Query 038630
Match_columns 885
No_of_seqs 218 out of 1034
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 22:43:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038630.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038630hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j1d_G DAAM1, disheveled-assoc 100.0 5E-73 1.7E-77 650.9 40.9 374 441-844 8-398 (483)
2 3obv_E Protein diaphanous homo 100.0 4.7E-72 1.6E-76 638.0 40.2 375 441-844 3-386 (457)
3 4eah_A Formin-like protein 3, 100.0 3.7E-72 1.3E-76 630.1 38.5 370 441-847 12-386 (402)
4 1ux5_A BNI1 protein; structura 100.0 7E-69 2.4E-73 605.3 25.3 368 442-848 3-405 (411)
5 1v9d_A Diaphanous protein homo 100.0 1.8E-65 6E-70 564.7 33.4 311 507-846 5-317 (340)
6 2ks1_B Epidermal growth factor 92.6 0.16 5.4E-06 40.0 4.9 30 118-147 13-42 (44)
7 2l2t_A Receptor tyrosine-prote 91.7 0.19 6.5E-06 39.5 4.3 33 115-147 7-41 (44)
8 2k1k_A Ephrin type-A receptor 88.0 0.58 2E-05 35.6 4.2 20 124-143 19-38 (38)
9 2jwa_A Receptor tyrosine-prote 86.7 0.72 2.5E-05 36.2 4.2 27 119-146 14-41 (44)
10 2l9u_A Receptor tyrosine-prote 84.3 0.87 3E-05 33.9 3.4 29 119-147 9-37 (40)
11 2k9y_A Ephrin type-A receptor 81.6 1.2 4E-05 34.0 3.4 29 115-143 10-39 (41)
12 2q12_A DIP13 alpha, DCC-intera 79.2 27 0.00094 36.2 14.2 57 589-651 13-74 (265)
13 4hpq_C ATG17, KLTH0D15642P; au 77.5 95 0.0033 35.0 18.6 64 740-808 236-299 (413)
14 2q13_A DCC-interacting protein 66.2 1.5E+02 0.0052 32.2 19.0 53 589-647 13-70 (385)
15 2hfi_A Hypothetical protein YP 64.3 63 0.0021 30.9 11.4 52 744-795 6-58 (131)
16 1iij_A ERBB-2 receptor protein 63.9 2.7 9.1E-05 31.5 1.4 22 123-144 14-35 (35)
17 3okq_A BUD site selection prot 57.9 67 0.0023 31.1 10.3 91 742-836 24-114 (141)
18 3ghg_A Fibrinogen alpha chain; 55.6 21 0.00072 41.1 7.5 60 740-804 103-163 (562)
19 2huj_A LIN2004 protein; hypoth 49.9 1.7E+02 0.0059 28.2 11.8 26 770-795 49-74 (140)
20 4h8s_A DCC-interacting protein 47.8 3.1E+02 0.011 29.9 15.8 39 588-632 35-73 (407)
21 2avr_X Adhesion A; antiparalle 47.2 1.9E+02 0.0064 27.2 12.5 85 741-843 4-89 (119)
22 2ets_A Hypothetical protein; s 45.6 93 0.0032 29.6 9.1 66 742-813 18-99 (128)
23 1ez3_A Syntaxin-1A; three heli 45.3 1.8E+02 0.0061 26.4 11.8 35 770-804 45-79 (127)
24 2iub_A CORA, divalent cation t 43.1 1.5E+02 0.0051 32.2 11.8 64 744-807 226-289 (363)
25 3rkg_A Magnesium transporter M 40.8 2.1E+02 0.0072 30.2 12.0 103 742-846 137-241 (261)
26 3okq_A BUD site selection prot 40.7 74 0.0025 30.7 7.6 65 741-805 56-126 (141)
27 3nvo_A Zinc transport protein 40.0 1.7E+02 0.0057 29.9 11.0 65 741-805 189-253 (264)
28 2lw1_A ABC transporter ATP-bin 37.4 95 0.0032 27.2 7.4 59 741-805 24-82 (89)
29 3ck6_A Putative membrane trans 37.4 1.2E+02 0.004 30.9 9.3 60 739-799 171-230 (252)
30 4egw_A Magnesium transport pro 37.3 1.7E+02 0.0057 30.4 10.6 36 772-807 230-265 (280)
31 3oja_B Anopheles plasmodium-re 36.4 74 0.0025 36.4 8.4 41 774-814 546-586 (597)
32 3us6_A Histidine-containing ph 32.8 1.5E+02 0.005 28.6 8.6 25 771-795 40-64 (153)
33 2p22_C Protein SRN2; endosome, 30.8 4.3E+02 0.015 26.6 12.0 50 789-847 131-180 (192)
34 3fav_B ESAT-6, 6 kDa early sec 29.2 1.9E+02 0.0064 24.6 7.9 49 745-793 18-70 (94)
35 3pev_B Nucleoporin GLE1; RECA, 28.0 1E+02 0.0036 33.1 7.2 99 740-843 4-104 (297)
36 4ev6_A Magnesium transport pro 27.7 3E+02 0.01 29.5 10.9 10 681-690 157-166 (339)
37 3zbh_A ESXA; unknown function, 27.2 2.8E+02 0.0097 23.4 8.9 22 770-791 51-72 (99)
38 1deq_A Fibrinogen (alpha chain 27.2 3.6E+02 0.012 30.1 11.2 135 598-793 53-193 (390)
39 2z0v_A SH3-containing GRB2-lik 26.5 85 0.0029 32.2 6.0 25 607-631 12-36 (240)
40 4aj5_1 SKA3, spindle and kinet 26.5 3E+02 0.01 25.2 8.6 54 741-802 44-97 (101)
41 2vs0_A Virulence factor ESXA; 25.5 3E+02 0.01 23.1 10.1 45 790-840 24-68 (97)
42 3sjb_C Golgi to ER traffic pro 25.3 2.9E+02 0.0098 24.9 8.3 60 745-806 22-83 (93)
43 3gwk_C SAG1039, putative uncha 25.1 3.2E+02 0.011 23.3 10.2 41 792-838 28-68 (98)
44 3qfl_A MLA10; coiled-coil, (CC 25.1 3.8E+02 0.013 24.2 10.7 44 742-785 22-65 (115)
45 2vs0_A Virulence factor ESXA; 24.9 3.1E+02 0.011 23.0 10.1 36 770-809 48-83 (97)
46 1vcs_A Vesicle transport throu 24.7 2.3E+02 0.0077 25.5 7.8 60 739-798 31-93 (102)
47 3gwk_C SAG1039, putative uncha 24.1 3.3E+02 0.011 23.2 10.4 22 770-791 50-71 (98)
48 3rh3_A Uncharacterized DUF3829 23.7 2E+02 0.0068 30.5 8.0 77 770-847 136-242 (264)
49 3r84_A Mediator of RNA polymer 22.9 2.2E+02 0.0075 25.3 7.0 23 821-843 43-65 (86)
50 3zbh_A ESXA; unknown function, 22.5 3.5E+02 0.012 22.8 8.5 16 738-753 8-23 (99)
51 4i0x_B ESAT-6-like protein MAB 21.9 2.4E+02 0.0083 24.7 7.4 23 770-792 55-77 (103)
52 2llm_A Amyloid beta A4 protein 26.7 20 0.00069 27.9 0.0 26 118-143 18-43 (43)
53 2nrj_A HBL B protein; enteroto 21.1 2.8E+02 0.0094 30.3 9.0 98 738-843 225-325 (346)
54 2v71_A Nuclear distribution pr 20.7 3E+02 0.01 27.8 8.4 99 744-843 47-148 (189)
55 2fic_A Bridging integrator 1; 20.5 4.6E+02 0.016 26.4 10.2 19 741-759 54-72 (251)
56 2z0v_A SH3-containing GRB2-lik 20.1 6.9E+02 0.023 25.3 15.3 24 608-631 20-43 (240)
57 2lf0_A Uncharacterized protein 20.0 2.7E+02 0.0093 26.1 7.2 48 743-793 7-57 (123)
No 1
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A
Probab=100.00 E-value=5e-73 Score=650.86 Aligned_cols=374 Identities=27% Similarity=0.414 Sum_probs=334.4
Q ss_pred CCCCCccccccccccccccccCCceecccccccc--cCCHHHHHHhhccCCCCCC--------CCCCCC-cC-CCCCCcc
Q 038630 441 TDGAKPKLKALHWDKVRATSDRATVWDQLKSSSF--QLNEDMMESLFGCNSVNSV--------PKEPTT-RK-SVLPPVE 508 (885)
Q Consensus 441 ~~~pK~KlK~LhW~kV~~~~~k~TIW~~l~~~~~--~lD~d~LE~LF~~k~~~~~--------~K~~~~-kk-~v~~~~~ 508 (885)
..+|+.+||+|||++|+..++++|||+++++..+ ++|+++||++|+++..... .++.+. .. ....++.
T Consensus 8 ~~~P~~klK~l~W~ki~~~~~~~TiW~~~~~~~~~~~ld~~~lE~lF~~~~~~~~~~~~~~~~~k~~~s~~~~~~~~kk~ 87 (483)
T 2j1d_G 8 IPQPTNALKSFNWSKLPENKLEGTVWTEIDDTKVFKILDLEDLERTFSAYQRQQDFFVNSNSKQKEADAIDDTLSSKLKV 87 (483)
T ss_dssp CCCCSSCBCCCCCCCCCGGGCSSSGGGGCCGGGHHHHSCHHHHHHHTBSBC-----------------------------
T ss_pred CCCCCCCCCCcCceECCcccccCCccCcCCchhhccccCHHHHHHHHhhhccccccccccccccccccccccccccccCC
Confidence 4689999999999999998889999999988753 5899999999998765331 011110 00 0123356
Q ss_pred ccccccChhhHHHHHHHhhhcCCCHHHHHHHHHcCCC-CCCCHHHHHHHHhcCCCHHHHHHHHhhhcCcCCCChHHHHHH
Q 038630 509 LENRVLDPKKSQNIAILLRALNVTRDEVSEALLDGNP-ESLGAELLETLVKMAPTKEEEIKLREYKGDILKLGSAERFLK 587 (885)
Q Consensus 509 k~isVLD~KRaqNIsI~L~klkls~eeI~~AIl~~D~-~~L~~E~Le~Llk~lPT~EEi~~Lk~~~gD~~~L~~aEqFl~ 587 (885)
++++|||+||+|||+|+|++|++++++|++||++||. +.|+.|.|+.|++++||+||+++|++|.||...|+++||||+
T Consensus 88 ~~v~lLD~kRaqNi~I~L~~lk~~~~ei~~aIl~~D~~~~L~~e~l~~Ll~~~Pt~eE~~~l~~~~~d~~~L~~aEqFl~ 167 (483)
T 2j1d_G 88 KELSVIDGRRAQNCNILLSRLKLSNDEIKRAILTMDEQEDLPKDMLEQLLKFVPEKSDIDLLEEHKHELDRMAKADRFLF 167 (483)
T ss_dssp CCBCCSCHHHHHHHHHHHHHHCCCHHHHHHHHHTTSTTCCCCHHHHHHHHHSCCCHHHHHHHHTTTTCGGGBCHHHHHHH
T ss_pred CcceeCCHHHHHHHHHHHhcCCCCHHHHHHHHHccCccccCCHHHHHHHHHhCCCHHHHHHHHHhccChhhcCHHHHHHH
Confidence 7899999999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHhCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhhccccccCCCCCceeeeeccchh
Q 038630 588 AVLDIPFAFKRVEAMLYRANFDAEVKYLRKSYQTLEAASEELKNSRLFLKLLEAVLKTGNRMNVGTNRGDAKAFKLDTLL 667 (885)
Q Consensus 588 ~L~~IP~l~~RL~allfk~~F~~~v~~l~~~l~~l~~A~~eLr~S~~L~~lL~~VLaiGN~LN~gt~rG~A~GFkLdSL~ 667 (885)
+|+.||+|++||+||+|+.+|++.+++|++.|..|..||++|++|+.|+.||++||++|||||+| .||+|+||+|++|.
