Query 038631
Match_columns 185
No_of_seqs 171 out of 814
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 13:01:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038631.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038631hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03148 Blue copper-like prot 100.0 1.6E-43 3.6E-48 288.1 15.1 117 21-143 7-125 (167)
2 PF02298 Cu_bind_like: Plastoc 100.0 1.5E-32 3.3E-37 201.1 5.7 83 45-129 1-85 (85)
3 PRK02710 plastocyanin; Provisi 98.4 3.5E-06 7.5E-11 64.8 10.3 69 62-136 48-119 (119)
4 PF00127 Copper-bind: Copper b 98.1 1.8E-05 3.9E-10 58.6 8.2 73 62-136 18-99 (99)
5 TIGR02656 cyanin_plasto plasto 98.0 4.6E-05 1E-09 56.5 8.0 72 62-136 18-99 (99)
6 TIGR03102 halo_cynanin halocya 97.8 0.00016 3.5E-09 55.9 8.2 87 33-136 22-115 (115)
7 TIGR02375 pseudoazurin pseudoa 97.6 0.00025 5.5E-09 54.9 7.7 72 62-138 16-89 (116)
8 COG3794 PetE Plastocyanin [Ene 97.6 0.00061 1.3E-08 53.9 8.8 67 62-136 55-127 (128)
9 TIGR02657 amicyanin amicyanin. 96.6 0.011 2.4E-07 42.4 7.2 68 63-136 13-83 (83)
10 TIGR03095 rusti_cyanin rusticy 96.6 0.0074 1.6E-07 48.4 6.5 33 104-136 116-148 (148)
11 PF06525 SoxE: Sulfocyanin (So 96.4 0.016 3.5E-07 48.9 7.5 76 65-140 90-190 (196)
12 KOG3858 Ephrin, ligand for Eph 95.6 0.2 4.4E-06 43.4 11.1 76 64-139 46-163 (233)
13 PF13473 Cupredoxin_1: Cupredo 94.6 0.036 7.8E-07 40.9 3.1 65 62-135 36-104 (104)
14 PF00812 Ephrin: Ephrin; Inte 94.1 0.088 1.9E-06 42.4 4.7 73 64-136 25-144 (145)
15 TIGR03094 sulfo_cyanin sulfocy 94.1 0.075 1.6E-06 44.7 4.4 31 110-140 159-189 (195)
16 COG4454 Uncharacterized copper 93.4 0.13 2.9E-06 42.0 4.5 36 101-136 122-157 (158)
17 TIGR03096 nitroso_cyanin nitro 90.7 0.46 1E-05 37.9 4.5 53 62-125 62-122 (135)
18 PF07732 Cu-oxidase_3: Multico 82.2 1.3 2.7E-05 33.9 2.7 76 63-138 28-116 (117)
19 PLN02604 oxidoreductase 81.0 9.7 0.00021 36.6 8.7 35 105-139 112-146 (566)
20 PLN02835 oxidoreductase 81.0 23 0.00049 34.0 11.2 76 63-138 62-149 (539)
21 TIGR02866 CoxB cytochrome c ox 80.0 5.9 0.00013 32.8 6.1 68 63-138 119-193 (201)
22 PRK02888 nitrous-oxide reducta 78.7 3.9 8.6E-05 40.2 5.3 70 63-137 557-634 (635)
23 TIGR02376 Cu_nitrite_red nitri 78.6 10 0.00022 33.7 7.5 74 63-139 61-148 (311)
24 PRK10378 inactive ferrous ion 74.4 15 0.00033 33.9 7.7 30 103-137 88-117 (375)
25 PF00116 COX2: Cytochrome C ox 74.1 6.2 0.00013 30.3 4.4 63 63-136 48-120 (120)
26 PF07172 GRP: Glycine rich pro 73.7 1.7 3.7E-05 32.6 1.1 28 10-37 1-28 (95)
27 PLN00044 multi-copper oxidase- 73.4 17 0.00038 35.4 8.2 73 63-139 62-150 (596)
28 PF02839 CBM_5_12: Carbohydrat 70.0 2.3 5E-05 26.3 0.9 19 56-74 1-19 (41)
29 TIGR02695 azurin azurin. Azuri 69.6 5.4 0.00012 31.6 3.1 30 104-134 90-124 (125)
30 COG1622 CyoA Heme/copper-type 67.8 13 0.00029 32.3 5.5 71 63-139 139-214 (247)
31 PF15183 MRAP: Melanocortin-2 63.3 7.1 0.00015 29.1 2.5 23 160-182 39-61 (90)
32 TIGR02228 sigpep_I_arch signal 63.2 20 0.00044 28.9 5.4 16 62-77 58-73 (158)
33 MTH00047 COX2 cytochrome c oxi 61.8 12 0.00025 31.4 3.9 32 106-139 159-193 (194)
34 PLN02354 copper ion binding / 61.5 1E+02 0.0022 29.7 10.7 73 63-139 60-148 (552)
35 PF05454 DAG1: Dystroglycan (D 60.7 2.8 6.1E-05 37.4 0.0 60 68-133 47-116 (290)
36 PLN02991 oxidoreductase 60.3 1.4E+02 0.0031 28.8 11.4 76 63-138 61-148 (543)
37 TIGR03388 ascorbase L-ascorbat 60.2 23 0.00051 33.7 6.1 35 105-139 89-123 (541)
38 TIGR01480 copper_res_A copper- 53.5 37 0.0008 33.0 6.3 84 45-135 488-586 (587)
39 PLN02191 L-ascorbate oxidase 52.2 36 0.00078 32.9 6.0 77 63-139 56-145 (574)
40 PF07731 Cu-oxidase_2: Multico 47.3 36 0.00078 25.5 4.2 75 63-137 36-136 (138)
41 KOG1546 Metacaspase involved i 46.3 9.9 0.00022 34.9 1.1 15 64-78 134-148 (362)
42 PF11132 SplA: Transcriptional 45.0 16 0.00034 26.5 1.7 26 63-88 4-32 (75)
43 cd06555 ASCH_PF0470_like ASC-1 44.3 11 0.00025 28.9 1.0 14 63-76 30-43 (109)
44 PF14326 DUF4384: Domain of un 42.0 1.2E+02 0.0026 21.3 6.7 14 64-77 2-15 (83)
45 PLN02792 oxidoreductase 41.3 42 0.0009 32.3 4.5 42 100-141 466-509 (536)
46 KOG1263 Multicopper oxidases [ 41.1 52 0.0011 32.0 5.1 44 99-142 497-542 (563)
47 PLN02168 copper ion binding / 39.9 1E+02 0.0022 29.8 6.9 77 63-139 59-147 (545)
48 PRK09723 putative fimbrial-lik 38.6 2.9E+02 0.0062 26.2 9.4 18 27-44 20-37 (421)
49 PF12961 DUF3850: Domain of Un 38.5 18 0.0004 26.0 1.3 13 62-74 26-38 (72)
50 MTH00140 COX2 cytochrome c oxi 38.1 45 0.00097 28.3 3.8 31 106-138 183-216 (228)
51 PLN02792 oxidoreductase 36.1 1.2E+02 0.0026 29.2 6.7 76 63-138 49-136 (536)
52 TIGR01480 copper_res_A copper- 32.4 1.2E+02 0.0025 29.7 6.0 75 63-138 78-163 (587)
53 TIGR03389 laccase laccase, pla 32.2 1.3E+02 0.0029 28.6 6.4 78 64-142 37-127 (539)
54 PTZ00047 cytochrome c oxidase 32.0 65 0.0014 26.5 3.7 30 106-137 116-148 (162)
55 MTH00154 COX2 cytochrome c oxi 31.8 66 0.0014 27.4 3.9 30 106-137 183-215 (227)
56 smart00495 ChtBD3 Chitin-bindi 31.4 26 0.00055 21.5 1.0 18 56-73 1-18 (41)
57 MTH00168 COX2 cytochrome c oxi 30.3 70 0.0015 27.2 3.7 31 106-138 183-216 (225)
58 MTH00129 COX2 cytochrome c oxi 29.5 66 0.0014 27.5 3.5 31 106-138 183-216 (230)
59 MTH00117 COX2 cytochrome c oxi 28.8 79 0.0017 26.9 3.8 30 106-137 183-215 (227)
60 KOG3416 Predicted nucleic acid 28.5 59 0.0013 26.0 2.7 31 36-74 40-71 (134)
61 MTH00098 COX2 cytochrome c oxi 28.2 77 0.0017 27.0 3.7 31 106-138 183-216 (227)
62 PF10377 ATG11: Autophagy-rela 28.2 99 0.0021 24.1 4.0 15 63-77 41-55 (129)
63 MTH00139 COX2 cytochrome c oxi 28.0 77 0.0017 26.8 3.6 31 106-138 183-216 (226)
64 PF06462 Hyd_WA: Propeller; I 27.0 1.3E+02 0.0028 17.8 3.5 25 106-130 3-27 (32)
65 COG3627 PhnJ Uncharacterized e 26.6 41 0.00089 29.4 1.7 24 105-128 257-280 (291)
66 PF13807 GNVR: G-rich domain o 26.3 1.4E+02 0.003 20.9 4.2 27 149-175 50-77 (82)
67 TIGR01433 CyoA cytochrome o ub 26.2 80 0.0017 26.9 3.4 31 106-138 182-215 (226)
68 MTH00038 COX2 cytochrome c oxi 26.1 94 0.002 26.5 3.8 31 106-138 183-216 (229)
69 PF04014 Antitoxin-MazE: Antid 25.9 41 0.0009 21.2 1.3 33 38-78 2-34 (47)
70 KOG2315 Predicted translation 25.7 1.5E+02 0.0033 29.0 5.4 61 60-120 210-278 (566)
71 PF10731 Anophelin: Thrombin i 24.9 33 0.00071 24.1 0.6 30 16-45 4-33 (65)
72 PF09451 ATG27: Autophagy-rela 24.8 57 0.0012 28.2 2.3 26 31-61 220-245 (268)
73 PF15345 TMEM51: Transmembrane 24.1 94 0.002 27.1 3.4 19 161-179 60-78 (233)
74 TIGR01432 QOXA cytochrome aa3 24.1 92 0.002 26.1 3.4 31 106-138 173-206 (217)
75 MTH00023 COX2 cytochrome c oxi 23.7 1E+02 0.0023 26.4 3.7 31 106-138 194-227 (240)
76 KOG1263 Multicopper oxidases [ 23.2 4E+02 0.0086 26.0 7.9 79 63-142 61-152 (563)
77 KOG3653 Transforming growth fa 22.9 2.2E+02 0.0048 27.7 5.9 17 112-128 111-128 (534)
78 PF09792 But2: Ubiquitin 3 bin 22.8 1.3E+02 0.0027 24.0 3.8 32 106-140 100-131 (143)
79 MTH00008 COX2 cytochrome c oxi 22.3 1.1E+02 0.0025 26.0 3.6 31 106-138 183-216 (228)
80 PLN02835 oxidoreductase 22.1 1.4E+02 0.0031 28.6 4.6 41 101-141 475-517 (539)
81 PLN02991 oxidoreductase 21.6 1.4E+02 0.0031 28.8 4.5 42 101-142 474-517 (543)
82 PF12911 OppC_N: N-terminal TM 21.2 93 0.002 19.9 2.3 23 162-184 16-38 (56)
83 PF07172 GRP: Glycine rich pro 21.1 74 0.0016 23.7 1.9 23 9-31 3-25 (95)
84 PLN02354 copper ion binding / 20.9 1.9E+02 0.004 28.0 5.1 41 101-141 482-524 (552)
85 MTH00076 COX2 cytochrome c oxi 20.9 1.2E+02 0.0026 25.8 3.5 30 106-137 183-215 (228)
86 MTH00051 COX2 cytochrome c oxi 20.5 1.2E+02 0.0026 26.0 3.4 31 106-138 187-220 (234)
87 PF01345 DUF11: Domain of unkn 20.4 66 0.0014 21.9 1.5 22 55-76 27-48 (76)
88 KOG3342 Signal peptidase I [In 20.1 35 0.00076 28.3 0.1 21 63-83 76-102 (180)
No 1
>PLN03148 Blue copper-like protein; Provisional
Probab=100.00 E-value=1.6e-43 Score=288.10 Aligned_cols=117 Identities=27% Similarity=0.518 Sum_probs=103.3
Q ss_pred HHHHHHhcccceeeEEEEEeCCCCCCCCCCCCCcchhhhccCCeeeeccEeeEEeeC--CcEEEEcccccCCCCCCCCce
Q 038631 21 AIIISSIHHLPVHSLEFQVGGNRGWVVPPANDSKIYNDWASENRFQVGDTIRFKYKK--DSVMEVTDKEYKKCNSTHPIF 98 (185)
Q Consensus 21 ~l~~~~l~~~~a~A~~~~VGg~~GW~~p~~~~~~~Y~~Wa~~~tF~vGD~LvF~y~~--hsV~~V~~~~Y~~C~~s~pi~ 98 (185)
+++++.++...+.|++|+|||+.||+. ..+|++|+++|+|++||+|+|+|++ |||+||++++|++|+.++|+.
T Consensus 7 ~~~~~~~~~~~~~a~~~~VGd~~GW~~-----~~~Y~~WA~~k~F~VGD~LvF~Y~~~~hnV~~V~~~~Y~~C~~~~pi~ 81 (167)
T PLN03148 7 FCFFALFSASATTATDHIVGANKGWNP-----GINYTLWANNQTFYVGDLISFRYQKTQYNVFEVNQTGYDNCTTEGAAG 81 (167)
T ss_pred HHHHHHHhhhhccceEEEeCCCCCcCC-----CCChhHhhcCCCCccCCEEEEEecCCCceEEEEChHHcCcccCCCCcc
Confidence 333334445677899999999999984 3479999999999999999999985 999999999999999999999
Q ss_pred eeCCCCeEEEecCcccEEEEeCCCCCCCCCCeEEEEEecCCCCCC
Q 038631 99 FSNTGNTAFRLDHPGPFYFISGASGHCEKGQRMIIKVMYHEESSP 143 (185)
Q Consensus 99 ~~~~G~~~v~L~~~G~~YFiCgv~~HC~~GmKl~I~V~~~~~p~~ 143 (185)
.+++|++.|+|+++|+|||||+ .+||++||||.|+|.+.++||+
T Consensus 82 ~~tsG~d~v~L~~~G~~YFIcg-~ghC~~GmKl~I~V~~~~~pp~ 125 (167)
T PLN03148 82 NWTSGKDFIPLNKAKRYYFICG-NGQCFNGMKVTILVHPLPPPPS 125 (167)
T ss_pred eecCCCcEEEecCCccEEEEcC-CCccccCCEEEEEEcCCCCCCC
Confidence 9999999999999999999999 6999999999999987654443
No 2
>PF02298 Cu_bind_like: Plastocyanin-like domain; InterPro: IPR003245 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved. This domain is found in a variety of plant cyanins and pollern allergen. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 3.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1JER_A 1WS7_A 1WS8_D 1F56_B 1X9R_B 1X9U_A 2CBP_A.
