Query 038630
Match_columns 885
No_of_seqs 218 out of 1034
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 13:00:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038630.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038630hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00498 FH2 Formin Homology 100.0 8.1E-70 1.8E-74 618.2 39.1 373 441-844 3-380 (432)
2 KOG1924 RhoA GTPase effector D 100.0 1.1E-66 2.5E-71 591.1 42.6 375 441-844 619-999 (1102)
3 PF02181 FH2: Formin Homology 100.0 4.2E-67 9.1E-72 583.6 34.3 363 441-835 4-370 (370)
4 KOG1922 Rho GTPase effector BN 100.0 4.3E-52 9.3E-57 506.7 39.8 427 442-880 390-825 (833)
5 KOG1925 Rac1 GTPase effector F 100.0 6E-49 1.3E-53 430.9 32.2 390 439-867 275-692 (817)
6 KOG1923 Rac1 GTPase effector F 100.0 3.6E-48 7.8E-53 443.9 31.3 366 441-843 364-735 (830)
7 KOG1924 RhoA GTPase effector D 98.1 0.00048 1E-08 82.1 22.8 29 442-470 634-663 (1102)
8 smart00498 FH2 Formin Homology 97.9 7E-05 1.5E-09 86.7 11.1 109 734-842 319-432 (432)
9 PHA03247 large tegument protei 94.8 8.8 0.00019 53.0 27.0 15 33-47 2684-2698(3151)
10 PHA03247 large tegument protei 94.5 32 0.00069 48.1 33.6 8 461-468 3024-3031(3151)
11 KOG3671 Actin regulatory prote 93.2 0.92 2E-05 53.1 12.4 29 442-470 475-503 (569)
12 PF08693 SKG6: Transmembrane a 86.4 0.14 2.9E-06 40.6 -1.1 26 115-140 8-33 (40)
13 KOG1962 B-cell receptor-associ 86.1 41 0.00089 36.2 16.6 52 783-852 162-213 (216)
14 KOG0994 Extracellular matrix g 85.0 31 0.00067 44.7 17.0 16 638-653 1473-1488(1758)
15 KOG1922 Rho GTPase effector BN 80.9 1.7E+02 0.0037 37.2 30.6 26 626-651 627-652 (833)
16 PF06809 NPDC1: Neural prolife 75.7 7.2 0.00016 43.7 6.9 11 235-245 291-301 (341)
17 PF01299 Lamp: Lysosome-associ 75.0 1.9 4.1E-05 48.1 2.4 28 118-145 273-300 (306)
18 PF01102 Glycophorin_A: Glycop 72.7 4.1 8.9E-05 40.0 3.7 28 118-146 67-94 (122)
19 PF03114 BAR: BAR domain; Int 72.1 58 0.0013 33.3 12.4 21 609-629 25-45 (229)
20 PF12325 TMF_TATA_bd: TATA ele 71.4 43 0.00093 32.8 10.4 50 782-835 64-113 (120)
21 KOG0994 Extracellular matrix g 70.9 83 0.0018 41.1 14.9 28 562-589 1509-1537(1758)
22 PF02480 Herpes_gE: Alphaherpe 70.7 1.4 3E-05 51.8 0.0 12 236-247 410-421 (439)
23 PF08336 P4Ha_N: Prolyl 4-Hydr 70.2 37 0.0008 33.3 9.9 70 771-844 14-83 (134)
24 PHA03281 envelope glycoprotein 70.0 17 0.00036 43.6 8.4 18 234-251 609-626 (642)
25 PHA03246 large tegument protei 69.0 5.2E+02 0.011 37.0 23.5 77 730-815 1730-1813(3095)
26 PF06013 WXG100: Proteins of 1 68.9 53 0.0012 28.2 9.7 66 775-846 7-72 (86)
27 cd07593 BAR_MUG137_fungi The B 66.9 7.5 0.00016 41.6 4.6 29 783-811 146-174 (215)
28 PRK10132 hypothetical protein; 66.6 33 0.00071 33.1 8.3 73 742-814 15-87 (108)
29 KOG1830 Wiskott Aldrich syndro 65.2 1.3E+02 0.0027 35.5 13.8 10 520-529 488-497 (518)
30 cd07623 BAR_SNX1_2 The Bin/Amp 64.0 1.4E+02 0.003 32.0 13.5 95 740-847 124-218 (224)
31 PRK10404 hypothetical protein; 63.9 41 0.0009 31.9 8.4 71 743-813 9-80 (101)
32 PF09325 Vps5: Vps5 C terminal 62.3 1.2E+02 0.0025 32.0 12.6 67 775-847 166-232 (236)
33 PF12273 RCR: Chitin synthesis 61.9 6.2 0.00014 38.6 2.7 23 125-147 7-29 (130)
34 PF02439 Adeno_E3_CR2: Adenovi 61.7 12 0.00025 29.6 3.5 20 121-140 7-26 (38)
35 PF08374 Protocadherin: Protoc 59.9 8.7 0.00019 41.0 3.4 25 115-139 36-60 (221)
36 PTZ00382 Variant-specific surf 59.6 2.7 5.8E-05 39.4 -0.3 26 118-143 69-94 (96)
37 KOG3091 Nuclear pore complex, 58.7 4E+02 0.0086 32.2 17.1 27 663-691 372-398 (508)
38 KOG2129 Uncharacterized conser 58.6 39 0.00084 39.4 8.4 90 744-837 251-343 (552)
39 PF08580 KAR9: Yeast cortical 58.1 4.8E+02 0.01 32.9 20.1 16 656-671 160-175 (683)
40 PF05957 DUF883: Bacterial pro 57.5 42 0.0009 30.9 7.2 71 743-813 2-73 (94)
41 cd07627 BAR_Vps5p The Bin/Amph 57.2 2.6E+02 0.0057 29.6 14.9 97 740-847 116-212 (216)
42 PF10234 Cluap1: Clusterin-ass 55.9 1.4E+02 0.003 33.3 11.9 31 659-689 106-144 (267)
43 PF10805 DUF2730: Protein of u 55.3 82 0.0018 30.0 8.9 69 736-807 32-100 (106)
44 PF13127 DUF3955: Protein of u 55.3 8.3 0.00018 33.6 2.0 39 1-42 1-39 (63)
45 PF06365 CD34_antigen: CD34/Po 54.0 15 0.00032 39.0 4.0 28 118-145 103-130 (202)
46 PF10455 BAR_2: Bin/amphiphysi 52.7 3.1E+02 0.0067 30.9 14.1 24 606-629 24-47 (289)
47 PF04478 Mid2: Mid2 like cell 52.1 4.1 8.9E-05 41.3 -0.4 35 116-150 48-85 (154)
48 PF15102 TMEM154: TMEM154 prot 51.9 16 0.00034 36.9 3.6 7 97-103 37-43 (146)
49 cd07637 BAR_ACAP3 The Bin/Amph 51.8 3.2E+02 0.007 29.0 16.8 78 771-848 86-167 (200)
50 KOG0260 RNA polymerase II, lar 51.0 1.3E+02 0.0029 39.5 11.9 14 168-181 1396-1409(1605)
51 PF14914 LRRC37AB_C: LRRC37A/B 49.5 21 0.00046 36.0 4.0 33 115-147 118-151 (154)
52 PF15176 LRR19-TM: Leucine-ric 49.4 23 0.00049 33.7 4.0 23 114-137 13-35 (102)
53 KOG4672 Uncharacterized conser 48.2 2.4E+02 0.0053 33.1 12.5 10 532-541 471-480 (487)
54 COG5178 PRP8 U5 snRNP spliceos 48.1 13 0.00029 47.6 2.8 17 625-641 628-644 (2365)
55 PF06120 Phage_HK97_TLTM: Tail 47.5 2.5E+02 0.0053 31.9 12.3 36 725-760 52-88 (301)
56 PF06013 WXG100: Proteins of 1 47.3 1.8E+02 0.0039 24.8 10.4 25 770-794 46-70 (86)
57 PF08855 DUF1825: Domain of un 46.7 2.8E+02 0.0062 26.9 11.0 95 740-841 6-107 (108)
58 KOG0933 Structural maintenance 46.6 1.8E+02 0.0039 37.8 12.0 32 620-653 599-630 (1174)
59 PF04156 IncA: IncA protein; 46.6 3.3E+02 0.0072 27.9 12.5 28 779-806 123-150 (191)
60 KOG3208 SNARE protein GS28 [In 46.3 50 0.0011 35.6 6.3 51 820-873 91-141 (231)
61 KOG0260 RNA polymerase II, lar 45.6 3.7E+02 0.008 35.8 14.4 9 118-126 1306-1314(1605)
62 PF04728 LPP: Lipoprotein leuc 45.3 1.8E+02 0.004 25.0 8.3 22 741-762 5-26 (56)
63 KOG0804 Cytoplasmic Zn-finger 45.2 71 0.0015 37.7 7.8 83 723-809 363-451 (493)
64 cd07617 BAR_Endophilin_B2 The 45.0 4.4E+02 0.0096 28.6 15.7 59 784-845 159-217 (220)
65 PF14610 DUF4448: Protein of u 44.8 7.1 0.00015 40.6 -0.1 31 116-146 156-186 (189)
66 PHA03283 envelope glycoprotein 44.6 1.1E+02 0.0023 37.0 9.3 10 138-147 423-432 (542)
67 PF05278 PEARLI-4: Arabidopsis 44.3 1.1E+02 0.0024 34.0 8.9 83 727-810 155-238 (269)
68 COG1579 Zn-ribbon protein, pos 44.1 1.3E+02 0.0027 33.1 9.2 74 737-810 50-127 (239)
69 KOG0995 Centromere-associated 43.3 7.2E+02 0.016 30.6 16.5 24 740-763 333-356 (581)
70 PF01034 Syndecan: Syndecan do 43.2 8 0.00017 33.8 0.0 23 126-148 20-42 (64)
71 KOG0963 Transcription factor/C 42.6 2.4E+02 0.0053 34.7 11.9 72 771-847 58-129 (629)
72 TIGR01167 LPXTG_anchor LPXTG-m 42.5 41 0.00089 25.0 3.8 9 136-144 24-32 (34)
73 cd07595 BAR_RhoGAP_Rich-like T 42.5 2.1E+02 0.0045 31.4 10.6 21 609-629 14-34 (244)
74 TIGR01478 STEVOR variant surfa 42.4 24 0.00052 39.2 3.5 16 130-145 273-288 (295)
75 PF04740 LXG: LXG domain of WX 42.4 4.1E+02 0.0088 27.5 13.0 40 770-809 44-84 (204)
76 cd07663 BAR_SNX5 The Bin/Amphi 41.8 2.9E+02 0.0062 30.0 11.3 42 770-811 21-62 (218)
77 PRK11637 AmiB activator; Provi 41.8 3E+02 0.0065 32.2 12.6 24 781-804 105-128 (428)
78 smart00503 SynN Syntaxin N-ter 41.4 3E+02 0.0064 25.6 10.8 60 743-802 12-73 (117)
79 PTZ00370 STEVOR; Provisional 41.4 26 0.00055 39.1 3.5 15 131-145 270-284 (296)
80 PF02439 Adeno_E3_CR2: Adenovi 41.1 41 0.0009 26.7 3.6 28 118-146 8-36 (38)
81 PF12325 TMF_TATA_bd: TATA ele 41.1 1.6E+02 0.0034 29.0 8.5 34 774-807 84-117 (120)
82 PF06084 Cytomega_TRL10: Cytom 41.0 24 0.00051 34.2 2.8 19 126-145 66-84 (150)
83 PF01544 CorA: CorA-like Mg2+ 40.7 2E+02 0.0043 30.9 10.3 68 740-807 152-220 (292)
84 PHA03291 envelope glycoprotein 40.7 1.6E+02 0.0035 33.9 9.5 33 116-148 287-320 (401)
85 PF05454 DAG1: Dystroglycan (D 40.6 9.2 0.0002 42.7 0.0 24 126-149 156-179 (290)
86 PF07544 Med9: RNA polymerase 40.6 2.2E+02 0.0047 26.0 8.9 37 730-766 12-48 (83)
87 KOG1853 LIS1-interacting prote 40.3 1.6E+02 0.0035 32.4 9.1 67 772-843 81-151 (333)
88 PF14523 Syntaxin_2: Syntaxin- 40.1 3E+02 0.0064 25.2 11.2 27 771-797 29-55 (102)
89 KOG4500 Rho/Rac GTPase guanine 40.1 30 0.00065 40.7 3.9 56 627-687 321-383 (604)
90 cd07667 BAR_SNX30 The Bin/Amph 40.0 3.4E+02 0.0073 29.9 11.6 14 771-784 132-145 (240)
91 KOG2391 Vacuolar sorting prote 39.2 1.3E+02 0.0028 34.5 8.5 69 742-815 242-315 (365)
92 cd07637 BAR_ACAP3 The Bin/Amph 38.9 1.4E+02 0.0031 31.7 8.5 20 741-760 4-23 (200)
93 PF04420 CHD5: CHD5-like prote 38.9 1.6E+02 0.0035 30.1 8.6 66 742-809 36-103 (161)
94 PF14712 Snapin_Pallidin: Snap 38.6 1.7E+02 0.0036 26.7 7.9 73 772-847 7-79 (92)
95 PHA03265 envelope glycoprotein 38.5 15 0.00032 41.8 1.2 33 116-148 348-380 (402)
96 PF01102 Glycophorin_A: Glycop 38.4 35 0.00075 33.6 3.5 34 116-150 62-95 (122)
97 PF08807 DUF1798: Bacterial do 38.3 3.8E+02 0.0083 26.0 11.1 47 743-795 4-50 (111)
98 PF05278 PEARLI-4: Arabidopsis 38.2 1.7E+02 0.0036 32.7 9.0 65 679-752 96-162 (269)
99 PF05659 RPW8: Arabidopsis bro 37.7 1.3E+02 0.0028 30.5 7.6 86 550-640 37-131 (147)
100 PF12768 Rax2: Cortical protei 37.5 28 0.00061 38.8 3.1 29 118-146 232-260 (281)
101 PF07439 DUF1515: Protein of u 36.7 1.7E+02 0.0038 28.4 7.7 52 743-795 5-56 (112)
102 KOG1118 Lysophosphatidic acid 36.4 4.3E+02 0.0093 30.2 11.8 11 782-792 190-200 (366)
103 TIGR00383 corA magnesium Mg(2+ 36.2 2.8E+02 0.006 30.7 10.8 12 680-691 134-145 (318)
104 PF06008 Laminin_I: Laminin Do 36.2 4.4E+02 0.0095 28.8 12.1 18 793-810 153-170 (264)
105 COG5178 PRP8 U5 snRNP spliceos 35.7 27 0.00058 45.1 2.8 10 514-523 392-401 (2365)
106 PF05377 FlaC_arch: Flagella a 35.5 2.4E+02 0.0051 24.3 7.5 19 742-760 3-21 (55)
107 cd07588 BAR_Amphiphysin The Bi 35.5 2.3E+02 0.0049 30.5 9.4 42 742-784 22-63 (211)
108 COG4575 ElaB Uncharacterized c 35.3 2.3E+02 0.005 27.3 8.2 69 742-813 11-83 (104)
109 PF10458 Val_tRNA-synt_C: Valy 35.0 1.2E+02 0.0027 26.3 6.1 20 744-763 2-21 (66)
110 KOG4302 Microtubule-associated 34.9 2.9E+02 0.0063 34.5 11.3 35 771-805 229-263 (660)
111 KOG4603 TBP-1 interacting prot 34.6 2.2E+02 0.0047 29.9 8.5 84 726-815 105-188 (201)
112 PF15120 DUF4561: Domain of un 34.6 1.5E+02 0.0032 31.0 7.4 85 743-845 3-87 (171)
113 PRK11637 AmiB activator; Provi 34.3 5.7E+02 0.012 29.9 13.4 23 776-798 107-129 (428)
114 PRK07021 fliL flagellar basal 34.0 52 0.0011 33.5 4.2 27 116-142 16-42 (162)
115 KOG2196 Nuclear porin [Nuclear 33.9 4.3E+02 0.0093 29.2 11.0 42 723-764 115-159 (254)
116 TIGR02131 phaP_Bmeg polyhydrox 33.9 4.5E+02 0.0097 26.7 10.3 43 798-843 119-161 (165)
117 cd07639 BAR_ACAP1 The Bin/Amph 33.5 3.7E+02 0.008 28.7 10.5 42 741-782 4-51 (200)
118 PF08700 Vps51: Vps51/Vps67; 33.4 3.5E+02 0.0075 24.1 9.3 62 738-807 18-79 (87)
119 PF09716 ETRAMP: Malarial earl 33.1 55 0.0012 30.0 3.8 28 118-145 56-83 (84)
120 cd07603 BAR_ACAPs The Bin/Amph 33.1 1.1E+02 0.0023 32.5 6.5 44 740-784 10-53 (200)
121 PRK04863 mukB cell division pr 33.1 6.9E+02 0.015 34.4 15.2 37 610-646 230-266 (1486)
122 PF07464 ApoLp-III: Apolipopho 33.0 3.5E+02 0.0076 27.8 9.9 75 724-798 77-151 (155)
123 PF12191 stn_TNFRSF12A: Tumour 32.6 14 0.00031 36.3 -0.1 18 130-147 90-107 (129)
124 PF08580 KAR9: Yeast cortical 32.3 5.3E+02 0.011 32.6 13.1 30 822-851 126-156 (683)
125 PF07200 Mod_r: Modifier of ru 32.3 3.9E+02 0.0085 26.4 10.1 45 790-845 100-144 (150)
126 PRK13802 bifunctional indole-3 32.3 3.1E+02 0.0067 34.6 11.1 161 511-673 141-363 (695)
127 PF11770 GAPT: GRB2-binding ad 32.1 30 0.00065 35.1 2.0 40 115-154 7-48 (158)
128 PF07464 ApoLp-III: Apolipopho 31.6 5.9E+02 0.013 26.2 11.4 43 800-842 106-149 (155)
129 smart00806 AIP3 Actin interact 31.6 2.3E+02 0.0051 33.5 9.3 36 772-807 250-285 (426)
130 PF09763 Sec3_C: Exocyst compl 31.6 1E+03 0.022 29.8 15.7 34 799-838 211-244 (701)
131 KOG3617 WD40 and TPR repeat-co 31.5 1.3E+03 0.028 30.1 20.3 252 548-847 1078-1359(1416)
132 PF14575 EphA2_TM: Ephrin type 31.4 44 0.00095 30.0 2.8 8 137-144 20-27 (75)
133 PF10265 DUF2217: Uncharacteri 31.2 69 0.0015 38.6 5.2 22 615-636 295-316 (514)
134 cd07596 BAR_SNX The Bin/Amphip 31.1 5.8E+02 0.013 26.0 20.0 68 774-847 147-214 (218)
135 cd00179 SynN Syntaxin N-termin 31.0 5.1E+02 0.011 25.3 11.1 31 771-801 40-70 (151)
136 cd07606 BAR_SFC_plant The Bin/ 30.9 6.8E+02 0.015 26.7 14.6 41 606-646 4-49 (202)
137 PTZ00208 65 kDa invariant surf 30.8 38 0.00082 39.4 2.8 18 132-149 401-419 (436)
138 PF15155 MRFAP1: MORF4 family- 30.8 3.5E+02 0.0077 26.3 8.7 89 714-802 23-118 (127)
139 PF12825 DUF3818: Domain of un 30.6 7.7E+02 0.017 28.4 13.2 42 637-690 64-105 (341)
140 cd07592 BAR_Endophilin_A The B 30.5 1.3E+02 0.0027 32.6 6.6 169 606-809 10-209 (223)
141 KOG2460 Signal recognition par 30.2 1.1E+03 0.024 28.9 16.7 65 778-843 421-487 (593)
142 cd07651 F-BAR_PombeCdc15_like 30.1 2.3E+02 0.005 30.3 8.6 69 774-842 152-228 (236)
143 cd07603 BAR_ACAPs The Bin/Amph 29.5 7.1E+02 0.015 26.4 18.0 26 607-632 6-31 (200)
144 cd07307 BAR The Bin/Amphiphysi 29.3 5.4E+02 0.012 25.0 17.4 57 782-844 131-187 (194)
145 PF14991 MLANA: Protein melan- 29.2 13 0.00027 36.1 -1.1 29 119-147 26-54 (118)
146 PF06008 Laminin_I: Laminin Do 29.2 5.5E+02 0.012 28.0 11.4 72 738-811 44-115 (264)
147 KOG1923 Rac1 GTPase effector F 29.2 1.5E+02 0.0032 37.4 7.5 27 627-653 558-584 (830)
148 cd07591 BAR_Rvs161p The Bin/Am 29.0 4.5E+02 0.0098 28.3 10.5 22 822-843 188-209 (224)
149 smart00806 AIP3 Actin interact 29.0 1.1E+03 0.023 28.3 18.8 39 606-646 81-119 (426)
150 PF07213 DAP10: DAP10 membrane 28.9 65 0.0014 29.5 3.4 28 118-145 35-63 (79)
151 PF03915 AIP3: Actin interacti 28.8 3.5E+02 0.0077 32.1 10.3 64 771-838 245-308 (424)
152 KOG4403 Cell surface glycoprot 28.5 6.9E+02 0.015 29.8 12.1 63 531-593 118-185 (575)
153 cd07602 BAR_RhoGAP_OPHN1-like 28.0 4.2E+02 0.0092 28.5 9.9 98 738-857 1-102 (207)
154 COG5185 HEC1 Protein involved 27.8 4.8E+02 0.01 31.4 10.8 93 681-807 198-292 (622)
155 KOG4302 Microtubule-associated 27.7 4.4E+02 0.0096 33.0 11.2 73 771-844 46-118 (660)
156 PF11932 DUF3450: Protein of u 27.6 2.2E+02 0.0048 30.9 7.9 57 739-800 42-98 (251)
157 cd07617 BAR_Endophilin_B2 The 27.6 4.4E+02 0.0095 28.6 10.0 13 738-750 146-158 (220)
158 PF10368 YkyA: Putative cell-w 27.0 7.1E+02 0.015 26.5 11.4 69 775-847 118-186 (204)
159 PF03915 AIP3: Actin interacti 26.9 2.2E+02 0.0047 33.8 8.2 67 778-844 291-363 (424)
160 PF07083 DUF1351: Protein of u 26.9 5.3E+02 0.011 27.6 10.5 45 744-788 47-91 (215)
161 PF05667 DUF812: Protein of un 26.3 5E+02 0.011 32.2 11.4 72 771-846 393-468 (594)
162 TIGR01010 BexC_CtrB_KpsE polys 26.2 5.7E+02 0.012 29.1 11.3 69 741-813 172-241 (362)
163 PF15003 HAUS2: HAUS augmin-li 26.1 9.2E+02 0.02 27.2 12.2 40 800-839 111-154 (277)
164 PRK09546 zntB zinc transporter 26.1 4.8E+02 0.01 29.3 10.5 12 680-691 142-153 (324)
165 PRK05696 fliL flagellar basal 26.0 59 0.0013 33.4 3.0 27 116-142 18-44 (170)
166 KOG0995 Centromere-associated 25.8 8.1E+02 0.018 30.2 12.5 30 600-629 361-390 (581)
167 PF05377 FlaC_arch: Flagella a 25.8 3.1E+02 0.0067 23.6 6.6 23 786-808 21-43 (55)
168 PF03999 MAP65_ASE1: Microtubu 25.7 52 0.0011 40.5 3.0 63 605-674 155-217 (619)
169 PF05615 THOC7: Tho complex su 25.5 3.4E+02 0.0073 26.7 8.2 36 772-807 81-116 (139)
170 cd07638 BAR_ACAP2 The Bin/Amph 25.5 3.8E+02 0.0083 28.6 9.0 96 738-857 1-96 (200)
171 COG3889 Predicted solute bindi 25.3 79 0.0017 39.7 4.3 16 128-143 856-871 (872)
172 PRK10476 multidrug resistance 25.2 7.2E+02 0.016 28.0 11.8 31 781-811 116-146 (346)
173 KOG4673 Transcription factor T 25.1 7E+02 0.015 31.5 11.8 50 787-840 905-954 (961)
174 PF10168 Nup88: Nuclear pore c 25.0 8E+02 0.017 31.2 13.0 52 782-834 596-648 (717)
175 cd07666 BAR_SNX7 The Bin/Amphi 24.8 4.9E+02 0.011 28.6 9.9 19 825-843 217-235 (243)
176 PRK11376 hlyE hemolysin E; Pro 24.6 5.9E+02 0.013 27.8 9.9 33 774-806 48-80 (303)
177 KOG2264 Exostosin EXT1L [Signa 24.5 2.4E+02 0.0051 34.6 7.7 34 774-807 116-149 (907)
178 PF12128 DUF3584: Protein of u 24.5 1.8E+03 0.04 29.6 19.1 27 784-810 357-383 (1201)
179 cd07601 BAR_APPL The Bin/Amphi 24.4 7.5E+02 0.016 26.7 11.0 86 741-850 4-93 (215)
180 KOG2140 Uncharacterized conser 24.3 1.4E+03 0.031 28.2 13.9 148 509-692 439-592 (739)
181 PF04108 APG17: Autophagy prot 24.1 1.2E+03 0.026 27.4 16.5 10 678-687 112-121 (412)
182 KOG3771 Amphiphysin [Intracell 23.8 1.3E+03 0.029 27.7 13.8 177 606-845 40-224 (460)
183 PRK15396 murein lipoprotein; P 23.7 4.6E+02 0.01 24.0 7.8 23 740-762 26-48 (78)
184 PRK11020 hypothetical protein; 23.7 4E+02 0.0087 26.1 7.8 47 744-793 3-52 (118)
185 KOG0810 SNARE protein Syntaxin 23.5 8.6E+02 0.019 27.6 11.7 34 771-804 74-107 (297)
186 cd07620 BAR_SH3BP1 The Bin/Amp 23.4 4.9E+02 0.011 29.0 9.5 21 609-629 14-34 (257)
187 cd07616 BAR_Endophilin_B1 The 23.4 9.9E+02 0.022 26.1 12.9 67 607-691 14-80 (229)
188 PRK14720 transcript cleavage f 23.2 1.1E+03 0.023 31.0 13.7 68 611-691 43-111 (906)
189 cd07621 BAR_SNX5_6 The Bin/Amp 23.2 4E+02 0.0087 28.9 8.7 40 770-809 22-61 (219)
190 PF08359 TetR_C_4: YsiA-like p 23.1 2.2E+02 0.0047 27.1 6.2 12 827-838 66-77 (133)
191 PF10158 LOH1CR12: Tumour supp 23.0 4.3E+02 0.0093 26.4 8.3 69 730-807 40-108 (131)
192 PF05337 CSF-1: Macrophage col 22.9 28 0.0006 38.6 0.0 22 132-153 240-261 (285)
193 cd07665 BAR_SNX1 The Bin/Amphi 22.8 9.2E+02 0.02 26.4 11.4 70 771-847 159-228 (234)
194 TIGR03778 VPDSG_CTERM VPDSG-CT 22.8 90 0.002 22.9 2.5 19 126-144 7-25 (26)
195 PF12455 Dynactin: Dynein asso 22.6 1.9E+02 0.0042 32.0 6.4 27 821-847 247-273 (274)
196 KOG0216 RNA polymerase I, seco 22.5 2.4E+02 0.0052 36.0 7.6 33 631-663 408-441 (1111)
197 TIGR01495 ETRAMP Plasmodium ri 22.4 93 0.002 28.8 3.3 30 118-147 52-81 (85)
198 PF10147 CR6_interact: Growth 22.4 1E+03 0.022 25.9 12.4 67 774-843 130-200 (217)
199 cd07618 BAR_Rich1 The Bin/Amph 22.3 7.7E+02 0.017 27.2 10.8 14 782-795 170-183 (246)
200 PF06120 Phage_HK97_TLTM: Tail 22.3 4.8E+02 0.01 29.7 9.4 23 740-762 82-104 (301)
201 TIGR02132 phaR_Bmeg polyhydrox 22.2 9.4E+02 0.02 25.5 10.6 53 736-789 111-163 (189)
202 COG0497 RecN ATPase involved i 22.0 1.1E+03 0.024 29.1 12.9 17 777-793 323-339 (557)
203 PF10112 Halogen_Hydrol: 5-bro 21.9 9.1E+02 0.02 25.1 11.9 23 821-843 156-178 (199)
204 TIGR03185 DNA_S_dndD DNA sulfu 21.9 7.6E+02 0.017 30.6 12.0 119 718-850 179-321 (650)
205 cd07632 BAR_APPL2 The Bin/Amph 21.8 1E+03 0.023 25.8 11.5 45 771-815 90-134 (215)
206 PF15345 TMEM51: Transmembrane 21.8 67 0.0015 34.9 2.5 32 118-149 58-89 (233)
207 KOG2528 Sorting nexin SNX9/SH3 21.8 1.3E+02 0.0029 35.6 5.0 25 791-815 393-417 (490)
208 KOG2773 Apoptosis antagonizing 21.6 1.5E+03 0.031 27.4 13.2 98 770-873 275-377 (483)
209 KOG0976 Rho/Rac1-interacting s 21.6 1.8E+03 0.039 28.7 14.4 36 614-652 163-198 (1265)
210 PHA00728 hypothetical protein 21.5 2.2E+02 0.0048 28.1 5.7 26 740-765 6-31 (151)
211 PF10376 Mei5: Double-strand r 21.4 3.1E+02 0.0068 29.7 7.5 70 744-813 143-215 (221)
212 PF12806 Acyl-CoA_dh_C: Acetyl 21.4 3.4E+02 0.0074 26.3 7.3 59 773-834 2-64 (130)
213 COG1382 GimC Prefoldin, chaper 21.4 6.8E+02 0.015 24.8 9.0 34 772-805 70-103 (119)
214 KOG4025 Putative apoptosis rel 21.4 3.3E+02 0.0072 28.4 7.2 88 746-841 93-180 (207)
215 PF00913 Trypan_glycop: Trypan 21.2 1.9E+02 0.0041 32.5 6.2 68 721-788 28-95 (370)
216 PF10191 COG7: Golgi complex c 21.0 1.5E+03 0.032 29.0 14.4 62 577-642 151-213 (766)
217 PF07106 TBPIP: Tat binding pr 21.0 8.8E+02 0.019 24.6 11.5 57 741-807 81-137 (169)
218 KOG0251 Clathrin assembly prot 20.9 9.1E+02 0.02 29.3 11.9 12 665-676 105-116 (491)
219 PRK10884 SH3 domain-containing 20.9 4.5E+02 0.0098 28.1 8.5 19 742-760 96-114 (206)
220 PF04740 LXG: LXG domain of WX 20.9 9.3E+02 0.02 24.8 16.6 24 822-845 170-193 (204)
221 KOG4360 Uncharacterized coiled 20.8 3.2E+02 0.0069 33.1 7.8 34 778-811 260-293 (596)
222 COG4942 Membrane-bound metallo 20.4 1.5E+03 0.032 27.0 13.7 103 741-848 61-169 (420)
223 cd07636 BAR_GRAF The Bin/Amphi 20.3 7E+02 0.015 26.9 9.7 97 746-857 2-102 (207)
224 PRK09039 hypothetical protein; 20.2 6.4E+02 0.014 28.9 10.1 27 740-766 138-164 (343)
225 PHA02562 46 endonuclease subun 20.2 9.6E+02 0.021 28.7 12.2 15 781-795 257-271 (562)
226 KOG2675 Adenylate cyclase-asso 20.2 1.2E+02 0.0025 36.0 4.1 38 78-129 234-271 (480)
227 KOG0243 Kinesin-like protein [ 20.1 4.1E+02 0.0089 34.9 9.2 104 741-846 406-518 (1041)
No 1
>smart00498 FH2 Formin Homology 2 Domain. FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.
Probab=100.00 E-value=8.1e-70 Score=618.19 Aligned_cols=373 Identities=38% Similarity=0.575 Sum_probs=337.5
Q ss_pred CCCCCccccccccccccccccCCceecccccccccCCHHHHHHhhccCCCCCCCCCC-CCcCCC-CCCccccccccChhh
Q 038630 441 TDGAKPKLKALHWDKVRATSDRATVWDQLKSSSFQLNEDMMESLFGCNSVNSVPKEP-TTRKSV-LPPVELENRVLDPKK 518 (885)
Q Consensus 441 ~~~pK~KlK~LhW~kV~~~~~k~TIW~~l~~~~~~lD~d~LE~LF~~k~~~~~~K~~-~~kk~v-~~~~~k~isVLD~KR 518 (885)
..+|++|||+|||++|+..++++|||+++++.. ++|+++||++|+.+......+.. ..++.. ..+..+.++|||+||
T Consensus 3 ~~~P~~klK~l~W~ki~~~~~~~tvW~~i~~~~-~~d~~~lE~lF~~k~~~~~~~~~~~~~~~~~~~~~~~~v~ild~kr 81 (432)
T smart00498 3 EPKPKKKLKPLHWDKLNPLDPRGTVWDKIDENS-EGDLDELEELFAAKEKTKSASKDVSEKKSILKKKVSQEFKILDPKR 81 (432)
T ss_pred CCCCCCCCcCcCceeCCCccccCChhhhcCccc-ccCHHHHHHHhCcCccccCccccccccccccccccccceEeechhH
Confidence 468999999999999999999999999999876 79999999999987654432221 111111 123457789999999
Q ss_pred HHHHHHHhhhcCCCHHHHHHHHHcCCCCCCCHHHHHHHHhcCCCHHHHHHHHhhhcC-cCCCChHHHHHHHHhCcccHHH
Q 038630 519 SQNIAILLRALNVTRDEVSEALLDGNPESLGAELLETLVKMAPTKEEEIKLREYKGD-ILKLGSAERFLKAVLDIPFAFK 597 (885)
Q Consensus 519 aqNIsI~L~klkls~eeI~~AIl~~D~~~L~~E~Le~Llk~lPT~EEi~~Lk~~~gD-~~~L~~aEqFl~~L~~IP~l~~ 597 (885)
+|||+|+|++|+++.++|++||+.||...|+.|.|+.|++++||.||+++|++|.|+ .+.|+++|||+++|++||++.+
T Consensus 82 s~ni~I~L~~l~~~~~ei~~ai~~~d~~~l~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~~L~~~Eqfl~~l~~ip~~~~ 161 (432)
T smart00498 82 SQNLAILLRKLHMSYEEICEAILEGDEDVLSVDLLEQLLKYAPTKEELKKLREYKEEDPEELARAEQFLLLISNIPYLEE 161 (432)
T ss_pred HhhHHHHHHhcCCCHHHHHHHHHhcChhhCCHHHHHHHHhhCcCHHHHHHHHHhcccchhhcchHHHHHHHHhCCCCHHH
Confidence 999999999999999999999999999999999999999999999999999999987 6999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhhccccccCCCCCceeeeeccchhcccccccCCC
Q 038630 598 RVEAMLYRANFDAEVKYLRKSYQTLEAASEELKNSRLFLKLLEAVLKTGNRMNVGTNRGDAKAFKLDTLLKLVDIKGTDG 677 (885)
Q Consensus 598 RL~allfk~~F~~~v~~l~~~l~~l~~A~~eLr~S~~L~~lL~~VLaiGN~LN~gt~rG~A~GFkLdSL~KL~dtKs~D~ 677 (885)
||+||+|+.+|++.+++|++.|+++..||++|++|+.|+.||++||++|||||+|+.||+|+||+|++|.||.|||++|+
T Consensus 162 Rl~~~~f~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~lL~~iL~~GN~mN~g~~rg~A~GFkL~sL~KL~d~Ks~d~ 241 (432)
T smart00498 162 RLNALLFKANFEEEVEDLKPQLEKVEAACEELRESKKFRKLLELILAIGNYMNSGSRRGQAYGFKLSSLLKLSDVKSADN 241 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhCcccCCCcCCCcceeeHHHHHHHHhhhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccHHHHHHHHHHHHhCCCCCCccccccccCccchHHHHhhchhhhcccccchhhhhhhcCCCHHHHHHHHHHHHHHHHH
Q 038630 678 KTTLLHFVVQEIIRAEGAGTKSTEVNVESKNSMREDEFKKQGLEVVSGLSRDLSNVKKAAGMDSDVLSSYVMKLEMGLEK 757 (885)
Q Consensus 678 k~TLLhyLvq~Iir~e~~~L~~~n~~~~~~~~~~~E~~~k~gl~~V~~l~~EL~~V~kAAkvdld~L~~dv~kLe~gl~k 757 (885)
++|||||||+.|.++++ .+.+|.+||.+|..|++++ ++|.+++++|+++++.
T Consensus 242 k~tLLhylv~~i~~~~p---------------------------~~~~f~~el~~v~~askvs-~~l~~~~~~l~~~~~~ 293 (432)
T smart00498 242 KTTLLHFLVKIIRKKYP---------------------------DLLDFYSDLHHLDKAKVNL-EQLEKDVKQLERQIKN 293 (432)
T ss_pred CccHHHHHHHHHHHhCh---------------------------hhccchhhhccHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 99999999998876542 2556889999999999999 9999999999999999
Q ss_pred HHHHHHhcC--CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccCChhhhHHHHHHHHHHHH
Q 038630 758 VRLVLQYEK--PDMQGKFFHSMKMFLKEAEEEIARIKADERMALSLVKEVTEYFHGNAAKEEAHPFRIFMIVRDFLAILD 835 (885)
Q Consensus 758 v~~~Lq~~~--~~~~d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~~YFGEd~~k~e~~P~efF~il~dFl~~ld 835 (885)
++..+.... ...+|+|..+|..|+..|..+++.|+..++++.+.|++++.||||++.. ..+++||++|.+|+..|.