T Consensus 168 ~l~~ip~~~~Rl~~l~f~~~f~~~~~~l~~~l~~l~~A~~el~~S~~l~~lL~~IL~~GN~mN~g-~rg~A~GFkL~sL~ 246 (483)
T 2j1d_G 168 EMSRINHYQQRLQSLYFKKKFAERVAEVKPKVEAIRSGSEEVFRSGALKQLLEVVLAFGNYMNKG-QRGNAYGFKISSLN 246 (483)
T ss_dssp HHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHSCS-SSCCCSCCCGGGGG
T ss_pred HHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhhhhccC-CCCCceeeehHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999 79999999999999
Q ss_pred cccccccC-CCCccHHHHHHHHHHHHhCCCCCCccccccccCccchHHHHhhchhhhcccccchhhhhhhcCCCHHHHHH
Q 038630 668 KLVDIKGT-DGKTTLLHFVVQEIIRAEGAGTKSTEVNVESKNSMREDEFKKQGLEVVSGLSRDLSNVKKAAGMDSDVLSS 746 (885)
Q Consensus 668 KL~dtKs~-D~k~TLLhyLvq~Iir~e~~~L~~~n~~~~~~~~~~~E~~~k~gl~~V~~l~~EL~~V~kAAkvdld~L~~ 746 (885)
||.|||++ |+++|||||||+.|.++. +.+.+|.+||.+|++|++|++++|..
T Consensus 247 KL~d~Ks~~d~k~TLLhylv~~v~~~~---------------------------p~l~~f~~eL~~v~~Askv~~~~l~~ 299 (483)
T 2j1d_G 247 KIADTKSSIDKNITLLHYLITIVENKY---------------------------PSVLNLNEELRDIPQAAKVNMTELDK 299 (483)
T ss_dssp GGGGSBCSSCTTCBHHHHHHHHHHHHC---------------------------GGGGGHHHHTTTHHHHHTCCHHHHHH
T ss_pred hhhhcccCCCCCccHHHHHHHHHHHhC---------------------------chhhchHHHHhhHHHHhcCCHHHHHH
Confidence 99999995 999999999998776532 34678899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcC---CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccCChhhh
Q 038630 747 YVMKLEMGLEKVRLVLQYEK---PDMQGKFFHSMKMFLKEAEEEIARIKADERMALSLVKEVTEYFHGNAAKEEAHPFRI 823 (885)
Q Consensus 747 dv~kLe~gl~kv~~~Lq~~~---~~~~d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~~YFGEd~~k~e~~P~ef 823 (885)
+|.+|+++++.++.+++... .+.+|.|.++|..|+..|+.++..|+..+..|.+.|++++.|||||+.+ ..+++|
T Consensus 300 ~~~~L~~~l~~v~~~l~~~~~~~~~~~d~f~~~m~~Fl~~a~~~~~~L~~~~~~~~~~~~~l~~yFGEd~~~--~~~~~f 377 (483)
T 2j1d_G 300 EISTLRSGLKAVETELEYQKSQPPQPGDKFVSVVSQFITVASFSFSDVEDLLAEAKDLFTKAVKHFGEEAGK--IQPDEF 377 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTS--CCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC--CCHHHH
Confidence 99999999999999988754 2345799999999999999999999999999999999999999999876 478999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 038630 824 FMIVRDFLAILDHVCKEVGKM 844 (885)
Q Consensus 824 F~il~dFl~~ldka~kE~~k~ 844 (885)
|++|.+|+..|++|++|++++
T Consensus 378 F~~~~~F~~~f~~A~~en~~~ 398 (483)
T 2j1d_G 378 FGIFDQFLQAVSEAKQENENM 398 (483)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999764
No 2
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D
Probab=100.00 E-value=4.7e-72 Score=638.04 Aligned_cols=375 Identities=27% Similarity=0.379 Sum_probs=333.3
Q ss_pred CCCCCcccccccccccccccc-CCceeccccccccc--CCHHHHHHhhccCCCCCCCC---CCCC-cCCCCCCccccccc
Q 038630 441 TDGAKPKLKALHWDKVRATSD-RATVWDQLKSSSFQ--LNEDMMESLFGCNSVNSVPK---EPTT-RKSVLPPVELENRV 513 (885)
Q Consensus 441 ~~~pK~KlK~LhW~kV~~~~~-k~TIW~~l~~~~~~--lD~d~LE~LF~~k~~~~~~K---~~~~-kk~v~~~~~k~isV 513 (885)
...|+.+||+|||++|...++ ++|||+++++..+. .+++.||.+|+++....+++ +.+. ++....++.++++|
T Consensus 3 ~~~P~~~mK~l~W~ki~~~~~~~~t~W~~~~e~~~~~~~~f~~Le~~F~~~~~~~~~~k~~~~~~~~~~~~~kk~~~v~l 82 (457)
T 3obv_E 3 VYKPEVQLRRPNWSKFVAEDLSQDCFWTKVKEDRFENNELFAKLTLAFSAQTKTSKAKKDQEGGEEKKSVQKKKVKELKV 82 (457)
T ss_dssp CCCCSSCBCCCCCCEECTTTTCSSSSGGGCCGGGGCCTTHHHHHHHHTBCC-----------------------CCCCSS
T ss_pred CCCCCCCCcCCCceeCCccccCCCceeeeCccccccChhHHHHHHHHhcccccccccccccccccccccccccCCceeEe
Confidence 357999999999999998765 69999999987753 23578999999987643322 1111 22222445678999
Q ss_pred cChhhHHHHHHHhhhcCCCHHHHHHHHHcCCCCCCCHHHHHHHHhcCCCHHHHHHHHhhhcCcCCCChHHHHHHHHhCcc
Q 038630 514 LDPKKSQNIAILLRALNVTRDEVSEALLDGNPESLGAELLETLVKMAPTKEEEIKLREYKGDILKLGSAERFLKAVLDIP 593 (885)
Q Consensus 514 LD~KRaqNIsI~L~klkls~eeI~~AIl~~D~~~L~~E~Le~Llk~lPT~EEi~~Lk~~~gD~~~L~~aEqFl~~L~~IP 593 (885)
||+||+|||+|+|++|++++++|++||+.||.+.|+.|.|+.|++++||+||+++|++|.+|...|+++|||+++|+.||
T Consensus 83 LD~kraqNi~I~L~~lk~~~~ei~~aI~~~D~~~L~~e~l~~L~~~~Pt~eE~~~l~~~~~d~~~L~~~EqF~~~l~~Ip 162 (457)
T 3obv_E 83 LDSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKEEYDDLAESEQFGVVMGTVP 162 (457)
T ss_dssp SCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCTTTCCHHHHHHHHHHCCCHHHHHHHHTTTTSGGGSCHHHHHHHHHTSST
T ss_pred cCHHHHhHHHHHHhccCCCHHHHHHHHHhCCcccCCHHHHHHHHHhCCCHHHHHHHHHhccChhhcCHHHHHHHHHHccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhhccccccCCCCCceeeeeccchhcccccc
Q 038630 594 FAFKRVEAMLYRANFDAEVKYLRKSYQTLEAASEELKNSRLFLKLLEAVLKTGNRMNVGTNRGDAKAFKLDTLLKLVDIK 673 (885)
Q Consensus 594 ~l~~RL~allfk~~F~~~v~~l~~~l~~l~~A~~eLr~S~~L~~lL~~VLaiGN~LN~gt~rG~A~GFkLdSL~KL~dtK 673 (885)
+|.+||+||+|+.+|++.+++|++.|..|..||++|++|..|+.||++||++|||||+|+.+|+|+||+|++|.||.|||
T Consensus 163 ~~~~Rl~~~~f~~~f~~~~~~l~~~l~~l~~A~~~l~~S~~l~~lL~~iL~~GN~mN~g~~~g~A~GFkL~sL~KL~d~K 242 (457)
T 3obv_E 163 RLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFLCKLRDTK 242 (457)
T ss_dssp THHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTTSTTCSCSCBCGGGHHHHTTCB
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhhhccCCcCCCeeeEehHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCccHHHHHHHHHHHHhCCCCCCccccccccCccchHHHHhhchhhhcccccchhhhhhhcCCCHHHHHHHHHHHHH
Q 038630 674 GTDGKTTLLHFVVQEIIRAEGAGTKSTEVNVESKNSMREDEFKKQGLEVVSGLSRDLSNVKKAAGMDSDVLSSYVMKLEM 753 (885)
Q Consensus 674 s~D~k~TLLhyLvq~Iir~e~~~L~~~n~~~~~~~~~~~E~~~k~gl~~V~~l~~EL~~V~kAAkvdld~L~~dv~kLe~ 753 (885)
++|+++|||||||+.+.++ ++.+.+|.+||.+|.+|++|++++|..++.+|++
T Consensus 243 s~d~k~TLLh~l~~~v~~~---------------------------~p~l~~f~~eL~~v~~Aakvs~~~l~~dl~~L~~ 295 (457)
T 3obv_E 243 SADQKMTLLHFLAELCEND---------------------------HPEVLKFPDELAHVEKASRVSAENLQKSLDQMKK 295 (457)
T ss_dssp CSSTTCBHHHHHHHHHHHH---------------------------CGGGGGHHHHCTTHHHHTTCCHHHHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHc---------------------------CccccCChhhhhhHHhhccCCHHHHHHHHHHHHH
Confidence 9999999999999866543 2346789999999999999999999999999999
Q ss_pred HHHHHHHHHHhcC--CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccCChhhhHHHHHHHH
Q 038630 754 GLEKVRLVLQYEK--PDMQGKFFHSMKMFLKEAEEEIARIKADERMALSLVKEVTEYFHGNAAKEEAHPFRIFMIVRDFL 831 (885)
Q Consensus 754 gl~kv~~~Lq~~~--~~~~d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~~YFGEd~~k~e~~P~efF~il~dFl 831 (885)
+++.++..++... .+..|.|.++|..|+..|+.++..|+..++.|.+.|++++.|||||+.+ ..+++||++|.+|+
T Consensus 296 ~l~~v~~~l~~~~~~~~~~d~f~~~m~~Fl~~A~~~~~~L~~~~~~~~~~~~~l~~yFgedp~~--~~~~eFF~~~~~F~ 373 (457)
T 3obv_E 296 QIADVERDVQNFPAATDEKDKFVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKK--LSVEEFFMDLHNFR 373 (457)
T ss_dssp HHHHHHHHHHSCCCCSSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTT--SCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC--CCHHHHHHHHHHHH
Confidence 9999999998654 2345799999999999999999999999999999999999999999876 47899999999999
Q ss_pred HHHHHHHHHHHHH
Q 038630 832 AILDHVCKEVGKM 844 (885)
Q Consensus 832 ~~ldka~kE~~k~ 844 (885)
..|++|++|+.+.