Probab=99.97 E-value=1.5e-32 Score=201.13 Aligned_cols=83 Identities=49% Similarity=1.021 Sum_probs=68.3
Q ss_pred CCCCCCCCCcchhhhccCCeeeeccEeeEEeeC--CcEEEEcccccCCCCCCCCceeeCCCCeEEEecCcccEEEEeCCC
Q 038631 45 WVVPPANDSKIYNDWASENRFQVGDTIRFKYKK--DSVMEVTDKEYKKCNSTHPIFFSNTGNTAFRLDHPGPFYFISGAS 122 (185)
Q Consensus 45 W~~p~~~~~~~Y~~Wa~~~tF~vGD~LvF~y~~--hsV~~V~~~~Y~~C~~s~pi~~~~~G~~~v~L~~~G~~YFiCgv~ 122 (185)
|+++++ ..+|++||++|+|+|||+|+|+|++ |+|+||++++|++|+.++|+..+++|++.|+|+++|++||||+++
T Consensus 1 W~~~~~--~~~Y~~Wa~~~~F~vGD~LvF~y~~~~h~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~L~~~G~~YFic~~~ 78 (85)
T PF02298_consen 1 WTIPTN--ASNYTDWASGKTFRVGDTLVFNYDSGQHSVVEVSKADYDSCNSSNPISTYSTGNDTVTLTKPGPHYFICGVP 78 (85)
T ss_dssp SSSSSS--TTHHHHHHCTS-BETTEEEEEE--TTTB-EEEESHHHHHHT--STTSEEE-SSEEEEEE-SSEEEEEE--ST
T ss_pred CccCCC--ccchhHhhcCCcEeCCCEEEEEecCCCCeEEecChhhCccCCCCCceecccCCCEEEEeCCCcCeEEEeCCC
Confidence 888654 3799999999999999999999996 999999999999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 038631 123 GHCEKGQ 129 (185)
Q Consensus 123 ~HC~~Gm 129 (185)
+||++||
T Consensus 79 ~HC~~Gq 85 (85)
T PF02298_consen 79 GHCQKGQ 85 (85)
T ss_dssp TTTTTT-
T ss_pred CcccccC
Confidence 9999998
No 3
>PRK02710 plastocyanin; Provisional
Probab=98.41 E-value=3.5e-06 Score=64.78 Aligned_cols=69 Identities=16% Similarity=0.213 Sum_probs=46.7
Q ss_pred CCeeeeccEeeEEeeC---CcEEEEcccccCCCCCCCCceeeCCCCeEEEecCcccEEEEeCCCCCCCCCCeEEEEEe
Q 038631 62 ENRFQVGDTIRFKYKK---DSVMEVTDKEYKKCNSTHPIFFSNTGNTAFRLDHPGPFYFISGASGHCEKGQRMIIKVM 136 (185)
Q Consensus 62 ~~tF~vGD~LvF~y~~---hsV~~V~~~~Y~~C~~s~pi~~~~~G~~~v~L~~~G~~YFiCgv~~HC~~GmKl~I~V~ 136 (185)
..++++||++.|.-.. |++.- +. .+....+ ......+...+++++++|.|-|+|. .|=+.|||..|.|.
T Consensus 48 ~i~v~~Gd~V~~~N~~~~~H~v~~-~~--~~~~~~~-~~~~~pg~t~~~tF~~~G~y~y~C~--~H~~~gM~G~I~V~ 119 (119)
T PRK02710 48 TLTIKAGDTVKWVNNKLAPHNAVF-DG--AKELSHK-DLAFAPGESWEETFSEAGTYTYYCE--PHRGAGMVGKITVE 119 (119)
T ss_pred EEEEcCCCEEEEEECCCCCceEEe-cC--Ccccccc-ccccCCCCEEEEEecCCEEEEEEcC--CCccCCcEEEEEEC
Confidence 4689999999998642 88753 11 1111111 1111222346888999999999998 79889999999984
No 4
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=98.12 E-value=1.8e-05 Score=58.57 Aligned_cols=73 Identities=23% Similarity=0.331 Sum_probs=50.9
Q ss_pred CCeeeeccEeeEEeeC---CcEEEEccc--ccCCCCCCCC---ceeeCCC-CeEEEecCcccEEEEeCCCCCCCCCCeEE
Q 038631 62 ENRFQVGDTIRFKYKK---DSVMEVTDK--EYKKCNSTHP---IFFSNTG-NTAFRLDHPGPFYFISGASGHCEKGQRMI 132 (185)
Q Consensus 62 ~~tF~vGD~LvF~y~~---hsV~~V~~~--~Y~~C~~s~p---i~~~~~G-~~~v~L~~~G~~YFiCgv~~HC~~GmKl~ 132 (185)
..++++||++.|.... |++...... .-.......+ ......| ...++++++|.|.|+|. + |.+.||+-.
T Consensus 18 ~i~V~~G~tV~~~n~~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~~~G~y~y~C~-P-H~~~GM~G~ 95 (99)
T PF00127_consen 18 EITVKAGDTVTFVNNDSMPHNVVFVADGMPAGADSDYVPPGDSSPLLAPGETYSVTFTKPGTYEYYCT-P-HYEAGMVGT 95 (99)
T ss_dssp EEEEETTEEEEEEEESSSSBEEEEETTSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEESSEEEEEEET-T-TGGTTSEEE
T ss_pred EEEECCCCEEEEEECCCCCceEEEecccccccccccccCccccceecCCCCEEEEEeCCCeEEEEEcC-C-CcccCCEEE
Confidence 4689999999999952 999887521 0111211111 1122334 35788889999999999 8 999999999
Q ss_pred EEEe
Q 038631 133 IKVM 136 (185)
Q Consensus 133 I~V~ 136 (185)
|.|.
T Consensus 96 i~V~ 99 (99)
T PF00127_consen 96 IIVE 99 (99)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 9984
No 5
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=97.97 E-value=4.6e-05 Score=56.53 Aligned_cols=72 Identities=19% Similarity=0.232 Sum_probs=47.7
Q ss_pred CCeeeeccEeeEEeeC---CcEEEEcccccC------CCCCC-CCceeeCCCCeEEEecCcccEEEEeCCCCCCCCCCeE
Q 038631 62 ENRFQVGDTIRFKYKK---DSVMEVTDKEYK------KCNST-HPIFFSNTGNTAFRLDHPGPFYFISGASGHCEKGQRM 131 (185)
Q Consensus 62 ~~tF~vGD~LvF~y~~---hsV~~V~~~~Y~------~C~~s-~pi~~~~~G~~~v~L~~~G~~YFiCgv~~HC~~GmKl 131 (185)
..++++||++.|+... |++.-.+.. .. ..... +......+....++++.+|.+-|+|. +|++.||+.
T Consensus 18 ~i~v~~G~~V~~~N~~~~~H~~~~~~~~-~~~~~~~~~~~~~~~~~~~~pG~t~~~tF~~~G~y~y~C~--~H~~aGM~G 94 (99)
T TIGR02656 18 KISIAAGDTVEWVNNKGGPHNVVFDEDA-VPAGVKELAKSLSHKDLLNSPGESYEVTFSTPGTYTFYCE--PHRGAGMVG 94 (99)
T ss_pred EEEECCCCEEEEEECCCCCceEEECCCC-CccchhhhcccccccccccCCCCEEEEEeCCCEEEEEEcC--CccccCCEE
Confidence 4689999999999653 887653211 00 00110 00111122345888899999999998 899999999
Q ss_pred EEEEe
Q 038631 132 IIKVM 136 (185)
Q Consensus 132 ~I~V~ 136 (185)
.|.|.
T Consensus 95 ~I~V~ 99 (99)
T TIGR02656 95 KITVE 99 (99)
T ss_pred EEEEC
Confidence 99984
No 6
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=97.77 E-value=0.00016 Score=55.92 Aligned_cols=87 Identities=17% Similarity=0.339 Sum_probs=58.3
Q ss_pred eeEEEEEe--CC-CCCCCCCCCCCcchhhhccCCeeeeccEeeEEeeC----CcEEEEcccccCCCCCCCCceeeCCCCe
Q 038631 33 HSLEFQVG--GN-RGWVVPPANDSKIYNDWASENRFQVGDTIRFKYKK----DSVMEVTDKEYKKCNSTHPIFFSNTGNT 105 (185)
Q Consensus 33 ~A~~~~VG--g~-~GW~~p~~~~~~~Y~~Wa~~~tF~vGD~LvF~y~~----hsV~~V~~~~Y~~C~~s~pi~~~~~G~~ 105 (185)
...+..|| ++ .+..+.|. ..++++||++.|++.. |+|.-.....|+. .......+...
T Consensus 22 ~~~~v~~G~~~~~g~~~F~P~-----------~ltV~~GdTVtw~~~~d~~~HnV~s~~~~~f~s----~~~~~~~G~t~ 86 (115)
T TIGR03102 22 DEVTVDVGAEANGGGFAFDPP-----------AIRVDPGTTVVWEWTGEGGGHNVVSDGDGDLDE----SERVSEEGTTY 86 (115)
T ss_pred ceEEEEecccCCCCceeEeCC-----------EEEECCCCEEEEEECCCCCCEEEEECCCCCccc----cccccCCCCEE
Confidence 45567788 22 23555442 3689999999999852 8987433233441 11111223356
Q ss_pred EEEecCcccEEEEeCCCCCCCCCCeEEEEEe
Q 038631 106 AFRLDHPGPFYFISGASGHCEKGQRMIIKVM 136 (185)
Q Consensus 106 ~v~L~~~G~~YFiCgv~~HC~~GmKl~I~V~ 136 (185)
.++++++|.|-|+|. -|=..|||-.|.|.
T Consensus 87 s~Tf~~~G~Y~Y~C~--pH~~~gM~G~I~V~ 115 (115)
T TIGR03102 87 EHTFEEPGIYLYVCV--PHEALGMKGAVVVE 115 (115)
T ss_pred EEEecCCcEEEEEcc--CCCCCCCEEEEEEC
Confidence 899999999999998 47667999999984
No 7
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=97.65 E-value=0.00025 Score=54.87 Aligned_cols=72 Identities=15% Similarity=0.092 Sum_probs=50.7
Q ss_pred CCeeeeccEeeEEeeC--CcEEEEcccccCCCCCCCCceeeCCCCeEEEecCcccEEEEeCCCCCCCCCCeEEEEEecC
Q 038631 62 ENRFQVGDTIRFKYKK--DSVMEVTDKEYKKCNSTHPIFFSNTGNTAFRLDHPGPFYFISGASGHCEKGQRMIIKVMYH 138 (185)
Q Consensus 62 ~~tF~vGD~LvF~y~~--hsV~~V~~~~Y~~C~~s~pi~~~~~G~~~v~L~~~G~~YFiCgv~~HC~~GmKl~I~V~~~ 138 (185)
..++++||++.|.... |+|..+.....+. .++.....+....++++++|.|-|.|. .|=..||+-.|.|..+
T Consensus 16 ~v~V~~GdTV~f~n~d~~Hnv~~~~~~~p~g---~~~~~s~~g~~~~~tF~~~G~Y~Y~C~--pH~~~GM~G~V~Vg~~ 89 (116)
T TIGR02375 16 YIRAAPGDTVTFVPTDKGHNVETIKGMIPEG---AEAFKSKINEEYTVTVTEEGVYGVKCT--PHYGMGMVALIQVGDP 89 (116)
T ss_pred EEEECCCCEEEEEECCCCeeEEEccCCCcCC---cccccCCCCCEEEEEeCCCEEEEEEcC--CCccCCCEEEEEECCC
Confidence 4689999999999964 8887542211111 111111123345889999999999998 7999999999999764
No 8
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=97.56 E-value=0.00061 Score=53.85 Aligned_cols=67 Identities=18% Similarity=0.196 Sum_probs=49.4
Q ss_pred CCeeeeccEeeEEeeC---CcEEEEcccccCCCCCCCCceeeC-C--CCeEEEecCcccEEEEeCCCCCCCCCCeEEEEE
Q 038631 62 ENRFQVGDTIRFKYKK---DSVMEVTDKEYKKCNSTHPIFFSN-T--GNTAFRLDHPGPFYFISGASGHCEKGQRMIIKV 135 (185)
Q Consensus 62 ~~tF~vGD~LvF~y~~---hsV~~V~~~~Y~~C~~s~pi~~~~-~--G~~~v~L~~~G~~YFiCgv~~HC~~GmKl~I~V 135 (185)
..+..+||++.|.+.. |||.-....+. . ...... + -..+.+++++|.|.|+|.- |=..|||-.|.|
T Consensus 55 ~v~v~pGDTVtw~~~d~~~Hnv~~~~~~~~-----~-g~~~~~~~~~~s~~~Tfe~~G~Y~Y~C~P--H~~~gM~G~IvV 126 (128)
T COG3794 55 EVTVKPGDTVTWVNTDSVGHNVTAVGGMDP-----E-GSGTLKAGINESFTHTFETPGEYTYYCTP--HPGMGMKGKIVV 126 (128)
T ss_pred EEEECCCCEEEEEECCCCCceEEEeCCCCc-----c-cccccccCCCcceEEEecccceEEEEecc--CCCCCcEEEEEe
Confidence 4689999999999974 99987644411 0 111111 2 2357889999999999985 888999999998
Q ss_pred e
Q 038631 136 M 136 (185)
Q Consensus 136 ~ 136 (185)
.
T Consensus 127 ~ 127 (128)
T COG3794 127 G 127 (128)
T ss_pred C
Confidence 5
No 9
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=96.64 E-value=0.011 Score=42.37 Aligned_cols=68 Identities=15% Similarity=0.208 Sum_probs=44.7
Q ss_pred CeeeeccEeeEEeeC---CcEEEEcccccCCCCCCCCceeeCCCCeEEEecCcccEEEEeCCCCCCCCCCeEEEEEe
Q 038631 63 NRFQVGDTIRFKYKK---DSVMEVTDKEYKKCNSTHPIFFSNTGNTAFRLDHPGPFYFISGASGHCEKGQRMIIKVM 136 (185)
Q Consensus 63 ~tF~vGD~LvF~y~~---hsV~~V~~~~Y~~C~~s~pi~~~~~G~~~v~L~~~G~~YFiCgv~~HC~~GmKl~I~V~ 136 (185)
.+.++||++.|+... |+|.-.+.. ...=+...+. ...+...+++++++|.+-|.|.... +||-.|.|.
T Consensus 13 i~v~~GdtVt~~N~d~~~Hnv~~~~g~-~~~~~~~~~~-~~~g~~~~~tf~~~G~y~y~C~~Hp----~M~G~v~V~ 83 (83)
T TIGR02657 13 LHVKVGDTVTWINREAMPHNVHFVAGV-LGEAALKGPM-MKKEQAYSLTFTEAGTYDYHCTPHP----FMRGKVVVE 83 (83)
T ss_pred EEECCCCEEEEEECCCCCccEEecCCC-Cccccccccc-cCCCCEEEEECCCCEEEEEEcCCCC----CCeEEEEEC
Confidence 578999999998863 898754321 1110011111 1122345889999999999999743 599999874
No 10
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=96.57 E-value=0.0074 Score=48.36 Aligned_cols=33 Identities=21% Similarity=0.504 Sum_probs=29.0
Q ss_pred CeEEEecCcccEEEEeCCCCCCCCCCeEEEEEe
Q 038631 104 NTAFRLDHPGPFYFISGASGHCEKGQRMIIKVM 136 (185)
Q Consensus 104 ~~~v~L~~~G~~YFiCgv~~HC~~GmKl~I~V~ 136 (185)
..+++.+++|.|||.|.+++|=+.||+-.|.|.
T Consensus 116 ~~tf~f~~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 116 DFTYHFSTAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred EEEEECCCCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 447778899999999999999999999998873
No 11
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=96.37 E-value=0.016 Score=48.88 Aligned_cols=76 Identities=18% Similarity=0.347 Sum_probs=48.4
Q ss_pred eeeccEeeEEeeC-----CcEEEE-cccccCCCCC---CCCceee-------------CCCCeE-EEe-c-CcccEEEEe
Q 038631 65 FQVGDTIRFKYKK-----DSVMEV-TDKEYKKCNS---THPIFFS-------------NTGNTA-FRL-D-HPGPFYFIS 119 (185)
Q Consensus 65 F~vGD~LvF~y~~-----hsV~~V-~~~~Y~~C~~---s~pi~~~-------------~~G~~~-v~L-~-~~G~~YFiC 119 (185)
.-.|-++.|+|.+ |+.+.| +...+..+-. .+.+..+ ..|... ..+ + .+|.||+.|
T Consensus 90 VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~~~~~~l~aG~YwlvC 169 (196)
T PF06525_consen 90 VPAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSASGVYNDLPAGYYWLVC 169 (196)
T ss_pred EcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceeeEEEccCCCceEEEEc
Confidence 4468888888863 887766 3333344421 1222110 123322 122 2 589999999
Q ss_pred CCCCCCCCCCeEEEEEecCCC
Q 038631 120 GASGHCEKGQRMIIKVMYHEE 140 (185)
Q Consensus 120 gv~~HC~~GmKl~I~V~~~~~ 140 (185)
+++||=+.||-..+.|.+.-.
