Query 038633
Match_columns 176
No_of_seqs 117 out of 1335
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 13:02:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038633.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038633hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 99.8 4.6E-20 1E-24 155.0 11.0 109 14-123 139-247 (968)
2 PLN00113 leucine-rich repeat r 99.8 1E-19 2.2E-24 153.0 11.5 113 11-124 160-272 (968)
3 KOG4194 Membrane glycoprotein 99.8 1.4E-20 3.1E-25 144.6 -1.7 163 9-175 239-426 (873)
4 KOG0617 Ras suppressor protein 99.7 1.5E-19 3.3E-24 120.0 -3.5 157 9-176 27-184 (264)
5 KOG4194 Membrane glycoprotein 99.7 5.6E-18 1.2E-22 130.5 4.5 163 9-175 143-327 (873)
6 KOG0617 Ras suppressor protein 99.6 4.1E-17 8.9E-22 108.5 -2.0 134 34-176 28-161 (264)
7 KOG0444 Cytoskeletal regulator 99.6 9.7E-16 2.1E-20 119.6 1.6 158 11-176 74-256 (1255)
8 KOG0444 Cytoskeletal regulator 99.5 6.6E-16 1.4E-20 120.5 -1.8 152 15-175 126-301 (1255)
9 cd00116 LRR_RI Leucine-rich re 99.5 2.9E-14 6.2E-19 106.2 4.2 15 14-28 80-94 (319)
10 KOG0472 Leucine-rich repeat pr 99.5 2.9E-15 6.2E-20 111.2 -1.3 122 45-176 418-539 (565)
11 PF14580 LRR_9: Leucine-rich r 99.5 9.1E-14 2E-18 94.3 5.3 125 40-171 20-146 (175)
12 cd00116 LRR_RI Leucine-rich re 99.4 1E-13 2.3E-18 103.1 4.7 164 12-175 48-231 (319)
13 PLN03150 hypothetical protein; 99.4 6.9E-13 1.5E-17 106.9 8.6 106 17-123 420-526 (623)
14 KOG4237 Extracellular matrix p 99.4 1E-14 2.2E-19 108.0 -2.1 63 14-76 66-129 (498)
15 PF14580 LRR_9: Leucine-rich r 99.4 6.6E-13 1.4E-17 90.1 4.1 132 10-146 14-148 (175)
16 PLN03210 Resistant to P. syrin 99.4 1.5E-11 3.3E-16 105.3 13.0 83 89-175 779-879 (1153)
17 PLN03210 Resistant to P. syrin 99.3 1.7E-11 3.7E-16 105.1 12.3 104 14-121 610-713 (1153)
18 KOG0618 Serine/threonine phosp 99.3 1.2E-13 2.6E-18 111.4 -1.0 126 40-175 360-486 (1081)
19 KOG0472 Leucine-rich repeat pr 99.3 1.5E-14 3.3E-19 107.4 -6.2 154 10-175 132-285 (565)
20 PLN03150 hypothetical protein; 99.3 1.3E-11 2.8E-16 99.6 9.2 109 40-151 419-528 (623)
21 KOG0618 Serine/threonine phosp 99.3 6.3E-13 1.4E-17 107.3 0.7 136 14-155 358-493 (1081)
22 KOG1259 Nischarin, modulator o 99.2 9.3E-13 2E-17 95.0 -0.5 125 40-175 285-409 (490)
23 PRK15387 E3 ubiquitin-protein 99.2 6.4E-11 1.4E-15 96.7 9.3 34 139-176 423-456 (788)
24 PRK15370 E3 ubiquitin-protein 99.2 3.6E-11 7.9E-16 98.2 7.6 56 15-76 199-254 (754)
25 PRK15370 E3 ubiquitin-protein 99.2 3.3E-11 7.1E-16 98.5 6.0 146 15-176 262-426 (754)
26 KOG4237 Extracellular matrix p 99.2 1.4E-12 3E-17 96.8 -2.3 130 39-175 67-198 (498)
27 PRK15387 E3 ubiquitin-protein 99.1 4.7E-10 1E-14 91.7 10.0 54 15-76 222-275 (788)
28 PF13855 LRR_8: Leucine rich r 99.1 8.3E-11 1.8E-15 66.4 3.2 58 41-99 3-60 (61)
29 KOG1259 Nischarin, modulator o 99.1 1.8E-11 4E-16 88.4 0.3 138 9-154 278-415 (490)
30 PF13855 LRR_8: Leucine rich r 99.1 9.8E-11 2.1E-15 66.1 3.0 59 64-123 2-60 (61)
31 KOG0532 Leucine-rich repeat (L 99.0 6E-12 1.3E-16 97.3 -3.9 99 17-121 100-198 (722)
32 COG4886 Leucine-rich repeat (L 99.0 2.2E-10 4.7E-15 88.0 4.0 148 15-175 116-287 (394)
33 KOG3207 Beta-tubulin folding c 99.0 2.9E-11 6.3E-16 90.8 -1.1 115 10-124 141-258 (505)
34 COG4886 Leucine-rich repeat (L 99.0 2.7E-10 6E-15 87.4 4.1 107 36-149 113-220 (394)
35 KOG0532 Leucine-rich repeat (L 99.0 8.2E-11 1.8E-15 91.2 0.1 155 9-174 115-269 (722)
36 KOG1909 Ran GTPase-activating 98.9 5.7E-10 1.2E-14 81.8 3.1 136 39-175 92-251 (382)
37 KOG3207 Beta-tubulin folding c 98.9 6.8E-10 1.5E-14 83.6 2.1 161 11-175 168-336 (505)
38 KOG2120 SCF ubiquitin ligase, 98.8 1.3E-10 2.9E-15 83.8 -3.5 158 16-175 186-348 (419)
39 KOG4658 Apoptotic ATPase [Sign 98.8 7.4E-09 1.6E-13 86.2 5.6 152 14-172 522-675 (889)
40 KOG4658 Apoptotic ATPase [Sign 98.7 8.5E-09 1.9E-13 85.8 4.1 110 12-123 542-653 (889)
41 KOG1859 Leucine-rich repeat pr 98.7 3.4E-10 7.4E-15 90.2 -4.7 126 40-176 165-290 (1096)
42 KOG1909 Ran GTPase-activating 98.7 1.6E-08 3.4E-13 74.4 3.5 166 10-175 87-280 (382)
43 KOG1644 U2-associated snRNP A' 98.6 1.3E-07 2.8E-12 64.9 5.8 106 40-149 43-151 (233)
44 KOG3665 ZYG-1-like serine/thre 98.6 6.7E-08 1.5E-12 78.7 4.9 133 40-175 123-260 (699)
45 KOG1859 Leucine-rich repeat pr 98.5 3.1E-09 6.8E-14 84.9 -4.2 99 65-175 166-264 (1096)
46 KOG0531 Protein phosphatase 1, 98.5 2.7E-08 5.8E-13 77.0 0.5 125 39-175 72-196 (414)
47 KOG0531 Protein phosphatase 1, 98.4 1.6E-08 3.5E-13 78.3 -1.9 107 11-124 91-198 (414)
48 KOG1644 U2-associated snRNP A' 98.4 2.8E-07 6E-12 63.3 3.6 128 41-174 21-149 (233)
49 PF12799 LRR_4: Leucine Rich r 98.4 5.6E-07 1.2E-11 47.0 4.0 34 65-100 3-36 (44)
50 KOG4579 Leucine-rich repeat (L 98.3 1.7E-08 3.7E-13 65.2 -3.2 105 16-124 28-135 (177)
51 KOG4579 Leucine-rich repeat (L 98.3 7E-08 1.5E-12 62.4 -1.4 107 41-154 29-139 (177)
52 PF12799 LRR_4: Leucine Rich r 98.2 2.8E-06 6E-11 44.3 4.3 37 88-125 1-37 (44)
53 KOG3665 ZYG-1-like serine/thre 98.2 7.3E-07 1.6E-11 72.8 2.9 139 15-156 122-268 (699)
54 COG5238 RNA1 Ran GTPase-activa 98.2 5.4E-06 1.2E-10 59.8 5.9 88 13-101 28-133 (388)
55 KOG2982 Uncharacterized conser 98.2 1.8E-06 4E-11 62.8 3.4 62 111-175 198-259 (418)
56 COG5238 RNA1 Ran GTPase-activa 98.2 2.1E-06 4.6E-11 61.8 3.6 139 36-175 89-252 (388)
57 KOG2120 SCF ubiquitin ligase, 98.1 3.1E-07 6.7E-12 66.8 -1.6 134 40-175 186-323 (419)
58 KOG2739 Leucine-rich acidic nu 97.9 7.7E-06 1.7E-10 58.3 3.0 129 16-147 19-152 (260)
59 KOG2739 Leucine-rich acidic nu 97.9 4E-06 8.6E-11 59.7 0.9 113 55-171 35-149 (260)
60 KOG2982 Uncharacterized conser 97.9 1.2E-06 2.7E-11 63.7 -1.8 107 16-124 46-158 (418)
61 KOG2123 Uncharacterized conser 97.7 9.4E-07 2E-11 63.8 -4.1 101 14-118 18-123 (388)
62 PRK15386 type III secretion pr 97.7 0.0001 2.2E-09 56.6 6.5 78 8-99 45-123 (426)
63 PRK15386 type III secretion pr 97.7 0.00025 5.5E-09 54.5 7.5 62 38-107 51-113 (426)
64 PF13306 LRR_5: Leucine rich r 97.5 0.00058 1.3E-08 43.9 7.2 106 34-147 7-112 (129)
65 PF13306 LRR_5: Leucine rich r 97.4 0.00055 1.2E-08 44.0 6.0 124 9-141 6-129 (129)
66 KOG2123 Uncharacterized conser 97.4 9E-06 1.9E-10 58.8 -3.3 101 38-144 18-123 (388)
67 PF00560 LRR_1: Leucine Rich R 96.4 0.0017 3.6E-08 28.3 1.0 10 67-76 4-13 (22)
68 PF00560 LRR_1: Leucine Rich R 96.4 0.0017 3.7E-08 28.3 1.0 21 40-61 1-21 (22)
69 KOG1947 Leucine rich repeat pr 96.3 0.0031 6.7E-08 49.5 2.9 113 38-151 187-308 (482)
70 KOG3864 Uncharacterized conser 96.3 0.0014 3E-08 45.5 0.8 86 36-121 98-185 (221)
71 KOG4341 F-box protein containi 96.3 0.0032 7E-08 48.2 2.4 157 15-174 268-435 (483)
72 KOG1947 Leucine rich repeat pr 95.8 0.0021 4.5E-08 50.5 -0.2 110 14-124 187-307 (482)
73 KOG3864 Uncharacterized conser 95.7 0.0021 4.5E-08 44.6 -0.5 86 64-151 102-189 (221)
74 PF13504 LRR_7: Leucine rich r 95.3 0.014 3E-07 23.6 1.5 11 90-100 3-13 (17)
75 KOG4341 F-box protein containi 94.8 0.017 3.6E-07 44.5 1.6 156 13-170 292-457 (483)
76 KOG0473 Leucine-rich repeat pr 94.0 0.0011 2.5E-08 47.1 -5.5 83 38-124 41-123 (326)
77 smart00369 LRR_TYP Leucine-ric 94.0 0.056 1.2E-06 24.3 1.9 20 137-156 1-20 (26)
78 smart00370 LRR Leucine-rich re 94.0 0.056 1.2E-06 24.3 1.9 20 137-156 1-20 (26)
79 PF13516 LRR_6: Leucine Rich r 93.5 0.024 5.2E-07 25.0 0.2 13 64-76 3-15 (24)
80 KOG4308 LRR-containing protein 92.9 0.0022 4.7E-08 50.8 -6.2 38 138-175 262-300 (478)
