Query 038622
Match_columns 587
No_of_seqs 701 out of 3347
Neff 12.1
Searched_HMMs 29240
Date Mon Mar 25 22:34:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038622.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038622hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.2E-42 4E-47 352.7 42.9 503 32-552 65-592 (597)
2 2xpi_A Anaphase-promoting comp 100.0 1E-42 3.6E-47 353.1 41.0 491 17-523 81-596 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 6.5E-32 2.2E-36 257.9 45.3 366 167-544 6-372 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 2.6E-31 8.9E-36 253.7 47.4 382 132-526 6-388 (388)
5 2gw1_A Mitochondrial precursor 100.0 3.7E-28 1.2E-32 241.7 40.1 453 55-546 6-484 (514)
6 2gw1_A Mitochondrial precursor 100.0 1.8E-27 6E-32 236.7 40.4 447 20-504 6-477 (514)
7 3fp2_A TPR repeat-containing p 100.0 2.6E-26 8.9E-31 229.6 43.5 441 21-504 26-490 (537)
8 3fp2_A TPR repeat-containing p 100.0 4.8E-26 1.6E-30 227.6 42.5 448 55-546 25-497 (537)
9 2y4t_A DNAJ homolog subfamily 100.0 6.4E-26 2.2E-30 221.3 39.5 352 159-544 25-414 (450)
10 2y4t_A DNAJ homolog subfamily 100.0 1.4E-25 4.9E-30 218.8 37.8 314 7-329 14-358 (450)
11 3ieg_A DNAJ homolog subfamily 99.9 2.6E-23 8.9E-28 196.3 39.6 329 195-556 3-352 (359)
12 4g26_A Pentatricopeptide repea 99.9 9.2E-26 3.1E-30 217.8 22.2 202 5-206 10-221 (501)
13 4g26_A Pentatricopeptide repea 99.9 2.6E-25 9E-30 214.6 23.6 202 76-277 11-222 (501)
14 2xm6_A Protein corresponding t 99.9 1.2E-21 3.9E-26 192.5 49.3 354 159-543 38-435 (490)
15 2xm6_A Protein corresponding t 99.9 1E-21 3.6E-26 192.8 48.1 386 124-542 38-469 (490)
16 3ieg_A DNAJ homolog subfamily 99.9 2.2E-22 7.5E-27 189.9 38.9 332 159-524 2-353 (359)
17 3hym_B Cell division cycle pro 99.9 7.3E-22 2.5E-26 183.9 32.7 283 230-521 22-314 (330)
18 2ooe_A Cleavage stimulation fa 99.9 6E-21 2E-25 189.4 40.3 428 113-576 2-495 (530)
19 2ooe_A Cleavage stimulation fa 99.9 2.3E-20 7.7E-25 185.3 43.5 433 8-505 2-492 (530)
20 3hym_B Cell division cycle pro 99.9 1.7E-21 5.9E-26 181.4 30.8 285 54-345 21-314 (330)
21 1xi4_A Clathrin heavy chain; a 99.9 2.9E-18 9.8E-23 175.5 52.4 484 22-570 987-1531(1630)
22 1fch_A Peroxisomal targeting s 99.9 7.9E-22 2.7E-26 186.8 24.4 309 240-575 35-361 (368)
23 4g1t_A Interferon-induced prot 99.9 3.4E-20 1.2E-24 181.8 36.8 387 125-545 51-464 (472)
24 1fch_A Peroxisomal targeting s 99.9 2.3E-21 8E-26 183.5 25.7 308 204-539 34-358 (368)
25 4eqf_A PEX5-related protein; a 99.9 8.2E-22 2.8E-26 186.3 22.0 269 301-575 66-358 (365)
26 4g1t_A Interferon-induced prot 99.9 9.8E-20 3.3E-24 178.6 36.9 387 159-578 50-464 (472)
27 1xi4_A Clathrin heavy chain; a 99.9 4.2E-18 1.4E-22 174.3 48.8 319 93-468 988-1308(1630)
28 3cv0_A Peroxisome targeting si 99.9 1.6E-20 5.6E-25 174.5 25.3 266 305-577 26-319 (327)
29 4eqf_A PEX5-related protein; a 99.9 2.6E-21 8.8E-26 182.8 20.0 264 265-537 65-353 (365)
30 3mkr_A Coatomer subunit epsilo 99.9 1.4E-19 4.7E-24 163.4 28.7 275 273-568 7-289 (291)
31 3cv0_A Peroxisome targeting si 99.9 5.7E-20 2E-24 170.8 24.3 265 269-542 25-317 (327)
32 3e4b_A ALGK; tetratricopeptide 99.8 1E-18 3.4E-23 168.6 27.0 219 302-540 178-421 (452)
33 3mkr_A Coatomer subunit epsilo 99.8 2E-18 6.9E-23 155.7 27.1 273 238-534 7-288 (291)
34 3e4b_A ALGK; tetratricopeptide 99.8 6.2E-19 2.1E-23 170.0 24.9 379 166-574 9-422 (452)
35 1b89_A Protein (clathrin heavy 99.8 7.3E-19 2.5E-23 161.2 23.8 238 67-346 15-252 (449)
36 1b89_A Protein (clathrin heavy 99.8 1.1E-18 3.9E-23 159.9 24.0 284 31-357 14-304 (449)
37 2pl2_A Hypothetical conserved 99.8 1E-18 3.4E-23 150.8 20.6 196 369-570 4-211 (217)
38 2pl2_A Hypothetical conserved 99.8 4.2E-18 1.4E-22 146.9 20.0 200 17-222 2-212 (217)
39 3uq3_A Heat shock protein STI1 99.8 1.8E-17 6E-22 148.1 24.9 226 301-541 6-237 (258)
40 2h6f_A Protein farnesyltransfe 99.8 3.1E-17 1.1E-21 152.8 25.2 245 300-552 97-361 (382)
41 3uq3_A Heat shock protein STI1 99.8 1.2E-17 4E-22 149.3 21.5 226 335-574 5-237 (258)
42 2h6f_A Protein farnesyltransfe 99.8 2.9E-17 1E-21 153.0 23.4 237 334-577 96-352 (382)
43 3u4t_A TPR repeat-containing p 99.8 2.7E-17 9.1E-22 148.2 22.3 243 300-546 3-256 (272)
44 3u4t_A TPR repeat-containing p 99.8 9E-17 3.1E-21 144.7 25.1 230 340-575 8-252 (272)
45 1ouv_A Conserved hypothetical 99.8 1.2E-15 4.1E-20 137.3 32.4 228 298-544 4-255 (273)
46 1xnf_A Lipoprotein NLPI; TPR, 99.8 6.9E-17 2.4E-21 145.8 23.0 246 311-567 16-269 (275)
47 1ouv_A Conserved hypothetical 99.8 3.4E-16 1.1E-20 140.9 27.0 233 332-581 3-259 (273)
48 4e6h_A MRNA 3'-END-processing 99.8 4.9E-14 1.7E-18 140.1 43.7 454 36-545 48-575 (679)
49 4e6h_A MRNA 3'-END-processing 99.8 7E-14 2.4E-18 139.0 42.9 148 4-153 51-222 (679)
50 3sf4_A G-protein-signaling mod 99.7 2.4E-16 8.2E-21 151.2 21.2 293 266-560 10-363 (406)
51 2ho1_A Type 4 fimbrial biogene 99.7 2E-15 6.9E-20 134.1 25.6 207 335-546 37-244 (252)
52 2q7f_A YRRB protein; TPR, prot 99.7 3.7E-16 1.3E-20 138.1 20.7 206 334-545 22-227 (243)
53 2vq2_A PILW, putative fimbrial 99.7 4.6E-15 1.6E-19 129.3 25.2 207 334-545 7-216 (225)
54 2ho1_A Type 4 fimbrial biogene 99.7 1.1E-15 3.8E-20 135.8 21.5 207 370-580 37-245 (252)
55 3vtx_A MAMA; tetratricopeptide 99.7 1.9E-15 6.4E-20 126.9 21.8 170 369-544 4-174 (184)
56 3vtx_A MAMA; tetratricopeptide 99.7 5.2E-16 1.8E-20 130.4 18.3 169 404-577 4-174 (184)
57 2q7f_A YRRB protein; TPR, prot 99.7 1.1E-15 3.6E-20 135.1 21.0 214 301-522 24-238 (243)
58 4a1s_A PINS, partner of inscut 99.7 5.4E-16 1.9E-20 148.9 20.2 272 270-543 53-375 (411)
59 4abn_A Tetratricopeptide repea 99.7 8.5E-16 2.9E-20 149.1 21.4 213 351-571 84-319 (474)
60 4a1s_A PINS, partner of inscut 99.7 9.6E-17 3.3E-21 154.2 14.6 277 301-579 49-378 (411)
61 1xnf_A Lipoprotein NLPI; TPR, 99.7 7.1E-16 2.4E-20 139.1 18.0 249 30-288 15-269 (275)
62 3sf4_A G-protein-signaling mod 99.7 8.9E-16 3E-20 147.2 19.1 296 232-529 11-365 (406)
63 3ro2_A PINS homolog, G-protein 99.7 4E-16 1.4E-20 145.4 15.9 96 267-363 7-111 (338)
64 2vq2_A PILW, putative fimbrial 99.7 3.3E-14 1.1E-18 123.8 27.1 199 301-504 9-210 (225)
65 3ro2_A PINS homolog, G-protein 99.7 1.4E-15 4.8E-20 141.7 19.0 279 232-542 7-334 (338)
66 2ond_A Cleavage stimulation fa 99.7 8.4E-14 2.9E-18 127.3 29.4 222 317-545 33-275 (308)
67 2ond_A Cleavage stimulation fa 99.7 2.7E-14 9.4E-19 130.5 25.5 220 352-578 33-275 (308)
68 3ulq_A Response regulator aspa 99.7 3.9E-15 1.3E-19 141.2 19.1 232 342-574 110-369 (383)
69 3ulq_A Response regulator aspa 99.7 4.5E-14 1.6E-18 133.8 25.8 235 306-543 109-371 (383)
70 4abn_A Tetratricopeptide repea 99.6 7.6E-15 2.6E-19 142.4 20.3 212 316-536 84-317 (474)
71 4i17_A Hypothetical protein; T 99.6 4.5E-14 1.5E-18 123.1 18.6 201 368-579 5-215 (228)
72 3nf1_A KLC 1, kinesin light ch 99.6 5.5E-15 1.9E-19 136.0 13.0 239 302-543 29-310 (311)
73 4gyw_A UDP-N-acetylglucosamine 99.6 1.8E-14 6.3E-19 145.0 16.3 170 369-544 8-178 (723)
74 4i17_A Hypothetical protein; T 99.6 1.8E-13 6E-18 119.3 19.9 203 332-546 4-215 (228)
75 4gyw_A UDP-N-acetylglucosamine 99.6 7.9E-14 2.7E-18 140.5 19.7 168 332-504 6-173 (723)
76 3as5_A MAMA; tetratricopeptide 99.6 2.6E-13 8.9E-18 114.0 19.9 173 371-548 9-181 (186)
77 3nf1_A KLC 1, kinesin light ch 99.6 1.4E-14 4.8E-19 133.2 11.6 243 332-575 24-309 (311)
78 1hz4_A MALT regulatory protein 99.5 3.2E-12 1.1E-16 120.7 27.0 167 374-541 139-323 (373)
79 3q15_A PSP28, response regulat 99.5 2E-12 6.8E-17 122.2 25.5 232 305-540 106-365 (378)
80 3q15_A PSP28, response regulat 99.5 1.6E-12 5.6E-17 122.8 23.4 233 268-504 104-364 (378)
81 1hz4_A MALT regulatory protein 99.5 2E-12 6.7E-17 122.2 23.7 271 305-576 19-325 (373)
82 3as5_A MAMA; tetratricopeptide 99.5 3.4E-13 1.2E-17 113.3 15.4 169 405-577 8-177 (186)
83 3qky_A Outer membrane assembly 99.5 1.5E-12 5E-17 116.1 19.6 212 334-566 14-254 (261)
84 3spa_A Mtrpol, DNA-directed RN 99.5 9.4E-14 3.2E-18 138.3 12.6 163 20-187 127-308 (1134)
85 3urz_A Uncharacterized protein 99.5 2.7E-13 9.3E-18 115.8 12.7 172 370-546 4-192 (208)
86 3urz_A Uncharacterized protein 99.5 8.8E-13 3E-17 112.6 15.3 126 446-575 60-188 (208)
87 1qqe_A Vesicular transport pro 99.5 1.2E-12 4E-17 118.5 16.3 210 315-542 32-271 (292)
88 3qky_A Outer membrane assembly 99.5 3.3E-12 1.1E-16 113.7 18.5 188 370-578 15-229 (261)
89 3mv2_B Coatomer subunit epsilo 99.5 2.8E-11 9.5E-16 106.5 23.7 267 274-568 22-307 (310)
90 3spa_A Mtrpol, DNA-directed RN 99.5 9.4E-14 3.2E-18 138.3 8.8 116 90-205 127-246 (1134)
91 2pzi_A Probable serine/threoni 99.4 1E-12 3.5E-17 133.4 16.0 173 346-526 402-583 (681)
92 1qqe_A Vesicular transport pro 99.4 5.3E-12 1.8E-16 114.2 17.4 211 350-576 32-272 (292)
93 3dra_A Protein farnesyltransfe 99.4 1.7E-10 5.9E-15 102.8 26.0 224 316-544 49-292 (306)
94 4ga2_A E3 SUMO-protein ligase 99.4 4.4E-13 1.5E-17 107.5 7.6 131 411-546 3-135 (150)
95 3edt_B KLC 2, kinesin light ch 99.4 3.8E-12 1.3E-16 115.0 14.2 228 311-540 12-281 (283)
96 4ga2_A E3 SUMO-protein ligase 99.4 1.7E-12 5.8E-17 104.0 10.1 145 376-526 3-149 (150)
97 3edt_B KLC 2, kinesin light ch 99.4 2.2E-12 7.7E-17 116.5 12.0 228 346-574 12-282 (283)
98 2yhc_A BAMD, UPF0169 lipoprote 99.4 1.1E-11 3.9E-16 107.3 15.7 186 369-574 3-214 (225)
99 2r5s_A Uncharacterized protein 99.4 1.3E-12 4.6E-17 108.2 9.4 162 406-573 7-173 (176)
100 2pzi_A Probable serine/threoni 99.4 2.4E-11 8.2E-16 123.4 19.6 173 311-489 402-582 (681)
101 2yhc_A BAMD, UPF0169 lipoprote 99.4 7.7E-11 2.6E-15 102.0 19.9 190 334-546 3-219 (225)
102 2fo7_A Synthetic consensus TPR 99.4 7.2E-11 2.5E-15 92.9 18.1 133 407-543 3-135 (136)
103 3qou_A Protein YBBN; thioredox 99.3 8.5E-12 2.9E-16 112.3 13.1 163 404-572 116-283 (287)
104 2uy1_A Cleavage stimulation fa 99.3 7E-09 2.4E-13 100.4 33.7 420 67-576 6-455 (493)
105 3dra_A Protein farnesyltransfe 99.3 1.8E-09 6.1E-14 96.3 27.0 231 282-519 50-301 (306)
106 3rjv_A Putative SEL1 repeat pr 99.3 1.9E-10 6.6E-15 98.2 20.1 176 353-542 4-199 (212)
107 3rjv_A Putative SEL1 repeat pr 99.3 6.8E-11 2.3E-15 101.0 16.8 178 387-577 3-201 (212)
108 3mv2_B Coatomer subunit epsilo 99.3 1.1E-09 3.6E-14 96.5 23.8 179 144-329 85-282 (310)
109 2uy1_A Cleavage stimulation fa 99.3 2.6E-09 8.8E-14 103.4 28.9 360 34-433 28-412 (493)
110 4gco_A Protein STI-1; structur 99.3 6.5E-11 2.2E-15 91.3 13.7 101 441-545 14-115 (126)
111 2vsy_A XCC0866; transferase, g 99.3 9.8E-11 3.3E-15 117.1 18.4 155 384-544 3-161 (568)
112 3qou_A Protein YBBN; thioredox 99.3 9.2E-11 3.2E-15 105.6 16.3 165 368-539 115-283 (287)
113 2r5s_A Uncharacterized protein 99.3 3.7E-11 1.3E-15 99.5 12.6 163 372-539 8-172 (176)
114 2fo7_A Synthetic consensus TPR 99.3 8E-11 2.7E-15 92.6 13.9 132 441-575 2-134 (136)
115 3gyz_A Chaperone protein IPGC; 99.3 2.9E-11 1E-15 96.0 10.7 102 440-545 36-138 (151)
116 2vsy_A XCC0866; transferase, g 99.3 4.9E-11 1.7E-15 119.2 14.9 155 418-577 2-161 (568)
117 2vgx_A Chaperone SYCD; alterna 99.2 1E-10 3.5E-15 93.2 11.3 115 427-546 9-124 (148)
118 2ifu_A Gamma-SNAP; membrane fu 99.2 3.7E-11 1.3E-15 109.6 9.9 205 312-545 3-228 (307)
119 1hh8_A P67PHOX, NCF-2, neutrop 99.2 6.9E-10 2.4E-14 95.2 17.5 131 408-544 9-154 (213)
120 3gyz_A Chaperone protein IPGC; 99.2 8.3E-12 2.8E-16 99.2 4.7 104 472-578 33-138 (151)
121 4gco_A Protein STI-1; structur 99.2 7E-10 2.4E-14 85.5 14.6 112 405-521 13-125 (126)
122 2ifu_A Gamma-SNAP; membrane fu 99.2 1.5E-10 5.2E-15 105.5 12.3 224 277-532 3-253 (307)
123 2e2e_A Formate-dependent nitri 99.2 6.5E-10 2.2E-14 92.1 14.8 128 416-548 21-152 (177)
124 1a17_A Serine/threonine protei 99.1 1.4E-09 4.9E-14 88.9 15.7 131 441-574 14-147 (166)
125 3q7a_A Farnesyltransferase alp 99.1 1.9E-08 6.4E-13 90.6 23.8 223 316-543 70-335 (349)
126 2c2l_A CHIP, carboxy terminus 99.1 4.1E-10 1.4E-14 100.9 12.5 194 370-573 4-199 (281)
127 3dss_A Geranylgeranyl transfer 99.1 5.9E-08 2E-12 87.0 25.8 187 351-544 90-308 (331)
128 2xcb_A PCRH, regulatory protei 99.1 4.6E-10 1.6E-14 88.9 10.9 103 440-546 18-121 (142)
129 3u3w_A Transcriptional activat 99.1 1.9E-08 6.5E-13 90.9 22.0 165 376-541 81-267 (293)
130 2vgx_A Chaperone SYCD; alterna 99.1 1.8E-10 6.1E-15 91.8 7.0 114 461-578 8-123 (148)
131 1p5q_A FKBP52, FK506-binding p 99.1 2.6E-09 8.9E-14 98.4 14.7 129 440-572 147-293 (336)
132 4gcn_A Protein STI-1; structur 99.1 1.1E-09 3.9E-14 84.5 10.5 102 441-546 9-118 (127)
133 2lni_A Stress-induced-phosphop 99.1 2.7E-09 9.1E-14 83.5 12.8 117 439-558 15-132 (133)
134 2qfc_A PLCR protein; TPR, HTH, 99.1 2E-08 6.8E-13 90.8 20.2 168 373-541 78-267 (293)
135 3q7a_A Farnesyltransferase alp 99.0 1.6E-07 5.6E-12 84.5 25.5 231 282-519 71-345 (349)
136 4f3v_A ESX-1 secretion system 99.0 2.7E-09 9.1E-14 92.7 13.3 190 347-543 18-240 (282)
137 4gcn_A Protein STI-1; structur 99.0 6.6E-10 2.3E-14 85.8 8.6 104 475-581 8-120 (127)
138 1hh8_A P67PHOX, NCF-2, neutrop 99.0 1.8E-08 6.2E-13 86.3 18.7 129 21-155 7-151 (213)
139 1a17_A Serine/threonine protei 99.0 8.5E-09 2.9E-13 84.2 15.7 130 406-540 14-146 (166)
140 4f3v_A ESX-1 secretion system 99.0 4E-10 1.4E-14 97.8 7.7 188 382-576 18-240 (282)
141 2qfc_A PLCR protein; TPR, HTH, 99.0 9.3E-09 3.2E-13 93.0 17.1 167 407-574 77-267 (293)
142 3upv_A Heat shock protein STI1 99.0 4.6E-09 1.6E-13 81.2 12.8 98 440-541 4-102 (126)
143 2fbn_A 70 kDa peptidylprolyl i 99.0 5.3E-10 1.8E-14 94.6 7.7 153 416-573 15-186 (198)
144 3sz7_A HSC70 cochaperone (SGT) 99.0 1.1E-08 3.7E-13 83.4 15.3 104 439-546 10-114 (164)
145 3u3w_A Transcriptional activat 99.0 2.3E-07 7.7E-12 83.8 25.3 164 341-504 81-265 (293)
146 2vyi_A SGTA protein; chaperone 99.0 5.2E-09 1.8E-13 81.5 12.5 116 440-559 12-129 (131)
147 3dss_A Geranylgeranyl transfer 99.0 7.4E-07 2.5E-11 79.9 27.6 196 316-519 90-317 (331)
148 1na0_A Designed protein CTPR3; 99.0 1.2E-08 4E-13 78.7 14.3 102 440-544 9-110 (125)
149 1hxi_A PEX5, peroxisome target 99.0 3.6E-09 1.2E-13 80.8 10.6 97 443-543 20-117 (121)
150 1p5q_A FKBP52, FK506-binding p 99.0 9.5E-09 3.3E-13 94.6 15.4 96 440-539 196-293 (336)
151 1hxi_A PEX5, peroxisome target 99.0 4.3E-09 1.5E-13 80.3 10.9 97 478-577 20-118 (121)
152 2e2e_A Formate-dependent nitri 99.0 1.3E-09 4.3E-14 90.4 8.4 126 450-578 20-149 (177)
153 2xcb_A PCRH, regulatory protei 99.0 8.9E-10 3.1E-14 87.3 7.1 113 462-578 6-120 (142)
154 2c2l_A CHIP, carboxy terminus 99.0 1.3E-08 4.5E-13 91.1 15.3 164 404-577 3-168 (281)
155 2lni_A Stress-induced-phosphop 99.0 1.2E-08 4.2E-13 79.6 13.4 118 404-526 15-133 (133)
156 3gw4_A Uncharacterized protein 99.0 6.3E-09 2.2E-13 88.4 12.4 160 382-543 4-179 (203)
157 2vyi_A SGTA protein; chaperone 99.0 1.9E-08 6.4E-13 78.2 14.1 118 405-527 12-130 (131)
158 1na0_A Designed protein CTPR3; 98.9 2.8E-08 9.6E-13 76.5 14.7 116 405-525 9-125 (125)
159 3q49_B STIP1 homology and U bo 98.9 1.8E-08 6.2E-13 79.2 13.7 101 439-543 8-109 (137)
160 3gw4_A Uncharacterized protein 98.9 5E-09 1.7E-13 89.0 10.0 159 416-576 3-179 (203)
161 2kck_A TPR repeat; tetratricop 98.9 2.8E-08 9.6E-13 74.7 13.2 103 439-544 5-110 (112)
162 2fbn_A 70 kDa peptidylprolyl i 98.9 1.7E-09 5.8E-14 91.4 6.5 130 407-540 40-186 (198)
163 3upv_A Heat shock protein STI1 98.9 3.4E-08 1.2E-12 76.2 13.3 96 406-504 5-100 (126)
164 1elr_A TPR2A-domain of HOP; HO 98.9 1.9E-08 6.5E-13 78.2 11.8 108 440-551 4-119 (131)
165 1elw_A TPR1-domain of HOP; HOP 98.9 4.8E-08 1.6E-12 74.2 13.5 102 440-545 4-106 (118)
166 2hr2_A Hypothetical protein; a 98.9 1.3E-08 4.5E-13 79.4 10.0 103 441-545 12-136 (159)
167 1wao_1 Serine/threonine protei 98.8 4.2E-09 1.4E-13 101.8 8.0 122 443-568 9-134 (477)
168 1dce_A Protein (RAB geranylger 98.8 2E-08 6.8E-13 98.8 12.7 171 385-560 44-242 (567)
169 1elw_A TPR1-domain of HOP; HOP 98.8 1.5E-07 5.2E-12 71.4 15.0 112 405-521 4-116 (118)
170 3rkv_A Putative peptidylprolyl 98.8 3.1E-08 1.1E-12 80.4 10.9 102 441-545 12-131 (162)
171 2xev_A YBGF; tetratricopeptide 98.8 8.1E-08 2.8E-12 74.4 12.8 100 442-545 4-110 (129)
172 1kt0_A FKBP51, 51 kDa FK506-bi 98.8 7.8E-08 2.7E-12 92.6 15.2 121 441-565 269-406 (457)
173 3q49_B STIP1 homology and U bo 98.8 2.9E-08 9.9E-13 78.0 9.6 102 472-576 6-109 (137)
174 1ihg_A Cyclophilin 40; ppiase 98.8 7.4E-08 2.5E-12 89.6 13.7 121 442-566 225-363 (370)
175 2dba_A Smooth muscle cell asso 98.8 1.7E-07 5.8E-12 74.6 13.6 102 439-545 27-133 (148)
176 3k9i_A BH0479 protein; putativ 98.7 1.8E-08 6.3E-13 76.5 7.0 108 452-572 2-112 (117)
177 3sz7_A HSC70 cochaperone (SGT) 98.7 1.2E-07 3.9E-12 77.2 12.2 99 19-119 10-108 (164)
178 2hr2_A Hypothetical protein; a 98.7 1.8E-08 6E-13 78.7 6.7 99 476-577 12-135 (159)
179 1elr_A TPR2A-domain of HOP; HO 98.7 1.1E-07 3.6E-12 73.9 11.0 113 406-522 5-123 (131)
180 2if4_A ATFKBP42; FKBP-like, al 98.7 3.7E-08 1.3E-12 90.6 9.2 98 477-577 232-332 (338)
181 2dba_A Smooth muscle cell asso 98.7 4.9E-07 1.7E-11 71.9 14.8 112 405-522 28-144 (148)
182 1zu2_A Mitochondrial import re 98.7 4.4E-08 1.5E-12 76.3 7.6 91 452-545 14-125 (158)
183 1wao_1 Serine/threonine protei 98.7 9.9E-09 3.4E-13 99.2 4.8 132 408-544 9-154 (477)
184 2kck_A TPR repeat; tetratricop 98.7 2.6E-07 8.8E-12 69.3 11.8 98 55-154 6-106 (112)
185 1dce_A Protein (RAB geranylger 98.7 7E-07 2.4E-11 87.8 17.8 156 419-579 43-227 (567)
186 2if4_A ATFKBP42; FKBP-like, al 98.7 4.6E-08 1.6E-12 90.0 8.6 153 370-545 179-333 (338)
187 2xev_A YBGF; tetratricopeptide 98.7 1.2E-06 4E-11 67.8 15.2 95 408-505 5-105 (129)
188 1kt0_A FKBP51, 51 kDa FK506-bi 98.6 3E-07 1E-11 88.5 13.7 95 440-538 317-413 (457)
189 3k9i_A BH0479 protein; putativ 98.6 1.7E-08 5.9E-13 76.6 3.8 93 488-581 3-98 (117)
190 3ro3_A PINS homolog, G-protein 98.6 2.9E-07 1E-11 74.6 11.5 134 407-541 11-159 (164)
191 4b4t_Q 26S proteasome regulato 98.6 2.5E-06 8.5E-11 82.0 19.8 198 306-504 10-244 (434)
192 3rkv_A Putative peptidylprolyl 98.6 2.6E-07 8.8E-12 74.9 10.8 78 440-521 63-142 (162)
193 3ro3_A PINS homolog, G-protein 98.6 6.7E-08 2.3E-12 78.5 7.0 135 441-576 10-161 (164)
194 1ihg_A Cyclophilin 40; ppiase 98.6 3.6E-07 1.2E-11 84.9 12.6 91 439-533 272-363 (370)
195 4b4t_Q 26S proteasome regulato 98.6 3.5E-06 1.2E-10 81.0 19.1 201 269-469 8-245 (434)
196 2l6j_A TPR repeat-containing p 98.5 1E-06 3.5E-11 65.9 11.6 96 474-572 3-99 (111)
197 2l6j_A TPR repeat-containing p 98.5 1.1E-07 3.9E-12 71.2 5.1 95 439-537 3-104 (111)
198 1zu2_A Mitochondrial import re 98.5 2.4E-07 8.2E-12 72.1 6.9 90 488-580 15-127 (158)
199 2kat_A Uncharacterized protein 98.4 1.3E-06 4.6E-11 65.8 9.7 84 457-544 2-86 (115)
200 1klx_A Cysteine rich protein B 98.4 9.9E-06 3.4E-10 63.1 14.3 111 419-541 9-127 (138)
201 2kat_A Uncharacterized protein 98.3 6E-07 2E-11 67.7 5.7 84 493-578 2-87 (115)
202 1na3_A Designed protein CTPR2; 98.3 6.7E-06 2.3E-10 58.6 10.2 63 478-543 12-75 (91)
203 1klx_A Cysteine rich protein B 98.3 2.9E-05 9.9E-10 60.4 14.3 110 385-506 10-127 (138)
204 1na3_A Designed protein CTPR2; 98.3 4.6E-06 1.6E-10 59.5 8.5 83 439-525 8-91 (91)
205 2kc7_A BFR218_protein; tetratr 98.3 4E-06 1.4E-10 61.0 8.3 88 480-577 5-94 (99)
206 3n71_A Histone lysine methyltr 98.2 1.5E-05 5E-10 76.4 12.9 59 514-572 396-463 (490)
207 3ma5_A Tetratricopeptide repea 98.1 1.8E-06 6E-11 63.0 4.2 70 472-544 4-74 (100)
208 3ma5_A Tetratricopeptide repea 98.1 1.1E-05 3.7E-10 58.7 8.4 83 439-523 6-89 (100)
209 3n71_A Histone lysine methyltr 98.1 2.1E-05 7.3E-10 75.3 12.2 127 414-541 318-465 (490)
210 3bee_A Putative YFRE protein; 98.1 5.9E-05 2E-09 53.4 11.1 77 472-551 3-82 (93)
211 1pc2_A Mitochondria fission pr 98.0 0.00011 3.7E-09 56.5 11.1 88 456-546 14-106 (152)
212 3ly7_A Transcriptional activat 97.9 0.00027 9.1E-09 63.6 14.1 72 472-546 274-345 (372)
213 2kc7_A BFR218_protein; tetratr 97.9 2.2E-05 7.5E-10 57.0 5.8 87 446-544 6-94 (99)
214 3ly7_A Transcriptional activat 97.8 0.00012 4.1E-09 65.8 9.7 72 509-580 275-346 (372)
215 1pc2_A Mitochondria fission pr 97.7 5.8E-05 2E-09 58.0 5.6 88 492-580 14-107 (152)
216 3lvg_A Clathrin heavy chain 1; 97.6 1.3E-07 4.3E-12 86.1 -11.9 223 54-312 53-275 (624)
217 3u64_A Protein TP_0956; tetrat 97.5 0.00064 2.2E-08 58.4 10.3 90 456-550 179-279 (301)
218 2v5f_A Prolyl 4-hydroxylase su 97.5 0.0011 3.8E-08 48.2 10.4 71 474-545 4-80 (104)
219 3lvg_A Clathrin heavy chain 1; 97.5 1.8E-07 6.1E-12 85.2 -12.0 233 19-288 53-285 (624)
220 3bee_A Putative YFRE protein; 97.5 0.001 3.5E-08 47.0 9.6 67 52-119 3-72 (93)
221 3qww_A SET and MYND domain-con 97.5 0.00037 1.3E-08 65.6 9.3 88 452-540 310-411 (433)
222 1nzn_A CGI-135 protein, fissio 97.5 0.0012 4.3E-08 48.6 9.8 91 453-546 14-109 (126)
223 3qwp_A SET and MYND domain-con 97.3 0.0012 4.2E-08 62.2 10.8 93 447-540 294-400 (429)
224 3u64_A Protein TP_0956; tetrat 97.3 0.0027 9.3E-08 54.6 11.2 110 420-538 178-296 (301)
225 2v5f_A Prolyl 4-hydroxylase su 97.3 0.0036 1.2E-07 45.4 10.5 65 439-504 4-74 (104)
226 3qww_A SET and MYND domain-con 97.2 0.0015 5E-08 61.6 9.9 86 418-504 311-410 (433)
227 4ady_A RPN2, 26S proteasome re 97.2 0.25 8.6E-06 50.6 37.1 277 240-525 384-679 (963)
228 4h7y_A Dual specificity protei 97.2 0.0044 1.5E-07 46.8 10.0 105 52-157 10-126 (161)
229 4ady_A RPN2, 26S proteasome re 97.2 0.29 9.8E-06 50.2 37.4 260 275-545 384-662 (963)
230 3qwp_A SET and MYND domain-con 97.0 0.0047 1.6E-07 58.2 11.6 89 415-504 297-399 (429)
231 1nzn_A CGI-135 protein, fissio 96.9 0.0017 5.8E-08 47.9 5.6 88 492-580 17-110 (126)
232 4h7y_A Dual specificity protei 96.9 0.0099 3.4E-07 44.9 9.6 103 439-544 12-127 (161)
233 3mkq_B Coatomer subunit alpha; 96.6 0.14 4.9E-06 40.5 14.6 102 28-150 13-114 (177)
234 1y8m_A FIS1; mitochondria, unk 96.5 0.071 2.4E-06 40.1 11.6 75 472-546 36-112 (144)
235 3o48_A Mitochondria fission 1 96.4 0.033 1.1E-06 41.2 9.3 73 472-546 37-113 (134)
236 4b4t_P 26S proteasome regulato 96.4 0.72 2.5E-05 43.6 21.3 169 373-542 140-326 (445)
237 3mkq_A Coatomer beta'-subunit; 96.3 0.13 4.5E-06 53.6 17.7 45 346-396 663-707 (814)
238 3mkq_B Coatomer subunit alpha; 96.1 0.38 1.3E-05 38.0 16.4 100 345-465 15-114 (177)
239 3mkq_A Coatomer beta'-subunit; 96.1 0.16 5.4E-06 53.0 16.8 46 416-467 663-708 (814)
240 3ffl_A Anaphase-promoting comp 96.0 0.026 8.9E-07 43.8 7.6 131 400-544 13-155 (167)
241 4gns_B Protein CSD3, chitin bi 95.9 0.04 1.4E-06 55.2 10.3 55 481-538 343-398 (754)
242 3ffl_A Anaphase-promoting comp 95.5 0.047 1.6E-06 42.4 7.2 122 19-153 19-150 (167)
243 1wy6_A Hypothetical protein ST 95.2 0.65 2.2E-05 34.4 16.5 140 381-543 18-157 (172)
244 4gns_B Protein CSD3, chitin bi 95.2 0.052 1.8E-06 54.4 8.3 58 513-570 339-397 (754)
245 3o48_A Mitochondria fission 1 95.0 0.33 1.1E-05 36.0 10.1 67 403-469 38-107 (134)
246 1y8m_A FIS1; mitochondria, unk 95.0 0.79 2.7E-05 34.5 12.1 66 403-468 37-105 (144)
247 1wy6_A Hypothetical protein ST 94.2 1.2 4.2E-05 33.0 14.8 59 236-295 97-155 (172)
248 3lpz_A GET4 (YOR164C homolog); 93.7 3.5 0.00012 36.6 15.5 22 551-572 194-215 (336)
249 4fhn_B Nucleoporin NUP120; pro 93.3 1.7 5.7E-05 47.1 15.6 129 128-258 902-1049(1139)
250 1qsa_A Protein (soluble lytic 93.3 7 0.00024 38.6 36.5 200 279-500 228-437 (618)
251 2wpv_A GET4, UPF0363 protein Y 92.7 4.9 0.00017 35.4 15.4 147 412-573 40-217 (312)
252 4b4t_P 26S proteasome regulato 92.3 7.6 0.00026 36.6 21.9 96 408-504 140-246 (445)
253 2ff4_A Probable regulatory pro 92.2 1.3 4.4E-05 41.0 11.4 78 443-522 174-256 (388)
254 4fhn_B Nucleoporin NUP120; pro 92.2 1 3.4E-05 48.8 12.1 85 476-562 900-989 (1139)
255 3txn_A 26S proteasome regulato 92.2 7 0.00024 35.9 20.2 28 265-292 19-46 (394)
256 2ff4_A Probable regulatory pro 91.6 1.2 4.1E-05 41.2 10.5 72 93-165 174-250 (388)
257 1zbp_A Hypothetical protein VP 89.2 0.67 2.3E-05 39.4 5.8 123 413-545 5-134 (273)
258 2wpv_A GET4, UPF0363 protein Y 88.7 12 0.00042 33.0 20.6 82 438-539 132-216 (312)
259 1v54_E Cytochrome C oxidase po 87.9 4.2 0.00014 28.3 7.9 46 353-398 28-73 (109)
260 1qsa_A Protein (soluble lytic 87.8 23 0.00078 35.0 39.4 396 30-464 16-437 (618)
261 1v54_E Cytochrome C oxidase po 87.7 5.4 0.00018 27.8 8.7 50 385-434 25-74 (109)
262 4b4t_R RPN7, 26S proteasome re 86.9 2.6 9E-05 39.6 9.1 97 372-468 133-236 (429)
263 3lpz_A GET4 (YOR164C homolog); 86.2 18 0.00061 32.2 22.3 83 437-539 133-215 (336)
264 1zbp_A Hypothetical protein VP 86.1 15 0.00052 31.3 14.5 53 380-433 7-59 (273)
265 4b4t_R RPN7, 26S proteasome re 85.4 7.6 0.00026 36.4 11.4 98 56-153 132-236 (429)
266 3esl_A Checkpoint serine/threo 84.4 10 0.00034 30.7 9.8 53 492-544 95-148 (202)
267 2y69_E Cytochrome C oxidase su 83.3 12 0.00041 27.8 9.0 41 393-433 76-116 (152)
268 2y69_E Cytochrome C oxidase su 82.1 9.4 0.00032 28.3 7.9 59 353-412 71-129 (152)
269 3esl_A Checkpoint serine/threo 77.0 28 0.00095 28.2 10.4 53 71-123 95-148 (202)
270 4b4t_S RPN3, 26S proteasome re 75.4 32 0.0011 32.8 11.5 65 55-119 231-299 (523)
271 3txn_A 26S proteasome regulato 75.4 50 0.0017 30.3 24.2 93 305-397 104-208 (394)
272 4a1g_A Mitotic checkpoint seri 73.7 28 0.00096 26.7 9.0 69 472-544 65-134 (152)
273 2wvi_A Mitotic checkpoint seri 73.4 30 0.001 26.9 9.1 69 472-544 60-129 (164)
274 4aez_C MAD3, mitotic spindle c 63.8 44 0.0015 27.5 8.6 69 472-544 114-183 (223)
275 3ltm_A Alpha-REP4; protein eng 62.3 61 0.0021 26.2 19.9 171 53-243 31-201 (211)
276 1oyz_A Hypothetical protein YI 61.1 79 0.0027 27.1 21.4 222 298-543 35-266 (280)
277 3mv2_A Coatomer subunit alpha; 60.7 88 0.003 27.5 12.9 20 484-504 216-235 (325)
278 4b4t_S RPN3, 26S proteasome re 60.6 36 0.0012 32.4 8.6 60 441-504 232-298 (523)
279 4a1g_A Mitotic checkpoint seri 59.4 57 0.002 25.0 9.8 50 109-158 84-134 (152)
280 3kae_A CDC27, possible protein 58.3 64 0.0022 25.2 11.3 79 380-469 12-91 (242)
281 1oyz_A Hypothetical protein YI 56.3 95 0.0033 26.6 22.6 218 263-504 35-262 (280)
282 1bpo_A Protein (clathrin); cla 54.9 84 0.0029 29.4 9.6 32 50-81 356-387 (494)
283 2wvi_A Mitotic checkpoint seri 52.9 79 0.0027 24.6 10.0 47 109-155 79-126 (164)
284 1bpo_A Protein (clathrin); cla 52.6 1.5E+02 0.0052 27.7 11.5 133 10-152 351-483 (494)
285 2w2u_A Hypothetical P60 katani 48.8 35 0.0012 22.8 4.8 17 522-538 30-46 (83)
286 4aez_C MAD3, mitotic spindle c 48.5 1E+02 0.0036 25.4 8.4 50 108-157 132-182 (223)
287 3ltm_A Alpha-REP4; protein eng 48.4 1.1E+02 0.0036 24.7 18.9 121 124-257 63-183 (211)
288 2d2s_A Exocyst complex compone 47.9 85 0.0029 26.3 8.1 24 25-48 23-46 (235)
289 4gq2_M Nucleoporin NUP120; bet 47.7 2.3E+02 0.0079 29.9 13.2 48 127-174 899-950 (950)
290 2v6y_A AAA family ATPase, P60 46.1 40 0.0014 22.5 4.8 17 522-538 22-38 (83)
291 3ubw_A 14-3-3E, 14-3-3 protein 45.0 1.4E+02 0.0049 25.3 12.3 61 337-397 33-94 (261)
292 2crb_A Nuclear receptor bindin 43.9 42 0.0014 22.8 4.4 26 513-538 17-42 (97)
293 1ya0_A SMG-7 transcript varian 42.5 1.9E+02 0.0066 27.5 10.6 79 372-452 154-232 (497)
294 1ya0_A SMG-7 transcript varian 42.5 1.6E+02 0.0055 28.1 10.1 79 406-486 153-231 (497)
295 2uwj_G Type III export protein 42.1 86 0.0029 21.9 7.7 88 33-129 19-106 (115)
296 3ltj_A Alpharep-4; protein eng 42.1 1.3E+02 0.0044 23.9 18.1 60 439-504 120-179 (201)
297 3eyy_A Putative iron uptake re 41.3 93 0.0032 23.5 6.9 59 10-70 9-67 (145)
298 2p58_C Putative type III secre 40.8 91 0.0031 21.8 8.4 88 33-129 20-107 (116)
299 2ijq_A Hypothetical protein; s 40.3 1.2E+02 0.004 23.5 7.1 52 417-468 44-103 (161)
300 2fe3_A Peroxide operon regulat 40.0 1.2E+02 0.0041 22.9 8.3 58 11-69 13-70 (145)
301 2ijq_A Hypothetical protein; s 38.7 1.4E+02 0.0046 23.2 8.0 52 312-363 44-103 (161)
302 3bu8_A Telomeric repeat-bindin 37.8 84 0.0029 25.6 6.0 77 36-113 88-171 (235)
303 2ynq_A ESSB; membrane protein, 35.7 1.5E+02 0.0051 22.8 7.4 20 517-536 79-98 (161)
304 2d2s_A Exocyst complex compone 35.2 2E+02 0.0067 24.0 9.6 29 439-467 90-118 (235)
305 1mzb_A Ferric uptake regulatio 34.9 1.2E+02 0.0041 22.5 6.6 57 12-69 10-67 (136)
306 3mkr_B Coatomer subunit alpha; 34.1 2.4E+02 0.0083 24.8 13.3 23 482-505 205-227 (320)
307 2ion_A PDCD4, programmed cell 33.5 1.6E+02 0.0054 22.5 7.0 25 23-47 12-36 (152)
308 2rpa_A Katanin P60 ATPase-cont 33.1 35 0.0012 22.5 2.8 25 515-539 16-40 (78)
309 4ets_A Ferric uptake regulatio 32.4 69 0.0023 24.9 5.0 48 128-175 35-84 (162)
310 2w57_A Ferric uptake regulatio 32.4 1.3E+02 0.0044 22.9 6.5 59 11-70 8-67 (150)
311 3iqu_A 14-3-3 protein sigma; s 32.4 2.2E+02 0.0075 23.7 11.6 61 337-397 10-71 (236)
312 3bqo_A Telomeric repeat-bindin 32.1 88 0.003 25.1 5.3 19 64-82 126-144 (211)
313 2b7e_A PRE-mRNA processing pro 32.1 45 0.0016 20.5 2.9 33 2-34 3-36 (59)
314 1wfd_A Hypothetical protein 15 31.7 89 0.003 21.4 4.8 13 492-504 12-24 (93)
315 4ets_A Ferric uptake regulatio 31.5 80 0.0027 24.5 5.2 57 49-106 27-85 (162)
316 3ltj_A Alpharep-4; protein eng 30.0 2.1E+02 0.0071 22.7 20.0 80 18-105 26-105 (201)
317 2fe3_A Peroxide operon regulat 29.0 1.8E+02 0.0063 21.8 7.0 11 423-433 39-49 (145)
318 2f6m_A Suppressor protein STP2 27.7 57 0.0019 20.5 2.9 45 23-68 5-49 (65)
319 2xig_A Ferric uptake regulatio 27.7 2E+02 0.0068 21.8 7.7 45 61-105 32-76 (150)
320 2v6x_A Vacuolar protein sortin 26.8 1.2E+02 0.0042 20.2 4.8 16 523-538 25-40 (85)
321 2nsz_A Programmed cell death p 26.2 2E+02 0.0067 21.2 8.3 62 23-85 10-73 (129)
322 2o03_A Probable zinc uptake re 25.3 1.3E+02 0.0045 22.1 5.3 45 25-69 15-59 (131)
323 3ax2_A Mitochondrial import re 25.3 1.1E+02 0.0039 19.8 4.1 29 516-544 22-50 (73)
324 1mzb_A Ferric uptake regulatio 24.8 2E+02 0.007 21.2 6.3 14 421-434 34-47 (136)
325 3eu9_A Huntingtin-interacting 24.6 2.8E+02 0.0096 22.4 9.1 48 30-79 16-63 (240)
326 4a5x_A MITD1, MIT domain-conta 24.0 1.4E+02 0.0047 20.1 4.5 17 522-538 27-43 (86)
327 4gq2_M Nucleoporin NUP120; bet 24.0 6.5E+02 0.022 26.5 13.0 47 442-488 899-949 (950)
328 2cpt_A SKD1 protein, vacuolar 24.0 1.2E+02 0.004 22.0 4.5 17 523-539 30-46 (117)
329 3ubw_A 14-3-3E, 14-3-3 protein 23.1 3.5E+02 0.012 23.0 12.0 61 56-116 32-93 (261)
330 4b4t_O 26S proteasome regulato 23.0 4E+02 0.014 24.4 9.1 23 375-397 132-154 (393)
331 2r9g_A AAA ATPase, central reg 22.6 3.1E+02 0.01 22.2 9.6 99 229-328 10-116 (204)
332 2f6m_A Suppressor protein STP2 22.4 1.2E+02 0.0041 19.1 3.6 41 95-136 7-47 (65)
333 3eyy_A Putative iron uptake re 22.0 1.9E+02 0.0064 21.8 5.6 43 131-174 24-66 (145)
334 3mwm_A ZUR, putative metal upt 21.9 1.1E+02 0.0039 22.8 4.4 45 25-69 18-62 (139)
335 3bqo_A Telomeric repeat-bindin 21.9 78 0.0027 25.4 3.3 19 484-503 126-144 (211)
336 3bge_A Predicted ATPase; struc 21.9 3.1E+02 0.011 22.0 8.3 23 242-264 19-41 (201)
337 2w57_A Ferric uptake regulatio 21.7 2.1E+02 0.0073 21.6 5.9 11 423-433 35-45 (150)
338 3kae_A CDC27, possible protein 21.4 3E+02 0.01 21.6 13.8 50 64-119 42-91 (242)
339 3ctd_A Putative ATPase, AAA fa 20.7 3.5E+02 0.012 22.1 8.9 23 242-264 47-69 (213)
340 3t5v_B Nuclear mRNA export pro 20.6 1.7E+02 0.0057 27.5 6.0 62 442-504 178-248 (455)
341 2zu6_B Programmed cell death p 20.5 4.3E+02 0.015 23.1 9.6 231 24-258 7-269 (307)
342 3mwm_A ZUR, putative metal upt 20.4 1.2E+02 0.0041 22.7 4.2 45 130-174 18-62 (139)
343 3t5v_B Nuclear mRNA export pro 20.4 2.1E+02 0.0072 26.9 6.6 26 374-399 180-205 (455)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-42 Score=352.73 Aligned_cols=503 Identities=10% Similarity=0.016 Sum_probs=404.6
Q ss_pred HcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 038622 32 KAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALS 111 (587)
Q Consensus 32 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 111 (587)
..|.+..+...+..+. .+++..|..++..+.+.|++++|+.+|+++... .|+...+..++.+|.+.|++++|+.
T Consensus 65 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 65 TDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHH
Confidence 3444555555554433 357788999999999999999999999999865 4466788889999999999999999
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC---------------CCCCCcccHHHHHHHHHhcCCH
Q 038622 112 FIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQE---------------GFDPDVFTYNSLISGLCKLGEV 176 (587)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~ 176 (587)
+|+++... +++..++..++.+|.+.|++++|+++|+++... +.+++..++..++.+|.+.|++
T Consensus 139 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 216 (597)
T 2xpi_A 139 LLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF 216 (597)
T ss_dssp HHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCH
Confidence 99988654 678889999999999999999999999853221 1223467899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHH---HHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHH
Q 038622 177 EEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATEL---ARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELF 253 (587)
Q Consensus 177 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 253 (587)
++|+++|+++...+ +.+...+..++..+...+..+.+... +..+...+..+...++..++..|.+.|++++|.++|
T Consensus 217 ~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 295 (597)
T 2xpi_A 217 DRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYL 295 (597)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHH
Confidence 99999999998875 44666777776666554433322211 333333333334445566677888899999999999
Q ss_pred HHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC
Q 038622 254 QEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISR 333 (587)
Q Consensus 254 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 333 (587)
+++.+. +++..++..++..+...|++++|+.+|+++...+ +.+..++..++.++...|++++|..+++++.... +.
T Consensus 296 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 371 (597)
T 2xpi_A 296 SSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PE 371 (597)
T ss_dssp HTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT
T ss_pred HHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cc
Confidence 998876 6789999999999999999999999999998876 5577889999999999999999999999998765 66
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHH
Q 038622 334 NSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIG 413 (587)
Q Consensus 334 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 413 (587)
+..++..++.+|.+.|++++|..+|+++.... +.+..++..++.++...|++++|..+|+++.+.++ .+..++..++.
T Consensus 372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~ 449 (597)
T 2xpi_A 372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGM 449 (597)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHH
Confidence 78899999999999999999999999998853 33677899999999999999999999999998644 37788999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCC--HHHHHHHHHHHHh
Q 038622 414 GLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEK----ADPPD--ALTYKHVFRGLCN 487 (587)
Q Consensus 414 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~ 487 (587)
+|...|++++|.++|+++.+..+. +..+|..++..+.+.|++++|+++|+++++. +..|+ ...+..++..+..
T Consensus 450 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 528 (597)
T 2xpi_A 450 QHMQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK 528 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH
Confidence 999999999999999999987544 6789999999999999999999999999885 44666 6789999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCc-hhhhhh
Q 038622 488 GGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDR-ETSMVR 552 (587)
Q Consensus 488 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~ 552 (587)
.|+ +++|++.++++++.+ +.++.++..++.+|.+.|++++|.+.++++++.+|.+.. +..++.
T Consensus 529 ~g~-~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~ 592 (597)
T 2xpi_A 529 LKM-YDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKR 592 (597)
T ss_dssp TTC-HHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hcC-HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 999 999999999999854 338999999999999999999999999999999998743 344433
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1e-42 Score=353.07 Aligned_cols=491 Identities=12% Similarity=0.030 Sum_probs=418.5
Q ss_pred CCCHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHH
Q 038622 17 KPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVL 96 (587)
Q Consensus 17 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 96 (587)
.++...|+.++..|.+.|++++|+.+|+++.+. .|+..++..++.++...|++++|+.+|+++... +.+..++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l 156 (597)
T 2xpi_A 81 LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLA 156 (597)
T ss_dssp -CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHH
Confidence 467889999999999999999999999999865 578889999999999999999999999998654 6788899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC---------------CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcc
Q 038622 97 VHGFCKEGRIEDALSFIQEMVSE---------------GFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVF 161 (587)
Q Consensus 97 ~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 161 (587)
+.+|.+.|++++|+.+|+++... +.+++..+|..++.+|.+.|++++|++.|+++.+.++ .+..
T Consensus 157 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~ 235 (597)
T 2xpi_A 157 AFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCYE 235 (597)
T ss_dssp HHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHH
T ss_pred HHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-hhhH
Confidence 99999999999999999853221 1233578899999999999999999999999998632 2445
Q ss_pred cHHHHHHHHHhcCCHHHHHH--H-HHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 038622 162 TYNSLISGLCKLGEVEEAVE--I-LNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQ 238 (587)
Q Consensus 162 ~~~~l~~~~~~~g~~~~a~~--~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 238 (587)
.+..++..+...+..+.+.. + +..+...+.......+..++..|.+.|++++|.++++++.+. +++..++..++.
T Consensus 236 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 313 (597)
T 2xpi_A 236 AFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKAD 313 (597)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHH
T ss_pred HHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHH
Confidence 55555555444433222211 1 444444333334445666788889999999999999998765 578999999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHH
Q 038622 239 GLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEE 318 (587)
Q Consensus 239 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 318 (587)
.+...|++++|.++|+++.+.+ +.+..++..++.++...|++++|..+++++.... +.+..++..++.+|.+.|++++
T Consensus 314 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 391 (597)
T 2xpi_A 314 TLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISE 391 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHH
Confidence 9999999999999999999875 5578889999999999999999999999998765 6788899999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038622 319 AEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTS 398 (587)
Q Consensus 319 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 398 (587)
|.++|+++.... +.+..+|..++.++.+.|++++|+.+|+++...+ +.+..++..++.+|...|++++|..+|+++.+
T Consensus 392 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 469 (597)
T 2xpi_A 392 ARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYA 469 (597)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999998865 5678899999999999999999999999999863 34778999999999999999999999999998
Q ss_pred CCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCC--hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 038622 399 NGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMK----GIVLT--PQAYNPVIQALFRRKRTTEAMRLFREMMEKADP 472 (587)
Q Consensus 399 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 472 (587)
..+. +..++..++.+|.+.|++++|.++|+++.+. +..|+ ..+|..++.++...|++++|++.++++++.+ |
T Consensus 470 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p 547 (597)
T 2xpi_A 470 LFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-T 547 (597)
T ss_dssp HCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-S
T ss_pred hCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-C
Confidence 6443 6788999999999999999999999999876 44666 6799999999999999999999999999975 7
Q ss_pred CCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHc
Q 038622 473 PDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVS 523 (587)
Q Consensus 473 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 523 (587)
.+..++..++..+...|+ +++|.+.++++++. .| ++..+..++.+|..
T Consensus 548 ~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 548 NDANVHTAIALVYLHKKI-PGLAITHLHESLAI--SPNEIMASDLLKRALEE 596 (597)
T ss_dssp CCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHTTC-
T ss_pred CChHHHHHHHHHHHHhCC-HHHHHHHHHHHHhc--CCCChHHHHHHHHHHhc
Confidence 789999999999999999 99999999999984 56 78888888887753
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=6.5e-32 Score=257.93 Aligned_cols=366 Identities=16% Similarity=0.081 Sum_probs=240.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCh
Q 038622 167 ISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNF 246 (587)
Q Consensus 167 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 246 (587)
+..+.+.|++++|++.++++.... |.+...+..++..+...|++++|...++...+.. +.+..++..++.++...|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 445556666666666666665554 3345555666666666666666666666665542 33556666666666666666
Q ss_pred HHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 038622 247 DVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEM 326 (587)
Q Consensus 247 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 326 (587)
++|...|+++.+.. |.+..++..++.++...|++++|+..|+++.+.+ |.+...+..++..+...|++++|...|+++
T Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 66666666666553 3345566666666667777777777776666654 444555666666666677777777777766
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcc
Q 038622 327 EIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIV 406 (587)
Q Consensus 327 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 406 (587)
.... |.+...|..++.++...|++++|...|++++... +.+...+..++..+...|++++|...++++....+. +..
T Consensus 162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~ 238 (388)
T 1w3b_A 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAV 238 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHH
Confidence 6654 4455666667777777777777777777776643 224456666667777777777777777776664322 455
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 038622 407 TYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLC 486 (587)
Q Consensus 407 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 486 (587)
++..++.++...|++++|.+.++++.+.++. ++.++..++.++...|++++|+..|+++++.. |.+...+..++..+.
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHH
Confidence 6666777777777777777777777765332 45667777777777777777777777777763 566667777777777
Q ss_pred hCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC
Q 038622 487 NGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS 544 (587)
Q Consensus 487 ~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 544 (587)
..|+ +++|+..++++++. .| +..++..++.+|.+.|++++|+..++++++..|..
T Consensus 317 ~~g~-~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~ 372 (388)
T 1w3b_A 317 EQGN-IEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF 372 (388)
T ss_dssp TTTC-HHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTC
T ss_pred HcCC-HHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 7777 77777777777763 34 56677777777777777777777777777776654
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=2.6e-31 Score=253.74 Aligned_cols=382 Identities=16% Similarity=0.083 Sum_probs=280.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCH
Q 038622 132 VNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQV 211 (587)
Q Consensus 132 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 211 (587)
+..+.+.|++++|++.++.+.+.. +.+...+..+...+...|++++|...++.+.... +.+..++..++.++...|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 344555666666666666655542 2234445555555666666666666666665554 44556666666666666666
Q ss_pred HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHH
Q 038622 212 EEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEM 291 (587)
Q Consensus 212 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 291 (587)
++|+..|+++.... +.+...+..++.++...|++++|.+.|+++.+.. |.+...+..++..+...|++++|+..|+++
T Consensus 84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 66666666666542 2245566667777777777777777777776653 334556667777777777777777777777
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHh
Q 038622 292 ESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKF 371 (587)
Q Consensus 292 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 371 (587)
.... |.+..++..++.++...|++++|...|+++...+ |.+...+..++..+...|++++|...+++++... +.+..
T Consensus 162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 238 (388)
T 1w3b_A 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAV 238 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHH
Confidence 7664 4556777777788888888888888888877765 5566777788888888888888888888887753 22466
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHH
Q 038622 372 TYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALF 451 (587)
Q Consensus 372 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 451 (587)
++..++.++...|++++|...++++++.++. +..++..++.++...|++++|.+.++++.+..+ .+...+..++..+.
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-THADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHH
Confidence 7778888888888888888888888875433 466788888889999999999999999888643 36788889999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCC
Q 038622 452 RRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGK 526 (587)
Q Consensus 452 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 526 (587)
..|++++|+..++++++.. |.+...+..++..+...|+ +++|+..++++++ +.| .+.++..++.++...|+
T Consensus 317 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~--~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 317 EQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGK-LQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTC-CHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTCC
T ss_pred HcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHh--hCCCCHHHHHhHHHHHHHccC
Confidence 9999999999999998864 6677888889999999999 9999999999997 456 68888999998887764
No 5
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.7e-28 Score=241.66 Aligned_cols=453 Identities=10% Similarity=0.009 Sum_probs=310.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 038622 55 ERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNG 134 (587)
Q Consensus 55 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 134 (587)
...+...+..+...|++++|+..|++++..+ |+...+..++.++...|++++|+..++++++.+ |.+..++..++.+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 4556667777777777777777777777764 356667777777777777777777777777653 4455667777777
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHH
Q 038622 135 LCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEA 214 (587)
Q Consensus 135 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 214 (587)
+...|++++|...|+++...+. ++......++..+........+.+.+..+......++...... ..
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~------~~------ 149 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQP------AK------ 149 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC--------------------------------
T ss_pred HHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCh------hh------
Confidence 7777777777777777776532 2333333333333332222222222222211111111100000 00
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHc---cCChHHHHHHHHHH
Q 038622 215 TELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCS---RGMLEEALKLLKEM 291 (587)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~ 291 (587)
... ......|+.......+ ......... .....+.+...+...+..+.. .|++++|+..++++
T Consensus 150 -~~~---~~~~~~~~~~~~~~~~----~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 215 (514)
T 2gw1_A 150 -ERK---DKQENLPSVTSMASFF----GIFKPELTF------ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKA 215 (514)
T ss_dssp -----------CCCCHHHHHHHH----TTSCCCCCC------SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHH
T ss_pred -HHH---hhccCCchhHHHHHHH----hhcCHHHHH------HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHH
Confidence 000 0000112221111111 110000000 000112335566666666665 88999999999998
Q ss_pred HH-----CCC--------CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038622 292 ES-----SGC--------ARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLM 358 (587)
Q Consensus 292 ~~-----~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 358 (587)
.. ... +.+..++..++.++...|++++|...++++.... +. ...+..++.++...|++++|...+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-~~-~~~~~~l~~~~~~~~~~~~A~~~~ 293 (514)
T 2gw1_A 216 ARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF-PR-VNSYIYMALIMADRNDSTEYYNYF 293 (514)
T ss_dssp HHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC-CC-HHHHHHHHHHHHTSSCCTTGGGHH
T ss_pred HHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-cc-HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 87 311 2234567888899999999999999999998876 33 888888999999999999999999
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 038622 359 DQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVL 438 (587)
Q Consensus 359 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 438 (587)
++++... +.+...+..++.++...|++++|...++++....+. +...+..++.++...|++++|...++++.+..+.
T Consensus 294 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~- 370 (514)
T 2gw1_A 294 DKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE- 370 (514)
T ss_dssp HHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-
T ss_pred HHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-
Confidence 9998853 336678888999999999999999999999986443 5778889999999999999999999999886433
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC------HHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCCC
Q 038622 439 TPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPD------ALTYKHVFRGLCN---GGGPIGEAVDFVIEMLERGFLP 509 (587)
Q Consensus 439 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~~---~~~~~~~A~~~~~~~~~~~~~p 509 (587)
+...+..++..+...|++++|...++++++.. +.+ ...+..++..+.. .|+ +++|...++++++. .|
T Consensus 371 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~A~~~~~~a~~~--~~ 446 (514)
T 2gw1_A 371 APEVPNFFAEILTDKNDFDKALKQYDLAIELE-NKLDGIYVGIAPLVGKATLLTRNPTVEN-FIEATNLLEKASKL--DP 446 (514)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HTSSSCSSCSHHHHHHHHHHHTSCCTTH-HHHHHHHHHHHHHH--CT
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh-hccchHHHHHHHHHHHHHHHhhhhhcCC-HHHHHHHHHHHHHh--Cc
Confidence 56889999999999999999999999998852 222 2377788888888 898 99999999999985 45
Q ss_pred -CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCc
Q 038622 510 -EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDR 546 (587)
Q Consensus 510 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 546 (587)
+..++..++.+|...|++++|...++++++..|.+..
T Consensus 447 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 484 (514)
T 2gw1_A 447 RSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEE 484 (514)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHH
T ss_pred ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHH
Confidence 7889999999999999999999999999999997643
No 6
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.8e-27 Score=236.74 Aligned_cols=447 Identities=11% Similarity=-0.021 Sum_probs=228.3
Q ss_pred HhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 038622 20 VSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHG 99 (587)
Q Consensus 20 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 99 (587)
+..|..+...+.+.|++++|+..|+++.+.+ |++.++..++.++...|++++|+..++++++.+ |.+..++..++.+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 4578888999999999999999999999875 689999999999999999999999999999986 6678899999999
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHH
Q 038622 100 FCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEA 179 (587)
Q Consensus 100 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 179 (587)
+...|++++|...|+++...+ +++......++..+........+.+.+..+...+..|+....................
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV 161 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence 999999999999999999875 4454554555544444333333333333222221111111100000000000000000
Q ss_pred HHHHHHHHhCCC---------CCChhhHHHHHHHHhc---cCCHHHHHHHHHHHHh-----CCCCCCHhhHHHHHHHHHh
Q 038622 180 VEILNQMILRDC---------SPNTITYNTLISTLCK---ENQVEEATELARVLTS-----KGILPDVCTFNSLIQGLCL 242 (587)
Q Consensus 180 ~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~ 242 (587)
..+...+..... +.+...+...+..+.. .|++++|...++++.. ....|+....
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~--------- 232 (514)
T 2gw1_A 162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKL--------- 232 (514)
T ss_dssp HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHH---------
T ss_pred HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCcccccc---------
Confidence 000000000000 1112333333333332 4555555555555444 1000000000
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 038622 243 TSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEI 322 (587)
Q Consensus 243 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 322 (587)
.+.+..++..++..+...|++++|+..++++.... +. ...+..++.++...|++++|...
T Consensus 233 ------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-~~-~~~~~~l~~~~~~~~~~~~A~~~ 292 (514)
T 2gw1_A 233 ------------------KEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF-PR-VNSYIYMALIMADRNDSTEYYNY 292 (514)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC-CC-HHHHHHHHHHHHTSSCCTTGGGH
T ss_pred ------------------ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-cc-HHHHHHHHHHHHHCCCHHHHHHH
Confidence 01112334444444444455555555554444433 11 44444444444455555555555
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 038622 323 FDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCE 402 (587)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 402 (587)
++++.... +.+...+..++.++...|++++|...+++++... +.+...+..++.++...|++++|...++++.+..+.