T Consensus 374 ~~fkkA~~eN~~r 386 (457)
T 3obv_E 374 NMFLQAVKENQKR 386 (457)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999864
No 3
>4eah_A Formin-like protein 3, actin, alpha skeletal muscle; ATP binding, cytoskeleton, FMNL3, protein BIN; HET: ATP; 3.40A {Mus musculus}
Probab=100.00 E-value=3.7e-72 Score=630.12 Aligned_cols=370 Identities=24% Similarity=0.370 Sum_probs=328.2
Q ss_pred CCCCCccccccccccccccccCCceecccccccc--cCCHHHHHHhhccCCCCCCCCCCCCcCCCCCCccccccccChhh
Q 038630 441 TDGAKPKLKALHWDKVRATSDRATVWDQLKSSSF--QLNEDMMESLFGCNSVNSVPKEPTTRKSVLPPVELENRVLDPKK 518 (885)
Q Consensus 441 ~~~pK~KlK~LhW~kV~~~~~k~TIW~~l~~~~~--~lD~d~LE~LF~~k~~~~~~K~~~~kk~v~~~~~k~isVLD~KR 518 (885)
..+|+.|||+|||++|+..++++|||+++++..+ ++|+++||++|+.+...........++.+..++.++++|||+||
T Consensus 12 ~~~~k~kmk~l~W~kl~~~~i~~Tiw~~~~~~~~~~~ld~~~~E~lF~~k~~~~~~~~~~~k~k~~~k~~~~v~lLd~kr 91 (402)
T 4eah_A 12 PIKTKFRLPVFNWTALKPNQINGTVFSELDDEKILEDLDLDRFEELFKTKAQGPALDLICSKNKTAQKAASKVTLLEANR 91 (402)
T ss_dssp CCCCSSCCCCCCCCEECHHHHTTSTTSSCCTTSCSSTTTHHHHHHHSCCCC--------------------CBCSSCHHH
T ss_pred CCCCCCCCCCcCceeCChHhccCccccCCchhhhccccCHHHHHHHHhhcccCCccccchhcccccccCCCceeeCCHHH
Confidence 4688999999999999999999999999988765 69999999999987643211110111111233456899999999
Q ss_pred HHHHHHHhhhcCCCHHHHHHHHHcCCCCCCCHHHHHHHHhcCCCHHHHHHHHhhhcCc---CCCChHHHHHHHHhCcccH
Q 038630 519 SQNIAILLRALNVTRDEVSEALLDGNPESLGAELLETLVKMAPTKEEEIKLREYKGDI---LKLGSAERFLKAVLDIPFA 595 (885)
Q Consensus 519 aqNIsI~L~klkls~eeI~~AIl~~D~~~L~~E~Le~Llk~lPT~EEi~~Lk~~~gD~---~~L~~aEqFl~~L~~IP~l 595 (885)
+|||+|+|+++++++++|++||++||.+.|+.|.|+.|++++||+||+++|++|.+|. +.|+++|||+++|+.||+|
T Consensus 92 a~Ni~I~L~~l~~~~~ei~~aI~~~D~~~L~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~~~~L~~~EqF~~~l~~ip~~ 171 (402)
T 4eah_A 92 AKNLAITLRKAGRSAEEICRAIHTFDLQTLPVDFVECLMRFLPTEAEVKLLRQYERERQPLEELAAEDRFMLLFSKVERL 171 (402)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHTTSCSCCCHHHHHHHHHTCCCHHHHHHHHHHHHSSCCTTTBCHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHcCCcccCCHHHHHHHHhcCCCHHHHHHHHHhhccCCchhhccHHHHHHHHHHccccH
Confidence 9999999999999999999999999999999999999999999999999999999874 7899999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhhccccccCCCCCceeeeeccchhcccccccC
Q 038630 596 FKRVEAMLYRANFDAEVKYLRKSYQTLEAASEELKNSRLFLKLLEAVLKTGNRMNVGTNRGDAKAFKLDTLLKLVDIKGT 675 (885)
Q Consensus 596 ~~RL~allfk~~F~~~v~~l~~~l~~l~~A~~eLr~S~~L~~lL~~VLaiGN~LN~gt~rG~A~GFkLdSL~KL~dtKs~ 675 (885)
.+||+||+|+.+|++.+++|++.|+.|..||++|++|+.|++||++||++|||||+| .||+|+||+|++|.||.|||++
T Consensus 172 ~~Rl~~l~f~~~f~~~~~~l~~~l~~v~~A~~~l~~S~~l~~lL~~iL~~GN~mN~g-~rg~A~GFkL~sL~KL~d~Ks~ 250 (402)
T 4eah_A 172 TQRMAGMAFLGNFQDNLQMLTPQLNAIIAASASVKSSQKLKQMLEIILALGNYMNSS-KRGAVYGFKLQSLDLLLDTKST 250 (402)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCS-SSCCCSCBCGGGGGSSSSSBCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhhccCC-CCCccceeeHHHHHHHHhccCC
Confidence 999999999999999999999999999999999999999999999999999999998 7999999999999999999999
Q ss_pred CCCccHHHHHHHHHHHHhCCCCCCccccccccCccchHHHHhhchhhhcccccchhhhhhhcCCCHHHHHHHHHHHHHHH
Q 038630 676 DGKTTLLHFVVQEIIRAEGAGTKSTEVNVESKNSMREDEFKKQGLEVVSGLSRDLSNVKKAAGMDSDVLSSYVMKLEMGL 755 (885)
Q Consensus 676 D~k~TLLhyLvq~Iir~e~~~L~~~n~~~~~~~~~~~E~~~k~gl~~V~~l~~EL~~V~kAAkvdld~L~~dv~kLe~gl 755 (885)
|+++|||||||+.+.++ ++.+.+|.+||.+|.+|++|++++|..||.+|++++
T Consensus 251 d~k~TLLh~l~~~~~~~---------------------------~p~l~~f~~eL~~v~~Aa~v~~~~l~~d~~~L~~~l 303 (402)
T 4eah_A 251 DRKMTLLHFIALTVKEK---------------------------YPELANFWQELHFVEKAAAVSLENVLLDVKELGRGM 303 (402)
T ss_dssp TSSSBHHHHHHHHHHHH---------------------------CGGGGTCSTTCCSHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHhh---------------------------hHHHHHHhhhhhhHHHHhcCCHHHHHHHHHHHHHHH
Confidence 99999999999877543 234778999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccCChhhhHHHHHHHHHHHH
Q 038630 756 EKVRLVLQYEKPDMQGKFFHSMKMFLKEAEEEIARIKADERMALSLVKEVTEYFHGNAAKEEAHPFRIFMIVRDFLAILD 835 (885)
Q Consensus 756 ~kv~~~Lq~~~~~~~d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~~YFGEd~~k~e~~P~efF~il~dFl~~ld 835 (885)
+.++.++.... ..+|..|+..|+++++.|+.+++.|.+.|++++.|||||+++ ..+++||++|.+|+..|+
T Consensus 304 ~~~~~e~~~~d-------~~~l~~Fl~~a~~~~~~L~~~~~~~~~~~~~l~~yFgedpk~--~~~~~fF~~~~~F~~~fk 374 (402)
T 4eah_A 304 ELIRRECSIHD-------NSVLRNFLSTNEGKLDKLQRDAKTAEEAYNAVVRYFGESPKT--TPPSVFFPVFVRFIRSYK 374 (402)
T ss_dssp HHHHHHHHTTC-------CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTT--CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC--CCHHHHHHHHHHHHHHHH
Confidence 99988775431 248999999999999999999999999999999999999876 478999999999999999
Q ss_pred HHHHHHHHHhhh
Q 038630 836 HVCKEVGKMQER 847 (885)
Q Consensus 836 ka~kE~~k~~er 847 (885)
+|++||++.+++
T Consensus 375 ~A~~en~~r~~~ 386 (402)
T 4eah_A 375 EAEQENEARKKQ 386 (402)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 999999986553
No 4
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A {Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B* 1ux4_A
Probab=100.00 E-value=7e-69 Score=605.25 Aligned_cols=368 Identities=18% Similarity=0.258 Sum_probs=322.7
Q ss_pred CCCCccccccccccccccccCCceecccccccc--cC----CHHHHHHhhccCCCCCCCCCCCCcCCCCCCccccccccC
Q 038630 442 DGAKPKLKALHWDKVRATSDRATVWDQLKSSSF--QL----NEDMMESLFGCNSVNSVPKEPTTRKSVLPPVELENRVLD 515 (885)
Q Consensus 442 ~~pK~KlK~LhW~kV~~~~~k~TIW~~l~~~~~--~l----D~d~LE~LF~~k~~~~~~K~~~~kk~v~~~~~k~isVLD 515 (885)
.+|++|||+|||++|+. .++|||+++++..+ ++ |+++||++|+.+..... +.++ .++.++++|||
T Consensus 3 p~P~~klK~l~W~ki~~--~~~tiW~~~~~~~~~~~l~~~~d~~~lE~lF~~~~~~~~----~~~k---~~~~~~v~lLd 73 (411)
T 1ux5_A 3 PRPHKKLKQLHWEKLDC--TDNSIWGTGKAEKFADDLYEKGVLADLEKAFAAREIKSL----ASKR---KEDLQKITFLS 73 (411)
T ss_dssp CCCSSCBCCCCCCCCSS--CCSSSCCSSHHHHHHHHHHHTTHHHHHHHHTBSSCCHHH----HHHH---HHTTTSBCCSC
T ss_pred CCCCCCCCCcCcccCCC--CCCCcCcCCccHHHHHhhhhhchHHHHHHHhcccccccc----cccc---cCCCCeeeecC
Confidence 57999999999999998 68999999987654 23 78999999998864321 1111 12346789999
Q ss_pred hhhHHHHHHHhhhc-CCCHHHHHHHHHcCCCCCCCHHH-HHH------------HH-hcCCCHHHHH------HHHhhhc
Q 038630 516 PKKSQNIAILLRAL-NVTRDEVSEALLDGNPESLGAEL-LET------------LV-KMAPTKEEEI------KLREYKG 574 (885)
Q Consensus 516 ~KRaqNIsI~L~kl-kls~eeI~~AIl~~D~~~L~~E~-Le~------------Ll-k~lPT~EEi~------~Lk~~~g 574 (885)
+||+|||+|+|++| ++++++|++||++||.+.|+.+. |+. |+ +++|+++|.+ .+++|.|
T Consensus 74 ~kraqNi~I~L~~~~~~~~~ei~~ai~~~D~~~L~~~~lie~L~~~~~~ei~~~L~~~~~P~~~e~e~l~~~~~~~~~~~ 153 (411)
T 1ux5_A 74 RDISQQFGINLHMYSSLSVADLVKKILNCDRDFLQTPSVVEFLSKSEIIEVSVNLARNYAPYSTDWEGVRNLEDAKPPEK 153 (411)
T ss_dssp HHHHHHHHHHTGGGTTSCHHHHHHHHHTTTHHHHTCHHHHHHTTCHHHHCCCHHHHHHTGGGCCCCTTCCCGGGCCCCSS
T ss_pred hHHHHHHHHHHHhcCCCCHHHHHHHHHhcChhhcCHHHHHHHhchhHHHhhHHHHHHhcCCCchhHHHHHHHHHhhhccC
Confidence 99999999999998 89999999999999999998433 443 44 7999988865 3446678
Q ss_pred CcCCCChHHHHHHHHh-Cc-ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhhccccccC
Q 038630 575 DILKLGSAERFLKAVL-DI-PFAFKRVEAMLYRANFDAEVKYLRKSYQTLEAASEELKNSRLFLKLLEAVLKTGNRMNVG 652 (885)
Q Consensus 575 D~~~L~~aEqFl~~L~-~I-P~l~~RL~allfk~~F~~~v~~l~~~l~~l~~A~~eLr~S~~L~~lL~~VLaiGN~LN~g 652 (885)
|...|+++|||+++|+ .| +++.+||+||+|+.+|++.+++|++.|..|..||++|++|+.|++||++||++|||||+|
T Consensus 154 d~~~L~~~eqf~~~l~~~i~~~~~~Rl~~~~f~~~f~~~~~~l~~~l~~l~~A~~el~~S~~l~~lL~~iL~~GN~mN~g 233 (411)
T 1ux5_A 154 DPNDLQRADQIYLQLMVNLESYWGSRMRALTVVTSYEREYNELLAKLRKVDKAVSALQESDNLRNVFNVILAVGNFMNDT 233 (411)
T ss_dssp CSTTBCHHHHHHHHTTTTTTTTHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSCG
T ss_pred ChhhCCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhCcccCC
Confidence 9999999999999987 69 568999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeeeccchhcccccccCCCCccHHHHHHHHHHHHhCCCCCCccccccccCccchHHHHhhchhhhcccccchhh
Q 038630 653 TNRGDAKAFKLDTLLKLVDIKGTDGKTTLLHFVVQEIIRAEGAGTKSTEVNVESKNSMREDEFKKQGLEVVSGLSRDLSN 732 (885)
Q Consensus 653 t~rG~A~GFkLdSL~KL~dtKs~D~k~TLLhyLvq~Iir~e~~~L~~~n~~~~~~~~~~~E~~~k~gl~~V~~l~~EL~~ 732 (885)
+. +|+||+|++|.||.|||++|+++|||||||+.|.++ +|.+.+|.+||.+
T Consensus 234 ~~--~A~GFkL~sL~KL~d~Ks~d~k~TLLh~l~~~v~~~---------------------------~p~l~~f~~eL~~ 284 (411)
T 1ux5_A 234 SK--QAQGFKLSTLQRLTFIKDTTNSMTFLNYVEKIVRLN---------------------------YPSFNDFLSELEP 284 (411)
T ss_dssp GG--CCSCCCGGGGGGSSSCBCTTSCSBHHHHHHHHHHHH---------------------------CGGGGGHHHHTHH
T ss_pred CC--CeeEeehhHHHHHHHhhCCCCCccHHHHHHHHHHHh---------------------------Ccccccccchhhh
Confidence 85 799999999999999999999999999999866542 2447789999999
Q ss_pred hhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcC------CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038630 733 VKKAAGMDSDVLSSYVMKLEMGLEKVRLVLQYEK------PDMQGKFFHSMKMFLKEAEEEIARIKADERMALSLVKEVT 806 (885)