T Consensus 294 ~e~~~~~l~~~~~~~d~f~~~m~~F~~~a~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~--~~~~efF~~f~~F~~~f~ 371 (432)
T smart00498 294 LETDLGGLSDPENLDDKFIEVMKPFLKAAKEKYDKLQKDLSDLKTRFEKLVEYYGEDPKD--TSPEEFFKDFNEFLKEFS 371 (432)
T ss_pred HHHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC--CCHHHHHHHHHHHHHHHH
Confidence 887654433 2235899999999999999999999999999999999999999999886 468999999999999999
Q ss_pred HHHHHHHHH
Q 038630 836 HVCKEVGKM 844 (885)
Q Consensus 836 ka~kE~~k~ 844 (885)
+|++|+.+.
T Consensus 372 ka~~en~~~ 380 (432)
T smart00498 372 KAAEENIKK 380 (432)
T ss_pred HHHHHHHHH
Confidence 999988763
No 2
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=100.00 E-value=1.1e-66 Score=591.10 Aligned_cols=375 Identities=25% Similarity=0.370 Sum_probs=338.2
Q ss_pred CCCCCccccccccccccccc-cCCceecccccccccCC--HHHHHHhhccCCCCCCCCCCC-CcCCCCCCccccccccCh
Q 038630 441 TDGAKPKLKALHWDKVRATS-DRATVWDQLKSSSFQLN--EDMMESLFGCNSVNSVPKEPT-TRKSVLPPVELENRVLDP 516 (885)
Q Consensus 441 ~~~pK~KlK~LhW~kV~~~~-~k~TIW~~l~~~~~~lD--~d~LE~LF~~k~~~~~~K~~~-~kk~v~~~~~k~isVLD~ 516 (885)
...++..||+++|.+|.... .++.+|-.++++.++-| ++.|+..|+++....+..+++ .++.+..++.++..|||.
T Consensus 619 ~~k~e~~Mrr~nW~kI~p~d~s~~cFWvkv~Edk~en~dlfakL~~~Fatq~k~~k~~e~~eekkt~~kKk~kel~ilDs 698 (1102)
T KOG1924|consen 619 VYKPEVPMRRFNWSKIVPRDLSENCFWVKVNEDKLENDDLFAKLALKFATQPKVKKEQEGGEEKKTGTKKKVKELRILDS 698 (1102)
T ss_pred cCCCCCccccCCccccCccccCccceeeecchhhccchHHHHHHHHHhhccccccccccccccccchhhhhhhhheecch
Confidence 45777789999999998876 46899999998877543 467889999986554432222 233334566778899999
Q ss_pred hhHHHHHHHhhhcCCCHHHHHHHHHcCCCCCCCHHHHHHHHhcCCCHHHHHHHHhhhcCcCCCChHHHHHHHHhCcccHH
Q 038630 517 KKSQNIAILLRALNVTRDEVSEALLDGNPESLGAELLETLVKMAPTKEEEIKLREYKGDILKLGSAERFLKAVLDIPFAF 596 (885)
Q Consensus 517 KRaqNIsI~L~klkls~eeI~~AIl~~D~~~L~~E~Le~Llk~lPT~EEi~~Lk~~~gD~~~L~~aEqFl~~L~~IP~l~ 596 (885)
|.+||++|+|..|+|+++||+.+|+++|+++|+...|++|++.+|.+|-+..|.+++...+.|.+.|||...|..|+++.
T Consensus 699 KtaQnLsIflgS~rmpyeeik~~ILevne~vLse~~iqnLik~lPe~E~l~~L~e~Kaeye~l~e~EQF~vvm~~vkrL~ 778 (1102)
T KOG1924|consen 699 KTAQNLSIFLGSFRMPYEEIKNVILEVNEDVLSESMIQNLIKHLPEQEQLNKLSELKAEYEDLPEPEQFVVVMSQVKRLR 778 (1102)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHhhccHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCCCHHHHhHHHhhccccC
Confidence 99999999999999999999999999999999999999999999999999999999888899999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhhccccccCCCCCceeeeeccchhcccccccCC
Q 038630 597 KRVEAMLYRANFDAEVKYLRKSYQTLEAASEELKNSRLFLKLLEAVLKTGNRMNVGTNRGDAKAFKLDTLLKLVDIKGTD 676 (885)
Q Consensus 597 ~RL~allfk~~F~~~v~~l~~~l~~l~~A~~eLr~S~~L~~lL~~VLaiGN~LN~gt~rG~A~GFkLdSL~KL~dtKs~D 676 (885)
-||.+++||.+|.+.+++|++.|-.+.+||+|||+|+.|.+||++||.+|||||+|+...+|+||.+++|.||.|||+.|
T Consensus 779 pRL~~ilFKl~fse~vnniKP~i~avt~ACEE~rkSesFs~lLeLvLl~GNyMn~gSrNa~afgF~is~L~kL~dTKsaD 858 (1102)
T KOG1924|consen 779 PRLSAILFKLTFSEQVNNIKPDIVAVTAACEELRKSESFSKLLELVLLVGNYMNSGSRNAQAFGFNISFLCKLRDTKSAD 858 (1102)
T ss_pred hhHHHHHHHhhHHHHHhhcChHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcccccccccchhhccchHHHHhhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999998999999999999999999999
Q ss_pred CCccHHHHHHHHHHHHhCCCCCCccccccccCccchHHHHhhchhhhcccccchhhhhhhcCCCHHHHHHHHHHHHHHHH
Q 038630 677 GKTTLLHFVVQEIIRAEGAGTKSTEVNVESKNSMREDEFKKQGLEVVSGLSRDLSNVKKAAGMDSDVLSSYVMKLEMGLE 756 (885)
Q Consensus 677 ~k~TLLhyLvq~Iir~e~~~L~~~n~~~~~~~~~~~E~~~k~gl~~V~~l~~EL~~V~kAAkvdld~L~~dv~kLe~gl~ 756 (885)
+|+||||||++.+.+. ++.+.+|.+||.+|.+|++|+.+.|...+..++..++
T Consensus 859 qk~TLLHfLae~~e~k---------------------------ypd~l~F~ddl~hv~kaSrvnad~ikK~~~~m~~~ik 911 (1102)
T KOG1924|consen 859 QKTTLLHFLAEICEEK---------------------------YPDILKFPDDLEHVEKASRVNADEIKKNLQQMENQIK 911 (1102)
T ss_pred hhhHHHHHHHHHHHHh---------------------------ChhhhcchhhHHHHHhhccccHHHHHHHHHHHHHHHH
Confidence 9999999999754332 2446789999999999999999999999999999999
Q ss_pred HHHHHHHhcC--CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccCChhhhHHHHHHHHHHH
Q 038630 757 KVRLVLQYEK--PDMQGKFFHSMKMFLKEAEEEIARIKADERMALSLVKEVTEYFHGNAAKEEAHPFRIFMIVRDFLAIL 834 (885)
Q Consensus 757 kv~~~Lq~~~--~~~~d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~~YFGEd~~k~e~~P~efF~il~dFl~~l 834 (885)
+++..++..+ ....|+|.++|..|.++|.+++..|...+.+|++.|++|.+||.-|++|. .-++||+.+++|-+.|
T Consensus 912 ~Le~dlk~~~~~~~e~dkF~ekM~~F~e~a~eq~~~ls~M~~~M~~lye~L~eYyaFd~kky--smEEFFaDi~tFrnaf 989 (1102)
T KOG1924|consen 912 KLERDLKNFKIAGNEHDKFVEKMTSFHEKAREQYSKLSSMHGNMEKLYESLGEYYAFDPKKY--SMEEFFADIRTFRNAF 989 (1102)
T ss_pred HHHHHHHhcCCCCcchhhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHeecCcccC--cHHHHHHHHHHHHHHH
Confidence 9999998876 22468999999999999999999999999999999999999999999985 4589999999999999
Q ss_pred HHHHHHHHHH
Q 038630 835 DHVCKEVGKM 844 (885)
Q Consensus 835 dka~kE~~k~ 844 (885)
.+|.+|+.+.
T Consensus 990 ~ea~~en~kr 999 (1102)
T KOG1924|consen 990 LEAVAENEKR 999 (1102)
T ss_pred HHHHHHHHHH
Confidence 9999888764
No 3
>PF02181 FH2: Formin Homology 2 Domain; InterPro: IPR015425 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis []. Formins are multidomain proteins that interact with diverse signalling molecules and cytoskeletal proteins, although some formins have been assigned functions within the nucleus. Formins are characterised by the presence of three FH domains (FH1, FH2 and FH3), although members of the formin family do not necessarily contain all three domains []. The proline-rich FH1 domain mediates interactions with a variety of proteins, including the actin-binding protein profilin, SH3 (Src homology 3) domain proteins, and WW domain proteins. The FH2 domain is required for the self-association of formin proteins through the ability of FH2 domains to directly bind each other [], and may also act to inhibit actin polymerisation []. The FH3 domain (IPR010472 from INTERPRO) is less well conserved and may be important for determining intracellular localisation of formin family proteins. In addition, some formins can contain a GTPase-binding domain (GBD) (IPR010473 from INTERPRO) required for binding to Rho small GTPases, and a C-terminal conserved Dia-autoregulatory domain (DAD). This entry represents the FH2 domain, which was shown by X-ray crystallography to have an elongated, crescent shape containing three helical subdomains [].; PDB: 1Y64_B 1UX4_A 1UX5_A 3O4X_H 3OBV_E 1V9D_D 2Z6E_B 2J1D_G.
Probab=100.00 E-value=4.2e-67 Score=583.64 Aligned_cols=363 Identities=35% Similarity=0.565 Sum_probs=311.7
Q ss_pred CCCCCccccccccccccccccCCceeccccccc--ccCCHHHHHHhhccCCCCCCCCCCCCcCCCCCCccccccccChhh
Q 038630 441 TDGAKPKLKALHWDKVRATSDRATVWDQLKSSS--FQLNEDMMESLFGCNSVNSVPKEPTTRKSVLPPVELENRVLDPKK 518 (885)
Q Consensus 441 ~~~pK~KlK~LhW~kV~~~~~k~TIW~~l~~~~--~~lD~d~LE~LF~~k~~~~~~K~~~~kk~v~~~~~k~isVLD~KR 518 (885)
..+|+.|||+|||++|+..+.++|||+++++.+ ..+|+++||++|+.+......+. ......++.+.++|||+||
T Consensus 4 ~~~p~~k~k~l~W~~i~~~~~~~tiW~~~~~~~~~~~~d~~~le~~F~~~~~~~~~~~---~~~~~~~~~~~~~iLd~kr 80 (370)
T PF02181_consen 4 KPKPKKKLKPLHWDKIPNSKIKGTIWSKIDEDEFNIDIDFEELEELFAKKEKEKKSKK---KQASKKKKKKKISILDPKR 80 (370)
T ss_dssp ----SS-B------EESSGGCTTSCCCCTCCHHHHCTSHHHHHHHHTBSCECHHHH-------HCCCCTTCCESSS-HHH
T ss_pred CCCCCCCCcCCCceecCcccccCCccccCcccccchhhhHHHHHHHhccccccccccc---cccccccccccccccchHH
Confidence 468999999999999999999999999998875 46889999999999876532111 0011234556789999999
Q ss_pred HHHHHHHhhhcCCCHHHHHHHHHcCCCCCCCHHHHHHHHhcCCCHHHHHHHHhhhcCcCCCChHHHHHHHHhCcccHHHH
Q 038630 519 SQNIAILLRALNVTRDEVSEALLDGNPESLGAELLETLVKMAPTKEEEIKLREYKGDILKLGSAERFLKAVLDIPFAFKR 598 (885)
Q Consensus 519 aqNIsI~L~klkls~eeI~~AIl~~D~~~L~~E~Le~Llk~lPT~EEi~~Lk~~~gD~~~L~~aEqFl~~L~~IP~l~~R 598 (885)
+|||+|+|+++++++++|++||+.||...|+.|.|+.|++++||.||+++|++|.++...|+++|+|+++|+.||++++|
T Consensus 81 ~~ni~I~L~~~~~~~~~l~~ai~~~d~~~l~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~L~~~E~f~~~l~~ip~~~~r 160 (370)
T PF02181_consen 81 SQNIGIVLKKFKLSPEELIQAILNLDEEVLTEELLENLLKILPTPEEIEALKAYKGDPATLGPAEQFLLELSKIPRLKER 160 (370)
T ss_dssp HHHHHHHHHHHTS-HHHHHHHHHTTTTCCCTHHHHHHHHHHCGGHHHHHHHHCTCTSGTTB-HHHHHHHHHTTSTTHHHH
T ss_pred HHHHHHHhhccCCCHHHHHHHHHccCccccchHHHHHHHhcCCCchHHHHHHHHhccHHhhccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhhccccccCCCCCceeeeeccchhcccccccCCCC
Q 038630 599 VEAMLYRANFDAEVKYLRKSYQTLEAASEELKNSRLFLKLLEAVLKTGNRMNVGTNRGDAKAFKLDTLLKLVDIKGTDGK 678 (885)
Q Consensus 599 L~allfk~~F~~~v~~l~~~l~~l~~A~~eLr~S~~L~~lL~~VLaiGN~LN~gt~rG~A~GFkLdSL~KL~dtKs~D~k 678 (885)
|+||+|+.+|++++++|...|+.+..||++|++|..|+++|++||++|||||+|+.+|+|.||+|++|.||.+||++|++
T Consensus 161 l~~~~~~~~f~~~~~~l~~~l~~l~~a~~~l~~S~~l~~lL~~iL~~GN~lN~g~~~g~A~GF~L~sL~kL~~~Ks~d~~ 240 (370)
T PF02181_consen 161 LEALLFKSEFEEQLEELKEKLEKLEAACEELRESKSLRRLLEIILAIGNFLNGGTPRGNAKGFKLSSLSKLKDTKSNDNK 240 (370)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSTCSTTCS-SEE-GGGGGGCCCSB-STTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhccCCCccccceecHHhHHHHHhcccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHHhCCCCCCccccccccCccchHHHHhhchhhhcccccchhhhhhhcCCCHHHHHHHHHHHHHHHHHH
Q 038630 679 TTLLHFVVQEIIRAEGAGTKSTEVNVESKNSMREDEFKKQGLEVVSGLSRDLSNVKKAAGMDSDVLSSYVMKLEMGLEKV 758 (885)
Q Consensus 679 ~TLLhyLvq~Iir~e~~~L~~~n~~~~~~~~~~~E~~~k~gl~~V~~l~~EL~~V~kAAkvdld~L~~dv~kLe~gl~kv 758 (885)
+|||||||+.+.++ .+.+..|.+||.+|..|+++++++|.+++.+|+++++++
T Consensus 241 ~tLL~~l~~~~~~~---------------------------~~~~~~~~~eL~~v~~a~~~~~~~l~~~i~~l~~~~~~~ 293 (370)
T PF02181_consen 241 TTLLHYLVKIVEEK---------------------------FPDLLDLEDELSSVEKASKVSLDELEQDIKELEKGLEKI 293 (370)
T ss_dssp SBHHHHHHHHHHTT---------------------------SGGGGGHHHHTTTHHHCCTS-HHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhc---------------------------ChHHhccHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999876532 123566789999999999999999999999999999999
Q ss_pred HHHHHhcCC--CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccCChhhhHHHHHHHHHHHH
Q 038630 759 RLVLQYEKP--DMQGKFFHSMKMFLKEAEEEIARIKADERMALSLVKEVTEYFHGNAAKEEAHPFRIFMIVRDFLAILD 835 (885)
Q Consensus 759 ~~~Lq~~~~--~~~d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~~YFGEd~~k~e~~P~efF~il~dFl~~ld 835 (885)
+.+++.... +.++.|.++|..|++.++.++..|++.+.++.+.|++++.||||++.. ..+++||++|.+|+..|+
T Consensus 294 ~~~l~~~~~~~~~~~~f~~~~~~f~~~~~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~--~~~~~ff~~l~~F~~~fk 370 (370)
T PF02181_consen 294 KKELEAIEKDEEDDDKFKEKMKEFLEEAETKLDELQELYEELEEAFKQLLQYFGEDPKK--MSPEEFFKILSQFIDMFK 370 (370)
T ss_dssp HHHHHHCCTTSSTT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TTC--CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC--CCHHHHHHHHHHHHHHhC
Confidence 999988764 456899999999999999999999999999999999999999999874 578999999999999885
No 4
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]
Probab=100.00 E-value=4.3e-52 Score=506.71 Aligned_cols=427 Identities=41% Similarity=0.604 Sum_probs=376.5
Q ss_pred CCCCccccccccccccccccCCceecccccccccCCH---HHHHHhhccCCCCCCCCC-CCCcCCCCCCccccccccChh
Q 038630 442 DGAKPKLKALHWDKVRATSDRATVWDQLKSSSFQLNE---DMMESLFGCNSVNSVPKE-PTTRKSVLPPVELENRVLDPK 517 (885)
Q Consensus 442 ~~pK~KlK~LhW~kV~~~~~k~TIW~~l~~~~~~lD~---d~LE~LF~~k~~~~~~K~-~~~kk~v~~~~~k~isVLD~K 517 (885)
..++.+||++||+++.....+.++|+.+....+..|. +++|.+|........... ++..........+++.|+|++
T Consensus 390 ~~p~~~lk~l~wdk~~~~~~~~~~w~~~~~~~~~~~~~~~~~~e~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~r 469 (833)
T KOG1922|consen 390 AQPKNKLKPLHWDKTRGSSKRSMVWSEVDSSSSLFDPPLSELMEALFGLVKFLPSDNGGDTGREEKTAVEKKRLKVLDPR 469 (833)
T ss_pred CCCCCCCCCccccccCCCCccCCCCCccccCCcCCCCCcccccccchhhhhcccCCCCCCCccccccccccccccccCCC
Confidence 6789999999999999999999999999988877777 899999976644322111 011111112233678999999
Q ss_pred hHHHHHHHhhhcCCCHHHHHHHHHcCCCCCCCHHHHHHHHhcCCCHHHHHHHHhhhcCcCCCChHHHHHHH-HhCcccHH
Q 038630 518 KSQNIAILLRALNVTRDEVSEALLDGNPESLGAELLETLVKMAPTKEEEIKLREYKGDILKLGSAERFLKA-VLDIPFAF 596 (885)
Q Consensus 518 RaqNIsI~L~klkls~eeI~~AIl~~D~~~L~~E~Le~Llk~lPT~EEi~~Lk~~~gD~~~L~~aEqFl~~-L~~IP~l~ 596 (885)
+.||++|+|+.+++..+++++||+.+|++.+..++|+.|.+++|+++|..+++.|.++...|+.+|+|+.+ +..||++.
T Consensus 470 ~~~n~~ill~sl~~~~~~~~~a~~~~~~~~~~~~~l~~l~~~~pt~~E~~~l~~~~~~~~~l~~~e~~~~~~~~~ip~~~ 549 (833)
T KOG1922|consen 470 RPQNIAILLSSLNMPTEDIPQALLELDDSVLGLDQLEKLLKFAPTKEEETKLKEESGDPLTLGDAEKFFFEELSGIPEFE 549 (833)
T ss_pred CccceeeehhhcCCchHHHHHHHhccCccccCHHHHHHHHccCCChhHHHHHHhhcCCCCccchHHHHHHHHhhcchHHH
Confidence 99999999999999999999999999999999999999999999999999999999988999999999888 56799999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhhccccccCCCCCceeeeeccchhcccccccCC
Q 038630 597 KRVEAMLYRANFDAEVKYLRKSYQTLEAASEELKNSRLFLKLLEAVLKTGNRMNVGTNRGDAKAFKLDTLLKLVDIKGTD 676 (885)
Q Consensus 597 ~RL~allfk~~F~~~v~~l~~~l~~l~~A~~eLr~S~~L~~lL~~VLaiGN~LN~gt~rG~A~GFkLdSL~KL~dtKs~D 676 (885)
.|+++++|+..|...+.++.+.+.++..||++++++.+|.+++++||..|||||.|+.||+|+||+|++|.||.|+|+.+
T Consensus 550 ~~~~~~~f~~~~~~~v~~l~~~~~~~~~~~~~l~~~~~~~~~~e~il~~Gn~mN~g~~rg~a~~f~l~~l~kl~d~ks~~ 629 (833)
T KOG1922|consen 550 ERLQALSFRSKFSEEVTALKKKLETVEVASKELLESKKFLKILEIILAAGNRMNAGTNRGSAHGFKLDALLKLSDVKSSD 629 (833)
T ss_pred HHHHHhhhhhhccchHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcccccccccccccchhhHHHHhhhhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccHHHHHHHHHHHHhCCCCCCccccccccCccchHHHHhhchhhhcccccchhhhhhhcCCCHHHHHHHHHHHHHHHH
Q 038630 677 GKTTLLHFVVQEIIRAEGAGTKSTEVNVESKNSMREDEFKKQGLEVVSGLSRDLSNVKKAAGMDSDVLSSYVMKLEMGLE 756 (885)
Q Consensus 677 ~k~TLLhyLvq~Iir~e~~~L~~~n~~~~~~~~~~~E~~~k~gl~~V~~l~~EL~~V~kAAkvdld~L~~dv~kLe~gl~ 756 (885)
+++++||+++.++++.++.... ..++.++++|++.|.+|.+||.+|++|+++|++++.+++.+|.++++
T Consensus 630 ~~~~~l~~~~~e~~~~~~~r~~-----------~~~~~~~~~~~~~~~~~~~~l~~v~~aa~i~~~~l~~~~~~l~~~~~ 698 (833)
T KOG1922|consen 630 GKTTLLHFVVPEVVRSEGKRSV-----------IDVEKSRRLGLPSLLKFLSDLSNVESAAKIDLEVLAEECSDLKKGLE 698 (833)
T ss_pred ccchhhhhhHHHHHHhhccccc-----------hhhhhhhhccchhhhcccchhcccchhhccCHHHHHHHHHHHHHHHH
Confidence 9999999999999988764321 13568899999999999999999999999999999999999999999
Q ss_pred HHHHHHH-hcCCC---CchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccCChhhhHHHHHHHHH
Q 038630 757 KVRLVLQ-YEKPD---MQGKFFHSMKMFLKEAEEEIARIKADERMALSLVKEVTEYFHGNAAKEEAHPFRIFMIVRDFLA 832 (885)
Q Consensus 757 kv~~~Lq-~~~~~---~~d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~~YFGEd~~k~e~~P~efF~il~dFl~ 832 (885)
++++.++ ..+.+ ..+.|.++|..|++.|+.++..|..+++.+...++.+++|||+++. .+.++.++|.++++|+.
T Consensus 699 ~~~~~l~~~~~~~~~~~~~~f~~~~~~fl~~ae~ev~~l~~~~~~~~~~~~~~~~yf~~~~~-~~~~~~~~f~~~r~fl~ 777 (833)
T KOG1922|consen 699 KVKRELPTASKNESLPPGDPFSKVKKEFLSSAEKEVKLLISEEREVRESVKKTAKYFGEDPK-EEITPEQVFSILRDFLR 777 (833)
T ss_pred HHHHHhhhhhcCCCCCccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc-ccCCHHHHHHHHHHHHH
Confidence 9999996 55433 3579999999999999999999999999999999999999999987 67899999999999999
Q ss_pred HHHHHHHHHHHHhhhhhccCCcccccCCCCccccccccccccCCCCCc
Q 038630 833 ILDHVCKEVGKMQERTMVGSARSFRISATASLPVLNRYNVRQDTSSDE 880 (885)
Q Consensus 833 ~ldka~kE~~k~~er~~v~~~r~f~~~~~~~~~~~~~~~~~~~~~~~~ 880 (885)
.++++|+|+++++|+..+.+....+...-..++.++...+.+....++
T Consensus 778 ~~~~~~~e~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 825 (833)
T KOG1922|consen 778 TFDKAHEENKKAEEKEKTYEAEEKRANKEAELEELKNISQAVSKRTSD 825 (833)
T ss_pred HHHHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccc
Confidence 999999999999999877666655666666667777766665444333
No 5
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=100.00 E-value=6e-49 Score=430.93 Aligned_cols=390 Identities=24% Similarity=0.320 Sum_probs=330.2
Q ss_pred CCCCCCCccccccccccccccc--------cCCceecccccccccCCHHHHHHhhccCCCCCCCCCCCCcCCCCCCcccc
Q 038630 439 DGTDGAKPKLKALHWDKVRATS--------DRATVWDQLKSSSFQLNEDMMESLFGCNSVNSVPKEPTTRKSVLPPVELE 510 (885)
Q Consensus 439 ~~~~~pK~KlK~LhW~kV~~~~--------~k~TIW~~l~~~~~~lD~d~LE~LF~~k~~~~~~K~~~~kk~v~~~~~k~ 510 (885)
+.....+++.-+|||..+...+ -++|+|+.++... +|...||.||..+..+..+.+ | +...+.+.
T Consensus 275 ~~~~~~~r~~~KL~Wr~~~~~~~~Gv~~~r~~~t~W~s~D~~~--~D~~r~~~LFEsr~~~~~P~K----K-~~E~r~~~ 347 (817)
T KOG1925|consen 275 SSALPTKRKTVKLFWRDVKLAGGHGVSASRPCATLWASLDPVS--VDTARLEHLFESRAKEVLPSK----K-AGEGRRTM 347 (817)
T ss_pred cccccccCceeEEEeecceecCCCCCccccccchhhhccCcce--ecHHHHHHHHHHhhhhhccch----h-hcccceee
Confidence 3445667788899999886542 5789999999776 899999999998765543211 1 12234467
Q ss_pred ccccChhhHHHHHHHhhhcCCCHHHHHHHHHcCCCCCCCHHHHHHHHhcCCCHHHHHHHHhhhc-Cc-CCCChHHHHHHH
Q 038630 511 NRVLDPKKSQNIAILLRALNVTRDEVSEALLDGNPESLGAELLETLVKMAPTKEEEIKLREYKG-DI-LKLGSAERFLKA 588 (885)
Q Consensus 511 isVLD~KRaqNIsI~L~klkls~eeI~~AIl~~D~~~L~~E~Le~Llk~lPT~EEi~~Lk~~~g-D~-~~L~~aEqFl~~ 588 (885)
.+|||.||.|.|.|.|.+|. +..-|..||+++|+-.++.|.||.|++|+||+||+++|+...- ++ ..||.||||++.
T Consensus 348 ~tVL~~KRt~AINIGLT~LP-Pv~VI~AA~~~FD~~~~~KDGIEK~L~MmPt~eE~qkIe~aqlaNPEipLG~AEQfLLt 426 (817)
T KOG1925|consen 348 TTVLDPKRTNAINIGLTTLP-PVHVIKAALLNFDEFAVSKDGIEKLLTMMPTEEERQKIEGAQLANPEIPLGPAEQFLLT 426 (817)
T ss_pred eeecCcccccceeeccccCC-chhhhHHHHhcchhhhcchhhHHHHHHhCCCHHHHHHHHHHHhcCCCCCCCcHHHHHHH
Confidence 89999999999999999996 5778999999999999999999999999999999999987653 33 899999999999
Q ss_pred HhCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhhccccccCCCCCceeeeeccchhc
Q 038630 589 VLDIPFAFKRVEAMLYRANFDAEVKYLRKSYQTLEAASEELKNSRLFLKLLEAVLKTGNRMNVGTNRGDAKAFKLDTLLK 668 (885)
Q Consensus 589 L~~IP~l~~RL~allfk~~F~~~v~~l~~~l~~l~~A~~eLr~S~~L~~lL~~VLaiGN~LN~gt~rG~A~GFkLdSL~K 668 (885)
|..|+.+.+||++|.|+..|+..-.+|.+.|-.++.|+++|.+++.|+-+|.++|+||||||+. +++||.|+.|.|
T Consensus 427 LSsI~~L~aRL~LWaFklDY~~~EKeiAEPL~Dlk~gm~qlE~n~Tf~~il~tLLAIGNfLnGT----~~KgFeLsYLeK 502 (817)
T KOG1925|consen 427 LSSIGGLAARLQLWAFKLDYDSMEKEIAEPLFDLKVGMEQLEQNATFRCILATLLAIGNFLNGT----QSKGFELSYLEK 502 (817)
T ss_pred HhhhHHHHHHHHHHhhhcccchhhHHhhhHHHHHHHHHHHHHhcchHHHHHHHHHHHhccccCc----cccceehHhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999965 799999999999
Q ss_pred ccccccCCCCccHHHHHHHHHHHHhCCCCCCccccccccCccchHHHHhhchhhhcccccchhhhhhhcCCCHHHHHHHH
Q 038630 669 LVDIKGTDGKTTLLHFVVQEIIRAEGAGTKSTEVNVESKNSMREDEFKKQGLEVVSGLSRDLSNVKKAAGMDSDVLSSYV 748 (885)
Q Consensus 669 L~dtKs~D~k~TLLhyLvq~Iir~e~~~L~~~n~~~~~~~~~~~E~~~k~gl~~V~~l~~EL~~V~kAAkvdld~L~~dv 748 (885)
..++|++..|.||||+||..++++.+ .-++|++|+..|.+.|+||+++|.+++
T Consensus 503 vsEVKDtV~KqsLlhHlc~~vVE~Fp---------------------------essDLYSEiGA~tRSAkVDf~qL~DNL 555 (817)
T KOG1925|consen 503 VSEVKDTVRKQSLLHHLCSLVVETFP---------------------------ESSDLYSEIGALTRSAKVDFEQLTDNL 555 (817)
T ss_pred chhhcchHHHHHHHHHHHHHHHHhCC---------------------------cchhHHHHhHhhhhhhhccHHHHHHHH
Confidence 99999999999999999988876432 245689999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCC-CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcc-ccCChhhhHHH
Q 038630 749 MKLEMGLEKVRLVLQYEKP-DMQGKFFHSMKMFLKEAEEEIARIKADERMALSLVKEVTEYFHGNAAK-EEAHPFRIFMI 826 (885)
Q Consensus 749 ~kLe~gl~kv~~~Lq~~~~-~~~d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~~YFGEd~~k-~e~~P~efF~i 826 (885)
.+||+.|+.-.+-|....+ +-.......|..|+++|.++|..|+.-++.+.+.|...+.|||-.+.. .+.++..||.+
T Consensus 556 ~qlErrCKaSWe~L~~Iakhe~~p~l~~r~~~fl~~cA~RI~~LKivhrr~~NRfHSFLLy~Gy~p~aIrev~iN~fc~~ 635 (817)
T KOG1925|consen 556 GQLERRCKASWESLRSIAKHELAPALRARLTHFLDQCARRIAMLKIVHRRVCNRFHSFLLYLGYTPQAIREVRINQFCHT 635 (817)
T ss_pred HHHHHHhhHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhhcCHHHHHHH
Confidence 9999999998888876653 334678899999999999999999999999999999999999976543 35688999999
Q ss_pred HHHHHHHHHHHHHHHHHH-------hhh-----hhccCCcccc----cCCCCccccc
Q 038630 827 VRDFLAILDHVCKEVGKM-------QER-----TMVGSARSFR----ISATASLPVL 867 (885)
Q Consensus 827 l~dFl~~ldka~kE~~k~-------~er-----~~v~~~r~f~----~~~~~~~~~~ 867 (885)
+.+|.-.|......+-++ .|| +|+....+|. -|++|+.++.
T Consensus 636 ~~EFaLEYRTTRervLQQ~qk~A~~RERNKTRGKmit~~Gkfs~~G~~pA~Ps~p~~ 692 (817)
T KOG1925|consen 636 LREFALEYRTTRERVLQQQQKQATYRERNKTRGKMITETGKFSGVGEAPANPSVPVA 692 (817)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHhhcccccceeeecccccCCCCCCCCcccccc
Confidence 999999996555433332 223 4666666774 5556654443
No 6
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=100.00 E-value=3.6e-48 Score=443.87 Aligned_cols=366 Identities=25% Similarity=0.368 Sum_probs=323.3
Q ss_pred CCCCCccccccccccccccccCCceecccccccc--cCCHHHHHHhhccCCCCC-CCCCCCCcCCCCCCccccccccChh
Q 038630 441 TDGAKPKLKALHWDKVRATSDRATVWDQLKSSSF--QLNEDMMESLFGCNSVNS-VPKEPTTRKSVLPPVELENRVLDPK 517 (885)
Q Consensus 441 ~~~pK~KlK~LhW~kV~~~~~k~TIW~~l~~~~~--~lD~d~LE~LF~~k~~~~-~~K~~~~kk~v~~~~~k~isVLD~K 517 (885)
-...|.++-.++|..+...++++|+|+++.+..| ++|++++|+.|.....+. .--+...+.....+..++.+++|.+
T Consensus 364 ~~~tk~~~p~lnW~alKP~qv~~tvf~~~~De~Il~~lD~~~~ee~Fk~~~s~~~~~~e~~a~~~~~~ka~qk~tLle~~ 443 (830)
T KOG1923|consen 364 PTPTKTKSPSLNWLALKPIQVKGTVFHELNDEKILEALDFSRFEEQFKILKSNGQILDESSAVSKAMTKAPQKRTLLEQR 443 (830)
T ss_pred CCcccccCCCccccccCccccccchhhhhhHHHHHHhhhHHHHHHHHHhhhcccchhhhHHHHHHHhhhhhhhhhHHHHH
Confidence 3466778899999999999999999999988776 689999999998733222 1111111111112335688999999
Q ss_pred hHHHHHHHhhhcCCCHHHHHHHHHcCCCCCCCHHHHHHHHhcCCCHHHHHHHHhhhcC---cCCCChHHHHHHHHhCccc
Q 038630 518 KSQNIAILLRALNVTRDEVSEALLDGNPESLGAELLETLVKMAPTKEEEIKLREYKGD---ILKLGSAERFLKAVLDIPF 594 (885)
Q Consensus 518 RaqNIsI~L~klkls~eeI~~AIl~~D~~~L~~E~Le~Llk~lPT~EEi~~Lk~~~gD---~~~L~~aEqFl~~L~~IP~ 594 (885)
|.+|++|.++ +.+..++|+.||..+|...|..|.+++|.+++||++|...+++|..+ ...|.+.++|++.+..|.+
T Consensus 444 R~~nlaiT~R-~~~~~~~V~~Aih~~dLk~L~~~~ve~L~r~lPTe~E~kl~~~~~~e~~pme~Ls~edkFml~lskIEr 522 (830)
T KOG1923|consen 444 RLFNLAITRR-VQMKAKEVMAAIHPLDLKALSLEPVELLQRILPTEAEVKLLREYERERSPMENLSEEDKFMLSLSKIER 522 (830)
T ss_pred HHHHHHHHhh-hcCchHHHHHHhhhccccccCCcHHHHHHhcCCchHHHHHHHHhhhhcCchhhcccchhhhhhhhhhhh
Confidence 9999999999 99999999999999999999999999999999999999999999754 3889999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhhccccccCCCCCceeeeeccchhccccccc
Q 038630 595 AFKRVEAMLYRANFDAEVKYLRKSYQTLEAASEELKNSRLFLKLLEAVLKTGNRMNVGTNRGDAKAFKLDTLLKLVDIKG 674 (885)
Q Consensus 595 l~~RL~allfk~~F~~~v~~l~~~l~~l~~A~~eLr~S~~L~~lL~~VLaiGN~LN~gt~rG~A~GFkLdSL~KL~dtKs 674 (885)
+.+||..|.|+.+|.+.+..+.+++..++.|...+++|++|+.+|++||++|||||.+ .||.++||+|.+|.-|.++|+
T Consensus 523 le~klatM~~m~nF~dsv~ll~pq~~si~aAS~s~k~sr~lr~VleiILA~gNymns~-kRg~ayGFklqslD~ll~tkS 601 (830)
T KOG1923|consen 523 LEEKLATMEFMGNFPDSVQLLAPQLISIIAASKSLKESRKLRPVLEIILAFGNYMNSS-KRGAAYGFKLQSLDSLLDTKS 601 (830)
T ss_pred hHHHHHHHHHHHhchhhhhhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHhhccCCCc-ccccccceeccccHHHhhccC
Confidence 9999999999999999999999999999999999999999999999999999999988 579999999999999999999
Q ss_pred CCCCccHHHHHHHHHHHHhCCCCCCccccccccCccchHHHHhhchhhhcccccchhhhhhhcCCCHHHHHHHHHHHHHH
Q 038630 675 TDGKTTLLHFVVQEIIRAEGAGTKSTEVNVESKNSMREDEFKKQGLEVVSGLSRDLSNVKKAAGMDSDVLSSYVMKLEMG 754 (885)
Q Consensus 675 ~D~k~TLLhyLvq~Iir~e~~~L~~~n~~~~~~~~~~~E~~~k~gl~~V~~l~~EL~~V~kAAkvdld~L~~dv~kLe~g 754 (885)
+|.++|||||++-.|.++ |+.+.+|.+||.-|++|+.++++.+..||.+|.+|
T Consensus 602 tDr~~tLlh~iv~~i~ek---------------------------lp~l~~F~~el~~~eKa~av~lesV~~Dv~eL~~g 654 (830)
T KOG1923|consen 602 TDRSMTLLHYIVLTIAEK---------------------------LPALQLFFSELDFVEKATAVQLESVLADVKELNAG 654 (830)
T ss_pred CccceeeeehhhHHHHHh---------------------------hHHHHhhHHHhhccchhhhhhhhccchhHHHHHhH
Confidence 999999999999766432 34567899999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccCChhhhHHHHHHHHHHH
Q 038630 755 LEKVRLVLQYEKPDMQGKFFHSMKMFLKEAEEEIARIKADERMALSLVKEVTEYFHGNAAKEEAHPFRIFMIVRDFLAIL 834 (885)
Q Consensus 755 l~kv~~~Lq~~~~~~~d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~~YFGEd~~k~e~~P~efF~il~dFl~~l 834 (885)
+..++++..... .+ ..|+.|+++.+.++++|+++.+.+...|+.+++||||.++. ..|..||..+..|...|
T Consensus 655 ~~l~~kE~e~~~---~~---~iL~~F~~n~~~kmkkl~~~~k~A~~af~~~~~y~Gespk~--tppt~ff~~f~~F~~~~ 726 (830)
T KOG1923|consen 655 MTLAEKETEREG---LD---VILSEFLDNNKPKMKKLRKDFKDAAEAFEDVVEYFGESPKT--TPPTVFFQLFVRFVRAY 726 (830)
T ss_pred HHHHHHHHhhhc---cc---hHHHHHHhcccHHHHHHHHHHHHHHHHHHhHhHhhCCCCCC--CCCCccHHHHHHHHHHH
Confidence 999988776642 12 79999999999999999999999999999999999999865 46788999999999999
Q ss_pred HHHHHHHHH
Q 038630 835 DHVCKEVGK 843 (885)
Q Consensus 835 dka~kE~~k 843 (885)
..+..|++.