81 KOG4308 LRR-containing protein 91.8 0.0024 5.1E-08 50.6 -7.3 159 17-175 89-272 (478)
82 KOG0473 Leucine-rich repeat pr 91.5 0.0037 8E-08 44.6 -5.8 89 57-151 36-124 (326)
83 KOG3763 mRNA export factor TAP 87.7 0.54 1.2E-05 37.8 2.8 66 86-153 216-285 (585)
84 smart00368 LRR_RI Leucine rich 86.6 0.5 1.1E-05 21.7 1.3 12 41-52 4-15 (28)
85 smart00365 LRR_SD22 Leucine-ri 84.2 1.1 2.3E-05 20.3 1.7 16 137-152 1-16 (26)
86 smart00364 LRR_BAC Leucine-ric 82.1 0.9 1.9E-05 20.6 1.1 17 89-106 3-19 (26)
87 KOG3763 mRNA export factor TAP 72.9 2.1 4.5E-05 34.6 1.4 64 110-176 216-281 (585)
88 smart00367 LRR_CC Leucine-rich 66.4 4.5 9.7E-05 17.9 1.3 11 165-175 2-12 (26)
89 TIGR00864 PCC polycystin catio 56.4 9.9 0.00021 36.9 2.6 34 45-78 1-34 (2740)
90 TIGR00864 PCC polycystin catio 38.2 22 0.00048 34.8 2.0 32 69-101 1-32 (2740)
91 KOG4242 Predicted myosin-I-bin 26.7 1.4E+02 0.0029 24.4 4.2 37 140-176 415-451 (553)
92 smart00446 LRRcap occurring C- 23.5 40 0.00088 15.2 0.6 14 58-71 8-21 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.82 E-value=4.6e-20 Score=154.97 Aligned_cols=109 Identities=30% Similarity=0.352 Sum_probs=48.0
Q ss_pred ccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEE
Q 038633 14 LSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYL 93 (176)
Q Consensus 14 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L 93 (176)
+++|+.|++++|.+.+..+.....+.+|++|++++|.+.+..|..+.++++|++|++++|.+.+. .|..++.+++|++|
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L 217 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQ-IPRELGQMKSLKWI 217 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCc-CChHHcCcCCccEE
Confidence 34444444444444443343344444444444444444444444444444444444444444433 44444444444444
Q ss_pred EeecccCCCCcchhccCCCCCCEEEccCCc
Q 038633 94 NLSGSFFSGTIPQSLGNLTNLLYLDLNNFL 123 (176)
Q Consensus 94 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~ 123 (176)
++++|++.+..|..++.+++|++|++.+|.
T Consensus 218 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 247 (968)
T PLN00113 218 YLGYNNLSGEIPYEIGGLTSLNHLDLVYNN 247 (968)
T ss_pred ECcCCccCCcCChhHhcCCCCCEEECcCce
Confidence 444444443344444444444444444443
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.82 E-value=1e-19 Score=152.96 Aligned_cols=113 Identities=34% Similarity=0.360 Sum_probs=58.7
Q ss_pred cccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCc
Q 038633 11 LHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKEL 90 (176)
Q Consensus 11 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L 90 (176)
+..+++|+.|++++|.+.+..+..+..+.+|++|++++|.+.+..|..+..+++|++|++++|.+.+. .|..++.+++|
T Consensus 160 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L 238 (968)
T PLN00113 160 IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGE-IPYEIGGLTSL 238 (968)
T ss_pred HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCc-CChhHhcCCCC
Confidence 44455555555555555554444445555555555555555555555555555555555555555443 45555555555
Q ss_pred cEEEeecccCCCCcchhccCCCCCCEEEccCCcc
Q 038633 91 RYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLD 124 (176)
Q Consensus 91 ~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~ 124 (176)
++|++++|.+.+..|..++.+++|+.|++.+|.+
T Consensus 239 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 272 (968)
T PLN00113 239 NHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKL 272 (968)
T ss_pred CEEECcCceeccccChhHhCCCCCCEEECcCCee
Confidence 5555555554444444444444455554444443
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.77 E-value=1.4e-20 Score=144.55 Aligned_cols=163 Identities=22% Similarity=0.133 Sum_probs=100.0
Q ss_pred cccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcC
Q 038633 9 SDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLK 88 (176)
Q Consensus 9 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~ 88 (176)
..+..+++++.|.+..|.|.+.-...|..+.++++|+|+.|+++..-...+.+++.|+.|++++|.+..+ -++.+...+
T Consensus 239 ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~ri-h~d~Wsftq 317 (873)
T KOG4194|consen 239 LTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRI-HIDSWSFTQ 317 (873)
T ss_pred hhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhhee-ecchhhhcc
Confidence 3455566666666666666666666677777777777777777655555566777777777777777766 566666777
Q ss_pred CccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcc-------------------------cccccccCCCCCccEE
Q 038633 89 ELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSN-------------------------QIGLGWLSGLPSLKYL 143 (176)
Q Consensus 89 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~-------------------------~~~~~~~~~l~~L~~L 143 (176)
+|++|++++|+++.-.++.|..+..|+.|+++.|.+... .+....|.++++|+.|
T Consensus 318 kL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL 397 (873)
T KOG4194|consen 318 KLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKL 397 (873)
T ss_pred cceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhe
Confidence 777777777777643344455555555555555554211 1122335556666666
Q ss_pred eccCCCCCCchhhhHHHhhccccCcEeeCcCC
Q 038633 144 NLGGADLSKDAAYWLESISMLRSLVELRLPNC 175 (176)
Q Consensus 144 ~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n 175 (176)
++.+|++...+.. ++.++++|++|+|.+|
T Consensus 398 ~l~gNqlk~I~kr---Afsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 398 RLTGNQLKSIPKR---AFSGLEALEHLDLGDN 426 (873)
T ss_pred eecCceeeecchh---hhccCcccceecCCCC
Confidence 6666666544443 5555666666666665
No 4
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.71 E-value=1.5e-19 Score=120.01 Aligned_cols=157 Identities=21% Similarity=0.197 Sum_probs=134.0
Q ss_pred cccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcC
Q 038633 9 SDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLK 88 (176)
Q Consensus 9 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~ 88 (176)
+.+-.+.+++.|.+++|.+.. +++....+.+|+.|++++|+++ +.|..+..+++|+.|+++.|.+. ..|..|++++
T Consensus 27 ~gLf~~s~ITrLtLSHNKl~~-vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~--~lprgfgs~p 102 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNKLTV-VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN--ILPRGFGSFP 102 (264)
T ss_pred ccccchhhhhhhhcccCceee-cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh--cCccccCCCc
Confidence 344456778889999988765 4566788899999999999995 78999999999999999999988 6899999999
Q ss_pred CccEEEeecccCC-CCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccC
Q 038633 89 ELRYLNLSGSFFS-GTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSL 167 (176)
Q Consensus 89 ~L~~L~l~~~~~~-~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L 167 (176)
-|+.||+.+|.+. ..+|..|..+..|+.|.++.|.++..+-+ ++.+++|++|.+..|.+...+. .++.++.|
T Consensus 103 ~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~d---vg~lt~lqil~lrdndll~lpk----eig~lt~l 175 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPD---VGKLTNLQILSLRDNDLLSLPK----EIGDLTRL 175 (264)
T ss_pred hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChh---hhhhcceeEEeeccCchhhCcH----HHHHHHHH
Confidence 9999999999885 36888888999999999999998655443 7899999999999999986654 77888999
Q ss_pred cEeeCcCCC
Q 038633 168 VELRLPNCN 176 (176)
Q Consensus 168 ~~L~l~~n~ 176 (176)
++|++.+|.