Q Consensus 733 V~kAAkvdld~L~~dv~kLe~gl~kv~~~Lq~~~------~~~~d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~ 806 (885)
|++|++||+++|.+++++|++++++++.+++... .+.+++|..+|..|+..|+.++..|++.++.+.+.|++++
T Consensus 285 v~~Aakv~~~~l~~d~~~L~~~l~~v~~~l~~~~~s~~~~~~~~d~f~~~~~~fl~~a~~~~~~l~~~~~~~~~~~~~l~ 364 (411)
T 1ux5_A 285 VLDVVKVSIEQLVNDCKDFSQSIVNVERSVEIGNLSDSSKFHPLDKVLIKTLPVLPEARKKGDLLEDEVKLTIMEFESLM 364 (411)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHSTTTCTTSSCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999987643 1345799999999999999999999999999999999999
Q ss_pred HhccCCCccccCChhhhHHHHHHHHHHHHHHHHHHHHHhhhh
Q 038630 807 EYFHGNAAKEEAHPFRIFMIVRDFLAILDHVCKEVGKMQERT 848 (885)
Q Consensus 807 ~YFGEd~~k~e~~P~efF~il~dFl~~ldka~kE~~k~~er~ 848 (885)
.|||||++. ...+++||++|.+|+..|++|++|+.+.+|.+
T Consensus 365 ~yfged~~~-~~~~~~fF~~~~~F~~~f~~a~~en~~~~e~~ 405 (411)
T 1ux5_A 365 HTYGEDSGD-KFAKISFFKKFADFINEYKKAQAQNLAAEEEE 405 (411)
T ss_dssp HHTTCCSSC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999873 25789999999999999999999999876643
No 5
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1
Probab=100.00 E-value=1.8e-65 Score=564.69 Aligned_cols=311 Identities=28% Similarity=0.400 Sum_probs=269.5
Q ss_pred ccccccccChhhHHHHHHHhhhcCCCHHHHHHHHHcCCCCCCCHHHHHHHHhcCCCHHHHHHHHhhhcCcCCCChHHHHH
Q 038630 507 VELENRVLDPKKSQNIAILLRALNVTRDEVSEALLDGNPESLGAELLETLVKMAPTKEEEIKLREYKGDILKLGSAERFL 586 (885)
Q Consensus 507 ~~k~isVLD~KRaqNIsI~L~klkls~eeI~~AIl~~D~~~L~~E~Le~Llk~lPT~EEi~~Lk~~~gD~~~L~~aEqFl 586 (885)
+.++++|||+||+|||+|+|++|++++++|++||++||.+.|+.|.|+.|++++||+||+++|++|.||...|+++|||+
T Consensus 5 k~~~i~vLD~kraqNi~I~L~~~k~~~~ei~~aI~~~D~~~L~~e~l~~L~~~~Pt~eE~~~l~~~~~~~~~L~~~EqF~ 84 (340)
T 1v9d_A 5 KVKELKVLDSKTAQNLSIFLGSFRMPYQEIKNVILEVNEAVLTESMIQNLIKQMPEPEQLKMLSELKEEYDDLAESEQFG 84 (340)
T ss_dssp -CCCCSSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCTTTCCHHHHHHHHHHSCCHHHHHHHHTCGGGGGGSCHHHHHH
T ss_pred CCCeeeecCHHHHhHHHHHHhhcCCCHHHHHHHHHhCCcccCCHHHHHHHHccCCCHHHHHHHHHhhCChhhcCHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhhccccccCCCCCceeeeeccch
Q 038630 587 KAVLDIPFAFKRVEAMLYRANFDAEVKYLRKSYQTLEAASEELKNSRLFLKLLEAVLKTGNRMNVGTNRGDAKAFKLDTL 666 (885)
Q Consensus 587 ~~L~~IP~l~~RL~allfk~~F~~~v~~l~~~l~~l~~A~~eLr~S~~L~~lL~~VLaiGN~LN~gt~rG~A~GFkLdSL 666 (885)
++|+.||++.+||+||+|+.+|++.+++|++.|..|..||++|++|+.|++||++||++|||||+|+.+|+|+||+|++|
T Consensus 85 ~~l~~ip~~~~Rl~~~~f~~~f~~~~~~l~~~l~~l~~A~~el~~S~~l~~lL~~iL~~GN~mN~g~~~g~A~GFkL~sL 164 (340)
T 1v9d_A 85 VVMGTVPRLRPRLNAILFKLQFSEQVENIKPEIVSVTAACEELRKSENFSSLLELTLLVGNYMNAGSRNAGAFGFNISFL 164 (340)
T ss_dssp HHHHTSTTHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTCHHHHHCC------------------------CCH
T ss_pred HHHHCCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHcCcCCCCCCCCceeeeehHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccCCCCccHHHHHHHHHHHHhCCCCCCccccccccCccchHHHHhhchhhhcccccchhhhhhhcCCCHHHHHH
Q 038630 667 LKLVDIKGTDGKTTLLHFVVQEIIRAEGAGTKSTEVNVESKNSMREDEFKKQGLEVVSGLSRDLSNVKKAAGMDSDVLSS 746 (885)
Q Consensus 667 ~KL~dtKs~D~k~TLLhyLvq~Iir~e~~~L~~~n~~~~~~~~~~~E~~~k~gl~~V~~l~~EL~~V~kAAkvdld~L~~ 746 (885)
.||.|||++|+++|||||||+.+.++ ++.+.+|.+||.+|++|++||+++|..
T Consensus 165 ~KL~d~Ks~d~k~TLLh~lv~~~~~~---------------------------~p~l~~f~~eL~~v~~Askvs~~~l~~ 217 (340)
T 1v9d_A 165 CKLRDTKSADQKMTLLHFLAELCEND---------------------------HPEVLKFPDELAHVEKASRVSAENLQK 217 (340)
T ss_dssp HHHHHSBCSSTTSBHHHHHHHHHHHS---------------------------CCTTSSGGGGCTTHHHHHHCCHHHHHH
T ss_pred HhhhhhcCCCCCccHHHHHHHHHHHh---------------------------CchhccchhHHHhHHHHHhCCHHHHHH
Confidence 99999999999999999999866532 234678999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcC--CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccCChhhhH
Q 038630 747 YVMKLEMGLEKVRLVLQYEK--PDMQGKFFHSMKMFLKEAEEEIARIKADERMALSLVKEVTEYFHGNAAKEEAHPFRIF 824 (885)
Q Consensus 747 dv~kLe~gl~kv~~~Lq~~~--~~~~d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~~YFGEd~~k~e~~P~efF 824 (885)
++.+|++++..++..++... .+..|+|.++|..|+..|++++..|+..++.|.+.|++++.|||||+++ ..+++||
T Consensus 218 ~l~~l~~~~~~~~~~l~~~~~~~~~~d~f~~~m~~Fl~~a~~~~~~l~~~~~~~~~~~~~l~~yfged~~~--~~~~~fF 295 (340)
T 1v9d_A 218 SLDQMKKQIADVERDVQNFPAATDEKDKFVEKMTSFVKDAQEQYNKLRMMHSNMETLYKELGDYFVFDPKK--LSVEEFF 295 (340)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTT--SCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC--CCHHHHH
Confidence 99999999999999887654 2345799999999999999999999999999999999999999999876 5789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 038630 825 MIVRDFLAILDHVCKEVGKMQE 846 (885)
Q Consensus 825 ~il~dFl~~ldka~kE~~k~~e 846 (885)
++|.+|+..|++||+|+++..|
T Consensus 296 ~~~~~F~~~f~~a~~en~~r~e 317 (340)
T 1v9d_A 296 MDLHNFRNMFLQAVKENQKRRE 317 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987433
No 6
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=92.64 E-value=0.16 Score=39.98 Aligned_cols=30 Identities=13% Similarity=0.077 Sum_probs=18.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhccCCC
Q 038630 118 VAIAISVGIVTLGMLSALAFFLYRHRVKHP 147 (885)
Q Consensus 118 ~~iai~~~~~~~~~~~~~~~f~~~~r~~~~ 147 (885)
+|..+..+++.++++.++.|||+|||+.+.
T Consensus 13 IA~gVVgGv~~~~ii~~~~~~~~RRr~~~~ 42 (44)
T 2ks1_B 13 IATGMVGALLLLLVVALGIGLFMRRRHIVR 42 (44)
T ss_dssp STHHHHHHHHHHHHHHHHHHHHHHTTTCCS
T ss_pred EEeehhHHHHHHHHHHHHHHHHhhhhHhhc
Confidence 444445556666677666666666666543
No 7
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=91.70 E-value=0.19 Score=39.50 Aligned_cols=33 Identities=18% Similarity=0.141 Sum_probs=18.8
Q ss_pred CchhhhHH--HHHHHHHHHHHHHHHHhhhhccCCC
Q 038630 115 AKKVAIAI--SVGIVTLGMLSALAFFLYRHRVKHP 147 (885)
Q Consensus 115 ~~k~~iai--~~~~~~~~~~~~~~~f~~~~r~~~~ 147 (885)
++..+||. ..+++.++++.++.|||+|||+++.
T Consensus 7 s~~~aIA~gVVgGv~~v~ii~~~~~~~~RRRr~~~ 41 (44)
T 2l2t_A 7 ARTPLIAAGVIGGLFILVIVGLTFAVYVRRKSIKK 41 (44)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSC
T ss_pred CCcceEEEeehHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 34444444 4445666667666666666666554
No 8
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=87.96 E-value=0.58 Score=35.64 Aligned_cols=20 Identities=15% Similarity=0.162 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHhhhhc
Q 038630 124 VGIVTLGMLSALAFFLYRHR 143 (885)
Q Consensus 124 ~~~~~~~~~~~~~~f~~~~r 143 (885)
-+++.++++++++||+||||
T Consensus 19 G~v~gv~li~~l~~~~~rrr 38 (38)
T 2k1k_A 19 GLLLGAALLLGILVFRSRRA 38 (38)
T ss_dssp HHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHeecC
Confidence 34445666777778887765
No 9
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=86.75 E-value=0.72 Score=36.25 Aligned_cols=27 Identities=26% Similarity=0.444 Sum_probs=13.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhh-hhccCC
Q 038630 119 AIAISVGIVTLGMLSALAFFLY-RHRVKH 146 (885)
Q Consensus 119 ~iai~~~~~~~~~~~~~~~f~~-~~r~~~ 146 (885)
++|+.++++ ++++.++++|+| |||+..
T Consensus 14 Ia~~vVGvl-l~vi~~l~~~~~~RRR~~~ 41 (44)
T 2jwa_A 14 IISAVVGIL-LVVVLGVVFGILIKRRQQK 41 (44)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHCSC
T ss_pred hHHHHHHHH-HHHHHHHHHHhheehhhhh
Confidence 444455544 444445554444 555543
No 10
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=84.34 E-value=0.87 Score=33.89 Aligned_cols=29 Identities=28% Similarity=0.505 Sum_probs=20.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhccCCC
Q 038630 119 AIAISVGIVTLGMLSALAFFLYRHRVKHP 147 (885)
Q Consensus 119 ~iai~~~~~~~~~~~~~~~f~~~~r~~~~ 147 (885)
|..+.++++.+.++-...|++||+||.|+
T Consensus 9 alt~i~gl~vif~~lg~tflywrgrrhhh 37 (40)
T 2l9u_A 9 ALTVIAGLVVIFMMLGGTFLYWRGRRHHH 37 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhCceeEEEccccccc
Confidence 33346677777777777788888888765
No 11
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=81.61 E-value=1.2 Score=33.97 Aligned_cols=29 Identities=21% Similarity=0.187 Sum_probs=13.6
Q ss_pred CchhhhHHHHHHHHHHHH-HHHHHHhhhhc
Q 038630 115 AKKVAIAISVGIVTLGML-SALAFFLYRHR 143 (885)
Q Consensus 115 ~~k~~iai~~~~~~~~~~-~~~~~f~~~~r 143 (885)
++.++||++++...+.++ .+.++|+++||
T Consensus 10 ~~~~~I~~~vv~Gv~ll~~iv~~~~~~~rR 39 (41)
T 2k9y_A 10 SGNLAVIGGVAVGVVLLLVLAGVGFFIHRR 39 (41)
T ss_dssp CSSTHHHHHHHHHHHHHHHHHHHHHSSSSS
T ss_pred CceEEEEeehhHHHHHHHHHHHHheeEeee
Confidence 445666666554444443 23333444443
No 12
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=79.17 E-value=27 Score=36.18 Aligned_cols=57 Identities=9% Similarity=0.031 Sum_probs=40.4
Q ss_pred HhCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcH-----HHHHHHHHHHhhcccccc
Q 038630 589 VLDIPFAFKRVEAMLYRANFDAEVKYLRKSYQTLEAASEELKNSR-----LFLKLLEAVLKTGNRMNV 651 (885)
Q Consensus 589 L~~IP~l~~RL~allfk~~F~~~v~~l~~~l~~l~~A~~eLr~S~-----~L~~lL~~VLaiGN~LN~ 651 (885)
+.+=|.++..|. .|+..++.++..|+.+.++|+.+.++. ....+...+..+|+..+.