T Consensus 727 k~~~~ene~ 735 (830)
T KOG1923|consen 727 KMARQENEQ 735 (830)
T ss_pred Hhhhhhhhh
Confidence 999876665
No 7
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=98.07 E-value=0.00048 Score=82.15 Aligned_cols=29 Identities=14% Similarity=0.172 Sum_probs=21.0
Q ss_pred CCCCcccccccccccccccc-CCceecccc
Q 038630 442 DGAKPKLKALHWDKVRATSD-RATVWDQLK 470 (885)
Q Consensus 442 ~~pK~KlK~LhW~kV~~~~~-k~TIW~~l~ 470 (885)
+.|..-...-+|.+++..+. .+-+|+++.
T Consensus 634 I~p~d~s~~cFWvkv~Edk~en~dlfakL~ 663 (1102)
T KOG1924|consen 634 IVPRDLSENCFWVKVNEDKLENDDLFAKLA 663 (1102)
T ss_pred cCccccCccceeeecchhhccchHHHHHHH
Confidence 67777778899999998873 345666653
No 8
>smart00498 FH2 Formin Homology 2 Domain. FH proteins control rearrangements of the actin cytoskeleton, especially in the context of cytokinesis and cell polarisation. Members of this family have been found to interact with Rho-GTPases, profilin and other actin-assoziated proteins. These interactions are mediated by the proline-rich FH1 domain, usually located in front of FH2 (but not listed in SMART). Despite this cytosolic function, vertebrate formins have been assigned functions within the nucleus. A set of Formin-Binding Proteins (FBPs) has been shown to bind FH1 with their WW domain.
Probab=97.86 E-value=7e-05 Score=86.68 Aligned_cols=109 Identities=33% Similarity=0.406 Sum_probs=90.8
Q ss_pred hhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCC-Cc----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038630 734 KKAAGMDSDVLSSYVMKLEMGLEKVRLVLQYEKPD-MQ----GKFFHSMKMFLKEAEEEIARIKADERMALSLVKEVTEY 808 (885)
Q Consensus 734 ~kAAkvdld~L~~dv~kLe~gl~kv~~~Lq~~~~~-~~----d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~~Y 808 (885)
..++..+++.|...+.+++..+.++.+.+...... .. ..|.+-|..|.+.+++.+..++++.++....++++++|
T Consensus 319 ~~~a~~~~~~l~~~~~~~~~~~~~~~~yfge~~~~~~~~efF~~f~~F~~~f~ka~~en~~~~~~e~~~~~~~~~~~~~~ 398 (432)
T smart00498 319 LKAAKEKYDKLQKDLSDLKTRFEKLVEYYGEDPKDTSPEEFFKDFNEFLKEFSKAAEENIKKEEEEEERRKQLVKETTEY 398 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 78888999999999999999999988877655432 21 35666677777778888888888888899999999999
Q ss_pred ccCCCccccCChhhhHHHHHHHHHHHHHHHHHHH
Q 038630 809 FHGNAAKEEAHPFRIFMIVRDFLAILDHVCKEVG 842 (885)
Q Consensus 809 FGEd~~k~e~~P~efF~il~dFl~~ldka~kE~~ 842 (885)
|++...+.+.++..+|.+++||+..+|++|++++
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~d~~~~~d~~~~~~~ 432 (432)
T smart00498 399 EQSSSRQKERNPSMDFEVERDFLGVLDSLLEELG 432 (432)
T ss_pred hhhhhhhhhccchhhhhhhhhhhhhHHHHHHhhC
Confidence 9987766567899999999999999999999863
No 9
>PHA03247 large tegument protein UL36; Provisional
Probab=94.85 E-value=8.8 Score=52.96 Aligned_cols=15 Identities=20% Similarity=0.149 Sum_probs=10.2
Q ss_pred cccccccCCCCCCCC
Q 038630 33 QRRILHQPLFPASSP 47 (885)
Q Consensus 33 ~rr~lhqp~fp~~s~ 47 (885)
.++-+-.|.-+..+.
T Consensus 2684 ~~~a~~~pV~s~t~l 2698 (3151)
T PHA03247 2684 RRRAARPTVGSLTSL 2698 (3151)
T ss_pred CCCCCCCCCCCCCCC
Confidence 467777777666664
No 10
>PHA03247 large tegument protein UL36; Provisional
Probab=94.48 E-value=32 Score=48.08 Aligned_cols=8 Identities=25% Similarity=0.671 Sum_probs=3.8
Q ss_pred cCCceecc
Q 038630 461 DRATVWDQ 468 (885)
Q Consensus 461 ~k~TIW~~ 468 (885)
.+.|.|-.
T Consensus 3024 l~q~~~~~ 3031 (3151)
T PHA03247 3024 LKQTLWPP 3031 (3151)
T ss_pred cccCCCCC
Confidence 34555543
No 11
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=93.25 E-value=0.92 Score=53.06 Aligned_cols=29 Identities=14% Similarity=0.195 Sum_probs=17.1
Q ss_pred CCCCccccccccccccccccCCceecccc
Q 038630 442 DGAKPKLKALHWDKVRATSDRATVWDQLK 470 (885)
Q Consensus 442 ~~pK~KlK~LhW~kV~~~~~k~TIW~~l~ 470 (885)
..+-..+|.+.-..+.....++-+-++|.
T Consensus 475 i~~G~ql~~ve~t~~~~~dgR~~LmaqIR 503 (569)
T KOG3671|consen 475 IAPGGQLKKVETTALSSGDGRDALMAQIR 503 (569)
T ss_pred cCccccccceeeccCcCcccHHHHHHHHH
Confidence 44555566666666555555666666665
No 12
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=86.40 E-value=0.14 Score=40.60 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=14.0
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHhh
Q 038630 115 AKKVAIAISVGIVTLGMLSALAFFLY 140 (885)
Q Consensus 115 ~~k~~iai~~~~~~~~~~~~~~~f~~ 140 (885)
++.++||+++++=.++++.++++|||
T Consensus 8 ~~~vaIa~~VvVPV~vI~~vl~~~l~ 33 (40)
T PF08693_consen 8 SNTVAIAVGVVVPVGVIIIVLGAFLF 33 (40)
T ss_pred CceEEEEEEEEechHHHHHHHHHHhh
Confidence 45566666555544444445555555
No 13
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=86.13 E-value=41 Score=36.18 Aligned_cols=52 Identities=19% Similarity=0.222 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhhccC
Q 038630 783 EAEEEIARIKADERMALSLVKEVTEYFHGNAAKEEAHPFRIFMIVRDFLAILDHVCKEVGKMQERTMVGS 852 (885)
Q Consensus 783 ~Ae~ei~~L~~~~~~a~~~~kel~~YFGEd~~k~e~~P~efF~il~dFl~~ldka~kE~~k~~er~~v~~ 852 (885)
..++++++.+.+++.+.+.+..+..++ .++.+.||+..+|+.+++++-.+++
T Consensus 162 kL~~el~~~~~~Le~~~~~~~al~Kq~------------------e~~~~EydrLlee~~~Lq~~i~~~~ 213 (216)
T KOG1962|consen 162 KLETELEKKQKKLEKAQKKVDALKKQS------------------EGLQDEYDRLLEEYSKLQEQIESGG 213 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHcccHHHHHHHHHHHHHHHHhccC
Confidence 344444444445555555555555544 3345577788888888888755543
No 14
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=85.01 E-value=31 Score=44.65 Aligned_cols=16 Identities=6% Similarity=0.059 Sum_probs=11.4
Q ss_pred HHHHHHhhccccccCC
Q 038630 638 LLEAVLKTGNRMNVGT 653 (885)
Q Consensus 638 lL~~VLaiGN~LN~gt 653 (885)
+=.+|-.|+|||+..+
T Consensus 1473 l~~Li~~v~~Flt~~~ 1488 (1758)
T KOG0994|consen 1473 LRNLIQQVRDFLTQPD 1488 (1758)
T ss_pred HHHHHHHHHHHhcCCC
Confidence 3346778899998654
No 15
>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]
Probab=80.92 E-value=1.7e+02 Score=37.24 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=18.2
Q ss_pred HHHHHhcHHHHHHHHHHHhhcccccc
Q 038630 626 SEELKNSRLFLKLLEAVLKTGNRMNV 651 (885)
Q Consensus 626 ~~eLr~S~~L~~lL~~VLaiGN~LN~ 651 (885)
....+....+..+.+++...|++++.
T Consensus 627 s~~~~~~~l~~~~~e~~~~~~~r~~~ 652 (833)
T KOG1922|consen 627 SSDGKTTLLHFVVPEVVRSEGKRSVI 652 (833)
T ss_pred cccccchhhhhhHHHHHHhhccccch
Confidence 33334455677788889999998874
No 16
>PF06809 NPDC1: Neural proliferation differentiation control-1 protein (NPDC1); InterPro: IPR009635 This family consists of several neural proliferation differentiation control-1 (NPDC1) proteins. NPDC1 plays a role in the control of neural cell proliferation and differentiation. It has been suggested that NPDC1 may be involved in the development of several secretion glands. This family also contains the C-terminal region of the Caenorhabditis elegans protein CAB-1 (Q93249 from SWISSPROT) which is known to interact with AEX-3 [].; GO: 0016021 integral to membrane
Probab=75.69 E-value=7.2 Score=43.72 Aligned_cols=11 Identities=55% Similarity=0.785 Sum_probs=5.1
Q ss_pred CCCccccCccc
Q 038630 235 SSDEESHDTAF 245 (885)
Q Consensus 235 ~~~~~~~~~~f 245 (885)
++|||+||-+|
T Consensus 291 ~sdeeneeGDf 301 (341)
T PF06809_consen 291 SSDEENEEGDF 301 (341)
T ss_pred cccccccCCCe
Confidence 44554444444
No 17
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=74.99 E-value=1.9 Score=48.07 Aligned_cols=28 Identities=25% Similarity=0.511 Sum_probs=18.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhccC
Q 038630 118 VAIAISVGIVTLGMLSALAFFLYRHRVK 145 (885)
Q Consensus 118 ~~iai~~~~~~~~~~~~~~~f~~~~r~~ 145 (885)
+.|||.+.||+|++|.++||++.|||.+
T Consensus 273 vPIaVG~~La~lvlivLiaYli~Rrr~~ 300 (306)
T PF01299_consen 273 VPIAVGAALAGLVLIVLIAYLIGRRRSR 300 (306)
T ss_pred HHHHHHHHHHHHHHHHHHhheeEecccc
Confidence 7777777777777776666655444443
No 18
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=72.70 E-value=4.1 Score=39.95 Aligned_cols=28 Identities=21% Similarity=0.307 Sum_probs=11.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhccCC
Q 038630 118 VAIAISVGIVTLGMLSALAFFLYRHRVKH 146 (885)
Q Consensus 118 ~~iai~~~~~~~~~~~~~~~f~~~~r~~~ 146 (885)
+.|.+.|++..++++ ++++|++|||+++
T Consensus 67 ~~Ii~gv~aGvIg~I-lli~y~irR~~Kk 94 (122)
T PF01102_consen 67 IGIIFGVMAGVIGII-LLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHS--
T ss_pred eehhHHHHHHHHHHH-HHHHHHHHHHhcc
Confidence 444334444434444 3344444444444
No 19
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=72.08 E-value=58 Score=33.26 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 038630 609 DAEVKYLRKSYQTLEAASEEL 629 (885)
Q Consensus 609 ~~~v~~l~~~l~~l~~A~~eL 629 (885)
+.+++++...+..+...+..|
T Consensus 25 D~~f~~~~~~~~~~~~~~~~l 45 (229)
T PF03114_consen 25 DEEFEELEEKFKQLEESIKKL 45 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 444444444454444444444
No 20
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=71.35 E-value=43 Score=32.85 Aligned_cols=50 Identities=8% Similarity=0.116 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccCChhhhHHHHHHHHHHHH
Q 038630 782 KEAEEEIARIKADERMALSLVKEVTEYFHGNAAKEEAHPFRIFMIVRDFLAILD 835 (885)
Q Consensus 782 ~~Ae~ei~~L~~~~~~a~~~~kel~~YFGEd~~k~e~~P~efF~il~dFl~~ld 835 (885)
.....++..|+..+.++...|..+++.|||..-. -++.=..|.|.-.+|+
T Consensus 64 ~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~----veEL~~Dv~DlK~myr 113 (120)
T PF12325_consen 64 RALKKEVEELEQELEELQQRYQTLLELLGEKSEE----VEELRADVQDLKEMYR 113 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH----HHHHHHHHHHHHHHHH
Confidence 4455678889999999999999999999985322 2344444444444443
No 21
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=70.95 E-value=83 Score=41.09 Aligned_cols=28 Identities=18% Similarity=0.192 Sum_probs=14.6
Q ss_pred CHHHHHHHHhhhcC-cCCCChHHHHHHHH
Q 038630 562 TKEEEIKLREYKGD-ILKLGSAERFLKAV 589 (885)
Q Consensus 562 T~EEi~~Lk~~~gD-~~~L~~aEqFl~~L 589 (885)
++|+|+.|.+-... ...|..+|..|..-
T Consensus 1509 tpeqi~~L~~~I~e~v~sL~nVd~IL~~T 1537 (1758)
T KOG0994|consen 1509 TPEQIQQLTGEIQERVASLPNVDAILSRT 1537 (1758)
T ss_pred CHHHHHHHHHHHHHHHHhcccHHHHHHhh
Confidence 44555544433322 26677777766553
No 22
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=70.72 E-value=1.4 Score=51.83 Aligned_cols=12 Identities=42% Similarity=0.631 Sum_probs=0.0
Q ss_pred CCccccCccccc
Q 038630 236 SDEESHDTAFYT 247 (885)
Q Consensus 236 ~~~~~~~~~fys 247 (885)
+|+|++||+|.+
T Consensus 410 ~D~~~~dee~~~ 421 (439)
T PF02480_consen 410 SDSDSEDEEFDS 421 (439)
T ss_dssp ------------
T ss_pred ccCcccccchhh
Confidence 444445555544
No 23
>PF08336 P4Ha_N: Prolyl 4-Hydroxylase alpha-subunit, N-terminal region; InterPro: IPR013547 The members found in this entry are eukaryotic proteins, and include all three isoforms of the prolyl 4-hydroxylase alpha subunit. This enzyme (1.14.11.2 from EC) is important in the post-translational modification of collagen, as it catalyses the formation of 4-hydroxyproline. In vertebrates, the complete enzyme is an alpha2-beta2 tetramer; the beta-subunit is identical to protein disulphide isomerase [, , , ]. The function of the N-terminal region featured in this family does not seem to be known. ; GO: 0004656 procollagen-proline 4-dioxygenase activity, 0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, 0055114 oxidation-reduction process, 0005783 endoplasmic reticulum
Probab=70.22 E-value=37 Score=33.31 Aligned_cols=70 Identities=10% Similarity=0.164 Sum_probs=51.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccCChhhhHHHHHHHHHHHHHHHHHHHHH
Q 038630 771 GKFFHSMKMFLKEAEEEIARIKADERMALSLVKEVTEYFHGNAAKEEAHPFRIFMIVRDFLAILDHVCKEVGKM 844 (885)
Q Consensus 771 d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~~YFGEd~~k~e~~P~efF~il~dFl~~ldka~kE~~k~ 844 (885)
..+...+..|++.-+.+++.|+.....+.....+... |+..--.+|..-|..++.|...+.+..+-+++.
T Consensus 14 ~~l~~~L~~Yi~~~~~kl~~l~~~~~~~~~~~~~~~~----d~e~yl~nPlnaF~LIrRl~~dW~~~~~~~~~~ 83 (134)
T PF08336_consen 14 EELISNLRNYIEELQEKLDTLKRFLDEMKREHEKAKS----DPEEYLSNPLNAFSLIRRLHQDWPKWEKLMEQP 83 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----chhhhhhcHHHHHHHHHHHHHhhhhHHHHHHHh
Confidence 4677888899999999998888877777665554432 222212478889999999999998887766654
No 24
>PHA03281 envelope glycoprotein E; Provisional
Probab=70.01 E-value=17 Score=43.59 Aligned_cols=18 Identities=17% Similarity=0.246 Sum_probs=10.5
Q ss_pred CCCCccccCcccccCCCC
Q 038630 234 SSSDEESHDTAFYTPQCS 251 (885)
Q Consensus 234 ~~~~~~~~~~~fysp~~s 251 (885)
++++|.+.||||=.--|-
T Consensus 609 ed~~~~~~~~~~~~~~~~ 626 (642)
T PHA03281 609 EDDEETDTDEEFGNAIGA 626 (642)
T ss_pred ccccccchhhhhcccccc
Confidence 444555567888555443
No 25
>PHA03246 large tegument protein UL36; Provisional
Probab=69.04 E-value=5.2e+02 Score=37.04 Aligned_cols=77 Identities=13% Similarity=0.209 Sum_probs=53.6
Q ss_pred hhhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcC-----C--CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038630 730 LSNVKKAAGMDSDVLSSYVMKLEMGLEKVRLVLQYEK-----P--DMQGKFFHSMKMFLKEAEEEIARIKADERMALSLV 802 (885)
Q Consensus 730 L~~V~kAAkvdld~L~~dv~kLe~gl~kv~~~Lq~~~-----~--~~~d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~ 802 (885)
|..|+++..+|.+.++ =| +..+..++... + +.-..|.+.+... .....+++.|+..++.++..|
T Consensus 1730 L~~vEet~ELDvqAVe----WL----~hAr~IIDSHpLT~rIDg~GPm~~yaeRIDaL-~~LR~rLd~Lr~~L~~AEaaW 1800 (3095)
T PHA03246 1730 LTKVEETKELDTQTVE----WL----KHAESVIDSHDLTVRIDESGPMTIYAERIDAL-VRLENRLAELKSELALAEVAW 1800 (3095)
T ss_pred HHHhhhccccCHHHHH----HH----HHHHHHhccCccccccCCCCCcHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhH
Confidence 7788998888876533 12 22334444443 2 2235777777764 456688999999999999999
Q ss_pred HHHHHhccCCCcc
Q 038630 803 KEVTEYFHGNAAK 815 (885)
Q Consensus 803 kel~~YFGEd~~k 815 (885)
.+.+..|+-+-..
T Consensus 1801 DeaW~~F~r~~~~ 1813 (3095)
T PHA03246 1801 DDTWSTFIHDKDR 1813 (3095)
T ss_pred HHHHHHHhhccCC
Confidence 9999999966443
No 26
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=68.86 E-value=53 Score=28.16 Aligned_cols=66 Identities=6% Similarity=0.151 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccCChhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 038630 775 HSMKMFLKEAEEEIARIKADERMALSLVKEVTEYFHGNAAKEEAHPFRIFMIVRDFLAILDHVCKEVGKMQE 846 (885)
Q Consensus 775 e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~~YFGEd~~k~e~~P~efF~il~dFl~~ldka~kE~~k~~e 846 (885)
+.|..+..........|+..+..+...+..+...+.++.. ..|...+..|...+++.++.+..+.+
T Consensus 7 ~~l~~~a~~~~~~~~~l~~~~~~l~~~~~~l~~~W~G~a~------~af~~~~~~~~~~~~~~~~~L~~~~~ 72 (86)
T PF06013_consen 7 EQLRAAAQQLQAQADELQSQLQQLESSIDSLQASWQGEAA------DAFQDKFEEWNQAFRQLNEALEELSQ 72 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGBTSSTS------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555666666667777777777777776543 24666666666666666666665544
No 27
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=66.86 E-value=7.5 Score=41.60 Aligned_cols=29 Identities=24% Similarity=0.138 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 038630 783 EAEEEIARIKADERMALSLVKEVTEYFHG 811 (885)
Q Consensus 783 ~Ae~ei~~L~~~~~~a~~~~kel~~YFGE 811 (885)
.++++|...++.+.+..+.....+.=|-+
T Consensus 146 ~~eeElr~Ae~kfees~E~a~~~M~~i~~ 174 (215)
T cd07593 146 RLEEELRRAKAKYEESSEDVEARMVAIKE 174 (215)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46667777777777666666666655544
No 28
>PRK10132 hypothetical protein; Provisional
Probab=66.57 E-value=33 Score=33.05 Aligned_cols=73 Identities=14% Similarity=0.055 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc
Q 038630 742 DVLSSYVMKLEMGLEKVRLVLQYEKPDMQGKFFHSMKMFLKEAEEEIARIKADERMALSLVKEVTEYFHGNAA 814 (885)
Q Consensus 742 d~L~~dv~kLe~gl~kv~~~Lq~~~~~~~d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~~YFGEd~~ 814 (885)
+.|..||..|-..++.+-........+.-....+++...++.+...+...++....+......+-+|-+++|-
T Consensus 15 e~L~~Dl~~L~~~le~ll~~~~~~~~~~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~~a~~~~~~~V~~~Pw 87 (108)
T PRK10132 15 QDIQNDVNQLADSLESVLKSWGSDAKGEAEAARRKAQALLKETRARMHGRTRVQQAARDAVGCADTFVRERPW 87 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCcH
Confidence 4455555555555544322111111111246677788888888888887766555566667777788887653
No 29
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]
Probab=65.19 E-value=1.3e+02 Score=35.48 Aligned_cols=10 Identities=30% Similarity=0.378 Sum_probs=6.1
Q ss_pred HHHHHHhhhc
Q 038630 520 QNIAILLRAL 529 (885)
Q Consensus 520 qNIsI~L~kl 529 (885)
.+..|+++++
T Consensus 488 dvatiLsRRi 497 (518)
T KOG1830|consen 488 DVATILSRRI 497 (518)
T ss_pred hHHHHHHHHH
Confidence 4556766665
No 30
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=64.01 E-value=1.4e+02 Score=31.98 Aligned_cols=95 Identities=18% Similarity=0.121 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccCC
Q 038630 740 DSDVLSSYVMKLEMGLEKVRLVLQYEKPDMQGKFFHSMKMFLKEAEEEIARIKADERMALSLVKEVTEYFHGNAAKEEAH 819 (885)
Q Consensus 740 dld~L~~dv~kLe~gl~kv~~~Lq~~~~~~~d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~~YFGEd~~k~e~~ 819 (885)
.+..+.+++.+.+..+.+++. ....+++ +.+..=+.+++.++...+..++.+....+.=+..|..+ .
T Consensus 124 ~~q~a~~~l~kkr~~~~Kl~~------~~~~~K~-~~~~~ev~~~e~~~~~a~~~fe~is~~~k~El~rF~~e------r 190 (224)
T cd07623 124 NWQNAQQTLTKKREAKAKLEL------SGRTDKL-DQAQQEIKEWEAKVDRGQKEFEEISKTIKKEIERFEKN------R 190 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHh------cCChhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H
Confidence 344445555555554444421 0111222 34444455666677777777777776666666667532 1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 038630 820 PFRIFMIVRDFLAILDHVCKEVGKMQER 847 (885)
Q Consensus 820 P~efF~il~dFl~~ldka~kE~~k~~er 847 (885)
-.+|=..|..|+...-+..+++-+.+|.
T Consensus 191 v~dfk~~l~~~le~~i~~q~~~~~~We~ 218 (224)
T cd07623 191 VKDFKDIIIKYLESLLNTQQQLIKYWEA 218 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1355567777777777666666665553
No 31
>PRK10404 hypothetical protein; Provisional
Probab=63.86 E-value=41 Score=31.95 Aligned_cols=71 Identities=13% Similarity=0.083 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhccCCC
Q 038630 743 VLSSYVMKLEMGLEKVRLVLQYEKPDMQGKFFHSMKMFLKEAEEEIARIKADERM-ALSLVKEVTEYFHGNA 813 (885)
Q Consensus 743 ~L~~dv~kLe~gl~kv~~~Lq~~~~~~~d~F~e~m~~Fl~~Ae~ei~~L~~~~~~-a~~~~kel~~YFGEd~ 813 (885)
.|..||+.|-.+++.+-........+.-+...+++...++.+..++..+.+.... +......+-.|-+++|
T Consensus 9 ~l~~dl~~L~~dle~Ll~~~~~~a~e~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~k~aa~~td~yV~e~P 80 (101)
T PRK10404 9 RIDDDLTLLSETLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVHEKP 80 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCc
Confidence 3445555555555443221111111112466777777777887777776665433 4555566677887754
No 32
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=62.34 E-value=1.2e+02 Score=31.98 Aligned_cols=67 Identities=13% Similarity=0.078 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccCChhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 038630 775 HSMKMFLKEAEEEIARIKADERMALSLVKEVTEYFHGNAAKEEAHPFRIFMIVRDFLAILDHVCKEVGKMQER 847 (885)
Q Consensus 775 e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~~YFGEd~~k~e~~P~efF~il~dFl~~ldka~kE~~k~~er 847 (885)
+.+..=+++++.++..++..+..+.+..+.=++.|..+- -.+|=.+|.+|+...-..++++-+.+|.
T Consensus 166 ~~~~~ei~~~~~~~~~~~~~~~~is~~~k~E~~rf~~~k------~~d~k~~l~~~~~~~i~~~~~~~~~We~ 232 (236)
T PF09325_consen 166 EQAENEIEEAERRVEQAKDEFEEISENIKKELERFEKEK------VKDFKSMLEEYAESQIEYQKKMLEAWET 232 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344445666677777777777777666666666675432 1356677888887777777777766653
No 33
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=61.89 E-value=6.2 Score=38.59 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHhhhhccCCC
Q 038630 125 GIVTLGMLSALAFFLYRHRVKHP 147 (885)
Q Consensus 125 ~~~~~~~~~~~~~f~~~~r~~~~ 147 (885)
+|+++++|.+++|++.++||+++
T Consensus 7 iii~~i~l~~~~~~~~~rRR~r~ 29 (130)
T PF12273_consen 7 IIIVAILLFLFLFYCHNRRRRRR 29 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 33334444344444443443333
No 34
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=61.75 E-value=12 Score=29.65 Aligned_cols=20 Identities=30% Similarity=0.439 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 038630 121 AISVGIVTLGMLSALAFFLY 140 (885)
Q Consensus 121 ai~~~~~~~~~~~~~~~f~~ 140 (885)
||.++.++..++.++++|+|
T Consensus 7 aIIv~V~vg~~iiii~~~~Y 26 (38)
T PF02439_consen 7 AIIVAVVVGMAIIIICMFYY 26 (38)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 33333333333445555554
No 35
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=59.89 E-value=8.7 Score=41.02 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=19.3
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHh
Q 038630 115 AKKVAIAISVGIVTLGMLSALAFFL 139 (885)
Q Consensus 115 ~~k~~iai~~~~~~~~~~~~~~~f~ 139 (885)
--+++|||.||+++++++.++++++
T Consensus 36 ~~~I~iaiVAG~~tVILVI~i~v~v 60 (221)
T PF08374_consen 36 YVKIMIAIVAGIMTVILVIFIVVLV 60 (221)
T ss_pred ceeeeeeeecchhhhHHHHHHHHHH
Confidence 3568999999999988886666655
No 36
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=59.59 E-value=2.7 Score=39.43 Aligned_cols=26 Identities=19% Similarity=0.354 Sum_probs=11.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhc
Q 038630 118 VAIAISVGIVTLGMLSALAFFLYRHR 143 (885)
Q Consensus 118 ~~iai~~~~~~~~~~~~~~~f~~~~r 143 (885)
+.|+|.++++.+++++++.+|+++||
T Consensus 69 agi~vg~~~~v~~lv~~l~w~f~~r~ 94 (96)
T PTZ00382 69 AGISVAVVAVVGGLVGFLCWWFVCRG 94 (96)
T ss_pred EEEEeehhhHHHHHHHHHhheeEEee
Confidence 44444444444444444444444433
No 37
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=58.73 E-value=4e+02 Score=32.17 Aligned_cols=27 Identities=22% Similarity=0.409 Sum_probs=13.6
Q ss_pred ccchhcccccccCCCCccHHHHHHHHHHH
Q 038630 663 LDTLLKLVDIKGTDGKTTLLHFVVQEIIR 691 (885)
Q Consensus 663 LdSL~KL~dtKs~D~k~TLLhyLvq~Iir 691 (885)
+|+..||.+.|.. ..+|=|-|++.+++
T Consensus 372 ad~~~KI~~~k~r--~~~Ls~RiLRv~ik 398 (508)
T KOG3091|consen 372 ADAVAKIEEAKNR--HVELSHRILRVMIK 398 (508)
T ss_pred hhHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 3445556555542 23555655554443
No 38
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=58.64 E-value=39 Score=39.36 Aligned_cols=90 Identities=16% Similarity=0.148 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCh
Q 038630 744 LSSYVMKLEMGLEKVRLVLQYEKPDMQGKFFHSMKMFLKE---AEEEIARIKADERMALSLVKEVTEYFHGNAAKEEAHP 820 (885)
Q Consensus 744 L~~dv~kLe~gl~kv~~~Lq~~~~~~~d~F~e~m~~Fl~~---Ae~ei~~L~~~~~~a~~~~kel~~YFGEd~~k~e~~P 820 (885)
+..-+.+|+..+.+++..+...+ -.+.++|..+..+ -+++...|+..+...++.-+.+|....|..+..+++-
T Consensus 251 ~~~hi~~l~~EveRlrt~l~~Aq----k~~~ek~~qy~~Ee~~~reen~rlQrkL~~e~erRealcr~lsEsesslemde 326 (552)
T KOG2129|consen 251 EKLHIDKLQAEVERLRTYLSRAQ----KSYQEKLMQYRAEEVDHREENERLQRKLINELERREALCRMLSESESSLEMDE 326 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 33444555555555555554332 2445667666654 3455666777777767777778988888766666777
Q ss_pred hhhHHHHHHHHHHHHHH
Q 038630 821 FRIFMIVRDFLAILDHV 837 (885)
Q Consensus 821 ~efF~il~dFl~~ldka 837 (885)
++||.-+.+|-..+.-+
T Consensus 327 ery~Ne~~~~g~s~~Va 343 (552)
T KOG2129|consen 327 ERYLNEFVDFGDSVEVA 343 (552)
T ss_pred HHHHhhhhccCCceeee
Confidence 88888888887766443
No 39
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=58.14 E-value=4.8e+02 Score=32.91 Aligned_cols=16 Identities=19% Similarity=0.364 Sum_probs=9.9
Q ss_pred Cceeeeeccchhcccc
Q 038630 656 GDAKAFKLDTLLKLVD 671 (885)
Q Consensus 656 G~A~GFkLdSL~KL~d 671 (885)
.+..-|.|+.|.++.-
T Consensus 160 ~~lp~~~Le~Ive~~~ 175 (683)
T PF08580_consen 160 HGLPIFELETIVEEMP 175 (683)
T ss_pred cCCCcccHHHHHHhcc
Confidence 3456677777666653
No 40
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=57.54 E-value=42 Score=30.93 Aligned_cols=71 Identities=14% Similarity=0.128 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccCCC
Q 038630 743 VLSSYVMKLEMGLEKVRLVLQYEKPDMQGKFFHSMKMFLKEAEEEIARIKADER-MALSLVKEVTEYFHGNA 813 (885)
Q Consensus 743 ~L~~dv~kLe~gl~kv~~~Lq~~~~~~~d~F~e~m~~Fl~~Ae~ei~~L~~~~~-~a~~~~kel~~YFGEd~ 813 (885)
+|..++..|..+++.+...+.....+.-+...+.+...++.+.+.+..+..... .+.+....+-.|-.++|
T Consensus 2 ~l~~~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~V~e~P 73 (94)
T PF05957_consen 2 DLKAELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDAADQAREQAREAAEQTEDYVRENP 73 (94)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCh
Confidence 344555555555555443332211111234555666666666666655444332 33444455556655543
No 41
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=57.23 E-value=2.6e+02 Score=29.63 Aligned_cols=97 Identities=23% Similarity=0.134 Sum_probs=59.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccCC
Q 038630 740 DSDVLSSYVMKLEMGLEKVRLVLQYEKPDMQGKFFHSMKMFLKEAEEEIARIKADERMALSLVKEVTEYFHGNAAKEEAH 819 (885)
Q Consensus 740 dld~L~~dv~kLe~gl~kv~~~Lq~~~~~~~d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~~YFGEd~~k~e~~ 819 (885)
+++.+.+++.+++..+.++... .....++ ...+..=+..++.++...+..+..+.+..++=+..|..+ .
T Consensus 116 ~~~~~~~~L~k~~~~~~Kl~~~----~~s~~~K-~~~~~~ei~~~e~~~~~a~~~~e~is~~~k~El~rF~~~------r 184 (216)
T cd07627 116 YWQSAESELSKKKAQLEKLKRQ----GKTQQEK-LNSLLSELEEAERRASELKKEFEEVSELIKSELERFERE------R 184 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc----CCChHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H
Confidence 4555666666666555554320 0000122 234445566677777777777777777777666667543 1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 038630 820 PFRIFMIVRDFLAILDHVCKEVGKMQER 847 (885)
Q Consensus 820 P~efF~il~dFl~~ldka~kE~~k~~er 847 (885)
-.+|=..|.+|+...-...+++-+.+|+
T Consensus 185 ~~dfk~~l~~~~e~~ie~~k~~ie~We~ 212 (216)
T cd07627 185 VEDFRNSVEIYLESAIESQKELIELWET 212 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2356678888888888888888777764
No 42
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=55.89 E-value=1.4e+02 Score=33.25 Aligned_cols=31 Identities=26% Similarity=0.438 Sum_probs=20.4
Q ss_pred eeeeccchhcccccccC--------CCCccHHHHHHHHH
Q 038630 659 KAFKLDTLLKLVDIKGT--------DGKTTLLHFVVQEI 689 (885)
Q Consensus 659 ~GFkLdSL~KL~dtKs~--------D~k~TLLhyLvq~I 689 (885)
.+|+++.=.|+.|+|.. +.+.+|.+.|-+++
T Consensus 106 ~~~~~~l~~k~~dlk~~R~Laseit~~GA~LydlL~kE~ 144 (267)
T PF10234_consen 106 SLFKFDLSSKIQDLKAARQLASEITQRGASLYDLLGKEV 144 (267)
T ss_pred chhhcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhchH
Confidence 56777766788888862 34556666665544
No 43
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=55.33 E-value=82 Score=30.04 Aligned_cols=69 Identities=16% Similarity=0.123 Sum_probs=49.3
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038630 736 AAGMDSDVLSSYVMKLEMGLEKVRLVLQYEKPDMQGKFFHSMKMFLKEAEEEIARIKADERMALSLVKEVTE 807 (885)
Q Consensus 736 AAkvdld~L~~dv~kLe~gl~kv~~~Lq~~~~~~~d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~~ 807 (885)
|.+-+++.|.+.+.+.++.+..++..++... ...=...+..-+.+.+.+++.+.+.++.+.....-|++
T Consensus 32 a~~~~~~~l~~~~~~~~~Rl~~lE~~l~~LP---t~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lLlE 100 (106)
T PF10805_consen 32 AKREDIEKLEERLDEHDRRLQALETKLEHLP---TRDDVHDLQLELAELRGELKELSARLQGVSHQLDLLLE 100 (106)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777888888888999999888887764 22334567777778888888888877766655555544
No 44
>PF13127 DUF3955: Protein of unknown function (DUF3955)
Probab=55.31 E-value=8.3 Score=33.58 Aligned_cols=39 Identities=31% Similarity=0.337 Sum_probs=24.8
Q ss_pred CcccchhHHHHHHHHHHhhcccccccCCCccccccccccCCC
Q 038630 1 MKAYHLNLFLILSLSISCIAESDISIGISSSIQRRILHQPLF 42 (885)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~lhqp~f 42 (885)
||.|.+.++++++-..+.+.... -+|..+.==+||||||
T Consensus 1 m~~~~l~~~~~llg~~~l~i~~~---~~syVd~~G~L~EpFf 39 (63)
T PF13127_consen 1 MKKYILSLILLLLGVVCLFIFNI---IGSYVDEDGVLHEPFF 39 (63)
T ss_pred CcchHHHHHHHHHHHHHHHHHhc---ccceECCCCeEecccH
Confidence 88898888777655444333322 2233466779999974
No 45
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=54.01 E-value=15 Score=39.05 Aligned_cols=28 Identities=18% Similarity=0.242 Sum_probs=16.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhccC
Q 038630 118 VAIAISVGIVTLGMLSALAFFLYRHRVK 145 (885)
Q Consensus 118 ~~iai~~~~~~~~~~~~~~~f~~~~r~~ 145 (885)
|+|+++.+++.++++.+.+||++.||..
