.+.+..
T Consensus 526 ~~a~~~~~~~~~~~~~ 541 (552)
T KOG1550|consen 526 HLAKRYYDQASEEDSR 541 (552)
T ss_pred HHHHHHHHHHHhcCch
Confidence 7777777777765554
No 249
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.86 E-value=0.22 Score=41.67 Aligned_cols=89 Identities=8% Similarity=0.014 Sum_probs=41.2
Q ss_pred CCHHHHHHHHHHHHhc--CCC---CCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC-----H-HHHHHHHHHHH
Q 038622 454 KRTTEAMRLFREMMEK--ADP---PDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPE-----F-SSFYMLAEGLV 522 (587)
Q Consensus 454 g~~~~A~~~~~~~~~~--~~~---~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~-----~-~~~~~l~~~~~ 522 (587)
.++++|+..|+++-+- |-. .....+..+...-...++ +.+|+++|++.....+..+ . +.+..-+-++.
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leq-Y~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl 206 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQ-YSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHL 206 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhH
Confidence 4555555555555542 111 112223333333344555 6666666666654322221 1 11222233333
Q ss_pred ccCCHhHHHHHHHHHHhcCCC
Q 038622 523 SLGKEETLVELIDMVMDKAKF 543 (587)
Q Consensus 523 ~~g~~~~A~~~~~~~~~~~~~ 543 (587)
-.++.-.+...+++..+..|.
T Consensus 207 ~~~D~v~a~~ALeky~~~dP~ 227 (288)
T KOG1586|consen 207 CKADEVNAQRALEKYQELDPA 227 (288)
T ss_pred hcccHHHHHHHHHHHHhcCCc
Confidence 445566666666666666665
No 250
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.84 E-value=0.022 Score=45.95 Aligned_cols=92 Identities=10% Similarity=0.092 Sum_probs=51.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038622 446 VIQALFRRKRTTEAMRLFREMMEKADPPDA----LTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGL 521 (587)
Q Consensus 446 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 521 (587)
++..+...|++++|...++..+.. +.|. ..-..+.......|. +|+|...+....+.+. .+......|+++
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~--t~De~lk~l~~lRLArvq~q~~k-~D~AL~~L~t~~~~~w--~~~~~elrGDil 169 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQ--TKDENLKALAALRLARVQLQQKK-ADAALKTLDTIKEESW--AAIVAELRGDIL 169 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHcc--chhHHHHHHHHHHHHHHHHHhhh-HHHHHHHHhccccccH--HHHHHHHhhhHH
Confidence 345566667777777777766653 2221 122334455566666 6777666655432110 222344566677
Q ss_pred HccCCHhHHHHHHHHHHhcCC
Q 038622 522 VSLGKEETLVELIDMVMDKAK 542 (587)
Q Consensus 522 ~~~g~~~~A~~~~~~~~~~~~ 542 (587)
...|+.++|+..|+++++..+
T Consensus 170 l~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 170 LAKGDKQEARAAYEKALESDA 190 (207)
T ss_pred HHcCchHHHHHHHHHHHHccC
Confidence 777777777777777776663
No 251
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.81 E-value=0.14 Score=42.12 Aligned_cols=187 Identities=16% Similarity=0.008 Sum_probs=109.9
Q ss_pred HHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 038622 28 KALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIE 107 (587)
Q Consensus 28 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 107 (587)
..|-..|-+.-|.-=|....... |.-+.+|+.++.-+...|+++.|.+.|+...+.++. ...+...-+..+.--|++.
T Consensus 73 vlYDSlGL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~-y~Ya~lNRgi~~YY~gR~~ 150 (297)
T COG4785 73 VLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRYK 150 (297)
T ss_pred chhhhhhHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc-chHHHhccceeeeecCchH
Confidence 34555666666666666666553 445778888888888999999999999999988733 3333333334455678888
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHH-HHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHH-HHHhcCCHHHHHHHHHH
Q 038622 108 DALSFIQEMVSEGFNPDQFTYNTLVN-GLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLIS-GLCKLGEVEEAVEILNQ 185 (587)
Q Consensus 108 ~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~a~~~~~~ 185 (587)
-|.+-+...-+.+ +.|+ |..+-. .--+.-++.+|..-+.+--+. .|..-|...+- .|...=..+. +++.
T Consensus 151 LAq~d~~~fYQ~D-~~DP--fR~LWLYl~E~k~dP~~A~tnL~qR~~~---~d~e~WG~~iV~~yLgkiS~e~---l~~~ 221 (297)
T COG4785 151 LAQDDLLAFYQDD-PNDP--FRSLWLYLNEQKLDPKQAKTNLKQRAEK---SDKEQWGWNIVEFYLGKISEET---LMER 221 (297)
T ss_pred hhHHHHHHHHhcC-CCCh--HHHHHHHHHHhhCCHHHHHHHHHHHHHh---ccHhhhhHHHHHHHHhhccHHH---HHHH
Confidence 8887776666552 2222 222221 112345667776655443331 24344443332 2222111222 2222
Q ss_pred HHhCCC------CCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 038622 186 MILRDC------SPNTITYNTLISTLCKENQVEEATELARVLTSKG 225 (587)
Q Consensus 186 ~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 225 (587)
+..... ..-..++.-++.-+...|+.++|..+|+.....+
T Consensus 222 ~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 222 LKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 222110 1124578888999999999999999998887753
No 252
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.81 E-value=0.11 Score=50.18 Aligned_cols=97 Identities=16% Similarity=0.150 Sum_probs=45.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 038622 407 TYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLC 486 (587)
Q Consensus 407 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 486 (587)
+...+...+.+...+..|.++|.++-.. ..+.......++|.+|..+.++..+. .|+ .|...++.++
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~d--Vy~pyaqwLA 815 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDD--VYMPYAQWLA 815 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--ccc--ccchHHHHhh
Confidence 3344444444444555555555544321 13344455556666666655554432 222 1223333344
Q ss_pred hCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 038622 487 NGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMD 539 (587)
Q Consensus 487 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 539 (587)
+..+ +++|.+. |.+.|+-.||.++++++..
T Consensus 816 E~Dr-FeEAqkA----------------------fhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 816 ENDR-FEEAQKA----------------------FHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhhh-HHHHHHH----------------------HHHhcchHHHHHHHHHhhh
Confidence 4444 5555444 4445556666666666543
No 253
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.81 E-value=0.0013 Score=36.51 Aligned_cols=31 Identities=19% Similarity=0.276 Sum_probs=25.5
Q ss_pred HHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHH
Q 038622 499 VIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLV 531 (587)
Q Consensus 499 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 531 (587)
|+++++ +.| ++.+|..|+.+|...|++++|+
T Consensus 2 y~kAie--~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIE--LNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHH--HCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 577777 456 7888999999999999998886
No 254
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.77 E-value=0.02 Score=45.71 Aligned_cols=71 Identities=25% Similarity=0.299 Sum_probs=48.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCCHHHH
Q 038622 407 TYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMME-----KADPPDALTY 478 (587)
Q Consensus 407 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~ 478 (587)
....++..+...|++++|..+++++....+- +...|..++.++...|+..+|++.|+++.+ .|++|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 4556666777788888888888888886443 567888888888888888888888887764 3667776654
No 255
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.71 E-value=0.12 Score=48.48 Aligned_cols=63 Identities=13% Similarity=0.210 Sum_probs=44.0
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 038622 440 PQAYNPVIQALFRRKRTTEAMRLFREMMEKADPP--DALTYKHVFRGLCNGGGPIGEAVDFVIEMLE 504 (587)
Q Consensus 440 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 504 (587)
..+-..++.++.+.|+.++|++.+.++++.. |. .......++..+...+. +.++..++.+--+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~-p~~~~l~IrenLie~LLelq~-Yad~q~lL~kYdD 323 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEF-PNLDNLNIRENLIEALLELQA-YADVQALLAKYDD 323 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhC-CccchhhHHHHHHHHHHhcCC-HHHHHHHHHHhcc
Confidence 3444567777788888888888888887642 32 22345567777778888 8888888887543
No 256
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.71 E-value=0.22 Score=39.49 Aligned_cols=126 Identities=16% Similarity=0.143 Sum_probs=83.1
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCCh-HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH-HH--HHHHHHHHhCCC
Q 038622 415 LCKAGRVEVASKLLRSIQMKGIVLTP-QAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDAL-TY--KHVFRGLCNGGG 490 (587)
Q Consensus 415 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~--~~l~~~~~~~~~ 490 (587)
+.+.+..++|+.-|..+.+.|...-+ ......+......|+...|...|.++-.....|... .. ..-...+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 34667888888888888776544222 334455666777888888888888887643222221 11 122334567777
Q ss_pred CHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCC
Q 038622 491 PIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAK 542 (587)
Q Consensus 491 ~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 542 (587)
|++...-.+.+...+ .| ...+...|+-.-++.|++.+|.++|..+.....
T Consensus 148 -y~dV~srvepLa~d~-n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ 198 (221)
T COG4649 148 -YDDVSSRVEPLAGDG-NPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQ 198 (221)
T ss_pred -HHHHHHHhhhccCCC-ChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcccc
Confidence 888777777665433 34 566677888888888999999998888776443
No 257
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.68 E-value=0.0048 Score=34.37 Aligned_cols=32 Identities=19% Similarity=0.323 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHccCCHhHHHHHHHHHHhcCCC
Q 038622 512 SSFYMLAEGLVSLGKEETLVELIDMVMDKAKF 543 (587)
Q Consensus 512 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 543 (587)
.+|..+|.+|...|++++|+..++++++.+|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46788888999999999999999999888875
No 258
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.68 E-value=0.78 Score=45.50 Aligned_cols=110 Identities=18% Similarity=0.170 Sum_probs=68.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHH
Q 038622 337 TYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLC 416 (587)
Q Consensus 337 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 416 (587)
+.+.-+.-+...|+..+|.++-.+.. -||...|-.-+.+++..+++++-.++-+... ++.-|.-....|.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACL 755 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHH
Confidence 34444455566677777776655543 3566666666777777777776655544332 2344666677777
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHH
Q 038622 417 KAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFRE 465 (587)
Q Consensus 417 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 465 (587)
+.|+.++|.+++-+.... . ....+|.+.|++.+|.++--+
T Consensus 756 ~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred hcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHHHHHHH
Confidence 778888887777654321 1 455667777777777765443
No 259
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.66 E-value=0.3 Score=41.16 Aligned_cols=204 Identities=13% Similarity=0.123 Sum_probs=91.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHc
Q 038622 198 YNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCS 277 (587)
Q Consensus 198 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 277 (587)
|..-..+|....++++|...+.+..+. ...+...|. ....++.|.-+.+++... +.-...+......|..
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence 444445566666777777666655432 111111111 112233444444444332 1112333444445555
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc---CC--CCCHHHHHHHHHHHHhcCCHH
Q 038622 278 RGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQ---GI--SRNSVTYNTLIDGLCKSRRVE 352 (587)
Q Consensus 278 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~--~~~~~~~~~l~~~~~~~~~~~ 352 (587)
.|.++.|-..++++-+. ...-++++|+++|++.... +- ......+......+.+...++
T Consensus 104 ~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~ 167 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFT 167 (308)
T ss_pred hCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhh
Confidence 55555555555444321 2223444555555443221 00 001122333444556666666
Q ss_pred HHHHHHHHHHHc----CCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCCcchHHHHHHHHHhcCChHHH
Q 038622 353 DAAQLMDQMIME----GLKPDK-FTYNSLLTYYCRAGDIKRAADIVQNMTSNGC---EPDIVTYGTLIGGLCKAGRVEVA 424 (587)
Q Consensus 353 ~A~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a 424 (587)
+|...+.+-... ..-++. ..+...+..+....|+..|...++.--+.+- ..+..+...|+.+| ..|+.+++
T Consensus 168 Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~ 246 (308)
T KOG1585|consen 168 EAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEI 246 (308)
T ss_pred HHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHH
Confidence 665554443211 011121 2344444555566677777777776444211 11344555566554 45666666
Q ss_pred HHHH
Q 038622 425 SKLL 428 (587)
Q Consensus 425 ~~~~ 428 (587)
.+++
T Consensus 247 ~kvl 250 (308)
T KOG1585|consen 247 KKVL 250 (308)
T ss_pred HHHH
Confidence 5554
No 260
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.49 E-value=0.66 Score=42.39 Aligned_cols=104 Identities=21% Similarity=0.252 Sum_probs=54.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 038622 234 NSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKL 313 (587)
Q Consensus 234 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 313 (587)
+..+..+...|+...|.++-.+.. -|+...|...+.+++..++|++-..+-.. ..++..|..++.++.+.
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKY 250 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHC
Confidence 333444455566655555544432 35566666666666666666655443221 12334555666666666
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038622 314 KRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQL 357 (587)
Q Consensus 314 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 357 (587)
|+..+|..+..++ ++ ..-+..|.+.|++.+|.+.
T Consensus 251 ~~~~eA~~yI~k~-----~~-----~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 251 GNKKEASKYIPKI-----PD-----EERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred CCHHHHHHHHHhC-----Ch-----HHHHHHHHHCCCHHHHHHH
Confidence 6666666555441 11 2344555666666666544
No 261
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.47 E-value=0.0099 Score=35.52 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=9.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 038622 445 PVIQALFRRKRTTEAMRLFREMME 468 (587)
Q Consensus 445 ~l~~~~~~~g~~~~A~~~~~~~~~ 468 (587)
.++..|...|++++|+++|+++++
T Consensus 6 ~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 6 ALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333444444444444444444443
No 262
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.40 E-value=0.52 Score=44.49 Aligned_cols=152 Identities=14% Similarity=0.128 Sum_probs=79.1
Q ss_pred HHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 038622 25 ILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEG 104 (587)
Q Consensus 25 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 104 (587)
.++.-..+..+.+.-++.-.++++.+ +.....|..+..- ......++.++++++.+.+- ..+ ......
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~-pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE----~~l---g~s~~~-- 240 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEIN-PDCADAYILLAEE--EASTIVEAEELLRQAVKAGE----ASL---GKSQFL-- 240 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhh-hhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHH----Hhh---chhhhh--
Confidence 44555566666666666666666543 2222333333221 23346677777777665431 000 000000
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCcccHHHHHHHHHhcCCHHHHHHHH
Q 038622 105 RIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFD-PDVFTYNSLISGLCKLGEVEEAVEIL 183 (587)
Q Consensus 105 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~ 183 (587)
+..-...+........+-..+-..+..++.+.|+.++|++.++++.+.... ....+...++.++...+.+.++..++
T Consensus 241 --~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL 318 (539)
T PF04184_consen 241 --QHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALL 318 (539)
T ss_pred --hcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 000011111222222222334445666677778888888888888764221 12346667788888888888888888
Q ss_pred HHHHhCC
Q 038622 184 NQMILRD 190 (587)
Q Consensus 184 ~~~~~~~ 190 (587)
.+..+..
T Consensus 319 ~kYdDi~ 325 (539)
T PF04184_consen 319 AKYDDIS 325 (539)
T ss_pred HHhcccc
Confidence 7765443
No 263
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.40 E-value=0.89 Score=42.90 Aligned_cols=95 Identities=9% Similarity=0.133 Sum_probs=68.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038622 442 AYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGL--CNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAE 519 (587)
Q Consensus 442 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 519 (587)
.-+.+...+...|-+.+|...|....... ||+...+..++..- ....+ ..-+..+|+.|+.. +..++..|.....
T Consensus 462 l~s~~l~~~~e~~~~~~ark~y~~l~~lp-p~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~-fg~d~~lw~~y~~ 538 (568)
T KOG2396|consen 462 LKSKYLDWAYESGGYKKARKVYKSLQELP-PFSLDLFRKMIQFEKEQESCN-LANIREYYDRALRE-FGADSDLWMDYMK 538 (568)
T ss_pred hhHHHHHHHHHhcchHHHHHHHHHHHhCC-CccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHH-hCCChHHHHHHHH
Confidence 34567777788888899999998888863 66666777766542 23334 67788888888853 3367888877666
Q ss_pred HHHccCCHhHHHHHHHHHHh
Q 038622 520 GLVSLGKEETLVELIDMVMD 539 (587)
Q Consensus 520 ~~~~~g~~~~A~~~~~~~~~ 539 (587)
.-...|..+.+-.++-++.+
T Consensus 539 ~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 539 EELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred hhccCCCcccccHHHHHHHH
Confidence 66688888888887777665
No 264
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.33 E-value=0.76 Score=41.39 Aligned_cols=160 Identities=18% Similarity=0.190 Sum_probs=81.7
Q ss_pred HhcCChHHHHHHHHHHHHcC--CCCCH-----HhHHHHHHHHHccC-ChHHHHHHHHHHHHC----C----CCCC-----
Q 038622 241 CLTSNFDVAMELFQEMKTKG--CQPDE-----FTYNMLIDSLCSRG-MLEEALKLLKEMESS----G----CARN----- 299 (587)
Q Consensus 241 ~~~~~~~~a~~~~~~~~~~~--~~~~~-----~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~----~----~~~~----- 299 (587)
.+.|+.+.|..++.++.... ..|+. ..+..++......+ +++.|..++++..+. + ..++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 34566666666666665432 12221 23344444455556 777777776665432 1 1111
Q ss_pred HHHHHHHHHHHHccCCHH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHH
Q 038622 300 VVTYNTLIDGFCKLKRIE---EAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSL 376 (587)
Q Consensus 300 ~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 376 (587)
..++..++.++...+..+ +|..+++.+... .+..+..+..-+..+.+.++.+.+.+.+.+|+..- .-....+...
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~ 161 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHH
Confidence 134556667777666544 444455555333 23345555566666666777788888888887752 2122233333
Q ss_pred HHHH---HhcCCHHHHHHHHHHHHHCCCCC
Q 038622 377 LTYY---CRAGDIKRAADIVQNMTSNGCEP 403 (587)
Q Consensus 377 ~~~~---~~~~~~~~A~~~~~~~~~~~~~~ 403 (587)
+..+ .. .....+...+..++...+.|
T Consensus 162 l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~ 190 (278)
T PF08631_consen 162 LHHIKQLAE-KSPELAAFCLDYLLLNRFKS 190 (278)
T ss_pred HHHHHHHHh-hCcHHHHHHHHHHHHHHhCC
Confidence 3332 22 23345555555554433333
No 265
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.31 E-value=0.13 Score=42.60 Aligned_cols=68 Identities=21% Similarity=0.339 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc----------------CChHHHHHHHHHHHHcCCCCCHHhHHHHH
Q 038622 209 NQVEEATELARVLTSKGILPDVCTFNSLIQGLCLT----------------SNFDVAMELFQEMKTKGCQPDEFTYNMLI 272 (587)
Q Consensus 209 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 272 (587)
|..+=....++.|.+.|+..|..+|+.|+.++=+. .+-+-|++++++|...|+-||..++..++
T Consensus 66 GHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll 145 (228)
T PF06239_consen 66 GHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLL 145 (228)
T ss_pred ChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 44555555555666666666666666666554321 12233444555555555555555555444
Q ss_pred HHHH
Q 038622 273 DSLC 276 (587)
Q Consensus 273 ~~~~ 276 (587)
..+.
T Consensus 146 ~iFG 149 (228)
T PF06239_consen 146 NIFG 149 (228)
T ss_pred HHhc
Confidence 4443
No 266
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.30 E-value=0.79 Score=41.29 Aligned_cols=191 Identities=10% Similarity=0.033 Sum_probs=96.7
Q ss_pred HHhcC-CHHHHHHHHHHHHHc--------CCCCCH-----hhHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCCcch
Q 038622 345 LCKSR-RVEDAAQLMDQMIME--------GLKPDK-----FTYNSLLTYYCRAGDIK---RAADIVQNMTSNGCEPDIVT 407 (587)
Q Consensus 345 ~~~~~-~~~~A~~~~~~~~~~--------~~~~~~-----~~~~~l~~~~~~~~~~~---~A~~~~~~~~~~~~~~~~~~ 407 (587)
....+ +++.|...++++.+. ...|+. .++..++.++...+..+ +|..+++.+...... .+..
T Consensus 45 l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~ 123 (278)
T PF08631_consen 45 LLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEV 123 (278)
T ss_pred HHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHH
Confidence 34445 777777666665542 122232 24566677777766654 455555555443222 2444
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHH---HhcCCHHHHHHHHHHHHhcCCCCCHH-HHH-HHH
Q 038622 408 YGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQAL---FRRKRTTEAMRLFREMMEKADPPDAL-TYK-HVF 482 (587)
Q Consensus 408 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~-~l~ 482 (587)
+..-+..+.+.++.+++.+++.+|...- ......+..++..+ .. .....|...+..++..-..|... ... .++
T Consensus 124 ~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl 201 (278)
T PF08631_consen 124 FLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILHHIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQWLEKLVL 201 (278)
T ss_pred HHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 5455666666788888888888888752 11223333333333 33 33456666666665542333332 111 111
Q ss_pred ---HHHHhCCC---C--HHHHHHHHHHHHHcCCCC-CHH-------HHHHHHHHHHccCCHhHHHHHHHHHH
Q 038622 483 ---RGLCNGGG---P--IGEAVDFVIEMLERGFLP-EFS-------SFYMLAEGLVSLGKEETLVELIDMVM 538 (587)
Q Consensus 483 ---~~~~~~~~---~--~~~A~~~~~~~~~~~~~p-~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~ 538 (587)
......++ . .+....++....+....| +.. .++..+..+++.++|++|.++|+-++
T Consensus 202 ~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 202 TRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 11112111 0 222333333222211122 322 23445567788999999999998665
No 267
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.24 E-value=0.31 Score=38.65 Aligned_cols=53 Identities=8% Similarity=0.020 Sum_probs=25.0
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 038622 171 CKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTS 223 (587)
Q Consensus 171 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 223 (587)
...|.++....-.+.+...+-+....+...|+-+-.+.|++.+|..+|.++..
T Consensus 143 vD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 34455555555444444333222333344444455555555555555555544
No 268
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.23 E-value=0.15 Score=45.03 Aligned_cols=159 Identities=15% Similarity=0.053 Sum_probs=119.1
Q ss_pred HHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc-C--CCCChhhHHHHHHHHHhcC
Q 038622 28 KALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEH-G--CLVTNVTVNVLVHGFCKEG 104 (587)
Q Consensus 28 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~--~~~~~~~~~~l~~~~~~~~ 104 (587)
..+..+|++.+|-..++++++.. |.|.-.+.-.=.+++-.|+.+.-...+++++.. + .|....+...+.-++...|
T Consensus 111 ai~~~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 111 AILWGRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred HHhhccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence 34567899999999999888754 778777777778899999999999999998865 2 3333444555566777899
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---cccHHHHHHHHHhcCCHHHHHH
Q 038622 105 RIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPD---VFTYNSLISGLCKLGEVEEAVE 181 (587)
Q Consensus 105 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~ 181 (587)
-+++|.+.-++.++.+ +-|..+......++--.|+++++.+...+-...--... ..-|-..+-.+...+.++.|++
T Consensus 190 ~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale 268 (491)
T KOG2610|consen 190 IYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE 268 (491)
T ss_pred cchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence 9999999999999876 66788888899999999999999998876543211111 1223334556667799999999
Q ss_pred HHHHHHh
Q 038622 182 ILNQMIL 188 (587)
Q Consensus 182 ~~~~~~~ 188 (587)
+|+.-+-
T Consensus 269 IyD~ei~ 275 (491)
T KOG2610|consen 269 IYDREIW 275 (491)
T ss_pred HHHHHHH
Confidence 9987543
No 269
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.19 E-value=0.97 Score=41.26 Aligned_cols=184 Identities=16% Similarity=0.085 Sum_probs=107.0
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHh----
Q 038622 346 CKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCR----AGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCK---- 417 (587)
Q Consensus 346 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 417 (587)
...+++..+...+......+ +......+...|.. ..+...|..+|....+.|. ......|+..|..
T Consensus 52 ~~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv 125 (292)
T COG0790 52 AYPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL---AEALFNLGLMYANGRGV 125 (292)
T ss_pred cccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCc
Confidence 34567888888888777643 22344444444433 2457778888886666543 3345556666654
Q ss_pred cCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC-------CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhC--
Q 038622 418 AGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRK-------RTTEAMRLFREMMEKADPPDALTYKHVFRGLCNG-- 488 (587)
Q Consensus 418 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 488 (587)
..+..+|..+++++.+.|..+.......++..+.... +...|...|.++...+ +......++..|..-
T Consensus 126 ~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~G 202 (292)
T COG0790 126 PLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLG 202 (292)
T ss_pred ccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCC
Confidence 3478888888888887654422233555555555431 2336777787777765 333333444433221
Q ss_pred -CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC---------------CHhHHHHHHHHHHhcCC
Q 038622 489 -GGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLG---------------KEETLVELIDMVMDKAK 542 (587)
Q Consensus 489 -~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~~~~~~~ 542 (587)
..+.++|...|.++.+.| . ......++ .+...| +...|..++.......+
T Consensus 203 v~~d~~~A~~wy~~Aa~~g--~-~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 203 VPRDLKKAFRWYKKAAEQG--D-GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred CCcCHHHHHHHHHHHHHCC--C-HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence 123778888888888765 2 56666666 555555 45555555555555444
No 270
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.17 E-value=1.2 Score=42.06 Aligned_cols=65 Identities=15% Similarity=0.051 Sum_probs=41.1
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038622 369 DKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEP---DIVTYGTLIGGLCKAGRVEVASKLLRSIQM 433 (587)
Q Consensus 369 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 433 (587)
...++..++..+.+.|.++.|...+..+...+... .+.....-+..+...|+..+|+..++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34456667777777777777777777766543111 234445556666667777777777776666
No 271
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=96.13 E-value=0.26 Score=40.95 Aligned_cols=32 Identities=41% Similarity=0.504 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc
Q 038622 352 EDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRA 383 (587)
Q Consensus 352 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 383 (587)
+-|++++++|...|+-||.+++..+++.+.+.
T Consensus 120 ~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~ 151 (228)
T PF06239_consen 120 ECAIDLLEQMENNGVMPDKETEQMLLNIFGRK 151 (228)
T ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHhccc
Confidence 34555555555555555555555555555433
No 272
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.10 E-value=0.01 Score=32.73 Aligned_cols=31 Identities=19% Similarity=0.323 Sum_probs=25.2
Q ss_pred HHHHHHHHHHccCCHhHHHHHHHHHHhcCCC
Q 038622 513 SFYMLAEGLVSLGKEETLVELIDMVMDKAKF 543 (587)
Q Consensus 513 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 543 (587)
++..++.++.+.|++++|++.++++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 5667888888888888888888888887775
No 273
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=96.05 E-value=0.037 Score=44.20 Aligned_cols=53 Identities=19% Similarity=0.240 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCC-----------HhHHHHHHHHHHhcCCCCCch
Q 038622 493 GEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGK-----------EETLVELIDMVMDKAKFSDRE 547 (587)
Q Consensus 493 ~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~~~~~~~~ 547 (587)
++|+.-|++++. +.| ...++..+|.+|...+. +++|...|+++.+.+|.++.+
T Consensus 52 edAisK~eeAL~--I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y 116 (186)
T PF06552_consen 52 EDAISKFEEALK--INPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELY 116 (186)
T ss_dssp HHHHHHHHHHHH--H-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHH
T ss_pred HHHHHHHHHHHh--cCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 334444444444 445 34566666665554322 566666666666677766543
No 274
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.95 E-value=0.72 Score=37.63 Aligned_cols=91 Identities=12% Similarity=0.103 Sum_probs=45.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC--cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC
Q 038622 377 LTYYCRAGDIKRAADIVQNMTSNGCEPD--IVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRK 454 (587)
Q Consensus 377 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 454 (587)
...+...+++++|...++.......+.+ ..+-..|++.....|.+++|++.++.....+.. ......-+..+...|
T Consensus 96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~kg 173 (207)
T COG2976 96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHcC
Confidence 3445566666666666665554211111 111233455555666666666666554442211 122233455566666
Q ss_pred CHHHHHHHHHHHHhc
Q 038622 455 RTTEAMRLFREMMEK 469 (587)
Q Consensus 455 ~~~~A~~~~~~~~~~ 469 (587)
+.++|+.-|++++..
T Consensus 174 ~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 174 DKQEARAAYEKALES 188 (207)
T ss_pred chHHHHHHHHHHHHc
Confidence 666666666666654
No 275
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.91 E-value=0.3 Score=46.83 Aligned_cols=105 Identities=17% Similarity=0.139 Sum_probs=48.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhc
Q 038622 128 YNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCK 207 (587)
Q Consensus 128 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 207 (587)
...++..+.+.|..+.|+.+... +. .-.....+.|+++.|.++.++ ..+...|..|+.....
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D---------~~---~rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~ 359 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTD---------PD---HRFELALQLGNLDIALEIAKE------LDDPEKWKQLGDEALR 359 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCC---------hH---HHhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHH
Confidence 44555555555555555554322 11 123344555555555554332 1244455555555555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038622 208 ENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTK 259 (587)
Q Consensus 208 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 259 (587)
.|+++-|+..|.+..+ +..++-.|...|+.+.-.++.+.....
