BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038630
(885 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2J1D|G Chain G, Crystallization Of Hdaam1 C-Terminal Fragment
Length = 483
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 112/413 (27%), Positives = 183/413 (44%), Gaps = 53/413 (12%)
Query: 448 LKALHWDKVRATSDRATVWDQLKSSS-FQLN--EDMMESL--------FGCNSVNSVPKE 496
LK+ +W K+ TVW ++ + F++ ED+ + F NS NS KE
Sbjct: 15 LKSFNWSKLPENKLEGTVWTEIDDTKVFKILDLEDLERTFSAYQRQQDFFVNS-NSKQKE 73
Query: 497 PT----TRKSVLPPVELENRVLDPKKSQNIAILLRALNVTRDEVSEALLDGNP-ESLGAE 551
T S L EL V+D +++QN ILL L ++ DE+ A+L + E L +
Sbjct: 74 ADAIDDTLSSKLKVKELS--VIDGRRAQNCNILLSRLKLSNDEIKRAILTMDEQEDLPKD 131
Query: 552 LLETLVKMAPTKEEEIKLREYKGDILKLGSAERFLKAVLDIPFAFKRVEAMLYRANFDAE 611
+LE L+K P K + L E+K ++ ++ A+RFL + I +R++++ ++ F
Sbjct: 132 MLEQLLKFVPEKSDIDLLEEHKHELDRMAKADRFLFEMSRINHYQQRLQSLYFKKKFAER 191
Query: 612 VKYLRKSYQTLEAASEELKNSRLFLKLLEAVLKTGNRMNVGTNRGDAKAFKLDTLLKLVD 671
V ++ + + + SEE+ S +LLE VL GN MN G RG+A FK+ +L K+ D
Sbjct: 192 VAEVKPKVEAIRSGSEEVFRSGALKQLLEVVLAFGNYMNKG-QRGNAYGFKISSLNKIAD 250
Query: 672 IKGT-DGKTTLLHFVVQEIIRAEGAGTKSTEVNVESKNSMREDEFKKQGLEVVSGLSRDL 730
K + D TLLH+++ VE+K V L+ +L
Sbjct: 251 TKSSIDKNITLLHYLI---------------TIVENK------------YPSVLNLNEEL 283
Query: 731 SNVKKAAGMDSDVLSSYVMKLEMGLEKVRLVLQYEK---PDMQGKFFHSMKMFLXXXXXX 787
++ +AA ++ L + L GL+ V L+Y+K P KF + F+
Sbjct: 284 RDIPQAAKVNMTELDKEISTLRSGLKAVETELEYQKSQPPQPGDKFVSVVSQFITVASFS 343
Query: 788 XXXXXXXXXMALSLVKEVTEYFHGNAAKEEAHPFRIFMIVRDFLAILDHVCKE 840
A L + ++F A K P F I FL + +E
Sbjct: 344 FSDVEDLLAEAKDLFTKAVKHFGEEAGK--IQPDEFFGIFDQFLQAVSEAKQE 394
>pdb|2Z6E|A Chain A, Crystal Structure Of Human Daam1 Fh2
pdb|2Z6E|B Chain B, Crystal Structure Of Human Daam1 Fh2
pdb|2Z6E|C Chain C, Crystal Structure Of Human Daam1 Fh2
pdb|2Z6E|D Chain D, Crystal Structure Of Human Daam1 Fh2
Length = 419
Score = 104 bits (259), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 110/413 (26%), Positives = 185/413 (44%), Gaps = 53/413 (12%)
Query: 448 LKALHWDKVRATSDRATVWDQLKSSS-FQLN--EDMMESL--------FGCNSVNSVPKE 496
LK+ +W K+ TVW ++ + F++ ED+ + F NS NS KE
Sbjct: 17 LKSFNWSKLPENKLEGTVWTEIDDTKVFKILDLEDLERTFSAYQRQQDFFVNS-NSKQKE 75
Query: 497 PT----TRKSVLPPVELENRVLDPKKSQNIAILLRALNVTRDEVSEALLDGNP-ESLGAE 551
T S L EL V+D +++QN ILL L ++ DE+ A+L + E L +
Sbjct: 76 ADAIDDTLSSKLKVKELS--VIDGRRAQNCNILLSRLKLSNDEIKRAILTMDEQEDLPKD 133
Query: 552 LLETLVKMAPTKEEEIKLREYKGDILKLGSAERFLKAVLDIPFAFKRVEAMLYRANFDAE 611
+LE L+K P K + L E+K ++ ++ A+RFL + I +R++++ ++ F
Sbjct: 134 MLEQLLKFVPEKSDIDLLEEHKHELDRMAKADRFLFEMSRINHYQQRLQSLYFKKKFAER 193
Query: 612 VKYLRKSYQTLEAASEELKNSRLFLKLLEAVLKTGNRMNVGTNRGDAKAFKLDTLLKLVD 671