T Consensus 293 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 370 (514)
T 2gw1_A 293 FDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE 370 (514)
T ss_dssp HHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 54444432 3334444444455555555555555555554432 113334444445555555555555555554443211
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-C----hHhHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCC
Q 038622 403 PDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVL-T----PQAYNPVIQALFR---RKRTTEAMRLFREMMEKADPPD 474 (587)
Q Consensus 403 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~ 474 (587)
+...+..++.++...|++++|...++++....+.. . ...+..++.++.. .|++++|...++++++.. +.+
T Consensus 371 -~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~ 448 (514)
T 2gw1_A 371 -APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRS 448 (514)
T ss_dssp -CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTC
T ss_pred -CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-ccc
Confidence 33444455555555555555555555554431110 0 1245555555555 555555555555555542 334
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 038622 475 ALTYKHVFRGLCNGGGPIGEAVDFVIEMLE 504 (587)
Q Consensus 475 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 504 (587)
...+..++..+...|+ +++|...++++++
T Consensus 449 ~~~~~~la~~~~~~g~-~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 449 EQAKIGLAQMKLQQED-IDEAITLFEESAD 477 (514)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC-HHHHHHHHHHHHH
Confidence 4444555555555555 5555555555555
No 7
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.97 E-value=2.6e-26 Score=229.58 Aligned_cols=441 Identities=12% Similarity=0.066 Sum_probs=214.1
Q ss_pred hhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 038622 21 STFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGF 100 (587)
Q Consensus 21 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 100 (587)
..|..+...+.+.|++++|+..|+.+.+.. |.++.++..++.++...|++++|+..++++++.+ |.+...+..++.++
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 455566666666666666666666666654 5566666666666666666666666666666654 44556666666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCCcccHHHHHHHHHhcCCHHH
Q 038622 101 CKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGF--DPDVFTYNSLISGLCKLGEVEE 178 (587)
Q Consensus 101 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~ 178 (587)
...|++++|+..|+ .... .|+. ....+..+...+...+|...++.+....+ .+........+..+....+.+.
T Consensus 104 ~~~g~~~~A~~~~~-~~~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHcCCHHHHHHHHH-HHhc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 66666666666664 3322 1221 11122233334444566666666654310 0011111223333444444444
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038622 179 AVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKT 258 (587)
Q Consensus 179 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 258 (587)
+...+....... +........+...+...+ .......+++++|..+|+++.+
T Consensus 179 ~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~---------------------------~~~~~a~~~~~~A~~~~~~~l~ 230 (537)
T 3fp2_A 179 EVSSVNTSSNYD-TAYALLSDALQRLYSATD---------------------------EGYLVANDLLTKSTDMYHSLLS 230 (537)
T ss_dssp HHHTSCCCCSSC-SSHHHHHHHHHHHHTCSH---------------------------HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhhccccc-cHHHHHHHHHHHHHHhhh---------------------------hhhHHHHHHHHHHHHHHHHHHH
Confidence 433332221111 000111112222211110 0000111244445555554444
Q ss_pred cCCCCCH-------HhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 038622 259 KGCQPDE-------FTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGI 331 (587)
Q Consensus 259 ~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 331 (587)
.. +.+. .++..++..+...|++++|+..++++.... |+...+..++.++...|++++|...++++....
T Consensus 231 ~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 306 (537)
T 3fp2_A 231 AN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN- 306 (537)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-
T ss_pred HC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-
Confidence 32 1111 123444445555555555555555555543 224455555555555555555555555555443
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHH
Q 038622 332 SRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTL 411 (587)
Q Consensus 332 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 411 (587)
|.+..++..++..+...|++++|...+++++... +.+...+..++.++...|++++|...++++.+..+. +...+..+
T Consensus 307 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l 384 (537)
T 3fp2_A 307 PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFF 384 (537)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHH
Confidence 3344555555555555555555555555555532 123344555555555555555555555555554222 34455555
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCC-----CChHhHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCCHH
Q 038622 412 IGGLCKAGRVEVASKLLRSIQMKGIV-----LTPQAYNPVIQALFRR----------KRTTEAMRLFREMMEKADPPDAL 476 (587)
Q Consensus 412 ~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~ 476 (587)
+.++...|++++|...++++.+..+. .....+...+.++... |++++|+..|+++++.. |.+..
T Consensus 385 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~ 463 (537)
T 3fp2_A 385 AEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQ 463 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHH
Confidence 55555566666666655555443111 1112234444555555 66666666666666553 44555
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 038622 477 TYKHVFRGLCNGGGPIGEAVDFVIEMLE 504 (587)
Q Consensus 477 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 504 (587)
.+..++..+...|+ +++|.+.++++++
T Consensus 464 ~~~~l~~~~~~~g~-~~~A~~~~~~al~ 490 (537)
T 3fp2_A 464 AKIGLAQLKLQMEK-IDEAIELFEDSAI 490 (537)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-HHHHHHHHHHHHH
Confidence 55566666666666 6666666666665
No 8
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.96 E-value=4.8e-26 Score=227.62 Aligned_cols=448 Identities=13% Similarity=0.092 Sum_probs=315.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 038622 55 ERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNG 134 (587)
Q Consensus 55 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 134 (587)
...+..++..+.+.|++++|+..|++++..+ |.+...+..++.++...|++++|+..++++++.+ |.+..++..++.+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 4567778888888888888888888888875 5677888888888888888888888888888764 5567778888888
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCChhhHHHHHHHHhccCCHH
Q 038622 135 LCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDC--SPNTITYNTLISTLCKENQVE 212 (587)
Q Consensus 135 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~ 212 (587)
+...|++++|+..|+ .... .|+.. ...+..+...+....|...++.+..... .+........+..+....+.+
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~--~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSL--NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHH-HHhc--CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 888888888888886 3332 22211 1123334444555667777777654310 000001112222233333333
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHH
Q 038622 213 EATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEME 292 (587)
Q Consensus 213 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 292 (587)
.+...+...... .+. +..+... +..+... +. .......|++++|+..++++.
T Consensus 178 ~~~~~~~~~~~~--~~~---~~~~~~~-------------l~~~~~~----~~------~~~~~a~~~~~~A~~~~~~~l 229 (537)
T 3fp2_A 178 LEVSSVNTSSNY--DTA---YALLSDA-------------LQRLYSA----TD------EGYLVANDLLTKSTDMYHSLL 229 (537)
T ss_dssp HHHHTSCCCCSS--CSS---HHHHHHH-------------HHHHHTC----SH------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccc--ccH---HHHHHHH-------------HHHHHHh----hh------hhhHHHHHHHHHHHHHHHHHH
Confidence 333222111110 000 0000000 0000000 00 011122357899999999998
Q ss_pred HCCCCCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 038622 293 SSGCARNV-------VTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEG 365 (587)
Q Consensus 293 ~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 365 (587)
+.. |.+. .++..++..+...|++++|...++++.... |+...+..++..+...|++++|...+++++...
T Consensus 230 ~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 306 (537)
T 3fp2_A 230 SAN-TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN 306 (537)
T ss_dssp C---CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC
T ss_pred HHC-CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC
Confidence 865 3333 346777888899999999999999998875 448889999999999999999999999999864
Q ss_pred CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHH
Q 038622 366 LKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNP 445 (587)
Q Consensus 366 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 445 (587)
+.+..++..++.++...|++++|...++++.+..+. +...+..++.++...|++++|..+++++.+..+. +...+..
T Consensus 307 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~ 383 (537)
T 3fp2_A 307 -PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTF 383 (537)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHH
T ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHH
Confidence 346778999999999999999999999999986443 5678999999999999999999999999987543 5778999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCC-----CCCHHHHHHHHHHHHhC----------CCCHHHHHHHHHHHHHcCCCC-
Q 038622 446 VIQALFRRKRTTEAMRLFREMMEKAD-----PPDALTYKHVFRGLCNG----------GGPIGEAVDFVIEMLERGFLP- 509 (587)
Q Consensus 446 l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~----------~~~~~~A~~~~~~~~~~~~~p- 509 (587)
++.++...|++++|+..|+++++... ......+...+..+... |+ +++|+..++++++. .|
T Consensus 384 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~A~~~~~~a~~~--~p~ 460 (537)
T 3fp2_A 384 FAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEK-FNAAIKLLTKACEL--DPR 460 (537)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHH-HHHHHHHHHHHHHH--CTT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhH-HHHHHHHHHHHHHh--CCC
Confidence 99999999999999999999987421 11222344556667777 88 99999999999985 45
Q ss_pred CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCc
Q 038622 510 EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDR 546 (587)
Q Consensus 510 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 546 (587)
+..++..++.+|...|++++|+..++++++..|..+.
T Consensus 461 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 497 (537)
T 3fp2_A 461 SEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDE 497 (537)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 7899999999999999999999999999999998754
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.96 E-value=6.4e-26 Score=221.29 Aligned_cols=352 Identities=13% Similarity=0.057 Sum_probs=231.4
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 038622 159 DVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQ 238 (587)
Q Consensus 159 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 238 (587)
+...+..++..+...|++++|+.+|+++.... +.+..++..++.++...|++++|+..++++.+.+ +.+...+..++.
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 34455555566666666666666666655543 3345555556666666666666666666555542 224455555555
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCCH---HhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 038622 239 GLCLTSNFDVAMELFQEMKTKGCQPDE---FTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKR 315 (587)
Q Consensus 239 ~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 315 (587)
++...|++++|...|+++.+.. +.+. ..+..++..+.. ..+..++..+...|+
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGSGD 158 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTC
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHcCC
Confidence 5555566666666665555442 2222 333333222100 011223445666777
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 038622 316 IEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQN 395 (587)
Q Consensus 316 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 395 (587)
+++|+..|+++.... |.+...+..++.++...|++++|...++++.... +.+..++..++.++...|++++|...+++
T Consensus 159 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 236 (450)
T 2y4t_A 159 YTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRE 236 (450)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777777777776654 4566667777777777777777777777776642 23566677777777777777777777777
Q ss_pred HHHCCCCCCcchHHH------------HHHHHHhcCChHHHHHHHHHHHHcCCCCC----hHhHHHHHHHHHhcCCHHHH
Q 038622 396 MTSNGCEPDIVTYGT------------LIGGLCKAGRVEVASKLLRSIQMKGIVLT----PQAYNPVIQALFRRKRTTEA 459 (587)
Q Consensus 396 ~~~~~~~~~~~~~~~------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A 459 (587)
+....+. +...+.. ++..+...|++++|..+++++.+..+. + ...+..++.++...|++++|
T Consensus 237 ~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A 314 (450)
T 2y4t_A 237 CLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEA 314 (450)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHH
Confidence 7664222 2233333 378888999999999999999885332 2 34678889999999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHH------------HHHHccC-
Q 038622 460 MRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLA------------EGLVSLG- 525 (587)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~------------~~~~~~g- 525 (587)
+..++++++.. |.+...+..++.++...|+ +++|...++++++ +.| ++.++..++ ..|...|
T Consensus 315 ~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~ 390 (450)
T 2y4t_A 315 IRVCSEVLQME-PDNVNALKDRAEAYLIEEM-YDEAIQDYETAQE--HNENDQQIREGLEKAQRLLKQSQKRDYYKILGV 390 (450)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHT--TSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCS
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHhcC-HHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHhhcccchhHHHHhCC
Confidence 99999998864 6678888899999999999 9999999999998 456 677888777 3455556
Q ss_pred ----CHhHHHHHHHH-HHhcCCCC
Q 038622 526 ----KEETLVELIDM-VMDKAKFS 544 (587)
Q Consensus 526 ----~~~~A~~~~~~-~~~~~~~~ 544 (587)
+.+++.+.+++ +++..|++
T Consensus 391 ~~~~~~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 391 KRNAKKQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp STTCCTTHHHHHHHHHHHHSCGGG
T ss_pred CccCCHHHHHHHHHHHHHHhCCCC
Confidence 67788999987 77777765
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.96 E-value=1.4e-25 Score=218.78 Aligned_cols=314 Identities=13% Similarity=0.083 Sum_probs=193.1
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 038622 7 AHADMVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGC 86 (587)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 86 (587)
.+.+++... |.+...|..++..+.+.|++++|+..|+.+.+.. +.++.++..++.++...|++++|+..++++.+.+
T Consensus 14 ~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~- 90 (450)
T 2y4t_A 14 GTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK- 90 (450)
T ss_dssp ----------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred ccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-
Confidence 344444443 5667778888888888888888888888887664 5677788888888888888888888888888775
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh---hhHHHH------------HHHHHhcCChHHHHHHHHHH
Q 038622 87 LVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQ---FTYNTL------------VNGLCKVGHVKQALEVMDMM 151 (587)
Q Consensus 87 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~ 151 (587)
|.+..++..++.+|...|++++|...|+++.+.+ +.+. ..+..+ +..+...|++++|+..|+.+
T Consensus 91 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 169 (450)
T 2y4t_A 91 MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKI 169 (450)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5567777788888888888888888888887753 3233 444444 33366666777777777666
Q ss_pred HhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHh
Q 038622 152 LQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVC 231 (587)
Q Consensus 152 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 231 (587)
.+.. +.+..++..++.++...|++++|+.+|+++...+ +.+..++..++.++...|++++|+..++++.... +.+..
T Consensus 170 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~ 246 (450)
T 2y4t_A 170 LEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKR 246 (450)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHH
Confidence 6542 2245566666666666677777776666666553 3455666666666666666666666666666542 11233
Q ss_pred hHHHH------------HHHHHhcCChHHHHHHHHHHHHcCCCCC----HHhHHHHHHHHHccCChHHHHHHHHHHHHCC
Q 038622 232 TFNSL------------IQGLCLTSNFDVAMELFQEMKTKGCQPD----EFTYNMLIDSLCSRGMLEEALKLLKEMESSG 295 (587)
Q Consensus 232 ~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 295 (587)
.+..+ +..+...|++++|...|+++.+.. +.+ ...+..++.++...|++++|+..++++....
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 325 (450)
T 2y4t_A 247 CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME 325 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 33322 455555566666666665555542 112 2244555555555555555555555555443
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 038622 296 CARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQ 329 (587)
Q Consensus 296 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 329 (587)
+.+..++..++.++...|++++|...++++.+.
T Consensus 326 -p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 326 -PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred -cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 334555555555555555555555555555544
No 11
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.94 E-value=2.6e-23 Score=196.30 Aligned_cols=329 Identities=11% Similarity=0.057 Sum_probs=219.3
Q ss_pred hhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 038622 195 TITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDS 274 (587)
Q Consensus 195 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 274 (587)
+..+..++..+...|++++|+..++++.+.. +.+...+..++.++...|++++|...++++.+.. +.+...+..++.+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 3445556666666666666666666665542 2245555566666666666666666666665543 3345555666666
Q ss_pred HHccCChHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 038622 275 LCSRGMLEEALKLLKEMESSGCA---RNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRV 351 (587)
Q Consensus 275 ~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 351 (587)
+...|++++|+..++++.+.. + .+...+..+..... ...+..++..+...|++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 666666666666666665543 2 12222222211100 01122235667777888
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 038622 352 EDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSI 431 (587)
Q Consensus 352 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 431 (587)
++|...++++.... +.+...+..++.++...|++++|...++++....+. +...+..++.++...|++++|...++++
T Consensus 137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888888877753 335667777777888888888888888887775332 5667777888888888888888888888
Q ss_pred HHcCCCCChHhHH------------HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH----HHHHHHHHHHhCCCCHHHH
Q 038622 432 QMKGIVLTPQAYN------------PVIQALFRRKRTTEAMRLFREMMEKADPPDAL----TYKHVFRGLCNGGGPIGEA 495 (587)
Q Consensus 432 ~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~~A 495 (587)
.+..+. +...+. .++..+...|++++|+..++++++.. +.+.. .+..++..+...|+ +++|
T Consensus 215 ~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~-~~~A 291 (359)
T 3ieg_A 215 LKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEK-PVEA 291 (359)
T ss_dssp HHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTC-HHHH
T ss_pred HhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccC-HHHH
Confidence 775332 333332 34777889999999999999999864 44443 24457778889999 9999
Q ss_pred HHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCc-hhhhhhhHHH
Q 038622 496 VDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDR-ETSMVRGFLK 556 (587)
Q Consensus 496 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~~ 556 (587)
+..++++++. .| ++.++..++.++...|++++|...++++++..|.+.. +..+..++..
T Consensus 292 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 292 IRICSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 9999999985 45 7899999999999999999999999999999998643 4444444333
No 12
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=9.2e-26 Score=217.79 Aligned_cols=202 Identities=14% Similarity=0.178 Sum_probs=103.8
Q ss_pred HHHHHHHHhCCCCCCH-hhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCC---------hhHH
Q 038622 5 ETAHADMVSRGIKPDV-STFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGN---------LDGA 74 (587)
Q Consensus 5 ~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~~~A 74 (587)
+.+...+.+.++.+.+ ..++.+|+.|++.|++++|.++|++|.+.|++||..+|+.++.+|.+.+. ++.|
T Consensus 10 e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A 89 (501)
T 4g26_A 10 ENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRG 89 (501)
T ss_dssp --------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHH
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHH
Confidence 3445555555544433 34566666777777777777777777666666777777777666665443 3445
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 038622 75 LRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQE 154 (587)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 154 (587)
.++|++|...|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.
T Consensus 90 ~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~ 169 (501)
T 4g26_A 90 FDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES 169 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHh
Q 038622 155 GFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLC 206 (587)
Q Consensus 155 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 206 (587)
|+.||..+|+.++.+|++.|++++|.++|++|.+.+..|+..++..+...+.
T Consensus 170 G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 170 EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 5555555555555555555555555555555555554555555554444443
No 13
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.94 E-value=2.6e-25 Score=214.61 Aligned_cols=202 Identities=16% Similarity=0.245 Sum_probs=127.1
Q ss_pred HHHHHHHHcCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC---------hHHHH
Q 038622 76 RIREQMVEHGCLVTN-VTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGH---------VKQAL 145 (587)
Q Consensus 76 ~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a~ 145 (587)
.+.+.+.+.+...++ ..++.++.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.+. +++|.
T Consensus 11 ~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~ 90 (501)
T 4g26_A 11 NLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGF 90 (501)
T ss_dssp -------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHH
T ss_pred HHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHH
Confidence 334444444433333 24556666777777777777777777777777777777777776665443 45666
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCC
Q 038622 146 EVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKG 225 (587)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 225 (587)
++|++|...|+.||..+|+.++.+|++.|++++|.++|++|...|+.|+..+|+.++.+|++.|++++|.+++++|.+.|
T Consensus 91 ~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G 170 (501)
T 4g26_A 91 DIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESE 170 (501)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHc
Q 038622 226 ILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCS 277 (587)
Q Consensus 226 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 277 (587)
+.||..+|+.++.+|.+.|++++|.+++++|.+.+..|+..||..+...+..
T Consensus 171 ~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 171 VVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 6666666666666666666666666666666666666666666666665543
No 14
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.94 E-value=1.2e-21 Score=192.50 Aligned_cols=354 Identities=13% Similarity=0.032 Sum_probs=219.2
Q ss_pred CcccHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCCCCH
Q 038622 159 DVFTYNSLISGLCK----LGEVEEAVEILNQMILRDCSPNTITYNTLISTLCK----ENQVEEATELARVLTSKGILPDV 230 (587)
Q Consensus 159 ~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 230 (587)
++.....+...|.. .+++++|+.+|++....+ ++.++..|+..|.. .+++++|..+|++..+.+ ++
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 34444445555544 555555555555555543 44455555555555 555666666665555543 44
Q ss_pred hhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHc----cCChHHHHHHHHHHHHCCCCCCHHH
Q 038622 231 CTFNSLIQGLCL----TSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCS----RGMLEEALKLLKEMESSGCARNVVT 302 (587)
Q Consensus 231 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 302 (587)
..+..+...|.. .+++++|..+|++..+.+ ++..+..++..|.. .+++++|+++|+++.+.+ +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 445555555555 556666666666665543 44555556655554 556666666666666543 4555
Q ss_pred HHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHhhHH
Q 038622 303 YNTLIDGFCK----LKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCK----SRRVEDAAQLMDQMIMEGLKPDKFTYN 374 (587)
Q Consensus 303 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~ 374 (587)
+..++..|.. .+++++|...|++....+ ++..+..+...|.. .+++++|..+|+++.+.+ +...+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 259 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQF 259 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 6666666665 566666666666666543 44455556666654 566777777777766542 344555
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCChHhHHH
Q 038622 375 SLLTYYCR----AGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKA-----GRVEVASKLLRSIQMKGIVLTPQAYNP 445 (587)
Q Consensus 375 ~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~ 445 (587)
.+...+.. .+++++|...|++..+.+ +...+..++..|... +++++|..+++++.+.+ +...+..
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 333 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQAN 333 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHH
Confidence 56666665 667777777777766542 345566666666665 67777777777777642 4456667
Q ss_pred HHHHHHhcC---CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038622 446 VIQALFRRK---RTTEAMRLFREMMEKADPPDALTYKHVFRGLCN----GGGPIGEAVDFVIEMLERGFLPEFSSFYMLA 518 (587)
Q Consensus 446 l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 518 (587)
++..+...| ++++|+++|+++.+.+ +...+..++..+.. .++ +++|+.+++++.+.+ ++.++..|+
T Consensus 334 lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~-~~~A~~~~~~A~~~~---~~~a~~~Lg 406 (490)
T 2xm6_A 334 LGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKD-EQQAAIWMRKAAEQG---LSAAQVQLG 406 (490)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC-HHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCC-HHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 777776655 6777777777777643 45566666666666 556 777777777777643 566777777
Q ss_pred HHHHc----cCCHhHHHHHHHHHHhcCCC
Q 038622 519 EGLVS----LGKEETLVELIDMVMDKAKF 543 (587)
Q Consensus 519 ~~~~~----~g~~~~A~~~~~~~~~~~~~ 543 (587)
.+|.. .+++++|..+++++.+.+|.
T Consensus 407 ~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 407 EIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 77776 67777777777777777743
No 15
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.94 E-value=1e-21 Score=192.83 Aligned_cols=386 Identities=13% Similarity=0.058 Sum_probs=247.8
Q ss_pred ChhhHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCh
Q 038622 124 DQFTYNTLVNGLCK----VGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCK----LGEVEEAVEILNQMILRDCSPNT 195 (587)
Q Consensus 124 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~ 195 (587)
+...+..+...|.. .+++++|...|++..+.| ++..+..+...|.. .+++++|..+|++....+ ++
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 44445555555554 555555665555555532 34455555555555 556666666666655543 44
Q ss_pred hhHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCHHh
Q 038622 196 ITYNTLISTLCK----ENQVEEATELARVLTSKGILPDVCTFNSLIQGLCL----TSNFDVAMELFQEMKTKGCQPDEFT 267 (587)
Q Consensus 196 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 267 (587)
.++..|+..|.. .+++++|+.+|++..+.+ ++..+..+...|.. .+++++|.+.|++..+.+ +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 555555555555 556666666666665543 44555555555554 566777777777666653 4566
Q ss_pred HHHHHHHHHc----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 038622 268 YNMLIDSLCS----RGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCK----LKRIEEAEEIFDEMEIQGISRNSVTYN 339 (587)
Q Consensus 268 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 339 (587)
+..++..|.. .++.++|+.+|++..+.+ +......++..|.. .+++++|...|++....+ +...+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 259 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQF 259 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 6666666665 667777777777776643 44556666666664 667777777777776543 445566
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCcchHHH
Q 038622 340 TLIDGLCK----SRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRA-----GDIKRAADIVQNMTSNGCEPDIVTYGT 410 (587)
Q Consensus 340 ~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~ 410 (587)
.+...+.. .+++++|+..|+++.+.+ +...+..+...+... +++++|...+++..+.+ +...+..
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 333 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQAN 333 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHH
Confidence 66666666 677888888888777643 455666677777766 78888888888887753 4456777
Q ss_pred HHHHHHhcC---ChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038622 411 LIGGLCKAG---RVEVASKLLRSIQMKGIVLTPQAYNPVIQALFR----RKRTTEAMRLFREMMEKADPPDALTYKHVFR 483 (587)
Q Consensus 411 l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 483 (587)
++.+|...| ++++|.++|++..+. .++..+..++..|.. .+++++|+..|+++.+.+ +...+..++.
T Consensus 334 lg~~y~~~g~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~ 407 (490)
T 2xm6_A 334 LGAIYFRLGSEEEHKKAVEWFRKAAAK---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGE 407 (490)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHhCCCcccHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 777777655 778888888888875 266788888888887 788888888888888754 4566667777
Q ss_pred HHHh----CCCCHHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCC
Q 038622 484 GLCN----GGGPIGEAVDFVIEMLERGFL-P-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAK 542 (587)
Q Consensus 484 ~~~~----~~~~~~~A~~~~~~~~~~~~~-p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 542 (587)
.+.. .++ +++|...|+++++.+.. | ++.+...++.++.. +.+.|.+..++..+..|
T Consensus 408 ~y~~g~g~~~d-~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~--~~~~a~~~a~~~~~~~~ 469 (490)
T 2xm6_A 408 IYYYGLGVERD-YVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK--QLQQAELLSQQYIEKYA 469 (490)
T ss_dssp HHHHTSSSCCC-HHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH--HHHHHHHHHHHHHHHHC
T ss_pred HHHcCCCCCCC-HHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh--HHHHHHHHHHHHHHHHH
Confidence 7776 666 88888888888875422 2 45555666665543 23444444444444433
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.93 E-value=2.2e-22 Score=189.92 Aligned_cols=332 Identities=12% Similarity=0.043 Sum_probs=234.2
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 038622 159 DVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQ 238 (587)
Q Consensus 159 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 238 (587)
++..+..++..+...|++++|+..|+++...+ +.+..++..++.++...|++++|...++++.+.. +.+...+..++.
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 45567888999999999999999999999876 5578899999999999999999999999998863 336788999999
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCC---CCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 038622 239 GLCLTSNFDVAMELFQEMKTKGCQ---PDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKR 315 (587)
Q Consensus 239 ~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 315 (587)
++...|++++|...|+++.+.. + .+...+..+..... ...+..++..+...|+
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGAD 135 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTC
T ss_pred HHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccC
Confidence 9999999999999999999874 3 34455544432110 0112233444555555
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 038622 316 IEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQN 395 (587)
Q Consensus 316 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 395 (587)
+++|...++++.... |.+...+..++.++...|++++|...+++++... +.+...+..++.++...|++++|...+++
T Consensus 136 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 213 (359)
T 3ieg_A 136 YTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRE 213 (359)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 555555555555443 3445555555555555566666666665555532 22444555555555556666666666655
Q ss_pred HHHCCCCCCcch------------HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh----HhHHHHHHHHHhcCCHHHH
Q 038622 396 MTSNGCEPDIVT------------YGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTP----QAYNPVIQALFRRKRTTEA 459 (587)
Q Consensus 396 ~~~~~~~~~~~~------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A 459 (587)
+.+..+. +... ...++..+...|++++|...++++.+..+. +. ..+..++.++...|++++|
T Consensus 214 a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 214 CLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHH
Confidence 5553211 1111 223466788889999999999988886433 33 2355678888999999999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcc
Q 038622 460 MRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSL 524 (587)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 524 (587)
+..++++++.. |.+...+..++..+...|+ +++|...++++++ +.| +..++..+..+....
T Consensus 292 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~-~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 292 IRICSEVLQME-PDNVNALKDRAEAYLIEEM-YDEAIQDYEAAQE--HNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHh--cCCCChHHHHHHHHHHHHH
Confidence 99999998874 6678888888888999998 9999999999998 456 577777777665543
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.92 E-value=7.3e-22 Score=183.94 Aligned_cols=283 Identities=15% Similarity=0.049 Sum_probs=123.9
Q ss_pred HhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 038622 230 VCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDG 309 (587)
Q Consensus 230 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 309 (587)
...+..++..+...|++++|.++|+++.+.. +.+...+..++.++...|++++|...++++.+.. +.+...+..++..
T Consensus 22 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 99 (330)
T 3hym_B 22 LDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCY 99 (330)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHH
Confidence 3334444444444444444444444444432 2233334444444444444444444444444432 2333444444444
Q ss_pred HHccC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHH
Q 038622 310 FCKLK-RIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKR 388 (587)
Q Consensus 310 ~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 388 (587)
+...| ++++|...++++.... |.+...+..++..+...|++++|...++++.... +.+...+..++..+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHH
Confidence 44444 4444444444444332 2233444444444444444444444444444431 1122333334444444444444
Q ss_pred HHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCC--------CCChHhHHHHHHHHHhcCCHHHHH
Q 038622 389 AADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGI--------VLTPQAYNPVIQALFRRKRTTEAM 460 (587)
Q Consensus 389 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~ 460 (587)
|...++++.+..+. +...+..++.++...|++++|...++++.+... +.....+..++.++...|++++|+
T Consensus 178 A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (330)
T 3hym_B 178 AERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256 (330)
T ss_dssp HHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 44444444443211 233444444444444444444444444443210 112234444444444455555555
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 038622 461 RLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGL 521 (587)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~ 521 (587)
..++++++.. +.+...+..++..+...|+ +++|...++++++ +.| ++.++..++.++
T Consensus 257 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~--~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 257 DYHRQALVLI-PQNASTYSAIGYIHSLMGN-FENAVDYFHTALG--LRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHS-TTCSHHHHHHHHHHHHHTC-HHHHHHHHHTTTT--TCSCCHHHHHHHHHHH
T ss_pred HHHHHHHhhC-ccchHHHHHHHHHHHHhcc-HHHHHHHHHHHHc--cCCCchHHHHHHHHHH
Confidence 5555444432 3333444444444444444 4555555554444 223 344444444444
No 18
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.91 E-value=6e-21 Score=189.43 Aligned_cols=428 Identities=11% Similarity=0.055 Sum_probs=287.7
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 038622 113 IQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCS 192 (587)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 192 (587)
+++.++.+ |-+...|..++.. .+.|++++|..+|+++++. .+.+...|..++..+.+.|+++.|..+|++++...
T Consensus 2 le~al~~~-P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-- 76 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-- 76 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--
T ss_pred hhhHhhhC-CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--
Confidence 45555553 5577888888884 7789999999999999886 34456788888888999999999999999998774
Q ss_pred CChhhHHHHHHHH-hccCCHHHHHH----HHHHHHhC-CCCC-CHhhHHHHHHHHHh---------cCChHHHHHHHHHH
Q 038622 193 PNTITYNTLISTL-CKENQVEEATE----LARVLTSK-GILP-DVCTFNSLIQGLCL---------TSNFDVAMELFQEM 256 (587)
Q Consensus 193 ~~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~ 256 (587)
|+...|..++... ...|+.+.|.+ +|+..... |..| +...|...+..... .|+++.|..+|+++
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 4777777776533 34566666654 66665542 3333 45566666665543 57788888888888
Q ss_pred HHcCCCCC--HHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH------H
Q 038622 257 KTKGCQPD--EFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEME------I 328 (587)
Q Consensus 257 ~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------~ 328 (587)
++. |.+ ...|..........|. ..+..++ ....+++..|..++.... .
T Consensus 157 l~~--P~~~~~~~~~~~~~~e~~~~~-~~~~~~l---------------------~~~~~~~~~A~~~~~~~~~~~~~l~ 212 (530)
T 2ooe_A 157 CVN--PMINIEQLWRDYNKYEEGINI-HLAKKMI---------------------EDRSRDYMNARRVAKEYETVMKGLD 212 (530)
T ss_dssp TTS--CCTTHHHHHHHHHHHHHHHCH-HHHHHHH---------------------HTTHHHHHHHHHHHHHHHHHHHHCC
T ss_pred Hhc--hhhhHHHHHHHHHHHHHhhch-hHHHHHH---------------------HHhhHHHHHHHHHHHHHHHHHHHhc
Confidence 763 222 2233222221111110 0000000 012234555555554421 1
Q ss_pred cC---CCCC--------HHHHHHHHHHHHhc----CCH----HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh-------
Q 038622 329 QG---ISRN--------SVTYNTLIDGLCKS----RRV----EDAAQLMDQMIMEGLKPDKFTYNSLLTYYCR------- 382 (587)
Q Consensus 329 ~~---~~~~--------~~~~~~l~~~~~~~----~~~----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~------- 382 (587)
.. ++|+ ...|...+...... ++. +.+..+|++++... +.+...|..++..+..
T Consensus 213 ~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~ 291 (530)
T 2ooe_A 213 RNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAE 291 (530)
T ss_dssp SSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHT
T ss_pred cccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhh
Confidence 11 2332 13444444332221 222 46778888888752 3466778777777765
Q ss_pred cCCHH-------HHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-h-HhHHHHHHHHHhc
Q 038622 383 AGDIK-------RAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLT-P-QAYNPVIQALFRR 453 (587)
Q Consensus 383 ~~~~~-------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~ 453 (587)
.|+++ +|..+++++++.-.+.+...+..++..+...|++++|..+|+++++. .|+ . ..|..++..+.+.
T Consensus 292 ~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~ 369 (530)
T 2ooe_A 292 KGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRA 369 (530)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHh
Confidence 68876 88999999886212225777888888888999999999999999885 333 2 5788888888889
Q ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHH
Q 038622 454 KRTTEAMRLFREMMEKADPPDALTYKHVFRG-LCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLV 531 (587)
Q Consensus 454 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 531 (587)
|++++|..+|+++++.. +.+...+...+.. +...|+ .++|..+|+++++. .| ++.++..++..+.+.|+.++|+
T Consensus 370 ~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~-~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar 445 (530)
T 2ooe_A 370 EGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKD-KSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTR 445 (530)
T ss_dssp HHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCC-HHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHH
T ss_pred cCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHH
Confidence 99999999999999863 3333444333333 235777 99999999999984 35 6888999999999999999999
Q ss_pred HHHHHHHhcCCCCC-----chhhhhhhHHHHHHHHHHHHhcchhhhccCc
Q 038622 532 ELIDMVMDKAKFSD-----RETSMVRGFLKIRKFQDALATFGDILDSRMP 576 (587)
Q Consensus 532 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 576 (587)
.++++++...|.++ .|..++......|+.+++...++++.+..+.
T Consensus 446 ~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 446 VLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 99999998866442 4666677777889999999999998888763
No 19
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.91 E-value=2.3e-20 Score=185.26 Aligned_cols=433 Identities=12% Similarity=0.076 Sum_probs=247.0
Q ss_pred HHHHHhCCCCCCHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 038622 8 HADMVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCL 87 (587)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 87 (587)
+++.++.+ |-|...|..++.. .+.|++++|..+|+++.+.. |.+...|..++..+.+.|++++|..+|++++...
T Consensus 2 le~al~~~-P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-- 76 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-- 76 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--
T ss_pred hhhHhhhC-CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--
Confidence 45555554 5577788888874 67788888888888887764 6677788888888888888888888888888764
Q ss_pred CChhhHHHHHHHH-HhcCCHHHHHH----HHHHHHHC-CCC-CChhhHHHHHHHHHh---------cCChHHHHHHHHHH
Q 038622 88 VTNVTVNVLVHGF-CKEGRIEDALS----FIQEMVSE-GFN-PDQFTYNTLVNGLCK---------VGHVKQALEVMDMM 151 (587)
Q Consensus 88 ~~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~~-~~~-~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~ 151 (587)
|+...|..++... ...|+++.|.+ +|++++.. |.. ++...|...+....+ .|+++.|..+|+++
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 2566666666433 34566666554 66665542 322 234566666655543 45566666666666
Q ss_pred HhCCCCCCc---ccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC
Q 038622 152 LQEGFDPDV---FTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILP 228 (587)
Q Consensus 152 ~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 228 (587)
++. |.. ..|..........|. ..+..+ +. ...+++..|..++..+...
T Consensus 157 l~~---P~~~~~~~~~~~~~~e~~~~~-~~~~~~-------------------l~--~~~~~~~~A~~~~~~~~~~---- 207 (530)
T 2ooe_A 157 CVN---PMINIEQLWRDYNKYEEGINI-HLAKKM-------------------IE--DRSRDYMNARRVAKEYETV---- 207 (530)
T ss_dssp TTS---CCTTHHHHHHHHHHHHHHHCH-HHHHHH-------------------HH--TTHHHHHHHHHHHHHHHHH----
T ss_pred Hhc---hhhhHHHHHHHHHHHHHhhch-hHHHHH-------------------HH--HhhHHHHHHHHHHHHHHHH----
Confidence 552 211 111111110000000 000000 00 0122333444333331100
Q ss_pred CHhhHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCCC--------HHhHHHHHHHHHc----cCCh----HHHHHHHH
Q 038622 229 DVCTFNSLIQGLCLTSNFDVAMELFQEMKTK---GCQPD--------EFTYNMLIDSLCS----RGML----EEALKLLK 289 (587)
Q Consensus 229 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~--------~~~~~~l~~~~~~----~~~~----~~a~~~~~ 289 (587)
....+. .++|+ ...|...+..... .++. +.+...|+
T Consensus 208 -------------------------~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~ 262 (530)
T 2ooe_A 208 -------------------------MKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYE 262 (530)
T ss_dssp -------------------------HHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHH
T ss_pred -------------------------HHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHH
Confidence 000000 01111 1222222221111 1122 35556666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHc-------cCCHH-------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038622 290 EMESSGCARNVVTYNTLIDGFCK-------LKRIE-------EAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAA 355 (587)
Q Consensus 290 ~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 355 (587)
+++... |.+...|..++..+.+ .|+++ +|..+|++....-.|.+...|..++..+...|++++|.
T Consensus 263 ~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~ 341 (530)
T 2ooe_A 263 QCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVH 341 (530)
T ss_dssp HHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHH
Confidence 666543 4556666666666554 56665 77777777765222456667777777777777777777
Q ss_pred HHHHHHHHcCCCCC-H-hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHH-HHhcCChHHHHHHHHHHH
Q 038622 356 QLMDQMIMEGLKPD-K-FTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGG-LCKAGRVEVASKLLRSIQ 432 (587)
Q Consensus 356 ~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~ 432 (587)
.+|++++.. .|+ . ..|..++..+.+.|++++|..+|+++++... .+...+...+.. +...|+.++|..+|++++
T Consensus 342 ~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al 418 (530)
T 2ooe_A 342 SIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGL 418 (530)
T ss_dssp HHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 777777764 333 2 3667777777777777778877777776421 123333333222 235778888888888777
Q ss_pred HcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCC--CHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 038622 433 MKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKA-DPP--DALTYKHVFRGLCNGGGPIGEAVDFVIEMLER 505 (587)
Q Consensus 433 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 505 (587)
+..+. +...|..++..+...|+.++|..+|++++..+ .+| ....|...+......|+ .+.+..+..++.+.
T Consensus 419 ~~~p~-~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~-~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 419 KKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD-LASILKVEKRRFTA 492 (530)
T ss_dssp HHHTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSC-HHHHHHHHHHHHHH
T ss_pred HHCCC-CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHH
Confidence 75332 56777777877778888888888888887753 122 13356666666667777 88888888887763
No 20
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.91 E-value=1.7e-21 Score=181.40 Aligned_cols=285 Identities=10% Similarity=-0.000 Sum_probs=138.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 038622 54 DERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVN 133 (587)
Q Consensus 54 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 133 (587)
++..+...+..+...|++++|+.+++++.+.+ |.+...+..++.++...|++++|..+++++++.. +.+...+..++.
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 33444444444444455555555555544443 3333444444444445555555555555544432 233444444445
Q ss_pred HHHhcC-ChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHH
Q 038622 134 GLCKVG-HVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVE 212 (587)
Q Consensus 134 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 212 (587)
.+...| ++++|.+.|+++.+.. +.+...+..++..+...|++++|+..++++.... +.+...+..++.++...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence 555555 4555555555544432 1123444444555555555555555555544443 223344444555555555555
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcC--------CCCCHHhHHHHHHHHHccCChHHH
Q 038622 213 EATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKG--------CQPDEFTYNMLIDSLCSRGMLEEA 284 (587)
Q Consensus 213 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a 284 (587)
+|...++++.+.. +.+...+..++..+...|++++|...++++.+.. .+....++..++.++...|++++|
T Consensus 177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 255 (330)
T 3hym_B 177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA 255 (330)
T ss_dssp HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence 5555555554432 2234445555555555555555555555544321 022234555555555555666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038622 285 LKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGL 345 (587)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 345 (587)
+..++++.+.. +.+...+..++.++...|++++|...++++.... |.+...+..+..++
T Consensus 256 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 256 LDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHH
Confidence 66665555543 3344555555556666666666666665555443 33445555555544
No 21
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.90 E-value=2.9e-18 Score=175.48 Aligned_cols=484 Identities=12% Similarity=0.116 Sum_probs=293.4
Q ss_pred hHHHHHHHHHHcCChhhHHHHHHhhccCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 038622 22 TFNILIKALCKAHQIRPAILMMEEMPGYG--LAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHG 99 (587)
Q Consensus 22 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 99 (587)
--...+++|...|.+.+|+++++++.-.+ +..+...-+.++.+..+. +..+...+.++.... ....++..
T Consensus 987 eVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~eIA~I 1058 (1630)
T 1xi4_A 987 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPDIANI 1058 (1630)
T ss_pred HhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHHHHHH
Confidence 33555667777777777777777776332 113344445555555544 344444444443311 12336667
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHH
Q 038622 100 FCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEA 179 (587)
Q Consensus 100 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 179 (587)
+...|.+++|..+|++... .......+ +-..+++++|.++.++. -++.+|..++.++...|++++|
T Consensus 1059 ai~lglyEEAf~IYkKa~~-----~~~A~~VL---ie~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1059 AISNELFEEAFAIFRKFDV-----NTSAVQVL---IEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHhCCCHHHHHHHHHHcCC-----HHHHHHHH---HHHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHH
Confidence 7777888888888877521 11111222 22567777777777754 2466777888888888888888
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038622 180 VEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTK 259 (587)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 259 (587)
+..|.+. .+...|..++.++.+.|++++|++.|....+.. +++.....++.+|.+.+++++...+ +.
T Consensus 1125 IdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f----I~- 1191 (1630)
T 1xi4_A 1125 IDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF----IN- 1191 (1630)
T ss_pred HHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH----Hh-
Confidence 8888653 366777778888888888888888887776653 2333333477777777777753332 21
Q ss_pred CCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 038622 260 GCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYN 339 (587)
Q Consensus 260 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 339 (587)
.++...+..++..+...|++++|..+|..+ ..|..++.++.+.|++++|.+.+++. .+..+|.
T Consensus 1192 --~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWk 1254 (1630)
T 1xi4_A 1192 --GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWK 1254 (1630)
T ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHH
Confidence 345566667888888888888888888874 26777888888888888888888765 3557787
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhc-
Q 038622 340 TLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKA- 418 (587)
Q Consensus 340 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 418 (587)
.+..+|...|++..|......+ ..++..+..++..|...|.+++|+.+++..+..+ +-....|..++.++.+.
T Consensus 1255 ev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~ 1328 (1630)
T 1xi4_A 1255 EVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK 1328 (1630)
T ss_pred HHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCC
Confidence 7888888888888777765542 2355566778888888888888888888777543 22344565666666543
Q ss_pred -CChHHHHHHHHHHHHcCCCC------ChHhHHHHHHHHHhcCCHHHHHHHH-------------HHHHhcCCCCCHHHH
Q 038622 419 -GRVEVASKLLRSIQMKGIVL------TPQAYNPVIQALFRRKRTTEAMRLF-------------REMMEKADPPDALTY 478 (587)
Q Consensus 419 -~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~-------------~~~~~~~~~~~~~~~ 478 (587)
++..++.+.|..-.. +++ +...|..+...|.+.|+++.|.... +..+.. ..+...+
T Consensus 1329 peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~k--v~n~ely 1404 (1630)
T 1xi4_A 1329 PQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VANVELY 1404 (1630)
T ss_pred HHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcc--cccHHHH
Confidence 344444554443222 222 3467888888888888888887322 222221 4455666
Q ss_pred HHHHHHHHhCC---------------CCHHHHHHHHHHH------------HHcCCCCCHHHHHHHHHHHHccCCHhHHH
Q 038622 479 KHVFRGLCNGG---------------GPIGEAVDFVIEM------------LERGFLPEFSSFYMLAEGLVSLGKEETLV 531 (587)
Q Consensus 479 ~~l~~~~~~~~---------------~~~~~A~~~~~~~------------~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 531 (587)
...+..|...+ + .+.+..++.+. ++ ...+..+-..+...|...++++.-+
T Consensus 1405 ykai~Fyl~~~P~~lndLl~~l~~rlD-~~R~V~l~~~~~~l~lik~yl~~vq--~~n~~~Vneal~el~ieeed~~~Lr 1481 (1630)
T 1xi4_A 1405 YRAIQFYLEFKPLLLNDLLMVLSPRLD-HTRAVNYFSKVKQLPLVKPYLRSVQ--NHNNKSVNESLNNLFITEEDYQALR 1481 (1630)
T ss_pred HHHHHHHHhhChHHHHHHHHHhhhcCC-hHHHHHHHHHcCChHHhHHHHHHHH--HhcchhhhHHHHHHhcCccchHHHH
Confidence 66665555444 4 55555555421 11 0123334445666666666654333
Q ss_pred HHHHHHHhcCC--------CCCch--hhhhhhHHHH-HHHHHHHHhcchh
Q 038622 532 ELIDMVMDKAK--------FSDRE--TSMVRGFLKI-RKFQDALATFGDI 570 (587)
Q Consensus 532 ~~~~~~~~~~~--------~~~~~--~~~~~~~~~~-~~~~~A~~~~~~~ 570 (587)
...+..-..+. ..+.. ..++..+++. |+|.+|++.+++-
T Consensus 1482 ~si~~~~nfd~~~La~~lekheLl~frrIAa~ly~~n~~~~~ai~l~k~d 1531 (1630)
T 1xi4_A 1482 TSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKD 1531 (1630)
T ss_pred HHHhhccCcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCcHHHHHHHHHhc
Confidence 33322111111 12221 4444444444 7888888777653
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.90 E-value=7.9e-22 Score=186.76 Aligned_cols=309 Identities=13% Similarity=0.014 Sum_probs=183.7
Q ss_pred HHhcCChHHHHH-HHHHHHHcCC-CC--CHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 038622 240 LCLTSNFDVAME-LFQEMKTKGC-QP--DEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKR 315 (587)
Q Consensus 240 ~~~~~~~~~a~~-~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 315 (587)
+...|++++|.+ .|++...... .| +...+..++..+...|++++|+..++++.+.. |.+..++..++.++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 334455555555 5554433210 00 12334455555555555555555555555543 3444455555555555555
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 038622 316 IEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQN 395 (587)
Q Consensus 316 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 395 (587)
+++|...++++.... |.+...+..++.++...|++++|...+++++..... +...+..+... . .
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~-------~ 177 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------A-------G 177 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------------
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------h-------h
Confidence 555555555555443 334455555555555555555555555555543211 11111100000 0 0
Q ss_pred HHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 038622 396 MTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVL-TPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPD 474 (587)
Q Consensus 396 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 474 (587)
. ..+ ...+..+...+ ..|++++|..+++++.+..+.. +...+..++.++...|++++|+..++++++.. |.+
T Consensus 178 ~----~~~-~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~ 250 (368)
T 1fch_A 178 G----AGL-GPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PND 250 (368)
T ss_dssp -------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred h----hcc-cHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCC
Confidence 0 000 00011233333 7788888888888888753321 36778888888888888888888888888864 666
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC---------
Q 038622 475 ALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS--------- 544 (587)
Q Consensus 475 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--------- 544 (587)
...+..++..+...|+ +++|+..++++++. .| +..++..++.+|.+.|++++|+..++++++..|..
T Consensus 251 ~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 327 (368)
T 1fch_A 251 YLLWNKLGATLANGNQ-SEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGA 327 (368)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCC
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccc
Confidence 7788888888888888 88888888888874 45 67888888888888888888888888888877765
Q ss_pred ---CchhhhhhhHHHHHHHHHHHHhcchhhhccC
Q 038622 545 ---DRETSMVRGFLKIRKFQDALATFGDILDSRM 575 (587)
Q Consensus 545 ---~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 575 (587)
..+..++.+|...|++++|...+.+.++...
T Consensus 328 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 361 (368)
T 1fch_A 328 MSENIWSTLRLALSMLGQSDAYGAADARDLSTLL 361 (368)
T ss_dssp CCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHH
T ss_pred hhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHH
Confidence 3477888888888888888888887776543
No 23
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.90 E-value=3.4e-20 Score=181.82 Aligned_cols=387 Identities=11% Similarity=-0.054 Sum_probs=176.6
Q ss_pred hhhHHHHHHHHHhcCChHHHHHHHHHHHhC-----C--CCC-CcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC------
Q 038622 125 QFTYNTLVNGLCKVGHVKQALEVMDMMLQE-----G--FDP-DVFTYNSLISGLCKLGEVEEAVEILNQMILRD------ 190 (587)
Q Consensus 125 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------ 190 (587)
...|+.++.++...|++++|++.|++..+. + ..| ...+|..++.+|...|++++|+..++++....
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 345666777777777777777777766541 0 111 23455666666677777777776666654320
Q ss_pred -CCCChhhHHHHHHHHhc--cCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHH---HhcCChHHHHHHHHHHHHcCCCCC
Q 038622 191 -CSPNTITYNTLISTLCK--ENQVEEATELARVLTSKGILPDVCTFNSLIQGL---CLTSNFDVAMELFQEMKTKGCQPD 264 (587)
Q Consensus 191 -~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~ 264 (587)
......++..++.++.. .+++++|+..|++..+.. +.++..+..+..++ ...++.++|++.+++.++.. +.+
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence 01122334333333332 334566666666655542 11333333333332 23345555555555555543 333
Q ss_pred HHhHHHHHHHHHc----cCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 038622 265 EFTYNMLIDSLCS----RGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNT 340 (587)
Q Consensus 265 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 340 (587)
..++..++..+.. .+++++|.+.++++.... +....++..++..+...|++++|...++++.... |.+..++..
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~ 286 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHH
Confidence 4444444433322 244555555555555543 3444555555555556666666666665555543 334444444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCC
Q 038622 341 LIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGR 420 (587)
Q Consensus 341 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 420 (587)
++.+|...+... ... .. ..........+.++.|...++.+...++. +...+..++..+...|+
T Consensus 287 lg~~y~~~~~~~---------~~~-~~------~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~ 349 (472)
T 4g1t_A 287 IGCCYRAKVFQV---------MNL-RE------NGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQ 349 (472)
T ss_dssp HHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHh---------hhH-HH------HHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhcc
Confidence 444432211000 000 00 00000011112345566666665554322 44556666666666666
Q ss_pred hHHHHHHHHHHHHcCCCCCh--HhHHHHHHH-HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHH
Q 038622 421 VEVASKLLRSIQMKGIVLTP--QAYNPVIQA-LFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVD 497 (587)
Q Consensus 421 ~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~ 497 (587)
+++|...|+++.+..+.+.. ..+..++.. ....|++++|+..|+++++. .|+..... +. ...+.+
T Consensus 350 ~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~---------~~-~~~l~~ 417 (472)
T 4g1t_A 350 YEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKE---------KM-KDKLQK 417 (472)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHH---------HH-HHHHHH
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHH---------HH-HHHHHH
Confidence 66666666666654322211 122223322 23456666666666666663 23322111 11 333444
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCC
Q 038622 498 FVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSD 545 (587)
Q Consensus 498 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 545 (587)
++++.++.+ +.++.++..||.+|...|++++|++.|+++++.+|..+
T Consensus 418 ~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p 464 (472)
T 4g1t_A 418 IAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIP 464 (472)
T ss_dssp HHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-----------------
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 555555532 22566666666666666666666666666666665543
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.89 E-value=2.3e-21 Score=183.51 Aligned_cols=308 Identities=12% Similarity=-0.026 Sum_probs=231.4
Q ss_pred HHhccCCHHHHHH-HHHHHHhCCCC---CCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccC
Q 038622 204 TLCKENQVEEATE-LARVLTSKGIL---PDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRG 279 (587)
Q Consensus 204 ~~~~~~~~~~a~~-~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 279 (587)
++...|++++|.. .+++....... .+...+..++..+...|++++|...|+++.+.. +.+..++..++.++...|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 6667889999998 88866654211 135668889999999999999999999999875 667889999999999999
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038622 280 MLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMD 359 (587)
Q Consensus 280 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 359 (587)
++++|+..++++.+.. +.+..++..++.++...|++++|...++++.... |.+...+..+... ..
T Consensus 113 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~-------~~------ 177 (368)
T 1fch_A 113 QELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEG-------AG------ 177 (368)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC--------------------
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH-------hh------
Confidence 9999999999999876 6688899999999999999999999999998875 3333333221111 00
Q ss_pred HHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 038622 360 QMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEP-DIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVL 438 (587)
Q Consensus 360 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 438 (587)
. ..+. ..+..+...+ ..|++++|...++++.+..+.. +...+..++.++...|++++|...++++....+.
T Consensus 178 -~----~~~~-~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~- 249 (368)
T 1fch_A 178 -G----AGLG-PSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN- 249 (368)
T ss_dssp --------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred -h----hccc-HHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-
Confidence 0 0011 1112223333 7788999999999888753321 4667888899999999999999999998886433
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-C-------
Q 038622 439 TPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-E------- 510 (587)
Q Consensus 439 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~------- 510 (587)
+...+..++.++...|++++|+..|+++++.. |.+...+..++..+...|+ +++|...++++++. .| +
T Consensus 250 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~--~~~~~~~~~~~ 325 (368)
T 1fch_A 250 DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGA-HREAVEHFLEALNM--QRKSRGPRGEG 325 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHH--HHTC------C
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHh--CCCCCCccccc
Confidence 56788999999999999999999999999874 6678888889999999999 99999999999863 23 3
Q ss_pred ----HHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 038622 511 ----FSSFYMLAEGLVSLGKEETLVELIDMVMD 539 (587)
Q Consensus 511 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 539 (587)
..++..++.+|...|++++|..++++.++
T Consensus 326 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 358 (368)
T 1fch_A 326 GAMSENIWSTLRLALSMLGQSDAYGAADARDLS 358 (368)
T ss_dssp CCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred cchhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence 68899999999999999999999886554
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.89 E-value=8.2e-22 Score=186.26 Aligned_cols=269 Identities=12% Similarity=0.027 Sum_probs=196.8
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 038622 301 VTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYY 380 (587)
Q Consensus 301 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 380 (587)
..+..++..+...|++++|+..|+++.... |.+...+..++.++...|++++|+..|++++... +.+...+..++.++
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSY 143 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 346666666777777777777777766654 4556667777777777777777777777776642 23455666777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCC---------CCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-ChHhHHHHHHHH
Q 038622 381 CRAGDIKRAADIVQNMTSNGCE---------PDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVL-TPQAYNPVIQAL 450 (587)
Q Consensus 381 ~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~ 450 (587)
...|++++|...++++.+..+. .....+..++..+...|++++|..+++++....+.. +...+..++..+
T Consensus 144 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 144 TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF 223 (365)
T ss_dssp HHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence 7777777777777776653211 012233445788888999999999999998864331 567888999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhH
Q 038622 451 FRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEET 529 (587)
Q Consensus 451 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 529 (587)
...|++++|+..|+++++.. |.+...+..++.++...|+ +++|+..++++++. .| +..++..++.+|...|++++
T Consensus 224 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDR-SEEAVEAYTRALEI--QPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCHHH
Confidence 99999999999999999874 6678888899999999999 99999999999984 45 68889999999999999999
Q ss_pred HHHHHHHHHhcCCC-------------CCchhhhhhhHHHHHHHHHHHHhcchhhhccC
Q 038622 530 LVELIDMVMDKAKF-------------SDRETSMVRGFLKIRKFQDALATFGDILDSRM 575 (587)
Q Consensus 530 A~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 575 (587)
|+..++++++..|. ...+..++.++...|+.+.|....++..+...
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~~~~ 358 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDVLL 358 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCGGGT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHHHHH
Confidence 99999999988776 23478888888899999988888777555443
No 26
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.89 E-value=9.8e-20 Score=178.59 Aligned_cols=387 Identities=11% Similarity=-0.057 Sum_probs=252.4
Q ss_pred CcccHHHHHHHHHhcCCHHHHHHHHHHHHhC--------CCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhC-----C
Q 038622 159 DVFTYNSLISGLCKLGEVEEAVEILNQMILR--------DCSPNTITYNTLISTLCKENQVEEATELARVLTSK-----G 225 (587)
Q Consensus 159 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~ 225 (587)
....|+.++..+...|++++|++.|++.++. ..+....++..++.+|...|++++|...+++.... +
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3566888889999999999999999887642 11224456888899999999999999988877642 1
Q ss_pred --CCCCHhhHHHHHHHHHhc--CChHHHHHHHHHHHHcCCCCCHHhHHHHHHHH---HccCChHHHHHHHHHHHHCCCCC
Q 038622 226 --ILPDVCTFNSLIQGLCLT--SNFDVAMELFQEMKTKGCQPDEFTYNMLIDSL---CSRGMLEEALKLLKEMESSGCAR 298 (587)
Q Consensus 226 --~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~ 298 (587)
......++.....++... +++++|++.|+++.+.. |.++..+..++.++ ...++.++|++.++++++.+ |.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~ 207 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD 207 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc
Confidence 011345565555555543 56889999999888774 44566666655553 44577788888888888765 55
Q ss_pred CHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHH
Q 038622 299 NVVTYNTLIDGFCK----LKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYN 374 (587)
Q Consensus 299 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 374 (587)
+..++..++..+.. .+++++|.+.+++..... |.+...+..++..+...|++++|...++++++.. +.+..++.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHH
Confidence 66666666555443 456778888888887765 6677788888888888999999999998888753 22455666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC
Q 038622 375 SLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRK 454 (587)
Q Consensus 375 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 454 (587)
.++.+|...+... .... ...........+..+.|...++++...++. +...+..++..+...|
T Consensus 286 ~lg~~y~~~~~~~---------~~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 286 QIGCCYRAKVFQV---------MNLR-------ENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh---------hhHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhc
Confidence 6666554321111 1100 000111112234568899999998886443 5678899999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCHH--HHHHHHHH-HHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHH
Q 038622 455 RTTEAMRLFREMMEKADPPDAL--TYKHVFRG-LCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLV 531 (587)
Q Consensus 455 ~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~-~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 531 (587)
++++|+..|+++++....+... .+..++.. ....|+ +++|+..|+++++ +.|+...... ....+.
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Ai~~y~kal~--i~~~~~~~~~---------~~~~l~ 416 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKC-EDKAIHHFIEGVK--INQKSREKEK---------MKDKLQ 416 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSC-HHHHHHHHHHHHH--SCCCCHHHHH---------HHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHh--cCcccHHHHH---------HHHHHH
Confidence 9999999999999864222221 22333333 346677 9999999999998 5675332221 234566
Q ss_pred HHHHHHHhcCCCC-CchhhhhhhHHHHHHHHHHHHhcchhhhccCchh
Q 038622 532 ELIDMVMDKAKFS-DRETSMVRGFLKIRKFQDALATFGDILDSRMPRK 578 (587)
Q Consensus 532 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 578 (587)
+++++.++.+|.. ..+..++.+|...|++++|++.|+++++.++...
T Consensus 417 ~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p 464 (472)
T 4g1t_A 417 KIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIP 464 (472)
T ss_dssp HHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 7788888888876 5689999999999999999999999999775443
No 27
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.89 E-value=4.2e-18 Score=174.27 Aligned_cols=319 Identities=16% Similarity=0.183 Sum_probs=143.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 038622 93 VNVLVHGFCKEGRIEDALSFIQEMVSEGF--NPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGL 170 (587)
Q Consensus 93 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 170 (587)
....++.|...|.+.+|+++++++.-.+- ..+...-+.++....+. +..+..++..+.... + ...++..+
T Consensus 988 Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Ia 1059 (1630)
T 1xi4_A 988 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIA 1059 (1630)
T ss_pred hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHH
Confidence 34444555555555555555555552210 01112222233333333 333333333333211 1 22244455
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHH
Q 038622 171 CKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAM 250 (587)
Q Consensus 171 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 250 (587)
...|.+++|..+|++.. ....+...+ +...+++++|.++.++. .++.+|..++.++...|++++|+
T Consensus 1060 i~lglyEEAf~IYkKa~-----~~~~A~~VL---ie~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAI 1125 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFD-----VNTSAVQVL---IEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAI 1125 (1630)
T ss_pred HhCCCHHHHHHHHHHcC-----CHHHHHHHH---HHHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 55555555555555531 011111111 11344555555554433 13445555555555555555555
Q ss_pred HHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 038622 251 ELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQG 330 (587)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 330 (587)
+.|.+. .|...|..++.++.+.|++++|+++|..+.+.. ++......++.+|.+.+++++..... .
T Consensus 1126 dsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~-- 1191 (1630)
T 1xi4_A 1126 DSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N-- 1191 (1630)
T ss_pred HHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h--
Confidence 555332 244445555555555555555555555544432 12112223455555555544322211 1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHH
Q 038622 331 ISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGT 410 (587)
Q Consensus 331 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 410 (587)
.++...+..++..|...|++++|..+|..+ ..|..++.++.+.|+++.|++.+++.. +..+|..
T Consensus 1192 -~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWke 1255 (1630)
T 1xi4_A 1192 -GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKE 1255 (1630)
T ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHH
Confidence 223344444555555555555555555543 134455555555555555555555441 3344555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038622 411 LIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMME 468 (587)
Q Consensus 411 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 468 (587)
+..+|...|++..|......+. .++..+..++..|...|.+++|+.+++..+.
T Consensus 1256 v~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~ 1308 (1630)
T 1xi4_A 1256 VCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALG 1308 (1630)
T ss_pred HHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 5555555555555554443211 2344444555555555555555555555554
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.88 E-value=1.6e-20 Score=174.53 Aligned_cols=266 Identities=11% Similarity=-0.012 Sum_probs=174.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC
Q 038622 305 TLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAG 384 (587)
Q Consensus 305 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 384 (587)
.++..+...|++++|..+++++.... |.+...+..++.++...|++++|...+++++... +.+...+..++.++...|
T Consensus 26 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~ 103 (327)
T 3cv0_A 26 EEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEH 103 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcC
Confidence 33444444444444444444444332 2333444444444444444444444444444431 123334444444444444
Q ss_pred CHHHHHHHHHHHHHCCCCCCcchHHH-------------H-HH-HHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHH
Q 038622 385 DIKRAADIVQNMTSNGCEPDIVTYGT-------------L-IG-GLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQA 449 (587)
Q Consensus 385 ~~~~A~~~~~~~~~~~~~~~~~~~~~-------------l-~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 449 (587)
++++|...++++....+. +...+.. + +. .+...|++++|..+++++.+..+. +...+..++..
T Consensus 104 ~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~ 181 (327)
T 3cv0_A 104 NANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHASLGVL 181 (327)
T ss_dssp CHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 444444444444443211 1111211 1 22 366778889999999988886443 66788888999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhH
Q 038622 450 LFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEET 529 (587)
Q Consensus 450 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 529 (587)
+...|++++|+..++++++.. +.+...+..++..+...|+ +++|+..++++++.. +.+..++..++.++...|++++
T Consensus 182 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 182 YNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNR-PQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHH
Confidence 999999999999999998874 6677788888888888888 999999999998843 2368888899999999999999
Q ss_pred HHHHHHHHHhcCCC------------C-CchhhhhhhHHHHHHHHHHHHhcchhhhccCch
Q 038622 530 LVELIDMVMDKAKF------------S-DRETSMVRGFLKIRKFQDALATFGDILDSRMPR 577 (587)
Q Consensus 530 A~~~~~~~~~~~~~------------~-~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 577 (587)
|...++++++..|. . ..+..++.++...|++++|...+++.++..+..
T Consensus 259 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 319 (327)
T 3cv0_A 259 AAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKE 319 (327)
T ss_dssp HHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHH
T ss_pred HHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchh
Confidence 99999999988887 2 346778888999999999999999888776444
No 29
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.88 E-value=2.6e-21 Score=182.84 Aligned_cols=264 Identities=11% Similarity=-0.024 Sum_probs=203.0
Q ss_pred HHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038622 265 EFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDG 344 (587)
Q Consensus 265 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 344 (587)
...+..++..+...|++++|+..|+++.... |.+..++..++.++...|++++|+..|+++.... |.+...+..++.+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3457777777777788888888887777765 5567777777778888888888888888777664 5567777777888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCC-----------HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCcchHHHHH
Q 038622 345 LCKSRRVEDAAQLMDQMIMEGLKPD-----------KFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCE-PDIVTYGTLI 412 (587)
Q Consensus 345 ~~~~~~~~~A~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~ 412 (587)
+...|++++|...+++++... |+ ...+..++..+...|++++|...++++....+. ++...+..++
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 888888888888888877642 22 122334577888899999999999999886332 1567888999
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCH
Q 038622 413 GGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPI 492 (587)
Q Consensus 413 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 492 (587)
.++...|++++|...++++.+..+. +..+|..++.++...|++++|+..|+++++.. |.+...+..++.++...|+ +
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~-~ 297 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGA-Y 297 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC-C
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC-H
Confidence 9999999999999999999887443 67889999999999999999999999999874 6678888899999999999 9
Q ss_pred HHHHHHHHHHHHcCCCC-------------CHHHHHHHHHHHHccCCHhHHHHHHHHH
Q 038622 493 GEAVDFVIEMLERGFLP-------------EFSSFYMLAEGLVSLGKEETLVELIDMV 537 (587)
Q Consensus 493 ~~A~~~~~~~~~~~~~p-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 537 (587)
++|+..++++++. .| +..++..++.++...|+.+.|....++.
T Consensus 298 ~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 298 REAVSNFLTALSL--QRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHHHHHHHHH--HHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHh--CcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 9999999999863 22 2567889999999999999988877663
No 30
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.87 E-value=1.4e-19 Score=163.42 Aligned_cols=275 Identities=12% Similarity=0.101 Sum_probs=209.5
Q ss_pred HHHHccCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 038622 273 DSLCSRGMLEEALKLLKEMESSGCARN--VVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRR 350 (587)
Q Consensus 273 ~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 350 (587)
+-....|++..|+..++.+.... |+ ......++++|...|+++.|+..++.. .+|+...+..+...+...++
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~--p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSS--PERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCS--HHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhcccCC--chhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCc
Confidence 34456788888888777655432 22 234456677888888888888766441 25566677777788888888
Q ss_pred HHHHHHHHHHHHHcCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 038622 351 VEDAAQLMDQMIMEGLKP-DKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLR 429 (587)
Q Consensus 351 ~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 429 (587)
.++|++.+++++..+..| +...+..++.++...|++++|+..+++ ..+...+..++.++.+.|++++|.+.++
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 888888888888765444 455666777888888888888888876 2467788888888999999999999999
Q ss_pred HHHHcCCCCChH-hH--HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 038622 430 SIQMKGIVLTPQ-AY--NPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERG 506 (587)
Q Consensus 430 ~~~~~~~~~~~~-~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 506 (587)
++.+.. |+.. .. ..++..+...|++++|..+|+++++.. |.+...+..++.++...|+ +++|+..++++++.