T Consensus 360 ~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 360 QGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp TTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 5555555555544321 334444455555555555544444443
No 276
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=95.88 E-value=1.6 Score=41.00 Aligned_cols=122 Identities=15% Similarity=0.162 Sum_probs=67.8
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHH
Q 038622 66 IEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQAL 145 (587)
Q Consensus 66 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 145 (587)
...|+.-.|-+-+..++... +..+.............|+++.+...+....+. +.....+...+++...+.|++++|.
T Consensus 300 ~~~gd~~aas~~~~~~lr~~-~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQ-QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hhccCHHHHHHHHHHHHHhC-CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHH
Confidence 35566666655554444432 333333333444556667777777666555432 2233445566666666777777777
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038622 146 EVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRD 190 (587)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 190 (587)
..-+-|+...+. +++.....+...-..|-++++...++++...+
T Consensus 378 s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 378 STAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 776666655443 33333333333444566677777777766554
No 277
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.83 E-value=0.015 Score=32.80 Aligned_cols=27 Identities=15% Similarity=0.171 Sum_probs=19.6
Q ss_pred HHHHHHHHHHccCCHhHHHHHHHHHHh
Q 038622 513 SFYMLAEGLVSLGKEETLVELIDMVMD 539 (587)
Q Consensus 513 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 539 (587)
++..|+.+|.+.|++++|++++++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356788888888888888888888543
No 278
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=95.83 E-value=0.028 Score=49.42 Aligned_cols=95 Identities=15% Similarity=0.001 Sum_probs=55.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Q 038622 411 LIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGG 490 (587)
Q Consensus 411 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 490 (587)
-+.-|.++|.+++|+.+|.+.....+. ++..+..-+.+|.+..++..|..-...++..+ ..-...|..-+.+-...|.
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhh
Confidence 355566677777777777666653221 55556666666777666666666666665542 2222334444445555566
Q ss_pred CHHHHHHHHHHHHHcCCCCC
Q 038622 491 PIGEAVDFVIEMLERGFLPE 510 (587)
Q Consensus 491 ~~~~A~~~~~~~~~~~~~p~ 510 (587)
..+|.+-++.+++ +.|+
T Consensus 181 -~~EAKkD~E~vL~--LEP~ 197 (536)
T KOG4648|consen 181 -NMEAKKDCETVLA--LEPK 197 (536)
T ss_pred -HHHHHHhHHHHHh--hCcc
Confidence 6666666666666 4453
No 279
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.79 E-value=1.8 Score=40.88 Aligned_cols=43 Identities=14% Similarity=0.008 Sum_probs=28.4
Q ss_pred HHHHHHHHHHcc------CCHhHHHHHHHHHHhcCCCCC-chhhhhhhHH
Q 038622 513 SFYMLAEGLVSL------GKEETLVELIDMVMDKAKFSD-RETSMVRGFL 555 (587)
Q Consensus 513 ~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~ 555 (587)
++..++.-.... ++.+++...|+.+.+..|... .+..++..+.
T Consensus 254 ~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~ 303 (352)
T PF02259_consen 254 AFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFND 303 (352)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHH
Confidence 444555555555 788888899999888888653 4555555433
No 280
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.75 E-value=2.5 Score=42.44 Aligned_cols=76 Identities=22% Similarity=0.132 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHH
Q 038622 281 LEEALKLLKEMESSGCARNVVTYNTLIDGFCKL----KRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCK----SRRVE 352 (587)
Q Consensus 281 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~ 352 (587)
...+...+.+....| +......+...|..- .+++.|...+......+ ......+...+.. .. +.
T Consensus 455 ~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~-~~ 526 (552)
T KOG1550|consen 455 LERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKV-LH 526 (552)
T ss_pred hhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcch-hH
Confidence 444555555555443 344445555544432 34666666666665543 3333334433321 23 56
Q ss_pred HHHHHHHHHHHc
Q 038622 353 DAAQLMDQMIME 364 (587)
Q Consensus 353 ~A~~~~~~~~~~ 364 (587)
.|.+++++....
T Consensus 527 ~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 527 LAKRYYDQASEE 538 (552)
T ss_pred HHHHHHHHHHhc
Confidence 777777776654
No 281
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.68 E-value=0.022 Score=31.64 Aligned_cols=32 Identities=19% Similarity=0.293 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHccCCHhHHHHHHHHHHhcCCC
Q 038622 512 SSFYMLAEGLVSLGKEETLVELIDMVMDKAKF 543 (587)
Q Consensus 512 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 543 (587)
.++..++.+|.+.|++++|...++++++.+|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 45778888888899999999999988887773
No 282
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.67 E-value=0.48 Score=45.48 Aligned_cols=81 Identities=19% Similarity=0.283 Sum_probs=34.4
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 038622 159 DVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQ 238 (587)
Q Consensus 159 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 238 (587)
+...|..++......|+++-|++.|.+.. -+..|+-.|...|+.+.-.++.+.....| -++....
T Consensus 346 ~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~ 410 (443)
T PF04053_consen 346 DPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQ 410 (443)
T ss_dssp THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHH
Confidence 34455555555555555555555554421 12333444444555444444444443332 1233333
Q ss_pred HHHhcCChHHHHHHHH
Q 038622 239 GLCLTSNFDVAMELFQ 254 (587)
Q Consensus 239 ~~~~~~~~~~a~~~~~ 254 (587)
++...|+.++..+++.
T Consensus 411 ~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 411 AALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHT-HHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHH
Confidence 3444455555444443
No 283
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.61 E-value=2.8 Score=41.88 Aligned_cols=109 Identities=19% Similarity=0.274 Sum_probs=62.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHH
Q 038622 372 TYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALF 451 (587)
Q Consensus 372 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 451 (587)
+.+.-+.-+...|+..+|.++-.+.. -|+...|..-+.++...+++++-.++-+... ++.-|.....+|.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACL 755 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHH
Confidence 34444555566677777766665543 2466666666677777777766555543322 2344555666777
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 038622 452 RRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVI 500 (587)
Q Consensus 452 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~ 500 (587)
+.|+.++|.+++-+.... . ....+|.+.|+ +.+|.+..-
T Consensus 756 ~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~-~~eAad~A~ 794 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGD-VKEAADLAA 794 (829)
T ss_pred hcccHHHHhhhhhccCCh-----H----HHHHHHHHhcc-HHHHHHHHH
Confidence 777777777766654321 1 33445566666 666655443
No 284
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.46 E-value=2.3 Score=40.07 Aligned_cols=60 Identities=22% Similarity=0.121 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC---CchhhhhhhHHHHHHHHHHHHhcchhh
Q 038622 512 SSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS---DRETSMVRGFLKIRKFQDALATFGDIL 571 (587)
Q Consensus 512 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~~~ 571 (587)
..+..|+.+|.-.|++++|..++..+...-+.- .....-...-++.|+-..|+..+++-.
T Consensus 620 v~~~nLa~a~alq~~~dqAk~ll~~aatl~hs~v~~~A~~lavyidL~~G~~q~al~~lk~~~ 682 (696)
T KOG2471|consen 620 VLFANLAAALALQGHHDQAKSLLTHAATLLHSLVNVQATVLAVYIDLMLGRSQDALARLKQCT 682 (696)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhhhccccHHHHHHHHHHHHhcCCCcchHHHHHhcc
Confidence 356789999999999999999998777666522 111222223457888888888877643
No 285
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.35 E-value=0.24 Score=39.08 Aligned_cols=115 Identities=19% Similarity=0.164 Sum_probs=78.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHH
Q 038622 445 PVIQALFRRKRTTEAMRLFREMMEKADPPDALTY-KHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLV 522 (587)
Q Consensus 445 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 522 (587)
.++..-...++.+++..++..+.-. .|..... ..-++.+...|+ |.+|+.+++.+.+. .| .+..-..++.++.
T Consensus 15 e~~~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~-w~dA~rlLr~l~~~--~~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 15 EVLSVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGD-WDDALRLLRELEER--APGFPYAKALLALCLY 89 (160)
T ss_pred HHHHHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCC-HHHHHHHHHHHhcc--CCCChHHHHHHHHHHH
Confidence 3445556788999999999999885 4544333 344556778888 99999999998764 35 4555566777777
Q ss_pred ccCCHhHHHHHHHHHHhcCCCCCchhhhhhhHHHHHHHHHHHHh
Q 038622 523 SLGKEETLVELIDMVMDKAKFSDRETSMVRGFLKIRKFQDALAT 566 (587)
Q Consensus 523 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 566 (587)
..|+.+ =..+.+.+++.++++ ....++..+........|...
T Consensus 90 ~~~D~~-Wr~~A~evle~~~d~-~a~~Lv~~Ll~~~~~~~a~~~ 131 (160)
T PF09613_consen 90 ALGDPS-WRRYADEVLESGADP-DARALVRALLARADLEPAHEA 131 (160)
T ss_pred HcCChH-HHHHHHHHHhcCCCh-HHHHHHHHHHHhccccchhhh
Confidence 777643 344455666666644 346666777777766666653
No 286
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=95.24 E-value=0.034 Score=48.98 Aligned_cols=98 Identities=9% Similarity=0.041 Sum_probs=82.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 038622 444 NPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVS 523 (587)
Q Consensus 444 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 523 (587)
..-+.-|+++|.+++|+.+|.+.+... |-++.++..-+.+|.+... +..|..-...++..+ +.-..+|...+.+-..
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~-FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~ 177 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKS-FAQAEEDCEAAIALD-KLYVKAYSRRMQARES 177 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHH-HHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHH
Confidence 345788999999999999999999863 4488888888889999998 999998888888632 2246778888888889
Q ss_pred cCCHhHHHHHHHHHHhcCCCC
Q 038622 524 LGKEETLVELIDMVMDKAKFS 544 (587)
Q Consensus 524 ~g~~~~A~~~~~~~~~~~~~~ 544 (587)
.|+..+|.+-++.+++..|.+
T Consensus 178 Lg~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 178 LGNNMEAKKDCETVLALEPKN 198 (536)
T ss_pred HhhHHHHHHhHHHHHhhCccc
Confidence 999999999999999999986
No 287
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=95.20 E-value=0.1 Score=41.77 Aligned_cols=88 Identities=10% Similarity=0.096 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcc----------CCHhHHHHHHHHHHhcCCCC-CchhhhhhhHHHHH--
Q 038622 492 IGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSL----------GKEETLVELIDMVMDKAKFS-DRETSMVRGFLKIR-- 558 (587)
Q Consensus 492 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-- 558 (587)
++.|.+.++.....+ +.|.+.+..-+.++..+ .-+++|+.-++.++..+|+. ++.+.|+.+|..++
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 556666666655533 22666666555554433 23567888888899999987 67788888877655
Q ss_pred ---------HHHHHHHhcchhhhccCchhhh
Q 038622 559 ---------KFQDALATFGDILDSRMPRKTF 580 (587)
Q Consensus 559 ---------~~~~A~~~~~~~~~~~~~~~~~ 580 (587)
.|++|...|+++.+..|..+.+
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y 116 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVDEDPNNELY 116 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH-TT-HHH
T ss_pred cCChHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 4788888888888877665543
No 288
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.01 E-value=1.1 Score=33.81 Aligned_cols=66 Identities=14% Similarity=0.067 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCC
Q 038622 475 ALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAK 542 (587)
Q Consensus 475 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 542 (587)
.......+..+...|+ -+.-.+++..+.+.+ .+++..+..++.+|.+.|+..++.++++++.+.+-
T Consensus 86 se~vD~ALd~lv~~~k-kDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 86 SEYVDLALDILVKQGK-KDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp -HHHHHHHHHHHHTT--HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHhcc-HHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3334445556667777 666667777766433 57788888888888888888888888888877664
No 289
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.88 E-value=0.3 Score=40.22 Aligned_cols=96 Identities=9% Similarity=-0.014 Sum_probs=58.3
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHH----
Q 038622 441 QAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDA--LTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSS---- 513 (587)
Q Consensus 441 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~---- 513 (587)
..+..++..|.+.|+.++|++.|.++.+....+.. ..+..++......++ +..+..++.++...--.+ +...
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d-~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGD-WSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 46677888888888888888888888776433332 234566666777777 888888877776421111 2111
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHH
Q 038622 514 FYMLAEGLVSLGKEETLVELIDMV 537 (587)
Q Consensus 514 ~~~l~~~~~~~g~~~~A~~~~~~~ 537 (587)
-..-|-.+...|+|.+|-+.|-..
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHcc
Confidence 122233344566677666666544
No 290
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.79 E-value=0.27 Score=38.05 Aligned_cols=91 Identities=18% Similarity=0.060 Sum_probs=58.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccC
Q 038622 448 QALFRRKRTTEAMRLFREMMEKADPPDAL-TYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLG 525 (587)
Q Consensus 448 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 525 (587)
..-...++.+++..++..+.-. .|+.. .-..-++.+...|+ |++|..+++...+.+ + .+..-..++.++.-.|
T Consensus 18 ~~aL~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~-w~eA~rvlr~l~~~~--~~~p~~kAL~A~CL~al~ 92 (153)
T TIGR02561 18 MYALRSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGN-YDEAARILRELLSSA--GAPPYGKALLALCLNAKG 92 (153)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCC-HHHHHHHHHhhhccC--CCchHHHHHHHHHHHhcC
Confidence 3444578899999999988875 44333 33334555677888 999999999988743 3 3555566777777777
Q ss_pred CHhHHHHHHHHHHhcCCCC
Q 038622 526 KEETLVELIDMVMDKAKFS 544 (587)
Q Consensus 526 ~~~~A~~~~~~~~~~~~~~ 544 (587)
+.+- ..+...+++.++..
T Consensus 93 Dp~W-r~~A~~~le~~~~~ 110 (153)
T TIGR02561 93 DAEW-HVHADEVLARDADA 110 (153)
T ss_pred ChHH-HHHHHHHHHhCCCH
Confidence 6542 23333444544444
No 291
>PRK11619 lytic murein transglycosylase; Provisional
Probab=94.73 E-value=5.7 Score=40.61 Aligned_cols=50 Identities=6% Similarity=-0.053 Sum_probs=31.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHH
Q 038622 412 IGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFR 464 (587)
Q Consensus 412 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 464 (587)
+..+...|....|...+..+... .+......++......|.++.++....
T Consensus 414 a~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~ 463 (644)
T PRK11619 414 VRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATI 463 (644)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHh
Confidence 34455667777887777777663 244445555566666677666665544
No 292
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.70 E-value=0.57 Score=35.82 Aligned_cols=49 Identities=10% Similarity=0.101 Sum_probs=26.7
Q ss_pred CCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHH
Q 038622 436 IVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEK-ADPPDALTYKHVFRG 484 (587)
Q Consensus 436 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~ 484 (587)
..|+......++.+|+..|++..|+++.+...+. +++.+..+|..++.-
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3455555555566665556666666665555553 344445555555543
No 293
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=94.69 E-value=3.4 Score=37.85 Aligned_cols=101 Identities=14% Similarity=0.222 Sum_probs=49.6
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCH
Q 038622 307 IDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDI 386 (587)
Q Consensus 307 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 386 (587)
+.-+...|+...|.++-.+.. -|+...|...+.+++..++|++-..+... .-++.-|..++.+|...|+.
T Consensus 184 i~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~ 253 (319)
T PF04840_consen 184 IRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNK 253 (319)
T ss_pred HHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCH
Confidence 333444555555555443331 34555555566666666666555443221 11234455555556666666
Q ss_pred HHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHH
Q 038622 387 KRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKL 427 (587)
Q Consensus 387 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 427 (587)
.+|..+..++ + +..-+..|.+.|++.+|.+.
T Consensus 254 ~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 254 KEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHH
Confidence 5555555441 1 12334455555555555444
No 294
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.67 E-value=0.081 Score=29.80 Aligned_cols=25 Identities=8% Similarity=0.177 Sum_probs=14.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 038622 443 YNPVIQALFRRKRTTEAMRLFREMM 467 (587)
Q Consensus 443 ~~~l~~~~~~~g~~~~A~~~~~~~~ 467 (587)
+..|+..|...|++++|+++|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666666666666666666644
No 295
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.62 E-value=1.3 Score=38.38 Aligned_cols=26 Identities=23% Similarity=0.230 Sum_probs=21.2
Q ss_pred HHHHHHHHccCCHhHHHHHHHHHHhc
Q 038622 515 YMLAEGLVSLGKEETLVELIDMVMDK 540 (587)
Q Consensus 515 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 540 (587)
..++.++++.|+|.+|+...+.++..
T Consensus 129 ~Kli~l~y~~~~YsdalalIn~ll~E 154 (421)
T COG5159 129 CKLIYLLYKTGKYSDALALINPLLHE 154 (421)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 35788899999999999988876643
No 296
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.54 E-value=0.041 Score=30.48 Aligned_cols=23 Identities=13% Similarity=0.390 Sum_probs=10.2
Q ss_pred CCCHHHHHHHHHHHHhcCChhHH
Q 038622 52 APDERTFTTLMQGLIEEGNLDGA 74 (587)
Q Consensus 52 ~~~~~~~~~l~~~~~~~g~~~~A 74 (587)
|.|+.+|..++..+...|++++|
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhh
Confidence 33444444444444444444444
No 297
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.51 E-value=0.72 Score=35.29 Aligned_cols=44 Identities=14% Similarity=0.133 Sum_probs=19.9
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCChHhHHHHH
Q 038622 404 DIVTYGTLIGGLCKAGRVEVASKLLRSIQMK-GIVLTPQAYNPVI 447 (587)
Q Consensus 404 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~ 447 (587)
+..++.+++.+|...|++..|.++++.+.+. +++.+...|..|+
T Consensus 51 t~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll 95 (126)
T PF12921_consen 51 TSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLL 95 (126)
T ss_pred CHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3344444444444445555555555444443 3333334444443
No 298
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=94.51 E-value=0.59 Score=35.39 Aligned_cols=74 Identities=14% Similarity=0.218 Sum_probs=47.5
Q ss_pred CCCHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCc
Q 038622 472 PPDALTYKHVFRGLCNGGG--PIGEAVDFVIEMLERGFLP--EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDR 546 (587)
Q Consensus 472 ~~~~~~~~~l~~~~~~~~~--~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 546 (587)
.++..+...+.+++....+ +..+.+.+++..++.. +| +-+..+.|+-.+++.++|+.++++++.+++..|++..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 4455555556666654443 2556677777777522 34 3556666777777888888888888888887777643
No 299
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.37 E-value=0.7 Score=40.73 Aligned_cols=80 Identities=19% Similarity=0.241 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCChhhHH
Q 038622 55 ERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVS-----EGFNPDQFTYN 129 (587)
Q Consensus 55 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 129 (587)
..++..++..+...|+++.+...++++.... |.+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 3466777778888888888888888888875 67788888888888888888888888887765 47777777776
Q ss_pred HHHHHH
Q 038622 130 TLVNGL 135 (587)
Q Consensus 130 ~l~~~~ 135 (587)
......
T Consensus 232 ~y~~~~ 237 (280)
T COG3629 232 LYEEIL 237 (280)
T ss_pred HHHHHh
Confidence 666663
No 300
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.29 E-value=0.1 Score=32.36 Aligned_cols=34 Identities=24% Similarity=0.317 Sum_probs=27.3
Q ss_pred HHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCc
Q 038622 513 SFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDR 546 (587)
Q Consensus 513 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 546 (587)
.++.++-.+++.|++++|++..+.+++..|.+..
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 4567888889999999999999999999998744
No 301
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.23 E-value=2.2 Score=33.65 Aligned_cols=40 Identities=10% Similarity=0.078 Sum_probs=17.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 038622 62 MQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCK 102 (587)
Q Consensus 62 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 102 (587)
+..+.+.+.......+++.+...+ +.+....+.++..|++
T Consensus 14 v~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 14 VELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 333333444444444444444443 2334444444444443
No 302
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.21 E-value=1.8 Score=32.74 Aligned_cols=58 Identities=22% Similarity=0.305 Sum_probs=26.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 038622 412 IGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKA 470 (587)
Q Consensus 412 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 470 (587)
+..+..+|+-+.-.+++..+.+. -.+++.....++.+|.+.|+..++.+++.++-+.|
T Consensus 93 Ld~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 93 LDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 34444555555555555554431 23445555555555555555555555555555544
No 303
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.08 E-value=0.16 Score=28.00 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=13.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038622 442 AYNPVIQALFRRKRTTEAMRLFREMME 468 (587)
Q Consensus 442 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 468 (587)
.|..++.++...|++++|++.|+++++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344455555555555555555555554
No 304
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=93.89 E-value=6.2 Score=37.70 Aligned_cols=179 Identities=13% Similarity=0.143 Sum_probs=108.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHH
Q 038622 332 SRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTL 411 (587)
Q Consensus 332 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 411 (587)
+.+......++..+..+..+.-...+..+++.-| .+...+..++++|... ..++-..+|+++.+..+. +...-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 4456667777788888888888888888888743 4666777888888877 457778888888876554 55555566
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCC-----hHhHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHH
Q 038622 412 IGGLCKAGRVEVASKLLRSIQMKGIVLT-----PQAYNPVIQALFRRKRTTEAMRLFREMMEK-ADPPDALTYKHVFRGL 485 (587)
Q Consensus 412 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~ 485 (587)
+..|.+ ++...+..+|.++...-++.. .+.|..+... -..+.+.-..+..+.... |...-...+..+..-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 666555 788888888887776522211 1233333321 134556666666655543 3223333444444445
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038622 486 CNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAE 519 (587)
Q Consensus 486 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 519 (587)
....+ +++|++++.-.++.+ ..|.-+...+..
T Consensus 216 s~~eN-~~eai~Ilk~il~~d-~k~~~ar~~~i~ 247 (711)
T COG1747 216 SENEN-WTEAIRILKHILEHD-EKDVWARKEIIE 247 (711)
T ss_pred ccccC-HHHHHHHHHHHhhhc-chhhhHHHHHHH
Confidence 55555 777877777777643 334444444443
No 305
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.79 E-value=0.85 Score=40.21 Aligned_cols=80 Identities=14% Similarity=0.157 Sum_probs=68.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCcccH
Q 038622 89 TNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQ-----EGFDPDVFTY 163 (587)
Q Consensus 89 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 163 (587)
-..++..++..+...|+.+.+...++++.... |-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~ 230 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR 230 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence 34567788899999999999999999999885 77888999999999999999999999998876 4788887777
Q ss_pred HHHHHH
Q 038622 164 NSLISG 169 (587)
Q Consensus 164 ~~l~~~ 169 (587)
......
T Consensus 231 ~~y~~~ 236 (280)
T COG3629 231 ALYEEI 236 (280)
T ss_pred HHHHHH
Confidence 666665
No 306
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=93.72 E-value=4.5 Score=37.36 Aligned_cols=81 Identities=12% Similarity=0.009 Sum_probs=53.6
Q ss_pred hhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh---cCChHHHHHH
Q 038622 71 LDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCK---VGHVKQALEV 147 (587)
Q Consensus 71 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~ 147 (587)
.+.-+.+++++++.+ |.+...+..++..+.+..+.++..+-+++++... +.+...|...+..... .-.+.....+
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 345567777777775 5677777777777777777788788888887763 3456667766665443 2345666666
Q ss_pred HHHHHh
Q 038622 148 MDMMLQ 153 (587)
Q Consensus 148 ~~~~~~ 153 (587)
|.+.++
T Consensus 125 y~~~l~ 130 (321)
T PF08424_consen 125 YEKCLR 130 (321)
T ss_pred HHHHHH
Confidence 666554
No 307
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.60 E-value=3 Score=33.14 Aligned_cols=112 Identities=19% Similarity=0.068 Sum_probs=58.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCh-HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCC
Q 038622 413 GGLCKAGRVEVASKLLRSIQMKGIVLTP-QAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGP 491 (587)
Q Consensus 413 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 491 (587)
..-...++.+.+..++..+.-. .|.. ..-..-+..+...|+|.+|+++|+.+.+. .|....-..++..|....+
T Consensus 18 ~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--~~~~p~~kALlA~CL~~~~- 92 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER--APGFPYAKALLALCLYALG- 92 (160)
T ss_pred HHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHHcC-
Confidence 3344567788888888777764 3333 33344556677788888888888887664 3333333333333333333
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHH
Q 038622 492 IGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVE 532 (587)
Q Consensus 492 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 532 (587)
-..=..+..++++. .+|+.+.. +...+....+...|..
T Consensus 93 D~~Wr~~A~evle~--~~d~~a~~-Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 93 DPSWRRYADEVLES--GADPDARA-LVRALLARADLEPAHE 130 (160)
T ss_pred ChHHHHHHHHHHhc--CCChHHHH-HHHHHHHhccccchhh
Confidence 13333344445553 24554444 3333333333333333
No 308
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.58 E-value=6.9 Score=37.18 Aligned_cols=109 Identities=16% Similarity=0.003 Sum_probs=59.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc---CCCCC-----hHhHHHHHHHHHhcCCHHHHHHHHHHHHh-------cCCCCC--
Q 038622 412 IGGLCKAGRVEVASKLLRSIQMK---GIVLT-----PQAYNPVIQALFRRKRTTEAMRLFREMME-------KADPPD-- 474 (587)
Q Consensus 412 ~~~~~~~~~~~~a~~~~~~~~~~---~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~-- 474 (587)
...+...|++.+|.+.+...--. |...+ -..|+.++....+.|.+..+..+|.++++ .|+.|.
T Consensus 247 sq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~ 326 (696)
T KOG2471|consen 247 SQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKT 326 (696)
T ss_pred HHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcc
Confidence 34455566777776666443211 21112 12346666666666776666666666663 232221
Q ss_pred --------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038622 475 --------ALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLV 522 (587)
Q Consensus 475 --------~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 522 (587)
-.....++-.+...|+ .-.|.+.|.++..- +..+|..|..|+.+|.
T Consensus 327 ~tls~nks~eilYNcG~~~Lh~gr-Pl~AfqCf~~av~v-fh~nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 327 FTLSQNKSMEILYNCGLLYLHSGR-PLLAFQCFQKAVHV-FHRNPRLWLRLAECCI 380 (696)
T ss_pred eehhcccchhhHHhhhHHHHhcCC-cHHHHHHHHHHHHH-HhcCcHHHHHHHHHHH
Confidence 1222334445566666 66777777766652 3456777777777665
No 309
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.57 E-value=0.23 Score=27.40 Aligned_cols=28 Identities=25% Similarity=0.370 Sum_probs=16.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038622 442 AYNPVIQALFRRKRTTEAMRLFREMMEK 469 (587)
Q Consensus 442 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (587)
.|..++.++...|++++|+..|+++++.
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 4555566666666666666666666553
No 310
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.22 E-value=0.052 Score=47.98 Aligned_cols=121 Identities=18% Similarity=0.084 Sum_probs=63.1
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHH
Q 038622 416 CKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEA 495 (587)
Q Consensus 416 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A 495 (587)
...|.++.|++.+...+..++ +....+..-..++.+.+++..|++-+..++..+ +.....|..-..+....|+ |++|
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp-~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein-~Dsa~~ykfrg~A~rllg~-~e~a 201 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNP-PLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN-PDSAKGYKFRGYAERLLGN-WEEA 201 (377)
T ss_pred hcCcchhhhhcccccccccCC-chhhhcccccceeeeccCCchhhhhhhhhhccC-cccccccchhhHHHHHhhc-hHHH
Confidence 345666666666666665432 234455555566666666666666666666542 2223334444444455566 6666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcC
Q 038622 496 VDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKA 541 (587)
Q Consensus 496 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 541 (587)
...++.+.+.++.+....+ +-.+.-..+..++-...+++..+..
T Consensus 202 a~dl~~a~kld~dE~~~a~--lKeV~p~a~ki~e~~~k~er~~~e~ 245 (377)
T KOG1308|consen 202 AHDLALACKLDYDEANSAT--LKEVFPNAGKIEEHRRKYERAREER 245 (377)
T ss_pred HHHHHHHHhccccHHHHHH--HHHhccchhhhhhchhHHHHHHHHh
Confidence 6666666665444433322 3333444444455555555444433
No 311
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=93.17 E-value=8.3 Score=36.93 Aligned_cols=181 Identities=15% Similarity=0.139 Sum_probs=126.7
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHH
Q 038622 297 ARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSL 376 (587)
Q Consensus 297 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 376 (587)
+.+...+..++..+...-...-...+..++...| .+...+..++++|..+ ..++-..+|+++++.... |...-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 5566777888888888888888889999998864 5777888999999988 557788999999886432 44444445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCC--C---cchHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCChHhHHHHHHHH
Q 038622 377 LTYYCRAGDIKRAADIVQNMTSNGCEP--D---IVTYGTLIGGLCKAGRVEVASKLLRSIQMK-GIVLTPQAYNPVIQAL 450 (587)
Q Consensus 377 ~~~~~~~~~~~~A~~~~~~~~~~~~~~--~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~ 450 (587)
+..| ..++...+..+|.++...-++. + .+.|..+... -..+.+....+..++... |...-...+..+..-|
T Consensus 139 a~~y-Ekik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKY-EKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHH-HHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 5444 4488899999999888752221 1 1233333321 245788888888888765 3333345566666778
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038622 451 FRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGL 485 (587)
Q Consensus 451 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 485 (587)
....++.+|++++..+++.+ ..|...-..++..+
T Consensus 216 s~~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l 249 (711)
T COG1747 216 SENENWTEAIRILKHILEHD-EKDVWARKEIIENL 249 (711)
T ss_pred ccccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence 88899999999999999875 55555555555444
No 312
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.88 E-value=12 Score=38.20 Aligned_cols=175 Identities=17% Similarity=0.164 Sum_probs=83.0
Q ss_pred HHHHHHHHcCChhhHHHHHHhhccCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 038622 25 ILIKALCKAHQIRPAILMMEEMPGYGLAPD--ERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCK 102 (587)
Q Consensus 25 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 102 (587)
.-+..+.+..-++-|+.+-+.- +..++ .......+.-+.+.|++++|...|-+.+..- .++ .++.-|..