T Consensus 176 relhiqgnr 184 (264)
T KOG0617|consen 176 RELHIQGNR 184 (264)
T ss_pred HHHhcccce
Confidence 999999884
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.71 E-value=5.6e-18 Score=130.46 Aligned_cols=163 Identities=21% Similarity=0.158 Sum_probs=98.4
Q ss_pred cccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcC
Q 038633 9 SDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLK 88 (176)
Q Consensus 9 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~ 88 (176)
..+...+.++.|||+.|.|.+.....+..-.++++|+|++|.|+......|..+.+|..|.++.|.++.. .+..|+.++
T Consensus 143 e~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittL-p~r~Fk~L~ 221 (873)
T KOG4194|consen 143 EELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTL-PQRSFKRLP 221 (873)
T ss_pred HHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccccc-CHHHhhhcc
Confidence 3455566777777777777776666666667777777777777766666777777777777777777733 334455577
Q ss_pred CccEEEeecccCCCCcchhccCCCCCCEEEccCCccCc----------------------ccccccccCCCCCccEEecc
Q 038633 89 ELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQS----------------------NQIGLGWLSGLPSLKYLNLG 146 (176)
Q Consensus 89 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~----------------------~~~~~~~~~~l~~L~~L~l~ 146 (176)
.|+.|++..|++...---.|.++++|+.+.+..|.+.. .....+++.+++.|+.|+++
T Consensus 222 ~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS 301 (873)
T KOG4194|consen 222 KLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLS 301 (873)
T ss_pred hhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccc
Confidence 77777777776642212334455555555555444411 11222334455555555555
Q ss_pred CCCCCCchhhhHHHhhccccCcEeeCcCC
Q 038633 147 GADLSKDAAYWLESISMLRSLVELRLPNC 175 (176)
Q Consensus 147 ~n~l~~~~~~~~~~l~~~~~L~~L~l~~n 175 (176)
.|.+.....+ .|+..++|++|+|+.|
T Consensus 302 ~NaI~rih~d---~WsftqkL~~LdLs~N 327 (873)
T KOG4194|consen 302 YNAIQRIHID---SWSFTQKLKELDLSSN 327 (873)
T ss_pred hhhhheeecc---hhhhcccceeEecccc
Confidence 5555555444 5666666666666665
No 6
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.60 E-value=4.1e-17 Score=108.51 Aligned_cols=134 Identities=28% Similarity=0.330 Sum_probs=118.3
Q ss_pred CcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCC
Q 038633 34 QPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTN 113 (176)
Q Consensus 34 ~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~ 113 (176)
....+++++.|-++.|.++ .+|..+..+.+|+.|++.+|++. +.|..+++++.|+.|++..|++. ..|..|+.++.
T Consensus 28 gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie--~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~ 103 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE--ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPA 103 (264)
T ss_pred cccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh--hcChhhhhchhhhheecchhhhh-cCccccCCCch
Confidence 4466778889999999996 67888999999999999999999 79999999999999999999997 89999999999
Q ss_pred CCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCCC
Q 038633 114 LLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN 176 (176)
Q Consensus 114 L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n~ 176 (176)
|+.||+.+|.+... ..++.|..+..|+.|++++|.+.-.++ .++.+++|+.|.+++|.
T Consensus 104 levldltynnl~e~-~lpgnff~m~tlralyl~dndfe~lp~----dvg~lt~lqil~lrdnd 161 (264)
T KOG0617|consen 104 LEVLDLTYNNLNEN-SLPGNFFYMTTLRALYLGDNDFEILPP----DVGKLTNLQILSLRDND 161 (264)
T ss_pred hhhhhccccccccc-cCCcchhHHHHHHHHHhcCCCcccCCh----hhhhhcceeEEeeccCc
Confidence 99999999998432 334457888999999999999986655 78999999999999884
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.55 E-value=9.7e-16 Score=119.60 Aligned_cols=158 Identities=23% Similarity=0.224 Sum_probs=121.3
Q ss_pred cccccccceeeccCcccc-CCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhh-hcCcC
Q 038633 11 LHLLSRIFALSLLRCCSV-GSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEF-IGSLK 88 (176)
Q Consensus 11 ~~~~~~l~~l~l~~~~~~-~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~-~~~l~ 88 (176)
+..++.|+.+.+..|++. ..+|...+++..|+.||++.|++. +.|..+-+-.++-.|++++|+|. ++|.. +-.++
T Consensus 74 Ls~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie--tIPn~lfinLt 150 (1255)
T KOG0444|consen 74 LSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE--TIPNSLFINLT 150 (1255)
T ss_pred hccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc--cCCchHHHhhH
Confidence 344567777777777764 466777888899999999999984 78988888899999999999998 67765 44788
Q ss_pred CccEEEeecccCCCCcchhccCCCCCCEEEccCCccC-----------------------cccccccccCCCCCccEEec
Q 038633 89 ELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQ-----------------------SNQIGLGWLSGLPSLKYLNL 145 (176)
Q Consensus 89 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~-----------------------~~~~~~~~~~~l~~L~~L~l 145 (176)
.|-+||+++|++. .+|+.+..+..|++|.+++|++. +....+..+..+.+|+.+|+
T Consensus 151 DLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDl 229 (1255)
T KOG0444|consen 151 DLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDL 229 (1255)
T ss_pred hHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccc
Confidence 8999999999987 88888888889999999998871 01122334566677788888
Q ss_pred cCCCCCCchhhhHHHhhccccCcEeeCcCCC
Q 038633 146 GGADLSKDAAYWLESISMLRSLVELRLPNCN 176 (176)
Q Consensus 146 ~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n~ 176 (176)
+.|.+. ..|+ .+..+++|+.|+|++|+
T Consensus 230 S~N~Lp-~vPe---cly~l~~LrrLNLS~N~ 256 (1255)
T KOG0444|consen 230 SENNLP-IVPE---CLYKLRNLRRLNLSGNK 256 (1255)
T ss_pred cccCCC-cchH---HHhhhhhhheeccCcCc
Confidence 888775 4444 66778888888888874
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.52 E-value=6.6e-16 Score=120.51 Aligned_cols=152 Identities=23% Similarity=0.230 Sum_probs=86.5
Q ss_pred cccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCC----------------
Q 038633 15 SRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGF---------------- 78 (176)
Q Consensus 15 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~---------------- 78 (176)
++..+|++++|+|..+..+.+.++..|-+||++.|++. .+|+.++++..|++|++++|.+.-.
T Consensus 126 Kn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhm 204 (1255)
T KOG0444|consen 126 KNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHM 204 (1255)
T ss_pred cCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhc
Confidence 45566677776666665555666666667777777773 5666667777777777777755421
Q ss_pred --------cchhhhcCcCCccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCC
Q 038633 79 --------KVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADL 150 (176)
Q Consensus 79 --------~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l 150 (176)
.+|.++-.+.+|..+|++.|.+. ..|+.++.+++|+.|++++|+++........| .+|++|+|+.|++
T Consensus 205 s~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W---~~lEtLNlSrNQL 280 (1255)
T KOG0444|consen 205 SNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEW---ENLETLNLSRNQL 280 (1255)
T ss_pred ccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeeccHHHH---hhhhhhccccchh
Confidence 14444444555555555555554 55666666666666666666664333322222 2355566666665
Q ss_pred CCchhhhHHHhhccccCcEeeCcCC
Q 038633 151 SKDAAYWLESISMLRSLVELRLPNC 175 (176)
Q Consensus 151 ~~~~~~~~~~l~~~~~L~~L~l~~n 175 (176)
+..|. .+.+++.|+.|.+.+|
T Consensus 281 t~LP~----avcKL~kL~kLy~n~N 301 (1255)
T KOG0444|consen 281 TVLPD----AVCKLTKLTKLYANNN 301 (1255)
T ss_pred ccchH----HHhhhHHHHHHHhccC
Confidence 53332 4444555555554444
No 9
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.48 E-value=2.9e-14 Score=106.15 Aligned_cols=15 Identities=13% Similarity=-0.124 Sum_probs=7.2
Q ss_pred ccccceeeccCcccc
Q 038633 14 LSRIFALSLLRCCSV 28 (176)
Q Consensus 14 ~~~l~~l~l~~~~~~ 28 (176)
+++++.|++++|.+.
T Consensus 80 ~~~L~~L~l~~~~~~ 94 (319)
T cd00116 80 GCGLQELDLSDNALG 94 (319)
T ss_pred cCceeEEEccCCCCC
Confidence 344555555554443
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.48 E-value=2.9e-15 Score=111.20 Aligned_cols=122 Identities=29% Similarity=0.326 Sum_probs=88.5
Q ss_pred ecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCCCCEEEccCCcc
Q 038633 45 DDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLD 124 (176)
Q Consensus 45 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~ 124 (176)
.++.|.+ +.+|..++.+++|..|++++|.+. .+|..++.+..||.++++.|++- ..|+.++.+..++.+-.+.|.+
T Consensus 418 ~lsnn~i-sfv~~~l~~l~kLt~L~L~NN~Ln--~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi 493 (565)
T KOG0472|consen 418 VLSNNKI-SFVPLELSQLQKLTFLDLSNNLLN--DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQI 493 (565)
T ss_pred HhhcCcc-ccchHHHHhhhcceeeecccchhh--hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccc
Confidence 3343433 345666677788888888888777 57777777777888888888775 7777777777777776666766
Q ss_pred CcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCCC
Q 038633 125 QSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN 176 (176)
Q Consensus 125 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n~ 176 (176)
. ..+...+.+|.+|.+||+..|.+...|| .++.|++|++|.+++|.