T Consensus 170 ~ipGHA~sGMw~~LiVs~~vt 190 (196)
T PF06525_consen 170 GIPGHAESGMWGVLIVSSNVT 190 (196)
T ss_pred cCCChhhcCCEEEEEEecCcc
Confidence 999999999999999987654
No 12
>KOG3858 consensus Ephrin, ligand for Eph receptor tyrosine kinase [Signal transduction mechanisms]
Probab=95.64 E-value=0.2 Score=43.37 Aligned_cols=76 Identities=24% Similarity=0.474 Sum_probs=45.6
Q ss_pred eeeeccEeeEEeeC---C--------cEEEEcccccCCCCC-CCCceeeC----CCCe----EEEe---------cCcc-
Q 038631 64 RFQVGDTIRFKYKK---D--------SVMEVTDKEYKKCNS-THPIFFSN----TGNT----AFRL---------DHPG- 113 (185)
Q Consensus 64 tF~vGD~LvF~y~~---h--------sV~~V~~~~Y~~C~~-s~pi~~~~----~G~~----~v~L---------~~~G- 113 (185)
-.++||.|-+--+. + -++.|++++|+.|+. +.+-..+. +.+. +|+. =+||
T Consensus 46 ~v~igD~ldIiCP~~e~~~~~~~E~yilYmV~~~~y~~C~~~s~~~~~~~C~rP~~~~kfsikFq~ftP~p~G~EF~pG~ 125 (233)
T KOG3858|consen 46 YVQIGDYLDIICPHYEEGGPEGYEYYILYMVSEEEYDLCELRSKPFKRWECNRPSTPLKFSIKFQRFTPFPLGFEFQPGH 125 (233)
T ss_pred EeccCCEEEEECCCCCCCCCCcceEEEEEEeChHHhhhhhccCCCcEEEEecCCCcchhhhhhheecCCCCCCccccCCC
Confidence 45678888876652 1 267899999999996 44432221 1111 1111 0466
Q ss_pred cEEEEeCC-----------CCCCCC-CCeEEEEEecCC
Q 038631 114 PFYFISGA-----------SGHCEK-GQRMIIKVMYHE 139 (185)
Q Consensus 114 ~~YFiCgv-----------~~HC~~-GmKl~I~V~~~~ 139 (185)
.||||++- ++-|.. .||+.+.|...+
T Consensus 126 ~YY~IStStg~~~g~~~~~ggvc~~~~mk~~~~V~~~~ 163 (233)
T KOG3858|consen 126 TYYYISTSTGDAEGLCNLRGGVCVTRNMKLLMKVGQSP 163 (233)
T ss_pred eEEEEeCCCccccccchhhCCEeccCCceEEEEecccC
Confidence 57777653 355654 599999987543
No 13
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=94.56 E-value=0.036 Score=40.94 Aligned_cols=65 Identities=9% Similarity=0.172 Sum_probs=28.7
Q ss_pred CCeeeeccEeeEEeeC--CcEEEEcccccCCCCCCCCceeeCCCCeEEEe--cCcccEEEEeCCCCCCCCCCeEEEEE
Q 038631 62 ENRFQVGDTIRFKYKK--DSVMEVTDKEYKKCNSTHPIFFSNTGNTAFRL--DHPGPFYFISGASGHCEKGQRMIIKV 135 (185)
Q Consensus 62 ~~tF~vGD~LvF~y~~--hsV~~V~~~~Y~~C~~s~pi~~~~~G~~~v~L--~~~G~~YFiCgv~~HC~~GmKl~I~V 135 (185)
..+++.|+.+.+.+.+ ....++.-.+. .-......+...++++ .++|.|=|+|++..+ ||-.|.|
T Consensus 36 ~i~v~~G~~v~l~~~N~~~~~h~~~i~~~-----~~~~~l~~g~~~~~~f~~~~~G~y~~~C~~~~~----m~G~liV 104 (104)
T PF13473_consen 36 TITVKAGQPVTLTFTNNDSRPHEFVIPDL-----GISKVLPPGETATVTFTPLKPGEYEFYCTMHPN----MKGTLIV 104 (104)
T ss_dssp EEEEETTCEEEEEEEE-SSS-EEEEEGGG-----TEEEEE-TT-EEEEEEEE-S-EEEEEB-SSS-T----TB-----
T ss_pred EEEEcCCCeEEEEEEECCCCcEEEEECCC-----ceEEEECCCCEEEEEEcCCCCEEEEEEcCCCCc----ceecccC
Confidence 4689999955555553 22222211111 0001122233345555 899999999997663 6655544
No 14
>PF00812 Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a family of proteins [] that are ligands of class V (EPH-related) receptor protein-tyrosine kinases (see IPR001426 from INTERPRO). These receptors and their ligands have been implicated in regulating neuronal axon guidance and in patterning of the developing nervous system and may also serve a patterning and compartmentalisation role outside of the nervous system as well. Ephrins are membrane-attached proteins of 205 to 340 residues. Attachment appears to be crucial for their normal function. Type-A ephrins are linked to the membrane via a glycosylphosphatidylinositol (GPI)-linkage, while type-B ephrins are type-I membrane proteins.; GO: 0016020 membrane; PDB: 3HEI_P 3CZU_B 3MBW_B 1KGY_E 1IKO_P 2WO3_B 2I85_A 2VSK_B 3GXU_B 2VSM_B ....
Probab=94.14 E-value=0.088 Score=42.39 Aligned_cols=73 Identities=26% Similarity=0.578 Sum_probs=44.9
Q ss_pred eeeeccEeeEEeeC---C----------cEEEEcccccCCCCCC-CCceee-------CCCCeEEEec------------
Q 038631 64 RFQVGDTIRFKYKK---D----------SVMEVTDKEYKKCNST-HPIFFS-------NTGNTAFRLD------------ 110 (185)
Q Consensus 64 tF~vGD~LvF~y~~---h----------sV~~V~~~~Y~~C~~s-~pi~~~-------~~G~~~v~L~------------ 110 (185)
..++||.|-+--+. + .+..|++++|+.|+.. .+...+ ..|+.+|++.
T Consensus 25 ~V~i~D~ldIiCP~~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~l~~C~~P~~~~~~~kft~kFq~fSP~p~G~E 104 (145)
T PF00812_consen 25 EVRIGDYLDIICPHYEPGGPPPEEYEYYILYMVSEEGYESCSLTSRPRLLWECDRPEAPHGPKKFTIKFQEFSPFPLGLE 104 (145)
T ss_dssp EE-TTEEEEEEE--SSSSSSSCSSS-BEEEEEE-HHHHHHTBSSTSEEEEEEE-TTTSTTSSEEEEEESSSS-SSTTSSS
T ss_pred EecCCCEEEEECCCCCCCCCCCCCceEEEEEEEcHHHhcccCCCCCCcEEEEeCCCCCCCCCcEEEEEEEECCCCCCCee
Confidence 67889999998763 1 3788999999999963 333322 1234455431
Q ss_pred -Ccc-cEEEEeCC-----------CCCCCC-CCeEEEEEe
Q 038631 111 -HPG-PFYFISGA-----------SGHCEK-GQRMIIKVM 136 (185)
Q Consensus 111 -~~G-~~YFiCgv-----------~~HC~~-GmKl~I~V~ 136 (185)
++| .||||+.- +|-|.. .|||.+.|.
T Consensus 105 F~pG~~YY~ISts~g~~~g~~~~~gG~C~~~~mkl~~~v~ 144 (145)
T PF00812_consen 105 FQPGHDYYYISTSTGTQEGLDNRRGGLCLSHNMKLRIKVG 144 (145)
T ss_dssp --TTEEEEEEEEESSSSTTTTSSBSCHHHEEEEEEEEECT
T ss_pred ecCCCeEEEEEccCCCCCCcccccccccCcCeeEEEEecC
Confidence 466 58888753 233753 689888874
No 15
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=94.13 E-value=0.075 Score=44.66 Aligned_cols=31 Identities=23% Similarity=0.552 Sum_probs=27.2
Q ss_pred cCcccEEEEeCCCCCCCCCCeEEEEEecCCC
Q 038631 110 DHPGPFYFISGASGHCEKGQRMIIKVMYHEE 140 (185)
Q Consensus 110 ~~~G~~YFiCgv~~HC~~GmKl~I~V~~~~~ 140 (185)
.++|.||++|+++||-+.||=..+.|.+.-.
T Consensus 159 ~~~G~YwlvCgipGHAesGMw~~lIVSs~vt 189 (195)
T TIGR03094 159 TSAGKYWLVCGITGHAESGMWAVVIVSSNVT 189 (195)
T ss_pred CCCeeEEEEcccCChhhcCcEEEEEEecCcc
Confidence 4789999999999999999998888876543
No 16
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=93.38 E-value=0.13 Score=42.04 Aligned_cols=36 Identities=25% Similarity=0.382 Sum_probs=32.0
Q ss_pred CCCCeEEEecCcccEEEEeCCCCCCCCCCeEEEEEe
Q 038631 101 NTGNTAFRLDHPGPFYFISGASGHCEKGQRMIIKVM 136 (185)
Q Consensus 101 ~~G~~~v~L~~~G~~YFiCgv~~HC~~GmKl~I~V~ 136 (185)
.+|.-++.++++|.|=|+|.+++|=+.||.-.|+|.
T Consensus 122 ~s~elvv~ft~~g~ye~~C~iPGHy~AGM~g~itV~ 157 (158)
T COG4454 122 KSGELVVVFTGAGKYEFACNIPGHYEAGMVGEITVS 157 (158)
T ss_pred CcEEEEEEecCCccEEEEecCCCcccCCcEEEEEeC
Confidence 345558889999999999999999999999999996
No 17
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=90.68 E-value=0.46 Score=37.93 Aligned_cols=53 Identities=15% Similarity=0.281 Sum_probs=32.6
Q ss_pred CCeeeeccEeeEEeeC-----CcEEEEcccccCCCCCCCCceeeCCCC---eEEEecCcccEEEEeCCCCCC
Q 038631 62 ENRFQVGDTIRFKYKK-----DSVMEVTDKEYKKCNSTHPIFFSNTGN---TAFRLDHPGPFYFISGASGHC 125 (185)
Q Consensus 62 ~~tF~vGD~LvF~y~~-----hsV~~V~~~~Y~~C~~s~pi~~~~~G~---~~v~L~~~G~~YFiCgv~~HC 125 (185)
..+++.||.+.+++.+ |.+.- .+|. .+ ....-|. .+++.+++|.|.|+|+. ||
T Consensus 62 ~I~VkaGD~Vtl~vtN~d~~~H~f~i---~~~g---is---~~I~pGet~TitF~adKpG~Y~y~C~~--HP 122 (135)
T TIGR03096 62 ALVVKKGTPVKVTVENKSPISEGFSI---DAYG---IS---EVIKAGETKTISFKADKAGAFTIWCQL--HP 122 (135)
T ss_pred EEEECCCCEEEEEEEeCCCCccceEE---CCCC---cc---eEECCCCeEEEEEECCCCEEEEEeCCC--CC
Confidence 4578999999888764 33221 2221 11 1112232 25677999999999987 55
No 18
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=82.20 E-value=1.3 Score=33.85 Aligned_cols=76 Identities=20% Similarity=0.192 Sum_probs=46.0
Q ss_pred CeeeeccEeeEEeeC-----CcEEE----Eccc-ccCC--CCCCCCceeeCCCCeEEEecC-cccEEEEeCCCCCCCCCC
Q 038631 63 NRFQVGDTIRFKYKK-----DSVME----VTDK-EYKK--CNSTHPIFFSNTGNTAFRLDH-PGPFYFISGASGHCEKGQ 129 (185)
Q Consensus 63 ~tF~vGD~LvF~y~~-----hsV~~----V~~~-~Y~~--C~~s~pi~~~~~G~~~v~L~~-~G~~YFiCgv~~HC~~Gm 129 (185)
.+++.||+|..++.+ +++.- +... ..|. .....++....+-...|+++. +|.+||-|...+|=..||
T Consensus 28 I~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~~GL 107 (117)
T PF07732_consen 28 IRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESFTYEFTANQQAGTYWYHSHVHGQQVMGL 107 (117)
T ss_dssp EEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEEEEEEEESSCSEEEEEEECSTTHHHTTE
T ss_pred EEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCcccccceeEEeecceeeeEeeeccccceeEeeCCCchhcCcC
Confidence 578999999999974 23322 1111 0111 111112222122234788888 999999999987544899
Q ss_pred eEEEEEecC
Q 038631 130 RMIIKVMYH 138 (185)
Q Consensus 130 Kl~I~V~~~ 138 (185)
--.+.|.+.
T Consensus 108 ~G~~iV~~~ 116 (117)
T PF07732_consen 108 YGAIIVEPP 116 (117)
T ss_dssp EEEEEEE-T
T ss_pred EEEEEEcCC
Confidence 999988754
No 19
>PLN02604 oxidoreductase
Probab=80.99 E-value=9.7 Score=36.58 Aligned_cols=35 Identities=23% Similarity=0.335 Sum_probs=30.6
Q ss_pred eEEEecCcccEEEEeCCCCCCCCCCeEEEEEecCC
Q 038631 105 TAFRLDHPGPFYFISGASGHCEKGQRMIIKVMYHE 139 (185)
Q Consensus 105 ~~v~L~~~G~~YFiCgv~~HC~~GmKl~I~V~~~~ 139 (185)
..|+++.+|++||=|-...|-..||.-.|.|....
T Consensus 112 y~f~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~ 146 (566)
T PLN02604 112 YEFVVDRPGTYLYHAHYGMQREAGLYGSIRVSLPR 146 (566)
T ss_pred EEEEcCCCEEEEEeeCcHHHHhCCCeEEEEEEecC
Confidence 36778899999999999999999999999998543
No 20
>PLN02835 oxidoreductase
Probab=80.97 E-value=23 Score=34.03 Aligned_cols=76 Identities=16% Similarity=0.148 Sum_probs=47.7
Q ss_pred CeeeeccEeeEEeeC----------CcEEEEcccccCC-CCCCCCceeeCCCCeEEEe-cCcccEEEEeCCCCCCCCCCe
Q 038631 63 NRFQVGDTIRFKYKK----------DSVMEVTDKEYKK-CNSTHPIFFSNTGNTAFRL-DHPGPFYFISGASGHCEKGQR 130 (185)
Q Consensus 63 ~tF~vGD~LvF~y~~----------hsV~~V~~~~Y~~-C~~s~pi~~~~~G~~~v~L-~~~G~~YFiCgv~~HC~~GmK 130 (185)
.+++.||+|+.+..+ |-+.|-.....|. ....-||....+=...|++ +.+|++||=|-...+-..|+.
T Consensus 62 I~~~~GD~v~v~v~N~L~~~ttiHWHGl~~~~~~~~DGv~~tQ~pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~~Gl~ 141 (539)
T PLN02835 62 LDVVTNDNIILNLINKLDQPFLLTWNGIKQRKNSWQDGVLGTNCPIPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAGGF 141 (539)
T ss_pred EEEECCCEEEEEEEeCCCCCCcEEeCCcccCCCCCCCCCccCcCCCCCCCcEEEEEEECCCCEeEEEEeCccchhcCccc
Confidence 478999999988863 3444432222222 0011133222222346776 579999999988888888999
Q ss_pred EEEEEecC
Q 038631 131 MIIKVMYH 138 (185)
Q Consensus 131 l~I~V~~~ 138 (185)
-.+.|...