T Consensus 13 ~~DSP~FR~~l~------~~E~~~~~l~~~l~kl~k~~~~~~~a~~~~~~a~~~f~~~L~~~~~~~~~ 74 (265)
T 2q12_A 13 LEDSPQTRSLLG------VFEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFP 74 (265)
T ss_dssp CCSHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGSCCC
T ss_pred hcCChHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 345566666555 478888889999999988887776543 456777777788775443
No 13
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=77.54 E-value=95 Score=34.97 Aligned_cols=64 Identities=16% Similarity=0.164 Sum_probs=37.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 038630 740 DSDVLSSYVMKLEMGLEKVRLVLQYEKPDMQGKFFHSMKMFLKEAEEEIARIKADERMALSLVKEVTEY 808 (885)
Q Consensus 740 dld~L~~dv~kLe~gl~kv~~~Lq~~~~~~~d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~~Y 808 (885)
.+++|.+|-.+|..=++.+++.++.. +...+.++.|+...+.++..++.......+.|..+.+|
T Consensus 236 lleVv~~Da~EL~~V~~eL~~~~~~i-----~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~e~ 299 (413)
T 4hpq_C 236 LFEIVERDDKDLAAINSLLQDAAIDV-----ASFVRKVNMLLDERDADKAKMQATLSKLLTELRKHEEY 299 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcchhhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 45666666666555554444444332 25556667777777777776666666666655554444
No 14
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=66.21 E-value=1.5e+02 Score=32.17 Aligned_cols=53 Identities=9% Similarity=0.065 Sum_probs=38.2
Q ss_pred HhCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcH-----HHHHHHHHHHhhcc
Q 038630 589 VLDIPFAFKRVEAMLYRANFDAEVKYLRKSYQTLEAASEELKNSR-----LFLKLLEAVLKTGN 647 (885)
Q Consensus 589 L~~IP~l~~RL~allfk~~F~~~v~~l~~~l~~l~~A~~eLr~S~-----~L~~lL~~VLaiGN 647 (885)
+.+=|.++..|. .|+..++.++..|+.+.++|+.+.++. .+..+...++.+|+
T Consensus 13 ~~DSP~FR~~l~------~~E~~~~~l~~~l~kl~k~~~~~~~a~~~~~~a~~~f~~~L~~~~~ 70 (385)
T 2q13_A 13 LEDSPQTRSLLG------VFEEDATAISNYMNQLYQAMHRIYDAQNELSAATHLTSKLLKEYEK 70 (385)
T ss_dssp TTCCHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred hcCCHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345576766665 467888889999999999887776643 35677777777666
No 15
>2hfi_A Hypothetical protein YPPE; YPPE_bacsu, GFT structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; NMR {Bacillus subtilis} SCOP: a.24.26.1 PDB: 2im8_A
Probab=64.28 E-value=63 Score=30.87 Aligned_cols=52 Identities=23% Similarity=0.151 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC-CCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 038630 744 LSSYVMKLEMGLEKVRLVLQYEK-PDMQGKFFHSMKMFLKEAEEEIARIKADE 795 (885)
Q Consensus 744 L~~dv~kLe~gl~kv~~~Lq~~~-~~~~d~F~e~m~~Fl~~Ae~ei~~L~~~~ 795 (885)
|.+-..+|...++.+....+..+ .+.+-.|...+++|.+...+.++..+...
T Consensus 6 L~~lteqLi~~~~e~~~~y~~~ke~~~e~DF~~eVKPf~d~vd~~l~~w~~~a 58 (131)
T 2hfi_A 6 LLEMTEQMIEVAEKGADRYQEGKNSNHSYDFFETIKPAVEENDELAARWAEGA 58 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSCCCCCSSTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHH
Confidence 33334445444444444443332 22345899999999999999888776543
No 16
>1iij_A ERBB-2 receptor protein-tyrosine kinase; alpha-helix-PI-bulge-alpha-helix, signaling protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=63.89 E-value=2.7 Score=31.52 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhcc
Q 038630 123 SVGIVTLGMLSALAFFLYRHRV 144 (885)
Q Consensus 123 ~~~~~~~~~~~~~~~f~~~~r~ 144 (885)
.++++.+.++++..+||+|||+
T Consensus 14 Vvglll~vii~l~~~~~iRRr~ 35 (35)
T 1iij_A 14 VVGVLLFLILVVVVGILIKRRR 35 (35)
T ss_dssp HHHHHHHHHHTTTTTHHHHHCC
T ss_pred HHHHHHHHHHHHHhheEEeecC
Confidence 4444444445455556656664
No 17
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=57.86 E-value=67 Score=31.06 Aligned_cols=91 Identities=14% Similarity=0.098 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccCChh
Q 038630 742 DVLSSYVMKLEMGLEKVRLVLQYEKPDMQGKFFHSMKMFLKEAEEEIARIKADERMALSLVKEVTEYFHGNAAKEEAHPF 821 (885)
Q Consensus 742 d~L~~dv~kLe~gl~kv~~~Lq~~~~~~~d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~~YFGEd~~k~e~~P~ 821 (885)
+.|-..|.+|..-++.++..+-...--+..+..+.+..=+..|..++..|+..+....-.|+.+++- |=... ++-.
T Consensus 24 d~LvtkVDDLQD~VE~LRkDV~~RgvrP~~~ql~~v~kdi~~a~~eL~~m~~~i~~ekP~WKKiWE~--EL~~V--ceEQ 99 (141)
T 3okq_A 24 DTLLSKVDDLQDVIEIMRKDVAERRSQPAKKKLETVSKDLENAQADVLKLQEFIDTEKPHWKKTWEA--ELDKV--CEEQ 99 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH--HHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHH--HHHHH--HHHH
Confidence 4444555555555555554432221112346677777888889999999999888888888888873 11111 2335
Q ss_pred hhHHHHHHHHHHHHH
Q 038630 822 RIFMIVRDFLAILDH 836 (885)
Q Consensus 822 efF~il~dFl~~ldk 836 (885)
+||..-.+++..|+.
T Consensus 100 qfl~~QedL~~DL~e 114 (141)
T 3okq_A 100 QFLTLQEELILDLKE 114 (141)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 788776666665543
No 18
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=55.59 E-value=21 Score=41.14 Aligned_cols=60 Identities=10% Similarity=0.155 Sum_probs=40.3
Q ss_pred CHHHHHHHHH-HHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038630 740 DSDVLSSYVM-KLEMGLEKVRLVLQYEKPDMQGKFFHSMKMFLKEAEEEIARIKADERMALSLVKE 804 (885)
Q Consensus 740 dld~L~~dv~-kLe~gl~kv~~~Lq~~~~~~~d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~ke 804 (885)
+.++...++. +|++.+..|++.|+... .-+.+|+.=|++-..+|++|+.++...++..+.
T Consensus 103 dNdNtynE~S~ELRRrIqyLKekVdnQl-----snIrvLQsnLedq~~kIQRLEvDIdiqirsCKg 163 (562)
T 3ghg_A 103 NRDNTYNRVSEDLRSRIEVLKRKVIEKV-----QHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRG 163 (562)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 4555556666 88888888888776542 334677777777777788887777655544443
No 19
>2huj_A LIN2004 protein; hypothetical protein, structural genomics, PSI- protein structure initiative, joint center for structural G JCSG; 1.74A {Listeria innocua} SCOP: a.24.26.1
Probab=49.86 E-value=1.7e+02 Score=28.19 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=21.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHH
Q 038630 770 QGKFFHSMKMFLKEAEEEIARIKADE 795 (885)
Q Consensus 770 ~d~F~e~m~~Fl~~Ae~ei~~L~~~~ 795 (885)
+-.|...+++|.+...+.++..+...
T Consensus 49 e~DFy~eVKPf~d~vd~~l~eW~~~a 74 (140)
T 2huj_A 49 PFDFYKDMKPFVDEAKRCADDFLELA 74 (140)
T ss_dssp CCCTTTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccccccchHHHHHHHHHHHHHHH
Confidence 45899999999999999888776543
No 20
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=47.77 E-value=3.1e+02 Score=29.95 Aligned_cols=39 Identities=18% Similarity=0.187 Sum_probs=29.5
Q ss_pred HHhCcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Q 038630 588 AVLDIPFAFKRVEAMLYRANFDAEVKYLRKSYQTLEAASEELKNS 632 (885)
Q Consensus 588 ~L~~IP~l~~RL~allfk~~F~~~v~~l~~~l~~l~~A~~eLr~S 632 (885)
++.+=|.+++.|. .|+++++.++..|+.+.++|+.+.++
T Consensus 35 a~~DSP~FRa~l~------~~E~~~~~l~~~l~kl~k~~~~~~~~ 73 (407)
T 4h8s_A 35 ALQDSPQTRSLLS------VFEEDAGTLTDYTNQLLQAMQRVYGA 73 (407)
T ss_dssp SSSCCHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456787877765 46888888999999888888777543
No 21
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=47.22 E-value=1.9e+02 Score=27.24 Aligned_cols=85 Identities=9% Similarity=0.118 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccCCh
Q 038630 741 SDVLSSYVMKLEMGLEKVRLVLQYEKPDMQGKFFHSMKMFLKEAEEEIARIKADERMALSLVKEVTEYFHGNAAKEEAHP 820 (885)
Q Consensus 741 ld~L~~dv~kLe~gl~kv~~~Lq~~~~~~~d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~~YFGEd~~k~e~~P 820 (885)
..+|.+.++.|+..++.+...= +.+ +..-+.-.+.|...+....+.+......+.++..- .+
T Consensus 4 a~~V~s~l~~LEaeyq~L~~kE-------~qr-ynqeka~AE~A~~~L~~~~~m~~~i~ek~~~i~~~--~~-------- 65 (119)
T 2avr_X 4 AASLVGELQALDAEYQNLANQE-------EAR-FNEERAQADAARQALAQNEQVYNELSQRAQRLQAE--AN-------- 65 (119)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH-------HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TT--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hc--------
Confidence 3456777888888777664311 112 23445556777777887777777777777777651 11
Q ss_pred hhhHH-HHHHHHHHHHHHHHHHHH
Q 038630 821 FRIFM-IVRDFLAILDHVCKEVGK 843 (885)
Q Consensus 821 ~efF~-il~dFl~~ldka~kE~~k 843 (885)
..||+ .....++.|+.+.+++++
T Consensus 66 ~~~yK~eY~~L~KkYk~~~~~Ld~ 89 (119)
T 2avr_X 66 TRFYKSQYQELASKYEDALKKLEA 89 (119)
T ss_dssp SCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 23453 344445555555555444
No 22
>2ets_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.25A {Staphylococcus aureus subsp} SCOP: a.24.26.1
Probab=45.58 E-value=93 Score=29.61 Aligned_cols=66 Identities=14% Similarity=0.288 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHH-
Q 038630 742 DVLSSYVMKLEMGLEKVRLVLQYEKPDMQGKFFHSMKMFLKEAEEEIARIKA--------------DERMALSLVKEVT- 806 (885)
Q Consensus 742 d~L~~dv~kLe~gl~kv~~~Lq~~~~~~~d~F~e~m~~Fl~~Ae~ei~~L~~--------------~~~~a~~~~kel~- 806 (885)
++|..++.++....+.+++. +.+-.|...+++|.+...+.++..+. +++.+.+.+++++
T Consensus 18 ~~L~~~~~~~~~ry~~~ke~------~~e~DFy~eVKPf~d~vd~~l~eW~~~a~~~IrpkYm~~~Qie~~~eNie~lsV 91 (128)
T 2ets_A 18 ESLIYEVNNMQQNFENVKSQ------QQDHDFYQTVKPYTEHIDSILNEIKLHREFIIEVPYMNSRKFELLIANIEQLSV 91 (128)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------TCCCCTTTTHHHHHHHHHHHHHHHHHTHHHHTTSTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc------CCCCCccccccchHHHHHHHHHHHHHHHHhHcCcccCCHHHHHHHHHHHHHHHH
Confidence 34455555555555444321 12458999999999999999998776 2344555565543
Q ss_pred -HhccCCC
Q 038630 807 -EYFHGNA 813 (885)
Q Consensus 807 -~YFGEd~ 813 (885)
.||+...
