BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038631
(185 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WS7|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS8|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
Length = 109
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 58/100 (58%), Gaps = 5/100 (5%)
Query: 38 QVGGNRGWVVPPANDSKIYNDWASENRFQVGDTIRFKY--KKDSVMEVTDKEYKKCNSTH 95
+VG + GW D Y WAS N+F VGD++ F Y K +V++V +++K CNS+
Sbjct: 6 KVGDSTGWTTLVPYD---YAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSSS 62
Query: 96 PIFFSNTGNTAFRLDHPGPFYFISGASGHCEKGQRMIIKV 135
P +G + L PG FYF+ G GHC+ GQ++ IKV
Sbjct: 63 PAASYTSGADSIPLKRPGTFYFLCGIPGHCQLGQKVEIKV 102
>pdb|1X9R|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The
Oxidised Form
pdb|1X9R|B Chain B, Umecyanin From Horse Raddish- Crystal Structure Of The
Oxidised Form
pdb|1X9U|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The
Reduced Form
pdb|1X9U|B Chain B, Umecyanin From Horse Raddish- Crystal Structure Of The
Reduced Form
Length = 116
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 36 EFQVGGNRGWVVPPANDSKIYNDWASENRFQVGDTIRFKYKKD--SVMEVTDKEYKKCNS 93
++ VGG+ W P +D K Y WA+ F+VGD + F + V VT + C
Sbjct: 3 DYDVGGDMEWKRP--SDPKFYITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKK 60
Query: 94 THPIFFSNTGNTAFRLDHPGPFYFISGASGHCEKGQRMIIKVM 136
+PI T L+ GP Y+I HC GQ++ I V+
Sbjct: 61 ENPISHMTTPPVKIMLNTTGPQYYICTVGDHCRVGQKLSINVV 103
>pdb|1JER|A Chain A, Cucumber Stellacyanin, Cu2+, Ph 7.0
Length = 138
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 53/108 (49%), Gaps = 18/108 (16%)
Query: 39 VGGNRGWVVPPANDSKIYNDWASENRFQVGDTIRFKYKKDS--VMEV-TDKEYKKCNSTH 95
VG N GW VP + Y+ WA+ F+VGD+++F + ++ V E+ T + + CN
Sbjct: 8 VGDNTGWSVPSS--PNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACN--- 62
Query: 96 PIFFSNTGN-------TAFRLDHPGPFYFISGASGHCEKGQRMIIKVM 136
F N+ N RLD G YF+ HC GQ++ I V+
Sbjct: 63 ---FVNSDNDVERTSPVIERLDELGMHYFVCTVGTHCSNGQKLSINVV 107
>pdb|2CBP|A Chain A, Cucumber Basic Protein, A Blue Copper Protein
Length = 96
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 10/102 (9%)
Query: 37 FQVGGNRGWVVPPANDSKIYNDWASENRFQVGDTIRFKYKKD--SVMEVTDKEYKKCNST 94
+ VGG+ GW W RF+ GD + F Y +V+ V + CN+
Sbjct: 3 YVVGGSGGWTFNT-------ESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTP 55
Query: 95 HPIFFSNTGNTAFRLDHPGPFYFISGASGHCEKGQRMIIKVM 136
+G +L G YFI GHC+ G ++ + +
Sbjct: 56 AGAKVYTSGRDQIKLPK-GQSYFICNFPGHCQSGMKIAVNAL 96
>pdb|1F56|A Chain A, Spinach Plantacyanin
pdb|1F56|B Chain B, Spinach Plantacyanin
pdb|1F56|C Chain C, Spinach Plantacyanin
Length = 91
Score = 36.6 bits (83), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 60 ASENRFQVGDTIRFKYKKD--SVMEVTDKEYKKCNSTHPIFFSNTGNTAFRLDHPGPFYF 117
A F+ GD + FKY K +V+ V + Y C++ ++G +L G YF
Sbjct: 14 ARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTYSSGQDRIKLTR-GQNYF 72
Query: 118 ISGASGHCEKGQRMII 133
I GHC G ++ I
Sbjct: 73 ICSFPGHCGGGMKIAI 88
>pdb|3L04|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
E92p Mutant Complexed With Carbamyl Phosphate And N-
Succinyl-L-Norvaline
Length = 359
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 56 YNDWASENRFQVGDTIRFKYKKDSVMEVTDKEYKKCNSTHPIFFSN 101
Y DWA++N + G +++ + DS D Y K P FF N
Sbjct: 238 YMDWAAQNVAESGGSLQVSHDIDSAYAGADVVYAKSWGALP-FFGN 282
>pdb|3L05|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
E92s Mutant Complexed With Carbamyl Phosphate And
N-Succinyl-L-Norvaline
Length = 359
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 56 YNDWASENRFQVGDTIRFKYKKDSVMEVTDKEYKKCNSTHPIFFSN 101