T Consensus 142 G~lIV~~~ 149 (539)
T PLN02835 142 GAINVYER 149 (539)
T ss_pred ceeEEeCC
Confidence 99999643
No 21
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=80.00 E-value=5.9 Score=32.82 Aligned_cols=68 Identities=18% Similarity=0.251 Sum_probs=42.3
Q ss_pred CeeeeccEeeEEeeCCcEEEEcccccCCCCCCCCceee-CCCC---eEEEecCcccEEEEeCC---CCCCCCCCeEEEEE
Q 038631 63 NRFQVGDTIRFKYKKDSVMEVTDKEYKKCNSTHPIFFS-NTGN---TAFRLDHPGPFYFISGA---SGHCEKGQRMIIKV 135 (185)
Q Consensus 63 ~tF~vGD~LvF~y~~hsV~~V~~~~Y~~C~~s~pi~~~-~~G~---~~v~L~~~G~~YFiCgv---~~HC~~GmKl~I~V 135 (185)
-.+.+|+.+.|+-.+.+|.. +|-- +.-.+... --|. ..++.+++|.|++.|+. .+| ..|++.|.|
T Consensus 119 l~vp~g~~v~~~~ts~DV~H----sf~i--p~~~~k~da~PG~~~~~~~~~~~~G~y~~~c~e~cG~~h--~~M~~~v~v 190 (201)
T TIGR02866 119 LVVPAGTPVRLQVTSKDVIH----SFWV--PELGGKIDAIPGQYNALWFNADEPGVYYGYCAELCGAGH--SLMLFKVVV 190 (201)
T ss_pred EEEEcCCEEEEEEEeCchhh----cccc--cccCceEEecCCcEEEEEEEeCCCEEEEEEehhhCCcCc--cCCeEEEEE
Confidence 36788999999887755542 1110 01111111 1122 35678899999999987 345 569999999
Q ss_pred ecC
Q 038631 136 MYH 138 (185)
Q Consensus 136 ~~~ 138 (185)
.++
T Consensus 191 ~~~ 193 (201)
T TIGR02866 191 VER 193 (201)
T ss_pred ECH
Confidence 753
No 22
>PRK02888 nitrous-oxide reductase; Validated
Probab=78.73 E-value=3.9 Score=40.17 Aligned_cols=70 Identities=17% Similarity=0.220 Sum_probs=40.3
Q ss_pred CeeeeccEeeEEeeC-CcEEEEcccccCCCCCCCCce-eeCCC---CeEEEecCcccEEEEeCC---CCCCCCCCeEEEE
Q 038631 63 NRFQVGDTIRFKYKK-DSVMEVTDKEYKKCNSTHPIF-FSNTG---NTAFRLDHPGPFYFISGA---SGHCEKGQRMIIK 134 (185)
Q Consensus 63 ~tF~vGD~LvF~y~~-hsV~~V~~~~Y~~C~~s~pi~-~~~~G---~~~v~L~~~G~~YFiCgv---~~HC~~GmKl~I~ 134 (185)
.++++||.+.|...+ +.+--|.. .|.- ....+. .-.-| ..+|+.++||.||++|+. ..| .+|+-.|.
T Consensus 557 i~Vk~GDeVt~~lTN~d~~~DViH-GF~I--p~~nI~~dv~PG~t~svtF~adkPGvy~~~CtefCGa~H--~~M~G~~i 631 (635)
T PRK02888 557 FTVKQGDEVTVIVTNLDKVEDLTH-GFAI--PNYGVNMEVAPQATASVTFTADKPGVYWYYCTWFCHALH--MEMRGRML 631 (635)
T ss_pred EEecCCCEEEEEEEeCCccccccc-ceee--cccCccEEEcCCceEEEEEEcCCCEEEEEECCcccccCc--ccceEEEE
Confidence 568888888888876 22111110 1110 000111 11122 336677999999999997 344 47999998
Q ss_pred Eec
Q 038631 135 VMY 137 (185)
Q Consensus 135 V~~ 137 (185)
|.+
T Consensus 632 Vep 634 (635)
T PRK02888 632 VEP 634 (635)
T ss_pred EEe
Confidence 864
No 23
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=78.62 E-value=10 Score=33.69 Aligned_cols=74 Identities=20% Similarity=0.248 Sum_probs=45.2
Q ss_pred CeeeeccEeeEEeeCC-------cEEEEcccccCCCCCCCCceeeCCCC---eEEEecCcccEEEEeCC----CCCCCCC
Q 038631 63 NRFQVGDTIRFKYKKD-------SVMEVTDKEYKKCNSTHPIFFSNTGN---TAFRLDHPGPFYFISGA----SGHCEKG 128 (185)
Q Consensus 63 ~tF~vGD~LvF~y~~h-------sV~~V~~~~Y~~C~~s~pi~~~~~G~---~~v~L~~~G~~YFiCgv----~~HC~~G 128 (185)
.+++.||+++.++.++ ++..=-.... +.......-..|. ..|+++.+|++||-|.. ..|=..|
T Consensus 61 irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~~~---dg~~~~~~I~PG~t~ty~F~~~~~Gty~YH~H~~~~~~~q~~~G 137 (311)
T TIGR02376 61 IRVHEGDYVELTLINPPTNTMPHNVDFHAATGA---LGGAALTQVNPGETATLRFKATRPGAFVYHCAPPGMVPWHVVSG 137 (311)
T ss_pred EEEECCCEEEEEEEeCCCCCCceeeeecCCCcc---CCCCcceeECCCCeEEEEEEcCCCEEEEEEcCCCCchhHHhhcC
Confidence 4789999999888653 2211000000 0001111122232 36778899999999995 4587889
Q ss_pred CeEEEEEecCC
Q 038631 129 QRMIIKVMYHE 139 (185)
Q Consensus 129 mKl~I~V~~~~ 139 (185)
|.-.+.|.+..
T Consensus 138 l~G~liV~~~~ 148 (311)
T TIGR02376 138 MNGAIMVLPRE 148 (311)
T ss_pred cceEEEeeccC
Confidence 99999998653
No 24
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=74.40 E-value=15 Score=33.88 Aligned_cols=30 Identities=17% Similarity=0.221 Sum_probs=21.6
Q ss_pred CCeEEEecCcccEEEEeCCCCCCCCCCeEEEEEec
Q 038631 103 GNTAFRLDHPGPFYFISGASGHCEKGQRMIIKVMY 137 (185)
Q Consensus 103 G~~~v~L~~~G~~YFiCgv~~HC~~GmKl~I~V~~ 137 (185)
+.-+++| +||.|-|+|+. | ..||-.|+|..
T Consensus 88 ~~l~~~L-~pGtY~~~C~~--~--~~~~g~l~Vtg 117 (375)
T PRK10378 88 QKMTANL-QPGEYDMTCGL--L--TNPKGKLIVKG 117 (375)
T ss_pred eEEEEec-CCceEEeecCc--C--CCCCceEEEeC
Confidence 3445666 69999999976 4 33577788864
No 25
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=74.12 E-value=6.2 Score=30.29 Aligned_cols=63 Identities=22% Similarity=0.441 Sum_probs=37.6
Q ss_pred CeeeeccEeeEEeeCCcEEE---EcccccCCCCCCCCceee-CCCC---eEEEecCcccEEEEeCCCCCCCCC---CeEE
Q 038631 63 NRFQVGDTIRFKYKKDSVME---VTDKEYKKCNSTHPIFFS-NTGN---TAFRLDHPGPFYFISGASGHCEKG---QRMI 132 (185)
Q Consensus 63 ~tF~vGD~LvF~y~~hsV~~---V~~~~Y~~C~~s~pi~~~-~~G~---~~v~L~~~G~~YFiCgv~~HC~~G---mKl~ 132 (185)
-....|+.+.|+-.+.+|.- +.+- .+... --|. ..++.++||.|++.|+. .|-.| |+..
T Consensus 48 l~lp~g~~v~~~ltS~DViHsf~ip~~---------~~k~d~~PG~~~~~~~~~~~~G~y~~~C~e--~CG~gH~~M~~~ 116 (120)
T PF00116_consen 48 LVLPAGQPVRFHLTSEDVIHSFWIPEL---------GIKMDAIPGRTNSVTFTPDKPGTYYGQCAE--YCGAGHSFMPGK 116 (120)
T ss_dssp EEEETTSEEEEEEEESSS-EEEEETTC---------TEEEEEBTTCEEEEEEEESSSEEEEEEE-S--SSSTTGGG-EEE
T ss_pred ecccccceEeEEEEcCCcccccccccc---------CcccccccccceeeeeeeccCCcEEEcCcc--ccCcCcCCCeEE
Confidence 46678888888887643322 1111 11111 1232 36677899999999986 67665 8888
Q ss_pred EEEe
Q 038631 133 IKVM 136 (185)
Q Consensus 133 I~V~ 136 (185)
|.|.
T Consensus 117 v~VV 120 (120)
T PF00116_consen 117 VIVV 120 (120)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 8773
No 26
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=73.71 E-value=1.7 Score=32.55 Aligned_cols=28 Identities=21% Similarity=0.091 Sum_probs=14.4
Q ss_pred hhhHHHHHHHHHHHHHHhcccceeeEEE
Q 038631 10 KNSVNLTLLLLAIIISSIHHLPVHSLEF 37 (185)
Q Consensus 10 ~~~~~~~~~l~~l~~~~l~~~~a~A~~~ 37 (185)
|+|-.++||.++|+++.|+++.++|++-
T Consensus 1 MaSK~~llL~l~LA~lLlisSevaa~~~ 28 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEVAAREL 28 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhhhhHHh
Confidence 4444555555555555555555555443
No 27
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=73.43 E-value=17 Score=35.39 Aligned_cols=73 Identities=14% Similarity=0.185 Sum_probs=49.0
Q ss_pred CeeeeccEeeEEeeC----------CcEEEEcccc-----cCCCCCCCCceeeCCCCeEEEe-cCcccEEEEeCCCCCCC
Q 038631 63 NRFQVGDTIRFKYKK----------DSVMEVTDKE-----YKKCNSTHPIFFSNTGNTAFRL-DHPGPFYFISGASGHCE 126 (185)
Q Consensus 63 ~tF~vGD~LvF~y~~----------hsV~~V~~~~-----Y~~C~~s~pi~~~~~G~~~v~L-~~~G~~YFiCgv~~HC~ 126 (185)
.+++.||+++.+..+ |-+.|-.... +..| ||....+=..+|++ +.+|++|+=+....+-.
T Consensus 62 I~~~~GD~v~V~V~N~L~~~ttIHWHGl~q~~t~w~DGv~~TQc----PI~PG~sftY~F~~~dq~GT~WYHsH~~~Q~~ 137 (596)
T PLN00044 62 LNVTTNWNLVVNVRNALDEPLLLTWHGVQQRKSAWQDGVGGTNC----AIPAGWNWTYQFQVKDQVGSFFYAPSTALHRA 137 (596)
T ss_pred EEEECCCEEEEEEEeCCCCCccEEECCccCCCCccccCCCCCcC----CcCCCCcEEEEEEeCCCCceeEeeccchhhhh
Confidence 378999999998753 3454432111 2234 33222222347788 47999999998888888
Q ss_pred CCCeEEEEEecCC
Q 038631 127 KGQRMIIKVMYHE 139 (185)
Q Consensus 127 ~GmKl~I~V~~~~ 139 (185)
.|+.-.|.|....
T Consensus 138 ~Gl~GalII~~~~ 150 (596)
T PLN00044 138 AGGYGAITINNRD 150 (596)
T ss_pred CcCeeEEEEcCcc
Confidence 8999999997643
No 28
>PF02839 CBM_5_12: Carbohydrate binding domain; InterPro: IPR003610 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM5 from CAZY and CBM12 from CAZY. These modules have a core structure consisting of a 3-stranded meander beta-sheet, which contain six aromatic groups that may be important for binding. CBM5/12 is found in proteins such as chitinase A1, chitinase B [], and endoglucanase Z []. The overall topology of the CBM is structurally similar to the C-terminal chitin-binding domains (ChBD) of chitinase A1 and chitinase B, however the binding mechanism for the ChBD may be different from that of the CBM [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0005576 extracellular region; PDB: 1ED7_A 1W1V_A 1E15_B 1UR8_A 1E6Z_B 1E6P_A 1W1T_A 1W1P_B 1UR9_A 1E6R_A ....
Probab=69.97 E-value=2.3 Score=26.27 Aligned_cols=19 Identities=21% Similarity=0.810 Sum_probs=11.2
Q ss_pred hhhhccCCeeeeccEeeEE
Q 038631 56 YNDWASENRFQVGDTIRFK 74 (185)
Q Consensus 56 Y~~Wa~~~tF~vGD~LvF~ 74 (185)
|.+|..+++...||.+.|+
T Consensus 1 ~p~W~~~~~Y~~Gd~V~~~ 19 (41)
T PF02839_consen 1 YPAWDPGTTYNAGDRVSYN 19 (41)
T ss_dssp --B--TTCEE-TT-EEEET
T ss_pred CCCcCCCCEEcCCCEEEEC
Confidence 5689999999999999854
No 29
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=69.56 E-value=5.4 Score=31.56 Aligned_cols=30 Identities=27% Similarity=0.456 Sum_probs=22.5
Q ss_pred CeEEEec----Cccc-EEEEeCCCCCCCCCCeEEEE
Q 038631 104 NTAFRLD----HPGP-FYFISGASGHCEKGQRMIIK 134 (185)
Q Consensus 104 ~~~v~L~----~~G~-~YFiCgv~~HC~~GmKl~I~ 134 (185)
.++|+++ ++|. |=|+|++|||=. .||-.++
T Consensus 90 s~svtF~~~~l~~g~~Y~f~CSFPGH~~-~MkG~l~ 124 (125)
T TIGR02695 90 KTSVTFDVSKLSAGEDYTFFCSFPGHWA-MMRGTVK 124 (125)
T ss_pred eEEEEEECCCCCCCCcceEEEcCCCcHH-hceEEEe
Confidence 4567665 3675 999999999986 6887654
No 30
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=67.78 E-value=13 Score=32.31 Aligned_cols=71 Identities=21% Similarity=0.242 Sum_probs=43.5
Q ss_pred CeeeeccEeeEEeeCCcEEEEcccccCCCCCCCCceeeC--CCCeEEEecCcccEEEEeCCCCCCC---CCCeEEEEEec
Q 038631 63 NRFQVGDTIRFKYKKDSVMEVTDKEYKKCNSTHPIFFSN--TGNTAFRLDHPGPFYFISGASGHCE---KGQRMIIKVMY 137 (185)
Q Consensus 63 ~tF~vGD~LvF~y~~hsV~~V~~~~Y~~C~~s~pi~~~~--~G~~~v~L~~~G~~YFiCgv~~HC~---~GmKl~I~V~~ 137 (185)
-.+.+|..+.|+-...||.- +|--=.....+.... .-.-.++.+++|.|+.+|.. .|. ..|++.|.|.+
T Consensus 139 l~lPv~~~V~f~ltS~DViH----sF~IP~l~~k~d~iPG~~~~~~~~~~~~G~Y~g~Cae--~CG~gH~~M~~~v~vvs 212 (247)
T COG1622 139 LVLPVGRPVRFKLTSADVIH----SFWIPQLGGKIDAIPGMTTELWLTANKPGTYRGICAE--YCGPGHSFMRFKVIVVS 212 (247)
T ss_pred EEEeCCCeEEEEEEechhce----eEEecCCCceeeecCCceEEEEEecCCCeEEEEEcHh--hcCCCcccceEEEEEEc
Confidence 47889999999988744432 111111111111111 11235677899999999986 554 45999999997
Q ss_pred CC
Q 038631 138 HE 139 (185)
Q Consensus 138 ~~ 139 (185)
..
T Consensus 213 ~~ 214 (247)
T COG1622 213 QE 214 (247)
T ss_pred HH
Confidence 64
No 31
>PF15183 MRAP: Melanocortin-2 receptor accessory protein family
Probab=63.29 E-value=7.1 Score=29.07 Aligned_cols=23 Identities=43% Similarity=0.453 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcc
Q 038631 160 VLALAVSKLAIVQFLLLLCTTAS 182 (185)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~ 182 (185)
++.+++|.+++|+||.|..+..|
T Consensus 39 VI~FWv~LA~FV~~lF~iL~~ms 61 (90)
T PF15183_consen 39 VIAFWVSLAAFVVFLFLILLYMS 61 (90)
T ss_pred ehhHHHHHHHHHHHHHHHHHHHh
Confidence 48999999999998887766543
No 32
>TIGR02228 sigpep_I_arch signal peptidase I, archaeal type. This model represents signal peptidase I from most archaea, a subunit of the eukaryotic endoplasmic reticulum signal peptidase I complex, and an apparent signal peptidase I from a small number of bacteria. It is related to but does not overlap in hits with TIGR02227, the bacterial and mitochondrial signal peptidase I.