T Consensus 92 q~f~~~Ts 99 (128)
T 2ets_A 92 ECHFKRTS 99 (128)
T ss_dssp HTTCTTSC
T ss_pred HHhCCCcc
Confidence 3666543
No 23
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=45.34 E-value=1.8e+02 Score=26.43 Aligned_cols=35 Identities=3% Similarity=0.169 Sum_probs=21.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038630 770 QGKFFHSMKMFLKEAEEEIARIKADERMALSLVKE 804 (885)
Q Consensus 770 ~d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~ke 804 (885)
+......|.....+.......++..++.+.....+
T Consensus 45 ~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~ 79 (127)
T 1ez3_A 45 DEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQ 79 (127)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667767777666666777766666554443
No 24
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=43.11 E-value=1.5e+02 Score=32.22 Aligned_cols=64 Identities=13% Similarity=0.133 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038630 744 LSSYVMKLEMGLEKVRLVLQYEKPDMQGKFFHSMKMFLKEAEEEIARIKADERMALSLVKEVTE 807 (885)
Q Consensus 744 L~~dv~kLe~gl~kv~~~Lq~~~~~~~d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~~ 807 (885)
|..++..|++.+...++.+..........+.+....++++..+++..+.+..+...+....+.+
T Consensus 226 lrr~l~~lrr~l~p~~~vl~~L~~~~~~~~~~~~~~~lrDv~d~~~~~~e~~~~~re~l~~l~d 289 (363)
T 2iub_A 226 LKRNLVELRKTIWPLREVLSSLYRDVPPLIEKETVPYFRDVYDHTIQIADTVETFRDIVSGLLD 289 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444332221123344556666666666666655554444444433333
No 25
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}
Probab=40.85 E-value=2.1e+02 Score=30.17 Aligned_cols=103 Identities=10% Similarity=-0.014 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccCC
Q 038630 742 DVLSSYVMKLEMGLEKVRLVLQYEKPDMQGKFFH--SMKMFLKEAEEEIARIKADERMALSLVKEVTEYFHGNAAKEEAH 819 (885)
Q Consensus 742 d~L~~dv~kLe~gl~kv~~~Lq~~~~~~~d~F~e--~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~~YFGEd~~k~e~~ 819 (885)
..|..++..++..+..+-+.+...- ..++... ..++-+..-++++..+++.+.+.++.=.+++..|--+....+.+
T Consensus 137 ~~Le~e~~~l~~~~~~~L~~L~~~i--~~~~L~~Ll~~~k~L~~~~~kv~~vr~~leelLddDeDm~~myLT~k~~~~~d 214 (261)
T 3rkg_A 137 SALETDFKLHSQICIQILNDLENEV--NRLKLRHLLIKSKDLTLFYQKTLLIRDLLDELLENDDDLANMYLTVKKSPKDN 214 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHTCCSSCCCTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHhhccCCCCCccc
Confidence 4455666666655555444443221 1122221 11122333334444455555555554455555444332222223
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhh
Q 038630 820 PFRIFMIVRDFLAILDHVCKEVGKMQE 846 (885)
Q Consensus 820 P~efF~il~dFl~~ldka~kE~~k~~e 846 (885)
-+++=+.+..|+...+....+++.+.+
T Consensus 215 ~eElEmLLE~Y~~q~d~~~~~~~~L~~ 241 (261)
T 3rkg_A 215 FSDLEMLIETYYTQCDEYVQQSESLIQ 241 (261)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677777777777766666555
No 26
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=40.68 E-value=74 Score=30.73 Aligned_cols=65 Identities=22% Similarity=0.248 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC---CC-chhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038630 741 SDVLSSYVMKLEMGLEKVRLVLQYEKP---DM-QGKFFHSM--KMFLKEAEEEIARIKADERMALSLVKEV 805 (885)
Q Consensus 741 ld~L~~dv~kLe~gl~kv~~~Lq~~~~---~~-~d~F~e~m--~~Fl~~Ae~ei~~L~~~~~~a~~~~kel 805 (885)
++.+..|+..+.+.|+++++.++..+. .. ......++ +.|+...++-+..|++++.++.+.|.-+
T Consensus 56 l~~v~kdi~~a~~eL~~m~~~i~~ekP~WKKiWE~EL~~VceEQqfl~~QedL~~DL~eDL~ka~etf~lV 126 (141)
T 3okq_A 56 LETVSKDLENAQADVLKLQEFIDTEKPHWKKTWEAELDKVCEEQQFLTLQEELILDLKEDLGKALETFDLI 126 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555554443320 00 00111111 4577777777777888877777766543
No 27
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A
Probab=39.96 E-value=1.7e+02 Score=29.87 Aligned_cols=65 Identities=6% Similarity=0.011 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038630 741 SDVLSSYVMKLEMGLEKVRLVLQYEKPDMQGKFFHSMKMFLKEAEEEIARIKADERMALSLVKEV 805 (885)
Q Consensus 741 ld~L~~dv~kLe~gl~kv~~~Lq~~~~~~~d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel 805 (885)
+-.|..++..|++-+.-.+..+..........+.+....++.+...++.++.+..+...+....+
T Consensus 189 l~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~~~~~~~~~~l~Dv~d~~~~~~e~~~~~re~l~~l 253 (264)
T 3nvo_A 189 LALLRKQLIVMRRYMAPQRDVYARLASERLPWMSDDHRRRMQDIADRLGRGLDEIDACIARTGIM 253 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTSCCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhCCCccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566667777777766666665443222334556777777777777776665554444333333
No 28
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=37.44 E-value=95 Score=27.22 Aligned_cols=59 Identities=14% Similarity=0.079 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038630 741 SDVLSSYVMKLEMGLEKVRLVLQYEKPDMQGKFFHSMKMFLKEAEEEIARIKADERMALSLVKEV 805 (885)
Q Consensus 741 ld~L~~dv~kLe~gl~kv~~~Lq~~~~~~~d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel 805 (885)
++.|...|.+|+..+..+...|....--..| .+. +.....++..++..+..++..|.+|
T Consensus 24 le~le~~Ie~LE~~i~~le~~ladp~~y~~d--~~~----~~~l~~~l~~~e~eLe~~~erWeeL 82 (89)
T 2lw1_A 24 LEQLPQLLEDLEAKLEALQTQVADASFFSQP--HEQ----TQKVLADMAAAEQELEQAFERWEYL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTGGGSC--HHH----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcccccCC--HHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777888888887777766432100011 122 2234445555666666666666554
No 29
>3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic domain, PSI-2, protein structure initiative; HET: MSE; 1.90A {Vibrio parahaemolyticus rimd 2210633} PDB: 3bhc_A*
Probab=37.43 E-value=1.2e+02 Score=30.93 Aligned_cols=60 Identities=10% Similarity=0.056 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038630 739 MDSDVLSSYVMKLEMGLEKVRLVLQYEKPDMQGKFFHSMKMFLKEAEEEIARIKADERMAL 799 (885)
Q Consensus 739 vdld~L~~dv~kLe~gl~kv~~~Lq~~~~~~~d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~ 799 (885)
..+-.|..++..|++-+...++.+......... +.+....++.+..+.+..+.+......
T Consensus 171 ~~l~~lrr~l~~lrr~l~p~r~~l~~L~r~~~~-~~~~~~~~~rdv~d~~~~~~e~i~~~r 230 (252)
T 3ck6_A 171 YNHIAAQKALISIKRFIRPQQYAIRDLIESESE-LVTSRPHQYRFAHNNITRINETIEFYL 230 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH-HHHTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666777777777776666665433211123 445555666666666665555444333
No 30
>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii}
Probab=37.26 E-value=1.7e+02 Score=30.44 Aligned_cols=36 Identities=0% Similarity=-0.086 Sum_probs=21.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038630 772 KFFHSMKMFLKEAEEEIARIKADERMALSLVKEVTE 807 (885)
Q Consensus 772 ~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~~ 807 (885)
.+.+....++++....+.++.+..+...+....+..
T Consensus 230 ~~~~~~~~~l~Dv~dh~~~~~e~~~~~re~l~~l~d 265 (280)
T 4egw_A 230 ITTKEDRENFEDLYYDTLQLIDMSATYREVLTSMMD 265 (280)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777666655544444444444
No 31
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=36.43 E-value=74 Score=36.45 Aligned_cols=41 Identities=12% Similarity=0.148 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc
Q 038630 774 FHSMKMFLKEAEEEIARIKADERMALSLVKEVTEYFHGNAA 814 (885)
Q Consensus 774 ~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~~YFGEd~~ 814 (885)
.+.|...+++.++++..++.+...+....+++.+-+.+++.
T Consensus 546 ~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~~~~ 586 (597)
T 3oja_B 546 NIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNRNPD 586 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred hHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 34677777777777888887777777778888887777654
No 32
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=32.80 E-value=1.5e+02 Score=28.56 Aligned_cols=25 Identities=12% Similarity=0.295 Sum_probs=20.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 038630 771 GKFFHSMKMFLKEAEEEIARIKADE 795 (885)
Q Consensus 771 d~F~e~m~~Fl~~Ae~ei~~L~~~~ 795 (885)
+-+.+.+..|++++.+.+..|+..+
T Consensus 40 ~~~~ell~~Fl~d~~~~l~~L~~al 64 (153)
T 3us6_A 40 EFVFEVVSLFFDDSERILKDLSFAV 64 (153)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999998887654
No 33
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=30.75 E-value=4.3e+02 Score=26.57 Aligned_cols=50 Identities=4% Similarity=0.012 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCccccCChhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 038630 789 ARIKADERMALSLVKEVTEYFHGNAAKEEAHPFRIFMIVRDFLAILDHVCKEVGKMQER 847 (885)
Q Consensus 789 ~~L~~~~~~a~~~~kel~~YFGEd~~k~e~~P~efF~il~dFl~~ldka~kE~~k~~er 847 (885)
..|+....+..+.-..+.+=|++..+. .-|.+|+..|....+.+...+++
T Consensus 131 ~~L~~a~~e~eeeS~~l~~~F~~~~~e---------~dv~~Fl~~y~~~R~~yH~RreK 180 (192)
T 2p22_C 131 KKLEQNTKKLDEESSQLETTTRSIDSA---------DDLDQFIKNYLDIRTQYHLRREK 180 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCSCCCCH---------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccc---------chHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555666666777778762111 12788999998888887665444
No 34
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=29.20 E-value=1.9e+02 Score=24.60 Aligned_cols=49 Identities=10% Similarity=-0.004 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC----CCCchhhHHHHHHHHHHHHHHHHHHHH
Q 038630 745 SSYVMKLEMGLEKVRLVLQYEK----PDMQGKFFHSMKMFLKEAEEEIARIKA 793 (885)
Q Consensus 745 ~~dv~kLe~gl~kv~~~Lq~~~----~~~~d~F~e~m~~Fl~~Ae~ei~~L~~ 793 (885)
.....+|+..|..++..++... -+....|.+.+..|-..+.+-...|..