T Consensus 494 ~--~vd~~~l~nm~nL~tLDL~nNdlq~IPp----~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 494 G--SVDPSGLKNMRNLTTLDLQNNDLQQIPP----ILGNMTNLRHLELDGNP 539 (565)
T ss_pred c--ccChHHhhhhhhcceeccCCCchhhCCh----hhccccceeEEEecCCc
Confidence 3 2333346788888888888888886655 78888888888888873
No 11
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.46 E-value=9.1e-14 Score=94.35 Aligned_cols=125 Identities=33% Similarity=0.315 Sum_probs=36.2
Q ss_pred cceEeecCCCCccccchhhhc-CCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhc-cCCCCCCEE
Q 038633 40 FDTYEDDAGHELGGPISPSLL-QLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSL-GNLTNLLYL 117 (176)
Q Consensus 40 ~l~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~-~~l~~L~~L 117 (176)
.+++|++.+|.|+.. . .+. .+.+|+.|++++|.+.. + +.+..+++|++|++++|++. .+++.+ ..+++|+.|
T Consensus 20 ~~~~L~L~~n~I~~I-e-~L~~~l~~L~~L~Ls~N~I~~--l-~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 20 KLRELNLRGNQISTI-E-NLGATLDKLEVLDLSNNQITK--L-EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQEL 93 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S-----TT----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred ccccccccccccccc-c-chhhhhcCCCEEECCCCCCcc--c-cCccChhhhhhcccCCCCCC-ccccchHHhCCcCCEE
Confidence 455566666665432 1 222 35566666666666662 2 23445566666666666665 333322 245666666
Q ss_pred EccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEee
Q 038633 118 DLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELR 171 (176)
Q Consensus 118 ~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ 171 (176)
++++|++..... ...+..+++|++|++.+|.+.....--.-.+..+|+|+.||
T Consensus 94 ~L~~N~I~~l~~-l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 94 YLSNNKISDLNE-LEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp E-TTS---SCCC-CGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred ECcCCcCCChHH-hHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence 666666633222 22345566666666666666543221112345566666655
No 12
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.44 E-value=1e-13 Score=103.14 Aligned_cols=164 Identities=21% Similarity=0.121 Sum_probs=101.3
Q ss_pred ccccccceeeccCccccC------CCCcCcccCCcceEeecCCCCccccchhhhcCCCC---CcEEEccCccccCCc---
Q 038633 12 HLLSRIFALSLLRCCSVG------SALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKD---LKYLDLSMNNFKGFK--- 79 (176)
Q Consensus 12 ~~~~~l~~l~l~~~~~~~------~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~---L~~L~l~~~~~~~~~--- 79 (176)
...++++.+++.++.+.. ..+.....+.++++|++++|.+.+..+..+..+.. |++|++++|.+....
T Consensus 48 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~ 127 (319)
T cd00116 48 RPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRL 127 (319)
T ss_pred hhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHH
Confidence 345567888888776642 11123445678888888888887666666655555 888888888776320
Q ss_pred chhhhcCc-CCccEEEeecccCCCC----cchhccCCCCCCEEEccCCccCccc--ccccccCCCCCccEEeccCCCCCC
Q 038633 80 VPEFIGSL-KELRYLNLSGSFFSGT----IPQSLGNLTNLLYLDLNNFLDQSNQ--IGLGWLSGLPSLKYLNLGGADLSK 152 (176)
Q Consensus 80 ~p~~~~~l-~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~~l~~L~~L~l~~n~l~~ 152 (176)
+...+..+ ++|+.|++++|.+.+. .+..+..++.|+.|++++|.++... .....+..+++|++|++++|.+.+
T Consensus 128 l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 207 (319)
T cd00116 128 LAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTD 207 (319)
T ss_pred HHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccCh
Confidence 22344455 7788888888887632 2334455667888888777764211 111223445677777777777764
Q ss_pred chhh-hHHHhhccccCcEeeCcCC
Q 038633 153 DAAY-WLESISMLRSLVELRLPNC 175 (176)
Q Consensus 153 ~~~~-~~~~l~~~~~L~~L~l~~n 175 (176)
.... +...+..+++|++|++++|
T Consensus 208 ~~~~~l~~~~~~~~~L~~L~ls~n 231 (319)
T cd00116 208 EGASALAETLASLKSLEVLNLGDN 231 (319)
T ss_pred HHHHHHHHHhcccCCCCEEecCCC
Confidence 4332 2234455677777777776
No 13
>PLN03150 hypothetical protein; Provisional
Probab=99.42 E-value=6.9e-13 Score=106.88 Aligned_cols=106 Identities=31% Similarity=0.411 Sum_probs=60.0
Q ss_pred cceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEee
Q 038633 17 IFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLS 96 (176)
Q Consensus 17 l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~ 96 (176)
++.|+|+++.+.+..+.....+.+|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+. +|..++.+++|++|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~-iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS-IPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCC-CchHHhcCCCCCEEECc
Confidence 55555665555555555555555566666666666555555555666666666666665554 55555556666666666
Q ss_pred cccCCCCcchhccCC-CCCCEEEccCCc
Q 038633 97 GSFFSGTIPQSLGNL-TNLLYLDLNNFL 123 (176)
Q Consensus 97 ~~~~~~~~p~~~~~l-~~L~~L~l~~n~ 123 (176)
+|++.+.+|..++.. ..+..+++.+|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCc
Confidence 666555555554432 234455555554
No 14
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.41 E-value=1e-14 Score=107.97 Aligned_cols=63 Identities=11% Similarity=-0.129 Sum_probs=42.9
Q ss_pred ccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccC-cccc
Q 038633 14 LSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSM-NNFK 76 (176)
Q Consensus 14 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~-~~~~ 76 (176)
....+.++|+.|.|....+..|..+.+|+.|||+.|.|+.+.|++|.++.++.+|-+-+ |+|+
T Consensus 66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~ 129 (498)
T KOG4237|consen 66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT 129 (498)
T ss_pred CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence 34566677777777777777777777777777777777777777777776666654433 5555
No 15
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.36 E-value=6.6e-13 Score=90.15 Aligned_cols=132 Identities=23% Similarity=0.117 Sum_probs=52.7
Q ss_pred ccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhh-cCcC
Q 038633 10 DLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFI-GSLK 88 (176)
Q Consensus 10 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~-~~l~ 88 (176)
.+..+..++.|++.++.|..... ....+.+++.|++++|.++.. ..+..++.|++|++++|.++. +++.+ ..++
T Consensus 14 ~~~n~~~~~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~--i~~~l~~~lp 88 (175)
T PF14580_consen 14 QYNNPVKLRELNLRGNQISTIEN-LGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS--ISEGLDKNLP 88 (175)
T ss_dssp ----------------------S---TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S---CHHHHHH-T
T ss_pred ccccccccccccccccccccccc-hhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc--cccchHHhCC
Confidence 34455678999999999977532 223567899999999999753 347789999999999999994 44444 4689
Q ss_pred CccEEEeecccCCCC-cchhccCCCCCCEEEccCCccCcc-cccccccCCCCCccEEecc
Q 038633 89 ELRYLNLSGSFFSGT-IPQSLGNLTNLLYLDLNNFLDQSN-QIGLGWLSGLPSLKYLNLG 146 (176)
Q Consensus 89 ~L~~L~l~~~~~~~~-~p~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~~l~~L~~L~l~ 146 (176)
+|++|++++|++... .-..++.+++|+.|++.+|++... ..-...+..+++|+.||-.
T Consensus 89 ~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 89 NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 999999999999632 224577899999999999998322 2223346789999998643
No 16
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.35 E-value=1.5e-11 Score=105.31 Aligned_cols=83 Identities=23% Similarity=0.307 Sum_probs=43.5
Q ss_pred CccEEEeecccCCCCcchhccCCCCCCEEEccCCcc-Ccccccc-----------------cccCCCCCccEEeccCCCC
Q 038633 89 ELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLD-QSNQIGL-----------------GWLSGLPSLKYLNLGGADL 150 (176)
Q Consensus 89 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~-~~~~~~~-----------------~~~~~l~~L~~L~l~~n~l 150 (176)
+|+.|++++|.....+|..++.+++|+.|++.+|.. ...+... .......+|+.|++++|.+
T Consensus 779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i 858 (1153)
T PLN03210 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGI 858 (1153)
T ss_pred cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCC
Confidence 455555555544445555555555566666555431 1111000 0001124566777777777
Q ss_pred CCchhhhHHHhhccccCcEeeCcCC
Q 038633 151 SKDAAYWLESISMLRSLVELRLPNC 175 (176)
Q Consensus 151 ~~~~~~~~~~l~~~~~L~~L~l~~n 175 (176)
... |. .++.+++|+.|++.+|
T Consensus 859 ~~i-P~---si~~l~~L~~L~L~~C 879 (1153)
T PLN03210 859 EEV-PW---WIEKFSNLSFLDMNGC 879 (1153)
T ss_pred ccC-hH---HHhcCCCCCEEECCCC
Confidence 643 33 5667778888877775
No 17
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.34 E-value=1.7e-11 Score=105.05 Aligned_cols=104 Identities=20% Similarity=0.095 Sum_probs=49.3
Q ss_pred ccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEE
Q 038633 14 LSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYL 93 (176)
Q Consensus 14 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L 93 (176)
..+|+.|++.++.+... +.....+.+|+.|+++++.....+|. +..+++|++|++++|..... +|..+..+++|+.|
T Consensus 610 ~~~L~~L~L~~s~l~~L-~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~-lp~si~~L~~L~~L 686 (1153)
T PLN03210 610 PENLVKLQMQGSKLEKL-WDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVE-LPSSIQYLNKLEDL 686 (1153)
T ss_pred ccCCcEEECcCcccccc-ccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccc-cchhhhccCCCCEE
Confidence 34566666666554332 22334455555555555432233332 44555555555555543332 55555555555555
Q ss_pred EeecccCCCCcchhccCCCCCCEEEccC
Q 038633 94 NLSGSFFSGTIPQSLGNLTNLLYLDLNN 121 (176)
Q Consensus 94 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~ 121 (176)
++++|...+.+|..+ .+++|+.|++.+
T Consensus 687 ~L~~c~~L~~Lp~~i-~l~sL~~L~Lsg 713 (1153)
T PLN03210 687 DMSRCENLEILPTGI-NLKSLYRLNLSG 713 (1153)
T ss_pred eCCCCCCcCccCCcC-CCCCCCEEeCCC
Confidence 555543333444332 334444444443
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.33 E-value=1.2e-13 Score=111.38 Aligned_cols=126 Identities=31% Similarity=0.303 Sum_probs=86.0
Q ss_pred cceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcch-hhhcCcCCccEEEeecccCCCCcchhccCCCCCCEEE
Q 038633 40 FDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVP-EFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLD 118 (176)
Q Consensus 40 ~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 118 (176)
.|+.|.+.+|.+++..-+.+-++..|+.|+|++|.+. .+| ..+.++..|++|++++|.++ .+|..+..++.|+.|.