Probab=63.22 E-value=20 Score=28.91 Aligned_cols=16 Identities=44% Similarity=0.623 Sum_probs=12.3
Q ss_pred CCeeeeccEeeEEeeC
Q 038631 62 ENRFQVGDTIRFKYKK 77 (185)
Q Consensus 62 ~~tF~vGD~LvF~y~~ 77 (185)
...++.||.++|+.+.
T Consensus 58 ~~~~~~GDIVvf~~~~ 73 (158)
T TIGR02228 58 PNDIQVGDVITYKSPG 73 (158)
T ss_pred cCCCCCCCEEEEEECC
Confidence 3578889999998753
No 33
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=61.81 E-value=12 Score=31.38 Aligned_cols=32 Identities=22% Similarity=0.258 Sum_probs=25.4
Q ss_pred EEEecCcccEEEEeCCCCCCCC---CCeEEEEEecCC
Q 038631 106 AFRLDHPGPFYFISGASGHCEK---GQRMIIKVMYHE 139 (185)
Q Consensus 106 ~v~L~~~G~~YFiCgv~~HC~~---GmKl~I~V~~~~ 139 (185)
.++.+++|.++..|+. .|.. .|++.|.|.++.
T Consensus 159 ~~~~~~~G~y~g~C~e--~CG~~H~~M~~~v~v~~~~ 193 (194)
T MTH00047 159 FFCPDRHGVFVGYCSE--LCGVGHSYMPIVIEVVDVD 193 (194)
T ss_pred EEEcCCCEEEEEEeeh--hhCcCcccCcEEEEEEcCC
Confidence 5567899999999985 5654 499999998764
No 34
>PLN02354 copper ion binding / oxidoreductase
Probab=61.49 E-value=1e+02 Score=29.71 Aligned_cols=73 Identities=14% Similarity=0.170 Sum_probs=48.3
Q ss_pred CeeeeccEeeEEeeC----------CcEEEEcccccC-----CCCCCCCceeeCCCCeEEEe-cCcccEEEEeCCCCCCC
Q 038631 63 NRFQVGDTIRFKYKK----------DSVMEVTDKEYK-----KCNSTHPIFFSNTGNTAFRL-DHPGPFYFISGASGHCE 126 (185)
Q Consensus 63 ~tF~vGD~LvF~y~~----------hsV~~V~~~~Y~-----~C~~s~pi~~~~~G~~~v~L-~~~G~~YFiCgv~~HC~ 126 (185)
.+++.||+|+.+..+ |-+.|-.....| .| ||....+=..+|++ +.+|++||=+-...+-.
T Consensus 60 I~~~~GD~v~V~v~N~l~~~ttiHWHGi~q~~~~~~DGv~~TQc----pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~~ 135 (552)
T PLN02354 60 INSTSNNNIVINVFNNLDEPFLLTWSGIQQRKNSWQDGVPGTNC----PIPPGTNFTYHFQPKDQIGSYFYYPSTGMHRA 135 (552)
T ss_pred EEEeCCCEEEEEEEECCCCCcccccccccCCCCcccCCCcCCcC----CCCCCCcEEEEEEeCCCCcceEEecCccceec
Confidence 478899999988763 345543222122 24 33222222346777 47899999998888888
Q ss_pred CCCeEEEEEecCC
Q 038631 127 KGQRMIIKVMYHE 139 (185)
Q Consensus 127 ~GmKl~I~V~~~~ 139 (185)
.|+.-.+.|....
T Consensus 136 ~Gl~G~lII~~~~ 148 (552)
T PLN02354 136 AGGFGGLRVNSRL 148 (552)
T ss_pred CCccceEEEcCCc
Confidence 9999999997543
No 35
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=60.71 E-value=2.8 Score=37.41 Aligned_cols=60 Identities=10% Similarity=0.283 Sum_probs=0.0
Q ss_pred ccEeeEEeeCCcEEEEcccccCCCCCCCC-----ceeeCCCCeEEEecC-cccEEEEeCC----CCCCCCCCeEEE
Q 038631 68 GDTIRFKYKKDSVMEVTDKEYKKCNSTHP-----IFFSNTGNTAFRLDH-PGPFYFISGA----SGHCEKGQRMII 133 (185)
Q Consensus 68 GD~LvF~y~~hsV~~V~~~~Y~~C~~s~p-----i~~~~~G~~~v~L~~-~G~~YFiCgv----~~HC~~GmKl~I 133 (185)
.++.+|.|.++++ .++.|....- ....++|.-+=.+.+ =|+.|-+.++ -|.|+.-....+
T Consensus 47 ~gstiVtwtNnTL------p~~~CP~eeI~~L~~~L~~~~g~~~~~f~~am~pef~V~svsv~~~G~C~~~~~ip~ 116 (290)
T PF05454_consen 47 SGSTIVTWTNNTL------PTSPCPKEEIEKLRKRLVDDDGKPSQEFVRAMGPEFKVKSVSVIPIGSCQDTSFIPT 116 (290)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CCCEEEEEEcCCC------CCCCCCHHHHHHHHHHHhcCCCCcCHHHHHHhCCCCceeEEEEEEeeccCCCccCCC
Confidence 5566777776665 4566875431 112334443222222 2677777776 489998544433
No 36
>PLN02991 oxidoreductase
Probab=60.27 E-value=1.4e+02 Score=28.79 Aligned_cols=76 Identities=16% Similarity=0.159 Sum_probs=46.5
Q ss_pred CeeeeccEeeEEeeC----------CcEEEEcccccCCCC-CCCCceeeCCCCeEEEe-cCcccEEEEeCCCCCCCCCCe
Q 038631 63 NRFQVGDTIRFKYKK----------DSVMEVTDKEYKKCN-STHPIFFSNTGNTAFRL-DHPGPFYFISGASGHCEKGQR 130 (185)
Q Consensus 63 ~tF~vGD~LvF~y~~----------hsV~~V~~~~Y~~C~-~s~pi~~~~~G~~~v~L-~~~G~~YFiCgv~~HC~~GmK 130 (185)
.+++.||+|+.+..+ |-+.|......|.=- ..-||....+=...|++ +.+|++||=+-...+-..|+.
T Consensus 61 I~~~~GD~v~V~V~N~L~~~ttiHWHGi~q~~~~~~DGv~~tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~ 140 (543)
T PLN02991 61 IISVTNDNLIINVFNHLDEPFLISWSGIRNWRNSYQDGVYGTTCPIPPGKNYTYALQVKDQIGSFYYFPSLGFHKAAGGF 140 (543)
T ss_pred EEEECCCEEEEEecCCCCCCccEEECCcccCCCccccCCCCCCCccCCCCcEEEEEEeCCCCcceEEecCcchhhhCCCe
Confidence 478999999988864 344443211122200 01133222222347777 479999999887766667888
Q ss_pred EEEEEecC
Q 038631 131 MIIKVMYH 138 (185)
Q Consensus 131 l~I~V~~~ 138 (185)
-.+.|...
T Consensus 141 G~lIV~~~ 148 (543)
T PLN02991 141 GAIRISSR 148 (543)
T ss_pred eeEEEeCC
Confidence 88888754
No 37
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=60.24 E-value=23 Score=33.72 Aligned_cols=35 Identities=17% Similarity=0.281 Sum_probs=30.9
Q ss_pred eEEEecCcccEEEEeCCCCCCCCCCeEEEEEecCC
Q 038631 105 TAFRLDHPGPFYFISGASGHCEKGQRMIIKVMYHE 139 (185)
Q Consensus 105 ~~v~L~~~G~~YFiCgv~~HC~~GmKl~I~V~~~~ 139 (185)
..|+++.+|++||-|-...|-..||.-.|.|....
T Consensus 89 y~f~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~ 123 (541)
T TIGR03388 89 YNFVVDRPGTYFYHGHYGMQRSAGLYGSLIVDVPD 123 (541)
T ss_pred EEEEcCCCEEEEEEecchHHhhccceEEEEEecCC
Confidence 47788999999999999999999999999998653
No 38
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=53.47 E-value=37 Score=33.05 Aligned_cols=84 Identities=18% Similarity=0.283 Sum_probs=52.1
Q ss_pred CCCCCCCCCcchhhhccCCeeeeccEeeEEeeC-----C------cEEEEcccc--cCCCCCCCCceeeCCCC--eEEEe
Q 038631 45 WVVPPANDSKIYNDWASENRFQVGDTIRFKYKK-----D------SVMEVTDKE--YKKCNSTHPIFFSNTGN--TAFRL 109 (185)
Q Consensus 45 W~~p~~~~~~~Y~~Wa~~~tF~vGD~LvF~y~~-----h------sV~~V~~~~--Y~~C~~s~pi~~~~~G~--~~v~L 109 (185)
|++. +..|.. ....+++.||.+.+.+.+ | -..+|...+ |.. ..+.+.....+. ..|..
T Consensus 488 wtiN----G~~~~~-~~pl~v~~Gervri~l~N~t~~~HpmHlHG~~f~v~~~~G~~~~--~~dTv~V~Pg~t~~~~f~a 560 (587)
T TIGR01480 488 WSFD----GEAFGL-KTPLRFNYGERLRVVLVNDTMMAHPIHLHGMWSELEDGQGEFQV--RKHTVDVPPGGKRSFRVTA 560 (587)
T ss_pred EEEC----CccCCC-CCceEecCCCEEEEEEECCCCCCcceeEcCceeeeecCCCcccc--cCCceeeCCCCEEEEEEEC
Confidence 8873 223332 235689999999999974 2 234442211 110 001122222333 35677
Q ss_pred cCcccEEEEeCCCCCCCCCCeEEEEE
Q 038631 110 DHPGPFYFISGASGHCEKGQRMIIKV 135 (185)
Q Consensus 110 ~~~G~~YFiCgv~~HC~~GmKl~I~V 135 (185)
+.||.++|=|-+..|=+.||--.+.|
T Consensus 561 d~pG~w~~HCH~l~H~~~GM~~~~~v 586 (587)
T TIGR01480 561 DALGRWAYHCHMLLHMEAGMFREVTV 586 (587)
T ss_pred CCCeEEEEcCCCHHHHhCcCcEEEEe
Confidence 89999999999999999999887776
No 39
>PLN02191 L-ascorbate oxidase
Probab=52.24 E-value=36 Score=32.87 Aligned_cols=77 Identities=16% Similarity=0.109 Sum_probs=47.3
Q ss_pred CeeeeccEeeEEeeC-----------CcEEEEcccccCC-CCCC-CCceeeCCCCeEEEecCcccEEEEeCCCCCCCCCC
Q 038631 63 NRFQVGDTIRFKYKK-----------DSVMEVTDKEYKK-CNST-HPIFFSNTGNTAFRLDHPGPFYFISGASGHCEKGQ 129 (185)
Q Consensus 63 ~tF~vGD~LvF~y~~-----------hsV~~V~~~~Y~~-C~~s-~pi~~~~~G~~~v~L~~~G~~YFiCgv~~HC~~Gm 129 (185)
.+++.||+|+.+..+ |-+.+-....+|. -..+ -|+....+-...|+++.+|++||=|-...+-..||
T Consensus 56 i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~gvtq~pI~PG~s~~Y~f~~~~~GT~wYHsH~~~q~~~Gl 135 (574)
T PLN02191 56 IDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAGVTQCAINPGETFTYKFTVEKPGTHFYHGHYGMQRSAGL 135 (574)
T ss_pred EEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCCccccCCcCCCCeEEEEEECCCCeEEEEeeCcHHHHhCCC
Confidence 478999999887764 2232211111121 0000 12222122234778889999999999988889999
Q ss_pred eEEEEEecCC
Q 038631 130 RMIIKVMYHE 139 (185)
Q Consensus 130 Kl~I~V~~~~ 139 (185)
.-.+.|....
T Consensus 136 ~G~liV~~~~ 145 (574)
T PLN02191 136 YGSLIVDVAK 145 (574)
T ss_pred EEEEEEccCC
Confidence 9999997543
No 40
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=47.32 E-value=36 Score=25.48 Aligned_cols=75 Identities=19% Similarity=0.320 Sum_probs=48.0
Q ss_pred CeeeeccEeeEEeeC----------C----cEEEEcccccC-------CCC---CCCCceeeCCCCe--EEEecCcccEE
Q 038631 63 NRFQVGDTIRFKYKK----------D----SVMEVTDKEYK-------KCN---STHPIFFSNTGNT--AFRLDHPGPFY 116 (185)
Q Consensus 63 ~tF~vGD~LvF~y~~----------h----sV~~V~~~~Y~-------~C~---~s~pi~~~~~G~~--~v~L~~~G~~Y 116 (185)
...+.||.+++...+ | .|+......+. .+. ..+.+....+|.. .+..+.||.+.
T Consensus 36 ~~~~~g~~v~~~l~N~~~~~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~~~~G~w~ 115 (138)
T PF07731_consen 36 IEVKNGDVVEIVLQNNGSMPHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRADNPGPWL 115 (138)
T ss_dssp EEEETTSEEEEEEEECTTSSEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEETSTEEEE
T ss_pred EEEeCCCEEEEEEECCCCCccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEeecceEEE
Confidence 478889998877752 2 24444333321 122 2222333444544 55668999999
Q ss_pred EEeCCCCCCCCCCeEEEEEec
Q 038631 117 FISGASGHCEKGQRMIIKVMY 137 (185)
Q Consensus 117 FiCgv~~HC~~GmKl~I~V~~ 137 (185)
|=|-+..|=..||-..+.|.+
T Consensus 116 ~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 116 FHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp EEESSHHHHHTT-EEEEEECH
T ss_pred EEEchHHHHhCCCeEEEEEcC
Confidence 999999999999999999875
No 41
>KOG1546 consensus Metacaspase involved in regulation of apoptosis [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=46.33 E-value=9.9 Score=34.85 Aligned_cols=15 Identities=33% Similarity=0.596 Sum_probs=13.0
Q ss_pred eeeeccEeeEEeeCC
Q 038631 64 RFQVGDTIRFKYKKD 78 (185)
Q Consensus 64 tF~vGD~LvF~y~~h 78 (185)
..+.||+|+|+|+.|
T Consensus 134 ~aq~gD~LvfHYSGH 148 (362)
T KOG1546|consen 134 SAQPGDSLVFHYSGH 148 (362)
T ss_pred cCCCCCEEEEEecCC
Confidence 467899999999986
No 42
>PF11132 SplA: Transcriptional regulator protein (SplA); InterPro: IPR022608 The SplA protein functions in trans as a negative regulator of the level of splB-lacZ expression in the developing forespore [].
Probab=45.02 E-value=16 Score=26.54 Aligned_cols=26 Identities=19% Similarity=0.519 Sum_probs=21.0
Q ss_pred CeeeeccEeeEEeeC-C--cEEEEccccc
Q 038631 63 NRFQVGDTIRFKYKK-D--SVMEVTDKEY 88 (185)
Q Consensus 63 ~tF~vGD~LvF~y~~-h--sV~~V~~~~Y 88 (185)
+++++||++-.-|++ | +|..+.+++.
T Consensus 4 ~~~~~GD~VyViYrNPHt~~VanIqeAei 32 (75)
T PF11132_consen 4 KPYHAGDIVYVIYRNPHTQDVANIQEAEI 32 (75)
T ss_pred cccCCCCEEEEEEcCCCCccccccchhhe
Confidence 689999999888886 6 7887776654
No 43
>cd06555 ASCH_PF0470_like ASC-1 homology domain, subfamily similar to Pyrococcus furiosus Pf0470. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.
Probab=44.29 E-value=11 Score=28.85 Aligned_cols=14 Identities=36% Similarity=0.577 Sum_probs=12.0
Q ss_pred CeeeeccEeeEEee
Q 038631 63 NRFQVGDTIRFKYK 76 (185)
Q Consensus 63 ~tF~vGD~LvF~y~ 76 (185)
+.|++||.|+|+=.