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~---~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-e~s-----~Vi~kfLd 409 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQ---HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL-EPS-----EVIKKFLD 409 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC-ChH-----HHHHHhcC
Confidence 3445555555666665544332 11222 1233334444556677777776666655431 111 23333444
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHH
Q 038622 103 EGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEI 182 (587)
Q Consensus 103 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 182 (587)
..+...-..+++.+.+.|+. +...-..|+.+|.+.++.++-.+..+... .|.. ..-....+..+.+.+-.++|..+
T Consensus 410 aq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELL 485 (933)
T ss_pred HHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHH
Confidence 44455555566666665533 33344556667777777666665554433 1110 11123344445555555555544
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHH
Q 038622 183 LNQMILRDCSPNTITYNTLISTLCKENQVEEATELARV 220 (587)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 220 (587)
-.+... +..... ..+-..+++++|++.+..
T Consensus 486 A~k~~~-----he~vl~---ille~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 486 ATKFKK-----HEWVLD---ILLEDLHNYEEALRYISS 515 (933)
T ss_pred HHHhcc-----CHHHHH---HHHHHhcCHHHHHHHHhc
Confidence 433221 222222 223345666666666554
No 313
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=92.79 E-value=0.18 Score=27.04 Aligned_cols=31 Identities=16% Similarity=0.343 Sum_probs=22.3
Q ss_pred HHHHHHHHHHccCCHhHHHHHHHHHHhcCCC
Q 038622 513 SFYMLAEGLVSLGKEETLVELIDMVMDKAKF 543 (587)
Q Consensus 513 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 543 (587)
.+..++.++...|++++|...++++++..|.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4566777777777778887777777766553
No 314
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=92.74 E-value=4.4 Score=32.69 Aligned_cols=101 Identities=13% Similarity=0.235 Sum_probs=50.0
Q ss_pred HHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 038622 6 TAHADMVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHG 85 (587)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 85 (587)
.+...+.+.+++|+...+..+++.+.+.|++.....+++.-. -+|.......+-.+ .+.+..+.++--.|..+-
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~V----i~DSk~lA~~LLs~--~~~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHV----IPDSKPLACQLLSL--GNQYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcc----cCCcHHHHHHHHHh--HccChHHHHHHHHHHHHh
Confidence 455555666777777777777777777776655544443322 33333333222111 123333444433333320
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 038622 86 CLVTNVTVNVLVHGFCKEGRIEDALSFIQEM 116 (587)
Q Consensus 86 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 116 (587)
...+..++..+...|++-+|+.+.+..
T Consensus 89 ----~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 89 ----GTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred ----hhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 112334555566666666666665553
No 315
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=92.67 E-value=0.079 Score=28.98 Aligned_cols=31 Identities=13% Similarity=0.318 Sum_probs=27.1
Q ss_pred chhhhhhhHHHHHHHHHHHHhcchhhhccCc
Q 038622 546 RETSMVRGFLKIRKFQDALATFGDILDSRMP 576 (587)
Q Consensus 546 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 576 (587)
+...++.++.+.|++++|+..|+++++..|.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 3567888999999999999999999998764
No 316
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.64 E-value=1.9 Score=35.61 Aligned_cols=96 Identities=15% Similarity=0.044 Sum_probs=51.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh--HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCHHHH--HHH
Q 038622 407 TYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTP--QAYNPVIQALFRRKRTTEAMRLFREMMEKADP-PDALTY--KHV 481 (587)
Q Consensus 407 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~--~~l 481 (587)
.+..++..|.+.|+.+.|.+.+.++.+....+.. .++..+++.....+++..+...+.++...-.. .|...- ..+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 4556666666677777777777666654322222 44556666666667777766666666553111 111111 111
Q ss_pred --HHHHHhCCCCHHHHHHHHHHHH
Q 038622 482 --FRGLCNGGGPIGEAVDFVIEML 503 (587)
Q Consensus 482 --~~~~~~~~~~~~~A~~~~~~~~ 503 (587)
+-.+...++ +.+|-+.|-...
T Consensus 118 ~~gL~~l~~r~-f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGLANLAQRD-FKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHhch-HHHHHHHHHccC
Confidence 112234455 777777666654
No 317
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=92.47 E-value=17 Score=38.88 Aligned_cols=19 Identities=32% Similarity=0.333 Sum_probs=10.0
Q ss_pred HHHHhccCCHHHHHHHHHH
Q 038622 202 ISTLCKENQVEEATELARV 220 (587)
Q Consensus 202 ~~~~~~~~~~~~a~~~~~~ 220 (587)
++-++..+++.+|..+.++
T Consensus 684 vr~~l~~~~y~~AF~~~Rk 702 (1265)
T KOG1920|consen 684 VRTLLDRLRYKEAFEVMRK 702 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555556666555443
No 318
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=92.41 E-value=0.53 Score=45.17 Aligned_cols=101 Identities=13% Similarity=0.056 Sum_probs=75.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc
Q 038622 444 NPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVS 523 (587)
Q Consensus 444 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 523 (587)
+..+-.....|+...|..++..+..............++..+...|- ...|-.++.+.+... ...+-+++.+++++..
T Consensus 611 n~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~-~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~ 688 (886)
T KOG4507|consen 611 NEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGL-HLDATKLLLQALAIN-SSEPLTFLSLGNAYLA 688 (886)
T ss_pred ecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhh-hccHHHHHHHHHhhc-ccCchHHHhcchhHHH
Confidence 33333344578999999999888765322233445667777777777 888989998888753 4467778889999999
Q ss_pred cCCHhHHHHHHHHHHhcCCCCCc
Q 038622 524 LGKEETLVELIDMVMDKAKFSDR 546 (587)
Q Consensus 524 ~g~~~~A~~~~~~~~~~~~~~~~ 546 (587)
..+.+.|++.++.+++..|+...
T Consensus 689 l~~i~~a~~~~~~a~~~~~~~~~ 711 (886)
T KOG4507|consen 689 LKNISGALEAFRQALKLTTKCPE 711 (886)
T ss_pred HhhhHHHHHHHHHHHhcCCCChh
Confidence 99999999999999999988743
No 319
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=92.41 E-value=2.8 Score=35.79 Aligned_cols=94 Identities=19% Similarity=0.190 Sum_probs=61.9
Q ss_pred HhcCCHHHHHHHHHHHHhc----CCCCC--HHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHcCCCC-----CHH
Q 038622 451 FRRKRTTEAMRLFREMMEK----ADPPD--ALTYKHVFRGLCNGGGPIG-------EAVDFVIEMLERGFLP-----EFS 512 (587)
Q Consensus 451 ~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~-------~A~~~~~~~~~~~~~p-----~~~ 512 (587)
.....+++|++.|.-++-. +.++. ...+..+++.|...|+ .+ .|.+.|+++.+..-.| +..
T Consensus 88 ~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~-~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~ 166 (214)
T PF09986_consen 88 SGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGD-EENEKRFLRKALEFYEEAYENEDFPIEGMDEAT 166 (214)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCC-HHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHH
Confidence 3445677777766655532 22333 3345566777766666 33 4566666666543232 245
Q ss_pred HHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCC
Q 038622 513 SFYMLAEGLVSLGKEETLVELIDMVMDKAKFSD 545 (587)
Q Consensus 513 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 545 (587)
+.+.+|.+..+.|++++|.+++.+++.....+.
T Consensus 167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 167 LLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 667899999999999999999999998877654
No 320
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=92.39 E-value=1.5 Score=41.07 Aligned_cols=122 Identities=12% Similarity=-0.023 Sum_probs=74.0
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 038622 312 KLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAAD 391 (587)
Q Consensus 312 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 391 (587)
..|++..|.+-+...+... +.++.........+...|+++.+...+..+... +.....+...++......|+++.|..
T Consensus 301 ~~gd~~aas~~~~~~lr~~-~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQ-QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred hccCHHHHHHHHHHHHHhC-CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHH
Confidence 4566666655554444332 334444444445566678888877777665543 33345566677777777788888888
Q ss_pred HHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 038622 392 IVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGI 436 (587)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 436 (587)
.-..|....+. ++++....+..-...|-++++...|+++...++
T Consensus 379 ~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 379 TAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred HHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCC
Confidence 77777765554 444444333444456777788877777776543
No 321
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=92.38 E-value=8.9 Score=35.46 Aligned_cols=108 Identities=8% Similarity=-0.005 Sum_probs=80.0
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHHcCC------------hhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 038622 8 HADMVSRGIKPDVSTFNILIKALCKAHQ------------IRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGAL 75 (587)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 75 (587)
+...++.+ |-|..+|-.+++.--..-. .+.-+.+++++++.+ +.+...+..++..+.+..+.+...
T Consensus 8 l~~~v~~~-P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 8 LNRRVREN-PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHhC-cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHH
Confidence 44555555 7789999998866444322 345577889988885 788889999999999999999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHh---cCCHHHHHHHHHHHHH
Q 038622 76 RIREQMVEHGCLVTNVTVNVLVHGFCK---EGRIEDALSFIQEMVS 118 (587)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~ 118 (587)
+.++.++... +.+...|...+..... .-.++....+|.+.++
T Consensus 86 ~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~ 130 (321)
T PF08424_consen 86 KKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLR 130 (321)
T ss_pred HHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH
Confidence 9999999885 5577888877775544 2346677777766654
No 322
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=92.35 E-value=15 Score=37.77 Aligned_cols=49 Identities=22% Similarity=0.147 Sum_probs=28.8
Q ss_pred HhcCCHHHHHHHHHHHHHcCC-CCC-------HhhHHHHHHHHHhcCCHHHHHHHHH
Q 038622 346 CKSRRVEDAAQLMDQMIMEGL-KPD-------KFTYNSLLTYYCRAGDIKRAADIVQ 394 (587)
Q Consensus 346 ~~~~~~~~A~~~~~~~~~~~~-~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~ 394 (587)
.-.+++..|....+.+..... .|+ +..+...+-.+...|+.+.|...|.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 345778778887777765311 111 2223333344556688888888887
No 323
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=92.30 E-value=4.6 Score=31.79 Aligned_cols=38 Identities=5% Similarity=0.002 Sum_probs=15.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHH
Q 038622 378 TYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLC 416 (587)
Q Consensus 378 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 416 (587)
..+...+.+.....+++.+...+. .+....+.++..|+
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~ 52 (140)
T smart00299 15 ELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYA 52 (140)
T ss_pred HHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHH
Confidence 333333444444444444444332 23334444444444
No 324
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.24 E-value=1.9 Score=35.68 Aligned_cols=75 Identities=15% Similarity=0.035 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHccCCHhHHH
Q 038622 455 RTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERG---FLPEFSSFYMLAEGLVSLGKEETLV 531 (587)
Q Consensus 455 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~ 531 (587)
.-++|.+.|-++-..+.-.++.....++ .++...+ .++++.++.++++.. -.++++++..|+.++.+.|+++.|-
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLA-tyY~krD-~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALA-TYYTKRD-PEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHH-HHHHccC-HHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3455666666666554333444333333 3444444 677777777777531 1236777777777777777777764
No 325
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.19 E-value=0.37 Score=28.06 Aligned_cols=30 Identities=23% Similarity=0.354 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHccCCHhHHHHHHHHHHhcC
Q 038622 512 SSFYMLAEGLVSLGKEETLVELIDMVMDKA 541 (587)
Q Consensus 512 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 541 (587)
.++..|+.+|...|++++|..+++++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 456788889999999999999998887643
No 326
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=92.11 E-value=9.2 Score=34.86 Aligned_cols=150 Identities=15% Similarity=0.081 Sum_probs=91.6
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh----c
Q 038622 312 KLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCK----SRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCR----A 383 (587)
Q Consensus 312 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 383 (587)
..+++..+...+......+ +......+...|.. ..+...|..+|..+...| .......+...+.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~---~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELG---DAAALALLGQMYGAGKGVSRDKTKAADWYRCAAADG---LAEALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcC---ChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCcc
Confidence 4567777887777776543 22344444444443 345777888888766654 23334445555554 3
Q ss_pred CCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcC-------ChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh----
Q 038622 384 GDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAG-------RVEVASKLLRSIQMKGIVLTPQAYNPVIQALFR---- 452 (587)
Q Consensus 384 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 452 (587)
.|..+|..+++++.+.|..+.......+...|..-. +...|...+.++...+ +......++..|..
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv 203 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGV 203 (292)
T ss_pred cCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCC
Confidence 477888888888887765432223455555554431 2336777777777654 55566666666544
Q ss_pred cCCHHHHHHHHHHHHhcC
Q 038622 453 RKRTTEAMRLFREMMEKA 470 (587)
Q Consensus 453 ~g~~~~A~~~~~~~~~~~ 470 (587)
..++++|...|.++.+.|
T Consensus 204 ~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 204 PRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred CcCHHHHHHHHHHHHHCC
Confidence 347788888888888876
No 327
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.98 E-value=0.21 Score=25.57 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=17.6
Q ss_pred HHHHHHHHHHccCCHhHHHHHHH
Q 038622 513 SFYMLAEGLVSLGKEETLVELID 535 (587)
Q Consensus 513 ~~~~l~~~~~~~g~~~~A~~~~~ 535 (587)
+...++.++...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45667888888888888887765
No 328
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=91.78 E-value=13 Score=35.71 Aligned_cols=428 Identities=9% Similarity=0.043 Sum_probs=195.1
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh-cCCHHHHHHHHHH
Q 038622 107 EDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCK-LGEVEEAVEILNQ 185 (587)
Q Consensus 107 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~ 185 (587)
.....+++.+... .+.|+..|...+..+.+.+.+.+...+|.+|+... +.++..|...+..... ..+.+.|..+|..
T Consensus 88 ~rIv~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflr 165 (568)
T KOG2396|consen 88 NRIVFLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLR 165 (568)
T ss_pred HHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHH
Confidence 3445556666554 35588888888888777777888888888888863 2245555444443333 3348888888888
Q ss_pred HHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHh---------hHHHHH---------------HHHH
Q 038622 186 MILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVC---------TFNSLI---------------QGLC 241 (587)
Q Consensus 186 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~l~---------------~~~~ 241 (587)
.+..+ +.++..|....+.-.. .+..+..+-...|...+.. .+.... ....
T Consensus 166 gLR~n-pdsp~Lw~eyfrmEL~-----~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~ 239 (568)
T KOG2396|consen 166 GLRFN-PDSPKLWKEYFRMELM-----YAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAE 239 (568)
T ss_pred HhhcC-CCChHHHHHHHHHHHH-----HHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHH
Confidence 88775 4455555444332211 0111110000000000000 000000 0000
Q ss_pred hcCChHHH-HHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 038622 242 LTSNFDVA-MELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAE 320 (587)
Q Consensus 242 ~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 320 (587)
......+- ..+.+.+. .+.+.++.++..+.. +.++-.......+.. ..........+-+...
T Consensus 240 ~~d~~kel~k~i~d~~~-~~~~~np~~~~~laq------------r~l~i~~~tdl~~~~----~~~~~~~~~~k~s~~~ 302 (568)
T KOG2396|consen 240 KFDFLKELQKNIIDDLQ-SKAPDNPLLWDDLAQ------------RELEILSQTDLQHTD----NQAKAVEVGSKESRCC 302 (568)
T ss_pred HHHHHHHHHHHHHHHHh-ccCCCCCccHHHHHH------------HHHHHHHHhhccchh----hhhhchhcchhHHHHH
Confidence 00000000 01111111 122334444443332 111111111000100 0001111111222333
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHHc-CCCCC-HhhHHHHHHHHHhcCCHHH-HHH
Q 038622 321 EIFDEMEIQGISRNSVTYNTLIDGLCKS------RRVEDAAQLMDQMIME-GLKPD-KFTYNSLLTYYCRAGDIKR-AAD 391 (587)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~A~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~~~-A~~ 391 (587)
.+|+..... -++...|...+..|... .....-..+++..... +..++ ...|..+...+........ |..
T Consensus 303 ~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~ 380 (568)
T KOG2396|consen 303 AVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVK 380 (568)
T ss_pred HHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHH
Confidence 556555442 24445555555544322 2344455566665543 22222 3345555555554443332 333
Q ss_pred HHHHHHHCCCCCCcchHHHHHHHHHhc-CChHHHH-HHHHHHHHcCCCCChHhHHHHHHHHHhcCC-HHHHH--HHHHHH
Q 038622 392 IVQNMTSNGCEPDIVTYGTLIGGLCKA-GRVEVAS-KLLRSIQMKGIVLTPQAYNPVIQALFRRKR-TTEAM--RLFREM 466 (587)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~--~~~~~~ 466 (587)
+..+. +..+...|..-+...... .+++--. +.+..+...-..+....|.... .|+ .+... .++..+
T Consensus 381 l~~e~----f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~ 451 (568)
T KOG2396|consen 381 LTTEL----FRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISAL 451 (568)
T ss_pred hhHHH----hcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHH
Confidence 33232 334555555544444422 2222221 1222232211111112222222 333 22221 233333
Q ss_pred HhcCCCCCHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHc--cCCHhHHHHHHHHHHhcCC
Q 038622 467 MEKADPPDALTY-KHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVS--LGKEETLVELIDMVMDKAK 542 (587)
Q Consensus 467 ~~~~~~~~~~~~-~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~ 542 (587)
...+ .|+..++ ..++..+.+.|. +.+|...+.++.. ++| +...+..++..-.. .-+...++.+|+.++..-.
T Consensus 452 ~s~~-~~~~~tl~s~~l~~~~e~~~-~~~ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg 527 (568)
T KOG2396|consen 452 LSVI-GADSVTLKSKYLDWAYESGG-YKKARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG 527 (568)
T ss_pred HHhc-CCceeehhHHHHHHHHHhcc-hHHHHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC
Confidence 3333 4554444 456667788888 9999999999998 445 77777777654322 2237889999999876555
Q ss_pred -CCCchhhhhhhHHHHHHHHHHHHhcchhhhcc
Q 038622 543 -FSDRETSMVRGFLKIRKFQDALATFGDILDSR 574 (587)
Q Consensus 543 -~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 574 (587)
+++.|......-...|.-+.+-..+.++....
T Consensus 528 ~d~~lw~~y~~~e~~~g~~en~~~~~~ra~ktl 560 (568)
T KOG2396|consen 528 ADSDLWMDYMKEELPLGRPENCGQIYWRAMKTL 560 (568)
T ss_pred CChHHHHHHHHhhccCCCcccccHHHHHHHHhh
Confidence 33556655555455666655555555555433
No 329
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.72 E-value=17 Score=37.24 Aligned_cols=176 Identities=16% Similarity=0.185 Sum_probs=83.9
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 038622 95 VLVHGFCKEGRIEDALSFIQEMVSEGFNPD--QFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCK 172 (587)
Q Consensus 95 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 172 (587)
.-+..+.+...++-|+.+-+. .+.+++ .......+..+.+.|++++|...|-+.+.. +.| ..++.-|..
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLd 409 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLD 409 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcC
Confidence 344455555556666554332 222222 123444455555667777776666555432 111 123444444
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHH
Q 038622 173 LGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMEL 252 (587)
Q Consensus 173 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 252 (587)
......-..+++.+.+.|+. +......|+.+|.+.++.++-.+..+... .|.. ..-....+..+.+.+-.++|..+
T Consensus 410 aq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELL 485 (933)
T ss_pred HHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHH
Confidence 44555555666666666644 44555566677777777666555443322 1111 01123344444444555555444
Q ss_pred HHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHH
Q 038622 253 FQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEM 291 (587)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 291 (587)
-.+... +...... .+-..+++++|++++..+
T Consensus 486 A~k~~~-----he~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 486 ATKFKK-----HEWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHhcc-----CHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 333221 1222222 223445666666666544
No 330
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.71 E-value=21 Score=38.27 Aligned_cols=24 Identities=8% Similarity=0.288 Sum_probs=10.8
Q ss_pred HHHHHHHHhcC--ChhHHHHHHHHHH
Q 038622 59 TTLMQGLIEEG--NLDGALRIREQMV 82 (587)
Q Consensus 59 ~~l~~~~~~~g--~~~~A~~~~~~~~ 82 (587)
..++.++.+.+ ..+.|+.......
T Consensus 794 ~~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 794 LFILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 34445555544 4444444444333
No 331
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=91.70 E-value=32 Score=40.21 Aligned_cols=63 Identities=14% Similarity=0.076 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcC
Q 038622 475 ALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKA 541 (587)
Q Consensus 475 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 541 (587)
..+|...++.....|. ++.|...+-++.+.+ -+.++.-.+..+++.|+...|+.+++..++..
T Consensus 1670 ge~wLqsAriaR~aG~-~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGH-LQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHHHHhccc-HHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 4566667776666777 777777777776632 34556667777777888888888887777443
No 332
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=91.35 E-value=19 Score=36.93 Aligned_cols=99 Identities=13% Similarity=0.104 Sum_probs=63.1
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCCChhhH
Q 038622 52 APDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGF---CKEGRIEDALSFIQEMVSEGFNPDQFTY 128 (587)
Q Consensus 52 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 128 (587)
.-+...+..++..+...|++++....-..|... .|.++..|...+.-. ...++...+...|++.+.. .-++..|
T Consensus 110 ~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~-~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~d--y~~v~iw 186 (881)
T KOG0128|consen 110 SYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEI-APLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGD--YNSVPIW 186 (881)
T ss_pred ccchHHHHHHHHHHHHhcchHHHHHHHHHHHHh-cCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcc--cccchHH
Confidence 345556677777788888888877777777665 366777776665532 2346677777888877765 3344455
Q ss_pred HHHHHHHHh-------cCChHHHHHHHHHHHh
Q 038622 129 NTLVNGLCK-------VGHVKQALEVMDMMLQ 153 (587)
Q Consensus 129 ~~l~~~~~~-------~~~~~~a~~~~~~~~~ 153 (587)
...+..... .++++..+.+|.+++.
T Consensus 187 ~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~ 218 (881)
T KOG0128|consen 187 EEVVNYLVGFGNVAKKSEDYKKERSVFERALR 218 (881)
T ss_pred HHHHHHHHhccccccccccchhhhHHHHHHHh
Confidence 555544433 3556677777777665
No 333
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=91.20 E-value=0.49 Score=28.00 Aligned_cols=28 Identities=25% Similarity=0.429 Sum_probs=23.9
Q ss_pred HHHHHHHHccCCHhHHHHHHHHHHhcCC
Q 038622 515 YMLAEGLVSLGKEETLVELIDMVMDKAK 542 (587)
Q Consensus 515 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 542 (587)
..|+.+|..+|+.+.|+.+++.++..+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 4689999999999999999999996443
No 334
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=91.14 E-value=1.2 Score=37.61 Aligned_cols=80 Identities=14% Similarity=0.054 Sum_probs=35.5
Q ss_pred cCChHHHHHHHHHHHHcCCCCCh-HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhCCCCHHHH
Q 038622 418 AGRVEVASKLLRSIQMKGIVLTP-QAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDAL-TYKHVFRGLCNGGGPIGEA 495 (587)
Q Consensus 418 ~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~A 495 (587)
..+++.|+..|.+.+.. .|+. .-|..-+.++.+..+++.+..--.++++. .|+.. ....++.......+ +++|
T Consensus 23 ~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~-~~ea 97 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKG-YDEA 97 (284)
T ss_pred hhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhcc-ccHH
Confidence 33455555555555442 2333 23334444455555555555555555543 23322 22223333333333 5555
Q ss_pred HHHHHHH
Q 038622 496 VDFVIEM 502 (587)
Q Consensus 496 ~~~~~~~ 502 (587)
+..+.++
T Consensus 98 I~~Lqra 104 (284)
T KOG4642|consen 98 IKVLQRA 104 (284)
T ss_pred HHHHHHH
Confidence 5555555
No 335
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.11 E-value=9.6 Score=33.08 Aligned_cols=60 Identities=10% Similarity=0.017 Sum_probs=31.1
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHhCCCCC-----------CHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038622 199 NTLISTLCKENQVEEATELARVLTSKGILP-----------DVCTFNSLIQGLCLTSNFDVAMELFQEMKT 258 (587)
Q Consensus 199 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 258 (587)
..|+..|...+.+.+...+++++...-... -...|..-+..|..+.+-..-..+|++.+.
T Consensus 149 tKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalh 219 (440)
T KOG1464|consen 149 TKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALH 219 (440)
T ss_pred chHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHH
Confidence 456666666666666666666665421000 112333444455555555555566665543
No 336
>PRK10941 hypothetical protein; Provisional
Probab=91.10 E-value=2 Score=38.11 Aligned_cols=64 Identities=11% Similarity=0.025 Sum_probs=50.7
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCc
Q 038622 480 HVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDR 546 (587)
Q Consensus 480 ~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 546 (587)
.+-.++.+.++ ++.|.+..+.++. +.| ++.-+.-.|-+|.+.|.+..|..-++..++..|+.+.
T Consensus 186 nLK~~~~~~~~-~~~AL~~~e~ll~--l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~ 250 (269)
T PRK10941 186 TLKAALMEEKQ-MELALRASEALLQ--FDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI 250 (269)
T ss_pred HHHHHHHHcCc-HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh
Confidence 45556677777 8888888888887 456 6777777888888888888888888888888887654
No 337
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=91.00 E-value=0.32 Score=40.85 Aligned_cols=89 Identities=12% Similarity=0.094 Sum_probs=70.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcc
Q 038622 447 IQALFRRKRTTEAMRLFREMMEKADPPDA-LTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSL 524 (587)
Q Consensus 447 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 524 (587)
+..|....++..|+..|.+++.. .|.. ..|..-+-.+.+..+ ++.+..--.++++ +.| .....+.++..+...
T Consensus 17 gnk~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~-~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s 91 (284)
T KOG4642|consen 17 GNKCFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKH-WEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQS 91 (284)
T ss_pred cccccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhh-hhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhh
Confidence 45566677899999999999985 4554 555566666777777 9999999999998 567 466778899999999
Q ss_pred CCHhHHHHHHHHHHhc
Q 038622 525 GKEETLVELIDMVMDK 540 (587)
Q Consensus 525 g~~~~A~~~~~~~~~~ 540 (587)
..+++|+..+.++...
T Consensus 92 ~~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 92 KGYDEAIKVLQRAYSL 107 (284)
T ss_pred ccccHHHHHHHHHHHH
Confidence 9999999999998543
No 338
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=90.78 E-value=22 Score=36.60 Aligned_cols=190 Identities=14% Similarity=0.006 Sum_probs=95.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCC-CCC-------cchHHHHHHHHHhcCChHHHHHHHH--------HHHHcCCCCChHhH
Q 038622 380 YCRAGDIKRAADIVQNMTSNGC-EPD-------IVTYGTLIGGLCKAGRVEVASKLLR--------SIQMKGIVLTPQAY 443 (587)
Q Consensus 380 ~~~~~~~~~A~~~~~~~~~~~~-~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~ 443 (587)
.+-.+++..|...++.+..... .|+ +.++...+-.+-..|+.+.|...|. .....+...+..++
T Consensus 371 ~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~il 450 (608)
T PF10345_consen 371 NFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYIL 450 (608)
T ss_pred HHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHH
Confidence 3567889999999998876411 111 2223333444456799999999998 33333333222222
Q ss_pred H--HHHHHHHhcCC--HHH--HHHHHHHHHhc-CCCC--CHHHHHHH-HHHHHhCCC-CHHHHHHHHHHHHHcC--CCCC
Q 038622 444 N--PVIQALFRRKR--TTE--AMRLFREMMEK-ADPP--DALTYKHV-FRGLCNGGG-PIGEAVDFVIEMLERG--FLPE 510 (587)
Q Consensus 444 ~--~l~~~~~~~g~--~~~--A~~~~~~~~~~-~~~~--~~~~~~~l-~~~~~~~~~-~~~~A~~~~~~~~~~~--~~p~ 510 (587)
. +++..+...+. ..+ ...+++.+... .-.| +..++..+ ...+..... ...++...+...++.- ...+
T Consensus 451 a~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n 530 (608)
T PF10345_consen 451 AALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGN 530 (608)
T ss_pred HHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhcc
Confidence 1 22333333333 222 55666655442 1122 22333333 222221111 1346777776665421 1112
Q ss_pred ----HHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC---C--chhhhh-----hhHHHHHHHHHHHHhcchh
Q 038622 511 ----FSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS---D--RETSMV-----RGFLKIRKFQDALATFGDI 570 (587)
Q Consensus 511 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~--~~~~~~-----~~~~~~~~~~~A~~~~~~~ 570 (587)
.-++..++..+. .|+..+.......+....... . .|..+. ..+-..|+.++|.....+.