T Consensus 103 I~lv~~g~~lLla~~~~~~Y~~~~Rrs~ 130 (202)
T PF06365_consen 103 IALVTSGSFLLLAILLGAGYCCHQRRSW 130 (202)
T ss_pred EehHHhhHHHHHHHHHHHHHHhhhhccC
Confidence 4444455557777776777777644443
No 46
>PF10455 BAR_2: Bin/amphiphysin/Rvs domain for vesicular trafficking; InterPro: IPR018859 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. This entry identifies several fungal BAR domain proteins, such as Gvp36, that are not found by IPR004148 from INTERPRO [].
Probab=52.69 E-value=3.1e+02 Score=30.95 Aligned_cols=24 Identities=21% Similarity=0.245 Sum_probs=13.8
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHH
Q 038630 606 ANFDAEVKYLRKSYQTLEAASEEL 629 (885)
Q Consensus 606 ~~F~~~v~~l~~~l~~l~~A~~eL 629 (885)
.++..++-+|+...+.|..+|+.|
T Consensus 24 SeLP~eY~~LE~k~D~l~~~~~~~ 47 (289)
T PF10455_consen 24 SELPQEYLELEKKVDALKKVYKRL 47 (289)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666544
No 47
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=52.09 E-value=4.1 Score=41.28 Aligned_cols=35 Identities=26% Similarity=0.393 Sum_probs=18.0
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHh-h--hhccCCCCCc
Q 038630 116 KKVAIAISVGIVTLGMLSALAFFL-Y--RHRVKHPGES 150 (885)
Q Consensus 116 ~k~~iai~~~~~~~~~~~~~~~f~-~--~~r~~~~~~~ 150 (885)
++++|-+.+|+..+++|+++++++ | |+|+.++.|+
T Consensus 48 knIVIGvVVGVGg~ill~il~lvf~~c~r~kktdfidS 85 (154)
T PF04478_consen 48 KNIVIGVVVGVGGPILLGILALVFIFCIRRKKTDFIDS 85 (154)
T ss_pred ccEEEEEEecccHHHHHHHHHhheeEEEecccCccccC
Confidence 447777777765555554444432 2 3344444443
No 48
>PF15102 TMEM154: TMEM154 protein family
Probab=51.87 E-value=16 Score=36.94 Aligned_cols=7 Identities=14% Similarity=0.131 Sum_probs=3.9
Q ss_pred CCCCCCC
Q 038630 97 SSSNGSI 103 (885)
Q Consensus 97 pa~~ss~ 103 (885)
.||+.+-
T Consensus 37 ta~~~st 43 (146)
T PF15102_consen 37 TANINST 43 (146)
T ss_pred ccccCcc
Confidence 5555554
No 49
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=51.84 E-value=3.2e+02 Score=29.04 Aligned_cols=78 Identities=8% Similarity=0.020 Sum_probs=45.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccC----ChhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 038630 771 GKFFHSMKMFLKEAEEEIARIKADERMALSLVKEVTEYFHGNAAKEEA----HPFRIFMIVRDFLAILDHVCKEVGKMQE 846 (885)
Q Consensus 771 d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~~YFGEd~~k~e~----~P~efF~il~dFl~~ldka~kE~~k~~e 846 (885)
....+.|..|+++=-..++.++..++++.+.|...+.-+.--+++... .-+++...=+.|...=-+.+-.+..+|+
T Consensus 86 ~~l~~pL~~F~k~dL~~~KE~rK~Fdk~se~yd~al~k~~~~k~kk~~~l~Ea~~~L~~~Rk~f~~asLdyv~~ln~iq~ 165 (200)
T cd07637 86 RSVRQQLHSFVKEDVRKFKETKKQFDKVREDLEIALVKNAQAPRHKPHEVEEATSTLTITRKCFRHLALDYVLQINVLQA 165 (200)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355677777887777777777777888777777666655433222110 1134444555555544455555555666
Q ss_pred hh
Q 038630 847 RT 848 (885)
Q Consensus 847 r~ 848 (885)
|+
T Consensus 166 kK 167 (200)
T cd07637 166 KK 167 (200)
T ss_pred HH
Confidence 54
No 50
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=50.98 E-value=1.3e+02 Score=39.50 Aligned_cols=14 Identities=21% Similarity=0.380 Sum_probs=9.7
Q ss_pred CCCcceeecccccC
Q 038630 168 PPSSFLYIGTVEPS 181 (885)
Q Consensus 168 ~~s~~ly~gt~~~~ 181 (885)
--+|-+-||.+.+-
T Consensus 1396 gvsEnImlgqlap~ 1409 (1605)
T KOG0260|consen 1396 GVSENIMLGQLAPM 1409 (1605)
T ss_pred cceeeeeecccccC
Confidence 45677788877764
No 51
>PF14914 LRRC37AB_C: LRRC37A/B like protein 1 C-terminal domain
Probab=49.55 E-value=21 Score=36.05 Aligned_cols=33 Identities=24% Similarity=0.370 Sum_probs=20.1
Q ss_pred CchhhhHHHHHHHHHHHHHHHHH-HhhhhccCCC
Q 038630 115 AKKVAIAISVGIVTLGMLSALAF-FLYRHRVKHP 147 (885)
Q Consensus 115 ~~k~~iai~~~~~~~~~~~~~~~-f~~~~r~~~~ 147 (885)
.+|+++||++..+...++.+++. ..|+||+...
T Consensus 118 ~nklilaisvtvv~~iliii~CLiei~shr~a~~ 151 (154)
T PF14914_consen 118 NNKLILAISVTVVVMILIIIFCLIEICSHRRASE 151 (154)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 46788888877654444433333 4457777654
No 52
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=49.45 E-value=23 Score=33.72 Aligned_cols=23 Identities=17% Similarity=-0.038 Sum_probs=11.2
Q ss_pred CCchhhhHHHHHHHHHHHHHHHHH
Q 038630 114 PAKKVAIAISVGIVTLGMLSALAF 137 (885)
Q Consensus 114 ~~~k~~iai~~~~~~~~~~~~~~~ 137 (885)
+++..+.. +.|+++++++|+|+|
T Consensus 13 ~g~sW~~L-VGVv~~al~~SlLIa 35 (102)
T PF15176_consen 13 GGRSWPFL-VGVVVTALVTSLLIA 35 (102)
T ss_pred CCcccHhH-HHHHHHHHHHHHHHH
Confidence 35555553 333444455555555
No 53
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]
Probab=48.20 E-value=2.4e+02 Score=33.13 Aligned_cols=10 Identities=30% Similarity=0.630 Sum_probs=5.1
Q ss_pred CHHHHHHHHH
Q 038630 532 TRDEVSEALL 541 (885)
Q Consensus 532 s~eeI~~AIl 541 (885)
+.+|...+++
T Consensus 471 tkDDaY~~FM 480 (487)
T KOG4672|consen 471 TKDDAYNAFM 480 (487)
T ss_pred cchHHHHHHH
Confidence 4455555544
No 54
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=48.06 E-value=13 Score=47.64 Aligned_cols=17 Identities=6% Similarity=0.165 Sum_probs=8.0
Q ss_pred HHHHHHhcHHHHHHHHH
Q 038630 625 ASEELKNSRLFLKLLEA 641 (885)
Q Consensus 625 A~~eLr~S~~L~~lL~~ 641 (885)
-+.+||.++.+++|..+
T Consensus 628 lM~QIraCKd~KhliyY 644 (2365)
T COG5178 628 LMKQIRACKDWKHLIYY 644 (2365)
T ss_pred HHHHHHHhhhHHHHHHH
Confidence 34444444555544444
No 55
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=47.53 E-value=2.5e+02 Score=31.91 Aligned_cols=36 Identities=22% Similarity=0.284 Sum_probs=21.6
Q ss_pred ccccchhhhh-hhcCCCHHHHHHHHHHHHHHHHHHHH
Q 038630 725 GLSRDLSNVK-KAAGMDSDVLSSYVMKLEMGLEKVRL 760 (885)
Q Consensus 725 ~l~~EL~~V~-kAAkvdld~L~~dv~kLe~gl~kv~~ 760 (885)
.|.+.|..|. +-..|+..+|...+.+++..|...++
T Consensus 52 ~fA~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~ 88 (301)
T PF06120_consen 52 EFADSLDELKEKLKEMSSTQLRANIAKAEESIAAQKR 88 (301)
T ss_pred HHHHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 4555555544 33457777777777777666655443
No 56
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=47.32 E-value=1.8e+02 Score=24.80 Aligned_cols=25 Identities=4% Similarity=0.015 Sum_probs=16.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHH
Q 038630 770 QGKFFHSMKMFLKEAEEEIARIKAD 794 (885)
Q Consensus 770 ~d~F~e~m~~Fl~~Ae~ei~~L~~~ 794 (885)
.+.|.+.+..|......-++.|...
T Consensus 46 ~~af~~~~~~~~~~~~~~~~~L~~~ 70 (86)
T PF06013_consen 46 ADAFQDKFEEWNQAFRQLNEALEEL 70 (86)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678888887777766655555443
No 57
>PF08855 DUF1825: Domain of unknown function (DUF1825); InterPro: IPR014954 These roteins are uncharacterised and are principally found in cyanobacteria.
Probab=46.72 E-value=2.8e+02 Score=26.91 Aligned_cols=95 Identities=7% Similarity=0.089 Sum_probs=54.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCchhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhccCC
Q 038630 740 DSDVLSSYVMKLEMGLEKVRLVLQYEK---PDMQGKFFHSMKMFLKEAEEEIARIKA----DERMALSLVKEVTEYFHGN 812 (885)
Q Consensus 740 dld~L~~dv~kLe~gl~kv~~~Lq~~~---~~~~d~F~e~m~~Fl~~Ae~ei~~L~~----~~~~a~~~~kel~~YFGEd 812 (885)
+.+.+..++++|-..++.|-....... .+..-.|.+.|..-++.-+.-+.+|+= +.+.+.+..+..+.-||-.
T Consensus 6 ~SeiVq~e~~~if~~yq~l~~~~~~~~~fd~egK~~~Id~m~~LidkqkiF~~Rl~LSdD~~Ak~m~~qi~~~~~~fG~~ 85 (108)
T PF08855_consen 6 DSEIVQDELQDIFEDYQELMQMGSKYGKFDREGKKIHIDKMEELIDKQKIFYKRLELSDDPEAKDMKEQINAQLNQFGYT 85 (108)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHcCCC
Confidence 456667777777776666554332211 111235677777777776666665532 2345777888888899865
Q ss_pred CccccCChhhhHHHHHHHHHHHHHHHHHH
Q 038630 813 AAKEEAHPFRIFMIVRDFLAILDHVCKEV 841 (885)
Q Consensus 813 ~~k~e~~P~efF~il~dFl~~ldka~kE~ 841 (885)
+ ..+-..+..-...|+++.+|+
T Consensus 86 ~-------~~l~~~fd~m~~tLe~mkq~~ 107 (108)
T PF08855_consen 86 P-------QDLSQMFDQMNQTLERMKQEI 107 (108)
T ss_pred c-------chHHHHHHHHHHHHHHHHHhc
Confidence 4 122333444445555555543
No 58
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=46.60 E-value=1.8e+02 Score=37.78 Aligned_cols=32 Identities=19% Similarity=0.186 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhcHHHHHHHHHHHhhccccccCC
Q 038630 620 QTLEAASEELKNSRLFLKLLEAVLKTGNRMNVGT 653 (885)
Q Consensus 620 ~~l~~A~~eLr~S~~L~~lL~~VLaiGN~LN~gt 653 (885)
+.+..|++.|.=+..+...|++| +||++-..+
T Consensus 599 ~~v~~al~Li~yd~~l~~amefv--FG~tlVc~~ 630 (1174)
T KOG0933|consen 599 DNVELALSLIGYDDELKKAMEFV--FGSTLVCDS 630 (1174)
T ss_pred chHHHHHHHhcCCHHHHHHHHHH--hCceEEecC
Confidence 45677888888899999999987 899887765
No 59
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=46.56 E-value=3.3e+02 Score=27.92 Aligned_cols=28 Identities=18% Similarity=0.284 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038630 779 MFLKEAEEEIARIKADERMALSLVKEVT 806 (885)
Q Consensus 779 ~Fl~~Ae~ei~~L~~~~~~a~~~~kel~ 806 (885)
.+.+..+++++.++..++.+.+.+.++.
T Consensus 123 ~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 123 ELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777777777777666666555555
No 60
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.25 E-value=50 Score=35.60 Aligned_cols=51 Identities=18% Similarity=0.208 Sum_probs=36.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcccccCCCCccccccccccc
Q 038630 820 PFRIFMIVRDFLAILDHVCKEVGKMQERTMVGSARSFRISATASLPVLNRYNVR 873 (885)
Q Consensus 820 P~efF~il~dFl~~ldka~kE~~k~~er~~v~~~r~f~~~~~~~~~~~~~~~~~ 873 (885)
..+=+.+|.|.-..|.+++.-+..++||..+-+...-.+.. .+...+++++
T Consensus 91 L~RHrEILqdy~qef~rir~n~~a~~e~~~Ll~s~~~~~~~---~~~~~~~~~~ 141 (231)
T KOG3208|consen 91 LQRHREILQDYTQEFRRIRSNIDAKRERESLLESVRADISS---YPSASGFNRG 141 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc---CCccCCCchH
Confidence 35678999999999999999999999997664333333333 3455555555
No 61
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=45.62 E-value=3.7e+02 Score=35.79 Aligned_cols=9 Identities=56% Similarity=0.685 Sum_probs=3.5
Q ss_pred hhhHHHHHH
Q 038630 118 VAIAISVGI 126 (885)
Q Consensus 118 ~~iai~~~~ 126 (885)
+=||-.++|
T Consensus 1306 ~ei~~vlgI 1314 (1605)
T KOG0260|consen 1306 VEIAEVLGI 1314 (1605)
T ss_pred hhhhhhhcH
Confidence 334334443
No 62
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=45.33 E-value=1.8e+02 Score=25.02 Aligned_cols=22 Identities=27% Similarity=0.249 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 038630 741 SDVLSSYVMKLEMGLEKVRLVL 762 (885)
Q Consensus 741 ld~L~~dv~kLe~gl~kv~~~L 762 (885)
++.|..+|..|...+..+...+
T Consensus 5 id~Ls~dVq~L~~kvdqLs~dv 26 (56)
T PF04728_consen 5 IDQLSSDVQTLNSKVDQLSSDV 26 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666666655544
No 63
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=45.22 E-value=71 Score=37.75 Aligned_cols=83 Identities=12% Similarity=0.186 Sum_probs=47.5
Q ss_pred hcccccchhhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcC------CCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 038630 723 VSGLSRDLSNVKKAAGMDSDVLSSYVMKLEMGLEKVRLVLQYEK------PDMQGKFFHSMKMFLKEAEEEIARIKADER 796 (885)
Q Consensus 723 V~~l~~EL~~V~kAAkvdld~L~~dv~kLe~gl~kv~~~Lq~~~------~~~~d~F~e~m~~Fl~~Ae~ei~~L~~~~~ 796 (885)
+..+..|+.+++++.+ .++.-+.++...++++.++++..+ ....+-+..++++-.+.-++.+...++...
T Consensus 363 ~~~l~~~~~~~e~~kk----~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~ 438 (493)
T KOG0804|consen 363 ADSLKQESSDLEAEKK----IVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKIT 438 (493)
T ss_pred HHhhhhhhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555554433 344455556666666655554332 112345566666666666666666666666
Q ss_pred HHHHHHHHHHHhc
Q 038630 797 MALSLVKEVTEYF 809 (885)
Q Consensus 797 ~a~~~~kel~~YF 809 (885)
+..+.+++|+-|+
T Consensus 439 dLqEQlrDlmf~l 451 (493)
T KOG0804|consen 439 DLQEQLRDLMFFL 451 (493)
T ss_pred HHHHHHHhHheeh
Confidence 7777777887766
No 64
>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified
Probab=44.96 E-value=4.4e+02 Score=28.62 Aligned_cols=59 Identities=12% Similarity=0.098 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccCChhhhHHHHHHHHHHHHHHHHHHHHHh
Q 038630 784 AEEEIARIKADERMALSLVKEVTEYFHGNAAKEEAHPFRIFMIVRDFLAILDHVCKEVGKMQ 845 (885)
Q Consensus 784 Ae~ei~~L~~~~~~a~~~~kel~~YFGEd~~k~e~~P~efF~il~dFl~~ldka~kE~~k~~ 845 (885)
|+.+|...++.+.+..+..+.++.=+-+.... +...+...|..-+.-+.+|.+.+..++
T Consensus 159 ae~elr~A~~kf~~~~E~a~~~M~~il~~~~e---~l~~L~~lv~AQl~Yh~q~~e~L~~l~ 217 (220)
T cd07617 159 AEHELRVAQTEFDRQAEVTRLLLEGISSTHVN---HLRCLHEFVEAQATYYAQCYRHMLDLQ 217 (220)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhcChH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888888877777666666655443211 222344444444555556555555544
No 65
>PF14610 DUF4448: Protein of unknown function (DUF4448)
Probab=44.81 E-value=7.1 Score=40.57 Aligned_cols=31 Identities=26% Similarity=0.361 Sum_probs=17.1
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHhhhhccCC
Q 038630 116 KKVAIAISVGIVTLGMLSALAFFLYRHRVKH 146 (885)
Q Consensus 116 ~k~~iai~~~~~~~~~~~~~~~f~~~~r~~~ 146 (885)
.++++||++.++.++++.++++|+++.|+++
T Consensus 156 ~~~~laI~lPvvv~~~~~~~~~~~~~~R~~R 186 (189)
T PF14610_consen 156 GKYALAIALPVVVVVLALIMYGFFFWNRKKR 186 (189)
T ss_pred cceeEEEEccHHHHHHHHHHHhhheeeccce
Confidence 3456666666666666555555555444433
No 66
>PHA03283 envelope glycoprotein E; Provisional
Probab=44.56 E-value=1.1e+02 Score=37.02 Aligned_cols=10 Identities=40% Similarity=0.886 Sum_probs=3.8
Q ss_pred HhhhhccCCC
Q 038630 138 FLYRHRVKHP 147 (885)
Q Consensus 138 f~~~~r~~~~ 147 (885)
..||+++++.
T Consensus 423 ~~~r~~~~~~ 432 (542)
T PHA03283 423 ILYRRSNRKP 432 (542)
T ss_pred eeehhhcCCc
Confidence 3333433333
No 67
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=44.28 E-value=1.1e+02 Score=33.97 Aligned_cols=83 Identities=17% Similarity=0.135 Sum_probs=40.7
Q ss_pred ccchhhhhhhcCCCHHHHHHHHHHHHHHHHHHHHH-HHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038630 727 SRDLSNVKKAAGMDSDVLSSYVMKLEMGLEKVRLV-LQYEKPDMQGKFFHSMKMFLKEAEEEIARIKADERMALSLVKEV 805 (885)
Q Consensus 727 ~~EL~~V~kAAkvdld~L~~dv~kLe~gl~kv~~~-Lq~~~~~~~d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel 805 (885)
.+.|..+++ ++++++=|.+-+.++....+..... ....+++..++..+.+..=++...+++++.++.++++...+.++
T Consensus 155 ~~~l~DLes-a~vkV~WLR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~ 233 (269)
T PF05278_consen 155 IATLKDLES-AKVKVDWLRSKLEEILEAKEIYDQHETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEM 233 (269)
T ss_pred HHHHHHHHH-cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555554 5788888887776665443332210 00000111234444444445555555555555555555555555
Q ss_pred HHhcc
Q 038630 806 TEYFH 810 (885)
Q Consensus 806 ~~YFG 810 (885)
+...|
T Consensus 234 ~~rl~ 238 (269)
T PF05278_consen 234 KGRLG 238 (269)
T ss_pred HHHHH
Confidence 55554
No 68
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=44.07 E-value=1.3e+02 Score=33.07 Aligned_cols=74 Identities=11% Similarity=0.210 Sum_probs=52.1
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 038630 737 AGMDSDVLSSYVMKLEMGLEKVRLVLQYEK----PDMQGKFFHSMKMFLKEAEEEIARIKADERMALSLVKEVTEYFH 810 (885)
Q Consensus 737 Akvdld~L~~dv~kLe~gl~kv~~~Lq~~~----~~~~d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~~YFG 810 (885)
..+-++.|..++..++..|+++++.+...+ ...+.+=+..+..=+..++.++..|..++..+++.++.+-.+--
T Consensus 50 ~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~ 127 (239)
T COG1579 50 LEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIE 127 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777777777766554332 12244566778888888999999999988888888888777653
No 69
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=43.34 E-value=7.2e+02 Score=30.63 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=13.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Q 038630 740 DSDVLSSYVMKLEMGLEKVRLVLQ 763 (885)
Q Consensus 740 dld~L~~dv~kLe~gl~kv~~~Lq 763 (885)
|++.+..|..+|.+.+.++..+++
T Consensus 333 dve~mn~Er~~l~r~l~~i~~~~d 356 (581)
T KOG0995|consen 333 DVERMNLERNKLKRELNKIQSELD 356 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666655443
No 70
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=43.23 E-value=8 Score=33.83 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=0.7
Q ss_pred HHHHHHHHHHHHHhhhhccCCCC
Q 038630 126 IVTLGMLSALAFFLYRHRVKHPG 148 (885)
Q Consensus 126 ~~~~~~~~~~~~f~~~~r~~~~~ 148 (885)
++++.++.++.|++||-|.++.+
T Consensus 20 vgll~ailLIlf~iyR~rkkdEG 42 (64)
T PF01034_consen 20 VGLLFAILLILFLIYRMRKKDEG 42 (64)
T ss_dssp -----------------S-----
T ss_pred HHHHHHHHHHHHHHHHHHhcCCC
Confidence 33333444555566666666654
No 71
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=42.63 E-value=2.4e+02 Score=34.75 Aligned_cols=72 Identities=15% Similarity=0.233 Sum_probs=55.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccCChhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 038630 771 GKFFHSMKMFLKEAEEEIARIKADERMALSLVKEVTEYFHGNAAKEEAHPFRIFMIVRDFLAILDHVCKEVGKMQER 847 (885)
Q Consensus 771 d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~~YFGEd~~k~e~~P~efF~il~dFl~~ldka~kE~~k~~er 847 (885)
..-...|..-+..+..+|+.|-+.-+.+...|-.+++-.++-| +|.-.+.-...-+...+++.+|++++.++
T Consensus 58 e~k~k~~~~llK~yQ~EiD~LtkRsk~aE~afl~vye~L~eaP-----DP~pll~sa~~~l~k~~~~~~e~~~lk~~ 129 (629)
T KOG0963|consen 58 EDKLKMVNPLLKSYQSEIDNLTKRSKFAEAAFLDVYEKLIEAP-----DPVPLLASAAELLNKQQKASEENEELKEE 129 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhCC-----CCchHHHHHHHHhhhhhhhhhhHHHHHHH
Confidence 3456778888899999999999988889999999999888754 34455666667777777777777776654
No 72
>TIGR01167 LPXTG_anchor LPXTG-motif cell wall anchor domain. A common feature of this proteins containing this domain appears to be a high proportion of charged and zwitterionic residues immediatedly upstream of the LPXTG motif. This model differs from other descriptions of the LPXTG region by including a portion of that upstream charged region.
Probab=42.48 E-value=41 Score=24.95 Aligned_cols=9 Identities=33% Similarity=0.357 Sum_probs=3.8
Q ss_pred HHHhhhhcc
Q 038630 136 AFFLYRHRV 144 (885)
Q Consensus 136 ~~f~~~~r~ 144 (885)
+++++++|+
T Consensus 24 ~~~~~~~rk 32 (34)
T TIGR01167 24 GGLLLRKRK 32 (34)
T ss_pred HHHHheecc
Confidence 344444444
No 73
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=42.46 E-value=2.1e+02 Score=31.37 Aligned_cols=21 Identities=14% Similarity=0.316 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 038630 609 DAEVKYLRKSYQTLEAASEEL 629 (885)
Q Consensus 609 ~~~v~~l~~~l~~l~~A~~eL 629 (885)
++.+..|...++.+..+|..+
T Consensus 14 ~d~~~~lE~~~d~~k~~~~~~ 34 (244)
T cd07595 14 SDELLQIEKRVEAVKDACQNI 34 (244)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555444
No 74
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=42.41 E-value=24 Score=39.25 Aligned_cols=16 Identities=44% Similarity=0.613 Sum_probs=8.9
Q ss_pred HHHHHHHHHhhhhccC
Q 038630 130 GMLSALAFFLYRHRVK 145 (885)
Q Consensus 130 ~~~~~~~~f~~~~r~~ 145 (885)
+||.||-.||||||.+
T Consensus 273 vvliiLYiWlyrrRK~ 288 (295)
T TIGR01478 273 VVLIILYIWLYRRRKK 288 (295)
T ss_pred HHHHHHHHHHHHhhcc
Confidence 3344555567766655
No 75
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=42.36 E-value=4.1e+02 Score=27.48 Aligned_cols=40 Identities=15% Similarity=0.216 Sum_probs=20.8
Q ss_pred chhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhc
Q 038630 770 QGKFFHSMKMFLKEAEEE-IARIKADERMALSLVKEVTEYF 809 (885)
Q Consensus 770 ~d~F~e~m~~Fl~~Ae~e-i~~L~~~~~~a~~~~kel~~YF 809 (885)
.++-.+.++.|+.++-.- +..+....+.....++.+..|.
T Consensus 44 kGka~dsiK~y~~~vh~pll~~~~~~~~~~~~~l~~~~~~~ 84 (204)
T PF04740_consen 44 KGKAYDSIKNYFSEVHIPLLQGLILLLEEYQEALKFIKDFQ 84 (204)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 456677778877774333 3344444444444443344443
No 76
>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It
Probab=41.85 E-value=2.9e+02 Score=29.97 Aligned_cols=42 Identities=21% Similarity=0.198 Sum_probs=34.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 038630 770 QGKFFHSMKMFLKEAEEEIARIKADERMALSLVKEVTEYFHG 811 (885)
Q Consensus 770 ~d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~~YFGE 811 (885)
.|.|++..+.|+.+.+..|..+......|...-++++.-||.
T Consensus 21 ~D~~Fe~~k~~l~~l~~~Lk~a~~~~~~lv~~rkela~~~~~ 62 (218)
T cd07663 21 VDEFFEQEKTFLVNYYNRIKDSCAKADKMTRSHKNVADDYIH 62 (218)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999888888888777777766654
No 77
>PRK11637 AmiB activator; Provisional
Probab=41.81 E-value=3e+02 Score=32.24 Aligned_cols=24 Identities=17% Similarity=0.324 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 038630 781 LKEAEEEIARIKADERMALSLVKE 804 (885)
Q Consensus 781 l~~Ae~ei~~L~~~~~~a~~~~ke 804 (885)
++..+.+|..+++.+....+.+++
T Consensus 105 i~~l~~eI~~~q~~l~~~~~~l~~ 128 (428)
T PRK11637 105 IDELNASIAKLEQQQAAQERLLAA 128 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444433
No 78
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=41.38 E-value=3e+02 Score=25.59 Aligned_cols=60 Identities=7% Similarity=0.096 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC--CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038630 743 VLSSYVMKLEMGLEKVRLVLQYEKP--DMQGKFFHSMKMFLKEAEEEIARIKADERMALSLV 802 (885)
Q Consensus 743 ~L~~dv~kLe~gl~kv~~~Lq~~~~--~~~d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~ 802 (885)
.|..+|..|+..+..++...+.... +......+.|..-++.+......++..++.+....
T Consensus 12 ~I~~~I~~i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~ 73 (117)
T smart00503 12 EIRANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKELEKEN 73 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3444555555555444443332221 11134566666666666666666666666554433
No 79
>PTZ00370 STEVOR; Provisional
Probab=41.37 E-value=26 Score=39.12 Aligned_cols=15 Identities=40% Similarity=0.674 Sum_probs=8.4
Q ss_pred HHHHHHHHhhhhccC
Q 038630 131 MLSALAFFLYRHRVK 145 (885)
Q Consensus 131 ~~~~~~~f~~~~r~~ 145 (885)
||.||-.||||||.+
T Consensus 270 vliilYiwlyrrRK~ 284 (296)
T PTZ00370 270 VLIILYIWLYRRRKN 284 (296)
T ss_pred HHHHHHHHHHHhhcc
Confidence 344455567766655
No 80
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=41.06 E-value=41 Score=26.66 Aligned_cols=28 Identities=14% Similarity=0.460 Sum_probs=15.3
Q ss_pred hhhHHHHHHHHHHHHHHHHH-HhhhhccCC
Q 038630 118 VAIAISVGIVTLGMLSALAF-FLYRHRVKH 146 (885)
Q Consensus 118 ~~iai~~~~~~~~~~~~~~~-f~~~~r~~~ 146 (885)
+++|+.+|++.+. +.+..| +.||++++|
T Consensus 8 IIv~V~vg~~iii-i~~~~YaCcykk~~~~ 36 (38)
T PF02439_consen 8 IIVAVVVGMAIII-ICMFYYACCYKKHRRQ 36 (38)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHcccccc
Confidence 4455555555444 445555 666555545
No 81
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=41.05 E-value=1.6e+02 Score=29.01 Aligned_cols=34 Identities=21% Similarity=0.395 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038630 774 FHSMKMFLKEAEEEIARIKADERMALSLVKEVTE 807 (885)
Q Consensus 774 ~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~~ 807 (885)
++.+-..+.+-.++++.|+.+...+...|+..+.
T Consensus 84 y~t~LellGEK~E~veEL~~Dv~DlK~myr~Qi~ 117 (120)
T PF12325_consen 84 YQTLLELLGEKSEEVEELRADVQDLKEMYREQID 117 (120)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888899999999999999999987654
No 82
>PF06084 Cytomega_TRL10: Cytomegalovirus TRL10 protein; InterPro: IPR009284 This family consists of several Cytomegalovirus TRL10 proteins. TRL10 represents a structural component of the virus particle and like the other HCMV envelope glycoproteins, is present in a disulphide-linked complex [].
Probab=41.03 E-value=24 Score=34.23 Aligned_cols=19 Identities=37% Similarity=0.518 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHhhhhccC
Q 038630 126 IVTLGMLSALAFFLYRHRVK 145 (885)
Q Consensus 126 ~~~~~~~~~~~~f~~~~r~~ 145 (885)
+|+|.+| +.+||.+-.|-+
T Consensus 66 iatliil-lviffviy~re~ 84 (150)
T PF06084_consen 66 IATLIIL-LVIFFVIYSREE 84 (150)
T ss_pred HHHHHHH-HHHhheeEeccc
Confidence 3444444 555665544443
No 83
>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]. CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.
Probab=40.75 E-value=2e+02 Score=30.91 Aligned_cols=68 Identities=16% Similarity=0.166 Sum_probs=31.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038630 740 DSDVLSSYVMKLEMGLEKVRLVL-QYEKPDMQGKFFHSMKMFLKEAEEEIARIKADERMALSLVKEVTE 807 (885)
Q Consensus 740 dld~L~~dv~kLe~gl~kv~~~L-q~~~~~~~d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~~ 807 (885)
++-.+..++..+++.+...++.+ +.........+.+.....+++...++..+.+..+...+....+..
T Consensus 152 ~l~~l~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 220 (292)
T PF01544_consen 152 ELFDLRRELSRLRRSLSPLREVLQRLLRRDDSPFISDEDKEYLRDLLDRIERLLERAESLRERLESLQD 220 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666777766666666665 222211112222233344455555555544444444444444433
No 84
>PHA03291 envelope glycoprotein I; Provisional
Probab=40.66 E-value=1.6e+02 Score=33.93 Aligned_cols=33 Identities=27% Similarity=0.327 Sum_probs=23.5
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHhh-hhccCCCC
Q 038630 116 KKVAIAISVGIVTLGMLSALAFFLY-RHRVKHPG 148 (885)
Q Consensus 116 ~k~~iai~~~~~~~~~~~~~~~f~~-~~r~~~~~ 148 (885)
..+-|||=|+|.+..+|+--++||. +|||+++.
T Consensus 287 qiiQiAIPasii~cV~lGSC~Ccl~R~~rRr~r~ 320 (401)
T PHA03291 287 QIIQIAIPASIIACVFLGSCACCLHRRCRRRRRR 320 (401)
T ss_pred hhheeccchHHHHHhhhhhhhhhhhhhhhcccCC
Confidence 3377889888888888877777776 55555553
No 85
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=40.64 E-value=9.2 Score=42.73 Aligned_cols=24 Identities=21% Similarity=0.207 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCC
Q 038630 126 IVTLGMLSALAFFLYRHRVKHPGE 149 (885)
Q Consensus 126 ~~~~~~~~~~~~f~~~~r~~~~~~ 149 (885)
+|.++++++.|+.+||+||+++..
T Consensus 156 ~~iLLIA~iIa~icyrrkR~GK~~ 179 (290)
T PF05454_consen 156 AAILLIAGIIACICYRRKRKGKMS 179 (290)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHhhhhhhccccc
Confidence 333444566677888988887753
No 86
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=40.62 E-value=2.2e+02 Score=26.01 Aligned_cols=37 Identities=22% Similarity=0.240 Sum_probs=29.7
Q ss_pred hhhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 038630 730 LSNVKKAAGMDSDVLSSYVMKLEMGLEKVRLVLQYEK 766 (885)
Q Consensus 730 L~~V~kAAkvdld~L~~dv~kLe~gl~kv~~~Lq~~~ 766 (885)
|..+.+-..++..++...+..|+..|++++..++...
T Consensus 12 l~~~~~d~~~~~kd~~~~~~~lk~Klq~ar~~i~~lp 48 (83)
T PF07544_consen 12 LHQISKDPPLSSKDLDTATGSLKHKLQKARAAIRELP 48 (83)
T ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3344443678899999999999999999999987764
No 87
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=40.34 E-value=1.6e+02 Score=32.43 Aligned_cols=67 Identities=13% Similarity=0.180 Sum_probs=37.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc-c---ccCChhhhHHHHHHHHHHHHHHHHHHHH
Q 038630 772 KFFHSMKMFLKEAEEEIARIKADERMALSLVKEVTEYFHGNAA-K---EEAHPFRIFMIVRDFLAILDHVCKEVGK 843 (885)
Q Consensus 772 ~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~~YFGEd~~-k---~e~~P~efF~il~dFl~~ldka~kE~~k 843 (885)
+|-..-..|+ .++..|++++..+...-.++-+|.-|=.. . +.+.. .--..+.||-..|++|...+.-
T Consensus 81 k~e~q~~q~y----~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakR-ati~sleDfeqrLnqAIErnAf 151 (333)
T KOG1853|consen 81 KQEDQRVQFY----QQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKR-ATIYSLEDFEQRLNQAIERNAF 151 (333)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhh-hhhhhHHHHHHHHHHHHHHHHH
Confidence 4444444444 44556666666666655666666553111 0 11111 1234578999999999877665
No 88
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=40.13 E-value=3e+02 Score=25.23 Aligned_cols=27 Identities=7% Similarity=0.151 Sum_probs=17.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 038630 771 GKFFHSMKMFLKEAEEEIARIKADERM 797 (885)
Q Consensus 771 d~F~e~m~~Fl~~Ae~ei~~L~~~~~~ 797 (885)
..+.+.|..-...+.+.+..+...+..
T Consensus 29 ~~lR~~i~~~~~~~~~l~k~~~~~l~~ 55 (102)
T PF14523_consen 29 QELREKIHQLIQKTNQLIKEISELLKK 55 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477777776666666666665554443
No 89
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=40.06 E-value=30 Score=40.72 Aligned_cols=56 Identities=27% Similarity=0.220 Sum_probs=37.4
Q ss_pred HHHHhcHHHHHHHHHHHhhccccccCCCCCceeeeec---cchhccccc----ccCCCCccHHHHHHH
Q 038630 627 EELKNSRLFLKLLEAVLKTGNRMNVGTNRGDAKAFKL---DTLLKLVDI----KGTDGKTTLLHFVVQ 687 (885)
Q Consensus 627 ~eLr~S~~L~~lL~~VLaiGN~LN~gt~rG~A~GFkL---dSL~KL~dt----Ks~D~k~TLLhyLvq 687 (885)
..+..|..-.-+...+|+||||.-. ++....+ +.+.||.++ |+.|++.++-|-...
T Consensus 321 ~sw~~S~d~~l~t~g~LaigNfaR~-----D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~ls 383 (604)
T KOG4500|consen 321 ESWFRSDDSNLITMGSLAIGNFARR-----DDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLS 383 (604)
T ss_pred HHHhcCCchhHHHHHHHHHHhhhcc-----chHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHH
Confidence 3344566666677889999999743 3333332 567777765 667888888888764
No 90
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=40.03 E-value=3.4e+02 Score=29.87 Aligned_cols=14 Identities=7% Similarity=0.342 Sum_probs=7.5
Q ss_pred hhhHHHHHHHHHHH
Q 038630 771 GKFFHSMKMFLKEA 784 (885)
Q Consensus 771 d~F~e~m~~Fl~~A 784 (885)
+.|...++.++.-+
T Consensus 132 ~~yl~~Lke~~~Y~ 145 (240)
T cd07667 132 EDFLPVLREYILYS 145 (240)
T ss_pred HHHHHHHHHHHHHH
Confidence 45666666554443
No 91
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=39.20 E-value=1.3e+02 Score=34.50 Aligned_cols=69 Identities=23% Similarity=0.145 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhccCCCcc
Q 038630 742 DVLSSYVMKLEMGLEKVRLVLQYEKPDMQGKFFHSMKMFLKEAEEEIARIKA-----DERMALSLVKEVTEYFHGNAAK 815 (885)
Q Consensus 742 d~L~~dv~kLe~gl~kv~~~Lq~~~~~~~d~F~e~m~~Fl~~Ae~ei~~L~~-----~~~~a~~~~kel~~YFGEd~~k 815 (885)
++|....++|+...+.+++++... ++-.++++.+.++|.++.+.+++ ....+.-+++++++-+.+|.+.