T Consensus 30 ~~ikvGD~I~f~~~ 43 (109)
T cd06555 30 QQIKVGDKILFNDL 43 (109)
T ss_pred hcCCCCCEEEEEEc
Confidence 58999999999664
No 44
>PF14326 DUF4384: Domain of unknown function (DUF4384)
Probab=41.98 E-value=1.2e+02 Score=21.28 Aligned_cols=14 Identities=29% Similarity=0.802 Sum_probs=12.2
Q ss_pred eeeeccEeeEEeeC
Q 038631 64 RFQVGDTIRFKYKK 77 (185)
Q Consensus 64 tF~vGD~LvF~y~~ 77 (185)
+|++||.|.|.+..
T Consensus 2 ~~~~Ge~v~~~~~~ 15 (83)
T PF14326_consen 2 VYRVGERVRFRVTS 15 (83)
T ss_pred cccCCCEEEEEEEe
Confidence 68899999999974
No 45
>PLN02792 oxidoreductase
Probab=41.26 E-value=42 Score=32.27 Aligned_cols=42 Identities=21% Similarity=0.139 Sum_probs=34.5
Q ss_pred eCCCCe--EEEecCcccEEEEeCCCCCCCCCCeEEEEEecCCCC
Q 038631 100 SNTGNT--AFRLDHPGPFYFISGASGHCEKGQRMIIKVMYHEES 141 (185)
Q Consensus 100 ~~~G~~--~v~L~~~G~~YFiCgv~~HC~~GmKl~I~V~~~~~p 141 (185)
...|-. +|..+.||..+|=|-...|=..||.+.+.|.....+
T Consensus 466 ~~~gw~aIRf~aDNPGvW~~HCh~~~h~~~Gm~~~~~v~~~~~~ 509 (536)
T PLN02792 466 YPESWTAVYVALDNVGMWNLRSQFWARQYLGQQFYLRVYSPTHS 509 (536)
T ss_pred CCCCEEEEEEEeeCCEEEeeeEcchhccccceEEEEEEccCCCc
Confidence 345544 677899999999999999999999999999866554
No 46
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=41.05 E-value=52 Score=32.03 Aligned_cols=44 Identities=27% Similarity=0.291 Sum_probs=36.6
Q ss_pred eeCCCCe--EEEecCcccEEEEeCCCCCCCCCCeEEEEEecCCCCC
Q 038631 99 FSNTGNT--AFRLDHPGPFYFISGASGHCEKGQRMIIKVMYHEESS 142 (185)
Q Consensus 99 ~~~~G~~--~v~L~~~G~~YFiCgv~~HC~~GmKl~I~V~~~~~p~ 142 (185)
.+.+|-. +|.++.||...|=|-+..|=..||++...|.....+.
T Consensus 497 V~pggw~aIrf~adNPG~W~~HCHie~H~~~G~~~~f~V~~~~~~~ 542 (563)
T KOG1263|consen 497 VPPGGWTAIRFVADNPGVWLMHCHIEDHLYLGMETVFIVGNGEESL 542 (563)
T ss_pred eCCCCEEEEEEEcCCCcEEEEEEecHHHHhccCeEEEEEeCCCccC
Confidence 3445544 5678999999999999999999999999999887653
No 47
>PLN02168 copper ion binding / pectinesterase
Probab=39.89 E-value=1e+02 Score=29.75 Aligned_cols=77 Identities=12% Similarity=0.152 Sum_probs=48.2
Q ss_pred CeeeeccEeeEEeeC----------CcEEEEcccccCC-CCCCCCceeeCCCCeEEEec-CcccEEEEeCCCCCCCCCCe
Q 038631 63 NRFQVGDTIRFKYKK----------DSVMEVTDKEYKK-CNSTHPIFFSNTGNTAFRLD-HPGPFYFISGASGHCEKGQR 130 (185)
Q Consensus 63 ~tF~vGD~LvF~y~~----------hsV~~V~~~~Y~~-C~~s~pi~~~~~G~~~v~L~-~~G~~YFiCgv~~HC~~GmK 130 (185)
.+++.||+|+.+..+ |-+.|-.....|. ....-||....+-...|+++ .+|++||=+-...+=..|+.
T Consensus 59 I~~~~GD~v~V~v~N~L~~~ttiHWHGl~~~~~~~~DGv~gtQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~GL~ 138 (545)
T PLN02168 59 LNATANDVINVNIFNNLTEPFLMTWNGLQLRKNSWQDGVRGTNCPILPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAGGY 138 (545)
T ss_pred EEEECCCEEEEEEEeCCCCCccEeeCCccCCCCCCcCCCCCCcCCCCCCCcEEEEEEeCCCCceEEEecChhhhhhCcce
Confidence 479999999999864 3344332211222 00111333222223478884 79999999977766677999
Q ss_pred EEEEEecCC
Q 038631 131 MIIKVMYHE 139 (185)
Q Consensus 131 l~I~V~~~~ 139 (185)
-.+.|....
T Consensus 139 G~lII~~~~ 147 (545)
T PLN02168 139 GAIRIYNPE 147 (545)
T ss_pred eEEEEcCCc
Confidence 999997644
No 48
>PRK09723 putative fimbrial-like adhesin protein; Provisional
Probab=38.62 E-value=2.9e+02 Score=26.20 Aligned_cols=18 Identities=17% Similarity=0.211 Sum_probs=12.5
Q ss_pred hcccceeeEEEEEeCCCC
Q 038631 27 IHHLPVHSLEFQVGGNRG 44 (185)
Q Consensus 27 l~~~~a~A~~~~VGg~~G 44 (185)
+.........+.||+..|
T Consensus 20 ~~~~~~~~~~~~vg~~~~ 37 (421)
T PRK09723 20 ASAGTDDNVSYIVGNYYG 37 (421)
T ss_pred hhccccCceEEEEccccc
Confidence 333455688899999655
No 49
>PF12961 DUF3850: Domain of Unknown Function with PDB structure (DUF3850)
Probab=38.49 E-value=18 Score=25.96 Aligned_cols=13 Identities=38% Similarity=0.820 Sum_probs=10.6
Q ss_pred CCeeeeccEeeEE
Q 038631 62 ENRFQVGDTIRFK 74 (185)
Q Consensus 62 ~~tF~vGD~LvF~ 74 (185)
.+.|+|||.|+++
T Consensus 26 DRdf~VGD~L~L~ 38 (72)
T PF12961_consen 26 DRDFQVGDILVLR 38 (72)
T ss_pred CCCCCCCCEEEEE
Confidence 3689999999864
No 50
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=38.11 E-value=45 Score=28.30 Aligned_cols=31 Identities=19% Similarity=0.443 Sum_probs=24.5
Q ss_pred EEEecCcccEEEEeCCCCCCCCC---CeEEEEEecC
Q 038631 106 AFRLDHPGPFYFISGASGHCEKG---QRMIIKVMYH 138 (185)
Q Consensus 106 ~v~L~~~G~~YFiCgv~~HC~~G---mKl~I~V~~~ 138 (185)
.++.+++|.+|..|+. -|..| |++.|.|.+.
T Consensus 183 ~~~~~~~g~y~~~C~e--~CG~~H~~M~~~v~v~~~ 216 (228)
T MTH00140 183 SFEPKRPGVFYGQCSE--ICGANHSFMPIVVEAVPL 216 (228)
T ss_pred EEEeCCCEEEEEECcc--ccCcCcCCCeEEEEEECH
Confidence 5567899999999986 66554 9999988753
No 51
>PLN02792 oxidoreductase
Probab=36.13 E-value=1.2e+02 Score=29.19 Aligned_cols=76 Identities=13% Similarity=0.190 Sum_probs=46.4
Q ss_pred CeeeeccEeeEEeeC----------CcEEEEcccccCC-CCCCCCceeeCCCCeEEEe-cCcccEEEEeCCCCCCCCCCe
Q 038631 63 NRFQVGDTIRFKYKK----------DSVMEVTDKEYKK-CNSTHPIFFSNTGNTAFRL-DHPGPFYFISGASGHCEKGQR 130 (185)
Q Consensus 63 ~tF~vGD~LvF~y~~----------hsV~~V~~~~Y~~-C~~s~pi~~~~~G~~~v~L-~~~G~~YFiCgv~~HC~~GmK 130 (185)
.+++.||+|+.+..+ |-+.|-.....|. -...-||....+=...|++ +.+|++||=+-...+-..|+.
T Consensus 49 I~~~~GD~v~V~v~N~L~~~ttiHWHGl~q~~~~~~DGv~~tqcPI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~ 128 (536)
T PLN02792 49 IRSLTNDNLVINVHNDLDEPFLLSWNGVHMRKNSYQDGVYGTTCPIPPGKNYTYDFQVKDQVGSYFYFPSLAVQKAAGGY 128 (536)
T ss_pred EEEECCCEEEEEEEeCCCCCcCEeCCCcccCCCCccCCCCCCcCccCCCCcEEEEEEeCCCccceEEecCcchhhhcccc
Confidence 478999999988864 3454432111121 0001133222222347777 479999999988777777888
Q ss_pred EEEEEecC
Q 038631 131 MIIKVMYH 138 (185)
Q Consensus 131 l~I~V~~~ 138 (185)
-.+.|.+.
T Consensus 129 G~liI~~~ 136 (536)
T PLN02792 129 GSLRIYSL 136 (536)
T ss_pred cceEEeCC
Confidence 88877653
No 52
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=32.38 E-value=1.2e+02 Score=29.70 Aligned_cols=75 Identities=16% Similarity=0.180 Sum_probs=44.8
Q ss_pred CeeeeccEeeEEeeCC-----cEE----EEcccccCC-CCCC-CCceeeCCCCeEEEecCcccEEEEeCCCCCCCCCCeE
Q 038631 63 NRFQVGDTIRFKYKKD-----SVM----EVTDKEYKK-CNST-HPIFFSNTGNTAFRLDHPGPFYFISGASGHCEKGQRM 131 (185)
Q Consensus 63 ~tF~vGD~LvF~y~~h-----sV~----~V~~~~Y~~-C~~s-~pi~~~~~G~~~v~L~~~G~~YFiCgv~~HC~~GmKl 131 (185)
.+++.||.++.++.++ ++. .+. ...|. ...+ .+|....+-...|++..+|+|||=|-...+=+.|+--
T Consensus 78 ir~~~Gd~v~v~v~N~l~~~tsiHwHGl~~~-~~~DGvP~vt~~~I~PG~s~~Y~f~~~~~GTyWYHsH~~~q~~~GL~G 156 (587)
T TIGR01480 78 LRWREGDTVRLRVTNTLPEDTSIHWHGILLP-FQMDGVPGVSFAGIAPGETFTYRFPVRQSGTYWYHSHSGFQEQAGLYG 156 (587)
T ss_pred EEEECCCEEEEEEEcCCCCCceEEcCCCcCC-ccccCCCcccccccCCCCeEEEEEECCCCeeEEEecCchhHhhccceE
Confidence 4789999999988641 211 111 11111 1111 1221111223477888999999999877777789998
Q ss_pred EEEEecC
Q 038631 132 IIKVMYH 138 (185)
Q Consensus 132 ~I~V~~~ 138 (185)
.+.|.+.
T Consensus 157 ~lIV~~~ 163 (587)
T TIGR01480 157 PLIIDPA 163 (587)
T ss_pred EEEECCC
Confidence 8888643
No 53
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=32.20 E-value=1.3e+02 Score=28.59 Aligned_cols=78 Identities=12% Similarity=0.101 Sum_probs=0.0
Q ss_pred eeeeccEeeEEeeC----------CcEEEEcccccCC--CCCCCCceeeCCCCeEEEe-cCcccEEEEeCCCCCCCCCCe
Q 038631 64 RFQVGDTIRFKYKK----------DSVMEVTDKEYKK--CNSTHPIFFSNTGNTAFRL-DHPGPFYFISGASGHCEKGQR 130 (185)
Q Consensus 64 tF~vGD~LvF~y~~----------hsV~~V~~~~Y~~--C~~s~pi~~~~~G~~~v~L-~~~G~~YFiCgv~~HC~~GmK 130 (185)
+++.||+++.+..+ |.+.|......|. .-..-||....+-...|++ +.+|++||=|-. .+...||.
T Consensus 37 ~~~~GD~v~v~v~N~l~~~tsiHwHGl~q~~~~~~DGv~~vTq~pI~PG~s~~Y~f~~~~~~GT~WYHsH~-~~~~~Gl~ 115 (539)
T TIGR03389 37 YAREGDTVIVNVTNNVQYNVTIHWHGVRQLRNGWADGPAYITQCPIQPGQSYVYNFTITGQRGTLWWHAHI-SWLRATVY 115 (539)
T ss_pred EEEcCCEEEEEEEeCCCCCeeEecCCCCCCCCCCCCCCcccccCCcCCCCeEEEEEEecCCCeeEEEecCc-hhhhccce
Q ss_pred EEEEEecCCCCC
Q 038631 131 MIIKVMYHEESS 142 (185)
Q Consensus 131 l~I~V~~~~~p~ 142 (185)
-.|.|......+
T Consensus 116 G~lIV~~~~~~~ 127 (539)
T TIGR03389 116 GAIVILPKPGVP 127 (539)
T ss_pred EEEEEcCCCCCC
No 54
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=31.95 E-value=65 Score=26.54 Aligned_cols=30 Identities=13% Similarity=0.192 Sum_probs=22.8
Q ss_pred EEEecCcccEEEEeCCCCCCC---CCCeEEEEEec
Q 038631 106 AFRLDHPGPFYFISGASGHCE---KGQRMIIKVMY 137 (185)
Q Consensus 106 ~v~L~~~G~~YFiCgv~~HC~---~GmKl~I~V~~ 137 (185)
.+..+++|.+|..|+. .|. ..|.+.|.|.+
T Consensus 116 ~~~~~~~G~y~gqCsE--lCG~gHs~M~~~V~vvs 148 (162)
T PTZ00047 116 NTFILREGVFYGQCSE--MCGTLHGFMPIVVEAVS 148 (162)
T ss_pred EEecCCCeEEEEEcch--hcCcCccCceEEEEEeC
Confidence 4466899999999986 444 44998888865
No 55
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=31.77 E-value=66 Score=27.39 Aligned_cols=30 Identities=20% Similarity=0.423 Sum_probs=23.4
Q ss_pred EEEecCcccEEEEeCCCCCCCC---CCeEEEEEec
Q 038631 106 AFRLDHPGPFYFISGASGHCEK---GQRMIIKVMY 137 (185)
Q Consensus 106 ~v~L~~~G~~YFiCgv~~HC~~---GmKl~I~V~~ 137 (185)
.++.+++|.+|..|+. -|.. -|++.|.|.+
T Consensus 183 ~~~~~~~G~y~g~Cse--~CG~~H~~M~~~v~vv~ 215 (227)
T MTH00154 183 NFLINRPGLFFGQCSE--ICGANHSFMPIVIESVS 215 (227)
T ss_pred EEEEcCceEEEEEeec--hhCcCccCCeEEEEEeC
Confidence 5677899999999975 5544 4898888875
No 56
>smart00495 ChtBD3 Chitin-binding domain type 3.
Probab=31.38 E-value=26 Score=21.49 Aligned_cols=18 Identities=17% Similarity=0.628 Sum_probs=13.4
Q ss_pred hhhhccCCeeeeccEeeE
Q 038631 56 YNDWASENRFQVGDTIRF 73 (185)
Q Consensus 56 Y~~Wa~~~tF~vGD~LvF 73 (185)
|..|..++.-..||.+.+
T Consensus 1 ~~~W~~~~~Y~~Gd~V~~ 18 (41)
T smart00495 1 APAWQAGTVYTAGDVVSY 18 (41)
T ss_pred CCccCCCCcCcCCCEEEE
Confidence 456878887778888765
No 57
>MTH00168 COX2 cytochrome c oxidase subunit II; Provisional
Probab=30.27 E-value=70 Score=27.16 Aligned_cols=31 Identities=23% Similarity=0.466 Sum_probs=23.8
Q ss_pred EEEecCcccEEEEeCCCCCCCCC---CeEEEEEecC
Q 038631 106 AFRLDHPGPFYFISGASGHCEKG---QRMIIKVMYH 138 (185)
Q Consensus 106 ~v~L~~~G~~YFiCgv~~HC~~G---mKl~I~V~~~ 138 (185)
.++.+++|.+|..|+. -|..| |++.|.|.+.
