Query 038631
Match_columns 185
No_of_seqs 171 out of 814
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 22:44:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038631.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038631hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jer_A Cucumber stellacyanin; 100.0 6.3E-43 2.2E-47 275.9 6.7 110 33-144 2-115 (138)
2 1ws8_A Mavicyanin; oxidized fo 100.0 4.5E-41 1.5E-45 255.6 7.6 105 33-140 1-107 (109)
3 1x9u_A Umecyanin; cupredoxin, 100.0 1E-40 3.5E-45 256.2 8.3 106 35-142 2-110 (116)
4 2cbp_A Cucumber basic protein; 100.0 2.4E-38 8.2E-43 235.5 6.9 94 35-136 1-96 (96)
5 1f56_A Plantacyanin; cupredoxi 100.0 4.8E-34 1.7E-38 210.5 8.3 89 35-136 1-91 (91)
6 1qhq_A Protein (auracyanin); e 99.2 1.6E-11 5.3E-16 94.2 6.6 94 32-136 14-139 (140)
7 1bxv_A Plastocyanin; copper pr 99.1 1E-10 3.5E-15 82.4 5.8 84 36-136 4-91 (91)
8 2cal_A Rusticyanin; iron respi 99.1 1.8E-10 6.1E-15 91.0 6.8 74 62-136 62-154 (154)
9 1pmy_A Pseudoazurin; electron 98.8 1.7E-08 5.7E-13 77.0 7.2 70 62-138 22-95 (123)
10 1paz_A Pseudoazurin precursor; 98.7 1.9E-08 6.6E-13 76.7 6.8 80 40-137 11-94 (123)
11 2gim_A Plastocyanin; beta shee 98.7 5.1E-08 1.7E-12 70.5 8.2 87 36-136 5-105 (106)
12 1iuz_A Plastocyanin; electron 98.7 1.7E-08 5.9E-13 72.7 5.6 88 36-136 3-98 (98)
13 1plc_A Plastocyanin; electron 98.7 4E-08 1.4E-12 70.5 7.0 87 37-136 3-99 (99)
14 2aan_A Auracyanin A; cupredoxi 98.7 1.2E-07 4.3E-12 72.3 10.2 92 33-136 17-139 (139)
15 3erx_A Pseudoazurin; copper pr 98.7 2.6E-08 8.9E-13 76.2 6.0 69 62-137 22-94 (123)
16 1kdj_A Plastocyanin; electron 98.6 6E-08 2.1E-12 69.8 6.5 87 37-136 3-102 (102)
17 1b3i_A PETE protein, protein ( 98.6 9.3E-08 3.2E-12 68.2 6.9 87 36-136 4-97 (97)
18 1byp_A Protein (plastocyanin); 98.6 1.2E-07 4.1E-12 67.9 7.1 87 37-136 3-99 (99)
19 3tu6_A Pseudoazurin (blue copp 98.6 8.5E-08 2.9E-12 73.8 6.3 71 62-139 24-98 (127)
20 3ef4_A Pseudoazurin, blue copp 98.5 2.1E-07 7.2E-12 71.4 7.2 81 39-137 10-95 (124)
21 2plt_A Plastocyanin; electron 98.5 1.6E-07 5.6E-12 66.9 5.9 89 35-136 2-98 (98)
22 1pcs_A Plastocyanin; electron 98.4 5E-07 1.7E-11 64.5 6.3 88 36-136 4-98 (98)
23 3c75_A Amicyanin; copper prote 98.0 1.5E-05 5.1E-10 60.9 6.7 66 62-136 61-132 (132)
24 3cvb_A Plastocyanin; cupredoxi 97.9 2.3E-05 7.7E-10 56.0 6.4 86 36-136 4-104 (105)
25 2ux6_A Pseudoazurin; type-1 co 97.8 3.3E-05 1.1E-09 58.5 5.7 67 62-137 22-92 (122)
26 4hci_A Cupredoxin 1; structura 97.8 1.5E-05 5.1E-10 57.4 3.3 64 62-136 29-100 (100)
27 3ay2_A Lipid modified azurin p 97.7 0.00014 4.8E-09 58.4 8.0 91 34-136 42-166 (167)
28 2ov0_A Amicyanin; beta-sandwic 97.6 9.9E-05 3.4E-09 53.6 5.2 82 33-136 17-105 (105)
29 1iko_P Ephrin-B2; greek KEY, g 97.5 2.8E-05 9.7E-10 63.3 1.8 76 65-140 26-143 (178)
30 1cuo_A Protein (azurin ISO-2); 97.5 0.00052 1.8E-08 52.5 8.7 25 111-136 104-128 (129)
31 1id2_A Amicyanin; beta barrel, 97.5 0.0002 6.7E-09 52.3 6.0 64 62-136 35-106 (106)
32 2iaa_C Azurin; quinoprotein, t 97.2 0.0036 1.2E-07 47.8 10.4 31 105-136 92-127 (128)
33 1nwp_A Azurin; electron transp 97.1 0.002 6.7E-08 49.3 8.0 31 105-136 93-128 (128)
34 2ccw_A Azurin II, AZN-2; elect 97.1 0.0032 1.1E-07 48.0 9.2 31 105-136 93-128 (129)
35 2x11_B Ephrin-A5; receptor-sig 96.9 0.002 6.7E-08 52.4 6.6 98 32-140 29-165 (177)
36 3czu_B Ephrin-A1; ATP-binding, 96.8 0.0015 5.1E-08 53.3 5.1 75 63-140 50-163 (182)
37 1iby_A Nitrosocyanin; RED copp 96.5 0.0062 2.1E-07 44.1 6.1 64 62-136 39-111 (112)
38 1shx_A Ephrin-A5; ephrin signa 96.3 0.0084 2.9E-07 46.8 6.2 74 63-139 23-135 (138)
39 3d12_B Ephrin-B3; beta propell 96.3 0.0055 1.9E-07 48.0 5.1 73 64-136 23-140 (141)
40 2cua_A Protein (CUA); CUA cent 95.7 0.021 7.2E-07 43.7 6.2 65 62-137 61-135 (135)
41 2wo3_B Ephrin-A2; transferase- 95.5 0.041 1.4E-06 43.8 7.2 74 63-139 32-145 (157)
42 2vsm_B Ephrin-B2; developmenta 94.7 0.021 7.3E-07 44.6 3.5 74 64-137 24-139 (140)
43 2dv6_A Nitrite reductase; elec 93.8 0.14 4.9E-06 45.1 7.2 75 62-140 56-135 (447)
44 1fwx_A Nitrous oxide reductase 90.7 0.26 8.8E-06 46.4 5.1 65 63-138 515-593 (595)
45 3s8f_B Cytochrome C oxidase su 90.4 0.69 2.3E-05 36.8 6.6 32 105-136 135-167 (168)
46 3fsa_A Azurin; copper, cupredo 90.2 4.3 0.00015 30.8 10.7 28 105-136 93-125 (125)
47 3hei_B Ephrin-A1; EPH receptor 89.8 0.37 1.3E-05 37.2 4.4 73 63-136 22-131 (132)
48 3sbq_A Nitrous-oxide reductase 86.2 0.71 2.4E-05 43.9 4.7 31 105-137 604-637 (638)
49 1mzy_A Copper-containing nitri 73.4 4.6 0.00016 34.1 5.2 74 63-139 66-154 (333)
50 1oe1_A Dissimilatory copper-co 72.8 3.2 0.00011 35.1 4.0 37 105-141 285-322 (336)
51 3gdc_A Multicopper oxidase; be 68.4 7.5 0.00026 32.3 5.3 78 63-140 68-157 (288)
52 1oe1_A Dissimilatory copper-co 68.0 7.2 0.00025 32.8 5.2 74 63-139 67-154 (336)
53 3cg8_A Laccase; oxidoreductase 65.6 10 0.00035 32.5 5.7 32 110-141 279-310 (343)
54 1yel_A AT1G16640; CESG, protei 63.3 2.6 8.8E-05 30.1 1.3 24 60-83 73-96 (104)
55 1mzy_A Copper-containing nitri 58.0 8.9 0.0003 32.3 3.9 34 106-139 286-320 (333)
56 1kbv_A ANIA, major outer membr 56.4 9.3 0.00032 32.3 3.8 34 106-139 122-158 (327)
57 2zwn_A Two-domain type laccase 52.2 16 0.00056 30.9 4.7 35 105-139 91-128 (339)
58 2zoo_A Probable nitrite reduct 49.7 9.1 0.00031 33.4 2.7 34 106-139 112-148 (442)
59 1cyx_A CYOA; electron transpor 48.2 17 0.00059 29.6 4.0 63 63-136 43-115 (205)
60 2bw4_A Copper-containing nitri 47.4 17 0.00059 30.5 4.1 74 63-139 73-160 (340)
61 1fft_B Ubiquinol oxidase; elec 47.4 47 0.0016 28.6 6.8 64 62-136 152-225 (315)
62 1sdd_A Coagulation factor V; c 46.4 2.8 9.5E-05 35.3 -1.1 32 106-137 269-300 (306)
63 3hb3_B Cytochrome C oxidase su 45.6 17 0.00059 31.2 3.7 33 105-139 231-266 (298)
64 3kw8_A Laccase, putative coppe 45.6 13 0.00046 30.5 3.0 31 111-141 239-269 (276)
65 3gdc_A Multicopper oxidase; be 44.9 8 0.00027 32.1 1.5 32 106-137 257-288 (288)
66 2gsm_B Cytochrome C oxidase su 43.9 19 0.00066 30.1 3.7 32 105-138 213-247 (262)
67 2bw4_A Copper-containing nitri 42.9 22 0.00076 29.8 4.0 35 106-140 292-327 (340)
68 1v54_B Cytochrome C oxidase po 42.4 18 0.00063 29.6 3.3 30 106-137 183-215 (227)
69 3l6w_A Hemocyanin 1; cupredoxi 39.1 36 0.0012 31.4 5.0 71 63-136 413-491 (491)
70 1kbv_A ANIA, major outer membr 37.5 20 0.0007 30.1 2.9 34 106-139 275-309 (327)
71 3g5w_A Multicopper oxidase typ 36.1 22 0.00074 30.0 2.9 79 64-142 37-130 (318)
72 3iuw_A Activating signal coint 35.8 13 0.00045 26.3 1.2 14 63-76 36-50 (83)
73 2vb2_X Copper protein, cation 34.3 22 0.00075 24.9 2.2 20 58-77 55-74 (88)
74 2qcp_X Cation efflux system pr 34.1 22 0.00077 24.4 2.2 16 62-77 51-66 (80)
75 4i1k_A B3 domain-containing tr 33.0 17 0.00058 27.7 1.6 24 60-83 112-137 (146)
76 3t9w_A Small laccase, multi-co 32.8 18 0.00062 30.2 1.8 32 110-141 260-291 (299)
77 1zpu_A Iron transport multicop 31.2 61 0.0021 29.3 5.2 35 105-139 91-126 (534)
78 2k75_A Uncharacterized protein 28.6 26 0.00088 25.0 1.8 30 36-75 41-70 (106)
79 3sqr_A Laccase; multicopper ox 27.9 84 0.0029 29.0 5.6 34 105-138 155-188 (580)
80 2ls0_1 Zoocin A endopeptidase; 27.7 60 0.0021 24.6 3.7 46 62-121 72-120 (128)
81 2q9o_A Laccase-1; multicopper 27.3 74 0.0025 28.9 5.1 34 105-138 125-158 (559)
82 2zoo_A Probable nitrite reduct 27.0 45 0.0015 28.9 3.4 35 106-140 265-300 (442)
83 2l55_A SILB,silver efflux prot 26.9 32 0.0011 23.7 2.0 19 59-77 42-60 (82)
84 2j5w_A Ceruloplasmin, ferroxid 26.8 66 0.0023 31.8 4.9 74 62-139 633-719 (1065)
85 1aoz_A Ascorbate oxidase; oxid 26.5 96 0.0033 28.0 5.6 35 105-139 91-125 (552)
86 2j5w_A Ceruloplasmin, ferroxid 25.4 43 0.0015 33.1 3.3 75 63-141 273-360 (1065)
87 1xne_A Hypothetical protein PF 25.3 16 0.00055 27.1 0.2 13 63-75 33-45 (113)
88 1sdd_B Coagulation factor V; c 24.5 35 0.0012 31.4 2.3 32 106-137 296-327 (647)
89 2dv6_A Nitrite reductase; elec 24.3 53 0.0018 28.4 3.4 34 106-139 402-435 (447)
90 1wx7_A Ubiquilin 3; ubiquitin- 22.5 95 0.0033 21.5 3.9 28 126-153 78-105 (106)
91 3kw8_A Laccase, putative coppe 22.4 1E+02 0.0034 25.1 4.5 30 112-141 109-144 (276)
92 3tas_A Small laccase, multi-co 21.8 1.5E+02 0.0053 24.5 5.7 79 64-143 45-152 (313)
93 4he6_A Peptidase family U32; u 21.2 31 0.0011 23.6 1.0 17 61-77 26-42 (89)
94 2hzs_I RNA polymerase II media 20.1 3.3 0.00011 23.1 -3.4 16 62-77 4-19 (27)
No 1
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1
Probab=100.00 E-value=6.3e-43 Score=275.92 Aligned_cols=110 Identities=28% Similarity=0.596 Sum_probs=99.2
Q ss_pred eeEEEEEeCCCCCCCCCCCCCcchhhhccCCeeeeccEeeEEeeC--CcEEEE-cccccCCCCCCCCceeeCCCCeEEEe
Q 038631 33 HSLEFQVGGNRGWVVPPANDSKIYNDWASENRFQVGDTIRFKYKK--DSVMEV-TDKEYKKCNSTHPIFFSNTGNTAFRL 109 (185)
Q Consensus 33 ~A~~~~VGg~~GW~~p~~~~~~~Y~~Wa~~~tF~vGD~LvF~y~~--hsV~~V-~~~~Y~~C~~s~pi~~~~~G~~~v~L 109 (185)
+|++|+|||+.||+++++ ..+|++||++|+|+|||+|+|+|.+ |+|+|| ++++|+.|+.++++..+++|+++|+|
T Consensus 2 ~a~~~~VGg~~GW~~~~~--~~~Y~~Wa~~~~F~vGD~LvF~y~~~~HsV~~V~~~~~y~~C~~s~p~~~~~~G~~~v~L 79 (138)
T 1jer_A 2 QSTVHIVGDNTGWSVPSS--PNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNFVNSDNDVERTSPVIER 79 (138)
T ss_dssp CCCEEETTGGGCSSCCSS--TTHHHHHHHTCCEETTCEEEECCCTTTCCCEEESCHHHHHHTCCTTSCCCCCCCSCEEEE
T ss_pred CceEEEECCcCcCcCCCC--ccchhhhhcCCcCcCCCEEEEeecCCCceEEEeCchhhcCccCCCCccccccCCCeEEEe
Confidence 578999999999999753 4689999999999999999999985 999999 99999999999999999999999999
Q ss_pred -cCcccEEEEeCCCCCCCCCCeEEEEEecCCCCCCC
Q 038631 110 -DHPGPFYFISGASGHCEKGQRMIIKVMYHEESSPS 144 (185)
Q Consensus 110 -~~~G~~YFiCgv~~HC~~GmKl~I~V~~~~~p~~s 144 (185)
+++|++||||++++||++||||+|+|....+++++
T Consensus 80 ~~~~G~~YFicg~~gHC~~GmKl~I~V~~~~~~~~~ 115 (138)
T 1jer_A 80 LDELGMHYFVCTVGTHCSNGQKLSINVVAANATVSM 115 (138)
T ss_dssp CCSSEEEEEECCSTTTGGGTCEEEEEEECCC-----
T ss_pred ccCCcCEEEEcCCCCccccCCEEEEEEcCCCCCCCC
Confidence 99999999999999999999999999987764433
No 2
>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A
Probab=100.00 E-value=4.5e-41 Score=255.60 Aligned_cols=105 Identities=36% Similarity=0.752 Sum_probs=96.5
Q ss_pred eeEEEEEeCCCCCCCCCCCCCcchhhhccCCeeeeccEeeEEeeC--CcEEEEcccccCCCCCCCCceeeCCCCeEEEec
Q 038631 33 HSLEFQVGGNRGWVVPPANDSKIYNDWASENRFQVGDTIRFKYKK--DSVMEVTDKEYKKCNSTHPIFFSNTGNTAFRLD 110 (185)
Q Consensus 33 ~A~~~~VGg~~GW~~p~~~~~~~Y~~Wa~~~tF~vGD~LvF~y~~--hsV~~V~~~~Y~~C~~s~pi~~~~~G~~~v~L~ 110 (185)
+|++|+|||+.||++++ ..+|++||++++|+|||+|+|+|.+ |+|+||++++|+.|+.++|+..+++|+++|+|+
T Consensus 1 ~a~~~~VG~~~GW~~~~---~~~Y~~Wa~~~~F~vGD~LvF~y~~~~hsV~~V~~~~y~~C~~~~p~~~~~~G~~~v~L~ 77 (109)
T 1ws8_A 1 MATVHKVGDSTGWTTLV---PYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSSSPAASYTSGADSIPLK 77 (109)
T ss_dssp CCCEEETTGGGCSCSSS---CCCHHHHHHTSCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCSSCSEEECSSEEEEECC
T ss_pred CCcEEEeCCCCCccCCC---CcChhHhhcCCcCcCCCEEEEeecCCCceEEEEChHHCCcccCCCcccccCCCCEEEEEC
Confidence 47899999999999864 4589999999999999999999985 999999999999999999999999999999999
Q ss_pred CcccEEEEeCCCCCCCCCCeEEEEEecCCC
Q 038631 111 HPGPFYFISGASGHCEKGQRMIIKVMYHEE 140 (185)
Q Consensus 111 ~~G~~YFiCgv~~HC~~GmKl~I~V~~~~~ 140 (185)
++|++||||++++||++||||+|+|.++++
T Consensus 78 ~~G~~yFic~~~gHC~~GmKl~I~V~~~~s 107 (109)
T 1ws8_A 78 RPGTFYFLCGIPGHCQLGQKVEIKVDPGSS 107 (109)
T ss_dssp SSEEEEEECCSTTTTTTTCEEEEEECC---
T ss_pred CCcCEEEECCCCCcccCCCEEEEEEcCCCC
Confidence 999999999999999999999999975543
No 3
>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A
Probab=100.00 E-value=1e-40 Score=256.24 Aligned_cols=106 Identities=31% Similarity=0.655 Sum_probs=94.9
Q ss_pred EEEEEeCCCCCCCCCCCCCcchhhhccCCeeeeccEeeEEeeC--CcEEEEcccccCCCCCCCCceeeCCCCeEEEecCc
Q 038631 35 LEFQVGGNRGWVVPPANDSKIYNDWASENRFQVGDTIRFKYKK--DSVMEVTDKEYKKCNSTHPIFFSNTGNTAFRLDHP 112 (185)
Q Consensus 35 ~~~~VGg~~GW~~p~~~~~~~Y~~Wa~~~tF~vGD~LvF~y~~--hsV~~V~~~~Y~~C~~s~pi~~~~~G~~~v~L~~~ 112 (185)
++|+|||+.||+++. +..+|++|+++++|++||+|+|+|.+ |+|+||++++|+.|+.++|+..+++|+++|+|+++
T Consensus 2 ~~~~VG~~~GW~~~~--~~~~Y~~Wa~~~~f~vGD~L~F~y~~~~HsV~~V~~~~y~~C~~~~~~~~~~~G~~~v~l~~~ 79 (116)
T 1x9u_A 2 EDYDVGGDMEWKRPS--DPKFYITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKKENPISHMTTPPVKIMLNTT 79 (116)
T ss_dssp CEEETTGGGCSSCCS--STTHHHHHHTTCCEETTCEEEECCCTTTCCEEEECHHHHHTTCCSSCSEEECSSSEEEECCSC
T ss_pred eEEEECCcCcCcCCC--CCcchhhccccccCcCCCEEEEEecCCCCeEEEEChhhcCccCCCCCccccCCCCeEEEECCC
Confidence 479999999999863 25689999999999999999999985 99999999999999999999999999999999999
Q ss_pred ccEEEEeCCCCCCCCCCeEEE-EEecCCCCC
Q 038631 113 GPFYFISGASGHCEKGQRMII-KVMYHEESS 142 (185)
Q Consensus 113 G~~YFiCgv~~HC~~GmKl~I-~V~~~~~p~ 142 (185)
|++||||++++||++||||+| +|.++++++
T Consensus 80 G~~yFic~~~~HC~~Gmkl~In~V~~~~~~~ 110 (116)
T 1x9u_A 80 GPQYYICTVGDHCRVGQKLSINVVGAGGAGG 110 (116)
T ss_dssp EEEEEECCSTTTTTTTCEEEEEEECC-----
T ss_pred CCEEEECCCCCccccCCEEEEEEECCCCCCC
Confidence 999999999999999999999 887665543
No 4
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1
Probab=100.00 E-value=2.4e-38 Score=235.51 Aligned_cols=94 Identities=28% Similarity=0.671 Sum_probs=89.7
Q ss_pred EEEEEeCCCCCCCCCCCCCcchhhhccCCeeeeccEeeEEeeC--CcEEEEcccccCCCCCCCCceeeCCCCeEEEecCc
Q 038631 35 LEFQVGGNRGWVVPPANDSKIYNDWASENRFQVGDTIRFKYKK--DSVMEVTDKEYKKCNSTHPIFFSNTGNTAFRLDHP 112 (185)
Q Consensus 35 ~~~~VGg~~GW~~p~~~~~~~Y~~Wa~~~tF~vGD~LvF~y~~--hsV~~V~~~~Y~~C~~s~pi~~~~~G~~~v~L~~~ 112 (185)
++|+|||+.||++ +|++|+++++|++||+|+|+|.+ |+|+||++++|+.|+.++|+..+++|+++|+| ++
T Consensus 1 ~~~~VG~~~GW~~-------~y~~Wa~~~~f~vGD~L~F~y~~~~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~L-~~ 72 (96)
T 2cbp_A 1 AVYVVGGSGGWTF-------NTESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPAGAKVYTSGRDQIKL-PK 72 (96)
T ss_dssp CEEETTGGGCSCS-------SCTTTTTTCCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCCTTCEEECSSEEEEEC-CS
T ss_pred CEEEECCcCCCcc-------ChhhhccCceEcCCCEEEEEecCCCCEEEEECHHHCCccCCCCCcccccCCCeEEEe-cC
Confidence 4799999999997 49999999999999999999985 99999999999999999999999999999999 89
Q ss_pred ccEEEEeCCCCCCCCCCeEEEEEe
Q 038631 113 GPFYFISGASGHCEKGQRMIIKVM 136 (185)
Q Consensus 113 G~~YFiCgv~~HC~~GmKl~I~V~ 136 (185)
|++||||++++||++||||+|+|+
T Consensus 73 g~~yFic~~~~HC~~Gmkl~I~Vl 96 (96)
T 2cbp_A 73 GQSYFICNFPGHCQSGMKIAVNAL 96 (96)
T ss_dssp EEEEEECCSTTTGGGTCEEEEEEC
T ss_pred CCEEEEcCCCCccccCCEEEEEEC
Confidence 999999999999999999999985
No 5
>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1
Probab=100.00 E-value=4.8e-34 Score=210.53 Aligned_cols=89 Identities=28% Similarity=0.596 Sum_probs=83.5
Q ss_pred EEEEEeCCCCCCCCCCCCCcchhhhccCCeeeeccEeeEEeeC--CcEEEEcccccCCCCCCCCceeeCCCCeEEEecCc
Q 038631 35 LEFQVGGNRGWVVPPANDSKIYNDWASENRFQVGDTIRFKYKK--DSVMEVTDKEYKKCNSTHPIFFSNTGNTAFRLDHP 112 (185)
Q Consensus 35 ~~~~VGg~~GW~~p~~~~~~~Y~~Wa~~~tF~vGD~LvF~y~~--hsV~~V~~~~Y~~C~~s~pi~~~~~G~~~v~L~~~ 112 (185)
++|+| ||+++ ++|+++++|++||+|+|+|.+ |+|+||++++|+.|+.++|+..+++|+++|+|+ +
T Consensus 1 ~~y~V----gW~~~--------~~Wa~~~~f~vGD~L~F~y~~~~hsV~~v~~~~y~~C~~~~~~~~~~~G~~~v~L~-~ 67 (91)
T 1f56_A 1 AVYNI----GWSFN--------VNGARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTYSSGQDRIKLT-R 67 (91)
T ss_dssp CEEEE----ECSSS--------CBSCTTCCBCTTCEEEEECCBTTBCEEEECHHHHHTTCCCTTCEEECSSEEEEECC-S
T ss_pred CEEEE----eCCCC--------CcCcCCccEeCCCEEEEEccCCCCeEEEECHHHcCCcCCCCCcccccCCCcEEEeC-C
Confidence 46889 79972 799999999999999999985 999999999999999999999999999999996 8
Q ss_pred ccEEEEeCCCCCCCCCCeEEEEEe
Q 038631 113 GPFYFISGASGHCEKGQRMIIKVM 136 (185)
Q Consensus 113 G~~YFiCgv~~HC~~GmKl~I~V~ 136 (185)
|++||||++++||++||||+|+|.