T Consensus 242 EeL~~G~~kL~~~~etLEqq~~~L-----~~niDIL~~k~~eal~~~~n~~~~~~D~~~~~~~~l~kq~l~~~A~d~ai 315 (365)
T KOG2391|consen 242 EELNIGKQKLVAMKETLEQQLQSL-----QKNIDILKSKVREALEKAENLEALDIDEAIECTAPLYKQILECYALDLAI 315 (365)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHH-----HhhhHHHHHHHHHHHhhhccCcCCCchhhhhccchHHHHHHHhhhhhhHH
Confidence 444555555555555555444332 13356777777777666665332 2333455677777766666554
No 92
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=38.89 E-value=1.4e+02 Score=31.69 Aligned_cols=20 Identities=25% Similarity=0.336 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 038630 741 SDVLSSYVMKLEMGLEKVRL 760 (885)
Q Consensus 741 ld~L~~dv~kLe~gl~kv~~ 760 (885)
++.++++|.+|+..|+++.+
T Consensus 4 ~~~~E~~~~~le~~l~kl~K 23 (200)
T cd07637 4 IDEVETDVVEIEAKLDKLVK 23 (200)
T ss_pred HHHHHhhHHHHHHHHHHHHH
Confidence 44555566666666555544
No 93
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=38.85 E-value=1.6e+02 Score=30.08 Aligned_cols=66 Identities=15% Similarity=0.105 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 038630 742 DVLSSYVMKLEMGLEKVRLVLQYEKPDMQGKFF--HSMKMFLKEAEEEIARIKADERMALSLVKEVTEYF 809 (885)
Q Consensus 742 d~L~~dv~kLe~gl~kv~~~Lq~~~~~~~d~F~--e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~~YF 809 (885)
.....+..+|++++.++++++.... .+|.|. .+++.=++..++|++++++........++....|+
T Consensus 36 ~~~~~~~~~l~~Ei~~l~~E~~~iS--~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~~ 103 (161)
T PF04420_consen 36 SKSSKEQRQLRKEILQLKRELNAIS--AQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSKV 103 (161)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTS---TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677788888888888876542 245553 35556666677777777776666655565555443
No 94
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=38.64 E-value=1.7e+02 Score=26.68 Aligned_cols=73 Identities=12% Similarity=0.221 Sum_probs=47.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccCChhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 038630 772 KFFHSMKMFLKEAEEEIARIKADERMALSLVKEVTEYFHGNAAKEEAHPFRIFMIVRDFLAILDHVCKEVGKMQER 847 (885)
Q Consensus 772 ~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~~YFGEd~~k~e~~P~efF~il~dFl~~ldka~kE~~k~~er 847 (885)
.+...+..=++.....+..+...........+++...|.+-.... .+.+.|.... ....+..+.+++..+++|
T Consensus 7 Gl~~~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~--~~~~~~~~~~-y~~KL~~ikkrm~~l~~~ 79 (92)
T PF14712_consen 7 GLLSLLEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVE--QINEPFDLDP-YVKKLVNIKKRMSNLHER 79 (92)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhhhHHHhhH-HHHHHHHHHHHHHHHHHH
Confidence 566777777788888888887777777777777777775432211 2233455555 666677777766666555
No 95
>PHA03265 envelope glycoprotein D; Provisional
Probab=38.52 E-value=15 Score=41.84 Aligned_cols=33 Identities=18% Similarity=0.362 Sum_probs=26.0
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHhhhhccCCCC
Q 038630 116 KKVAIAISVGIVTLGMLSALAFFLYRHRVKHPG 148 (885)
Q Consensus 116 ~k~~iai~~~~~~~~~~~~~~~f~~~~r~~~~~ 148 (885)
.-+-|.|.+++|.|.++++..||++|||...++
T Consensus 348 ~~~g~~ig~~i~glv~vg~il~~~~rr~k~~~k 380 (402)
T PHA03265 348 TFVGISVGLGIAGLVLVGVILYVCLRRKKELKK 380 (402)
T ss_pred cccceEEccchhhhhhhhHHHHHHhhhhhhhhh
Confidence 336666889999999999999999988876443
No 96
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=38.36 E-value=35 Score=33.63 Aligned_cols=34 Identities=15% Similarity=0.025 Sum_probs=21.5
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHhhhhccCCCCCc
Q 038630 116 KKVAIAISVGIVTLGMLSALAFFLYRHRVKHPGES 150 (885)
Q Consensus 116 ~k~~iai~~~~~~~~~~~~~~~f~~~~r~~~~~~~ 150 (885)
..-+|+..+..|.+++ .+.++|++..-||+++..
T Consensus 62 s~~~i~~Ii~gv~aGv-Ig~Illi~y~irR~~Kk~ 95 (122)
T PF01102_consen 62 SEPAIIGIIFGVMAGV-IGIILLISYCIRRLRKKS 95 (122)
T ss_dssp S-TCHHHHHHHHHHHH-HHHHHHHHHHHHHHS---
T ss_pred cccceeehhHHHHHHH-HHHHHHHHHHHHHHhccC
Confidence 4468855555554444 588889989999988553
No 97
>PF08807 DUF1798: Bacterial domain of unknown function (DUF1798); InterPro: IPR014913 This family contains many hypothetical proteins. The structure of one of them has been solved and it adopts an all alpha helical fold. ; PDB: 2HUJ_A 2ETS_A 2HFI_A 2IM8_B.
Probab=38.31 E-value=3.8e+02 Score=25.99 Aligned_cols=47 Identities=17% Similarity=0.191 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 038630 743 VLSSYVMKLEMGLEKVRLVLQYEKPDMQGKFFHSMKMFLKEAEEEIARIKADE 795 (885)
Q Consensus 743 ~L~~dv~kLe~gl~kv~~~Lq~~~~~~~d~F~e~m~~Fl~~Ae~ei~~L~~~~ 795 (885)
.|..++.++......+++ .+.+-.|.+.|++|.+...+.++..+...
T Consensus 4 qL~~~~~~~~~~y~~~k~------~~~e~DF~~~VKPf~d~vd~~l~~w~~~a 50 (111)
T PF08807_consen 4 QLIEENEEAEQRYQEVKE------EGKEYDFYEEVKPFADEVDQLLEEWKEYA 50 (111)
T ss_dssp HHHHHHHHHHHHHHHHHH------ST----TTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh------cCCCCChhhhccchhHHHHHHHHHHHHHH
Confidence 344445555544444322 22245899999999999888888766554
No 98
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=38.21 E-value=1.7e+02 Score=32.71 Aligned_cols=65 Identities=17% Similarity=0.333 Sum_probs=32.9
Q ss_pred ccHHHHHHHHHHHHhCCCCCCccccccccCccchHHHHhhchhhhcccccchhh--hhhhcCCCHHHHHHHHHHHH
Q 038630 679 TTLLHFVVQEIIRAEGAGTKSTEVNVESKNSMREDEFKKQGLEVVSGLSRDLSN--VKKAAGMDSDVLSSYVMKLE 752 (885)
Q Consensus 679 ~TLLhyLvq~Iir~e~~~L~~~n~~~~~~~~~~~E~~~k~gl~~V~~l~~EL~~--V~kAAkvdld~L~~dv~kLe 752 (885)
.+....| +.|+.++|.-. .|+ .++--.+|...+..|.++..+|.. +..-+.-++..+...|..|+
T Consensus 96 ~S~~sil-q~If~KHGDIA--sNc------~lkS~~~RS~yLe~Lc~IIqeLq~t~~~~LS~~dl~e~~~~l~DLe 162 (269)
T PF05278_consen 96 PSQVSIL-QKIFEKHGDIA--SNC------KLKSQQFRSYYLECLCDIIQELQSTPLKELSESDLKEMIATLKDLE 162 (269)
T ss_pred HhHHHHH-HHHHHhCccHh--hcc------ccCcHHHHHHHHHHHHHHHHHHhcCcHhhhhHHHHHHHHHHHHHHH
Confidence 4555555 45666655311 111 122235677777777777777743 33333344444444444443
No 99
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=37.69 E-value=1.3e+02 Score=30.47 Aligned_cols=86 Identities=17% Similarity=0.174 Sum_probs=48.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHhhhcCc---------CCCChHHHHHHHHhCcccHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 038630 550 AELLETLVKMAPTKEEEIKLREYKGDI---------LKLGSAERFLKAVLDIPFAFKRVEAMLYRANFDAEVKYLRKSYQ 620 (885)
Q Consensus 550 ~E~Le~Llk~lPT~EEi~~Lk~~~gD~---------~~L~~aEqFl~~L~~IP~l~~RL~allfk~~F~~~v~~l~~~l~ 620 (885)
....+.|..+.|+-+|++.+....++. ..|..++..+....++. |-++ +-+..|...++++...|.
T Consensus 37 ~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~LV~k~sk~~----r~n~-~kk~~y~~Ki~~le~~l~ 111 (147)
T PF05659_consen 37 KRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKELVEKCSKVR----RWNL-YKKPRYARKIEELEESLR 111 (147)
T ss_pred HHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHHHHHHhcccc----HHHH-HhhHhHHHHHHHHHHHHH
Confidence 345556778889999988877654432 22333444444444443 2222 235667777888888777
Q ss_pred HHHHHHHHHHhcHHHHHHHH
Q 038630 621 TLEAASEELKNSRLFLKLLE 640 (885)
Q Consensus 621 ~l~~A~~eLr~S~~L~~lL~ 640 (885)
.+...--++.....+++++.
T Consensus 112 ~f~~v~~q~~~~~D~~~l~~ 131 (147)
T PF05659_consen 112 RFIQVDLQLHQLRDIKELLA 131 (147)
T ss_pred HHhcchhHHHHHHHHHHHHH
Confidence 77665444444444444433
No 100
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=37.52 E-value=28 Score=38.77 Aligned_cols=29 Identities=28% Similarity=0.421 Sum_probs=14.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhccCC
Q 038630 118 VAIAISVGIVTLGMLSALAFFLYRHRVKH 146 (885)
Q Consensus 118 ~~iai~~~~~~~~~~~~~~~f~~~~r~~~ 146 (885)
+.+||+++++.|++|+.+++-+++||+.+
T Consensus 232 IslAiALG~v~ll~l~Gii~~~~~r~~~~ 260 (281)
T PF12768_consen 232 ISLAIALGTVFLLVLIGIILAYIRRRRQG 260 (281)
T ss_pred EehHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 34455555555555555555444555443
No 101
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=36.70 E-value=1.7e+02 Score=28.35 Aligned_cols=52 Identities=17% Similarity=0.160 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 038630 743 VLSSYVMKLEMGLEKVRLVLQYEKPDMQGKFFHSMKMFLKEAEEEIARIKADE 795 (885)
Q Consensus 743 ~L~~dv~kLe~gl~kv~~~Lq~~~~~~~d~F~e~m~~Fl~~Ae~ei~~L~~~~ 795 (885)
.|.+.+..|.++++++++.++.++ +..+.-...|..-+++..+++..|+...
T Consensus 5 ~~~~q~~~l~~~v~~lRed~r~SE-drsa~SRa~mhrRlDElV~Rv~~lEs~~ 56 (112)
T PF07439_consen 5 GLHQQLGTLNAEVKELREDIRRSE-DRSAASRASMHRRLDELVERVTTLESSV 56 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhHHHHHhHHHHHHHHHHHHHHH
Confidence 455666667777777776666554 1123344555555555555555544333
No 102
>KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=36.42 E-value=4.3e+02 Score=30.22 Aligned_cols=11 Identities=18% Similarity=0.259 Sum_probs=4.6
Q ss_pred HHHHHHHHHHH
Q 038630 782 KEAEEEIARIK 792 (885)
Q Consensus 782 ~~Ae~ei~~L~ 792 (885)
+.|+..|-+|.
T Consensus 190 E~aE~sM~nll 200 (366)
T KOG1118|consen 190 ELAEDSMFNLL 200 (366)
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 103
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=36.24 E-value=2.8e+02 Score=30.74 Aligned_cols=12 Identities=33% Similarity=0.312 Sum_probs=7.4
Q ss_pred cHHHHHHHHHHH
Q 038630 680 TLLHFVVQEIIR 691 (885)
Q Consensus 680 TLLhyLvq~Iir 691 (885)
.||+.|+..++.
T Consensus 134 ~ll~~il~~ivd 145 (318)
T TIGR00383 134 YLLYDIFDAIID 145 (318)
T ss_pred HHHHHHHHHHHh
Confidence 466666666653
No 104
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=36.19 E-value=4.4e+02 Score=28.76 Aligned_cols=18 Identities=22% Similarity=0.438 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHhcc
Q 038630 793 ADERMALSLVKEVTEYFH 810 (885)
Q Consensus 793 ~~~~~a~~~~kel~~YFG 810 (885)
.+++.|..++.++-.+|+
T Consensus 153 ~El~~A~~LL~~v~~~~~ 170 (264)
T PF06008_consen 153 DELKEAEDLLSRVQKWFQ 170 (264)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344455556666666664
No 105
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification]
Probab=35.74 E-value=27 Score=45.11 Aligned_cols=10 Identities=30% Similarity=0.248 Sum_probs=4.2
Q ss_pred cChhhHHHHH
Q 038630 514 LDPKKSQNIA 523 (885)
Q Consensus 514 LD~KRaqNIs 523 (885)
+|.|-+.+.+
T Consensus 392 ~d~~~s~e~s 401 (2365)
T COG5178 392 YDGKGSNEES 401 (2365)
T ss_pred ccCCCCcchh
Confidence 3444444433
No 106
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=35.54 E-value=2.4e+02 Score=24.30 Aligned_cols=19 Identities=21% Similarity=0.361 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 038630 742 DVLSSYVMKLEMGLEKVRL 760 (885)
Q Consensus 742 d~L~~dv~kLe~gl~kv~~ 760 (885)
++|+.++.+++..+..++.
T Consensus 3 ~elEn~~~~~~~~i~tvk~ 21 (55)
T PF05377_consen 3 DELENELPRIESSINTVKK 21 (55)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455555555555444443
No 107
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=35.46 E-value=2.3e+02 Score=30.46 Aligned_cols=42 Identities=7% Similarity=0.061 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHH
Q 038630 742 DVLSSYVMKLEMGLEKVRLVLQYEKPDMQGKFFHSMKMFLKEA 784 (885)
Q Consensus 742 d~L~~dv~kLe~gl~kv~~~Lq~~~~~~~d~F~e~m~~Fl~~A 784 (885)
..++.+..+|.++++..-..+... ...+-+|.+.|..+++..
T Consensus 22 ~~~e~~~~kL~k~~K~Y~~av~~m-~~~q~~~~e~l~~lY~p~ 63 (211)
T cd07588 22 NKQQASANRLQKDLKNYLNSVRAM-KQASKTLSETLKELYEPD 63 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhCCc
Confidence 334444555555444433322211 111346777777776543
No 108
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=35.27 E-value=2.3e+02 Score=27.34 Aligned_cols=69 Identities=20% Similarity=0.203 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC---CCchhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccCCC
Q 038630 742 DVLSSYVMKLEMGLEKVRLVLQYEKP---DMQGKFFHSMKMFLKEAEEEIARIKADE-RMALSLVKEVTEYFHGNA 813 (885)
Q Consensus 742 d~L~~dv~kLe~gl~kv~~~Lq~~~~---~~~d~F~e~m~~Fl~~Ae~ei~~L~~~~-~~a~~~~kel~~YFGEd~ 813 (885)
+.|..|++.|-..++ +.|+.... +.-+....+...-++++..++....... ..+....+..=+|-+++|
T Consensus 11 ~~l~~el~~L~d~lE---evL~ssg~~a~~e~~~lR~r~~~~Lk~~r~rl~~~~d~v~~~sk~a~~~tD~yV~e~P 83 (104)
T COG4575 11 DQLLAELQELLDTLE---EVLKSSGSLAGDEAEELRSKAESALKEARDRLGDTGDAVVQRSKAAADATDDYVRENP 83 (104)
T ss_pred HHHHHHHHHHHHHHH---HHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCC
Confidence 455666666655443 44544331 1124677777778888888887774433 445555666667887765
No 109
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=35.03 E-value=1.2e+02 Score=26.26 Aligned_cols=20 Identities=25% Similarity=0.386 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 038630 744 LSSYVMKLEMGLEKVRLVLQ 763 (885)
Q Consensus 744 L~~dv~kLe~gl~kv~~~Lq 763 (885)
+..++.+|++.+.+++..++
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~ 21 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIE 21 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666555544
No 110
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=34.85 E-value=2.9e+02 Score=34.54 Aligned_cols=35 Identities=11% Similarity=0.181 Sum_probs=27.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038630 771 GKFFHSMKMFLKEAEEEIARIKADERMALSLVKEV 805 (885)
Q Consensus 771 d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel 805 (885)
+++...+..|-++..++++.|+....++.++|..+
T Consensus 229 ~~L~~~v~~l~~~k~qr~~kl~~l~~~~~~LWn~l 263 (660)
T KOG4302|consen 229 DRLDKMVKKLKEEKKQRLQKLQDLRTKLLELWNLL 263 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56777788888888888888888888888777644
No 111
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=34.60 E-value=2.2e+02 Score=29.88 Aligned_cols=84 Identities=11% Similarity=0.150 Sum_probs=46.4
Q ss_pred cccchhhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038630 726 LSRDLSNVKKAAGMDSDVLSSYVMKLEMGLEKVRLVLQYEKPDMQGKFFHSMKMFLKEAEEEIARIKADERMALSLVKEV 805 (885)
Q Consensus 726 l~~EL~~V~kAAkvdld~L~~dv~kLe~gl~kv~~~Lq~~~~~~~d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel 805 (885)
+..||..+.. .+.++++..++++|.+.+...++.|...+.+.. .+-.+=.+.++.....-..++++-...|.++
T Consensus 105 veaEik~L~s--~Lt~eemQe~i~~L~kev~~~~erl~~~k~g~~----~vtpedk~~v~~~y~~~~~~wrk~krmf~ei 178 (201)
T KOG4603|consen 105 VEAEIKELSS--ALTTEEMQEEIQELKKEVAGYRERLKNIKAGTN----HVTPEDKEQVYREYQKYCKEWRKRKRMFREI 178 (201)
T ss_pred HHHHHHHHHH--hcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344544443 467788888888888888777776655541111 0111112234444444445555566677777
Q ss_pred HHhccCCCcc
Q 038630 806 TEYFHGNAAK 815 (885)
Q Consensus 806 ~~YFGEd~~k 815 (885)
+.-+.|+..+
T Consensus 179 ~d~~~e~~pk 188 (201)
T KOG4603|consen 179 IDKLLEGLPK 188 (201)
T ss_pred HHHHHcCCcc
Confidence 7766666443
No 112
>PF15120 DUF4561: Domain of unknown function (DUF4561)
Probab=34.55 E-value=1.5e+02 Score=30.97 Aligned_cols=85 Identities=14% Similarity=0.227 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccCChhh
Q 038630 743 VLSSYVMKLEMGLEKVRLVLQYEKPDMQGKFFHSMKMFLKEAEEEIARIKADERMALSLVKEVTEYFHGNAAKEEAHPFR 822 (885)
Q Consensus 743 ~L~~dv~kLe~gl~kv~~~Lq~~~~~~~d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~~YFGEd~~k~e~~P~e 822 (885)
++.+.+..||..++..+++. -.|...+..-.+.|.+++.-+.. ...+.+.++.+|-+.+. -+
T Consensus 3 e~~~~L~~lE~~Yk~F~qQQ--------ftFi~ALer~re~a~~~~~pV~t-----I~QV~~y~eh~~~nstD-----rr 64 (171)
T PF15120_consen 3 EVRQQLKSLEQRYKLFQQQQ--------FTFIAALERCRENAHDRTRPVST-----IGQVQKYMEHHCNNSTD-----RR 64 (171)
T ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhchhcccCCcccccc-----HHHHHHHHHHHhccccc-----HH
Confidence 45556666666665544321 24555555555555444443322 22344444444543332 37
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh
Q 038630 823 IFMIVRDFLAILDHVCKEVGKMQ 845 (885)
Q Consensus 823 fF~il~dFl~~ldka~kE~~k~~ 845 (885)
+|.+|-+.+.+|.+.|.+++...
T Consensus 65 il~~FL~iv~dL~~l~~~~~~~~ 87 (171)
T PF15120_consen 65 ILEMFLDIVRDLSRLCQQLESLI 87 (171)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 88888888899999998888753
No 113
>PRK11637 AmiB activator; Provisional
Probab=34.29 E-value=5.7e+02 Score=29.92 Aligned_cols=23 Identities=9% Similarity=0.003 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 038630 776 SMKMFLKEAEEEIARIKADERMA 798 (885)
Q Consensus 776 ~m~~Fl~~Ae~ei~~L~~~~~~a 798 (885)
.+..=+...+.+++..++.+...
T Consensus 107 ~l~~eI~~~q~~l~~~~~~l~~r 129 (428)
T PRK11637 107 ELNASIAKLEQQQAAQERLLAAQ 129 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556666666666555443
No 114
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=34.00 E-value=52 Score=33.50 Aligned_cols=27 Identities=11% Similarity=0.053 Sum_probs=15.4
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHhhhh
Q 038630 116 KKVAIAISVGIVTLGMLSALAFFLYRH 142 (885)
Q Consensus 116 ~k~~iai~~~~~~~~~~~~~~~f~~~~ 142 (885)
+|+.|.|.++++.+++.++.++|++.+
T Consensus 16 kkl~ii~l~~l~l~~~g~gg~~~~~~~ 42 (162)
T PRK07021 16 RKLWLIILILLLLAAAAGAGYSWWLSK 42 (162)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 446665555555555555556666554
No 115
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=33.93 E-value=4.3e+02 Score=29.17 Aligned_cols=42 Identities=26% Similarity=0.326 Sum_probs=21.6
Q ss_pred hcccccchhhhhhhc-CCC--HHHHHHHHHHHHHHHHHHHHHHHh
Q 038630 723 VSGLSRDLSNVKKAA-GMD--SDVLSSYVMKLEMGLEKVRLVLQY 764 (885)
Q Consensus 723 V~~l~~EL~~V~kAA-kvd--ld~L~~dv~kLe~gl~kv~~~Lq~ 764 (885)
+..|++|...|+... ++| ++-|....++|+.-|..++..+..
T Consensus 115 I~~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~L~~lE~k~~~ 159 (254)
T KOG2196|consen 115 ISGLYNEVVKVKLDQKRLDQELEFILSQQQELEDLLDPLETKLEL 159 (254)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455666665555332 232 344555555666666655555544
No 116
>TIGR02131 phaP_Bmeg polyhydroxyalkanoic acid inclusion protein PhaP. This model describes a protein found in polyhydroxyalkanoic acid (PHA) gene regions and incorporated into PHA inclusions in Bacillus cereus and Bacillus megaterium. The role of the protein may include amino acid storage (see McCool,G.J. and Cannon,M.C, 1999).
Probab=33.90 E-value=4.5e+02 Score=26.68 Aligned_cols=43 Identities=23% Similarity=0.175 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhccCCCccccCChhhhHHHHHHHHHHHHHHHHHHHH
Q 038630 798 ALSLVKEVTEYFHGNAAKEEAHPFRIFMIVRDFLAILDHVCKEVGK 843 (885)
Q Consensus 798 a~~~~kel~~YFGEd~~k~e~~P~efF~il~dFl~~ldka~kE~~k 843 (885)
+...|.+++.-|-|...+ ..+++=..+..|+..|+.-.+|+.+
T Consensus 119 t~~QfeettkqfiEqqq~---qReE~Q~qld~fleefKS~Q~e~ak 161 (165)
T TIGR02131 119 AQEQFEETTKQFIEEQKK---QREEAQHQLDAFLEEFKSKQKEFAK 161 (165)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555554333 2345556666666666666665554
No 117
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=33.55 E-value=3.7e+02 Score=28.72 Aligned_cols=42 Identities=17% Similarity=0.079 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC----C--CCchhhHHHHHHHHH
Q 038630 741 SDVLSSYVMKLEMGLEKVRLVLQYEK----P--DMQGKFFHSMKMFLK 782 (885)
Q Consensus 741 ld~L~~dv~kLe~gl~kv~~~Lq~~~----~--~~~d~F~e~m~~Fl~ 782 (885)
++.++.++.+|+..|+++.+.....- . ..+..|...|..|-.
T Consensus 4 i~~~E~~~~~le~~l~kl~K~~k~~~~agk~~~~a~~~F~~~L~~f~~ 51 (200)
T cd07639 4 IEEVEAEVSELETRLEKLVKLGSGMLEGGRHYCAASRAFVDGLCDLAH 51 (200)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555566666665555543322111 0 012356666666644
No 118
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=33.38 E-value=3.5e+02 Score=24.05 Aligned_cols=62 Identities=16% Similarity=0.248 Sum_probs=39.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038630 738 GMDSDVLSSYVMKLEMGLEKVRLVLQYEKPDMQGKFFHSMKMFLKEAEEEIARIKADERMALSLVKEVTE 807 (885)
Q Consensus 738 kvdld~L~~dv~kLe~gl~kv~~~Lq~~~~~~~d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~~ 807 (885)
..++++|..-..+|...+.....+|+. ...+....|+..+ ++|..|+.....+...+.++..
T Consensus 18 ~~s~~~i~~~~~~L~~~i~~~~~eLr~-------~V~~nY~~fI~as-~~I~~m~~~~~~l~~~l~~l~~ 79 (87)
T PF08700_consen 18 NSSIKEIRQLENKLRQEIEEKDEELRK-------LVYENYRDFIEAS-DEISSMENDLSELRNLLSELQQ 79 (87)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777777777755 3456777777654 4466676666655555555443
No 119
>PF09716 ETRAMP: Malarial early transcribed membrane protein (ETRAMP); InterPro: IPR006389 These sequences represent a family of proteins from the malaria parasite Plasmodium falciparum, several of which have been shown to be expressed specifically in the ring stage as well as the rodent parasite Plasmodium yoelii []. A homologue from Plasmodium chabaudi was localized to the parasitophorous vacuole membrane []. Members have an initial hydrophobic, Phe/Tyr-rich stretch long enough to span the membrane, a highly charged region rich in Lys, a second putative transmembrane region, and a second highly charged, low complexity sequence region. Some members have up to 100 residues of additional C-terminal sequence. These genes have been shown to be found in the sub-telomeric regions of both Plasmodium falciparum and P. yoelii chromosomes.
Probab=33.15 E-value=55 Score=30.05 Aligned_cols=28 Identities=21% Similarity=0.333 Sum_probs=20.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhccC
Q 038630 118 VAIAISVGIVTLGMLSALAFFLYRHRVK 145 (885)
Q Consensus 118 ~~iai~~~~~~~~~~~~~~~f~~~~r~~ 145 (885)
++|+..++.+|+++.+++++-+|.+|.+
T Consensus 56 iiiS~i~s~lalli~~~~G~g~y~~~k~ 83 (84)
T PF09716_consen 56 IIISTIASGLALLIATALGYGYYKKKKK 83 (84)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 7777666677777777888888877653
No 120
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=33.09 E-value=1.1e+02 Score=32.51 Aligned_cols=44 Identities=14% Similarity=-0.034 Sum_probs=19.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHH
Q 038630 740 DSDVLSSYVMKLEMGLEKVRLVLQYEKPDMQGKFFHSMKMFLKEA 784 (885)
Q Consensus 740 dld~L~~dv~kLe~gl~kv~~~Lq~~~~~~~d~F~e~m~~Fl~~A 784 (885)
+++.|..-+.+|.++++.+.+..+.. ...+..|...+..|-..+
T Consensus 10 ~~~~l~~~l~kl~K~~~~~~~ag~~~-~~a~~~F~~~L~~~~~~~ 53 (200)
T cd07603 10 DVSELETRLEKLLKLCNGMVDSGKTY-VNANSLFVNSLNDLSDYF 53 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhccc
Confidence 44444555555554444433221110 011235666666665544
No 121
>PRK04863 mukB cell division protein MukB; Provisional
Probab=33.07 E-value=6.9e+02 Score=34.45 Aligned_cols=37 Identities=5% Similarity=0.109 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhhc
Q 038630 610 AEVKYLRKSYQTLEAASEELKNSRLFLKLLEAVLKTG 646 (885)
Q Consensus 610 ~~v~~l~~~l~~l~~A~~eLr~S~~L~~lL~~VLaiG 646 (885)
..+++++..|..+....++|+.+..++.+++.++..+
T Consensus 230 ~~i~~m~~~l~~~r~t~~~~~~tq~drdlFk~lI~~~ 266 (1486)
T PRK04863 230 KAFQDMEAALRENRMTLEAIRVTQSDRDLFKHLITES 266 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHhhhh
Confidence 3478899999999999999999999999999875543
No 122
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=32.96 E-value=3.5e+02 Score=27.76 Aligned_cols=75 Identities=17% Similarity=0.136 Sum_probs=46.5
Q ss_pred cccccchhhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038630 724 SGLSRDLSNVKKAAGMDSDVLSSYVMKLEMGLEKVRLVLQYEKPDMQGKFFHSMKMFLKEAEEEIARIKADERMA 798 (885)
Q Consensus 724 ~~l~~EL~~V~kAAkvdld~L~~dv~kLe~gl~kv~~~Lq~~~~~~~d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a 798 (885)
..|..+...|.+-+.-=.+.|...+..|-...+++.+.|.....+..++....|+..++.+-.....+...+..+
T Consensus 77 ~~L~k~~Pev~~qa~~l~e~lQ~~vq~l~~E~qk~~k~v~~~~~~~~e~l~~~~K~~~D~~~k~~~~~~~~l~~a 151 (155)
T PF07464_consen 77 EKLRKANPEVEKQANELQEKLQSAVQSLVQESQKLAKEVSENSEGANEKLQPAIKQAYDDAVKAAQKVQKQLHEA 151 (155)
T ss_dssp HGGGG-SHHHHHT-SSSHHHHHHHHHHHHHHHHHHHHHHHS---SS-GGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555655554445677777778877777877777666444456777777777777777777776665543
No 123
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=32.59 E-value=14 Score=36.32 Aligned_cols=18 Identities=28% Similarity=0.316 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhccCCC
Q 038630 130 GMLSALAFFLYRHRVKHP 147 (885)
Q Consensus 130 ~~~~~~~~f~~~~r~~~~ 147 (885)
+|++++++|+|.||.+|+
T Consensus 90 lVl~llsg~lv~rrcrrr 107 (129)
T PF12191_consen 90 LVLALLSGFLVWRRCRRR 107 (129)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHhhhhcc
Confidence 446666666664444433
No 124
>PF08580 KAR9: Yeast cortical protein KAR9; InterPro: IPR013889 The KAR9 protein in Saccharomyces cerevisiae (Baker's yeast) is a cytoskeletal protein required for karyogamy, correct positioning of the mitotic spindle and for orientation of cytoplasmic microtubules []. KAR9 localises at the shmoo tip in mating cells and at the tip of the growing bud in anaphase [].
Probab=32.30 E-value=5.3e+02 Score=32.55 Aligned_cols=30 Identities=13% Similarity=0.243 Sum_probs=22.3
Q ss_pred hhH-HHHHHHHHHHHHHHHHHHHHhhhhhcc
Q 038630 822 RIF-MIVRDFLAILDHVCKEVGKMQERTMVG 851 (885)
Q Consensus 822 efF-~il~dFl~~ldka~kE~~k~~er~~v~ 851 (885)
|++ .++.+....++++.+.+-+|+|++.-+
T Consensus 126 EL~~~vlg~l~~EIe~~~~~vfemeE~R~~S 156 (683)
T PF08580_consen 126 ELWNDVLGDLDNEIEECIRLVFEMEEKRHSS 156 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 444 467778888888888888888876543
No 125
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=32.27 E-value=3.9e+02 Score=26.44 Aligned_cols=45 Identities=24% Similarity=0.212 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCccccCChhhhHHHHHHHHHHHHHHHHHHHHHh
Q 038630 790 RIKADERMALSLVKEVTEYFHGNAAKEEAHPFRIFMIVRDFLAILDHVCKEVGKMQ 845 (885)
Q Consensus 790 ~L~~~~~~a~~~~kel~~YFGEd~~k~e~~P~efF~il~dFl~~ldka~kE~~k~~ 845 (885)
.|+....++.+.-..+++=|.+.. ..|.+|+..|....+.+..-.
T Consensus 100 ~L~~~~~e~eeeSe~lae~fl~g~-----------~d~~~Fl~~f~~~R~~yH~R~ 144 (150)
T PF07200_consen 100 RLQAAASEAEEESEELAEEFLDGE-----------IDVDDFLKQFKEKRKLYHLRR 144 (150)
T ss_dssp HHHHHHHHHHHHHHHHC-S-SSSH-----------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCC-----------CCHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555554321 237899999988888776543
No 126
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=32.25 E-value=3.1e+02 Score=34.63 Aligned_cols=161 Identities=18% Similarity=0.161 Sum_probs=97.5
Q ss_pred ccccChhhHHHHHHHhhhcCC-------CHHHHHHHHHcC---------C--CCCCCHHHHHHHHhcCCC----------
Q 038630 511 NRVLDPKKSQNIAILLRALNV-------TRDEVSEALLDG---------N--PESLGAELLETLVKMAPT---------- 562 (885)
Q Consensus 511 isVLD~KRaqNIsI~L~klkl-------s~eeI~~AIl~~---------D--~~~L~~E~Le~Llk~lPT---------- 562 (885)
+.+|+.++-..+-=.-..++| +.+|+.+|+... | +-.++.+..+.|.+++|.
T Consensus 141 ~~~L~~~~l~~l~~~a~~lGme~LvEvh~~~el~~a~~~ga~iiGINnRdL~tf~vd~~~t~~L~~~ip~~~~~VsESGI 220 (695)
T PRK13802 141 VAALDDAQLKHLLDLAHELGMTVLVETHTREEIERAIAAGAKVIGINARNLKDLKVDVNKYNELAADLPDDVIKVAESGV 220 (695)
T ss_pred HhhcCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCEEEEeCCCCccceeCHHHHHHHHhhCCCCcEEEEcCCC
Confidence 357777666666655666765 568888887522 3 334578888999999985
Q ss_pred --HHHHHHHHhhhcCc-------CCCChHHHHHHHHhCcccHH-------HHHHHHHHHHHhHHHH--HHHHHHHHHHHH
Q 038630 563 --KEEEIKLREYKGDI-------LKLGSAERFLKAVLDIPFAF-------KRVEAMLYRANFDAEV--KYLRKSYQTLEA 624 (885)
Q Consensus 563 --~EEi~~Lk~~~gD~-------~~L~~aEqFl~~L~~IP~l~-------~RL~allfk~~F~~~v--~~l~~~l~~l~~ 624 (885)
.+|+..++++--|. .+=.+..+.+.+|....... .|-.-.-|-..|..++ +.|.+.|+.|+.
T Consensus 221 ~~~~d~~~l~~~G~davLIGeslm~~~dp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~gg~~~pe~l~~~~~~l~~ 300 (695)
T PRK13802 221 FGAVEVEDYARAGADAVLVGEGVATADDHELAVERLVKAGARVKASETTPLSEHQGPYWGQFGGRYVPEALITALDELER 300 (695)
T ss_pred CCHHHHHHHHHCCCCEEEECHHhhCCCCHHHHHHHHHhccccccccCCCCcccCCCCCcCCcCCEeCCHHHHHHHHHHHH
Confidence 47777777653221 22223344444443221000 0000000122444444 788899999999
Q ss_pred HHHHHHhcHHHHHHHHHHHhhccccccCCC-----C---------C--ceeeeeccchhcccccc
Q 038630 625 ASEELKNSRLFLKLLEAVLKTGNRMNVGTN-----R---------G--DAKAFKLDTLLKLVDIK 673 (885)
Q Consensus 625 A~~eLr~S~~L~~lL~~VLaiGN~LN~gt~-----r---------G--~A~GFkLdSL~KL~dtK 673 (885)
|.+++++...|.+=|..+|. ||+...|. + | .-.=+|++.|+-..-.|
T Consensus 301 ~~~~~~~~~~f~~e~~~~~~--~~iGrpTPL~~~~~Ls~~l~~~~G~g~~IylK~E~lNpTGS~K 363 (695)
T PRK13802 301 VYTQAKADPEFHKELATLNQ--RYVGRPSPLTEAPRFAERVKEKTGLDARVFLKREDLNHTGAHK 363 (695)
T ss_pred HHHHHhcCHHHHHHHHHHHH--hcCCCCCceeEchhhhhhhHhhcCCCceEEEEEccCCCcCCcH
Confidence 99999999999999998875 77765552 1 1 12335667766665555
No 127
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=32.09 E-value=30 Score=35.13 Aligned_cols=40 Identities=23% Similarity=0.296 Sum_probs=26.2
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHhh-hhccCCC-CCccccc
Q 038630 115 AKKVAIAISVGIVTLGMLSALAFFLY-RHRVKHP-GESQKLV 154 (885)
Q Consensus 115 ~~k~~iai~~~~~~~~~~~~~~~f~~-~~r~~~~-~~~~~~~ 154 (885)
+..++|||.+.+..|+||.+++++++ .||-..+ .-.|.+.
