BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038633
(176 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 31.2 bits (69), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 49 HELGGPISPSXXXXXXXXXXXXSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQS 107
+ L GPI P+ + N G +P+F+ +K L L+ S + SGT+P S
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSG-AIPDFLSQIKTLVTLDFSYNALSGTLPPS 144
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 30.0 bits (66), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 73 NNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIP 105
NN ++P++IG L+ L L LS + FSG IP
Sbjct: 496 NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 528
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 73 NNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQS 107
N F G K+P + + EL L+LS ++ SGTIP S
Sbjct: 401 NGFTG-KIPPTLSNCSELVSLHLSFNYLSGTIPSS 434
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 71 SMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQS 107
S N+F G +P +G + L +L+L+ + F+GTIP +
Sbjct: 519 SNNSFSG-NIPAELGDCRSLIWLDLNTNLFNGTIPAA 554
Score = 27.7 bits (60), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 52 GGPISPSXXXXXXXXXXXXSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQ 106
GG SP+ S N G+ +P+ IGS+ L LNL + SG+IP
Sbjct: 618 GGHTSPTFDNNGSMMFLDMSYNMLSGY-IPKEIGSMPYLFILNLGHNDISGSIPD 671
Score = 27.7 bits (60), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 48/122 (39%), Gaps = 6/122 (4%)
Query: 53 GPISPSXXXXXXXXXXXXSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSXXXXX 112
G I P+ S N G +P +GSL +LR L L + G IPQ
Sbjct: 405 GKIPPTLSNCSELVSLHLSFNYLSG-TIPSSLGSLSKLRDLKLWLNMLEGEIPQE-LMYV 462
Query: 113 XXXXXXXXXXXDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRL 172
D + +I G LS +L +++L L+ + W I L +L L+L
Sbjct: 463 KTLETLILDFNDLTGEIPSG-LSNCTNLNWISLSNNRLTGEIPKW---IGRLENLAILKL 518
Query: 173 PN 174
N
Sbjct: 519 SN 520
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 5/95 (5%)
Query: 14 LSRIFALSLLRCCSVGSALAQPFRDSFDTYE--DDAGHELGGPISPSXXXXXXXXXXXXS 71
+SR L L S + PF + D +G++L G S + S
Sbjct: 193 VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS 252
Query: 72 MNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQ 106
N F G +P LK L+YL+L+ + F+G IP
Sbjct: 253 SNQFVG-PIPPL--PLKSLQYLSLAENKFTGEIPD 284
Score = 26.6 bits (57), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 80 VPEFIGSLKELRYLNLSGSFFSGTIPQS 107
+P+ +G L+ L L+LS + G IPQ+
Sbjct: 669 IPDEVGDLRGLNILDLSSNKLDGRIPQA 696
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 30.0 bits (66), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 73 NNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIP 105
NN ++P++IG L+ L L LS + FSG IP
Sbjct: 499 NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 531
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 73 NNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQS 107
N F G K+P + + EL L+LS ++ SGTIP S
Sbjct: 404 NGFTG-KIPPTLSNCSELVSLHLSFNYLSGTIPSS 437
Score = 28.1 bits (61), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 71 SMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQS 107
S N+F G +P +G + L +L+L+ + F+GTIP +
Sbjct: 522 SNNSFSG-NIPAELGDCRSLIWLDLNTNLFNGTIPAA 557
Score = 27.7 bits (60), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 48/122 (39%), Gaps = 6/122 (4%)
Query: 53 GPISPSXXXXXXXXXXXXSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSXXXXX 112
G I P+ S N G +P +GSL +LR L L + G IPQ
Sbjct: 408 GKIPPTLSNCSELVSLHLSFNYLSG-TIPSSLGSLSKLRDLKLWLNMLEGEIPQE-LMYV 465
Query: 113 XXXXXXXXXXXDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRL 172
D + +I G LS +L +++L L+ + W I L +L L+L
Sbjct: 466 KTLETLILDFNDLTGEIPSG-LSNCTNLNWISLSNNRLTGEIPKW---IGRLENLAILKL 521
Query: 173 PN 174
N
Sbjct: 522 SN 523
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 52 GGPISPSXXXXXXXXXXXXSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQ 106
GG SP+ S N G+ +P+ IGS+ L LNL + SG+IP
Sbjct: 621 GGHTSPTFDNNGSMMFLDMSYNMLSGY-IPKEIGSMPYLFILNLGHNDISGSIPD 674
Score = 27.3 bits (59), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 40/95 (42%), Gaps = 5/95 (5%)
Query: 14 LSRIFALSLLRCCSVGSALAQPFRDSFDTYE--DDAGHELGGPISPSXXXXXXXXXXXXS 71
+SR L L S + PF + D +G++L G S + S
Sbjct: 196 VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS 255
Query: 72 MNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQ 106
N F G +P LK L+YL+L+ + F+G IP
Sbjct: 256 SNQFVG-PIPPL--PLKSLQYLSLAENKFTGEIPD 287
Score = 26.6 bits (57), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 80 VPEFIGSLKELRYLNLSGSFFSGTIPQS 107
+P+ +G L+ L L+LS + G IPQ+
Sbjct: 672 IPDEVGDLRGLNILDLSSNKLDGRIPQA 699
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 26.2 bits (56), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 124 DQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN 176
D SNQ L+GL L++LNL G + + M+ SL L L +CN
Sbjct: 437 DTSNQ---HLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCN 486
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,386,757
Number of Sequences: 62578
Number of extensions: 142153
Number of successful extensions: 224
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 190
Number of HSP's gapped (non-prelim): 25
length of query: 176
length of database: 14,973,337
effective HSP length: 92
effective length of query: 84
effective length of database: 9,216,161
effective search space: 774157524
effective search space used: 774157524
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)