T Consensus 68 g~~yFic~~~~HC~~Gmkl~I~v~ 91 (91)
T 1f56_A 68 GQNYFICSFPGHCGGGMKIAINAK 91 (91)
T ss_dssp EEEEEECCSTTTTTTTCEEEEEEC
T ss_pred CCeEEEcCCCCccccCCEEEEEEC
Confidence 999999999999999999999984
No 6
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A
Probab=99.22 E-value=1.6e-11 Score=94.23 Aligned_cols=94 Identities=14% Similarity=0.295 Sum_probs=63.5
Q ss_pred eeeEEEEEeCC-CCCCCCCCCCCcchhhhccCCeeeeccEeeEEeeC-------CcEEEEccc-ccCCC-----------
Q 038631 32 VHSLEFQVGGN-RGWVVPPANDSKIYNDWASENRFQVGDTIRFKYKK-------DSVMEVTDK-EYKKC----------- 91 (185)
Q Consensus 32 a~A~~~~VGg~-~GW~~p~~~~~~~Y~~Wa~~~tF~vGD~LvF~y~~-------hsV~~V~~~-~Y~~C----------- 91 (185)
+..+++.|+-. .+|.+.|. ..+++.||++.|.+.+ |++...+.. ++..+
T Consensus 14 ~~~~~v~V~~~~~~~~F~P~-----------~i~v~~G~tV~~~~~N~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (140)
T 1qhq_A 14 TPAQTVEVRAAPDALAFAQT-----------SLSLPANTVVRLDFVNQNNLGVQHNWVLVNGGDDVAAAVNTAAQNNADA 82 (140)
T ss_dssp CCSEEEEEEBCSSSSSBSCS-----------EEEEETTCEEEEEEEECCSSCCCBCCEEESSSHHHHHHHHHHHHTCGGG
T ss_pred CCCEEEEEEEeCCCceEeCC-----------eEEECCCCEEEEEEECCCCCCCceeEEEeccCcchhhhhhhhhhhcccc
Confidence 44567777764 35888552 4689999999988853 788776321 11110
Q ss_pred ------CCCC------CceeeCCCCeEEEecCcccEEEEeCCCCCCCCCCeEEEEEe
Q 038631 92 ------NSTH------PIFFSNTGNTAFRLDHPGPFYFISGASGHCEKGQRMIIKVM 136 (185)
Q Consensus 92 ------~~s~------pi~~~~~G~~~v~L~~~G~~YFiCgv~~HC~~GmKl~I~V~ 136 (185)
+..+ .+....++..+|+++++|.|||+|++++||+.|||..|+|.
T Consensus 83 ~~~~~~~~~~~~~~t~~l~pG~~~~~~~~~~~~G~y~f~C~~~~H~~~GM~g~i~V~ 139 (140)
T 1qhq_A 83 LFVPPPDTPNALAWTAMLNAGESGSVTFRTPAPGTYLYICTFPGHYLAGMKGTLTVT 139 (140)
T ss_dssp TTCCCTTCTTEEEECCCBCTTEEEEEEEECCSSEEEEEECCSTTTTTTTCEEEEEEE
T ss_pred cccCccccccccccceeeCCCceeEEEEEeCCCeeEEEEeCCcCHhhcCCEEEEEEc
Confidence 0001 11112234457888899999999999999999999999996
No 7
>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A
Probab=99.10 E-value=1e-10 Score=82.45 Aligned_cols=84 Identities=20% Similarity=0.304 Sum_probs=58.9
Q ss_pred EEEEeCC-CCCCCCCCCCCcchhhhccCCeeeeccEeeEEeeC---CcEEEEcccccCCCCCCCCceeeCCCCeEEEecC
Q 038631 36 EFQVGGN-RGWVVPPANDSKIYNDWASENRFQVGDTIRFKYKK---DSVMEVTDKEYKKCNSTHPIFFSNTGNTAFRLDH 111 (185)
Q Consensus 36 ~~~VGg~-~GW~~p~~~~~~~Y~~Wa~~~tF~vGD~LvF~y~~---hsV~~V~~~~Y~~C~~s~pi~~~~~G~~~v~L~~ 111 (185)
+..+|++ .+|.+.|+ ..++++||+++|++.. |+|.......+. ........+...++++++
T Consensus 4 ~v~~~~~~~~~~f~P~-----------~i~v~~Gd~V~~~n~~~~~H~v~~~~~~~~~----~~~~~~~~g~~~~~~f~~ 68 (91)
T 1bxv_A 4 AIKMGADNGMLAFEPS-----------TIEIQAGDTVQWVNNKLAPHNVVVEGQPELS----HKDLAFSPGETFEATFSE 68 (91)
T ss_dssp EEEESCTTSCSSEESS-----------EEEECTTCEEEEEECSSCCEEEEETTCGGGC----EEEEECSTTCEEEEECCS
T ss_pred EEEEecCCCccEEeCC-----------EEEECCCCEEEEEECCCCCcEEEEeCCCccC----cccceeCCCCEEEEEeCC
Confidence 4556764 46777553 3689999999999863 788765432221 011112223356889999
Q ss_pred cccEEEEeCCCCCCCCCCeEEEEEe
Q 038631 112 PGPFYFISGASGHCEKGQRMIIKVM 136 (185)
Q Consensus 112 ~G~~YFiCgv~~HC~~GmKl~I~V~ 136 (185)
||.++|+|. .||..||+..|.|.
T Consensus 69 ~G~y~~~C~--~H~~~gM~g~i~V~ 91 (91)
T 1bxv_A 69 PGTYTYYCE--PHRGAGMVGKIVVQ 91 (91)
T ss_dssp CEEEEEECT--TTGGGTCEEEEEEC
T ss_pred CEEEEEEeC--CCccCCCEEEEEEC
Confidence 999999999 89999999999984
No 8
>2cal_A Rusticyanin; iron respiratory electron transport chain, blue protein, electron transport, metal- binding, periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A
Probab=99.08 E-value=1.8e-10 Score=91.01 Aligned_cols=74 Identities=19% Similarity=0.303 Sum_probs=57.2
Q ss_pred CCeeeeccEeeEEeeC------CcEEEEc-ccccCCCCCCCCceee-------CCC---Ce--EEEecCcccEEEEeCCC
Q 038631 62 ENRFQVGDTIRFKYKK------DSVMEVT-DKEYKKCNSTHPIFFS-------NTG---NT--AFRLDHPGPFYFISGAS 122 (185)
Q Consensus 62 ~~tF~vGD~LvF~y~~------hsV~~V~-~~~Y~~C~~s~pi~~~-------~~G---~~--~v~L~~~G~~YFiCgv~ 122 (185)
..++++||+++|++.+ |++..++ ...|+.|....++... ..| .. +|++ ++|.|||+|+++
T Consensus 62 ~i~V~~GD~V~~~~tN~~~~~~H~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~PG~sgt~t~tft~-~pGtY~y~C~~~ 140 (154)
T 2cal_A 62 TLEIPAGATVDVTFINTNKGFGHSFDITKKGPPYAVMPVIDPIVAGTGFSPVPKDGKFGYTDFTWHP-TAGTYYYVCQIP 140 (154)
T ss_dssp EEEECTTCEEEEEEEECCTTCCCCCEEESCCSCCCSSCCCCSEEEEBCCCCCCBTTBEEEEEEEECC-CSEEEEEECCST
T ss_pred EEEEeCCCEEEEEEEcCCCCeeeEEEEeecCcchhccccccccccccccccccCCCCceEEEEEEEE-CCceEEEECCCC
Confidence 3588999999999953 8988884 5678888765544322 122 33 5678 999999999999
Q ss_pred CCCCCCCeEEEEEe
Q 038631 123 GHCEKGQRMIIKVM 136 (185)
Q Consensus 123 ~HC~~GmKl~I~V~ 136 (185)
+||+.|||..|.|.
T Consensus 141 gH~~~GM~G~IiV~ 154 (154)
T 2cal_A 141 GMAATGMFGKIVVK 154 (154)
T ss_dssp TTGGGTCEEEEEEC
T ss_pred CHHHCCCEEEEEEC
Confidence 99999999999884
No 9
>1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} SCOP: b.6.1.1
Probab=98.76 E-value=1.7e-08 Score=77.05 Aligned_cols=70 Identities=17% Similarity=0.234 Sum_probs=50.8
Q ss_pred CCeeeeccEeeEEeeC--CcEEEEcccccCCCCCCCC--ceeeCCCCeEEEecCcccEEEEeCCCCCCCCCCeEEEEEec
Q 038631 62 ENRFQVGDTIRFKYKK--DSVMEVTDKEYKKCNSTHP--IFFSNTGNTAFRLDHPGPFYFISGASGHCEKGQRMIIKVMY 137 (185)
Q Consensus 62 ~~tF~vGD~LvF~y~~--hsV~~V~~~~Y~~C~~s~p--i~~~~~G~~~v~L~~~G~~YFiCgv~~HC~~GmKl~I~V~~ 137 (185)
..++++||++.|.+.. |+|.... .|.+.+. .....+...+++++++|.|+|+|+ .||..||+..|+|.+
T Consensus 22 ~i~V~~GdtV~f~n~~~~H~v~~~~-----~~~p~~~~~~~~~pG~t~~~tF~~~G~y~y~C~--~H~~~gM~G~I~V~~ 94 (123)
T 1pmy_A 22 LVRLKPGDSIKFLPTDKGHNVETIK-----GMAPDGADYVKTTVGQEAVVKFDKEGVYGFKCA--PHYMMGMVALVVVGD 94 (123)
T ss_dssp EEEECTTCEEEEECSSSSCCCEECT-----TSSCTTCCCCBCCTTSCEEEECCSCEEEEEECS--TTTTTTCEEEEEESS
T ss_pred EEEECCCCEEEEEECCCCcEEEEec-----ccCCCCccceecCCCCEEEEEeCCCeEEEEEeC--CccccCCEEEEEEcC
Confidence 3689999999999874 9987642 2222221 111122345889999999999998 499999999999974
Q ss_pred C
Q 038631 138 H 138 (185)
Q Consensus 138 ~ 138 (185)
+
T Consensus 95 ~ 95 (123)
T 1pmy_A 95 K 95 (123)
T ss_dssp C
T ss_pred C
Confidence 3
No 10
>1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} SCOP: b.6.1.1 PDB: 1pza_A 1pzb_A 1pzc_A 2p80_D 3nyk_A 3paz_A 8paz_A 4paz_A 5paz_A 6paz_A 7paz_A 1py0_A*
Probab=98.73 E-value=1.9e-08 Score=76.68 Aligned_cols=80 Identities=21% Similarity=0.250 Sum_probs=56.0
Q ss_pred eCCCCCCCCCCCCCcchhhhccCCeeeeccEeeEEeeC--CcEEEEcccccCCCCCCCC--ceeeCCCCeEEEecCcccE
Q 038631 40 GGNRGWVVPPANDSKIYNDWASENRFQVGDTIRFKYKK--DSVMEVTDKEYKKCNSTHP--IFFSNTGNTAFRLDHPGPF 115 (185)
Q Consensus 40 Gg~~GW~~p~~~~~~~Y~~Wa~~~tF~vGD~LvF~y~~--hsV~~V~~~~Y~~C~~s~p--i~~~~~G~~~v~L~~~G~~ 115 (185)
|++.++.+.|. ..++++||++.|.+.. |+|... +.|.+.+. .....+...+++++++|.|
T Consensus 11 g~~g~~~F~P~-----------~i~V~~GdtV~f~~~~~~H~v~~~-----~~~~p~~~~~~~~~pG~t~~~tF~~~G~y 74 (123)
T 1paz_A 11 GAEGAMVFEPA-----------YIKANPGDTVTFIPVDKGHNVESI-----KDMIPEGAEKFKSKINENYVLTVTQPGAY 74 (123)
T ss_dssp ETTEEEEEESS-----------EEEECTTCEEEEEESSSSCCCEEC-----TTCSCTTCCCCBCCTTCCEEEECCSCEEE
T ss_pred cCCCCceEeCC-----------EEEECCCCEEEEEECCCCeEEEEe-----cccCCCCccceecCCCCEEEEEeCCCEEE
Confidence 55545666442 3689999999999975 998753 12322211 1111222458899999999
Q ss_pred EEEeCCCCCCCCCCeEEEEEec
Q 038631 116 YFISGASGHCEKGQRMIIKVMY 137 (185)
Q Consensus 116 YFiCgv~~HC~~GmKl~I~V~~ 137 (185)
+|+|+ .||+.||+..|+|.+
T Consensus 75 ~y~C~--~H~~~gM~G~I~V~~ 94 (123)
T 1paz_A 75 LVKCT--PHYAMGMIALIAVGD 94 (123)
T ss_dssp EEECT--TTGGGTCEEEEEESS
T ss_pred EEEeC--CcccCCCEEEEEEcC
Confidence 99998 599999999999974
No 11
>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A
Probab=98.71 E-value=5.1e-08 Score=70.53 Aligned_cols=87 Identities=21% Similarity=0.256 Sum_probs=57.4
Q ss_pred EEEEeCC-CCCCCCCCCCCcchhhhccCCeeeeccEeeEEeeC---CcEEEEcccccC-----C--CCCCCCceeeCCCC
Q 038631 36 EFQVGGN-RGWVVPPANDSKIYNDWASENRFQVGDTIRFKYKK---DSVMEVTDKEYK-----K--CNSTHPIFFSNTGN 104 (185)
Q Consensus 36 ~~~VGg~-~GW~~p~~~~~~~Y~~Wa~~~tF~vGD~LvF~y~~---hsV~~V~~~~Y~-----~--C~~s~pi~~~~~G~ 104 (185)
+..+|.+ .++.+.|+ ..++++||++.|.+.. |++...+....+ . +.. +......+..
T Consensus 5 ~V~~~~~~~~~~F~P~-----------~i~v~~Gd~V~~~n~~~~~H~~~~~~~~~~~~~g~~~~~~~~-~~~~~~pG~~ 72 (106)
T 2gim_A 5 TVKLGSDKGLLVFEPA-----------KLTIKPGDTVEFLNNKVPPHNVVFDAALNPAKSADLAKSLSH-KQLLMSPGQS 72 (106)
T ss_dssp EEEESCTTCCSSEESS-----------EEEECTTCEEEEEECSSSCCCBEECSSSSTTCCHHHHHHHCB-CSCCCSTTCE
T ss_pred EEEEEecCCcceEcCC-----------EEEECCCCEEEEEECCCCCceEEEeCCCCcccccccchhccc-cceeeCCCCE
Confidence 4556653 56777542 3589999999999763 888754321100 0 000 1111222334
Q ss_pred eEEEe---cCcccEEEEeCCCCCCCCCCeEEEEEe
Q 038631 105 TAFRL---DHPGPFYFISGASGHCEKGQRMIIKVM 136 (185)
Q Consensus 105 ~~v~L---~~~G~~YFiCgv~~HC~~GmKl~I~V~ 136 (185)
.++++ ++||.|+|+|. .||+.||+..|.|.
T Consensus 73 ~~~~f~~~~~~G~y~y~C~--~H~~~GM~G~i~V~ 105 (106)
T 2gim_A 73 TSTTFPADAPAGEYTFYCE--PHRGAGMVGKITVA 105 (106)
T ss_dssp EEEECCTTCCSEEEEEECT--TTGGGTCEEEEEEC
T ss_pred EEEEEecCCCCceEEEEeC--ChhhcCcEEEEEEc
Confidence 57888 89999999999 89999999999985
No 12
>1iuz_A Plastocyanin; electron transport; 1.60A {Ulva pertusa} SCOP: b.6.1.1 PDB: 7pcy_A
Probab=98.71 E-value=1.7e-08 Score=72.74 Aligned_cols=88 Identities=18% Similarity=0.327 Sum_probs=57.8
Q ss_pred EEEEeC-CCCCCCCCCCCCcchhhhccCCeeeeccEeeEEeeC---CcEEEEcc---cccCCCCCCCCceeeCCC-CeEE
Q 038631 36 EFQVGG-NRGWVVPPANDSKIYNDWASENRFQVGDTIRFKYKK---DSVMEVTD---KEYKKCNSTHPIFFSNTG-NTAF 107 (185)
Q Consensus 36 ~~~VGg-~~GW~~p~~~~~~~Y~~Wa~~~tF~vGD~LvF~y~~---hsV~~V~~---~~Y~~C~~s~pi~~~~~G-~~~v 107 (185)
+..+|+ +.++.+.|. ..++++||++.|.... |+|...+. +.++.+..+........| ..++
T Consensus 3 ~V~m~~~~~~~~F~P~-----------~i~v~~GdtV~~~n~~~~~H~v~~~~~~~p~g~~~~~~~~~~~~~~~g~~~~~ 71 (98)
T 1iuz_A 3 IVKLGGDDGSLAFVPS-----------KISVAAGEAIEFVNNAGFPHNIVFDEDAVPAGVDADAISYDDYLNSKGETVVR 71 (98)
T ss_dssp EEEESCTTSCCSEESS-----------EEEECTTCEEEEEECSSCCEEEEECTTSSCTTCCHHHHCEEEEECSTTCEEEE
T ss_pred EEEEecCCCCcEEeCC-----------EEEECCCCEEEEEECCCCCEEEEEeCCCCccccccccccccccccCCCCEEEE
Confidence 445554 346777552 3689999999998763 88875431 112222111111122334 3578
Q ss_pred EecCcccEEEEeCCCCCCCCCCeEEEEEe
Q 038631 108 RLDHPGPFYFISGASGHCEKGQRMIIKVM 136 (185)
Q Consensus 108 ~L~~~G~~YFiCgv~~HC~~GmKl~I~V~ 136 (185)
+++++|.|+|+|.. ||+.||+..|.|.
T Consensus 72 tf~~~G~y~y~C~~--H~~~gM~G~I~V~ 98 (98)
T 1iuz_A 72 KLSTPGVYGVYCEP--HAGAGMKMTITVQ 98 (98)
T ss_dssp ECCSCEEEEEECTT--TGGGTCEEEEEEC
T ss_pred EcCCCEEEEEEchh--hccCCCEEEEEEC
Confidence 89999999999995 9999999999984
No 13
>1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} SCOP: b.6.1.1 PDB: 1pnc_A 1pnd_A 1tkw_A* 2pcy_A 3pcy_A 4pcy_A 5pcy_A 6pcy_A 1jxg_A 1ag6_A 1ylb_B 2pcf_A* 1oow_A 1tef_A 9pcy_A 1teg_A 1byo_A
Probab=98.69 E-value=4e-08 Score=70.52 Aligned_cols=87 Identities=16% Similarity=0.233 Sum_probs=57.2
Q ss_pred EEEeCC-CCCCCCCCCCCcchhhhccCCeeeeccEeeEEeeC---CcEEEEccc---ccCCCCC---CCCceeeCCCCeE
Q 038631 37 FQVGGN-RGWVVPPANDSKIYNDWASENRFQVGDTIRFKYKK---DSVMEVTDK---EYKKCNS---THPIFFSNTGNTA 106 (185)
Q Consensus 37 ~~VGg~-~GW~~p~~~~~~~Y~~Wa~~~tF~vGD~LvF~y~~---hsV~~V~~~---~Y~~C~~---s~pi~~~~~G~~~ 106 (185)
..+|++ .++.+.|. ..++++||++.|+... |+|...+.. ..+.+.. ........+...+
T Consensus 3 v~m~~~~~~~~F~P~-----------~i~v~~G~tV~~~n~~~~~H~v~~~~~~~p~~~~~~~~~~~~~~~~~~~G~~~~ 71 (99)
T 1plc_A 3 VLLGADDGSLAFVPS-----------EFSISPGEKIVFKNNAGFPHNIVFDEDSIPSGVDASKISMSEEDLLNAKGETFE 71 (99)
T ss_dssp EEESCTTCCSCEESS-----------EEEECTTCEEEEEECSSCCBCCEECTTSSCTTCCHHHHCCCTTCCBCSTTCEEE
T ss_pred EEEecCCCcceEeCC-----------EEEECCCCEEEEEECCCCceEEEEeCCCCcccccccccccccCccccCCCCEEE
Confidence 456653 45666442 3689999999998763 888765321 1121110 0111122233458
Q ss_pred EEecCcccEEEEeCCCCCCCCCCeEEEEEe
Q 038631 107 FRLDHPGPFYFISGASGHCEKGQRMIIKVM 136 (185)
Q Consensus 107 v~L~~~G~~YFiCgv~~HC~~GmKl~I~V~ 136 (185)
++++++|.|+|+|. .||+.||+..|.|.