T Consensus 183 ~~~~~~~G~~~g~CsE--~CG~~Hs~M~~~v~vv~~ 216 (225)
T MTH00168 183 AFLSSRPGSFYGQCSE--ICGANHSFMPIVVEFVPW 216 (225)
T ss_pred EEEcCCCEEEEEEccc--ccCcCcCCCeEEEEEeCH
Confidence 5567899999999975 55544 8988888753
No 58
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=29.55 E-value=66 Score=27.47 Aligned_cols=31 Identities=23% Similarity=0.384 Sum_probs=23.6
Q ss_pred EEEecCcccEEEEeCCCCCCC---CCCeEEEEEecC
Q 038631 106 AFRLDHPGPFYFISGASGHCE---KGQRMIIKVMYH 138 (185)
Q Consensus 106 ~v~L~~~G~~YFiCgv~~HC~---~GmKl~I~V~~~ 138 (185)
.+..+++|.+|..|+. -|. ..|++.|.|.+.
T Consensus 183 ~~~~~~~G~~~g~C~e--~CG~~H~~M~~~v~vv~~ 216 (230)
T MTH00129 183 AFIASRPGVFYGQCSE--ICGANHSFMPIVVEAVPL 216 (230)
T ss_pred EEEeCCceEEEEEChh--hccccccCCcEEEEEECH
Confidence 5567899999999986 444 458988888753
No 59
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=28.80 E-value=79 Score=26.89 Aligned_cols=30 Identities=20% Similarity=0.379 Sum_probs=23.5
Q ss_pred EEEecCcccEEEEeCCCCCCCC---CCeEEEEEec
Q 038631 106 AFRLDHPGPFYFISGASGHCEK---GQRMIIKVMY 137 (185)
Q Consensus 106 ~v~L~~~G~~YFiCgv~~HC~~---GmKl~I~V~~ 137 (185)
.++.+++|.+|-.|+. -|.. .|++.|.|.+
T Consensus 183 ~~~~~~~G~y~g~CsE--~CG~~Hs~M~~~v~vv~ 215 (227)
T MTH00117 183 SFITTRPGVFYGQCSE--ICGANHSFMPIVVESVP 215 (227)
T ss_pred EEEEcccceEEEEecc--ccccCccCCeEEEEEcC
Confidence 5577899999999986 5554 4898888865
No 60
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]
Probab=28.46 E-value=59 Score=26.01 Aligned_cols=31 Identities=29% Similarity=0.426 Sum_probs=20.3
Q ss_pred EEEEeCCCCCCCCCCCCCcchhhhc-cCCeeeeccEeeEE
Q 038631 36 EFQVGGNRGWVVPPANDSKIYNDWA-SENRFQVGDTIRFK 74 (185)
Q Consensus 36 ~~~VGg~~GW~~p~~~~~~~Y~~Wa-~~~tF~vGD~LvF~ 74 (185)
..+|||+.| ..+..-|- .+..|+.||.|.|.
T Consensus 40 ~~kVaD~Tg--------sI~isvW~e~~~~~~PGDIirLt 71 (134)
T KOG3416|consen 40 SCKVADETG--------SINISVWDEEGCLIQPGDIIRLT 71 (134)
T ss_pred EEEEecccc--------eEEEEEecCcCcccCCccEEEec
Confidence 467888877 12334443 25789999988764
No 61
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=28.20 E-value=77 Score=27.02 Aligned_cols=31 Identities=13% Similarity=0.293 Sum_probs=23.5
Q ss_pred EEEecCcccEEEEeCCCCCCCC---CCeEEEEEecC
Q 038631 106 AFRLDHPGPFYFISGASGHCEK---GQRMIIKVMYH 138 (185)
Q Consensus 106 ~v~L~~~G~~YFiCgv~~HC~~---GmKl~I~V~~~ 138 (185)
.++.+++|.+|..|+. -|.. -|.+.|.|.+.
T Consensus 183 ~~~~~~~G~~~g~Cse--~CG~~H~~M~~~v~v~~~ 216 (227)
T MTH00098 183 TLMSTRPGLYYGQCSE--ICGSNHSFMPIVLELVPL 216 (227)
T ss_pred EEecCCcEEEEEECcc--ccCcCcCCceEEEEEeCH
Confidence 5567899999999986 5544 48888887653
No 62
>PF10377 ATG11: Autophagy-related protein 11; InterPro: IPR019460 This family consists of proteins involved in telomere maintenance. In Schizosaccharomyces pombe (fission yeast) this protein is called Taf1 (taz1 interacting factor) and is part of the telomere cap complex. In Saccharomyces cerevisiae (baker's yeast) this protein is called ATG11 and is known to be involved in vacuolar targeting and peroxisome degradation [, ].
Probab=28.20 E-value=99 Score=24.14 Aligned_cols=15 Identities=40% Similarity=0.649 Sum_probs=13.5
Q ss_pred CeeeeccEeeEEeeC
Q 038631 63 NRFQVGDTIRFKYKK 77 (185)
Q Consensus 63 ~tF~vGD~LvF~y~~ 77 (185)
+.|++||.+.|-++.
T Consensus 41 ~~f~~GDlvLflpt~ 55 (129)
T PF10377_consen 41 RNFQVGDLVLFLPTR 55 (129)
T ss_pred ecCCCCCEEEEEecC
Confidence 479999999999986
No 63
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional
Probab=27.96 E-value=77 Score=26.85 Aligned_cols=31 Identities=19% Similarity=0.442 Sum_probs=23.9
Q ss_pred EEEecCcccEEEEeCCCCCCCC---CCeEEEEEecC
Q 038631 106 AFRLDHPGPFYFISGASGHCEK---GQRMIIKVMYH 138 (185)
Q Consensus 106 ~v~L~~~G~~YFiCgv~~HC~~---GmKl~I~V~~~ 138 (185)
.++.+++|.+|..|+. -|.. -|++.|.|.+.
T Consensus 183 ~~~~~~~G~y~g~CsE--~CG~~Hs~M~~~v~vv~~ 216 (226)
T MTH00139 183 GFFINRPGVFYGQCSE--ICGANHSFMPIVVEAISP 216 (226)
T ss_pred EEEcCCCEEEEEEChh--hcCcCcCCCeEEEEEeCH
Confidence 5677899999999985 5554 48998888753
No 64
>PF06462 Hyd_WA: Propeller; InterPro: IPR006624 Tectonins I and II are two dominant proteins in the nuclei and nuclear matrix from plasmodia of Physarum polycephalum (Slime mold) which encode 217 and 353 amino acids, respectively. Tectonin I is homologous to the C-terminal two-thirds of tectonin II. Both proteins contain six tandem repeats that are each 33-37 amino acids in length and define a new consensus sequence. Homologous repeats are found in L-6, a bacterial lipopolysaccharide-binding lectin from horseshoe crab hemocytes. The repetitive sequences of the tectonins and L-6 are reminiscent of the WD repeats of the beta-subunit of G proteins, suggesting that they form beta-propeller domains. The tectonins may be lectins that function as part of a transmembrane signalling complex during phagocytosis [].
Probab=27.01 E-value=1.3e+02 Score=17.82 Aligned_cols=25 Identities=24% Similarity=0.488 Sum_probs=21.1
Q ss_pred EEEecCcccEEEEeCCCCCCCCCCe
Q 038631 106 AFRLDHPGPFYFISGASGHCEKGQR 130 (185)
Q Consensus 106 ~v~L~~~G~~YFiCgv~~HC~~GmK 130 (185)
+.-+++-|.-||=.|+...|..|+.
T Consensus 3 VWav~~~G~v~~R~Gis~~~P~G~~ 27 (32)
T PF06462_consen 3 VWAVTSDGSVYFRTGISPSNPEGTS 27 (32)
T ss_pred EEEEcCCCCEEEECcCCCCCCCCCC
Confidence 4567788999999999999999974
No 65
>COG3627 PhnJ Uncharacterized enzyme of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=26.62 E-value=41 Score=29.36 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=21.0
Q ss_pred eEEEecCcccEEEEeCCCCCCCCC
Q 038631 105 TAFRLDHPGPFYFISGASGHCEKG 128 (185)
Q Consensus 105 ~~v~L~~~G~~YFiCgv~~HC~~G 128 (185)
+.|.++.-|-+-|+|+..+||+.-
T Consensus 257 DEvi~DD~G~rmfvCSDTD~C~~r 280 (291)
T COG3627 257 DEVVLDDKGGRMFVCSDTDFCEQR 280 (291)
T ss_pred eeeEEcCCCceEEEecCchHHHhH
Confidence 578888889999999999999864
No 66
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=26.34 E-value=1.4e+02 Score=20.93 Aligned_cols=27 Identities=26% Similarity=0.149 Sum_probs=12.5
Q ss_pred CCCCCCCCchhhHHHHH-HHHHHHHHHH
Q 038631 149 HGHKSSASPAAVLALAV-SKLAIVQFLL 175 (185)
Q Consensus 149 ~~~~s~~s~~~~~~~~~-~~~~~~~~~~ 175 (185)
|..|+++...-++.+++ .|+..++.+.
T Consensus 50 P~~P~~P~~~lil~l~~~~Gl~lgi~~~ 77 (82)
T PF13807_consen 50 PDKPVSPKRALILALGLFLGLILGIGLA 77 (82)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555443333 4444444443
No 67
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=26.19 E-value=80 Score=26.93 Aligned_cols=31 Identities=16% Similarity=0.161 Sum_probs=24.3
Q ss_pred EEEecCcccEEEEeCCCCCCCC---CCeEEEEEecC
Q 038631 106 AFRLDHPGPFYFISGASGHCEK---GQRMIIKVMYH 138 (185)
Q Consensus 106 ~v~L~~~G~~YFiCgv~~HC~~---GmKl~I~V~~~ 138 (185)
.++.+++|.|+-.|.. .|.. .|++.|.|.+.
T Consensus 182 ~~~~~~~G~y~g~CaE--~CG~~Ha~M~~~V~v~~~ 215 (226)
T TIGR01433 182 HLIANEPGVYDGISAN--YSGPGFSGMKFKAIATDR 215 (226)
T ss_pred EEEeCCCEEEEEEchh--hcCcCccCCeEEEEEECH
Confidence 5678899999999975 5544 49999988753
No 68
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=26.13 E-value=94 Score=26.48 Aligned_cols=31 Identities=19% Similarity=0.385 Sum_probs=23.8
Q ss_pred EEEecCcccEEEEeCCCCCCCCC---CeEEEEEecC
Q 038631 106 AFRLDHPGPFYFISGASGHCEKG---QRMIIKVMYH 138 (185)
Q Consensus 106 ~v~L~~~G~~YFiCgv~~HC~~G---mKl~I~V~~~ 138 (185)
.++.+++|.+|..|+. -|..| |++.|.|.+.
T Consensus 183 ~~~~~~~G~~~g~Cse--~CG~~Hs~M~~~v~vv~~ 216 (229)
T MTH00038 183 TFFISRTGLFYGQCSE--ICGANHSFMPIVIESVPF 216 (229)
T ss_pred EEEcCCCEEEEEEccc--ccCcCcCCCeEEEEEeCH
Confidence 5567899999999975 55554 8988888653
No 69
>PF04014 Antitoxin-MazE: Antidote-toxin recognition MazE; InterPro: IPR007159 This domain is found in AbrB from Bacillus subtilis. The product of the abrB gene is an ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation []. AbrB is thought to interact directly with the transcription initiation regions of genes under its control []. AbrB contains a helix-turn-helix structure, but this domain ends before the helix-turn-helix begins []. The product of the B. subtilis gene spoVT is another member of this family and is also a transcriptional regulator []. DNA-binding activity in this AbrB homologue requires hexamerisation []. Another family member has been isolated from the Sulfolobus solfataricus and has been identified as a homologue of bacterial repressor-like proteins. The Escherichia coli family member SohA or Prl1F appears to be bifunctional and is able to regulate its own expression as well as relieve the export block imposed by high-level synthesis of beta-galactosidase hybrid proteins [].; PDB: 2L66_A 2GLW_A 3TND_D 2W1T_B 2RO5_B 2FY9_A 2RO3_B 1UB4_C 3ZVK_G 1YFB_B ....
Probab=25.92 E-value=41 Score=21.25 Aligned_cols=33 Identities=18% Similarity=0.402 Sum_probs=24.6
Q ss_pred EEeCCCCCCCCCCCCCcchhhhccCCeeeeccEeeEEeeCC
Q 038631 38 QVGGNRGWVVPPANDSKIYNDWASENRFQVGDTIRFKYKKD 78 (185)
Q Consensus 38 ~VGg~~GW~~p~~~~~~~Y~~Wa~~~tF~vGD~LvF~y~~h 78 (185)
+||.+.+=++| .+|...-.++.||.|.+.+..+
T Consensus 2 kvg~s~~v~iP--------k~~~~~l~l~~Gd~v~i~~~~~ 34 (47)
T PF04014_consen 2 KVGNSGQVTIP--------KEIREKLGLKPGDEVEIEVEGD 34 (47)
T ss_dssp EETTCSEEEE---------HHHHHHTTSSTTTEEEEEEETT
T ss_pred EECCCceEECC--------HHHHHHcCCCCCCEEEEEEeCC
Confidence 46666666665 4677777889999999999875
No 70
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=25.71 E-value=1.5e+02 Score=29.01 Aligned_cols=61 Identities=16% Similarity=0.393 Sum_probs=42.9
Q ss_pred ccCCeeeeccEeeEEeeC--CcEEEEcccccCCCCCCC----Cce-eeCCCC-eEEEecCcccEEEEeC
Q 038631 60 ASENRFQVGDTIRFKYKK--DSVMEVTDKEYKKCNSTH----PIF-FSNTGN-TAFRLDHPGPFYFISG 120 (185)
Q Consensus 60 a~~~tF~vGD~LvF~y~~--hsV~~V~~~~Y~~C~~s~----pi~-~~~~G~-~~v~L~~~G~~YFiCg 120 (185)
.++|+|..-|.++|+|++ ..++.+...+.|.-+.+- .+- ....|+ -+|.|.+.|+.|=+|=
T Consensus 210 ~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W 278 (566)
T KOG2315|consen 210 VANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTW 278 (566)
T ss_pred hhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEEE
Confidence 457899999999999997 356666777777766542 111 112355 4899999999876653
No 71
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=24.89 E-value=33 Score=24.08 Aligned_cols=30 Identities=10% Similarity=0.354 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHhcccceeeEEEEEeCCCCC
Q 038631 16 TLLLLAIIISSIHHLPVHSLEFQVGGNRGW 45 (185)
Q Consensus 16 ~~~l~~l~~~~l~~~~a~A~~~~VGg~~GW 45 (185)
+++++++++++|.+-+.+|-+|.-|+.--.
T Consensus 4 Kl~vialLC~aLva~vQ~APQYa~GeeP~Y 33 (65)
T PF10731_consen 4 KLIVIALLCVALVAIVQSAPQYAPGEEPSY 33 (65)
T ss_pred hhhHHHHHHHHHHHHHhcCcccCCCCCCCc
Confidence 455556666666665667888888875443
No 72
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=24.81 E-value=57 Score=28.22 Aligned_cols=26 Identities=23% Similarity=0.419 Sum_probs=19.2
Q ss_pred ceeeEEEEEeCCCCCCCCCCCCCcchhhhcc
Q 038631 31 PVHSLEFQVGGNRGWVVPPANDSKIYNDWAS 61 (185)
Q Consensus 31 ~a~A~~~~VGg~~GW~~p~~~~~~~Y~~Wa~ 61 (185)
..+...|..++.+||.+-| +++-|.+
T Consensus 220 ~g~~~n~~~~g~~g~e~iP-----~~dfw~~ 245 (268)
T PF09451_consen 220 FGSWYNYNRYGARGFELIP-----HFDFWRS 245 (268)
T ss_pred hhhheeeccCCCCCceecc-----cHhHHHh
Confidence 4467889999999999865 3566654
No 73
>PF15345 TMEM51: Transmembrane protein 51
Probab=24.07 E-value=94 Score=27.10 Aligned_cols=19 Identities=21% Similarity=0.438 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 038631 161 LALAVSKLAIVQFLLLLCT 179 (185)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~ 179 (185)
.+++.++++++.|||-+|.