T Consensus 155 ~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~-~~eA~~~l~~al~~- 229 (291)
T 3mkr_A 155 KMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGR-WEAAEGVLQEALDK- 229 (291)
T ss_dssp HHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH-
T ss_pred HHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh-
Confidence 988864 3332 11 122334445689999999999999984 7788889999999999999 99999999999984
Q ss_pred CCC-CHHHHHHHHHHHHccCCHhH-HHHHHHHHHhcCCCCCchhhhhhhHHHHHHHHHHHHhcc
Q 038622 507 FLP-EFSSFYMLAEGLVSLGKEET-LVELIDMVMDKAKFSDRETSMVRGFLKIRKFQDALATFG 568 (587)
Q Consensus 507 ~~p-~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 568 (587)
.| ++.++..++.++...|+.++ +.++++++++.+|.+.... ....+.+.|++|...|.
T Consensus 230 -~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~---d~~~~~~~fd~~~~~~~ 289 (291)
T 3mkr_A 230 -DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK---EYRAKENDFDRLVLQYA 289 (291)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH---HHHHHHHHHHHHHHHHS
T ss_pred -CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH---HHHHHHHHHHHHHHHcC
Confidence 46 79999999999999999976 5789999999999875433 34668888888887774
No 31
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.86 E-value=5.7e-20 Score=170.84 Aligned_cols=265 Identities=9% Similarity=-0.001 Sum_probs=175.3
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 038622 269 NMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKS 348 (587)
Q Consensus 269 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 348 (587)
...+..+...|++++|+.+++++.+.. +.+...+..++.++...|++++|...++++.... |.+...+..++..+...
T Consensus 25 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~ 102 (327)
T 3cv0_A 25 MEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 102 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHc
Confidence 334444444444444444444444332 2333344444444444444444444444444432 33344444444444444
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHhhHHH-------------H-HH-HHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHH
Q 038622 349 RRVEDAAQLMDQMIMEGLKPDKFTYNS-------------L-LT-YYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIG 413 (587)
Q Consensus 349 ~~~~~A~~~~~~~~~~~~~~~~~~~~~-------------l-~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 413 (587)
|++++|...++++..... .+...+.. + .. .+...|++++|...++++.+..+. +...+..++.
T Consensus 103 ~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~ 180 (327)
T 3cv0_A 103 HNANAALASLRAWLLSQP-QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHASLGV 180 (327)
T ss_dssp TCHHHHHHHHHHHHHTST-TTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCC-ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHH
Confidence 444444444444444211 11111111 1 22 366778889999999988876433 6678888899
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHH
Q 038622 414 GLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIG 493 (587)
Q Consensus 414 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 493 (587)
.+...|++++|...++++.+..+. +...+..++..+...|++++|+..++++++.. +.+...+..++..+...|+ ++
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~-~~ 257 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQ-YD 257 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcc-HH
Confidence 999999999999999998886433 56788999999999999999999999999874 6678888889999999999 99
Q ss_pred HHHHHHHHHHHcCCCCC-------------HHHHHHHHHHHHccCCHhHHHHHHHHHHhcCC
Q 038622 494 EAVDFVIEMLERGFLPE-------------FSSFYMLAEGLVSLGKEETLVELIDMVMDKAK 542 (587)
Q Consensus 494 ~A~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 542 (587)
+|...++++++.. |+ ..++..++.++...|++++|...++++++..|
T Consensus 258 ~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 317 (327)
T 3cv0_A 258 LAAKQLVRAIYMQ--VGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFA 317 (327)
T ss_dssp HHHHHHHHHHHHH--TTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHH
T ss_pred HHHHHHHHHHHhC--CccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 9999999998743 43 67888999999999999999999987766544
No 32
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.84 E-value=1e-18 Score=168.56 Aligned_cols=219 Identities=11% Similarity=0.024 Sum_probs=100.9
Q ss_pred HHHHHHHHHHccC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCCHhhHH
Q 038622 302 TYNTLIDGFCKLK---RIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKS----RRVEDAAQLMDQMIMEGLKPDKFTYN 374 (587)
Q Consensus 302 ~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~~~~ 374 (587)
++..++.+|...| ++++|+..|++....+ +++...+..+...|... +++++|...|+++. . .+...+.
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~ 252 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWV 252 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHH
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHH
Confidence 3444444444444 4444444444444443 33333333344444332 34555555555544 1 1233333
Q ss_pred HHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcC-----ChHHHHHHHHHHHHcCCCCChHhHHHH
Q 038622 375 SLLTY-Y--CRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAG-----RVEVASKLLRSIQMKGIVLTPQAYNPV 446 (587)
Q Consensus 375 ~l~~~-~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l 446 (587)
.+... + ...+++++|...|++..+.| +...+..++.+|. .| ++++|..+|++.. . .++.++..+
T Consensus 253 ~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~L 324 (452)
T 3e4b_A 253 SLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYL 324 (452)
T ss_dssp HHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHH
Confidence 44433 2 23455555555555555433 3344445555444 33 5566666655555 1 244555555
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038622 447 IQALFR----RKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCN----GGGPIGEAVDFVIEMLERGFLPEFSSFYMLA 518 (587)
Q Consensus 447 ~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 518 (587)
+..|.. ..++++|...|+++.+.| .++ ....++..|.. ..+ .++|..+|+++.+.| +..+...+.
T Consensus 325 g~~y~~G~g~~~d~~~A~~~~~~Aa~~g-~~~--A~~~Lg~~y~~G~g~~~d-~~~A~~~~~~A~~~g---~~~a~~~l~ 397 (452)
T 3e4b_A 325 GQIYRRGYLGKVYPQKALDHLLTAARNG-QNS--ADFAIAQLFSQGKGTKPD-PLNAYVFSQLAKAQD---TPEANDLAT 397 (452)
T ss_dssp HHHHHTTTTSSCCHHHHHHHHHHHHTTT-CTT--HHHHHHHHHHSCTTBCCC-HHHHHHHHHHHHTTC---CHHHHHHHH
T ss_pred HHHHHCCCCCCcCHHHHHHHHHHHHhhC-hHH--HHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 555544 236666666666666544 222 22334433332 123 666666666666543 222222233
Q ss_pred HHH--HccCCHhHHHHHHHHHHhc
Q 038622 519 EGL--VSLGKEETLVELIDMVMDK 540 (587)
Q Consensus 519 ~~~--~~~g~~~~A~~~~~~~~~~ 540 (587)
.+. ...++.++|....++..+.
T Consensus 398 ~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 398 QLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHh
Confidence 322 2334555666666555444
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.84 E-value=2e-18 Score=155.75 Aligned_cols=273 Identities=11% Similarity=0.039 Sum_probs=197.4
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCCH--HhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 038622 238 QGLCLTSNFDVAMELFQEMKTKGCQPDE--FTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKR 315 (587)
Q Consensus 238 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 315 (587)
+.....|++..|+..++..... .|+. .....++++|...|+++.|+..++. . .+|+..++..++..+...++
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCc
Confidence 3455678888888877765443 3332 3456667888888888888876644 1 25666777778888888888
Q ss_pred HHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 038622 316 IEEAEEIFDEMEIQGI-SRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQ 394 (587)
Q Consensus 316 ~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 394 (587)
.++|++.++++...+. |.+...+..++.++...|++++|+..+++ +.+...+..++.++...|++++|...++
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 154 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK 154 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 8888888888876642 45666777777888888888888888876 3466778888888888888888888888
Q ss_pred HHHHCCCCCCcchHHHH----HHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 038622 395 NMTSNGCEPDIVTYGTL----IGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKA 470 (587)
Q Consensus 395 ~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 470 (587)
++.+.+ |+.. ...+ +..+...|++++|..+|+++.+..+ .+...++.++.++...|++++|...|+++++..
T Consensus 155 ~~~~~~--p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 155 KMQDQD--EDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHC--TTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhhC--cCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 888753 4432 2222 2334455889999999999888743 367888889999999999999999999998875
Q ss_pred CCCCHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHH
Q 038622 471 DPPDALTYKHVFRGLCNGGGPIG-EAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELI 534 (587)
Q Consensus 471 ~~~~~~~~~~l~~~~~~~~~~~~-~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 534 (587)
|.+..++..++..+...|+ .+ .+.++++++++ +.| ++.+. +...+.+.++++..-|
T Consensus 231 -p~~~~~l~~l~~~~~~~g~-~~eaa~~~~~~~~~--~~P~~~~~~----d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 231 -SGHPETLINLVVLSQHLGK-PPEVTNRYLSQLKD--AHRSHPFIK----EYRAKENDFDRLVLQY 288 (291)
T ss_dssp -TTCHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHH--HCTTCHHHH----HHHHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHH--hCCCChHHH----HHHHHHHHHHHHHHHc
Confidence 6778888888888888888 55 46788888887 457 44433 2345555555555433
No 34
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.84 E-value=6.2e-19 Score=170.02 Aligned_cols=379 Identities=12% Similarity=0.041 Sum_probs=248.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCH---HHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 038622 166 LISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQV---EEATELARVLTSKGILPDVCTFNSLIQGLCL 242 (587)
Q Consensus 166 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 242 (587)
++..+.+.|++++|+++|+++...+ ++.++..++..+...|+. ++|+.+|++..+. ++..+..+...+..
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 4555666677777777777666554 344555566666666666 6777777666643 44455555554444
Q ss_pred cC-----ChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCCh---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 038622 243 TS-----NFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGML---EEALKLLKEMESSGCARNVVTYNTLIDGFCKLK 314 (587)
Q Consensus 243 ~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 314 (587)
.+ ++++|..+|++..+.+ .+ ..+..++..|...+.. .++.+.+......+ +......++..|...+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g-~~--~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANG-EG--NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQG 155 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTT-CS--SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHHHCC-CH--HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 43 6677777777777765 22 2566666666655433 33555555555544 3446677778888777
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc----CCHH
Q 038622 315 RIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSR---RVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRA----GDIK 387 (587)
Q Consensus 315 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~ 387 (587)
.++++......+...-...++..+..+..+|...| ++++|+..|+++...| .++...+..+...|... ++++
T Consensus 156 ~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~ 234 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEK 234 (452)
T ss_dssp CGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHH
T ss_pred CcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHH
Confidence 55444443222222211234448888999999999 9999999999999976 34556556777777654 7999
Q ss_pred HHHHHHHHHHHCCCCCCcchHHHHHHH-H--HhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC-----CHHHH
Q 038622 388 RAADIVQNMTSNGCEPDIVTYGTLIGG-L--CKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRK-----RTTEA 459 (587)
Q Consensus 388 ~A~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A 459 (587)
+|...|++.. . .+...+..++.+ + ...+++++|..+|++..+.+ +..++..++..|. .| ++++|
T Consensus 235 ~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A 306 (452)
T 3e4b_A 235 TAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAA 306 (452)
T ss_dssp HHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred HHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence 9999999988 3 366778888887 4 46899999999999999864 6788889998888 55 99999
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHhHHH
Q 038622 460 MRLFREMMEKADPPDALTYKHVFRGLCN----GGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVS----LGKEETLV 531 (587)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~ 531 (587)
++.|+++. . .+......++..+.. ..+ +++|..+|+++.+.| ++.+...|+.+|.. ..++++|.
T Consensus 307 ~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d-~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~ 378 (452)
T 3e4b_A 307 EAHFEKAV-G---REVAADYYLGQIYRRGYLGKVY-PQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAY 378 (452)
T ss_dssp HHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCC-HHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHH
T ss_pred HHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcC-HHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHH
Confidence 99999998 3 356667777766655 225 999999999999754 56677889999875 46899999
Q ss_pred HHHHHHHhcCCCCC-chhhhhhhHHHHHHHHHHHHhcchhhhcc
Q 038622 532 ELIDMVMDKAKFSD-RETSMVRGFLKIRKFQDALATFGDILDSR 574 (587)
Q Consensus 532 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 574 (587)
.+++++.+.++... .....+......++..+|....+++..+.
T Consensus 379 ~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~~ 422 (452)
T 3e4b_A 379 VFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELAAR 422 (452)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc
Confidence 99999999876432 12333334456678888888888877764
No 35
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.84 E-value=7.3e-19 Score=161.17 Aligned_cols=238 Identities=16% Similarity=0.154 Sum_probs=57.6
Q ss_pred hcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHH
Q 038622 67 EEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALE 146 (587)
Q Consensus 67 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 146 (587)
+.|++++|.++++++ +++.+|..++.++.+.|++++|++.|.+. +|...|..++..+...|++++|+.
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 344555555555554 12235555555555555555555555331 234455555555555555555555
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCC
Q 038622 147 VMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGI 226 (587)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 226 (587)
+++...+. .+++.+...++.+|.+.|+++++.++++ .|+..+|..++..|...|.+++|...|..+
T Consensus 83 yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 83 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 44444432 2234444455555555555555554442 233345555555555555555555555433
Q ss_pred CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 038622 227 LPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTL 306 (587)
Q Consensus 227 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 306 (587)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. ..+.-...+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHH
Confidence 23455555555555555555555544 134455555555555555555533222211 122222334
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038622 307 IDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLC 346 (587)
Q Consensus 307 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 346 (587)
+..|.+.|.+++|+.+++...... +.....|..+..+|+
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ 252 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYS 252 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHH
Confidence 444555555555555555444333 333444444444443
No 36
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.83 E-value=1.1e-18 Score=159.91 Aligned_cols=284 Identities=14% Similarity=0.148 Sum_probs=132.5
Q ss_pred HHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 038622 31 CKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDAL 110 (587)
Q Consensus 31 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 110 (587)
-+.|++++|.++++++. ++.+|..++.++.+.|++++|++.|.++ ++...|..++..+...|++++|+
T Consensus 14 ~~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 35788999999999883 3459999999999999999999999653 35568888899999999999999
Q ss_pred HHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038622 111 SFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRD 190 (587)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 190 (587)
.+++...+. .+++.+...++.+|.+.|++.++.++++ .|+..+|..++..|...|.+++|...|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 988877764 4557788889999999999999888774 367779999999999999999999999975
Q ss_pred CCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHH
Q 038622 191 CSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNM 270 (587)
Q Consensus 191 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 270 (587)
..|..++.++.+.|++++|++.++++ .++.+|..++.+|...|+++.|......+ ...+.-...
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~ 212 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEE 212 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHH
Confidence 47889999999999999999999988 27889999999999999999996655432 234444556
Q ss_pred HHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH-cCCCC------CHHHHHHHHH
Q 038622 271 LIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEI-QGISR------NSVTYNTLID 343 (587)
Q Consensus 271 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~------~~~~~~~l~~ 343 (587)
++..|.+.|.+++|+.+++..+... +-....|..++.+|++- ++++..+.++.... .++|+ +...|..+..
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ 290 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVF 290 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 8889999999999999999998776 56677888888777764 34444444433221 12232 4567888888
Q ss_pred HHHhcCCHHHHHHH
Q 038622 344 GLCKSRRVEDAAQL 357 (587)
Q Consensus 344 ~~~~~~~~~~A~~~ 357 (587)
.|...++++.|...
T Consensus 291 ly~~~~e~d~A~~t 304 (449)
T 1b89_A 291 LYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHTTCHHHHHHH
T ss_pred HHHhhchHHHHHHH
Confidence 88888999888764
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.82 E-value=1e-18 Score=150.83 Aligned_cols=196 Identities=14% Similarity=0.001 Sum_probs=108.1
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHH
Q 038622 369 DKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQ 448 (587)
Q Consensus 369 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 448 (587)
+...+..++..+...|++++|...++++++.++. +...+..++.++...|++++|...++++.+..+. +...+..++.
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHH
Confidence 3444555555555555555555555555554322 3445555555555555555555555555554322 3445555555
Q ss_pred HHHhc-----------CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 038622 449 ALFRR-----------KRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYML 517 (587)
Q Consensus 449 ~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 517 (587)
++... |++++|+..|+++++.. |.+...+..++.++...|+ +++|+..++++++.+ .++.++..+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGE-RDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhcc--cchHHHHHH
Confidence 55555 66666666666666653 4455566666666666666 666666666666654 556666666
Q ss_pred HHHHHccCCHhHHHHHHHHHHhcCCCC-CchhhhhhhHHHHHHHHHHHHhcchh
Q 038622 518 AEGLVSLGKEETLVELIDMVMDKAKFS-DRETSMVRGFLKIRKFQDALATFGDI 570 (587)
Q Consensus 518 ~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~ 570 (587)
+.+|...|++++|+..++++++..|.. +.+..++.++...|++++|+..|+++
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666666666777776676666666655 33556666666666666666666554
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.80 E-value=4.2e-18 Score=146.92 Aligned_cols=200 Identities=15% Similarity=0.057 Sum_probs=152.0
Q ss_pred CCCHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHH
Q 038622 17 KPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVL 96 (587)
Q Consensus 17 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 96 (587)
|++...+..+...+.+.|++++|+..|+.+++.. |.++..+..++..+.+.|++++|+..++++++.+ |.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 6777888888889999999999999999988876 7788889999999999999999999999998886 6677788888
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHH
Q 038622 97 VHGFCKE-----------GRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNS 165 (587)
Q Consensus 97 ~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 165 (587)
+.++... |++++|+..++++++.. |.+...+..++.++...|++++|++.|+++++.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 8888888 88888888888888763 4456778888888888888888888888888765 56777788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 038622 166 LISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLT 222 (587)
Q Consensus 166 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 222 (587)
++.++...|++++|+..|++++..+ |.+..++..++.++...|++++|+..+++..
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 8888888888888888888887775 5567777888888888888888888777654
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.80 E-value=1.8e-17 Score=148.14 Aligned_cols=226 Identities=16% Similarity=0.173 Sum_probs=170.8
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CC----HhhHH
Q 038622 301 VTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLK--PD----KFTYN 374 (587)
Q Consensus 301 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~----~~~~~ 374 (587)
..+..++..+...|++++|+..|+++.... .+...+..++.++...|++++|...+++++..... ++ ...+.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 456666677777777777777777776665 55667777777777777777777777777653211 11 45677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC
Q 038622 375 SLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRK 454 (587)
Q Consensus 375 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 454 (587)
.++.++...|++++|...++++... .|+ ...+...|++++|...++++....+. +...+..++..+...|
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~-------~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTE--HRT-------ADILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--CCC-------HHHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc--Cch-------hHHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhc
Confidence 7777788888888888888887774 233 23456667888888888888875322 4567888888899999
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHH
Q 038622 455 RTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELI 534 (587)
Q Consensus 455 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 534 (587)
++++|+..++++++.. +.+...+..++..+...|+ +++|+..++++++.. +.++.++..++.++...|++++|...+
T Consensus 154 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMS-FPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 9999999999998874 6677888888888888888 999999999998843 336888888999999999999999999
Q ss_pred HHHHhcC
Q 038622 535 DMVMDKA 541 (587)
Q Consensus 535 ~~~~~~~ 541 (587)
+++++..
T Consensus 231 ~~a~~~~ 237 (258)
T 3uq3_A 231 DAARTKD 237 (258)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 9998887
No 40
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.79 E-value=3.1e-17 Score=152.79 Aligned_cols=245 Identities=9% Similarity=0.047 Sum_probs=187.3
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 038622 300 VVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRR-VEDAAQLMDQMIMEGLKPDKFTYNSLLT 378 (587)
Q Consensus 300 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 378 (587)
..++..++.++...|++++|+..+++++..+ |.+...|..++.++...|+ +++|+..+++++.... .+...|..++.
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
Confidence 3456667777777888888888888887765 5567778888888888886 8888888888887532 25667888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh-cCCHH
Q 038622 379 YYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFR-RKRTT 457 (587)
Q Consensus 379 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~ 457 (587)
++...|++++|+..++++++.++. +...|..++.++...|++++|+..++++++.++. +..+|+.++.++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 888888888888888888876544 6777888888888888888888888888887554 67888888888888 55557
Q ss_pred HH-----HHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccC-----
Q 038622 458 EA-----MRLFREMMEKADPPDALTYKHVFRGLCNGGG-PIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLG----- 525 (587)
Q Consensus 458 ~A-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g----- 525 (587)
+| +..|++++... |.+...|..+..++...|. ++++|++.+.++ + ..| +..++..++++|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~--~~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q--PSHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T--TTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c--cCCCCHHHHHHHHHHHHHHhccccc
Confidence 77 58888888874 6677788888888887772 278898888887 4 345 6788888999988874
Q ss_pred ---C-HhHHHHHHHHH-HhcCCCCC-chhhhhh
Q 038622 526 ---K-EETLVELIDMV-MDKAKFSD-RETSMVR 552 (587)
Q Consensus 526 ---~-~~~A~~~~~~~-~~~~~~~~-~~~~~~~ 552 (587)
+ +++|+++++++ .+.+|... .|..++.
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~ 361 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDTIRKEYWRYIGR 361 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 2 58899999998 88888653 3444443
No 41
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.79 E-value=1.2e-17 Score=149.31 Aligned_cols=226 Identities=12% Similarity=0.100 Sum_probs=198.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CC----cchH
Q 038622 335 SVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCE--PD----IVTY 408 (587)
Q Consensus 335 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~----~~~~ 408 (587)
...+..++..+...|++++|...+++++... .+...+..++.++...|++++|...++++++.... ++ ...+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4577888999999999999999999999976 67889999999999999999999999998874221 11 4778
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhC
Q 038622 409 GTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNG 488 (587)
Q Consensus 409 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 488 (587)
..++.++...|++++|...++++... .|+ ...+...|++++|...++++.... +.+...+..++..+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~-------~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRT-------ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCC-------HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cch-------hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 89999999999999999999999985 344 345667788999999999999864 55667788899999999
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC-CchhhhhhhHHHHHHHHHHHHhc
Q 038622 489 GGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS-DRETSMVRGFLKIRKFQDALATF 567 (587)
Q Consensus 489 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~ 567 (587)
|+ +++|+..++++++.. +.++.++..++.++...|++++|+..++++++..|.. ..+..++.++.+.|++++|+..|
T Consensus 153 ~~-~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SD-WPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TC-HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cC-HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99 999999999999853 3378999999999999999999999999999999886 45888999999999999999999
Q ss_pred chhhhcc
Q 038622 568 GDILDSR 574 (587)
Q Consensus 568 ~~~~~~~ 574 (587)
+++++..
T Consensus 231 ~~a~~~~ 237 (258)
T 3uq3_A 231 DAARTKD 237 (258)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 9999987
No 42
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.78 E-value=2.9e-17 Score=152.99 Aligned_cols=237 Identities=12% Similarity=0.089 Sum_probs=203.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCcchHHHHH
Q 038622 334 NSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGD-IKRAADIVQNMTSNGCEPDIVTYGTLI 412 (587)
Q Consensus 334 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~l~ 412 (587)
....|..+..++...|++++|+..+++++... +.+...|..++.++...|+ +++|+..+++++..++. +...|..++
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHH
Confidence 34677888888999999999999999999863 2357789999999999996 99999999999997554 678999999
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCH
Q 038622 413 GGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPI 492 (587)
Q Consensus 413 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 492 (587)
.++...|++++|+..++++++.++. +..+|..++.++...|++++|+..|+++++.+ |.+...|..++.++...++..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999997655 77899999999999999999999999999985 778889999999998844425
Q ss_pred HHH-----HHHHHHHHHcCCCC-CHHHHHHHHHHHHccC--CHhHHHHHHHHHHhcCCCCC-chhhhhhhHHHHH-----
Q 038622 493 GEA-----VDFVIEMLERGFLP-EFSSFYMLAEGLVSLG--KEETLVELIDMVMDKAKFSD-RETSMVRGFLKIR----- 558 (587)
Q Consensus 493 ~~A-----~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----- 558 (587)
++| +..++++++ +.| +..+|..++.++...| ++++|++.++++ +..|... .+..++.+|.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~ 328 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCD 328 (382)
T ss_dssp SHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhccccc
Confidence 888 589999998 457 7889999999999988 699999999998 6666653 4678888898875
Q ss_pred ----HHHHHHHhcchh-hhccCch
Q 038622 559 ----KFQDALATFGDI-LDSRMPR 577 (587)
Q Consensus 559 ----~~~~A~~~~~~~-~~~~~~~ 577 (587)
.+++|+..|+++ .+..+..
T Consensus 329 ~~~~~~~~A~~~~~~l~~~~DP~r 352 (382)
T 2h6f_A 329 NKEDILNKALELCEILAKEKDTIR 352 (382)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred chHHHHHHHHHHHHHHHHHhCchh
Confidence 369999999999 6766543
No 43
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.78 E-value=2.7e-17 Score=148.25 Aligned_cols=243 Identities=13% Similarity=0.069 Sum_probs=178.3
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HhhHHHHH
Q 038622 300 VVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPD--KFTYNSLL 377 (587)
Q Consensus 300 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~ 377 (587)
...+...+..+...|++++|+..++++.... |.+...+..++.++...|++++|+..+++++..+..|+ ...+..++
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 3455667788888888888888888888765 45566788888888888888888888888887432222 22477788
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHH
Q 038622 378 TYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTT 457 (587)
Q Consensus 378 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 457 (587)
.++...|++++|...++++.+..+. +...+..++.++...|++++|...++++.+..+. +...+..++..+...++++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888875433 5677888888888888888888888888876332 5667777774444456888
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcC-CCCC------HHHHHHHHHHHHccCCHh
Q 038622 458 EAMRLFREMMEKADPPDALTYKHVFRGLCNGGGP--IGEAVDFVIEMLERG-FLPE------FSSFYMLAEGLVSLGKEE 528 (587)
Q Consensus 458 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~A~~~~~~~~~~~-~~p~------~~~~~~l~~~~~~~g~~~ 528 (587)
+|+..|+++++.. |.+...+..++..+...|+. +++|+..++++++.. -.|+ ..++..++.+|...|+++
T Consensus 160 ~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 160 KADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 8888888888864 55566666666666655531 566888888887531 0133 256777888888888888
Q ss_pred HHHHHHHHHHhcCCCCCc
Q 038622 529 TLVELIDMVMDKAKFSDR 546 (587)
Q Consensus 529 ~A~~~~~~~~~~~~~~~~ 546 (587)
+|+..++++++.+|.++.
T Consensus 239 ~A~~~~~~al~~~p~~~~ 256 (272)
T 3u4t_A 239 KADAAWKNILALDPTNKK 256 (272)
T ss_dssp HHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHhcCccHHH
Confidence 888888888888887643
No 44
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.78 E-value=9e-17 Score=144.75 Aligned_cols=230 Identities=11% Similarity=0.111 Sum_probs=100.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--cchHHHHHHHHHh
Q 038622 340 TLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPD--IVTYGTLIGGLCK 417 (587)
Q Consensus 340 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~ 417 (587)
..+..+...|++++|+..++++++.. +.+...+..++.++...|++++|+..+++++..+..|+ ...+..++.++..
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 33444444455555555555544431 11223444444444455555555555554444211111 1114444444455
Q ss_pred cCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHH
Q 038622 418 AGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVD 497 (587)
Q Consensus 418 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~ 497 (587)
.|++++|.+.++++.+..+. +...+..++.++...|++++|+..++++++.. |.+...+..++..+...++ +++|+.
T Consensus 87 ~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~-~~~A~~ 163 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKE-YVKADS 163 (272)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTC-HHHHHH
T ss_pred cccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHH-HHHHHH
Confidence 55555555555544443222 33444444555555555555555555444432 3333344444322222333 455555
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHccCC---HhHHHHHHHHHHhcC---CCC------CchhhhhhhHHHHHHHHHHH
Q 038622 498 FVIEMLERGFLP-EFSSFYMLAEGLVSLGK---EETLVELIDMVMDKA---KFS------DRETSMVRGFLKIRKFQDAL 564 (587)
Q Consensus 498 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~---~~~------~~~~~~~~~~~~~~~~~~A~ 564 (587)
.++++++. .| +...+..++.++...|+ +++|+..++++++.. |.+ ..+..++.+|.+.|++++|+
T Consensus 164 ~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 164 SFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 55555442 23 34444444444444444 444454444444432 211 12333444444445555555
Q ss_pred HhcchhhhccC
Q 038622 565 ATFGDILDSRM 575 (587)
Q Consensus 565 ~~~~~~~~~~~ 575 (587)
..|+++++..|
T Consensus 242 ~~~~~al~~~p 252 (272)
T 3u4t_A 242 AAWKNILALDP 252 (272)
T ss_dssp HHHHHHHHHCT
T ss_pred HHHHHHHhcCc
Confidence 55555544443
No 45
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.78 E-value=1.2e-15 Score=137.29 Aligned_cols=228 Identities=10% Similarity=-0.032 Sum_probs=175.9
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHhhH
Q 038622 298 RNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCK----SRRVEDAAQLMDQMIMEGLKPDKFTY 373 (587)
Q Consensus 298 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~ 373 (587)
.+..++..++..+...|++++|...|++... +.+...+..+...+.. .+++++|...|+++.+.+ +...+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 3455666777777777777777777777776 3355666777777777 788888888888877753 56677
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChHhHHH
Q 038622 374 NSLLTYYCR----AGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCK----AGRVEVASKLLRSIQMKGIVLTPQAYNP 445 (587)
Q Consensus 374 ~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 445 (587)
..++..+.. .+++++|+..+++..+.+ +...+..++..|.. .+++++|..+++++.+.+ +...+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 777777877 888888888888887753 56677788888887 888888888888888753 5667778
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 038622 446 VIQALFR----RKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCN----GGGPIGEAVDFVIEMLERGFLPEFSSFYML 517 (587)
Q Consensus 446 l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 517 (587)
++..+.. .+++++|+..|+++.+.+ +...+..++..+.. .++ +++|+..++++++.+ | +..+..+
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~-~~~A~~~~~~a~~~~--~-~~a~~~l 224 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKN-FKEALARYSKACELE--N-GGGCFNL 224 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCC-HHHHHHHHHHHHHTT--C-HHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcc-HHHHHHHHHHHHhCC--C-HHHHHHH
Confidence 8888887 888999999998888753 45666777777877 777 899999999988743 3 7778888
Q ss_pred HHHHHc----cCCHhHHHHHHHHHHhcCCCC
Q 038622 518 AEGLVS----LGKEETLVELIDMVMDKAKFS 544 (587)
Q Consensus 518 ~~~~~~----~g~~~~A~~~~~~~~~~~~~~ 544 (587)
+.+|.. .|++++|+.+++++.+.+|..
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 888888 889999999999998888753
No 46
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.77 E-value=6.9e-17 Score=145.82 Aligned_cols=246 Identities=9% Similarity=-0.014 Sum_probs=186.8
Q ss_pred HccCCHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHH
Q 038622 311 CKLKRIEEAEEIFDEMEIQGI---SRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIK 387 (587)
Q Consensus 311 ~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 387 (587)
...|++++|+..++++..... +.+...+..++..+...|++++|...|++++... +.+...+..++.++...|+++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 345678888888888776531 2245677778888888888888888888888753 335778888888888889999
Q ss_pred HHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038622 388 RAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMM 467 (587)
Q Consensus 388 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 467 (587)
+|...++++++..+. +...+..++.++...|++++|...++++.+.. |+..........+...|++++|...+.++.
T Consensus 95 ~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 95 AAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999888885433 56788888999999999999999999998853 343333344445567799999999998888
Q ss_pred hcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCC
Q 038622 468 EKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-----EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAK 542 (587)
Q Consensus 468 ~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 542 (587)
... +++...+ .++..+...++ .++|...++++++. .| +..++..++.+|...|++++|...++++++.+|
T Consensus 172 ~~~-~~~~~~~-~~~~~~~~~~~-~~~a~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 246 (275)
T 1xnf_A 172 EKS-DKEQWGW-NIVEFYLGNIS-EQTLMERLKADATD--NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV 246 (275)
T ss_dssp HHS-CCCSTHH-HHHHHHTTSSC-HHHHHHHHHHHCCS--HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred hcC-CcchHHH-HHHHHHHHhcC-HHHHHHHHHHHhcc--cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc
Confidence 863 4444444 46666777777 89999999998753 23 257888999999999999999999999999988
Q ss_pred CCCchhhhhhhHHHHHHHHHHHHhc
Q 038622 543 FSDRETSMVRGFLKIRKFQDALATF 567 (587)
Q Consensus 543 ~~~~~~~~~~~~~~~~~~~~A~~~~ 567 (587)
.. +..+..++...|++++|++.+
T Consensus 247 ~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 247 HN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TT--CHHHHHHHHHHHHHHHC----
T ss_pred hh--HHHHHHHHHHHHHHHhhHHHH
Confidence 65 344566788999999999887
No 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.77 E-value=3.4e-16 Score=140.91 Aligned_cols=233 Identities=7% Similarity=-0.053 Sum_probs=203.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCcch
Q 038622 332 SRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCR----AGDIKRAADIVQNMTSNGCEPDIVT 407 (587)
Q Consensus 332 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~ 407 (587)
+.++..+..+...+...|++++|...|+++.+. .+...+..++..+.. .+++++|...|++..+.+ +...
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a 76 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNG 76 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHH
Confidence 346778888999999999999999999999983 356778889999999 999999999999999864 6778
Q ss_pred HHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHHH
Q 038622 408 YGTLIGGLCK----AGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFR----RKRTTEAMRLFREMMEKADPPDALTYK 479 (587)
Q Consensus 408 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 479 (587)
+..++.+|.. .+++++|...++++.+.+ +..++..++..+.. .+++++|+..|+++.+.+ +...+.
T Consensus 77 ~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 150 (273)
T 1ouv_A 77 CHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCT 150 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHH
Confidence 8999999999 999999999999999863 77889999999999 999999999999999965 566677
Q ss_pred HHHHHHHh----CCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHhHHHHHHHHHHhcCCCCCchhhhh
Q 038622 480 HVFRGLCN----GGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVS----LGKEETLVELIDMVMDKAKFSDRETSMV 551 (587)
Q Consensus 480 ~l~~~~~~----~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 551 (587)
.++..+.. .++ +++|+..++++++. .++.++..++.+|.. .+++++|+.+++++++.++ .+....++
T Consensus 151 ~lg~~~~~~~~~~~~-~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~-~~a~~~l~ 225 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKD-LKKALASYDKACDL---KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN-GGGCFNLG 225 (273)
T ss_dssp HHHHHHHHTSSSCCC-HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred HHHHHHHcCCCCCCC-HHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC-HHHHHHHH
Confidence 78888877 788 99999999999985 357888999999999 9999999999999999876 45678888
Q ss_pred hhHHH----HHHHHHHHHhcchhhhccCchhhhh
Q 038622 552 RGFLK----IRKFQDALATFGDILDSRMPRKTFR 581 (587)
Q Consensus 552 ~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~ 581 (587)
.+|.. .+++++|+..|+++.+.++......
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~ 259 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDI 259 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHHH
Confidence 88988 9999999999999999987655443
No 48
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.76 E-value=4.9e-14 Score=140.09 Aligned_cols=454 Identities=9% Similarity=0.017 Sum_probs=217.6
Q ss_pred hhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC---HHHHHHH
Q 038622 36 IRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGR---IEDALSF 112 (587)
Q Consensus 36 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~ 112 (587)
....+..|++.+..+ |.|...|..++..+.+.++++.+..+|++++.. .|.....|...+..-.+.|+ ++.+..+
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 344455566666555 667777777777777777777777777777766 36666777777777667676 7777777
Q ss_pred HHHHHHCC-CCCChhhHHHHHHHHHhcCCh--------HHHHHHHHHHHh-CCC-CCC-cccHHHHHHHHHh--------
Q 038622 113 IQEMVSEG-FNPDQFTYNTLVNGLCKVGHV--------KQALEVMDMMLQ-EGF-DPD-VFTYNSLISGLCK-------- 172 (587)
Q Consensus 113 ~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~~-~~~~~~l~~~~~~-------- 172 (587)
|++.+... .+|++..|...+....+.++. +.+.++|+.++. .|. .++ ...|...+.....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 77777652 126666777666655554443 233456665554 233 333 2344444433221
Q ss_pred -cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHH
Q 038622 173 -LGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAME 251 (587)
Q Consensus 173 -~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 251 (587)
.++.+.+..+|+.++.........+|...... +.. . + ..+-..++.- ...+++.|..
T Consensus 206 eq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~f-------e~~-------~--~----~~~a~~~~~e--~~~~y~~Ar~ 263 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQW-------EQD-------V--N----QLTARRHIGE--LSAQYMNARS 263 (679)
T ss_dssp HHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHH-------HHH-------H--C----TTTHHHHHHH--HHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHH-------HHh-------c--C----cchHHHHHHH--hhHHHHHHHH
Confidence 22345566666665532101001111111100 000 0 0 0000000000 1113333444
Q ss_pred HHHHHHHc--CC----CCC-------------------HHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 038622 252 LFQEMKTK--GC----QPD-------------------EFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTL 306 (587)
Q Consensus 252 ~~~~~~~~--~~----~~~-------------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 306 (587)
.+.++... ++ +.. ...|...+..-...+.- ....
T Consensus 264 ~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~----------------l~~~----- 322 (679)
T 4e6h_A 264 LYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLE----------------LSDD----- 322 (679)
T ss_dssp HHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTC----------------CCHH-----
T ss_pred HHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCcc----------------ccch-----
Confidence 44332211 00 000 01122222111111000 0000
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHcCCCCCHhhHHHHHHHHHhcCC
Q 038622 307 IDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAA-QLMDQMIMEGLKPDKFTYNSLLTYYCRAGD 385 (587)
Q Consensus 307 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 385 (587)
...+.+..+|++++... +..+..|...+..+...|+.++|. .+|++++.. .+.+...+..++......|+
T Consensus 323 -------~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~ 393 (679)
T 4e6h_A 323 -------LHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTK 393 (679)
T ss_dssp -------HHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTC
T ss_pred -------hhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCC
Confidence 00122334455544432 445555555555555555555554 555555543 22233344445555555555
Q ss_pred HHHHHHHHHHHHHCCC---------CC------------CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHH
Q 038622 386 IKRAADIVQNMTSNGC---------EP------------DIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYN 444 (587)
Q Consensus 386 ~~~A~~~~~~~~~~~~---------~~------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 444 (587)
++.|..+|+.++.... .| ...+|...+....+.|+.+.|..+|.++.+.........|.
T Consensus 394 ~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi 473 (679)
T 4e6h_A 394 IPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYL 473 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHH
Confidence 6666655555544200 01 11245555555556666666666666666531111234444
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHH
Q 038622 445 PVIQALFRRK-RTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP--EFSSFYMLAEGL 521 (587)
Q Consensus 445 ~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~ 521 (587)
..+..-...+ +++.|.++|+.+++. .+.+...+...+......|+ .+.|..+|++++....++ ....|...+..-
T Consensus 474 ~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~-~~~AR~lferal~~~~~~~~~~~lw~~~~~fE 551 (679)
T 4e6h_A 474 ENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNE-ESQVKSLFESSIDKISDSHLLKMIFQKVIFFE 551 (679)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 4444333433 366666666666665 34455555555555555566 666666666666532111 234555555555
Q ss_pred HccCCHhHHHHHHHHHHhcCCCCC
Q 038622 522 VSLGKEETLVELIDMVMDKAKFSD 545 (587)
Q Consensus 522 ~~~g~~~~A~~~~~~~~~~~~~~~ 545 (587)
.+.|+.+.+..+.+++.+..|+++
T Consensus 552 ~~~G~~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 552 SKVGSLNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCc
Confidence 566666666666666666666654
No 49
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.75 E-value=7e-14 Score=138.98 Aligned_cols=148 Identities=11% Similarity=0.028 Sum_probs=115.4
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHH
Q 038622 4 VETAHADMVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGN---LDGALRIREQ 80 (587)
Q Consensus 4 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~ 80 (587)
-+..+++.+..+ |-|...|..+++.+.+.++++.+..+|+++...- |.....|...+..-.+.|+ ++.+..+|++
T Consensus 51 ~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeR 128 (679)
T 4e6h_A 51 VIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEPVLAR 128 (679)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHH
Confidence 345667777776 7899999999999999999999999999999874 7889999999999999999 9999999999
Q ss_pred HHHcCC-CCChhhHHHHHHHHHhcCCH--------HHHHHHHHHHHH-CCC-CC-ChhhHHHHHHHHHh---------cC
Q 038622 81 MVEHGC-LVTNVTVNVLVHGFCKEGRI--------EDALSFIQEMVS-EGF-NP-DQFTYNTLVNGLCK---------VG 139 (587)
Q Consensus 81 ~~~~~~-~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~~---------~~ 139 (587)
++...+ +++...|...+....+.++. +.+.++|+.++. .|. .+ +...|...+..... ++
T Consensus 129 al~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~ 208 (679)
T 4e6h_A 129 CLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQ 208 (679)
T ss_dssp HTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHh
Confidence 998741 37888898888776665553 345578887765 354 34 34678887776542 34
Q ss_pred ChHHHHHHHHHHHh
Q 038622 140 HVKQALEVMDMMLQ 153 (587)
Q Consensus 140 ~~~~a~~~~~~~~~ 153 (587)
+++.+..+|+.++.
T Consensus 209 ~~~~~R~iy~raL~ 222 (679)
T 4e6h_A 209 RVQYIRKLYKTLLC 222 (679)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 57789999999886
No 50
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.73 E-value=2.4e-16 Score=151.21 Aligned_cols=293 Identities=14% Similarity=0.106 Sum_probs=172.6
Q ss_pred HhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHc----CC-CCCHH
Q 038622 266 FTYNMLIDSLCSRGMLEEALKLLKEMESSGCARN----VVTYNTLIDGFCKLKRIEEAEEIFDEMEIQ----GI-SRNSV 336 (587)
Q Consensus 266 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~ 336 (587)
..+...+..+...|++++|+..|+++.... +.+ ..++..++.++...|++++|...++++... +. +....
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 334444444555555555555555554432 122 123444455555555555555555543221 10 11133
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HhhHHHHHHHHHhcCC--------------------HHHHHH
Q 038622 337 TYNTLIDGLCKSRRVEDAAQLMDQMIMEGL-KPD----KFTYNSLLTYYCRAGD--------------------IKRAAD 391 (587)
Q Consensus 337 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~~A~~ 391 (587)
.+..++..+...|++++|...+++++.... .++ ..++..++..+...|+ +++|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 445555555666666666666655554200 011 2255566666666666 777777
Q ss_pred HHHHHHHC----CCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----hHhHHHHHHHHHhcCCHHHHHH
Q 038622 392 IVQNMTSN----GCEP-DIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIV-LT----PQAYNPVIQALFRRKRTTEAMR 461 (587)
Q Consensus 392 ~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~ 461 (587)
.+++.... +..| ...++..++..+...|++++|...++++.+.... ++ ...+..++.++...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 77665442 1111 1345677788888888888888888887654111 11 1367788888888999999999
Q ss_pred HHHHHHhcCC-CCC----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-CC----CHHHHHHHHHHHHccCCHhHHH
Q 038622 462 LFREMMEKAD-PPD----ALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGF-LP----EFSSFYMLAEGLVSLGKEETLV 531 (587)
Q Consensus 462 ~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~-~p----~~~~~~~l~~~~~~~g~~~~A~ 531 (587)
.++++++... .++ ...+..++..+...|+ +++|...++++++... .+ ...++..++.+|...|++++|.
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD-YEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9888876410 111 4466677888888888 9999999988875310 11 1557788899999999999999
Q ss_pred HHHHHHHhcCCCCCc-------hhhhhhhHHHHHHH
Q 038622 532 ELIDMVMDKAKFSDR-------ETSMVRGFLKIRKF 560 (587)
Q Consensus 532 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~ 560 (587)
..++++++..+.... ...++.++...|+.
T Consensus 328 ~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 328 HFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 999998876543322 34444445555543
No 51
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.73 E-value=2e-15 Score=134.10 Aligned_cols=207 Identities=11% Similarity=-0.001 Sum_probs=158.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHH
Q 038622 335 SVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGG 414 (587)
Q Consensus 335 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 414 (587)
...+..++..+...|++++|...+++++... +.+...+..++.++...|++++|...++++.+.... +...+..++.+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH
Confidence 4556667777777888888888888877753 335667777777888888888888888887775332 56677778888
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHH
Q 038622 415 LCKAGRVEVASKLLRSIQMKGIVL-TPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIG 493 (587)
Q Consensus 415 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 493 (587)
+...|++++|.++++++...+..| +...+..++.++...|++++|...++++++.. +.+...+..++..+...|+ ++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~-~~ 192 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKERE-YV 192 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTC-HH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCC-HH
Confidence 888888888888888887722223 34677788888888888999998888888864 5567778888888888888 89
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCc
Q 038622 494 EAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDR 546 (587)
Q Consensus 494 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 546 (587)
+|...++++++.. +.+...+..++.++...|++++|.+.++++.+..|.+..
T Consensus 193 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 244 (252)
T 2ho1_A 193 PARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLE 244 (252)
T ss_dssp HHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHH
T ss_pred HHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHH
Confidence 9999998888742 336778888888888899999999999998888887643
No 52
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.73 E-value=3.7e-16 Score=138.06 Aligned_cols=206 Identities=15% Similarity=0.124 Sum_probs=148.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHH
Q 038622 334 NSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIG 413 (587)
Q Consensus 334 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 413 (587)
....+..++..+...|++++|...+++++... +.+...+..++.++...|++++|...++++...... +...+..++.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHH
Confidence 34556666777777888888888888877642 335667777778888888888888888887775332 5667778888
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHH
Q 038622 414 GLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIG 493 (587)
Q Consensus 414 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 493 (587)
++...|++++|.++++++.+..+. +...+..++..+...|++++|+..++++++.. +.+...+..++..+...|+ ++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~-~~ 176 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGM-LD 176 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC-CH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCC-HH
Confidence 888888888888888888876433 56778888888888999999999999888864 6677778888888888888 89
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCC
Q 038622 494 EAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSD 545 (587)
Q Consensus 494 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 545 (587)
+|+..++++++.. +.+..++..++.+|...|++++|...++++++..|...
T Consensus 177 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~ 227 (243)
T 2q7f_A 177 EALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHM 227 (243)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchH
Confidence 9999999988743 33688888899999999999999999999999888764
No 53
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.71 E-value=4.6e-15 Score=129.25 Aligned_cols=207 Identities=11% Similarity=0.027 Sum_probs=135.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHH
Q 038622 334 NSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIG 413 (587)
Q Consensus 334 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 413 (587)
+...+..++..+...|++++|...+++++... +.+...+..++.++...|++++|...++++...... +...+..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHH
Confidence 44555666666666666666666666666642 224556666666666677777777777666654322 4556666677
Q ss_pred HHHhc-CChHHHHHHHHHHHHcCCCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCC
Q 038622 414 GLCKA-GRVEVASKLLRSIQMKGIVL-TPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGP 491 (587)
Q Consensus 414 ~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 491 (587)
++... |++++|...++++.+.+..| +...+..++.++...|++++|+..++++++.. +.+...+..++..+...|+
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~- 162 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQ- 162 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTC-
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCC-
Confidence 77777 77777777777776621122 24566677777777777777777777777753 4556666677777777777
Q ss_pred HHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCC
Q 038622 492 IGEAVDFVIEMLERGFL-PEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSD 545 (587)
Q Consensus 492 ~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 545 (587)
+++|...++++++.. + .+...+..++.++...|+.++|..+++.+.+..|.+.
T Consensus 163 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 216 (225)
T 2vq2_A 163 LGDADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSE 216 (225)
T ss_dssp HHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCH
Confidence 777777777777643 3 3566666666777777777777777777777776653
No 54
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.71 E-value=1.1e-15 Score=135.83 Aligned_cols=207 Identities=12% Similarity=-0.016 Sum_probs=178.9
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHH
Q 038622 370 KFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQA 449 (587)
Q Consensus 370 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 449 (587)
...+..++..+...|++++|...++++...... +...+..++.++...|++++|.+.++++.+..+. +...+..++..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH
Confidence 456788888999999999999999999886433 6778899999999999999999999999987543 67889999999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHh
Q 038622 450 LFRRKRTTEAMRLFREMMEKAD-PPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEE 528 (587)
Q Consensus 450 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 528 (587)
+...|++++|+++++++++.+. +.+...+..++..+...|+ +++|...++++++.. +.+..++..++.++...|+++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~ 192 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKK-PAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYV 192 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999998322 3456677888889999999 999999999999853 337889999999999999999
Q ss_pred HHHHHHHHHHhcCCCCC-chhhhhhhHHHHHHHHHHHHhcchhhhccCchhhh
Q 038622 529 TLVELIDMVMDKAKFSD-RETSMVRGFLKIRKFQDALATFGDILDSRMPRKTF 580 (587)
Q Consensus 529 ~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 580 (587)
+|...++++++..|... .+..++.++...|++++|...++++.+..+.....
T Consensus 193 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~ 245 (252)
T 2ho1_A 193 PARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEY 245 (252)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHH
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHH
Confidence 99999999999888763 47788888999999999999999999988665443
No 55
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.71 E-value=1.9e-15 Score=126.93 Aligned_cols=170 Identities=13% Similarity=0.084 Sum_probs=117.2
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHH
Q 038622 369 DKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQ 448 (587)
Q Consensus 369 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 448 (587)
+...|..++.++...|++++|+..|+++++.++. +...+..++.++...|++++|...++++....+. +...+..++.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence 4556666777777777777777777777665433 4566667777777777777777777777665333 4566666777
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCH
Q 038622 449 ALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKE 527 (587)
Q Consensus 449 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 527 (587)
.+...++++.|...+.++.... |.+...+..++..+...|+ +++|++.++++++. .| ++.++..++.+|.+.|++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~~l~~--~p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGE-HDKAIEAYEKTISI--KPGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCC-chhHHHHHHHHHHh--cchhhhHHHHHHHHHHHCCCH
Confidence 7777777777777777777653 5566666677777777777 77777777777763 35 567777777777777777
Q ss_pred hHHHHHHHHHHhcCCCC
Q 038622 528 ETLVELIDMVMDKAKFS 544 (587)
Q Consensus 528 ~~A~~~~~~~~~~~~~~ 544 (587)
++|+..++++++.+|.+
T Consensus 158 ~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 158 DEAVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHhCCccC
Confidence 77777777777776643
No 56
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.71 E-value=5.2e-16 Score=130.38 Aligned_cols=169 Identities=10% Similarity=0.044 Sum_probs=153.7
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038622 404 DIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFR 483 (587)
Q Consensus 404 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 483 (587)
+..+|..++..|...|++++|++.|+++++.++. +..++..++.++...|++++|+..+.++.... +.+...+..++.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 5678999999999999999999999999997654 67899999999999999999999999999874 667778888888
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC-CchhhhhhhHHHHHHHH
Q 038622 484 GLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS-DRETSMVRGFLKIRKFQ 561 (587)
Q Consensus 484 ~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 561 (587)
.+...++ ++.|...+.++++. .| +..++..++.+|.+.|++++|++.++++++.+|.. ..+..++.+|.+.|+++
T Consensus 82 ~~~~~~~-~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDE-KQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCC-HHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 8899999 99999999999984 45 78999999999999999999999999999999987 45899999999999999
Q ss_pred HHHHhcchhhhccCch
Q 038622 562 DALATFGDILDSRMPR 577 (587)
Q Consensus 562 ~A~~~~~~~~~~~~~~ 577 (587)
+|+..|+++++..|+.
T Consensus 159 ~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 159 EAVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHhCCccC
Confidence 9999999999987554
No 57
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.71 E-value=1.1e-15 Score=135.10 Aligned_cols=214 Identities=15% Similarity=0.095 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 038622 301 VTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYY 380 (587)
Q Consensus 301 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 380 (587)
..+..++..+...|++++|...|+++.... +.+...+..++..+...|++++|...+++++... +.+...+..++..+
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVY 101 (243)
T ss_dssp ------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHH
Confidence 344455555556666666666666655543 3445555566666666666666666666666542 22455566666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHH
Q 038622 381 CRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAM 460 (587)
Q Consensus 381 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 460 (587)
...|++++|...++++.+.... +...+..++.++...|++++|...++++.+..+. +...+..++..+...|++++|+
T Consensus 102 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHHHH
Confidence 6666666666666666654322 4555666666777777777777777776665332 4566677777777777777777
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHH
Q 038622 461 RLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLV 522 (587)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 522 (587)
..++++++.. +.+...+..++..+...|+ +++|...++++++. .| ++.++..++.+..
T Consensus 180 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~--~p~~~~~~~~~~~l~~ 238 (243)
T 2q7f_A 180 SQFAAVTEQD-PGHADAFYNAGVTYAYKEN-REKALEMLDKAIDI--QPDHMLALHAKKLLGH 238 (243)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-TTHHHHHHHHHHHH--CTTCHHHHHHHTC---
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHccC-HHHHHHHHHHHHcc--CcchHHHHHHHHHHHh
Confidence 7777777653 5556666677777777777 77777777777763 34 5555555544433
No 58
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.71 E-value=5.4e-16 Score=148.93 Aligned_cols=272 Identities=13% Similarity=0.101 Sum_probs=167.3
Q ss_pred HHHHHHHccCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHc----C-CCCCHHHHHH
Q 038622 270 MLIDSLCSRGMLEEALKLLKEMESSGCARNV----VTYNTLIDGFCKLKRIEEAEEIFDEMEIQ----G-ISRNSVTYNT 340 (587)
Q Consensus 270 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~ 340 (587)
.++..+...|++++|+..|+++.+.. +.+. .++..++.++...|++++|...++++... + .+.....+..
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 33444444455555555554444432 1121 23444444455555555555555444322 0 0112334455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCHhhHHHHHHHHHhcCC-----------------HHHHHHHHHHHHH
Q 038622 341 LIDGLCKSRRVEDAAQLMDQMIME----GLK-PDKFTYNSLLTYYCRAGD-----------------IKRAADIVQNMTS 398 (587)
Q Consensus 341 l~~~~~~~~~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~-----------------~~~A~~~~~~~~~ 398 (587)
++..+...|++++|...+++++.. +.. ....++..++..+...|+ +++|...+++...
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 555555566666666665555442 001 112345556666666666 6777766666544
Q ss_pred C----CC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----hHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038622 399 N----GC-EPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIV-LT----PQAYNPVIQALFRRKRTTEAMRLFREMME 468 (587)
Q Consensus 399 ~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 468 (587)
. +. ......+..++..+...|++++|...++++.+.... .+ ...+..++.++...|++++|+..++++++
T Consensus 212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2 11 112346777888888888888888888887764111 01 13678889999999999999999998887
Q ss_pred cCC-CC----CHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----CCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 038622 469 KAD-PP----DALTYKHVFRGLCNGGGPIGEAVDFVIEMLERG----FLP-EFSSFYMLAEGLVSLGKEETLVELIDMVM 538 (587)
Q Consensus 469 ~~~-~~----~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~----~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 538 (587)
... .. ....+..++..+...|+ +++|..+++++++.. ..+ ...++..++.+|...|++++|...+++++
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 292 LAVELGEREVEAQSCYSLGNTYTLLHE-FNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 410 11 14567778888899999 999999999988531 011 24577889999999999999999999999
Q ss_pred hcCCC
Q 038622 539 DKAKF 543 (587)
Q Consensus 539 ~~~~~ 543 (587)
+..+.
T Consensus 371 ~~~~~ 375 (411)
T 4a1s_A 371 QLAXX 375 (411)
T ss_dssp HHCCH
T ss_pred HHHhh
Confidence 88764
No 59
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.71 E-value=8.5e-16 Score=149.13 Aligned_cols=213 Identities=9% Similarity=-0.051 Sum_probs=145.5
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 038622 351 VEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDI-KRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLR 429 (587)
Q Consensus 351 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 429 (587)
+++++..+++.... .+.+...+..++.++...|++ ++|+..|+++++..+. +...+..++.+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44555555554443 223555666666667777777 7777777776664332 45566777777777777777777777
Q ss_pred HHHHcCCCCChHhHHHHHHHHHhc---------CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhC--------CCCH
Q 038622 430 SIQMKGIVLTPQAYNPVIQALFRR---------KRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNG--------GGPI 492 (587)
Q Consensus 430 ~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~ 492 (587)
++.+. .|+...+..++.++... |++++|+..|+++++.. |.+...+..++.++... |+ +
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~-~ 237 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKI-S 237 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHH-H
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccch-H
Confidence 77764 34456667777777777 77777777777777764 55666777777777666 66 7
Q ss_pred HHHHHHHHHHHHcCCCC----CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCC-chhhhhhhHHHHHHHHHHHHhc
Q 038622 493 GEAVDFVIEMLERGFLP----EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSD-RETSMVRGFLKIRKFQDALATF 567 (587)
Q Consensus 493 ~~A~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~A~~~~ 567 (587)
++|+..|+++++. .| ++.++..++.+|...|++++|+..++++++.+|... .+..++.++...|++++|+..+
T Consensus 238 ~~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 238 QQALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7777777777774 34 577777777778778888888888888777777663 4677777777777777777776
Q ss_pred chhh
Q 038622 568 GDIL 571 (587)
Q Consensus 568 ~~~~ 571 (587)
+++.
T Consensus 316 ~~~~ 319 (474)
T 4abn_A 316 GKTK 319 (474)
T ss_dssp TTCC
T ss_pred cccc
Confidence 6653
No 60
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.71 E-value=9.6e-17 Score=154.20 Aligned_cols=277 Identities=13% Similarity=0.019 Sum_probs=217.5
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHh
Q 038622 301 VTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNS----VTYNTLIDGLCKSRRVEDAAQLMDQMIME----GL-KPDKF 371 (587)
Q Consensus 301 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~-~~~~~ 371 (587)
..+..++..+...|++++|+..|+++.... +.+. ..+..++..+...|++++|...+++++.. +. .....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 445567888999999999999999998875 3343 47888899999999999999999998763 11 12345
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCCcchHHHHHHHHHhcCC-----------------hHHHHHHHH
Q 038622 372 TYNSLLTYYCRAGDIKRAADIVQNMTSN----G-CEPDIVTYGTLIGGLCKAGR-----------------VEVASKLLR 429 (587)
Q Consensus 372 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~ 429 (587)
.+..++..+...|++++|...++++... + .......+..++..|...|+ +++|.+.++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 6788899999999999999999988763 1 11124477888999999999 999999998
Q ss_pred HHHHc----CCCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCC----HHHHHHHHHHHHhCCCCHHHHHHHH
Q 038622 430 SIQMK----GIVL-TPQAYNPVIQALFRRKRTTEAMRLFREMMEKAD-PPD----ALTYKHVFRGLCNGGGPIGEAVDFV 499 (587)
Q Consensus 430 ~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~~A~~~~ 499 (587)
+..+. +..+ ....+..++..+...|++++|+..++++++... .++ ...+..++..+...|+ +++|+..+
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~ 286 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQ-FEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTC-HHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcC-HHHHHHHH
Confidence 87653 1111 235788899999999999999999999987410 112 2367788888999999 99999999
Q ss_pred HHHHHcC--CCC---CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC-------CchhhhhhhHHHHHHHHHHHHhc
Q 038622 500 IEMLERG--FLP---EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS-------DRETSMVRGFLKIRKFQDALATF 567 (587)
Q Consensus 500 ~~~~~~~--~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~A~~~~ 567 (587)
+++++.. ... ...++..++.+|...|++++|...++++++..+.. ..+..++.+|...|++++|+..|
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 9998631 011 25678899999999999999999999998765442 14678889999999999999999
Q ss_pred chhhhccCchhh
Q 038622 568 GDILDSRMPRKT 579 (587)
Q Consensus 568 ~~~~~~~~~~~~ 579 (587)
+++++....-+.
T Consensus 367 ~~al~~~~~~~~ 378 (411)
T 4a1s_A 367 EQHLQLAXXXXX 378 (411)
T ss_dssp HHHHHHCCHHHH
T ss_pred HHHHHHHhhccc
Confidence 999887755443
No 61
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.69 E-value=7.1e-16 Score=139.12 Aligned_cols=249 Identities=13% Similarity=-0.026 Sum_probs=184.7
Q ss_pred HHHcCChhhHHHHHHhhccCCC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCH
Q 038622 30 LCKAHQIRPAILMMEEMPGYGL---APDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRI 106 (587)
Q Consensus 30 ~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 106 (587)
+...|++++|+..|+.+.+... +.++.++..++..+...|++++|+..|+++.+.+ |.+..++..++.++...|++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCH
Confidence 3456788899999988887531 2246678888888999999999999999998875 55778888889999999999
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHH
Q 038622 107 EDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQM 186 (587)
Q Consensus 107 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 186 (587)
++|+..++++++.. +.+..++..++.++...|++++|...++++.+. .|+.......+..+...|++++|...+++.
T Consensus 94 ~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 94 DAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999988863 456778888889999999999999999998875 344444444555566778999999999887
Q ss_pred HhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC---CHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 038622 187 ILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILP---DVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQP 263 (587)
Q Consensus 187 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 263 (587)
.... +++... ..++..+...++.++|...++......... +...+..++.++...|++++|...|+++.... |
T Consensus 171 ~~~~-~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p 246 (275)
T 1xnf_A 171 FEKS-DKEQWG-WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--V 246 (275)
T ss_dssp HHHS-CCCSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--C
T ss_pred HhcC-CcchHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--c
Confidence 7664 334333 346777788888888888888876542110 14677888889999999999999999988763 3
Q ss_pred CHHhHHHHHHHHHccCChHHHHHHH
Q 038622 264 DEFTYNMLIDSLCSRGMLEEALKLL 288 (587)
Q Consensus 264 ~~~~~~~l~~~~~~~~~~~~a~~~~ 288 (587)
+. +.....++...|++++|++.+
T Consensus 247 ~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 247 HN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TT--CHHHHHHHHHHHHHHHC----
T ss_pred hh--HHHHHHHHHHHHHHHhhHHHH
Confidence 22 222355666778888887766
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.69 E-value=8.9e-16 Score=147.22 Aligned_cols=296 Identities=14% Similarity=0.083 Sum_probs=182.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHhHHHHHHHHHccCChHHHHHHHHHHHHC----CC-CCCHHH
Q 038622 232 TFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPD----EFTYNMLIDSLCSRGMLEEALKLLKEMESS----GC-ARNVVT 302 (587)
Q Consensus 232 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~ 302 (587)
.+...+..+...|++++|...|+++.+.. +.+ ..++..++..+...|++++|+..++++... +. +....+
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 34444445555555555555555555442 222 234445555555555555555555554322 10 111234
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHhcCC--------------------HHHHHHH
Q 038622 303 YNTLIDGFCKLKRIEEAEEIFDEMEIQGI-----SRNSVTYNTLIDGLCKSRR--------------------VEDAAQL 357 (587)
Q Consensus 303 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~--------------------~~~A~~~ 357 (587)
+..++.++...|++++|...++++..... +....++..++..+...|+ +++|...
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 169 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF 169 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 45555556666666666666655443210 0012355566666666677 7777777
Q ss_pred HHHHHHc----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----cchHHHHHHHHHhcCChHHHHHH
Q 038622 358 MDQMIME----GLKP-DKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCE-PD----IVTYGTLIGGLCKAGRVEVASKL 427 (587)
Q Consensus 358 ~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~ 427 (587)
+++++.. +..| ...++..++..+...|++++|...++++.+.... ++ ...+..++.++...|++++|...
T Consensus 170 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 249 (406)
T 3sf4_A 170 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 249 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 7766542 1111 1235677778888888888888888887653111 11 23677888889999999999999
Q ss_pred HHHHHHcCCC-CC----hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCC----HHHHHHHHHHHHhCCCCHHHHHH
Q 038622 428 LRSIQMKGIV-LT----PQAYNPVIQALFRRKRTTEAMRLFREMMEKAD-PPD----ALTYKHVFRGLCNGGGPIGEAVD 497 (587)
Q Consensus 428 ~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~~A~~ 497 (587)
++++...... .+ ..++..++..+...|++++|...++++++... .++ ...+..++..+...|+ +++|..
T Consensus 250 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~ 328 (406)
T 3sf4_A 250 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGN-HDQAMH 328 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHH
T ss_pred HHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC-HHHHHH
Confidence 9888754111 01 35678889999999999999999999887410 112 4567778888899999 999999
Q ss_pred HHHHHHHc----CCCC-CHHHHHHHHHHHHccCCHhH
Q 038622 498 FVIEMLER----GFLP-EFSSFYMLAEGLVSLGKEET 529 (587)
Q Consensus 498 ~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~ 529 (587)
.++++++. +..+ ...++..++.++...|+...
T Consensus 329 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 329 FAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 99998853 1112 35677788899988887643
No 63
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.69 E-value=4e-16 Score=145.45 Aligned_cols=96 Identities=14% Similarity=0.155 Sum_probs=53.3
Q ss_pred hHHHHHHHHHccCChHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHc----C-CCCCHHH
Q 038622 267 TYNMLIDSLCSRGMLEEALKLLKEMESSGCARN----VVTYNTLIDGFCKLKRIEEAEEIFDEMEIQ----G-ISRNSVT 337 (587)
Q Consensus 267 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~ 337 (587)
.+...+..+...|++++|+..++++.+.. +.+ ...+..++..+...|++++|...++++... + .+.....