T Consensus 72 ~tf~~~G~y~~~C~--~H~~~gM~G~i~V~ 99 (99)
T 1plc_A 72 VALSNKGEYSFYCS--PHQGAGMVGKVTVN 99 (99)
T ss_dssp EECCSCEEEEEECG--GGTTTTCEEEEEEC
T ss_pred EEECCCceEEEEcC--CCcccCCEEEEEEC
Confidence 89999999999999 89999999999984
No 14
>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus}
Probab=98.69 E-value=1.2e-07 Score=72.32 Aligned_cols=92 Identities=15% Similarity=0.291 Sum_probs=60.8
Q ss_pred eeEEEEEeC-CCCCCCCCCCCCcchhhhccCCeeeeccEeeEEee------CCcEEEEccc------------------c
Q 038631 33 HSLEFQVGG-NRGWVVPPANDSKIYNDWASENRFQVGDTIRFKYK------KDSVMEVTDK------------------E 87 (185)
Q Consensus 33 ~A~~~~VGg-~~GW~~p~~~~~~~Y~~Wa~~~tF~vGD~LvF~y~------~hsV~~V~~~------------------~ 87 (185)
...+..||. ..++.+.|. ..++++||++.|++. .|++...... +
T Consensus 17 ~~~~V~v~~~~~~~~F~p~-----------~i~v~~G~~V~~~~~N~~~~~~H~~~i~~~~~~~~~~~~~~~~~~g~~~~ 85 (139)
T 2aan_A 17 GPVTIEIGSKGEELAFDKT-----------ELTVSAGQTVTIRFKNNSAVQQHNWILVKGGEAEAANIANAGLSAGPAAN 85 (139)
T ss_dssp CCEEEEEEBCTTSSSBSCS-----------EEEECTTCEEEEEEECCCSSCCBCCEEESSCHHHHHHHHHHHHHHCGGGT
T ss_pred cCEEEEEEecCCccEEcCC-----------eEEECCCCEEEEEEEeCCCCCCeeEEEeccccccchhhhhhhhccccccc
Confidence 345566753 246777542 368999999998875 3777665422 5
Q ss_pred cCCCCCCCCce---eeCCC-CeEEE--ecCcccEEEEeCCCCCCCCCCeEEEEEe
Q 038631 88 YKKCNSTHPIF---FSNTG-NTAFR--LDHPGPFYFISGASGHCEKGQRMIIKVM 136 (185)
Q Consensus 88 Y~~C~~s~pi~---~~~~G-~~~v~--L~~~G~~YFiCgv~~HC~~GmKl~I~V~ 136 (185)
|..|...+.+. ....| ..+++ .++||.|+|+|.+++||+ ||+-.|.|.
T Consensus 86 ~~p~~~~~~~~~t~~l~pGet~~v~f~~~~pG~y~f~C~~~~H~~-GM~G~i~V~ 139 (139)
T 2aan_A 86 YLPADKSNIIAESPLANGNETVEVTFTAPAAGTYLYICTVPGHYP-LMQGKLVVN 139 (139)
T ss_dssp TCCSCCTTEEEECCCBCTTCEEEEEEECCSSEEEEEECCSTTTTT-TSEEEEEEC
T ss_pred ccCcccccccccccccCCCCEEEEEEECCCCeEEEEEcCCCChHH-cCEEEEEEC
Confidence 66665332211 12233 33444 458999999999999999 999999884
No 15
>3erx_A Pseudoazurin; copper protein, high-resolution, E transport, metal-binding, transport; 1.25A {Paracoccus pantotrophus} SCOP: b.6.1.1 PDB: 1adw_A
Probab=98.67 E-value=2.6e-08 Score=76.19 Aligned_cols=69 Identities=16% Similarity=0.136 Sum_probs=51.3
Q ss_pred CCeeeeccEeeEEeeC--CcEEEEcccccCCCCCCCC--ceeeCCCCeEEEecCcccEEEEeCCCCCCCCCCeEEEEEec
Q 038631 62 ENRFQVGDTIRFKYKK--DSVMEVTDKEYKKCNSTHP--IFFSNTGNTAFRLDHPGPFYFISGASGHCEKGQRMIIKVMY 137 (185)
Q Consensus 62 ~~tF~vGD~LvF~y~~--hsV~~V~~~~Y~~C~~s~p--i~~~~~G~~~v~L~~~G~~YFiCgv~~HC~~GmKl~I~V~~ 137 (185)
..++++||++.|...+ |+|...+. +.+.+. .....+...++++++||.|+|+|. .||..||+-.|.|..
T Consensus 22 ~i~V~~GdtV~f~~~~~~H~v~~~~~-----~~P~g~~~f~~~pg~t~s~TF~~pG~y~y~C~--~H~~~GM~G~I~V~~ 94 (123)
T 3erx_A 22 FVRAEPGDVINFVPTDKSHNVEAIKE-----ILPEGVESFKSKINESYTLTVTEPGLYGVKCT--PHFGMGMVGLVQVGD 94 (123)
T ss_dssp EEEECTTEEEEEEESSTTCCCEECTT-----SSCTTCCCCBCCTTCCEEEEECSCEEEEEECG--GGTTTTCEEEEEESS
T ss_pred EEEECCCCEEEEEECCCCceEEEcCC-----cCCCCccceecCCCCEEEEEeCCCeEEEEEeC--CCCcCCcEEEEEECC
Confidence 4689999999999975 99875321 222211 111123356889999999999999 799999999999975
No 16
>1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} SCOP: b.6.1.1 PDB: 1kdi_A 2bz7_A 2bzc_A
Probab=98.63 E-value=6e-08 Score=69.80 Aligned_cols=87 Identities=11% Similarity=0.206 Sum_probs=57.3
Q ss_pred EEEeCC-CCCCCCCCCCCcchhhhccCCeeeeccEeeEEeeC---CcEEEEcccccC----CCCCC-----CCceeeCCC
Q 038631 37 FQVGGN-RGWVVPPANDSKIYNDWASENRFQVGDTIRFKYKK---DSVMEVTDKEYK----KCNST-----HPIFFSNTG 103 (185)
Q Consensus 37 ~~VGg~-~GW~~p~~~~~~~Y~~Wa~~~tF~vGD~LvF~y~~---hsV~~V~~~~Y~----~C~~s-----~pi~~~~~G 103 (185)
..+|++ .++.+.|. ..++++||++.|.... |++...+...++ .|... +......+.
T Consensus 3 V~~g~~~~~~~F~P~-----------~i~v~~G~tV~~~n~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~ 71 (102)
T 1kdj_A 3 VEVGDEVGNFKFYPD-----------SITVSAGEAVEFTLVGETGHNIVFDIPAGAPGTVASELKAASMDENDLLSEDEP 71 (102)
T ss_dssp EEESCTTCCCCEESS-----------EEEECTTCCEEEEECSSSCBCCEECCCTTCCHHHHHHHHHTSCCTTCCBBTTBC
T ss_pred EEEecCCCccEEeCC-----------EEEECCCCEEEEEECCCCCeEEEEeCcccccccccchhhcccccccceecCCCC
Confidence 456763 45666442 3589999999998763 888764322221 11110 111122223
Q ss_pred CeEEEecCcccEEEEeCCCCCCCCCCeEEEEEe
Q 038631 104 NTAFRLDHPGPFYFISGASGHCEKGQRMIIKVM 136 (185)
Q Consensus 104 ~~~v~L~~~G~~YFiCgv~~HC~~GmKl~I~V~ 136 (185)
..+++++++|.|+|+|. .||+.||+..|.|.
T Consensus 72 ~~~~tf~~~G~y~y~C~--~H~~~gM~G~i~V~ 102 (102)
T 1kdj_A 72 SFKAKVSTPGTYTFYCT--PHKSANMKGTLTVK 102 (102)
T ss_dssp EEEECCCSCEEEEEECS--TTGGGTCEEEEEEC
T ss_pred EEEEEeCCCeEEEEEeC--CCcccCCeEEEEEC
Confidence 45788899999999999 99999999999984
No 17
>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A*
Probab=98.61 E-value=9.3e-08 Score=68.21 Aligned_cols=87 Identities=20% Similarity=0.250 Sum_probs=57.4
Q ss_pred EEEEeCC-CCCCCCCCCCCcchhhhccCCeeeeccEeeEEeeC---CcEEEEcccc---cCCCCCCCCceeeCCCCeEEE
Q 038631 36 EFQVGGN-RGWVVPPANDSKIYNDWASENRFQVGDTIRFKYKK---DSVMEVTDKE---YKKCNSTHPIFFSNTGNTAFR 108 (185)
Q Consensus 36 ~~~VGg~-~GW~~p~~~~~~~Y~~Wa~~~tF~vGD~LvF~y~~---hsV~~V~~~~---Y~~C~~s~pi~~~~~G~~~v~ 108 (185)
+..+|++ .++.+.|. ..++++||++.|.... |++...+... .+.+... ......+...+++
T Consensus 4 ~V~~~~~~~~~~F~P~-----------~i~v~~G~~V~~~n~~~~~H~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~t 71 (97)
T 1b3i_A 4 QIKMGTDKYAPLYEPK-----------ALSISAGDTVEFVMNKVGPHNVIFDKVPAGESAPALSNT-KLAIAPGSFYSVT 71 (97)
T ss_dssp EEEEEETTTEEEEESS-----------EEEECTTCEEEEEECSSCCCCBEEEECCTTSCHHHHCBC-CCCCSCSCCEEEE
T ss_pred EEEEeccCCccEEeCC-----------EEEECCCCEEEEEECCCCCeEEEEeCCCCcccccccccc-ceecCCCCEEEEE
Confidence 3456643 45666442 3589999999999763 8887643221 0001111 1112233456888
Q ss_pred ecCcccEEEEeCCCCCCCCCCeEEEEEe
Q 038631 109 LDHPGPFYFISGASGHCEKGQRMIIKVM 136 (185)
Q Consensus 109 L~~~G~~YFiCgv~~HC~~GmKl~I~V~ 136 (185)
++++|.|+|+|. .||+.||+..|.|.
T Consensus 72 f~~~G~y~y~C~--~H~~~gM~G~i~V~ 97 (97)
T 1b3i_A 72 LGTPGTYSFYCT--PHRGAGMVGTITVE 97 (97)
T ss_dssp CCSCSEEEEECS--STTTTTCEEEEEEC
T ss_pred eCCCeEEEEEcc--ChhhcCCEEEEEEC
Confidence 999999999999 89999999999984
No 18
>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant, electron transport; 1.75A {Silene latifolia subsp} SCOP: b.6.1.1 PDB: 1pla_A 1plb_A
Probab=98.59 E-value=1.2e-07 Score=67.89 Aligned_cols=87 Identities=15% Similarity=0.235 Sum_probs=56.8
Q ss_pred EEEeC-CCCCCCCCCCCCcchhhhccCCeeeeccEeeEEeeC---CcEEEEccc---ccCCCCC---CCCceeeCCCCeE
Q 038631 37 FQVGG-NRGWVVPPANDSKIYNDWASENRFQVGDTIRFKYKK---DSVMEVTDK---EYKKCNS---THPIFFSNTGNTA 106 (185)
Q Consensus 37 ~~VGg-~~GW~~p~~~~~~~Y~~Wa~~~tF~vGD~LvF~y~~---hsV~~V~~~---~Y~~C~~---s~pi~~~~~G~~~ 106 (185)
..+|+ +.+..+.|. ..++++||++.|+... |+|...+.. .++.+.. ........+...+
T Consensus 3 V~~~~~~~~~~F~P~-----------~i~v~~G~tV~~~n~~~~~H~~~~~~~~~p~g~~~~~~~~~~~~~~~~~G~~~~ 71 (99)
T 1byp_A 3 VLLGSSDGGLAFVPS-----------DLSIASGEKITFKNNAGFPHNDLFDKKEVPAGVDVTKISMPEEDLLNAPGEEYS 71 (99)
T ss_dssp EEESCTTSCCSEESS-----------EEEECTTEEEEEEECSSCCBCCEECTTSSCTTCCHHHHSCCTTCCBCSTTCEEE
T ss_pred EEEecCCCcceEeCC-----------EEEECCCCEEEEEECCCCcceEEEeCCCCccccccccccccccceeeCCCCEEE
Confidence 45664 445666442 3589999999998764 888654321 1222211 0111112223458
Q ss_pred EEecCcccEEEEeCCCCCCCCCCeEEEEEe
Q 038631 107 FRLDHPGPFYFISGASGHCEKGQRMIIKVM 136 (185)
Q Consensus 107 v~L~~~G~~YFiCgv~~HC~~GmKl~I~V~ 136 (185)
++++++|.|.|+|. .||+.||+..|.|.
T Consensus 72 ~~f~~~G~y~~~C~--~H~~~gM~G~i~V~ 99 (99)
T 1byp_A 72 VTLTEKGTYKFYCA--PHAGAGMVGKVTVN 99 (99)
T ss_dssp EEECSCEEEEEECG--GGTTTTCEEEEEEC
T ss_pred EEeCCCcEEEEEcC--CccccCCEEEEEEC
Confidence 88999999999999 89999999999984
No 19
>3tu6_A Pseudoazurin (blue copper protein); cupredoxins, beta barrel, electron transfer, redox, electron transport; 2.00A {Sinorhizobium meliloti}
Probab=98.57 E-value=8.5e-08 Score=73.76 Aligned_cols=71 Identities=20% Similarity=0.142 Sum_probs=51.8
Q ss_pred CCeeeeccEeeEEeeC--CcEEEEcccccCCCCCCCCc--eeeCCCCeEEEecCcccEEEEeCCCCCCCCCCeEEEEEec
Q 038631 62 ENRFQVGDTIRFKYKK--DSVMEVTDKEYKKCNSTHPI--FFSNTGNTAFRLDHPGPFYFISGASGHCEKGQRMIIKVMY 137 (185)
Q Consensus 62 ~~tF~vGD~LvF~y~~--hsV~~V~~~~Y~~C~~s~pi--~~~~~G~~~v~L~~~G~~YFiCgv~~HC~~GmKl~I~V~~ 137 (185)
..++++||++.|.+.+ |+|...+. +.+.... ....+...++++++||.|+|+|. .||..||+..|.|.+
T Consensus 24 ~i~V~~GDtVtf~n~~~~H~v~~~~~-----~~P~g~~~f~s~pGet~s~TF~~pG~y~y~C~--~H~~~GM~G~I~V~~ 96 (127)
T 3tu6_A 24 VIRAQPGDTVTFVAKDKGHNSALMKG-----GAPEGAETWKGKINEEITVTLSKPGVYMYQCA--PHVGMGMIGAIVVGE 96 (127)
T ss_dssp EEEECTTCEEEEECSSSSCCCEECTT-----CSCTTCCCCBCCTTCCCEEECCSCEEEEEECT--TTGGGTCEEEEEESS
T ss_pred EEEECCCCEEEEEECCCCceEEEccC-----cCCCCccceecCCCCEEEEEeCCCeEEEEEeC--CCCcCCcEEEEEECc
Confidence 4689999999999975 99976432 1111111 11122346899999999999999 699999999999986
Q ss_pred CC
Q 038631 138 HE 139 (185)
Q Consensus 138 ~~ 139 (185)
++
T Consensus 97 ~~ 98 (127)
T 3tu6_A 97 PA 98 (127)
T ss_dssp CT
T ss_pred CC
Confidence 43
No 20
>3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} SCOP: b.6.1.0
Probab=98.52 E-value=2.1e-07 Score=71.44 Aligned_cols=81 Identities=15% Similarity=0.190 Sum_probs=57.6
Q ss_pred EeCCC-CCCCCCCCCCcchhhhccCCeeeeccEeeEEeeC--CcEEEEcccccCCCCCCCCc--eeeCCCCeEEEecCcc
Q 038631 39 VGGNR-GWVVPPANDSKIYNDWASENRFQVGDTIRFKYKK--DSVMEVTDKEYKKCNSTHPI--FFSNTGNTAFRLDHPG 113 (185)
Q Consensus 39 VGg~~-GW~~p~~~~~~~Y~~Wa~~~tF~vGD~LvF~y~~--hsV~~V~~~~Y~~C~~s~pi--~~~~~G~~~v~L~~~G 113 (185)
+|++. ++.+.|. ..+.++||++.|.+.. |+|...+. +.+.+.. ....+...+++++++|
T Consensus 10 ~g~~G~~~~F~P~-----------~i~V~~GDTV~f~n~~~~Hnv~~~~~-----~~p~g~~~~~~~pg~t~s~TF~~~G 73 (124)
T 3ef4_A 10 KDDAGNTMVFQPG-----------FVKVEAGDTVKFVPTDKSHNAESVRE-----VWPEGVAPVKGGFSKEVVFNAEKEG 73 (124)
T ss_dssp ECTTSCEEEEESS-----------EEEECTTCEEEEECSSSSCCCEECTT-----TSCTTSCCCBCCTTCCEEEECCSSE
T ss_pred cCCCCceeEEeCC-----------EEEECCCCEEEEEECCCCccEEEeCC-----cCCCCccccccCCCCEEEEEeCCCe
Confidence 44443 3777653 4689999999999975 99876421 2222211 1112234688999999
Q ss_pred cEEEEeCCCCCCCCCCeEEEEEec
Q 038631 114 PFYFISGASGHCEKGQRMIIKVMY 137 (185)
Q Consensus 114 ~~YFiCgv~~HC~~GmKl~I~V~~ 137 (185)
.|.|+|. .||..||+-.|.|..
T Consensus 74 ~y~Y~C~--~H~~~GM~G~I~V~~ 95 (124)
T 3ef4_A 74 LYVLKCA--PHYGMGMVVLVQVGK 95 (124)
T ss_dssp EEEEECT--TTGGGTCEEEEEESS
T ss_pred EEEEEcC--CCCcCCCEEEEEECC
Confidence 9999997 799999999999976
No 21
>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} SCOP: b.6.1.1
Probab=98.51 E-value=1.6e-07 Score=66.91 Aligned_cols=89 Identities=15% Similarity=0.229 Sum_probs=57.2
Q ss_pred EEEEEeCC-CCCCCCCCCCCcchhhhccCCeeeeccEeeEEeeC---CcEEEEcc---cccCCCCCCCCceeeCCC-CeE
Q 038631 35 LEFQVGGN-RGWVVPPANDSKIYNDWASENRFQVGDTIRFKYKK---DSVMEVTD---KEYKKCNSTHPIFFSNTG-NTA 106 (185)
Q Consensus 35 ~~~~VGg~-~GW~~p~~~~~~~Y~~Wa~~~tF~vGD~LvF~y~~---hsV~~V~~---~~Y~~C~~s~pi~~~~~G-~~~ 106 (185)
.+..+|++ .++.+.|. ..++++||++.|+... |++...+. .+++.+...........| ..+
T Consensus 2 ~~V~m~~~~~~~~F~P~-----------~i~v~~G~~V~~~n~~~~~H~~~~~~~~~p~~~~~~~~~~~~~~~~pG~~~~ 70 (98)
T 2plt_A 2 ATVKLGADSGALEFVPK-----------TLTIKSGETVNFVNNAGFPHNIVFDEDAIPSGVNADAISRDDYLNAPGETYS 70 (98)
T ss_dssp EEEEESCTTCCSSEESS-----------EEEECTTCEEEEEECSSCCEEEEECGGGSCTTCCHHHHCEEEEECSTTCEEE
T ss_pred EEEEEecCCCCceEeCC-----------EEEECCCCEEEEEECCCCceEEEEeCCCCCCccccccccccceecCCCCEEE
Confidence 34556643 45776542 3589999999998764 77765432 111211111001122233 457
Q ss_pred EEecCcccEEEEeCCCCCCCCCCeEEEEEe
Q 038631 107 FRLDHPGPFYFISGASGHCEKGQRMIIKVM 136 (185)
Q Consensus 107 v~L~~~G~~YFiCgv~~HC~~GmKl~I~V~ 136 (185)
++++++|.|+|+|. .||+.||+..|.|.
T Consensus 71 ~tf~~~G~y~y~C~--~H~~~gM~G~i~V~ 98 (98)
T 2plt_A 71 VKLTAAGEYGYYCE--PHQGAGMVGKIIVQ 98 (98)
T ss_dssp EECCSCEEEEEECG--GGGGGTCEEEEEEC
T ss_pred EEeCCCeEEEEEcC--CccccCCeEEEEEC
Confidence 88999999999999 79999999999984
No 22
>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A
Probab=98.41 E-value=5e-07 Score=64.48 Aligned_cols=88 Identities=15% Similarity=0.275 Sum_probs=55.7
Q ss_pred EEEEeCC-CCCCCCCCCCCcchhhhccCCeeeeccEeeEEeeC---CcEEEEcccc--cCCCCCCCCceeeCCC-CeEEE
Q 038631 36 EFQVGGN-RGWVVPPANDSKIYNDWASENRFQVGDTIRFKYKK---DSVMEVTDKE--YKKCNSTHPIFFSNTG-NTAFR 108 (185)
Q Consensus 36 ~~~VGg~-~GW~~p~~~~~~~Y~~Wa~~~tF~vGD~LvF~y~~---hsV~~V~~~~--Y~~C~~s~pi~~~~~G-~~~v~ 108 (185)
+..+|.+ .++.+.|. ..++++||++.|.... |++...+... -+.............| ..+++
T Consensus 4 ~V~~~~~~~~~~F~P~-----------~i~v~~G~~V~~~n~~~~~H~~~~~~~~~pg~~~~~~~~~~~~~~pG~~~~~t 72 (98)
T 1pcs_A 4 TVKMGSDSGALVFEPS-----------TVTIKAGEEVKWVNNKLSPHNIVFDADGVPADTAAKLSHKGLLFAAGESFTST 72 (98)
T ss_dssp EEEESCTTSCSSEESS-----------EEEECTTCEEEEEECSSCCEEEEECCSSSCHHHHHHHCEEEEECSTTCEEEEE
T ss_pred EEEEecCCCccEEeCC-----------EEEECCCCEEEEEECCCCCcEEEEeCCCCCccccccccccccccCCCCEEEEE
Confidence 4456643 56776542 3589999999999763 7776532110 0000000001112223 45788
Q ss_pred ecCcccEEEEeCCCCCCCCCCeEEEEEe
Q 038631 109 LDHPGPFYFISGASGHCEKGQRMIIKVM 136 (185)
Q Consensus 109 L~~~G~~YFiCgv~~HC~~GmKl~I~V~ 136 (185)
++++|.|+|+|. .||+.||+..|.|.