T Consensus 360 ~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~--~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ 436 (1081)
T KOG0618|consen 360 ALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN--SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLR 436 (1081)
T ss_pred HHHHHHHhcCcccccchhhhccccceeeeeecccccc--cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHh
Confidence 4556677777777776677777777777777777777 344 35667777777777777776 6677777777777777
Q ss_pred ccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCC
Q 038633 119 LNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNC 175 (176)
Q Consensus 119 l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n 175 (176)
..+|.+...+. +..++.|+.+|++.|.+....-. ....+++|++||++||
T Consensus 437 ahsN~l~~fPe----~~~l~qL~~lDlS~N~L~~~~l~---~~~p~p~LkyLdlSGN 486 (1081)
T KOG0618|consen 437 AHSNQLLSFPE----LAQLPQLKVLDLSCNNLSEVTLP---EALPSPNLKYLDLSGN 486 (1081)
T ss_pred hcCCceeechh----hhhcCcceEEecccchhhhhhhh---hhCCCcccceeeccCC
Confidence 77777754443 56677777777777777644322 2222367777777776
No 19
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.32 E-value=1.5e-14 Score=107.44 Aligned_cols=154 Identities=23% Similarity=0.192 Sum_probs=77.5
Q ss_pred ccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCC
Q 038633 10 DLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKE 89 (176)
Q Consensus 10 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~ 89 (176)
++..+..+..++..+|++... |+....+..+..+++.+|.++...|..+ +++.|+.+|...|-+. .+|+.++.|.+
T Consensus 132 ~i~~~~~l~dl~~~~N~i~sl-p~~~~~~~~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld~~~N~L~--tlP~~lg~l~~ 207 (565)
T KOG0472|consen 132 SIGRLLDLEDLDATNNQISSL-PEDMVNLSKLSKLDLEGNKLKALPENHI-AMKRLKHLDCNSNLLE--TLPPELGGLES 207 (565)
T ss_pred hHHHHhhhhhhhccccccccC-chHHHHHHHHHHhhccccchhhCCHHHH-HHHHHHhcccchhhhh--cCChhhcchhh
Confidence 444555666666666555443 3444555555566666666643333333 3666666666666555 45666666666
Q ss_pred ccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcE
Q 038633 90 LRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVE 169 (176)
Q Consensus 90 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~ 169 (176)
|+-|++..|.+. .+| .|.++..|..+.++.|.+++.+. ....+++++.+||+.+|++...|. .+..+.+|+.
T Consensus 208 L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpa--e~~~~L~~l~vLDLRdNklke~Pd----e~clLrsL~r 279 (565)
T KOG0472|consen 208 LELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPA--EHLKHLNSLLVLDLRDNKLKEVPD----EICLLRSLER 279 (565)
T ss_pred hHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHH--HHhcccccceeeeccccccccCch----HHHHhhhhhh
Confidence 666666666554 444 34444445555555554432222 113344455555555555443322 3333444445
Q ss_pred eeCcCC
Q 038633 170 LRLPNC 175 (176)
Q Consensus 170 L~l~~n 175 (176)
||+++|
T Consensus 280 LDlSNN 285 (565)
T KOG0472|consen 280 LDLSNN 285 (565)
T ss_pred hcccCC
Confidence 554444
No 20
>PLN03150 hypothetical protein; Provisional
Probab=99.30 E-value=1.3e-11 Score=99.56 Aligned_cols=109 Identities=31% Similarity=0.367 Sum_probs=90.5
Q ss_pred cceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCCCCEEEc
Q 038633 40 FDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDL 119 (176)
Q Consensus 40 ~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l 119 (176)
.++.|+|++|.+.+.+|..+..+++|+.|++++|.+.+. +|..+..+++|+.|++++|++.+..|+.++.+++|+.|++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 477899999999999999999999999999999999887 9999999999999999999999889999999999999999
Q ss_pred cCCccCcccccccccCC-CCCccEEeccCCCCC
Q 038633 120 NNFLDQSNQIGLGWLSG-LPSLKYLNLGGADLS 151 (176)
Q Consensus 120 ~~n~~~~~~~~~~~~~~-l~~L~~L~l~~n~l~ 151 (176)
++|.+. ...+..+.. ..++..+++.+|...
T Consensus 498 s~N~l~--g~iP~~l~~~~~~~~~l~~~~N~~l 528 (623)
T PLN03150 498 NGNSLS--GRVPAALGGRLLHRASFNFTDNAGL 528 (623)
T ss_pred cCCccc--ccCChHHhhccccCceEEecCCccc
Confidence 999883 233333333 235667888888643
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.28 E-value=6.3e-13 Score=107.33 Aligned_cols=136 Identities=21% Similarity=0.188 Sum_probs=111.5
Q ss_pred ccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEE
Q 038633 14 LSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYL 93 (176)
Q Consensus 14 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L 93 (176)
...|..|.+.+|.+....-+......+|+.|+|++|++...-...+.++..|++|+++||.++ .+|..+..+..|++|
T Consensus 358 ~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~--~Lp~tva~~~~L~tL 435 (1081)
T KOG0618|consen 358 HAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT--TLPDTVANLGRLHTL 435 (1081)
T ss_pred hHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh--hhhHHHHhhhhhHHH
Confidence 456778888899988877777888899999999999997655666889999999999999999 789999999999999
Q ss_pred EeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchh
Q 038633 94 NLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAA 155 (176)
Q Consensus 94 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 155 (176)
...+|++. ..| .+..++.|+.+|++.|.++...... -..-++|++||++||.-....-
T Consensus 436 ~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~--~~p~p~LkyLdlSGN~~l~~d~ 493 (1081)
T KOG0618|consen 436 RAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPE--ALPSPNLKYLDLSGNTRLVFDH 493 (1081)
T ss_pred hhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhh--hCCCcccceeeccCCcccccch
Confidence 99999997 888 6778999999999999985433221 1122799999999998433433
No 22
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.24 E-value=9.3e-13 Score=95.04 Aligned_cols=125 Identities=26% Similarity=0.232 Sum_probs=75.6
Q ss_pred cceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCCCCEEEc
Q 038633 40 FDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDL 119 (176)
Q Consensus 40 ~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l 119 (176)
.|+++|+++|.|+ .+..+..-.+.+++|+++.|.+.. + ..+..+++|++||+++|.++ .+-.+-..+.+.++|.+
T Consensus 285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~--v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT--V-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhccccccchh-hhhhhhhhccceeEEeccccceee--e-hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence 4556677777664 445555556667777777776662 2 23556667777777776665 33333334556666666
Q ss_pred cCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCC
Q 038633 120 NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNC 175 (176)
Q Consensus 120 ~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n 175 (176)
++|.++.... +..+.+|..||+.+|++..... +..++.+|-|+++.+.+|
T Consensus 360 a~N~iE~LSG----L~KLYSLvnLDl~~N~Ie~lde--V~~IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 360 AQNKIETLSG----LRKLYSLVNLDLSSNQIEELDE--VNHIGNLPCLETLRLTGN 409 (490)
T ss_pred hhhhHhhhhh----hHhhhhheeccccccchhhHHH--hcccccccHHHHHhhcCC
Confidence 6666643322 4566677777777777753322 346677777777777766
No 23
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.22 E-value=6.4e-11 Score=96.67 Aligned_cols=34 Identities=21% Similarity=0.128 Sum_probs=23.0
Q ss_pred CccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCCC
Q 038633 139 SLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN 176 (176)
Q Consensus 139 ~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n~ 176 (176)
+|+.|++++|++... |. .+..++.|+.|++++|+
T Consensus 423 ~L~~L~Ls~NqLt~L-P~---sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 423 GLLSLSVYRNQLTRL-PE---SLIHLSSETTVNLEGNP 456 (788)
T ss_pred hhhhhhhccCccccc-Ch---HHhhccCCCeEECCCCC
Confidence 455566666666533 33 56678888899998884
No 24
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.22 E-value=3.6e-11 Score=98.19 Aligned_cols=56 Identities=16% Similarity=0.106 Sum_probs=26.6
Q ss_pred cccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCcccc
Q 038633 15 SRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFK 76 (176)
Q Consensus 15 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~ 76 (176)
+.++.|++++|.+.... ... ..+|+.|++++|.++ .+|..+. ..|+.|++++|.+.
T Consensus 199 ~~L~~L~Ls~N~LtsLP-~~l--~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~ 254 (754)
T PRK15370 199 EQITTLILDNNELKSLP-ENL--QGNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT 254 (754)
T ss_pred cCCcEEEecCCCCCcCC-hhh--ccCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC
Confidence 45666666666655432 211 134555555555554 2343321 23444444444444
No 25
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.19 E-value=3.3e-11 Score=98.46 Aligned_cols=146 Identities=14% Similarity=0.096 Sum_probs=81.4
Q ss_pred cccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhc-------------------CCCCCcEEEccCccc
Q 038633 15 SRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLL-------------------QLKDLKYLDLSMNNF 75 (176)
Q Consensus 15 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~-------------------~l~~L~~L~l~~~~~ 75 (176)
.+|+.|++++|.+.. .|... ...|+.|++++|.++. +|..+. -.++|++|++++|.+
T Consensus 262 s~L~~L~Ls~N~L~~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~L 337 (754)
T PRK15370 262 SALQSLDLFHNKISC-LPENL--PEELRYLSVYDNSIRT-LPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENAL 337 (754)
T ss_pred CCCCEEECcCCccCc-ccccc--CCCCcEEECCCCcccc-CcccchhhHHHHHhcCCccccCCccccccceeccccCCcc
Confidence 467778888777764 23222 2367777777777753 332221 123455666666655
Q ss_pred cCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchh
Q 038633 76 KGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAA 155 (176)
Q Consensus 76 ~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 155 (176)
+ .+|..+. ++|+.|++++|++. .+|..+ .++|+.|++++|.++..+.. + ..+|+.|++++|++...+.