T Consensus 7 n~sv~i~igi~Ll~lLl~cgiGcvwhwkhr~~~~ftLPkflq 48 (158)
T PF11770_consen 7 NTSVAISIGISLLLLLLLCGIGCVWHWKHRDSTRFTLPKFLQ 48 (158)
T ss_pred CchHHHHHHHHHHHHHHHHhcceEEEeeccCccccchHHHHH
Confidence 45688888888888888878877665 5554332 2345554
No 128
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=31.58 E-value=5.9e+02 Score=26.16 Aligned_cols=43 Identities=9% Similarity=0.043 Sum_probs=19.7
Q ss_pred HHHHHHHHhccCCCccccCChhhhH-HHHHHHHHHHHHHHHHHH
Q 038630 800 SLVKEVTEYFHGNAAKEEAHPFRIF-MIVRDFLAILDHVCKEVG 842 (885)
Q Consensus 800 ~~~kel~~YFGEd~~k~e~~P~efF-~il~dFl~~ldka~kE~~ 842 (885)
.-...+.+-++++..........+| .++.+|...+.+..++++
T Consensus 106 ~E~qk~~k~v~~~~~~~~e~l~~~~K~~~D~~~k~~~~~~~~l~ 149 (155)
T PF07464_consen 106 QESQKLAKEVSENSEGANEKLQPAIKQAYDDAVKAAQKVQKQLH 149 (155)
T ss_dssp HHHHHHHHHHHS---SS-GGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555554333222334555 455566666666555554
No 129
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=31.56 E-value=2.3e+02 Score=33.49 Aligned_cols=36 Identities=17% Similarity=0.248 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038630 772 KFFHSMKMFLKEAEEEIARIKADERMALSLVKEVTE 807 (885)
Q Consensus 772 ~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~~ 807 (885)
+..+.+.+=+..|+.++..|++.+....-.|+.+|+
T Consensus 250 ~qLe~v~kdi~~a~keL~~m~~~i~~eKP~WkKiWE 285 (426)
T smart00806 250 KQLETVQKELETARKELKKMEEYIDIEKPIWKKIWE 285 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHH
Confidence 445566666666666676666666666666666665
No 130
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=31.55 E-value=1e+03 Score=29.79 Aligned_cols=34 Identities=9% Similarity=0.212 Sum_probs=19.3
Q ss_pred HHHHHHHHHhccCCCccccCChhhhHHHHHHHHHHHHHHH
Q 038630 799 LSLVKEVTEYFHGNAAKEEAHPFRIFMIVRDFLAILDHVC 838 (885)
Q Consensus 799 ~~~~kel~~YFGEd~~k~e~~P~efF~il~dFl~~ldka~ 838 (885)
+..|..|+.|.- ++++..|-.+++.+...+.+.+
T Consensus 211 L~~ys~Li~~lK------~~d~~~y~~L~~~Y~~~~~~ly 244 (701)
T PF09763_consen 211 LLPYSGLILWLK------EVDPESYQALIKAYNSSMSKLY 244 (701)
T ss_pred HHhHHHHHHHHH------HcCHHHHHHHHHHHHHHHHHHH
Confidence 345666665542 2455566666666666665555
No 131
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=31.45 E-value=1.3e+03 Score=30.14 Aligned_cols=252 Identities=14% Similarity=0.213 Sum_probs=121.8
Q ss_pred CCHHHHHHHHhcCCCHHHHHH-------HHhhhcC-----cCCCChHHHHHHHHh----CcccHHHHHHHHHHHHHhHHH
Q 038630 548 LGAELLETLVKMAPTKEEEIK-------LREYKGD-----ILKLGSAERFLKAVL----DIPFAFKRVEAMLYRANFDAE 611 (885)
Q Consensus 548 L~~E~Le~Llk~lPT~EEi~~-------Lk~~~gD-----~~~L~~aEqFl~~L~----~IP~l~~RL~allfk~~F~~~ 611 (885)
-+.+.|.....|+=.-+..++ -++|.+. .....--|.|.-.|. +.+.-++|.+++.-..+|.-+
T Consensus 1078 sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~q 1157 (1416)
T KOG3617|consen 1078 SDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQ 1157 (1416)
T ss_pred CCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHh
Confidence 355667766666644333222 1334331 133445566654442 356677898888888877766
Q ss_pred HHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhhcc------ccccCCCCCceeeeeccchhcccccccCCCCccHHHHH
Q 038630 612 VKYLRKSYQTLEAASEELKNSRLFLKLLEAVLKTGN------RMNVGTNRGDAKAFKLDTLLKLVDIKGTDGKTTLLHFV 685 (885)
Q Consensus 612 v~~l~~~l~~l~~A~~eLr~S~~L~~lL~~VLaiGN------~LN~gt~rG~A~GFkLdSL~KL~dtKs~D~k~TLLhyL 685 (885)
-.+.-.....+..|-+.| +-|+.+|+-|| |.|.. ++...+-..-..|.-|. - .|+-.++-|.+
T Consensus 1158 QG~Yh~AtKKfTQAGdKl-------~AMraLLKSGdt~KI~FFAn~s-RqkEiYImAANyLQtlD-W--q~~pq~mK~I~ 1226 (1416)
T KOG3617|consen 1158 QGAYHAATKKFTQAGDKL-------SAMRALLKSGDTQKIRFFANTS-RQKEIYIMAANYLQTLD-W--QDNPQTMKDIE 1226 (1416)
T ss_pred ccchHHHHHHHhhhhhHH-------HHHHHHHhcCCcceEEEEeecc-ccceeeeehhhhhhhcc-c--ccChHHHhhhH
Confidence 555555556666666555 36777888887 34433 22334433333343331 1 12222222222
Q ss_pred HHHHHHHhCCCCCCccccccccCccchHHHHhhchhhhcccccchhhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHH---
Q 038630 686 VQEIIRAEGAGTKSTEVNVESKNSMREDEFKKQGLEVVSGLSRDLSNVKKAAGMDSDVLSSYVMKLEMGLEKVRLVL--- 762 (885)
Q Consensus 686 vq~Iir~e~~~L~~~n~~~~~~~~~~~E~~~k~gl~~V~~l~~EL~~V~kAAkvdld~L~~dv~kLe~gl~kv~~~L--- 762 (885)
....+. ..|..+.+|++-. |.|..+++ +.+.+.+..+++..
T Consensus 1227 -tFYTKg-------------------------qafd~LanFY~~c------AqiEiee~----q~ydKa~gAl~eA~kCl 1270 (1416)
T KOG3617|consen 1227 -TFYTKG-------------------------QAFDHLANFYKSC------AQIEIEEL----QTYDKAMGALEEAAKCL 1270 (1416)
T ss_pred -hhhhcc-------------------------hhHHHHHHHHHHH------HHhhHHHH----hhhhHHhHHHHHHHHHH
Confidence 111110 1123345555332 33443333 22333333333221
Q ss_pred -HhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccc-cCChhhhHHHH-HHHH--HHHHHH
Q 038630 763 -QYEKPDMQGKFFHSMKMFLKEAEEEIARIKADERMALSLVKEVTEYFHGNAAKE-EAHPFRIFMIV-RDFL--AILDHV 837 (885)
Q Consensus 763 -q~~~~~~~d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~~YFGEd~~k~-e~~P~efF~il-~dFl--~~ldka 837 (885)
+...+.....-.+.++.=+......+..++..-+......+++....-| +.-. ...--++|..+ .+.+ +.|..|
T Consensus 1271 ~ka~~k~~~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc~~llee-p~ld~~Ir~~~~~a~lie~~v~~k~y~~A 1349 (1416)
T KOG3617|consen 1271 LKAEQKNMSTTGLDALQEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLEE-PILDDIIRCTRLFALLIEDHVSRKNYKPA 1349 (1416)
T ss_pred HHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhC-cCCCCcchhHHHHHHHHHHHHhhhhccHH
Confidence 1111112234455666666667777777776666666677777666533 2221 12234666543 3332 445555
Q ss_pred HHHHHHHhhh
Q 038630 838 CKEVGKMQER 847 (885)
Q Consensus 838 ~kE~~k~~er 847 (885)
.+-++.++.|
T Consensus 1350 yRal~el~~k 1359 (1416)
T KOG3617|consen 1350 YRALTELQKK 1359 (1416)
T ss_pred HHHHHHHhhc
Confidence 5555555544
No 132
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=31.42 E-value=44 Score=30.03 Aligned_cols=8 Identities=13% Similarity=0.189 Sum_probs=2.6
Q ss_pred HHhhhhcc
Q 038630 137 FFLYRHRV 144 (885)
Q Consensus 137 ~f~~~~r~ 144 (885)
++++++|.
T Consensus 20 ~~~~~rr~ 27 (75)
T PF14575_consen 20 VIVCFRRC 27 (75)
T ss_dssp HHCCCTT-
T ss_pred EEEEEeeE
Confidence 33333333
No 133
>PF10265 DUF2217: Uncharacterized conserved protein (DUF2217); InterPro: IPR019392 This is a family of conserved proteins varying in length from 500-600 residues. Their function is not known.
Probab=31.25 E-value=69 Score=38.61 Aligned_cols=22 Identities=9% Similarity=-0.032 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHhcHHHH
Q 038630 615 LRKSYQTLEAASEELKNSRLFL 636 (885)
Q Consensus 615 l~~~l~~l~~A~~eLr~S~~L~ 636 (885)
...+|.+|..|++.|.+...-+
T Consensus 295 fLAKLHCvRqAf~~~l~d~~~r 316 (514)
T PF10265_consen 295 FLAKLHCVRQAFQVLLQDESNR 316 (514)
T ss_pred HHHHHHHHHHHHHHHhcCchhh
Confidence 4467788888888887665444
No 134
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=31.11 E-value=5.8e+02 Score=25.98 Aligned_cols=68 Identities=15% Similarity=0.196 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccCChhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 038630 774 FHSMKMFLKEAEEEIARIKADERMALSLVKEVTEYFHGNAAKEEAHPFRIFMIVRDFLAILDHVCKEVGKMQER 847 (885)
Q Consensus 774 ~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~~YFGEd~~k~e~~P~efF~il~dFl~~ldka~kE~~k~~er 847 (885)
.+.+..=+..++.++..++..+..+....+.=+..|...- -.+|-.+|.+|+...-..++++-.+++.
T Consensus 147 i~~l~~~i~~~e~~~~~~~~~~~~i~~~~~~El~~f~~~~------~~dlk~~l~~~~~~qi~~~~~~~~~W~~ 214 (218)
T cd07596 147 VEELEEELEEAESALEEARKRYEEISERLKEELKRFHEER------ARDLKAALKEFARLQVQYAEKIAEAWES 214 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555566677777777777666666655555665321 1356677888888777777777766553
No 135
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=31.04 E-value=5.1e+02 Score=25.27 Aligned_cols=31 Identities=10% Similarity=0.103 Sum_probs=21.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038630 771 GKFFHSMKMFLKEAEEEIARIKADERMALSL 801 (885)
Q Consensus 771 d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~ 801 (885)
......|...++.+...+..++..++.+...
T Consensus 40 ~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~ 70 (151)
T cd00179 40 PELKQELESLVQEIKKLAKEIKGKLKELEES 70 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777777777777777766665543
No 136
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=30.91 E-value=6.8e+02 Score=26.69 Aligned_cols=41 Identities=12% Similarity=0.141 Sum_probs=27.4
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhc-----HHHHHHHHHHHhhc
Q 038630 606 ANFDAEVKYLRKSYQTLEAASEELKNS-----RLFLKLLEAVLKTG 646 (885)
Q Consensus 606 ~~F~~~v~~l~~~l~~l~~A~~eLr~S-----~~L~~lL~~VLaiG 646 (885)
..+++.+++|+..++.+.+.|..+.++ ..-+.+...+..+|
T Consensus 4 ~~~E~~~~~l~~~~~Kl~K~~~~~~~a~~~~~~a~~~Fa~~L~~f~ 49 (202)
T cd07606 4 QELEGSADELRDRSLKLYKGCRKYRDALGEAYDGDSAFAESLEEFG 49 (202)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 457788888888888888888776653 23334444555555
No 137
>PTZ00208 65 kDa invariant surface glycoprotein; Provisional
Probab=30.77 E-value=38 Score=39.39 Aligned_cols=18 Identities=28% Similarity=0.613 Sum_probs=9.3
Q ss_pred HHHHHHHhh-hhccCCCCC
Q 038630 132 LSALAFFLY-RHRVKHPGE 149 (885)
Q Consensus 132 ~~~~~~f~~-~~r~~~~~~ 149 (885)
+..++||++ ||||.+..|
T Consensus 401 ~~~~~~~~~v~rrr~~~~d 419 (436)
T PTZ00208 401 IIAVAFFIMVKRRRNSSED 419 (436)
T ss_pred HHHHHhheeeeeccCCchh
Confidence 445556666 444444433
No 138
>PF15155 MRFAP1: MORF4 family-associated protein1
Probab=30.77 E-value=3.5e+02 Score=26.26 Aligned_cols=89 Identities=16% Similarity=0.164 Sum_probs=44.2
Q ss_pred HHHhhchhhhcccccchhhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcC-------CCCchhhHHHHHHHHHHHHH
Q 038630 714 EFKKQGLEVVSGLSRDLSNVKKAAGMDSDVLSSYVMKLEMGLEKVRLVLQYEK-------PDMQGKFFHSMKMFLKEAEE 786 (885)
Q Consensus 714 ~~~k~gl~~V~~l~~EL~~V~kAAkvdld~L~~dv~kLe~gl~kv~~~Lq~~~-------~~~~d~F~e~m~~Fl~~Ae~ 786 (885)
+|..--+|++.....|+..+.+--.--.=--...+-++.+-|..|+.+++.++ +...+...+....-.+.|++
T Consensus 23 dfeqfllPvi~e~RediAsL~Re~~RA~lR~R~KL~EmdnmLiqIKtqVEAseesAlnhlq~p~~gae~r~a~~cekaee 102 (127)
T PF15155_consen 23 DFEQFLLPVIHEMREDIASLTREHGRAYLRNRSKLWEMDNMLIQIKTQVEASEESALNHLQSPGAGAEERVARRCEKAEE 102 (127)
T ss_pred hhhhhccchHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHhccCCCCcchhhHHHHHHHHHHH
Confidence 44444456666666777666542211111113445566666666776666554 12233444455555566666
Q ss_pred HHHHHHHHHHHHHHHH
Q 038630 787 EIARIKADERMALSLV 802 (885)
Q Consensus 787 ei~~L~~~~~~a~~~~ 802 (885)
+-..+........+++
T Consensus 103 KA~E~AkMaemlVeLv 118 (127)
T PF15155_consen 103 KAAEAAKMAEMLVELV 118 (127)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5554444333333333
No 139
>PF12825 DUF3818: Domain of unknown function in PX-proteins (DUF3818); InterPro: IPR024554 The function of this domain is not known, but it is almost always found C-terminal to a PX-domain (IPR001683 from INTERPRO).
Probab=30.57 E-value=7.7e+02 Score=28.43 Aligned_cols=42 Identities=12% Similarity=0.295 Sum_probs=25.4
Q ss_pred HHHHHHHhhccccccCCCCCceeeeeccchhcccccccCCCCccHHHHHHHHHH
Q 038630 637 KLLEAVLKTGNRMNVGTNRGDAKAFKLDTLLKLVDIKGTDGKTTLLHFVVQEII 690 (885)
Q Consensus 637 ~lL~~VLaiGN~LN~gt~rG~A~GFkLdSL~KL~dtKs~D~k~TLLhyLvq~Ii 690 (885)
.+++.+|.+||-+-- +..+.+|--.+..+ +.+||+-+...++
T Consensus 64 ~~ikq~Lri~Np~~m-----------~~gm~dLfLaqpfG-~~sLlQrifs~~L 105 (341)
T PF12825_consen 64 TVIKQILRITNPATM-----------MKGMMDLFLAQPFG-GRSLLQRIFSMVL 105 (341)
T ss_pred HHHHHHHhcCCHHHH-----------HHHHHHHHccCCCC-cCcHHHHHHHHHH
Confidence 356778888885432 12234444455444 6799999986554
No 140
>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra
Probab=30.50 E-value=1.3e+02 Score=32.64 Aligned_cols=169 Identities=18% Similarity=0.173 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHH-----------------------hcHHHH---HHHH-HHHhhccccccCCCCCce
Q 038630 606 ANFDAEVKYLRKSYQTLEAASEELK-----------------------NSRLFL---KLLE-AVLKTGNRMNVGTNRGDA 658 (885)
Q Consensus 606 ~~F~~~v~~l~~~l~~l~~A~~eLr-----------------------~S~~L~---~lL~-~VLaiGN~LN~gt~rG~A 658 (885)
.+++.+++..+..++.|.....++. .+..+. ..|+ +.+..|+-|..++.-|.|
T Consensus 10 ~~le~~~d~~~~~~~~l~~~~~~~lqpNP~~r~~~~~~~~~~K~~g~~~~~~~p~~~~~Lg~~M~~~g~elg~~S~~G~a 89 (223)
T cd07592 10 LEMERKTDATSKLVEDLIPKTKEYLQPNPAARAKLAMQNTYSKIRGQAKSTKYPQPEGLLGEVMLKYGRELGEDSNFGQA 89 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCchHhHHHHHHHHHHHHhccCcccCCCCcccHHHHHHHHHHhhcCCCChHHHH
Q ss_pred eeeeccchhccccccc---CCCCccHHHHHHHHHHHHhCCCCCCccccccccCccchHHHHhhchhhhcccccchhhhhh
Q 038630 659 KAFKLDTLLKLVDIKG---TDGKTTLLHFVVQEIIRAEGAGTKSTEVNVESKNSMREDEFKKQGLEVVSGLSRDLSNVKK 735 (885)
Q Consensus 659 ~GFkLdSL~KL~dtKs---~D~k~TLLhyLvq~Iir~e~~~L~~~n~~~~~~~~~~~E~~~k~gl~~V~~l~~EL~~V~k 735 (885)
--=-=+...||++.+. ..-+.++|+-|...+... +-.+...-..|+.
T Consensus 90 L~~~g~a~~kIa~~~~~~d~~v~~~fl~pL~~~l~~d------------------------------ik~i~k~RKkLe~ 139 (223)
T cd07592 90 LVEVGEALKQLAEVKDSLDDNVKQNFLDPLQQLQDKD------------------------------LKEINHHRKKLEG 139 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------------HHHHHHHHHHHHH
Q ss_pred hcCCCHHHHHHHHHHH-HHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 038630 736 AAGMDSDVLSSYVMKL-EMGLEKVRLVLQYEKPDMQGKFFHSMKMFLKEAEEEIARIKADERMALSLVKEVTEYF 809 (885)
Q Consensus 736 AAkvdld~L~~dv~kL-e~gl~kv~~~Lq~~~~~~~d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~~YF 809 (885)
.++|+|.....+++- +..++..+..+..+. +.....|..|++.=.+.+..|.+..+.-.+-|+++.+++
T Consensus 140 -rRLdyD~~k~k~~k~~eeEl~~Ae~kfe~s~----E~a~~~M~~il~~e~e~~~~L~~lveAQl~Yh~~~~e~L 209 (223)
T cd07592 140 -RRLDYDYKKRKQGKGPDEELKQAEEKFEESK----ELAENSMFNLLENDVEQVSQLSALVEAQLDYHRQSAEIL 209 (223)
T ss_pred -HHHHHHHHHHhcccCchHHHHHHHHHHHHHH----HHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHH
No 141
>KOG2460 consensus Signal recognition particle, subunit Srp68 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.24 E-value=1.1e+03 Score=28.95 Aligned_cols=65 Identities=15% Similarity=0.131 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCh-hhhH-HHHHHHHHHHHHHHHHHHH
Q 038630 778 KMFLKEAEEEIARIKADERMALSLVKEVTEYFHGNAAKEEAHP-FRIF-MIVRDFLAILDHVCKEVGK 843 (885)
Q Consensus 778 ~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~~YFGEd~~k~e~~P-~efF-~il~dFl~~ldka~kE~~k 843 (885)
+.|.-.+-...=..+..+.+|..+|.+...|.-+-..+.+ .+ +..| -.+.+.+..++++..+.++
T Consensus 421 kafRC~~iA~sY~a~~K~~EAlALy~Ra~sylqe~~~~l~-s~~e~l~~~~~~eli~el~k~k~s~~a 487 (593)
T KOG2460|consen 421 KAFRCFYIAVSYQAKKKYSEALALYVRAYSYLQEVNSELE-SFKESLLPLLLLELISELQKRKESLGA 487 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-chhhcccchHHHHHHHHHHHHHHhhhh
Confidence 3344333333334555677788888888888754322211 11 1122 4555666666666655554
No 142
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=30.07 E-value=2.3e+02 Score=30.33 Aligned_cols=69 Identities=14% Similarity=0.227 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcc-------ccCChhhhHH-HHHHHHHHHHHHHHHHH
Q 038630 774 FHSMKMFLKEAEEEIARIKADERMALSLVKEVTEYFHGNAAK-------EEAHPFRIFM-IVRDFLAILDHVCKEVG 842 (885)
Q Consensus 774 ~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~~YFGEd~~k-------~e~~P~efF~-il~dFl~~ldka~kE~~ 842 (885)
.+++..=++.+...+...++++..+.+.+..+...|-.+-.. .|.....||. .|+.|...+...|-...
T Consensus 152 ~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~~~~~~~~~~~~~~~~Q~lEe~Ri~~lk~~l~~~a~~~s~~cv~~d 228 (236)
T cd07651 152 LEKNNAKLNKAQSSINSSRRDYQNAVKALRELNEIWNREWKAALDDFQDLEEERIQFLKSNCWTFANNISTLCVDDD 228 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 466777777788888888888887777777776665544221 1122335565 57778888777774433
No 143
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=29.53 E-value=7.1e+02 Score=26.43 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=20.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhc
Q 038630 607 NFDAEVKYLRKSYQTLEAASEELKNS 632 (885)
Q Consensus 607 ~F~~~v~~l~~~l~~l~~A~~eLr~S 632 (885)
.-+..+++++..|+.|.+.|..+.++
T Consensus 6 ~~E~~~~~l~~~l~kl~K~~~~~~~a 31 (200)
T cd07603 6 QVEADVSELETRLEKLLKLCNGMVDS 31 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888887764
No 144
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=29.31 E-value=5.4e+02 Score=25.05 Aligned_cols=57 Identities=21% Similarity=0.176 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccCChhhhHHHHHHHHHHHHHHHHHHHHH
Q 038630 782 KEAEEEIARIKADERMALSLVKEVTEYFHGNAAKEEAHPFRIFMIVRDFLAILDHVCKEVGKM 844 (885)
Q Consensus 782 ~~Ae~ei~~L~~~~~~a~~~~kel~~YFGEd~~k~e~~P~efF~il~dFl~~ldka~kE~~k~ 844 (885)
..++.++...++.+..+...+..-+.-|.+. .-..|-..|..|+......+++..++
T Consensus 131 ~~~~~~~~~ar~~y~~~~~~~~~~l~~~~~~------~~~~~~~~L~~~~~~q~~~~~~~~~~ 187 (194)
T cd07307 131 AEAEEELQEAKEKYEELREELIEDLNKLEEK------RKELFLSLLLSFIEAQSEFFKEVLKI 187 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 4455555555555555444444444434322 11245667777887777777666654
No 145
>PF14991 MLANA: Protein melan-A; PDB: 2GTZ_F 2GT9_F 3MRO_P 2GUO_C 3MRQ_P 2GTW_C 3L6F_C 3MRP_P.
Probab=29.20 E-value=13 Score=36.11 Aligned_cols=29 Identities=28% Similarity=0.398 Sum_probs=1.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhccCCC
Q 038630 119 AIAISVGIVTLGMLSALAFFLYRHRVKHP 147 (885)
Q Consensus 119 ~iai~~~~~~~~~~~~~~~f~~~~r~~~~ 147 (885)
|.-|...++.|++|-++++++||||.--+
T Consensus 26 AaGIGiL~VILgiLLliGCWYckRRSGYk 54 (118)
T PF14991_consen 26 AAGIGILIVILGILLLIGCWYCKRRSGYK 54 (118)
T ss_dssp --SSS------------------------
T ss_pred hccceeHHHHHHHHHHHhheeeeecchhh
Confidence 33344555566667778888887776533
No 146
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=29.18 E-value=5.5e+02 Score=28.00 Aligned_cols=72 Identities=14% Similarity=0.110 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 038630 738 GMDSDVLSSYVMKLEMGLEKVRLVLQYEKPDMQGKFFHSMKMFLKEAEEEIARIKADERMALSLVKEVTEYFHG 811 (885)
Q Consensus 738 kvdld~L~~dv~kLe~gl~kv~~~Lq~~~~~~~d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~~YFGE 811 (885)
+..++.+..++..|...++.+.+.+...... .+........-+..|+.-...++.....+.....++.. |++
T Consensus 44 ~~~~~~~e~~l~~L~~d~~~L~~k~~~~~~~-~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~~l~~~~~~-l~~ 115 (264)
T PF06008_consen 44 KQQLDPLEKELESLEQDVENLQEKATKVSRK-AQQLNNNTERTLQRAQDLEQFIQNLQDNIQELIEQVES-LNE 115 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCc
Confidence 3445666666666666666665544433211 12444444444555555555555555555555555554 455
No 147
>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]
Probab=29.17 E-value=1.5e+02 Score=37.35 Aligned_cols=27 Identities=22% Similarity=0.203 Sum_probs=15.4
Q ss_pred HHHHhcHHHHHHHHHHHhhccccccCC
Q 038630 627 EELKNSRLFLKLLEAVLKTGNRMNVGT 653 (885)
Q Consensus 627 ~eLr~S~~L~~lL~~VLaiGN~LN~gt 653 (885)
.+.+.-+...++.-.+..+||.=-.|.
T Consensus 558 k~sr~lr~VleiILA~gNymns~kRg~ 584 (830)
T KOG1923|consen 558 KESRKLRPVLEIILAFGNYMNSSKRGA 584 (830)
T ss_pred HHHHHHHHHHHHHHHhhccCCCccccc
Confidence 334444445555556667777666665
No 148
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=29.05 E-value=4.5e+02 Score=28.28 Aligned_cols=22 Identities=14% Similarity=0.034 Sum_probs=11.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 038630 822 RIFMIVRDFLAILDHVCKEVGK 843 (885)
Q Consensus 822 efF~il~dFl~~ldka~kE~~k 843 (885)
.|+.+-..|...+-..+.++..
T Consensus 188 s~~~iQ~~~~~~~y~~l~~~~~ 209 (224)
T cd07591 188 AFVKIQLRFFTEGYERLAQVQR 209 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555555555555544443
No 149
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=29.03 E-value=1.1e+03 Score=28.29 Aligned_cols=39 Identities=18% Similarity=0.276 Sum_probs=23.7
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhhc
Q 038630 606 ANFDAEVKYLRKSYQTLEAASEELKNSRLFLKLLEAVLKTG 646 (885)
Q Consensus 606 ~~F~~~v~~l~~~l~~l~~A~~eLr~S~~L~~lL~~VLaiG 646 (885)
..|++.+..|+..|+.+..|.+. .+..+.++...+....
T Consensus 81 ~h~d~~i~~l~~~i~~~k~~~~~--q~~~~~~~~~~~~~~~ 119 (426)
T smart00806 81 KHIDDEIDTLQNELDEVKQALES--QREAIQRLKERQQNSA 119 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHhhhcc
Confidence 34677777777777776666543 2445666666555544
No 150
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=28.94 E-value=65 Score=29.49 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=19.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhh-hhccC
Q 038630 118 VAIAISVGIVTLGMLSALAFFLY-RHRVK 145 (885)
Q Consensus 118 ~~iai~~~~~~~~~~~~~~~f~~-~~r~~ 145 (885)
+..-|.++.+++.+|.+++.|++ |-|++
T Consensus 35 ~LaGiV~~D~vlTLLIv~~vy~car~r~r 63 (79)
T PF07213_consen 35 LLAGIVAADAVLTLLIVLVVYYCARPRRR 63 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccC
Confidence 44457778888888888888888 43333
No 151
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=28.76 E-value=3.5e+02 Score=32.10 Aligned_cols=64 Identities=14% Similarity=0.120 Sum_probs=41.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccCChhhhHHHHHHHHHHHHHHH
Q 038630 771 GKFFHSMKMFLKEAEEEIARIKADERMALSLVKEVTEYFHGNAAKEEAHPFRIFMIVRDFLAILDHVC 838 (885)
Q Consensus 771 d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~~YFGEd~~k~e~~P~efF~il~dFl~~ldka~ 838 (885)
-+..+.+..=+..+..++..++..+....-.|+.+|+-=-+ .. +.-.+||..=.+++..|.+-|
T Consensus 245 ~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkKiWE~EL~--~V--~eEQqfL~~QedL~~DL~eDl 308 (424)
T PF03915_consen 245 PKQLETVAKDISRASKELKKMKEYIKTEKPIWKKIWESELQ--KV--CEEQQFLKLQEDLLSDLKEDL 308 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH--HH--HHHHHHHHHHHHHHHHHHHHH
Confidence 35567777778888888888888888888888888773111 11 233577766555555554433
No 152
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=28.53 E-value=6.9e+02 Score=29.81 Aligned_cols=63 Identities=24% Similarity=0.336 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHcCCCCCCCHH-HHHHHHhc--CCCHHHHHHHHhhhcCc-CCCC-hHHHHHHHHhCcc
Q 038630 531 VTRDEVSEALLDGNPESLGAE-LLETLVKM--APTKEEEIKLREYKGDI-LKLG-SAERFLKAVLDIP 593 (885)
Q Consensus 531 ls~eeI~~AIl~~D~~~L~~E-~Le~Llk~--lPT~EEi~~Lk~~~gD~-~~L~-~aEqFl~~L~~IP 593 (885)
++++|+.+|-..-....++.| .++=|+.+ +|.-+|.-+.+...|.. -.|. .--.|+-.+++|.
T Consensus 118 ItVedLWeaW~~Sev~nWT~e~tvqWLi~~VeLPqyve~fk~~kv~G~alPRlAv~n~~f~~~~Lgik 185 (575)
T KOG4403|consen 118 ITVEDLWEAWKESEVHNWTNERTVQWLINDVELPQYVEAFKAKKVDGKALPRLAVPNSDFLGKVLGIK 185 (575)
T ss_pred eeHHHHHHHHHhhhhhcchHHHHHHHHHHhcccHHHHHHHHhccCCcccccccccCchHHhhhhhccC
Confidence 578888888877666666654 55667666 46666666655555543 3333 3346888888774
No 153
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=28.03 E-value=4.2e+02 Score=28.45 Aligned_cols=98 Identities=9% Similarity=0.140 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cCCC
Q 038630 738 GMDSDVLSSYVMKLEMGLEKVRLVLQYEKPDMQGKFFHSMKMFLKEAEEEIARIKADERMALSLVKEVTEYF----HGNA 813 (885)
Q Consensus 738 kvdld~L~~dv~kLe~gl~kv~~~Lq~~~~~~~d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~~YF----GEd~ 813 (885)
+-.+...+.++.++++.|+++ ++.|..-|+.+++.......-...|.+|. |+..
T Consensus 1 R~~l~~~E~ele~l~~~ikkL----------------------iK~ck~~i~a~k~~~~a~~~F~~~L~~f~~~~~g~~~ 58 (207)
T cd07602 1 RENLHEHEAELERTNKAIKEL----------------------IKECKNLISATKNLSKAQRSFAQTLQNFKFECIGETQ 58 (207)
T ss_pred CchHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcC
Q ss_pred ccccCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcccc
Q 038630 814 AKEEAHPFRIFMIVRDFLAILDHVCKEVGKMQERTMVGSARSFR 857 (885)
Q Consensus 814 ~k~e~~P~efF~il~dFl~~ldka~kE~~k~~er~~v~~~r~f~ 857 (885)
+.++..-..-+.-|.+.+..+...+..+-..-++.++.-...|.
T Consensus 59 tDDe~~i~~~L~kF~~~l~ei~~~r~~L~~q~~~~l~~pL~~F~ 102 (207)
T cd07602 59 TDDEIEIAESLKEFGRLIETVEDERDRMLENAEEQLIEPLEKFR 102 (207)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 154
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=27.81 E-value=4.8e+02 Score=31.41 Aligned_cols=93 Identities=19% Similarity=0.251 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhCCCCCCccccccccCccchHHHHhhchhhhcccccchhhhhhhcCCCHHHHHHHHHHHHHHHHHHHH
Q 038630 681 LLHFVVQEIIRAEGAGTKSTEVNVESKNSMREDEFKKQGLEVVSGLSRDLSNVKKAAGMDSDVLSSYVMKLEMGLEKVRL 760 (885)
Q Consensus 681 LLhyLvq~Iir~e~~~L~~~n~~~~~~~~~~~E~~~k~gl~~V~~l~~EL~~V~kAAkvdld~L~~dv~kLe~gl~kv~~ 760 (885)
.|||+|..|+. +...|..+...-.-|.+++.-|-.=++-=++-...
T Consensus 198 MlhW~V~li~~----------------------------------~~~~~~~~~tl~qq~~~e~~Vek~lfdY~~~~Y~~ 243 (622)
T COG5185 198 MLHWMVRLIIK----------------------------------LDMCLQPLKTLDQQDRYELMVEKLLFDYFTESYKS 243 (622)
T ss_pred HHHHHHHHHHH----------------------------------HHHHHhhhchHhhccHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhcC--CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038630 761 VLQYEK--PDMQGKFFHSMKMFLKEAEEEIARIKADERMALSLVKEVTE 807 (885)
Q Consensus 761 ~Lq~~~--~~~~d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~~ 807 (885)
.++... ......|...+.+|+.....+++.|+...++..+.+++..+
T Consensus 244 fl~~~~~~~~~e~Elk~~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k 292 (622)
T COG5185 244 FLKLEDNYEPSEQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEAMK 292 (622)
T ss_pred HhcCCCccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 155
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=27.66 E-value=4.4e+02 Score=33.03 Aligned_cols=73 Identities=15% Similarity=0.094 Sum_probs=49.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccCChhhhHHHHHHHHHHHHHHHHHHHHH
Q 038630 771 GKFFHSMKMFLKEAEEEIARIKADERMALSLVKEVTEYFHGNAAKEEAHPFRIFMIVRDFLAILDHVCKEVGKM 844 (885)
Q Consensus 771 d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~~YFGEd~~k~e~~P~efF~il~dFl~~ldka~kE~~k~ 844 (885)
..+.+.+..++++|.....+|...+..+.+....+|.-.|+-..... .+++.=+.|.+-+..+..+..+++++
T Consensus 46 ~e~~~~y~~kve~a~~~~~~L~~~ia~~eael~~l~s~l~~~~~~~~-~~~k~e~tLke~l~~l~~~le~lr~q 118 (660)
T KOG4302|consen 46 QECLEIYKRKVEEASESKARLLQEIAVIEAELNDLCSALGEPSIIGE-ISDKIEGTLKEQLESLKPYLEGLRKQ 118 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccc-cccccCccHHHHHHHHHHHHHHHHHH
Confidence 35667777888999999999988888888888899887776543211 12233335555666665555555553
No 156
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=27.61 E-value=2.2e+02 Score=30.88 Aligned_cols=57 Identities=9% Similarity=0.066 Sum_probs=36.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038630 739 MDSDVLSSYVMKLEMGLEKVRLVLQYEKPDMQGKFFHSMKMFLKEAEEEIARIKADERMALS 800 (885)
Q Consensus 739 vdld~L~~dv~kLe~gl~kv~~~Lq~~~~~~~d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~ 800 (885)
-..+.+..+-.+|...++.+..+++..+ .+.+.+...++..+.++..|+...+.+..
T Consensus 42 ~~id~~~~e~~~L~~e~~~l~~e~e~L~-----~~~~~l~~~v~~q~~el~~L~~qi~~~~~ 98 (251)
T PF11932_consen 42 KRIDQWDDEKQELLAEYRQLEREIENLE-----VYNEQLERQVASQEQELASLEQQIEQIEE 98 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666677777766666654432 45667777777777777777666665543
No 157
>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified
Probab=27.60 E-value=4.4e+02 Score=28.62 Aligned_cols=13 Identities=23% Similarity=0.276 Sum_probs=6.2
Q ss_pred CCCHHHHHHHHHH
Q 038630 738 GMDSDVLSSYVMK 750 (885)
Q Consensus 738 kvdld~L~~dv~k 750 (885)
++|+|....-+++
T Consensus 146 RLd~D~~K~r~~k 158 (220)
T cd07617 146 RLDLDACKARLKK 158 (220)
T ss_pred HHHHHHHHHHHhc
Confidence 4555554444443
No 158
>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain. They are similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely that they function in pathways important for pathogenicity []. ; PDB: 2AP3_A.