T Consensus 73 f~~~G~y~~~C~--~H~~~gM~G~i~V~ 98 (98)
T 1pcs_A 73 FTEPGTYTYYCE--PHRGAGMVGKVVVE 98 (98)
T ss_dssp CCSCEEEEEECG--GGTTTTCEEEEEEC
T ss_pred cCCCeEEEEEcC--CccccCCeEEEEEC
Confidence 899999999999 79999999999984
No 23
>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=97.97 E-value=1.5e-05 Score=60.88 Aligned_cols=66 Identities=14% Similarity=0.153 Sum_probs=44.4
Q ss_pred CCeeeeccEeeEEeeC---CcEEEEcccccCCCCCCCCc--eeeCCC-CeEEEecCcccEEEEeCCCCCCCCCCeEEEEE
Q 038631 62 ENRFQVGDTIRFKYKK---DSVMEVTDKEYKKCNSTHPI--FFSNTG-NTAFRLDHPGPFYFISGASGHCEKGQRMIIKV 135 (185)
Q Consensus 62 ~~tF~vGD~LvF~y~~---hsV~~V~~~~Y~~C~~s~pi--~~~~~G-~~~v~L~~~G~~YFiCgv~~HC~~GmKl~I~V 135 (185)
..++++||++.|.... |+|...+... ..... .....| ...++++++|.|.|+|.. |. ||+..|.|
T Consensus 61 ~i~V~~GdtV~~~N~d~~~H~v~~~~~~~-----g~~~~~s~~l~pG~t~~~tF~~~G~y~y~C~~--H~--gM~G~I~V 131 (132)
T 3c75_A 61 EVTIKAGETVYWVNGEVMPHNVAFKKGIV-----GEDAFRGEMMTKDQAYAITFNEAGSYDYFCTP--HP--FMRGKVIV 131 (132)
T ss_dssp EEEECTTCEEEEEECSSSCBCCEECTTTS-----SSSCEECCCBCTTEEEEEEECSCEEEEEECSS--CT--TCEEEEEE
T ss_pred EEEECCCCEEEEEECCCCceEEEEeCCCC-----CcccccccccCCCCEEEEEcCCCEEEEEEeCC--Cc--CCEEEEEE
Confidence 3588999999998653 8876543211 00000 011223 357888999999999997 75 99999988
Q ss_pred e
Q 038631 136 M 136 (185)
Q Consensus 136 ~ 136 (185)
.
T Consensus 132 ~ 132 (132)
T 3c75_A 132 E 132 (132)
T ss_dssp C
T ss_pred C
Confidence 4
No 24
>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A
Probab=97.91 E-value=2.3e-05 Score=56.05 Aligned_cols=86 Identities=17% Similarity=0.268 Sum_probs=54.3
Q ss_pred EEEEeCC-CCCCCCCCCCCcchhhhccCCeeeeccEeeEEeeC---CcEEEEcccccCCCCC-------C-CCceeeCCC
Q 038631 36 EFQVGGN-RGWVVPPANDSKIYNDWASENRFQVGDTIRFKYKK---DSVMEVTDKEYKKCNS-------T-HPIFFSNTG 103 (185)
Q Consensus 36 ~~~VGg~-~GW~~p~~~~~~~Y~~Wa~~~tF~vGD~LvF~y~~---hsV~~V~~~~Y~~C~~-------s-~pi~~~~~G 103 (185)
+..+|.+ .+..++|. ..+++.||++.|.... |++..-.. . ..+.. . .......+.
T Consensus 4 ~V~~~~~~~~~~f~p~-----------~i~v~~Gd~V~~~N~~~~~H~v~~~~~-~-~~~~~g~~~~~~~~~~~~i~pG~ 70 (105)
T 3cvb_A 4 TVKMGADSGLFQFEPA-----------NVTVHPGDTVKWVNNKLPPHNILFDDK-Q-VPGASKELADKLSHSQLMFSPGE 70 (105)
T ss_dssp EEEESCTTCCSCEESS-----------EEEECTTEEEEEEECSSCCEEEEECTT-S-SGGGCHHHHHHHCEEEEECSTTC
T ss_pred EEEEeecCCccEEeCC-----------EEEEcCCCEEEEEECCCCCCeEEEeCC-C-CCcccccccccccccccccCCCC
Confidence 4556653 56776542 3588999999998653 67664321 1 11100 0 001111223
Q ss_pred CeEEEe---cCcccEEEEeCCCCCCCCCCeEEEEEe
Q 038631 104 NTAFRL---DHPGPFYFISGASGHCEKGQRMIIKVM 136 (185)
Q Consensus 104 ~~~v~L---~~~G~~YFiCgv~~HC~~GmKl~I~V~ 136 (185)
..++++ +++|+++|.|. .|+..||+-.|.|.
T Consensus 71 ~~~~~f~~~~~~G~y~y~C~--~H~~~GM~G~i~V~ 104 (105)
T 3cvb_A 71 SYEITFSSDFPAGTYTYYCA--PHRGAGMVGKITVE 104 (105)
T ss_dssp EEEEEECTTSCSEEEEEECT--TTGGGTCEEEEEEC
T ss_pred eEEEEEecCCCCeeEEEEeC--CchhcCCEEEEEEc
Confidence 446777 78999999999 79999999999985
No 25
>2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A
Probab=97.79 E-value=3.3e-05 Score=58.47 Aligned_cols=67 Identities=15% Similarity=0.083 Sum_probs=47.4
Q ss_pred CCeeeeccEeeEEeeC--CcEEEEcccccCCCCCCCCc--eeeCCCCeEEEecCcccEEEEeCCCCCCCCCCeEEEEEec
Q 038631 62 ENRFQVGDTIRFKYKK--DSVMEVTDKEYKKCNSTHPI--FFSNTGNTAFRLDHPGPFYFISGASGHCEKGQRMIIKVMY 137 (185)
Q Consensus 62 ~~tF~vGD~LvF~y~~--hsV~~V~~~~Y~~C~~s~pi--~~~~~G~~~v~L~~~G~~YFiCgv~~HC~~GmKl~I~V~~ 137 (185)
..++++||++.|.... |+|...+ .+-+.... ....+...+++++++|.|+|+|.. |+. |+..|.|.+
T Consensus 22 ~i~V~~GdtV~f~n~d~~H~v~~~~-----~~~p~~~~~~~~~~g~t~~~tF~~~G~y~y~C~~--H~~--M~G~I~V~~ 92 (122)
T 2ux6_A 22 SLKVAPGDTVTFIPTDKGHNVETIK-----GMIPDGAEAFKSKINENYKVTFTAPGVYGVKCTP--HPF--MVGVVQVGD 92 (122)
T ss_dssp EEEECTTEEEEEEESSSSCCCEECT-----TCSCTTCCCCBCCTTCCEEEEECSCEEEEEEETT--EEE--EEEEEEESS
T ss_pred EEEECCCCEEEEEECCCCcEEEEcc-----cccCCCcceeecCCCCEEEEEeCCCEEEEEEeCC--Ccc--CEEEEEEeC
Confidence 3588999999999864 8987643 12111111 111223468889999999999997 887 999999975
No 26
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=97.76 E-value=1.5e-05 Score=57.41 Aligned_cols=64 Identities=13% Similarity=0.166 Sum_probs=43.3
Q ss_pred CCeeeeccEeeEEeeC-----CcEEEEcccccCCCCCCCCceeeCCCC---eEEEecCcccEEEEeCCCCCCCCCCeEEE
Q 038631 62 ENRFQVGDTIRFKYKK-----DSVMEVTDKEYKKCNSTHPIFFSNTGN---TAFRLDHPGPFYFISGASGHCEKGQRMII 133 (185)
Q Consensus 62 ~~tF~vGD~LvF~y~~-----hsV~~V~~~~Y~~C~~s~pi~~~~~G~---~~v~L~~~G~~YFiCgv~~HC~~GmKl~I 133 (185)
..++++||++.|.+.+ |++.. .....+ .....|. ..++.+++|.|.|+|. .||..||+-.|
T Consensus 29 ~i~v~~G~tV~~~~~n~d~~~H~~~~-~~~~~~--------~~~~pg~~~~~~~t~~~~G~Y~y~C~--~H~~~gM~G~i 97 (100)
T 4hci_A 29 VITIPINESTTLLLKNKGKSEHTFTI-KKLGID--------VVVESGKEKNITVKPKSAGTYELICR--YHLLKGMEGKV 97 (100)
T ss_dssp EEEECTTSCEEEEEEECSSSCEEEEE-GGGTEE--------EEECTTCEEEEEECCCSCEEEEEECT--TTGGGTCEEEE
T ss_pred EEEECCCCEEEEEEEcCCCceEEEEE-ecCCcc--------eeecCCcceeEEEecccCceEEEECc--cccCCCCEEEE
Confidence 4689999999998864 33332 111110 1112232 3556689999999996 69999999999
Q ss_pred EEe
Q 038631 134 KVM 136 (185)
Q Consensus 134 ~V~ 136 (185)
.|.
T Consensus 98 ~Ve 100 (100)
T 4hci_A 98 IVK 100 (100)
T ss_dssp EEC
T ss_pred EEC
Confidence 984
No 27
>3ay2_A Lipid modified azurin protein; beta sandwich, bacterial protein, anticancer, anti-HIV/AIDS, antiparasitic activity, antitumor protein; 1.90A {Neisseria gonorrhoeae}
Probab=97.67 E-value=0.00014 Score=58.36 Aligned_cols=91 Identities=13% Similarity=0.217 Sum_probs=55.8
Q ss_pred eEEEEEeCCCCCCCCCCCCCcchhhhccCCee-eeccEeeEEeeC----------CcEEEEcccc---------------
Q 038631 34 SLEFQVGGNRGWVVPPANDSKIYNDWASENRF-QVGDTIRFKYKK----------DSVMEVTDKE--------------- 87 (185)
Q Consensus 34 A~~~~VGg~~GW~~p~~~~~~~Y~~Wa~~~tF-~vGD~LvF~y~~----------hsV~~V~~~~--------------- 87 (185)
..+..|+.+.++.+.|. ..++ +.||++.|.+.+ |+++..+..+
T Consensus 42 ~~~V~I~~~d~m~F~P~-----------~itV~kaG~~Vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~v~~~~m~~~~~~ 110 (167)
T 3ay2_A 42 NCAATVESNDNMQFNTK-----------DIQVSKACKEFTITLKHTGTQPKASMGHNLVIAKAEDMDGVFKDGVGAADTD 110 (167)
T ss_dssp CCEEEEEECTTSCBSCS-----------EEEEETTCSSEEEEEEECSCSCHHHHCBCCEEEEGGGHHHHHHHHGGGGGGT
T ss_pred ceEEEEEeCCCceEecc-----------eEEEecCCCEEEEEEEECCCCccccccceEEeccCcchhhhHHHhhhccccc
Confidence 34566776667777542 2455 679987766642 7766554332
Q ss_pred cCCCCCCCCc---eeeCCC-CeEEEec----CcccEEEEeCCCCCCCCCCeEEEEEe
Q 038631 88 YKKCNSTHPI---FFSNTG-NTAFRLD----HPGPFYFISGASGHCEKGQRMIIKVM 136 (185)
Q Consensus 88 Y~~C~~s~pi---~~~~~G-~~~v~L~----~~G~~YFiCgv~~HC~~GmKl~I~V~ 136 (185)
|..=+..+-+ .....| ...|+++ ++|.|+|+|++++|=+ |||-.|.|.
T Consensus 111 ~v~~~d~~vl~~t~~l~pGet~svtf~~~~lkpG~Y~f~Ct~PgH~~-gM~G~i~V~ 166 (167)
T 3ay2_A 111 YVKPDDARVVAHTKLIGGGEESSLTLDPAKLADGDYKFACTFPGHGA-LMNGKVTLV 166 (167)
T ss_dssp TSCTTCTTEEEECCCBCTTCEEEEEECGGGGTTSCEEEECCSTTGGG-TSEEEEEEE
T ss_pred cccccccchhccceeeCCCCEEEEEEecCCCCCcEEEEEcCCCCchh-cCEEEEEEe
Confidence 2110111111 011233 3456654 7999999999999988 999999986
No 28
>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3l45_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A ...
Probab=97.55 E-value=9.9e-05 Score=53.63 Aligned_cols=82 Identities=16% Similarity=0.106 Sum_probs=52.5
Q ss_pred eeEEEEEeCCCCCCCCCCCCCcchhhhccCCeeeeccEeeEEeeC---CcEEEEcccc----cCCCCCCCCceeeCCCCe
Q 038631 33 HSLEFQVGGNRGWVVPPANDSKIYNDWASENRFQVGDTIRFKYKK---DSVMEVTDKE----YKKCNSTHPIFFSNTGNT 105 (185)
Q Consensus 33 ~A~~~~VGg~~GW~~p~~~~~~~Y~~Wa~~~tF~vGD~LvF~y~~---hsV~~V~~~~----Y~~C~~s~pi~~~~~G~~ 105 (185)
.+.++.|.- .+|.+.|. ..++++||++.|.... |+|...+..+ |+... ...+...
T Consensus 17 ~a~~~~V~~-~~~~F~P~-----------~i~v~~Gd~V~~~N~d~~~H~v~~~~~~~g~~~~~~~~------~~pG~~~ 78 (105)
T 2ov0_A 17 ADGAIVVDI-AKMKYETP-----------ELHVKVGDTVTWINREAMPHNVHFVAGVLGEAALKGPM------MKKEQAY 78 (105)
T ss_dssp CTTCEEEEE-ETTEESSS-----------EEEECTTCEEEEEECSSSCBCCEECTTTSSSSCEECCC------BCTTEEE
T ss_pred CCcCEEEEE-eecEEcCC-----------EEEECCCCEEEEEECCCCCEEEEEcCCCCCcccccccc------cCCCCEE
Confidence 344555543 35776542 3588999999998653 8876532210 22110 1112245
Q ss_pred EEEecCcccEEEEeCCCCCCCCCCeEEEEEe
Q 038631 106 AFRLDHPGPFYFISGASGHCEKGQRMIIKVM 136 (185)
Q Consensus 106 ~v~L~~~G~~YFiCgv~~HC~~GmKl~I~V~ 136 (185)
+++++++|.|+|.|.. |- ||+-.|.|.
T Consensus 79 ~~tf~~~G~y~y~C~~--H~--gM~G~i~V~ 105 (105)
T 2ov0_A 79 SLTFTEAGTYDYHCTP--HP--FMRGKVVVE 105 (105)
T ss_dssp EEEECSCEEEEEECSS--CT--TCEEEEEEC
T ss_pred EEEeCCCEEEEEEeCC--CC--CCEEEEEEC
Confidence 7788999999999997 54 999999883
No 29
>1iko_P Ephrin-B2; greek KEY, glycosylation, signaling protein; HET: NAG MAN; 1.92A {Mus musculus} SCOP: b.6.1.5
Probab=97.50 E-value=2.8e-05 Score=63.29 Aligned_cols=76 Identities=20% Similarity=0.395 Sum_probs=51.8
Q ss_pred eeeccEeeEEeeC-----------CcEEEEcccccCCCCCCC-Cceee--C--CCCeEEEec-------------Ccc-c
Q 038631 65 FQVGDTIRFKYKK-----------DSVMEVTDKEYKKCNSTH-PIFFS--N--TGNTAFRLD-------------HPG-P 114 (185)
Q Consensus 65 F~vGD~LvF~y~~-----------hsV~~V~~~~Y~~C~~s~-pi~~~--~--~G~~~v~L~-------------~~G-~ 114 (185)
.++||.|-+--+. +.+++|++++|+.|+... +...+ + .+...+++. ++| .
T Consensus 26 v~igD~LdIiCP~~~~~~~~~~E~~~LY~Vs~~~y~~C~~~~~~~~l~~C~~P~~~~kftikFq~fsP~p~GlEF~pg~~ 105 (178)
T 1iko_P 26 PQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCARPDQDVKFTIKFQEFSPNLWGLEFQKNKD 105 (178)
T ss_dssp CCTTCEEEEECCCCCSSSCSCCCBEEEEEECHHHHHHTBCCTTCCCSEEECCTTSCCEEEEECCSSCSSTTCCCCCTTEE
T ss_pred ecCCCEEEEECCCCCCCCCCCceEEEEEEECHHHhhhcccCCCCcEEEEecCCCCCEEEEEEEEecCCCCCcccccCCCc
Confidence 4569999887542 258899999999998763 22221 2 233444432 466 7
Q ss_pred EEEEeCCC-----------CCCCC-CCeEEEEEecCCC
Q 038631 115 FYFISGAS-----------GHCEK-GQRMIIKVMYHEE 140 (185)
Q Consensus 115 ~YFiCgv~-----------~HC~~-GmKl~I~V~~~~~ 140 (185)
|||||.-. |+|.. +|||.|.|...+.
T Consensus 106 YY~IstS~G~~~gl~~~~gG~C~t~~Mkl~ikV~~~~~ 143 (178)
T 1iko_P 106 YYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGQDAS 143 (178)
T ss_dssp EEEECCCCBSGGGTTCCBSHHHHHSCCEEEEEETCC--
T ss_pred eEEEecCCcccccccccCCCccccceeEEEEEeecCCC
Confidence 99999864 78975 8999999975543
No 30
>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A
Probab=97.49 E-value=0.00052 Score=52.53 Aligned_cols=25 Identities=16% Similarity=0.286 Sum_probs=23.6
Q ss_pred CcccEEEEeCCCCCCCCCCeEEEEEe
Q 038631 111 HPGPFYFISGASGHCEKGQRMIIKVM 136 (185)
Q Consensus 111 ~~G~~YFiCgv~~HC~~GmKl~I~V~ 136 (185)
++|.|+|+|++++|=+ |||-.|.|.
T Consensus 104 ~~G~Y~f~C~~pgH~~-~M~G~i~V~ 128 (129)
T 1cuo_A 104 KDEAYTYFCSYPGHFS-MMRGTLKLE 128 (129)
T ss_dssp TTSCEEEECCSTTCTT-TSEEEEEEE
T ss_pred CCceEEEEeCCCCchH-cCEEEEEEe
Confidence 8999999999999998 999999986
No 31
>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1
Probab=97.49 E-value=0.0002 Score=52.28 Aligned_cols=64 Identities=14% Similarity=0.182 Sum_probs=44.3
Q ss_pred CCeeeeccEeeEEeeC---CcEEEEcccc----cCCCCCCCCceeeCCC-CeEEEecCcccEEEEeCCCCCCCCCCeEEE
Q 038631 62 ENRFQVGDTIRFKYKK---DSVMEVTDKE----YKKCNSTHPIFFSNTG-NTAFRLDHPGPFYFISGASGHCEKGQRMII 133 (185)
Q Consensus 62 ~~tF~vGD~LvF~y~~---hsV~~V~~~~----Y~~C~~s~pi~~~~~G-~~~v~L~~~G~~YFiCgv~~HC~~GmKl~I 133 (185)
..++++||++.|.... |+|...+... |+. .....| ..+++++++|.|.|+|.. |. ||+..|
T Consensus 35 ~i~V~~G~tV~~~N~d~~~H~v~~~~~~~~~~~~~s-------~~l~~g~~~~~tf~~~G~y~~~C~~--H~--~M~G~I 103 (106)
T 1id2_A 35 EVTIKAGETVYWVNGEVMPHNVAFKKGIVGEDAFRG-------EMMTKDQAYAITFNEAGSYDYFCTP--HP--FMRGKV 103 (106)
T ss_dssp EEEECTTCEEEEEECSSSCBCCEECTTTSSSSCEEC-------CCBCTTEEEEEEECSCEEEEEECSS--CT--TCEEEE
T ss_pred EEEECCCCEEEEEECCCCcEEEEEeCCCCCcccccc-------cccCCCCEEEEEeCCCEEEEEEeCC--CC--CCEEEE
Confidence 3588999999998653 8876532210 110 011223 457888999999999997 76 999999
Q ss_pred EEe
Q 038631 134 KVM 136 (185)
Q Consensus 134 ~V~ 136 (185)
.|.
T Consensus 104 ~V~ 106 (106)
T 1id2_A 104 IVE 106 (106)
T ss_dssp EEC
T ss_pred EEC
Confidence 884
No 32
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*
Probab=97.20 E-value=0.0036 Score=47.76 Aligned_cols=31 Identities=19% Similarity=0.341 Sum_probs=25.8
Q ss_pred eEEEec----Ccc-cEEEEeCCCCCCCCCCeEEEEEe
Q 038631 105 TAFRLD----HPG-PFYFISGASGHCEKGQRMIIKVM 136 (185)
Q Consensus 105 ~~v~L~----~~G-~~YFiCgv~~HC~~GmKl~I~V~ 136 (185)
..++++ ++| .|.|+|++++|=+ |||-.|+|.
T Consensus 92 ~~vtf~~~~l~~G~~Y~f~C~~PgH~~-gM~G~i~V~ 127 (128)
T 2iaa_C 92 DSVTFDVSKLKEGEDYAFFCSFPGHWS-IMKGTIELG 127 (128)
T ss_dssp EEEEEESSCCCTTCCEEEECCSTTCTT-TSEEEEEEC
T ss_pred EEEEEeccccCCCceEEEEECCCChhH-CCEEEEEEe
Confidence 455554 678 5999999999998 999999985
No 33
>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A
Probab=97.10 E-value=0.002 Score=49.25 Aligned_cols=31 Identities=16% Similarity=0.328 Sum_probs=25.2
Q ss_pred eEEEec----Cccc-EEEEeCCCCCCCCCCeEEEEEe
Q 038631 105 TAFRLD----HPGP-FYFISGASGHCEKGQRMIIKVM 136 (185)
Q Consensus 105 ~~v~L~----~~G~-~YFiCgv~~HC~~GmKl~I~V~ 136 (185)
..++++ ++|. |.|+|++++|=+ |||-.|.|.
T Consensus 93 ~svtf~~~~l~~G~~Y~f~C~~PgH~~-gM~G~i~V~ 128 (128)
T 1nwp_A 93 DSVTFDVSKLAAGEKYGFFCSFPGHIS-MMKGTVTLK 128 (128)
T ss_dssp EEEEEEGGGSCTTSCEEEECCSTTCGG-GSEEEEEEC
T ss_pred EEEEEeccccCCCceEEEEECCCChhH-CCEEEEEEC
Confidence 455554 5676 999999999998 999999883
No 34
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A
Probab=97.10 E-value=0.0032 Score=48.02 Aligned_cols=31 Identities=13% Similarity=0.288 Sum_probs=25.0
Q ss_pred eEEEe--c--Cccc-EEEEeCCCCCCCCCCeEEEEEe
Q 038631 105 TAFRL--D--HPGP-FYFISGASGHCEKGQRMIIKVM 136 (185)
Q Consensus 105 ~~v~L--~--~~G~-~YFiCgv~~HC~~GmKl~I~V~ 136 (185)
..+++ + ++|. |+|+|++++|=+ |||-.|+|.