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 34445566666666677766666666553 222 234555666666666666666666655332 1 0112334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038622 338 YNTLIDGLCKSRRVEDAAQLMDQMIM 363 (587)
Q Consensus 338 ~~~l~~~~~~~~~~~~A~~~~~~~~~ 363 (587)
+..++..+...|++++|...+++++.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~ 111 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLD 111 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 55555556666666666666665544
No 64
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.69 E-value=3.3e-14 Score=123.81 Aligned_cols=199 Identities=10% Similarity=0.048 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 038622 301 VTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYY 380 (587)
Q Consensus 301 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 380 (587)
..+..++..+...|++++|...++++.... +.+...+..++..+...|++++|...++++.... +.+...+..++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 344444555555555555555555544433 3334445555555555555555555555555432 22344455555555
Q ss_pred Hhc-CCHHHHHHHHHHHHHCCCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHH
Q 038622 381 CRA-GDIKRAADIVQNMTSNGCEP-DIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTE 458 (587)
Q Consensus 381 ~~~-~~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 458 (587)
... |++++|...++++.+.+..| +...+..++.++...|++++|...++++.+..+. +...+..++.++...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCHHH
Confidence 555 55555555555555421111 1344555555556666666666666655554322 34555566666666666666
Q ss_pred HHHHHHHHHhcCCC-CCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 038622 459 AMRLFREMMEKADP-PDALTYKHVFRGLCNGGGPIGEAVDFVIEMLE 504 (587)
Q Consensus 459 A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 504 (587)
|...++++++.. + .+...+..+...+...|+ .++|..+++.+.+
T Consensus 166 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 166 ADYYFKKYQSRV-EVLQADDLLLGWKIAKALGN-AQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHHH
Confidence 666666665543 3 444444444444455555 6666666666554
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.68 E-value=1.4e-15 Score=141.71 Aligned_cols=279 Identities=13% Similarity=0.086 Sum_probs=155.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----HHhHHHHHHHHHccCChHHHHHHHHHHHHC----C-CCCCHHH
Q 038622 232 TFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPD----EFTYNMLIDSLCSRGMLEEALKLLKEMESS----G-CARNVVT 302 (587)
Q Consensus 232 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~ 302 (587)
.+......+...|++++|...|+++.+.. +.+ ...+..++..+...|++++|+..++++... + .+....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 34455667777788888888888877763 233 356667777778888888888887776543 1 1122445
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCC--------------------HHHHHHH
Q 038622 303 YNTLIDGFCKLKRIEEAEEIFDEMEIQGIS-RN----SVTYNTLIDGLCKSRR--------------------VEDAAQL 357 (587)
Q Consensus 303 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~~A~~~ 357 (587)
+..++..+...|++++|...+++....... ++ ..++..++..+...|+ +++|...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 667777777888888888887776543100 11 1244445555555555 3444433
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 038622 358 MDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIV 437 (587)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 437 (587)
+++++.. ..... ........+..++..+...|++++|...++++.+....
T Consensus 166 ~~~a~~~----------------------------~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 215 (338)
T 3ro2_A 166 YEENLSL----------------------------VTALG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 215 (338)
T ss_dssp HHHHHHH----------------------------HHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH----------------------------HHhcC--CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 3333221 00000 00001223445555555556666666665555432100
Q ss_pred -CC----hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCC----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-
Q 038622 438 -LT----PQAYNPVIQALFRRKRTTEAMRLFREMMEKAD-PPD----ALTYKHVFRGLCNGGGPIGEAVDFVIEMLERG- 506 (587)
Q Consensus 438 -~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~- 506 (587)
++ ...+..++..+...|++++|...++++++... .++ ...+..++..+...|+ +++|...++++++..
T Consensus 216 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 216 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD-YEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHH
Confidence 01 12556666666777777777777766665310 111 3345556666667777 777777777766421
Q ss_pred ---CCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCC
Q 038622 507 ---FLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAK 542 (587)
Q Consensus 507 ---~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 542 (587)
-.+ ...++..++.+|...|++++|...++++++..+
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 001 134556677777777777777777777776554
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.67 E-value=8.4e-14 Score=127.31 Aligned_cols=222 Identities=9% Similarity=0.059 Sum_probs=171.5
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-------hcCCH-------HHHHHHHHHHHHcCCCC-CHhhHHHHHHHHH
Q 038622 317 EEAEEIFDEMEIQGISRNSVTYNTLIDGLC-------KSRRV-------EDAAQLMDQMIMEGLKP-DKFTYNSLLTYYC 381 (587)
Q Consensus 317 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 381 (587)
++|..+|+++.... |.++..|..++..+. ..|++ ++|..+|++++.. +.| +...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHH
Confidence 56777777777654 567777777776665 34775 8899999998873 233 4557888888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC-cc-hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHH-hcCCHHH
Q 038622 382 RAGDIKRAADIVQNMTSNGCEPD-IV-TYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALF-RRKRTTE 458 (587)
Q Consensus 382 ~~~~~~~A~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~ 458 (587)
..|++++|..+|+++++. .|+ .. .|..++..+.+.|++++|..+|+++.+..+. +...|...+.... ..|++++
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCCHHH
Confidence 889999999999998874 343 33 7888888888899999999999999886432 4455554444432 3699999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHccCCHhHHHHHHH
Q 038622 459 AMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERG-FLP--EFSSFYMLAEGLVSLGKEETLVELID 535 (587)
Q Consensus 459 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~-~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~ 535 (587)
|..+|+++++.. |.+...|..++..+...|+ +++|+.+|+++++.. ++| ....|..++..+.+.|+.++|..+++
T Consensus 188 A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~-~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 188 AFKIFELGLKKY-GDIPEYVLAYIDYLSHLNE-DNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999998863 6677888888888888888 999999999999852 355 46788888899999999999999999
Q ss_pred HHHhcCCCCC
Q 038622 536 MVMDKAKFSD 545 (587)
Q Consensus 536 ~~~~~~~~~~ 545 (587)
++++..|++.
T Consensus 266 ~a~~~~p~~~ 275 (308)
T 2ond_A 266 RRFTAFREEY 275 (308)
T ss_dssp HHHHHTTTTT
T ss_pred HHHHHccccc
Confidence 9999988753
No 67
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.67 E-value=2.7e-14 Score=130.54 Aligned_cols=220 Identities=12% Similarity=0.038 Sum_probs=179.5
Q ss_pred HHHHHHHHHHHHcCCCCCHhhHHHHHHHHH-------hcCCH-------HHHHHHHHHHHHC-CCCCCcchHHHHHHHHH
Q 038622 352 EDAAQLMDQMIMEGLKPDKFTYNSLLTYYC-------RAGDI-------KRAADIVQNMTSN-GCEPDIVTYGTLIGGLC 416 (587)
Q Consensus 352 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~ 416 (587)
++|...|++++... +.+...|..++..+. ..|++ ++|..+|+++++. .+. +...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~-~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK-NMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence 68889999999853 346778888877765 35886 8999999999983 332 5568899999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCChH-hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-hCCCCHHH
Q 038622 417 KAGRVEVASKLLRSIQMKGIVLTPQ-AYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLC-NGGGPIGE 494 (587)
Q Consensus 417 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~ 494 (587)
..|++++|.++|+++++..+. +.. +|..++..+.+.|++++|..+|+++++.+ |++...+...+.... ..|+ +++
T Consensus 111 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~-~~~ 187 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKD-KSV 187 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCC-HHH
T ss_pred hcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCC-HHH
Confidence 999999999999999985332 344 89999999999999999999999999874 555555554443322 2688 999
Q ss_pred HHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhc---CCC-C-CchhhhhhhHHHHHHHHHHHHhcc
Q 038622 495 AVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDK---AKF-S-DRETSMVRGFLKIRKFQDALATFG 568 (587)
Q Consensus 495 A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~-~-~~~~~~~~~~~~~~~~~~A~~~~~ 568 (587)
|..+|+++++. .| ++.++..++..+.+.|++++|+.+|+++++. +|. . ..|..++..+.+.|+.++|...++
T Consensus 188 A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 188 AFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp HHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999984 45 7899999999999999999999999999996 332 2 357888888999999999999999
Q ss_pred hhhhccCchh
Q 038622 569 DILDSRMPRK 578 (587)
Q Consensus 569 ~~~~~~~~~~ 578 (587)
++++..|...
T Consensus 266 ~a~~~~p~~~ 275 (308)
T 2ond_A 266 RRFTAFREEY 275 (308)
T ss_dssp HHHHHTTTTT
T ss_pred HHHHHccccc
Confidence 9999887543
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.66 E-value=3.9e-15 Score=141.19 Aligned_cols=232 Identities=12% Similarity=0.030 Sum_probs=109.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC-CCCC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-----CcchHHH
Q 038622 342 IDGLCKSRRVEDAAQLMDQMIMEG-LKPD----KFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCE-P-----DIVTYGT 410 (587)
Q Consensus 342 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~-----~~~~~~~ 410 (587)
+..+...|++++|...++++.... ..++ ..++..++.++...|+++.|...++++.+.... + ...++..
T Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 334445555555555555554320 0011 224445555555555555555555554432000 0 1224455
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCC-CC----hHhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CC-CCCHHHHHH
Q 038622 411 LIGGLCKAGRVEVASKLLRSIQMKGIV-LT----PQAYNPVIQALFRRKRTTEAMRLFREMMEK----AD-PPDALTYKH 480 (587)
Q Consensus 411 l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~ 480 (587)
++.+|...|++++|...++++.+.... ++ ..++..++.++...|++++|+..++++++. +. +....++..
T Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 269 (383)
T 3ulq_A 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL 269 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 555555556666665555555442100 01 124555566666666666666666655551 11 222344555
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCC---CC-CHHHHHHHHHHHHccCC---HhHHHHHHHHHHhcCCCCCchhhhhhh
Q 038622 481 VFRGLCNGGGPIGEAVDFVIEMLERGF---LP-EFSSFYMLAEGLVSLGK---EETLVELIDMVMDKAKFSDRETSMVRG 553 (587)
Q Consensus 481 l~~~~~~~~~~~~~A~~~~~~~~~~~~---~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~ 553 (587)
++..+...|+ +++|...++++++..- .| ....+..++.++...|+ +++|+..+++........+....++.+
T Consensus 270 l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 270 ITQIHYKLGK-IDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 5555555565 6666666665553200 11 11223445555556665 455555554431111111234455555
Q ss_pred HHHHHHHHHHHHhcchhhhcc
Q 038622 554 FLKIRKFQDALATFGDILDSR 574 (587)
Q Consensus 554 ~~~~~~~~~A~~~~~~~~~~~ 574 (587)
|...|++++|...|+++++..
T Consensus 349 y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHH
Confidence 666666666666666555543
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.65 E-value=4.5e-14 Score=133.84 Aligned_cols=235 Identities=11% Similarity=-0.062 Sum_probs=168.3
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CC-----CHhhHH
Q 038622 306 LIDGFCKLKRIEEAEEIFDEMEIQ----GISR-NSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGL-KP-----DKFTYN 374 (587)
Q Consensus 306 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~-----~~~~~~ 374 (587)
.+..+...|++++|...++++... +.++ ...++..++..+...|+++.|...+.+++.... .+ ...++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 566777788888888888887653 1111 345677788888888888888888888876311 11 134677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----cchHHHHHHHHHhcCChHHHHHHHHHHHHc----CC-CCChHhHH
Q 038622 375 SLLTYYCRAGDIKRAADIVQNMTSNGCE-PD----IVTYGTLIGGLCKAGRVEVASKLLRSIQMK----GI-VLTPQAYN 444 (587)
Q Consensus 375 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~ 444 (587)
.++.++...|++++|...++++++.... ++ ..++..++.+|...|++++|...++++.+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8888899999999999999888763111 11 237888999999999999999999998873 22 22356788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc----CCCCCHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCCC-CHHHHHHH
Q 038622 445 PVIQALFRRKRTTEAMRLFREMMEK----ADPPDALTYKHVFRGLCNGGGP--IGEAVDFVIEMLERGFLP-EFSSFYML 517 (587)
Q Consensus 445 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~--~~~A~~~~~~~~~~~~~p-~~~~~~~l 517 (587)
.++.++...|++++|...++++++. +.+.....+..+...+...|+. +++|+.++++. +..| ...++..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 9999999999999999999999874 1111122345566666666651 44455555544 2233 45677889
Q ss_pred HHHHHccCCHhHHHHHHHHHHhcCCC
Q 038622 518 AEGLVSLGKEETLVELIDMVMDKAKF 543 (587)
Q Consensus 518 ~~~~~~~g~~~~A~~~~~~~~~~~~~ 543 (587)
+.+|...|++++|...++++++....
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999876543
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.65 E-value=7.6e-15 Score=142.44 Aligned_cols=212 Identities=12% Similarity=0.027 Sum_probs=166.2
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHH
Q 038622 316 IEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRV-EDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQ 394 (587)
Q Consensus 316 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 394 (587)
+++++..++...... +.+...+..++..+...|++ ++|+..|+++++.. +.+...+..++.++...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455666666554432 45667777777788888888 88888888887753 2246677788888888888888888888
Q ss_pred HHHHCCCCCCcchHHHHHHHHHhc---------CChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc--------CCHH
Q 038622 395 NMTSNGCEPDIVTYGTLIGGLCKA---------GRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRR--------KRTT 457 (587)
Q Consensus 395 ~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~ 457 (587)
++++. .|+...+..++.++... |++++|...++++.+..+. +...|..++.++... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHH
Confidence 88775 35567777788888888 8889999999888886543 567888888888888 8899
Q ss_pred HHHHHHHHHHhcCCC---CCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHH
Q 038622 458 EAMRLFREMMEKADP---PDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVEL 533 (587)
Q Consensus 458 ~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~ 533 (587)
+|+..|+++++.+ | .+...+..++.++...|+ +++|++.++++++. .| +..++..++.++...|++++|+..
T Consensus 239 ~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~l--~p~~~~a~~~l~~~~~~lg~~~eAi~~ 314 (474)
T 4abn_A 239 QALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEES-YGEALEGFSQAAAL--DPAWPEPQQREQQLLEFLSRLTSLLES 314 (474)
T ss_dssp HHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999864 4 578888889989999998 99999999999984 46 688888999999999999998876
Q ss_pred HHH
Q 038622 534 IDM 536 (587)
Q Consensus 534 ~~~ 536 (587)
+.+
T Consensus 315 ~~~ 317 (474)
T 4abn_A 315 KGK 317 (474)
T ss_dssp TTT
T ss_pred hcc
Confidence 544
No 71
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.60 E-value=4.5e-14 Score=123.08 Aligned_cols=201 Identities=14% Similarity=0.051 Sum_probs=154.6
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHH
Q 038622 368 PDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVI 447 (587)
Q Consensus 368 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 447 (587)
.|+..+...+..+...|++++|+..|+++++....++...+..++.++...|++++|+..++++.+..+. +...+..++
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 3567788888889999999999999999888654356777777889999999999999999999886433 557888899
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCH-------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC---HHHHHHH
Q 038622 448 QALFRRKRTTEAMRLFREMMEKADPPDA-------LTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPE---FSSFYML 517 (587)
Q Consensus 448 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~---~~~~~~l 517 (587)
.++...|++++|+..++++++.. |.+. ..+..++..+...|+ +++|++.++++++. .|+ ..++..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~-~~~A~~~~~~al~~--~p~~~~~~~~~~l 159 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGN-IEKAEENYKHATDV--TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHTTS--SCHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhcc-HHHHHHHHHHHHhc--CCCcccHHHHHHH
Confidence 99999999999999999999864 5555 457777888888888 99999999999874 454 5778888
Q ss_pred HHHHHccCCHhHHHHHHHHHHhcCCCCCchhhhhhhHHHHHHHHHHHHhcchhhhccCchhh
Q 038622 518 AEGLVSLGKEETLVELIDMVMDKAKFSDRETSMVRGFLKIRKFQDALATFGDILDSRMPRKT 579 (587)
Q Consensus 518 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 579 (587)
+.+|...| ...++++....+... ...........+.+++|+..|+++++..|....
T Consensus 160 ~~~~~~~~-----~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~ 215 (228)
T 4i17_A 160 GVLFYNNG-----ADVLRKATPLASSNK-EKYASEKAKADAAFKKAVDYLGEAVTLSPNRTE 215 (228)
T ss_dssp HHHHHHHH-----HHHHHHHGGGTTTCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHH-----HHHHHHHHhcccCCH-HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHH
Confidence 88886554 344566666554432 122233355678889999999999998866544
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.60 E-value=5.5e-15 Score=135.96 Aligned_cols=239 Identities=16% Similarity=0.120 Sum_probs=126.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC
Q 038622 302 TYNTLIDGFCKLKRIEEAEEIFDEMEIQ-------GISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIME------GLKP 368 (587)
Q Consensus 302 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~ 368 (587)
++..++..+...|++++|..+++++... ..+.....+..++..+...|++++|...+++++.. +..|
T Consensus 29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 108 (311)
T 3nf1_A 29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP 108 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 3444444444445555555444444331 11222334444555555555555555555555432 1111
Q ss_pred -CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHHc------
Q 038622 369 -DKFTYNSLLTYYCRAGDIKRAADIVQNMTSN------GCEP-DIVTYGTLIGGLCKAGRVEVASKLLRSIQMK------ 434 (587)
Q Consensus 369 -~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------ 434 (587)
....+..++..+...|++++|...++++.+. +..| ....+..++..+...|++++|..+++++...
T Consensus 109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 188 (311)
T 3nf1_A 109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG 188 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Confidence 2334555556666666666666666655542 1111 2345666677777777777777777776653
Q ss_pred CCCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCCHHH-------HHHHHHHHHhCCCCHHHHHHHH
Q 038622 435 GIVL-TPQAYNPVIQALFRRKRTTEAMRLFREMMEK-------ADPPDALT-------YKHVFRGLCNGGGPIGEAVDFV 499 (587)
Q Consensus 435 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~-------~~~l~~~~~~~~~~~~~A~~~~ 499 (587)
+..| ....+..++.++...|++++|...++++++. ...+.... +......+...+. +.+|...+
T Consensus 189 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~ 267 (311)
T 3nf1_A 189 PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTS-FGEYGGWY 267 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CC-SCCCC---
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHH-HHHHHHHH
Confidence 1111 2346677778888888888888888887752 11111111 1122222333444 66667777
Q ss_pred HHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCC
Q 038622 500 IEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKF 543 (587)
Q Consensus 500 ~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 543 (587)
+++... .| ...++..++.+|.+.|++++|...++++++..|.
T Consensus 268 ~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 268 KACKVD--SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred hhcCCC--CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 777652 34 5778888999999999999999999998887653
No 73
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.59 E-value=1.8e-14 Score=145.03 Aligned_cols=170 Identities=15% Similarity=0.088 Sum_probs=149.6
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHH
Q 038622 369 DKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQ 448 (587)
Q Consensus 369 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 448 (587)
+...++.++.++...|++++|+..|+++++..+. +...+..++.+|.+.|++++|++.|+++++.++. +..+|..++.
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 4568899999999999999999999999986443 5778899999999999999999999999986544 5789999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCH
Q 038622 449 ALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKE 527 (587)
Q Consensus 449 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 527 (587)
++...|++++|++.|+++++.+ |.+...+..++.++...|+ +++|++.|+++++ +.| +..++..++.+|...|++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~-~~eAi~~~~~Al~--l~P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGN-IPEAIASYRTALK--LKPDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH--hCCCChHHHhhhhhHHHhcccH
Confidence 9999999999999999999975 6678889999999999999 9999999999998 457 688999999999999999
Q ss_pred hHHHHHHHHHHhcCCCC
Q 038622 528 ETLVELIDMVMDKAKFS 544 (587)
Q Consensus 528 ~~A~~~~~~~~~~~~~~ 544 (587)
++|.+.++++++..++.
T Consensus 162 ~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 162 TDYDERMKKLVSIVADQ 178 (723)
T ss_dssp TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChhH
Confidence 99999999998877653
No 74
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.58 E-value=1.8e-13 Score=119.31 Aligned_cols=203 Identities=7% Similarity=-0.082 Sum_probs=162.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHH
Q 038622 332 SRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTL 411 (587)
Q Consensus 332 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 411 (587)
+.++..+...+..+...|++++|+..|++++.....++...+..++.++...|++++|+..++++++.++. +...+..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHH
Confidence 35678889999999999999999999999999754367788888999999999999999999999986443 56788999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCCh-------HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CHHHHHHHH
Q 038622 412 IGGLCKAGRVEVASKLLRSIQMKGIVLTP-------QAYNPVIQALFRRKRTTEAMRLFREMMEKADPP--DALTYKHVF 482 (587)
Q Consensus 412 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~ 482 (587)
+.++...|++++|...++++.+..+. +. ..|..++..+...|++++|+..|+++++.+ |. +...+..++
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~ 160 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLG 160 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHH
Confidence 99999999999999999999986443 44 458889999999999999999999999863 44 456677777
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCc
Q 038622 483 RGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDR 546 (587)
Q Consensus 483 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 546 (587)
.++.. .+...++++...+ ..+...+... .....|.+++|+..++++++..|.+..
T Consensus 161 ~~~~~------~~~~~~~~a~~~~-~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p~~~~ 215 (228)
T 4i17_A 161 VLFYN------NGADVLRKATPLA-SSNKEKYASE--KAKADAAFKKAVDYLGEAVTLSPNRTE 215 (228)
T ss_dssp HHHHH------HHHHHHHHHGGGT-TTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHH------HHHHHHHHHHhcc-cCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCCCHH
Confidence 77644 4445566666542 2344444333 344567799999999999999998743
No 75
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.58 E-value=7.9e-14 Score=140.47 Aligned_cols=168 Identities=11% Similarity=0.020 Sum_probs=147.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHH
Q 038622 332 SRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTL 411 (587)
Q Consensus 332 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l 411 (587)
|.+...++.++.++.+.|++++|+..|+++++.. +-+...+..++.++.+.|++++|+..|+++++.++. +...+..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 4567889999999999999999999999999863 235678899999999999999999999999986443 57789999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCC
Q 038622 412 IGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGP 491 (587)
Q Consensus 412 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 491 (587)
+.++...|++++|++.|+++++.++. +..+++.++.++...|++++|+..|+++++.. |.+...+..++.++...|+
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~- 160 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCD- 160 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhccc-
Confidence 99999999999999999999986544 57899999999999999999999999999975 6678888899999999999
Q ss_pred HHHHHHHHHHHHH
Q 038622 492 IGEAVDFVIEMLE 504 (587)
Q Consensus 492 ~~~A~~~~~~~~~ 504 (587)
+++|.+.++++++
T Consensus 161 ~~~A~~~~~kal~ 173 (723)
T 4gyw_A 161 WTDYDERMKKLVS 173 (723)
T ss_dssp CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999886
No 76
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.57 E-value=2.6e-13 Score=113.98 Aligned_cols=173 Identities=16% Similarity=0.065 Sum_probs=139.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHH
Q 038622 371 FTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQAL 450 (587)
Q Consensus 371 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 450 (587)
..+..++..+...|++++|...++++...... +...+..++..+...|++++|...++++.+..+. +...+..++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAF-DVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence 35566677778888888888888877765332 5667778888888888888888888888876433 567888888889
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHH
Q 038622 451 FRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETL 530 (587)
Q Consensus 451 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 530 (587)
...|++++|...++++.+.. +.+...+..++..+...|+ +++|...++++++.. +.++.++..++.++...|++++|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGR-FDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCc-HHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999988874 6677788888888888898 999999999998753 33788888999999999999999
Q ss_pred HHHHHHHHhcCCCCCchh
Q 038622 531 VELIDMVMDKAKFSDRET 548 (587)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~ 548 (587)
...++++++..|.+....
T Consensus 164 ~~~~~~~~~~~~~~~~~~ 181 (186)
T 3as5_A 164 LPHFKKANELDEGASVEL 181 (186)
T ss_dssp HHHHHHHHHHHHCCCGGG
T ss_pred HHHHHHHHHcCCCchhhH
Confidence 999999998888765433
No 77
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.56 E-value=1.4e-14 Score=133.24 Aligned_cols=243 Identities=16% Similarity=0.052 Sum_probs=175.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----
Q 038622 332 SRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIME-------GLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSN----- 399 (587)
Q Consensus 332 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----- 399 (587)
|.....+..++..+...|++++|..++++++.. ........+..++.++...|++++|...+++++..
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 334567888899999999999999999999873 12223457888899999999999999999988764
Q ss_pred -CCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhc-
Q 038622 400 -GCEP-DIVTYGTLIGGLCKAGRVEVASKLLRSIQMK------GIVL-TPQAYNPVIQALFRRKRTTEAMRLFREMMEK- 469 (587)
Q Consensus 400 -~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 469 (587)
+..| ....+..++..+...|++++|..+++++.+. +..| ....+..++..+...|++++|+.+++++++.
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 1112 3557888999999999999999999998874 1112 2357888999999999999999999999874
Q ss_pred -----CCCC-CHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-------CCCCC-------HHHHHHHHHHHHccCCHhH
Q 038622 470 -----ADPP-DALTYKHVFRGLCNGGGPIGEAVDFVIEMLER-------GFLPE-------FSSFYMLAEGLVSLGKEET 529 (587)
Q Consensus 470 -----~~~~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~-------~~~p~-------~~~~~~l~~~~~~~g~~~~ 529 (587)
+..| ....+..++..+...|+ +++|...++++++. ...+. ...+..++..+...+.+.+
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGK-FKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGE 262 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCC
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 1122 34467788888999999 99999999999863 11221 2233444555667778888
Q ss_pred HHHHHHHHHhcCCCC-CchhhhhhhHHHHHHHHHHHHhcchhhhccC
Q 038622 530 LVELIDMVMDKAKFS-DRETSMVRGFLKIRKFQDALATFGDILDSRM 575 (587)
Q Consensus 530 A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 575 (587)
|...++++....|.. ..+..++.+|.+.|++++|+..|+++++..+
T Consensus 263 a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 263 YGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp CC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 888898888776654 4578899999999999999999999987654
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.55 E-value=3.2e-12 Score=120.72 Aligned_cols=167 Identities=10% Similarity=0.028 Sum_probs=72.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCC--C--CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hHhHH----
Q 038622 374 NSLLTYYCRAGDIKRAADIVQNMTSNGCE--P--DIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLT-PQAYN---- 444 (587)
Q Consensus 374 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~---- 444 (587)
..++..+...|++++|...+++....... + ....+..++..+...|++++|...+++.......++ ...+.
T Consensus 139 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~ 218 (373)
T 1hz4_A 139 RIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNAN 218 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHH
Confidence 33444455555555555555554432111 0 112344445555555555555555555443211111 01111
Q ss_pred -HHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCCCC-HHHHH
Q 038622 445 -PVIQALFRRKRTTEAMRLFREMMEKADPPD---ALTYKHVFRGLCNGGGPIGEAVDFVIEMLER----GFLPE-FSSFY 515 (587)
Q Consensus 445 -~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~----~~~p~-~~~~~ 515 (587)
..+..+...|++++|...++++......+. ...+..++..+...|+ +++|...++++++. +..++ ..++.
T Consensus 219 ~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~l~~a~~~~~~~~~~~~~~~~~~ 297 (373)
T 1hz4_A 219 KVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGE-FEPAEIVLEELNENARSLRLMSDLNRNLL 297 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHhCcchhhHHHHHH
Confidence 122234455555555555555544221110 1123344445555555 55555555555431 10001 12444
Q ss_pred HHHHHHHccCCHhHHHHHHHHHHhcC
Q 038622 516 MLAEGLVSLGKEETLVELIDMVMDKA 541 (587)
Q Consensus 516 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 541 (587)
.++.++...|++++|...+++++...
T Consensus 298 ~la~~~~~~g~~~~A~~~l~~al~~~ 323 (373)
T 1hz4_A 298 LLNQLYWQAGRKSDAQRVLLDALKLA 323 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 45555555566666666555555443
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.55 E-value=2e-12 Score=122.18 Aligned_cols=232 Identities=9% Similarity=-0.024 Sum_probs=125.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCC--C---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CC-----CHhhH
Q 038622 305 TLIDGFCKLKRIEEAEEIFDEMEIQGI--S---RNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGL-KP-----DKFTY 373 (587)
Q Consensus 305 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~-----~~~~~ 373 (587)
..+..+...|++++|+..++++..... + ....++..++.+|...|+++.|...+++++.... .+ ...++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 344455566666777666666654310 0 1234555666666667777777777666654210 01 12345
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCcchHHHHHHHHHhcCChHHHHHHHHHHHH-----cCCCCChHhH
Q 038622 374 NSLLTYYCRAGDIKRAADIVQNMTSN----GCE-PDIVTYGTLIGGLCKAGRVEVASKLLRSIQM-----KGIVLTPQAY 443 (587)
Q Consensus 374 ~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 443 (587)
..++.++...|++++|...++++++. +.. ....++..++.+|...|++++|...++++.. ..+. ...++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHH
Confidence 56666677777777777776666542 100 0123456666677777777777777776665 3222 24566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCC---CCCHH-HHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCCC-CHHHHHH
Q 038622 444 NPVIQALFRRKRTTEAMRLFREMMEKAD---PPDAL-TYKHVFRGLCNGGG--PIGEAVDFVIEMLERGFLP-EFSSFYM 516 (587)
Q Consensus 444 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~-~~~~l~~~~~~~~~--~~~~A~~~~~~~~~~~~~p-~~~~~~~ 516 (587)
..++.++...|++++|...++++++... .+... .+..+...+...++ .+.+|+.++++ .+..| ....+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~ 341 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARS 341 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHH
Confidence 6677777777777777777777766311 12222 22222222222222 03344444443 11122 2345556
Q ss_pred HHHHHHccCCHhHHHHHHHHHHhc
Q 038622 517 LAEGLVSLGKEETLVELIDMVMDK 540 (587)
Q Consensus 517 l~~~~~~~g~~~~A~~~~~~~~~~ 540 (587)
++.+|...|++++|...++++++.
T Consensus 342 la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 342 AAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH
Confidence 777777777777777777766543
No 80
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.53 E-value=1.6e-12 Score=122.76 Aligned_cols=233 Identities=10% Similarity=-0.020 Sum_probs=153.9
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHHCCC--C---CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC--C----CCHH
Q 038622 268 YNMLIDSLCSRGMLEEALKLLKEMESSGC--A---RNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGI--S----RNSV 336 (587)
Q Consensus 268 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~----~~~~ 336 (587)
+...+..+...|++++|+..++++..... + ....++..++.++...|+++.|...+.+...... + ....
T Consensus 104 ~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 183 (378)
T 3q15_A 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ 183 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHH
Confidence 34455666777888888888877765310 1 1234566777778888888888888777654310 1 1234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCcc
Q 038622 337 TYNTLIDGLCKSRRVEDAAQLMDQMIME----GLKP-DKFTYNSLLTYYCRAGDIKRAADIVQNMTS-----NGCEPDIV 406 (587)
Q Consensus 337 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~ 406 (587)
++..++.+|...|++++|...+++++.. +..+ ...++..++.++...|++++|...+++++. ..+. ...
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~ 262 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPK 262 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHH
Confidence 5667777888888888888888877752 1111 123566778888888888888888888776 3222 356
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---CC-hHhHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCHHHHH
Q 038622 407 TYGTLIGGLCKAGRVEVASKLLRSIQMKGIV---LT-PQAYNPVIQALFRRKR---TTEAMRLFREMMEKADPPDALTYK 479 (587)
Q Consensus 407 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~ 479 (587)
++..++.++...|++++|...++++.+.... +. ...+..+...+...++ +.+|+..+++... .+.....+.
T Consensus 263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~--~~~~~~~~~ 340 (378)
T 3q15_A 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL--HAYIEACAR 340 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCC--hhHHHHHHH
Confidence 6777888888888888888888888765211 11 2344556666667777 7777777766321 122234556
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHH
Q 038622 480 HVFRGLCNGGGPIGEAVDFVIEMLE 504 (587)
Q Consensus 480 ~l~~~~~~~~~~~~~A~~~~~~~~~ 504 (587)
.++..+...|+ +++|..+++++++
T Consensus 341 ~la~~y~~~g~-~~~A~~~~~~al~ 364 (378)
T 3q15_A 341 SAAAVFESSCH-FEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHTTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHCCC-HHHHHHHHHHHHH
Confidence 67777888888 8888888888875
No 81
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.53 E-value=2e-12 Score=122.17 Aligned_cols=271 Identities=13% Similarity=-0.025 Sum_probs=188.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCH----hhHHH
Q 038622 305 TLIDGFCKLKRIEEAEEIFDEMEIQGISRNSV----TYNTLIDGLCKSRRVEDAAQLMDQMIMEGL-KPDK----FTYNS 375 (587)
Q Consensus 305 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~----~~~~~ 375 (587)
..+..+...|++++|...+++........+.. .+..+...+...|++++|...++++..... .++. .++..
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 98 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ 98 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 34445556677777777777766543222221 345556667778888888888887765211 1121 23566
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCC--C-CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC----ChHhHH
Q 038622 376 LLTYYCRAGDIKRAADIVQNMTSN----GCE--P-DIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVL----TPQAYN 444 (587)
Q Consensus 376 l~~~~~~~~~~~~A~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~ 444 (587)
++..+...|++++|...+++.... +.. | ....+..++..+...|++++|...+++........ ....+.
T Consensus 99 la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 178 (373)
T 1hz4_A 99 QSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178 (373)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHH
Confidence 777888999999999999887653 111 2 23456678889999999999999999988753221 124677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCHHHHH-----HHHHHHHhCCCCHHHHHHHHHHHHHcCCCC---CHHHHH
Q 038622 445 PVIQALFRRKRTTEAMRLFREMMEKADP-PDALTYK-----HVFRGLCNGGGPIGEAVDFVIEMLERGFLP---EFSSFY 515 (587)
Q Consensus 445 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~-----~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p---~~~~~~ 515 (587)
.++..+...|++++|...++++...... .....+. ..+..+...|+ +++|...++++++....+ ....+.
T Consensus 179 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 179 MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGD-KAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCC-HHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 8899999999999999999999864111 1111121 22344678899 999999999987632111 133567
Q ss_pred HHHHHHHccCCHhHHHHHHHHHHhcCCCC-------CchhhhhhhHHHHHHHHHHHHhcchhhhccCc
Q 038622 516 MLAEGLVSLGKEETLVELIDMVMDKAKFS-------DRETSMVRGFLKIRKFQDALATFGDILDSRMP 576 (587)
Q Consensus 516 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 576 (587)
.++.++...|++++|...++++....+.. .....++.++...|++++|...+++++...+.
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 88999999999999999999987664432 13456677888999999999999998876543
No 82
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.51 E-value=3.4e-13 Score=113.29 Aligned_cols=169 Identities=15% Similarity=0.130 Sum_probs=148.9
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 038622 405 IVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRG 484 (587)
Q Consensus 405 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 484 (587)
...+..++..+...|++++|...++++.+..+. +...+..++..+...|++++|...++++++.. +.+...+..++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAF-DVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 345777888999999999999999998876433 67888999999999999999999999999874 6678888889999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC-CchhhhhhhHHHHHHHHHH
Q 038622 485 LCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS-DRETSMVRGFLKIRKFQDA 563 (587)
Q Consensus 485 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~A 563 (587)
+...|+ +++|.+.++++++.. +.+...+..++.++...|++++|...++++++..|.. ..+..++.++...|++++|
T Consensus 86 ~~~~~~-~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQK-YDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTC-HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcC-HHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHH
Confidence 999999 999999999999853 3478899999999999999999999999999999876 4578899999999999999
Q ss_pred HHhcchhhhccCch
Q 038622 564 LATFGDILDSRMPR 577 (587)
Q Consensus 564 ~~~~~~~~~~~~~~ 577 (587)
+..++++++..+..
T Consensus 164 ~~~~~~~~~~~~~~ 177 (186)
T 3as5_A 164 LPHFKKANELDEGA 177 (186)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcCCCc
Confidence 99999998876443
No 83
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.50 E-value=1.5e-12 Score=116.07 Aligned_cols=212 Identities=10% Similarity=-0.053 Sum_probs=119.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-CcchH
Q 038622 334 NSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPD---KFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCE-P-DIVTY 408 (587)
Q Consensus 334 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~-~~~~~ 408 (587)
+...+...+..+...|++++|+..|++++..... + ...+..++.++...|++++|+..|+++++..+. | ....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 4445555555555556666666666555553211 1 334455555555555555555555555553211 1 12334
Q ss_pred HHHHHHHHh--------cCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 038622 409 GTLIGGLCK--------AGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKH 480 (587)
Q Consensus 409 ~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 480 (587)
..++.++.. .|++++|...|+++.+..+. +......+... ...... ....+..
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~--------------~~~~~~----~~~~~~~ 153 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKI--------------RELRAK----LARKQYE 153 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHH--------------HHHHHH----HHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHH--------------HHHHHH----HHHHHHH
Confidence 445555555 55555555555555543211 11111111100 000000 0011356
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHcc----------CCHhHHHHHHHHHHhcCCCCCc--
Q 038622 481 VFRGLCNGGGPIGEAVDFVIEMLERGFL-P-EFSSFYMLAEGLVSL----------GKEETLVELIDMVMDKAKFSDR-- 546 (587)
Q Consensus 481 l~~~~~~~~~~~~~A~~~~~~~~~~~~~-p-~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~-- 546 (587)
++..+...|+ +++|+..++++++.... + .+.++..++.+|... |++++|+..++++++..|.++.
T Consensus 154 la~~~~~~g~-~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 232 (261)
T 3qky_A 154 AARLYERREL-YEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR 232 (261)
T ss_dssp HHHHHHHTTC-HHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHHHHHHccC-HHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence 7788889999 99999999999975311 1 356888999999877 8999999999999999998753
Q ss_pred --hhhhhhhHHHHHHHHHHHHh
Q 038622 547 --ETSMVRGFLKIRKFQDALAT 566 (587)
Q Consensus 547 --~~~~~~~~~~~~~~~~A~~~ 566 (587)
...+..++...++++++...
T Consensus 233 ~a~~~l~~~~~~~~~~~~~~~~ 254 (261)
T 3qky_A 233 TAEELYTRARQRLTELEGDASL 254 (261)
T ss_dssp HHHHHHHHHHHHHHHHHTCTTC
T ss_pred HHHHHHHHHHHHHHHhhhhhHH
Confidence 34444555666666655444
No 84
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.50 E-value=9.4e-14 Score=138.33 Aligned_cols=163 Identities=11% Similarity=0.111 Sum_probs=130.0
Q ss_pred HhhHHHHHHHHHHcCChhhHHHHHHhhc---cCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHH
Q 038622 20 VSTFNILIKALCKAHQIRPAILMMEEMP---GYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVL 96 (587)
Q Consensus 20 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 96 (587)
..+|+++|++|++.|++++|..+|++|. ..|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3579999999999999999999998765 3478999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC------cccHHHHHHH
Q 038622 97 VHGFCKEGR-IEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPD------VFTYNSLISG 169 (587)
Q Consensus 97 ~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~ 169 (587)
+.++++.|+ .++|.++|++|.+.|+.||..+|+.++....+. .+++..+++ ..++.|+ ..+...+.+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHHH
Confidence 999999998 478999999999999999999999887654443 444444444 2233333 3444556666
Q ss_pred HHhcCC---------HHHHHHHHHHHH
Q 038622 170 LCKLGE---------VEEAVEILNQMI 187 (587)
Q Consensus 170 ~~~~g~---------~~~a~~~~~~~~ 187 (587)
|.+.+. .++-.+.|++-+
T Consensus 282 ~s~d~~~s~pk~~~~~~~L~~~~~~Ql 308 (1134)
T 3spa_A 282 YAKDGRVSYPKLHLPLKTLQCLFEKQL 308 (1134)
T ss_dssp HCCCSCCCCCCCSSCHHHHHHHHHHHH
T ss_pred HccCCCCcCccccCCHHHHHHHHHHHH
Confidence 665542 355555555543
No 85
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.48 E-value=2.7e-13 Score=115.78 Aligned_cols=172 Identities=8% Similarity=-0.030 Sum_probs=124.5
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHH----------------HHHHHHhcCChHHHHHHHHHHHH
Q 038622 370 KFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGT----------------LIGGLCKAGRVEVASKLLRSIQM 433 (587)
Q Consensus 370 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~ 433 (587)
...+...+..+...|++++|+..|+++++.++. +...+.. ++.++...|++++|+..++++++
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344555667788899999999999998885332 4556666 88888888888888888888888
Q ss_pred cCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCCCCHH
Q 038622 434 KGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGG-PIGEAVDFVIEMLERGFLPEFS 512 (587)
Q Consensus 434 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~A~~~~~~~~~~~~~p~~~ 512 (587)
..+. +...+..++.++...|++++|+..|+++++.+ |.+...+..++..+...|. ..+.+...+++++. ..|...
T Consensus 83 ~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 158 (208)
T 3urz_A 83 KAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQY 158 (208)
T ss_dssp HCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHH
T ss_pred HCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhH
Confidence 6544 56788888888888888888888888888874 6677777777777665543 13445566666542 223334
Q ss_pred HHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCc
Q 038622 513 SFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDR 546 (587)
Q Consensus 513 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 546 (587)
.+..++.++...|++++|+..++++++..|..+.
T Consensus 159 a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~ 192 (208)
T 3urz_A 159 ARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEA 192 (208)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHH
Confidence 5566777888888888888888888888886543
No 86
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.48 E-value=8.8e-13 Score=112.60 Aligned_cols=126 Identities=11% Similarity=0.094 Sum_probs=54.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcc
Q 038622 446 VIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSL 524 (587)
Q Consensus 446 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 524 (587)
++.++...|++++|+..|+++++.+ |.+...+..++.++...|+ +++|+..|+++++. .| ++.++..++.+|...
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQ-EKDALRMYEKILQL--EADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence 4444444555555555555544442 3344444444444444444 55555555554442 23 344444444444433
Q ss_pred CC--HhHHHHHHHHHHhcCCCCCchhhhhhhHHHHHHHHHHHHhcchhhhccC
Q 038622 525 GK--EETLVELIDMVMDKAKFSDRETSMVRGFLKIRKFQDALATFGDILDSRM 575 (587)
Q Consensus 525 g~--~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 575 (587)
|+ .+.+...++++....|....++..+.++...|++++|+..|+++++..|
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P 188 (208)
T 3urz_A 136 AEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFP 188 (208)
T ss_dssp HHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSC
T ss_pred hHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 32 2233333433332222111233344444444455555555555444444
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.47 E-value=1.2e-12 Score=118.52 Aligned_cols=210 Identities=11% Similarity=-0.033 Sum_probs=109.9
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HhhHHHHHHHHHhcCCHHHH
Q 038622 315 RIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIME----GLKPD-KFTYNSLLTYYCRAGDIKRA 389 (587)
Q Consensus 315 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~A 389 (587)
++++|...|.++ +..|...|++++|...|.+++.. +..++ ..++..++.+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477777776665 23456677777777777777652 11111 34566667777777777777
Q ss_pred HHHHHHHHHCCCC-CC----cchHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCC-C----hHhHHHHHHHHHhcCCHHH
Q 038622 390 ADIVQNMTSNGCE-PD----IVTYGTLIGGLCKA-GRVEVASKLLRSIQMKGIVL-T----PQAYNPVIQALFRRKRTTE 458 (587)
Q Consensus 390 ~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~ 458 (587)
+..+++.+..... .+ ..++..++.+|... |++++|+..++++.+..+.. + ..++..++..+...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 7777766553110 01 23455566666664 66666666666665531110 0 2345555666666666666
Q ss_pred HHHHHHHHHhcCCCCCH------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHH--cc
Q 038622 459 AMRLFREMMEKADPPDA------LTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEF------SSFYMLAEGLV--SL 524 (587)
Q Consensus 459 A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~------~~~~~l~~~~~--~~ 524 (587)
|+..|+++++....... ..+..++.++...|+ +++|+..++++++ +.|+. ..+..++..+. ..
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~ 253 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATD-AVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDS 253 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTC-HHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCH
Confidence 66666666654211111 023444555555565 6666666666654 23321 12233444443 34
Q ss_pred CCHhHHHHHHHHHHhcCC
Q 038622 525 GKEETLVELIDMVMDKAK 542 (587)
Q Consensus 525 g~~~~A~~~~~~~~~~~~ 542 (587)
+++++|+..|+++...+|
T Consensus 254 ~~~~~A~~~~~~~~~l~~ 271 (292)
T 1qqe_A 254 EQLSEHCKEFDNFMRLDK 271 (292)
T ss_dssp TTHHHHHHHHTTSSCCCH
T ss_pred HHHHHHHHHhccCCccHH
Confidence 455555555555544444
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.46 E-value=3.3e-12 Score=113.72 Aligned_cols=188 Identities=12% Similarity=0.084 Sum_probs=107.0
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-C-ChHhHH
Q 038622 370 KFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPD---IVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIV-L-TPQAYN 444 (587)
Q Consensus 370 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~ 444 (587)
...+..++..+...|++++|+..|+.+++..+. + ...+..++.++...|++++|...|+++.+..+. | ...++.
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 334444455555555555555555555543211 1 334445555555555555555555555543221 0 123444
Q ss_pred HHHHHHHh--------cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 038622 445 PVIQALFR--------RKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYM 516 (587)
Q Consensus 445 ~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ 516 (587)
.++.++.. .|++++|+..|+++++.. |.+........ .+..+.. .-...+..
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~---------------~~~~~~~----~~~~~~~~ 153 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQ---------------KIRELRA----KLARKQYE 153 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHH---------------HHHHHHH----HHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHH---------------HHHHHHH----HHHHHHHH
Confidence 45555555 555555555555555431 11111111100 0000000 00112477
Q ss_pred HHHHHHccCCHhHHHHHHHHHHhcCCCCC----chhhhhhhHHHH----------HHHHHHHHhcchhhhccCchh
Q 038622 517 LAEGLVSLGKEETLVELIDMVMDKAKFSD----RETSMVRGFLKI----------RKFQDALATFGDILDSRMPRK 578 (587)
Q Consensus 517 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~~----------~~~~~A~~~~~~~~~~~~~~~ 578 (587)
++.+|.+.|++++|+..++++++..|.+. .+..++.+|... |++++|+..|+++++..|...
T Consensus 154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence 89999999999999999999999998753 478888888877 999999999999999886654
No 89
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.46 E-value=2.8e-11 Score=106.47 Aligned_cols=267 Identities=11% Similarity=0.058 Sum_probs=178.2
Q ss_pred HHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 038622 274 SLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVED 353 (587)
Q Consensus 274 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 353 (587)
-..-.|.+..++.-. .+............+.+++...|++... ...+|....+..+.. |...+
T Consensus 22 n~fy~G~yq~~i~e~---~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~---- 84 (310)
T 3mv2_B 22 QNYYTGNFVQCLQEI---EKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK---- 84 (310)
T ss_dssp HHHTTTCHHHHTHHH---HTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT----
T ss_pred HHHHhhHHHHHHHHH---HhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc----
Confidence 344567777766632 2221122233444455667777766531 111333333333333 33322
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 038622 354 AAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGC-EPDIVTYGTLIGGLCKAGRVEVASKLLRSIQ 432 (587)
Q Consensus 354 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 432 (587)
|+..+++.+..+ .++...+..++.++...|++++|++++.+.+..+. .-+...+..++.++.+.|+.+.|.+.++++.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 677888777654 45556666888889999999999999999877654 1256677888999999999999999999998
Q ss_pred HcCCCC-----ChHhHHHHHHH--HHhcC--CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 038622 433 MKGIVL-----TPQAYNPVIQA--LFRRK--RTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEML 503 (587)
Q Consensus 433 ~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~ 503 (587)
+. .| +..+...++.+ ....| ++++|..+|+++.+. .|+......+..++...|+ +++|.+.++.+.
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~-~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRN-IAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTC-HHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCC-HHHHHHHHHHHH
Confidence 84 44 24455555544 44444 899999999998775 5553333334447888899 999999999766
Q ss_pred Hc-----CC---CC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCchhhhhhhHHHHHHHHHHHHhcc
Q 038622 504 ER-----GF---LP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDRETSMVRGFLKIRKFQDALATFG 568 (587)
Q Consensus 504 ~~-----~~---~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 568 (587)
+. .. .| ++.++.+++.+....|+ +|.++++++.+..|+.+....+ --+...|+++...|.
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~---~~k~~~Fd~~~~ky~ 307 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHH---QEIDAKFDELVRKYD 307 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHH---HHHHHHHHHHHHTCC
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHH---HHHHHHHHHHHHHhc
Confidence 42 00 25 68888889888888897 8999999999999987543322 235566777766653
No 90
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.46 E-value=9.4e-14 Score=138.33 Aligned_cols=116 Identities=15% Similarity=0.169 Sum_probs=102.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHH
Q 038622 90 NVTVNVLVHGFCKEGRIEDALSFIQEMVS---EGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSL 166 (587)
Q Consensus 90 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 166 (587)
..+|+.++.+|++.|++++|..+|++|.+ .|..||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 35689999999999999999999987754 478899999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 038622 167 ISGLCKLGE-VEEAVEILNQMILRDCSPNTITYNTLISTL 205 (587)
Q Consensus 167 ~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 205 (587)
+.++++.|+ .++|.++|++|...|+.||..+|+.++...
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~ 246 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEE 246 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChh
Confidence 999999987 478899999999999999999988776543
No 91
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.45 E-value=1e-12 Score=133.41 Aligned_cols=173 Identities=9% Similarity=-0.090 Sum_probs=99.6
Q ss_pred HhcCCHHHHHHHHHHHH--------HcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHh
Q 038622 346 CKSRRVEDAAQLMDQMI--------MEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCK 417 (587)
Q Consensus 346 ~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 417 (587)
...|++++|+..+++++ .. .+.+...+..++.++...|++++|+..++++++.++. +...+..++.++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 45566666666666665 32 1223445555666666666666666666666654322 44556666666666
Q ss_pred cCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHH
Q 038622 418 AGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVD 497 (587)
Q Consensus 418 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~ 497 (587)
.|++++|.+.|+++.+..+. +...+..++.++...|++++ +..|+++++.+ |.+...+..++.++...|+ +++|++
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~-~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGD-RVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCC-HHHHHH
Confidence 66666666666666664332 44556666666666666666 66666666653 4455556666666666666 666666
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHccCC
Q 038622 498 FVIEMLERGFLP-EFSSFYMLAEGLVSLGK 526 (587)
Q Consensus 498 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 526 (587)
.|+++++ +.| +..++..++.++...|+
T Consensus 556 ~~~~al~--l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPP--TSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCT--TSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcc--cCcccHHHHHHHHHHHHccCC
Confidence 6666665 345 35555666666655444
No 92
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.42 E-value=5.3e-12 Score=114.19 Aligned_cols=211 Identities=12% Similarity=0.007 Sum_probs=123.5
Q ss_pred CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CcchHHHHHHHHHhcCChHHH
Q 038622 350 RVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSN----GCEP-DIVTYGTLIGGLCKAGRVEVA 424 (587)
Q Consensus 350 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a 424 (587)
++++|...|.++ +..+...|++++|...|+++... +..+ ...++..++.+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 366777776665 23456667777777777766542 1111 134667777777777777777
Q ss_pred HHHHHHHHHcCCCC-C----hHhHHHHHHHHHhc-CCHHHHHHHHHHHHhcCC-CCC----HHHHHHHHHHHHhCCCCHH
Q 038622 425 SKLLRSIQMKGIVL-T----PQAYNPVIQALFRR-KRTTEAMRLFREMMEKAD-PPD----ALTYKHVFRGLCNGGGPIG 493 (587)
Q Consensus 425 ~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~ 493 (587)
+..++++....... + ..++..++.+|... |++++|+..|+++++... ..+ ..++..++..+...|+ ++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~ 175 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQ-YI 175 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCC-HH
Confidence 77777766531110 1 24566777777775 777777777777776410 001 2346666777777777 77
Q ss_pred HHHHHHHHHHHcCCCC-CH-----HHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCc------hhhhhhhHH--HHHH
Q 038622 494 EAVDFVIEMLERGFLP-EF-----SSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDR------ETSMVRGFL--KIRK 559 (587)
Q Consensus 494 ~A~~~~~~~~~~~~~p-~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~~~~~--~~~~ 559 (587)
+|+..++++++..... .. ..+..++.++...|++++|+..++++++..|.... ...++..+. ..++
T Consensus 176 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~ 255 (292)
T 1qqe_A 176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQ 255 (292)
T ss_dssp HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTT
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHH
Confidence 7777777777632111 11 14566777777777777777777777776665321 122233232 3455
Q ss_pred HHHHHHhcchhhhccCc
Q 038622 560 FQDALATFGDILDSRMP 576 (587)
Q Consensus 560 ~~~A~~~~~~~~~~~~~ 576 (587)
+.+|+..|+++....+.
T Consensus 256 ~~~A~~~~~~~~~l~~~ 272 (292)
T 1qqe_A 256 LSEHCKEFDNFMRLDKW 272 (292)
T ss_dssp HHHHHHHHTTSSCCCHH
T ss_pred HHHHHHHhccCCccHHH
Confidence 77777777776665543
No 93
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.41 E-value=1.7e-10 Score=102.81 Aligned_cols=224 Identities=12% Similarity=0.046 Sum_probs=167.0
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHH----Hhc---CCH
Q 038622 316 IEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSR--RVEDAAQLMDQMIMEGLKPDKFTYNSLLTYY----CRA---GDI 386 (587)
Q Consensus 316 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~ 386 (587)
.++|+..++.++..+ |.+..+|+.-..++...+ ++++++..++.++...++ +..+|+.-..++ ... +++
T Consensus 49 s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 49 SERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCH
Confidence 356777777776665 555666666666666666 777777777777765322 344454444444 344 678
Q ss_pred HHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChH--HHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC------HHH
Q 038622 387 KRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVE--VASKLLRSIQMKGIVLTPQAYNPVIQALFRRKR------TTE 458 (587)
Q Consensus 387 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~ 458 (587)
++++.+++.+++.++. +..+|..-..++...|.++ +++++++++.+.++. +..+|+.-..++...|. +++
T Consensus 127 ~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 127 YREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHH
Confidence 8888888888876544 6677777777777778777 888888888887665 77888888888887776 899
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHccCCHhHHHHHHHH
Q 038622 459 AMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERG-FLP-EFSSFYMLAEGLVSLGKEETLVELIDM 536 (587)
Q Consensus 459 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 536 (587)
+++.+.+++..+ |.|...|......+...|+..++...+..++++.+ ..| ++.++..++.+|.+.|+.++|+++++.
T Consensus 205 El~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 205 ELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 999999999875 78888898888888888885666777888777532 123 788999999999999999999999999
Q ss_pred HHh-cCCCC
Q 038622 537 VMD-KAKFS 544 (587)
Q Consensus 537 ~~~-~~~~~ 544 (587)
+.+ .+|..
T Consensus 284 l~~~~Dpir 292 (306)
T 3dra_A 284 LKSKYNPIR 292 (306)
T ss_dssp HHHTTCGGG
T ss_pred HHhccChHH
Confidence 986 57765
No 94
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.40 E-value=4.4e-13 Score=107.47 Aligned_cols=131 Identities=11% Similarity=-0.060 Sum_probs=91.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Q 038622 411 LIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGG 490 (587)
Q Consensus 411 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 490 (587)
|+.++...|++++|++.++......+. ++..+..++.+|...|++++|++.|+++++.+ |.+...+..++.++...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCc
Confidence 455556667777777777777653211 33556677778888888888888888887764 6667777777777777777
Q ss_pred CHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHH-HHHHHhcCCCCCc
Q 038622 491 PIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVEL-IDMVMDKAKFSDR 546 (587)
Q Consensus 491 ~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~ 546 (587)
+++|+..|+++++ +.| ++.++..++.+|.+.|++++|.+. ++++++.+|.+..
T Consensus 81 -~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~ 135 (150)
T 4ga2_A 81 -TDKAVECYRRSVE--LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPA 135 (150)
T ss_dssp -HHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHH
T ss_pred -hHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHH
Confidence 8888888888877 345 677777888888888877766554 5778887777643
No 95
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.39 E-value=3.8e-12 Score=114.97 Aligned_cols=228 Identities=15% Similarity=0.091 Sum_probs=154.0
Q ss_pred HccCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-CHhhHHHH
Q 038622 311 CKLKRIEEAEEIFDEMEIQ-------GISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIME------GLKP-DKFTYNSL 376 (587)
Q Consensus 311 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~-~~~~~~~l 376 (587)
...|++++|+..+++.... ..+....++..++..+...|++++|...+++++.. +..| ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567777777777665442 22334667888889999999999999999998864 2122 34578888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC-----CC-CC-CcchHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCC-ChHh
Q 038622 377 LTYYCRAGDIKRAADIVQNMTSN-----GC-EP-DIVTYGTLIGGLCKAGRVEVASKLLRSIQMK------GIVL-TPQA 442 (587)
Q Consensus 377 ~~~~~~~~~~~~A~~~~~~~~~~-----~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~ 442 (587)
+.++...|++++|...+++++.. +. .| ....+..++..+...|++++|..+++++.+. ...| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 89999999999999999988764 11 12 3557788899999999999999999988775 1122 2357
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCC-CHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---Hc-C-CCC
Q 038622 443 YNPVIQALFRRKRTTEAMRLFREMMEK-------ADPP-DALTYKHVFRGLCNGGGPIGEAVDFVIEML---ER-G-FLP 509 (587)
Q Consensus 443 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~---~~-~-~~p 509 (587)
+..++.++...|++++|..+++++++. ...+ ....+..+.......+. ...+.. +..+. +. + ..|
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~ 249 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDK-RRDSAP-YGEYGSWYKACKVDSP 249 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCC-CCC-------------CCCCCCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCc-hhHHHH-HHHHHHHHHhcCCCCH
Confidence 788999999999999999999999873 1122 22233333333333222 222222 22221 11 0 123
Q ss_pred -CHHHHHHHHHHHHccCCHhHHHHHHHHHHhc
Q 038622 510 -EFSSFYMLAEGLVSLGKEETLVELIDMVMDK 540 (587)
Q Consensus 510 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 540 (587)
...++..++.+|...|++++|..+++++++.
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3567788999999999999999999998764
No 96
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.39 E-value=1.7e-12 Score=104.02 Aligned_cols=145 Identities=15% Similarity=0.101 Sum_probs=112.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC
Q 038622 376 LLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKR 455 (587)
Q Consensus 376 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 455 (587)
|+..+...|++++|+..++......+. +...+..++.+|...|++++|++.|+++++..+. +..+|..++.++...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCc
Confidence 445556677888888888887764221 3556778888999999999999999998886544 67888999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHcCCCC-CHHHHHHHHHHHHccCC
Q 038622 456 TTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVD-FVIEMLERGFLP-EFSSFYMLAEGLVSLGK 526 (587)
Q Consensus 456 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~-~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 526 (587)
+++|+..|+++++.+ |.+...+..++..+...|+ +++|.+ +++++++ +.| ++.++...+.++...|+
T Consensus 81 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~-~~~aa~~~~~~al~--l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDV-TDGRAKYWVERAAK--LFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCS-SSSHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhCc
Confidence 999999999999874 6677888888888888888 766555 4688888 456 68888888888888775
No 97
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.38 E-value=2.2e-12 Score=116.53 Aligned_cols=228 Identities=16% Similarity=0.071 Sum_probs=160.2
Q ss_pred HhcCCHHHHHHHHHHHHHc-------CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CcchHHHH
Q 038622 346 CKSRRVEDAAQLMDQMIME-------GLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSN------GCEP-DIVTYGTL 411 (587)
Q Consensus 346 ~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~-~~~~~~~l 411 (587)
...|++++|+..+++++.. ..+....++..++.++...|++++|...+++++.. +..| ...++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567888888888777752 11223457888899999999999999999988764 1112 35578889
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc-----CC--CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhc------CC-CCCHHH
Q 038622 412 IGGLCKAGRVEVASKLLRSIQMK-----GI--VLTPQAYNPVIQALFRRKRTTEAMRLFREMMEK------AD-PPDALT 477 (587)
Q Consensus 412 ~~~~~~~~~~~~a~~~~~~~~~~-----~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~ 477 (587)
+.++...|++++|...++++... +. +.....+..++..+...|++++|+..++++++. +. +.....
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998764 11 123467888999999999999999999999985 11 223456
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHc-------CCCC-CHHHHHHHHHHHHccCCHhHHHH------HHHHHHhcCCC
Q 038622 478 YKHVFRGLCNGGGPIGEAVDFVIEMLER-------GFLP-EFSSFYMLAEGLVSLGKEETLVE------LIDMVMDKAKF 543 (587)
Q Consensus 478 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~~~A~~------~~~~~~~~~~~ 543 (587)
+..++..+...|+ +++|..+++++++. ...+ ....+..++..+...+....+.. .++......|.
T Consensus 172 ~~~la~~~~~~g~-~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGK-YQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPT 250 (283)
T ss_dssp HHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHH
T ss_pred HHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHH
Confidence 7788888999999 99999999999863 1123 34455556655555444433333 22222222121
Q ss_pred C-CchhhhhhhHHHHHHHHHHHHhcchhhhcc
Q 038622 544 S-DRETSMVRGFLKIRKFQDALATFGDILDSR 574 (587)
Q Consensus 544 ~-~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 574 (587)
. ..+..++.+|...|++++|+..|+++++..
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 1 236788899999999999999999988753
No 98
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.38 E-value=1.1e-11 Score=107.26 Aligned_cols=186 Identities=10% Similarity=-0.025 Sum_probs=107.6
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh--HhHH
Q 038622 369 DKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPD--IVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTP--QAYN 444 (587)
Q Consensus 369 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~ 444 (587)
+...+..++..+...|++++|+..|++++...+... ...+..++.++...|++++|+..|+++.+..+.... .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 344566667778888888888888888887532211 246777888888888888888888888876433111 2566
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 038622 445 PVIQALFR------------------RKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERG 506 (587)
Q Consensus 445 ~l~~~~~~------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 506 (587)
.++.++.. .|++++|+..|+++++.. |.+.......... +. . ....
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l----~~-~------~~~~---- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRL----VF-L------KDRL---- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHH----HH-H------HHHH----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHH----HH-H------HHHH----
Confidence 66666654 345566666666665542 2222111100000 00 0 0000
Q ss_pred CCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCC----chhhhhhhHHHHHHHHHHHHhcchhhhcc
Q 038622 507 FLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSD----RETSMVRGFLKIRKFQDALATFGDILDSR 574 (587)
Q Consensus 507 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 574 (587)
......++..|.+.|++++|+..++++++..|.++ .+..++.+|.+.|++++|++.++++....
T Consensus 147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 00113455666666666666666666666666542 35566666666666666666666665544
No 99
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.38 E-value=1.3e-12 Score=108.24 Aligned_cols=162 Identities=13% Similarity=0.079 Sum_probs=120.0
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-
Q 038622 406 VTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRG- 484 (587)
Q Consensus 406 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~- 484 (587)
..+..++..+...|++++|...++++.+..+. +...+..++.++...|++++|+..+++++... | +..........
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~-p-~~~~~~~~~~~~ 83 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEY-Q-DNSYKSLIAKLE 83 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG-C-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc-C-ChHHHHHHHHHH
Confidence 45667777888888888888888887775333 56778888888888888888888888887753 3 54433332222
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC-C--chhhhhhhHHHHHHH
Q 038622 485 LCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS-D--RETSMVRGFLKIRKF 560 (587)
Q Consensus 485 ~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~ 560 (587)
+...+. ..+|+..++++++. .| ++..+..++.++...|++++|+..++++++.+|.. + .+..++.++...|+.
T Consensus 84 ~~~~~~-~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 160 (176)
T 2r5s_A 84 LHQQAA-ESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQG 160 (176)
T ss_dssp HHHHHT-SCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSS
T ss_pred HHhhcc-cchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCC
Confidence 122223 34678888888874 46 68888888888888999999999999888888864 2 477788888888888
Q ss_pred HHHHHhcchhhhc
Q 038622 561 QDALATFGDILDS 573 (587)
Q Consensus 561 ~~A~~~~~~~~~~ 573 (587)
++|+..|++.+.+
T Consensus 161 ~~A~~~y~~al~~ 173 (176)
T 2r5s_A 161 NAIASKYRRQLYS 173 (176)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHH
Confidence 8888888877653
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.37 E-value=2.4e-11 Score=123.39 Aligned_cols=173 Identities=12% Similarity=-0.039 Sum_probs=142.6
Q ss_pred HccCCHHHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh
Q 038622 311 CKLKRIEEAEEIFDEME--------IQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCR 382 (587)
Q Consensus 311 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 382 (587)
...|++++|++.++++. ... +.+...+..++.++...|++++|+..++++++.. +.+...+..++.++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 77899999999999988 443 5677888889999999999999999999999863 3367788889999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHH
Q 038622 383 AGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRL 462 (587)
Q Consensus 383 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 462 (587)
.|++++|+..|+++++.++. +...+..++.++...|++++ .+.|+++.+.++. +..+|..++.++...|++++|+..
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999986543 67788999999999999999 9999999987544 668899999999999999999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHhCC
Q 038622 463 FREMMEKADPPDALTYKHVFRGLCNGG 489 (587)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~l~~~~~~~~ 489 (587)
|+++++.+ |.+...+..++.++...+
T Consensus 557 ~~~al~l~-P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 557 LDEVPPTS-RHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHTSCTTS-TTHHHHHHHHHHHTC---
T ss_pred HHhhcccC-cccHHHHHHHHHHHHccC
Confidence 99998863 444556666776665544
No 101
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.36 E-value=7.7e-11 Score=102.01 Aligned_cols=190 Identities=9% Similarity=-0.013 Sum_probs=139.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc---chH
Q 038622 334 NSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLK-PD-KFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDI---VTY 408 (587)
Q Consensus 334 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~ 408 (587)
+...+..++..+...|++++|+..|++++...+. |. ...+..++.++...|++++|+..|+++++..+. +. ..+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~-~~~~~~a~ 81 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT-HPNIDYVM 81 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCcHHHHH
Confidence 4556777888899999999999999999985322 11 356788899999999999999999999986433 22 256
Q ss_pred HHHHHHHHh------------------cCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 038622 409 GTLIGGLCK------------------AGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKA 470 (587)
Q Consensus 409 ~~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 470 (587)
..++.++.. .|++++|...|+++++..+. +...+........ +....