T Consensus 18 ~~~~~~i~~~l~~l~~~v~~l~~~W~G~A~~af~~~~~~w~~~~~~~~~~L~~ 70 (94)
T 3fav_B 18 QGNVTSIHSLLDEGKQSLTKLAAAWGGSGSEAYQGVQQKWDATATELNNALQN 70 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTGGGGTCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444443322 223568888888888777765544443
No 35
>3pev_B Nucleoporin GLE1; RECA, heat, DEAD-BOX, ATPase, helicase, mRNA export, nuclear hydrolase; HET: IHP; 2.50A {Saccharomyces cerevisiae} PDB: 3peu_B* 3pex_B* 3pez_B* 3rrm_B* 3rrn_B*
Probab=28.02 E-value=1e+02 Score=33.07 Aligned_cols=99 Identities=8% Similarity=0.147 Sum_probs=51.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccCC
Q 038630 740 DSDVLSSYVMKLEMGLEKVRLVLQYEKPDMQGKFFHSMKMFLKEAEEEIARIKADERMALSLVKEVTEYFHGNAAKEEAH 819 (885)
Q Consensus 740 dld~L~~dv~kLe~gl~kv~~~Lq~~~~~~~d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~~YFGEd~~k~e~~ 819 (885)
|+..|+.++.+-...++.++..+...-+..+..++..+..+-+.....+.+|....+.+.+.+.+|.+.+.+- + .+
T Consensus 4 ~~~~~~~~~~~y~~~i~~ik~~v~~~~~~~n~~lK~~~~~~kR~I~~~igQLt~s~~qi~~i~~~L~~ll~~~--~--~~ 79 (297)
T 3pev_B 4 NFDKISKMFWHYKDKIAQIKQDIVLPIKKADVNVRNLLSRHKRKINPKFGQLTNSNQQLFKIQNELTQLINDT--K--GD 79 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHSCHHHHHHHHHHHHHHTTHHHHCCSBHHHHHHHHHHHHHHHHTT--T--TS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhhhccchhccccCCHHHHHHHHHHHHHHHhCc--c--CC
Confidence 4566677777777777777765532221123345555555555555555566444455566666666666432 2 12
Q ss_pred hhhhHH-HHHHHHHH-HHHHHHHHHH
Q 038630 820 PFRIFM-IVRDFLAI-LDHVCKEVGK 843 (885)
Q Consensus 820 P~efF~-il~dFl~~-ldka~kE~~k 843 (885)
+. .|. ++.-|.+. +.++..|+..
T Consensus 80 ~~-~~~~~ln~lAK~iV~Q~e~ev~~ 104 (297)
T 3pev_B 80 SL-AYHWILNFIAKAVVHQAETEVRV 104 (297)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ch-HHHHHHHHHHHHHHHHHHHHhcc
Confidence 22 233 33444433 3555566643
No 36
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=27.71 E-value=3e+02 Score=29.48 Aligned_cols=10 Identities=40% Similarity=0.610 Sum_probs=5.3
Q ss_pred HHHHHHHHHH
Q 038630 681 LLHFVVQEII 690 (885)
Q Consensus 681 LLhyLvq~Ii 690 (885)
||+.|...++
T Consensus 157 ll~~lld~iv 166 (339)
T 4ev6_A 157 LLYHILNEIT 166 (339)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555454
No 37
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=27.20 E-value=2.8e+02 Score=23.39 Aligned_cols=22 Identities=9% Similarity=0.116 Sum_probs=12.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHH
Q 038630 770 QGKFFHSMKMFLKEAEEEIARI 791 (885)
Q Consensus 770 ~d~F~e~m~~Fl~~Ae~ei~~L 791 (885)
...|.+.+..|-..+..-.+.|
T Consensus 51 ~~af~~~~~~~~~~~~~~~~~L 72 (99)
T 3zbh_A 51 SEAFIQQYQELRPSFEKMAVLL 72 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3577777777665554443333
No 38
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=27.15 E-value=3.6e+02 Score=30.05 Aligned_cols=135 Identities=7% Similarity=0.008 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHhhccccccCCCCCceeeeeccchhcccccccCCC
Q 038630 598 RVEAMLYRANFDAEVKYLRKSYQTLEAASEELKNSRLFLKLLEAVLKTGNRMNVGTNRGDAKAFKLDTLLKLVDIKGTDG 677 (885)
Q Consensus 598 RL~allfk~~F~~~v~~l~~~l~~l~~A~~eLr~S~~L~~lL~~VLaiGN~LN~gt~rG~A~GFkLdSL~KL~dtKs~D~ 677 (885)
||+-++.+.+ .+++..|+.|..-.+.+ ++....+..++..+=|+|... +.+.+++|+
T Consensus 53 rLqg~Ldk~e-----r~~~~rIe~L~~~L~~~--s~s~~~~~~y~~~~~~~lk~~----------------~~q~~dndn 109 (390)
T 1deq_A 53 RMKGLIDEVD-----QDFTSRINKLRDSLFNY--QKNSKDSNTLTKNIVELMRGD----------------FAKANNNDN 109 (390)
T ss_pred hHHHHHHHhh-----hhHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHH----------------HHhhccchH
Q ss_pred Cc-cHHHHHHHHHHHHhCCCCCCccccccccCccchHHHHhhchhhhcccccchhhhhhhcCCCHHHHHHHHHHHHHHHH
Q 038630 678 KT-TLLHFVVQEIIRAEGAGTKSTEVNVESKNSMREDEFKKQGLEVVSGLSRDLSNVKKAAGMDSDVLSSYVMKLEMGLE 756 (885)
Q Consensus 678 k~-TLLhyLvq~Iir~e~~~L~~~n~~~~~~~~~~~E~~~k~gl~~V~~l~~EL~~V~kAAkvdld~L~~dv~kLe~gl~ 756 (885)
.. -+..-|-++|+ .|..--...-.++..|...|.++...|+
T Consensus 110 ~~~e~s~eLe~~i~--------------------------------------~lk~~V~~q~~~ir~Lq~~l~~q~~kiq 151 (390)
T 1deq_A 110 TFKQINEDLRSRIE--------------------------------------ILRRKVIEQVQRINLLQKNVRDQLVDMK 151 (390)
T ss_pred HHHHHHHHHHHHHH--------------------------------------HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhcC-----CCCchhhHHHHHHHHHHHHHHHHHHHH
Q 038630 757 KVRLVLQYEK-----PDMQGKFFHSMKMFLKEAEEEIARIKA 793 (885)
Q Consensus 757 kv~~~Lq~~~-----~~~~d~F~e~m~~Fl~~Ae~ei~~L~~ 793 (885)
+++..++.+. .....--+++=.+.+++-.++|..+.+
T Consensus 152 RLE~~Id~c~~~C~~sC~~~l~~~vD~e~ye~qqKQL~qv~a 193 (390)
T 1deq_A 152 RLEVDIDIKIRSCKGSCSRALEHKVDLEDYKNQQKQLEQVIA 193 (390)
T ss_pred HHHHHHHHHhcccccccchhhhhhccHHHHHHHHHHHHhhhh
No 39
>2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative splicing, coiled coil, SH3 domain, endocytosis, structural genomics, NPPSFA; 2.49A {Homo sapiens}
Probab=26.55 E-value=85 Score=32.23 Aligned_cols=25 Identities=12% Similarity=0.211 Sum_probs=17.4
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHh
Q 038630 607 NFDAEVKYLRKSYQTLEAASEELKN 631 (885)
Q Consensus 607 ~F~~~v~~l~~~l~~l~~A~~eLr~ 631 (885)
++++.+.++...++.+..+|..|..
T Consensus 12 el~~d~~~lE~r~d~~~~~~~~l~k 36 (240)
T 2z0v_A 12 KLDDEFLDMERKIDVTNKVVAEILS 36 (240)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777888888888888876653
No 40
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=26.54 E-value=3e+02 Score=25.17 Aligned_cols=54 Identities=15% Similarity=0.009 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038630 741 SDVLSSYVMKLEMGLEKVRLVLQYEKPDMQGKFFHSMKMFLKEAEEEIARIKADERMALSLV 802 (885)
Q Consensus 741 ld~L~~dv~kLe~gl~kv~~~Lq~~~~~~~d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~ 802 (885)
+-+|..||..|+..++.. |.... .=......|++.++--+++...++.+..+.|
T Consensus 44 lhdl~seV~~LK~dv~~~---L~k~~-----~e~qe~~~FIKa~kvL~~rns~DI~~ire~f 97 (101)
T 4aj5_1 44 LYDLHSEVQTLKDDINIL---LDKAR-----LENQEGIDFIKATKVLMEKNSMDIMKIREYF 97 (101)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHH-----THHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHH-----HHhhHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 345677777776555432 32221 1123566778887777777666665444433
No 41
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=25.49 E-value=3e+02 Score=23.12 Aligned_cols=45 Identities=11% Similarity=0.070 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCccccCChhhhHHHHHHHHHHHHHHHHH
Q 038630 790 RIKADERMALSLVKEVTEYFHGNAAKEEAHPFRIFMIVRDFLAILDHVCKE 840 (885)
Q Consensus 790 ~L~~~~~~a~~~~kel~~YFGEd~~k~e~~P~efF~il~dFl~~ldka~kE 840 (885)
.|+..+..+...+..|...+.++.. ..|...+.++...+.+...-
T Consensus 24 ~l~~~l~~L~~~~~~L~~~W~G~a~------~af~~~~~~~~~~~~~~~~~ 68 (97)
T 2vs0_A 24 QIRQILSDLTRAQGEIAANWEGQAF------SRFEEQFQQLSPKVEKFAQL 68 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCSSTT------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCcHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555566555655433 24555544444444444333
No 42
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=25.29 E-value=2.9e+02 Score=24.93 Aligned_cols=60 Identities=10% Similarity=0.024 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCchhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038630 745 SSYVMKLEMGLEKVRLVLQYEKPDMQGKFF--HSMKMFLKEAEEEIARIKADERMALSLVKEVT 806 (885)
Q Consensus 745 ~~dv~kLe~gl~kv~~~Lq~~~~~~~d~F~--e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~ 806 (885)
..+..+|.+.+..++.++.... .+|.|. .++..=++...++|+.+.+.+......|...+
T Consensus 22 a~~~~~lk~E~~~lk~E~~stS--aQDeFAKWaKL~Rk~DKl~~ele~l~~~l~~~k~~F~~~~ 83 (93)
T 3sjb_C 22 SKKYLAKVKERHELKEFNNSIS--AQDNYAKWTKNNRKLDSLDKEINNLKDEIQSENKAFQAHL 83 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSC--TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677777777777776543 345553 46666677777777777777777777666543
No 43
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=25.15 E-value=3.2e+02 Score=23.29 Aligned_cols=41 Identities=5% Similarity=-0.010 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHhccCCCccccCChhhhHHHHHHHHHHHHHHH
Q 038630 792 KADERMALSLVKEVTEYFHGNAAKEEAHPFRIFMIVRDFLAILDHVC 838 (885)
Q Consensus 792 ~~~~~~a~~~~kel~~YFGEd~~k~e~~P~efF~il~dFl~~ldka~ 838 (885)
+..+..+...+..|..++-+... ..|...+.++...+++..
T Consensus 28 ~~~l~~L~~~~~~l~~~W~G~a~------~aF~~~~~~~~~~~~~~~ 68 (98)
T 3gwk_C 28 TEVLNLLTQEQAVIDENWDGSTF------DSFEAQFNELSPKITEFA 68 (98)
T ss_dssp HHHHHHHHHHHHHHHHHBCSSTT------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccCcHHH------HHHHHHHHHHHHHHHHHH
Confidence 33334444455555555554432 244444444444443333
No 44
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=25.15 E-value=3.8e+02 Score=24.20 Aligned_cols=44 Identities=14% Similarity=0.070 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHH
Q 038630 742 DVLSSYVMKLEMGLEKVRLVLQYEKPDMQGKFFHSMKMFLKEAE 785 (885)
Q Consensus 742 d~L~~dv~kLe~gl~kv~~~Lq~~~~~~~d~F~e~m~~Fl~~Ae 785 (885)
..+..++..|+..|..++.+|...+.-..+.--+.++.|+++..