T Consensus 338 t--~LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~LP~~---l--~~sL~~LdLs~N~L~~LP~ 405 (754)
T PRK15370 338 T--SLPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTNLPEN---L--PAALQIMQASRNNLVRLPE 405 (754)
T ss_pred c--cCChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCCCCHh---H--HHHHHHHhhccCCcccCch
Confidence 5 3444432 46666666666665 455443 24666777777666422211 1 1256667777777764443
Q ss_pred hhHHHhhccccCcEeeCcCCC
Q 038633 156 YWLESISMLRSLVELRLPNCN 176 (176)
Q Consensus 156 ~~~~~l~~~~~L~~L~l~~n~ 176 (176)
..+...+..+.+..+++.+|.
T Consensus 406 sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 406 SLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred hHHHHhhcCCCccEEEeeCCC
Confidence 322233445777788887773
No 26
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.17 E-value=1.4e-12 Score=96.83 Aligned_cols=130 Identities=25% Similarity=0.248 Sum_probs=107.6
Q ss_pred CcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeec-ccCCCCcc-hhccCCCCCCE
Q 038633 39 SFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSG-SFFSGTIP-QSLGNLTNLLY 116 (176)
Q Consensus 39 ~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~-~~~~~~~p-~~~~~l~~L~~ 116 (176)
...++++|..|.|+..-+.+|..+.+|+.||++.|.|+.+ .|.+|.++.++..|.+.+ |+|+ .+| ..|+++.+++.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I-~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqr 144 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFI-APDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQR 144 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhc-ChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHH
Confidence 4567889999999988889999999999999999999998 999999999988888776 8887 555 56889999999
Q ss_pred EEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCC
Q 038633 117 LDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNC 175 (176)
Q Consensus 117 L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n 175 (176)
|.+.-|++ ......+++.++++..|.+.+|.+...... .+..+..++.+++..|
T Consensus 145 LllNan~i--~Cir~~al~dL~~l~lLslyDn~~q~i~~~---tf~~l~~i~tlhlA~n 198 (498)
T KOG4237|consen 145 LLLNANHI--NCIRQDALRDLPSLSLLSLYDNKIQSICKG---TFQGLAAIKTLHLAQN 198 (498)
T ss_pred HhcChhhh--cchhHHHHHHhhhcchhcccchhhhhhccc---cccchhccchHhhhcC
Confidence 99988888 555556789999999999999988755443 5566777777777655
No 27
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.13 E-value=4.7e-10 Score=91.72 Aligned_cols=54 Identities=15% Similarity=0.032 Sum_probs=27.6
Q ss_pred cccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCcccc
Q 038633 15 SRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFK 76 (176)
Q Consensus 15 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~ 76 (176)
++++.|++.+|.+.... . ...+|++|++++|.++. +|.. .++|+.|++++|.+.
T Consensus 222 ~~L~~L~L~~N~Lt~LP-~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls~N~L~ 275 (788)
T PRK15387 222 AHITTLVIPDNNLTSLP-A---LPPELRTLEVSGNQLTS-LPVL---PPGLLELSIFSNPLT 275 (788)
T ss_pred cCCCEEEccCCcCCCCC-C---CCCCCcEEEecCCccCc-ccCc---ccccceeeccCCchh
Confidence 35666666666655421 1 23566667777766653 3321 234444444444444
No 28
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.10 E-value=8.3e-11 Score=66.38 Aligned_cols=58 Identities=33% Similarity=0.391 Sum_probs=25.5
Q ss_pred ceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeeccc
Q 038633 41 DTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSF 99 (176)
Q Consensus 41 l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~ 99 (176)
|++|++++|.++...+..|.++++|++|++++|.+... .|..+..+++|++|++++|+
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i-~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSI-PPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEE-ETTTTTTSTTESEEEETSSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCcc-CHHHHcCCCCCCEEeCcCCc
Confidence 44444444444433333444444444444444444432 33344444444444444443
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.09 E-value=1.8e-11 Score=88.44 Aligned_cols=138 Identities=19% Similarity=0.134 Sum_probs=109.7
Q ss_pred cccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcC
Q 038633 9 SDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLK 88 (176)
Q Consensus 9 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~ 88 (176)
.......-++++|+++|.|... .+.....+.++.|+++.|.+... . .+..+++|+.||+++|.++ .+...-..+.
T Consensus 278 ~~~dTWq~LtelDLS~N~I~~i-DESvKL~Pkir~L~lS~N~i~~v-~-nLa~L~~L~~LDLS~N~Ls--~~~Gwh~KLG 352 (490)
T KOG1259|consen 278 VSADTWQELTELDLSGNLITQI-DESVKLAPKLRRLILSQNRIRTV-Q-NLAELPQLQLLDLSGNLLA--ECVGWHLKLG 352 (490)
T ss_pred EecchHhhhhhccccccchhhh-hhhhhhccceeEEeccccceeee-h-hhhhcccceEeecccchhH--hhhhhHhhhc
Confidence 3444567789999999988653 45566778899999999999643 3 3888999999999999988 4555545788
Q ss_pred CccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCch
Q 038633 89 ELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDA 154 (176)
Q Consensus 89 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 154 (176)
+++.|.+++|.+. ....++.+-+|..||+.+|+++.... .+.++.++.|+++.|.+|.+.+.+
T Consensus 353 NIKtL~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~lde-V~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 353 NIKTLKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDE-VNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred CEeeeehhhhhHh--hhhhhHhhhhheeccccccchhhHHH-hcccccccHHHHHhhcCCCccccc
Confidence 9999999999995 34457788899999999999964433 345889999999999999998664
No 30
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=99.08 E-value=9.8e-11 Score=66.07 Aligned_cols=59 Identities=37% Similarity=0.542 Sum_probs=30.8
Q ss_pred CCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCCCCEEEccCCc
Q 038633 64 DLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFL 123 (176)
Q Consensus 64 ~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~ 123 (176)
+|++|++++|.+... .+..+..+++|++|++++|.+....|..|.++++|+++++++|+
T Consensus 2 ~L~~L~l~~n~l~~i-~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEI-PPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEE-CTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCcc-CHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 455555555555532 33345555555555555555553333445555555555555554
No 31
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.04 E-value=6e-12 Score=97.30 Aligned_cols=99 Identities=28% Similarity=0.331 Sum_probs=46.5
Q ss_pred cceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEee
Q 038633 17 IFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLS 96 (176)
Q Consensus 17 l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~ 96 (176)
|..+.+..|++... ++....+..+++++++.|+++ ..|..++.++ |+.|-+++|+++ .+|+.++..+.|.+||.+
T Consensus 100 Le~liLy~n~~r~i-p~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~--~lp~~ig~~~tl~~ld~s 174 (722)
T KOG0532|consen 100 LESLILYHNCIRTI-PEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT--SLPEEIGLLPTLAHLDVS 174 (722)
T ss_pred HHHHHHHhccceec-chhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc--cCCcccccchhHHHhhhh
Confidence 33444444333322 233344445555555555553 4455555444 555555555555 345555555555555555
Q ss_pred cccCCCCcchhccCCCCCCEEEccC
Q 038633 97 GSFFSGTIPQSLGNLTNLLYLDLNN 121 (176)
Q Consensus 97 ~~~~~~~~p~~~~~l~~L~~L~l~~ 121 (176)
.|.+. .+|..++++.+|+.+++..
T Consensus 175 ~nei~-slpsql~~l~slr~l~vrR 198 (722)
T KOG0532|consen 175 KNEIQ-SLPSQLGYLTSLRDLNVRR 198 (722)
T ss_pred hhhhh-hchHHhhhHHHHHHHHHhh
Confidence 55554 3344444443333333333
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.03 E-value=2.2e-10 Score=87.99 Aligned_cols=148 Identities=26% Similarity=0.292 Sum_probs=87.0
Q ss_pred cccceeeccCccccCCCCcCcccC-CcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEE
Q 038633 15 SRIFALSLLRCCSVGSALAQPFRD-SFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYL 93 (176)
Q Consensus 15 ~~l~~l~l~~~~~~~~~~~~~~~~-~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L 93 (176)
..+..+++.++.+....+. .... .+++.|++++|.+. .+|..+..+++|+.|++++|.+. .+|......+.|+.|
T Consensus 116 ~~l~~L~l~~n~i~~i~~~-~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~--~l~~~~~~~~~L~~L 191 (394)
T COG4886 116 TNLTSLDLDNNNITDIPPL-IGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS--DLPKLLSNLSNLNNL 191 (394)
T ss_pred cceeEEecCCcccccCccc-cccchhhcccccccccchh-hhhhhhhccccccccccCCchhh--hhhhhhhhhhhhhhe
Confidence 4566666666666554322 2222 26667777777664 34445566677777777777666 445444455666666
Q ss_pred EeecccCCCCcchhccCCCCCCEEEccCC-----------------------ccCcccccccccCCCCCccEEeccCCCC
Q 038633 94 NLSGSFFSGTIPQSLGNLTNLLYLDLNNF-----------------------LDQSNQIGLGWLSGLPSLKYLNLGGADL 150 (176)
Q Consensus 94 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~n-----------------------~~~~~~~~~~~~~~l~~L~~L~l~~n~l 150 (176)
++++|++. .+|........|+.+.+++| ++... ...+..+++++.|++++|.+
T Consensus 192 ~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~---~~~~~~l~~l~~L~~s~n~i 267 (394)
T COG4886 192 DLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDL---PESIGNLSNLETLDLSNNQI 267 (394)
T ss_pred eccCCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeec---cchhccccccceeccccccc
Confidence 66666665 44544333344555555555 33111 12355667788888888887
Q ss_pred CCchhhhHHHhhccccCcEeeCcCC
Q 038633 151 SKDAAYWLESISMLRSLVELRLPNC 175 (176)
Q Consensus 151 ~~~~~~~~~~l~~~~~L~~L~l~~n 175 (176)
.... .++...++++|++++|
T Consensus 268 ~~i~-----~~~~~~~l~~L~~s~n 287 (394)
T COG4886 268 SSIS-----SLGSLTNLRELDLSGN 287 (394)
T ss_pred cccc-----cccccCccCEEeccCc
Confidence 6443 2556678888888765
No 33
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=2.9e-11 Score=90.81 Aligned_cols=115 Identities=22% Similarity=0.052 Sum_probs=60.0
Q ss_pred ccccccccceeeccCccccCC--CCcCcccCCcceEeecCCCCccccchhhh-cCCCCCcEEEccCccccCCcchhhhcC
Q 038633 10 DLHLLSRIFALSLLRCCSVGS--ALAQPFRDSFDTYEDDAGHELGGPISPSL-LQLKDLKYLDLSMNNFKGFKVPEFIGS 86 (176)
Q Consensus 10 ~~~~~~~l~~l~l~~~~~~~~--~~~~~~~~~~l~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~p~~~~~ 86 (176)
....|++++.|+++.|.++.. +....-++++|+.|+++.|.+.-...... ..++.|+.|.++.|.++...+......