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~~----------~~~~~---- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLVF----------LKDRL---- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHHH----------HHHHH----
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHHH----------HHHHH----
Confidence 667777664 57899999999999986433 3333322111100 00111
Q ss_pred CCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-C---HHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCc
Q 038622 471 DPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-E---FSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDR 546 (587)
Q Consensus 471 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 546 (587)
......++..+...|+ +++|+..++++++. .| + +.++..++.+|.+.|++++|++.++++....|....
T Consensus 147 ----~~~~~~~a~~~~~~~~-~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 147 ----AKYEYSVAEYYTERGA-WVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ----HHHHHHHHHHHHHHTC-HHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred ----HHHHHHHHHHHHHcCc-HHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 0112346677888999 99999999999984 35 3 367899999999999999999999999998887643
No 102
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.36 E-value=7.2e-11 Score=92.91 Aligned_cols=133 Identities=15% Similarity=0.225 Sum_probs=105.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 038622 407 TYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLC 486 (587)
Q Consensus 407 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 486 (587)
.+..++..+...|++++|..+++++.+..+. +...+..++..+...|++++|...++++...+ +.+...+..++..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 4566777888888888888888888776433 56677788888888888888888888888764 566777777888888
Q ss_pred hCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCC
Q 038622 487 NGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKF 543 (587)
Q Consensus 487 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 543 (587)
..|+ +++|.+.++++++.. +.+...+..++.++...|++++|...++++++..|.
T Consensus 81 ~~~~-~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 81 KQGD-YDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TTTC-HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HhcC-HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 8888 888988888888743 336778888888888889999999888888887764
No 103
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.34 E-value=8.5e-12 Score=112.34 Aligned_cols=163 Identities=11% Similarity=-0.006 Sum_probs=103.3
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHH-HHH
Q 038622 404 DIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYK-HVF 482 (587)
Q Consensus 404 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~ 482 (587)
+...+..++..+...|++++|...++++....+. +...+..++.++...|++++|...++++... .|+..... ...
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHH
Confidence 3445566666666777777777777777665433 4566667777777777777777777776664 23333222 222
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC--C-chhhhhhhHHHHH
Q 038622 483 RGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS--D-RETSMVRGFLKIR 558 (587)
Q Consensus 483 ~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~ 558 (587)
..+...++ .++|+..++++++. .| +..++..++.+|...|++++|+..++++++.+|.. . .+..++.++...|
T Consensus 193 ~~l~~~~~-~~~a~~~l~~al~~--~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 193 IELLXQAA-DTPEIQQLQQQVAE--NPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHT-SCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHhhcc-cCccHHHHHHHHhc--CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 23445555 66677777777763 34 56677777777777777777777777777777654 2 3566666677777
Q ss_pred HHHHHHHhcchhhh
Q 038622 559 KFQDALATFGDILD 572 (587)
Q Consensus 559 ~~~~A~~~~~~~~~ 572 (587)
+.++|...|++.+.
T Consensus 270 ~~~~a~~~~r~al~ 283 (287)
T 3qou_A 270 TGDALASXYRRQLY 283 (287)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHH
Confidence 77777777666554
No 104
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.33 E-value=7e-09 Score=100.37 Aligned_cols=420 Identities=13% Similarity=0.031 Sum_probs=217.6
Q ss_pred hcC-ChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC-hHHH
Q 038622 67 EEG-NLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGH-VKQA 144 (587)
Q Consensus 67 ~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a 144 (587)
+.| +++.|+.+|+.+...- |. |+++.+..+|++.+.. .|+...|...+....+.++ .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~~-P~---------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLY-MS---------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHHH-HT---------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHHC-CC---------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 456 4888888888888752 21 8899999999999885 5788888888887777663 4556
Q ss_pred HHHHHHHHhC-CCCC-CcccHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCC-h-hhHHHHHHHHhccCCHHHHHH
Q 038622 145 LEVMDMMLQE-GFDP-DVFTYNSLISGLC----KLGEVEEAVEILNQMILRDCSPN-T-ITYNTLISTLCKENQVEEATE 216 (587)
Q Consensus 145 ~~~~~~~~~~-~~~~-~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~~~~~~a~~ 216 (587)
..+|+.++.. |..+ +...|...+..+. ..|+.+.+..+|++++.. |+. . ..|...... ........+..
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~~~~~lw~~Y~~f-E~~~~~~~~~~ 144 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT--PMGSLSELWKDFENF-ELELNKITGKK 144 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS--CCTTHHHHHHHHHHH-HHHHCHHHHHH
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC--hhhhHHHHHHHHHHH-HHHhccccHHH
Confidence 7777777653 3222 3455555554433 235677777788777763 211 1 111111111 01111111111
Q ss_pred HHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCC-hHHHHHHHHHHHHCC
Q 038622 217 LARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGM-LEEALKLLKEMESSG 295 (587)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~ 295 (587)
++.+. .+.+..|..+++.+...--..+...|...+..-...+. .+..
T Consensus 145 ~~~~~---------------------~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~----------- 192 (493)
T 2uy1_A 145 IVGDT---------------------LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGR----------- 192 (493)
T ss_dssp HHHHH---------------------HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHH-----------
T ss_pred HHHHH---------------------hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcch-----------
Confidence 11110 11233344444433321000122233332222111100 0000
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHH
Q 038622 296 CARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNS 375 (587)
Q Consensus 296 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 375 (587)
+..+.+..+|++++... |..+..|...+..+...|+.+.|..++++++.. +.+...+..
T Consensus 193 ------------------~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~ 251 (493)
T 2uy1_A 193 ------------------PHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY 251 (493)
T ss_dssp ------------------HHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH
T ss_pred ------------------hhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH
Confidence 00122334444444332 333444444444444555555555555555543 111111111
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC---------C---CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhH
Q 038622 376 LLTYYCRAGDIKRAADIVQNMTSN---------G---CEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAY 443 (587)
Q Consensus 376 l~~~~~~~~~~~~A~~~~~~~~~~---------~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 443 (587)
|....+.++. ++.+... + .......|...+....+.++.+.|..+|+++ .. +..+...|
T Consensus 252 ----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~ 322 (493)
T 2uy1_A 252 ----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVF 322 (493)
T ss_dssp ----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHH
T ss_pred ----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHH
Confidence 1110000111 1111100 0 0001245666677777788899999999998 32 22355566
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038622 444 NPVIQALFRRK-RTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLV 522 (587)
Q Consensus 444 ~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 522 (587)
...+..-...+ +.+.|..+|+.+++.. +.++..+...+......|+ .+.|..+++++. .....|...+..-.
T Consensus 323 i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~-~~~aR~l~er~~-----k~~~lw~~~~~fE~ 395 (493)
T 2uy1_A 323 IYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGD-EENARALFKRLE-----KTSRMWDSMIEYEF 395 (493)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC-HHHHHHHHHHSC-----CBHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 55454444444 6999999999999863 4455666667777777888 999999999862 35677777777777
Q ss_pred ccCCHhHHHHHHHHHHhcCC-----CCC-chhhhhhhHHHHHHHHHHHHhcchhhhccCc
Q 038622 523 SLGKEETLVELIDMVMDKAK-----FSD-RETSMVRGFLKIRKFQDALATFGDILDSRMP 576 (587)
Q Consensus 523 ~~g~~~~A~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 576 (587)
..|+.+.+..+++++.+.-. ++. ....|...--..|.+++.+..|.-+.-...+
T Consensus 396 ~~G~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~fe~~~g~l~~~~~~~~~~~~~~~~ 455 (493)
T 2uy1_A 396 MVGSMELFRELVDQKMDAIKADAILPPLPPREHNVQMEGILGRYHCFLDSFNFLDLKIRD 455 (493)
T ss_dssp HHSCHHHHHHHHHHHHHHHHTTCCBCCCCCC--CCCCCHHHHHHHHHHHHHCBTTBCCCC
T ss_pred HCCCHHHHHHHHHHHHHHhcccccCCcccccccHHHHHHHhhhHHHHHHHhhhhccccCC
Confidence 88999999999988875211 111 1233333334568888888888665544433
No 105
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.33 E-value=1.8e-09 Score=96.32 Aligned_cols=231 Identities=8% Similarity=0.039 Sum_probs=146.6
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----Hhc---CCHH
Q 038622 282 EEALKLLKEMESSGCARNVVTYNTLIDGFCKLK--RIEEAEEIFDEMEIQGISRNSVTYNTLIDGL----CKS---RRVE 352 (587)
Q Consensus 282 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~~ 352 (587)
++|+..+..++..+ |....+|+.-..++...| ++++++..++.++..+ |.+..+|+.-..++ ... ++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHH
Confidence 46666666666654 445556666666666666 6666666666666654 44555555544444 333 5667
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCC------hHHH
Q 038622 353 DAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIK--RAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGR------VEVA 424 (587)
Q Consensus 353 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~a 424 (587)
+++.++++++... +-+..+|..-..+....|.++ +++.+++++++.++. |...|.....++...++ ++++
T Consensus 128 ~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 128 REFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHH
Confidence 7777777777653 225556666666666666666 777777777765544 55566666666655555 7778
Q ss_pred HHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHH-HHHHHHHHHhcC--CCCCHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 038622 425 SKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTE-AMRLFREMMEKA--DPPDALTYKHVFRGLCNGGGPIGEAVDFVIE 501 (587)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~ 501 (587)
++.+++++..++. +..+|+.+...+...|+..+ +..+..++.+.+ -+.+...+..++..+.+.|+ .++|++.++.
T Consensus 206 l~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~-~~~A~~~~~~ 283 (306)
T 3dra_A 206 LNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKK-YNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTC-HHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCC-HHHHHHHHHH
Confidence 8888777776554 66778777777777776444 445666655432 14466677777777777777 8888888888
Q ss_pred HHHcCCCC-CHHHHHHHHH
Q 038622 502 MLERGFLP-EFSSFYMLAE 519 (587)
Q Consensus 502 ~~~~~~~p-~~~~~~~l~~ 519 (587)
+.+. ++| ....|...+.
T Consensus 284 l~~~-~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 284 LKSK-YNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHT-TCGGGHHHHHHHHH
T ss_pred HHhc-cChHHHHHHHHHHh
Confidence 8753 356 5555554443
No 106
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.33 E-value=1.9e-10 Score=98.24 Aligned_cols=176 Identities=11% Similarity=0.035 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcC----ChHHHHHHH
Q 038622 353 DAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAG----RVEVASKLL 428 (587)
Q Consensus 353 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~ 428 (587)
+|...|+++.+.| ++..+..+...+...+++++|+..|++..+.| +...+..++.+|.. + ++++|.++|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4566677766643 56666777777777777777777777777653 45666677777766 5 788888888
Q ss_pred HHHHHcCCCCChHhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHh----CCCCHHHHHHH
Q 038622 429 RSIQMKGIVLTPQAYNPVIQALFR----RKRTTEAMRLFREMMEKADPP--DALTYKHVFRGLCN----GGGPIGEAVDF 498 (587)
Q Consensus 429 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~----~~~~~~~A~~~ 498 (587)
++..+.+ ++.++..++..|.. .+++++|+.+|+++.+.+ +. ....+..++..+.. .++ +++|+.+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~-~~~~~~~a~~~Lg~~y~~g~g~~~d-~~~A~~~ 151 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS-ESDAAVDAQMLLGLIYASGVHGPED-DVKASEY 151 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST-TSHHHHHHHHHHHHHHHHTSSSSCC-HHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC-CCcchHHHHHHHHHHHHcCCCCCCC-HHHHHHH
Confidence 8776642 56677777777776 778888888888888764 21 25566667777666 556 8888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHcc-C-----CHhHHHHHHHHHHhcCC
Q 038622 499 VIEMLERGFLPEFSSFYMLAEGLVSL-G-----KEETLVELIDMVMDKAK 542 (587)
Q Consensus 499 ~~~~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~ 542 (587)
++++.+. .+++.++..|+.+|... | ++++|+.+++++.+.+.
T Consensus 152 ~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 152 FKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 8888873 34566777788877643 3 78888888888887764
No 107
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.32 E-value=6.8e-11 Score=101.04 Aligned_cols=178 Identities=14% Similarity=0.050 Sum_probs=149.6
Q ss_pred HHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC----CHHHHHHH
Q 038622 387 KRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRK----RTTEAMRL 462 (587)
Q Consensus 387 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~ 462 (587)
.+|...|++..+.| ++..+..++..|...+++++|..+|++..+.+ ++.++..++..|.. + ++++|+++
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 35778888888753 67788999999999999999999999999853 67888999999888 6 89999999
Q ss_pred HHHHHhcCCCCCHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHc----cCCHhHHH
Q 038622 463 FREMMEKADPPDALTYKHVFRGLCN----GGGPIGEAVDFVIEMLERGFLPE---FSSFYMLAEGLVS----LGKEETLV 531 (587)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~----~g~~~~A~ 531 (587)
|+++.+.+ +...+..++..+.. .++ +++|+.+++++.+.+ |+ +.++..|+.+|.. .+++++|+
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d-~~~A~~~~~~A~~~~--~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~ 149 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATD-VAHAITLLQDAARDS--ESDAAVDAQMLLGLIYASGVHGPEDDVKAS 149 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCC-HHHHHHHHHHHTSST--TSHHHHHHHHHHHHHHHHTSSSSCCHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccC-HHHHHHHHHHHHHcC--CCcchHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 99998854 66777778877766 667 999999999999854 43 8899999999998 88999999
Q ss_pred HHHHHHHhcCCCCCchhhhhhhHHHH-H-----HHHHHHHhcchhhhccCch
Q 038622 532 ELIDMVMDKAKFSDRETSMVRGFLKI-R-----KFQDALATFGDILDSRMPR 577 (587)
Q Consensus 532 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~~~~A~~~~~~~~~~~~~~ 577 (587)
.+++++.+.++.+.....++.+|... | ++++|+..|+++.+.+...
T Consensus 150 ~~~~~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~ 201 (212)
T 3rjv_A 150 EYFKGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDT 201 (212)
T ss_dssp HHHHHHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHH
Confidence 99999999855556678888877654 3 8999999999999877544
No 108
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.31 E-value=1.1e-09 Score=96.50 Aligned_cols=179 Identities=15% Similarity=0.104 Sum_probs=80.0
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCChhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 038622 144 ALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDC-SPNTITYNTLISTLCKENQVEEATELARVLT 222 (587)
Q Consensus 144 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 222 (587)
|+..+++....+ +++..++..++.++...|++++|++++.+.+..+. ..+..++..++.++.+.|+.+.|.+.++.+.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444455444432 22333334455555555555555555555544431 1234445555555555555555555555554
Q ss_pred hCCCCC-----CHhhHHHHHHH--HHhcC--ChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 038622 223 SKGILP-----DVCTFNSLIQG--LCLTS--NFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMES 293 (587)
Q Consensus 223 ~~~~~~-----~~~~~~~l~~~--~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 293 (587)
+. .| +..+...++.+ ....| ++.+|..+|+++... .|+..+...+..++...|++++|...++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 43 22 13333334333 22222 555555555555433 23311212222245555555555555554433
Q ss_pred CC---------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 038622 294 SG---------CARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQ 329 (587)
Q Consensus 294 ~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 329 (587)
.. -+.++.++..++.+....|+ +|.++++++...
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 20 02334444344333333444 455555555544
No 109
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.31 E-value=2.6e-09 Score=103.38 Aligned_cols=360 Identities=7% Similarity=-0.046 Sum_probs=188.9
Q ss_pred CChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHc-CC-CCChhhHHHHHHHHH----hcCCH
Q 038622 34 HQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGN-LDGALRIREQMVEH-GC-LVTNVTVNVLVHGFC----KEGRI 106 (587)
Q Consensus 34 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~-~~-~~~~~~~~~l~~~~~----~~~~~ 106 (587)
|+++.+..+|++.... .|+...|...+....+.++ .+....+|+.++.. |. +.+..+|...+..+. ..++.
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 8899999999999875 5789999988888777663 45677888887764 21 446677877776654 34678
Q ss_pred HHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHH
Q 038622 107 EDALSFIQEMVSEGFNPD--QFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILN 184 (587)
Q Consensus 107 ~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 184 (587)
+.+..+|++++.. |+. ...|......-.. .....+..++.... +.+..|..+++
T Consensus 106 ~~vR~iy~rAL~~--P~~~~~~lw~~Y~~fE~~-~~~~~~~~~~~~~~---------------------~~y~~ar~~y~ 161 (493)
T 2uy1_A 106 EKIRNGYMRALQT--PMGSLSELWKDFENFELE-LNKITGKKIVGDTL---------------------PIFQSSFQRYQ 161 (493)
T ss_dssp HHHHHHHHHHHTS--CCTTHHHHHHHHHHHHHH-HCHHHHHHHHHHHH---------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--hhhhHHHHHHHHHHHHHH-hccccHHHHHHHHh---------------------HHHHHHHHHHH
Confidence 8899999999874 322 1122222221111 11122222222111 11222222222
Q ss_pred HHHhCCCCCChhhHHHHHHHHhccC-------CHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 038622 185 QMILRDCSPNTITYNTLISTLCKEN-------QVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMK 257 (587)
Q Consensus 185 ~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 257 (587)
.+...-...+...|...+..-...+ ..+.+..+|++++.. .+..+..|...+..+...|+.+.|..+|++.+
T Consensus 162 ~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi 240 (493)
T 2uy1_A 162 QIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGI 240 (493)
T ss_dssp HHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2221100012223333333222110 023344555555553 23345555555555556666666666666666
Q ss_pred HcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHC--------CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 038622 258 TKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESS--------GCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQ 329 (587)
Q Consensus 258 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 329 (587)
.. |.+...+...+.. ...++. ...+.+..... ........|...+....+.++.+.|..+|.++ ..
T Consensus 241 ~~--P~~~~l~~~y~~~-~e~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~ 314 (493)
T 2uy1_A 241 EM--SDGMFLSLYYGLV-MDEEAV--YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN 314 (493)
T ss_dssp HH--CCSSHHHHHHHHH-TTCTHH--HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT
T ss_pred hC--CCcHHHHHHHHhh-cchhHH--HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC
Confidence 55 3333222222111 011110 11111110000 00112244566666666667788888888877 32
Q ss_pred CCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchH
Q 038622 330 GISRNSVTYNTLIDGLCKS-RRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTY 408 (587)
Q Consensus 330 ~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 408 (587)
.+.+...|...+..-... ++.+.|..+|+.+++.. +.++..+...+......|+.+.|..+|+++. .....|
T Consensus 315 -~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw 387 (493)
T 2uy1_A 315 -EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMW 387 (493)
T ss_dssp -SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHH
T ss_pred -CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHH
Confidence 122344444333322222 35888888888887752 2234445556666677788888888888862 145566
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHH
Q 038622 409 GTLIGGLCKAGRVEVASKLLRSIQM 433 (587)
Q Consensus 409 ~~l~~~~~~~~~~~~a~~~~~~~~~ 433 (587)
...+..-...|+.+.+.+++++..+
T Consensus 388 ~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 388 DSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6666666677888888888777764
No 110
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.29 E-value=6.5e-11 Score=91.27 Aligned_cols=101 Identities=15% Similarity=0.129 Sum_probs=90.4
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 038622 441 QAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAE 519 (587)
Q Consensus 441 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 519 (587)
..+...+..+.+.|++++|+..|+++++.+ |.+...+..++.++...|+ +++|+..++++++. .| +..++..++.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~-~~~A~~~~~~al~~--~p~~~~a~~~lg~ 89 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLME-FQRALDDCDTCIRL--DSKFIKGYIRKAA 89 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhcc-HHHHHHHHHHHHHh--hhhhhHHHHHHHH
Confidence 577888999999999999999999999875 7788888899999999999 99999999999984 46 7889999999
Q ss_pred HHHccCCHhHHHHHHHHHHhcCCCCC
Q 038622 520 GLVSLGKEETLVELIDMVMDKAKFSD 545 (587)
Q Consensus 520 ~~~~~g~~~~A~~~~~~~~~~~~~~~ 545 (587)
+|...|++++|++.++++++.+|.+.
T Consensus 90 ~~~~~~~~~~A~~~~~~al~l~P~~~ 115 (126)
T 4gco_A 90 CLVAMREWSKAQRAYEDALQVDPSNE 115 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCcCCH
Confidence 99999999999999999999999874
No 111
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.29 E-value=9.8e-11 Score=117.05 Aligned_cols=155 Identities=15% Similarity=0.064 Sum_probs=71.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHH
Q 038622 384 GDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLF 463 (587)
Q Consensus 384 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 463 (587)
|++++|...++++.+.... +...+..++..+...|++++|.+.++++.+..+. +...+..++.++...|++++|.+.+
T Consensus 3 g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp ------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4445555555554443221 3444555555555555555555555555553222 3445555555555555555555555
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcc---CCHhHHHHHHHHHHh
Q 038622 464 REMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSL---GKEETLVELIDMVMD 539 (587)
Q Consensus 464 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~ 539 (587)
+++++.. +.+...+..++..+...|+ +++|++.++++++. .| +..++..++.++... |++++|.+.++++++
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQ-AEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 5555543 3444455555555555555 55555555555552 23 455555555555555 555555555555555
Q ss_pred cCCCC
Q 038622 540 KAKFS 544 (587)
Q Consensus 540 ~~~~~ 544 (587)
.+|..
T Consensus 157 ~~p~~ 161 (568)
T 2vsy_A 157 QGVGA 161 (568)
T ss_dssp HTCCC
T ss_pred cCCcc
Confidence 55543
No 112
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.28 E-value=9.2e-11 Score=105.55 Aligned_cols=165 Identities=14% Similarity=0.088 Sum_probs=130.4
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChH-hHHHH
Q 038622 368 PDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQ-AYNPV 446 (587)
Q Consensus 368 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l 446 (587)
.+...+..++..+...|++++|...|+++....+. +...+..++.++...|++++|...++++.... |+.. .....
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~ 191 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVA 191 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHH
Confidence 34556677778888889999999999888876443 56778888888999999999999998887753 3433 33344
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-C--HHHHHHHHHHHHc
Q 038622 447 IQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-E--FSSFYMLAEGLVS 523 (587)
Q Consensus 447 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~--~~~~~~l~~~~~~ 523 (587)
...+...++.++|+..++++++.. |.+...+..++..+...|+ +++|+..+.++++. .| + ..++..++.++..
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~-~~~A~~~l~~~l~~--~p~~~~~~a~~~l~~~~~~ 267 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGR-NEEALELLFGHLRX--DLTAADGQTRXTFQEILAA 267 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTGGGGHHHHHHHHHHHH
T ss_pred HHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHccc-HHHHHHHHHHHHhc--ccccccchHHHHHHHHHHH
Confidence 445667788888999999998875 7778888888888999998 99999999999984 35 2 6788899999999
Q ss_pred cCCHhHHHHHHHHHHh
Q 038622 524 LGKEETLVELIDMVMD 539 (587)
Q Consensus 524 ~g~~~~A~~~~~~~~~ 539 (587)
.|+.++|...+++.+.
T Consensus 268 ~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 268 LGTGDALASXYRRQLY 283 (287)
T ss_dssp HCTTCHHHHHHHHHHH
T ss_pred cCCCCcHHHHHHHHHH
Confidence 9999999999988764
No 113
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.28 E-value=3.7e-11 Score=99.47 Aligned_cols=163 Identities=11% Similarity=0.095 Sum_probs=114.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHH-H
Q 038622 372 TYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQA-L 450 (587)
Q Consensus 372 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~ 450 (587)
.+...+..+...|++++|...++++++..+. +...+..++.++...|++++|...++++....+ ++..+...+.. +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHH
Confidence 3445666677778888888888777664332 556777778888888888888888887766432 33333332222 1
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhH
Q 038622 451 FRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEET 529 (587)
Q Consensus 451 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 529 (587)
...+...+|+..++++++.. |.+...+..++..+...|+ +++|+..++++++....+ +..++..++.++...|+.++
T Consensus 85 ~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~-~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGR-DEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc-HHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 22233445788888888864 6667788888888888888 999999999988743111 25678888999999999999
Q ss_pred HHHHHHHHHh
Q 038622 530 LVELIDMVMD 539 (587)
Q Consensus 530 A~~~~~~~~~ 539 (587)
|...|++++.
T Consensus 163 A~~~y~~al~ 172 (176)
T 2r5s_A 163 IASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998888764
No 114
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.28 E-value=8e-11 Score=92.65 Aligned_cols=132 Identities=15% Similarity=0.274 Sum_probs=116.8
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038622 441 QAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEG 520 (587)
Q Consensus 441 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 520 (587)
..+..++..+...|++++|..+++++++.+ +.+...+..++..+...|+ +++|...++++++.+ +.+...+..++.+
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 78 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGD-YDEAIEYYQKALELD-PRSAEAWYNLGNA 78 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcC-HHHHHHHHHHHHHHC-CCchHHHHHHHHH
Confidence 357788999999999999999999999874 6677888888888999999 999999999999853 3478889999999
Q ss_pred HHccCCHhHHHHHHHHHHhcCCCC-CchhhhhhhHHHHHHHHHHHHhcchhhhccC
Q 038622 521 LVSLGKEETLVELIDMVMDKAKFS-DRETSMVRGFLKIRKFQDALATFGDILDSRM 575 (587)
Q Consensus 521 ~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~ 575 (587)
+...|++++|...++++++..|.. ..+..++.++...|++++|...++++++..+
T Consensus 79 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 79 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 999999999999999999998876 4578889999999999999999999987664
No 115
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.27 E-value=2.9e-11 Score=96.01 Aligned_cols=102 Identities=10% Similarity=0.037 Sum_probs=91.4
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 038622 440 PQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLA 518 (587)
Q Consensus 440 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 518 (587)
...+..++..+...|++++|+..|++++..+ |.+...|..++.++...|+ +++|+..|+++++. .| ++.++..++
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~-~~~Ai~~~~~al~l--~P~~~~~~~~lg 111 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQ-FQQAADLYAVAFAL--GKNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--SSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcc-HHHHHHHHHHHHhh--CCCCcHHHHHHH
Confidence 4678889999999999999999999999975 7788889999999999999 99999999999984 56 788999999
Q ss_pred HHHHccCCHhHHHHHHHHHHhcCCCCC
Q 038622 519 EGLVSLGKEETLVELIDMVMDKAKFSD 545 (587)
Q Consensus 519 ~~~~~~g~~~~A~~~~~~~~~~~~~~~ 545 (587)
.+|...|++++|+..|+++++..|+++
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999998764
No 116
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.26 E-value=4.9e-11 Score=119.24 Aligned_cols=155 Identities=11% Similarity=-0.024 Sum_probs=123.7
Q ss_pred cCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHH
Q 038622 418 AGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVD 497 (587)
Q Consensus 418 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~ 497 (587)
.|++++|.+.++++.+..+. +...+..++..+...|++++|++.|+++++.. +.+...+..++..+...|+ +++|++
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~-~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQR-HAEAAV 78 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTC-HHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCC-HHHHHH
Confidence 47899999999999886433 57889999999999999999999999999975 6678889999999999999 999999
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC-CchhhhhhhHHHH---HHHHHHHHhcchhhh
Q 038622 498 FVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS-DRETSMVRGFLKI---RKFQDALATFGDILD 572 (587)
Q Consensus 498 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~A~~~~~~~~~ 572 (587)
.++++++. .| +...+..++.+|...|++++|++.++++++..|.. ..+..++.++... |++++|...++++++
T Consensus 79 ~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 79 LLQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 99999985 46 78999999999999999999999999999999976 4578889999999 999999999999998
Q ss_pred ccCch
Q 038622 573 SRMPR 577 (587)
Q Consensus 573 ~~~~~ 577 (587)
..+..
T Consensus 157 ~~p~~ 161 (568)
T 2vsy_A 157 QGVGA 161 (568)
T ss_dssp HTCCC
T ss_pred cCCcc
Confidence 87653
No 117
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.21 E-value=1e-10 Score=93.22 Aligned_cols=115 Identities=10% Similarity=-0.070 Sum_probs=97.6
Q ss_pred HHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 038622 427 LLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERG 506 (587)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 506 (587)
.++++....+. +...+..++..+...|++++|+..|++++..+ |.+...+..++.++...|+ +++|+..++++++.
T Consensus 9 ~~~~al~~~p~-~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~l- 84 (148)
T 2vgx_A 9 TIAMLNEISSD-TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQ-YDLAIHSYSYGAVM- 84 (148)
T ss_dssp SHHHHTTCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH-
T ss_pred hHHHHHcCCHh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhc-
Confidence 45555553211 44678889999999999999999999999875 7788888899999999999 99999999999984
Q ss_pred CCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCc
Q 038622 507 FLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDR 546 (587)
Q Consensus 507 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 546 (587)
.| ++.++..++.+|...|++++|+..++++++..|.++.
T Consensus 85 -~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 124 (148)
T 2vgx_A 85 -DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPE 124 (148)
T ss_dssp -STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGG
T ss_pred -CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCc
Confidence 46 7889999999999999999999999999999887643
No 118
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.21 E-value=3.7e-11 Score=109.56 Aligned_cols=205 Identities=11% Similarity=-0.008 Sum_probs=153.6
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 038622 312 KLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCK-SRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAA 390 (587)
Q Consensus 312 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 390 (587)
..|++++|.+++++..+.. +. .+.. .++++.|...|.++ +..|...|++++|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~----------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KT----------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CC----------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-cc----------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 3567788888888776542 11 1222 57788887777765 45678899999999
Q ss_pred HHHHHHHHCCC--C-C--CcchHHHHHHHHHhcCChHHHHHHHHHHHHcC--C-CCC--hHhHHHHHHHHHhcCCHHHHH
Q 038622 391 DIVQNMTSNGC--E-P--DIVTYGTLIGGLCKAGRVEVASKLLRSIQMKG--I-VLT--PQAYNPVIQALFRRKRTTEAM 460 (587)
Q Consensus 391 ~~~~~~~~~~~--~-~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~-~~~--~~~~~~l~~~~~~~g~~~~A~ 460 (587)
..+.++..... . + ....+..++.+|...|++++|+..++++.... . .+. ..++..++.+|.. |++++|+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 99998876311 1 1 13478889999999999999999999987641 1 111 3577889999988 9999999
Q ss_pred HHHHHHHhcCCCC-C----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHccCCHhHH
Q 038622 461 RLFREMMEKADPP-D----ALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGF-LPE----FSSFYMLAEGLVSLGKEETL 530 (587)
Q Consensus 461 ~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A 530 (587)
..|+++++..... + ..++..++..+...|+ +++|+..++++++... .+. ...+..++.++...|++++|
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A 214 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQK-FDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAA 214 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999999862111 1 4567788999999999 9999999999996310 111 33677888899999999999
Q ss_pred HHHHHHHHhcCCCCC
Q 038622 531 VELIDMVMDKAKFSD 545 (587)
Q Consensus 531 ~~~~~~~~~~~~~~~ 545 (587)
+..+++++ ..|...
T Consensus 215 ~~~~~~al-~~p~~~ 228 (307)
T 2ifu_A 215 QKCVRESY-SIPGFS 228 (307)
T ss_dssp HHHHHHHT-TSTTST
T ss_pred HHHHHHHh-CCCCCC
Confidence 99999999 887653
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.21 E-value=6.9e-10 Score=95.21 Aligned_cols=131 Identities=12% Similarity=-0.063 Sum_probs=95.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 038622 408 YGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCN 487 (587)
Q Consensus 408 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (587)
+..++..+...|++++|...++++. .|+...+..++.++...|++++|+..|+++++.. +.+...+..++.++..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 4456666777777777777777663 3466677777777777888888888887777764 5566677777777777
Q ss_pred CCCCHHHHHHHHHHHHHcC--------------CCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC
Q 038622 488 GGGPIGEAVDFVIEMLERG--------------FLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS 544 (587)
Q Consensus 488 ~~~~~~~A~~~~~~~~~~~--------------~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 544 (587)
.|+ +++|+..++++++.. ..| ...++..++.+|...|++++|+..++++++..|..
T Consensus 84 ~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 84 TEK-YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp TTC-HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred ccc-HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 777 888888888877632 111 23677888888888888888888888888888765
No 120
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.21 E-value=8.3e-12 Score=99.17 Aligned_cols=104 Identities=13% Similarity=-0.032 Sum_probs=93.8
Q ss_pred CCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC-Cchhh
Q 038622 472 PPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS-DRETS 549 (587)
Q Consensus 472 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~ 549 (587)
|.+...+..++..+...|+ +++|+..|+++++. .| ++.+|..++.+|...|++++|+..|+++++.+|.+ ..++.
T Consensus 33 p~~~~~~~~lg~~~~~~g~-~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 33 DDMMDDIYSYAYDFYNKGR-IEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 3345577788889999999 99999999999984 57 79999999999999999999999999999999987 45899
Q ss_pred hhhhHHHHHHHHHHHHhcchhhhccCchh
Q 038622 550 MVRGFLKIRKFQDALATFGDILDSRMPRK 578 (587)
Q Consensus 550 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 578 (587)
++.+|.+.|++++|+..|+++++..+.++
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999886654
No 121
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.19 E-value=7e-10 Score=85.46 Aligned_cols=112 Identities=11% Similarity=-0.054 Sum_probs=89.7
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 038622 405 IVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRG 484 (587)
Q Consensus 405 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 484 (587)
...+...+..+.+.|++++|++.|+++++..+. +...|..++.++...|++++|+..|+++++.+ |.+...+..++.+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHH
Confidence 345667788888888888888888888886543 67788888888888888988988888888875 6677788888888
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 038622 485 LCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGL 521 (587)
Q Consensus 485 ~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~ 521 (587)
+...|+ +++|++.|+++++ +.| +..+...|+.++
T Consensus 91 ~~~~~~-~~~A~~~~~~al~--l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 91 LVAMRE-WSKAQRAYEDALQ--VDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHTTC-HHHHHHHHHHHHH--HCTTCHHHHHHHHHHC
T ss_pred HHHCCC-HHHHHHHHHHHHH--HCcCCHHHHHHHHHhc
Confidence 888888 8899999988888 456 677777776653
No 122
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.18 E-value=1.5e-10 Score=105.47 Aligned_cols=224 Identities=12% Similarity=0.030 Sum_probs=163.4
Q ss_pred ccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038622 277 SRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCK-LKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDAA 355 (587)
Q Consensus 277 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 355 (587)
..|++++|.++++++.+.. +. .+.. .++++.|...|.++ +..|...|++++|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~----------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KT----------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CC----------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-cc----------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 4578889999999887643 11 1333 58899999888765 34677889999999
Q ss_pred HHHHHHHHcCC---CC--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C-CC--CcchHHHHHHHHHhcCChHHHH
Q 038622 356 QLMDQMIMEGL---KP--DKFTYNSLLTYYCRAGDIKRAADIVQNMTSNG--C-EP--DIVTYGTLIGGLCKAGRVEVAS 425 (587)
Q Consensus 356 ~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~-~~--~~~~~~~l~~~~~~~~~~~~a~ 425 (587)
..|.++..... .+ -..++..++.+|...|++++|+..+++.+... . .+ ...++..++.+|.. |++++|+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 99999876311 11 13478888999999999999999999887631 1 11 13567888999988 9999999
Q ss_pred HHHHHHHHcCCCC-C----hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCC----HHHHHHHHHHHHhCCCCHHHH
Q 038622 426 KLLRSIQMKGIVL-T----PQAYNPVIQALFRRKRTTEAMRLFREMMEKAD-PPD----ALTYKHVFRGLCNGGGPIGEA 495 (587)
Q Consensus 426 ~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~~A 495 (587)
..++++....... + ..++..++.++...|++++|+..|+++++... .++ ...+..++.++...|+ +++|
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~-~~~A 214 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRAD-YVAA 214 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCC-HHHH
Confidence 9999998752111 1 35788899999999999999999999998521 122 2245566667778899 9999
Q ss_pred HHHHHHHHHcCCCCCH-HH-----HHHHHHHHHccCCHhHHHH
Q 038622 496 VDFVIEMLERGFLPEF-SS-----FYMLAEGLVSLGKEETLVE 532 (587)
Q Consensus 496 ~~~~~~~~~~~~~p~~-~~-----~~~l~~~~~~~g~~~~A~~ 532 (587)
+..+++++ . .|+. .. ...++..+ ..|+.+.+..
T Consensus 215 ~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 215 QKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 99999998 4 5654 43 23344444 5677666655
No 123
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.17 E-value=6.5e-10 Score=92.11 Aligned_cols=128 Identities=12% Similarity=0.099 Sum_probs=107.0
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHhCCCCH--
Q 038622 416 CKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRG-LCNGGGPI-- 492 (587)
Q Consensus 416 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~-- 492 (587)
...|++++|...++++....+. +...|..++.++...|++++|+..|+++++.. |.+...+..++.+ +...|+ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~-~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQ-HMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTT-CCC
T ss_pred hhccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCC-cch
Confidence 4578899999999998886543 67889999999999999999999999999874 6677788888888 678888 8
Q ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCchh
Q 038622 493 GEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDRET 548 (587)
Q Consensus 493 ~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 548 (587)
++|+..++++++. .| +..++..++.+|...|++++|+..++++++..|.+....
T Consensus 98 ~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALAL--DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 9999999999985 46 788999999999999999999999999999999875433
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.15 E-value=1.4e-09 Score=88.92 Aligned_cols=131 Identities=15% Similarity=0.189 Sum_probs=101.9
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038622 441 QAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEG 520 (587)
Q Consensus 441 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 520 (587)
..+..++..+...|++++|...|+++++.. +.+...+..++..+...|+ +++|+..++++++.. +.++.++..++.+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~a~~~~-~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTEC-YGYALGDATRAIELD-KKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 456777888888888888888888888864 5667778888888888888 888888888888743 2367888888888
Q ss_pred HHccCCHhHHHHHHHHHHhcCCCCC-ch--hhhhhhHHHHHHHHHHHHhcchhhhcc
Q 038622 521 LVSLGKEETLVELIDMVMDKAKFSD-RE--TSMVRGFLKIRKFQDALATFGDILDSR 574 (587)
Q Consensus 521 ~~~~g~~~~A~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~A~~~~~~~~~~~ 574 (587)
+...|++++|+..++++++..|... .+ ...+..+...|++++|+..+.+.....
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV 147 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence 8888899999999988888888763 33 334444778888888888888776543
No 125
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.15 E-value=1.9e-08 Score=90.56 Aligned_cols=223 Identities=12% Similarity=0.074 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhc-C-CHHHHHHH
Q 038622 316 IEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSR-RVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRA-G-DIKRAADI 392 (587)
Q Consensus 316 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~A~~~ 392 (587)
.++|+++++.++..+ |.+..+|+.-..++...| .+++++.+++.++.... -+..+|+.-..++... + ++++++.+
T Consensus 70 se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~~~EL~~ 147 (349)
T 3q7a_A 70 SERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQDPVSEIEY 147 (349)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred CHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 345555555555554 444455555555555555 35666666666655422 2344455444444444 4 55666666
Q ss_pred HHHHHHCCCCCCcchHHHHHHHHHhcCChH--------HHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC-------HH
Q 038622 393 VQNMTSNGCEPDIVTYGTLIGGLCKAGRVE--------VASKLLRSIQMKGIVLTPQAYNPVIQALFRRKR-------TT 457 (587)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~ 457 (587)
++.+++.++. +..+|..-..++...|.++ ++++.++++.+.++. +..+|+....++...++ ++
T Consensus 148 ~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~ 225 (349)
T 3q7a_A 148 IHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQ 225 (349)
T ss_dssp HHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHH
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHH
Confidence 6666654333 4445544444444444444 777788887776555 66778877777777765 67
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCC-------------------HHHHHHHHHHHHHcC----C-CCCHHH
Q 038622 458 EAMRLFREMMEKADPPDALTYKHVFRGLCNGGGP-------------------IGEAVDFVIEMLERG----F-LPEFSS 513 (587)
Q Consensus 458 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------------------~~~A~~~~~~~~~~~----~-~p~~~~ 513 (587)
++++.+.+++... |.|...|..+...+...|.. ......+...+...+ . .+++.+
T Consensus 226 eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~a 304 (349)
T 3q7a_A 226 DELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLA 304 (349)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHH
Confidence 8888888888764 67777777777777666652 223333333333211 1 247888
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHH-hcCCC
Q 038622 514 FYMLAEGLVSLGKEETLVELIDMVM-DKAKF 543 (587)
Q Consensus 514 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~ 543 (587)
+..|+++|...|+.++|.++++.+. +.+|-
T Consensus 305 l~~l~d~~~~~~~~~~a~~~~~~l~~~~dpi 335 (349)
T 3q7a_A 305 LEYLADSFIEQNRVDDAAKVFEKLSSEYDQM 335 (349)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhhhChH
Confidence 8999999999999999999999986 44554
No 126
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.13 E-value=4.1e-10 Score=100.91 Aligned_cols=194 Identities=12% Similarity=-0.033 Sum_probs=91.3
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHH
Q 038622 370 KFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQA 449 (587)
Q Consensus 370 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 449 (587)
...+..++..+...|++++|+..|++++...+. +...+..++.++...|++++|...++++.+..+. +...+..++.+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 334455555555566666666666655553222 4445555666666666666666666666554322 34555666666
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhH
Q 038622 450 LFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEET 529 (587)
Q Consensus 450 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 529 (587)
+...|++++|+..|+++++.+ |.+...+...+..... ..++..... .......++......++..+ .|++++
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~i~~~l~~l~--~~~~~~ 153 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLA-KEQRLNFGDDIPSALR----IAKKKRWNS-IEERRIHQESELHSYLTRLI--AAERER 153 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH-HHTTCCCCSHHHHHHH----HHHHHHHHH-HHHTCCCCCCHHHHHHHHHH--HHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHH----HHHHHHHHH-HHHHHHhhhHHHHHHHHHHH--HHHHHH
Confidence 666666666666666665532 1111011111111111 111111111 11111223444444444433 456666
Q ss_pred HHHHHHHHHhcCCCCCc-hhhhhhhHHHH-HHHHHHHHhcchhhhc
Q 038622 530 LVELIDMVMDKAKFSDR-ETSMVRGFLKI-RKFQDALATFGDILDS 573 (587)
Q Consensus 530 A~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~A~~~~~~~~~~ 573 (587)
|++.++++++..|.+.. ...+...+.+. +.+++|...|.++.+.
T Consensus 154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 154 ELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 66666666666554422 22222223333 4556666666655553
No 127
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.12 E-value=5.9e-08 Score=86.97 Aligned_cols=187 Identities=10% Similarity=0.041 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCC-hHHHHHH
Q 038622 351 VEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAG--DIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGR-VEVASKL 427 (587)
Q Consensus 351 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~ 427 (587)
+++++.+++.++...+ -+..+|+.-..++...+ ++++++.++..+++.++. +..+|..-..++...|. ++++++.
T Consensus 90 l~~EL~~~~~~L~~~P-Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 4566666666666432 25555665555555555 366777777777665443 55566666666666666 4677777
Q ss_pred HHHHHHcCCCCChHhHHHHHHHHHhc--------------CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhC-----
Q 038622 428 LRSIQMKGIVLTPQAYNPVIQALFRR--------------KRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNG----- 488 (587)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 488 (587)
++++.+.++. +..+|+.....+... +.++++++.+.+++... |.|...|..+-..+...
T Consensus 168 ~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccc
Confidence 7777766544 566666666655544 45788888888888874 77777777666555554
Q ss_pred ------CCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHH---HHHccCCHhHHHHHHHHHHhcCCCC
Q 038622 489 ------GGPIGEAVDFVIEMLERGFLPEFS-SFYMLAE---GLVSLGKEETLVELIDMVMDKAKFS 544 (587)
Q Consensus 489 ------~~~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~---~~~~~g~~~~A~~~~~~~~~~~~~~ 544 (587)
+. ++++++.+.++++ +.|+.. .+..++. .....|..++...++.++.+.+|..
T Consensus 246 ~~~~~~~~-l~~el~~~~elle--~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r 308 (331)
T 3dss_A 246 LSVEKSTV-LQSELESCKELQE--LEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR 308 (331)
T ss_dssp CCHHHHHH-HHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGG
T ss_pred cchHHHHH-HHHHHHHHHHHHh--hCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcch
Confidence 34 7899999999998 457542 2222222 2235688889999999999999975
No 128
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.12 E-value=4.6e-10 Score=88.94 Aligned_cols=103 Identities=12% Similarity=-0.082 Sum_probs=92.1
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 038622 440 PQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLA 518 (587)
Q Consensus 440 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 518 (587)
...+..++..+...|++++|+..|++++..+ |.+...+..++.++...|+ +++|+..++++++. .| ++..+..++
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~--~p~~~~~~~~lg 93 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGL-YEQALQSYSYGALM--DINEPRFPFHAA 93 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhc--CCCCcHHHHHHH
Confidence 4667788999999999999999999999875 7788888899999999999 99999999999984 46 788899999
Q ss_pred HHHHccCCHhHHHHHHHHHHhcCCCCCc
Q 038622 519 EGLVSLGKEETLVELIDMVMDKAKFSDR 546 (587)
Q Consensus 519 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 546 (587)
.+|...|++++|+..++++++..|.++.
T Consensus 94 ~~~~~~g~~~~A~~~~~~al~~~p~~~~ 121 (142)
T 2xcb_A 94 ECHLQLGDLDGAESGFYSARALAAAQPA 121 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHTCGG
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCcc
Confidence 9999999999999999999999887644
No 129
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.09 E-value=1.9e-08 Score=90.91 Aligned_cols=165 Identities=13% Similarity=0.058 Sum_probs=119.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-CCCc----chHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-C----hHhHHH
Q 038622 376 LLTYYCRAGDIKRAADIVQNMTSNGC-EPDI----VTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVL-T----PQAYNP 445 (587)
Q Consensus 376 l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~~ 445 (587)
.+..+...|++++|..++++...... .|+. ..+..++..+...|++++|+..++++....... + ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667788888888888888876422 1221 123346667777788999999999888742221 2 136888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc-----CCCC-CHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCCCC-HHHH
Q 038622 446 VIQALFRRKRTTEAMRLFREMMEK-----ADPP-DALTYKHVFRGLCNGGGPIGEAVDFVIEMLER----GFLPE-FSSF 514 (587)
Q Consensus 446 l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~----~~~p~-~~~~ 514 (587)
++.+|...|++++|+.+|+++++. +..+ ...++..++..+...|+ +++|+.+++++++. +..+. ..++
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~-y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR-YEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 999999999999999999998852 1111 22366788888999999 99999999998852 11122 6788
Q ss_pred HHHHHHHHccCC-HhHHHHHHHHHHhcC
Q 038622 515 YMLAEGLVSLGK-EETLVELIDMVMDKA 541 (587)
Q Consensus 515 ~~l~~~~~~~g~-~~~A~~~~~~~~~~~ 541 (587)
..+|.+|.+.|+ +++|...+++++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i~ 267 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 899999999994 699999999987644
No 130
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.08 E-value=1.8e-10 Score=91.81 Aligned_cols=114 Identities=7% Similarity=-0.072 Sum_probs=98.1
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHh
Q 038622 461 RLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMD 539 (587)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 539 (587)
..|++++... |.+...+..++..+...|+ +++|+..++++++. .| ++.++..++.+|...|++++|+..++++++
T Consensus 8 ~~~~~al~~~-p~~~~~~~~~g~~~~~~g~-~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 83 (148)
T 2vgx_A 8 GTIAMLNEIS-SDTLEQLYSLAFNQYQSGX-YEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV 83 (148)
T ss_dssp CSHHHHTTCC-HHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHcCC-HhhHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3466666643 4455677788888999999 99999999999984 46 899999999999999999999999999999
Q ss_pred cCCCC-CchhhhhhhHHHHHHHHHHHHhcchhhhccCchh
Q 038622 540 KAKFS-DRETSMVRGFLKIRKFQDALATFGDILDSRMPRK 578 (587)
Q Consensus 540 ~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 578 (587)
.+|.+ ..+..++.+|...|++++|+..|+++++..+...
T Consensus 84 l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 123 (148)
T 2vgx_A 84 MDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXP 123 (148)
T ss_dssp HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCG
T ss_pred cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 99977 4588999999999999999999999998776533
No 131
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.06 E-value=2.6e-09 Score=98.35 Aligned_cols=129 Identities=9% Similarity=0.042 Sum_probs=82.4
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 038622 440 PQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPD---------------ALTYKHVFRGLCNGGGPIGEAVDFVIEMLE 504 (587)
Q Consensus 440 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 504 (587)
...+..++..+...|++++|+..|+++++.. +.+ ...+..++.++...|+ +++|+..++++++
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~-~~~A~~~~~~al~ 224 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQA-FSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh-hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH
Confidence 3455666666666666666666666666643 222 3566666666667776 7777777777776
Q ss_pred cCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC-CchhhhhhhHHHHHHHHHH-HHhcchhhh
Q 038622 505 RGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS-DRETSMVRGFLKIRKFQDA-LATFGDILD 572 (587)
Q Consensus 505 ~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~A-~~~~~~~~~ 572 (587)
. .| +..++..++.+|...|++++|+..++++++..|.+ ..+..++.++...|++.+| ...|+++..
T Consensus 225 ~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 225 L--DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp H--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 34 56667777777777777777777777777777665 3356666666677777666 334555443
No 132
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.05 E-value=1.1e-09 Score=84.47 Aligned_cols=102 Identities=12% Similarity=0.105 Sum_probs=81.2
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC----C----HH
Q 038622 441 QAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP----E----FS 512 (587)
Q Consensus 441 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p----~----~~ 512 (587)
.++..++..+.+.|++++|+..|+++++.. |.+...+..++.++...|+ +++|++.++++++. .| + ..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~-~~~A~~~~~~al~~--~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKK-FAECVQFCEKAVEV--GRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--HHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhh-HHHHHHHHHHHHHh--CcccchhhHHHHH
Confidence 456778888888888888888888888874 6677788888888888888 88888888888863 23 1 24
Q ss_pred HHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCc
Q 038622 513 SFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDR 546 (587)
Q Consensus 513 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 546 (587)
++..+|.++...|++++|++.++++++..|+++.
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~ 118 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPEL 118 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCHHH
Confidence 6778888888899999999999988888776543
No 133
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.05 E-value=2.7e-09 Score=83.49 Aligned_cols=117 Identities=12% Similarity=0.089 Sum_probs=88.7
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038622 439 TPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLA 518 (587)
Q Consensus 439 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 518 (587)
+...+..++..+...|++++|+..|+++++.. +.+...+..++..+...|+ +++|+..++++++.. +.+..++..++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~-~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLE-FQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTC-HHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 34677788888888888888888888888764 5567777778878888888 888888888888742 23678888888
Q ss_pred HHHHccCCHhHHHHHHHHHHhcCCCCC-chhhhhhhHHHHH
Q 038622 519 EGLVSLGKEETLVELIDMVMDKAKFSD-RETSMVRGFLKIR 558 (587)
Q Consensus 519 ~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 558 (587)
.++...|++++|+..++++++..|... .+..++.++...|
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 888888888888888888888887653 3555555555443
No 134
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.05 E-value=2e-08 Score=90.79 Aligned_cols=168 Identities=13% Similarity=0.036 Sum_probs=115.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---CC--hHh
Q 038622 373 YNSLLTYYCRAGDIKRAADIVQNMTSNGCEPD-----IVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIV---LT--PQA 442 (587)
Q Consensus 373 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~~~ 442 (587)
+...+..+...|++++|...++...+...... ...+..++..+...|++++|...++++...... +. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 33445556666777777777766665422111 012344566677778888888888887754211 11 347
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCC----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----CCC-CH
Q 038622 443 YNPVIQALFRRKRTTEAMRLFREMMEK--ADPPD----ALTYKHVFRGLCNGGGPIGEAVDFVIEMLERG----FLP-EF 511 (587)
Q Consensus 443 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~----~~p-~~ 511 (587)
++.++..|...|++++|+..|+++++. ..+.+ ...+..++..+...|+ +++|+.+++++++.. ... -.
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~-y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR-YEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhh-HHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 788899999999999999999998842 11222 1567788888999999 999999999988531 011 16
Q ss_pred HHHHHHHHHHHccCCHhHH-HHHHHHHHhcC
Q 038622 512 SSFYMLAEGLVSLGKEETL-VELIDMVMDKA 541 (587)
Q Consensus 512 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~~~ 541 (587)
.++..++.+|...|++++| ...+++++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 7888999999999999999 78788887543
No 135
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.05 E-value=1.6e-07 Score=84.49 Aligned_cols=231 Identities=10% Similarity=0.039 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-C-CHHHHHHHH
Q 038622 282 EEALKLLKEMESSGCARNVVTYNTLIDGFCKLK-RIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKS-R-RVEDAAQLM 358 (587)
Q Consensus 282 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~A~~~~ 358 (587)
++|+++++.++..+ |.+..+|+....++...| .+++++..++.++..+ |.+..+|+.-..++... + ++++++.++
T Consensus 71 e~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~~ 148 (349)
T 3q7a_A 71 ERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEYI 148 (349)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 45555555555544 344445555555555555 3555555555555543 44455555544444444 4 555555555
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHhcCCHH--------HHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCC-------hHH
Q 038622 359 DQMIMEGLKPDKFTYNSLLTYYCRAGDIK--------RAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGR-------VEV 423 (587)
Q Consensus 359 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~ 423 (587)
++++... +-+...|+.-..+....+.++ +++..++++++.++. |...|.....++...++ +++
T Consensus 149 ~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~e 226 (349)
T 3q7a_A 149 HGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQD 226 (349)
T ss_dssp HHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHH
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHHH
Confidence 5555432 123444444443333333333 666666666665443 55556665555555554 566
Q ss_pred HHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCH--------------------HHHHHHHHHHHhcC-----CCCCHHHH
Q 038622 424 ASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRT--------------------TEAMRLFREMMEKA-----DPPDALTY 478 (587)
Q Consensus 424 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~~-----~~~~~~~~ 478 (587)
+++.++++....+. +..+|+.+...+.+.|+. .+...+...+...+ ..+....+
T Consensus 227 ELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al 305 (349)
T 3q7a_A 227 ELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLAL 305 (349)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHH
Confidence 77777666665443 556666666666655543 22222222222221 13566677
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 038622 479 KHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAE 519 (587)
Q Consensus 479 ~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 519 (587)
..++..+...|+ .++|.+.++.+.+. .+| ....|...++
T Consensus 306 ~~l~d~~~~~~~-~~~a~~~~~~l~~~-~dpir~~yw~~~~~ 345 (349)
T 3q7a_A 306 EYLADSFIEQNR-VDDAAKVFEKLSSE-YDQMRAGYWEFRRR 345 (349)
T ss_dssp HHHHHHHHHTTC-HHHHHHHHHHHHHT-TCGGGHHHHHHHHH
T ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHhh-hChHHHHHHHHHHH
Confidence 777888888777 88888888887753 466 5555554443
No 136
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.04 E-value=2.7e-09 Score=92.69 Aligned_cols=190 Identities=11% Similarity=-0.065 Sum_probs=134.6
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHhhHHHH-------HHHHHhcCCHHHHHHHHHHHHHCCCCCC---------------
Q 038622 347 KSRRVEDAAQLMDQMIMEGLKPDKFTYNSL-------LTYYCRAGDIKRAADIVQNMTSNGCEPD--------------- 404 (587)
Q Consensus 347 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------------- 404 (587)
..++...|.+.|.++..... -....|..+ ...+...++..+++..+...+. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP-~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDE-SACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhCh-hhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 46777777777777777421 133455555 3444444444455554544443 2221
Q ss_pred -------cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--H
Q 038622 405 -------IVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPD--A 475 (587)
Q Consensus 405 -------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~ 475 (587)
......++.++...|++++|.+.|+.+...+ |+......++..+.+.+++++|+..|+...... .|. .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~ 171 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG 171 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence 1233456778889999999999998887743 333377778888999999999999998776531 121 2
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCC
Q 038622 476 LTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP--EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKF 543 (587)
Q Consensus 476 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 543 (587)
..+..++.++...|+ +++|+..|+++......| .+.....++.++.+.|+.++|...|+++...+|.
T Consensus 172 ~a~~~LG~al~~LG~-~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 172 AAGVAHGVAAANLAL-FTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHHTTC-HHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHCCC-HHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 356778888999999 999999999998643325 3568889999999999999999999999999997
No 137
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.04 E-value=6.6e-10 Score=85.82 Aligned_cols=104 Identities=13% Similarity=0.045 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCC--------
Q 038622 475 ALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSD-------- 545 (587)
Q Consensus 475 ~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------- 545 (587)
...+..++..+...|+ +++|+..|+++++. .| ++.++..++.+|.+.|++++|+..++++++..|...
T Consensus 8 A~a~~~lG~~~~~~~~-~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKD-FEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence 3456788999999999 99999999999984 56 789999999999999999999999999999887653
Q ss_pred chhhhhhhHHHHHHHHHHHHhcchhhhccCchhhhh
Q 038622 546 RETSMVRGFLKIRKFQDALATFGDILDSRMPRKTFR 581 (587)
Q Consensus 546 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 581 (587)
.+..++.++...|++++|+..|++++...+.|+.+.
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~~ 120 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVK 120 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCHHHHH
Confidence 245677778889999999999999999887776654
No 138
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.04 E-value=1.8e-08 Score=86.25 Aligned_cols=129 Identities=10% Similarity=-0.031 Sum_probs=111.6
Q ss_pred hhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 038622 21 STFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGF 100 (587)
Q Consensus 21 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 100 (587)
..+..+...+...|++++|+..|+.+. ++++.++..++..+...|++++|+..++++...+ +.+...+..++.++
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 345677888999999999999999886 5688899999999999999999999999999886 66778899999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCh----------------hhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 038622 101 CKEGRIEDALSFIQEMVSEGFNPDQ----------------FTYNTLVNGLCKVGHVKQALEVMDMMLQEG 155 (587)
Q Consensus 101 ~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 155 (587)
...|++++|+..|+++++.. +.+. .++..++.++...|++++|.+.|+.+.+..
T Consensus 82 ~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 99999999999999998863 2222 678888899999999999999999998863
No 139
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.04 E-value=8.5e-09 Score=84.23 Aligned_cols=130 Identities=14% Similarity=-0.027 Sum_probs=106.2
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038622 406 VTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGL 485 (587)
Q Consensus 406 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 485 (587)
..+..++..+...|++++|...++++....+. +...+..++.++...|++++|+..++++++.. +.+...+..++..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 45677788888899999999999988886433 57788899999999999999999999999874 66778888888889
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCCC-CHHHH--HHHHHHHHccCCHhHHHHHHHHHHhc
Q 038622 486 CNGGGPIGEAVDFVIEMLERGFLP-EFSSF--YMLAEGLVSLGKEETLVELIDMVMDK 540 (587)
Q Consensus 486 ~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~ 540 (587)
...|+ +++|...++++++. .| +...+ ..++..+...|++++|+..+++....
T Consensus 92 ~~~~~-~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 92 MALGK-FRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHTTC-HHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcc-HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 99999 99999999999984 35 56666 44455588889999999999877543
No 140
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.03 E-value=4e-10 Score=97.84 Aligned_cols=188 Identities=8% Similarity=-0.131 Sum_probs=146.1
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCcchHHHH-------HHHHHhcCChHHHHHHHHHHHHcCCCCC---------------
Q 038622 382 RAGDIKRAADIVQNMTSNGCEPDIVTYGTL-------IGGLCKAGRVEVASKLLRSIQMKGIVLT--------------- 439 (587)
Q Consensus 382 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------- 439 (587)
..++...|.+.|.++...++. ....|..+ ...+...++..+++..+++.... .|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCccccc
Confidence 579999999999999986544 56777777 56666666667777766666552 221
Q ss_pred -------hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC--C
Q 038622 440 -------PQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP--E 510 (587)
Q Consensus 440 -------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p--~ 510 (587)
......++..+...|++++|.++|..+... .|+......++..+.+.++ +++|+..++++.... .| .
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r-~~dA~~~l~~a~~~~-d~~~~ 170 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAER-WTDVIDQVKSAGKWP-DKFLA 170 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTC-HHHHHHHHTTGGGCS-CHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCC-HHHHHHHHHHhhccC-CcccH
Confidence 133455778899999999999999998875 3444455566667889999 999999999776521 22 1
Q ss_pred HHHHHHHHHHHHccCCHhHHHHHHHHHHhcC--CC--CCchhhhhhhHHHHHHHHHHHHhcchhhhccCc
Q 038622 511 FSSFYMLAEGLVSLGKEETLVELIDMVMDKA--KF--SDRETSMVRGFLKIRKFQDALATFGDILDSRMP 576 (587)
Q Consensus 511 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 576 (587)
..++..++.++...|++++|+..|+++...+ |. .+.....+.++.+.|+.++|...|+++....|.
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 3578999999999999999999999998544 22 135788899999999999999999999998876
No 141
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.03 E-value=9.3e-09 Score=92.98 Aligned_cols=167 Identities=10% Similarity=0.003 Sum_probs=128.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-----HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CCC--HH
Q 038622 407 TYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTP-----QAYNPVIQALFRRKRTTEAMRLFREMMEKAD---PPD--AL 476 (587)
Q Consensus 407 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~--~~ 476 (587)
.+...+..+...|++++|.+.+++..+....... ..+..++..+...|++++|+..++++++... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4556677888999999999999998875332111 2345577778889999999999999987421 122 44
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCCC-C----HHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC------
Q 038622 477 TYKHVFRGLCNGGGPIGEAVDFVIEMLER-GFLP-E----FSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS------ 544 (587)
Q Consensus 477 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~-~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------ 544 (587)
.+..++..+...|+ +++|+.+++++++. ...| + ..++..++.+|...|++++|+..++++++..+..
T Consensus 157 ~~~~lg~~y~~~~~-~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 157 IENAIANIYAENGY-LKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 77888999999999 99999999999831 0122 2 2588899999999999999999999998765431
Q ss_pred -CchhhhhhhHHHHHHHHHH-HHhcchhhhcc
Q 038622 545 -DRETSMVRGFLKIRKFQDA-LATFGDILDSR 574 (587)
Q Consensus 545 -~~~~~~~~~~~~~~~~~~A-~~~~~~~~~~~ 574 (587)
..+..++.+|...|++++| ...|++++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 2357788889999999999 77788877654
No 142
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.02 E-value=4.6e-09 Score=81.22 Aligned_cols=98 Identities=18% Similarity=0.237 Sum_probs=85.8
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 038622 440 PQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLA 518 (587)
Q Consensus 440 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 518 (587)
...+...+..+...|++++|+..|+++++.. |.+...+..++.++...|+ +++|+..++++++. .| ++.++..++
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~-~~~A~~~~~~al~~--~p~~~~~~~~lg 79 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMS-FPEAIADCNKAIEK--DPNFVRAYIRKA 79 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcC-HHHHHHHHHHHHHh--CCCcHHHHHHHH
Confidence 4567788888999999999999999999875 6678888888989999998 99999999999984 46 688899999
Q ss_pred HHHHccCCHhHHHHHHHHHHhcC
Q 038622 519 EGLVSLGKEETLVELIDMVMDKA 541 (587)
Q Consensus 519 ~~~~~~g~~~~A~~~~~~~~~~~ 541 (587)
.++...|++++|+..++++++..
T Consensus 80 ~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 80 TAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHhC
Confidence 99999999999999999999888
No 143
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.01 E-value=5.3e-10 Score=94.58 Aligned_cols=153 Identities=12% Similarity=0.069 Sum_probs=100.8
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH----------------HHHH
Q 038622 416 CKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDA----------------LTYK 479 (587)
Q Consensus 416 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~ 479 (587)
...|+++++.+.++......+. ....+..++..+...|++++|+..|.++++.. +.+. ..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 92 (198)
T 2fbn_A 15 ENLYFQGAKKSIYDYTDEEKVQ-SAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNL 92 (198)
T ss_dssp -------CCCSGGGCCHHHHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhccccCchhhCCHHHHHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHH
Confidence 3445555555555432221111 23456677777888888888888888888752 2222 6677
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCC-chhhhhhhHHHH
Q 038622 480 HVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSD-RETSMVRGFLKI 557 (587)
Q Consensus 480 ~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 557 (587)
.++.++...|+ +++|+..++++++. .| +..++..++.+|...|++++|+..++++++..|... .+..+..++...
T Consensus 93 ~la~~~~~~~~-~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 169 (198)
T 2fbn_A 93 NLATCYNKNKD-YPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL 169 (198)
T ss_dssp HHHHHHHHTTC-HHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-HHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 78888888888 99999999999984 45 788889999999999999999999999999988763 467777788888
Q ss_pred HHHHHHH-Hhcchhhhc
Q 038622 558 RKFQDAL-ATFGDILDS 573 (587)
Q Consensus 558 ~~~~~A~-~~~~~~~~~ 573 (587)
++..++. ..|+++...
T Consensus 170 ~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 170 KEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHC------------
T ss_pred HHHHHHHHHHHHHHhcc
Confidence 8888777 555655543
No 144
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.01 E-value=1.1e-08 Score=83.40 Aligned_cols=104 Identities=12% Similarity=0.085 Sum_probs=91.2
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHH
Q 038622 439 TPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYML 517 (587)
Q Consensus 439 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l 517 (587)
+...+..++..+...|++++|+..|+++++.. +.+...+..++.++...|+ +++|+..++++++. .| +..++..+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~--~p~~~~~~~~l 85 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQ-HEKAAEDAELATVV--DPKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 34678888999999999999999999999875 6678888889999999999 99999999999984 46 68899999
Q ss_pred HHHHHccCCHhHHHHHHHHHHhcCCCCCc
Q 038622 518 AEGLVSLGKEETLVELIDMVMDKAKFSDR 546 (587)
Q Consensus 518 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 546 (587)
+.+|...|++++|+..++++++..|.+..