Probab=27.00 E-value=7.1e+02 Score=26.53 Aligned_cols=69 Identities=16% Similarity=0.166 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccCChhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 038630 775 HSMKMFLKEAEEEIARIKADERMALSLVKEVTEYFHGNAAKEEAHPFRIFMIVRDFLAILDHVCKEVGKMQER 847 (885)
Q Consensus 775 e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~~YFGEd~~k~e~~P~efF~il~dFl~~ldka~kE~~k~~er 847 (885)
+.+..-++......+.+-..+.+++..=+++-.|+..... ....+-.-+...-..++++.++.++.++.
T Consensus 118 ~~l~~~~~~ry~~~~~l~~~Y~~~l~~ekely~~L~~~d~----~~~~l~~ki~~iN~~y~~~~~~~~~fn~~ 186 (204)
T PF10368_consen 118 KELNEAMKKRYKSYDKLYKAYKKALELEKELYEMLKDKDT----TQKQLDEKIKAINQSYKEVNKQKEKFNEY 186 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555667777888888888888888876533 34566666666666666666655555553
No 159
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=26.91 E-value=2.2e+02 Score=33.80 Aligned_cols=67 Identities=21% Similarity=0.174 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccCChhhhHHH--H----HHHHHHHHHHHHHHHHH
Q 038630 778 KMFLKEAEEEIARIKADERMALSLVKEVTEYFHGNAAKEEAHPFRIFMI--V----RDFLAILDHVCKEVGKM 844 (885)
Q Consensus 778 ~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~~YFGEd~~k~e~~P~efF~i--l----~dFl~~ldka~kE~~k~ 844 (885)
+.|+..-++.+..|+++++++.+.|..+-.+--+...........++.. + .++-...+.++.|++.+
T Consensus 291 QqfL~~QedL~~DL~eDl~k~~etf~lveq~~~~Q~k~~~~~~~r~~~~~~~~~pg~~~~~~~~~VL~EV~aL 363 (424)
T PF03915_consen 291 QQFLKLQEDLLSDLKEDLKKASETFALVEQCTEEQEKSPSRSRNRPVANLPIPEPGEDPHEARDQVLGEVRAL 363 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCccCCCCCCCCCChhhHHHHHHHHHHhc
Confidence 4577778888888888888888888666554333222111122233311 1 24455566777777664
No 160
>PF07083 DUF1351: Protein of unknown function (DUF1351); InterPro: IPR009785 This entry is represented by Lactobacillus prophage Lj928, Orf309. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial and phage proteins of around 230 residues in length. The function of this family is unknown.
Probab=26.86 E-value=5.3e+02 Score=27.61 Aligned_cols=45 Identities=16% Similarity=0.153 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHH
Q 038630 744 LSSYVMKLEMGLEKVRLVLQYEKPDMQGKFFHSMKMFLKEAEEEI 788 (885)
Q Consensus 744 L~~dv~kLe~gl~kv~~~Lq~~~~~~~d~F~e~m~~Fl~~Ae~ei 788 (885)
...++++|.+.|+.-+..+...-..+-..|...++.......+-+
T Consensus 47 ~rA~LNKl~k~id~~RK~ikk~~~~P~~~Fe~~~K~l~~~i~~~~ 91 (215)
T PF07083_consen 47 DRAELNKLKKAIDDKRKEIKKEYSKPIKEFEAKIKELIAPIDEAS 91 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH
Confidence 455666777777666666654432333455555555444433333
No 161
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=26.34 E-value=5e+02 Score=32.17 Aligned_cols=72 Identities=7% Similarity=0.169 Sum_probs=46.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhccCCCccccCChhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 038630 771 GKFFHSMKMFLKEAEEEIARIKADERMAL----SLVKEVTEYFHGNAAKEEAHPFRIFMIVRDFLAILDHVCKEVGKMQE 846 (885)
Q Consensus 771 d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~----~~~kel~~YFGEd~~k~e~~P~efF~il~dFl~~ldka~kE~~k~~e 846 (885)
+.-.+++..+++..+.++..|..++.... +.|+.+-.--.. +. ....+-..-+..+-...+....|++...|
T Consensus 393 e~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~---~~-~e~~~~~~~ik~~r~~~k~~~~e~~~Kee 468 (594)
T PF05667_consen 393 EENIAKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKASN---RE-SESKQKLQEIKELREEIKEIEEEIRQKEE 468 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh---cc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34558899999999999999988887643 344444432211 11 12234556677777777777777776555
No 162
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=26.21 E-value=5.7e+02 Score=29.08 Aligned_cols=69 Identities=7% Similarity=-0.071 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 038630 741 SDVLSSYVMKLEMGLEKVRLVLQYEKPDMQG-KFFHSMKMFLKEAEEEIARIKADERMALSLVKEVTEYFHGNA 813 (885)
Q Consensus 741 ld~L~~dv~kLe~gl~kv~~~Lq~~~~~~~d-~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~~YFGEd~ 813 (885)
.+-+.+++.++++.++..+..++..+..... ..... .....+.+..|+.++.++...+.++..||+++.
T Consensus 172 ~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d~~~~----~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~ 241 (362)
T TIGR01010 172 IAFAENEVKEAEQRLNATKAELLKYQIKNKVFDPKAQ----SSAQLSLISTLEGELIRVQAQLAQLRSITPEQN 241 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 4557778888888888877766544311100 00000 112334466666677777777777888888853
No 163
>PF15003 HAUS2: HAUS augmin-like complex subunit 2
Probab=26.15 E-value=9.2e+02 Score=27.16 Aligned_cols=40 Identities=13% Similarity=0.229 Sum_probs=19.9
Q ss_pred HHHHHHHHhccCCCccccCC----hhhhHHHHHHHHHHHHHHHH
Q 038630 800 SLVKEVTEYFHGNAAKEEAH----PFRIFMIVRDFLAILDHVCK 839 (885)
Q Consensus 800 ~~~kel~~YFGEd~~k~e~~----P~efF~il~dFl~~ldka~k 839 (885)
....+|..=|+.+.=..++. --++|..+..|+..|...++
T Consensus 111 ~Lr~RLqkP~~qe~LPVEA~yHr~vVeLL~laa~fi~~Le~~Le 154 (277)
T PF15003_consen 111 RLRQRLQKPYCQENLPVEAQYHRYVVELLELAASFIEKLEEHLE 154 (277)
T ss_pred HHHHHHHhhhhhcCccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555455543322221 12556666677766665554
No 164
>PRK09546 zntB zinc transporter; Reviewed
Probab=26.11 E-value=4.8e+02 Score=29.28 Aligned_cols=12 Identities=17% Similarity=0.055 Sum_probs=6.9
Q ss_pred cHHHHHHHHHHH
Q 038630 680 TLLHFVVQEIIR 691 (885)
Q Consensus 680 TLLhyLvq~Iir 691 (885)
.+|+.|+..++.
T Consensus 142 ~ll~~lld~ivd 153 (324)
T PRK09546 142 GWLVDVCDALTD 153 (324)
T ss_pred HHHHHHHHHHHH
Confidence 466666655553
No 165
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=26.04 E-value=59 Score=33.36 Aligned_cols=27 Identities=26% Similarity=0.331 Sum_probs=14.3
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHhhhh
Q 038630 116 KKVAIAISVGIVTLGMLSALAFFLYRH 142 (885)
Q Consensus 116 ~k~~iai~~~~~~~~~~~~~~~f~~~~ 142 (885)
+|+.|-|.++++.++++++.+||++.+
T Consensus 18 kkliiii~~~~lll~~~g~~~~f~l~~ 44 (170)
T PRK05696 18 KKLIIIIVIGVLLALGGGGAAWFFMGS 44 (170)
T ss_pred eeEEeeHHHHHHHHHHHHHHHHhhhcC
Confidence 333333455555555556666666544
No 166
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=25.80 E-value=8.1e+02 Score=30.20 Aligned_cols=30 Identities=17% Similarity=0.223 Sum_probs=16.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 038630 600 EAMLYRANFDAEVKYLRKSYQTLEAASEEL 629 (885)
Q Consensus 600 ~allfk~~F~~~v~~l~~~l~~l~~A~~eL 629 (885)
.+|-.+..+++.+++|+..+..+..+...|
T Consensus 361 ~vw~~~l~~~~~f~~le~~~~~~~~l~~~i 390 (581)
T KOG0995|consen 361 EVWELKLEIEDFFKELEKKFIDLNSLIRRI 390 (581)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666666555554444433
No 167
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=25.80 E-value=3.1e+02 Score=23.60 Aligned_cols=23 Identities=17% Similarity=0.114 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 038630 786 EEIARIKADERMALSLVKEVTEY 808 (885)
Q Consensus 786 ~ei~~L~~~~~~a~~~~kel~~Y 808 (885)
.+.+.|.+...++.+.+++++..
T Consensus 21 ~en~~i~~~ve~i~envk~ll~l 43 (55)
T PF05377_consen 21 KENEEISESVEKIEENVKDLLSL 43 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444443
No 168
>PF03999 MAP65_ASE1: Microtubule associated protein (MAP65/ASE1 family); InterPro: IPR007145 This is a family of microtubule associated proteins. One of its members is the yeast anaphase spindle elongation protein.; PDB: 3NRX_A 3NRY_A.
Probab=25.72 E-value=52 Score=40.51 Aligned_cols=63 Identities=13% Similarity=0.116 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhhccccccCCCCCceeeeeccchhccccccc
Q 038630 605 RANFDAEVKYLRKSYQTLEAASEELKNSRLFLKLLEAVLKTGNRMNVGTNRGDAKAFKLDTLLKLVDIKG 674 (885)
Q Consensus 605 k~~F~~~v~~l~~~l~~l~~A~~eLr~S~~L~~lL~~VLaiGN~LN~gt~rG~A~GFkLdSL~KL~dtKs 674 (885)
..++..+++.+......|..-|++|.-...-..+-..|+.++ ......++.-+.|.+|.....
T Consensus 155 ~~e~~~R~~~v~~l~~~I~~l~~~L~~~~~~~~~e~~l~~~~-------~~~~~~~Ls~~~l~~L~~~~~ 217 (619)
T PF03999_consen 155 QEEKERRLEEVRELREEIISLMEELGIDPERTSFEKDLLSYS-------EDEESFCLSDENLEKLQELLQ 217 (619)
T ss_dssp ----------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccchhhccccc-------cccccCCCCHHHHHHHHHHHH
Confidence 445556666666666666666666543322011111122211 123455666677777765554
No 169
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=25.51 E-value=3.4e+02 Score=26.71 Aligned_cols=36 Identities=17% Similarity=0.249 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038630 772 KFFHSMKMFLKEAEEEIARIKADERMALSLVKEVTE 807 (885)
Q Consensus 772 ~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~~ 807 (885)
.....+..-++.+..+|..|+..+..+....+.-.+
T Consensus 81 ~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~r~~k~e 116 (139)
T PF05615_consen 81 QLNEEIEQEIEQAKKEIEELKEELEEAKRVRQNKEE 116 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666777777788887777766654444433
No 170
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=25.46 E-value=3.8e+02 Score=28.58 Aligned_cols=96 Identities=16% Similarity=0.161 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccc
Q 038630 738 GMDSDVLSSYVMKLEMGLEKVRLVLQYEKPDMQGKFFHSMKMFLKEAEEEIARIKADERMALSLVKEVTEYFHGNAAKEE 817 (885)
Q Consensus 738 kvdld~L~~dv~kLe~gl~kv~~~Lq~~~~~~~d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~~YFGEd~~k~e 817 (885)
+..++.+++++..|+..++++-+.. .++.+....|+.....-...|++... |+++|.-..+
T Consensus 1 r~~i~~~E~d~~~Le~~l~Kl~K~~--------~~~~dag~~~~~a~~~F~~~l~d~~~-----------~~~~De~i~~ 61 (200)
T cd07638 1 RAALEDVEGDVAELELKLDKLVKLC--------IGMIDAGKAFCQANKQFMNGIRDLAQ-----------YSSKDAVIET 61 (200)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHH--------HHHHHhHHHHHHHHHHHHHHHHHHHH-----------hCCcchhhHH
Q ss_pred CChhhhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcccc
Q 038630 818 AHPFRIFMIVRDFLAILDHVCKEVGKMQERTMVGSARSFR 857 (885)
Q Consensus 818 ~~P~efF~il~dFl~~ldka~kE~~k~~er~~v~~~r~f~ 857 (885)
+ +.-|.+.++.+...+..+...-++.++.--..|.
T Consensus 62 ~-----l~kF~~~l~ei~~~~~~L~~q~~~~l~~~L~~F~ 96 (200)
T cd07638 62 S-----LTKFSDTLQEMINYHTILFDQAQRSIKAQLQTFV 96 (200)
T ss_pred H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 171
>COG3889 Predicted solute binding protein [General function prediction only]
Probab=25.25 E-value=79 Score=39.72 Aligned_cols=16 Identities=44% Similarity=0.532 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHhhhhc
Q 038630 128 TLGMLSALAFFLYRHR 143 (885)
Q Consensus 128 ~~~~~~~~~~f~~~~r 143 (885)
-++.|++++|||.|||
T Consensus 856 iiv~LaAla~lLrRRr 871 (872)
T COG3889 856 IIVGLAALALLLRRRR 871 (872)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 3444556666665554
No 172
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=25.21 E-value=7.2e+02 Score=27.97 Aligned_cols=31 Identities=16% Similarity=0.338 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 038630 781 LKEAEEEIARIKADERMALSLVKEVTEYFHG 811 (885)
Q Consensus 781 l~~Ae~ei~~L~~~~~~a~~~~kel~~YFGE 811 (885)
++.++.++...+..+..+...|++....|..
T Consensus 116 ~~~~~~~i~~a~~~l~~a~~~~~R~~~L~~~ 146 (346)
T PRK10476 116 AASANEQVERARANAKLATRTLERLEPLLAK 146 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 3455566666666666666666666655543
No 173
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=25.12 E-value=7e+02 Score=31.49 Aligned_cols=50 Identities=10% Similarity=0.068 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCccccCChhhhHHHHHHHHHHHHHHHHH
Q 038630 787 EIARIKADERMALSLVKEVTEYFHGNAAKEEAHPFRIFMIVRDFLAILDHVCKE 840 (885)
Q Consensus 787 ei~~L~~~~~~a~~~~kel~~YFGEd~~k~e~~P~efF~il~dFl~~ldka~kE 840 (885)
+|..|+..++.....|..+++.|||.... -+++=-.|.|...+|+.-..|
T Consensus 905 ~~p~~~~~ledL~qRy~a~LqmyGEk~Ee----~EELrlDl~dlK~mYk~QIde 954 (961)
T KOG4673|consen 905 RVPGIKAELEDLRQRYAAALQMYGEKDEE----LEELRLDLVDLKEMYKEQIDE 954 (961)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcchHHH----HHHHHhhHHHHHHHHHHHHHH
Confidence 45567777777888899999999985322 234444555555555544433
No 174
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=24.98 E-value=8e+02 Score=31.16 Aligned_cols=52 Identities=13% Similarity=0.118 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcc-ccCChhhhHHHHHHHHHHH
Q 038630 782 KEAEEEIARIKADERMALSLVKEVTEYFHGNAAK-EEAHPFRIFMIVRDFLAIL 834 (885)
Q Consensus 782 ~~Ae~ei~~L~~~~~~a~~~~kel~~YFGEd~~k-~e~~P~efF~il~dFl~~l 834 (885)
+...++++.+.+..+...++.++++.-.+..... .+++ .+|+.-|..|-..+
T Consensus 596 e~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~AE-r~~~~EL~~~~~~l 648 (717)
T PF10168_consen 596 EKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEAE-REFKKELERMKDQL 648 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHHH-HHHHHHHHHHHHHH
Confidence 3445566666666677777777776666542111 1111 35665554444433
No 175
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=24.77 E-value=4.9e+02 Score=28.61 Aligned_cols=19 Identities=11% Similarity=-0.148 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 038630 825 MIVRDFLAILDHVCKEVGK 843 (885)
Q Consensus 825 ~il~dFl~~ldka~kE~~k 843 (885)
..|.+|+...-+.|+++-+
T Consensus 217 ~~~~~yae~~i~~~~~~~~ 235 (243)
T cd07666 217 SAFTDMAENNISYYEECLA 235 (243)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443
No 176
>PRK11376 hlyE hemolysin E; Provisional
Probab=24.59 E-value=5.9e+02 Score=27.81 Aligned_cols=33 Identities=15% Similarity=-0.050 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038630 774 FHSMKMFLKEAEEEIARIKADERMALSLVKEVT 806 (885)
Q Consensus 774 ~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~ 806 (885)
-..|..+-..|..+++.|+.....+...|.+++
T Consensus 48 DRaMlgYqG~AK~~Ld~IRsLnSdAr~kYqecV 80 (303)
T PRK11376 48 SRFKQEYSQAASVLVGDIKTLLMDSQDKYFEAT 80 (303)
T ss_pred HHHhhhhhhHHHHhhhHHHHHHHHHHHHHHHhh
Confidence 345677777888888888888877777666554
No 177
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=24.50 E-value=2.4e+02 Score=34.55 Aligned_cols=34 Identities=18% Similarity=0.334 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038630 774 FHSMKMFLKEAEEEIARIKADERMALSLVKEVTE 807 (885)
Q Consensus 774 ~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~~ 807 (885)
.+.++.-+.++..++.+|+...+.+...++++++
T Consensus 116 iEelk~~i~~~q~eL~~Lk~~ieqaq~~~~El~~ 149 (907)
T KOG2264|consen 116 IEELKRLIPQKQLELSALKGEIEQAQRQLEELRE 149 (907)
T ss_pred HHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHh
Confidence 4667777888888899999988888888888876
No 178
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=24.49 E-value=1.8e+03 Score=29.63 Aligned_cols=27 Identities=7% Similarity=0.206 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 038630 784 AEEEIARIKADERMALSLVKEVTEYFH 810 (885)
Q Consensus 784 Ae~ei~~L~~~~~~a~~~~kel~~YFG 810 (885)
...++..++..+..+.+.+.++-..|.
T Consensus 357 ~~~~~~~l~~~~~~Lt~~~~di~~ky~ 383 (1201)
T PF12128_consen 357 WRNELENLQEQLDLLTSKHQDIESKYN 383 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555543
No 179
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=24.44 E-value=7.5e+02 Score=26.74 Aligned_cols=86 Identities=13% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----ccCCCccc
Q 038630 741 SDVLSSYVMKLEMGLEKVRLVLQYEKPDMQGKFFHSMKMFLKEAEEEIARIKADERMALSLVKEVTEY----FHGNAAKE 816 (885)
Q Consensus 741 ld~L~~dv~kLe~gl~kv~~~Lq~~~~~~~d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~~Y----FGEd~~k~ 816 (885)
+++++.|+.+|+..++++ ++.|..-++..++.......-...|.+| |+.....+
T Consensus 4 l~~~E~d~~~L~~~~~kL----------------------~K~c~~~~~a~~~~~~A~~~F~~~L~ef~~~~f~~~~dDe 61 (215)
T cd07601 4 LNVFEEDALQLSSYMNQL----------------------LQACKRVYDAQNELKSATQALSKKLGEYEKQKFELGRDDE 61 (215)
T ss_pred HHHHHhhHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCcH
Q ss_pred cCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 038630 817 EAHPFRIFMIVRDFLAILDHVCKEVGKMQERTMV 850 (885)
Q Consensus 817 e~~P~efF~il~dFl~~ldka~kE~~k~~er~~v 850 (885)
.+. ..+.-|..+++.+...++.+...-++.++
T Consensus 62 ~~~--~~l~kFs~~l~El~~~~~~L~~q~~~~l~ 93 (215)
T cd07601 62 ILV--STLKQFSKVVDELSTMHSTLSSQLADTVL 93 (215)
T ss_pred HHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 180
>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]
Probab=24.28 E-value=1.4e+03 Score=28.23 Aligned_cols=148 Identities=18% Similarity=0.273 Sum_probs=82.5
Q ss_pred ccccccChhhHHHHHH----Hhhh-cCCCHHHHHHHHHcCCC-CCCCHHHHHHHHhcCCCHHHHHHHHhhhcCcCCCChH
Q 038630 509 LENRVLDPKKSQNIAI----LLRA-LNVTRDEVSEALLDGNP-ESLGAELLETLVKMAPTKEEEIKLREYKGDILKLGSA 582 (885)
Q Consensus 509 k~isVLD~KRaqNIsI----~L~k-lkls~eeI~~AIl~~D~-~~L~~E~Le~Llk~lPT~EEi~~Lk~~~gD~~~L~~a 582 (885)
++++|+|..-.+-|+. .|.- -.++++|.+..|+.|+. +.+..|+...|++++-..--..++=.. -.
T Consensus 439 e~~qI~D~T~~Nlv~frr~IYLti~SSldfeEaaHKLLKmkip~~q~~elc~mii~cc~QerTy~kFYgl--------L~ 510 (739)
T KOG2140|consen 439 EKLQIIDMTETNLVNFRRTIYLTIQSSLDFEEAAHKLLKMKIPESQEKELCNMIIDCCAQERTYEKFYGL--------LG 510 (739)
T ss_pred ccceeeccccchhHHhhhhheeeeeccCcHHHHHHHHHhccCCchhhHHHHHHHHHHhhhHHHHHHHHHH--------HH
Confidence 3578888776554442 2221 14789999999999985 567778888888776433222211111 12
Q ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhhccccccCCCCCceeeee
Q 038630 583 ERFLKAVLDIPFAFKRVEAMLYRANFDAEVKYLRKSYQTLEAASEELKNSRLFLKLLEAVLKTGNRMNVGTNRGDAKAFK 662 (885)
Q Consensus 583 EqFl~~L~~IP~l~~RL~allfk~~F~~~v~~l~~~l~~l~~A~~eLr~S~~L~~lL~~VLaiGN~LN~gt~rG~A~GFk 662 (885)
|+||.. .| .+...|+.++.+--..|..++. +.|| .+.+++ |+.|- -++.++.
T Consensus 511 eRfc~l--------~r----~~q~~fe~~f~q~YstIhr~Et--nkLR---nlakff------ahLls-----td~lpw~ 562 (739)
T KOG2140|consen 511 ERFCML--------HR----EWQEAFEKCFKQQYSTIHRYET--NKLR---NLAKFF------AHLLS-----TDALPWD 562 (739)
T ss_pred HHHHHH--------HH----HHHHHHHHHHHHHHHHHHHHhH--HHHH---HHHHHH------HHHhc-----ccccchH
Confidence 333321 01 1233344443333333333321 2333 233333 33332 2688888
Q ss_pred ccchhcccccccCCCCccHHHHHHHHHHHH
Q 038630 663 LDTLLKLVDIKGTDGKTTLLHFVVQEIIRA 692 (885)
Q Consensus 663 LdSL~KL~dtKs~D~k~TLLhyLvq~Iir~ 692 (885)
+=...||.+--++....-++.|+-|+|++.
T Consensus 563 vl~~ikLTEEdTtsssRIfiKilFqELve~ 592 (739)
T KOG2140|consen 563 VLACIKLTEEDTTSSSRIFIKILFQELVEA 592 (739)
T ss_pred HHHHhhcccccCCccceehHHHHHHHHHHH
Confidence 877788887777666778889998888764
No 181
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=24.11 E-value=1.2e+03 Score=27.35 Aligned_cols=10 Identities=40% Similarity=0.521 Sum_probs=7.9
Q ss_pred CccHHHHHHH
Q 038630 678 KTTLLHFVVQ 687 (885)
Q Consensus 678 k~TLLhyLvq 687 (885)
..||.|||-.
T Consensus 112 ~ktL~DFVd~ 121 (412)
T PF04108_consen 112 PKTLYDFVDE 121 (412)
T ss_pred CCcHHHhcCH
Confidence 4599999964
No 182
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.85 E-value=1.3e+03 Score=27.72 Aligned_cols=177 Identities=16% Similarity=0.093 Sum_probs=0.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHh-cHHHHHHHHHHHhhccccccCCCCCceeeeeccchhcccccccCCCCccHHHH
Q 038630 606 ANFDAEVKYLRKSYQTLEAASEELKN-SRLFLKLLEAVLKTGNRMNVGTNRGDAKAFKLDTLLKLVDIKGTDGKTTLLHF 684 (885)
Q Consensus 606 ~~F~~~v~~l~~~l~~l~~A~~eLr~-S~~L~~lL~~VLaiGN~LN~gt~rG~A~GFkLdSL~KL~dtKs~D~k~TLLhy 684 (885)
...+.+-+.|.+.+..+..|...+.. +.+|..-|.-| +.=.+++...+..+.++ ..+|.+=
T Consensus 40 ~~~e~e~~kLqkd~k~y~~av~am~~a~~~l~e~l~ei--y~p~~~g~~~l~~v~~~----------------~d~l~~d 101 (460)
T KOG3771|consen 40 NKQEAEGKRLQKDLKNYLDAVRAMLAASKKLAESLQEI--YEPDWPGRDYLQAVADN----------------DDLLWKD 101 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcccccHHHHHHHHHH----------------HHHHHHH
Q ss_pred HHHHHHHHhCCCCCCccccccccCccchHHHHhhchhhhcccccchhhhhhhcC------CCHHHHHHHHHHHHHHHHHH
Q 038630 685 VVQEIIRAEGAGTKSTEVNVESKNSMREDEFKKQGLEVVSGLSRDLSNVKKAAG------MDSDVLSSYVMKLEMGLEKV 758 (885)
Q Consensus 685 Lvq~Iir~e~~~L~~~n~~~~~~~~~~~E~~~k~gl~~V~~l~~EL~~V~kAAk------vdld~L~~dv~kLe~gl~kv 758 (885)
+.+.|.+. .+..+..|..-+..|+++.. +|+|....-++++++.-++-
T Consensus 102 ~~~~l~d~--------------------------vl~pl~~~~~~fpdik~~i~KR~~Kl~DyD~~r~~~~kvq~~k~kd 155 (460)
T KOG3771|consen 102 LDQKLVDQ--------------------------VLLPLDTYLGQFPDIKKAIAKRGRKLVDYDSARHSFEKLQAKKKKD 155 (460)
T ss_pred HHHHHHHh--------------------------hhhhHHHhhhhchhHHHHHHhhcchhhhhHHHHHHHHHHHHhcCCC
Q ss_pred HHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhccCCCccccCChhhhHHHHHHHHHHHHHH
Q 038630 759 RLVLQYEKPDMQGKFFHSMKMFLKEAEEEIARIKADERMALSLVKE-VTEYFHGNAAKEEAHPFRIFMIVRDFLAILDHV 837 (885)
Q Consensus 759 ~~~Lq~~~~~~~d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~ke-l~~YFGEd~~k~e~~P~efF~il~dFl~~ldka 837 (885)
..-+.. |++++...+..++.++....+ |=.+|+....-....-..||.+=..|.....+.
T Consensus 156 ~~k~~K-------------------AeeEl~~Aq~~fE~lN~~L~eELP~L~~sRv~f~vp~Fqsl~~~q~vf~~Emskl 216 (460)
T KOG3771|consen 156 EAKLAK-------------------AEEELEKAQQVFEELNNELLEELPALYSSRVGFFVPTFQSLFNLQLVFHKEMSKL 216 (460)
T ss_pred hhhhHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHh
Q 038630 838 CKEVGKMQ 845 (885)
Q Consensus 838 ~kE~~k~~ 845 (885)
++.+..+.
T Consensus 217 ~~~L~~v~ 224 (460)
T KOG3771|consen 217 YKNLYDVL 224 (460)
T ss_pred HHHHHHHH
No 183
>PRK15396 murein lipoprotein; Provisional
Probab=23.66 E-value=4.6e+02 Score=24.03 Aligned_cols=23 Identities=26% Similarity=0.242 Sum_probs=15.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Q 038630 740 DSDVLSSYVMKLEMGLEKVRLVL 762 (885)
Q Consensus 740 dld~L~~dv~kLe~gl~kv~~~L 762 (885)
+++.|..+|..|...++.+...+
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv 48 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDV 48 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777666655544
No 184
>PRK11020 hypothetical protein; Provisional
Probab=23.65 E-value=4e+02 Score=26.14 Aligned_cols=47 Identities=28% Similarity=0.275 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHH---HHHHHHHHH
Q 038630 744 LSSYVMKLEMGLEKVRLVLQYEKPDMQGKFFHSMKMFLKEA---EEEIARIKA 793 (885)
Q Consensus 744 L~~dv~kLe~gl~kv~~~Lq~~~~~~~d~F~e~m~~Fl~~A---e~ei~~L~~ 793 (885)
+.+||+.|...|++++..+.....-.+ .+.+.+|.++. +.+|..|+.
T Consensus 3 ~K~Eiq~L~drLD~~~~Klaaa~~rgd---~~~i~qf~~E~~~l~k~I~~lk~ 52 (118)
T PRK11020 3 EKNEIKRLSDRLDAIRHKLAAASLRGD---AEKYAQFEKEKATLEAEIARLKE 52 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888899888876655442222 34555555543 344444443
No 185
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.49 E-value=8.6e+02 Score=27.56 Aligned_cols=34 Identities=9% Similarity=0.115 Sum_probs=20.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038630 771 GKFFHSMKMFLKEAEEEIARIKADERMALSLVKE 804 (885)
Q Consensus 771 d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~ke 804 (885)
......|..-+.+...+-..|+..++.+.+...+
T Consensus 74 ~~~k~~l~~~~~~~~~~a~~Ik~kL~~~e~~~~~ 107 (297)
T KOG0810|consen 74 KELKRKLESLVDEIRRRARKIKTKLKALEKENEA 107 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556666666666666666666666555554443
No 186
>cd07620 BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of SH3-domain Binding Protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. SH3-domain binding protein 1 (SH3BP1 or 3BP-1) is a Rac GTPase activating protein that inhibits Rac-mediated platelet-derived growth factor (PDGF)-induced membrane ruffling. SH3BP1 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=23.44 E-value=4.9e+02 Score=28.96 Aligned_cols=21 Identities=5% Similarity=0.189 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 038630 609 DAEVKYLRKSYQTLEAASEEL 629 (885)
Q Consensus 609 ~~~v~~l~~~l~~l~~A~~eL 629 (885)
++.+..|+..++.+.++|..|
T Consensus 14 ~edl~~iEkrvD~~k~~~~~i 34 (257)
T cd07620 14 TEDLVLVEQRVEPAKKAAQLI 34 (257)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777776655
No 187
>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact
Probab=23.38 E-value=9.9e+02 Score=26.09 Aligned_cols=67 Identities=13% Similarity=0.070 Sum_probs=36.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhhccccccCCCCCceeeeeccchhcccccccCCCCccHHHHHH
Q 038630 607 NFDAEVKYLRKSYQTLEAASEELKNSRLFLKLLEAVLKTGNRMNVGTNRGDAKAFKLDTLLKLVDIKGTDGKTTLLHFVV 686 (885)
Q Consensus 607 ~F~~~v~~l~~~l~~l~~A~~eLr~S~~L~~lL~~VLaiGN~LN~gt~rG~A~GFkLdSL~KL~dtKs~D~k~TLLhyLv 686 (885)
+|++.+.+|...++....+++.|.. .+-+||+.. .|.-+++..+.|+...+ .+..+-.-+|-
T Consensus 14 e~d~df~~l~~~~d~t~~~~~~i~~------------~t~~~LqPN----p~~r~e~~~~~k~~~~~--~~~~~~~~~Lg 75 (229)
T cd07616 14 ELDAHLENLLSKAECTKHWTEKIMK------------QTEVLLQPN----PNARIEEFVYEKLDRKA--PSRMNNPELLG 75 (229)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHH------------HHHHHhCCC----chhhHHHHHHHHHhccC--CCCCChHHHHH
Confidence 5667777888888888887776632 122333322 13334444466664333 22333456666
Q ss_pred HHHHH
Q 038630 687 QEIIR 691 (885)
Q Consensus 687 q~Iir 691 (885)
+.+++
T Consensus 76 ~~M~~ 80 (229)
T cd07616 76 QYMID 80 (229)
T ss_pred HHHHH
Confidence 65554
No 188
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=23.24 E-value=1.1e+03 Score=30.96 Aligned_cols=68 Identities=19% Similarity=0.186 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHH-HhhccccccCCCCCceeeeeccchhcccccccCCCCccHHHHHHHHH
Q 038630 611 EVKYLRKSYQTLEAASEELKNSRLFLKLLEAV-LKTGNRMNVGTNRGDAKAFKLDTLLKLVDIKGTDGKTTLLHFVVQEI 689 (885)
Q Consensus 611 ~v~~l~~~l~~l~~A~~eLr~S~~L~~lL~~V-LaiGN~LN~gt~rG~A~GFkLdSL~KL~dtKs~D~k~TLLhyLvq~I 689 (885)
..+++...+..+..+.+.-.++-.|.-+++++ +.-|+ +|.+ .|.++.+....+++.++..|+++.|
T Consensus 43 ~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~-~~~~------------~lv~~l~~~~~~~~~~~ve~~~~~i 109 (906)
T PRK14720 43 SENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRP-LNDS------------NLLNLIDSFSQNLKWAIVEHICDKI 109 (906)
T ss_pred hcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcc-hhhh------------hhhhhhhhcccccchhHHHHHHHHH
Confidence 33444555555655555555666666666653 23333 2222 2347777777777778888888766
Q ss_pred HH
Q 038630 690 IR 691 (885)
Q Consensus 690 ir 691 (885)
.+
T Consensus 110 ~~ 111 (906)
T PRK14720 110 LL 111 (906)
T ss_pred Hh
Confidence 54
No 189
>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain
Probab=23.22 E-value=4e+02 Score=28.87 Aligned_cols=40 Identities=25% Similarity=0.327 Sum_probs=31.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 038630 770 QGKFFHSMKMFLKEAEEEIARIKADERMALSLVKEVTEYF 809 (885)
Q Consensus 770 ~d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~~YF 809 (885)
.|.|++.-+.|+.+.+..+..+......+...-++++.=+
T Consensus 22 ~D~~Fe~~k~~l~~l~~~Lk~~~~~~~~lv~~rkela~~~ 61 (219)
T cd07621 22 VDEFFEQEKNFLVEYHNRIKDATAKADKMTRKHKDVADSY 61 (219)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688899999999999999888888777766666665533
No 190
>PF08359 TetR_C_4: YsiA-like protein, C-terminal region; InterPro: IPR013570 The members of this family are thought to be TetR-type (tetracycline resistance) transcriptional regulators that bear particular similarity to YsiA (P94548 from SWISSPROT). This entry represents the C-terminal domain.; PDB: 1VI0_B.
Probab=23.07 E-value=2.2e+02 Score=27.09 Aligned_cols=12 Identities=25% Similarity=0.717 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 038630 827 VRDFLAILDHVC 838 (885)
Q Consensus 827 l~dFl~~ldka~ 838 (885)
.++|.+.+.+..
T Consensus 66 ~~~~~~~i~~iI 77 (133)
T PF08359_consen 66 RREYLRIIEEII 77 (133)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444433
No 191
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=22.99 E-value=4.3e+02 Score=26.38 Aligned_cols=69 Identities=13% Similarity=0.261 Sum_probs=0.0
Q ss_pred hhhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038630 730 LSNVKKAAGMDSDVLSSYVMKLEMGLEKVRLVLQYEKPDMQGKFFHSMKMFLKEAEEEIARIKADERMALSLVKEVTE 807 (885)
Q Consensus 730 L~~V~kAAkvdld~L~~dv~kLe~gl~kv~~~Lq~~~~~~~d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~~ 807 (885)
|.....+-..+-+.|.+-+++++..+.++-..+...+ ..+..|.+..+. |+.|...+.++...+.+++.
T Consensus 40 L~~cA~~Va~~Q~~L~~riKevd~~~~~l~~~~~erq--------k~~~k~ae~L~k-v~els~~L~~~~~lL~~~v~ 108 (131)
T PF10158_consen 40 LNQCAEAVAFDQNALAKRIKEVDQEIAKLLQQMVERQ--------KRFAKFAEQLEK-VNELSQQLSRCQSLLNQTVP 108 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
No 192
>PF05337 CSF-1: Macrophage colony stimulating factor-1 (CSF-1); InterPro: IPR008001 Colony stimulating factor 1 (CSF-1) is a homodimeric polypeptide growth factor whose primary function is to regulate the survival, proliferation, differentiation, and function of cells of the mononuclear phagocytic lineage. This lineage includes mononuclear phagocytic precursors, blood monocytes, tissue macrophages, osteoclasts, and microglia of the brain, all of which possess cell surface receptors for CSF-1. The protein has also been linked with male fertility [] and mutations in the Csf-1 gene have been found to cause osteopetrosis and failure of tooth eruption [].; GO: 0005125 cytokine activity, 0008083 growth factor activity, 0016021 integral to membrane; PDB: 3EJJ_A.
Probab=22.93 E-value=28 Score=38.61 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=0.0
Q ss_pred HHHHHHHhhhhccCCCCCcccc
Q 038630 132 LSALAFFLYRHRVKHPGESQKL 153 (885)
Q Consensus 132 ~~~~~~f~~~~r~~~~~~~~~~ 153 (885)
|++-++++||||+|.+.|.++.
T Consensus 240 LaVGGLLfYr~rrRs~~e~q~~ 261 (285)
T PF05337_consen 240 LAVGGLLFYRRRRRSHREPQTV 261 (285)
T ss_dssp ----------------------
T ss_pred hhccceeeeccccccccccccc
Confidence 3444556778888877776444
No 193
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=22.84 E-value=9.2e+02 Score=26.37 Aligned_cols=70 Identities=17% Similarity=0.106 Sum_probs=48.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccCChhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 038630 771 GKFFHSMKMFLKEAEEEIARIKADERMALSLVKEVTEYFHGNAAKEEAHPFRIFMIVRDFLAILDHVCKEVGKMQER 847 (885)
Q Consensus 771 d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~~YFGEd~~k~e~~P~efF~il~dFl~~ldka~kE~~k~~er 847 (885)
|++. .+..=+.+++.++...+.++..+-+..++=+..|.++- -.+|=..|.+|+...-++.+|+-+.+|.