T Consensus 531 ~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~ 603 (608)
T PF10345_consen 531 SQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQL 603 (608)
T ss_pred chHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 122334555555 788888777777766544333 2 142222 2255667777777666554
No 339
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=90.76 E-value=0.67 Score=43.48 Aligned_cols=97 Identities=14% Similarity=0.175 Sum_probs=65.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccC
Q 038622 447 IQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLG 525 (587)
Q Consensus 447 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 525 (587)
+......+.++.|+.+|.++++.+ +.....+..-..++.+.+. +..|+.-+.++++ ..| -...|..-+.++...+
T Consensus 11 an~~l~~~~fd~avdlysKaI~ld-pnca~~~anRa~a~lK~e~-~~~Al~Da~kaie--~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIELD-PNCAIYFANRALAHLKVES-FGGALHDALKAIE--LDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhcC-Ccceeeechhhhhheeech-hhhHHHHHHhhhh--cCchhhheeeeccHHHHhHH
Confidence 344556677788888888887753 2233334344456667777 7777777777777 346 4667777777777788
Q ss_pred CHhHHHHHHHHHHhcCCCCCch
Q 038622 526 KEETLVELIDMVMDKAKFSDRE 547 (587)
Q Consensus 526 ~~~~A~~~~~~~~~~~~~~~~~ 547 (587)
++.+|...|+......|.....
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~ 108 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDA 108 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHH
Confidence 8888888888877777766443
No 340
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=90.68 E-value=0.64 Score=43.62 Aligned_cols=97 Identities=10% Similarity=-0.008 Sum_probs=75.1
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCc-hhhhhhhHHHHHH
Q 038622 482 FRGLCNGGGPIGEAVDFVIEMLERGFLPE-FSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDR-ETSMVRGFLKIRK 559 (587)
Q Consensus 482 ~~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 559 (587)
+......+. ++.|+.+|.++++ +.|+ ...+..-+.++.+.+++..|+.-+.++++.+|...- +..-+.++...+.
T Consensus 11 an~~l~~~~-fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKV-FDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred Hhhhcccch-HHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 444556677 9999999999999 5685 445566678999999999999999999999987543 4445566677888
Q ss_pred HHHHHHhcchhhhccCchhhhh
Q 038622 560 FQDALATFGDILDSRMPRKTFR 581 (587)
Q Consensus 560 ~~~A~~~~~~~~~~~~~~~~~~ 581 (587)
+.+|+..|+++....+....++
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~~ 109 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDAT 109 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHHH
Confidence 8888888888887775554443
No 341
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.52 E-value=4.5 Score=33.57 Aligned_cols=75 Identities=17% Similarity=0.050 Sum_probs=55.2
Q ss_pred ChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCChhhHHHHHHHHHhcCChHHHH
Q 038622 70 NLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSE---GFNPDQFTYNTLVNGLCKVGHVKQAL 145 (587)
Q Consensus 70 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~ 145 (587)
.-+.|++.|-++...+.-.++.....|+..|. ..+.++++.++.++++. +-.+|+..+..|+..+.+.|+++.|-
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 34567777877777664445556666665555 67889999999888764 22567788999999999999988874
No 342
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.50 E-value=13 Score=33.69 Aligned_cols=47 Identities=17% Similarity=0.312 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHh--c----CChHHHHHHHHHHHhC
Q 038622 108 DALSFIQEMVSEGFNPDQFTYNTLVNGLCK--V----GHVKQALEVMDMMLQE 154 (587)
Q Consensus 108 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----~~~~~a~~~~~~~~~~ 154 (587)
+.+.+++.+.+.|+..+..++.+....... . .....|.++|+.|.+.
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~ 132 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKK 132 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 445566666666666665444432222222 1 1244566777777665
No 343
>PRK12798 chemotaxis protein; Reviewed
Probab=90.22 E-value=16 Score=34.28 Aligned_cols=188 Identities=15% Similarity=0.037 Sum_probs=103.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH-HhcCCHHHHHHHHHHHHHCCCCCC----cchHHHHHHHHHhcCChH
Q 038622 348 SRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYY-CRAGDIKRAADIVQNMTSNGCEPD----IVTYGTLIGGLCKAGRVE 422 (587)
Q Consensus 348 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~ 422 (587)
.|+.+++.+.+..+.....++....+..|+.+- ....++..|+.+|+...-. -|. ...+..-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 588888888888877655555666666666543 4456888888888877653 232 223334445556778888
Q ss_pred HHHHHHHHHHHcC-CCCCh-HhHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhCCCCHHHHHHHH
Q 038622 423 VASKLLRSIQMKG-IVLTP-QAYNPVIQALFRRKRTTEAMRLFREMMEK-ADPPDALTYKHVFRGLCNGGGPIGEAVDFV 499 (587)
Q Consensus 423 ~a~~~~~~~~~~~-~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~ 499 (587)
++..+-......- ..|-. ..+..+.....+.++-..- ..+..++.. +.......|..+...-...|+ .+-|...-
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~-~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk-~~lA~~As 280 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRD-ARLVEILSFMDPERQRELYLRIARAALIDGK-TELARFAS 280 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccH-HHHHHHHHhcCchhHHHHHHHHHHHHHHcCc-HHHHHHHH
Confidence 8777666655541 11111 2333444444444432222 224445443 212224466677777777888 88888888
Q ss_pred HHHHHcCCCCC-HHHHHHHHH--HHHccCCHhHHHHHHHHHHh
Q 038622 500 IEMLERGFLPE-FSSFYMLAE--GLVSLGKEETLVELIDMVMD 539 (587)
Q Consensus 500 ~~~~~~~~~p~-~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~ 539 (587)
++++...-..+ ......|.. .-.-..++++|.+.+..+..
T Consensus 281 ~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~ 323 (421)
T PRK12798 281 ERALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDR 323 (421)
T ss_pred HHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCCh
Confidence 88876421111 111122222 22334556666666665443
No 344
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.11 E-value=0.89 Score=24.90 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=17.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038622 442 AYNPVIQALFRRKRTTEAMRLFREMME 468 (587)
Q Consensus 442 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 468 (587)
+|..++..+...|++++|...|+++++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455566666666666666666666665
No 345
>PRK09687 putative lyase; Provisional
Probab=89.77 E-value=15 Score=33.14 Aligned_cols=127 Identities=18% Similarity=0.145 Sum_probs=63.7
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038622 404 DIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRK-RTTEAMRLFREMMEKADPPDALTYKHVF 482 (587)
Q Consensus 404 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 482 (587)
+..+-...+.++...++ +.+...+-.+.+ .++.......+.++...+ ....+...+..++. .++..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 33444444555555544 345555555544 223334344444444332 23455555555553 33444444555
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCC
Q 038622 483 RGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSD 545 (587)
Q Consensus 483 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 545 (587)
.++.+.+. ..|+..+-+.++.+ + .....+.++...|.. +|...+.++.+..++..
T Consensus 214 ~aLg~~~~--~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~d~~ 268 (280)
T PRK09687 214 IGLALRKD--KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYKFDDNE 268 (280)
T ss_pred HHHHccCC--hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCCChh
Confidence 55555554 55666666665422 2 233455556666653 56666666666555443
No 346
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.75 E-value=8.4 Score=37.72 Aligned_cols=150 Identities=17% Similarity=0.107 Sum_probs=75.6
Q ss_pred HHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 038622 31 CKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDAL 110 (587)
Q Consensus 31 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 110 (587)
.-.|+++.|..++..+.+ ..-..++..+.++|-.++|+++ .+++.- -.....+.|+++.|.
T Consensus 597 vmrrd~~~a~~vLp~I~k-------~~rt~va~Fle~~g~~e~AL~~---------s~D~d~---rFelal~lgrl~iA~ 657 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIPK-------EIRTKVAHFLESQGMKEQALEL---------STDPDQ---RFELALKLGRLDIAF 657 (794)
T ss_pred hhhccccccccccccCch-------hhhhhHHhHhhhccchHhhhhc---------CCChhh---hhhhhhhcCcHHHHH
Confidence 345666666554444431 1233444455555655555543 112211 112335566677666
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038622 111 SFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRD 190 (587)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 190 (587)
++..+.. +..-|..|..+....+++..|.+.|..... +..|+-.+...|+-+....+-....+.|
T Consensus 658 ~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g 722 (794)
T KOG0276|consen 658 DLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG 722 (794)
T ss_pred HHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc
Confidence 6554432 344567777777777777777776665543 2345555555666554444444433333
Q ss_pred CCCChhhHHHHHHHHhccCCHHHHHHHHHH
Q 038622 191 CSPNTITYNTLISTLCKENQVEEATELARV 220 (587)
Q Consensus 191 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 220 (587)
. .+....++...|+++++.+++..
T Consensus 723 -~-----~N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 723 -K-----NNLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred -c-----cchHHHHHHHcCCHHHHHHHHHh
Confidence 1 11223345556666666665543
No 347
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.40 E-value=0.95 Score=26.23 Aligned_cols=27 Identities=33% Similarity=0.416 Sum_probs=16.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038622 442 AYNPVIQALFRRKRTTEAMRLFREMME 468 (587)
Q Consensus 442 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 468 (587)
+++.++..|...|++++|..++++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 455666666666666666666666654
No 348
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=89.33 E-value=30 Score=36.01 Aligned_cols=227 Identities=13% Similarity=0.023 Sum_probs=117.6
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCH----H---hHHHH-HHHHHccCChHHHHHHHHHHHHCC----CCCCHHHHHHH
Q 038622 239 GLCLTSNFDVAMELFQEMKTKGCQPDE----F---TYNML-IDSLCSRGMLEEALKLLKEMESSG----CARNVVTYNTL 306 (587)
Q Consensus 239 ~~~~~~~~~~a~~~~~~~~~~~~~~~~----~---~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l 306 (587)
......++.+|..+..++...-..|+. . .+..+ +......|++++|+++.+.....- ..+.......+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 344567888888888877653212221 1 22222 234456788999998888776541 12334456667
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHH---HHHHH--HHHHHhcCC--HHHHHHHHHHHHHcC--CCC----CHhhH
Q 038622 307 IDGFCKLKRIEEAEEIFDEMEIQGISRNSV---TYNTL--IDGLCKSRR--VEDAAQLMDQMIMEG--LKP----DKFTY 373 (587)
Q Consensus 307 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l--~~~~~~~~~--~~~A~~~~~~~~~~~--~~~----~~~~~ 373 (587)
+.+..-.|++++|..+..+..+..-.-+.. .|..+ ...+...|+ +.+....+....... -.| -..+.
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 778888899999998887765432112222 22222 233455663 233333333333210 011 12233
Q ss_pred HHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCcc--hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC----ChHhHHHH
Q 038622 374 NSLLTYYCRA-GDIKRAADIVQNMTSNGCEPDIV--TYGTLIGGLCKAGRVEVASKLLRSIQMKGIVL----TPQAYNPV 446 (587)
Q Consensus 374 ~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~~l 446 (587)
..+..++.+. +...++..-++-.......|-.. .+..|+.+....|+.++|...+.++......+ +..+....
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 3444444441 12222222222222222222211 22367788888999999999988887652222 21222222
Q ss_pred HH--HHHhcCCHHHHHHHHHH
Q 038622 447 IQ--ALFRRKRTTEAMRLFRE 465 (587)
Q Consensus 447 ~~--~~~~~g~~~~A~~~~~~ 465 (587)
+. .....|+..+|.....+
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHh
Confidence 22 23457888888777666
No 349
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=89.26 E-value=2.5 Score=40.93 Aligned_cols=89 Identities=19% Similarity=0.122 Sum_probs=50.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHH
Q 038622 380 YCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEA 459 (587)
Q Consensus 380 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 459 (587)
+...|+...|...+..+....+.........|+......|-...|..++.+.+... ...+.++..+++++....+.+.|
T Consensus 617 wr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a 695 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGA 695 (886)
T ss_pred eeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHH
Confidence 34456666666666665543222222334455666666666666666666555543 22344555666666666666666
Q ss_pred HHHHHHHHhc
Q 038622 460 MRLFREMMEK 469 (587)
Q Consensus 460 ~~~~~~~~~~ 469 (587)
++.|+++.+.
T Consensus 696 ~~~~~~a~~~ 705 (886)
T KOG4507|consen 696 LEAFRQALKL 705 (886)
T ss_pred HHHHHHHHhc
Confidence 6666666665
No 350
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=88.87 E-value=21 Score=33.62 Aligned_cols=97 Identities=21% Similarity=0.177 Sum_probs=62.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC------CCCCHHHHHHH
Q 038622 444 NPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERG------FLPEFSSFYML 517 (587)
Q Consensus 444 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~------~~p~~~~~~~l 517 (587)
...+..+.+.|-+..|.++.+-+...+...|+......+..++-..++++--+++++...... .-|+. ....
T Consensus 107 ~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~--a~S~ 184 (360)
T PF04910_consen 107 FRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNF--AFSI 184 (360)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccH--HHHH
Confidence 345567778888999999988888876333777777777777655555777777777655410 12332 3334
Q ss_pred HHHHHccCCH---------------hHHHHHHHHHHhcCC
Q 038622 518 AEGLVSLGKE---------------ETLVELIDMVMDKAK 542 (587)
Q Consensus 518 ~~~~~~~g~~---------------~~A~~~~~~~~~~~~ 542 (587)
+-++...++. +.|...+.+++..-|
T Consensus 185 aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 185 ALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred HHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 4445555555 777777776665444
No 351
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.66 E-value=23 Score=33.88 Aligned_cols=160 Identities=13% Similarity=-0.024 Sum_probs=85.9
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcC-CCCC--------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhH--H
Q 038622 306 LIDGFCKLKRIEEAEEIFDEMEIQG-ISRN--------SVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTY--N 374 (587)
Q Consensus 306 l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--~ 374 (587)
++.+-.-.|++.+|++-...|...- ..|. ......++..+...+.++.|...|..+.+..-..|...+ .
T Consensus 329 iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nl 408 (629)
T KOG2300|consen 329 IVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNL 408 (629)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3334445788888888777775431 1122 112223333345667888888888887764323333322 2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCC-C-----cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHh------
Q 038622 375 SLLTYYCRAGDIKRAADIVQNMTSNGCEP-D-----IVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQA------ 442 (587)
Q Consensus 375 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------ 442 (587)
.++..|.+.|+.+.-.++++.+-..+..+ + ...+..-+-....++++.+|...+++..+.. +.+-
T Consensus 409 nlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma---naed~~rL~a 485 (629)
T KOG2300|consen 409 NLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA---NAEDLNRLTA 485 (629)
T ss_pred hHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc---chhhHHHHHH
Confidence 34556777777666555555443211000 0 0111112222346788888888888777641 2222
Q ss_pred --HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038622 443 --YNPVIQALFRRKRTTEAMRLFREMME 468 (587)
Q Consensus 443 --~~~l~~~~~~~g~~~~A~~~~~~~~~ 468 (587)
...+.......|+..++.+...-+.+
T Consensus 486 ~~LvLLs~v~lslgn~~es~nmvrpamq 513 (629)
T KOG2300|consen 486 CSLVLLSHVFLSLGNTVESRNMVRPAMQ 513 (629)
T ss_pred HHHHHHHHHHHHhcchHHHHhccchHHH
Confidence 23344555567777777776665554
No 352
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=88.57 E-value=4.8 Score=34.34 Aligned_cols=61 Identities=11% Similarity=0.101 Sum_probs=39.6
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCC
Q 038622 481 VFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKF 543 (587)
Q Consensus 481 l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 543 (587)
+.+++...|+ +-++++.-...+... +.+..+|..-+.+....=+.++|..-+.++++.+|.
T Consensus 236 y~QC~L~~~e-~yevleh~seiL~~~-~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 236 YCQCLLKKEE-YYEVLEHCSEILRHH-PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred HHHHHhhHHH-HHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 3344445566 667777777776642 226677777777777766777777777777777665
No 353
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=88.47 E-value=32 Score=35.30 Aligned_cols=18 Identities=33% Similarity=0.412 Sum_probs=9.6
Q ss_pred HHHHhcCCHHHHHHHHHH
Q 038622 168 SGLCKLGEVEEAVEILNQ 185 (587)
Q Consensus 168 ~~~~~~g~~~~a~~~~~~ 185 (587)
..+.-+|+++.|++.+-.
T Consensus 266 ~~LlLtgqFE~AI~~L~~ 283 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR 283 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHh
Confidence 444455666666665554
No 354
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.21 E-value=11 Score=29.59 Aligned_cols=52 Identities=10% Similarity=0.009 Sum_probs=25.3
Q ss_pred hcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038622 67 EEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSE 119 (587)
Q Consensus 67 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 119 (587)
..++.+++..++..+.-.- |.....-..-+..+...|++.+|..+|+.+...
T Consensus 22 ~~~d~~D~e~lLdALrvLr-P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLR-PNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHhC-CCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 3555555555555554432 222222233334455556666666666555543
No 355
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=88.12 E-value=36 Score=35.46 Aligned_cols=225 Identities=16% Similarity=0.083 Sum_probs=122.4
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCCH-------hhHHHHHH-HHHhcCChHHHHHHHHHHHHcC----CCCCHHhHHHH
Q 038622 204 TLCKENQVEEATELARVLTSKGILPDV-------CTFNSLIQ-GLCLTSNFDVAMELFQEMKTKG----CQPDEFTYNML 271 (587)
Q Consensus 204 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l 271 (587)
.....+++.+|..++.++...-..|+. ..+..+-. .....|+++.|.++.+.....- ..+....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 445678899999988887654222221 12333322 3446789999999988877641 12334556677
Q ss_pred HHHHHccCChHHHHHHHHHHHHCCCCCCHHHH---HH--HHHHHHccCCH--HHHHHHHHHHHHcC---CCC---CHHHH
Q 038622 272 IDSLCSRGMLEEALKLLKEMESSGCARNVVTY---NT--LIDGFCKLKRI--EEAEEIFDEMEIQG---ISR---NSVTY 338 (587)
Q Consensus 272 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~--l~~~~~~~~~~--~~a~~~~~~~~~~~---~~~---~~~~~ 338 (587)
+.+..-.|++++|..+.....+.....+...+ .. -...+...|+. .+....+....... .+. -..+.
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 77888889999999988877654222232222 22 23345556632 33333333332221 111 12233
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH----cCCCCCHh--hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchH----
Q 038622 339 NTLIDGLCKSRRVEDAAQLMDQMIM----EGLKPDKF--TYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTY---- 408 (587)
Q Consensus 339 ~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---- 408 (587)
..+..++.+ .+.+..-...... ....|-.. .+..++.+....|+.++|...+.++......+....+
T Consensus 584 ~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~ 660 (894)
T COG2909 584 AQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAA 660 (894)
T ss_pred HHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 334444443 3333333332222 21222122 2236778888999999999999988775333221111
Q ss_pred HHH--HHHHHhcCChHHHHHHHHHH
Q 038622 409 GTL--IGGLCKAGRVEVASKLLRSI 431 (587)
Q Consensus 409 ~~l--~~~~~~~~~~~~a~~~~~~~ 431 (587)
... .......|+...+...+.+-
T Consensus 661 ~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 661 AYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred HHHhhHHHhcccCCHHHHHHHHHhc
Confidence 111 12234678888888877663
No 356
>PRK11619 lytic murein transglycosylase; Provisional
Probab=87.97 E-value=35 Score=35.15 Aligned_cols=375 Identities=10% Similarity=0.016 Sum_probs=166.2
Q ss_pred HHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHH--hcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 038622 30 LCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLI--EEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIE 107 (587)
Q Consensus 30 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 107 (587)
..+.|++..+..+...+... +. ..|........ ....+++....+++-.. .|.....-......+.+.+++.
T Consensus 43 a~~~g~~~~~~~~~~~l~d~--pL--~~yl~y~~L~~~l~~~~~~ev~~Fl~~~~~--~P~~~~Lr~~~l~~La~~~~w~ 116 (644)
T PRK11619 43 AWDNRQMDVVEQLMPTLKDY--PL--YPYLEYRQLTQDLMNQPAVQVTNFIRANPT--LPPARSLQSRFVNELARREDWR 116 (644)
T ss_pred HHHCCCHHHHHHHHHhccCC--Cc--HhHHHHHHHHhccccCCHHHHHHHHHHCCC--CchHHHHHHHHHHHHHHccCHH
Confidence 45677777776666665422 22 22222222111 22244544444333221 1333334444445556667777
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHH--HHHHH
Q 038622 108 DALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAV--EILNQ 185 (587)
Q Consensus 108 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~--~~~~~ 185 (587)
..+..+.. .+.+...-.....+....|+.++|.+..+.+=..|. ..+.....++..+.+.|...... +=+..
T Consensus 117 ~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~~~~~~g~lt~~d~w~R~~~ 190 (644)
T PRK11619 117 GLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFSVWQQSGKQDPLAYLERIRL 190 (644)
T ss_pred HHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 66652211 134444455666677777887777666666544432 23445555665555444332211 11222
Q ss_pred HHhCCCCCChhhHHHHHHHHhc------------cCCHHHHHHHHHHHHhCCCCCCH--hhHHHHHHHHHhcCChHHHHH
Q 038622 186 MILRDCSPNTITYNTLISTLCK------------ENQVEEATELARVLTSKGILPDV--CTFNSLIQGLCLTSNFDVAME 251 (587)
Q Consensus 186 ~~~~~~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~ 251 (587)
+...+ +......+...... ..+...+...+.. ++++. .....+.-.-....+.+.|..
T Consensus 191 al~~~---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~~~l~Rlar~d~~~A~~ 262 (644)
T PRK11619 191 AMKAG---NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFART-----TGPTDFTRQMAAVAFASVARQDAENARL 262 (644)
T ss_pred HHHCC---CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhc-----cCCChhhHHHHHHHHHHHHHhCHHHHHH
Confidence 22221 11111111111100 0011111111100 11111 111111111223345566666
Q ss_pred HHHHHHHcC-CCCC--HHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 038622 252 LFQEMKTKG-CQPD--EFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEI 328 (587)
Q Consensus 252 ~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 328 (587)
++....... ..+. ..++..++......+...++...+....... .+.......+......++++.+...+..|..
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~ 340 (644)
T PRK11619 263 MIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPM 340 (644)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCH
Confidence 666653322 1111 1122233322222222445555555433221 2333333334444456666666666655533
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------------CCC--------CCH------hhHHHHHHHHHh
Q 038622 329 QGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIME------------GLK--------PDK------FTYNSLLTYYCR 382 (587)
Q Consensus 329 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------------~~~--------~~~------~~~~~l~~~~~~ 382 (587)
.. .....-..-+++++...|+.++|...|+++... |.+ |.. .....-+..+..
T Consensus 341 ~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~ 419 (644)
T PRK11619 341 EA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYPLKIDKAPKPDSALTQGPEMARVRELMY 419 (644)
T ss_pred hh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCCCCCCCCCchhhhhccChHHHHHHHHHH
Confidence 21 112222333455555566666666666655321 111 000 011122345667
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 038622 383 AGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRS 430 (587)
Q Consensus 383 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 430 (587)
.|....|...+..+... .+......++......|..+.++.....
T Consensus 420 ~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~~ 464 (644)
T PRK11619 420 WNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATIA 464 (644)
T ss_pred CCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHhh
Confidence 78888999888888764 2444556666767778888888776644
No 357
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.77 E-value=16 Score=31.12 Aligned_cols=57 Identities=14% Similarity=0.097 Sum_probs=27.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCcchH------HHHHHHHHhcCChHHHHHHHHHHHHc
Q 038622 378 TYYCRAGDIKRAADIVQNMTSNGCEPDIVTY------GTLIGGLCKAGRVEVASKLLRSIQMK 434 (587)
Q Consensus 378 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~------~~l~~~~~~~~~~~~a~~~~~~~~~~ 434 (587)
......+++.+|+.+|+++....+..+.--| ..-+-++.-..+.-.+...+++..+.
T Consensus 162 ~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~ 224 (288)
T KOG1586|consen 162 QYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQEL 224 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhc
Confidence 3344556777777777776664333221111 11122223335555555555555553
No 358
>PRK09687 putative lyase; Provisional
Probab=87.77 E-value=21 Score=32.25 Aligned_cols=235 Identities=12% Similarity=0.118 Sum_probs=136.6
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH----HHHHHHHHHHHHCCCCCChhh
Q 038622 52 APDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRI----EDALSFIQEMVSEGFNPDQFT 127 (587)
Q Consensus 52 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~ 127 (587)
.+|..+....+.++...|. +.+...+..+... .+...-...+.++.+.|+. +++...+..+... .++..+
T Consensus 34 d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~V 107 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGG-QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACV 107 (280)
T ss_pred CCCHHHHHHHHHHHHhcCc-chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHH
Confidence 4677777777777776664 3444444444432 3555556666677777763 4677777766443 456666
Q ss_pred HHHHHHHHHhcCCh-----HHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 038622 128 YNTLVNGLCKVGHV-----KQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLI 202 (587)
Q Consensus 128 ~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 202 (587)
....+.++...+.. ..+.+.+..... .++..+-...+.++.+.++ +.++..+-.+... ++.......+
T Consensus 108 R~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~ 180 (280)
T PRK09687 108 RASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAA 180 (280)
T ss_pred HHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHH
Confidence 55556665554321 233444444433 3455666667777777776 4566666666653 2444544455
Q ss_pred HHHhccC-CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCCh
Q 038622 203 STLCKEN-QVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGML 281 (587)
Q Consensus 203 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 281 (587)
.++...+ +.+.+...+..+.. .++..+-...+.++.+.++. .+...+-...+.+ + .....+.++...|..
T Consensus 181 ~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~ 251 (280)
T PRK09687 181 FALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK 251 (280)
T ss_pred HHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH
Confidence 5555442 23456666666654 23666666777777777774 5555555555443 2 234566777777775
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 038622 282 EEALKLLKEMESSGCARNVVTYNTLIDGFC 311 (587)
Q Consensus 282 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 311 (587)
+|+..+..+.+.. +|..+......++.
T Consensus 252 -~a~p~L~~l~~~~--~d~~v~~~a~~a~~ 278 (280)
T PRK09687 252 -TLLPVLDTLLYKF--DDNEIITKAIDKLK 278 (280)
T ss_pred -hHHHHHHHHHhhC--CChhHHHHHHHHHh
Confidence 6788888877643 46665555555443
No 359
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=87.53 E-value=20 Score=31.88 Aligned_cols=64 Identities=19% Similarity=0.082 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHHHccCCHhHHHHHHH---------------HHHhcCCCCCc---hhhhhhhHHHHHHHHHHHHhcchhh
Q 038622 510 EFSSFYMLAEGLVSLGKEETLVELID---------------MVMDKAKFSDR---ETSMVRGFLKIRKFQDALATFGDIL 571 (587)
Q Consensus 510 ~~~~~~~l~~~~~~~g~~~~A~~~~~---------------~~~~~~~~~~~---~~~~~~~~~~~~~~~~A~~~~~~~~ 571 (587)
++.....++..|++.|++.+|+..+= .....+...+. ....+.-|+-.|+...|...+....
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~ 168 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANELFDTFT 168 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 56666667777777777766665551 11122222222 2333444777788888888877777
Q ss_pred hc
Q 038622 572 DS 573 (587)
Q Consensus 572 ~~ 573 (587)
+.
T Consensus 169 ~~ 170 (260)
T PF04190_consen 169 SK 170 (260)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 360
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=87.33 E-value=15 Score=31.39 Aligned_cols=63 Identities=16% Similarity=0.083 Sum_probs=34.1
Q ss_pred hHHHHHHHHHhcCCH-------HHHHHHHHHHHhcCCCC----C-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 038622 442 AYNPVIQALFRRKRT-------TEAMRLFREMMEKADPP----D-ALTYKHVFRGLCNGGGPIGEAVDFVIEMLER 505 (587)
Q Consensus 442 ~~~~l~~~~~~~g~~-------~~A~~~~~~~~~~~~~~----~-~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 505 (587)
.+..+++.|...|+. ..|.+.|.++......| + ......++....+.|+ +++|.+.+.+++..
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~-~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGN-YDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHcC
Confidence 445556666666653 33444555555432111 1 2233344555666777 77777777777754
No 361
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=87.27 E-value=5.1 Score=28.51 Aligned_cols=67 Identities=15% Similarity=0.219 Sum_probs=40.7
Q ss_pred HHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC--Cc-hhhhhhhHHHHHHHHHHH
Q 038622 496 VDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS--DR-ETSMVRGFLKIRKFQDAL 564 (587)
Q Consensus 496 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~A~ 564 (587)
+.-+++.++. .| |......++..+...|++++|.+.+-.+++.++.. +. ...++.++-..|.-+.-.
T Consensus 8 ~~al~~~~a~--~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv 78 (90)
T PF14561_consen 8 IAALEAALAA--NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLV 78 (90)
T ss_dssp HHHHHHHHHH--STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHH
T ss_pred HHHHHHHHHc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHH
Confidence 3444555553 35 67888888888888888888888888888877654 22 455555555555544333
No 362
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=87.17 E-value=5.6 Score=35.73 Aligned_cols=101 Identities=17% Similarity=0.194 Sum_probs=76.9
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHH
Q 038622 441 QAYNPVIQALFRRKRTTEAMRLFREMMEKAD---PPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYM 516 (587)
Q Consensus 441 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~ 516 (587)
..|..=+.-|++..++..|...|.+.++... ..+...|.+-..+-...|+ +..|+.-..+++. +.| ...++..