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCchH
Confidence 99999999999999999999999988744
No 145
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.01 E-value=2.3e-07 Score=83.82 Aligned_cols=164 Identities=12% Similarity=0.031 Sum_probs=117.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHh----hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----cchHHH
Q 038622 341 LIDGLCKSRRVEDAAQLMDQMIMEGL-KPDKF----TYNSLLTYYCRAGDIKRAADIVQNMTSNGCE-PD----IVTYGT 410 (587)
Q Consensus 341 l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~----~~~~~~ 410 (587)
.+..+...|++++|...++++..... .|+.. .+..++..+...+++++|+..++++...... ++ ..++..
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35567778888888888888876421 12211 2334666677778889999999888874222 12 125788
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc-----CCCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCC-HHHHH
Q 038622 411 LIGGLCKAGRVEVASKLLRSIQMK-----GIVL-TPQAYNPVIQALFRRKRTTEAMRLFREMMEK----ADPPD-ALTYK 479 (587)
Q Consensus 411 l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~ 479 (587)
++.+|...|++++|..+++++.+. +..+ ...++..++.+|...|++++|+..++++++. +..+. ...+.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888899999999999999888742 1111 1247788999999999999999999988863 11222 56778
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHH
Q 038622 480 HVFRGLCNGGGPIGEAVDFVIEMLE 504 (587)
Q Consensus 480 ~l~~~~~~~~~~~~~A~~~~~~~~~ 504 (587)
.++.++...|+++++|.+.++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 8888888899536999999999875
No 146
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.00 E-value=5.2e-09 Score=81.50 Aligned_cols=116 Identities=14% Similarity=0.141 Sum_probs=78.7
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 038622 440 PQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLA 518 (587)
Q Consensus 440 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 518 (587)
...+..++..+...|++++|+..+++++... +.+...+..++..+...|+ +++|+..++++++. .| ++..+..++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~--~~~~~~~~~~~~ 87 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGN-YAGAVQDCERAICI--DPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhc-hHHHHHHHHHHHhc--CccCHHHHHHHH
Confidence 3456667777777777777777777777653 4556666677777777777 77777777777763 34 566777777
Q ss_pred HHHHccCCHhHHHHHHHHHHhcCCCCC-chhhhhhhHHHHHH
Q 038622 519 EGLVSLGKEETLVELIDMVMDKAKFSD-RETSMVRGFLKIRK 559 (587)
Q Consensus 519 ~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 559 (587)
.++...|++++|...++++++..|... .+..++.++...|+
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 777777777777777777777776542 34555555555443
No 147
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.00 E-value=7.4e-07 Score=79.91 Aligned_cols=196 Identities=8% Similarity=-0.033 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCC-HHHHHHH
Q 038622 316 IEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSR--RVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGD-IKRAADI 392 (587)
Q Consensus 316 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~ 392 (587)
+++++..++.+...+ |.+..+|+.-..++...+ ++++++.++++++.... -+...|+.-..+....|. +++++..
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 345555555555443 445555555555554444 25556666666655422 244455554444555555 3556666
Q ss_pred HHHHHHCCCCCCcchHHHHHHHHHhc--------------CChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc-----
Q 038622 393 VQNMTSNGCEPDIVTYGTLIGGLCKA--------------GRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRR----- 453 (587)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 453 (587)
+..+++.++. |...|.....++... +.++++++.+..+....+. +..+|+.+...+...
T Consensus 168 ~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccc
Confidence 6665554433 444454444444333 3467778888887776444 566776665555554
Q ss_pred ------CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH---HHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHH
Q 038622 454 ------KRTTEAMRLFREMMEKADPPDALTYKHVFRG---LCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAE 519 (587)
Q Consensus 454 ------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~ 519 (587)
+.++++++.+.++++.. |.+...+..++.. ....|. .++....+.++++ ++| ...-|..+..
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~-pd~~w~l~~~~~~~~~~~~~~~-~~~~~~~l~~l~~--~Dp~r~~~y~d~~~ 317 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELE-PENKWCLLTIILLMRALDPLLY-EKETLQYFSTLKA--VDPMRAAYLDDLRS 317 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCTTTT-HHHHHHHHHHHHH--HCGGGHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhC-cccchHHHHHHHHHHhhccccc-HHHHHHHHHHHHH--hCcchhhHHHHHHH
Confidence 45789999999999863 4443333333221 123455 8899999999998 668 5555555444
No 148
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.00 E-value=1.2e-08 Score=78.66 Aligned_cols=102 Identities=16% Similarity=0.291 Sum_probs=72.8
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038622 440 PQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAE 519 (587)
Q Consensus 440 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 519 (587)
...+..++..+...|++++|.+.++++++.. +.+...+..++..+...|+ +++|+..++++++.. +.+...+..++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~-~~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGD-YDEAIEYYQKALELD-PNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHhC-CccHHHHHHHHH
Confidence 4566677777777777777777777777653 4556666677777777777 777777777777642 236667777777
Q ss_pred HHHccCCHhHHHHHHHHHHhcCCCC
Q 038622 520 GLVSLGKEETLVELIDMVMDKAKFS 544 (587)
Q Consensus 520 ~~~~~g~~~~A~~~~~~~~~~~~~~ 544 (587)
++...|++++|...++++++..|..
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~ 110 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELDPNN 110 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCc
Confidence 7777777777777777777777655
No 149
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.98 E-value=3.6e-09 Score=80.79 Aligned_cols=97 Identities=10% Similarity=0.005 Sum_probs=51.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 038622 443 YNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGL 521 (587)
Q Consensus 443 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~ 521 (587)
+..++..+...|++++|+..|+++++.. |.+...+..++.++...|+ +++|+..++++++. .| ++.++..++.+|
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~l--~P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEK-DGLAIIALNHARML--DPKDIAVHAALAVSH 95 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 4445555555555555555555555543 4455555555555555555 55555555555552 34 455555555555
Q ss_pred HccCCHhHHHHHHHHHHhcCCC
Q 038622 522 VSLGKEETLVELIDMVMDKAKF 543 (587)
Q Consensus 522 ~~~g~~~~A~~~~~~~~~~~~~ 543 (587)
...|++++|+..++++++.+|.
T Consensus 96 ~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC----
T ss_pred HHcCCHHHHHHHHHHHHHhCcC
Confidence 5555555555555555555553
No 150
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.98 E-value=9.5e-09 Score=94.58 Aligned_cols=96 Identities=8% Similarity=-0.021 Sum_probs=82.9
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 038622 440 PQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLA 518 (587)
Q Consensus 440 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 518 (587)
...|..++.++...|++++|+..++++++.. |.+...+..++.++...|+ +++|+..|+++++. .| +..++..++
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~l--~P~~~~a~~~l~ 271 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVND-FELARADFQKVLQL--YPNNKAAKTQLA 271 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHH--CCCCHHHHHHHH
Confidence 4688899999999999999999999999975 6778888899999999999 99999999999984 56 788899999
Q ss_pred HHHHccCCHhHH-HHHHHHHHh
Q 038622 519 EGLVSLGKEETL-VELIDMVMD 539 (587)
Q Consensus 519 ~~~~~~g~~~~A-~~~~~~~~~ 539 (587)
.++...|++++| ...++++..
T Consensus 272 ~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 272 VCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988 456666654
No 151
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.98 E-value=4.3e-09 Score=80.32 Aligned_cols=97 Identities=10% Similarity=-0.032 Sum_probs=77.3
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC-CchhhhhhhHH
Q 038622 478 YKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS-DRETSMVRGFL 555 (587)
Q Consensus 478 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~ 555 (587)
+..++..+...|+ +++|+..++++++. .| +..++..++.++...|++++|+..++++++.+|.. +.+..++.+|.
T Consensus 20 ~~~~g~~~~~~g~-~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLAN-LAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTC-HHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC-HHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4556667788888 99999999998884 46 78888889999999999999999999999988876 45788888888
Q ss_pred HHHHHHHHHHhcchhhhccCch
Q 038622 556 KIRKFQDALATFGDILDSRMPR 577 (587)
Q Consensus 556 ~~~~~~~A~~~~~~~~~~~~~~ 577 (587)
..|++++|+..|+++++..+..
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-----
T ss_pred HcCCHHHHHHHHHHHHHhCcCC
Confidence 9999999999999888876544
No 152
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.98 E-value=1.3e-09 Score=90.37 Aligned_cols=126 Identities=8% Similarity=0.087 Sum_probs=107.4
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHccCCH-
Q 038622 450 LFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEG-LVSLGKE- 527 (587)
Q Consensus 450 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~- 527 (587)
+...|++++|+..++++++.. |.+...+..++..+...|+ +++|+..++++++.+ +.++..+..++.+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQND-YSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcc
Confidence 345789999999999999875 6788889999999999999 999999999999843 3378899999999 8899999
Q ss_pred -hHHHHHHHHHHhcCCCC-CchhhhhhhHHHHHHHHHHHHhcchhhhccCchh
Q 038622 528 -ETLVELIDMVMDKAKFS-DRETSMVRGFLKIRKFQDALATFGDILDSRMPRK 578 (587)
Q Consensus 528 -~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 578 (587)
++|+..++++++..|.. ..+..++.+|...|++++|+..|+++++..+...
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence 99999999999999986 4578899999999999999999999999886653
No 153
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.97 E-value=8.9e-10 Score=87.27 Aligned_cols=113 Identities=10% Similarity=-0.062 Sum_probs=93.9
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhc
Q 038622 462 LFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDK 540 (587)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 540 (587)
.|++++..+ |.+...+..++..+...|+ +++|+..++++++. .| ++.++..++.+|...|++++|+..++++++.
T Consensus 6 ~l~~al~~~-p~~~~~~~~~a~~~~~~g~-~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 81 (142)
T 2xcb_A 6 TLAMLRGLS-EDTLEQLYALGFNQYQAGK-WDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALM 81 (142)
T ss_dssp ---CCTTCC-HHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHcCC-HHHHHHHHHHHHHHHHHcc-HHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 344444432 3345566778888999999 99999999999984 46 8999999999999999999999999999999
Q ss_pred CCCCC-chhhhhhhHHHHHHHHHHHHhcchhhhccCchh
Q 038622 541 AKFSD-RETSMVRGFLKIRKFQDALATFGDILDSRMPRK 578 (587)
Q Consensus 541 ~~~~~-~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 578 (587)
+|.+. .+..++.+|...|++++|+..|+++++..+...
T Consensus 82 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 120 (142)
T 2xcb_A 82 DINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQP 120 (142)
T ss_dssp CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCG
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence 99874 578999999999999999999999998876443
No 154
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.97 E-value=1.3e-08 Score=91.08 Aligned_cols=164 Identities=7% Similarity=-0.055 Sum_probs=118.2
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038622 404 DIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFR 483 (587)
Q Consensus 404 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 483 (587)
+...+..++..+...|++++|...++++....+. +...+..++.++...|++++|+..++++++.+ |.+...+..++.
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4556778889999999999999999999986443 67888999999999999999999999999874 667788888999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCc-hhhhhhhHHHHHHHH
Q 038622 484 GLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDR-ETSMVRGFLKIRKFQ 561 (587)
Q Consensus 484 ~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 561 (587)
++...|+ +++|+..++++++. .| +...+...++... +..++..+........+.... ...+. .+..|+++
T Consensus 81 ~~~~~g~-~~~A~~~~~~al~l--~p~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~l~--~l~~~~~~ 152 (281)
T 2c2l_A 81 CQLEMES-YDEAIANLQRAYSL--AKEQRLNFGDDIPSAL---RIAKKKRWNSIEERRIHQESELHSYLT--RLIAAERE 152 (281)
T ss_dssp HHHHTTC-HHHHHHHHHHHHHH--HHHTTCCCCSHHHHHH---HHHHHHHHHHHHHTCCCCCCHHHHHHH--HHHHHHHH
T ss_pred HHHHcCC-HHHHHHHHHHHHHh--CccchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHH--HHHHHHHH
Confidence 9999999 99999999999873 34 2211212222222 122333333333334444333 33332 33479999
Q ss_pred HHHHhcchhhhccCch
Q 038622 562 DALATFGDILDSRMPR 577 (587)
Q Consensus 562 ~A~~~~~~~~~~~~~~ 577 (587)
+|++.++++++..+..
T Consensus 153 ~A~~~~~~al~~~p~~ 168 (281)
T 2c2l_A 153 RELEECQRNHEGHEDD 168 (281)
T ss_dssp HHHTTTSGGGTTTSCH
T ss_pred HHHHHHHhhhccccch
Confidence 9999999999887644
No 155
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.97 E-value=1.2e-08 Score=79.62 Aligned_cols=118 Identities=10% Similarity=-0.042 Sum_probs=94.8
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 038622 404 DIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFR 483 (587)
Q Consensus 404 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 483 (587)
+...+..++..+...|++++|...++++.+..+. +...+..++.++...|++++|+..++++++.. +.+...+..++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 3456777888888888999999888888876433 56788888888888999999999999988864 667778888888
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCC
Q 038622 484 GLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGK 526 (587)
Q Consensus 484 ~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 526 (587)
.+...|+ +++|++.++++++. .| +...+..++.++...|+
T Consensus 93 ~~~~~~~-~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 93 ALEAMKD-YTKAMDVYQKALDL--DSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHTTC-HHHHHHHHHHHHHH--CGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHhh-HHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhcC
Confidence 8888888 99999999998874 45 56777888888877664
No 156
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.96 E-value=6.3e-09 Score=88.36 Aligned_cols=160 Identities=16% Similarity=-0.057 Sum_probs=96.1
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC-CChHhHHHHHHHHHhcCCH
Q 038622 382 RAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMK----GIV-LTPQAYNPVIQALFRRKRT 456 (587)
Q Consensus 382 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~ 456 (587)
..|++++|...++.+... .......+..++..+...|++++|...++++... +.. .....+..++..+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 456666666644443321 2223455666666677777777777777666552 111 1224566777777777888
Q ss_pred HHHHHHHHHHHhc--CCCCC----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHccC
Q 038622 457 TEAMRLFREMMEK--ADPPD----ALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGF-LPE----FSSFYMLAEGLVSLG 525 (587)
Q Consensus 457 ~~A~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g 525 (587)
++|...++++++. ..+.+ ...+..++..+...|+ +++|...++++++..- .++ ..++..++.++...|
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGD-LAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 8887777777663 11112 2345566667777777 8888888877764210 112 234567788888888
Q ss_pred CHhHHHHHHHHHHhcCCC
Q 038622 526 KEETLVELIDMVMDKAKF 543 (587)
Q Consensus 526 ~~~~A~~~~~~~~~~~~~ 543 (587)
++++|...++++++....
T Consensus 162 ~~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 162 NLLEAQQHWLRARDIFAE 179 (203)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 888888888887765543
No 157
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.96 E-value=1.9e-08 Score=78.24 Aligned_cols=118 Identities=14% Similarity=-0.008 Sum_probs=94.3
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 038622 405 IVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRG 484 (587)
Q Consensus 405 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 484 (587)
...+..++..+...|++++|...++++....+. +...+..++.++...|++++|+..++++++.. +.+...+..++..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 456677778888888888888888888876433 56778888888888899999999998888864 5667778888888
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCH
Q 038622 485 LCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKE 527 (587)
Q Consensus 485 ~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 527 (587)
+...|+ +++|...++++++. .| +...+..++.++...|++
T Consensus 90 ~~~~~~-~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNK-HVEAVAYYKKALEL--DPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTC-HHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCC-HHHHHHHHHHHHhc--CccchHHHHHHHHHHHHHhcC
Confidence 888888 99999999998874 45 677888888888887765
No 158
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.95 E-value=2.8e-08 Score=76.47 Aligned_cols=116 Identities=16% Similarity=0.207 Sum_probs=88.8
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 038622 405 IVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRG 484 (587)
Q Consensus 405 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 484 (587)
...+..++..+...|++++|.++++++....+. +...+..++..+...|++++|+..++++.+.. +.+...+..++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 456677777888888888888888888775432 56677888888888888888888888888764 5667777788888
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccC
Q 038622 485 LCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLG 525 (587)
Q Consensus 485 ~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 525 (587)
+...|+ +++|...++++++. .| ++..+..++.++...|
T Consensus 87 ~~~~~~-~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGD-YDEAIEYYQKALEL--DPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcC-HHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhcc
Confidence 888888 88888888888874 35 6777777777776544
No 159
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.94 E-value=1.8e-08 Score=79.16 Aligned_cols=101 Identities=14% Similarity=0.107 Sum_probs=90.3
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHH
Q 038622 439 TPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYML 517 (587)
Q Consensus 439 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l 517 (587)
+...+..++..+...|++++|+..|++++... |.+...+..++.++...|+ +++|+..++++++. .| ++.++..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~al~~--~p~~~~~~~~l 83 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQ-PEQALADCRRALEL--DGQSVKAHFFL 83 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHh--CchhHHHHHHH
Confidence 56788899999999999999999999999875 6678888889999999999 99999999999984 45 78899999
Q ss_pred HHHHHccCCHhHHHHHHHHHHhcCCC
Q 038622 518 AEGLVSLGKEETLVELIDMVMDKAKF 543 (587)
Q Consensus 518 ~~~~~~~g~~~~A~~~~~~~~~~~~~ 543 (587)
+.++...|++++|+..++++++..|.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 99999999999999999999988876
No 160
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.91 E-value=5e-09 Score=89.01 Aligned_cols=159 Identities=13% Similarity=0.008 Sum_probs=120.6
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CC-CCCHHHHHHHHHHHHhCCC
Q 038622 416 CKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEK----AD-PPDALTYKHVFRGLCNGGG 490 (587)
Q Consensus 416 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~ 490 (587)
...|++++|.+.++.+... +......+..++..+...|++++|...++++++. +. +.....+..++..+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4679999999966655442 3335678899999999999999999999999872 11 2234567788888999999
Q ss_pred CHHHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC-C------chhhhhhhHHHH
Q 038622 491 PIGEAVDFVIEMLER----GFLP--EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS-D------RETSMVRGFLKI 557 (587)
Q Consensus 491 ~~~~A~~~~~~~~~~----~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~------~~~~~~~~~~~~ 557 (587)
+++|...++++++. +-.| ...++..++.++...|++++|...++++++..+.. + ....++.++...
T Consensus 82 -~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (203)
T 3gw4_A 82 -WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQE 160 (203)
T ss_dssp -HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHC
Confidence 99999999998863 1012 24567889999999999999999999998654322 1 136778889999
Q ss_pred HHHHHHHHhcchhhhccCc
Q 038622 558 RKFQDALATFGDILDSRMP 576 (587)
Q Consensus 558 ~~~~~A~~~~~~~~~~~~~ 576 (587)
|++++|...++++++....
T Consensus 161 g~~~~A~~~~~~al~~~~~ 179 (203)
T 3gw4_A 161 KNLLEAQQHWLRARDIFAE 179 (203)
T ss_dssp TCHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHH
Confidence 9999999999998876543
No 161
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.91 E-value=2.8e-08 Score=74.73 Aligned_cols=103 Identities=17% Similarity=0.108 Sum_probs=83.9
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC--CHHHHHH
Q 038622 439 TPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP--EFSSFYM 516 (587)
Q Consensus 439 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p--~~~~~~~ 516 (587)
+...+..++..+...|++++|+..++++++.. +.+...+..++..+...|+ +++|+..++++++.. +. +..++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~a~~~~-~~~~~~~~~~~ 81 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLER-YEEAVDCYNYVINVI-EDEYNKDVWAA 81 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTS-CCTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhC-cccchHHHHHH
Confidence 44667778888888888888888888888864 5667777888888888888 899999999888743 33 5778888
Q ss_pred HHHHHHcc-CCHhHHHHHHHHHHhcCCCC
Q 038622 517 LAEGLVSL-GKEETLVELIDMVMDKAKFS 544 (587)
Q Consensus 517 l~~~~~~~-g~~~~A~~~~~~~~~~~~~~ 544 (587)
++.++... |++++|++.++++++..|.+
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 88999999 99999999999988888765
No 162
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.90 E-value=1.7e-09 Score=91.44 Aligned_cols=130 Identities=9% Similarity=-0.069 Sum_probs=88.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC---------------ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 038622 407 TYGTLIGGLCKAGRVEVASKLLRSIQMKGIVL---------------TPQAYNPVIQALFRRKRTTEAMRLFREMMEKAD 471 (587)
Q Consensus 407 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 471 (587)
.+..++..+...|++++|...|+++....+.. ....+..++.++...|++++|+..++++++..
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~- 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID- 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 34444555555555555555555555432110 12677888999999999999999999999874
Q ss_pred CCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHH-HHHHHHHhc
Q 038622 472 PPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLV-ELIDMVMDK 540 (587)
Q Consensus 472 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~ 540 (587)
+.+...+..++.++...|+ +++|+..++++++. .| +..++..++.++...|+.+++. ..++.+...
T Consensus 119 p~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGF-LEEAKENLYKAASL--NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred cccHHHHHHHHHHHHHccc-HHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6677888888888999999 99999999999984 46 7888888888888888887777 555555443
No 163
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.89 E-value=3.4e-08 Score=76.21 Aligned_cols=96 Identities=13% Similarity=-0.015 Sum_probs=71.8
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038622 406 VTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGL 485 (587)
Q Consensus 406 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 485 (587)
..+..++..+...|++++|+..|+++.+..+. +...|..++.++...|++++|+..++++++.+ |.+...+..++.++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 45666677777778888888888777775433 56777778888888888888888888887764 55667777777777
Q ss_pred HhCCCCHHHHHHHHHHHHH
Q 038622 486 CNGGGPIGEAVDFVIEMLE 504 (587)
Q Consensus 486 ~~~~~~~~~A~~~~~~~~~ 504 (587)
...|+ +++|+..++++++
T Consensus 83 ~~~~~-~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKE-YASALETLDAART 100 (126)
T ss_dssp HHTTC-HHHHHHHHHHHHH
T ss_pred HHHhC-HHHHHHHHHHHHH
Confidence 77787 8888888888776
No 164
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.89 E-value=1.9e-08 Score=78.22 Aligned_cols=108 Identities=8% Similarity=0.126 Sum_probs=82.4
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-C-------H
Q 038622 440 PQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-E-------F 511 (587)
Q Consensus 440 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~-------~ 511 (587)
...+..++..+...|++++|+..|+++++.. +.+...+..++..+...|+ +++|...++++++.. | + .
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~-~~~A~~~~~~~~~~~--~~~~~~~~~~~ 79 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGD-YNKCRELCEKAIEVG--RENREDYRQIA 79 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHH--HHSTTCHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhcc-HHHHHHHHHHHHhhc--cccchhHHHHH
Confidence 3566777888888888888888888888764 5667777778888888888 888888888888632 3 2 6
Q ss_pred HHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCchhhhh
Q 038622 512 SSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDRETSMV 551 (587)
Q Consensus 512 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 551 (587)
.++..++.++...|++++|...++++++..|.++....+.
T Consensus 80 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~ 119 (131)
T 1elr_A 80 KAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQ 119 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 7788888888888888899888888888877543344433
No 165
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.88 E-value=4.8e-08 Score=74.24 Aligned_cols=102 Identities=11% Similarity=0.077 Sum_probs=81.1
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 038622 440 PQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLA 518 (587)
Q Consensus 440 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 518 (587)
...+..++..+...|++++|...+++++... |.+...+..++..+...|+ +++|...++++++. .| ++..+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~--~~~~~~~~~~~a 79 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGD-YQKAYEDGCKTVDL--KPDWGKGYSRKA 79 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHh--CcccHHHHHHHH
Confidence 4567777888888888888888888888764 5567777778888888888 88888888888874 34 677888888
Q ss_pred HHHHccCCHhHHHHHHHHHHhcCCCCC
Q 038622 519 EGLVSLGKEETLVELIDMVMDKAKFSD 545 (587)
Q Consensus 519 ~~~~~~g~~~~A~~~~~~~~~~~~~~~ 545 (587)
.++...|++++|...++++++..|.+.
T Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~~~~~~ 106 (118)
T 1elw_A 80 AALEFLNRFEEAKRTYEEGLKHEANNP 106 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHHHHhhHHHHHHHHHHHHHcCCCCH
Confidence 888888888888888888888887653
No 166
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.87 E-value=1.3e-08 Score=79.39 Aligned_cols=103 Identities=17% Similarity=0.071 Sum_probs=84.3
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------CH-----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---
Q 038622 441 QAYNPVIQALFRRKRTTEAMRLFREMMEKADPP-------DA-----LTYKHVFRGLCNGGGPIGEAVDFVIEMLER--- 505 (587)
Q Consensus 441 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~-----~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~--- 505 (587)
..+...+..+...|++++|+..|+++++.. |. +. ..|...+.++...|+ +++|+..++++++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~-p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr-~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEIS-HTMPPEEAFDHAGFDAFCHAGLAEALAGLRS-FDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-TTSCTTSCCCHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCCcchhhhhhccchHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhhhc
Confidence 455667777888888888888888888753 22 23 278888989999999 99999999999983
Q ss_pred --CCCC-CHHHH----HHHHHHHHccCCHhHHHHHHHHHHhcCCCCC
Q 038622 506 --GFLP-EFSSF----YMLAEGLVSLGKEETLVELIDMVMDKAKFSD 545 (587)
Q Consensus 506 --~~~p-~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 545 (587)
.+.| +..+| ..++.++...|++++|+..|+++++..|...
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~ 136 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 136 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence 1167 57788 9999999999999999999999999998763
No 167
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.85 E-value=4.2e-09 Score=101.81 Aligned_cols=122 Identities=16% Similarity=0.212 Sum_probs=95.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 038622 443 YNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGL 521 (587)
Q Consensus 443 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~ 521 (587)
+..++..+...|++++|++.|+++++.. |.+...+..++.++...|+ +++|++.++++++. .| +..++..++.+|
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~l--~p~~~~~~~~lg~~~ 84 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTEC-YGYALGDATRAIEL--DKKYIKGYYRRAASN 84 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHS--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 4445566777889999999999998874 6667888888888888888 99999999999884 56 688888899999
Q ss_pred HccCCHhHHHHHHHHHHhcCCCCC-chhhhhhh--HHHHHHHHHHHHhcc
Q 038622 522 VSLGKEETLVELIDMVMDKAKFSD-RETSMVRG--FLKIRKFQDALATFG 568 (587)
Q Consensus 522 ~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~A~~~~~ 568 (587)
...|++++|++.++++++..|... .+..++.+ +.+.|++++|++.++
T Consensus 85 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 85 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999998888763 45566666 778899999998888
No 168
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.84 E-value=2e-08 Score=98.75 Aligned_cols=171 Identities=10% Similarity=-0.036 Sum_probs=133.3
Q ss_pred CHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC
Q 038622 385 DIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGR----------VEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRK 454 (587)
Q Consensus 385 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 454 (587)
..++|+..++.++..++. +..+|+.-..++...|+ ++++++.++++.+.+++ +..+|+.-..++...|
T Consensus 44 ~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcc
Confidence 345678888888875443 45666666666666666 88999999999887665 7788998899999988
Q ss_pred --CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcc-------
Q 038622 455 --RTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSL------- 524 (587)
Q Consensus 455 --~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~------- 524 (587)
++++++..++++++.+ +.+...|..-..++...|..++++++++.++++. .| +..+|...+.++.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~--~p~n~saW~~r~~ll~~l~~~~~~~ 198 (567)
T 1dce_A 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQPDSG 198 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--TCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHH--CCCCccHHHHHHHHHHhhccccccc
Confidence 6799999999999986 7788889888888888883389999999999874 46 788888888887764
Q ss_pred -------CCHhHHHHHHHHHHhcCCCCCc-hhhhhhhHHHHHHH
Q 038622 525 -------GKEETLVELIDMVMDKAKFSDR-ETSMVRGFLKIRKF 560 (587)
Q Consensus 525 -------g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 560 (587)
+.+++|++.+++++..+|.+.. |+.+...+.+.+..
T Consensus 199 ~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~ 242 (567)
T 1dce_A 199 PQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPH 242 (567)
T ss_dssp SCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCC
T ss_pred ccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCc
Confidence 5678999999999999998754 65555555555543
No 169
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.83 E-value=1.5e-07 Score=71.40 Aligned_cols=112 Identities=12% Similarity=-0.090 Sum_probs=78.9
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 038622 405 IVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRG 484 (587)
Q Consensus 405 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 484 (587)
...+..++..+...|++++|...++++....+. +...+..++.++...|++++|...++++++.. |.+...+..++..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 81 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA 81 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 345666677777777888888777777765332 56677777777778888888888888877764 5566677777777
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 038622 485 LCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGL 521 (587)
Q Consensus 485 ~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~ 521 (587)
+...|+ +++|.+.++++++. .| ++..+..++.+.
T Consensus 82 ~~~~~~-~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 82 LEFLNR-FEEAKRTYEEGLKH--EANNPQLKEGLQNME 116 (118)
T ss_dssp HHHTTC-HHHHHHHHHHHHTT--CTTCHHHHHHHHHHH
T ss_pred HHHHhh-HHHHHHHHHHHHHc--CCCCHHHHHHHHHhh
Confidence 777777 88888888887763 45 566666555543
No 170
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.81 E-value=3.1e-08 Score=80.44 Aligned_cols=102 Identities=19% Similarity=0.236 Sum_probs=81.4
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhc--------C---------CCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 038622 441 QAYNPVIQALFRRKRTTEAMRLFREMMEK--------A---------DPPDALTYKHVFRGLCNGGGPIGEAVDFVIEML 503 (587)
Q Consensus 441 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~ 503 (587)
..+...+..+...|++++|+..|.+++.. . .+.+...+..++.++...|+ +++|+..+++++
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~-~~~A~~~~~~al 90 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGD-LHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCc-HHHHHHHHHHHH
Confidence 45566677777777777777777777764 0 02334567788888899999 999999999999
Q ss_pred HcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCC
Q 038622 504 ERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSD 545 (587)
Q Consensus 504 ~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 545 (587)
+. .| ++.++..++.+|...|++++|+..++++++.+|.+.
T Consensus 91 ~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 91 KR--EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred hc--CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 84 46 788999999999999999999999999999998764
No 171
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.81 E-value=8.1e-08 Score=74.42 Aligned_cols=100 Identities=15% Similarity=0.124 Sum_probs=77.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-C---HHHH
Q 038622 442 AYNPVIQALFRRKRTTEAMRLFREMMEKADPPDA---LTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-E---FSSF 514 (587)
Q Consensus 442 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~---~~~~ 514 (587)
.+..++..+...|++++|+..|+++++.. |.+. ..+..++.++...|+ +++|+..++++++. .| + +.++
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~-~~~A~~~~~~~~~~--~p~~~~~~~~~ 79 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRN-FQLAEAQFRDLVSR--YPTHDKAAGGL 79 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTSTTHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHH--CCCCcccHHHH
Confidence 45567777888888888888888888753 3333 466677778888888 88888888888874 34 4 6778
Q ss_pred HHHHHHHHccCCHhHHHHHHHHHHhcCCCCC
Q 038622 515 YMLAEGLVSLGKEETLVELIDMVMDKAKFSD 545 (587)
Q Consensus 515 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 545 (587)
..++.++...|++++|+..++++++..|.++
T Consensus 80 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 110 (129)
T 2xev_A 80 LKLGLSQYGEGKNTEAQQTLQQVATQYPGSD 110 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTSH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCCh
Confidence 8888888889999999999998888888653
No 172
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.80 E-value=7.8e-08 Score=92.58 Aligned_cols=121 Identities=8% Similarity=0.018 Sum_probs=76.7
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---------------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 038622 441 QAYNPVIQALFRRKRTTEAMRLFREMMEKADPPD---------------ALTYKHVFRGLCNGGGPIGEAVDFVIEMLER 505 (587)
Q Consensus 441 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 505 (587)
..+..++..+...|++++|+..|+++++.. +.+ ...+..++.++...|+ +++|+..++++++.
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~-~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLRE-YTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHhc
Confidence 445556666666666666666666666542 222 3556666667777777 77777777777763
Q ss_pred CCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC-CchhhhhhhHHHHHHHHHHHH
Q 038622 506 GFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS-DRETSMVRGFLKIRKFQDALA 565 (587)
Q Consensus 506 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~A~~ 565 (587)
.| +..++..++.+|...|++++|+..|+++++.+|.+ ..+..+..++...|++.+|.+
T Consensus 347 --~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 347 --DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp --STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34 56677777777777777777777777777777765 345666666667776666653
No 173
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.78 E-value=2.9e-08 Score=77.97 Aligned_cols=102 Identities=15% Similarity=0.084 Sum_probs=92.9
Q ss_pred CCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC-Cchhh
Q 038622 472 PPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS-DRETS 549 (587)
Q Consensus 472 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~ 549 (587)
+.+...+..++..+...|+ +++|+..++++++. .| ++.++..++.++...|++++|+..++++++..|.. ..+..
T Consensus 6 ~~~~~~~~~~g~~~~~~~~-~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRK-YPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 82 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCc-HHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence 5567888899999999999 99999999999985 45 78999999999999999999999999999999986 45889
Q ss_pred hhhhHHHHHHHHHHHHhcchhhhccCc
Q 038622 550 MVRGFLKIRKFQDALATFGDILDSRMP 576 (587)
Q Consensus 550 ~~~~~~~~~~~~~A~~~~~~~~~~~~~ 576 (587)
++.++...|++++|+..|+++++..+.
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 999999999999999999999987755
No 174
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.78 E-value=7.4e-08 Score=89.57 Aligned_cols=121 Identities=15% Similarity=0.161 Sum_probs=96.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHh----------------cCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 038622 442 AYNPVIQALFRRKRTTEAMRLFREMME----------------KADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLER 505 (587)
Q Consensus 442 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----------------~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 505 (587)
.+..++..+...|++++|+..|+++++ .. +.+...+..++.++...|+ +++|+..++++++
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~-~~~~~~~~nla~~~~~~g~-~~~A~~~~~~al~- 301 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ-PVALSCVLNIGACKLKMSD-WQGAVDSCLEALE- 301 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGH-HHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHH-HHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHH-
Confidence 455666677777777777777777765 21 3345678888888999999 9999999999998
Q ss_pred CCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCC-chhhhhhhHHHHHHHHHHHHh
Q 038622 506 GFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSD-RETSMVRGFLKIRKFQDALAT 566 (587)
Q Consensus 506 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~A~~~ 566 (587)
+.| +..++..++.+|...|++++|+..++++++..|.+. .+..+..++...++..++.+.
T Consensus 302 -~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 302 -IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp -TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456 788999999999999999999999999999999764 467777788888888887654
No 175
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=1.7e-07 Score=74.61 Aligned_cols=102 Identities=11% Similarity=0.078 Sum_probs=81.5
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHH
Q 038622 439 TPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPD----ALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSS 513 (587)
Q Consensus 439 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~ 513 (587)
+...+..++..+...|++++|+..|+++++. .|+ ...+..++..+...|+ +++|+..++++++. .| +..+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~-~~~A~~~~~~~~~~--~~~~~~~ 101 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLED-YDKAETEASKAIEK--DGGDVKA 101 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--TSCCHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHcc-HHHHHHHHHHHHhh--CccCHHH
Confidence 4567778888888888888888888888875 344 5667777778888888 88888888888874 45 6788
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHhcCCCCC
Q 038622 514 FYMLAEGLVSLGKEETLVELIDMVMDKAKFSD 545 (587)
Q Consensus 514 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 545 (587)
+..++.++...|++++|+..++++++..|...
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 133 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPKNK 133 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 88888888888888888888888888888753
No 176
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.74 E-value=1.8e-08 Score=76.47 Aligned_cols=108 Identities=18% Similarity=0.203 Sum_probs=80.0
Q ss_pred hcCCHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHh
Q 038622 452 RRKRTTEAMRLFREMMEKA--DPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEE 528 (587)
Q Consensus 452 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~ 528 (587)
..|++++|+..|+++++.+ .|.+...+..++.++...|+ +++|+..++++++. .| ++.++..++.++...|+++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~ 78 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGE-YRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYE 78 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHH
Confidence 3578889999999998853 13445677788888889998 99999999999984 45 6888899999999999999
Q ss_pred HHHHHHHHHHhcCCCCCchhhhhhhHHHHHHHHHHHHhcchhhh
Q 038622 529 TLVELIDMVMDKAKFSDRETSMVRGFLKIRKFQDALATFGDILD 572 (587)
Q Consensus 529 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 572 (587)
+|+..++++++..|.++. ...+..|+..+.+.++
T Consensus 79 ~A~~~~~~al~~~p~~~~----------~~~~~~ai~~~~~~l~ 112 (117)
T 3k9i_A 79 QGVELLLKIIAETSDDET----------IQSYKQAILFYADKLD 112 (117)
T ss_dssp HHHHHHHHHHHHHCCCHH----------HHHTHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHhCCCcHH----------HHHHHHHHHHHHHHHH
Confidence 999999999998887632 1335556666555443
No 177
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.74 E-value=1.2e-07 Score=77.19 Aligned_cols=99 Identities=8% Similarity=-0.047 Sum_probs=64.6
Q ss_pred CHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 038622 19 DVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVH 98 (587)
Q Consensus 19 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 98 (587)
+...|..+...+.+.|++++|+..|+++++.. +.++..|..++.++...|++++|+..++++++.+ +.+...+..++.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44556666666666677777776666666654 4566666666666666666666666666666664 445566666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 038622 99 GFCKEGRIEDALSFIQEMVSE 119 (587)
Q Consensus 99 ~~~~~~~~~~a~~~~~~~~~~ 119 (587)
++...|++++|+..|+++++.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 666666666666666666654
No 178
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.73 E-value=1.8e-08 Score=78.71 Aligned_cols=99 Identities=14% Similarity=0.015 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCC-------------HHHHHHHHHHHHccCCHhHHHHHHHHHHhc--
Q 038622 476 LTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPE-------------FSSFYMLAEGLVSLGKEETLVELIDMVMDK-- 540 (587)
Q Consensus 476 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-- 540 (587)
..+...+..+...|+ +++|+..|+++++. .|+ ..+|..++.++.+.|++++|+..++++++.
T Consensus 12 ~~~~~~G~~l~~~g~-~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n 88 (159)
T 2hr2_A 12 YLALSDAQRQLVAGE-YDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 88 (159)
T ss_dssp HHHHHHHHHHHHHTC-HHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC-HHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 345667778889999 99999999999984 454 238999999999999999999999999999
Q ss_pred -----CCCC-Cch----hhhhhhHHHHHHHHHHHHhcchhhhccCch
Q 038622 541 -----AKFS-DRE----TSMVRGFLKIRKFQDALATFGDILDSRMPR 577 (587)
Q Consensus 541 -----~~~~-~~~----~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 577 (587)
+|+. ..| +..+.++...|++++|+..|+++++..|..
T Consensus 89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d 135 (159)
T 2hr2_A 89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 135 (159)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 9876 457 899999999999999999999999887544
No 179
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.72 E-value=1.1e-07 Score=73.90 Aligned_cols=113 Identities=12% Similarity=0.045 Sum_probs=74.9
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCC----HHHHH
Q 038622 406 VTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKAD--PPD----ALTYK 479 (587)
Q Consensus 406 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~~ 479 (587)
..+..++..+...|++++|...++++....+. +...+..++.++...|++++|...++++++... +++ ...+.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 34566667777777777777777777665322 456677777777777777777777777776421 112 55666
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 038622 480 HVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLV 522 (587)
Q Consensus 480 ~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 522 (587)
.++..+...|+ +++|.+.++++++. .|++.....+..+..
T Consensus 84 ~la~~~~~~~~-~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~ 123 (131)
T 1elr_A 84 RIGNSYFKEEK-YKDAIHFYNKSLAE--HRTPDVLKKCQQAEK 123 (131)
T ss_dssp HHHHHHHHTTC-HHHHHHHHHHHHHH--CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcc-HHHHHHHHHHHHHh--CCCHHHHHHHHHHHH
Confidence 67777777777 78888888777773 456666666655544
No 180
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.71 E-value=3.7e-08 Score=90.64 Aligned_cols=98 Identities=9% Similarity=0.014 Sum_probs=52.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCC-chhhhhhh-
Q 038622 477 TYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSD-RETSMVRG- 553 (587)
Q Consensus 477 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~~~- 553 (587)
.+..++.++...|+ +++|+..++++++. .| +..++..++.+|...|++++|+..++++++..|.+. .+..+..+
T Consensus 232 ~~~nla~~~~~~g~-~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~ 308 (338)
T 2if4_A 232 CHLNIAACLIKLKR-YDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALA 308 (338)
T ss_dssp HHHHHHHHHHTTTC-CHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------
T ss_pred HHHHHHHHHHHcCC-HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 56778888888888 99999999999884 45 788889999999999999999999999998888764 35555554
Q ss_pred HHHHHHHHHHHHhcchhhhccCch
Q 038622 554 FLKIRKFQDALATFGDILDSRMPR 577 (587)
Q Consensus 554 ~~~~~~~~~A~~~~~~~~~~~~~~ 577 (587)
....+....+...|+++....+..
T Consensus 309 ~~~~~~~~~a~~~~~~~l~~~p~~ 332 (338)
T 2if4_A 309 EQEKALYQKQKEMYKGIFKGKDEG 332 (338)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCC
Confidence 345667788888888888766543
No 181
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.71 E-value=4.9e-07 Score=71.88 Aligned_cols=112 Identities=13% Similarity=-0.074 Sum_probs=75.7
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC----hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 038622 405 IVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLT----PQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKH 480 (587)
Q Consensus 405 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 480 (587)
...+..++..+...|++++|...|+++.+. .|+ ...+..++.++...|++++|+..++++++.. +.+...+..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 104 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYR 104 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHH
Confidence 445566666777777777777777777664 333 4566777777777777777777777777753 455666667
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHH
Q 038622 481 VFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLV 522 (587)
Q Consensus 481 l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 522 (587)
++.++...|+ +++|...++++++. .| +..++..+..+..
T Consensus 105 ~a~~~~~~~~-~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 105 RSQALEKLGR-LDQAVLDLQRCVSL--EPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHTC-HHHHHHHHHHHHHH--CSSCHHHHHHHHHHHC
T ss_pred HHHHHHHcCC-HHHHHHHHHHHHHc--CCCcHHHHHHHHHHHh
Confidence 7777777777 77777777777763 35 5555555555543
No 182
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.69 E-value=4.4e-08 Score=76.27 Aligned_cols=91 Identities=14% Similarity=0.059 Sum_probs=69.8
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 038622 452 RRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGG---------PIGEAVDFVIEMLERGFLP-EFSSFYMLAEGL 521 (587)
Q Consensus 452 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~ 521 (587)
+.+.+++|++.++++++.. |.+...|..++.++...++ .+++|+..|+++++ +.| ...+++.++.+|
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~~~A~~~LG~ay 90 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCcHHHHHHHHHHH
Confidence 3455677777777777664 5566666666666666554 04599999999998 567 688999999999
Q ss_pred HccC-----------CHhHHHHHHHHHHhcCCCCC
Q 038622 522 VSLG-----------KEETLVELIDMVMDKAKFSD 545 (587)
Q Consensus 522 ~~~g-----------~~~~A~~~~~~~~~~~~~~~ 545 (587)
...| ++++|++.|+++++.+|.+.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 8875 89999999999999999873
No 183
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.68 E-value=9.9e-09 Score=99.20 Aligned_cols=132 Identities=14% Similarity=-0.033 Sum_probs=104.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 038622 408 YGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCN 487 (587)
Q Consensus 408 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (587)
+..++..+...|++++|.+.++++.+..+. +...+..++.++...|++++|+..++++++.. |.+...+..++.++..
T Consensus 9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 9 LKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSSSSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 334455667889999999999999886443 57889999999999999999999999999975 6678888899999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHH--HHccCCHhHHHHHHH-----------HHHhcCCCC
Q 038622 488 GGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEG--LVSLGKEETLVELID-----------MVMDKAKFS 544 (587)
Q Consensus 488 ~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~--~~~~g~~~~A~~~~~-----------~~~~~~~~~ 544 (587)
.|+ +++|++.++++++. .| +..++..++.+ +.+.|++++|++.++ ++++..|..
T Consensus 87 ~g~-~~eA~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 87 LGK-FRAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp HTC-HHHHHHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred cCC-HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence 999 99999999999984 45 56677777777 888999999999999 666666553
No 184
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.68 E-value=2.6e-07 Score=69.30 Aligned_cols=98 Identities=10% Similarity=0.033 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--ChhhHHHHH
Q 038622 55 ERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNP--DQFTYNTLV 132 (587)
Q Consensus 55 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~ 132 (587)
...+..++..+...|++++|...++++.+.. +.+...+..++.++...|++++|+..++++++.. +. +...+..++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence 3344444555555555555555555554443 3334444455555555555555555555555442 22 344445555
Q ss_pred HHHHhc-CChHHHHHHHHHHHhC
Q 038622 133 NGLCKV-GHVKQALEVMDMMLQE 154 (587)
Q Consensus 133 ~~~~~~-~~~~~a~~~~~~~~~~ 154 (587)
.++... |++++|.+.++.+...
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhhc
Confidence 555555 5555555555555443
No 185
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.68 E-value=7e-07 Score=87.84 Aligned_cols=156 Identities=9% Similarity=0.001 Sum_probs=135.3
Q ss_pred CChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhC
Q 038622 419 GRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKR----------TTEAMRLFREMMEKADPPDALTYKHVFRGLCNG 488 (587)
Q Consensus 419 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 488 (587)
...++|++.++++...++. +..+|+.-..++...|+ ++++++.++++++.+ |.+...|..-.+++...
T Consensus 43 ~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 3457889999999997655 66889888888888887 999999999999985 88899999999999999
Q ss_pred C--CCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccC-CHhHHHHHHHHHHhcCCCCC-chhhhhhhHHHH------
Q 038622 489 G--GPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLG-KEETLVELIDMVMDKAKFSD-RETSMVRGFLKI------ 557 (587)
Q Consensus 489 ~--~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~------ 557 (587)
+ + +++++++++++++. .| +..+|...+.++.+.| .++++++.++++++.+|.+. +|+..+.++...
T Consensus 121 ~~~~-~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 121 PEPN-WARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp SSCC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred cccc-HHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 9 5 79999999999995 56 8999999999999999 99999999999999999884 577777777664
Q ss_pred --------HHHHHHHHhcchhhhccCchhh
Q 038622 558 --------RKFQDALATFGDILDSRMPRKT 579 (587)
Q Consensus 558 --------~~~~~A~~~~~~~~~~~~~~~~ 579 (587)
+.+++|++.+.+++...|....
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P~~~s 227 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDPNDQS 227 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCSSCSH
T ss_pred cccccccHHHHHHHHHHHHHHHhhCCCCcc
Confidence 8899999999999988766543
No 186
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.67 E-value=4.6e-08 Score=90.02 Aligned_cols=153 Identities=9% Similarity=-0.023 Sum_probs=82.7
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHH
Q 038622 370 KFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQA 449 (587)
Q Consensus 370 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 449 (587)
...+..++..+...|++++|...|++++.. .|+... +...++.+++...+ ....|..++.+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l----------~~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV----------KNPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH----------HTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH----------HHHHHHHHHHH
Confidence 344566667777777888888888777763 222211 12223333333222 12378889999
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHH-HHccCCH
Q 038622 450 LFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEG-LVSLGKE 527 (587)
Q Consensus 450 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~-~~~~g~~ 527 (587)
+...|++++|+..++++++.+ +.+...+..++.++...|+ +++|+..|+++++ +.| +..++..++.+ ....+..
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~-~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~~~~~~~ 315 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQ-MDSARDDFRKAQK--YAPDDKAIRRELRALAEQEKALY 315 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTC-HHHHHHHHHHTTC-------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999975 6678888999999999999 9999999999987 456 67777777777 4456778
Q ss_pred hHHHHHHHHHHhcCCCCC
Q 038622 528 ETLVELIDMVMDKAKFSD 545 (587)
Q Consensus 528 ~~A~~~~~~~~~~~~~~~ 545 (587)
+++...+++++...|.+.
T Consensus 316 ~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 316 QKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp ------------------
T ss_pred HHHHHHHHHhhCCCCCCC
Confidence 899999999998888754
No 187
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.66 E-value=1.2e-06 Score=67.76 Aligned_cols=95 Identities=16% Similarity=0.055 Sum_probs=63.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh---HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---HHHHHHH
Q 038622 408 YGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTP---QAYNPVIQALFRRKRTTEAMRLFREMMEKADPPD---ALTYKHV 481 (587)
Q Consensus 408 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l 481 (587)
+..++..+...|++++|...++++.+..+. +. ..+..++.++...|++++|+..|+++++.. |.+ ...+..+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~l 82 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHH
Confidence 445566667777777777777777665332 22 466677777777777777777777777653 333 4556666
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHc
Q 038622 482 FRGLCNGGGPIGEAVDFVIEMLER 505 (587)
Q Consensus 482 ~~~~~~~~~~~~~A~~~~~~~~~~ 505 (587)
+.++...|+ +++|+..++++++.
T Consensus 83 a~~~~~~g~-~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 83 GLSQYGEGK-NTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHTTC-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCC-HHHHHHHHHHHHHH
Confidence 667777777 77777777777763
No 188
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.64 E-value=3e-07 Score=88.48 Aligned_cols=95 Identities=7% Similarity=-0.024 Sum_probs=76.0
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 038622 440 PQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLA 518 (587)
Q Consensus 440 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 518 (587)
...|..++.++...|++++|+..++++++.. +.+...+..++.++...|+ +++|+..|+++++ +.| +..++..++
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~-~~~A~~~~~~al~--l~P~~~~a~~~l~ 392 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNE-FESAKGDFEKVLE--VNPQNKAARLQIS 392 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHT--TC----CHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccC-HHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 4678888999999999999999999999875 6678888888889999998 9999999999998 456 677888899
Q ss_pred HHHHccCCHhHHHH-HHHHHH
Q 038622 519 EGLVSLGKEETLVE-LIDMVM 538 (587)
Q Consensus 519 ~~~~~~g~~~~A~~-~~~~~~ 538 (587)
.++...|++++|.+ .++++.
T Consensus 393 ~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 393 MCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 99998888887764 344443
No 189
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.63 E-value=1.7e-08 Score=76.63 Aligned_cols=93 Identities=10% Similarity=0.108 Sum_probs=78.1
Q ss_pred CCCCHHHHHHHHHHHHHcCC-CC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC-CchhhhhhhHHHHHHHHHHH
Q 038622 488 GGGPIGEAVDFVIEMLERGF-LP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS-DRETSMVRGFLKIRKFQDAL 564 (587)
Q Consensus 488 ~~~~~~~A~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~A~ 564 (587)
.|+ +++|+..++++++.+. .| +..++..++.+|...|++++|+..++++++..|.+ +.+..++.++...|++++|+
T Consensus 3 ~g~-~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGL-EAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCc-HHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 566 9999999999998421 25 57888999999999999999999999999999987 45888999999999999999
Q ss_pred HhcchhhhccCchhhhh
Q 038622 565 ATFGDILDSRMPRKTFR 581 (587)
Q Consensus 565 ~~~~~~~~~~~~~~~~~ 581 (587)
..|+++++..+....+.
T Consensus 82 ~~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHhCCCcHHHH
Confidence 99999999887665543
No 190
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.63 E-value=2.9e-07 Score=74.56 Aligned_cols=134 Identities=13% Similarity=0.076 Sum_probs=82.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCC----HH
Q 038622 407 TYGTLIGGLCKAGRVEVASKLLRSIQMKGIV-LT----PQAYNPVIQALFRRKRTTEAMRLFREMMEKAD-PPD----AL 476 (587)
Q Consensus 407 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~ 476 (587)
++..++..+...|++++|...++++.+.... ++ ...+..++..+...|++++|...++++++... .++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4555666666666666666666665543111 01 13566677777777777777777777665310 111 33
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcC
Q 038622 477 TYKHVFRGLCNGGGPIGEAVDFVIEMLER----GFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKA 541 (587)
Q Consensus 477 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 541 (587)
.+..++..+...|+ +++|...++++++. +..+ ...++..++.++...|++++|.+.++++++..
T Consensus 91 ~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 91 SCYSLGNTYTLLQD-YEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 45566666777777 77887777777642 1011 24456677778888888888888887776643
No 191
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.63 E-value=2.5e-06 Score=82.03 Aligned_cols=198 Identities=7% Similarity=-0.081 Sum_probs=107.6
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCCCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCC
Q 038622 306 LIDGFCKLKRIEEAEEIFDEMEIQGISRNS----------------VTYNTLIDGLCKSRRVEDAAQLMDQMIMEG-LKP 368 (587)
Q Consensus 306 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 368 (587)
-+..+.+.|++++|++.|..+.+....... ..+..++..|...|++++|.+.+.++.... ..+
T Consensus 10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~ 89 (434)
T 4b4t_Q 10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA 89 (434)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence 345566778888888888777765422110 135566677777777777777776665421 111
Q ss_pred CHh----hHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHHc--CCC
Q 038622 369 DKF----TYNSLLTYYCRAGDIKRAADIVQNMTSN----GCEP-DIVTYGTLIGGLCKAGRVEVASKLLRSIQMK--GIV 437 (587)
Q Consensus 369 ~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~ 437 (587)
+.. +.+.+...+...|+++.|..+++..... +..+ ...++..++..+...|++++|..+++++... +..
T Consensus 90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 111 2222333344556677777766665432 1111 1334556666666777777777776666543 111
Q ss_pred CC---hHhHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCC----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 038622 438 LT---PQAYNPVIQALFRRKRTTEAMRLFREMMEK--ADPPD----ALTYKHVFRGLCNGGGPIGEAVDFVIEMLE 504 (587)
Q Consensus 438 ~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 504 (587)
.. ...+..++..|...|++++|..++++++.. .++.+ ...+..++..+...++ +++|...+.++.+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKD-YKTAFSYFFESFE 244 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSC-HHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHH
Confidence 11 245566666666777777777776666542 11111 1223334444445555 6677666666664
No 192
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.62 E-value=2.6e-07 Score=74.90 Aligned_cols=78 Identities=12% Similarity=-0.000 Sum_probs=61.0
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CH-HHHHHH
Q 038622 440 PQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EF-SSFYML 517 (587)
Q Consensus 440 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~-~~~~~l 517 (587)
...|..++.++...|++++|+..++++++.+ |.+...+..++.++...|+ +++|+..++++++ +.| +. .+...+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~-~~~A~~~~~~al~--l~p~~~~~~~~~l 138 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWK-LDEAEEDLKLLLR--NHPAAASVVAREM 138 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHH--HCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhc-HHHHHHHHHHHHh--cCCCCHHHHHHHH
Confidence 3578888889999999999999999998875 6678888888888999998 9999999999988 456 44 334444
Q ss_pred HHHH
Q 038622 518 AEGL 521 (587)
Q Consensus 518 ~~~~ 521 (587)
..+.
T Consensus 139 ~~~~ 142 (162)
T 3rkv_A 139 KIVT 142 (162)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 193
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.61 E-value=6.7e-08 Score=78.46 Aligned_cols=135 Identities=13% Similarity=0.071 Sum_probs=106.4
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCC----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--C-CC--C
Q 038622 441 QAYNPVIQALFRRKRTTEAMRLFREMMEKAD-PPD----ALTYKHVFRGLCNGGGPIGEAVDFVIEMLERG--F-LP--E 510 (587)
Q Consensus 441 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~--~-~p--~ 510 (587)
.++..++..+...|++++|+..++++++... .++ ...+..++..+...|+ +++|...++++++.. . .+ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGE-FETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhCCcHHH
Confidence 5678899999999999999999999987411 112 1366778888999999 999999999988531 1 11 1
Q ss_pred HHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC-------CchhhhhhhHHHHHHHHHHHHhcchhhhccCc
Q 038622 511 FSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS-------DRETSMVRGFLKIRKFQDALATFGDILDSRMP 576 (587)
Q Consensus 511 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 576 (587)
..++..++.++...|++++|...++++++..+.. .....++.++...|++++|+..++++++....
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 5577889999999999999999999998764322 13577888899999999999999998876543
No 194
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.60 E-value=3.6e-07 Score=84.94 Aligned_cols=91 Identities=10% Similarity=-0.022 Sum_probs=78.0
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHH
Q 038622 439 TPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYML 517 (587)
Q Consensus 439 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l 517 (587)
+...|..++.++...|++++|+..++++++.. +.+...+..++.++...|+ +++|+..++++++. .| +..++..+
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~-~~eA~~~l~~Al~l--~P~~~~~~~~l 347 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKE-YDQALADLKKAQEI--APEDKAIQAEL 347 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccC-HHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 34678899999999999999999999999874 6678888889999999999 99999999999984 56 78888889
Q ss_pred HHHHHccCCHhHHHHH
Q 038622 518 AEGLVSLGKEETLVEL 533 (587)
Q Consensus 518 ~~~~~~~g~~~~A~~~ 533 (587)
+.++...++.+++.+.
T Consensus 348 ~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 348 LKVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999888888777643
No 195
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.57 E-value=3.5e-06 Score=80.99 Aligned_cols=201 Identities=10% Similarity=-0.031 Sum_probs=148.4
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHHCCCCCCH----------------HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 038622 269 NMLIDSLCSRGMLEEALKLLKEMESSGCARNV----------------VTYNTLIDGFCKLKRIEEAEEIFDEMEIQGIS 332 (587)
Q Consensus 269 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 332 (587)
..-++.+...|++++|++.|..+.+....... .++..++..|...|++++|.+.+..+......
T Consensus 8 l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~ 87 (434)
T 4b4t_Q 8 LEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQ 87 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 34466778899999999999999887522211 24678999999999999999999987653211
Q ss_pred -CCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--C
Q 038622 333 -RNS----VTYNTLIDGLCKSRRVEDAAQLMDQMIME----GLKPD-KFTYNSLLTYYCRAGDIKRAADIVQNMTSN--G 400 (587)
Q Consensus 333 -~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~ 400 (587)
++. .+...+...+...|+++.|..++++.... +..+. ..++..++..+...|++++|..+++.+... +
T Consensus 88 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 167 (434)
T 4b4t_Q 88 FAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKK 167 (434)
T ss_dssp SCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred ccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHh
Confidence 111 12333444555678999999999988752 22222 456788899999999999999999988753 2
Q ss_pred CCC---CcchHHHHHHHHHhcCChHHHHHHHHHHHHc--CC-CCC---hHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038622 401 CEP---DIVTYGTLIGGLCKAGRVEVASKLLRSIQMK--GI-VLT---PQAYNPVIQALFRRKRTTEAMRLFREMMEK 469 (587)
Q Consensus 401 ~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~-~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (587)
... ....+..+++.|...|++++|..+++++... .. .|. ...+..++..+...|++++|...|.++.+.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 168 LDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp SSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 211 1457888899999999999999999988764 11 111 245667778888999999999999999874
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.54 E-value=1e-06 Score=65.86 Aligned_cols=96 Identities=14% Similarity=0.078 Sum_probs=68.1
Q ss_pred CHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCchhhhhh
Q 038622 474 DALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDRETSMVR 552 (587)
Q Consensus 474 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 552 (587)
+...+..++..+...|+ +++|+..++++++. .| ++.++..++.++...|++++|+..++++++..|..........
T Consensus 3 ~~~~~~~~g~~~~~~~~-~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGL-YREAVHCYDQLITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHH
Confidence 34556677777888888 88888888888874 45 6888888888888888888888888888888887633333444
Q ss_pred hHHHHHHHHHHHHhcchhhh
Q 038622 553 GFLKIRKFQDALATFGDILD 572 (587)
Q Consensus 553 ~~~~~~~~~~A~~~~~~~~~ 572 (587)
++...|....++..+...++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~ 99 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVV 99 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSS
T ss_pred HHHHHHHHHHHHHhHhhhHh
Confidence 45555555555554444443
No 197
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.50 E-value=1.1e-07 Score=71.25 Aligned_cols=95 Identities=16% Similarity=0.213 Sum_probs=78.3
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-C------H
Q 038622 439 TPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-E------F 511 (587)
Q Consensus 439 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~------~ 511 (587)
+...+..++..+...|++++|+..|+++++.. |.+...+..++.++...|+ +++|+..++++++ +.| + .
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~--~~p~~~~~~~~~ 78 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGE-YTQAIQMCQQGLR--YTSTAEHVAIRS 78 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHT--SCSSTTSHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcC-HHHHHHHHHHHHH--hCCCccHHHHHH
Confidence 45678888999999999999999999999874 6678888888989999999 9999999999997 456 4 6
Q ss_pred HHHHHHHHHHHccCCHhHHHHHHHHH
Q 038622 512 SSFYMLAEGLVSLGKEETLVELIDMV 537 (587)
Q Consensus 512 ~~~~~l~~~~~~~g~~~~A~~~~~~~ 537 (587)
.++..++.++...|++++|+..++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 79 KLQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 67788888888888887777665543
No 198
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.49 E-value=2.4e-07 Score=72.13 Aligned_cols=90 Identities=8% Similarity=0.025 Sum_probs=78.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCH----------hHHHHHHHHHHhcCCCC-CchhhhhhhHH
Q 038622 488 GGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKE----------ETLVELIDMVMDKAKFS-DRETSMVRGFL 555 (587)
Q Consensus 488 ~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~-~~~~~~~~~~~ 555 (587)
.+. +++|++.++++++. .| ++..+..++.++...|++ ++|+..|+++++.+|+. +.++.++.+|.
T Consensus 15 ~~~-feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 15 ILL-FEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHH-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HhH-HHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 344 89999999999984 56 899999999999998875 59999999999999987 56899999999
Q ss_pred HHH-----------HHHHHHHhcchhhhccCchhhh
Q 038622 556 KIR-----------KFQDALATFGDILDSRMPRKTF 580 (587)
Q Consensus 556 ~~~-----------~~~~A~~~~~~~~~~~~~~~~~ 580 (587)
..| ++++|++.|+++++.+|.....
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y 127 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY 127 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHH
Confidence 885 8999999999999998765443
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.43 E-value=1.3e-06 Score=65.78 Aligned_cols=84 Identities=11% Similarity=0.070 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHH
Q 038622 457 TEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELID 535 (587)
Q Consensus 457 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~ 535 (587)
++|+..|+++++.. |.+...+..++..+...|+ +++|+..++++++. .| +..++..++.+|...|++++|+..++
T Consensus 2 ~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 77 (115)
T 2kat_A 2 QAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQ-FDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWE 77 (115)
T ss_dssp CCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccC-HHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 35778888888864 6677888888888888898 99999999999884 45 68888899999999999999999999
Q ss_pred HHHhcCCCC
Q 038622 536 MVMDKAKFS 544 (587)
Q Consensus 536 ~~~~~~~~~ 544 (587)
++++..|..
T Consensus 78 ~al~~~~~~ 86 (115)
T 2kat_A 78 SGLAAAQSR 86 (115)
T ss_dssp HHHHHHHHH
T ss_pred HHHHhcccc
Confidence 998877653
No 200
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.41 E-value=9.9e-06 Score=63.07 Aligned_cols=111 Identities=6% Similarity=-0.030 Sum_probs=69.6
Q ss_pred CChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----CCCCHHH
Q 038622 419 GRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCN----GGGPIGE 494 (587)
Q Consensus 419 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~ 494 (587)
+++++|.++|++..+.+ ++... ++..|...+..++|++.|+++.+.| +......++..+.. .++ +++
T Consensus 9 ~d~~~A~~~~~~aa~~g---~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d-~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN---EMFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKD-LRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT---CTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCC-HHH
T ss_pred cCHHHHHHHHHHHHcCC---CHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCcc-HHH
Confidence 35666666666666654 22222 6666666666666777777776643 44555556655555 445 777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHc----cCCHhHHHHHHHHHHhcC
Q 038622 495 AVDFVIEMLERGFLPEFSSFYMLAEGLVS----LGKEETLVELIDMVMDKA 541 (587)
Q Consensus 495 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 541 (587)
|+.+++++.+. .++.+...|+.+|.. .+++++|..+++++.+.+
T Consensus 80 A~~~~~~Aa~~---g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGL---NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 77777777763 356666777777776 677777777777776654
No 201
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.34 E-value=6e-07 Score=67.74 Aligned_cols=84 Identities=8% Similarity=-0.019 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC-CchhhhhhhHHHHHHHHHHHHhcchh
Q 038622 493 GEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS-DRETSMVRGFLKIRKFQDALATFGDI 570 (587)
Q Consensus 493 ~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~ 570 (587)
++|+..++++++. .| ++..+..++.+|...|++++|+..++++++.+|.. ..+..++.+|...|++++|+..|+++
T Consensus 2 ~~a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3578899999984 46 78999999999999999999999999999999976 45889999999999999999999999
Q ss_pred hhccCchh
Q 038622 571 LDSRMPRK 578 (587)
Q Consensus 571 ~~~~~~~~ 578 (587)
++..+...
T Consensus 80 l~~~~~~~ 87 (115)
T 2kat_A 80 LAAAQSRG 87 (115)
T ss_dssp HHHHHHHT
T ss_pred HHhccccc
Confidence 98765443
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.29 E-value=6.7e-06 Score=58.63 Aligned_cols=63 Identities=16% Similarity=0.280 Sum_probs=29.7
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCC
Q 038622 478 YKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKF 543 (587)
Q Consensus 478 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 543 (587)
+..++..+...|+ +++|+..++++++. .| +..++..++.++...|++++|+..++++++..|.