T Consensus 159 dK~~-~a~~Ev~e~e~k~~~a~~~fe~is~~ik~El~rFe~er------~~Dfk~~v~~fles~ie~qke~ie~We~ 228 (234)
T cd07665 159 DKLQ-QAKDEIAEWESRVTQYERDFERISATVRKEVIRFEKEK------SKDFKNHIIKYLETLLHSQQQLVKYWEA 228 (234)
T ss_pred hHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3443 34444666777777788888777777776666775432 2356667999999999988888777664
No 194
>TIGR03778 VPDSG_CTERM VPDSG-CTERM exosortase interaction domain. Through in silico analysis, we previously described the PEP-CTERM/exosortase system (PubMed:16930487). This model describes a PEP-CTERM-like variant C-terminal protein sorting signal, as found at the C-terminus of twenty otherwise unrelated proteins in Verrucomicrobiae bacterium DG1235. The variant motif, VPDSG, seems an intermediate between the VPEP motif (TIGR02595) of typical exosortase systems and the classical LPXTG of sortase in Gram-positive bacteria.
Probab=22.78 E-value=90 Score=22.89 Aligned_cols=19 Identities=26% Similarity=0.272 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHhhhhcc
Q 038630 126 IVTLGMLSALAFFLYRHRV 144 (885)
Q Consensus 126 ~~~~~~~~~~~~f~~~~r~ 144 (885)
-++++.+++++++.+|||.
T Consensus 7 T~~Ll~~~l~~l~~~rRr~ 25 (26)
T TIGR03778 7 TLALLGLGLLGLLGLRRRX 25 (26)
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 3456677778888877764
No 195
>PF12455 Dynactin: Dynein associated protein ; InterPro: IPR022157 This domain family is found in eukaryotes, and is approximately 280 amino acids in length. The family is found in association with PF01302 from PFAM. There is a single completely conserved residue E that may be functionally important. Dynactin has been associated with Dynein, a kinesin protein which is involved in organelle transport, mitotic spindle assembly and chromosome segregation. Dynactin anchors Dynein to specific subcellular structures.
Probab=22.60 E-value=1.9e+02 Score=32.03 Aligned_cols=27 Identities=15% Similarity=0.354 Sum_probs=18.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 038630 821 FRIFMIVRDFLAILDHVCKEVGKMQER 847 (885)
Q Consensus 821 ~efF~il~dFl~~ldka~kE~~k~~er 847 (885)
.+||..+.+.....+.+..-.+|+.+|
T Consensus 247 ~~~~~~l~~l~~~~~~~k~~~~Ki~R~ 273 (274)
T PF12455_consen 247 SELFKLLQDLITQARSAKQACKKIRRR 273 (274)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 357888887777777766666666554
No 196
>KOG0216 consensus RNA polymerase I, second largest subunit [Transcription]
Probab=22.51 E-value=2.4e+02 Score=36.04 Aligned_cols=33 Identities=18% Similarity=0.280 Sum_probs=23.4
Q ss_pred hcHHHHHHHHHHHhhcccccc-CCCCCceeeeec
Q 038630 631 NSRLFLKLLEAVLKTGNRMNV-GTNRGDAKAFKL 663 (885)
Q Consensus 631 ~S~~L~~lL~~VLaiGN~LN~-gt~rG~A~GFkL 663 (885)
.+...-+-|++.|+.||..-. |-.-.+..||.+
T Consensus 408 ~~~~Ig~~me~fLsTGnl~s~sgldLqQ~sG~tv 441 (1111)
T KOG0216|consen 408 TNGNIGRKMEYFLSTGNLVSRSGLDLQQTSGYTV 441 (1111)
T ss_pred ccccHHHHHHHHHhcCCeeeccchhhHhhcCcEE
Confidence 445666778999999998754 334557788865
No 197
>TIGR01495 ETRAMP Plasmodium ring stage membrane protein ETRAMP. These genes have been shown to be found in the sub-telomeric regions of both P. falciparum and P. yoelii chromosomes.
Probab=22.43 E-value=93 Score=28.81 Aligned_cols=30 Identities=7% Similarity=0.035 Sum_probs=17.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhccCCC
Q 038630 118 VAIAISVGIVTLGMLSALAFFLYRHRVKHP 147 (885)
Q Consensus 118 ~~iai~~~~~~~~~~~~~~~f~~~~r~~~~ 147 (885)
+.|+.+++.+|+++-+++++-+|.+|.+..
T Consensus 52 i~iS~ias~la~lv~t~~G~g~y~~~kk~~ 81 (85)
T TIGR01495 52 ILYSSIASGLALLVGAGVGLGYYYKKKNKD 81 (85)
T ss_pred eehHHHHHHHHHHHHHHHHHhhhhhccccc
Confidence 666655555555555666666665555444
No 198
>PF10147 CR6_interact: Growth arrest and DNA-damage-inducible proteins-interacting protein 1; InterPro: IPR018472 Members of this family of proteins act as negative regulators of G1 to S cell cycle phase progression by inhibiting cyclin-dependent kinases. Inhibitory effects are additive with GADD45 proteins but occur also in the absence of GADD45 proteins. Furthermore, they act as a repressor of the orphan nuclear receptor NR4A1 by inhibiting AB domain-mediated transcriptional activity []. They may be involved in the hormone-mediated regulation of NR4A1 transcriptional activity.; GO: 0007049 cell cycle, 0005634 nucleus
Probab=22.41 E-value=1e+03 Score=25.87 Aligned_cols=67 Identities=21% Similarity=0.183 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhccCCCccccCChhhhHHHHHHHHHHHHHHHHHHHH
Q 038630 774 FHSMKMFLKEAEEEIARIKADE----RMALSLVKEVTEYFHGNAAKEEAHPFRIFMIVRDFLAILDHVCKEVGK 843 (885)
Q Consensus 774 ~e~m~~Fl~~Ae~ei~~L~~~~----~~a~~~~kel~~YFGEd~~k~e~~P~efF~il~dFl~~ldka~kE~~k 843 (885)
..+|-.++.+-..++...+... .....+..++.+|||-..+.. + .+|=..|.+.-..-.+..|+.++
T Consensus 130 M~Kmpk~i~e~~~~~~kk~~~~~~~k~rkerl~eEvre~fGy~vDpr--d-prF~eml~~kEkeeKKk~K~aKk 200 (217)
T PF10147_consen 130 MAKMPKWIAEWKAKIAKKEAKAQAAKERKERLIEEVREHFGYKVDPR--D-PRFQEMLQEKEKEEKKKKKEAKK 200 (217)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcCCCC--C-hHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777776666544433 344567788999999753321 1 24545555555555555555544
No 199
>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.
Probab=22.31 E-value=7.7e+02 Score=27.20 Aligned_cols=14 Identities=21% Similarity=0.295 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHH
Q 038630 782 KEAEEEIARIKADE 795 (885)
Q Consensus 782 ~~Ae~ei~~L~~~~ 795 (885)
++|+.+++..++.+
T Consensus 170 e~a~~k~E~~kD~~ 183 (246)
T cd07618 170 DEAGNKVEQCKDQL 183 (246)
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555444443
No 200
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=22.28 E-value=4.8e+02 Score=29.66 Aligned_cols=23 Identities=4% Similarity=0.101 Sum_probs=13.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHH
Q 038630 740 DSDVLSSYVMKLEMGLEKVRLVL 762 (885)
Q Consensus 740 dld~L~~dv~kLe~gl~kv~~~L 762 (885)
++.+...+|.++++.++.++..+
T Consensus 82 si~~q~~~i~~l~~~i~~l~~~i 104 (301)
T PF06120_consen 82 SIAAQKRAIEDLQKKIDSLKDQI 104 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666555544
No 201
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=22.19 E-value=9.4e+02 Score=25.50 Aligned_cols=53 Identities=19% Similarity=0.254 Sum_probs=34.6
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHH
Q 038630 736 AAGMDSDVLSSYVMKLEMGLEKVRLVLQYEKPDMQGKFFHSMKMFLKEAEEEIA 789 (885)
Q Consensus 736 AAkvdld~L~~dv~kLe~gl~kv~~~Lq~~~~~~~d~F~e~m~~Fl~~Ae~ei~ 789 (885)
+-+.|+..|.++|..|++.++++-+.|+... ...|...+.+.+-++.-.+++.
T Consensus 111 ~~~~~v~~~~q~~~~l~~K~D~~L~llE~~~-~~~~~~~~~~~~~~~~~~~~~~ 163 (189)
T TIGR02132 111 ALKKDVTKLKQDIKSLDKKLDKILELLEGQQ-KTQDELKETIQKQIKTQGEQLQ 163 (189)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHhcCc-cchhHHHHHHHHHHhhhHHHHH
Confidence 3456778888888888887777766554332 2356777777766665554443
No 202
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=21.97 E-value=1.1e+03 Score=29.06 Aligned_cols=17 Identities=24% Similarity=0.526 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 038630 777 MKMFLKEAEEEIARIKA 793 (885)
Q Consensus 777 m~~Fl~~Ae~ei~~L~~ 793 (885)
+-.|.++..+++..|..
T Consensus 323 l~~~~~~~~~el~~L~~ 339 (557)
T COG0497 323 LLEYLDKIKEELAQLDN 339 (557)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 33444444444444433
No 203
>PF10112 Halogen_Hydrol: 5-bromo-4-chloroindolyl phosphate hydrolysis protein; InterPro: IPR018770 This entry consists of prokaryotic proteins that mediate the hydrolysis of 5-bromo-4-chloroindolyl phosphate bonds.
Probab=21.91 E-value=9.1e+02 Score=25.11 Aligned_cols=23 Identities=17% Similarity=0.137 Sum_probs=12.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 038630 821 FRIFMIVRDFLAILDHVCKEVGK 843 (885)
Q Consensus 821 ~efF~il~dFl~~ldka~kE~~k 843 (885)
.++-..+.++...++..++.+++
T Consensus 156 ~~~~~~l~e~~~~L~~l~~~f~~ 178 (199)
T PF10112_consen 156 EEIKQSLEEIEETLDTLNQAFEK 178 (199)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555544444
No 204
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=21.89 E-value=7.6e+02 Score=30.63 Aligned_cols=119 Identities=16% Similarity=0.183 Sum_probs=0.0
Q ss_pred hchhhhcccccchhhhhh--hcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 038630 718 QGLEVVSGLSRDLSNVKK--AAGMDSDVLSSYVMKLEMGLEKVRLVLQYEKPDMQGKFFHSMKMFLKEAEEEIARIKADE 795 (885)
Q Consensus 718 ~gl~~V~~l~~EL~~V~k--AAkvdld~L~~dv~kLe~gl~kv~~~Lq~~~~~~~d~F~e~m~~Fl~~Ae~ei~~L~~~~ 795 (885)
+|+..+..+..||..+.+ ...+....+..++.+|++.++.+...++... .=...+..-++.++.++..++..+
T Consensus 179 lGl~~~~~L~~dl~~~~~~~~~~~~~~~~~~~~~~le~el~~l~~~~e~l~-----~~i~~l~~ele~a~~~l~~l~~~~ 253 (650)
T TIGR03185 179 LGLDLIDRLAGDLTNVLRRRKKSELPSSILSEIEALEAELKEQSEKYEDLA-----QEIAHLRNELEEAQRSLESLEKKF 253 (650)
T ss_pred hCcHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHH----------------------HHHhccCCCccccCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 038630 796 RMALSLVKE----------------------VTEYFHGNAAKEEAHPFRIFMIVRDFLAILDHVCKEVGKMQERTMV 850 (885)
Q Consensus 796 ~~a~~~~ke----------------------l~~YFGEd~~k~e~~P~efF~il~dFl~~ldka~kE~~k~~er~~v 850 (885)
......+.+ +..|+++.-. |.++..-+..+.+-.++....+.++.+
T Consensus 254 ~~~GG~~~~~r~~Le~ei~~le~e~~e~~~~l~~l~~~~~p---------~~l~~~ll~~~~~q~~~e~~~~~~~~~ 321 (650)
T TIGR03185 254 RSEGGDLFEEREQLERQLKEIEAARKANRAQLRELAADPLP---------LLLIPNLLDSTKAQLQKEEQSQQNQLT 321 (650)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC---------HhhhHHHHHHHHHHHHHHHHHHHHHHH
No 205
>cd07632 BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. Both APPL proteins interact with the transcriptional repressor Reptin, acting as activators of beta-catenin/TCF-mediated trancription. APPL2 is essential for cell proliferation. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interac
Probab=21.80 E-value=1e+03 Score=25.77 Aligned_cols=45 Identities=11% Similarity=0.040 Sum_probs=33.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcc
Q 038630 771 GKFFHSMKMFLKEAEEEIARIKADERMALSLVKEVTEYFHGNAAK 815 (885)
Q Consensus 771 d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~~YFGEd~~k 815 (885)
+.+...|..|+++--.+++..++.+.++-+.+...+.-+..-+++
T Consensus 90 ~sl~~pL~~F~KeDl~~vKe~KK~FdK~Se~~d~AL~Knaqlskk 134 (215)
T cd07632 90 DTMVLPIIQFREKDLTEVSTLKDLFGIASNEHDLSMAKYSRLPKK 134 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCCcC
Confidence 466778888888888888888888888877777766665554443
No 206
>PF15345 TMEM51: Transmembrane protein 51
Probab=21.78 E-value=67 Score=34.88 Aligned_cols=32 Identities=9% Similarity=0.050 Sum_probs=23.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhccCCCCC
Q 038630 118 VAIAISVGIVTLGMLSALAFFLYRHRVKHPGE 149 (885)
Q Consensus 118 ~~iai~~~~~~~~~~~~~~~f~~~~r~~~~~~ 149 (885)
..||..+|-+-+++|-|++|+-+|.||+++..
T Consensus 58 ~SVAyVLVG~Gv~LLLLSICL~IR~KRr~rq~ 89 (233)
T PF15345_consen 58 FSVAYVLVGSGVALLLLSICLSIRDKRRRRQG 89 (233)
T ss_pred EEEEEehhhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 77777777777777878888888777766543
No 207
>KOG2528 consensus Sorting nexin SNX9/SH3PX1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.77 E-value=1.3e+02 Score=35.55 Aligned_cols=25 Identities=12% Similarity=0.190 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCcc
Q 038630 791 IKADERMALSLVKEVTEYFHGNAAK 815 (885)
Q Consensus 791 L~~~~~~a~~~~kel~~YFGEd~~k 815 (885)
|.+....+-..|+++.+.|+|.+++
T Consensus 393 L~~ai~~~g~~y~~Ig~lfa~qpk~ 417 (490)
T KOG2528|consen 393 LNEAIGLTGDAYHEIGELFAEQPKQ 417 (490)
T ss_pred hhhhhhhhhHHHHHHHHHhhccccc
Confidence 4444555677899999999988765
No 208
>KOG2773 consensus Apoptosis antagonizing transcription factor/protein transport protein [Transcription; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.60 E-value=1.5e+03 Score=27.42 Aligned_cols=98 Identities=24% Similarity=0.256 Sum_probs=56.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccCChhhh-HHHHHHHHHHHHHHHHHHHHHhhhh
Q 038630 770 QGKFFHSMKMFLKEAEEEIARIKADERMALSLVKEVTEYFHGNAAKEEAHPFRI-FMIVRDFLAILDHVCKEVGKMQERT 848 (885)
Q Consensus 770 ~d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~~YFGEd~~k~e~~P~ef-F~il~dFl~~ldka~kE~~k~~er~ 848 (885)
+++|...|..|.......-..+..--.+++..|...+..+.+..... +.-+.+ |.++. ++.....+.+++.+|+
T Consensus 275 ~~~~~~~l~~~~~~i~sl~~~~~~yrN~~L~KW~dkt~~~sg~a~~~-~~kf~~~~~i~~----Qi~~~l~d~erl~~rt 349 (483)
T KOG2773|consen 275 SGKFKRSLKEFSLEINSLDFFLLEYRNKVLRKWHDKTQLASGGAAPK-CKKFLIPFSINF----QIEHFLDDPERLVKRT 349 (483)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccc-chhhhccchHHH----HHHHHhhCHHHHHHHh
Confidence 45788888888777666655565555678888888888887765432 221222 33333 4445555566666664
Q ss_pred hccCCcccc----cCCCCccccccccccc
Q 038630 849 MVGSARSFR----ISATASLPVLNRYNVR 873 (885)
Q Consensus 849 ~v~~~r~f~----~~~~~~~~~~~~~~~~ 873 (885)
... -|+|. .|.++..+|=..+-.+
T Consensus 350 q~~-r~~~~v~~~~pe~a~~~vpen~~~~ 377 (483)
T KOG2773|consen 350 QTM-RRKFSVLARFPENAQKPVPENKPGE 377 (483)
T ss_pred hhc-cccccccccCcchhccCCcccCCCC
Confidence 332 14443 4556666444333333
No 209
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=21.55 E-value=1.8e+03 Score=28.67 Aligned_cols=36 Identities=22% Similarity=0.165 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhhccccccC
Q 038630 614 YLRKSYQTLEAASEELKNSRLFLKLLEAVLKTGNRMNVG 652 (885)
Q Consensus 614 ~l~~~l~~l~~A~~eLr~S~~L~~lL~~VLaiGN~LN~g 652 (885)
+|....+.|..-|.+|- .|..=+...|+=.|.+|..
T Consensus 163 eIf~~~~~L~nk~~~lt---~~~~q~~tkl~e~~~en~~ 198 (1265)
T KOG0976|consen 163 DIFMIGEDLHDKNEELN---EFNMEFQTKLAEANREKKA 198 (1265)
T ss_pred HHHHHHHHHhhhhhHHh---HHHHHHHHHHHHHHHHHHH
Confidence 33344444444444442 3444455556656666644
No 210
>PHA00728 hypothetical protein
Probab=21.45 E-value=2.2e+02 Score=28.09 Aligned_cols=26 Identities=15% Similarity=0.230 Sum_probs=18.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhc
Q 038630 740 DSDVLSSYVMKLEMGLEKVRLVLQYE 765 (885)
Q Consensus 740 dld~L~~dv~kLe~gl~kv~~~Lq~~ 765 (885)
++++|..+-.+|++.|.+++..+...
T Consensus 6 eveql~keneelkkkla~leal~nn~ 31 (151)
T PHA00728 6 EVEQLKKENEELKKKLAELEALMNNE 31 (151)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHcCC
Confidence 45677777788888887777666544
No 211
>PF10376 Mei5: Double-strand recombination repair protein ; InterPro: IPR018468 Mei5 is one of a pair of meiosis-specific proteins which facilitate the loading of Dmc1 on to Rad51 on DNA at double-strand breaks during recombination. Recombination is carried out by a large protein complex based around the two RecA homologues, Rad51 and Dmc1 []. This complex may play both a catalytic and a structural role in the interaction between homologous chromosomes during meiosis. Mei5 is seen to contain a coiled-coli region.
Probab=21.44 E-value=3.1e+02 Score=29.70 Aligned_cols=70 Identities=16% Similarity=0.183 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHhccCCC
Q 038630 744 LSSYVMKLEMGLEKVRLVLQYEKPDMQGKFFHSMKMFLKEAEEEIARIKADERM-ALS--LVKEVTEYFHGNA 813 (885)
Q Consensus 744 L~~dv~kLe~gl~kv~~~Lq~~~~~~~d~F~e~m~~Fl~~Ae~ei~~L~~~~~~-a~~--~~kel~~YFGEd~ 813 (885)
|..++.+.+..|.++..+-+...++....+...+.+|-..+...+..|+..+.+ -.. ...+|+.+||-|.
T Consensus 143 L~~q~~e~~e~lr~L~~~k~~r~Kn~~~~Lq~lI~Kwr~~~q~~l~eL~~~~~~~e~~~~TM~eL~~~l~ID~ 215 (221)
T PF10376_consen 143 LEKQVDEKEEELRRLKLVKQYRSKNDLEQLQSLIKKWRSASQEALYELQSEMSEEEGEKFTMGELIKRLGIDY 215 (221)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCccHHHHHHHhCCCc
Confidence 344444455555555444433322223466777777777777777777765544 111 3557777777654
No 212
>PF12806 Acyl-CoA_dh_C: Acetyl-CoA dehydrogenase C-terminal like
Probab=21.43 E-value=3.4e+02 Score=26.26 Aligned_cols=59 Identities=25% Similarity=0.390 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhccCCCccccCChhhhHHHHHHHHHHH
Q 038630 773 FFHSMKMFLKEAEE----EIARIKADERMALSLVKEVTEYFHGNAAKEEAHPFRIFMIVRDFLAIL 834 (885)
Q Consensus 773 F~e~m~~Fl~~Ae~----ei~~L~~~~~~a~~~~kel~~YFGEd~~k~e~~P~efF~il~dFl~~l 834 (885)
|.+.|..|++++.. .+..+.+.+.++.+.+.+++.++.+.... ++..+...=.+|+..+
T Consensus 2 l~~eI~~~~~~~~~~~~~~l~~~~~~L~~a~~~l~~~t~~l~~~~~~---~~~~~~a~A~~yL~~~ 64 (130)
T PF12806_consen 2 LLAEIQAFIAEAAASGDPELAALAAALQQALEALREATAWLLAQAAA---DPELAGAAAVDYLMLF 64 (130)
T ss_pred HHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhC---CHHHHHhhHHHHHHHH
Confidence 34556666666543 55555666666666777777776654332 3444444444444443
No 213
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=21.41 E-value=6.8e+02 Score=24.77 Aligned_cols=34 Identities=12% Similarity=0.115 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038630 772 KFFHSMKMFLKEAEEEIARIKADERMALSLVKEV 805 (885)
Q Consensus 772 ~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel 805 (885)
...+.+..=.+..+.+|+.|+...+...+.|+++
T Consensus 70 ~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eL 103 (119)
T COG1382 70 EAVDELEERKETLELRIKTLEKQEEKLQERLEEL 103 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555566666666666655555544
No 214
>KOG4025 consensus Putative apoptosis related protein [Function unknown]
Probab=21.40 E-value=3.3e+02 Score=28.42 Aligned_cols=88 Identities=14% Similarity=0.105 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccCChhhhHH
Q 038630 746 SYVMKLEMGLEKVRLVLQYEKPDMQGKFFHSMKMFLKEAEEEIARIKADERMALSLVKEVTEYFHGNAAKEEAHPFRIFM 825 (885)
Q Consensus 746 ~dv~kLe~gl~kv~~~Lq~~~~~~~d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~~YFGEd~~k~e~~P~efF~ 825 (885)
+++++|.+.-..++..|....++.+|+ ..|++..+.--..+++.++.+++.|+-+ -| -..++.+ -.-.+|-.
T Consensus 93 ~~fqeLn~ka~aLk~iLSriPdEinDR-----~~FLeTIK~IASaIKkLLd~vN~v~~~~-p~-t~~~AvE-~rKkEFVk 164 (207)
T KOG4025|consen 93 QDFQELNKKAIALKRILSRIPDEINDR-----HAFLETIKLIASAIKKLLDAVNAVYRIV-PL-TAQPAVE-KRKKEFVK 164 (207)
T ss_pred ccHHHHHHHHHHHHHHHHhCcHhhhhH-----HHHHHHHHHHHHHHHHHHHHHHHHHhhc-cc-cccHHHH-HHHHHHHH
Confidence 345555555555566665554443332 2344444444444555555555444332 22 2222322 23357778
Q ss_pred HHHHHHHHHHHHHHHH
Q 038630 826 IVRDFLAILDHVCKEV 841 (885)
Q Consensus 826 il~dFl~~ldka~kE~ 841 (885)
.-+.|...|+...||=
T Consensus 165 YSK~FS~TLKtYFKdG 180 (207)
T KOG4025|consen 165 YSKRFSNTLKTYFKDG 180 (207)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 8888888888888873
No 215
>PF00913 Trypan_glycop: Trypanosome variant surface glycoprotein (A-type); InterPro: IPR001812 The trypanosome parasite expresses these proteins to evade the immune response []. The variant surface glycoprotein (VSG) of Trypanosoma brucei forms a coat on the surface of the parasite; by the expression of a series of antigenically distinct VSGs in the surface coat the parasite escapes the host immune response. The 2.9A resolution crystal structure of the N-terminal domain of one variant, MITat 1.2, has been determined []. The "top" of the protein, which in the surface coat may be exposed to the external environment, is formed from the ends of the two long helices, a short three-stranded beta-sheet, and a strand having irregular conformation that packs above these secondary structure elements. Two conserved disulphide bridges are in this part of the molecule. Several elements of the MITat 1.2 sequence, which contribute to the formation of the helix bundle structure, have been identified. These elements can be found in the sequences of several different VSGs, suggesting that to some extent the VSG structure is conserved in those variants [].; GO: 0020012 evasion or tolerance of host immune response; PDB: 1VSG_A 2VSG_B.
Probab=21.17 E-value=1.9e+02 Score=32.48 Aligned_cols=68 Identities=15% Similarity=0.110 Sum_probs=40.9
Q ss_pred hhhcccccchhhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHH
Q 038630 721 EVVSGLSRDLSNVKKAAGMDSDVLSSYVMKLEMGLEKVRLVLQYEKPDMQGKFFHSMKMFLKEAEEEI 788 (885)
Q Consensus 721 ~~V~~l~~EL~~V~kAAkvdld~L~~dv~kLe~gl~kv~~~Lq~~~~~~~d~F~e~m~~Fl~~Ae~ei 788 (885)
..|++++.+|..|...+.-.++.+...+.++++...+++-.+..........-...+..++..+...+
T Consensus 28 ~~lC~ls~~Lk~~a~~a~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~la~~~~~~~~~~ 95 (370)
T PF00913_consen 28 KPLCGLSAELKKVAARAATKLQAALTAAEAAEKAALRARIYAAAAAGANEAKAAAALAAAARKAAAAA 95 (370)
T ss_dssp HHHHHHHHHCTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHHHHHH
Confidence 45788899999988877777777777777777666665544443322222233444555544433333
No 216
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=21.03 E-value=1.5e+03 Score=29.01 Aligned_cols=62 Identities=11% Similarity=0.243 Sum_probs=31.9
Q ss_pred CCCChHHHHHHHHhCcccHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHhcHHHHHHHHHH
Q 038630 577 LKLGSAERFLKAVLDIPFAFKRVEAMLYRANFDAEVKY-LRKSYQTLEAASEELKNSRLFLKLLEAV 642 (885)
Q Consensus 577 ~~L~~aEqFl~~L~~IP~l~~RL~allfk~~F~~~v~~-l~~~l~~l~~A~~eLr~S~~L~~lL~~V 642 (885)
.+|....+-+..+.++|.|..|-..|- .|.++++. +.+.|..-.... .+-..+.|..||..|
T Consensus 151 ~~l~~m~~sL~~l~~~pd~~~r~~~le---~l~nrLEa~vsp~Lv~al~~~-~~~~~~~~~~if~~i 213 (766)
T PF10191_consen 151 DRLAEMQRSLAVLQDVPDYEERRQQLE---ALKNRLEALVSPQLVQALNSR-DVDAAKEYVKIFSSI 213 (766)
T ss_pred HHHHHHHHHHHHHcCCCchhHHHHHHH---HHHHHHHHHhhHHHHHHHHhc-CHHHHHHHHHHHHHc
Confidence 566666677777777887776655443 34444433 223333222222 233445555555544
No 217
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=20.99 E-value=8.8e+02 Score=24.57 Aligned_cols=57 Identities=12% Similarity=0.123 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038630 741 SDVLSSYVMKLEMGLEKVRLVLQYEKPDMQGKFFHSMKMFLKEAEEEIARIKADERMALSLVKEVTE 807 (885)
Q Consensus 741 ld~L~~dv~kLe~gl~kv~~~Lq~~~~~~~d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~~ 807 (885)
+.+|..++..|+..+..++.++........ .++....|..|+.+...+.+....+..
T Consensus 81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t----------~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 81 IKELREELAELKKEVKSLEAELASLSSEPT----------NEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666677777776666666654331111 124445555566655555555555554
No 218
>KOG0251 consensus Clathrin assembly protein AP180 and related proteins, contain ENTH domain [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.94 E-value=9.1e+02 Score=29.33 Aligned_cols=12 Identities=25% Similarity=0.512 Sum_probs=7.0
Q ss_pred chhcccccccCC
Q 038630 665 TLLKLVDIKGTD 676 (885)
Q Consensus 665 SL~KL~dtKs~D 676 (885)
.+.+|.++++..
T Consensus 105 ~~l~lS~F~d~s 116 (491)
T KOG0251|consen 105 LILNLSDFRDKS 116 (491)
T ss_pred cccchhhhhccc
Confidence 556666666543
No 219
>PRK10884 SH3 domain-containing protein; Provisional
Probab=20.91 E-value=4.5e+02 Score=28.13 Aligned_cols=19 Identities=21% Similarity=0.128 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 038630 742 DVLSSYVMKLEMGLEKVRL 760 (885)
Q Consensus 742 d~L~~dv~kLe~gl~kv~~ 760 (885)
..+++++.+|+..++.+..
T Consensus 96 p~le~el~~l~~~l~~~~~ 114 (206)
T PRK10884 96 PDLENQVKTLTDKLNNIDN 114 (206)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3444455555555444443
No 220
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=20.87 E-value=9.3e+02 Score=24.80 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=18.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHh
Q 038630 822 RIFMIVRDFLAILDHVCKEVGKMQ 845 (885)
Q Consensus 822 efF~il~dFl~~ldka~kE~~k~~ 845 (885)
.+|..+.+.+..++....++..+.
T Consensus 170 ~~~~~~~~~~~~l~~~l~~l~~~~ 193 (204)
T PF04740_consen 170 SIFSEIEELLQALQSGLSQLQSMW 193 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 468888888888888887777654
No 221
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=20.84 E-value=3.2e+02 Score=33.13 Aligned_cols=34 Identities=12% Similarity=0.128 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 038630 778 KMFLKEAEEEIARIKADERMALSLVKEVTEYFHG 811 (885)
Q Consensus 778 ~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~~YFGE 811 (885)
...+..+.+.-+.++++++++..+|.+++..|+|
T Consensus 260 ~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~E 293 (596)
T KOG4360|consen 260 DEHLQAYKDAQRQLTAELEELEDKYAECMQMLHE 293 (596)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444455555544443
No 222
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=20.45 E-value=1.5e+03 Score=27.04 Aligned_cols=103 Identities=12% Similarity=0.066 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhccCCCc-cc
Q 038630 741 SDVLSSYVMKLEMGLEKVRLVLQYEKPDMQGKFFHSMKMFLKEAEEEIARIKADE---RMALSLVKEVTEYFHGNAA-KE 816 (885)
Q Consensus 741 ld~L~~dv~kLe~gl~kv~~~Lq~~~~~~~d~F~e~m~~Fl~~Ae~ei~~L~~~~---~~a~~~~kel~~YFGEd~~-k~ 816 (885)
...|..+++++++++..++.++.... .=..++..=|++.+..+..|+.+. ...+..+-..+.++|.++. ..
T Consensus 61 ~~kL~~~lk~~e~~i~~~~~ql~~s~-----~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L~A~~r~g~~p~~~l 135 (420)
T COG4942 61 RAKLEKQLKSLETEIASLEAQLIETA-----DDLKKLRKQIADLNARLNALEVQEREQRRRLAEQLAALQRSGRNPPPAL 135 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----hHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchh
Q ss_pred cCChhhhH--HHHHHHHHHHHHHHHHHHHHhhhh
Q 038630 817 EAHPFRIF--MIVRDFLAILDHVCKEVGKMQERT 848 (885)
Q Consensus 817 e~~P~efF--~il~dFl~~ldka~kE~~k~~er~ 848 (885)
-..+++.- .-+.-.+..+..+..|.-+.-+++
T Consensus 136 l~~~eda~~~~R~ai~~~~l~~~~~~~i~~l~~~ 169 (420)
T COG4942 136 LVSPEDAQRSVRLAIYYGALNPARAERIDALKAT 169 (420)
T ss_pred hcChhhhhHHHHHHHHHHHhhHHHHHHHHHHHHH
No 223
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=20.30 E-value=7e+02 Score=26.86 Aligned_cols=97 Identities=15% Similarity=0.170 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cCCCccccCChh
Q 038630 746 SYVMKLEMGLEKVRLVLQYEKPDMQGKFFHSMKMFLKEAEEEIARIKADERMALSLVKEVTEYF----HGNAAKEEAHPF 821 (885)
Q Consensus 746 ~dv~kLe~gl~kv~~~Lq~~~~~~~d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~~YF----GEd~~k~e~~P~ 821 (885)
+.|..+|.+++++.+ .++..++.+..-++.+++.......-...|.+|. |+....++..-.
T Consensus 2 ~~l~~~E~~le~~~k---------------~ik~liK~~k~~i~A~k~~~~a~~~Fa~sL~~f~~~~~gd~~~dDe~~I~ 66 (207)
T cd07636 2 ERLKSHEAELDKTNK---------------FIKELIKDGKSLIAALKNLSSAKRKFADSLNEFKFQCIGDAETDDEICIA 66 (207)
T ss_pred chHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccHHHHH
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcccc
Q 038630 822 RIFMIVRDFLAILDHVCKEVGKMQERTMVGSARSFR 857 (885)
Q Consensus 822 efF~il~dFl~~ldka~kE~~k~~er~~v~~~r~f~ 857 (885)
+-+.-|.+.+..+...+..+-..-++.++.-...|.
T Consensus 67 ~~L~kF~~~L~ei~~~r~~L~~qa~~~l~~~L~~F~ 102 (207)
T cd07636 67 RSLQEFAAVLRNLEDERTRMIENASEVLITPLEKFR 102 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 224
>PRK09039 hypothetical protein; Validated
Probab=20.22 E-value=6.4e+02 Score=28.93 Aligned_cols=27 Identities=15% Similarity=0.252 Sum_probs=18.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 038630 740 DSDVLSSYVMKLEMGLEKVRLVLQYEK 766 (885)
Q Consensus 740 dld~L~~dv~kLe~gl~kv~~~Lq~~~ 766 (885)
++.-|.++|..|+..+..++..|...+
T Consensus 138 ~V~~L~~qI~aLr~Qla~le~~L~~ae 164 (343)
T PRK09039 138 QVELLNQQIAALRRQLAALEAALDASE 164 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777777777777665543
No 225
>PHA02562 46 endonuclease subunit; Provisional
Probab=20.18 E-value=9.6e+02 Score=28.67 Aligned_cols=15 Identities=27% Similarity=0.357 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHH
Q 038630 781 LKEAEEEIARIKADE 795 (885)
Q Consensus 781 l~~Ae~ei~~L~~~~ 795 (885)
+..++.++..++..+
T Consensus 257 L~~l~~~~~~~~~~l 271 (562)
T PHA02562 257 LNKLNTAAAKIKSKI 271 (562)
T ss_pred HHHHHHHHHHHHHHH
Confidence 445555555555444
No 226
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms]
Probab=20.17 E-value=1.2e+02 Score=35.97 Aligned_cols=38 Identities=11% Similarity=0.136 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchhhhHHHHHHHHH
Q 038630 78 GQSQDQNQPPPATTPATPSSSSNGSIPIPAATQPAKPAKKVAIAISVGIVTL 129 (885)
Q Consensus 78 ~~~~~~pppp~p~~~~~~~pa~~ss~~~p~~~~~~~~~~k~~iai~~~~~~~ 129 (885)
|-+|||||+|||+.| .+|+.-. ......++ ++|+.+-|
T Consensus 234 g~PPPPPP~PPp~~~----~~~~~~~--~~~~~k~~--------~~AlFaql 271 (480)
T KOG2675|consen 234 GAPPPPPPAPPPAPF----FADSNPP--SSDANKGG--------RGALFAQL 271 (480)
T ss_pred CCCCCCCCCCCCccc----ccccCCC--Cccccccc--------HHHHHHHH
No 227
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=20.14 E-value=4.1e+02 Score=34.88 Aligned_cols=104 Identities=14% Similarity=0.104 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhccC
Q 038630 741 SDVLSSYVMKLEMGLEKVRLVLQYEKPDMQGKF------FHSMKMFLKEAEEEIARIKADERMALSLVK---EVTEYFHG 811 (885)
Q Consensus 741 ld~L~~dv~kLe~gl~kv~~~Lq~~~~~~~d~F------~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~k---el~~YFGE 811 (885)
+.++..++.+|+++|...++--...- +.++| +..|..-+++-+.+++.++..++...+.|. ++....-+
T Consensus 406 lKd~~~EIerLK~dl~AaReKnGvyi--see~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~ 483 (1041)
T KOG0243|consen 406 LKDLYEEIERLKRDLAAAREKNGVYI--SEERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKE 483 (1041)
T ss_pred HHHHHHHHHHHHHHHHHhHhhCceEe--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q ss_pred CCccccCChhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 038630 812 NAAKEEAHPFRIFMIVRDFLAILDHVCKEVGKMQE 846 (885)
Q Consensus 812 d~~k~e~~P~efF~il~dFl~~ldka~kE~~k~~e 846 (885)
.-.+.+......-..+.++...+.++...+++..+
T Consensus 484 ~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ 518 (1041)
T KOG0243|consen 484 EKEKLKSKLQNKNKELESLKEELQQAKATLKEEEE 518 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!