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~N-yRs~l~Dcs~al~--~~P~h~Ka~~R 158 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGN-YRSALNDCSAALK--LKPTHLKAYIR 158 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHh--cCcchhhhhhh
Confidence 4566677888888889999999998887531 2235566666666677788 8888888888887 567 5778888
Q ss_pred HHHHHHccCCHhHHHHHHHHHHhcCCCC
Q 038622 517 LAEGLVSLGKEETLVELIDMVMDKAKFS 544 (587)
Q Consensus 517 l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 544 (587)
=+.++....++++|..+.+..+....+.
T Consensus 159 ~Akc~~eLe~~~~a~nw~ee~~~~d~e~ 186 (390)
T KOG0551|consen 159 GAKCLLELERFAEAVNWCEEGLQIDDEA 186 (390)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 8888888999999999988886655543
No 363
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=86.76 E-value=12 Score=28.66 Aligned_cols=67 Identities=12% Similarity=0.104 Sum_probs=37.1
Q ss_pred CCcchHHHHHHHHHhcC---ChHHHHHHHHHHHHc-CCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038622 403 PDIVTYGTLIGGLCKAG---RVEVASKLLRSIQMK-GIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEK 469 (587)
Q Consensus 403 ~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (587)
++..+-..+++++.++. +..+.+.+++.+.+. .+....+-...++-++.+.++|++++++.+..++.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 44555555666665543 345556666666642 22222234445556666666777777666666664
No 364
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=86.70 E-value=3.5 Score=36.89 Aligned_cols=98 Identities=17% Similarity=0.065 Sum_probs=76.7
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 038622 405 IVTYGTLIGGLCKAGRVEVASKLLRSIQMK---GIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHV 481 (587)
Q Consensus 405 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 481 (587)
...|..=++-|.+..++..|...|.+.++. +...+...|++-+.+....|++..|+.=...++..+ |.....+..-
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~-P~h~Ka~~R~ 159 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK-PTHLKAYIRG 159 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhhhhh
Confidence 456777788889999999999999988776 333345677777888888999999999999998864 4455566666
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHH
Q 038622 482 FRGLCNGGGPIGEAVDFVIEMLE 504 (587)
Q Consensus 482 ~~~~~~~~~~~~~A~~~~~~~~~ 504 (587)
..++..... +++|....+..++
T Consensus 160 Akc~~eLe~-~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 160 AKCLLELER-FAEAVNWCEEGLQ 181 (390)
T ss_pred hHHHHHHHH-HHHHHHHHhhhhh
Confidence 777778787 8889888888765
No 365
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.14 E-value=22 Score=30.97 Aligned_cols=209 Identities=14% Similarity=0.148 Sum_probs=128.9
Q ss_pred CCCCCHHhHHHHHHHH-HccCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHHHHc---CC-
Q 038622 260 GCQPDEFTYNMLIDSL-CSRGMLEEALKLLKEMESSGCARN---VVTYNTLIDGFCKLKRIEEAEEIFDEMEIQ---GI- 331 (587)
Q Consensus 260 ~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~- 331 (587)
+..||...-+..-..- .+..++++|+.-|++.++...... ..++..++....+.+++++....|.+++.. .+
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 3456655433322211 244578999999999887642222 345567788899999999999999887542 11
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--
Q 038622 332 -SRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIME--GLKPD---KFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEP-- 403 (587)
Q Consensus 332 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-- 403 (587)
.-+....+.++.......+.+--..+|+.-+.. ....+ ..|-..+...|...+.+.+-.++++++...-...
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 223456677776666667777666676655432 01111 1244567888888899998888888876531111
Q ss_pred --C-------cchHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCChHhHHHH----HHHHHhcCCHHHHHHHHHHHHh
Q 038622 404 --D-------IVTYGTLIGGLCKAGRVEVASKLLRSIQMK-GIVLTPQAYNPV----IQALFRRKRTTEAMRLFREMME 468 (587)
Q Consensus 404 --~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l----~~~~~~~g~~~~A~~~~~~~~~ 468 (587)
+ .++|..-+..|..+.+-..-..++++.+.. .--|.+.....+ +....+.|++++|-.-|-++.+
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHh
Confidence 1 234555567787888888888888877653 223444433222 2345567888887665554544
No 366
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=85.97 E-value=7 Score=34.18 Aligned_cols=33 Identities=21% Similarity=0.202 Sum_probs=20.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 038622 104 GRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLC 136 (587)
Q Consensus 104 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 136 (587)
+.++=....++.|.+.|+..|..+|..|++.+-
T Consensus 86 ~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfP 118 (406)
T KOG3941|consen 86 THVEFIYTALKYMKEYGVERDLDVYKGLLNVFP 118 (406)
T ss_pred chHHHHHHHHHHHHHhcchhhHHHHHHHHHhCc
Confidence 344445555666666777777777777776543
No 367
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=85.73 E-value=3.1 Score=23.34 Aligned_cols=30 Identities=20% Similarity=0.263 Sum_probs=17.9
Q ss_pred HHHHHHHHHHccCCHhHHHHH--HHHHHhcCC
Q 038622 513 SFYMLAEGLVSLGKEETLVEL--IDMVMDKAK 542 (587)
Q Consensus 513 ~~~~l~~~~~~~g~~~~A~~~--~~~~~~~~~ 542 (587)
.+..++-.+...|++++|+.+ ++-+...++
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 455666777777777777777 335544443
No 368
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=85.59 E-value=10 Score=33.28 Aligned_cols=105 Identities=17% Similarity=0.161 Sum_probs=59.7
Q ss_pred CCCHHHHHHHHHHHHh-----cCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh
Q 038622 52 APDERTFTTLMQGLIE-----EGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQF 126 (587)
Q Consensus 52 ~~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 126 (587)
..|-.+|...+..+.. .+..+-....++.|.+.|+..+..+|..|++.+=+- ..-|. .
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKg----------------kfiP~-n 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKG----------------KFIPQ-N 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccc----------------ccccH-H
Confidence 3455566666665543 244555555666677777777777776666543221 11111 1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCC
Q 038622 127 TYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGE 175 (587)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 175 (587)
.+......|-++ -+-+++++++|...|+.||..+-..++.++.+.+-
T Consensus 127 vfQ~~F~HYP~Q--Q~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 127 VFQKVFLHYPQQ--QNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHhhCchh--hhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 222222223222 24567777888777887887777777777766554
No 369
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.58 E-value=1.4 Score=39.53 Aligned_cols=120 Identities=13% Similarity=-0.061 Sum_probs=74.7
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHH
Q 038622 380 YCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEA 459 (587)
Q Consensus 380 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 459 (587)
....|.++.|++.+...+..++ +....|..-..++++.+++..|++-+......+.. +..-|-.-..+....|+|++|
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp-~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNP-PLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred HhcCcchhhhhcccccccccCC-chhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhchHHH
Confidence 4456778888888887777533 35556666677777888888888877777764322 223444445556667888888
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 038622 460 MRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLE 504 (587)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 504 (587)
.+.+..+.+.++.+....+. -...-..++ .++-...+++..+
T Consensus 202 a~dl~~a~kld~dE~~~a~l--KeV~p~a~k-i~e~~~k~er~~~ 243 (377)
T KOG1308|consen 202 AHDLALACKLDYDEANSATL--KEVFPNAGK-IEEHRRKYERARE 243 (377)
T ss_pred HHHHHHHHhccccHHHHHHH--HHhccchhh-hhhchhHHHHHHH
Confidence 88888888776554444332 222333444 5555555555553
No 370
>PRK10941 hypothetical protein; Provisional
Probab=85.58 E-value=1.5 Score=38.78 Aligned_cols=68 Identities=7% Similarity=-0.058 Sum_probs=59.3
Q ss_pred HHHHHHHHccCCHhHHHHHHHHHHhcCCCCCc-hhhhhhhHHHHHHHHHHHHhcchhhhccCchhhhhh
Q 038622 515 YMLAEGLVSLGKEETLVELIDMVMDKAKFSDR-ETSMVRGFLKIRKFQDALATFGDILDSRMPRKTFRS 582 (587)
Q Consensus 515 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 582 (587)
.++-.+|.+.++++.|.+..+.++...|+... +..-+..|.+.|.+..|..-++..++.-+.+.+...
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 45667889999999999999999999998754 788888999999999999999999998877766544
No 371
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=85.55 E-value=26 Score=31.14 Aligned_cols=56 Identities=14% Similarity=0.232 Sum_probs=29.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 038622 130 TLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQM 186 (587)
Q Consensus 130 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 186 (587)
.....|...|.+.+|.++.+..+..+ +.+...+..++..+...||--.+.+-|+.+
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 34455555566666666665555542 224445555555555566544444444443
No 372
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=85.47 E-value=7.6 Score=27.91 Aligned_cols=58 Identities=17% Similarity=0.165 Sum_probs=33.9
Q ss_pred HhCCCCHHHHHHHHHHHHHcCC---CCC-----HHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC
Q 038622 486 CNGGGPIGEAVDFVIEMLERGF---LPE-----FSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS 544 (587)
Q Consensus 486 ~~~~~~~~~A~~~~~~~~~~~~---~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 544 (587)
.+.|+ +.+|.+.+.+..+... .+. ..+...++.+....|++++|...++++++.....
T Consensus 9 ~~~~d-y~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 9 LRSGD-YSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HHcCC-HHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 34555 6777666666553211 111 2334556677777777777777777777655543
No 373
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=85.44 E-value=2.4 Score=28.72 Aligned_cols=49 Identities=14% Similarity=0.089 Sum_probs=28.8
Q ss_pred hCCCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHccCCHhHHHHHHHH
Q 038622 487 NGGGPIGEAVDFVIEMLERGFLP--EFSSFYMLAEGLVSLGKEETLVELIDM 536 (587)
Q Consensus 487 ~~~~~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 536 (587)
...+ .++|+..++++++.-..| ...++..|+.+|...|++.+.+++.-.
T Consensus 18 ~~~~-~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 18 HQNE-TQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred ccch-HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 677777777777643222 133445566667777777776665543
No 374
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=85.22 E-value=1.5 Score=22.28 Aligned_cols=17 Identities=35% Similarity=0.456 Sum_probs=7.0
Q ss_pred HHHHHHhcCCHHHHHHH
Q 038622 446 VIQALFRRKRTTEAMRL 462 (587)
Q Consensus 446 l~~~~~~~g~~~~A~~~ 462 (587)
++..+...|++++|..+
T Consensus 7 la~~~~~~G~~~eA~~~ 23 (26)
T PF07721_consen 7 LARALLAQGDPDEAERL 23 (26)
T ss_pred HHHHHHHcCCHHHHHHH
Confidence 33344444444444433
No 375
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=85.08 E-value=19 Score=29.21 Aligned_cols=132 Identities=11% Similarity=0.131 Sum_probs=61.9
Q ss_pred HHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 038622 42 MMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGF 121 (587)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 121 (587)
..+.+.+.++++++..+..++..+.+.|++.....+++.-. ++++..+-..|+. ..+.+..+.++=-+|.++
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~V---i~DSk~lA~~LLs---~~~~~~~~~Ql~lDMLkR-- 87 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHV---IPDSKPLACQLLS---LGNQYPPAYQLGLDMLKR-- 87 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcc---cCCcHHHHHHHHH---hHccChHHHHHHHHHHHH--
Confidence 33344445566777777777777777776665544433221 1222222222211 112233344443344332
Q ss_pred CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038622 122 NPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMI 187 (587)
Q Consensus 122 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 187 (587)
=...+..++..+...|++-+|+.+.+..... +......++.+..+.+|...-..+|+-..
T Consensus 88 --L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 88 --LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred --hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 0113445566666777777777766654221 11122334455555555444444444333
No 376
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.90 E-value=18 Score=35.64 Aligned_cols=133 Identities=14% Similarity=0.100 Sum_probs=93.3
Q ss_pred hhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 038622 21 STFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGF 100 (587)
Q Consensus 21 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 100 (587)
...+.++..+-++|-.++|.++ .+|+..-.. ...+.|+++.|.++..++. +..-|..|..+.
T Consensus 615 ~~rt~va~Fle~~g~~e~AL~~---------s~D~d~rFe---lal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~a 676 (794)
T KOG0276|consen 615 EIRTKVAHFLESQGMKEQALEL---------STDPDQRFE---LALKLGRLDIAFDLAVEAN------SEVKWRQLGDAA 676 (794)
T ss_pred hhhhhHHhHhhhccchHhhhhc---------CCChhhhhh---hhhhcCcHHHHHHHHHhhc------chHHHHHHHHHH
Confidence 3556777777777777777553 344433322 2346789999988765542 566789999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHH
Q 038622 101 CKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAV 180 (587)
Q Consensus 101 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 180 (587)
...|++..|.+.|.+... |..|+..+...|+.+....+-....+.|.. + ....+|...|+++++.
T Consensus 677 l~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~-N-----~AF~~~~l~g~~~~C~ 741 (794)
T KOG0276|consen 677 LSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN-N-----LAFLAYFLSGDYEECL 741 (794)
T ss_pred hhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc-c-----hHHHHHHHcCCHHHHH
Confidence 999999999999887653 445677777788877777776777666532 2 3345677889999998
Q ss_pred HHHHHH
Q 038622 181 EILNQM 186 (587)
Q Consensus 181 ~~~~~~ 186 (587)
+++..-
T Consensus 742 ~lLi~t 747 (794)
T KOG0276|consen 742 ELLIST 747 (794)
T ss_pred HHHHhc
Confidence 888664
No 377
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=84.87 E-value=5.9 Score=28.17 Aligned_cols=63 Identities=13% Similarity=0.171 Sum_probs=43.9
Q ss_pred ChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 038622 35 QIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVH 98 (587)
Q Consensus 35 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 98 (587)
|.=++.+-++.+...++-|++.+..+.++++.+.+++..|.++++.+.... ..+...|..++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence 344566777777777778888888888888888888888888888776432 223344544444
No 378
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=84.61 E-value=13 Score=26.89 Aligned_cols=34 Identities=12% Similarity=0.190 Sum_probs=12.5
Q ss_pred CCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 038622 399 NGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQ 432 (587)
Q Consensus 399 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 432 (587)
.++.|++.+....+++|.+.+++..|.++|+-+.
T Consensus 39 ~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 39 YDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp SSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred cccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3333444444444444444444444444444433
No 379
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=84.38 E-value=26 Score=31.82 Aligned_cols=54 Identities=17% Similarity=0.198 Sum_probs=33.4
Q ss_pred HHHHHHHHccCCHhHHHHHHHHHHhcCCCCCchhhhh-------hhHHHHHHHHHHHHhcc
Q 038622 515 YMLAEGLVSLGKEETLVELIDMVMDKAKFSDRETSMV-------RGFLKIRKFQDALATFG 568 (587)
Q Consensus 515 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~A~~~~~ 568 (587)
..++..|...++|.+|+.+...++..-..-|-...++ .+|....++.+|...+.
T Consensus 132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLT 192 (411)
T KOG1463|consen 132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLT 192 (411)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHH
Confidence 4588999999999999988877665433322222222 33555555555555443
No 380
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=84.17 E-value=52 Score=33.56 Aligned_cols=123 Identities=11% Similarity=0.058 Sum_probs=76.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCC--cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC
Q 038622 377 LTYYCRAGDIKRAADIVQNMTSNGCEPD--IVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRK 454 (587)
Q Consensus 377 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 454 (587)
.-++..-|+-++|..+.+++.... .|- ..-...++.+|+..|+.....+++.-.... ...|..-...++-.+.-..
T Consensus 508 GiaL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~ 585 (929)
T KOG2062|consen 508 GIALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFR 585 (929)
T ss_pred hHHHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEec
Confidence 344566677788888888887642 222 223345677888888888777777765543 2223333334444455567
Q ss_pred CHHHHHHHHHHHHhcCCCCCHH--HHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 038622 455 RTTEAMRLFREMMEKADPPDAL--TYKHVFRGLCNGGGPIGEAVDFVIEMLE 504 (587)
Q Consensus 455 ~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 504 (587)
+++....+.+-+.+. ..|... +-..++-+|+-.| ..+|+.+++.+..
T Consensus 586 dp~~~~s~V~lLses-~N~HVRyGaA~ALGIaCAGtG--~~eAi~lLepl~~ 634 (929)
T KOG2062|consen 586 DPEQLPSTVSLLSES-YNPHVRYGAAMALGIACAGTG--LKEAINLLEPLTS 634 (929)
T ss_pred ChhhchHHHHHHhhh-cChhhhhhHHHHHhhhhcCCC--cHHHHHHHhhhhc
Confidence 788888877766664 234333 2234454555555 4899999999885
No 381
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=83.55 E-value=13 Score=31.27 Aligned_cols=125 Identities=18% Similarity=0.130 Sum_probs=75.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHH
Q 038622 408 YGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKA--DPPDALTYKHVFRGL 485 (587)
Q Consensus 408 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~ 485 (587)
....+..+.+.+...+++...+.-.+.++. +......++..++-.|+|++|..-++-+-... ..+....|..++.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~- 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC- 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH-
Confidence 344566778889999999999888876444 55667788899999999999999888777642 12223344444432
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHH-Hcc-CCHhHHHHHHHHHHhcCCCC
Q 038622 486 CNGGGPIGEAVDFVIEMLERGFLP------EFSSFYMLAEGL-VSL-GKEETLVELIDMVMDKAKFS 544 (587)
Q Consensus 486 ~~~~~~~~~A~~~~~~~~~~~~~p------~~~~~~~l~~~~-~~~-g~~~~A~~~~~~~~~~~~~~ 544 (587)
...-+...+.+..| .+.....|...+ ... |.-+.+..+-+.+.+..|.+
T Consensus 82 ----------ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~ 138 (273)
T COG4455 82 ----------EAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVP 138 (273)
T ss_pred ----------HHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCC
Confidence 11112233322233 344444443333 233 34444555556677777765
No 382
>PRK12798 chemotaxis protein; Reviewed
Probab=82.98 E-value=43 Score=31.67 Aligned_cols=196 Identities=13% Similarity=0.058 Sum_probs=90.7
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HccCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHH
Q 038622 277 SRGMLEEALKLLKEMESSGCARNVVTYNTLIDGF-CKLKRIEEAEEIFDEMEIQGISRN---SVTYNTLIDGLCKSRRVE 352 (587)
Q Consensus 277 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~ 352 (587)
-.|+..++.+.+..+.....++....+..|+.+- ....+...|+..|+...-.- |.+ ......-+....+.|+.+
T Consensus 124 ~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLla-PGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 124 LSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLA-PGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred HcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhC-CchHHHHHHHHHhhHHHHhcCcHH
Confidence 4566777777777666555555555555555433 33456777777777654331 111 112223333445667766
Q ss_pred HHHHHHHHHHHcC-CCCCHhh-HHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 038622 353 DAAQLMDQMIMEG-LKPDKFT-YNSLLTYYCRAGDIKRAADIVQNMTSN-GCEPDIVTYGTLIGGLCKAGRVEVASKLLR 429 (587)
Q Consensus 353 ~A~~~~~~~~~~~-~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 429 (587)
++..+-.+....- ..|-... +..+.....+.++-..- ..+..++.. +..-....|..+++.-.-.|+.+-|.-.-+
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~-~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~ 281 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRD-ARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASE 281 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccH-HHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 6665555544431 1111111 12222233333322111 123333332 111124466667777677777777776666
Q ss_pred HHHHcCCCCCh-HhHHHHHH--HHHhcCCHHHHHHHHHHHHhcCCCCC
Q 038622 430 SIQMKGIVLTP-QAYNPVIQ--ALFRRKRTTEAMRLFREMMEKADPPD 474 (587)
Q Consensus 430 ~~~~~~~~~~~-~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~ 474 (587)
++.......+. .....+.. +-.-..++++|.+.+..+-...+++.
T Consensus 282 ~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~~~ 329 (421)
T PRK12798 282 RALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDRDKLSER 329 (421)
T ss_pred HHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCChh
Confidence 66654211111 11111111 12223456666666665554433333
No 383
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=82.98 E-value=59 Score=33.23 Aligned_cols=63 Identities=14% Similarity=0.112 Sum_probs=35.7
Q ss_pred cHHHHHHHHHhcCC-HHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 038622 162 TYNSLISGLCKLGE-VEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSK 224 (587)
Q Consensus 162 ~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 224 (587)
....++..+....+ -+--.+++..+...-.+....-|..+..++....+.+.+.++++++.+.
T Consensus 176 ~~~yll~l~~s~v~~~efR~~vlr~lv~~y~~~~~PDy~~vc~c~v~Ldd~~~va~ll~kL~~e 239 (929)
T KOG2062|consen 176 NLTYLLELLISLVNNREFRNKVLRLLVKTYLKLPSPDYFSVCQCYVFLDDAEAVADLLEKLVKE 239 (929)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCCCeeeeeeeeEEcCCHHHHHHHHHHHHhc
Confidence 34444444443332 2333344444443311222333556778888899999999999998874
No 384
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=82.77 E-value=43 Score=31.57 Aligned_cols=140 Identities=13% Similarity=0.101 Sum_probs=74.5
Q ss_pred HHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH---HhcCCHH
Q 038622 31 CKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGF---CKEGRIE 107 (587)
Q Consensus 31 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~ 107 (587)
...+|.+.-+.+++.- |-...++..+...+..+|+...|.+++++++-.- ..++......+ ...|..
T Consensus 21 v~~~Dp~~l~~ll~~~-----PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~----e~~~~~~F~~~~~~~~~g~~- 90 (360)
T PF04910_consen 21 VQSHDPNALINLLQKN-----PYHIDTLLQLSEVYRQQGDHAQANDLLERALFAF----ERAFHPSFSPFRSNLTSGNC- 90 (360)
T ss_pred HHccCHHHHHHHHHHC-----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----HHHHHHHhhhhhcccccCcc-
Confidence 3445555444444221 5667777777777778888777777777765320 00111010000 000000
Q ss_pred HHHHHHHHHHHCCCCCChhh---HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHH-hcCCHHHHHHHH
Q 038622 108 DALSFIQEMVSEGFNPDQFT---YNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLC-KLGEVEEAVEIL 183 (587)
Q Consensus 108 ~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~ 183 (587)
++ .-...-|... ....+..+.+.|-+..|.++.+.+...++..|+.....+++.|+ +.++++--++++
T Consensus 91 -------rL-~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~ 162 (360)
T PF04910_consen 91 -------RL-DYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFS 162 (360)
T ss_pred -------cc-CCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHH
Confidence 00 0000112222 23345667788888888888888887654445555555555544 677888777777
Q ss_pred HHHHh
Q 038622 184 NQMIL 188 (587)
Q Consensus 184 ~~~~~ 188 (587)
+....
T Consensus 163 ~~~~~ 167 (360)
T PF04910_consen 163 ESPLA 167 (360)
T ss_pred HhHhh
Confidence 76554
No 385
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=82.71 E-value=31 Score=29.80 Aligned_cols=65 Identities=17% Similarity=0.175 Sum_probs=47.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC
Q 038622 442 AYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPE 510 (587)
Q Consensus 442 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~ 510 (587)
.+.++..++...|++-++++.-.+++... +.+...|..-+.+.+..=+ .++|.+-+.++++ +.|.
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~~-~~nvKA~frRakAhaa~Wn-~~eA~~D~~~vL~--ldps 296 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRHH-PGNVKAYFRRAKAHAAVWN-EAEAKADLQKVLE--LDPS 296 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhhcC-HHHHHHHHHHHHh--cChh
Confidence 34556677777888888888888888874 6666677667777666666 7888888888887 3453
No 386
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=82.48 E-value=16 Score=26.42 Aligned_cols=59 Identities=15% Similarity=0.264 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHH
Q 038622 353 DAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLI 412 (587)
Q Consensus 353 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 412 (587)
+..+-++.+....+.|++......+.+|.+.+|+..|+++++-+... ..+....|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHH
Confidence 45555666666667788888888888888888888888888877654 222222555443
No 387
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=81.42 E-value=4.1 Score=24.13 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=8.5
Q ss_pred HHHHHhcCChHHHHHHHHHHH
Q 038622 412 IGGLCKAGRVEVASKLLRSIQ 432 (587)
Q Consensus 412 ~~~~~~~~~~~~a~~~~~~~~ 432 (587)
+.+|...|+.+.|.++++++.
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHH
Confidence 333444444444444444433
No 388
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=81.41 E-value=36 Score=29.76 Aligned_cols=122 Identities=10% Similarity=0.058 Sum_probs=61.4
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChH-H
Q 038622 346 CKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCR-AGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVE-V 423 (587)
Q Consensus 346 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~ 423 (587)
.+......|+++-+.++..+. .+-.+|..--.+... ..+..+-.+.+.++++..++ +...|..--......|++. .
T Consensus 54 ~~~E~S~RAl~LT~d~i~lNp-AnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npK-NYQvWHHRr~ive~l~d~s~r 131 (318)
T KOG0530|consen 54 AKNEKSPRALQLTEDAIRLNP-ANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPK-NYQVWHHRRVIVELLGDPSFR 131 (318)
T ss_pred hccccCHHHHHHHHHHHHhCc-ccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHHhcCcccc
Confidence 344555566666666665321 111122211111111 12345555666666655333 5555544433444455555 5
Q ss_pred HHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 038622 424 ASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKA 470 (587)
Q Consensus 424 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 470 (587)
=+++.+.|...+-+ +-++|..--+++..-+.++.-+.+..++++.+
T Consensus 132 ELef~~~~l~~DaK-NYHaWshRqW~~r~F~~~~~EL~y~~~Lle~D 177 (318)
T KOG0530|consen 132 ELEFTKLMLDDDAK-NYHAWSHRQWVLRFFKDYEDELAYADELLEED 177 (318)
T ss_pred hHHHHHHHHhcccc-chhhhHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 55566666654322 45566666666666666777777777776655
No 389
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=81.35 E-value=72 Score=33.12 Aligned_cols=135 Identities=10% Similarity=0.034 Sum_probs=83.1
Q ss_pred CCCHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHH---hcCChhHHHHHHHHHHHcCCCCChhhH
Q 038622 17 KPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLI---EEGNLDGALRIREQMVEHGCLVTNVTV 93 (587)
Q Consensus 17 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~~ 93 (587)
.-+...+..||..+.+.|++++....-..|...- |.++..|..-+.-.. ..++..++...|++++..- .+...|
T Consensus 110 ~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~-pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy--~~v~iw 186 (881)
T KOG0128|consen 110 SYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIA-PLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDY--NSVPIW 186 (881)
T ss_pred ccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhccc--ccchHH
Confidence 3456677889999999999887766655555543 677888877665433 4577888888888887653 344445
Q ss_pred HHHHHHHH-------hcCCHHHHHHHHHHHHHC-CCCCC--hhh---HHHHHHHHHhcCChHHHHHHHHHHHhC
Q 038622 94 NVLVHGFC-------KEGRIEDALSFIQEMVSE-GFNPD--QFT---YNTLVNGLCKVGHVKQALEVMDMMLQE 154 (587)
Q Consensus 94 ~~l~~~~~-------~~~~~~~a~~~~~~~~~~-~~~~~--~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~ 154 (587)
...+..+. ..++++..+.+|.+++.. |...+ ... |..+-..|...-..++...++..-+..
T Consensus 187 ~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~ 260 (881)
T KOG0128|consen 187 EEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQ 260 (881)
T ss_pred HHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhc
Confidence 44444333 346788888888888764 21111 112 222333344444445666666665554
No 390
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=81.22 E-value=43 Score=30.50 Aligned_cols=48 Identities=21% Similarity=0.352 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHh--cC----CHHHHHHHHHHHHhC
Q 038622 142 KQALEVMDMMLQEGFDPDVFTYNSLISGLCK--LG----EVEEAVEILNQMILR 189 (587)
Q Consensus 142 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g----~~~~a~~~~~~~~~~ 189 (587)
++.+.+++.+.+.|+..+..++......... .. ....+..+|+.|.+.
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~ 132 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKK 132 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 3455666777777666555444332222222 11 234556666666554
No 391
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.19 E-value=20 Score=32.10 Aligned_cols=48 Identities=15% Similarity=0.220 Sum_probs=23.5
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 038622 455 RTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEML 503 (587)
Q Consensus 455 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~ 503 (587)
++++++.++..=+..|+.||..+...++..+.+.++ +.+|..+...++
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n-~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKEN-YKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhccc-HHHHHHHHHHHH
Confidence 444444444444444555555555555555555554 555544444444
No 392
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=80.77 E-value=1.9 Score=36.29 Aligned_cols=59 Identities=17% Similarity=0.226 Sum_probs=50.0
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCc
Q 038622 485 LCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDR 546 (587)
Q Consensus 485 ~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 546 (587)
..+.++ .+.|.+.+.++++ +.| ....|..++..-.+.|+++.|.+.|++.++.+|....
T Consensus 5 ~~~~~D-~~aaaely~qal~--lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 5 LAESGD-AEAAAELYNQALE--LAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hcccCC-hHHHHHHHHHHhh--cCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 456677 8889999999997 556 6788889999999999999999999999999998754
No 393
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=80.34 E-value=1.3e+02 Score=35.66 Aligned_cols=62 Identities=5% Similarity=-0.083 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 038622 300 VVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIME 364 (587)
Q Consensus 300 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 364 (587)
...|...++.....|+++.|...+-.+.+.+ -+..+...++..-..|+...|+.++++.+..