T Consensus 12 ~~~la~~~~~~~~-~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 75 (91)
T 1na3_A 12 WYNLGNAYYKQGD-YDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75 (91)
T ss_dssp HHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHccC-HHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 3344444444444 55555555554442 22 3444444555555555555555555555544443
No 203
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.28 E-value=2.9e-05 Score=60.39 Aligned_cols=110 Identities=10% Similarity=-0.084 Sum_probs=66.6
Q ss_pred CHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHh----cCCHHHHH
Q 038622 385 DIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFR----RKRTTEAM 460 (587)
Q Consensus 385 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 460 (587)
++++|...|++..+.|. .... ++..|...+.+++|.++|++..+.+ ++..+..++..|.. .+++++|+
T Consensus 10 d~~~A~~~~~~aa~~g~---~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNE---MFGC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTC---TTHH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCC---Hhhh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 45666666666666542 1222 5555655566666666666666642 55566666666666 56677777
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcC
Q 038622 461 RLFREMMEKADPPDALTYKHVFRGLCN----GGGPIGEAVDFVIEMLERG 506 (587)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~A~~~~~~~~~~~ 506 (587)
++|+++.+.| +......+...+.. .++ +++|..+++++.+.|
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d-~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKN-EKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcC-HHHHHHHHHHHHHCC
Confidence 7777776643 44455556655555 455 777777777776644
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.25 E-value=4.6e-06 Score=59.50 Aligned_cols=83 Identities=18% Similarity=0.294 Sum_probs=72.3
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHH
Q 038622 439 TPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYML 517 (587)
Q Consensus 439 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l 517 (587)
+...+..++..+...|++++|+..++++++.. +.+...+..++..+...|+ +++|+..++++++. .| +..++..+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~--~p~~~~~~~~l 83 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGD-YDEAIEYYQKALEL--DPNNAEAKQNL 83 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhc--CCCCHHHHHHH
Confidence 35678889999999999999999999999975 6678888899999999999 99999999999984 46 78888899
Q ss_pred HHHHHccC
Q 038622 518 AEGLVSLG 525 (587)
Q Consensus 518 ~~~~~~~g 525 (587)
+.++...|
T Consensus 84 ~~~~~~~g 91 (91)
T 1na3_A 84 GNAKQKQG 91 (91)
T ss_dssp HHHHHHHC
T ss_pred HHHHHhcC
Confidence 98887654
No 205
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.25 E-value=4e-06 Score=61.04 Aligned_cols=88 Identities=16% Similarity=0.251 Sum_probs=71.7
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHH-HHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCchhhhhhhHHHH
Q 038622 480 HVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFS-SFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDRETSMVRGFLKI 557 (587)
Q Consensus 480 ~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (587)
..+..+...|+ +++|+..++++++. .| +.. ++..++.+|...|++++|+..++++++.+|...... ..
T Consensus 5 ~~a~~~~~~~~-~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~-------~~ 74 (99)
T 2kc7_A 5 KTIKELINQGD-IENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ-------AR 74 (99)
T ss_dssp HHHHHHHHHTC-HHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH-------HH
T ss_pred HHHHHHHHcCC-HHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH-------HH
Confidence 34556778888 99999999999984 46 677 899999999999999999999999999999864322 12
Q ss_pred HHHHHHHHhcchhhhccCch
Q 038622 558 RKFQDALATFGDILDSRMPR 577 (587)
Q Consensus 558 ~~~~~A~~~~~~~~~~~~~~ 577 (587)
+.+.+|+..|+++....+..
T Consensus 75 ~~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp HHHHHHHHHHCCTTHHHHCC
T ss_pred HHHHHHHHHHHHHhccCccc
Confidence 78999999999988766543
No 206
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.19 E-value=1.5e-05 Score=76.42 Aligned_cols=59 Identities=10% Similarity=0.023 Sum_probs=25.9
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHh-----cCCCCCc----hhhhhhhHHHHHHHHHHHHhcchhhh
Q 038622 514 FYMLAEGLVSLGKEETLVELIDMVMD-----KAKFSDR----ETSMVRGFLKIRKFQDALATFGDILD 572 (587)
Q Consensus 514 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~----~~~~~~~~~~~~~~~~A~~~~~~~~~ 572 (587)
+..|+.+|..+|++++|+.+++++++ .+|+.+. ...+..++...+.+.+|...|.++.+
T Consensus 396 l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 396 VMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555544442 2233211 22333444444555555555544444
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.14 E-value=1.8e-06 Score=63.04 Aligned_cols=70 Identities=16% Similarity=0.237 Sum_probs=61.1
Q ss_pred CCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC
Q 038622 472 PPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS 544 (587)
Q Consensus 472 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 544 (587)
|.+...+..++..+...|+ +++|+..++++++. .| ++.++..++.+|...|++++|+..++++++..+..
T Consensus 4 p~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 74 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDN-ASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE 74 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence 5677888889999999999 99999999999984 46 68899999999999999999999999999876643
No 208
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.13 E-value=1.1e-05 Score=58.74 Aligned_cols=83 Identities=18% Similarity=0.195 Sum_probs=61.1
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-CCCHHHHHHH
Q 038622 439 TPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGF-LPEFSSFYML 517 (587)
Q Consensus 439 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~-~p~~~~~~~l 517 (587)
+...+..++.++...|++++|+..|+++++.+ |.+...+..++.++...|+ +++|++.++++++..- .++......+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~l~~~~~~~~~~~~l 83 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDR-TDDAIDTYAQGIEVAREEGTQKDLSEL 83 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhhhcCCchhHHHHH
Confidence 56778888889999999999999999998875 5667778888888888888 9999999988886310 1244444444
Q ss_pred HHHHHc
Q 038622 518 AEGLVS 523 (587)
Q Consensus 518 ~~~~~~ 523 (587)
...+.+
T Consensus 84 ~~~l~~ 89 (100)
T 3ma5_A 84 QDAKLK 89 (100)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 209
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.11 E-value=2.1e-05 Score=75.34 Aligned_cols=127 Identities=13% Similarity=-0.010 Sum_probs=92.4
Q ss_pred HHHhcCChHHHHHHHHHHHHc---CCCCC----hHhHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CC-CCC-HHHHH
Q 038622 414 GLCKAGRVEVASKLLRSIQMK---GIVLT----PQAYNPVIQALFRRKRTTEAMRLFREMMEK-----AD-PPD-ALTYK 479 (587)
Q Consensus 414 ~~~~~~~~~~a~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~-~~~~~ 479 (587)
.+..+|++++|..++++.++. -+.++ ..+++.++.+|..+|++++|..+++++++. |. .|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 345678888888888877654 11122 256788899999999999999999888762 21 222 34577
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHccCCHhHHHHHHHHHHhcC
Q 038622 480 HVFRGLCNGGGPIGEAVDFVIEMLER---GFLPE----FSSFYMLAEGLVSLGKEETLVELIDMVMDKA 541 (587)
Q Consensus 480 ~l~~~~~~~~~~~~~A~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 541 (587)
.++..|..+|+ +++|+.+++++++. -+.|+ ......+..++..+|++++|..+|.++.+..
T Consensus 398 nLa~~~~~~G~-~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGH-IEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCC-HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999 99999999998731 12242 3444678888889999999999999887644
No 210
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.09 E-value=5.9e-05 Score=53.43 Aligned_cols=77 Identities=9% Similarity=0.036 Sum_probs=63.1
Q ss_pred CCCHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCchh
Q 038622 472 PPDALTYKHVFRGLCNGGG--PIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDRET 548 (587)
Q Consensus 472 ~~~~~~~~~l~~~~~~~~~--~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 548 (587)
++++..+..++.++...++ ..++|..+++++++ +.| ++.+...++..+++.|++++|+..++++++.+|. +.+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~--~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~~ 79 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ--LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLDR 79 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCCH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccH
Confidence 6677788888887765444 26899999999998 457 7999999999999999999999999999999998 6554
Q ss_pred hhh
Q 038622 549 SMV 551 (587)
Q Consensus 549 ~~~ 551 (587)
..+
T Consensus 80 ~~i 82 (93)
T 3bee_A 80 VTI 82 (93)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 211
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.96 E-value=0.00011 Score=56.55 Aligned_cols=88 Identities=14% Similarity=0.139 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHccCCHhHH
Q 038622 456 TTEAMRLFREMMEKADPPDALTYKHVFRGLCNGG---GPIGEAVDFVIEMLERGFLP--EFSSFYMLAEGLVSLGKEETL 530 (587)
Q Consensus 456 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A 530 (587)
...+.+.|.+..+.+ +++..+...+++++.+.. + .++++.+++..++.+ .| ..+.++.|+-.+++.|++++|
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~-~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDD-IRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHH-HHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHH-HHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 456677777777766 678888888888988877 4 669999999999854 35 478889999999999999999
Q ss_pred HHHHHHHHhcCCCCCc
Q 038622 531 VELIDMVMDKAKFSDR 546 (587)
Q Consensus 531 ~~~~~~~~~~~~~~~~ 546 (587)
+++++++++.+|.+..
T Consensus 91 ~~y~~~lL~ieP~n~Q 106 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNNQ 106 (152)
T ss_dssp HHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHhcCCCCHH
Confidence 9999999999998743
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.89 E-value=0.00027 Score=63.62 Aligned_cols=72 Identities=7% Similarity=0.009 Sum_probs=59.0
Q ss_pred CCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCc
Q 038622 472 PPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDR 546 (587)
Q Consensus 472 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 546 (587)
+.++..+..+...+...|+ +++|+..++++++. .|+...+..++.++.-.|++++|.+.+++++..+|..++
T Consensus 274 ~~~a~~~~alal~~l~~gd-~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGK-TDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred CcCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 6677777777666666788 99999999999985 478777788899999999999999999999999887654
No 213
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.87 E-value=2.2e-05 Score=57.00 Aligned_cols=87 Identities=13% Similarity=0.090 Sum_probs=50.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHc
Q 038622 446 VIQALFRRKRTTEAMRLFREMMEKADPPDAL-TYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVS 523 (587)
Q Consensus 446 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~ 523 (587)
.+..+...|++++|+..|+++++.. |.+.. .+..++.++...|+ +++|++.++++++. .| +..++..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~--~p~~~~~~~~------- 74 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGD-WQKALNNYQSAIEL--NPDSPALQAR------- 74 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHH--CTTSTHHHHH-------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhc--CCCcHHHHHH-------
Confidence 4555666666677777766666653 44555 56666666666666 67777777776663 34 3333311
Q ss_pred cCCHhHHHHHHHHHHhcCCCC
Q 038622 524 LGKEETLVELIDMVMDKAKFS 544 (587)
Q Consensus 524 ~g~~~~A~~~~~~~~~~~~~~ 544 (587)
+.+.++...++++...+|.+
T Consensus 75 -~~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 75 -KMVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp -HHHHHHHHHHCCTTHHHHCC
T ss_pred -HHHHHHHHHHHHHhccCccc
Confidence 34555566665555555443
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.76 E-value=0.00012 Score=65.81 Aligned_cols=72 Identities=11% Similarity=-0.005 Sum_probs=62.2
Q ss_pred CCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCchhhhhhhHHHHHHHHHHHHhcchhhhccCchhhh
Q 038622 509 PEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDRETSMVRGFLKIRKFQDALATFGDILDSRMPRKTF 580 (587)
Q Consensus 509 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 580 (587)
.++.++..++..+...|++++|+..+++++..+|....+..++.++...|+.++|++.|.++...+|.+..+
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~ 346 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTL 346 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChH
Confidence 378888889888888899999999999999999654345677888999999999999999999999877644
No 215
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.68 E-value=5.8e-05 Score=58.04 Aligned_cols=88 Identities=15% Similarity=0.103 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccC---CHhHHHHHHHHHHhcC-CC--CCchhhhhhhHHHHHHHHHHHH
Q 038622 492 IGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLG---KEETLVELIDMVMDKA-KF--SDRETSMVRGFLKIRKFQDALA 565 (587)
Q Consensus 492 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~A~~ 565 (587)
...+.+.|.+..+.+ +++..+...+++++.+.+ +.++++.+++.+++.+ |. .+.++.++.+|++.|++++|.+
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 556777788877765 479999999999999998 6679999999999988 62 3668999999999999999999
Q ss_pred hcchhhhccCchhhh
Q 038622 566 TFGDILDSRMPRKTF 580 (587)
Q Consensus 566 ~~~~~~~~~~~~~~~ 580 (587)
+++++++..|...+-
T Consensus 93 y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHCTTCHHH
T ss_pred HHHHHHhcCCCCHHH
Confidence 999999998765443
No 216
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.58 E-value=1.3e-07 Score=86.11 Aligned_cols=223 Identities=15% Similarity=0.175 Sum_probs=124.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 038622 54 DERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVN 133 (587)
Q Consensus 54 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 133 (587)
.+.+|..++.+..+.|...+|+..|-++ .++..|..++.+..+.|.+++-..++..+.+. ..++..=+.|+.
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHH
Confidence 4567888888888888888877654322 24455667778888888888888887766554 334455567788
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHH
Q 038622 134 GLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVEE 213 (587)
Q Consensus 134 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 213 (587)
+|++.++..+..+.+ ..|+..-...+++-|...|.++.|.-+|..+.. |..|+.++...|++..
T Consensus 125 ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~ 188 (624)
T 3lvg_A 125 ALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQA 188 (624)
T ss_dssp HHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGS
T ss_pred HHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHH
Confidence 888888766544432 135666667777777788877777766654322 2234444555555555
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHH
Q 038622 214 ATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMES 293 (587)
Q Consensus 214 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 293 (587)
|.+.-++ -.++.+|..+-.+|...+++.-|.-.--.++-. ++ -...++..|-..|-+++-+.+++..+.
T Consensus 189 AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglg 257 (624)
T 3lvg_A 189 AVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALG 257 (624)
T ss_dssp STTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTT
T ss_pred HHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhC
Confidence 5543221 114455555555555555555444333222211 00 111233334445555555555555443
Q ss_pred CCCCCCHHHHHHHHHHHHc
Q 038622 294 SGCARNVVTYNTLIDGFCK 312 (587)
Q Consensus 294 ~~~~~~~~~~~~l~~~~~~ 312 (587)
.. ......++.|+-.|++
T Consensus 258 lE-rAHmGmFTELaILYsK 275 (624)
T 3lvg_A 258 LE-RAHMGMFTELAILYSK 275 (624)
T ss_dssp ST-TCCHHHHHHHHHHHHS
T ss_pred CC-chhHHHHHHHHHHHHh
Confidence 22 2233444444444443
No 217
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.52 E-value=0.00064 Score=58.42 Aligned_cols=90 Identities=12% Similarity=0.166 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHc-c
Q 038622 456 TTEAMRLFREMMEKADPPD---ALTYKHVFRGLCNG-----GGPIGEAVDFVIEMLERGFLP--EFSSFYMLAEGLVS-L 524 (587)
Q Consensus 456 ~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----~~~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~-~ 524 (587)
...|...++++++.+ |+ ...+..++..|... |+ .++|.++|+++++ +.| +...+...++.+.. .
T Consensus 179 l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd-~ekA~~~ferAL~--LnP~~~id~~v~YA~~l~~~~ 253 (301)
T 3u64_A 179 VHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGG-MEKAHTAFEHLTR--YCSAHDPDHHITYADALCIPL 253 (301)
T ss_dssp HHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCC-HHHHHHHHHHHHH--HCCTTCSHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCC-HHHHHHHHHHHHH--hCCCCCchHHHHHHHHHHHhc
Confidence 567888888888863 44 56777788777774 66 9999999999998 456 37888889998877 4
Q ss_pred CCHhHHHHHHHHHHhcCCCCCchhhh
Q 038622 525 GKEETLVELIDMVMDKAKFSDRETSM 550 (587)
Q Consensus 525 g~~~~A~~~~~~~~~~~~~~~~~~~~ 550 (587)
|++++|.+.+++++..+|..+....+
T Consensus 254 gd~~~a~~~L~kAL~a~p~~~P~~~l 279 (301)
T 3u64_A 254 NNRAGFDEALDRALAIDPESVPHNKL 279 (301)
T ss_dssp TCHHHHHHHHHHHHHCCGGGCSSCHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCChhH
Confidence 99999999999999988885333333
No 218
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.52 E-value=0.0011 Score=48.21 Aligned_cols=71 Identities=8% Similarity=-0.008 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----C-CCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCC
Q 038622 474 DALTYKHVFRGLCNGGGPIGEAVDFVIEMLERG-----F-LPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSD 545 (587)
Q Consensus 474 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~-----~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 545 (587)
+......++..+...++ ++.|+..++++++.. . .+...++..|+.++.+.|++++|+..++++++..|.+.
T Consensus 4 sa~dc~~lG~~~~~~~~-y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~ 80 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEAD-YYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQ 80 (104)
T ss_dssp CHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred CHHHHHHHHHHHHHccc-hHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Confidence 33444566666777777 777777777776431 0 12466777888888888888888888888888888763
No 219
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.51 E-value=1.8e-07 Score=85.17 Aligned_cols=233 Identities=13% Similarity=0.139 Sum_probs=144.0
Q ss_pred CHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 038622 19 DVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVH 98 (587)
Q Consensus 19 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 98 (587)
.+.+|..|.++.++.+...+|+..|=++ .|+..|..++.+..+.|.+++-++.+.-+.+. ..++.+=+.|+.
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHH
Confidence 3458999999999999999998765332 36667889999999999999999998887765 345566678999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHH
Q 038622 99 GFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEE 178 (587)
Q Consensus 99 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 178 (587)
+|++.++..+-.++ +. .|+..-...++.-|...|.++.|.-+|..+.. |..+..++...|++..
T Consensus 125 ayAk~~rL~elEef----l~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~ 188 (624)
T 3lvg_A 125 ALAKTNRLAELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQA 188 (624)
T ss_dssp HHHTSCSSSTTTST----TS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGS
T ss_pred HHHhhCcHHHHHHH----Hc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHH
Confidence 99999987664433 22 45666677888888888888888777654432 2334445555666665
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038622 179 AVEILNQMILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMKT 258 (587)
Q Consensus 179 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 258 (587)
|.+.-++ ..++.+|..+..+|...+.+.-|.-.--.+.-. +.....++..|-..|-+++-+.+++....
T Consensus 189 AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglg 257 (624)
T 3lvg_A 189 AVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALG 257 (624)
T ss_dssp STTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTT
T ss_pred HHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhC
Confidence 5543322 225556666666666666555554332222211 11122334445555666666666665553
Q ss_pred cCCCCCHHhHHHHHHHHHccCChHHHHHHH
Q 038622 259 KGCQPDEFTYNMLIDSLCSRGMLEEALKLL 288 (587)
Q Consensus 259 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 288 (587)
.. +.....++.|+-.|.+- ++++..+.+
T Consensus 258 lE-rAHmGmFTELaILYsKY-~PeKlmEHl 285 (624)
T 3lvg_A 258 LE-RAHMGMFTELAILYSKF-KPQKMREHL 285 (624)
T ss_dssp ST-TCCHHHHHHHHHHHHSS-CTTHHHHHH
T ss_pred CC-chhHHHHHHHHHHHHhc-CHHHHHHHH
Confidence 32 33445555555555443 333333333
No 220
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.49 E-value=0.001 Score=46.96 Aligned_cols=67 Identities=10% Similarity=0.074 Sum_probs=34.5
Q ss_pred CCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038622 52 APDERTFTTLMQGLIEEGN---LDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSE 119 (587)
Q Consensus 52 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 119 (587)
+.|+..+..++.++...++ .++|...++++++.+ |.+......++..+...|++++|+..|+++++.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3445555555555443322 455555555555554 444555555555555555555555555555554
No 221
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.48 E-value=0.00037 Score=65.59 Aligned_cols=88 Identities=9% Similarity=0.021 Sum_probs=66.2
Q ss_pred hcCCHHHHHHHHHHHHhc---CCCCC----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCCC---C-HHHHHHH
Q 038622 452 RRKRTTEAMRLFREMMEK---ADPPD----ALTYKHVFRGLCNGGGPIGEAVDFVIEMLER---GFLP---E-FSSFYML 517 (587)
Q Consensus 452 ~~g~~~~A~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~---~~~p---~-~~~~~~l 517 (587)
..|++++|+.+++++++. -+.|+ ..+++.++.+|..+|+ +++|+.+++++++. -+.| + ...+..|
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~-~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQD-WEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcC-HHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 457889999999888763 11222 3457788888899998 99999999998731 1223 2 4466789
Q ss_pred HHHHHccCCHhHHHHHHHHHHhc
Q 038622 518 AEGLVSLGKEETLVELIDMVMDK 540 (587)
Q Consensus 518 ~~~~~~~g~~~~A~~~~~~~~~~ 540 (587)
+.+|..+|++++|+.+++++++.
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHH
Confidence 99999999999999999998763
No 222
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.46 E-value=0.0012 Score=48.63 Aligned_cols=91 Identities=12% Similarity=0.095 Sum_probs=69.6
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCCC--CHHHHHHHHHHHHccCCH
Q 038622 453 RKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGE---AVDFVIEMLERGFLP--EFSSFYMLAEGLVSLGKE 527 (587)
Q Consensus 453 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~ 527 (587)
......+.+.|.+....| +++..+-..+++++.+... ... ++.+++...+.+ .| ..+.++.|+-.+++.|+|
T Consensus 14 ~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~-~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRY-NDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSS-HHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhH
Confidence 344556666777776665 5777777788888888776 554 888888887743 34 466778899999999999
Q ss_pred hHHHHHHHHHHhcCCCCCc
Q 038622 528 ETLVELIDMVMDKAKFSDR 546 (587)
Q Consensus 528 ~~A~~~~~~~~~~~~~~~~ 546 (587)
++|++.++.+++..|.+..
T Consensus 91 ~~A~~~~~~lL~~eP~n~Q 109 (126)
T 1nzn_A 91 EKALKYVRGLLQTEPQNNQ 109 (126)
T ss_dssp HHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHhCCCCHH
Confidence 9999999999999998743
No 223
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.32 E-value=0.0012 Score=62.19 Aligned_cols=93 Identities=12% Similarity=0.071 Sum_probs=71.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhc---CCCCC----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCCC-C---HH
Q 038622 447 IQALFRRKRTTEAMRLFREMMEK---ADPPD----ALTYKHVFRGLCNGGGPIGEAVDFVIEMLER---GFLP-E---FS 512 (587)
Q Consensus 447 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~---~~~p-~---~~ 512 (587)
+..+...|++++|+..++++++. -+.|+ ..+++.++.+|...|+ +++|+.+++++++. -+.| . ..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~-~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGL-LEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhcc-HHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 44566788999999999999874 12232 3457778888999999 99999999998831 1223 2 44
Q ss_pred HHHHHHHHHHccCCHhHHHHHHHHHHhc
Q 038622 513 SFYMLAEGLVSLGKEETLVELIDMVMDK 540 (587)
Q Consensus 513 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 540 (587)
.+..|+.+|..+|++++|+.+++++++.
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 6688999999999999999999998853
No 224
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.27 E-value=0.0027 Score=54.62 Aligned_cols=110 Identities=12% Similarity=-0.062 Sum_probs=78.4
Q ss_pred ChHHHHHHHHHHHHcCCCCC---hHhHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhC-CC
Q 038622 420 RVEVASKLLRSIQMKGIVLT---PQAYNPVIQALFRR-----KRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNG-GG 490 (587)
Q Consensus 420 ~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~ 490 (587)
....|...++++.+. .|+ ...|..++..|... |+.++|.++|+++++.+..-+......++..++.. |+
T Consensus 178 ~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd 255 (301)
T 3u64_A 178 TVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNN 255 (301)
T ss_dssp HHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTC
T ss_pred hHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Confidence 367888889999984 455 46888999999884 99999999999999964112366677788888775 76
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 038622 491 PIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVM 538 (587)
Q Consensus 491 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 538 (587)
.++|.+.+++++......++. ..+.+. +.-.+|..+++++-
T Consensus 256 -~~~a~~~L~kAL~a~p~~~P~--~~lan~----~~q~eA~~LL~~~~ 296 (301)
T 3u64_A 256 -RAGFDEALDRALAIDPESVPH--NKLLVI----LSQKRARWLKAHVQ 296 (301)
T ss_dssp -HHHHHHHHHHHHHCCGGGCSS--CHHHHH----HHHHHHHHHHHTHH
T ss_pred -HHHHHHHHHHHHcCCCCCCCC--hhHHHH----HHHHHHHHHHHHhH
Confidence 999999999999844330132 123333 33466777666543
No 225
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.25 E-value=0.0036 Score=45.43 Aligned_cols=65 Identities=8% Similarity=0.084 Sum_probs=37.5
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 038622 439 TPQAYNPVIQALFRRKRTTEAMRLFREMMEKA------DPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLE 504 (587)
Q Consensus 439 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 504 (587)
+......++..+...|++..|...|+.+++.. ..+....+..++.++.+.|+ +++|+.+++++++
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~-~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGD-LDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccC-HHHHHHHHHHHHh
Confidence 34445556666666666666666666665531 02234455566666666666 6666666666665
No 226
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.21 E-value=0.0015 Score=61.57 Aligned_cols=86 Identities=6% Similarity=-0.080 Sum_probs=54.1
Q ss_pred cCChHHHHHHHHHHHHc---CCCCC----hHhHHHHHHHHHhcCCHHHHHHHHHHHHhc-----C-CCCC-HHHHHHHHH
Q 038622 418 AGRVEVASKLLRSIQMK---GIVLT----PQAYNPVIQALFRRKRTTEAMRLFREMMEK-----A-DPPD-ALTYKHVFR 483 (587)
Q Consensus 418 ~~~~~~a~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~-~~~~~~l~~ 483 (587)
.|++++|..++++.++. -+.|+ ..+++.++.+|..+|++++|+.+++++++. | ..|+ ...++.++.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 45677777777666543 11122 145677777777777777777777777652 2 1222 334667777
Q ss_pred HHHhCCCCHHHHHHHHHHHHH
Q 038622 484 GLCNGGGPIGEAVDFVIEMLE 504 (587)
Q Consensus 484 ~~~~~~~~~~~A~~~~~~~~~ 504 (587)
.|..+|+ +++|+.+++++++
T Consensus 391 ~~~~qg~-~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLEN-KAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTC-HHHHHHHHHHHHH
T ss_pred HHHhccC-HHHHHHHHHHHHH
Confidence 7777777 7777777777763
No 227
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.21 E-value=0.25 Score=50.61 Aligned_cols=277 Identities=10% Similarity=-0.011 Sum_probs=144.8
Q ss_pred HHhcCChHHHHHHHHHHHHcC--CCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCC-------CCCHH--HHHHHHH
Q 038622 240 LCLTSNFDVAMELFQEMKTKG--CQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGC-------ARNVV--TYNTLID 308 (587)
Q Consensus 240 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~--~~~~l~~ 308 (587)
....|+.++++.++......+ -.+....-..++-.....|..+++..++...+.... .+... +...++.
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 456678888877777655421 011222223333444555555677777777665321 01111 1223333
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCH
Q 038622 309 GFCKLKRIEEAEEIFDEMEIQGISRNS--VTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDI 386 (587)
Q Consensus 309 ~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 386 (587)
++...++ +++.+.+..+.... .... ..-..++..+.-.|+.+....++..+... ...+..-...+.-++...|+.
T Consensus 464 a~~GS~~-eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~-~~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 464 AAMGSAN-IEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET-QHGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HSTTCCC-HHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCG
T ss_pred HhcCCCC-HHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc-CcHHHHHHHHHHHHhhhCCCh
Confidence 4444444 45555565555432 1111 12223344456677777777777766653 111222223334445577888
Q ss_pred HHHHHHHHHHHHCCCCCCcc--hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHH
Q 038622 387 KRAADIVQNMTSNGCEPDIV--TYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFR 464 (587)
Q Consensus 387 ~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 464 (587)
+.+..+++.+... ..|... ....++-+|+..|+.....++++.+.... ..+..-...++-++...|+.+.+.++++
T Consensus 541 e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~ 618 (963)
T 4ady_A 541 ELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQ 618 (963)
T ss_dssp GGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred HHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence 8888888887763 222222 12334556778888887777888887641 1122222333444455677777777776
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHccC
Q 038622 465 EMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFS----SFYMLAEGLVSLG 525 (587)
Q Consensus 465 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g 525 (587)
.+.+.+ .|....-..+.-.....|....+++..+.++.. +++.. +...|+.+.....
T Consensus 619 ~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~Ig~gtn 679 (963)
T 4ady_A 619 LLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSMILIQQT 679 (963)
T ss_dssp TGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHSTTCC
T ss_pred HHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHHHhcCCc
Confidence 666543 333333223333344455545788898888874 45443 3344555554443
No 228
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.18 E-value=0.0044 Score=46.79 Aligned_cols=105 Identities=12% Similarity=0.058 Sum_probs=65.8
Q ss_pred CCCHHHHHHHHHHHHhcCCh------hHHHHHHHHHHHcCCCCChhhHHHHHHH------HHhcCCHHHHHHHHHHHHHC
Q 038622 52 APDERTFTTLMQGLIEEGNL------DGALRIREQMVEHGCLVTNVTVNVLVHG------FCKEGRIEDALSFIQEMVSE 119 (587)
Q Consensus 52 ~~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~~~~~~~~~l~~~------~~~~~~~~~a~~~~~~~~~~ 119 (587)
+.|+.+|-..+...-+.|+. ++.+++|+++...-+|.....|...+.. +...+++++|.++|+.+++.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 56777777777777777777 7777888877775322222222222221 12336777777777777664
Q ss_pred CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 038622 120 GFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFD 157 (587)
Q Consensus 120 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 157 (587)
.+.-...|...+..-.++|+...|.+++...+..+..
T Consensus 90 -hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 90 -CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp -CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred -hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 2333666777777777777777777777777775443
No 229
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.15 E-value=0.29 Score=50.21 Aligned_cols=260 Identities=10% Similarity=0.038 Sum_probs=138.9
Q ss_pred HHccCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCC--C-----CCHHHHH--HHHH
Q 038622 275 LCSRGMLEEALKLLKEMESSGCARN--VVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGI--S-----RNSVTYN--TLID 343 (587)
Q Consensus 275 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~-----~~~~~~~--~l~~ 343 (587)
....|+.++++..+...+..+...+ ...-..++-+....|...++...+.......- . +....-. .++.
T Consensus 384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl 463 (963)
T 4ady_A 384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL 463 (963)
T ss_dssp HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence 4566777888777776654210122 22223334444555555567777776654321 0 1111112 2223
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHh--hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCCh
Q 038622 344 GLCKSRRVEDAAQLMDQMIMEGLKPDKF--TYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRV 421 (587)
Q Consensus 344 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 421 (587)
++.-.++ +++...+..++... .+... .-..++..+...|+.+....++..+.+.. ..+..-...++-++...|+.
T Consensus 464 a~~GS~~-eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 464 AAMGSAN-IEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HSTTCCC-HHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCG
T ss_pred HhcCCCC-HHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCCh
Confidence 3333444 45666666666532 11111 22234445667788877777877776531 11122223344445578899
Q ss_pred HHHHHHHHHHHHcCCCCChH----hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHH
Q 038622 422 EVASKLLRSIQMKGIVLTPQ----AYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVD 497 (587)
Q Consensus 422 ~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~ 497 (587)
+.+..+++.+... .++. ....++.+|+..|+.....+++..+.... ..+......+.-.+...|+ .+.+.+
T Consensus 541 e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~-~e~v~r 615 (963)
T 4ady_A 541 ELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRD-YTTVPR 615 (963)
T ss_dssp GGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSS-CSSHHH
T ss_pred HHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCC-HHHHHH
Confidence 9999898888763 2332 23456677888999888777998888742 2222222222223344566 555666
Q ss_pred HHHHHHHcCCCCC--HHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCC
Q 038622 498 FVIEMLERGFLPE--FSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSD 545 (587)
Q Consensus 498 ~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 545 (587)
+++.+.+.+ .|. ..+-..||.++...|+ .+|+..+..+.. +++..
T Consensus 616 lv~~L~~~~-d~~VR~gAalALGli~aGn~~-~~aid~L~~L~~-D~d~~ 662 (963)
T 4ady_A 616 IVQLLSKSH-NAHVRCGTAFALGIACAGKGL-QSAIDVLDPLTK-DPVDF 662 (963)
T ss_dssp HTTTGGGCS-CHHHHHHHHHHHHHHTSSSCC-HHHHHHHHHHHT-CSSHH
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHHhccCCCc-HHHHHHHHHHcc-CCCHH
Confidence 666555532 342 2233445555555554 678888888754 44433
No 230
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.05 E-value=0.0047 Score=58.24 Aligned_cols=89 Identities=13% Similarity=0.021 Sum_probs=59.7
Q ss_pred HHhcCChHHHHHHHHHHHHc---CCCCC----hHhHHHHHHHHHhcCCHHHHHHHHHHHHhc-----C-CCCC-HHHHHH
Q 038622 415 LCKAGRVEVASKLLRSIQMK---GIVLT----PQAYNPVIQALFRRKRTTEAMRLFREMMEK-----A-DPPD-ALTYKH 480 (587)
Q Consensus 415 ~~~~~~~~~a~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~-~~~~~~ 480 (587)
+...|++++|...++++++. -+.|+ ..+++.++.+|...|++++|+.+++++++. | ..|+ ...++.
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 44567777777777777654 11222 246677788888888888888888877752 2 1122 345667
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHH
Q 038622 481 VFRGLCNGGGPIGEAVDFVIEMLE 504 (587)
Q Consensus 481 l~~~~~~~~~~~~~A~~~~~~~~~ 504 (587)
++..+..+|+ +++|+.+++++++
T Consensus 377 La~~~~~~g~-~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 377 VGKLQLHQGM-FPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHTTC-HHHHHHHHHHHHH
T ss_pred HHHHHHhcCC-HHHHHHHHHHHHH
Confidence 7777888888 8888888888773
No 231
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.90 E-value=0.0017 Score=47.91 Aligned_cols=88 Identities=15% Similarity=0.120 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhH---HHHHHHHHHhcC-CCC--CchhhhhhhHHHHHHHHHHHH
Q 038622 492 IGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEET---LVELIDMVMDKA-KFS--DRETSMVRGFLKIRKFQDALA 565 (587)
Q Consensus 492 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~A~~ 565 (587)
...+.+.|.+....| .|+..+...+++++.+..+..+ ++.+++.+.+.+ |.. +-.+.++.++++.|+|..|..
T Consensus 17 l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~ 95 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 95 (126)
T ss_dssp HHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence 566777777777655 5899999999999999998877 999999998876 422 457889999999999999999
Q ss_pred hcchhhhccCchhhh
Q 038622 566 TFGDILDSRMPRKTF 580 (587)
Q Consensus 566 ~~~~~~~~~~~~~~~ 580 (587)
+++.+++..|...+.
T Consensus 96 ~~~~lL~~eP~n~QA 110 (126)
T 1nzn_A 96 YVRGLLQTEPQNNQA 110 (126)
T ss_dssp HHHHHHHHCTTCHHH
T ss_pred HHHHHHHhCCCCHHH
Confidence 999999998765544
No 232
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.88 E-value=0.0099 Score=44.92 Aligned_cols=103 Identities=14% Similarity=0.144 Sum_probs=54.2
Q ss_pred ChHhHHHHHHHHHhcCCH------HHHHHHHHHHHhcCCCCCHH-HHHHHHH------HHHhCCCCHHHHHHHHHHHHHc
Q 038622 439 TPQAYNPVIQALFRRKRT------TEAMRLFREMMEKADPPDAL-TYKHVFR------GLCNGGGPIGEAVDFVIEMLER 505 (587)
Q Consensus 439 ~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~~~~~~~A~~~~~~~~~~ 505 (587)
|.++|..++......|++ +..+++|+++... +||+.. .|...+. .+...++ .++|.++|+.+++.
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D-~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQE-PDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHC-GGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHH
Confidence 445555555555555555 5555666666554 344311 1111100 1122244 66677777776653
Q ss_pred CCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC
Q 038622 506 GFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS 544 (587)
Q Consensus 506 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 544 (587)
+ ..=..+|...+..-.++|+...|++++.+++...|.+
T Consensus 90 h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 90 C-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp C-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred h-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 2 1124555555566666777777777777777766655
No 233
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.56 E-value=0.14 Score=40.47 Aligned_cols=102 Identities=12% Similarity=0.125 Sum_probs=51.4
Q ss_pred HHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 038622 28 KALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIE 107 (587)
Q Consensus 28 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 107 (587)
...++.|+++.|.++.+.+ .+...|..++......|+++-|.++|.++.. +..+.-.|.-.|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 3445556666666555544 1445566666666666666666666555432 223444445555555
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 038622 108 DALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDM 150 (587)
Q Consensus 108 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 150 (587)
....+-+.....| -++.....+.-.|+++++.++|.+
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5444444433332 123333444455566665555543
No 234
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.46 E-value=0.071 Score=40.06 Aligned_cols=75 Identities=12% Similarity=0.161 Sum_probs=55.9
Q ss_pred CCCHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCc
Q 038622 472 PPDALTYKHVFRGLCNGGG--PIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDR 546 (587)
Q Consensus 472 ~~~~~~~~~l~~~~~~~~~--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 546 (587)
.|+..+-..+++++.+... +..+++.+++...+.+..-..+.++.|+-.+++.|+|++|+++.+.+++..|.+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 5677777777777777665 14467888888887431124667788888999999999999999999999998743
No 235
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.37 E-value=0.033 Score=41.23 Aligned_cols=73 Identities=12% Similarity=0.190 Sum_probs=59.2
Q ss_pred CCCHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCc
Q 038622 472 PPDALTYKHVFRGLCNGGGP--IGEAVDFVIEMLERGFLP--EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDR 546 (587)
Q Consensus 472 ~~~~~~~~~l~~~~~~~~~~--~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 546 (587)
.|+..+-..+++++.+..+. ..+++.+++...+.+ | ..+.++.|+-.+++.|+|++|+++.+.+++..|.+..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 67777777888888777651 447888999888754 5 4778888999999999999999999999999998743
No 236
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.35 E-value=0.72 Score=43.63 Aligned_cols=169 Identities=17% Similarity=0.143 Sum_probs=97.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC---cchHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCCh----H
Q 038622 373 YNSLLTYYCRAGDIKRAADIVQNMTSN--GCEPD---IVTYGTLIGGLCKAGRVEVASKLLRSIQMK--GIVLTP----Q 441 (587)
Q Consensus 373 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~----~ 441 (587)
...|...+...|++.+|..++..+... +..+. ...+...++.|...+++..|..+++++... ...+++ .
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 345677788888888888888877643 22211 335666677888888888888888887532 111122 3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCHHHH----HHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 038622 442 AYNPVIQALFRRKRTTEAMRLFREMMEK-ADPPDALTY----KHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYM 516 (587)
Q Consensus 442 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~----~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ 516 (587)
.+...+..+...++|.+|.+.|.++.+. ....+...+ ..++....-.+. .++--.++.+.......++...+..
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~-~~~~~~ll~~~~~~~~~~~l~~~~~ 298 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPY-GNLQNDLIHKIQNDNNLKKLESQES 298 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSC-SSTTHHHHHSHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHhhcccccccHHHHH
Confidence 4566777788888998888888887753 111222221 222222222222 2222333333332222245667777
Q ss_pred HHHHHHc--cCCHhHHHHHHHHHHhcCC
Q 038622 517 LAEGLVS--LGKEETLVELIDMVMDKAK 542 (587)
Q Consensus 517 l~~~~~~--~g~~~~A~~~~~~~~~~~~ 542 (587)
+..++.. ..+++.+.+.++..+...+
T Consensus 299 L~k~f~~~~L~~~~~~~~~~~~~L~~~~ 326 (445)
T 4b4t_P 299 LVKLFTTNELMRWPIVQKTYEPVLNEDD 326 (445)
T ss_dssp HHHHHHHCCSSSHHHHHHHTCSSTTTCC
T ss_pred HHHHHHhchHhhhHHHHHHHHHHhcccc
Confidence 8887764 3567777777766555443
No 237
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.33 E-value=0.13 Score=53.62 Aligned_cols=45 Identities=16% Similarity=0.147 Sum_probs=22.8
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 038622 346 CKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNM 396 (587)
Q Consensus 346 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 396 (587)
...|+++.|.++.+. ..+...|..++..+.+.++++.|.+.|.++
T Consensus 663 l~~~~~~~A~~~~~~------~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 663 LKVGQLTLARDLLTD------ESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHTCHHHHHHHHTT------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHh------hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 344555555554322 124445555555555555555555555543
No 238
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.10 E-value=0.38 Score=38.04 Aligned_cols=100 Identities=20% Similarity=0.230 Sum_probs=52.2
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHH
Q 038622 345 LCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVA 424 (587)
Q Consensus 345 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 424 (587)
..+.|+++.|.++.+.+ .+...|..++......|+++-|...|.+... +..+.-.|...|+.+.-
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 34556666666655543 2455566666666666666666666655321 33444445555665555
Q ss_pred HHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHH
Q 038622 425 SKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFRE 465 (587)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 465 (587)
.++-+.....| -++.....+...|++++++++|.+
T Consensus 80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 54444443321 123334444555666666666544
No 239
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.08 E-value=0.16 Score=52.99 Aligned_cols=46 Identities=20% Similarity=0.231 Sum_probs=24.5
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038622 416 CKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMM 467 (587)
Q Consensus 416 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 467 (587)
...|++++|.++.+.+ .+...|..++..+...|+++.|.++|.++.
T Consensus 663 l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 663 LKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 3455555555553221 244555666666666666666666665543
No 240
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.03 E-value=0.026 Score=43.76 Aligned_cols=131 Identities=15% Similarity=0.138 Sum_probs=74.3
Q ss_pred CCCCCc--chHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCC---h----HhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038622 400 GCEPDI--VTYGTLIGGLCKAGRVEVASKLLRSIQMKG-IVLT---P----QAYNPVIQALFRRKRTTEAMRLFREMMEK 469 (587)
Q Consensus 400 ~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~---~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (587)
|+.|.. ..+..-+..+...|.++.|+-+...+.... ..|+ + .++..++.+++..|++..|...|++++..
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 444433 344455666778888888888877765431 1122 1 35667788888888888888888888763
Q ss_pred --CCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC
Q 038622 470 --ADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS 544 (587)
Q Consensus 470 --~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 544 (587)
.++........+. .... ... .....++.+..+.++.||.+.|++++|+..++.++.+...+
T Consensus 93 ~k~l~k~~s~~~~~~----~~ss-~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~ 155 (167)
T 3ffl_A 93 KKALSKTSKVRPSTG----NSAS-TPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTP 155 (167)
T ss_dssp HHCC----------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCH
T ss_pred HHHHhcCCCcccccc----ccCC-Ccc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCH
Confidence 1111111110010 0000 000 01123467788889999999999999999998876655443
No 241
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.86 E-value=0.04 Score=55.23 Aligned_cols=55 Identities=22% Similarity=0.140 Sum_probs=48.1
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHH
Q 038622 481 VFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVM 538 (587)
Q Consensus 481 l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 538 (587)
-...+...|+ ++-|+++.++++. +.| +..+|..|+.+|...|+++.|+-.++.++
T Consensus 343 Qa~FLl~K~~-~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 343 QTNFLLNRGD-YELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHTTC-HHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHHhccCc-HHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 3445667777 9999999999998 567 79999999999999999999999999886
No 242
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=95.51 E-value=0.047 Score=42.35 Aligned_cols=122 Identities=9% Similarity=0.029 Sum_probs=65.4
Q ss_pred CHhhHHHHHHHHHHcCChhhHHHHHHhhccCC-CCCC-------HHHHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCC
Q 038622 19 DVSTFNILIKALCKAHQIRPAILMMEEMPGYG-LAPD-------ERTFTTLMQGLIEEGNLDGALRIREQMVEHG--CLV 88 (587)
Q Consensus 19 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~ 88 (587)
+..++..-++.+...|.++.|+-+...+.... ..++ ..++..++.++...|+|..|...|+++++.. ++.
T Consensus 19 ~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k 98 (167)
T 3ffl_A 19 SHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSK 98 (167)
T ss_dssp --CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhc
Confidence 33455566788888888888888777765431 1222 1256677788888888888888888875431 111
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 038622 89 TNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQ 153 (587)
Q Consensus 89 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 153 (587)
+......+. ....... ......+...-..+..++.+.+++++|+.+++.+..
T Consensus 99 ~~s~~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 99 TSKVRPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp -------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred CCCcccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 111100000 0000000 001123444555577777777777777777766533
No 243
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.20 E-value=0.65 Score=34.42 Aligned_cols=140 Identities=15% Similarity=0.061 Sum_probs=85.3
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHH
Q 038622 381 CRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAM 460 (587)
Q Consensus 381 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 460 (587)
.-.|..++..++..+.... .+..-++.++--....-+-+-..++++.+-+. + |. ...|+.....
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki-F--Di----------s~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY-F--DL----------DKCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-S--CG----------GGCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh-c--Cc----------HhhhcHHHHH
Confidence 4456777777777766653 12333443333333444445555555544432 1 11 1345555555
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCHhHHHHHHHHHHhc
Q 038622 461 RLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKEETLVELIDMVMDK 540 (587)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 540 (587)
..+-.+ ..+.......+..+..+|+ -++-.+++...+.. -.|+++.+..++.+|.+.|+..+|.++++++.+.
T Consensus 82 ~C~~~~-----n~~se~vd~ALd~lv~~~K-kDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 82 ECGVIN-----NTLNEHVNKALDILVIQGK-RDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHT-----TCCCHHHHHHHHHHHHTTC-HHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHh-----cchHHHHHHHHHHHHHhcc-HhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 555443 2334445556667777888 78877787776542 3678888888999999999999999999888887
Q ss_pred CCC
Q 038622 541 AKF 543 (587)
Q Consensus 541 ~~~ 543 (587)
+..
T Consensus 155 G~k 157 (172)
T 1wy6_A 155 GEK 157 (172)
T ss_dssp TCH
T ss_pred hhH
Confidence 754
No 244
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.16 E-value=0.052 Score=54.41 Aligned_cols=58 Identities=16% Similarity=0.174 Sum_probs=50.8
Q ss_pred HHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC-CchhhhhhhHHHHHHHHHHHHhcchh
Q 038622 513 SFYMLAEGLVSLGKEETLVELIDMVMDKAKFS-DRETSMVRGFLKIRKFQDALATFGDI 570 (587)
Q Consensus 513 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~ 570 (587)
.+..-++.+...|+++-|+.+.++++...|.. .+|..|+.+|...|+++.|+-.++..
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34445677888999999999999999999987 77999999999999999999887665
No 245
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=95.03 E-value=0.33 Score=35.97 Aligned_cols=67 Identities=15% Similarity=0.119 Sum_probs=31.8
Q ss_pred CCcchHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038622 403 PDIVTYGTLIGGLCKAGR---VEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEK 469 (587)
Q Consensus 403 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 469 (587)
|+..+-..++.+++++.+ ..+++.+++.+.+.++.-..+.+..++-++.+.|++++|.++.+.+++.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 344444455555554442 2344555555544332112334445555555555555555555555553
No 246
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.97 E-value=0.79 Score=34.50 Aligned_cols=66 Identities=15% Similarity=0.118 Sum_probs=27.1
Q ss_pred CCcchHHHHHHHHHhcCC---hHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038622 403 PDIVTYGTLIGGLCKAGR---VEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMME 468 (587)
Q Consensus 403 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 468 (587)
|+..+-..++++++++.+ ..+++.+++.+...++.-..+-...++-++.+.|++++|.++.+.+++
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 334444444444444332 223444444444432221223333444444444444444444444444
No 247
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.19 E-value=1.2 Score=33.00 Aligned_cols=59 Identities=19% Similarity=0.144 Sum_probs=25.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChHHHHHHHHHHHHCC
Q 038622 236 LIQGLCLTSNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLEEALKLLKEMESSG 295 (587)
Q Consensus 236 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 295 (587)
.+.....+|.-++-.+++..+... .+|++.....++.+|.+.|+..++.+++.++-+.|
T Consensus 97 ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 97 ALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 333344444444444444443221 13444444444444444444444444444444443
No 248
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=93.69 E-value=3.5 Score=36.63 Aligned_cols=22 Identities=14% Similarity=0.188 Sum_probs=14.4
Q ss_pred hhhHHHHHHHHHHHHhcchhhh
Q 038622 551 VRGFLKIRKFQDALATFGDILD 572 (587)
Q Consensus 551 ~~~~~~~~~~~~A~~~~~~~~~ 572 (587)
+..|+-.++...|...+..+.+
T Consensus 194 VL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 194 VLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHH
Confidence 3446677778888776665554
No 249
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=93.28 E-value=1.7 Score=47.07 Aligned_cols=129 Identities=15% Similarity=0.166 Sum_probs=64.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----cccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 038622 128 YNTLVNGLCKVGHVKQALEVMDMMLQEGFDPD----VFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLIS 203 (587)
Q Consensus 128 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 203 (587)
|..++..+-+.+.++.+.+.-..+++...+.+ ...|..+...+...|++++|...+-.+.... .....+..|+.
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~--~r~~cLr~LV~ 979 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP--LKKSCLLDFVN 979 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS--SCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH--HHHHHHHHHHH
Confidence 45555566666666666666555554321111 1135555666666666666666665555432 22334444444
Q ss_pred HHhcc------------CCHHHHHHHHHHHHhC--CCCCCHhhHHHHHHHHHhcCChHHH-HHHHHHHHH
Q 038622 204 TLCKE------------NQVEEATELARVLTSK--GILPDVCTFNSLIQGLCLTSNFDVA-MELFQEMKT 258 (587)
Q Consensus 204 ~~~~~------------~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 258 (587)
..+.. |..++..+++....+. .+...+.-|..|-.-+...|++..| .-+|+.+.+
T Consensus 980 ~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~R 1049 (1139)
T 4fhn_B 980 QLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSR 1049 (1139)
T ss_dssp HHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHH
Confidence 33332 4455555555443221 1121233345455555667777654 445665554
No 250
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=93.27 E-value=7 Score=38.60 Aligned_cols=200 Identities=10% Similarity=0.033 Sum_probs=97.7
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038622 279 GMLEEALKLLKEMESSGCARNVVTY----NTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRRVEDA 354 (587)
Q Consensus 279 ~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 354 (587)
.+.+.|...+....+.. ..+.... ..++......+...++...+...... ..+.....-.+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHH
Confidence 36677777777765432 2222222 22222333344244555555554432 23333333334444566888888
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038622 355 AQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMK 434 (587)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 434 (587)
...|..+.... ........-++.++...|+.++|..+|+.+... . +|..++. ..+.|..-.. ...
T Consensus 305 ~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~----~--~fYg~lA-a~~Lg~~~~~-------~~~ 369 (618)
T 1qsa_A 305 NTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ----R--GFYPMVA-AQRIGEEYEL-------KID 369 (618)
T ss_dssp HHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----C--SHHHHHH-HHHTTCCCCC-------CCC
T ss_pred HHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC----C--ChHHHHH-HHHcCCCCCC-------CCC
Confidence 88777765421 123344455666677778888888888777641 1 2322221 1222321000 000
Q ss_pred CCCCCh------HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 038622 435 GIVLTP------QAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVI 500 (587)
Q Consensus 435 ~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~ 500 (587)
.+.+.. ..-..-+..+...|....|...+..+... .+......+.......|. ++.++....
T Consensus 370 ~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a~~~~~-~~~~v~~~~ 437 (618)
T 1qsa_A 370 KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQW-WDLSVQATI 437 (618)
T ss_dssp CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTC-HHHHHHHHH
T ss_pred CCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCC-hHHHHHHHH
Confidence 000000 01122344566778888888877777653 223333344444455666 666665443
No 251
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=92.71 E-value=4.9 Score=35.41 Aligned_cols=147 Identities=11% Similarity=0.014 Sum_probs=72.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHH----HHHHHhcCCCCCHHHHHHHHHHHHh
Q 038622 412 IGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRL----FREMMEKADPPDALTYKHVFRGLCN 487 (587)
Q Consensus 412 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~----~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (587)
..-|.+++++++|++++..... .+.+.|+...|..+ ++...+.+.+++......++..+..
T Consensus 40 ~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 40 ANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 3335555666666665543322 23333444443333 2222233455555555555544433
Q ss_pred CCCCHHHHHHHHHHHH----HcCCC--CCHHHHHHHHHHHHccCCHhHHHHHHHHH---------------Hhc---CCC
Q 038622 488 GGGPIGEAVDFVIEML----ERGFL--PEFSSFYMLAEGLVSLGKEETLVELIDMV---------------MDK---AKF 543 (587)
Q Consensus 488 ~~~~~~~A~~~~~~~~----~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------------~~~---~~~ 543 (587)
....-..=.+++++++ +.|-. .++.....++..|++.|++.+|+..+=.. .+. +..
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~ 184 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIED 184 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCH
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCc
Confidence 2221112234444444 22211 26777777888888888888777755211 111 211
Q ss_pred CCc---hhhhhhhHHHHHHHHHHHHhcchhhhc
Q 038622 544 SDR---ETSMVRGFLKIRKFQDALATFGDILDS 573 (587)
Q Consensus 544 ~~~---~~~~~~~~~~~~~~~~A~~~~~~~~~~ 573 (587)
.+. ....+..|+-.|+...|...|......
T Consensus 185 ~e~dlf~~RaVL~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 185 STVAEFFSRLVFNYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 111 122233466778888888887776543
No 252
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.30 E-value=7.6 Score=36.62 Aligned_cols=96 Identities=16% Similarity=0.191 Sum_probs=70.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCC---hHhHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCCH----H
Q 038622 408 YGTLIGGLCKAGRVEVASKLLRSIQMK--GIVLT---PQAYNPVIQALFRRKRTTEAMRLFREMMEK--ADPPDA----L 476 (587)
Q Consensus 408 ~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~----~ 476 (587)
...|+..+...|++.+|.+++..+... +.... .+.+...++.|...+++..|..++.++... ..++++ .
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 456888999999999999999998754 22211 245667788899999999999999987542 112222 2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 038622 477 TYKHVFRGLCNGGGPIGEAVDFVIEMLE 504 (587)
Q Consensus 477 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 504 (587)
.+...+..+...++ |.+|-..|..+.+
T Consensus 220 ~~~~~~~~~~~e~~-y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 220 YYNLLVKISLHKRE-YLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHCC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhh-HHHHHHHHHHHHh
Confidence 34556666677777 9999999988875
No 253
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.19 E-value=1.3 Score=41.04 Aligned_cols=78 Identities=9% Similarity=0.024 Sum_probs=51.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----HcCCCCCHHHHHHH
Q 038622 443 YNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEML-----ERGFLPEFSSFYML 517 (587)
Q Consensus 443 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~-----~~~~~p~~~~~~~l 517 (587)
...++..+...|++++|+..+..++... |-+...+..++.++...|+ ..+|.+.|+++. +.|+.|++.+-...
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr-~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDR-QSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 3445666667777777777777777654 5666677777777777777 777777777654 34777776655544
Q ss_pred HHHHH
Q 038622 518 AEGLV 522 (587)
Q Consensus 518 ~~~~~ 522 (587)
-.++.
T Consensus 252 ~~il~ 256 (388)
T 2ff4_A 252 ERILR 256 (388)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 44443
No 254
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.18 E-value=1 Score=48.75 Aligned_cols=85 Identities=12% Similarity=0.035 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CH----HHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCCCchhhh
Q 038622 476 LTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EF----SSFYMLAEGLVSLGKEETLVELIDMVMDKAKFSDRETSM 550 (587)
Q Consensus 476 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 550 (587)
..|..++..+.+.+. ++.++++.+.+++.. .+ +. ..|..+...+...|+|++|...+-..+......+-...+
T Consensus 900 ~YY~hv~~LFe~~~~-~~~vi~fa~lAi~~~-~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESA-YIDALEFSLLADASK-ETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSC-CHHHHHHHHHHHHHC-CSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHHHH
T ss_pred HHHHHHHHHHHHcCC-HHHHHHHHHHHHHhc-cCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 456677777777787 888888888888642 22 22 256677788888899999988888877766666666777
Q ss_pred hhhHHHHHHHHH
Q 038622 551 VRGFLKIRKFQD 562 (587)
Q Consensus 551 ~~~~~~~~~~~~ 562 (587)
+...+..|....
T Consensus 978 V~~lce~~~~~~ 989 (1139)
T 4fhn_B 978 VNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHCCHHH
T ss_pred HHHHHhCCChhh
Confidence 766666655444
No 255
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=92.17 E-value=7 Score=35.90 Aligned_cols=28 Identities=18% Similarity=0.030 Sum_probs=18.8
Q ss_pred HHhHHHHHHHHHccCChHHHHHHHHHHH
Q 038622 265 EFTYNMLIDSLCSRGMLEEALKLLKEME 292 (587)
Q Consensus 265 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 292 (587)
..+...++..|...|+.++..+++....
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~ 46 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTR 46 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3456667777777777777777666553
No 256
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.61 E-value=1.2 Score=41.22 Aligned_cols=72 Identities=13% Similarity=0.088 Sum_probs=49.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCCcccHHH
Q 038622 93 VNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQ-----EGFDPDVFTYNS 165 (587)
Q Consensus 93 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 165 (587)
...++..+...|+++++...+..+.... |-+...|..++.++.+.|+..+|++.|+.+.+ .|+.|+..+-..
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 3445666777777777777777776653 55666777777777888888888777777644 367776655443
No 257
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=89.19 E-value=0.67 Score=39.37 Aligned_cols=123 Identities=12% Similarity=0.000 Sum_probs=82.0
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCH
Q 038622 413 GGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPI 492 (587)
Q Consensus 413 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 492 (587)
....+.|+++++++.+..-++..+. |......++..++-.|+++.|.+-++.+.+. .|+......+... .
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~-------l 74 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRH-------L 74 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHH-------H
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHH-------H
Confidence 3456789999999998888887555 7778888999999999999999999988885 3443322211111 1
Q ss_pred HHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHH--ccCCHhHHHHHHHHHHhcCCCCC
Q 038622 493 GEAVDFVIEMLERGFLP-----EFSSFYMLAEGLV--SLGKEETLVELIDMVMDKAKFSD 545 (587)
Q Consensus 493 ~~A~~~~~~~~~~~~~p-----~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~ 545 (587)
=.|...=.+....+-.| .......+..++. ..|+.++|..+-..+.+..|...
T Consensus 75 I~aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~ 134 (273)
T 1zbp_A 75 VKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKG 134 (273)
T ss_dssp HHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccC
Confidence 12223333333332233 2445555555554 56999999999999998888764
No 258
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=88.67 E-value=12 Score=32.96 Aligned_cols=82 Identities=13% Similarity=0.100 Sum_probs=48.3
Q ss_pred CChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCCCCHHHH
Q 038622 438 LTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNG---GGPIGEAVDFVIEMLERGFLPEFSSF 514 (587)
Q Consensus 438 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~A~~~~~~~~~~~~~p~~~~~ 514 (587)
-++.....++..|.+.|++.+|...|-. +-..+...+..++..+... |. ..++--++-++
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w~~~~~~~~-~~e~dlf~~Ra------------ 194 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDWLCQVDDIE-DSTVAEFFSRL------------ 194 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHTTCCC-HHHHHHHHHHH------------
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHHHHhcCCCC-cchHHHHHHHH------------
Confidence 3667888889999999999888887751 1111344454454444433 33 23322222222
Q ss_pred HHHHHHHHccCCHhHHHHHHHHHHh
Q 038622 515 YMLAEGLVSLGKEETLVELIDMVMD 539 (587)
Q Consensus 515 ~~l~~~~~~~g~~~~A~~~~~~~~~ 539 (587)
+--|.-.|+...|...++...+
T Consensus 195 ---VL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 195 ---VFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp ---HHHHHHTTBHHHHHHHHHHHHH
T ss_pred ---HHHHHHhcCHHHHHHHHHHHHH
Confidence 2235567888888888877653
No 259
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.91 E-value=4.2 Score=28.32 Aligned_cols=46 Identities=17% Similarity=0.229 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 038622 353 DAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTS 398 (587)
Q Consensus 353 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 398 (587)
+..+-++.+....+.|++......+.+|.+.+|+..|+++++-+..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 4445555555555566666666666666666666666666665544
No 260
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=87.76 E-value=23 Score=35.02 Aligned_cols=396 Identities=9% Similarity=0.014 Sum_probs=204.3
Q ss_pred HHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHH--hcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 038622 30 LCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLI--EEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIE 107 (587)
Q Consensus 30 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 107 (587)
..+.|++..+..+...+... +.. .|...-..-. .....++....+++-.. .|.....-...+..+.+.+++.
T Consensus 16 a~~~~~~~~~~~l~~~l~~~--pL~--~yl~y~~l~~~l~~~~~~ev~~Fl~~~~~--~p~~~~Lr~~~l~~l~~~~~w~ 89 (618)
T 1qsa_A 16 AWDNRQMDVVEQMMPGLKDY--PLY--PYLEYRQITDDLMNQPAVTVTNFVRANPT--LPPARTLQSRFVNELARREDWR 89 (618)
T ss_dssp HHHTTCHHHHHHHSGGGTTS--TTH--HHHHHHHHHHTGGGCCHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHCCCHHHHHHHHHhhcCC--CcH--HHHHHHHHHhCcccCCHHHHHHHHHHCCC--ChhHHHHHHHHHHHHHhCCCHH
Confidence 46678888887776665432 222 2222222222 22245544444443221 2333344455566777788887
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHH--HHHHHHH
Q 038622 108 DALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEE--AVEILNQ 185 (587)
Q Consensus 108 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~--a~~~~~~ 185 (587)
..+.++.. .+.+...-.....+....|+..+|....+.+=..| ...+.....++..+.+.|.... ...-++.
T Consensus 90 ~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~ 163 (618)
T 1qsa_A 90 GLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPLAYLERIRL 163 (618)
T ss_dssp HHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 77664432 14455555566777788898877877777765554 3345566677777776664432 2333333
Q ss_pred HHhCCCCCChhhHHHHHHHHhccCCHHHHHHHHHHHHhCC---------CCCCHhh---HHHHHHHHHhcCChHHHHHHH
Q 038622 186 MILRDCSPNTITYNTLISTLCKENQVEEATELARVLTSKG---------ILPDVCT---FNSLIQGLCLTSNFDVAMELF 253 (587)
Q Consensus 186 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~~~~~~---~~~l~~~~~~~~~~~~a~~~~ 253 (587)
+...+ +......++... . .+.......+..+.... ..++... +...+.- ....+.+.|...+
T Consensus 164 al~~~---~~~~a~~l~~~l-~-~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~r-lar~d~~~A~~~~ 237 (618)
T 1qsa_A 164 AMKAG---NTGLVTVLAGQM-P-ADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFAS-VARQDAENARLMI 237 (618)
T ss_dssp HHHTT---CHHHHHHHHHTC-C-GGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHH-HHHHCHHHHHHHH
T ss_pred HHHCC---CHHHHHHHHHhC-C-HHHHHHHHHHHHHHhChHhHHHHHhccCCChhhHHHHHHHHHH-HHhcCHHHHHHHH
Confidence 33332 222222222111 0 01110011111111110 1112211 1111222 2334889999999
Q ss_pred HHHHHcCCCCCHHh----HHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 038622 254 QEMKTKGCQPDEFT----YNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQ 329 (587)
Q Consensus 254 ~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 329 (587)
....... ..+... ...++......+...++...+....... .+.......+....+.|+++.|...|..+...
T Consensus 238 ~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~ 314 (618)
T 1qsa_A 238 PSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPME 314 (618)
T ss_dssp HHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTT
T ss_pred Hhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHcccc
Confidence 8886543 223322 2233333344453556677777765543 44444555555556779999999999887543
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-cc--
Q 038622 330 GISRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPD-IV-- 406 (587)
Q Consensus 330 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~-- 406 (587)
. ........-+..++...|+.++|..+|..+... . +|..++. ..+.|..... ....+.+. ..
T Consensus 315 ~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~----~--~fYg~lA-a~~Lg~~~~~-------~~~~~~~~~~~~~ 379 (618)
T 1qsa_A 315 A-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ----R--GFYPMVA-AQRIGEEYEL-------KIDKAPQNVDSAL 379 (618)
T ss_dssp G-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----C--SHHHHHH-HHHTTCCCCC-------CCCCCCSCCCCHH
T ss_pred c-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC----C--ChHHHHH-HHHcCCCCCC-------CCCCCChhHHhhh
Confidence 2 123444455677888899999999999998752 1 2333321 2233321000 00001110 00
Q ss_pred ---hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHH
Q 038622 407 ---TYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFR 464 (587)
Q Consensus 407 ---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 464 (587)
.....+..+...|....|...+..+... .+......++......|.++.++....
T Consensus 380 ~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~a~~~~~~~~~v~~~~ 437 (618)
T 1qsa_A 380 TQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQATI 437 (618)
T ss_dssp HHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccChHHHHHHHHHHCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 1123345567788888888888877763 233333455555666777776665443
No 261
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=87.74 E-value=5.4 Score=27.80 Aligned_cols=50 Identities=10% Similarity=0.102 Sum_probs=33.0
Q ss_pred CHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 038622 385 DIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMK 434 (587)
Q Consensus 385 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 434 (587)
|.-+..+-++.+...++.|++.+....+++|.+.+++..|.++++-+..+
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34455555666666666677777777777777777777777777766655
No 262
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.89 E-value=2.6 Score=39.60 Aligned_cols=97 Identities=13% Similarity=0.024 Sum_probs=46.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCChHhH----H
Q 038622 372 TYNSLLTYYCRAGDIKRAADIVQNMTSN--GCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMK-GIVLTPQAY----N 444 (587)
Q Consensus 372 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~----~ 444 (587)
+...++..|.+.|+++.|.+.+.++... +...-...+...++.+...+++..+...+.++... .-.+++... .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 3444555555555555555555555543 11112334455555555566666666666555432 011111111 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 038622 445 PVIQALFRRKRTTEAMRLFREMME 468 (587)
Q Consensus 445 ~l~~~~~~~g~~~~A~~~~~~~~~ 468 (587)
..+..+...+++.+|.+.|-++..