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~ 220 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT 220 (505)
T ss_pred hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence 345677888888887766543 23345566677777777776543222221 145666677777776664323333334
Q ss_pred cCCccEEEeecccCCCCcchhccCCCCCCEEEccCCcc
Q 038633 87 LKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLD 124 (176)
Q Consensus 87 l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~ 124 (176)
+|+++.|++..|.....-.....-++.|+.|++++|.+
T Consensus 221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~l 258 (505)
T KOG3207|consen 221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNL 258 (505)
T ss_pred CCcHHHhhhhcccccceecchhhhhhHHhhccccCCcc
Confidence 55555555555532111111111234455555555544
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.01 E-value=2.7e-10 Score=87.42 Aligned_cols=107 Identities=31% Similarity=0.324 Sum_probs=84.5
Q ss_pred ccCCcceEeecCCCCccccchhhhcCCC-CCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCCC
Q 038633 36 FRDSFDTYEDDAGHELGGPISPSLLQLK-DLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNL 114 (176)
Q Consensus 36 ~~~~~l~~L~l~~n~l~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L 114 (176)
.....++.|++.+|.++ .++.....+. +|+.|++++|.+. .+|..+..++.|+.|++++|++. ..|...+..+.|
T Consensus 113 ~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~--~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L 188 (394)
T COG4886 113 LELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE--SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNL 188 (394)
T ss_pred hcccceeEEecCCcccc-cCccccccchhhcccccccccchh--hhhhhhhccccccccccCCchhh-hhhhhhhhhhhh
Confidence 33467899999999996 5666666674 9999999999999 67788889999999999999998 777666688999
Q ss_pred CEEEccCCccCcccccccccCCCCCccEEeccCCC
Q 038633 115 LYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGAD 149 (176)
Q Consensus 115 ~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~ 149 (176)
+.+++++|+++..+.. ......|+++.+++|.
T Consensus 189 ~~L~ls~N~i~~l~~~---~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 189 NNLDLSGNKISDLPPE---IELLSALEELDLSNNS 220 (394)
T ss_pred hheeccCCccccCchh---hhhhhhhhhhhhcCCc
Confidence 9999999998544331 1244457777777774
No 35
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.98 E-value=8.2e-11 Score=91.17 Aligned_cols=155 Identities=19% Similarity=0.179 Sum_probs=120.5
Q ss_pred cccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcC
Q 038633 9 SDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLK 88 (176)
Q Consensus 9 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~ 88 (176)
..+..+..++.++++.|.+...... .-.--|+.|-+++|+++ .+|..++....|..||.+.|.+. .+|..++.+.
T Consensus 115 ~~i~~L~~lt~l~ls~NqlS~lp~~--lC~lpLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~--slpsql~~l~ 189 (722)
T KOG0532|consen 115 EAICNLEALTFLDLSSNQLSHLPDG--LCDLPLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ--SLPSQLGYLT 189 (722)
T ss_pred hhhhhhhHHHHhhhccchhhcCChh--hhcCcceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh--hchHHhhhHH
Confidence 3455677888999998888655433 22334788999999995 78888888899999999999998 7899999999
Q ss_pred CccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCc
Q 038633 89 ELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLV 168 (176)
Q Consensus 89 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~ 168 (176)
+|+.|.+..|++. .+|+.+..++ |..||+++|++...+.. |++|+.|++|-|.+|.+...+.+ +..-+...-.+
T Consensus 190 slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis~iPv~---fr~m~~Lq~l~LenNPLqSPPAq-IC~kGkVHIFK 263 (722)
T KOG0532|consen 190 SLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKISYLPVD---FRKMRHLQVLQLENNPLQSPPAQ-ICEKGKVHIFK 263 (722)
T ss_pred HHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCceeecchh---hhhhhhheeeeeccCCCCCChHH-HHhccceeeee
Confidence 9999999999997 7888887666 99999999999655554 89999999999999999854433 22334444445
Q ss_pred EeeCcC
Q 038633 169 ELRLPN 174 (176)
Q Consensus 169 ~L~l~~ 174 (176)
+|+..-
T Consensus 264 yL~~qA 269 (722)
T KOG0532|consen 264 YLSTQA 269 (722)
T ss_pred eecchh
Confidence 555443
No 36
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.94 E-value=5.7e-10 Score=81.78 Aligned_cols=136 Identities=18% Similarity=0.119 Sum_probs=83.9
Q ss_pred CcceEeecCCCCccccchhh----hcCCCCCcEEEccCccccCCcch-------------hhhcCcCCccEEEeecccCC
Q 038633 39 SFDTYEDDAGHELGGPISPS----LLQLKDLKYLDLSMNNFKGFKVP-------------EFIGSLKELRYLNLSGSFFS 101 (176)
Q Consensus 39 ~~l~~L~l~~n~l~~~~~~~----l~~l~~L~~L~l~~~~~~~~~~p-------------~~~~~l~~L~~L~l~~~~~~ 101 (176)
++|++++||+|.+....+.. +..+..|+.|+|.+|.+... .. +.+++-+.|+++....|++.
T Consensus 92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~-ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrle 170 (382)
T KOG1909|consen 92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPE-AGGRLGRALFELAVNKKAASKPKLRVFICGRNRLE 170 (382)
T ss_pred CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChh-HHHHHHHHHHHHHHHhccCCCcceEEEEeeccccc
Confidence 36777777777665443333 34456677777777765532 11 12334566777777777764
Q ss_pred C----CcchhccCCCCCCEEEccCCccCccc--ccccccCCCCCccEEeccCCCCCCchhhhH-HHhhccccCcEeeCcC
Q 038633 102 G----TIPQSLGNLTNLLYLDLNNFLDQSNQ--IGLGWLSGLPSLKYLNLGGADLSKDAAYWL-ESISMLRSLVELRLPN 174 (176)
Q Consensus 102 ~----~~p~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~~~~L~~L~l~~ 174 (176)
. .+...++.++.|+.+.+..|.+.... .....+.++++|++|||.+|.+.......+ ..+..|++|+++++++
T Consensus 171 n~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~d 250 (382)
T KOG1909|consen 171 NGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGD 250 (382)
T ss_pred cccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccc
Confidence 2 23344566677888888887773222 333457788888888888888775544322 2456677788888877
Q ss_pred C
Q 038633 175 C 175 (176)
Q Consensus 175 n 175 (176)
|
T Consensus 251 c 251 (382)
T KOG1909|consen 251 C 251 (382)
T ss_pred c
Confidence 6
No 37
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=6.8e-10 Score=83.61 Aligned_cols=161 Identities=20% Similarity=0.115 Sum_probs=109.3
Q ss_pred cccccccceeeccCccccCCCCc-CcccCCcceEeecCCCCcc-ccchhhhcCCCCCcEEEccCccccCCcchhhhcCcC
Q 038633 11 LHLLSRIFALSLLRCCSVGSALA-QPFRDSFDTYEDDAGHELG-GPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLK 88 (176)
Q Consensus 11 ~~~~~~l~~l~l~~~~~~~~~~~-~~~~~~~l~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~ 88 (176)
+..+++|+.|+++.|.+.....+ .......++.|.+++|.++ .++...+..+++|+.|++.+|....+ ......-+.
T Consensus 168 ~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~-~~~~~~i~~ 246 (505)
T KOG3207|consen 168 AEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILI-KATSTKILQ 246 (505)
T ss_pred HHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccce-ecchhhhhh
Confidence 44678999999999877543322 2346678889999999887 34556667899999999999852221 112222356
Q ss_pred CccEEEeecccCCCCcc--hhccCCCCCCEEEccCCccCccccccc----ccCCCCCccEEeccCCCCCCchhhhHHHhh
Q 038633 89 ELRYLNLSGSFFSGTIP--QSLGNLTNLLYLDLNNFLDQSNQIGLG----WLSGLPSLKYLNLGGADLSKDAAYWLESIS 162 (176)
Q Consensus 89 ~L~~L~l~~~~~~~~~p--~~~~~l~~L~~L~l~~n~~~~~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 162 (176)
.|++|++++|++- ..+ ...+.+++|.-|+++.+.+........ .....++|++|++..|++.++.. +..+.