T Consensus 22 ~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vr 65 (115)
T 3qfl_A 22 KGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVR 65 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHH
T ss_pred hchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHH
Confidence 45678888888888888888865531100111244556665533
No 45
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=24.93 E-value=3.1e+02 Score=23.05 Aligned_cols=36 Identities=6% Similarity=0.079 Sum_probs=20.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 038630 770 QGKFFHSMKMFLKEAEEEIARIKADERMALSLVKEVTEYF 809 (885)
Q Consensus 770 ~d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~~YF 809 (885)
.+.|...+..|...+..-...|.. +.........-|
T Consensus 48 ~~af~~~~~~~~~~~~~~~~~L~~----i~~~L~~~a~~y 83 (97)
T 2vs0_A 48 FSRFEEQFQQLSPKVEKFAQLLEE----IKQQLNSTADAV 83 (97)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 468888888777766655444443 333444444444
No 46
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=24.71 E-value=2.3e+02 Score=25.51 Aligned_cols=60 Identities=15% Similarity=0.212 Sum_probs=37.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcC---CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038630 739 MDSDVLSSYVMKLEMGLEKVRLVLQYEK---PDMQGKFFHSMKMFLKEAEEEIARIKADERMA 798 (885)
Q Consensus 739 vdld~L~~dv~kLe~gl~kv~~~Lq~~~---~~~~d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a 798 (885)
.+-++=...|.+++++|+...+.|+... ......+...|..=+...+.+++.|+.+++.+
T Consensus 31 ~~geerk~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~elk~~ 93 (102)
T 1vcs_A 31 LPPDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRS 93 (102)
T ss_dssp SCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444556666666666665544322 12234567788888888888888888876653
No 47
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=24.14 E-value=3.3e+02 Score=23.16 Aligned_cols=22 Identities=9% Similarity=-0.007 Sum_probs=14.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHH
Q 038630 770 QGKFFHSMKMFLKEAEEEIARI 791 (885)
Q Consensus 770 ~d~F~e~m~~Fl~~Ae~ei~~L 791 (885)
.+.|...+..|...+..-.+.|
T Consensus 50 ~~aF~~~~~~~~~~~~~~~~~L 71 (98)
T 3gwk_C 50 FDSFEAQFNELSPKITEFAQLL 71 (98)
T ss_dssp THHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4688888887766655544433
No 48
>3rh3_A Uncharacterized DUF3829-like protein; all alpha protein, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=23.73 E-value=2e+02 Score=30.49 Aligned_cols=77 Identities=16% Similarity=0.240 Sum_probs=44.0
Q ss_pred chhhHHHHHHHHHHHHHHHHH---HHHHH---HHHHHHHHHHHHhccCCCc---------------------c---ccCC
Q 038630 770 QGKFFHSMKMFLKEAEEEIAR---IKADE---RMALSLVKEVTEYFHGNAA---------------------K---EEAH 819 (885)
Q Consensus 770 ~d~F~e~m~~Fl~~Ae~ei~~---L~~~~---~~a~~~~kel~~YFGEd~~---------------------k---~e~~ 819 (885)
.+.+++.|..|.+.|++.+-. |++++ ++|...+..++..|.-... + ...+
T Consensus 136 k~~ifd~lsp~aeqAE~vlL~DhPLKeqIla~kkm~~~~~~~~~l~~rq~~~D~~rld~~~~el~~qLeaa~kLp~~~~~ 215 (264)
T 3rh3_A 136 KQVIFDILSPLTEQAESELLADEPLKDQIMAMRKMSGTVQSIMNLYSRKHAMDGVRIDLKMAELEKELKAAEKIPAVTGY 215 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHTSCCCTTC
T ss_pred HHHHHHHhhHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHhhcCCCCCCC
Confidence 467888999999998876432 33332 2333444445544442210 0 0112
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhhh
Q 038630 820 PFRIFMIVRDFLAILDHVCKEVGKMQER 847 (885)
Q Consensus 820 P~efF~il~dFl~~ldka~kE~~k~~er 847 (885)
.+--..+++|++..+...+++++..+.
T Consensus 216 -~~e~~~y~~flk~~e~f~~~lrk~k~~ 242 (264)
T 3rh3_A 216 -DEELKNFQSFLSTVKSFMNDMQKARSK 242 (264)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 233456788888888888888886554
No 49
>3r84_A Mediator of RNA polymerase II transcription subun; four-helix bundle, nucleus; HET: MSE; 2.05A {Saccharomyces cerevisiae}
Probab=22.94 E-value=2.2e+02 Score=25.30 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=16.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 038630 821 FRIFMIVRDFLAILDHVCKEVGK 843 (885)
Q Consensus 821 ~efF~il~dFl~~ldka~kE~~k 843 (885)
..|=.-.++|+..|+.+.-.++|
T Consensus 43 ~~F~~~t~~fy~tL~~v~v~Lrk 65 (86)
T 3r84_A 43 PQFENHVKQFYERLDKSTTQLRK 65 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788888888877755544
No 50
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=22.47 E-value=3.5e+02 Score=22.79 Aligned_cols=16 Identities=6% Similarity=0.179 Sum_probs=7.5
Q ss_pred CCCHHHHHHHHHHHHH
Q 038630 738 GMDSDVLSSYVMKLEM 753 (885)
Q Consensus 738 kvdld~L~~dv~kLe~ 753 (885)
+||.+.|..--..+..
T Consensus 8 ~v~~~~l~~~A~~~~~ 23 (99)
T 3zbh_A 8 RLTPEELRGVARQYNV 23 (99)
T ss_dssp -CCHHHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHHHHH
Confidence 4566655544444433
No 51
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=21.93 E-value=2.4e+02 Score=24.74 Aligned_cols=23 Identities=13% Similarity=0.290 Sum_probs=14.2
Q ss_pred chhhHHHHHHHHHHHHHHHHHHH
Q 038630 770 QGKFFHSMKMFLKEAEEEIARIK 792 (885)
Q Consensus 770 ~d~F~e~m~~Fl~~Ae~ei~~L~ 792 (885)
...|...+.+|-..+.+-...|.
T Consensus 55 ~~ay~~~~~~W~~~a~~l~~~L~ 77 (103)
T 4i0x_B 55 AAAYSQAHKEWMDAARELVEGLS 77 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777776665444443
No 52
>2llm_A Amyloid beta A4 protein; alzheimer'S disease, protein fibril; NMR {Homo sapiens} PDB: 2loh_A
Probab=26.65 E-value=20 Score=27.93 Aligned_cols=26 Identities=15% Similarity=0.401 Sum_probs=17.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhc
Q 038630 118 VAIAISVGIVTLGMLSALAFFLYRHR 143 (885)
Q Consensus 118 ~~iai~~~~~~~~~~~~~~~f~~~~r 143 (885)
+.|-++++.++++++.+++.|++|||
T Consensus 18 a~iGL~v~gVai~~vIVvsl~mlRrr 43 (43)
T 2llm_A 18 AIIGLMVGGVVIATVIVITLVMLKKK 43 (43)
Confidence 56666666666777666777777775
No 53
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=21.11 E-value=2.8e+02 Score=30.28 Aligned_cols=98 Identities=13% Similarity=0.048 Sum_probs=57.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH---HHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCc
Q 038630 738 GMDSDVLSSYVMKLEMGLEKVRL---VLQYEKPDMQGKFFHSMKMFLKEAEEEIARIKADERMALSLVKEVTEYFHGNAA 814 (885)
Q Consensus 738 kvdld~L~~dv~kLe~gl~kv~~---~Lq~~~~~~~d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~~YFGEd~~ 814 (885)
+-+...+..++.+|+..+...+. .|... ..-...|..-++.|..-++.|...+..+...|..+..-.-.+..
T Consensus 225 ~k~~~~~~~ei~~l~~~i~~~~~l~~~l~~~-----~~~~~~l~~~I~~Ai~al~~l~~~W~~m~~~~~~l~~~I~~~~~ 299 (346)
T 2nrj_A 225 RDNLGKLEPLLAELRQTVDYKVTLNRVVGVA-----YSNINEMHKALDDAINALTYMSTQWHDLDSQYSGVLGHIENAAQ 299 (346)
T ss_dssp GGGHHHHHHHHHHHHSCCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 34566667777777665533221 22221 12345677778888888999999999999988887766543222
Q ss_pred cccCChhhhHHHHHHHHHHHHHHHHHHHH
Q 038630 815 KEEAHPFRIFMIVRDFLAILDHVCKEVGK 843 (885)
Q Consensus 815 k~e~~P~efF~il~dFl~~ldka~kE~~k 843 (885)
+ +.+.+|- .+.+.+.....-|+++++
T Consensus 300 ~--i~~~~~~-~i~~~L~~a~~~W~~l~~ 325 (346)
T 2nrj_A 300 K--ADQNKFK-FLKPNLNAAKDSWKTLRT 325 (346)
T ss_dssp C--CSTTTTG-GGHHHHHHHHHHHHHHHH
T ss_pred c--CCHHHHH-HHHHHHHHHHhHHHHHHH
Confidence 2 2344433 344444555555555544
No 54
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=20.73 E-value=3e+02 Score=27.80 Aligned_cols=99 Identities=11% Similarity=0.085 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcc---ccCCh
Q 038630 744 LSSYVMKLEMGLEKVRLVLQYEKPDMQGKFFHSMKMFLKEAEEEIARIKADERMALSLVKEVTEYFHGNAAK---EEAHP 820 (885)
Q Consensus 744 L~~dv~kLe~gl~kv~~~Lq~~~~~~~d~F~e~m~~Fl~~Ae~ei~~L~~~~~~a~~~~kel~~YFGEd~~k---~e~~P 820 (885)
|..+|..+++.+..++..+..... ..+.+..++.....++...+..|++.+.........+..|.-+-... -+..-
T Consensus 47 LE~eL~~~Ek~~~~L~~~~~~L~~-E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~ 125 (189)
T 2v71_A 47 LEAQLVQAEQRNRDLQADNQRLKY-EVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAK 125 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 444455555544444433322110 02456677777777777778888887777666666666665421000 00011
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHH
Q 038630 821 FRIFMIVRDFLAILDHVCKEVGK 843 (885)
Q Consensus 821 ~efF~il~dFl~~ldka~kE~~k 843 (885)
-..-..+.||-..|++|...+.-
T Consensus 126 R~~~~SleD~e~kln~aiEr~al 148 (189)
T 2v71_A 126 RATIMSLEDFEQRLNQAIERNAF 148 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHH
Confidence 12345688999999988866554
No 55
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=20.48 E-value=4.6e+02 Score=26.38 Aligned_cols=19 Identities=5% Similarity=-0.146 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 038630 741 SDVLSSYVMKLEMGLEKVR 759 (885)
Q Consensus 741 ld~L~~dv~kLe~gl~kv~ 759 (885)
++.+...+..+++.++++.
T Consensus 54 Fe~~~~~f~~~e~~~~~l~ 72 (251)
T 2fic_A 54 FEQCVQNFNKQLTEGTRLQ 72 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444433
No 56
>2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative splicing, coiled coil, SH3 domain, endocytosis, structural genomics, NPPSFA; 2.49A {Homo sapiens}
Probab=20.11 E-value=6.9e+02 Score=25.28 Aligned_cols=24 Identities=8% Similarity=0.162 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Q 038630 608 FDAEVKYLRKSYQTLEAASEELKN 631 (885)
Q Consensus 608 F~~~v~~l~~~l~~l~~A~~eLr~ 631 (885)
++.+++.++.....+.+.++...+
T Consensus 20 lE~r~d~~~~~~~~l~k~~~~yl~ 43 (240)
T 2z0v_A 20 MERKIDVTNKVVAEILSKTTEYLQ 43 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC
Confidence 345566666777777777776655
No 57
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=20.02 E-value=2.7e+02 Score=26.14 Aligned_cols=48 Identities=23% Similarity=0.186 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHH---HHHHHHHHHH
Q 038630 743 VLSSYVMKLEMGLEKVRLVLQYEKPDMQGKFFHSMKMFLKE---AEEEIARIKA 793 (885)
Q Consensus 743 ~L~~dv~kLe~gl~kv~~~Lq~~~~~~~d~F~e~m~~Fl~~---Ae~ei~~L~~ 793 (885)
.+.+|++.|.+.|++++..+.....-.+. +.+..|.++ -..+|..|+.
T Consensus 7 ~~K~Eiq~L~drLD~~~rKlaaa~~rgd~---~~i~qf~~E~~~l~k~I~~lk~ 57 (123)
T 2lf0_A 7 VEKNEIKRLSDRLDAIRHQQADLSLVEAA---DKYAELEKEKATLEAEIARLRE 57 (123)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHSCTTTCT---THHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 45788999999999998877665422222 345555444 3334444443
Done!