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 4567777777778888888887776666543 3446666777777888888888888888753
No 394
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=80.33 E-value=4 Score=34.42 Aligned_cols=58 Identities=22% Similarity=0.189 Sum_probs=47.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC
Q 038622 448 QALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP 509 (587)
Q Consensus 448 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p 509 (587)
......++.+.|.++|.+++..- |.....|..+...-.+.|+ ++.|.+.|++.++ ++|
T Consensus 3 ~~~~~~~D~~aaaely~qal~la-p~w~~gwfR~g~~~ekag~-~daAa~a~~~~L~--ldp 60 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELA-PEWAAGWFRLGEYTEKAGE-FDAAAAAYEEVLE--LDP 60 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcC-chhhhhhhhcchhhhhccc-HHHHHHHHHHHHc--CCc
Confidence 34567889999999999999862 5667788888887788888 9999999999998 456
No 395
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=80.27 E-value=4 Score=21.20 Aligned_cols=26 Identities=15% Similarity=0.244 Sum_probs=13.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038622 443 YNPVIQALFRRKRTTEAMRLFREMME 468 (587)
Q Consensus 443 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 468 (587)
+..++..+...|++++|...+.+.++
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 34444455555555555555555443
No 396
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.71 E-value=16 Score=32.65 Aligned_cols=101 Identities=21% Similarity=0.209 Sum_probs=59.9
Q ss_pred CCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhH
Q 038622 157 DPDVFTYNSLISGLCKLGEVEEAVEILNQMILRD---CSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTF 233 (587)
Q Consensus 157 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 233 (587)
+....+....+.......+.+.++..+-++...- ..++. +....++.+ ..-+.++++.++..-...|+-||..++
T Consensus 61 ~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~~ 138 (418)
T KOG4570|consen 61 PVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFTF 138 (418)
T ss_pred CcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHH-HccChHHHHHHHhCcchhccccchhhH
Confidence 3344444444444444566777777666655331 01111 111222222 234566777777777777888888888
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHc
Q 038622 234 NSLIQGLCLTSNFDVAMELFQEMKTK 259 (587)
Q Consensus 234 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 259 (587)
+.++..+.+.+++.+|..+...|...
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 88888888888888887777766654
No 397
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=79.34 E-value=79 Score=32.41 Aligned_cols=185 Identities=16% Similarity=0.199 Sum_probs=90.7
Q ss_pred HHHHHHHHHHcCCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcc----------hHHHHHHHHHhcCC
Q 038622 354 AAQLMDQMIMEGLKPD---KFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIV----------TYGTLIGGLCKAGR 420 (587)
Q Consensus 354 A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----------~~~~l~~~~~~~~~ 420 (587)
-..++.+|...--.|+ ..+...++-.|....+++.-+++.+.+... ||.. .|.-.++---+-|+
T Consensus 182 l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GD 258 (1226)
T KOG4279|consen 182 LNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGD 258 (1226)
T ss_pred HHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCcc
Confidence 3344555554322232 234445555666666777777776666553 2110 11111111123466
Q ss_pred hHHHHHHHHHHHHcCCCCChHhHHHHHHHH---------HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCC
Q 038622 421 VEVASKLLRSIQMKGIVLTPQAYNPVIQAL---------FRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGP 491 (587)
Q Consensus 421 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---------~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 491 (587)
-++|+.+.-.+.++.-...+.+|...++.| ...+..+.|++.|+++.+. .|....-.++...+...|..
T Consensus 259 RakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFev--eP~~~sGIN~atLL~aaG~~ 336 (1226)
T KOG4279|consen 259 RAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEV--EPLEYSGINLATLLRAAGEH 336 (1226)
T ss_pred HHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhcc--CchhhccccHHHHHHHhhhh
Confidence 677777666666553222333333333322 2345567778888887773 45444333333344444543
Q ss_pred HHHHHHHHHHH------H-HcCCCCCHHHHHHHHH---HHHccCCHhHHHHHHHHHHhcCCC
Q 038622 492 IGEAVDFVIEM------L-ERGFLPEFSSFYMLAE---GLVSLGKEETLVELIDMVMDKAKF 543 (587)
Q Consensus 492 ~~~A~~~~~~~------~-~~~~~p~~~~~~~l~~---~~~~~g~~~~A~~~~~~~~~~~~~ 543 (587)
++...++-.-. + ++|.-.....|+-.+. +-.-.+++.+|++..+.+.+..|.
T Consensus 337 Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P 398 (1226)
T KOG4279|consen 337 FENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPP 398 (1226)
T ss_pred ccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCc
Confidence 44433332221 1 1221112222332222 223457899999999999988765
No 398
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.32 E-value=69 Score=31.69 Aligned_cols=95 Identities=13% Similarity=0.085 Sum_probs=48.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHcc
Q 038622 448 QALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLER---GFLPEFSSFYMLAEGLVSL 524 (587)
Q Consensus 448 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~ 524 (587)
..+.+.|-+..|.++.+-++..+...|+.....++..|+-..++|+=-+++++..-.. ..-|+...-..|+..|...
T Consensus 350 ~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~ 429 (665)
T KOG2422|consen 350 QSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRK 429 (665)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhc
Confidence 3444556666666666666665422355555555555544444355555555544211 1234554445555555544
Q ss_pred CC---HhHHHHHHHHHHhcCC
Q 038622 525 GK---EETLVELIDMVMDKAK 542 (587)
Q Consensus 525 g~---~~~A~~~~~~~~~~~~ 542 (587)
.. .+.|...+.+++..-|
T Consensus 430 ~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 430 NEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred CChhhHHHHHHHHHHHHHhCc
Confidence 33 3455555555555444
No 399
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.03 E-value=83 Score=32.45 Aligned_cols=102 Identities=11% Similarity=0.160 Sum_probs=58.9
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 038622 63 QGLIEEGNLDGALRIREQMVEHGCLV--TNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGH 140 (587)
Q Consensus 63 ~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 140 (587)
.-+.+.+.+++|+.+.+.....- +. ...+...++..+...|++++|-...-.|... +..-|......+...++
T Consensus 364 ~Wll~~k~yeeAl~~~k~~~~~~-~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~ 438 (846)
T KOG2066|consen 364 DWLLEKKKYEEALDAAKASIGNE-ERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQ 438 (846)
T ss_pred HHHHHhhHHHHHHHHHHhccCCc-cccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccc
Confidence 34456677888877766554431 21 3345666677777788888888887777754 55566666666666665
Q ss_pred hHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh
Q 038622 141 VKQALEVMDMMLQEGFDPDVFTYNSLISGLCK 172 (587)
Q Consensus 141 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 172 (587)
......++ .......++..|..++..+..
T Consensus 439 l~~Ia~~l---Pt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 439 LTDIAPYL---PTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cchhhccC---CCCCcccCchHHHHHHHHHHH
Confidence 54433322 111111234556655555554
No 400
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=78.84 E-value=4.9 Score=35.58 Aligned_cols=66 Identities=8% Similarity=0.010 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHH-HHHHHHhcCCHHHHHHHHHHHHHC
Q 038622 53 PDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNV-LVHGFCKEGRIEDALSFIQEMVSE 119 (587)
Q Consensus 53 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~ 119 (587)
.|+..|...+.-..+.|.+.+...++.++.+.. |.+...|.. -..-+...++++.++.+|...++.
T Consensus 105 ~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh-P~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~ 171 (435)
T COG5191 105 NDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH-PLNVDLWIYCCAFELFEIANIESSRAMFLKGLRM 171 (435)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCceeeeeeccchhhhhccHHHHHHHHHhhhcc
Confidence 344445444444444445555555555555442 334444432 122233445555555555555444
No 401
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=78.74 E-value=1.1e+02 Score=33.54 Aligned_cols=125 Identities=13% Similarity=0.094 Sum_probs=62.4
Q ss_pred CcchHHHHHHHHHhcCChHH-HHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 038622 404 DIVTYGTLIGGLCKAGRVEV-ASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVF 482 (587)
Q Consensus 404 ~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 482 (587)
+...-...+.++...+..+. +...+..+.. .+++......+.++...|..+.+...+..+++ .++...-...+
T Consensus 755 ~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa 828 (897)
T PRK13800 755 NREVRIAVAKGLATLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAA 828 (897)
T ss_pred CHHHHHHHHHHHHHhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHH
Confidence 44444444445544443322 2333334333 23455555666666666665544444555553 23444444445
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 038622 483 RGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMD 539 (587)
Q Consensus 483 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 539 (587)
.++...+. +++...+..+++ +|+..+...-+.++.+.+....+...+..+++
T Consensus 829 ~aL~~l~~--~~a~~~L~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 829 RALAGAAA--DVAVPALVEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHhccc--cchHHHHHHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 55555543 456666666663 45555555555555554333455666655555
No 402
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=77.23 E-value=31 Score=26.53 Aligned_cols=81 Identities=12% Similarity=0.063 Sum_probs=50.4
Q ss_pred CCHHHHHHHHHHHHhc-----CCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCH
Q 038622 454 KRTTEAMRLFREMMEK-----ADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKE 527 (587)
Q Consensus 454 g~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 527 (587)
+.-..-..++++.+.. ....|...+...+ .++.. .+.+.++|..|...|+.. -...|...+..+...|++
T Consensus 40 ~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi-~ya~~---~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~ 115 (126)
T PF08311_consen 40 GKQSGLLELLERCIRKFKDDERYKNDERYLKIWI-KYADL---SSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNF 115 (126)
T ss_dssp CCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHH-HHHTT---BSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-H
T ss_pred CchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHH-HHHHH---ccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCH
Confidence 3444445555555543 1123444333222 33332 448888999888877766 477778888889999999
Q ss_pred hHHHHHHHHHH
Q 038622 528 ETLVELIDMVM 538 (587)
Q Consensus 528 ~~A~~~~~~~~ 538 (587)
++|.++++..+
T Consensus 116 ~~A~~I~~~Gi 126 (126)
T PF08311_consen 116 KKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhC
Confidence 99999888753
No 403
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=77.09 E-value=24 Score=25.14 Aligned_cols=31 Identities=19% Similarity=0.234 Sum_probs=17.2
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038622 439 TPQAYNPVIQALFRRKRTTEAMRLFREMMEK 469 (587)
Q Consensus 439 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (587)
|......++..+...|++++|++.+-.+++.
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4455555666666666666666666665554
No 404
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=77.06 E-value=94 Score=32.04 Aligned_cols=62 Identities=11% Similarity=0.115 Sum_probs=35.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC-------hHHHHHHHHHHHhC
Q 038622 91 VTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGH-------VKQALEVMDMMLQE 154 (587)
Q Consensus 91 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~ 154 (587)
.+| .++-.+.++|++++|.++....... .......+...+..|....+ -+.....|++....
T Consensus 113 p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 113 PIW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp EHH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred ccH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 344 4566677888888888887544432 34444566667776665422 23455555555543
No 405
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=75.65 E-value=59 Score=28.99 Aligned_cols=82 Identities=22% Similarity=0.231 Sum_probs=44.1
Q ss_pred CChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHH-H
Q 038622 438 LTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFY-M 516 (587)
Q Consensus 438 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~-~ 516 (587)
-++.....++..+.+.|++.+|...|-..- .++...+..++......|. +.+.+.+. .
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~----~~~~~~~~~ll~~~~~~~~-----------------~~e~dlfi~R 146 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLGT----DPSAFAYVMLLEEWSTKGY-----------------PSEADLFIAR 146 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS-----HHHHHHHHHHHHHHHHHTS-----------------S--HHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhcC----ChhHHHHHHHHHHHHHhcC-----------------CcchhHHHHH
Confidence 356777888888999998888877664321 1122222122222222232 22333332 2
Q ss_pred HHHHHHccCCHhHHHHHHHHHHhc
Q 038622 517 LAEGLVSLGKEETLVELIDMVMDK 540 (587)
Q Consensus 517 l~~~~~~~g~~~~A~~~~~~~~~~ 540 (587)
.+--|.-.|+...|...++...+.
T Consensus 147 aVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 147 AVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 333466778889999888777766
No 406
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=75.50 E-value=41 Score=29.77 Aligned_cols=20 Identities=15% Similarity=0.072 Sum_probs=12.4
Q ss_pred HHHHHcCChhhHHHHHHhhc
Q 038622 28 KALCKAHQIRPAILMMEEMP 47 (587)
Q Consensus 28 ~~~~~~~~~~~A~~~~~~~~ 47 (587)
+.+.-..||..|...-++..
T Consensus 43 d~LvV~rdF~aal~tCergl 62 (309)
T PF07163_consen 43 DLLVVHRDFQAALETCERGL 62 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455677777776666554
No 407
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=75.25 E-value=12 Score=31.44 Aligned_cols=46 Identities=15% Similarity=0.168 Sum_probs=34.4
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCC
Q 038622 495 AVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAK 542 (587)
Q Consensus 495 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 542 (587)
..+..++.++ ..|++.++..++.++...|+.++|.++.+++...-|
T Consensus 130 ~~~~a~~~l~--~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 130 YIEWAERLLR--RRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHH--hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3344455554 468888888888888888888888888888888777
No 408
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=75.14 E-value=1.3 Score=35.13 Aligned_cols=45 Identities=16% Similarity=0.140 Sum_probs=17.6
Q ss_pred cCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 038622 68 EGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSF 112 (587)
Q Consensus 68 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 112 (587)
.+.+.....+++.+...+...+....+.++..|++.++.++...+
T Consensus 20 ~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~ 64 (143)
T PF00637_consen 20 RNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEF 64 (143)
T ss_dssp TT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHT
T ss_pred CCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHH
Confidence 334444444444444333233344444444444444433333333
No 409
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=74.76 E-value=10 Score=25.89 Aligned_cols=17 Identities=24% Similarity=0.536 Sum_probs=7.5
Q ss_pred hcCCHHHHHHHHHHHHh
Q 038622 452 RRKRTTEAMRLFREMME 468 (587)
Q Consensus 452 ~~g~~~~A~~~~~~~~~ 468 (587)
...+.++|+..+.++++
T Consensus 18 ~~~~~~~Al~~W~~aL~ 34 (80)
T PF10579_consen 18 HQNETQQALQKWRKALE 34 (80)
T ss_pred ccchHHHHHHHHHHHHh
Confidence 33344444444444444
No 410
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=74.62 E-value=62 Score=28.74 Aligned_cols=122 Identities=17% Similarity=0.138 Sum_probs=69.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcC-----CCCCh--------hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH
Q 038622 62 MQGLIEEGNLDGALRIREQMVEHG-----CLVTN--------VTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTY 128 (587)
Q Consensus 62 ~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~--------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 128 (587)
...+.-..||..|+...++..+.- ...+. .....-|++++..|++.+++.+.-+.-+.--+.-..+.
T Consensus 42 ad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIl 121 (309)
T PF07163_consen 42 ADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKIL 121 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHH
Confidence 334445567888887777765431 01111 11223456777778887777765444332111123445
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh-----cCCHHHHHHHH
Q 038622 129 NTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCK-----LGEVEEAVEIL 183 (587)
Q Consensus 129 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~a~~~~ 183 (587)
..-|-.|.+.+.+..+.++-..-++..-+-+...|..++..|.. .|.+++|+++.
T Consensus 122 eLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 122 ELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 55666677888888777777777664323334446666665554 57777777665
No 411
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=74.31 E-value=22 Score=25.55 Aligned_cols=25 Identities=16% Similarity=0.119 Sum_probs=15.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHh
Q 038622 444 NPVIQALFRRKRTTEAMRLFREMME 468 (587)
Q Consensus 444 ~~l~~~~~~~g~~~~A~~~~~~~~~ 468 (587)
..++......|++++|...++++++
T Consensus 45 l~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 45 LNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3445555566666666666666665
No 412
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=74.25 E-value=29 Score=24.86 Aligned_cols=33 Identities=12% Similarity=0.194 Sum_probs=13.6
Q ss_pred CCCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 038622 399 NGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSI 431 (587)
Q Consensus 399 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 431 (587)
.++.|++.+....+++|.+.+++..|..+++-+
T Consensus 36 ~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~v 68 (103)
T cd00923 36 YDLVPEPKVIEAALRACRRVNDFALAVRILEAI 68 (103)
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 333344444444444444444444444444433
No 413
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=73.50 E-value=36 Score=25.55 Aligned_cols=87 Identities=22% Similarity=0.251 Sum_probs=50.1
Q ss_pred hcCCHHHHHHHHHHHHhc--CCCCC---------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cC-CCCCH----
Q 038622 452 RRKRTTEAMRLFREMMEK--ADPPD---------ALTYKHVFRGLCNGGGPIGEAVDFVIEMLE----RG-FLPEF---- 511 (587)
Q Consensus 452 ~~g~~~~A~~~~~~~~~~--~~~~~---------~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~----~~-~~p~~---- 511 (587)
..|-+++|..-+.++.+. .+||. ...+..+..++...|+ +++++...++++. +| +..|.
T Consensus 21 ~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgr-y~e~L~sA~~aL~YFNRRGEL~qdeGklW 99 (144)
T PF12968_consen 21 QDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGR-YDECLQSADRALRYFNRRGELHQDEGKLW 99 (144)
T ss_dssp HHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHH--TTSTHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHHHhhccccccccchhH
Confidence 346667766666666542 33432 2334456666777788 8877776666652 22 23332
Q ss_pred -HHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 038622 512 -SSFYMLAEGLVSLGKEETLVELIDMVMD 539 (587)
Q Consensus 512 -~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 539 (587)
.+...-+.++...|+.++|...|+.+.+
T Consensus 100 IaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 100 IAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 2334556677888999999998887654
No 414
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=73.38 E-value=1.6 Score=34.51 Aligned_cols=84 Identities=17% Similarity=0.129 Sum_probs=56.6
Q ss_pred HHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 038622 25 ILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEG 104 (587)
Q Consensus 25 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 104 (587)
.+++.+.+.+.+.....+++.+...+...++...+.++..|++.++.+....+++... ..-...++..+.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~-------~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN-------NYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS-------SS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc-------ccCHHHHHHHHHhcc
Confidence 4567777788888888999988876655678888999999999988788887766211 122234555555666
Q ss_pred CHHHHHHHHHH
Q 038622 105 RIEDALSFIQE 115 (587)
Q Consensus 105 ~~~~a~~~~~~ 115 (587)
.++.+.-++.+
T Consensus 85 l~~~a~~Ly~~ 95 (143)
T PF00637_consen 85 LYEEAVYLYSK 95 (143)
T ss_dssp SHHHHHHHHHC
T ss_pred hHHHHHHHHHH
Confidence 66666555544
No 415
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=73.03 E-value=35 Score=32.48 Aligned_cols=57 Identities=21% Similarity=0.276 Sum_probs=34.8
Q ss_pred HHHHHHcCChhhHHHHHHhhccCCCCCCHH--HHHHHHHHH--HhcCChhHHHHHHHHHHHc
Q 038622 27 IKALCKAHQIRPAILMMEEMPGYGLAPDER--TFTTLMQGL--IEEGNLDGALRIREQMVEH 84 (587)
Q Consensus 27 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~--~~~g~~~~A~~~~~~~~~~ 84 (587)
+..+...+++..|.++|+.+... ++++.. .+..+..+| ...-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34455677777777777777765 444443 333444443 3566777777777776654
No 416
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=72.25 E-value=21 Score=22.27 Aligned_cols=22 Identities=14% Similarity=0.206 Sum_probs=9.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 038622 447 IQALFRRKRTTEAMRLFREMME 468 (587)
Q Consensus 447 ~~~~~~~g~~~~A~~~~~~~~~ 468 (587)
+-++.+.|++++|.+..+.+++
T Consensus 8 Aig~ykl~~Y~~A~~~~~~lL~ 29 (53)
T PF14853_consen 8 AIGHYKLGEYEKARRYCDALLE 29 (53)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHh
Confidence 3344444444444444444444
No 417
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=72.07 E-value=74 Score=28.51 Aligned_cols=185 Identities=10% Similarity=0.115 Sum_probs=108.2
Q ss_pred CCCHhhHHHHHHHHHHcCCh-------hhHHHHHHhhccCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHH-cCCC
Q 038622 17 KPDVSTFNILIKALCKAHQI-------RPAILMMEEMPGYGLAPDE-RTFTTLMQGLIEEGNLDGALRIREQMVE-HGCL 87 (587)
Q Consensus 17 ~~~~~~~~~l~~~~~~~~~~-------~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~ 87 (587)
.|....++.++.-|...++. ++-+.+++-.... +..+. .-|..++. ++....+|+.+|+..-. ..+-
T Consensus 86 ~p~~y~~~~~~~DYf~lK~s~g~~Lt~~Dli~FL~~~i~~-~~~~k~~~Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii 161 (292)
T PF13929_consen 86 DPQNYSVRRFINDYFLLKKSMGCELTKEDLISFLKLVIIN-LSSNKSFNYWDLVK---RNKIVVEALKLYDGLNPDESII 161 (292)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc-cccccchHHHHHHH---hhHHHHHHHHHhhccCccccee
Confidence 55556666666655443221 2334444443322 11111 11433332 33446677777773222 1234
Q ss_pred CChhhHHHHHHHHHh-cCC-HHHHHHHHHHHHH-CCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCCcccH
Q 038622 88 VTNVTVNVLVHGFCK-EGR-IEDALSFIQEMVS-EGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQE-GFDPDVFTY 163 (587)
Q Consensus 88 ~~~~~~~~l~~~~~~-~~~-~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~ 163 (587)
.++.+...+++.... .+. ...-.++.+-+.. .+..++..+...++..++..+++.+-.+.++..... +...|...|
T Consensus 162 ~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW 241 (292)
T PF13929_consen 162 FDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPW 241 (292)
T ss_pred eChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchH
Confidence 466677777776665 222 2222233333332 234677778888999999999999999999888765 556678899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH-----HhCCCCCChhhHHHHHHHH
Q 038622 164 NSLISGLCKLGEVEEAVEILNQM-----ILRDCSPNTITYNTLISTL 205 (587)
Q Consensus 164 ~~l~~~~~~~g~~~~a~~~~~~~-----~~~~~~~~~~~~~~l~~~~ 205 (587)
...+......|+..-..++.++- .+.+++.+......+-+.+
T Consensus 242 ~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 242 AEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 99999999999988888777653 2335555555555544443
No 418
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=71.88 E-value=81 Score=28.86 Aligned_cols=121 Identities=17% Similarity=0.149 Sum_probs=77.2
Q ss_pred CChHHHHHHHHHHHHcCCCCChHhHHHHHHH-HHh-----cCCHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhCCCC
Q 038622 419 GRVEVASKLLRSIQMKGIVLTPQAYNPVIQA-LFR-----RKRTTEAMRLFREMMEKADPPDAL-TYKHVFRGLCNGGGP 491 (587)
Q Consensus 419 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~-----~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~ 491 (587)
+-++++..++.+....+. |.+......+.+ ... .-+|..-..+|...... .|++. ++|.-+ +..+..+
T Consensus 270 ~lI~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~--apSPvV~LNRAV-Ala~~~G- 344 (415)
T COG4941 270 ALIDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQA--APSPVVTLNRAV-ALAMREG- 344 (415)
T ss_pred HHHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHh--CCCCeEeehHHH-HHHHhhh-
Confidence 446777777877777643 455433333322 222 34677777788777764 44444 344333 4444445
Q ss_pred HHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC
Q 038622 492 IGEAVDFVIEMLERG-FLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS 544 (587)
Q Consensus 492 ~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 544 (587)
.+.+....+.+.+.+ ++.-...+..-+..+.+.|+.++|...|++++...+..
T Consensus 345 p~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~ 398 (415)
T COG4941 345 PAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNA 398 (415)
T ss_pred HHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCCh
Confidence 688888888877542 22234445667888999999999999999999888765
No 419
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=71.62 E-value=92 Score=29.39 Aligned_cols=92 Identities=12% Similarity=0.039 Sum_probs=44.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC---------CCCCCc
Q 038622 92 TVNVLVHGFCKEGRIEDALSFIQEMVSE--GFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQE---------GFDPDV 160 (587)
Q Consensus 92 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~ 160 (587)
.+.-++..|...|+++.|++.|.++..- ........|..++.+-.-.|+|.....+..++.+. .+++..
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 4555666666666666666666654321 00112334555555555556655555554444332 123334
Q ss_pred ccHHHHHHHHHhcCCHHHHHHHHHH
Q 038622 161 FTYNSLISGLCKLGEVEEAVEILNQ 185 (587)
Q Consensus 161 ~~~~~l~~~~~~~g~~~~a~~~~~~ 185 (587)
.++..++....+ ++..|.+.|-.
T Consensus 232 ~C~agLa~L~lk--kyk~aa~~fL~ 254 (466)
T KOG0686|consen 232 KCAAGLANLLLK--KYKSAAKYFLL 254 (466)
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHh
Confidence 444444443333 55555555443
No 420
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=71.27 E-value=58 Score=27.69 Aligned_cols=64 Identities=22% Similarity=0.329 Sum_probs=51.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC
Q 038622 443 YNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPE 510 (587)
Q Consensus 443 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~ 510 (587)
....+..+.+.+..++|+...+.-++.. |.+...-..++..++..|+ |++|...++-+.+ +.|+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGd-w~kAl~Ql~l~a~--l~p~ 67 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGD-WEKALAQLNLAAT--LSPQ 67 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcch-HHHHHHHHHHHhh--cCcc
Confidence 3445667888899999999998888864 6666667778899999999 9999999998887 4564
No 421
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=71.18 E-value=71 Score=27.95 Aligned_cols=59 Identities=19% Similarity=0.161 Sum_probs=33.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH-hcCCHHHHHHHHHHHHH
Q 038622 340 TLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYC-RAGDIKRAADIVQNMTS 398 (587)
Q Consensus 340 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~ 398 (587)
.++....+.++++++...++++...+...+..-.+.+..+|- ..|....+.+++..+..
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 355666677788888888888777655555555555555542 22444455555554443
No 422
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=68.49 E-value=20 Score=31.94 Aligned_cols=53 Identities=19% Similarity=0.118 Sum_probs=38.2
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038622 416 CKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEK 469 (587)
Q Consensus 416 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (587)
.+.|+.++|..+|+.+....+. +++....++......++.-+|-.+|-+++..
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~-~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti 179 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPT-NPQILIEMGQFREMHNEIVEADQCYVKALTI 179 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCC-CHHHHHHHhHHHHhhhhhHhhhhhhheeeee
Confidence 4667888888888887775433 4567777777777777777788888777764
No 423
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=68.01 E-value=90 Score=29.77 Aligned_cols=57 Identities=16% Similarity=0.070 Sum_probs=41.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCcc--hHHHHHHHHH--hcCChHHHHHHHHHHHHc
Q 038622 377 LTYYCRAGDIKRAADIVQNMTSNGCEPDIV--TYGTLIGGLC--KAGRVEVASKLLRSIQMK 434 (587)
Q Consensus 377 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 434 (587)
+..+.+.+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34456889999999999999886 554444 4455555554 567899999999988764
No 424
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=67.64 E-value=14 Score=21.10 Aligned_cols=29 Identities=14% Similarity=0.122 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHccCCHhHHHHHHHHHHhc
Q 038622 512 SSFYMLAEGLVSLGKEETLVELIDMVMDK 540 (587)
Q Consensus 512 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 540 (587)
.++..||.+-...++|++|..-|+++++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 35667788888888888888888777654
No 425
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.26 E-value=30 Score=34.43 Aligned_cols=90 Identities=11% Similarity=0.123 Sum_probs=43.1
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHH------HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHH
Q 038622 450 LFRRKRTTEAMRLFREMMEKADPPDAL------TYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLV 522 (587)
Q Consensus 450 ~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 522 (587)
.++..+|..+++.|...+.. ++.|.. ....+.-+|....+ .|.|.++++++-+ .+| ++-.-..+..+..
T Consensus 364 ~F~~~~Y~~s~~~y~~Sl~~-i~~D~~~~~FaK~qR~l~~CYL~L~Q-LD~A~E~~~EAE~--~d~~~~l~q~~~~~~~~ 439 (872)
T KOG4814|consen 364 LFKMEKYVVSIRFYKLSLKD-IISDNYSDRFAKIQRALQVCYLKLEQ-LDNAVEVYQEAEE--VDRQSPLCQLLMLQSFL 439 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHh-ccchhhhhHHHHHHHHHHHHHhhHHH-HHHHHHHHHHHHh--hccccHHHHHHHHHHHH
Confidence 34455666666666655543 222211 12222223334444 6666666666655 334 3333333444455
Q ss_pred ccCCHhHHHHHHHHHHhcCCC
Q 038622 523 SLGKEETLVELIDMVMDKAKF 543 (587)
Q Consensus 523 ~~g~~~~A~~~~~~~~~~~~~ 543 (587)
..|+-++|............+
T Consensus 440 ~E~~Se~AL~~~~~~~s~~~~ 460 (872)
T KOG4814|consen 440 AEDKSEEALTCLQKIKSSEDE 460 (872)
T ss_pred HhcchHHHHHHHHHHHhhhcc
Confidence 556666666666555544433
No 426
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=65.92 E-value=43 Score=25.42 Aligned_cols=44 Identities=2% Similarity=0.089 Sum_probs=24.0
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038622 74 ALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMV 117 (587)
Q Consensus 74 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 117 (587)
..+-+..+...++-|++.+...-++++.+.+|+..|..+|+-+.