T Consensus 93 ~svtf~~~~l~~G~~Y~f~C~~pgH~~-gM~G~i~V~ 128 (129)
T 2ccw_A 93 DSVTFDVSKIAAGENYAYFCSFPGHWA-MMKGTLKLG 128 (129)
T ss_dssp EEEEEEGGGSCTTCCEEEECCSTTGGG-TSEEEEEEC
T ss_pred EEEEEeccccCCCceEEEEeCCCChhH-cCEEEEEEe
Confidence 35554 3 5665 999999999988 999999985
No 35
>2x11_B Ephrin-A5; receptor-signaling protein complex, developmental protein, signaling platform, kinase, transferase, neurogenesis, receptor, cataract; 4.83A {Homo sapiens}
Probab=96.89 E-value=0.002 Score=52.42 Aligned_cols=98 Identities=17% Similarity=0.269 Sum_probs=58.4
Q ss_pred eeeEEEEEeCCCCCCCCCCCCCcchhhhccCCeeeeccEeeEEeeC------------CcEEEEcccccCCCCCCCCc-e
Q 038631 32 VHSLEFQVGGNRGWVVPPANDSKIYNDWASENRFQVGDTIRFKYKK------------DSVMEVTDKEYKKCNSTHPI-F 98 (185)
Q Consensus 32 a~A~~~~VGg~~GW~~p~~~~~~~Y~~Wa~~~tF~vGD~LvF~y~~------------hsV~~V~~~~Y~~C~~s~pi-~ 98 (185)
+.+..|.| =|+..++ . +..=.-....++||.|-+--+. ..++.|++++|++|+..... .
T Consensus 29 ~~~~r~~V----yWNSsNp---~-F~~~~~~i~V~i~D~LDIiCP~y~~~~~~~~~E~y~LY~Vs~e~y~~C~~~~~~~~ 100 (177)
T 2x11_B 29 AVADRYAV----YWNSSNP---R-FQRGDYHIDVCINDYLDVFCPHYEDSVPEDKTERYVLYMVNFDGYSACDHTSKGFK 100 (177)
T ss_dssp -CCSEEEE----ECSTTCH---H-HHTSCCEEEECTTCEEEEECCCCCSSSCSSSCCCEEEEEECHHHHHHTCCTTTEEE
T ss_pred ccCccCce----EcCCCCc---C-ccCCCceEEecCCCEEEEECCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCcE
Confidence 55666766 3985321 1 1100012468899999887542 13788999999999876532 2
Q ss_pred ee--C-----CCCeEEEec-------------Ccc-cEEEEeCC-----CCCCCCCCeEEEEEecCCC
Q 038631 99 FS--N-----TGNTAFRLD-------------HPG-PFYFISGA-----SGHCEKGQRMIIKVMYHEE 140 (185)
Q Consensus 99 ~~--~-----~G~~~v~L~-------------~~G-~~YFiCgv-----~~HC~~GmKl~I~V~~~~~ 140 (185)
.+ + .|+.+|++. +|| .||||++- ++-| |||+|.|.....
T Consensus 101 ~~~C~~P~~p~~~~kftikFQ~FSP~p~G~EF~pG~~YYyISTS~~~~~g~~C---lrLkV~V~p~~~ 165 (177)
T 2x11_B 101 RWECNRPHSPNGPLKFSEKFQLFTPFSLGFEFRPGREYFYISSAIPDNGRRSC---LKLKVFVRPTNS 165 (177)
T ss_dssp EEEECCTTCSSSSCEEEEECCSSCSSTTCCCCCTTEEEEEEEEESSCCCSSSC---CEEEEEECCTTT
T ss_pred EEEeCCCCCCCCCeEEEEEEEEcCCCCCCccccCCCeEEEEecCCCCCCCCcc---eEEEEEEEcCCC
Confidence 22 1 134444321 567 58888753 2345 999999986554
No 36
>3czu_B Ephrin-A1; ATP-binding, kinase, nucleotide-binding, receptor, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG MAN; 2.65A {Homo sapiens} PDB: 3mbw_B*
Probab=96.78 E-value=0.0015 Score=53.32 Aligned_cols=75 Identities=19% Similarity=0.317 Sum_probs=48.0
Q ss_pred CeeeeccEeeEEeeC-------------CcEEEEcccccCCCCCCC-CceeeC-------CCCeEEEec-----------
Q 038631 63 NRFQVGDTIRFKYKK-------------DSVMEVTDKEYKKCNSTH-PIFFSN-------TGNTAFRLD----------- 110 (185)
Q Consensus 63 ~tF~vGD~LvF~y~~-------------hsV~~V~~~~Y~~C~~s~-pi~~~~-------~G~~~v~L~----------- 110 (185)
..+++||.|-+--.. ..++.|++++|++|+... +...+. .|..+|++.
T Consensus 50 i~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~e~y~sC~~~~~~~~~~~C~~P~~~~~p~kftikFQ~FSP~p~Gl 129 (182)
T 3czu_B 50 IHVQLNDYVDIICPHYEDHSVADAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGK 129 (182)
T ss_dssp EEECTTCEEEEECCCCC--CCCGGGSCCEEEEEECHHHHHHTCCCCGGGEEEEECCTTCTTSCCEEEEECCSCCSCTTSC
T ss_pred EEeccCCEEEEECCCCCCCCCCCCCceEEEEEEECHHHhhhccCCCCCcEEEEeCCCCCCCCCcEEEEEEEEcCCCCCCe
Confidence 468899999887542 137789999999998764 332221 233334321
Q ss_pred --Ccc-cEEEEeCC----CCCCCCCCeEEEEEecCCC
Q 038631 111 --HPG-PFYFISGA----SGHCEKGQRMIIKVMYHEE 140 (185)
Q Consensus 111 --~~G-~~YFiCgv----~~HC~~GmKl~I~V~~~~~ 140 (185)
++| .||||+.- +|.| ||+.|.|.....
T Consensus 130 EF~pG~dYY~ISts~~~~gg~C---mrL~v~V~~k~~ 163 (182)
T 3czu_B 130 EFKEGHSYYYISKPIHQHEDRC---LRLKVTVSGKIT 163 (182)
T ss_dssp CCCTTCEEEEEEEESSSCCCSC---CEEEEEECC---
T ss_pred eEeCCCeEEEEEccCCCCCCcc---eEEEEEEecCCC
Confidence 567 58888753 4566 999999975554
No 37
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A
Probab=96.45 E-value=0.0062 Score=44.08 Aligned_cols=64 Identities=13% Similarity=0.185 Sum_probs=41.2
Q ss_pred CCeeeeccEeeEEeeC-----CcEEEEcccccCCCCCCCCceeeCCC-CeEEEe--cCcccEEEEeCCCCCCCC-CCeEE
Q 038631 62 ENRFQVGDTIRFKYKK-----DSVMEVTDKEYKKCNSTHPIFFSNTG-NTAFRL--DHPGPFYFISGASGHCEK-GQRMI 132 (185)
Q Consensus 62 ~~tF~vGD~LvF~y~~-----hsV~~V~~~~Y~~C~~s~pi~~~~~G-~~~v~L--~~~G~~YFiCgv~~HC~~-GmKl~ 132 (185)
..+++.||.+.|.+.+ |++. +.... .......| ...+++ +++|.++|.|.. ||.. +|+..
T Consensus 39 ~i~v~~G~~V~~~~~n~d~~~H~~~-i~~~~--------~~~~i~pG~~~~~~f~~~~~G~y~~~C~~--~~~~~~M~g~ 107 (112)
T 1iby_A 39 TLVVKKGDAVKVVVENKSPISEGFS-IDAFG--------VQEVIKAGETKTISFTADKAGAFTIWCQL--HPKNIHLPGT 107 (112)
T ss_dssp EEEEETTCEEEEEEEECSSSCEEEE-EGGGT--------EEEEECTTCEEEEEEECCSCEEEEEBCSS--SCTTTBCCEE
T ss_pred EEEEeCCCEEEEEEEECCCCeEEEE-EcCCC--------ceeEeCCCCEEEEEEECCCCEEEEEECCC--CCchHHCEEE
Confidence 3588999999998864 4433 22111 01112223 334444 899999999987 6743 49999
Q ss_pred EEEe
Q 038631 133 IKVM 136 (185)
Q Consensus 133 I~V~ 136 (185)
|.|.
T Consensus 108 i~V~ 111 (112)
T 1iby_A 108 LNVV 111 (112)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9986
No 38
>1shx_A Ephrin-A5; ephrin signaling, hormone-growth factor complex; HET: NAG; 2.10A {Mus musculus} SCOP: b.6.1.5 PDB: 1shw_A* 3mx0_B*
Probab=96.27 E-value=0.0084 Score=46.84 Aligned_cols=74 Identities=19% Similarity=0.283 Sum_probs=48.5
Q ss_pred CeeeeccEeeEEeeC------------CcEEEEcccccCCCCCCCCc-eeeC-------CCCeEEEec------------
Q 038631 63 NRFQVGDTIRFKYKK------------DSVMEVTDKEYKKCNSTHPI-FFSN-------TGNTAFRLD------------ 110 (185)
Q Consensus 63 ~tF~vGD~LvF~y~~------------hsV~~V~~~~Y~~C~~s~pi-~~~~-------~G~~~v~L~------------ 110 (185)
...++||.|-+--+. ..+..|++++|++|+..... ..+. .|+.+|++.
T Consensus 23 i~V~i~D~lDIiCP~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFq~fsP~p~G~E 102 (138)
T 1shx_A 23 IDVCINDYLDVFCPHYEDSVPEDKTERYVLYMVNFDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGFE 102 (138)
T ss_dssp EEECTTCEEEEECCCCCTTCCSTTCCCEEEEEECHHHHHTTCSSSSEEEEEEECCTTCTTSSCEEEEECCSCCSSTTCCC
T ss_pred EEecCCCEEEEECCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCCEEEEeCCCCCCCCCeEEEEEEEEcCCCCCcee
Confidence 468889999887542 13788999999999875432 2221 144444321
Q ss_pred -Ccc-cEEEEeCC-----CCCCCCCCeEEEEEecCC
Q 038631 111 -HPG-PFYFISGA-----SGHCEKGQRMIIKVMYHE 139 (185)
Q Consensus 111 -~~G-~~YFiCgv-----~~HC~~GmKl~I~V~~~~ 139 (185)
++| .||||++- ++-| |||+|.|.+..
T Consensus 103 F~pG~~YY~ISts~~~~~g~~C---lrL~V~V~p~~ 135 (138)
T 1shx_A 103 FRPGREYFYISSAIPDNGRRSC---LKLKVFVRPTN 135 (138)
T ss_dssp CCTTEEEEEEEEESSCCSCSCC---CEEEEEECCTT
T ss_pred ecCCCeEEEEEcCCCCCCCCce---eEEEEEEEccc
Confidence 477 58888753 2446 99999997543
No 39
>3d12_B Ephrin-B3; beta propeller, protein-receptor complex, envelope protein, glycoprotein, hemagglutinin, hydrolase, membrane, signal-AN transmembrane; HET: NAG BMA MAN BGC LXZ NGA GL0 GLC LXB NGZ GXL; 3.00A {Mus musculus}
Probab=96.26 E-value=0.0055 Score=48.05 Aligned_cols=73 Identities=18% Similarity=0.421 Sum_probs=49.2
Q ss_pred eeeeccEeeEEeeC--------------CcEEEEcccccCCCCCC-CCceee----CCCCeEEEec-------------C
Q 038631 64 RFQVGDTIRFKYKK--------------DSVMEVTDKEYKKCNST-HPIFFS----NTGNTAFRLD-------------H 111 (185)
Q Consensus 64 tF~vGD~LvF~y~~--------------hsV~~V~~~~Y~~C~~s-~pi~~~----~~G~~~v~L~-------------~ 111 (185)
..++||.|-+--+. ..+..|++++|++|+.. .+...+ ..+..+|++. +
T Consensus 23 ~V~i~D~ldIiCP~~~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~~~kft~kFq~fsP~p~G~EF~ 102 (141)
T 3d12_B 23 YPQIGDRLDLLCPRARPPGPHSSPSYEFYKLYLVEGAQGRRCEAPPAPNLLLTCDRPDLDLRFTIKFQEYSPNLWGHEFR 102 (141)
T ss_dssp CCCTTCEEEEEECCCSSCCTTCCSSCCCCEEEEECSHHHHTTBCCSSCEEEEECCCSSSCEEEEEESSSCCSCCSCCCCC
T ss_pred EecCCCEEEEECCCCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCeEEEEeCCCCCCeEEEEEEEEcCCCCCceeee
Confidence 57788999887542 13788999999999886 343322 1233333221 4
Q ss_pred cc-cEEEEeCC-----------CCCCCC-CCeEEEEEe
Q 038631 112 PG-PFYFISGA-----------SGHCEK-GQRMIIKVM 136 (185)
Q Consensus 112 ~G-~~YFiCgv-----------~~HC~~-GmKl~I~V~ 136 (185)
+| .||||+.- +|-|.. .|||.|.|.
T Consensus 103 pG~~YY~ISts~G~~~gl~~~~gG~C~t~~Mkl~i~V~ 140 (141)
T 3d12_B 103 SHHDYYIIATSDGTREGLESLQGGVCLTRGMKVLLRVG 140 (141)
T ss_dssp TTCEEEEEECSCSSTTTTTCCBCSHHHHTCCEEEEECC
T ss_pred CCCeEEEEecCCCCcccccccCCCccccceEEEEEEec
Confidence 66 58888864 357865 899999985
No 40
>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B*
Probab=95.71 E-value=0.021 Score=43.71 Aligned_cols=65 Identities=20% Similarity=0.251 Sum_probs=43.5
Q ss_pred CCeeeeccEeeEEeeC----CcEEEEcccccCCCCCCCCceeeCCC---CeEEEecCcccEEEEeCC---CCCCCCCCeE
Q 038631 62 ENRFQVGDTIRFKYKK----DSVMEVTDKEYKKCNSTHPIFFSNTG---NTAFRLDHPGPFYFISGA---SGHCEKGQRM 131 (185)
Q Consensus 62 ~~tF~vGD~LvF~y~~----hsV~~V~~~~Y~~C~~s~pi~~~~~G---~~~v~L~~~G~~YFiCgv---~~HC~~GmKl 131 (185)
.-++.+||.+.|...+ |+.. +.+... .....-| ...++.+++|.|+|.|.. .+| .+|+.
T Consensus 61 ~l~Vp~G~~V~~~vts~DV~Hsf~-ip~~~~--------k~d~~PG~~~~~~~~~~~~G~y~~~C~e~CG~~H--~~M~g 129 (135)
T 2cua_A 61 PIEVPQGAEIVFKITSPDVIHGFH-VEGTNI--------NVEVLPGEVSTVRYTFKRPGEYRIICNQYCGLGH--QNMFG 129 (135)
T ss_dssp SEEEETTSEEEEEEEBSSSCEEEE-ETTSSC--------EEEECBTBCEEEEEECCSCEEEEEECCSCCSTTS--TTCEE
T ss_pred EEEEcCCCEEEEEEEeCCccceEE-ecCCCc--------eeEeCCCCcEEEEEEcCCCEEEEEECcccCCCCc--CCCEE
Confidence 4689999999999875 4432 211110 0111223 347788999999999987 455 78999
Q ss_pred EEEEec
Q 038631 132 IIKVMY 137 (185)
Q Consensus 132 ~I~V~~ 137 (185)
.|.|.+
T Consensus 130 ~v~V~~ 135 (135)
T 2cua_A 130 TIVVKE 135 (135)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 999863
No 41
>2wo3_B Ephrin-A2; transferase-signaling protein complex, EFN, EPHA4, KINA ephrin, complex, membrane, cell surface receptor, tyrosine- kinase, glycoprotein; HET: NAG; 2.35A {Homo sapiens}
Probab=95.48 E-value=0.041 Score=43.78 Aligned_cols=74 Identities=18% Similarity=0.330 Sum_probs=47.6
Q ss_pred CeeeeccEeeEEeeC---C----------cEEEEcccccCCCCCCCC-ceeeC-------CCCeEEEec-----------
Q 038631 63 NRFQVGDTIRFKYKK---D----------SVMEVTDKEYKKCNSTHP-IFFSN-------TGNTAFRLD----------- 110 (185)
Q Consensus 63 ~tF~vGD~LvF~y~~---h----------sV~~V~~~~Y~~C~~s~p-i~~~~-------~G~~~v~L~----------- 110 (185)
..+++||.|-+--+. + .++.|++++|++|+.... ...+. .|+.+|++.
T Consensus 32 i~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~~~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFQ~fSP~p~G~ 111 (157)
T 2wo3_B 32 VEVSINDYLDIYCPHYGAPLPPAERMEHYVLYMVNGEGHASCDHRQRGFKRWECNRPAAPGGPLKFSEKFQLFTPFSLGF 111 (157)
T ss_dssp EEECTTCEEEEECCCCCSSCCCGGGSCCEEEEEECHHHHHHTCCTTSEEEEEEECCTTCTTSSCEEEEECCSSCSSTTSC
T ss_pred EEeccCCEEEEECCCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCCEEEEeCCCCCCCCCeEEEEEEEECCCCCCCe
Confidence 368889999887542 1 278999999999988653 22221 133334221
Q ss_pred --Ccc-cEEEEeCC-----CCCCCCCCeEEEEEecCC
Q 038631 111 --HPG-PFYFISGA-----SGHCEKGQRMIIKVMYHE 139 (185)
Q Consensus 111 --~~G-~~YFiCgv-----~~HC~~GmKl~I~V~~~~ 139 (185)
+|| .||||+.- ++-| |||+|.|....
T Consensus 112 EF~pG~~YY~ISTS~g~~~gg~C---~rlkV~V~~~~ 145 (157)
T 2wo3_B 112 EFRPGHEYYYISATPPNAVDRPC---LRLKVYVRPTQ 145 (157)
T ss_dssp CCCTTCEEEEEEECTTCSCCTTC---CEEEEEECCCC
T ss_pred eeeCCCeEEEEEecCCCCCCCcc---eeEEEEEEcCC
Confidence 466 58888864 3456 68888886544
No 42
>2vsm_B Ephrin-B2; developmental protein, henipavirus, neurogenesis, glycoprotein, paramyxovirus, envelope protein, cell surface receptor, hendra, virion; HET: NAG; 1.80A {Homo sapiens} PDB: 2wo2_B* 2i85_A 3gxu_B 2vsk_B 2hle_B 1kgy_E
Probab=94.75 E-value=0.021 Score=44.55 Aligned_cols=74 Identities=20% Similarity=0.387 Sum_probs=49.3
Q ss_pred eeeeccEeeEEeeC-----------CcEEEEcccccCCCCCCC-Cceee----CCCCeEEEec-------------Ccc-
Q 038631 64 RFQVGDTIRFKYKK-----------DSVMEVTDKEYKKCNSTH-PIFFS----NTGNTAFRLD-------------HPG- 113 (185)
Q Consensus 64 tF~vGD~LvF~y~~-----------hsV~~V~~~~Y~~C~~s~-pi~~~----~~G~~~v~L~-------------~~G- 113 (185)
..++||.|-+--+. ..+..|++++|+.|+... +...+ ..+...+++. ++|
T Consensus 24 ~v~i~D~ldIiCP~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~~~kft~kFq~fsP~~~G~eF~~g~ 103 (140)
T 2vsm_B 24 YPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCAKPDQDIKFTIKFQEFSPNLWGLEFQKNK 103 (140)
T ss_dssp CCCTTCEEEEEECCCC---CCCCCBEEEEEECHHHHHHTBCCTTCCCSEEECCTTSCEEEEEESSSCCSCSSCCCCCTTE
T ss_pred EecCCCEEEEECCCCCCCCCCCceEEEEEEECHHHhhhcccCCCCcEEEEecCCCCCEEEEEEEEecCCCCCcccccCCC
Confidence 34679999887652 147889999999998763 32222 1344444332 566
Q ss_pred cEEEEeCCC-----------CCCCC-CCeEEEEEec
Q 038631 114 PFYFISGAS-----------GHCEK-GQRMIIKVMY 137 (185)
Q Consensus 114 ~~YFiCgv~-----------~HC~~-GmKl~I~V~~ 137 (185)
.||||+.-. |-|.. .|||.|.|..
T Consensus 104 ~YY~Ists~g~~~gl~~~~gG~C~t~~mkl~i~V~~ 139 (140)
T 2vsm_B 104 DYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGH 139 (140)
T ss_dssp EEEEECCCCBSGGGTTCCBSHHHHHSCCEEEEEETC
T ss_pred ceEEEecCCCCccccccccCCccccceEEEEEEecC
Confidence 578887632 47864 8999999964
No 43
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Probab=93.78 E-value=0.14 Score=45.06 Aligned_cols=75 Identities=15% Similarity=0.204 Sum_probs=49.4
Q ss_pred CCeeeeccEeeEEeeC-----CcEEEEcccccCCCCCCCCceeeCCCCeEEEecCcccEEEEeCCCCCCCCCCeEEEEEe
Q 038631 62 ENRFQVGDTIRFKYKK-----DSVMEVTDKEYKKCNSTHPIFFSNTGNTAFRLDHPGPFYFISGASGHCEKGQRMIIKVM 136 (185)
Q Consensus 62 ~~tF~vGD~LvF~y~~-----hsV~~V~~~~Y~~C~~s~pi~~~~~G~~~v~L~~~G~~YFiCgv~~HC~~GmKl~I~V~ 136 (185)
..+++.||+++|++.+ |++..-.......|-... ..+-...|+++++|++||.|.+.+|=..||+..|.|.
T Consensus 56 ~i~v~~Gd~v~~~~~N~~~~~h~~~~~g~~~~~~~~i~p----G~~~~~~f~~~~~Gt~~y~~~~~~h~~~Gm~G~i~V~ 131 (447)
T 2dv6_A 56 TLVVHEGETVQVNLVNGEGAQHDVVVDQYAARSAIVNGK----NASSTFSFVASKVGEFNYYCSIAGHRQAGMEGNIQVL 131 (447)
T ss_dssp CEEEETTCEEEEEEECSSSSCBCCEETTTTEECCCBCST----TBEEEEEEECCSCEEEEEECCSTTHHHHTCEEEEEEE
T ss_pred eEEEcCCCEEEEEEEcCCCCceEEEEccCCcccceecCC----CCeEEEEEEcCCCEEEEEEeCCCChhhCCCEEEEEEe
Confidence 4688999999998864 444321111112232211 1111235666889999999999999888999999998
Q ss_pred cCCC
Q 038631 137 YHEE 140 (185)
Q Consensus 137 ~~~~ 140 (185)
...+
T Consensus 132 ~~~~ 135 (447)
T 2dv6_A 132 PGNR 135 (447)
T ss_dssp SSCC
T ss_pred CCcc
Confidence 6554
No 44
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=90.71 E-value=0.26 Score=46.44 Aligned_cols=65 Identities=12% Similarity=0.141 Sum_probs=42.1
Q ss_pred CeeeeccEeeEEeeC--------CcEEEEcccccCCCCCCCCceeeCCC---CeEEEecCcccEEEEeCC---CCCCCCC
Q 038631 63 NRFQVGDTIRFKYKK--------DSVMEVTDKEYKKCNSTHPIFFSNTG---NTAFRLDHPGPFYFISGA---SGHCEKG 128 (185)
Q Consensus 63 ~tF~vGD~LvF~y~~--------hsV~~V~~~~Y~~C~~s~pi~~~~~G---~~~v~L~~~G~~YFiCgv---~~HC~~G 128 (185)
.++++||++.|...+ |++. +..... .....-| ...|+.+++|.|||.|.. ..| .|
T Consensus 515 I~V~~Gd~V~~~ltN~d~~~Dv~Hgf~-ip~~gv--------~~~i~PG~t~t~~Fta~~pGtY~yhC~e~Cg~~H--~g 583 (595)
T 1fwx_A 515 FTVKEGDEVTVIVTNLDEIDDLTHGFT-MGNYGV--------AMEIGPQMTSSVTFVAANPGVYWYYCQWFCHALH--ME 583 (595)
T ss_dssp EEEETTCEEEEEEEECCCSTTCCEEEE-ETTTTE--------EEEECTTCEEEEEEECCSCEEEEEECCSCCSTTC--TT
T ss_pred EEEECCCEEEEEEEeCCCCCCceeeEE-ecCCCc--------ceeeCCCCeEEEEEECCCCEEEEEECCCCCCCCc--cC
Confidence 578889999999765 2222 211110 0111223 236788999999999984 356 49
Q ss_pred CeEEEEEecC
Q 038631 129 QRMIIKVMYH 138 (185)
Q Consensus 129 mKl~I~V~~~ 138 (185)
|+..|.|.+.