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhc
Confidence 222333455666666666666554
No 263
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=86.20 E-value=18 Score=32.20 Aligned_cols=83 Identities=5% Similarity=-0.068 Sum_probs=49.6
Q ss_pred CCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 038622 437 VLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYM 516 (587)
Q Consensus 437 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ 516 (587)
.-++.....++..|.+.+++.+|...|- + |-.+....+..++..+...+. ..++--++-+
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~-~~e~dlfiaR--------------- 192 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDE-SHTAPLYCAR--------------- 192 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSC-GGGHHHHHHH---------------
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcC-CccHHHHHHH---------------
Confidence 3467778888999999999999888773 2 223333555555555544443 2222222222
Q ss_pred HHHHHHccCCHhHHHHHHHHHHh
Q 038622 517 LAEGLVSLGKEETLVELIDMVMD 539 (587)
Q Consensus 517 l~~~~~~~g~~~~A~~~~~~~~~ 539 (587)
.+--|.-.|+...|...++...+
T Consensus 193 aVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 193 AVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH
Confidence 22235667788888887666553
No 264
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=86.10 E-value=15 Score=31.30 Aligned_cols=53 Identities=19% Similarity=0.237 Sum_probs=29.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038622 380 YCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQM 433 (587)
Q Consensus 380 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 433 (587)
..+.|++++++.....-++..+. |...-..+...++-.|+++.|.+-++...+
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34455666666666555554332 444455555566666666666666655555
No 265
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.36 E-value=7.6 Score=36.45 Aligned_cols=98 Identities=10% Similarity=-0.066 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCChhh--H
Q 038622 56 RTFTTLMQGLIEEGNLDGALRIREQMVEHGC--LVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSE---GFNPDQFT--Y 128 (587)
Q Consensus 56 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~--~ 128 (587)
.+...++..|.+.|+++.|.+.+.++..... ......+..+++.+...+++..+...+.++... +..|+... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 3567778888888888888888888876432 223456677778888888888888888877542 21222211 1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHh
Q 038622 129 NTLVNGLCKVGHVKQALEVMDMMLQ 153 (587)
Q Consensus 129 ~~l~~~~~~~~~~~~a~~~~~~~~~ 153 (587)
..-+..+...+++..|...|-++..
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 1122334466888888888777654
No 266
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=84.43 E-value=10 Score=30.69 Aligned_cols=53 Identities=9% Similarity=-0.044 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC
Q 038622 492 IGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS 544 (587)
Q Consensus 492 ~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 544 (587)
..++.++|.-+...|+.. -...|...+..+...|++.+|..+|+..++..-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 556777777777666555 35555666777777777777777777777665444
No 267
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=83.33 E-value=12 Score=27.79 Aligned_cols=41 Identities=7% Similarity=0.138 Sum_probs=18.0
Q ss_pred HHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038622 393 VQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQM 433 (587)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 433 (587)
++.+...++.|++.+....+++|.+.+|+..|..+|+-+..
T Consensus 76 lN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~ 116 (152)
T 2y69_E 76 MNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 116 (152)
T ss_dssp HHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 33333334444444444444444444444444444444433
No 268
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=82.12 E-value=9.4 Score=28.32 Aligned_cols=59 Identities=19% Similarity=0.258 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHH
Q 038622 353 DAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLI 412 (587)
Q Consensus 353 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 412 (587)
+..+-++.+....+.|++......+.+|.+.+|+..|+++++-+... ..+...+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 45556666666677788888888888888888888888888877654 233344565544
No 269
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=76.98 E-value=28 Score=28.16 Aligned_cols=53 Identities=8% Similarity=0.014 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 038622 71 LDGALRIREQMVEHGCLV-TNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNP 123 (587)
Q Consensus 71 ~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 123 (587)
..++..+|..+...++-. -...|...+..+-..|++.+|..+|+.-++.+..|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 445555666555554422 22334455555555566666666666555554333
No 270
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.43 E-value=32 Score=32.76 Aligned_cols=65 Identities=9% Similarity=0.084 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038622 55 ERTFTTLMQGLIEEGNLDGALRIREQMVEHGC-LVT---NVTVNVLVHGFCKEGRIEDALSFIQEMVSE 119 (587)
Q Consensus 55 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 119 (587)
..+++.+++.|...+.++.|..+..+..--.. ..+ ...+..++..+...+++.+|.+.+..+.+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 44555666666666666666666655531100 000 112334555666666666666666665543
No 271
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=75.40 E-value=50 Score=30.32 Aligned_cols=93 Identities=9% Similarity=-0.108 Sum_probs=49.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHhhHH---
Q 038622 305 TLIDGFCKLKRIEEAEEIFDEMEIQGISRN-----SVTYNTLIDGLCKSRRVEDAAQLMDQMIME--GLKPDKFTYN--- 374 (587)
Q Consensus 305 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~--- 374 (587)
.++..|...|++.+|..++..+...-...+ ..++...+..|...+++.++...+.++... .+.+++....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 456666666777777666666544211111 123444455666777777777777666542 1223332211
Q ss_pred -HHHHHHH-hcCCHHHHHHHHHHHH
Q 038622 375 -SLLTYYC-RAGDIKRAADIVQNMT 397 (587)
Q Consensus 375 -~l~~~~~-~~~~~~~A~~~~~~~~ 397 (587)
.-+..+. ..++|..|...|-+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHH
Confidence 1223345 5677777776665554
No 272
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=73.73 E-value=28 Score=26.66 Aligned_cols=69 Identities=9% Similarity=0.054 Sum_probs=47.5
Q ss_pred CCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC
Q 038622 472 PPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS 544 (587)
Q Consensus 472 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 544 (587)
..|...+...+ .|.... +++.++|.-+...|+.. -...|...+..+...|++.+|..+|+..++.+-.|
T Consensus 65 knD~RyLklWl-~ya~~~---~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 65 HNDPRFISYCL-KFAEYN---SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp TTCHHHHHHHH-HHHTTB---SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHH-HHHHhc---CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 44555444333 233332 34788888888777765 46677788888888888888888888888876555
No 273
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=73.40 E-value=30 Score=26.92 Aligned_cols=69 Identities=10% Similarity=-0.019 Sum_probs=45.5
Q ss_pred CCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC
Q 038622 472 PPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS 544 (587)
Q Consensus 472 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 544 (587)
..|...+...+. |.... +.+.++|..+...|+.. -...|...+..+...|++.+|.++|+..++..-.|
T Consensus 60 knD~RyLklWl~-ya~~~---~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 60 YSDPRFLNLWLK-LGRLC---NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp TTCHHHHHHHHH-HHHHC---SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccCHHHHHHHHH-HHHhc---CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 445554443332 33322 34667788888777665 46666778888888888888888888888877554
No 274
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=63.76 E-value=44 Score=27.53 Aligned_cols=69 Identities=13% Similarity=-0.042 Sum_probs=49.3
Q ss_pred CCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHccCCHhHHHHHHHHHHhcCCCC
Q 038622 472 PPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLP-EFSSFYMLAEGLVSLGKEETLVELIDMVMDKAKFS 544 (587)
Q Consensus 472 ~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 544 (587)
..|...+...+ .|... .+++..+|.-+...|+.- -...|...+..+...|++.+|..+|+..++..-.+
T Consensus 114 knD~RyLklWl-~Ya~~---~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 114 KDDVRYLRIWM-QYVNY---IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp TTCHHHHHHHH-HHHTT---CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred cCCHHHHHHHH-HHHHc---cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 44555444333 23332 356778888888887766 46677788888889999999999999988877655
No 275
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=62.33 E-value=61 Score=26.24 Aligned_cols=171 Identities=14% Similarity=0.089 Sum_probs=81.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 038622 53 PDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLV 132 (587)
Q Consensus 53 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 132 (587)
+++..-...+..+...|.. .+...+..+... ++..+....+.++...++.+ +...+..++. .++..+-...+
T Consensus 31 ~~~~vR~~A~~~L~~~~~~-~~~~~L~~~l~~---~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~ 102 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDE-RAVEPLIKALKD---EDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAA 102 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCG-GGHHHHHHHTTC---SCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCc-cHHHHHHHHHcC---CCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHH
Confidence 4555555555555555553 333333334332 24444445555555555532 3333334433 34555555556
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCHH
Q 038622 133 NGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQVE 212 (587)
Q Consensus 133 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 212 (587)
.++.+.++. ++...+..+.. .++..+-...+.++...|+.+ +...+..+.. .++.......+.++...+. .
T Consensus 103 ~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~ 173 (211)
T 3ltm_A 103 VALGQIGDE-RAVEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG-E 173 (211)
T ss_dssp HHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-H
T ss_pred HHHHHhCcH-HHHHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-h
Confidence 666666653 33444444443 345555555555555555532 3444444442 2345555555555555555 3
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 038622 213 EATELARVLTSKGILPDVCTFNSLIQGLCLT 243 (587)
Q Consensus 213 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 243 (587)
++...+..+... ++...-.....++...
T Consensus 174 ~~~~~L~~~l~d---~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 174 RVRAAMEKLAET---GTGFARKVAVNYLETH 201 (211)
T ss_dssp HHHHHHHHHHHH---CCHHHHHHHHHHHHC-
T ss_pred hHHHHHHHHHhC---CCHHHHHHHHHHHHhc
Confidence 444445555442 2444444444444433
No 276
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=61.12 E-value=79 Score=27.10 Aligned_cols=222 Identities=11% Similarity=0.060 Sum_probs=90.7
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----HHHHHHHHHHHHHcCCCCCHhhH
Q 038622 298 RNVVTYNTLIDGFCKLKRIEEAEEIFDEMEIQGISRNSVTYNTLIDGLCKSRR----VEDAAQLMDQMIMEGLKPDKFTY 373 (587)
Q Consensus 298 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~A~~~~~~~~~~~~~~~~~~~ 373 (587)
++...-...+.++...+. ..+...+..+.. .++...-...+.++...+. ......++...... .++..+-
T Consensus 35 ~~~~vr~~A~~~L~~~~~-~~~~~~L~~~l~---d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~--d~~~~vr 108 (280)
T 1oyz_A 35 HNSLKRISSARVLQLRGG-QDAVRLAIEFCS---DKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALN--DKSACVR 108 (280)
T ss_dssp SSHHHHHHHHHHHHHHCC-HHHHHHHHHHHT---CSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHH--CSCHHHH
T ss_pred CCHHHHHHHHHHHHccCC-chHHHHHHHHHc---CCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc--CCCHHHH
Confidence 444444445555555554 334444444443 2344444444445544442 22222333322111 2344444
Q ss_pred HHHHHHHHhcCC-----HHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHH
Q 038622 374 NSLLTYYCRAGD-----IKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQ 448 (587)
Q Consensus 374 ~~l~~~~~~~~~-----~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 448 (587)
...+.++...+. ...+...+..+.. .++...-...+.++...|+.+ +...+..+.. .++.......+.
T Consensus 109 ~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~---d~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~ 181 (280)
T 1oyz_A 109 ATAIESTAQRCKKNPIYSPKIVEQSQITAF---DKSTNVRRATAFAISVINDKA-TIPLLINLLK---DPNGDVRNWAAF 181 (280)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHTT---CSCHHHHHHHHHHHHTC---C-CHHHHHHHHT---CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCcccHHHHHHHHHHhh---CCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHc---CCCHHHHHHHHH
Confidence 444444443331 2233333333332 234444444455555554422 3333333333 234433334444
Q ss_pred HHHhcC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHccCCH
Q 038622 449 ALFRRK-RTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLERGFLPEFSSFYMLAEGLVSLGKE 527 (587)
Q Consensus 449 ~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 527 (587)
++...| ....+...+..++. .++...-...+.++...|. +.+...+..+++. |+ +....+.++.+.|.
T Consensus 182 aL~~~~~~~~~~~~~L~~~l~---d~~~~vR~~A~~aL~~~~~--~~~~~~L~~~l~d---~~--vr~~a~~aL~~i~~- 250 (280)
T 1oyz_A 182 AININKYDNSDIRDCFVEMLQ---DKNEEVRIEAIIGLSYRKD--KRVLSVLCDELKK---NT--VYDDIIEAAGELGD- 250 (280)
T ss_dssp HHHHHTCCCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHTTC--GGGHHHHHHHHTS---SS--CCHHHHHHHHHHCC-
T ss_pred HHHhhccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhCC--HhhHHHHHHHhcC---cc--HHHHHHHHHHhcCc-
Confidence 444433 22344444444443 2344444445555555554 4455555555532 22 11222333333444
Q ss_pred hHHHHHHHHHHhcCCC
Q 038622 528 ETLVELIDMVMDKAKF 543 (587)
Q Consensus 528 ~~A~~~~~~~~~~~~~ 543 (587)
.++...+.++++..++
T Consensus 251 ~~~~~~L~~~l~~~~~ 266 (280)
T 1oyz_A 251 KTLLPVLDTMLYKFDD 266 (280)
T ss_dssp GGGHHHHHHHHTTSSC
T ss_pred hhhhHHHHHHHhcCCC
Confidence 3455555555554443
No 277
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=60.71 E-value=88 Score=27.53 Aligned_cols=20 Identities=20% Similarity=0.084 Sum_probs=11.4
Q ss_pred HHHhCCCCHHHHHHHHHHHHH
Q 038622 484 GLCNGGGPIGEAVDFVIEMLE 504 (587)
Q Consensus 484 ~~~~~~~~~~~A~~~~~~~~~ 504 (587)
..++.++ +..|..+.+++++
T Consensus 216 ~a~K~KN-y~tAa~fArrLLe 235 (325)
T 3mv2_A 216 QHFKHKN-FLQASYFAGEFLK 235 (325)
T ss_dssp HHHHTTC-HHHHHHHHHHHHT
T ss_pred HHHHhhh-HHHHHHHHHHHHh
Confidence 3445555 6666666666665
No 278
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=60.64 E-value=36 Score=32.41 Aligned_cols=60 Identities=10% Similarity=0.117 Sum_probs=36.8
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 038622 441 QAYNPVIQALFRRKRTTEAMRLFREMMEKADPPD-------ALTYKHVFRGLCNGGGPIGEAVDFVIEMLE 504 (587)
Q Consensus 441 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 504 (587)
..++.+++.|...+.++.|..+..+.. +|.. ...+..++......++ |.+|.+.+..+++
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~---fP~~~~sn~q~~rY~YY~GRI~a~q~~-Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLE---YPHTDVSSSLEARYFFYLSKINAIQLD-YSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHC---SCTTTSCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCc---CCcccCCHHHHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHH
Confidence 456677777777777777777777664 2221 1112234555566666 7777777777765
No 279
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=59.43 E-value=57 Score=24.96 Aligned_cols=50 Identities=18% Similarity=0.237 Sum_probs=32.8
Q ss_pred HHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 038622 109 ALSFIQEMVSEGFNPD-QFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDP 158 (587)
Q Consensus 109 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 158 (587)
+..+|..|...|+-.. +..|...+..+-..|++.+|.++|+..++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 6667777766654333 3446667777777777777777777777764444
No 280
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=58.34 E-value=64 Score=25.19 Aligned_cols=79 Identities=16% Similarity=0.024 Sum_probs=41.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCcchHHHH-HHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHH
Q 038622 380 YCRAGDIKRAADIVQNMTSNGCEPDIVTYGTL-IGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTE 458 (587)
Q Consensus 380 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 458 (587)
+.+-.+++.+.-+-.-+.. +..-|..+ .-.+.-.|.+..++-++. .. . +..+...-.-+|....++..
T Consensus 12 s~kY~dYdt~~fLsa~L~~-----~~~eY~lL~~I~LyyngEY~R~Lf~L~---~l--N-T~Ts~YYk~LCy~klKdYkk 80 (242)
T 3kae_A 12 SIRYRDYETAIFLAACLLP-----CKPEYRMLMSIVLYLNGEYTRALFHLH---KL--N-TCTSKYYESLCYKKKKDYKK 80 (242)
T ss_dssp HHHTTCHHHHHHHHHHHC---------CTHHHHHHHHHHTTCHHHHHHHHH---TC--C-BHHHHHHHHHHHHHTTCHHH
T ss_pred HhhcccccHHHHHHHHHcc-----CChHHHhhhhhhhhhcchHhHHHHHHH---hc--c-hHHHHHHHHHHHHHHHHHHH
Confidence 3455566666544333332 22223333 223445677777765542 21 1 22333333445677788888
Q ss_pred HHHHHHHHHhc
Q 038622 459 AMRLFREMMEK 469 (587)
Q Consensus 459 A~~~~~~~~~~ 469 (587)
|+..++.++..
T Consensus 81 A~~~le~il~~ 91 (242)
T 3kae_A 81 AIKSLESILEG 91 (242)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhc
Confidence 88888888854
No 281
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=56.33 E-value=95 Score=26.55 Aligned_cols=218 Identities=11% Similarity=0.078 Sum_probs=98.3
Q ss_pred CCHHhHHHHHHHHHccCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC----HHHHHHHHHHHHHcCCCCCHHHH
Q 038622 263 PDEFTYNMLIDSLCSRGMLEEALKLLKEMESSGCARNVVTYNTLIDGFCKLKR----IEEAEEIFDEMEIQGISRNSVTY 338 (587)
Q Consensus 263 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~a~~~~~~~~~~~~~~~~~~~ 338 (587)
++...-...+..+...+. ..+...+..+... ++...-...+.++...|. ......++...... .++...-
T Consensus 35 ~~~~vr~~A~~~L~~~~~-~~~~~~L~~~l~d---~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~--d~~~~vr 108 (280)
T 1oyz_A 35 HNSLKRISSARVLQLRGG-QDAVRLAIEFCSD---KNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALN--DKSACVR 108 (280)
T ss_dssp SSHHHHHHHHHHHHHHCC-HHHHHHHHHHHTC---SSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHH--CSCHHHH
T ss_pred CCHHHHHHHHHHHHccCC-chHHHHHHHHHcC---CCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhc--CCCHHHH
Confidence 455544445555555553 3344444444442 444444445555555553 22233333322112 2344444
Q ss_pred HHHHHHHHhcCC-----HHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHH
Q 038622 339 NTLIDGLCKSRR-----VEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIG 413 (587)
Q Consensus 339 ~~l~~~~~~~~~-----~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 413 (587)
...+.++...+. ...+...+..+.. .++..+-...+.+....++. .+...+..+.. .++...-...+.
T Consensus 109 ~~a~~aL~~l~~~~~~~~~~~~~~L~~~l~---d~~~~vR~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~~ 181 (280)
T 1oyz_A 109 ATAIESTAQRCKKNPIYSPKIVEQSQITAF---DKSTNVRRATAFAISVINDK-ATIPLLINLLK---DPNGDVRNWAAF 181 (280)
T ss_dssp HHHHHHHHHHHHHCGGGHHHHHHHHHHHTT---CSCHHHHHHHHHHHHTC----CCHHHHHHHHT---CSSHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCcccHHHHHHHHHHhh---CCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHc---CCCHHHHHHHHH
Confidence 444444444331 2334444444433 35555555556666666553 24444444443 234443344444
Q ss_pred HHHhcC-ChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCH
Q 038622 414 GLCKAG-RVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPI 492 (587)
Q Consensus 414 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 492 (587)
++...+ +...+...+..+.. .++.......+.++...|+. .+...+...+.. ++ .-...+.++...|.
T Consensus 182 aL~~~~~~~~~~~~~L~~~l~---d~~~~vR~~A~~aL~~~~~~-~~~~~L~~~l~d---~~--vr~~a~~aL~~i~~-- 250 (280)
T 1oyz_A 182 AININKYDNSDIRDCFVEMLQ---DKNEEVRIEAIIGLSYRKDK-RVLSVLCDELKK---NT--VYDDIIEAAGELGD-- 250 (280)
T ss_dssp HHHHHTCCCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHTTCG-GGHHHHHHHHTS---SS--CCHHHHHHHHHHCC--
T ss_pred HHHhhccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHhCCH-hhHHHHHHHhcC---cc--HHHHHHHHHHhcCc--
Confidence 444433 23444444444443 23555555566666666643 344444444432 22 11233444445554
Q ss_pred HHHHHHHHHHHH
Q 038622 493 GEAVDFVIEMLE 504 (587)
Q Consensus 493 ~~A~~~~~~~~~ 504 (587)
.++...+.++++
T Consensus 251 ~~~~~~L~~~l~ 262 (280)
T 1oyz_A 251 KTLLPVLDTMLY 262 (280)
T ss_dssp GGGHHHHHHHHT
T ss_pred hhhhHHHHHHHh
Confidence 456666666654
No 282
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=54.90 E-value=84 Score=29.39 Aligned_cols=32 Identities=25% Similarity=0.406 Sum_probs=18.1
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 038622 50 GLAPDERTFTTLMQGLIEEGNLDGALRIREQM 81 (587)
Q Consensus 50 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 81 (587)
|++--...|..-...+...|+|++|.++.-..
T Consensus 356 ~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~s 387 (494)
T 1bpo_A 356 NLAGAEELFARKFNALFAQGNYSEAAKVAANA 387 (494)
T ss_dssp TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred CCccHHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 44444555555566666666666666554433
No 283
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=52.87 E-value=79 Score=24.58 Aligned_cols=47 Identities=11% Similarity=0.131 Sum_probs=21.5
Q ss_pred HHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 038622 109 ALSFIQEMVSEGFNPD-QFTYNTLVNGLCKVGHVKQALEVMDMMLQEG 155 (587)
Q Consensus 109 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 155 (587)
...+|..|...|+-.. +..|...+..+-..|++.+|.++|...++.+
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~ 126 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQK 126 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 3344444444433222 2234444444555555555555555555543
No 284
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=52.57 E-value=1.5e+02 Score=27.75 Aligned_cols=133 Identities=15% Similarity=0.115 Sum_probs=87.0
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC
Q 038622 10 DMVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVT 89 (587)
Q Consensus 10 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 89 (587)
-..+.|+|-....|..-.+.+...|++++|.++-...++ |+-.++.+...+-..-..-|+..-.+.+|..+.+.+ ..+
T Consensus 351 lA~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-giLRt~~Ti~rFk~vp~~pgq~splL~YF~~Ll~~g-~Ln 428 (494)
T 1bpo_A 351 MAVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-GILRTPDTIRRFQSVPAQPGQTSPLLQYFGILLDQG-QLN 428 (494)
T ss_dssp HHHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-GSSCSHHHHHHHTTSCCCTTSCCHHHHHHHHHHHHS-CCC
T ss_pred HHHhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-ccccCHHHHHHHhcCCCCCCCCCHHHHHHHHHhccC-ccc
Confidence 344677777777888888999999999999998887765 335677777666555555677778888888888876 455
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 038622 90 NVTVNVLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMML 152 (587)
Q Consensus 90 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 152 (587)
...-..+++....+|+.+-...++.+ ..+..+.. |+... +..+..-|+.+|.++.
T Consensus 429 ~~ESlEl~r~vL~q~r~~llekWl~e---~KL~~SEe----LGDlv-k~~d~~LAl~IY~~a~ 483 (494)
T 1bpo_A 429 KYESLELCRPVLQQGRKQLLEKWLKE---DKLECSEE----LGDLV-KSVDPTLALSVYLRAN 483 (494)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH---TCSCCCHH----HHHHH-HHHCSHHHHHHHHHHC
T ss_pred hHHhhHHhHHHHhccHHHHHHHHHhc---CCccccHH----hHhhh-hhcCHHHHHHHHHHcC
Confidence 55555667777777776655554432 22233322 22221 3345666666666553
No 285
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=48.81 E-value=35 Score=22.84 Aligned_cols=17 Identities=12% Similarity=0.102 Sum_probs=9.0
Q ss_pred HccCCHhHHHHHHHHHH
Q 038622 522 VSLGKEETLVELIDMVM 538 (587)
Q Consensus 522 ~~~g~~~~A~~~~~~~~ 538 (587)
-+.|++++|+.+|..++
T Consensus 30 D~~g~y~eAl~lY~~ai 46 (83)
T 2w2u_A 30 DKEGNAEEAITNYKKAI 46 (83)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHH
Confidence 44555555555555443
No 286
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=48.47 E-value=1e+02 Score=25.35 Aligned_cols=50 Identities=12% Similarity=0.122 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 038622 108 DALSFIQEMVSEGFNPD-QFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFD 157 (587)
Q Consensus 108 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 157 (587)
....+|..|...|+-.. ...|...+..+-..|++.+|.++|+..++.+-.
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~ 182 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAK 182 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCB
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Confidence 44556666655544322 334555666666666666666666666655433
No 287
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=48.42 E-value=1.1e+02 Score=24.75 Aligned_cols=121 Identities=17% Similarity=0.137 Sum_probs=47.6
Q ss_pred ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 038622 124 DQFTYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLIS 203 (587)
Q Consensus 124 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 203 (587)
+...-...+.++...++. .+...+..+.. .++..+-...+.++...|+.+ +...+..+.. .++.......+.
T Consensus 63 ~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~ 134 (211)
T 3ltm_A 63 DAWVRRAAADALGQIGDE-RAVEPLIKALK---DEDGWVRQSAAVALGQIGDER-AVEPLIKALK---DEDWFVRIAAAF 134 (211)
T ss_dssp CHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCcHH-HHHHHHHHHh---CCCHHHHHHHHH
Confidence 444444444444444442 23333333332 234444444444444444432 2233333332 224444444444
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 038622 204 TLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTSNFDVAMELFQEMK 257 (587)
Q Consensus 204 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 257 (587)
++...++.+ +...+..+.. .++...-...+.++...++ ..+...+..+.
T Consensus 135 aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l 183 (211)
T 3ltm_A 135 ALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALGEIGG-ERVRAAMEKLA 183 (211)
T ss_dssp HHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred HHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHHhCc-hhHHHHHHHHH
Confidence 444444432 3333333332 2244444444444444444 23333444443
No 288
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=47.87 E-value=85 Score=26.27 Aligned_cols=24 Identities=8% Similarity=0.023 Sum_probs=17.6
Q ss_pred HHHHHHHHcCChhhHHHHHHhhcc
Q 038622 25 ILIKALCKAHQIRPAILMMEEMPG 48 (587)
Q Consensus 25 ~l~~~~~~~~~~~~A~~~~~~~~~ 48 (587)
--++.+....++++|+.++++..+
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 446777888888888888776653
No 289
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=47.65 E-value=2.3e+02 Score=29.85 Aligned_cols=48 Identities=19% Similarity=0.123 Sum_probs=33.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCc----ccHHHHHHHHHhcC
Q 038622 127 TYNTLVNGLCKVGHVKQALEVMDMMLQEGFDPDV----FTYNSLISGLCKLG 174 (587)
Q Consensus 127 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g 174 (587)
-|..++..+-+.+-++.+.++-+.+++.-.+.|. ..+..+..+.+..|
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 5778888888999999999888888875222222 35666677666554
No 290
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=46.14 E-value=40 Score=22.54 Aligned_cols=17 Identities=18% Similarity=0.173 Sum_probs=8.9
Q ss_pred HccCCHhHHHHHHHHHH
Q 038622 522 VSLGKEETLVELIDMVM 538 (587)
Q Consensus 522 ~~~g~~~~A~~~~~~~~ 538 (587)
-+.|++++|+.+|..++
T Consensus 22 D~~g~y~eAl~lY~~ai 38 (83)
T 2v6y_A 22 DKEGKVEDAITYYKKAI 38 (83)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHH
Confidence 44555555555554443
No 291
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=45.01 E-value=1.4e+02 Score=25.26 Aligned_cols=61 Identities=11% Similarity=0.062 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh-cCCHHHHHHHHHHHH
Q 038622 337 TYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCR-AGDIKRAADIVQNMT 397 (587)
Q Consensus 337 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~ 397 (587)
....++....+.+++++.....+++...+...+..--+.|-.+|-. .|....+.+++..+.
T Consensus 33 ~lv~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRiissie 94 (261)
T 3ubw_A 33 DLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIE 94 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHHhHHH
Confidence 3344556666778888888887777776666666555555555432 233444555554443
No 292
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=43.91 E-value=42 Score=22.82 Aligned_cols=26 Identities=19% Similarity=0.110 Sum_probs=17.6
Q ss_pred HHHHHHHHHHccCCHhHHHHHHHHHH
Q 038622 513 SFYMLAEGLVSLGKEETLVELIDMVM 538 (587)
Q Consensus 513 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 538 (587)
.+...+..+.+.|+|++|++..+++.
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 44566777777888888876655544
No 293
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=42.54 E-value=1.9e+02 Score=27.52 Aligned_cols=79 Identities=11% Similarity=-0.078 Sum_probs=59.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHH
Q 038622 372 TYNSLLTYYCRAGDIKRAADIVQNMTSNGCEPDIVTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALF 451 (587)
Q Consensus 372 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 451 (587)
.+..++........+..|...|..+....+. +...|+.|+-.....|+.-.|.-.|-+.... ..|-+.+..++...+.
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~-~G~~~nqLavla~~~~~~l~a~y~y~rsl~~-~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAV-KFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS-SBCCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCC-CCchHHHHHHHHhcccccHHHHHHHHHHHhc-CCCChhHHHHHHHHHH
Confidence 4555666667777889999999999886443 6778999999888889888888888777765 3556777777776655
Q ss_pred h
Q 038622 452 R 452 (587)
Q Consensus 452 ~ 452 (587)
+
T Consensus 232 ~ 232 (497)
T 1ya0_A 232 K 232 (497)
T ss_dssp H
T ss_pred H
Confidence 4
No 294
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=42.52 E-value=1.6e+02 Score=28.08 Aligned_cols=79 Identities=10% Similarity=-0.025 Sum_probs=62.4
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 038622 406 VTYGTLIGGLCKAGRVEVASKLLRSIQMKGIVLTPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGL 485 (587)
Q Consensus 406 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 485 (587)
..+..|++.......++.|..+|.++....+. +...|+.++-.....|+.-+|.-.|-+.+... .|-.....++...+
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~-~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~-~Pf~~a~~nL~~~f 230 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCC-CCchHHHHHHHHhcccccHHHHHHHHHHHhcC-CCChhHHHHHHHHH
Confidence 35566777777788899999999999997444 56899999999999999999999988888764 66666666666655
Q ss_pred H
Q 038622 486 C 486 (587)
Q Consensus 486 ~ 486 (587)
.
T Consensus 231 ~ 231 (497)
T 1ya0_A 231 S 231 (497)
T ss_dssp H
T ss_pred H
Confidence 4
No 295
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=42.14 E-value=86 Score=21.88 Aligned_cols=88 Identities=14% Similarity=0.045 Sum_probs=55.9
Q ss_pred cCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 038622 33 AHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSF 112 (587)
Q Consensus 33 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 112 (587)
.+..++|..+-+.+...+ . ...+-..-+..+..+|+|++|..+.+.. ..|+...|. +-+-.+.|-.+++...
T Consensus 19 ~H~HqEA~tIAdwL~~~~-~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~--ALce~rlGl~s~le~r 90 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLG-Q-DEAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWF--ALCEWHLGLGAALDRR 90 (115)
T ss_dssp TTCHHHHHHHHHHHHHTT-C-HHHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHH--HHHHHHTTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCC-c-HHHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHH--HHHHHhcccHHHHHHH
Confidence 556788888888877654 1 2222223345567899999998765432 234444454 4455788988999888
Q ss_pred HHHHHHCCCCCChhhHH
Q 038622 113 IQEMVSEGFNPDQFTYN 129 (587)
Q Consensus 113 ~~~~~~~~~~~~~~~~~ 129 (587)
+.++...| .|....|.
T Consensus 91 L~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 91 LAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHHTCS-SHHHHHHH
T ss_pred HHHHHhCC-CHHHHHHH
Confidence 88887765 44444443
No 296
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=42.12 E-value=1.3e+02 Score=23.95 Aligned_cols=60 Identities=13% Similarity=0.014 Sum_probs=26.2
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 038622 439 TPQAYNPVIQALFRRKRTTEAMRLFREMMEKADPPDALTYKHVFRGLCNGGGPIGEAVDFVIEMLE 504 (587)
Q Consensus 439 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~ 504 (587)
+.......+.++...+.. ++...+..++. .++...-...+.++...|. +++...+..+++
T Consensus 120 ~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~A~~aL~~~~~--~~~~~~L~~~l~ 179 (201)
T 3ltj_A 120 DWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAADALGEIGG--ERVRAAMEKLAE 179 (201)
T ss_dssp SHHHHHHHHHHHHHHTCG-GGHHHHHHHTT---CSSHHHHHHHHHHHHHHCS--HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCH-HHHHHHHHHHc---CCCHHHHHHHHHHHHHhCc--hhHHHHHHHHHh
Confidence 344444444444444432 23333444433 2344444444444444443 455555555553
No 297
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=41.34 E-value=93 Score=23.52 Aligned_cols=59 Identities=15% Similarity=0.101 Sum_probs=32.4
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCC
Q 038622 10 DMVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGN 70 (587)
Q Consensus 10 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 70 (587)
.+.+.|++++. .-..+++.+...+ .-.|.++++.+.+.+...+..+....+..+.+.|-
T Consensus 9 ~L~~~g~r~T~-qR~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 9 DLRQRGYRLTP-QRQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHHTTTCCCCH-HHHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCH-HHHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 34445555442 3345555555555 66677777766655544455555555555555553
No 298
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=40.76 E-value=91 Score=21.79 Aligned_cols=88 Identities=16% Similarity=0.110 Sum_probs=56.5
Q ss_pred cCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 038622 33 AHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSF 112 (587)
Q Consensus 33 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 112 (587)
.+..++|..+-+.+...+ . ...+-..-+..+..+|+|++|..+.+..- .|+...|..| +-.+.|-.+++...
T Consensus 20 ~H~HqEA~tIAdwL~~~~-~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~AL--ce~rlGl~s~le~r 91 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKG-E-EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLAL--CEYRLGLGSALESR 91 (116)
T ss_dssp TTCHHHHHHHHHHHHHTT-C-HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHH--HHHHHTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCC-c-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHH--HHHhcccHHHHHHH
Confidence 566788888888877654 2 22222233455678999999988765432 4455555444 45678888888888
Q ss_pred HHHHHHCCCCCChhhHH
Q 038622 113 IQEMVSEGFNPDQFTYN 129 (587)
Q Consensus 113 ~~~~~~~~~~~~~~~~~ 129 (587)
+.++...| .|....|.
T Consensus 92 L~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 92 LNRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHHHTTCC-CHHHHHHH
T ss_pred HHHHHhCC-CHHHHHHH
Confidence 87877765 44444443
No 299
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=40.32 E-value=1.2e+02 Score=23.54 Aligned_cols=52 Identities=12% Similarity=0.095 Sum_probs=26.2
Q ss_pred hcCChHHHHHHHHHHHHcCCCC--ChHhHHHHHH------HHHhcCCHHHHHHHHHHHHh
Q 038622 417 KAGRVEVASKLLRSIQMKGIVL--TPQAYNPVIQ------ALFRRKRTTEAMRLFREMME 468 (587)
Q Consensus 417 ~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~------~~~~~g~~~~A~~~~~~~~~ 468 (587)
..|++-+|-++|+.+-.....+ ....|..|++ ...+.|+...|..++.+++.
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3466666666666655443333 2233444433 12345666666666666654
No 300
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=39.97 E-value=1.2e+02 Score=22.90 Aligned_cols=58 Identities=12% Similarity=0.096 Sum_probs=29.0
Q ss_pred HHhCCCCCCHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcC
Q 038622 11 MVSRGIKPDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEG 69 (587)
Q Consensus 11 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 69 (587)
+.+.|++++ ..-..++..+...+..-.|.++++.+.+.+...+..+....+..+.+.|
T Consensus 13 l~~~g~r~T-~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 13 LKETGVRIT-PQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHTTCCCC-HHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCC-HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 444554443 2333455555555555556666666655443344445445555554444
No 301
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=38.73 E-value=1.4e+02 Score=23.19 Aligned_cols=52 Identities=8% Similarity=0.058 Sum_probs=33.1
Q ss_pred ccCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHH-H-----HHhcCCHHHHHHHHHHHHH
Q 038622 312 KLKRIEEAEEIFDEMEIQGISR--NSVTYNTLID-G-----LCKSRRVEDAAQLMDQMIM 363 (587)
Q Consensus 312 ~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~~~~~~A~~~~~~~~~ 363 (587)
..|++-+|.++++.+-.....+ ....|..+++ + ..+.|+...|..++.++..
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3478888888888776554333 3445555555 2 2356777777777777765
No 302
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=37.82 E-value=84 Score=25.60 Aligned_cols=77 Identities=12% Similarity=0.049 Sum_probs=0.0
Q ss_pred hhhHHHHHHhhccCCCCCCHH-------HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 038622 36 IRPAILMMEEMPGYGLAPDER-------TFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIED 108 (587)
Q Consensus 36 ~~~A~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 108 (587)
++.|+.+++.+.+...-++.. +-...+..|.+.|.|++|.+++++....+ +.+...-..|+..-.+.+.+..
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~-~s~~kLr~kL~~II~~Kd~~H~ 166 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKD-PTTQKLRNDLLNIIREKNLAHP 166 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTC-GGGHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCC-CCchHHHHHHHHHHhccCcccH
Q ss_pred HHHHH
Q 038622 109 ALSFI 113 (587)
Q Consensus 109 a~~~~ 113 (587)
.++.|
T Consensus 167 ~lqnF 171 (235)
T 3bu8_A 167 VIQNF 171 (235)
T ss_dssp HHHTC
T ss_pred HHHhc
No 303
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=35.68 E-value=1.5e+02 Score=22.81 Aligned_cols=20 Identities=20% Similarity=0.109 Sum_probs=11.5
Q ss_pred HHHHHHccCCHhHHHHHHHH
Q 038622 517 LAEGLVSLGKEETLVELIDM 536 (587)
Q Consensus 517 l~~~~~~~g~~~~A~~~~~~ 536 (587)
+.|+|...|++++|+.+.+.
T Consensus 79 ~YWIyiGRg~~~eAlDiA~~ 98 (161)
T 2ynq_A 79 LYWIYIGRSQSEEALELART 98 (161)
T ss_dssp HHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcCCchHHHHHHHHh
Confidence 45556666666666655544
No 304
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=35.20 E-value=2e+02 Score=24.04 Aligned_cols=29 Identities=10% Similarity=0.093 Sum_probs=16.8
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038622 439 TPQAYNPVIQALFRRKRTTEAMRLFREMM 467 (587)
Q Consensus 439 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 467 (587)
........+..+.+.|+.++|.++|-+..
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 33444455566666677777666665544
No 305
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=34.90 E-value=1.2e+02 Score=22.51 Aligned_cols=57 Identities=14% Similarity=0.067 Sum_probs=25.6
Q ss_pred HhCCCCCCHhhHHHHHHHHHHcC-ChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcC
Q 038622 12 VSRGIKPDVSTFNILIKALCKAH-QIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEG 69 (587)
Q Consensus 12 ~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 69 (587)
.+.|++++ ..-..++..+...+ ..-.|.++++.+.+.+...+..+....+..+.+.|
T Consensus 10 ~~~g~r~T-~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 10 RKAGLKVT-LPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp HHTTCCCC-HHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHCCCCCC-HHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 33444433 22334444444444 45555555555554443344444444444444444
No 306
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=34.10 E-value=2.4e+02 Score=24.79 Aligned_cols=23 Identities=17% Similarity=0.150 Sum_probs=14.4
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHc
Q 038622 482 FRGLCNGGGPIGEAVDFVIEMLER 505 (587)
Q Consensus 482 ~~~~~~~~~~~~~A~~~~~~~~~~ 505 (587)
....++.++ +..|..+.+++++.
T Consensus 205 M~~a~K~KN-y~tAa~fArrLLel 227 (320)
T 3mkr_B 205 LNLFFKLKN-FRTAAAFARRLLEL 227 (320)
T ss_dssp HHHHHHTTB-HHHHHHHHHHHHHT
T ss_pred HHHHHHhhh-HHHHHHHHHHHHhc
Confidence 334556666 77777777777763
No 307
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=33.49 E-value=1.6e+02 Score=22.55 Aligned_cols=25 Identities=20% Similarity=0.305 Sum_probs=20.2
Q ss_pred HHHHHHHHHHcCChhhHHHHHHhhc
Q 038622 23 FNILIKALCKAHQIRPAILMMEEMP 47 (587)
Q Consensus 23 ~~~l~~~~~~~~~~~~A~~~~~~~~ 47 (587)
...++.-|...|+.++|...++++.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 4567788888888888888888875
No 308
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=33.14 E-value=35 Score=22.50 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=20.0
Q ss_pred HHHHHHHHccCCHhHHHHHHHHHHh
Q 038622 515 YMLAEGLVSLGKEETLVELIDMVMD 539 (587)
Q Consensus 515 ~~l~~~~~~~g~~~~A~~~~~~~~~ 539 (587)
..+++-|...|+|+.|+.+|+.+++
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~ 40 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLD 40 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHH
Confidence 4578888888888888888887765
No 309
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=32.42 E-value=69 Score=24.87 Aligned_cols=48 Identities=10% Similarity=0.004 Sum_probs=27.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCCcccHHHHHHHHHhcCC
Q 038622 128 YNTLVNGLCKVGHVKQALEVMDMMLQE--GFDPDVFTYNSLISGLCKLGE 175 (587)
Q Consensus 128 ~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~ 175 (587)
-..++..+...+..-.|.++++.+.+. +...+..|.+.-+..+...|-
T Consensus 35 R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 35 REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 344555555556666777777776654 444455555555555555553
No 310
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=32.40 E-value=1.3e+02 Score=22.90 Aligned_cols=59 Identities=14% Similarity=0.139 Sum_probs=27.5
Q ss_pred HHhCCCCCCHhhHHHHHHHHHHcC-ChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCC
Q 038622 11 MVSRGIKPDVSTFNILIKALCKAH-QIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGN 70 (587)
Q Consensus 11 ~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 70 (587)
|.+.|+.++. .-..++..+...+ ..-.|.++++.+.+.+...+..+....+..+.+.|-
T Consensus 8 l~~~g~r~T~-qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 8 LKDAGLKVTL-PRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHTTCCCCH-HHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 3344544432 2234444444444 455555666555544433444444444455544443
No 311
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=32.38 E-value=2.2e+02 Score=23.74 Aligned_cols=61 Identities=18% Similarity=0.148 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHhhHHHHHHHHHh-cCCHHHHHHHHHHHH
Q 038622 337 TYNTLIDGLCKSRRVEDAAQLMDQMIMEGLKPDKFTYNSLLTYYCR-AGDIKRAADIVQNMT 397 (587)
Q Consensus 337 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~ 397 (587)
-...++....+.+++++.....+++...+...+..--+.|-.+|-. .|....+.+++..+.
T Consensus 10 ~~v~~AklaeqaeRyddM~~~mk~v~~~~~eLs~EERnLLSvaYKNvig~rR~swRiissie 71 (236)
T 3iqu_A 10 SLIQKAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAYKNVVGGQRAAWRVLSSIE 71 (236)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHHHHH
Confidence 3444566667788888888888888877666666666655555532 244455556655444
No 312
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=32.15 E-value=88 Score=25.09 Aligned_cols=19 Identities=26% Similarity=0.385 Sum_probs=9.1
Q ss_pred HHHhcCChhHHHHHHHHHH
Q 038622 64 GLIEEGNLDGALRIREQMV 82 (587)
Q Consensus 64 ~~~~~g~~~~A~~~~~~~~ 82 (587)
.|.+.|.+++|.+++++..
T Consensus 126 VCiekg~Fk~A~eiLkr~f 144 (211)
T 3bqo_A 126 VCMENGNFKEAEEVFERIF 144 (211)
T ss_dssp HHHHTTCHHHHHHHHHHHC
T ss_pred HHHHccchHHHHHHHHHHh
Confidence 3444555555555554443
No 313
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=32.06 E-value=45 Score=20.50 Aligned_cols=33 Identities=15% Similarity=0.177 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHhCCCCCCHhhHHHHHHHH-HHcC
Q 038622 2 KLVETAHADMVSRGIKPDVSTFNILIKAL-CKAH 34 (587)
Q Consensus 2 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~ 34 (587)
++|+..|.+|++..--+...+|...++.. +...
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DP 36 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISELGTRDP 36 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCT
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCC
Confidence 46677777777644344447777777776 4443
No 314
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=31.68 E-value=89 Score=21.43 Aligned_cols=13 Identities=23% Similarity=0.194 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHH
Q 038622 492 IGEAVDFVIEMLE 504 (587)
Q Consensus 492 ~~~A~~~~~~~~~ 504 (587)
.+.|+.++.++++
T Consensus 12 l~~Ai~lv~~Ave 24 (93)
T 1wfd_A 12 STAAVAVLKRAVE 24 (93)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4455555555543
No 315
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=31.53 E-value=80 Score=24.48 Aligned_cols=57 Identities=12% Similarity=0.017 Sum_probs=36.0
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc--CCCCChhhHHHHHHHHHhcCCH
Q 038622 49 YGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEH--GCLVTNVTVNVLVHGFCKEGRI 106 (587)
Q Consensus 49 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~ 106 (587)
.|+..++ .-..++..+...+..-.|.++++.+.+. ++..+..+.+.-+..+...|-.
T Consensus 27 ~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 27 GGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred cCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 3544433 3344555566666777788888887766 5556666666677777777654
No 316
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=29.97 E-value=2.1e+02 Score=22.69 Aligned_cols=80 Identities=11% Similarity=-0.009 Sum_probs=33.2
Q ss_pred CCHhhHHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHH
Q 038622 18 PDVSTFNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLV 97 (587)
Q Consensus 18 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 97 (587)
+|..+...-+..+.+.+.......+.+.+ . .+++.+-...+.++...|+.+ +...+..+.. .++..+....+
T Consensus 26 ~~~~vr~~A~~~L~~~~~~~~~~~L~~~l-~---~~~~~vr~~a~~~L~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~ 97 (201)
T 3ltj_A 26 DSYYVRRAAAYALGKIGDERAVEPLIKAL-K---DEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAA 97 (201)
T ss_dssp SCHHHHHHHHHHHHHHCCGGGHHHHHHHT-T---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHH-c---CCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHH
Confidence 44445555555555555433333333222 1 234444444444444444432 2233333332 22334444444
Q ss_pred HHHHhcCC
Q 038622 98 HGFCKEGR 105 (587)
Q Consensus 98 ~~~~~~~~ 105 (587)
.++...++
T Consensus 98 ~aL~~~~~ 105 (201)
T 3ltj_A 98 VALGQIGD 105 (201)
T ss_dssp HHHHHHCC
T ss_pred HHHHHhCc
Confidence 44444444
No 317
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=28.96 E-value=1.8e+02 Score=21.80 Aligned_cols=11 Identities=9% Similarity=0.335 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 038622 423 VASKLLRSIQM 433 (587)
Q Consensus 423 ~a~~~~~~~~~ 433 (587)
.|.++++.+.+
T Consensus 39 sa~ei~~~l~~ 49 (145)
T 2fe3_A 39 TADDIYKALEG 49 (145)
T ss_dssp CHHHHHHHHGG
T ss_pred CHHHHHHHHHH
Confidence 33333333333
No 318
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=27.73 E-value=57 Score=20.55 Aligned_cols=45 Identities=18% Similarity=0.183 Sum_probs=24.9
Q ss_pred HHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhc
Q 038622 23 FNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEE 68 (587)
Q Consensus 23 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 68 (587)
++.+++.+.+..-.+.++..+.++.+.| .-+...|..-.+.+++.
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaRe 49 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELARQ 49 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHH
Confidence 4455555555555666666666666555 45555555555555443
No 319
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=27.68 E-value=2e+02 Score=21.79 Aligned_cols=45 Identities=13% Similarity=0.062 Sum_probs=22.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 038622 61 LMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGR 105 (587)
Q Consensus 61 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 105 (587)
++..+...+..-.|.++++.+.+.++..+..+.+.-+..+...|-
T Consensus 32 IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 32 VVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 333344444455555555555555444445555555555555543
No 320
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=26.78 E-value=1.2e+02 Score=20.18 Aligned_cols=16 Identities=6% Similarity=-0.170 Sum_probs=7.9
Q ss_pred ccCCHhHHHHHHHHHH
Q 038622 523 SLGKEETLVELIDMVM 538 (587)
Q Consensus 523 ~~g~~~~A~~~~~~~~ 538 (587)
..|++++|+.+|..++
T Consensus 25 ~~g~y~eAl~~Y~~ai 40 (85)
T 2v6x_A 25 TATQYEEAYTAYYNGL 40 (85)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 3455555555554443
No 321
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=26.18 E-value=2e+02 Score=21.19 Aligned_cols=62 Identities=15% Similarity=0.182 Sum_probs=34.3
Q ss_pred HHHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCC--hhHHHHHHHHHHHcC
Q 038622 23 FNILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGN--LDGALRIREQMVEHG 85 (587)
Q Consensus 23 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~ 85 (587)
...++.-|...|+.++|...++++..-. -....+...+..++-+.++ .+.+..++..+...+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~-f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~ 73 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSS 73 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCc-cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCC
Confidence 4567888888899999988888875211 1111222223333333221 345566666666554
No 322
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=25.29 E-value=1.3e+02 Score=22.12 Aligned_cols=45 Identities=18% Similarity=0.173 Sum_probs=22.6
Q ss_pred HHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcC
Q 038622 25 ILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEG 69 (587)
Q Consensus 25 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 69 (587)
.+++.+...+..-.|.++++.+.+.+...+..+....+..+.+.|
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 344555445555555555555554443344444444455554444
No 323
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=25.28 E-value=1.1e+02 Score=19.75 Aligned_cols=29 Identities=21% Similarity=0.208 Sum_probs=25.0
Q ss_pred HHHHHHHccCCHhHHHHHHHHHHhcCCCC
Q 038622 516 MLAEGLVSLGKEETLVELIDMVMDKAKFS 544 (587)
Q Consensus 516 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 544 (587)
.+|..+...|++++|...+-+++..-|.+
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP 50 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQP 50 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 47888888999999999888888888876
No 324
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=24.81 E-value=2e+02 Score=21.23 Aligned_cols=14 Identities=7% Similarity=0.076 Sum_probs=6.0
Q ss_pred hHHHHHHHHHHHHc
Q 038622 421 VEVASKLLRSIQMK 434 (587)
Q Consensus 421 ~~~a~~~~~~~~~~ 434 (587)
.-.|.++++.+.+.
T Consensus 34 ~~sa~ei~~~l~~~ 47 (136)
T 1mzb_A 34 HMSAEDVYKALMEA 47 (136)
T ss_dssp SBCHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhh
Confidence 33444444444443
No 325
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=24.59 E-value=2.8e+02 Score=22.43 Aligned_cols=48 Identities=13% Similarity=0.015 Sum_probs=22.7
Q ss_pred HHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 038622 30 LCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIRE 79 (587)
Q Consensus 30 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 79 (587)
.++.|+.+....+++.-.... .++..- ...+...+..|+.+-+..+++
T Consensus 16 A~~~g~~~~~~~Ll~~g~~~~-~~~~~g-~t~L~~A~~~~~~~~v~~Ll~ 63 (240)
T 3eu9_A 16 ATQYGIYERCRELVEAGYDVR-QPDKEN-VTLLHWAAINNRIDLVKYYIS 63 (240)
T ss_dssp HHHTTCHHHHHHHHHTTCCTT-CCCTTS-CCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHcCChHHHHHHHHcCCCcC-CCCCCC-CCHHHHHHHhCCHHHHHHHHH
Confidence 466777766666665433221 112111 123334456677655444443
No 326
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=23.97 E-value=1.4e+02 Score=20.13 Aligned_cols=17 Identities=6% Similarity=-0.173 Sum_probs=8.5
Q ss_pred HccCCHhHHHHHHHHHH
Q 038622 522 VSLGKEETLVELIDMVM 538 (587)
Q Consensus 522 ~~~g~~~~A~~~~~~~~ 538 (587)
-..|++++|+.+|..++
T Consensus 27 D~~g~y~eAl~lY~~Ai 43 (86)
T 4a5x_A 27 DSESRYPQALVCYQEGI 43 (86)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH
Confidence 34455555555554444
No 327
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=23.97 E-value=6.5e+02 Score=26.48 Aligned_cols=47 Identities=13% Similarity=0.181 Sum_probs=32.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH----HHHHHHHHHHhC
Q 038622 442 AYNPVIQALFRRKRTTEAMRLFREMMEKADPPDAL----TYKHVFRGLCNG 488 (587)
Q Consensus 442 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~ 488 (587)
-|..++..+...+.++-++++.+.+++.-.+.|.. .|..++.+.+..
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~ 949 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAA 949 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhC
Confidence 56788888889999999999999998752233332 455555555443
No 328
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=23.96 E-value=1.2e+02 Score=22.02 Aligned_cols=17 Identities=18% Similarity=0.294 Sum_probs=8.6
Q ss_pred ccCCHhHHHHHHHHHHh
Q 038622 523 SLGKEETLVELIDMVMD 539 (587)
Q Consensus 523 ~~g~~~~A~~~~~~~~~ 539 (587)
..|++++|+.+|..+++
T Consensus 30 ~ag~y~eAl~lY~~Aie 46 (117)
T 2cpt_A 30 KAGNYEEALQLYQHAVQ 46 (117)
T ss_dssp HHTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 34555555555554443
No 329
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=23.05 E-value=3.5e+02 Score=22.97 Aligned_cols=61 Identities=10% Similarity=0.070 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc-CCHHHHHHHHHHH
Q 038622 56 RTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKE-GRIEDALSFIQEM 116 (587)
Q Consensus 56 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~ 116 (587)
.....+++..-+.+++++.....+++.+.+...+..-.+.|..+|-.. |....+.+++..+
T Consensus 32 e~lv~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRiissi 93 (261)
T 3ubw_A 32 EDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSI 93 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHHhHH
Confidence 344445555566677777777777777776666666666555555322 4444555555444
No 330
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.03 E-value=4e+02 Score=24.35 Aligned_cols=23 Identities=17% Similarity=0.424 Sum_probs=12.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 038622 375 SLLTYYCRAGDIKRAADIVQNMT 397 (587)
Q Consensus 375 ~l~~~~~~~~~~~~A~~~~~~~~ 397 (587)
.++..|...++.+.|..++++..
T Consensus 132 ~i~~~yl~~~d~~~a~~~l~~~~ 154 (393)
T 4b4t_O 132 EIARTYLLKNDLVKARDLLDDLE 154 (393)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Confidence 33444555566666666655544
No 331
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=22.58 E-value=3.1e+02 Score=22.16 Aligned_cols=99 Identities=11% Similarity=0.172 Sum_probs=0.0
Q ss_pred CHhhHHHHHHHHHhc---CChHHHHHHHHHHHHcCCCCCHHhHHHHHHHHHccCChH-----HHHHHHHHHHHCCCCCCH
Q 038622 229 DVCTFNSLIQGLCLT---SNFDVAMELFQEMKTKGCQPDEFTYNMLIDSLCSRGMLE-----EALKLLKEMESSGCARNV 300 (587)
Q Consensus 229 ~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-----~a~~~~~~~~~~~~~~~~ 300 (587)
+...+..+++++.++ +|.+.|+-++.+|++.| .|.-..-..++.+.-.-|.-+ .|...++.....|.|.-.
T Consensus 10 ~Gd~HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~ 88 (204)
T 2r9g_A 10 NGDAHYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPEAR 88 (204)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTTTH
T ss_pred CchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHH
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 038622 301 VTYNTLIDGFCKLKRIEEAEEIFDEMEI 328 (587)
Q Consensus 301 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 328 (587)
..+...+..++..-+-..+...++.+.+
T Consensus 89 i~LaqaviyLA~aPKSNs~y~A~~~A~~ 116 (204)
T 2r9g_A 89 IPLADVVVDLCLSPKSNSAYMALDAALA 116 (204)
T ss_dssp HHHHHHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHHHHH
No 332
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=22.45 E-value=1.2e+02 Score=19.09 Aligned_cols=41 Identities=15% Similarity=0.157 Sum_probs=18.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 038622 95 VLVHGFCKEGRIEDALSFIQEMVSEGFNPDQFTYNTLVNGLC 136 (587)
Q Consensus 95 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 136 (587)
.++..++...-.++++..+.+++..| ..+...|..-.+.++
T Consensus 7 Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~La 47 (65)
T 2f6m_A 7 QLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELA 47 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence 33344444444455555555555544 333444444444333
No 333
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=22.00 E-value=1.9e+02 Score=21.80 Aligned_cols=43 Identities=9% Similarity=0.108 Sum_probs=22.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC
Q 038622 131 LVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLG 174 (587)
Q Consensus 131 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 174 (587)
++..+...+ .-.|.++++.+.+.+...+..|.+.-+..+...|
T Consensus 24 Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 24 VLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 344444444 5566666666666544445555554555554444
No 334
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=21.94 E-value=1.1e+02 Score=22.79 Aligned_cols=45 Identities=22% Similarity=0.215 Sum_probs=21.2
Q ss_pred HHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcC
Q 038622 25 ILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEG 69 (587)
Q Consensus 25 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 69 (587)
.+++.+...++.-.|.++++.+.+.+...+..+....+..+.+.|
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 444444444445555555555544433334444444444444444
No 335
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=21.88 E-value=78 Score=25.38 Aligned_cols=19 Identities=16% Similarity=0.207 Sum_probs=11.7
Q ss_pred HHHhCCCCHHHHHHHHHHHH
Q 038622 484 GLCNGGGPIGEAVDFVIEML 503 (587)
Q Consensus 484 ~~~~~~~~~~~A~~~~~~~~ 503 (587)
.|.+.|. +++|.+++++..
T Consensus 126 VCiekg~-Fk~A~eiLkr~f 144 (211)
T 3bqo_A 126 VCMENGN-FKEAEEVFERIF 144 (211)
T ss_dssp HHHHTTC-HHHHHHHHHHHC
T ss_pred HHHHccc-hHHHHHHHHHHh
Confidence 4556666 666666666654
No 336
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=21.85 E-value=3.1e+02 Score=22.03 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=14.3
Q ss_pred hcCChHHHHHHHHHHHHcCCCCC
Q 038622 242 LTSNFDVAMELFQEMKTKGCQPD 264 (587)
Q Consensus 242 ~~~~~~~a~~~~~~~~~~~~~~~ 264 (587)
+-+|.+.|+-++.+|++.|..|.
T Consensus 19 RGSDpDAAly~LaRMl~~GEDp~ 41 (201)
T 3bge_A 19 RGSAPDAALYWYARILTAGGDPL 41 (201)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHH
T ss_pred hCCCHHHHHHHHHHHHHcCCCHH
Confidence 34567777777777776664443
No 337
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=21.70 E-value=2.1e+02 Score=21.64 Aligned_cols=11 Identities=18% Similarity=0.229 Sum_probs=4.2
Q ss_pred HHHHHHHHHHH
Q 038622 423 VASKLLRSIQM 433 (587)
Q Consensus 423 ~a~~~~~~~~~ 433 (587)
.|.++++.+.+
T Consensus 35 sa~ei~~~l~~ 45 (150)
T 2w57_A 35 SAEELYKKLID 45 (150)
T ss_dssp EHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 33333333333
No 338
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=21.44 E-value=3e+02 Score=21.62 Aligned_cols=50 Identities=14% Similarity=0.109 Sum_probs=25.3
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038622 64 GLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKEGRIEDALSFIQEMVSE 119 (587)
Q Consensus 64 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 119 (587)
.+.-+|.+.+++-.+... + +......-.-+|-+..++..|+..++.++..
T Consensus 42 ~LyyngEY~R~Lf~L~~l---N---T~Ts~YYk~LCy~klKdYkkA~~~le~il~~ 91 (242)
T 3kae_A 42 VLYLNGEYTRALFHLHKL---N---TCTSKYYESLCYKKKKDYKKAIKSLESILEG 91 (242)
T ss_dssp HHHHTTCHHHHHHHHHTC---C---BHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hhhhcchHhHHHHHHHhc---c---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344566666665543221 1 1222222223455666777777777666644
No 339
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=20.72 E-value=3.5e+02 Score=22.06 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=14.2
Q ss_pred hcCChHHHHHHHHHHHHcCCCCC
Q 038622 242 LTSNFDVAMELFQEMKTKGCQPD 264 (587)
Q Consensus 242 ~~~~~~~a~~~~~~~~~~~~~~~ 264 (587)
+-+|.+.|+-++.+|++.|..|.
T Consensus 47 RGSDpDAALywLaRMl~~GEDp~ 69 (213)
T 3ctd_A 47 RGSDPDATLYWLANMVEAGEDPN 69 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHH
T ss_pred hcCCHHHHHHHHHHHHHcCCCHH
Confidence 33567777777777776664443
No 340
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=20.59 E-value=1.7e+02 Score=27.53 Aligned_cols=62 Identities=15% Similarity=0.148 Sum_probs=41.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--------HHHHH-HHHHHHHhCCCCHHHHHHHHHHHHH
Q 038622 442 AYNPVIQALFRRKRTTEAMRLFREMMEKADPPD--------ALTYK-HVFRGLCNGGGPIGEAVDFVIEMLE 504 (587)
Q Consensus 442 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------~~~~~-~l~~~~~~~~~~~~~A~~~~~~~~~ 504 (587)
..+.+...|.+.|+...+..+++.+...+..|+ ..+|. .++..+...++ +.+|.+.+..+.+
T Consensus 178 l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~-y~~A~~~L~~A~~ 248 (455)
T 3t5v_B 178 LVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQ-VHNAFVQFNEAFQ 248 (455)
T ss_dssp HHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHcc-HHHHHHHHHHHHH
Confidence 346677888888888888888887776544222 12333 34445556666 8888888877765
No 341
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=20.50 E-value=4.3e+02 Score=23.11 Aligned_cols=231 Identities=10% Similarity=0.076 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCChhhHHHHHHhhccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 038622 24 NILIKALCKAHQIRPAILMMEEMPGYGLAPDERTFTTLMQGLIEEGNLDGALRIREQMVEHGCLVTNVTVNVLVHGFCKE 103 (587)
Q Consensus 24 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 103 (587)
..++.-|...|+.++|...++++......+.......-...-.+...-+.+-.++..+.. ++-........+...+...
T Consensus 7 ~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~ll~~l 85 (307)
T 2zu6_B 7 TPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTDVEKSFDKLLKDL 85 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH-HTBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhh
Q ss_pred CC--------HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHH---------------hCCCCCC-
Q 038622 104 GR--------IEDALSFIQEMVSEGFNPDQFTYNTLVNGLCKVGHVKQALEVMDMML---------------QEGFDPD- 159 (587)
Q Consensus 104 ~~--------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---------------~~~~~~~- 159 (587)
.+ ++-.-.++.+++..++-|-..............|. +++..-+.++ ..+..+.
T Consensus 86 dDl~lD~P~a~~~la~flaraV~d~~l~~~~l~~~~~~~~~~~g~--~~l~~a~~~l~~~~~~~~~~~~WG~~~~~~~~e 163 (307)
T 2zu6_B 86 PELALDTPRAPQLVGQFIARAVGDGILCNTYIDSYKGTVDCVQAR--AALDKATVLLSMSKGGKRKDSVWGSGGGQQSVN 163 (307)
T ss_dssp HHHHHHCTTHHHHHHHHHHHHHHTTSSCTTTTGGGTTTCCCHHHH--HHHHHHHHHHHTCC----CCCSSCCCSTTSCHH
T ss_pred hHhcccccchHHHHHHHHHHHHHhCCCCHHHHHHHHhcccchHHH--HHHHHHHHHhcccccHhHHhhhcCCCCCCCCHH
Q ss_pred --cccHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHhccCCH--HHHHHHHHHHHhCCCCCCHhhHHH
Q 038622 160 --VFTYNSLISGLCKLGEVEEAVEILNQMILRDCSPNTITYNTLISTLCKENQV--EEATELARVLTSKGILPDVCTFNS 235 (587)
Q Consensus 160 --~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~ 235 (587)
......++.-|...|+.++|.+.++++..-.+. .......+..+.-+.++. +....++..+.+.++-+.......
T Consensus 164 elkkki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q~~~G 242 (307)
T 2zu6_B 164 HLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQMKRG 242 (307)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHHHHHH
Q ss_pred HHHHHHhcC----ChHHHHHHHHHHHH
Q 038622 236 LIQGLCLTS----NFDVAMELFQEMKT 258 (587)
Q Consensus 236 l~~~~~~~~----~~~~a~~~~~~~~~ 258 (587)
+.+.+.... |...|..++..+..
T Consensus 243 f~~vl~~l~Dl~lDiP~A~~~la~~v~ 269 (307)
T 2zu6_B 243 YERIYNEIPDINLDVPHSYSVLERFVE 269 (307)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHH
T ss_pred HHHHHHhccHhhcccccHHHHHHHHHH
No 342
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=20.38 E-value=1.2e+02 Score=22.66 Aligned_cols=45 Identities=22% Similarity=0.293 Sum_probs=24.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC
Q 038622 130 TLVNGLCKVGHVKQALEVMDMMLQEGFDPDVFTYNSLISGLCKLG 174 (587)
Q Consensus 130 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 174 (587)
.++..+...++.-.|.++++.+.+.+...+..|.+..+..+...|
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 344445555555666666666666544445555555555555544
No 343
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=20.36 E-value=2.1e+02 Score=26.88 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=13.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 038622 374 NSLLTYYCRAGDIKRAADIVQNMTSN 399 (587)
Q Consensus 374 ~~l~~~~~~~~~~~~A~~~~~~~~~~ 399 (587)
+.+...|.+.++...+..+++.+...
T Consensus 180 n~L~kiYFkl~~~~lckni~k~i~~~ 205 (455)
T 3t5v_B 180 NKLNNIYFRIESPQLCSNIFKNFQPK 205 (455)
T ss_dssp HHHHHHHHHSSCCTTHHHHHHTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 34445555555555555555555443
Done!