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 33444444444555555555555555556666666666655544
No 427
>PF13934 ELYS: Nuclear pore complex assembly
Probab=64.65 E-value=95 Score=26.96 Aligned_cols=21 Identities=14% Similarity=0.393 Sum_probs=11.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHH
Q 038622 95 VLVHGFCKEGRIEDALSFIQE 115 (587)
Q Consensus 95 ~l~~~~~~~~~~~~a~~~~~~ 115 (587)
.++.++...|+.+.|+.+++.
T Consensus 113 ~Il~~L~~~~~~~lAL~y~~~ 133 (226)
T PF13934_consen 113 KILQALLRRGDPKLALRYLRA 133 (226)
T ss_pred HHHHHHHHCCChhHHHHHHHh
Confidence 344555555555555555544
No 428
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=64.17 E-value=1.1e+02 Score=27.48 Aligned_cols=59 Identities=17% Similarity=0.199 Sum_probs=37.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 038622 443 YNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEML 503 (587)
Q Consensus 443 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~ 503 (587)
+......|...|.+.+|.++.++++..+ |.+...+..+...+...|+ --.|.+.++++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD-~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGD-EISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhcc-chhhhhHHHHHH
Confidence 3445566667777777777777777654 5566666666666777776 555666665544
No 429
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=64.15 E-value=40 Score=32.03 Aligned_cols=28 Identities=11% Similarity=0.324 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 038622 511 FSSFYMLAEGLVSLGKEETLVELIDMVM 538 (587)
Q Consensus 511 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 538 (587)
..+++.+|-+|..+++|.+|++.|...+
T Consensus 164 is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 164 ISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555543
No 430
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=64.11 E-value=57 Score=24.23 Aligned_cols=21 Identities=14% Similarity=0.474 Sum_probs=12.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 038622 448 QALFRRKRTTEAMRLFREMME 468 (587)
Q Consensus 448 ~~~~~~g~~~~A~~~~~~~~~ 468 (587)
..+...|+.-+|+++.++++.
T Consensus 4 ~~~~~rGnhiKAL~iied~i~ 24 (111)
T PF04781_consen 4 KDYFARGNHIKALEIIEDLIS 24 (111)
T ss_pred HHHHHccCHHHHHHHHHHHHH
Confidence 345555666666666666655
No 431
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=63.68 E-value=1e+02 Score=26.99 Aligned_cols=58 Identities=14% Similarity=0.141 Sum_probs=31.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHHH
Q 038622 60 TLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCK-EGRIEDALSFIQEMV 117 (587)
Q Consensus 60 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~ 117 (587)
.+++..-+.|+++++...++++...+...+..-.+.+..+|-. -|....+.+++..+.
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e 64 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIE 64 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHh
Confidence 4455566667777777777777776655565555555555532 244444455444443
No 432
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=63.41 E-value=56 Score=25.92 Aligned_cols=62 Identities=19% Similarity=0.136 Sum_probs=33.2
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcC
Q 038622 7 AHADMVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEG 69 (587)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 69 (587)
+.+.+.+.|++++ ..-..+++.+.+.++.-.|..+++.+.+.+.+-+..+....+..+...|
T Consensus 8 ~~~~lk~~glr~T-~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRLT-PQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCcC-HHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3344445555444 2344556666666666666666666666554444445444555554444
No 433
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.16 E-value=1.7e+02 Score=29.25 Aligned_cols=156 Identities=18% Similarity=0.076 Sum_probs=85.1
Q ss_pred cCChhHHHHHHHHHHHcC-----------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH-------HCCCCCCh----
Q 038622 68 EGNLDGALRIREQMVEHG-----------CLVTNVTVNVLVHGFCKEGRIEDALSFIQEMV-------SEGFNPDQ---- 125 (587)
Q Consensus 68 ~g~~~~A~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~---- 125 (587)
...+++|...|.-+...- .|........+..++..+|+.+-+..++++.+ .-.+.|..
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 345677777777666532 13333445556667777888776666555543 22222211
Q ss_pred --------hh-H---HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHH-hcCCHHHHHHHHHHHHhCC--
Q 038622 126 --------FT-Y---NTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLC-KLGEVEEAVEILNQMILRD-- 190 (587)
Q Consensus 126 --------~~-~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~-- 190 (587)
.. | ...+..+.+.|-+..|.++...+.+..+..|+.....+++.|. +..+|+-.++.++.....+
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l 410 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKL 410 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccH
Confidence 11 1 2233445566778888887777777644445556666666654 5677777777777764432
Q ss_pred -CCCChhhHHHHHHHHhccCC---HHHHHHHHHHHHh
Q 038622 191 -CSPNTITYNTLISTLCKENQ---VEEATELARVLTS 223 (587)
Q Consensus 191 -~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~ 223 (587)
.-|+-..-..++..|..... .+.|...+.++..
T Consensus 411 ~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~ 447 (665)
T KOG2422|consen 411 SQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALK 447 (665)
T ss_pred hhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Confidence 12333333445555554443 3444555544444
No 434
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=63.00 E-value=1.2e+02 Score=27.60 Aligned_cols=18 Identities=22% Similarity=0.608 Sum_probs=8.8
Q ss_pred HhcCChHHHHHHHHHHHh
Q 038622 136 CKVGHVKQALEVMDMMLQ 153 (587)
Q Consensus 136 ~~~~~~~~a~~~~~~~~~ 153 (587)
.+.|+..+|.+.++.+.+
T Consensus 286 RklGrlrEA~K~~RDL~k 303 (556)
T KOG3807|consen 286 RKLGRLREAVKIMRDLMK 303 (556)
T ss_pred HHhhhHHHHHHHHHHHhh
Confidence 344555555555554443
No 435
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.20 E-value=2.3e+02 Score=30.47 Aligned_cols=28 Identities=25% Similarity=0.084 Sum_probs=18.5
Q ss_pred HhHHHHHHHHHccCChHHHHHHHHHHHH
Q 038622 266 FTYNMLIDSLCSRGMLEEALKLLKEMES 293 (587)
Q Consensus 266 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 293 (587)
..|....-.+.+.|+.++|+.++-..+.
T Consensus 685 ~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 685 ELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred hHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 3444445555678888888888776654
No 436
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.71 E-value=1.7e+02 Score=32.09 Aligned_cols=117 Identities=17% Similarity=0.179 Sum_probs=61.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc----ccHH
Q 038622 93 VNVLVHGFCKEGRIEDALSFIQEMVSEGFNPD----QFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDV----FTYN 164 (587)
Q Consensus 93 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~ 164 (587)
|..+++.+-+.+-.+.+.++-..+++. .+++ ..+++.+.+.....|.+-+|.+.+-. .||. .+..
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~------npdserrrdcLR 1058 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIEN-LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILR------NPDSERRRDCLR 1058 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHc------CCcHHHHHHHHH
Confidence 455666677777777777777766664 2322 22456666667777777776655433 2332 2344
Q ss_pred HHHHHHHhcCCHHH------------HHH-HHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHH
Q 038622 165 SLISGLCKLGEVEE------------AVE-ILNQMILRDCSPNTITYNTLISTLCKENQVEEATE 216 (587)
Q Consensus 165 ~l~~~~~~~g~~~~------------a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 216 (587)
.++..++.+|.++. ... +++...+.........|..|-..+...+++.+|-.
T Consensus 1059 qlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaat 1123 (1480)
T KOG4521|consen 1059 QLVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAAT 1123 (1480)
T ss_pred HHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHH
Confidence 55555556665432 223 22222222222233344445555556666666543
No 437
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=61.61 E-value=21 Score=19.44 Aligned_cols=24 Identities=13% Similarity=0.177 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHH
Q 038622 492 IGEAVDFVIEMLERGFLPEFSSFYML 517 (587)
Q Consensus 492 ~~~A~~~~~~~~~~~~~p~~~~~~~l 517 (587)
++.|..+|++.+. +.|++..|...
T Consensus 3 ~dRAR~IyeR~v~--~hp~~k~Wiky 26 (32)
T PF02184_consen 3 FDRARSIYERFVL--VHPEVKNWIKY 26 (32)
T ss_pred HHHHHHHHHHHHH--hCCCchHHHHH
Confidence 4556666666655 34555555433
No 438
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=61.57 E-value=21 Score=23.14 Aligned_cols=29 Identities=31% Similarity=0.421 Sum_probs=14.1
Q ss_pred CHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 038622 510 EFSSFYMLAEGLVSLGKEETLVELIDMVM 538 (587)
Q Consensus 510 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 538 (587)
|.......+..|.+.|++++|.++++.+.
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33334444555555555555555555543
No 439
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=61.51 E-value=45 Score=29.47 Aligned_cols=62 Identities=18% Similarity=0.221 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHH----CC-CCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 038622 91 VTVNVLVHGFCKEGRIEDALSFIQEMVS----EG-FNPDQFTYNTLVNGLCKVGHVKQALEVMDMML 152 (587)
Q Consensus 91 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 152 (587)
.....++..|...|++++|.++|+.+.. .| ..+...+...+..++...|+.+..+.+.-++.
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3344677788888888888888888753 22 13344556677777788888887777655443
No 440
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=61.43 E-value=1.2e+02 Score=27.18 Aligned_cols=63 Identities=16% Similarity=0.171 Sum_probs=35.4
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 038622 367 KPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSN-GCEPDIVTYGTLIGGLCKAGRVEVASKLLR 429 (587)
Q Consensus 367 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 429 (587)
.++..+....+..++..+++..-.++|...... ++..|...|..++......|+..-..++.+
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 344455555566666666666666666655543 334455556666666666666555544443
No 441
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=61.26 E-value=59 Score=28.11 Aligned_cols=34 Identities=6% Similarity=-0.034 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHH---------ccCCHhHHHHHHHHHHhcCCCC
Q 038622 511 FSSFYMLAEGLV---------SLGKEETLVELIDMVMDKAKFS 544 (587)
Q Consensus 511 ~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~~~~~ 544 (587)
...+-.+|..+. ..++...|..+++++.+.+|..
T Consensus 169 AKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~ 211 (230)
T PHA02537 169 AKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC 211 (230)
T ss_pred HHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC
Confidence 345555666663 4567889999999999999874
No 442
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=61.15 E-value=1.3e+02 Score=33.27 Aligned_cols=161 Identities=16% Similarity=0.102 Sum_probs=102.8
Q ss_pred HHHHHhcCCHHHHHH------HHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHc-----CCC--CChHhH
Q 038622 377 LTYYCRAGDIKRAAD------IVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMK-----GIV--LTPQAY 443 (587)
Q Consensus 377 ~~~~~~~~~~~~A~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~--~~~~~~ 443 (587)
.+.....|.+.+|.+ ++......-..+....|..+...+-+.|+.++|+.+-++..-. |.. -+...|
T Consensus 939 gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y 1018 (1236)
T KOG1839|consen 939 GQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAY 1018 (1236)
T ss_pred hhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHh
Confidence 344455566666666 4443322212234567888888999999999998886654321 222 233566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhc-----CC-CCCH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CCC----
Q 038622 444 NPVIQALFRRKRTTEAMRLFREMMEK-----AD-PPDA-LTYKHVFRGLCNGGGPIGEAVDFVIEMLERG---FLP---- 509 (587)
Q Consensus 444 ~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~---~~p---- 509 (587)
..+.......++...|...+.+++.. |. .|.. .....+-..+...+. ++.|+++++.+.... ..|
T Consensus 1019 ~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e-~d~al~~le~A~a~~~~v~g~~~l~ 1097 (1236)
T KOG1839|consen 1019 GNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEE-ADTALRYLESALAKNKKVLGPKELE 1097 (1236)
T ss_pred hHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHH-HHHHHHHHHHHHHHHhhhcCccchh
Confidence 77777777888888899988888763 21 3333 333444433444466 899999999987421 111
Q ss_pred CHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 038622 510 EFSSFYMLAEGLVSLGKEETLVELIDMVM 538 (587)
Q Consensus 510 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 538 (587)
....+..+++....++++..|....+...
T Consensus 1098 ~~~~~~~~a~l~~s~~dfr~al~~ek~t~ 1126 (1236)
T KOG1839|consen 1098 TALSYHALARLFESMKDFRNALEHEKVTY 1126 (1236)
T ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHhhHH
Confidence 35566778888888898888887776544
No 443
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.76 E-value=2.2e+02 Score=29.73 Aligned_cols=102 Identities=15% Similarity=0.195 Sum_probs=64.0
Q ss_pred HHHHHHcCChhhHHHHHHhhccCCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 038622 27 IKALCKAHQIRPAILMMEEMPGYGLAP---DERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKE 103 (587)
Q Consensus 27 ~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 103 (587)
++-+.+.+.+++|....+.-... .+ -...+..++..+...|++++|-...-.|... +...|...+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 45578889999998887766543 33 3456777888888899999998888887753 445565555555555
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 038622 104 GRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCK 137 (587)
Q Consensus 104 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 137 (587)
++......++ .......+...|..++..+..
T Consensus 437 ~~l~~Ia~~l---Pt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAPYL---PTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhccC---CCCCcccCchHHHHHHHHHHH
Confidence 5544333322 221111234566666666655
No 444
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.40 E-value=2.4e+02 Score=30.25 Aligned_cols=27 Identities=11% Similarity=0.244 Sum_probs=16.5
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHhhcc
Q 038622 22 TFNILIKALCKAHQIRPAILMMEEMPG 48 (587)
Q Consensus 22 ~~~~l~~~~~~~~~~~~A~~~~~~~~~ 48 (587)
-|..|+..|...|+.++|.+++.+...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 455666666666666666666666554
No 445
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=60.30 E-value=72 Score=24.08 Aligned_cols=86 Identities=17% Similarity=0.211 Sum_probs=54.0
Q ss_pred HhCCCCHHHHHHHHHHHHH--cCCCCC---------HHHHHHHHHHHHccCCHhHHHHHHHHHHh----cCC-CCCchhh
Q 038622 486 CNGGGPIGEAVDFVIEMLE--RGFLPE---------FSSFYMLAEGLVSLGKEETLVELIDMVMD----KAK-FSDRETS 549 (587)
Q Consensus 486 ~~~~~~~~~A~~~~~~~~~--~~~~p~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~-~~~~~~~ 549 (587)
...|- +++|..-++++.+ ..++|. ...+..|..++...|+|++++...++++. .+. ..+....
T Consensus 20 l~~g~-~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGkl 98 (144)
T PF12968_consen 20 LQDGA-YEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKL 98 (144)
T ss_dssp HHHT--HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHH
T ss_pred HHhhh-HHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchh
Confidence 34566 8888888888763 334442 22445788899999999999888877763 222 2344444
Q ss_pred hhhh-------HHHHHHHHHHHHhcchhhh
Q 038622 550 MVRG-------FLKIRKFQDALATFGDILD 572 (587)
Q Consensus 550 ~~~~-------~~~~~~~~~A~~~~~~~~~ 572 (587)
||.+ +-..|..++|++.|+..-+
T Consensus 99 WIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 99 WIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 4433 4457889999999887654
No 446
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=60.17 E-value=17 Score=23.63 Aligned_cols=29 Identities=17% Similarity=0.280 Sum_probs=13.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 038622 54 DERTFTTLMQGLIEEGNLDGALRIREQMV 82 (587)
Q Consensus 54 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 82 (587)
|-.-...++.++...|++++|.++.+.+.
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 33334444455555555555555444443
No 447
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=59.91 E-value=38 Score=30.28 Aligned_cols=66 Identities=17% Similarity=0.104 Sum_probs=46.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHH
Q 038622 448 QALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYML 517 (587)
Q Consensus 448 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l 517 (587)
.-..+.|+.++|.++|+.++... |.++..+..++...-...+ .-+|-.+|-+++. ++| +.+++..-
T Consensus 124 ~~~~~~Gk~ekA~~lfeHAlala-P~~p~~L~e~G~f~E~~~~-iv~ADq~Y~~ALt--isP~nseALvnR 190 (472)
T KOG3824|consen 124 GRSRKDGKLEKAMTLFEHALALA-PTNPQILIEMGQFREMHNE-IVEADQCYVKALT--ISPGNSEALVNR 190 (472)
T ss_pred HHHHhccchHHHHHHHHHHHhcC-CCCHHHHHHHhHHHHhhhh-hHhhhhhhheeee--eCCCchHHHhhh
Confidence 33456788888888888888864 5566666666665555555 8888888888887 567 55555443
No 448
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.56 E-value=1.6e+02 Score=27.89 Aligned_cols=62 Identities=10% Similarity=0.002 Sum_probs=33.4
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHhCC--CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038622 197 TYNTLISTLCKENQVEEATELARVLTSKG--ILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKT 258 (587)
Q Consensus 197 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 258 (587)
.+..++.-|...|+++.|++.|.+..+.- ...-...|..++..-.-.|+|.....+..+..+
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 45556666666777777777666644321 011233444555555556666655555554443
No 449
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=59.26 E-value=1.6e+02 Score=27.85 Aligned_cols=138 Identities=14% Similarity=0.100 Sum_probs=77.2
Q ss_pred HhhHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCcc--------hHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCC
Q 038622 370 KFTYNSLLTY--YCRAGDIKRAADIVQNMTSNGCEPDIV--------TYGTLIGGLCKAGRVEVASKLLRSIQMK-GIVL 438 (587)
Q Consensus 370 ~~~~~~l~~~--~~~~~~~~~A~~~~~~~~~~~~~~~~~--------~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~ 438 (587)
...|..++.. ...+.++.+|..+-+.....-..-+.. +|..+..+|...|+...-..++...... .+.-
T Consensus 124 i~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrh 203 (493)
T KOG2581|consen 124 IEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRH 203 (493)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcC
Confidence 4444444333 344577888888777655431111322 3444445566677777766666655443 1221
Q ss_pred C----hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC
Q 038622 439 T----PQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDA---LTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPE 510 (587)
Q Consensus 439 ~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~ 510 (587)
+ ....|.+++.|...+.++.|..+..+..--.-..+. ..+..++..-..+++ +..|.+++-.++.+ .|.
T Consensus 204 d~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqld-YssA~~~~~qa~rk--apq 279 (493)
T KOG2581|consen 204 DEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLD-YSSALEYFLQALRK--APQ 279 (493)
T ss_pred cchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcc-hhHHHHHHHHHHHh--Ccc
Confidence 2 234567778888888888888877766521001111 112233444455666 88888888888873 454
No 450
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=59.07 E-value=49 Score=29.23 Aligned_cols=62 Identities=11% Similarity=0.009 Sum_probs=46.5
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCC
Q 038622 481 VFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSD 545 (587)
Q Consensus 481 l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 545 (587)
+-..+.+.++ ++.|....++.+. +.| ++.-+.--|-+|.+.|.+.-|+.-+....+.-|+..
T Consensus 187 lk~~~~~e~~-~~~al~~~~r~l~--l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~ 249 (269)
T COG2912 187 LKAALLRELQ-WELALRVAERLLD--LNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDP 249 (269)
T ss_pred HHHHHHHhhc-hHHHHHHHHHHHh--hCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCch
Confidence 3344566677 8888888888887 445 677777778888888888888888888888877654
No 451
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=58.68 E-value=1.2e+02 Score=26.26 Aligned_cols=14 Identities=7% Similarity=0.145 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHc
Q 038622 492 IGEAVDFVIEMLER 505 (587)
Q Consensus 492 ~~~A~~~~~~~~~~ 505 (587)
...|..+++++.+.
T Consensus 194 l~~Al~~L~rA~~l 207 (230)
T PHA02537 194 LQLALALLQRAFQL 207 (230)
T ss_pred HHHHHHHHHHHHHh
Confidence 67788888888773
No 452
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=58.37 E-value=2.2e+02 Score=29.12 Aligned_cols=62 Identities=16% Similarity=0.197 Sum_probs=22.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038622 334 NSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMT 397 (587)
Q Consensus 334 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 397 (587)
+......++..|.+.|-.+.|..+.+.+-..-. ...-|...+..+.+.|+......+...+.
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334445555666666666666666655443211 12234444455566666665555555444
No 453
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=58.35 E-value=40 Score=30.28 Aligned_cols=79 Identities=5% Similarity=-0.059 Sum_probs=57.9
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHH-HHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHH
Q 038622 86 CLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNT-LVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYN 164 (587)
Q Consensus 86 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 164 (587)
.+.++..|...+.-..+.+.+.+...++.++++.. |.++..|-. -..-+...++++.++.+|...++.+.. ++..|.
T Consensus 103 ff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~kh-P~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~-~p~iw~ 180 (435)
T COG5191 103 FFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKH-PLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR-SPRIWI 180 (435)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC-CchHHH
Confidence 36677888888777778888999999999998873 666766654 344556778999999999998886422 445554
Q ss_pred HH
Q 038622 165 SL 166 (587)
Q Consensus 165 ~l 166 (587)
..
T Consensus 181 ey 182 (435)
T COG5191 181 EY 182 (435)
T ss_pred HH
Confidence 43
No 454
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=58.10 E-value=1.1e+02 Score=33.71 Aligned_cols=126 Identities=13% Similarity=0.082 Sum_probs=59.8
Q ss_pred HHHHHcCChhhHHH------HHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-------cCCCCChhhHH
Q 038622 28 KALCKAHQIRPAIL------MMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVE-------HGCLVTNVTVN 94 (587)
Q Consensus 28 ~~~~~~~~~~~A~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~ 94 (587)
......|.+.++.+ ++......-.+.....|..+...+-+.|+.++|+..-..+.- .+.+.+...+.
T Consensus 940 q~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~ 1019 (1236)
T KOG1839|consen 940 QEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYG 1019 (1236)
T ss_pred hhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhh
Confidence 33444555555544 444333222244455666666777777777777665444321 12222333344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 038622 95 VLVHGFCKEGRIEDALSFIQEMVSE-------GFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQ 153 (587)
Q Consensus 95 ~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 153 (587)
.+.......+....|...+.+.... ..||...++..+-..+...++++.|+++.+.+..
T Consensus 1020 nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1020 NLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred HHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4444444444555555555444331 1233333344444444444555555555555544
No 455
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=57.32 E-value=85 Score=23.97 Aligned_cols=33 Identities=18% Similarity=0.343 Sum_probs=15.2
Q ss_pred CCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038622 435 GIVLTPQAYNPVIQALFRRKRTTEAMRLFREMM 467 (587)
Q Consensus 435 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 467 (587)
++.|++.....-++++.+.+++..|.++|+-..
T Consensus 79 DlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 79 DLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred ccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 344444444444444444444444444444443
No 456
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=56.36 E-value=28 Score=18.17 Aligned_cols=13 Identities=31% Similarity=0.498 Sum_probs=5.4
Q ss_pred hhHHHHHHHHHHH
Q 038622 71 LDGALRIREQMVE 83 (587)
Q Consensus 71 ~~~A~~~~~~~~~ 83 (587)
.+.|..+|++++.
T Consensus 3 ~~~~r~i~e~~l~ 15 (33)
T smart00386 3 IERARKIYERALE 15 (33)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 457
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=55.87 E-value=1.5e+02 Score=26.28 Aligned_cols=225 Identities=14% Similarity=0.104 Sum_probs=129.2
Q ss_pred HHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH-
Q 038622 30 LCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIE-EGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIE- 107 (587)
Q Consensus 30 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~- 107 (587)
+.+.....+|.++-++++..+ |.+-.+|.---..+-. ..+..+-++.++++.+.+ |.+-.+|..--...-..|++.
T Consensus 53 ~~~~E~S~RAl~LT~d~i~lN-pAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~n-pKNYQvWHHRr~ive~l~d~s~ 130 (318)
T KOG0530|consen 53 IAKNEKSPRALQLTEDAIRLN-PANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDN-PKNYQVWHHRRVIVELLGDPSF 130 (318)
T ss_pred HhccccCHHHHHHHHHHHHhC-cccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHhcCccc
Confidence 455667788899998888776 5555555433332222 234777788888888775 556677765555555666776
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh-cCC-----HHHHHH
Q 038622 108 DALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCK-LGE-----VEEAVE 181 (587)
Q Consensus 108 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~-----~~~a~~ 181 (587)
.-+++...|+..+ ..+-.+|..---++...+.++.-+.+..++++..+. +-.+|+.-.-.... .|- .+.-+.
T Consensus 131 rELef~~~~l~~D-aKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~-NNSAWN~Ryfvi~~~~~~~~~~~le~El~ 208 (318)
T KOG0530|consen 131 RELEFTKLMLDDD-AKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIR-NNSAWNQRYFVITNTKGVISKAELERELN 208 (318)
T ss_pred chHHHHHHHHhcc-ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhh-ccchhheeeEEEEeccCCccHHHHHHHHH
Confidence 6777778887753 445566666666666777888888888888876544 33344322111111 121 222233
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHhc-cC--CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHH------hcCChH---HH
Q 038622 182 ILNQMILRDCSPNTITYNTLISTLCK-EN--QVEEATELARVLTSKGILPDVCTFNSLIQGLC------LTSNFD---VA 249 (587)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~l~~~~~~-~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~---~a 249 (587)
.....+.. +|.+..+|+-|...+.. .| ...+.......+...-....+.....++..+. ..+.-+ +|
T Consensus 209 yt~~~I~~-vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~~~e~~l~~~~~~~~~a~~a 287 (318)
T KOG0530|consen 209 YTKDKILL-VPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLDLYAEDALAYKSSAEELARKA 287 (318)
T ss_pred HHHHHHHh-CCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHHHHHHHHHHHHHhhccccchHHHHHH
Confidence 44444443 36677788877766664 44 23444555444432111224444555555441 223333 57
Q ss_pred HHHHHHHHHc
Q 038622 250 MELFQEMKTK 259 (587)
Q Consensus 250 ~~~~~~~~~~ 259 (587)
..+++.+...
T Consensus 288 ~~ly~~La~~ 297 (318)
T KOG0530|consen 288 VKLYEDLAIK 297 (318)
T ss_pred HHHHHHHhhc
Confidence 7778877633
No 458
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=55.79 E-value=84 Score=27.76 Aligned_cols=54 Identities=15% Similarity=0.148 Sum_probs=27.5
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHccCCHhHHHHHH
Q 038622 480 HVFRGLCNGGGPIGEAVDFVIEMLER----GFL-PEFSSFYMLAEGLVSLGKEETLVELI 534 (587)
Q Consensus 480 ~l~~~~~~~~~~~~~A~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~ 534 (587)
.++..+...|+ +++|.++++.+... |.. +...+...+..++.+.|+.++.+.+.
T Consensus 183 ~~A~ey~~~g~-~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 183 EMAEEYFRLGD-YDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHCCC-HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 44455556665 66666666665421 111 12344455555666666665555443
No 459
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=55.03 E-value=83 Score=23.20 Aligned_cols=81 Identities=17% Similarity=0.104 Sum_probs=35.5
Q ss_pred cCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 038622 33 AHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSF 112 (587)
Q Consensus 33 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 112 (587)
....++|..+.+.+...+ .....+-...+..+..+|+|++| +...... ..|+...|. +-+-.+.|--+++...
T Consensus 19 ~HcH~EA~tIa~wL~~~~-~~~E~v~lIr~~sLmNrG~Yq~A---Ll~~~~~-~~pdL~p~~--AL~a~klGL~~~~e~~ 91 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEG-EMEEVVALIRLSSLMNRGDYQEA---LLLPQCH-CYPDLEPWA--ALCAWKLGLASALESR 91 (116)
T ss_dssp TT-HHHHHHHHHHHHHTT-TTHHHHHHHHHHHHHHTT-HHHH---HHHHTTS---GGGHHHH--HHHHHHCT-HHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHH---HHhcccC-CCccHHHHH--HHHHHhhccHHHHHHH
Confidence 344566666666666543 11222222333445566666666 1122211 123333332 2334566666666666
Q ss_pred HHHHHHCC
Q 038622 113 IQEMVSEG 120 (587)
Q Consensus 113 ~~~~~~~~ 120 (587)
+.++...|
T Consensus 92 l~rla~~g 99 (116)
T PF09477_consen 92 LTRLASSG 99 (116)
T ss_dssp HHHHCT-S
T ss_pred HHHHHhCC
Confidence 66555443
No 460
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.70 E-value=79 Score=22.81 Aligned_cols=53 Identities=13% Similarity=0.035 Sum_probs=28.0
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 038622 75 LRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYN 129 (587)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 129 (587)
.+.++++...+.+..+-....|...|++.|+.+.|.+-|+.-... -|...+|.
T Consensus 57 e~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKal--FPES~~fm 109 (121)
T COG4259 57 EKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKAL--FPESGVFM 109 (121)
T ss_pred HHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhh--CccchhHH
Confidence 344555555544444455555666666666666666666554432 34444433
No 461
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=54.47 E-value=59 Score=30.58 Aligned_cols=60 Identities=20% Similarity=0.127 Sum_probs=27.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 038622 373 YNSLLTYYCRAGDIKRAADIVQNMTSN--GCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQ 432 (587)
Q Consensus 373 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 432 (587)
+..|++.+.-.||++...+.++.+... |..|....-..++.+|.-.+++.+|.+.|-.++
T Consensus 238 L~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niL 299 (525)
T KOG3677|consen 238 LLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNIL 299 (525)
T ss_pred HHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555544444444443332 222332222444555555555555555555444
No 462
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=54.40 E-value=71 Score=26.86 Aligned_cols=34 Identities=18% Similarity=0.070 Sum_probs=21.6
Q ss_pred CCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038622 436 IVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEK 469 (587)
Q Consensus 436 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (587)
..|++..+..++.++...|+.++|.+...++...