T Consensus 584 M~G~IiV~p~ 593 (595)
T 1fwx_A 584 MRGRMLVEPK 593 (595)
T ss_dssp CEEEEEEECC
T ss_pred CEEEEEEEcC
Confidence 9999999754
No 45
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ...
Probab=90.41 E-value=0.69 Score=36.77 Aligned_cols=32 Identities=19% Similarity=0.322 Sum_probs=25.3
Q ss_pred eEEEecCcccEEEEeCC-CCCCCCCCeEEEEEe
Q 038631 105 TAFRLDHPGPFYFISGA-SGHCEKGQRMIIKVM 136 (185)
Q Consensus 105 ~~v~L~~~G~~YFiCgv-~~HC~~GmKl~I~V~ 136 (185)
..++.+++|.||+.|+. -|+--.+|+..|.|.
T Consensus 135 ~~~~~~kpG~y~g~Cse~CG~~Hs~M~g~V~V~ 167 (168)
T 3s8f_B 135 VRYTFKRPGEYRIICNQYCGLGHQNMFGTIVVK 167 (168)
T ss_dssp EEEECCSCEEEEEECCSCCSTTGGGCEEEEEEE
T ss_pred EEEEeCCCEEEEEECCcCCCCCcCCCEEEEEEe
Confidence 46788999999999985 333335799999986
No 46
>3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} SCOP: b.6.1.1 PDB: 2xv2_A 2xv0_A 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 3n2j_A 2iwe_A 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A ...
Probab=90.22 E-value=4.3 Score=30.77 Aligned_cols=28 Identities=11% Similarity=0.328 Sum_probs=21.0
Q ss_pred eEEEec-----CcccEEEEeCCCCCCCCCCeEEEEEe
Q 038631 105 TAFRLD-----HPGPFYFISGASGHCEKGQRMIIKVM 136 (185)
Q Consensus 105 ~~v~L~-----~~G~~YFiCgv~~HC~~GmKl~I~V~ 136 (185)
.+++++ ++|.|-|+|+ +|= |||-.|.|.
T Consensus 93 ~~vtf~~~~l~~~G~y~f~C~--gH~--~M~G~v~V~ 125 (125)
T 3fsa_A 93 DSVTFDVSKLKEGEQYMFFCA--AHA--AMKGTLTLK 125 (125)
T ss_dssp EEEEEEGGGC---CCEEEECS--SST--TCEEEEEEC
T ss_pred EEEEEeCcCcCCCccEEEEcC--CCC--CcEEEEEEC
Confidence 455554 5699999999 886 999999873
No 47
>3hei_B Ephrin-A1; EPH receptor tyrosine kinase, cell membrane, disulfi glycoprotein, GPI-anchor, lipoprotein, membrane, ATP-bindin kinase; 2.00A {Homo sapiens} SCOP: b.6.1.0
Probab=89.80 E-value=0.37 Score=37.21 Aligned_cols=73 Identities=19% Similarity=0.316 Sum_probs=45.1
Q ss_pred CeeeeccEeeEEeeC---C----------cEEEEcccccCCCCCCC-CceeeC-------CCCeEEEec-----------
Q 038631 63 NRFQVGDTIRFKYKK---D----------SVMEVTDKEYKKCNSTH-PIFFSN-------TGNTAFRLD----------- 110 (185)
Q Consensus 63 ~tF~vGD~LvF~y~~---h----------sV~~V~~~~Y~~C~~s~-pi~~~~-------~G~~~v~L~----------- 110 (185)
...++||.|-+--+. + .+..|++++|++|+... +...+. .|+.++++.
T Consensus 22 v~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~~~y~~C~~~~~~~~~~~C~~P~~~~~~~kft~kFQ~FSP~p~G~ 101 (132)
T 3hei_B 22 IHVQLNDYVDIICPHYEDHSVADAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGK 101 (132)
T ss_dssp EEECTTCEEEEECCCCCTTSSCGGGCCCEEEEEECHHHHHHTCCSCGGGEEEEECCTTCTTSCCEEEEECCSCCSCTTSC
T ss_pred EEeCCCCeEEEECCCCCCCCCCCCCccEEEEEEeCHHHhccccCCCCCcEEEEeCCCCCCCCceEEEEEEEEcCCCCCCe
Confidence 467889999876542 1 36789999999999765 333321 234444321
Q ss_pred --Ccc-cEEEEeCCCCCCCCC--CeEEEEEe
Q 038631 111 --HPG-PFYFISGASGHCEKG--QRMIIKVM 136 (185)
Q Consensus 111 --~~G-~~YFiCgv~~HC~~G--mKl~I~V~ 136 (185)
++| .||||+. +.|=..+ +||.|.|.
T Consensus 102 EF~pG~~YY~ISt-~~~~~~~~cl~l~v~v~ 131 (132)
T 3hei_B 102 EFKEGHSYYYISK-PIHQHEDRCLRLKVTVK 131 (132)
T ss_dssp CCCTTCEEEEEEE-ESSCCCCSCCEEEEEEC
T ss_pred eecCCCcEEEEEc-cCCCCCCcceEEEEEEE
Confidence 567 5777776 3231112 78888774
No 48
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=86.18 E-value=0.71 Score=43.87 Aligned_cols=31 Identities=19% Similarity=0.296 Sum_probs=25.3
Q ss_pred eEEEecCcccEEEEeCCCCCCCC---CCeEEEEEec
Q 038631 105 TAFRLDHPGPFYFISGASGHCEK---GQRMIIKVMY 137 (185)
Q Consensus 105 ~~v~L~~~G~~YFiCgv~~HC~~---GmKl~I~V~~ 137 (185)
..|+.++||.|||+|+. +|-. +|+..|.|.+
T Consensus 604 vtFtadkPGvY~y~CSE--~CGa~Hs~M~G~ViVEP 637 (638)
T 3sbq_A 604 ITFVADKPGLHWYYCSW--FCHALHMEMVGRMMVEP 637 (638)
T ss_dssp EEEECCSCEEEEEECCS--CCSTTCTTCEEEEEEEC
T ss_pred EEEEcCCCEEEEEECCC--cCCCCcccceEEEEEec
Confidence 36778999999999997 5554 5999999974
No 49
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Probab=73.44 E-value=4.6 Score=34.10 Aligned_cols=74 Identities=16% Similarity=0.213 Sum_probs=45.0
Q ss_pred CeeeeccEeeEEeeC-------CcEEEEcccccCCCCCCCCceeeCCC---CeEEEecCcccEEEEeCCCC-----CCCC
Q 038631 63 NRFQVGDTIRFKYKK-------DSVMEVTDKEYKKCNSTHPIFFSNTG---NTAFRLDHPGPFYFISGASG-----HCEK 127 (185)
Q Consensus 63 ~tF~vGD~LvF~y~~-------hsV~~V~~~~Y~~C~~s~pi~~~~~G---~~~v~L~~~G~~YFiCgv~~-----HC~~ 127 (185)
.+++.||++++++.+ |.+..-.....+.- .+.....-| ...|+.+++|++||-|...+ |=..
T Consensus 66 i~~~~Gd~v~v~~~N~~~~~h~Hg~~~~~~~~~~~~---~~~~~i~PG~~~~y~f~~~~~Gt~~yH~h~~~~~~~~~~~~ 142 (333)
T 1mzy_A 66 MIVHEGDYVELTLINPPENTMPHNIDFHAATGALGG---GGLTLINPGEKVVLRFKATRAGAFVYHCAPGGPMIPWHVVS 142 (333)
T ss_dssp EEEETTCEEEEEEEECTTCCSCBCCEETTSCSGGGG---GGGCCBCTTEEEEEEEECCSCEEEEEECCCSTTHHHHHHHT
T ss_pred EEecCCCEEEEEEEECCCCcccccceecCCCCCCCC---CceeEeCCCCEEEEEEECCCCEEEEEeecCCcccchhhhhC
Confidence 468899999998864 34432111111000 011111222 23677789999999998764 6678
Q ss_pred CCeEEEEEecCC
Q 038631 128 GQRMIIKVMYHE 139 (185)
Q Consensus 128 GmKl~I~V~~~~ 139 (185)
||.-.+.|.+..
T Consensus 143 Gl~G~~iV~~~~ 154 (333)
T 1mzy_A 143 GMAGCIMVLPRD 154 (333)
T ss_dssp TCEEEEEEECTT
T ss_pred CCEEEEEEccCc
Confidence 999999997543
No 50
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...
Probab=72.85 E-value=3.2 Score=35.09 Aligned_cols=37 Identities=19% Similarity=0.259 Sum_probs=30.7
Q ss_pred eEEEecCcccEEEEeCCCCCC-CCCCeEEEEEecCCCC
Q 038631 105 TAFRLDHPGPFYFISGASGHC-EKGQRMIIKVMYHEES 141 (185)
Q Consensus 105 ~~v~L~~~G~~YFiCgv~~HC-~~GmKl~I~V~~~~~p 141 (185)
..|+.+.+|.++|.|....|+ +.||.-.+.|....-+
T Consensus 285 vlv~~~~pG~y~~~~h~~~~~~~~G~~~~~~V~~~~~~ 322 (336)
T 1oe1_A 285 ALYTFKQPGVYAYLNHNLIEAFELGAAGHIKVEGKWND 322 (336)
T ss_dssp EEEECCSCEEEEEEESSHHHHHTTSCEEEEEEESCCCT
T ss_pred EEEEcCCCceEEEEechhhccccCCCeEEEEECCCCCh
Confidence 356778899999999988898 8999999999865543
No 51
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}
Probab=68.42 E-value=7.5 Score=32.27 Aligned_cols=78 Identities=17% Similarity=0.116 Sum_probs=45.2
Q ss_pred CeeeeccEeeEEeeC-----CcEEE--EcccccCCCC--CCCCceeeCCCCeEEEecCcccEEEEeCCC---CCCCCCCe
Q 038631 63 NRFQVGDTIRFKYKK-----DSVME--VTDKEYKKCN--STHPIFFSNTGNTAFRLDHPGPFYFISGAS---GHCEKGQR 130 (185)
Q Consensus 63 ~tF~vGD~LvF~y~~-----hsV~~--V~~~~Y~~C~--~s~pi~~~~~G~~~v~L~~~G~~YFiCgv~---~HC~~GmK 130 (185)
.+++.||+++.++.+ |++.. +.....|.=. ...++....+-...++.+.+|++||-|-.. .|=..||.
T Consensus 68 i~~~~Gd~v~v~~~N~~~~~~~iH~HG~~~~~~DG~p~~~~~~i~PG~~~~y~f~~~~~Gt~~yH~H~~~~~~~~~~Gl~ 147 (288)
T 3gdc_A 68 LWAREGDALRIHFTNAGAHPHTIHFHGVHRATMDGTPGIGAGSIAPGQSFTYEFDATPFGTHLYHCHQSPLAPHIAKGLY 147 (288)
T ss_dssp EEEETTCEEEEEEEECSSSCBCCEESSCCCGGGSCCTTSTTCSBCTTCEEEEEEECCSCEEEEEECCCSSHHHHHHTTCE
T ss_pred EEEeCCCEEEEEEEeCCCCcccEEeccccccccCCCCCccceeECCCCEEEEEEEcCCCccEEEEecCcchHHHHhCcCe
Confidence 578999999999864 23221 1111111100 001111111112367778999999999875 35568999
Q ss_pred EEEEEecCCC
Q 038631 131 MIIKVMYHEE 140 (185)
Q Consensus 131 l~I~V~~~~~ 140 (185)
-.+.|.+...
T Consensus 148 G~liV~~~~~ 157 (288)
T 3gdc_A 148 GGFIVEPKEG 157 (288)
T ss_dssp EEEEEECSSC
T ss_pred EEEEEeCCcc
Confidence 9999976544
No 52
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...
Probab=67.98 E-value=7.2 Score=32.84 Aligned_cols=74 Identities=18% Similarity=0.231 Sum_probs=44.1
Q ss_pred CeeeeccEeeEEeeC-------CcEEEEcccccCCCCCCCCceeeCCCC---eEEEecCcccEEEEeCCCC----CCCCC
Q 038631 63 NRFQVGDTIRFKYKK-------DSVMEVTDKEYKKCNSTHPIFFSNTGN---TAFRLDHPGPFYFISGASG----HCEKG 128 (185)
Q Consensus 63 ~tF~vGD~LvF~y~~-------hsV~~V~~~~Y~~C~~s~pi~~~~~G~---~~v~L~~~G~~YFiCgv~~----HC~~G 128 (185)
.+++.||++++++.+ |++..=. .... +...+......|. ..|+++.+|++||-|...+ |=..|
T Consensus 67 i~v~~Gd~v~v~~~N~~~~~~~h~~~~h~-~~~~--~~~~~~~~i~pG~~~~y~f~~~~~Gt~~yH~h~~~~~~~~~~~G 143 (336)
T 1oe1_A 67 LVVHEGDYVQLTLVNPATNAMPHNVDFHG-ATGA--LGGAKLTNVNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVSG 143 (336)
T ss_dssp EEEETTCEEEEEEEECTTCCSCBCCEETT-SCSG--GGGGGGCCBCTTEEEEEEEECCSCEEEEEECCCTTCHHHHHHTT
T ss_pred EEEcCCCEEEEEEEcCCCCCccccceECC-CCCC--CCCcceEEeCCCCEEEEEEECCCCeEEEEecCCCCchhHHHhCC
Confidence 467899999988864 3333211 0000 0001111112232 3667789999999998754 45689
Q ss_pred CeEEEEEecCC
Q 038631 129 QRMIIKVMYHE 139 (185)
Q Consensus 129 mKl~I~V~~~~ 139 (185)
|.-.+.|....
T Consensus 144 l~G~liV~~~~ 154 (336)
T 1oe1_A 144 MSGTLMVLPRD 154 (336)
T ss_dssp CEEEEEEECTT
T ss_pred CeEEEEEecCc
Confidence 99999998543
No 53
>3cg8_A Laccase; oxidoreductase, multicopper blue protein; HET: PG4; 2.68A {Streptomyces coelicolor}
Probab=65.63 E-value=10 Score=32.51 Aligned_cols=32 Identities=13% Similarity=0.210 Sum_probs=28.0
Q ss_pred cCcccEEEEeCCCCCCCCCCeEEEEEecCCCC
Q 038631 110 DHPGPFYFISGASGHCEKGQRMIIKVMYHEES 141 (185)
Q Consensus 110 ~~~G~~YFiCgv~~HC~~GmKl~I~V~~~~~p 141 (185)
+.||.++|-|-+..|=+.||...+.|......
T Consensus 279 ~~pG~w~~HCHi~~H~~~GM~g~~~V~~~~~~ 310 (343)
T 3cg8_A 279 VGAGAWMYHCHVQSHSDMGMVGLFLVKKPDGT 310 (343)
T ss_dssp TCSEEEEEEECSHHHHHTTCEEEEEEECTTSC
T ss_pred CCCeeEEEeCCCHHHHhccCcEEEEEecCCCC
Confidence 57999999999999999999999999866543
No 54
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=63.27 E-value=2.6 Score=30.08 Aligned_cols=24 Identities=25% Similarity=0.556 Sum_probs=18.9
Q ss_pred ccCCeeeeccEeeEEeeCCcEEEE
Q 038631 60 ASENRFQVGDTIRFKYKKDSVMEV 83 (185)
Q Consensus 60 a~~~tF~vGD~LvF~y~~hsV~~V 83 (185)
+..+..++||.|+|+|...+..+|
T Consensus 73 v~~~~L~~GD~lvF~~~~~~~f~V 96 (104)
T 1yel_A 73 VKDNNLEDGKYLQFIYDRDRTFYV 96 (104)
T ss_dssp HHHHTCCTTCEEEEEECSSSEEEE
T ss_pred HHHcCCCCCCEEEEEEcCCCeEEE
Confidence 446789999999999988655554
No 55
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Probab=57.99 E-value=8.9 Score=32.29 Aligned_cols=34 Identities=15% Similarity=0.239 Sum_probs=29.6
Q ss_pred EEEecCcccEEEEeCCCCCC-CCCCeEEEEEecCC
Q 038631 106 AFRLDHPGPFYFISGASGHC-EKGQRMIIKVMYHE 139 (185)
Q Consensus 106 ~v~L~~~G~~YFiCgv~~HC-~~GmKl~I~V~~~~ 139 (185)
.|+.+.+|.++|.|-...|+ +.||.-.+.|....
T Consensus 286 ~v~a~~pG~y~~~ch~~~h~~~~Gm~~~~~v~~~~ 320 (333)
T 1mzy_A 286 LYKFLQPGVYAYVNHNLIEAVHKGATAHVLVEGEW 320 (333)
T ss_dssp EEECCSCEEEEEEESSHHHHHTTCCEEEEEEESCC
T ss_pred EEEcCCCEEEEEecChhhhHhhCCCEEEEEEcCCC
Confidence 56778899999999999999 99999999997644
No 56
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A
Probab=56.38 E-value=9.3 Score=32.29 Aligned_cols=34 Identities=24% Similarity=0.369 Sum_probs=26.7
Q ss_pred EEEecCcccEEEEeCCC---CCCCCCCeEEEEEecCC
Q 038631 106 AFRLDHPGPFYFISGAS---GHCEKGQRMIIKVMYHE 139 (185)
Q Consensus 106 ~v~L~~~G~~YFiCgv~---~HC~~GmKl~I~V~~~~ 139 (185)
.|+.+.+|++||-|... .|=..||.-.+.|....
T Consensus 122 ~f~~~~~Gt~wyH~h~~~~~~~~~~Gl~G~~iV~~~~ 158 (327)
T 1kbv_A 122 SFKALQPGLYIYHCAVAPVGMHIANGMYGLILVEPKE 158 (327)
T ss_dssp EEECCSCEEEEEECCCSSHHHHHHTTCEEEEEEECTT
T ss_pred EEECCCCeEEEEEeCCCChhhhhhcceEEEEEEecCC
Confidence 56678899999999762 45568999999998643
No 57
>2zwn_A Two-domain type laccase; muticopper oxidase, oxidoreductase; 1.70A {Metagenomes}
Probab=52.19 E-value=16 Score=30.93 Aligned_cols=35 Identities=17% Similarity=0.260 Sum_probs=26.3
Q ss_pred eEEEecCcccEEEEeCCCC--CCC-CCCeEEEEEecCC
Q 038631 105 TAFRLDHPGPFYFISGASG--HCE-KGQRMIIKVMYHE 139 (185)
Q Consensus 105 ~~v~L~~~G~~YFiCgv~~--HC~-~GmKl~I~V~~~~ 139 (185)
..|+++.+|++||-|.... |=. .||--.+.|.+..
T Consensus 91 y~f~~~~~Gt~wyH~H~~~~~q~~~~Gl~G~liV~p~~ 128 (339)
T 2zwn_A 91 YKFKADRIGTLWYHCHVNVNEHVGVRGMWGPLIVDPKQ 128 (339)
T ss_dssp EEEECCSCEEEEEECCSSHHHHTTTSCCEEEEEEECSS
T ss_pred EEEECCCCEEEEEEecCCchhhhhcCCceEeEEecCCC
Confidence 3677888999999998643 444 7998888886543
No 58
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}
Probab=49.72 E-value=9.1 Score=33.43 Aligned_cols=34 Identities=24% Similarity=0.348 Sum_probs=26.7
Q ss_pred EEEecCcccEEEEeC---CCCCCCCCCeEEEEEecCC
Q 038631 106 AFRLDHPGPFYFISG---ASGHCEKGQRMIIKVMYHE 139 (185)
Q Consensus 106 ~v~L~~~G~~YFiCg---v~~HC~~GmKl~I~V~~~~ 139 (185)
.|+.+.+|++||-|- ...|=..||...+.|.+..
T Consensus 112 ~f~~~~~Gt~~yH~H~~~~~~~~~~Gl~G~~iv~~~~ 148 (442)
T 2zoo_A 112 NFKALNPGLYIYHCATAPVGMHIANGMYGLILVEPKE 148 (442)
T ss_dssp EEECCSCEEEEEECCCSSHHHHHHTTCEEEEEEECTT
T ss_pred EEEcCCCeEEEEecCCCChHHHHhCccEEEEEEeCCC
Confidence 667788999999994 3456678999999998543
No 59
>1cyx_A CYOA; electron transport; 2.30A {Escherichia coli} SCOP: b.6.1.2 PDB: 1cyw_A
Probab=48.17 E-value=17 Score=29.64 Aligned_cols=63 Identities=19% Similarity=0.296 Sum_probs=39.2
Q ss_pred CeeeeccEeeEEeeCCcEEE---EcccccCCCCCCCCceee-CCC---CeEEEecCcccEEEEeCCCCCCCC---CCeEE
Q 038631 63 NRFQVGDTIRFKYKKDSVME---VTDKEYKKCNSTHPIFFS-NTG---NTAFRLDHPGPFYFISGASGHCEK---GQRMI 132 (185)
Q Consensus 63 ~tF~vGD~LvF~y~~hsV~~---V~~~~Y~~C~~s~pi~~~-~~G---~~~v~L~~~G~~YFiCgv~~HC~~---GmKl~ 132 (185)
-.+.+|+.+.|.-.+.+|+- |.+ + .+... --| ...+..+++|.||..|+. -|.. .|++.