V ++ + + + SEE+ S +LLE VL GN MN G RG+A FK+ +L K+ D
Sbjct: 194 VAEVKPKVEAIRSGSEEVFRSGALKQLLEVVLAFGNYMNKG-QRGNAYGFKISSLNKIAD 252
Query: 672 IKGT-DGKTTLLHFVVQEIIRAEGAGTKSTEVNVESKNSMREDEFKKQGLEVVSGLSRDL 730
K + D TLLH+++ ++ E+++ V L+ +L
Sbjct: 253 TKSSIDKNITLLHYLI----------------------TIVENKYPS-----VLNLNEEL 285
Query: 731 SNVKKAAGMDSDVLSSYVMKLEMGLEKVRLVLQYEK---PDMQGKFFHSMKMFLXXXXXX 787
++ +AA ++ L + L GL+ V L+Y+K P KF + F+
Sbjct: 286 RDIPQAAKVNMTELDKEISTLRSGLKAVETELEYQKSQPPQPGDKFVSVVSQFITVASFS 345
Query: 788 XXXXXXXXXMALSLVKEVTEYFHGNAAKEEAHPFRIFMIVRDFLAILDHVCKE 840
A L + ++F A K P F I FL + +E
Sbjct: 346 FSDVEDLLAEAKDLFTKAVKHFGEEAGK--IQPDEFFGIFDQFLQAVSEAKQE 396
>pdb|3O4X|E Chain E, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|H Chain H, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|G Chain G, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
pdb|3O4X|F Chain F, Crystal Structure Of Complex Between Amino And Carboxy
Terminal Fragments Of Mdia1
Length = 467
Score = 92.4 bits (228), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 89/173 (51%)
Query: 515 DPKKSQNIAILLRALNVTRDEVSEALLDGNPESLGAELLETLVKMAPTKEEEIKLREYKG 574
D K +QN++I L + + E+ +L+ N L +++ L+K P E+ L E K
Sbjct: 103 DSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKE 162
Query: 575 DILKLGSAERFLKAVLDIPFAFKRVEAMLYRANFDAEVKYLRKSYQTLEAASEELKNSRL 634
+ L +E+F + +P R+ A+L++ F +V+ ++ ++ AA EEL+ S
Sbjct: 163 EYDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSEN 222
Query: 635 FLKLLEAVLKTGNRMNVGTNRGDAKAFKLDTLLKLVDIKGTDGKTTLLHFVVQ 687
F LLE L GN MN G+ A F + L KL D K D K TLLHF+ +
Sbjct: 223 FSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLAE 275
>pdb|1V9D|A Chain A, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
pdb|1V9D|B Chain B, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
pdb|1V9D|C Chain C, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
pdb|1V9D|D Chain D, Crystal Structure Of The Core Fh2 Domain Of Mouse Mdia1
Length = 340
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 89/173 (51%)
Query: 515 DPKKSQNIAILLRALNVTRDEVSEALLDGNPESLGAELLETLVKMAPTKEEEIKLREYKG 574
D K +QN++I L + + E+ +L+ N L +++ L+K P E+ L E K
Sbjct: 13 DSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKE 72
Query: 575 DILKLGSAERFLKAVLDIPFAFKRVEAMLYRANFDAEVKYLRKSYQTLEAASEELKNSRL 634
+ L +E+F + +P R+ A+L++ F +V+ ++ ++ AA EEL+ S
Sbjct: 73 EYDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSEN 132
Query: 635 FLKLLEAVLKTGNRMNVGTNRGDAKAFKLDTLLKLVDIKGTDGKTTLLHFVVQ 687
F LLE L GN MN G+ A F + L KL D K D K TLLHF+ +
Sbjct: 133 FSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLAE 185