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~l 173 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARRL 173 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3456666666666666666666666666666653
No 463
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=54.24 E-value=1.3e+02 Score=24.99 Aligned_cols=20 Identities=25% Similarity=0.341 Sum_probs=9.9
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 038622 169 GLCKLGEVEEAVEILNQMIL 188 (587)
Q Consensus 169 ~~~~~g~~~~a~~~~~~~~~ 188 (587)
.|.+.|.+++|.+++++...
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc
Confidence 34445555555555555444
No 464
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=53.99 E-value=2.6e+02 Score=28.61 Aligned_cols=61 Identities=11% Similarity=0.107 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038622 300 VVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMI 362 (587)
Q Consensus 300 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 362 (587)
......++..|.+.|-.+.+.++.+.+...- ....-|..-+..+.+.|+......+...+.
T Consensus 405 ~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~--~~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 405 NDDAEKLLEICAELGLEDVAREICKILGQRL--LKEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHH--HHHHHHHHHHHHHH----------------
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344555555566666666666655543321 112234444445556666555555544444
No 465
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.05 E-value=84 Score=22.67 Aligned_cols=47 Identities=17% Similarity=0.099 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038622 423 VASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEK 469 (587)
Q Consensus 423 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (587)
.-.+.++++..++....+.....++..|.+.|+.+.|.+-|+.-...
T Consensus 55 ~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKal 101 (121)
T COG4259 55 ALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKAL 101 (121)
T ss_pred HHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhh
Confidence 33455666666654444555566777778888888888777765553
No 466
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=50.56 E-value=17 Score=27.84 Aligned_cols=32 Identities=25% Similarity=0.510 Sum_probs=20.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 038622 100 FCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVN 133 (587)
Q Consensus 100 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 133 (587)
....|.-.+|..+|++|+..|.+||. |+.|+.
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~ 136 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLK 136 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHH
Confidence 34455666777777777777766663 555554
No 467
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=50.17 E-value=95 Score=24.63 Aligned_cols=46 Identities=17% Similarity=0.094 Sum_probs=25.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC
Q 038622 129 NTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLG 174 (587)
Q Consensus 129 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 174 (587)
..++..+...++.-.|.++++.+.+.++..+..|.+..+..+...|
T Consensus 24 ~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 24 LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 4455555555555666666666666554444445444444444444
No 468
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=49.43 E-value=21 Score=24.22 Aligned_cols=34 Identities=18% Similarity=0.246 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcC
Q 038622 492 IGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKA 541 (587)
Q Consensus 492 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 541 (587)
.++|+.+++++++. -..|++++|+.+|..+++.-
T Consensus 3 l~kai~Lv~~A~~e----------------D~~gny~eA~~lY~~ale~~ 36 (75)
T cd02680 3 LERAHFLVTQAFDE----------------DEKGNAEEAIELYTEAVELC 36 (75)
T ss_pred HHHHHHHHHHHHHh----------------hHhhhHHHHHHHHHHHHHHH
Confidence 56777777777652 35799999999999887644
No 469
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.45 E-value=2.3e+02 Score=28.85 Aligned_cols=124 Identities=11% Similarity=0.073 Sum_probs=80.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCh------HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038622 412 IGGLCKAGRVEVASKLLRSIQMKGIVLTP------QAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGL 485 (587)
Q Consensus 412 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 485 (587)
+.-..+..++..+.++|..-... +..|. .....+..+|....+.+.|.++++++.+.+ +.+..+-.....+.
T Consensus 361 A~~~F~~~~Y~~s~~~y~~Sl~~-i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d-~~~~l~q~~~~~~~ 438 (872)
T KOG4814|consen 361 AKKLFKMEKYVVSIRFYKLSLKD-IISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD-RQSPLCQLLMLQSF 438 (872)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHh-ccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-cccHHHHHHHHHHH
Confidence 33455677899999988876664 22121 234567788889999999999999999875 55666666677777
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCC
Q 038622 486 CNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAK 542 (587)
Q Consensus 486 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 542 (587)
...|+ -++|...+......-.+...+... .-...|.+..-..++..+.-.+.
T Consensus 439 ~~E~~-Se~AL~~~~~~~s~~~~~~~~~~~----l~~~~~~PTt~lsv~~~l~~~n~ 490 (872)
T KOG4814|consen 439 LAEDK-SEEALTCLQKIKSSEDEKSTDALI----LAVAECKPTTDLSVQGLLMIFNS 490 (872)
T ss_pred HHhcc-hHHHHHHHHHHHhhhcccccchhH----HHHhcCCCchHHHHHHHHHHHhc
Confidence 78888 899999988877532222222221 12234555555555555544333
No 470
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=48.43 E-value=1.1e+02 Score=29.38 Aligned_cols=101 Identities=12% Similarity=0.137 Sum_probs=61.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-------cCCCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH--
Q 038622 53 PDERTFTTLMQGLIEEGNLDGALRIREQMVE-------HGCLV-----TNVTVNVLVHGFCKEGRIEDALSFIQEMVS-- 118 (587)
Q Consensus 53 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-- 118 (587)
.+...-..++..+....+..+-++..+.... .|..+ .-.....|++.++-.||+..|+++++.+.-
T Consensus 73 W~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~ 152 (404)
T PF10255_consen 73 WNVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNK 152 (404)
T ss_pred ccHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCccc
Confidence 3444445555566666666555554444211 11010 012345577788888999999988876521
Q ss_pred C----CC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 038622 119 E----GF-NPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQ 153 (587)
Q Consensus 119 ~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 153 (587)
. .+ .-...++..++-+|.-.+++.+|.+.|...+.
T Consensus 153 ~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 153 KGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred chhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 12 22355678888889999999999999988765
No 471
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=47.81 E-value=59 Score=21.56 Aligned_cols=15 Identities=27% Similarity=0.297 Sum_probs=7.1
Q ss_pred ccCCHhHHHHHHHHH
Q 038622 523 SLGKEETLVELIDMV 537 (587)
Q Consensus 523 ~~g~~~~A~~~~~~~ 537 (587)
+.|++++|+..|.++
T Consensus 17 ~~g~~~~A~~~Y~~a 31 (69)
T PF04212_consen 17 EAGNYEEALELYKEA 31 (69)
T ss_dssp HTTSHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHH
Confidence 344555554444443
No 472
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=47.68 E-value=24 Score=23.21 Aligned_cols=50 Identities=22% Similarity=0.288 Sum_probs=31.0
Q ss_pred CCHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhc
Q 038622 18 PDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEE 68 (587)
Q Consensus 18 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 68 (587)
|....++.++..+.+..-.+.++..+.++.+.| .-+...|..-++.+++.
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~LaRe 55 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSLARE 55 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 445566677777777666777777777776666 45566666666655543
No 473
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=47.68 E-value=1.3e+02 Score=23.17 Aligned_cols=44 Identities=14% Similarity=0.135 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHccCCHhHHHHHHHH
Q 038622 493 GEAVDFVIEMLERGFLPE-FSSFYMLAEGLVSLGKEETLVELIDM 536 (587)
Q Consensus 493 ~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 536 (587)
+++.++|.-|...++... ...|...+..+...|++.+|.++|+.
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 346778888887776664 55566788888888899888888764
No 474
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=46.91 E-value=56 Score=22.36 Aligned_cols=18 Identities=11% Similarity=-0.099 Sum_probs=9.4
Q ss_pred HHccCCHhHHHHHHHHHH
Q 038622 521 LVSLGKEETLVELIDMVM 538 (587)
Q Consensus 521 ~~~~g~~~~A~~~~~~~~ 538 (587)
+-+.|++++|+.+|..++
T Consensus 16 ~D~~g~y~eA~~~Y~~ai 33 (76)
T cd02681 16 RDQEGRYSEAVFYYKEAA 33 (76)
T ss_pred HHHccCHHHHHHHHHHHH
Confidence 344555555555555544
No 475
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=44.34 E-value=51 Score=29.16 Aligned_cols=64 Identities=9% Similarity=0.021 Sum_probs=53.9
Q ss_pred HHHHHHHccCCHhHHHHHHHHHHhcCCCCC-chhhhhhhHHHHHHHHHHHHhcchhhhccCchhh
Q 038622 516 MLAEGLVSLGKEETLVELIDMVMDKAKFSD-RETSMVRGFLKIRKFQDALATFGDILDSRMPRKT 579 (587)
Q Consensus 516 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 579 (587)
.+=..+...++++.|....++.+..+|... .+..-+.+|.+.|.+..|+..+..+.+.-+.+..
T Consensus 186 ~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~ 250 (269)
T COG2912 186 NLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPI 250 (269)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchH
Confidence 344567889999999999999999999874 4788888899999999999999998887766554
No 476
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.33 E-value=4.2e+02 Score=28.25 Aligned_cols=71 Identities=11% Similarity=0.173 Sum_probs=42.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 038622 60 TLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVG 139 (587)
Q Consensus 60 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 139 (587)
.+-+.|.+.|+|+.|+++...-. ..-..++..-+..+.+.+++..|.+++.++.+ .+..+.--+....
T Consensus 363 ~vWk~yLd~g~y~kAL~~ar~~p----~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~--------~FEEVaLKFl~~~ 430 (911)
T KOG2034|consen 363 DVWKTYLDKGEFDKALEIARTRP----DALETVLLKQADFLFQDKEYLRAAEIYAETLS--------SFEEVALKFLEIN 430 (911)
T ss_pred HHHHHHHhcchHHHHHHhccCCH----HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh--------hHHHHHHHHHhcC
Confidence 34466778888888877643220 11123344555677788888888888877633 3444454555555
Q ss_pred ChH
Q 038622 140 HVK 142 (587)
Q Consensus 140 ~~~ 142 (587)
+.+
T Consensus 431 ~~~ 433 (911)
T KOG2034|consen 431 QER 433 (911)
T ss_pred CHH
Confidence 555
No 477
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=44.30 E-value=37 Score=30.47 Aligned_cols=42 Identities=17% Similarity=0.376 Sum_probs=25.4
Q ss_pred CCCHHHH-HHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhH
Q 038622 52 APDERTF-TTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTV 93 (587)
Q Consensus 52 ~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 93 (587)
.++.+.| +..+....+.||+++|+.+++++.+.|...-..++
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 3454443 35666666777777777777777777654433333
No 478
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=44.12 E-value=54 Score=29.51 Aligned_cols=38 Identities=21% Similarity=0.323 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH
Q 038622 91 VTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTY 128 (587)
Q Consensus 91 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 128 (587)
..|+..|....+.||+++|+.+++++.+.|...-..+|
T Consensus 258 ~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 258 SYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 34567778888888888888888888887755433343
No 479
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=43.11 E-value=1.6e+02 Score=22.94 Aligned_cols=21 Identities=19% Similarity=0.222 Sum_probs=12.6
Q ss_pred HHhcCCHHHHHHHHHHHHhcC
Q 038622 450 LFRRKRTTEAMRLFREMMEKA 470 (587)
Q Consensus 450 ~~~~g~~~~A~~~~~~~~~~~ 470 (587)
+...|+++.|+.+.+-++++|
T Consensus 58 ~~D~Gd~~~AL~~a~yAi~~~ 78 (132)
T PF05944_consen 58 LFDVGDFDGALDIAEYAIEHG 78 (132)
T ss_pred hhcccCHHHHHHHHHHHHHcC
Confidence 445566666666666666654
No 480
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=42.92 E-value=2e+02 Score=23.95 Aligned_cols=22 Identities=5% Similarity=0.221 Sum_probs=15.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh
Q 038622 447 IQALFRRKRTTEAMRLFREMME 468 (587)
Q Consensus 447 ~~~~~~~g~~~~A~~~~~~~~~ 468 (587)
+..|.+.|.+++|.+++++...
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHhc
Confidence 3456677777777777777765
No 481
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=42.07 E-value=1.4e+02 Score=21.87 Aligned_cols=79 Identities=15% Similarity=0.163 Sum_probs=35.2
Q ss_pred ChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 038622 35 QIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQ 114 (587)
Q Consensus 35 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 114 (587)
..++|..+-+.+...+ .....+-..-+..+..+|+|++|..+.+.. ..|+...|..| +-.+.|-.++....+.
T Consensus 20 cHqEA~tIAdwL~~~~-~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~AL--ce~rlGl~s~l~~rl~ 92 (115)
T TIGR02508 20 CHQEANTIADWLHLKG-ESEEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLAL--CEWRLGLGSALESRLN 92 (115)
T ss_pred HHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHH--HHHhhccHHHHHHHHH
Confidence 3455555555554332 111111222233445666666666554433 13333334332 2345555555555555
Q ss_pred HHHHCC
Q 038622 115 EMVSEG 120 (587)
Q Consensus 115 ~~~~~~ 120 (587)
++...|
T Consensus 93 rla~sg 98 (115)
T TIGR02508 93 RLAASG 98 (115)
T ss_pred HHHhCC
Confidence 555544
No 482
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=41.19 E-value=1.6e+02 Score=22.59 Aligned_cols=43 Identities=14% Similarity=0.027 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 038622 73 GALRIREQMVEHGCLV-TNVTVNVLVHGFCKEGRIEDALSFIQE 115 (587)
Q Consensus 73 ~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 115 (587)
.+..+|+.|...++-. ....|...+..+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 5555555555544322 223344444455555555555555543
No 483
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=38.42 E-value=2.2e+02 Score=23.36 Aligned_cols=39 Identities=13% Similarity=-0.018 Sum_probs=20.0
Q ss_pred hcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 038622 67 EEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGR 105 (587)
Q Consensus 67 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 105 (587)
..++.-.|.++++.+.+.++..+..+.+.-+..+...|-
T Consensus 37 ~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 37 LQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred hcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 334444555555555555544444554455555555543
No 484
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=37.82 E-value=91 Score=21.56 Aligned_cols=32 Identities=13% Similarity=0.115 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 038622 492 IGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMD 539 (587)
Q Consensus 492 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 539 (587)
++.|.+.+++++.. -..|+.++|+.+|++.+.
T Consensus 5 ~~~A~~~I~kaL~~----------------dE~g~~e~Al~~Y~~gi~ 36 (79)
T cd02679 5 YKQAFEEISKALRA----------------DEWGDKEQALAHYRKGLR 36 (79)
T ss_pred HHHHHHHHHHHhhh----------------hhcCCHHHHHHHHHHHHH
Confidence 56677777766642 233566666666665543
No 485
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=37.67 E-value=1.4e+02 Score=29.34 Aligned_cols=89 Identities=10% Similarity=0.007 Sum_probs=57.3
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHccCCHhHHH
Q 038622 454 KRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLER-GFLP-EFSSFYMLAEGLVSLGKEETLV 531 (587)
Q Consensus 454 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~ 531 (587)
+.+..|+..|.+.... .+.....+...+.++.+.+- ...+...++..... .+.| ...++..|++++...+++.+|+
T Consensus 388 ~~~~~~i~~~s~a~q~-~~~~~~~l~nraa~lmkRkW-~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal 465 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQY-VPDAIYLLENRAAALMKRKW-RGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEAL 465 (758)
T ss_pred HHHHHHHHHHHHHhhh-ccchhHHHHhHHHHHHhhhc-cccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhh
Confidence 3456677777777765 24455556666666665544 23333333333321 1344 3667788999999999999999
Q ss_pred HHHHHHHhcCCCC
Q 038622 532 ELIDMVMDKAKFS 544 (587)
Q Consensus 532 ~~~~~~~~~~~~~ 544 (587)
+....+....|.+
T Consensus 466 ~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 466 SCHWALQMSFPTD 478 (758)
T ss_pred hhHHHHhhcCchh
Confidence 9988888888743
No 486
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=37.61 E-value=3e+02 Score=25.64 Aligned_cols=63 Identities=19% Similarity=0.289 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhCCCCCCc----ccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHh
Q 038622 142 KQALEVMDMMLQEGFDPDV----FTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLC 206 (587)
Q Consensus 142 ~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 206 (587)
+++..++..++.. -|++ ..|..++......|.++..+.+|++++..|..|-......++.++-
T Consensus 120 eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieElR~~l~diL~ 186 (353)
T PF15297_consen 120 EEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEELRHVLVDILK 186 (353)
T ss_pred HHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 3555555555543 2332 3455556666666666677777777766666655555554544433
No 487
>PF05944 Phage_term_smal: Phage small terminase subunit; InterPro: IPR010270 This entry is represented by Bacteriophage P2, GpM. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several phage small terminase subunit proteins as well as some related bacterial sequences []. M protein is probably an endonuclease which directs cos cleavage. The Q, P and M proteins are needed to package DNA into proheads and for the conversion of proheads to capsids.; GO: 0003677 DNA binding, 0004519 endonuclease activity, 0019069 viral capsid assembly
Probab=37.38 E-value=2e+02 Score=22.42 Aligned_cols=30 Identities=17% Similarity=0.268 Sum_probs=18.9
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 038622 162 TYNSLISGLCKLGEVEEAVEILNQMILRDC 191 (587)
Q Consensus 162 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 191 (587)
++..++-.....|+++.|+++.+.++.+|.
T Consensus 50 Vl~~~mvW~~D~Gd~~~AL~~a~yAi~~~l 79 (132)
T PF05944_consen 50 VLMTVMVWLFDVGDFDGALDIAEYAIEHGL 79 (132)
T ss_pred hHHhhHhhhhcccCHHHHHHHHHHHHHcCC
Confidence 444555566666777777777777666653
No 488
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=36.08 E-value=3.6e+02 Score=25.02 Aligned_cols=116 Identities=10% Similarity=0.106 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHH------hcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHH
Q 038622 351 VEDAAQLMDQMIMEGLKPDKFTYNSLLTYYC------RAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVA 424 (587)
Q Consensus 351 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 424 (587)
.+++..+++++...+. |.+......+.++- ..-||.....+|+.+......| .+-.+-.-+.....-++.+
T Consensus 272 I~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSP--vV~LNRAVAla~~~Gp~ag 348 (415)
T COG4941 272 IDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSP--VVTLNRAVALAMREGPAAG 348 (415)
T ss_pred HHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCC--eEeehHHHHHHHhhhHHhH
Confidence 4556666777666643 66666555554432 1235666666666666543333 2222223333444455666
Q ss_pred HHHHHHHHHcC-CCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038622 425 SKLLRSIQMKG-IVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEK 469 (587)
Q Consensus 425 ~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (587)
+.+.+.+...+ ..-....+..-+..+.+.|+.++|...|++++..
T Consensus 349 La~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~L 394 (415)
T COG4941 349 LAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIAL 394 (415)
T ss_pred HHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHh
Confidence 66666655541 1111123334455666777777777777777764
No 489
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=35.95 E-value=2.1e+02 Score=22.57 Aligned_cols=48 Identities=10% Similarity=0.081 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCc-hhhhhhhHHHHH
Q 038622 511 FSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDR-ETSMVRGFLKIR 558 (587)
Q Consensus 511 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 558 (587)
.+.....+......|++.-|.++.+.++..+|++.. ......+|-+.|
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 334444455555666777777777777777776533 333334444443
No 490
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=35.70 E-value=2.3e+02 Score=23.19 Aligned_cols=47 Identities=11% Similarity=0.027 Sum_probs=29.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCC
Q 038622 129 NTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGE 175 (587)
Q Consensus 129 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 175 (587)
..++..+...++.-.|.++++.+.+.+...+..|.+..+..+...|-
T Consensus 29 ~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 29 LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 34455555555666777777777777666666666666666666554
No 491
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=35.55 E-value=6.5e+02 Score=27.84 Aligned_cols=133 Identities=14% Similarity=0.204 Sum_probs=72.3
Q ss_pred CChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHH
Q 038622 419 GRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRK--RTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAV 496 (587)
Q Consensus 419 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~ 496 (587)
++.......+...... ..........++.+|.+.+ ++++|+....++.+.+ + ......+.-++- +-.+.
T Consensus 792 ~KVn~ICdair~~l~~-~~~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~~-~---~~ae~alkyl~f----LvDvn 862 (928)
T PF04762_consen 792 SKVNKICDAIRKALEK-PKDKDKYLQPILTAYVKKSPPDLEEALQLIKELREED-P---ESAEEALKYLCF----LVDVN 862 (928)
T ss_pred cHHHHHHHHHHHHhcc-cccchhhHHHHHHHHHhcCchhHHHHHHHHHHHHhcC-h---HHHHHHHhHhee----eccHH
Confidence 3444444444444432 1223345567888888887 8889999888888652 1 111111111111 33455
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCchhhhhhhHHHHHHHHHHHHhcch
Q 038622 497 DFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDRETSMVRGFLKIRKFQDALATFGD 569 (587)
Q Consensus 497 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 569 (587)
++|+.++.. -|.+ ..+.-+-..+.|+.|=+-.++++.+..+.. .--..-...+++++|+..+.+
T Consensus 863 ~Ly~~ALG~---YDl~--Lal~VAq~SQkDPKEYLPfL~~L~~l~~~~----rry~ID~hLkRy~kAL~~L~~ 926 (928)
T PF04762_consen 863 KLYDVALGT---YDLE--LALMVAQQSQKDPKEYLPFLQELQKLPPLY----RRYKIDDHLKRYEKALRHLSA 926 (928)
T ss_pred HHHHHHhhh---cCHH--HHHHHHHHhccChHHHHHHHHHHHhCChhh----eeeeHhhhhCCHHHHHHHHHh
Confidence 566666531 1222 223334455667888888888877765532 111123356778888876644
No 492
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=35.11 E-value=1.6e+02 Score=26.08 Aligned_cols=46 Identities=20% Similarity=0.368 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 038622 106 IEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQ 153 (587)
Q Consensus 106 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 153 (587)
.++|..+++.-... ..+..+...+..++...|+...+.++++.+..
T Consensus 115 i~kA~~~L~~~~~~--~~~~Y~lAl~aYAL~la~~~~~~~~~~~~L~~ 160 (246)
T PF07678_consen 115 INKALNYLERHLDN--IQDPYTLALVAYALALAGDSPQASKLLNKLNS 160 (246)
T ss_dssp HHHHHHHHHHHHGC--TSSHHHHHHHHHHHHHTTTCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhccc--cCCHHHHHHHHHHHHhhcccchHHHHHHHHHH
Confidence 34555555544332 34555555555555566666777777666654
No 493
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=35.10 E-value=1.6e+02 Score=20.79 Aligned_cols=14 Identities=29% Similarity=0.565 Sum_probs=6.5
Q ss_pred CCHHHHHHHHHHHH
Q 038622 174 GEVEEAVEILNQMI 187 (587)
Q Consensus 174 g~~~~a~~~~~~~~ 187 (587)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 44444444444444
No 494
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=35.03 E-value=3.7e+02 Score=24.83 Aligned_cols=114 Identities=10% Similarity=-0.026 Sum_probs=62.1
Q ss_pred HcCChhhHHHHHHhhccCCC----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 038622 32 KAHQIRPAILMMEEMPGYGL----APDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIE 107 (587)
Q Consensus 32 ~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 107 (587)
..+-...|.+.|+.....+. ..++..-..+.....+.|+.+.-..+++.... ..+......++.+++...+.+
T Consensus 142 ~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~ 218 (324)
T PF11838_consen 142 DPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPE 218 (324)
T ss_dssp -HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HH
T ss_pred chhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHH
Confidence 34446667777777765321 33555666666677777776665555555554 235666677778888888888
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC--hHHHHHHHH
Q 038622 108 DALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGH--VKQALEVMD 149 (587)
Q Consensus 108 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~ 149 (587)
....+++.+...+.-+.... ..++..+...+. .+.+.+.+.
T Consensus 219 ~~~~~l~~~l~~~~v~~~d~-~~~~~~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 219 LLKRLLDLLLSNDKVRSQDI-RYVLAGLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp HHHHHHHHHHCTSTS-TTTH-HHHHHHHH-CSTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCCcccccHHH-HHHHHHHhcCChhhHHHHHHHHH
Confidence 88888888877431222223 333333332332 255555543
No 495
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=34.90 E-value=3.8e+02 Score=24.91 Aligned_cols=88 Identities=16% Similarity=0.221 Sum_probs=52.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCcchH--HHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCCh-HhH
Q 038622 375 SLLTYYCRAGDIKRAADIVQNMTSN---GCEPDIVTY--GTLIGGLCKAGRVEVASKLLRSIQM-----KGIVLTP-QAY 443 (587)
Q Consensus 375 ~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~-~~~ 443 (587)
.++....+.+|.++|.++++++.+. .-.|+...| ...++++...||..++.+.+.+..+ .+++++. ..|
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~f 159 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSF 159 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhH
Confidence 3444555667888888888888764 123344333 3456677788888888888877766 3555533 344
Q ss_pred HHHHHHHH-hcCCHHHHHHH
Q 038622 444 NPVIQALF-RRKRTTEAMRL 462 (587)
Q Consensus 444 ~~l~~~~~-~~g~~~~A~~~ 462 (587)
+.+..-|. ..|++....+.
T Consensus 160 Y~lssqYyk~~~d~a~yYr~ 179 (380)
T KOG2908|consen 160 YSLSSQYYKKIGDFASYYRH 179 (380)
T ss_pred HHHHHHHHHHHHhHHHHHHH
Confidence 44444333 34555544433
No 496
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=34.17 E-value=88 Score=21.35 Aligned_cols=20 Identities=10% Similarity=0.036 Sum_probs=11.1
Q ss_pred HHHHccCCHhHHHHHHHHHH
Q 038622 519 EGLVSLGKEETLVELIDMVM 538 (587)
Q Consensus 519 ~~~~~~g~~~~A~~~~~~~~ 538 (587)
--+-+.|++.+|+..|++++
T Consensus 14 Ve~D~~gr~~eAi~~Y~~aI 33 (75)
T cd02682 14 VKAEKEGNAEDAITNYKKAI 33 (75)
T ss_pred HHHHhcCCHHHHHHHHHHHH
Confidence 33555666666665555444
No 497
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=33.99 E-value=4e+02 Score=24.90 Aligned_cols=55 Identities=15% Similarity=0.234 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC
Q 038622 488 GGGPIGEAVDFVIEMLERGFLPE----FSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS 544 (587)
Q Consensus 488 ~~~~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 544 (587)
.|-..++....+..++.. -|+ ..+|..++++....|.+++.+.+|++++..+..+
T Consensus 115 eGcp~eei~~~L~~li~~--IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqP 173 (353)
T PF15297_consen 115 EGCPKEEILATLSDLIKN--IPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQP 173 (353)
T ss_pred cCCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCh
Confidence 343345555555555542 232 3355556666666666666666666666655544
No 498
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=33.94 E-value=3.5e+02 Score=25.77 Aligned_cols=127 Identities=9% Similarity=-0.081 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH------HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038622 445 PVIQALFRRKRTTEAMRLFREMMEKADPPDAL------TYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLA 518 (587)
Q Consensus 445 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 518 (587)
..+..+.+.+++..|.++|.++.....++... ....-+..++..-+ +++|.+.+++.+.........+...--
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd-~~~A~~~L~~~~~~~~~~~~~~~~~~~ 213 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFE-HEEALDYLNDPLPERLALYQVTSHDEL 213 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccC-HHHHHHHHhhccchhhhhhhhhhhhHH
Q ss_pred HHHHccCCHhHHHHHHHHHHhcCCCCCchhhhhhhHH-------HHHHHHHHHHhcchhhh
Q 038622 519 EGLVSLGKEETLVELIDMVMDKAKFSDRETSMVRGFL-------KIRKFQDALATFGDILD 572 (587)
Q Consensus 519 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~A~~~~~~~~~ 572 (587)
....+....-.+...-.++............++..++ ..|++++|+...=++++
T Consensus 214 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~na~rr~~~~ry~da~~r~yR~~e 274 (380)
T TIGR02710 214 EDVIKRNASILPEIIGSRNGRREAKRRPFLPLLGDLLANAERRATQGRYDDAAARLYRALE 274 (380)
T ss_pred HHHHHhHHhhcchhhhccchhhhhcccchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
No 499
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=33.89 E-value=3.8e+02 Score=24.72 Aligned_cols=28 Identities=14% Similarity=0.120 Sum_probs=16.3
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038622 441 QAYNPVIQALFRRKRTTEAMRLFREMME 468 (587)
Q Consensus 441 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 468 (587)
+++...+.-|++-|+.+.|.+.+.+..+
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ 132 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYE 132 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4555566666666666666665554443
No 500
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=33.88 E-value=1.2e+02 Score=20.84 Aligned_cols=10 Identities=10% Similarity=0.159 Sum_probs=4.5
Q ss_pred HHHHHHHHHH
Q 038622 494 EAVDFVIEML 503 (587)
Q Consensus 494 ~A~~~~~~~~ 503 (587)
.|+.++.+++
T Consensus 5 ~a~~l~~~Av 14 (77)
T cd02683 5 AAKEVLKRAV 14 (77)
T ss_pred HHHHHHHHHH
Confidence 3444444444
Done!