T Consensus 43 l~lP~g~~V~~~lTS~DViHSF~IP~--l-------gvK~daiPGr~n~l~~~~~~pG~y~g~CsE--~CG~~Hs~M~~~ 111 (205)
T 1cyx_A 43 IAFPANTPVYFKVTSNSVMHSFFIPR--L-------GSQIYAMAGMQTRLHLIANEPGTYDGICAE--ICGPGHSGMKFK 111 (205)
T ss_dssp EEEETTSCEEEEEEESSSCEEEEEGG--G-------TEEEEECTTCCEEEEECCSSSEEEEEEECS--CCSTTSTTCCEE
T ss_pred EEEeCCCEEEEEEecCCceeeEEecc--c-------CcEEEecCCceEEEEEEeCCCeEEEEEccc--ccccchhhceEE
Confidence 46778888888887644432 111 1 11111 112 235677899999999985 5544 59999
Q ss_pred EEEe
Q 038631 133 IKVM 136 (185)
Q Consensus 133 I~V~ 136 (185)
|.|.
T Consensus 112 v~vv 115 (205)
T 1cyx_A 112 AIAT 115 (205)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9988
No 60
>2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} SCOP: b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A 1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A* 1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Probab=47.44 E-value=17 Score=30.50 Aligned_cols=74 Identities=16% Similarity=0.249 Sum_probs=44.0
Q ss_pred CeeeeccEeeEEeeC-------CcEEEEcccccCCCCCCCCceeeCCC---CeEEEecCcccEEEEeCCCC----CCCCC
Q 038631 63 NRFQVGDTIRFKYKK-------DSVMEVTDKEYKKCNSTHPIFFSNTG---NTAFRLDHPGPFYFISGASG----HCEKG 128 (185)
Q Consensus 63 ~tF~vGD~LvF~y~~-------hsV~~V~~~~Y~~C~~s~pi~~~~~G---~~~v~L~~~G~~YFiCgv~~----HC~~G 128 (185)
.+++.||++++++.+ |.+..-.....+ + ..+.....-| ...|+++.+|++||-|...+ |=..|
T Consensus 73 i~v~~Gd~v~v~~~N~~~~~~~hg~~~~~~~~~~--~-~~~~~~i~PG~~~~y~~~~~~~Gt~wyH~h~~~~~~~~~~~G 149 (340)
T 2bw4_A 73 MVVHENDYVELRLINPDTNTLLHNIDFHAATGAL--G-GGALTQVNPGEETTLRFKATKPGVFVYHCAPEGMVPWHVTSG 149 (340)
T ss_dssp EEEETTCEEEEEEEECTTCCSCBCCEETTSCSGG--G-GGGGCCBCTTEEEEEEEECCSCEEEEEECCCTTCHHHHHHTT
T ss_pred EEEcCCCEEEEEEEeCCCCCccCcceeCCcCCCC--C-CccceEeCCCCEEEEEEECCCCeEEEEEcCCCCchhhHHhCc
Confidence 467899999998864 333321100000 0 0111111222 23667788999999998764 55689
Q ss_pred CeEEEEEecCC
Q 038631 129 QRMIIKVMYHE 139 (185)
Q Consensus 129 mKl~I~V~~~~ 139 (185)
|.-.+.|....
T Consensus 150 l~G~~iV~~~~ 160 (340)
T 2bw4_A 150 MNGAIMVLPRD 160 (340)
T ss_dssp CEEEEEEECTB
T ss_pred CEEEEEEccCc
Confidence 99999887543
No 61
>1fft_B Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: b.6.1.2 f.17.2.1
Probab=47.39 E-value=47 Score=28.62 Aligned_cols=64 Identities=20% Similarity=0.246 Sum_probs=41.1
Q ss_pred CCeeeeccEeeEEeeCCcEEE---EcccccCCCCCCCCceee-CCCC---eEEEecCcccEEEEeCCCCCCCC---CCeE
Q 038631 62 ENRFQVGDTIRFKYKKDSVME---VTDKEYKKCNSTHPIFFS-NTGN---TAFRLDHPGPFYFISGASGHCEK---GQRM 131 (185)
Q Consensus 62 ~~tF~vGD~LvF~y~~hsV~~---V~~~~Y~~C~~s~pi~~~-~~G~---~~v~L~~~G~~YFiCgv~~HC~~---GmKl 131 (185)
.-.+.+|..+.|.-++.+|.- |.+- .+... --|. ..++.+++|.||..|+. .|.. .|++
T Consensus 152 ~l~lP~g~~V~~~lTS~DViHsf~IP~l---------g~k~DaiPGr~n~~~~~~~~~G~y~g~CsE--~CG~~Hs~M~~ 220 (315)
T 1fft_B 152 EIAFPANTPVYFKVTSNSVMNSFFIPRL---------GSQIYAMAGMQTRLHLIANEPGTYDGISAS--YSGPGFSGMKF 220 (315)
T ss_dssp BCCCCSSSEEEEEECBSSSCEEEEEGGG---------TEEEEECBTSCEEEEEECCSCBCCEEBCCS--CCSTTTTTCCE
T ss_pred eEEEeCCCEEEEEEEeCCccceeeeccc---------CcEEeecCCcceeeEEecCCCeEEEEeccc--cchhhHHhccc
Confidence 456788888888888755432 2111 11111 1122 36778999999999985 5654 5999
Q ss_pred EEEEe
Q 038631 132 IIKVM 136 (185)
Q Consensus 132 ~I~V~ 136 (185)
.|.|.
T Consensus 221 ~v~vv 225 (315)
T 1fft_B 221 KAIAT 225 (315)
T ss_dssp ECCBC
T ss_pred eEEEe
Confidence 99888
No 62
>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3
Probab=46.36 E-value=2.8 Score=35.28 Aligned_cols=32 Identities=16% Similarity=0.239 Sum_probs=20.4
Q ss_pred EEEecCcccEEEEeCCCCCCCCCCeEEEEEec
Q 038631 106 AFRLDHPGPFYFISGASGHCEKGQRMIIKVMY 137 (185)
Q Consensus 106 ~v~L~~~G~~YFiCgv~~HC~~GmKl~I~V~~ 137 (185)
.|+.+.+|.++|-|-+..|-+.||...+.|..
T Consensus 269 ~~~~~~pG~~~~hch~~~H~~~GM~~~~~V~~ 300 (306)
T 1sdd_A 269 NMTVSPEGRWTIASLIPRHFQAGMQAYIDIKN 300 (306)
T ss_dssp -------CCCCCBCCSTTTGGGTCBCCC----
T ss_pred EEEcCCCeEEEEEeCChHHHhcCCeEEEEEec
Confidence 56667899999999999999999999998874
No 63
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*
Probab=45.60 E-value=17 Score=31.18 Aligned_cols=33 Identities=18% Similarity=0.370 Sum_probs=25.9
Q ss_pred eEEEecCcccEEEEeCCCCCCC---CCCeEEEEEecCC
Q 038631 105 TAFRLDHPGPFYFISGASGHCE---KGQRMIIKVMYHE 139 (185)
Q Consensus 105 ~~v~L~~~G~~YFiCgv~~HC~---~GmKl~I~V~~~~ 139 (185)
..++.++||.||..|+. -|. ..|++.|.|.+..
T Consensus 231 ~~~~~~~~G~y~g~CsE--~CG~~Hs~M~~~v~vvs~~ 266 (298)
T 3hb3_B 231 LWFSVDQEGVYFGQCSE--LCGINHAYMPIVVKAVSQE 266 (298)
T ss_dssp EEEECSSSEEEEECCCS--CCSTTTTSCCEEEEEECHH
T ss_pred EEEEeCCCEEEEEEccc--ccCcCccCCeeEEEEEcHH
Confidence 36788999999999985 454 4599999998653
No 64
>3kw8_A Laccase, putative copper oxidase; two-domain laccase, oxidoreductase, multicopper blue protein; HET: PG4 PGE; 2.29A {Streptomyces coelicolor} PDB: 4gxf_A* 4gy4_A*
Probab=45.59 E-value=13 Score=30.53 Aligned_cols=31 Identities=13% Similarity=0.248 Sum_probs=27.7
Q ss_pred CcccEEEEeCCCCCCCCCCeEEEEEecCCCC
Q 038631 111 HPGPFYFISGASGHCEKGQRMIIKVMYHEES 141 (185)
Q Consensus 111 ~~G~~YFiCgv~~HC~~GmKl~I~V~~~~~p 141 (185)
.||.++|-|-+..|=+.||...+.|.+...+
T Consensus 239 npG~w~~HCH~~~H~~~GM~g~~~V~~~~~~ 269 (276)
T 3kw8_A 239 GAGAWMYHCHVQSHSDMGMVGLFLVKKPDGT 269 (276)
T ss_dssp CSEEEEEEECSHHHHHTTCEEEEEEECTTSC
T ss_pred CCCeEEEECCCchHhhCCCeEEEEEeCCCCC
Confidence 5899999999999999999999999876543
No 65
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}
Probab=44.93 E-value=8 Score=32.10 Aligned_cols=32 Identities=25% Similarity=0.362 Sum_probs=28.1
Q ss_pred EEEecCcccEEEEeCCCCCCCCCCeEEEEEec
Q 038631 106 AFRLDHPGPFYFISGASGHCEKGQRMIIKVMY 137 (185)
Q Consensus 106 ~v~L~~~G~~YFiCgv~~HC~~GmKl~I~V~~ 137 (185)
.++.+.||.+.|.|-+..|=+.||.-.++|.+
T Consensus 257 ~~~~~~pG~~~~hCH~~~H~~~GM~~~~~V~~ 288 (288)
T 3gdc_A 257 ELRFPYPGKFMFHAHKTEFAELGWMGFFEVSA 288 (288)
T ss_dssp EECCCSCEEEEEECSSHHHHTTTCEEEEEEEC
T ss_pred EEECCCCEEEEEEecChHHHhcCCCEEEEEeC
Confidence 45567899999999999999999999999863
No 66
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=43.87 E-value=19 Score=30.11 Aligned_cols=32 Identities=22% Similarity=0.364 Sum_probs=25.2
Q ss_pred eEEEecCcccEEEEeCCCCCCCCC---CeEEEEEecC
Q 038631 105 TAFRLDHPGPFYFISGASGHCEKG---QRMIIKVMYH 138 (185)
Q Consensus 105 ~~v~L~~~G~~YFiCgv~~HC~~G---mKl~I~V~~~ 138 (185)
..++.++||.+|..|+. -|..| |++.|.|.+.
T Consensus 213 ~~~~~~~~G~y~g~Cse--~CG~~H~~M~~~v~vv~~ 247 (262)
T 2gsm_B 213 LWFRAEREGIFFGQCSE--LCGISHAYMPITVKVVSE 247 (262)
T ss_dssp EEEECCSCEEEEECCCS--CCSTTGGGCCEEEEEECH
T ss_pred EEEecCCcEEEEEEChH--hcccCcccCeEEEEEEcH
Confidence 36788999999999985 56554 9999988753
No 67
>2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} SCOP: b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A 1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A* 1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Probab=42.94 E-value=22 Score=29.82 Aligned_cols=35 Identities=17% Similarity=0.243 Sum_probs=27.9
Q ss_pred EEEecCcccEEEEeCCC-CCCCCCCeEEEEEecCCC
Q 038631 106 AFRLDHPGPFYFISGAS-GHCEKGQRMIIKVMYHEE 140 (185)
Q Consensus 106 ~v~L~~~G~~YFiCgv~-~HC~~GmKl~I~V~~~~~ 140 (185)
.|..+.+|.++|.|... .|=+.||.-.+.|....-
T Consensus 292 ~v~~~~pG~y~~~~h~~~~h~~~Gm~~~~~V~~~~~ 327 (340)
T 2bw4_A 292 FYTFRQPGVYAYVNHNLIEAFELGAAGHFKVTGEWN 327 (340)
T ss_dssp EEECCSCEEEEEEESSHHHHHTTSCEEEEEEESCCC
T ss_pred EEECCCCeeeEEEcCchHHHHhCCCEEEEEECCCCc
Confidence 56678899999999987 465789999999976543
No 68
>1v54_B Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: b.6.1.2 f.17.2.1 PDB: 1oco_B* 1occ_B* 1ocz_B* 1ocr_B* 1v55_B* 2dyr_B* 2dys_B* 2eij_B* 2eik_B* 2eil_B* 2eim_B* 2ein_B* 2occ_B* 2y69_B* 2ybb_M* 2zxw_B* 3abk_B* 3abl_B* 3abm_B* 3ag1_B* ...
Probab=42.37 E-value=18 Score=29.60 Aligned_cols=30 Identities=13% Similarity=0.391 Sum_probs=24.4
Q ss_pred EEEecCcccEEEEeCCCCCCCCC---CeEEEEEec
Q 038631 106 AFRLDHPGPFYFISGASGHCEKG---QRMIIKVMY 137 (185)
Q Consensus 106 ~v~L~~~G~~YFiCgv~~HC~~G---mKl~I~V~~ 137 (185)
.++.++||.+|..|+. -|..| |++.|.|.+
T Consensus 183 ~~~~~~~G~y~g~Cse--~CG~~Hs~M~~~v~vv~ 215 (227)
T 1v54_B 183 TLMSSRPGLYYGQCSE--ICGSNHSFMPIVLELVP 215 (227)
T ss_dssp EECCSSCEEEEECCCS--CCSTTGGGCCEEEEEEC
T ss_pred EEecCCcEEEEEEehh--hcccccccCeEEEEEEc
Confidence 5678999999999975 66654 999888875
No 69
>3l6w_A Hemocyanin 1; cupredoxin domain, copper-binding protein, metal-binding, oxygen binding; 4.00A {Megathura crenulata} PDB: 3qjo_A
Probab=39.09 E-value=36 Score=31.38 Aligned_cols=71 Identities=15% Similarity=0.356 Sum_probs=46.9
Q ss_pred CeeeeccEeeEEeeCCcE----EEE-cccccCCCCCCCCceeeCC--CCeEEEecCcccEEEEeCCCCCCCCCC-eEEEE
Q 038631 63 NRFQVGDTIRFKYKKDSV----MEV-TDKEYKKCNSTHPIFFSNT--GNTAFRLDHPGPFYFISGASGHCEKGQ-RMIIK 134 (185)
Q Consensus 63 ~tF~vGD~LvF~y~~hsV----~~V-~~~~Y~~C~~s~pi~~~~~--G~~~v~L~~~G~~YFiCgv~~HC~~Gm-Kl~I~ 134 (185)
...+.|-.++|.=-..+| +.. +-+....|...- ..+++ =+.+..| ++|.|||..+...-|++|- |+.|.
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (491)
T 3l6w_A 413 VVVKRGTKIMFMSVDEAVTTPMLNLGSYTAMFKCKVPP--FSFHAFELGKMYSV-ESGDYFMTASTTELCNDNNLRIHVH 489 (491)
T ss_pred eEeecCCEEEEEecccchhhHHHhhhhhhhhhccccCC--CccCcccccceEec-CCCceEecCChHHHHhCCceeEEEE
Confidence 467888888886544332 222 455666788652 12221 1223344 5899999999999999997 99988
Q ss_pred Ee
Q 038631 135 VM 136 (185)
Q Consensus 135 V~ 136 (185)
|.
T Consensus 490 ~~ 491 (491)
T 3l6w_A 490 VD 491 (491)
T ss_pred eC
Confidence 73
No 70
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A
Probab=37.52 E-value=20 Score=30.15 Aligned_cols=34 Identities=26% Similarity=0.384 Sum_probs=28.4
Q ss_pred EEEecCcccEEEEeCCCCCC-CCCCeEEEEEecCC
Q 038631 106 AFRLDHPGPFYFISGASGHC-EKGQRMIIKVMYHE 139 (185)
Q Consensus 106 ~v~L~~~G~~YFiCgv~~HC-~~GmKl~I~V~~~~ 139 (185)
.|+.+.+|.++|.|....|| +.||.-.+.|....
T Consensus 275 ~v~~~~pG~y~l~~h~~~~~~~~g~~a~l~~~g~~ 309 (327)
T 1kbv_A 275 EFKVDIPGNYTLVDHSIFRAFNKGALGQLKVEGAE 309 (327)
T ss_dssp EEEECSCEEEEEEESSTHHHHHSSCEEEEEEESCC
T ss_pred EEEeCCCeEEEEEeccccccccCCcEEEEEECCCC
Confidence 56678899999999999998 78998888887543
No 71
>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal B protein; 1.90A {Nitrosomonas europaea}
Probab=36.13 E-value=22 Score=30.00 Aligned_cols=79 Identities=11% Similarity=0.136 Sum_probs=0.0
Q ss_pred eeeeccEeeEEeeC----------CcEEEEc--ccccCCCCCCCCceeeCCCCeEEEecCcccEEEEeCCCCCC---CCC
Q 038631 64 RFQVGDTIRFKYKK----------DSVMEVT--DKEYKKCNSTHPIFFSNTGNTAFRLDHPGPFYFISGASGHC---EKG 128 (185)
Q Consensus 64 tF~vGD~LvF~y~~----------hsV~~V~--~~~Y~~C~~s~pi~~~~~G~~~v~L~~~G~~YFiCgv~~HC---~~G 128 (185)
+++.||+|+.++.+ |.+.+-. ..|-..=....++....+-...++.+++|++||-|....+= ..|
T Consensus 37 ~~~~Gd~v~v~~~N~l~~~~siH~HG~~~~~~~~~DG~p~~t~~~i~PG~~~~y~f~~~~~Gt~wYH~H~~~~~~~~~~G 116 (318)
T 3g5w_A 37 HVMEGDDVTVNVTNMTTLPHTIHWHGMLQRGTWQSDGVPHATQHAIEPGDTFTYKFKAEPAGTMWYHCHVNVNEHVTMRG 116 (318)
T ss_dssp EEETTCEEEEEEEECSSSCBCCEEETCCCTTCGGGSCCBTTTBCCBCTTCEEEEEEECCSCEEEEEECCSSHHHHHHHSC
T ss_pred EEeCCCEEEEEEEeCCCCceeEEecCcCCCCCcccCCCcccccccCCCCCEEEEEEEcCCCEEEEEEccCChhhhhccCC
Q ss_pred CeEEEEEecCCCCC
Q 038631 129 QRMIIKVMYHEESS 142 (185)
Q Consensus 129 mKl~I~V~~~~~p~ 142 (185)
|.-.+.|.+..+.+
T Consensus 117 l~G~lIV~~~~~~~ 130 (318)
T 3g5w_A 117 MWGPLIVEPKNPLP 130 (318)
T ss_dssp CEEEEEEECSSCCH
T ss_pred CEEEEEEcCCCccc
No 72
>3iuw_A Activating signal cointegrator; NP_814290.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.58A {Enterococcus faecalis V583}
Probab=35.78 E-value=13 Score=26.30 Aligned_cols=14 Identities=43% Similarity=0.819 Sum_probs=11.1
Q ss_pred CeeeeccEeeEE-ee
Q 038631 63 NRFQVGDTIRFK-YK 76 (185)
Q Consensus 63 ~tF~vGD~LvF~-y~ 76 (185)
+.|++||.|+|+ |+
T Consensus 36 r~~~vGD~l~l~E~~ 50 (83)
T 3iuw_A 36 RNFQVGDILILEEYM 50 (83)
T ss_dssp SCCCTTCEEEEEEEE
T ss_pred cCCCCCCEEEEEEcc
Confidence 459999999985 53
No 73
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=34.25 E-value=22 Score=24.93 Aligned_cols=20 Identities=15% Similarity=0.429 Sum_probs=15.8
Q ss_pred hhccCCeeeeccEeeEEeeC
Q 038631 58 DWASENRFQVGDTIRFKYKK 77 (185)
Q Consensus 58 ~Wa~~~tF~vGD~LvF~y~~ 77 (185)
+.+.-..+++||.+.|.|..
T Consensus 55 ~~~~l~~lk~Gd~V~F~~~~ 74 (88)
T 2vb2_X 55 PQTKMSEIKTGDKVAFNFVQ 74 (88)
T ss_dssp TTCEECCCCTTCEEEEEEEE
T ss_pred ChhhhhcCCCCCEEEEEEEE
Confidence 34445689999999999985
No 74
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=34.11 E-value=22 Score=24.39 Aligned_cols=16 Identities=19% Similarity=0.592 Sum_probs=13.9
Q ss_pred CCeeeeccEeeEEeeC
Q 038631 62 ENRFQVGDTIRFKYKK 77 (185)
Q Consensus 62 ~~tF~vGD~LvF~y~~ 77 (185)
-..+++||.+.|.+..
T Consensus 51 l~~lk~Gd~V~F~~~~ 66 (80)
T 2qcp_X 51 MSEIKTGDKVAFNFVQ 66 (80)
T ss_dssp ECCCCTTCEEEEEEEE
T ss_pred hhcCCCCCEEEEEEEE
Confidence 3579999999999985
No 75
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=32.98 E-value=17 Score=27.70 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=18.3
Q ss_pred ccCCeeeeccEeeEEeeCCc--EEEE
Q 038631 60 ASENRFQVGDTIRFKYKKDS--VMEV 83 (185)
Q Consensus 60 a~~~tF~vGD~LvF~y~~hs--V~~V 83 (185)
+..+..++||.++|.+...+ +++|
T Consensus 112 v~dn~L~~GD~cvFeli~~~~~~f~V 137 (146)
T 4i1k_A 112 TLENNLGEGDVCVFELLRTRDFVLKV 137 (146)
T ss_dssp HHHTTCCTTCEEEEEECSSSSCEEEE
T ss_pred HHHcCCCCCCEEEEEEecCCceEEEE
Confidence 45688999999999998632 5554
No 76
>3t9w_A Small laccase, multi-copper oxidase; two-domain copper oxidase, Cu-binding, oxidoreducta; 1.50A {Amycolatopsis SP}
Probab=32.81 E-value=18 Score=30.22 Aligned_cols=32 Identities=16% Similarity=0.276 Sum_probs=28.1
Q ss_pred cCcccEEEEeCCCCCCCCCCeEEEEEecCCCC
Q 038631 110 DHPGPFYFISGASGHCEKGQRMIIKVMYHEES 141 (185)
Q Consensus 110 ~~~G~~YFiCgv~~HC~~GmKl~I~V~~~~~p 141 (185)
+.||.+.|-|-+..|=+.||...+.|.....+
T Consensus 260 dnPG~w~~HCHi~~H~~~GM~~~f~V~~~~~~ 291 (299)
T 3t9w_A 260 VGPGMWMYHCHVQNHSDMGMAGMFLVRNADGT 291 (299)
T ss_dssp TCSEEEEEEECSHHHHHTTCEEEEEEECTTSC
T ss_pred CCCeeEEEEcCCHHHHhcCCeEEEEEECCCCC
Confidence 45899999999999999999999999876654
No 77
>1zpu_A Iron transport multicopper oxidase FET3; ferroxidase, oxidoreduc; HET: NAG BMA MAN NDG; 2.80A {Saccharomyces cerevisiae}
Probab=31.20 E-value=61 Score=29.32 Aligned_cols=35 Identities=20% Similarity=0.464 Sum_probs=30.0
Q ss_pred eEEEec-CcccEEEEeCCCCCCCCCCeEEEEEecCC
Q 038631 105 TAFRLD-HPGPFYFISGASGHCEKGQRMIIKVMYHE 139 (185)
Q Consensus 105 ~~v~L~-~~G~~YFiCgv~~HC~~GmKl~I~V~~~~ 139 (185)
..|+++ .+|++||=|-...|=..||.-.+.|....