>pdb|3OBV|E Chain E, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|F Chain F, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|G Chain G, Autoinhibited Formin Mdia1 Structure
pdb|3OBV|H Chain H, Autoinhibited Formin Mdia1 Structure
Length = 457
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 56/173 (32%), Positives = 89/173 (51%)
Query: 515 DPKKSQNIAILLRALNVTRDEVSEALLDGNPESLGAELLETLVKMAPTKEEEIKLREYKG 574
D K +QN++I L + + E+ +L+ N L +++ L+K P E+ L E K
Sbjct: 84 DSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKE 143
Query: 575 DILKLGSAERFLKAVLDIPFAFKRVEAMLYRANFDAEVKYLRKSYQTLEAASEELKNSRL 634
+ L +E+F + +P R+ A+L++ F +V+ ++ ++ AA EEL+ S
Sbjct: 144 EYDDLAESEQFGVVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSEN 203
Query: 635 FLKLLEAVLKTGNRMNVGTNRGDAKAFKLDTLLKLVDIKGTDGKTTLLHFVVQ 687
F LLE L GN MN G+ A F + L KL D K D K TLLHF+ +
Sbjct: 204 FSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTKSADQKMTLLHFLAE 256
>pdb|4EAH|A Chain A, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
pdb|4EAH|E Chain E, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
pdb|4EAH|C Chain C, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
pdb|4EAH|B Chain B, Crystal Structure Of The Formin Homology 2 Domain Of Fmnl3
Bound To Actin
Length = 402
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 123/250 (49%), Gaps = 14/250 (5%)
Query: 445 KPKLKALHWDKVRATSDRATVWDQLKSSSF--QLNEDMMESLFGCNS----VNSVPKEPT 498
K +L +W ++ TV+ +L L+ D E LF + ++ + +
Sbjct: 16 KFRLPVFNWTALKPNQINGTVFSELDDEKILEDLDLDRFEELFKTKAQGPALDLICSKNK 75
Query: 499 TRKSVLPPVELENRVLDPKKSQNIAILLRALNVTRDEVSEALLDGNPESLGAELLETLVK 558
T + V L L+ +++N+AI LR + +E+ A+ + ++L + +E L++
Sbjct: 76 TAQKAASKVTL----LEANRAKNLAITLRKAGRSAEEICRAIHTFDLQTLPVDFVECLMR 131
Query: 559 MAPTKEEEIKLREYKGD---ILKLGSAERFLKAVLDIPFAFKRVEAMLYRANFDAEVKYL 615
PT+ E LR+Y+ + + +L + +RF+ + +R+ M + NF ++ L
Sbjct: 132 FLPTEAEVKLLRQYERERQPLEELAAEDRFMLLFSKVERLTQRMAGMAFLGNFQDNLQML 191
Query: 616 RKSYQTLEAASEELKNSRLFLKLLEAVLKTGNRMNVGTNRGDAKAFKLDTLLKLVDIKGT 675
+ AAS +K+S+ ++LE +L GN MN + RG FKL +L L+D K T
Sbjct: 192 TPQLNAIIAASASVKSSQKLKQMLEIILALGNYMN-SSKRGAVYGFKLQSLDLLLDTKST 250
Query: 676 DGKTTLLHFV 685
D K TLLHF+
Sbjct: 251 DRKMTLLHFI 260
>pdb|2C77|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Ge2270 A
Length = 405
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 488 NSVNSVPKEPTTRKSVLPPVELENRVL-DPKKSQNIAILLRALNVTRDEVSEALLDGNPE 546
+ V V P TRK+V+ VE+ + L + N+ +LLR V+R+EV + P
Sbjct: 251 DEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRG--VSREEVERGQVLAKPG 308
Query: 547 SL 548
S+
Sbjct: 309 SI 310
>pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophilus Elongation
Factor Tu (Ef-Tu) In Complex With The Gtp Analogue
Gppnhp.