T Consensus 60 VAyVLVG~Gv~LLLLSICL 78 (233)
T PF15345_consen 60 VAYVLVGSGVALLLLSICL 78 (233)
T ss_pred EEEehhhHHHHHHHHHHHH
Confidence 4555566677777777775
No 74
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=24.07 E-value=92 Score=26.11 Aligned_cols=31 Identities=13% Similarity=0.187 Sum_probs=24.9
Q ss_pred EEEecCcccEEEEeCCCCCCCCC---CeEEEEEecC
Q 038631 106 AFRLDHPGPFYFISGASGHCEKG---QRMIIKVMYH 138 (185)
Q Consensus 106 ~v~L~~~G~~YFiCgv~~HC~~G---mKl~I~V~~~ 138 (185)
.++-+++|.++-.|+. .|..| |++.|.|.++
T Consensus 173 ~~~~~~~G~y~g~Cae--~CG~~Hs~M~~~v~v~~~ 206 (217)
T TIGR01432 173 YLQADQVGTYRGRNAN--FNGEGFADQTFDVNAVSE 206 (217)
T ss_pred EEEeCCCEEEEEEehh--hcCccccCCeEEEEEeCH
Confidence 6777899999999985 56554 9999998754
No 75
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=23.66 E-value=1e+02 Score=26.41 Aligned_cols=31 Identities=23% Similarity=0.475 Sum_probs=24.1
Q ss_pred EEEecCcccEEEEeCCCCCCCCC---CeEEEEEecC
Q 038631 106 AFRLDHPGPFYFISGASGHCEKG---QRMIIKVMYH 138 (185)
Q Consensus 106 ~v~L~~~G~~YFiCgv~~HC~~G---mKl~I~V~~~ 138 (185)
.++.+++|.+|..|+. .|..| |++.|.|.+.
T Consensus 194 ~~~~~~~G~y~g~C~e--~CG~~Hs~M~~~v~vv~~ 227 (240)
T MTH00023 194 GFFIKRPGVFYGQCSE--ICGANHSFMPIVIEAVSL 227 (240)
T ss_pred EEEcCCCEEEEEEchh--hcCcCccCCeEEEEEECH
Confidence 5567899999999975 56554 8988888753
No 76
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=23.21 E-value=4e+02 Score=26.04 Aligned_cols=79 Identities=16% Similarity=0.136 Sum_probs=51.3
Q ss_pred CeeeeccEeeEEeeC----------CcEEEEccccc-CCCCCCC-CceeeCCCCeEEEec-CcccEEEEeCCCCCCCCCC
Q 038631 63 NRFQVGDTIRFKYKK----------DSVMEVTDKEY-KKCNSTH-PIFFSNTGNTAFRLD-HPGPFYFISGASGHCEKGQ 129 (185)
Q Consensus 63 ~tF~vGD~LvF~y~~----------hsV~~V~~~~Y-~~C~~s~-pi~~~~~G~~~v~L~-~~G~~YFiCgv~~HC~~Gm 129 (185)
.....||+|+-+..+ |-|.|- +..| |.=-.++ ||....+=...|+++ ..|++|+.....-|=..|+
T Consensus 61 I~~~~gD~ivV~v~N~~~~~~sihWhGv~q~-kn~w~DG~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra~G~ 139 (563)
T KOG1263|consen 61 INAEEGDTIVVNVVNRLDEPFSIHWHGVRQR-KNPWQDGVYITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQRATGV 139 (563)
T ss_pred EEEEeCCEEEEEEEeCCCCceEEEecccccc-CCccccCCccccCCcCCCCeEEEEEEeCCcceeEEEeeccccccccCc
Confidence 478899999988763 345442 2222 2200011 332222223478887 8899999999999999999
Q ss_pred eEEEEEecCCCCC
Q 038631 130 RMIIKVMYHEESS 142 (185)
Q Consensus 130 Kl~I~V~~~~~p~ 142 (185)
.-++.|.+....|
T Consensus 140 ~G~liI~~~~~~p 152 (563)
T KOG1263|consen 140 FGALIINPRPGLP 152 (563)
T ss_pred eeEEEEcCCccCC
Confidence 9999998776533
No 77
>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]
Probab=22.87 E-value=2.2e+02 Score=27.68 Aligned_cols=17 Identities=29% Similarity=0.839 Sum_probs=11.4
Q ss_pred ccc-EEEEeCCCCCCCCC
Q 038631 112 PGP-FYFISGASGHCEKG 128 (185)
Q Consensus 112 ~G~-~YFiCgv~~HC~~G 128 (185)
+|. .||-|=-++.|+.-
T Consensus 111 ~g~t~~~CcCs~~~CN~n 128 (534)
T KOG3653|consen 111 PGQTLYFCCCSTDFCNAN 128 (534)
T ss_pred CCCeEEEEecCCCcccCC
Confidence 454 56666568999884
No 78
>PF09792 But2: Ubiquitin 3 binding protein But2 C-terminal domain; InterPro: IPR018620 This entry represents a presumed C-terminal domain of ubiquitin 3 binding proteins (But2). But2 is conserved in yeasts. It binds to Uba3 and is involved in the NEDD8 signalling pathway [].
Probab=22.85 E-value=1.3e+02 Score=23.96 Aligned_cols=32 Identities=22% Similarity=0.375 Sum_probs=26.2
Q ss_pred EEEecCcccEEEEeCCCCCCCCCCeEEEEEecCCC
Q 038631 106 AFRLDHPGPFYFISGASGHCEKGQRMIIKVMYHEE 140 (185)
Q Consensus 106 ~v~L~~~G~~YFiCgv~~HC~~GmKl~I~V~~~~~ 140 (185)
++++.. |..|-|.. ..|..||++...+.....
T Consensus 100 ~~~~~p-G~~y~i~~--f~Cp~g~~v~ye~~~~g~ 131 (143)
T PF09792_consen 100 TFTVSP-GNSYVINT--FPCPAGQAVSYEMSSAGD 131 (143)
T ss_pred ceEECC-CCceEeCc--EeCCCCCEEEEEEEecCC
Confidence 567765 99999986 699999999998876543
No 79
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=22.27 E-value=1.1e+02 Score=25.96 Aligned_cols=31 Identities=19% Similarity=0.436 Sum_probs=23.7
Q ss_pred EEEecCcccEEEEeCCCCCCCC---CCeEEEEEecC
Q 038631 106 AFRLDHPGPFYFISGASGHCEK---GQRMIIKVMYH 138 (185)
Q Consensus 106 ~v~L~~~G~~YFiCgv~~HC~~---GmKl~I~V~~~ 138 (185)
.++.+++|.+|..|+. -|.. .|++.|.|.+.
T Consensus 183 ~~~~~~~G~~~g~Cse--~CG~~Hs~M~~~v~vv~~ 216 (228)
T MTH00008 183 GFTITRPGVFYGQCSE--ICGANHSFMPIVLEAVDT 216 (228)
T ss_pred EEEeCCCEEEEEEChh--hcCcCccCceeEEEEECH
Confidence 5567899999999986 5544 48988888653
No 80
>PLN02835 oxidoreductase
Probab=22.11 E-value=1.4e+02 Score=28.63 Aligned_cols=41 Identities=22% Similarity=0.195 Sum_probs=33.6
Q ss_pred CCCCe--EEEecCcccEEEEeCCCCCCCCCCeEEEEEecCCCC
Q 038631 101 NTGNT--AFRLDHPGPFYFISGASGHCEKGQRMIIKVMYHEES 141 (185)
Q Consensus 101 ~~G~~--~v~L~~~G~~YFiCgv~~HC~~GmKl~I~V~~~~~p 141 (185)
..|-. +|..+.||...|=|-+..|=..||.+.+.|.....+
T Consensus 475 ~~gw~~IrF~aDNPG~Wl~HCHi~~H~~~Gm~~~~~V~~~~~~ 517 (539)
T PLN02835 475 PKSWTTILVSLDNQGMWNMRSAIWERQYLGQQFYLRVWNQVHS 517 (539)
T ss_pred CCCEEEEEEECcCCEEeeeeecchhhhhcccEEEEEEccCCCc
Confidence 34544 567789999999999999999999999999876443
No 81
>PLN02991 oxidoreductase
Probab=21.61 E-value=1.4e+02 Score=28.81 Aligned_cols=42 Identities=21% Similarity=0.142 Sum_probs=33.1
Q ss_pred CCCCe--EEEecCcccEEEEeCCCCCCCCCCeEEEEEecCCCCC
Q 038631 101 NTGNT--AFRLDHPGPFYFISGASGHCEKGQRMIIKVMYHEESS 142 (185)
Q Consensus 101 ~~G~~--~v~L~~~G~~YFiCgv~~HC~~GmKl~I~V~~~~~p~ 142 (185)
..|-. +|..+.||..+|=|-+..|=..||.+...|.+...+.
T Consensus 474 ~~Gw~vIRF~aDNPG~W~~HCHi~~h~~~gm~~~~~v~~~~~~~ 517 (543)
T PLN02991 474 PRSWTAIYVSLDNVGMWNLRSELWERQYLGQQFYMRVYTTSTSL 517 (543)
T ss_pred CCCEEEEEEECCCCEEeeeeeCccccccccEEEEEEecCCCCcc
Confidence 45544 6677999999999999777778999999888666543
No 82
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=21.24 E-value=93 Score=19.95 Aligned_cols=23 Identities=39% Similarity=0.538 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcccC
Q 038631 162 ALAVSKLAIVQFLLLLCTTASYL 184 (185)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~ 184 (185)
+.++.++.+++++.+++..+.++
T Consensus 16 k~a~~gl~il~~~vl~ai~~p~~ 38 (56)
T PF12911_consen 16 KLAVIGLIILLILVLLAIFAPFI 38 (56)
T ss_pred chHHHHHHHHHHHHHHHHHHHHc
Confidence 45666777777777777665443
No 83
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=21.06 E-value=74 Score=23.75 Aligned_cols=23 Identities=35% Similarity=0.316 Sum_probs=16.1
Q ss_pred chhhHHHHHHHHHHHHHHhcccc
Q 038631 9 SKNSVNLTLLLLAIIISSIHHLP 31 (185)
Q Consensus 9 ~~~~~~~~~~l~~l~~~~l~~~~ 31 (185)
||+.+-|.++|.++++++...++
T Consensus 3 SK~~llL~l~LA~lLlisSevaa 25 (95)
T PF07172_consen 3 SKAFLLLGLLLAALLLISSEVAA 25 (95)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhh
Confidence 68888998888666666554443
No 84
>PLN02354 copper ion binding / oxidoreductase
Probab=20.92 E-value=1.9e+02 Score=27.98 Aligned_cols=41 Identities=20% Similarity=0.186 Sum_probs=33.3
Q ss_pred CCCCe--EEEecCcccEEEEeCCCCCCCCCCeEEEEEecCCCC
Q 038631 101 NTGNT--AFRLDHPGPFYFISGASGHCEKGQRMIIKVMYHEES 141 (185)
Q Consensus 101 ~~G~~--~v~L~~~G~~YFiCgv~~HC~~GmKl~I~V~~~~~p 141 (185)
..|-. +|..+.||...|=|-+..|=..||.+.+.|.++...
T Consensus 482 ~~Gw~vIRF~aDNPGvW~~HCHi~~H~~~g~~l~~~v~~~~~~ 524 (552)
T PLN02354 482 PKSWAAILLTFDNAGMWNIRSENWERRYLGQQLYASVLSPERS 524 (552)
T ss_pred CCCeEEEEEEecCCeEEeeeccccccccccceEEEEEeCCccc
Confidence 35544 667899999999999988888999999999866543
No 85
>MTH00076 COX2 cytochrome c oxidase subunit II; Provisional
Probab=20.91 E-value=1.2e+02 Score=25.82 Aligned_cols=30 Identities=17% Similarity=0.358 Sum_probs=23.3
Q ss_pred EEEecCcccEEEEeCCCCCCC---CCCeEEEEEec
Q 038631 106 AFRLDHPGPFYFISGASGHCE---KGQRMIIKVMY 137 (185)
Q Consensus 106 ~v~L~~~G~~YFiCgv~~HC~---~GmKl~I~V~~ 137 (185)
.+..+++|.+|..|+. -|. ..|++.|.|.+
T Consensus 183 ~~~~~~~G~~~g~C~e--~CG~~Hs~M~~~v~vv~ 215 (228)
T MTH00076 183 SFIASRPGVYYGQCSE--ICGANHSFMPIVVEATP 215 (228)
T ss_pred EEEeCCcEEEEEEChh--hcCccccCCceEEEEeC
Confidence 5567899999999986 444 45999888864
No 86
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=20.51 E-value=1.2e+02 Score=25.97 Aligned_cols=31 Identities=23% Similarity=0.385 Sum_probs=23.8
Q ss_pred EEEecCcccEEEEeCCCCCCCC---CCeEEEEEecC
Q 038631 106 AFRLDHPGPFYFISGASGHCEK---GQRMIIKVMYH 138 (185)
Q Consensus 106 ~v~L~~~G~~YFiCgv~~HC~~---GmKl~I~V~~~ 138 (185)
.++.+++|.+|..|+. -|.. -|++.|.|.+.
T Consensus 187 ~~~~~~~G~y~g~Cse--~CG~~Hs~M~i~v~vv~~ 220 (234)
T MTH00051 187 SFFIKRPGVFYGQCSE--ICGANHSFMPIVIEGVSL 220 (234)
T ss_pred EEEeCCCEEEEEEChh--hcCcccccCeeEEEEECH
Confidence 5677899999999986 5544 48888888753
No 87
>PF01345 DUF11: Domain of unknown function DUF11; InterPro: IPR001434 This group of sequences is represented by a conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis (Streptococcus faecalis), and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydia trachomatis outer membrane proteins. In C. trachomatis, three cysteine-rich proteins (also believed to be lipoproteins), MOMP, OMP6 and OMP3, make up the extracellular matrix of the outer membrane []. They are involved in the essential structural integrity of both the elementary body (EB) and recticulate body (RB) phase. They are thought to be involved in porin formation and, as these bacteria lack the peptidoglycan layer common to most Gram-negative microbes, such proteins are highly important in the pathogenicity of the organism.; GO: 0005727 extrachromosomal circular DNA
Probab=20.35 E-value=66 Score=21.89 Aligned_cols=22 Identities=14% Similarity=0.215 Sum_probs=18.7
Q ss_pred chhhhccCCeeeeccEeeEEee
Q 038631 55 IYNDWASENRFQVGDTIRFKYK 76 (185)
Q Consensus 55 ~Y~~Wa~~~tF~vGD~LvF~y~ 76 (185)
..++|+...+.++||.|+|...
T Consensus 27 ~~~k~~~~~~~~~Gd~v~ytit 48 (76)
T PF01345_consen 27 SITKTVNPSTANPGDTVTYTIT 48 (76)
T ss_pred EEEEecCCCcccCCCEEEEEEE
Confidence 4567888899999999998885
No 88
>KOG3342 consensus Signal peptidase I [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.14 E-value=35 Score=28.31 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=16.5
Q ss_pred CeeeeccEeeEEeeC------CcEEEE
Q 038631 63 NRFQVGDTIRFKYKK------DSVMEV 83 (185)
Q Consensus 63 ~tF~vGD~LvF~y~~------hsV~~V 83 (185)
..+++||.++|+.+. |.|+.+
T Consensus 76 ~p~~vGdivVf~vegR~IPiVHRviK~ 102 (180)
T KOG3342|consen 76 DPIRVGDIVVFKVEGREIPIVHRVIKQ 102 (180)
T ss_pred CcceeccEEEEEECCccCchhHHHHHH
Confidence 358999999999983 666654
Done!