Y DWA++N + G +++ + DS D Y K P FF N
Sbjct: 238 YMDWAAQNVAESGGSLQVSHDIDSAYAGADVVYAKSWGALP-FFGN 282
>pdb|3L06|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
E92v Mutant Complexed With Carbamyl Phosphate And N-
Succinyl-L-Norvaline
Length = 359
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 56 YNDWASENRFQVGDTIRFKYKKDSVMEVTDKEYKKCNSTHPIFFSN 101
Y DWA++N + G +++ + DS D Y K P FF N
Sbjct: 238 YMDWAAQNVAESGGSLQVSHDIDSAYAGADVVYAKSWGALP-FFGN 282
>pdb|3M4N|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
K302a Mutant Complexed With Palao
Length = 359
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 56 YNDWASENRFQVGDTIRFKYKKDSVMEVTDKEYKKCNSTHPIFFSN 101
Y DWA++N + G +++ + DS D Y K P FF N
Sbjct: 238 YMDWAAQNVAESGGSLQVSHDIDSAYAGADVVYAKSWGALP-FFGN 282
>pdb|3L02|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
E92a Mutant Complexed With Carbamyl Phosphate And N-
Succinyl-L-Norvaline
Length = 359
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 56 YNDWASENRFQVGDTIRFKYKKDSVMEVTDKEYKKCNSTHPIFFSN 101
Y DWA++N + G +++ + DS D Y K P FF N
Sbjct: 238 YMDWAAQNVAESGGSLQVSHDIDSAYAGADVVYAKSWGALP-FFGN 282
>pdb|3KZC|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
pdb|3KZK|A Chain A, Crystal Structure Of Acetylornithine Transcarbamylase
Complexed With Acetylcitrulline
pdb|3KZM|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
Complexed With Carbamyl Phosphate
pdb|3KZN|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
Complexed With N-Acetyl-L-Ornirthine
pdb|3KZO|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
Complexed With Carbamyl Phosphate And
N-Acetyl-L-Norvaline
pdb|3M4J|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
Complexed With Palao
Length = 359
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 56 YNDWASENRFQVGDTIRFKYKKDSVMEVTDKEYKKCNSTHPIFFSN 101
Y DWA++N + G +++ + DS D Y K P FF N
Sbjct: 238 YMDWAAQNVAESGGSLQVSHDIDSAYAGADVVYAKSWGALP-FFGN 282
>pdb|3M5D|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
K302r Mutant Complexed With Palao
Length = 359
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 56 YNDWASENRFQVGDTIRFKYKKDSVMEVTDKEYKKCNSTHPIFFSN 101
Y DWA++N + G +++ + DS D Y K P FF N
Sbjct: 238 YMDWAAQNVAESGGSLQVSHDIDSAYAGADVVYAKSWGALP-FFGN 282
>pdb|3M5C|A Chain A, Crystal Structure Of N-Acetyl-L-Ornithine Transcarbamylase
K302e Mutant Complexed With Palao
Length = 359
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 56 YNDWASENRFQVGDTIRFKYKKDSVMEVTDKEYKKCNSTHPIFFSN 101
Y DWA++N + G +++ + DS D Y K P FF N
Sbjct: 238 YMDWAAQNVAESGGSLQVSHDIDSAYAGADVVYAKSWGALP-FFGN 282
>pdb|3NRK|A Chain A, The Crystal Structure Of The Leptospiral Hypothetical
Protein Lic12922
Length = 325
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 17/80 (21%)
Query: 47 VPPANDSKIYNDWASENRFQVGDTIRFKY-----KKDSVMEVTDKEYKKCNSTHPIFFSN 101
VPP N+ +I + W ++N+ +VG IR++ + DS+ E ++ YK+ + ++
Sbjct: 137 VPPPNEQEIRS-WYNQNKDKVGFEIRYRIISIAPENDSIQE-ENRLYKEVSEIRKSILAD 194
Query: 102 TGNTAFRLDHPGPFYFISGA 121
P F I+G+
Sbjct: 195 ----------PSSFALIAGS 204
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,926,835
Number of Sequences: 62578
Number of extensions: 182804
Number of successful extensions: 357
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 341
Number of HSP's gapped (non-prelim): 15
length of query: 185
length of database: 14,973,337
effective HSP length: 93
effective length of query: 92
effective length of database: 9,153,583
effective search space: 842129636
effective search space used: 842129636
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)