pdb|1HA3|A Chain A, Elongation Factor Tu In Complex With Aurodox
pdb|1HA3|B Chain B, Elongation Factor Tu In Complex With Aurodox
pdb|3FIC|Z Chain Z, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 30s Subunit
And The Ligands
pdb|2XQD|Z Chain Z, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
Length = 405
Score = 30.0 bits (66), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 488 NSVNSVPKEPTTRKSVLPPVELENRVL-DPKKSQNIAILLRALNVTRDEVSEALLDGNPE 546
+ V V P TRK+V+ VE+ + L + N+ +LLR V+R+EV + P
Sbjct: 251 DEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRG--VSREEVERGQVLAKPG 308
Query: 547 SL 548
S+
Sbjct: 309 SI 310
>pdb|2C78|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Pulvomycin
Length = 405
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 488 NSVNSVPKEPTTRKSVLPPVELENRVL-DPKKSQNIAILLRALNVTRDEVSEALLDGNPE 546
+ V V P TRK+V+ VE+ + L + N+ +LLR V+R+EV + P
Sbjct: 251 DEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRG--VSREEVERGQVLAKPG 308
Query: 547 SL 548
S+
Sbjct: 309 SI 310
>pdb|2Y0U|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0W|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
Length = 405
Score = 30.0 bits (66), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 488 NSVNSVPKEPTTRKSVLPPVELENRVL-DPKKSQNIAILLRALNVTRDEVSEALLDGNPE 546
+ V V P TRK+V+ VE+ + L + N+ +LLR V+R+EV + P
Sbjct: 251 DEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGVLLRG--VSREEVERGQVLAKPG 308
Query: 547 SL 548
S+
Sbjct: 309 SI 310
>pdb|4ABR|Z Chain Z, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 405
Score = 29.6 bits (65), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 488 NSVNSVPKEPTTRKSVLPPVELENRVL-DPKKSQNIAILLRALNVTRDEVSEALLDGNPE 546
+ V V P TRK+V+ VE+ + L + N+ +LLR V+R+EV + P
Sbjct: 251 DEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGLLLRG--VSREEVERGQVLAKPG 308
Query: 547 SL 548
S+
Sbjct: 309 SI 310
>pdb|1EFT|A Chain A, The Crystal Structure Of Elongation Factor Ef-Tu From
Thermus Aquaticus In The Gtp Conformation
Length = 405
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 488 NSVNSVPKEPTTRKSVLPPVELENRVL-DPKKSQNIAILLRALNVTRDEVSEALLDGNPE 546
+ V V P TRK+V+ VE+ + L + N+ +LLR V+R+EV + P
Sbjct: 251 DEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGLLLRG--VSREEVERGQVLAKPG 308
Query: 547 SL 548
S+
Sbjct: 309 SI 310
>pdb|1TTT|A Chain A, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|B Chain B, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|C Chain C, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TUI|A Chain A, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|B Chain B, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|C Chain C, Intact Elongation Factor Tu In Complex With Gdp
pdb|1B23|P Chain P, E. Coli Cysteinyl-Trna And T. Aquaticus Elongation Factor
Ef-Tu:gtp Ternary Complex
pdb|1ZC8|Y Chain Y, Coordinates Of Tmrna, Smpb, Ef-tu And H44 Fitted Into
Cryo- Em Map Of The 70s Ribosome And Tmrna Complex
pdb|1OB5|A Chain A, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|C Chain C, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|E Chain E, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
Length = 405
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 488 NSVNSVPKEPTTRKSVLPPVELENRVL-DPKKSQNIAILLRALNVTRDEVSEALLDGNPE 546
+ V V P TRK+V+ VE+ + L + N+ +LLR V+R+EV + P
Sbjct: 251 DEVEIVGLAPETRKTVVTGVEMHRKTLQEGIAGDNVGLLLRG--VSREEVERGQVLAKPG 308
Query: 547 SL 548
S+
Sbjct: 309 SI 310
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.128 0.355
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,558,474
Number of Sequences: 62578
Number of extensions: 666776
Number of successful extensions: 1379
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1362
Number of HSP's gapped (non-prelim): 16
length of query: 885
length of database: 14,973,337
effective HSP length: 107
effective length of query: 778
effective length of database: 8,277,491
effective search space: 6439887998
effective search space used: 6439887998
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)