T Consensus 91 Y~f~~~~~~GT~wYH~H~~~q~~~Gl~G~liV~~~~ 126 (534)
T 1zpu_A 91 YNFTVDYNVGTYWYHSHTDGQYEDGMKGLFIIKDDS 126 (534)
T ss_dssp EEEECSSCCEEEEEECCSSSGGGGTCEEEEEEECTT
T ss_pred EEEEeCccceeEEEEEcCcccccCcceeeEEeCCCC
Confidence 367777 89999999999888888999999998764
No 78
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=28.60 E-value=26 Score=25.05 Aligned_cols=30 Identities=10% Similarity=0.222 Sum_probs=23.8
Q ss_pred EEEEeCCCCCCCCCCCCCcchhhhccCCeeeeccEeeEEe
Q 038631 36 EFQVGGNRGWVVPPANDSKIYNDWASENRFQVGDTIRFKY 75 (185)
Q Consensus 36 ~~~VGg~~GW~~p~~~~~~~Y~~Wa~~~tF~vGD~LvF~y 75 (185)
+.++||+.| .+ ..+.|... |..||.+.++.
T Consensus 41 ~~~l~DeTG-~I-------~~tlW~~~--l~~Gdvv~i~n 70 (106)
T 2k75_A 41 QGYIEDDTA-RI-------RISSFGKQ--LQDSDVVRIDN 70 (106)
T ss_dssp EEEEECSSC-EE-------EEEEESSC--CCTTEEEEEEE
T ss_pred EEEEEcCCC-eE-------EEEEEcCc--cCCCCEEEEEe
Confidence 567999888 43 57888777 99999998873
No 79
>3sqr_A Laccase; multicopper oxidase, glycosylation, oxidoreductase; HET: NAG BMA MAN; 1.67A {Botrytis aclada}
Probab=27.93 E-value=84 Score=29.03 Aligned_cols=34 Identities=15% Similarity=0.066 Sum_probs=29.1
Q ss_pred eEEEecCcccEEEEeCCCCCCCCCCeEEEEEecC
Q 038631 105 TAFRLDHPGPFYFISGASGHCEKGQRMIIKVMYH 138 (185)
Q Consensus 105 ~~v~L~~~G~~YFiCgv~~HC~~GmKl~I~V~~~ 138 (185)
.+|+++.+|++||=|-...|=..|+.-.+.|..+
T Consensus 155 Y~f~~~q~GT~WYHsH~~~q~~~GL~G~lIV~~p 188 (580)
T 3sqr_A 155 YKFQVTQYGTTWYHSHFSLQYGDGLFGPLIINGP 188 (580)
T ss_dssp EEEECCCCEEEEEEECSTTGGGGTCEEEEEEECC
T ss_pred EEEECCCCcceEEeecccccccCcCEEEEEeeCc
Confidence 3778889999999999888878899999999854
No 80
>2ls0_1 Zoocin A endopeptidase; specificity, hydrolase; NMR {Streptococcus equi subsp}
Probab=27.66 E-value=60 Score=24.64 Aligned_cols=46 Identities=15% Similarity=0.237 Sum_probs=30.0
Q ss_pred CCeeeeccEeeEEeeCCcEEEEcccccCCCCCCCCceeeCCC-C--eEEEecCcccEEEEeCC
Q 038631 62 ENRFQVGDTIRFKYKKDSVMEVTDKEYKKCNSTHPIFFSNTG-N--TAFRLDHPGPFYFISGA 121 (185)
Q Consensus 62 ~~tF~vGD~LvF~y~~hsV~~V~~~~Y~~C~~s~pi~~~~~G-~--~~v~L~~~G~~YFiCgv 121 (185)
.|.|++||. |+|..+.|-.+.+..|- +| - ..|++...|..|..|-.
T Consensus 72 dq~~kvG~y--F~F~~d~v~ivge~~~~------------~G~~~~~~~ef~~~g~VWLs~~s 120 (128)
T 2ls0_1 72 DQVLQKGGY--FVINPNNVKSVGTPMKG------------SGGLSWAQVNFTTGGNVWLNTTS 120 (128)
T ss_dssp SSSCCSSSC--CBCCSSSEEEEEEEESC------------SSSSCEEEEEETTTEEEEEECSC
T ss_pred ccccccccE--EEECCceeeEeCCCccc------------cCEEEEEEEeeCCCceEEEEecc
Confidence 478999994 56666655555444332 23 2 37888888888888753
No 81
>2q9o_A Laccase-1; multicopper oxidase, 2-OXOH oxidoreductase; HET: OHI NAG MAN GOL; 1.30A {Melanocarpus albomyces} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 3fu7_A* 3fu8_A* 3fu7_B* 1gw0_A* 2ih9_A* 2ih8_A* 3fu9_A* 3qpk_A* 3dkh_A* 3pps_A*
Probab=27.32 E-value=74 Score=28.87 Aligned_cols=34 Identities=18% Similarity=0.154 Sum_probs=29.4
Q ss_pred eEEEecCcccEEEEeCCCCCCCCCCeEEEEEecC
Q 038631 105 TAFRLDHPGPFYFISGASGHCEKGQRMIIKVMYH 138 (185)
Q Consensus 105 ~~v~L~~~G~~YFiCgv~~HC~~GmKl~I~V~~~ 138 (185)
..|+++.+|++||=|-...|=..||--.+.|..+
T Consensus 125 Y~f~~~q~GT~wYH~H~~~q~~~Gl~G~liV~~~ 158 (559)
T 2q9o_A 125 YRWRARQYGTSWYHSHFSAQYGNGVVGTIQINGP 158 (559)
T ss_dssp EEEECCSCEEEEEEECSTTGGGGTCEEEEEEECC
T ss_pred EEEECCCCEEEEEEEcccchhcCCceEEEEecCC
Confidence 3778889999999999988888899999999854
No 82
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}
Probab=26.99 E-value=45 Score=28.94 Aligned_cols=35 Identities=23% Similarity=0.477 Sum_probs=29.0
Q ss_pred EEEecCcccEEEEeCCCCCC-CCCCeEEEEEecCCC
Q 038631 106 AFRLDHPGPFYFISGASGHC-EKGQRMIIKVMYHEE 140 (185)
Q Consensus 106 ~v~L~~~G~~YFiCgv~~HC-~~GmKl~I~V~~~~~ 140 (185)
.|+.+++|.++|.|....|+ ..||...+.|.....
T Consensus 265 ~v~~~~~G~y~~~~~~~~~~~~~g~~a~l~v~~~~~ 300 (442)
T 2zoo_A 265 EFKVEVPGTFILVDHSIFRAFNKGALAMLKVEGPDD 300 (442)
T ss_dssp EEECCSCEEEEEEESSTHHHHTTSCEEEEEEESCCC
T ss_pred EEEcCCCCeEEEEecccccccccCceEEEEecCCCC
Confidence 56778899999999998887 789988888876553
No 83
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=26.95 E-value=32 Score=23.73 Aligned_cols=19 Identities=16% Similarity=0.422 Sum_probs=15.4
Q ss_pred hccCCeeeeccEeeEEeeC
Q 038631 59 WASENRFQVGDTIRFKYKK 77 (185)
Q Consensus 59 Wa~~~tF~vGD~LvF~y~~ 77 (185)
.+.-..+++||.+.|.+..
T Consensus 42 ~~~l~~lk~Gd~V~F~~~~ 60 (82)
T 2l55_A 42 AGLPQGLKAGDRVAFSFRL 60 (82)
T ss_dssp TCCCSSCSTTCEEEEEEEE
T ss_pred hhHhhcCCCCCEEEEEEEE
Confidence 3345679999999999986
No 84
>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper transport, copper, transport, polymorphism, glycoprotein, multi-copper oxidase; HET: NAG; 2.80A {Homo sapiens} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1kcw_A*
Probab=26.82 E-value=66 Score=31.79 Aligned_cols=74 Identities=12% Similarity=0.077 Sum_probs=50.0
Q ss_pred CCeeeeccEeeEEeeC-------CcEEEE------cccccCCCCCCCCceeeCCCCeEEEecCcccEEEEeCCCCCCCCC
Q 038631 62 ENRFQVGDTIRFKYKK-------DSVMEV------TDKEYKKCNSTHPIFFSNTGNTAFRLDHPGPFYFISGASGHCEKG 128 (185)
Q Consensus 62 ~~tF~vGD~LvF~y~~-------hsV~~V------~~~~Y~~C~~s~pi~~~~~G~~~v~L~~~G~~YFiCgv~~HC~~G 128 (185)
..++..||+++.+-.. |++.+- +...++.|...- ..+-...++.+.+|.+|+-|-+..|=..|
T Consensus 633 ~l~~~~gd~v~~~v~~~g~~~~~Hgl~~~g~t~~~dG~~~~t~~i~p----g~~~t~~~~~~~~Gt~~~h~h~~~~~~~G 708 (1065)
T 2j5w_A 633 GLTMCKGDSVVWYLFSAGNEADVHGIYFSGNTYLWRGERRDTANLFP----QTSLTLHMWPDTEGTFNVECLTTDHYTGG 708 (1065)
T ss_dssp CCEEETTCCEEEEEECCCSTTCCEEEEETTCCEEETTEEESEEEECT----TCEEEEEECCCSCEEEEEEECSHHHHHTT
T ss_pred ceEEeCCCEEEEEEEcCCCcceEEeeEEeCCceeecCeecceEeecC----CceEEEEEecCCCeEEEEecCCCcccCCC
Confidence 4689999999887753 345442 122234454321 11122456677899999999999999999
Q ss_pred CeEEEEEecCC
Q 038631 129 QRMIIKVMYHE 139 (185)
Q Consensus 129 mKl~I~V~~~~ 139 (185)
|+..+.|....
T Consensus 709 m~g~~~V~~~~ 719 (1065)
T 2j5w_A 709 MKQKYTVNQCR 719 (1065)
T ss_dssp CEEEEEEECCS
T ss_pred cEEEEEEcCCc
Confidence 99999997653
No 85
>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A {Cucurbita pepo var} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1aso_A* 1asp_A* 1asq_A*
Probab=26.47 E-value=96 Score=27.96 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=30.0
Q ss_pred eEEEecCcccEEEEeCCCCCCCCCCeEEEEEecCC
Q 038631 105 TAFRLDHPGPFYFISGASGHCEKGQRMIIKVMYHE 139 (185)
Q Consensus 105 ~~v~L~~~G~~YFiCgv~~HC~~GmKl~I~V~~~~ 139 (185)
.+|+++.+|++||=|-...+=..||--.+.|....
T Consensus 91 Y~f~~~~~GT~wYHsH~~~q~~~Gl~G~liV~~~~ 125 (552)
T 1aoz_A 91 YNFTVDNPGTFFYHGHLGMQRSAGLYGSLIVDPPQ 125 (552)
T ss_dssp EEEECCSCEEEEEEECSTTTGGGTCEEEEEEECCT
T ss_pred EEEECCCCEEEEEEECchhHHhccCeeeEEEeCCc
Confidence 36778899999999999888788999999998764
No 86
>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper transport, copper, transport, polymorphism, glycoprotein, multi-copper oxidase; HET: NAG; 2.80A {Homo sapiens} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1kcw_A*
Probab=25.39 E-value=43 Score=33.11 Aligned_cols=75 Identities=11% Similarity=0.150 Sum_probs=48.4
Q ss_pred CeeeeccEeeEEeeC---C-cE--EEEcccccCCCCCCCCc-----eeeCCC--CeEEEecCcccEEEEeCCCCCCCCCC
Q 038631 63 NRFQVGDTIRFKYKK---D-SV--MEVTDKEYKKCNSTHPI-----FFSNTG--NTAFRLDHPGPFYFISGASGHCEKGQ 129 (185)
Q Consensus 63 ~tF~vGD~LvF~y~~---h-sV--~~V~~~~Y~~C~~s~pi-----~~~~~G--~~~v~L~~~G~~YFiCgv~~HC~~Gm 129 (185)
.+++.|+++.|+.-+ . .. +.+..-.+. .+|. ....+. ...|+.+++|.++|.|-...|=+.||
T Consensus 273 l~v~~Ge~vRlRliNag~~~~~~~~~i~Gh~f~----v~p~~~dtv~I~pGer~dVlv~~~~pG~y~i~~h~~~h~~~Gm 348 (1065)
T 2j5w_A 273 LSMCAEDRVKWYLFGMGNEVDVHAAFFHGQALT----NKNYRIDTINLFPATLFDAYMVAQNPGEWMLSCQNLNHLKAGL 348 (1065)
T ss_dssp CEEETTCEEEEEEEECSSTTCCEEEEETTCCEE----ETTEEESEEEECBTCEEEEEEECCSCEEEEEEECSHHHHHTTC
T ss_pred eEECCCCEEEEEEEcCCcccceeEEEEcCCEEE----ECCeeecEEEECCCcEEEEEEEeCCCeeEEEEecCcchhhCCC
Confidence 578889999888864 1 12 222222222 1221 122222 23567778999999999999989999
Q ss_pred eEEEEEecCCCC
Q 038631 130 RMIIKVMYHEES 141 (185)
Q Consensus 130 Kl~I~V~~~~~p 141 (185)
...+.|.....+
T Consensus 349 ~~~~~V~~~~~~ 360 (1065)
T 2j5w_A 349 QAFFQVQECNKS 360 (1065)
T ss_dssp EEEEEEECSCCC
T ss_pred EEEEEEecCCCc
Confidence 999999865543
No 87
>1xne_A Hypothetical protein PF0469; GFT structural genomics, protein structure initiative, NESG, PFR14, alpha and beta protein; NMR {Pyrococcus furiosus} SCOP: b.122.1.6
Probab=25.31 E-value=16 Score=27.08 Aligned_cols=13 Identities=31% Similarity=0.488 Sum_probs=10.6
Q ss_pred CeeeeccEeeEEe
Q 038631 63 NRFQVGDTIRFKY 75 (185)
Q Consensus 63 ~tF~vGD~LvF~y 75 (185)
+.+++||.|+|+=
T Consensus 33 ~~i~vGD~I~f~~ 45 (113)
T 1xne_A 33 KDIKRGDKIIFND 45 (113)
T ss_dssp TTCCTTCEEEETT
T ss_pred hccCCCCEEEEcc
Confidence 4689999999943
No 88
>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 b.18.1.2 b.18.1.2
Probab=24.46 E-value=35 Score=31.45 Aligned_cols=32 Identities=9% Similarity=0.166 Sum_probs=28.4
Q ss_pred EEEecCcccEEEEeCCCCCCCCCCeEEEEEec
Q 038631 106 AFRLDHPGPFYFISGASGHCEKGQRMIIKVMY 137 (185)
Q Consensus 106 ~v~L~~~G~~YFiCgv~~HC~~GmKl~I~V~~ 137 (185)
.|..+.||.+.|-|-+..|-..||...+.|.+
T Consensus 296 ~~~~~~pG~w~~hch~~~h~~~Gm~~~~~V~~ 327 (647)
T 1sdd_B 296 EMKASKPGWWLLDTEVGEIQRAGMQTPFLIVD 327 (647)
T ss_dssp EEECCSSEEEEEECCCHHHHTTTCEEEEEEEC
T ss_pred EEEeccceEeecccCcccccccccccceeeec
Confidence 45667899999999999999999999999964
No 89
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Probab=24.33 E-value=53 Score=28.41 Aligned_cols=34 Identities=21% Similarity=0.361 Sum_probs=28.6
Q ss_pred EEEecCcccEEEEeCCCCCCCCCCeEEEEEecCC
Q 038631 106 AFRLDHPGPFYFISGASGHCEKGQRMIIKVMYHE 139 (185)
Q Consensus 106 ~v~L~~~G~~YFiCgv~~HC~~GmKl~I~V~~~~ 139 (185)
.|..+.||.++|-|-...|=..||...+.|....
T Consensus 402 ~~~~~~pG~~~~hch~~~h~~~Gm~~~~~v~~~~ 435 (447)
T 2dv6_A 402 DFKIDRAGRYILVDHALSRLEHGLVGFLNVDGPK 435 (447)
T ss_dssp EEECCSCEEEEEEESSGGGGGGTCCEEEEECSCS
T ss_pred EEECCCCEEEEEEecCcCccccCCEEEEEEeCCC
Confidence 5566889999999999999888999999986543
No 90
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=22.47 E-value=95 Score=21.45 Aligned_cols=28 Identities=11% Similarity=0.140 Sum_probs=15.5
Q ss_pred CCCCeEEEEEecCCCCCCCCCCCCCCCC
Q 038631 126 EKGQRMIIKVMYHEESSPSTGDDHGHKS 153 (185)
Q Consensus 126 ~~GmKl~I~V~~~~~p~~sp~~~~~~~s 153 (185)
+.|..+.+.+.....+.+++.+.+.+||
T Consensus 78 ~~g~~i~l~~~~~~~~~~~~~~~~~~~~ 105 (106)
T 1wx7_A 78 RDGLTVHLVIKRQHRAMGNECPASGPSS 105 (106)
T ss_dssp CTTEEEEEEECCCCCSCCCCCCCCCCCC
T ss_pred CCCCEEEEEEcCCCCCCCCCCCCCCCCC
Confidence 4677777777655555444433344443
No 91
>3kw8_A Laccase, putative copper oxidase; two-domain laccase, oxidoreductase, multicopper blue protein; HET: PG4 PGE; 2.29A {Streptomyces coelicolor} PDB: 4gxf_A* 4gy4_A*
Probab=22.38 E-value=1e+02 Score=25.12 Aligned_cols=30 Identities=13% Similarity=0.125 Sum_probs=22.1
Q ss_pred cccEEEEeCCCC------CCCCCCeEEEEEecCCCC
Q 038631 112 PGPFYFISGASG------HCEKGQRMIIKVMYHEES 141 (185)
Q Consensus 112 ~G~~YFiCgv~~------HC~~GmKl~I~V~~~~~p 141 (185)
+|.+||-|-..+ |=..||--.+.|.....+
T Consensus 109 ~gt~~YH~h~~~~~~~~~~~~~Gl~G~liV~~~~~~ 144 (276)
T 3kw8_A 109 AGYWHYHDHVVGTEHGTGGIRNGLYGPVIVRRKGDV 144 (276)
T ss_dssp CEEEEEECSSSSSTTCHHHHHHTCEEEEEEECTTCC
T ss_pred CEEEEEecCccccccchhhhhCccEEEEEEecCCCc
Confidence 478889998754 345799999999865543
No 92
>3tas_A Small laccase, multi-copper oxidase; two-domain laccase, oxidoreductase, secreted; HET: PG4; 2.30A {Streptomyces viridosporus} PDB: 3tbb_A 3tbc_A*
Probab=21.85 E-value=1.5e+02 Score=24.47 Aligned_cols=79 Identities=16% Similarity=0.221 Sum_probs=0.0
Q ss_pred eeeeccEeeEEeeC----------CcEEEEcccccCCCCCCCCceeeCCCCeEEEecCc-------------ccEEEEeC
Q 038631 64 RFQVGDTIRFKYKK----------DSVMEVTDKEYKKCNSTHPIFFSNTGNTAFRLDHP-------------GPFYFISG 120 (185)
Q Consensus 64 tF~vGD~LvF~y~~----------hsV~~V~~~~Y~~C~~s~pi~~~~~G~~~v~L~~~-------------G~~YFiCg 120 (185)
++++||+|+.++.+ |.+..-...|=.. ....++....+-..+++++.| |.+||-|-
T Consensus 45 ~~~~Gd~v~v~~~N~l~~~~siH~HG~~~~~~~dG~~-~~~~~i~PG~~~~Y~~~~~~P~~~~~~~~~~~~~gt~~YH~h 123 (313)
T 3tas_A 45 ELNEGDTLHIEFENTMDVPVSLHVHGLDYEISSDGTK-QSRSDVEPGGTRTYTWRTHVPGRRADGTWRAGSAGYWHYHDH 123 (313)
T ss_dssp EEETTCEEEEEEEECSSSCBCCEESSSBCCGGGSCST-TTTCCBCTTCEEEEEEBCCCCEECTTSCEECCSCEEEEEECS
T ss_pred EEECCCEEEEEEEECCCCCccEeecCCcCCccCCCCc-cccCCcCCCCEEEEEEEeccCCccccccccCCCceEEEEeec
Q ss_pred CCCCCC------CCCeEEEEEecCCCCCC
Q 038631 121 ASGHCE------KGQRMIIKVMYHEESSP 143 (185)
Q Consensus 121 v~~HC~------~GmKl~I~V~~~~~p~~ 143 (185)
+.+.=+ .||--.+.|.....+.+
T Consensus 124 ~~~~~~~~~~~~~Gl~G~liV~~~~~~~~ 152 (313)
T 3tas_A 124 VVGTEHGTGGIRNGLYGPVIVRRKGDVLP 152 (313)
T ss_dssp SSSSTTCHHHHHHTCEEEEEEECTTCBCC
T ss_pred CcccccchhhhhccccCceEeeccccccc
No 93
>4he6_A Peptidase family U32; ultra-tight crystal packing, unknown function; 1.10A {Geobacillus thermoleovorans} PDB: 4he5_A
Probab=21.16 E-value=31 Score=23.58 Aligned_cols=17 Identities=29% Similarity=0.524 Sum_probs=13.8
Q ss_pred cCCeeeeccEeeEEeeC
Q 038631 61 SENRFQVGDTIRFKYKK 77 (185)
Q Consensus 61 ~~~tF~vGD~LvF~y~~ 77 (185)
.+.+|.+||.|+|--+.
T Consensus 26 ~rN~f~~GD~iEi~~P~ 42 (89)
T 4he6_A 26 QRNHFRPGDEVEFFGPE 42 (89)
T ss_dssp ESSCBCTTCEEEEESTT
T ss_pred EcCCcCCCCEEEEEcCC
Confidence 36799999999987655
No 94
>2hzs_I RNA polymerase II mediator complex subunit 8; beta barrel, channel, helix, transcription; 2.70A {Saccharomyces cerevisiae}
Probab=20.07 E-value=3.3 Score=23.09 Aligned_cols=16 Identities=25% Similarity=0.681 Sum_probs=12.4
Q ss_pred CCeeeeccEeeEEeeC
Q 038631 62 ENRFQVGDTIRFKYKK 77 (185)
Q Consensus 62 ~~tF~vGD~LvF~y~~ 77 (185)
++.|.|.|.|.|.|..
T Consensus 4 skpfnvddvlkftftg 19 (27)
T 2hzs_I 4 SKPFNVDDVLKFTFTG 19 (27)
T ss_dssp --CCCHHHHHHHHHHC
T ss_pred CCCcChhheEEEEecc
Confidence 4789999999999974
Done!