T Consensus 247 ~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~s--l~~l~ 323 (505)
T KOG3207|consen 247 TLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRS--LNHLR 323 (505)
T ss_pred HHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccc--cchhh
Confidence 7999999999886 333 456788999999999888843222111 12456789999999999876643 23455
Q ss_pred ccccCcEeeCcCC
Q 038633 163 MLRSLVELRLPNC 175 (176)
Q Consensus 163 ~~~~L~~L~l~~n 175 (176)
.+++|+.|.+..|
T Consensus 324 ~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 324 TLENLKHLRITLN 336 (505)
T ss_pred ccchhhhhhcccc
Confidence 5667777665544
No 38
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=1.3e-10 Score=83.82 Aligned_cols=158 Identities=22% Similarity=0.194 Sum_probs=101.0
Q ss_pred ccceeeccCccccCCC-CcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCcc-ccCCcchhhhcCcCCccEE
Q 038633 16 RIFALSLLRCCSVGSA-LAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNN-FKGFKVPEFIGSLKELRYL 93 (176)
Q Consensus 16 ~l~~l~l~~~~~~~~~-~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~p~~~~~l~~L~~L 93 (176)
.+..+|+++..|.... +....++.+|+.|.+.++++.+.+...++.-.+|..|++++|. ++.....--+.++..|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 3677888887775433 3345778899999999999999999999999999999999975 4432122346688999999
Q ss_pred EeecccCCCCcchhcc-CC-CCCCEEEccCCccCcc-cccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEe
Q 038633 94 NLSGSFFSGTIPQSLG-NL-TNLLYLDLNNFLDQSN-QIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVEL 170 (176)
Q Consensus 94 ~l~~~~~~~~~p~~~~-~l-~~L~~L~l~~n~~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L 170 (176)
+++||......-..+. +. ..+..|+++++.-... ....-..+++++|.+|||+++-.... ..+..+.+++.|++|
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~--~~~~~~~kf~~L~~l 343 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN--DCFQEFFKFNYLQHL 343 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc--hHHHHHHhcchheee
Confidence 9999987632221111 11 3566666666543100 11111245666677777766543322 333455556666666
Q ss_pred eCcCC
Q 038633 171 RLPNC 175 (176)
Q Consensus 171 ~l~~n 175 (176)
+++.|
T Consensus 344 SlsRC 348 (419)
T KOG2120|consen 344 SLSRC 348 (419)
T ss_pred ehhhh
Confidence 66554
No 39
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.80 E-value=7.4e-09 Score=86.22 Aligned_cols=152 Identities=30% Similarity=0.286 Sum_probs=105.5
Q ss_pred ccccceeeccCccccCCCCcCcccCCcceEeecCCCC--ccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCcc
Q 038633 14 LSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHE--LGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELR 91 (176)
Q Consensus 14 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~--l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~ 91 (176)
...++.+.+.++.+.... .....+.++.|-+.+|. +.......|..++.|.+||+++|.-.. +.|..++.+.+||
T Consensus 522 ~~~~rr~s~~~~~~~~~~--~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~-~LP~~I~~Li~Lr 598 (889)
T KOG4658|consen 522 WNSVRRMSLMNNKIEHIA--GSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLS-KLPSSIGELVHLR 598 (889)
T ss_pred hhheeEEEEeccchhhcc--CCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccC-cCChHHhhhhhhh
Confidence 455677777766554332 22333368788888885 655566668889999999999876555 4999999999999
Q ss_pred EEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEee
Q 038633 92 YLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELR 171 (176)
Q Consensus 92 ~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ 171 (176)
+|+++++.+. .+|..++.++.|.+|++..+.... ..+.....+.+|++|.+..-... ........+..+.+|+.+.
T Consensus 599 yL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~--~~~~i~~~L~~Lr~L~l~~s~~~-~~~~~l~el~~Le~L~~ls 674 (889)
T KOG4658|consen 599 YLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLE--SIPGILLELQSLRVLRLPRSALS-NDKLLLKELENLEHLENLS 674 (889)
T ss_pred cccccCCCcc-ccchHHHHHHhhheeccccccccc--cccchhhhcccccEEEeeccccc-cchhhHHhhhcccchhhhe
Confidence 9999999997 899999999999999998866411 11334566889999988776532 2222223455555555554
Q ss_pred C
Q 038633 172 L 172 (176)
Q Consensus 172 l 172 (176)
.
T Consensus 675 ~ 675 (889)
T KOG4658|consen 675 I 675 (889)
T ss_pred e
Confidence 4
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.74 E-value=8.5e-09 Score=85.85 Aligned_cols=110 Identities=26% Similarity=0.215 Sum_probs=86.3
Q ss_pred ccccccceeeccCcc--ccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCC
Q 038633 12 HLLSRIFALSLLRCC--SVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKE 89 (176)
Q Consensus 12 ~~~~~l~~l~l~~~~--~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~ 89 (176)
..++.+++|-+..+. +......-+..++.|+.||+++|.--..+|..++.+.+|++|+++++.+. .+|..+..+..
T Consensus 542 ~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~--~LP~~l~~Lk~ 619 (889)
T KOG4658|consen 542 SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS--HLPSGLGNLKK 619 (889)
T ss_pred CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc--ccchHHHHHHh
Confidence 445678888777765 44444444677889999999988666789999999999999999999988 68999999999
Q ss_pred ccEEEeecccCCCCcchhccCCCCCCEEEccCCc
Q 038633 90 LRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFL 123 (176)
Q Consensus 90 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~ 123 (176)
|++|++..+......|.....+++|++|.+..-.
T Consensus 620 L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 620 LIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred hheeccccccccccccchhhhcccccEEEeeccc
Confidence 9999998877654556666678899999886543
No 41
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.71 E-value=3.4e-10 Score=90.21 Aligned_cols=126 Identities=28% Similarity=0.207 Sum_probs=91.6
Q ss_pred cceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCCCCEEEc
Q 038633 40 FDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDL 119 (176)
Q Consensus 40 ~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l 119 (176)
.|...+.++|.+. .+..++.-++.++.|+++.|++... . .+..++.|++||+++|.+. .+|..--.-..|+.|.+
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--D-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNL 239 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--H-HHHhcccccccccccchhc-cccccchhhhhheeeee
Confidence 3445567777774 5667777788899999999998843 3 7778889999999999886 66643111123888999
Q ss_pred cCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCCC
Q 038633 120 NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN 176 (176)
Q Consensus 120 ~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n~ 176 (176)
.+|.+++... +.++++|+.||+++|-+.+... ...+..+..|+.|.|.||.
T Consensus 240 rnN~l~tL~g----ie~LksL~~LDlsyNll~~hse--L~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 240 RNNALTTLRG----IENLKSLYGLDLSYNLLSEHSE--LEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred cccHHHhhhh----HHhhhhhhccchhHhhhhcchh--hhHHHHHHHHHHHhhcCCc
Confidence 9998865544 5788899999999998876532 2355666778888888873
No 42
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.68 E-value=1.6e-08 Score=74.39 Aligned_cols=166 Identities=19% Similarity=0.090 Sum_probs=107.0
Q ss_pred ccccccccceeeccCccccCCCCcC----cccCCcceEeecCCCCccccchhh-------------hcCCCCCcEEEccC
Q 038633 10 DLHLLSRIFALSLLRCCSVGSALAQ----PFRDSFDTYEDDAGHELGGPISPS-------------LLQLKDLKYLDLSM 72 (176)
Q Consensus 10 ~~~~~~~l~~l~l~~~~~~~~~~~~----~~~~~~l~~L~l~~n~l~~~~~~~-------------l~~l~~L~~L~l~~ 72 (176)
.+..++.++.++|++|.+-...+.. ......|++|.|.+|.+....... ...-+.|+++..+.
T Consensus 87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r 166 (382)
T KOG1909|consen 87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR 166 (382)
T ss_pred HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence 4456778899999998885443332 244678888899888876443332 23457788888888
Q ss_pred ccccCC---cchhhhcCcCCccEEEeecccCCC----CcchhccCCCCCCEEEccCCccCcc--cccccccCCCCCccEE
Q 038633 73 NNFKGF---KVPEFIGSLKELRYLNLSGSFFSG----TIPQSLGNLTNLLYLDLNNFLDQSN--QIGLGWLSGLPSLKYL 143 (176)
Q Consensus 73 ~~~~~~---~~p~~~~~l~~L~~L~l~~~~~~~----~~p~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~~~l~~L~~L 143 (176)
|.+... .+...+...+.|+.+.++.|.+.. .+...+..++.|+.||+..|-++.. .....++...++|+.+
T Consensus 167 Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El 246 (382)
T KOG1909|consen 167 NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLREL 246 (382)
T ss_pred cccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheee
Confidence 877643 122446667788888888887742 1234566788888888888877321 1222335566678888
Q ss_pred eccCCCCCCchhh-hHHHh-hccccCcEeeCcCC
Q 038633 144 NLGGADLSKDAAY-WLESI-SMLRSLVELRLPNC 175 (176)
Q Consensus 144 ~l~~n~l~~~~~~-~~~~l-~~~~~L~~L~l~~n 175 (176)
+++++.+...... ++..+ ...|.|+.+.+.+|
T Consensus 247 ~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gN 280 (382)
T KOG1909|consen 247 NLGDCLLENEGAIAFVDALKESAPSLEVLELAGN 280 (382)
T ss_pred cccccccccccHHHHHHHHhccCCCCceeccCcc
Confidence 8888877655432 12223 23577777777776
No 43
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.60 E-value=1.3e-07 Score=64.91 Aligned_cols=106 Identities=24% Similarity=0.206 Sum_probs=80.2
Q ss_pred cceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcc--hhccCCCCCCEE
Q 038633 40 FDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIP--QSLGNLTNLLYL 117 (176)
Q Consensus 40 ~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p--~~~~~l~~L~~L 117 (176)
....+|+.+|.+.. ...|..+++|.+|.+++|.++.+ .|.-...+++|+.|.+.+|.+. .+. ..+..++.|++|
T Consensus 43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I-~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRI-DPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccceecccccchhh--cccCCCccccceEEecCCcceee-ccchhhhccccceEEecCcchh-hhhhcchhccCCcccee
Confidence 45578999998743 34567889999999999999966 5555556788999999999986 332 346688999999
Q ss_pred EccCCccCc-ccccccccCCCCCccEEeccCCC
Q 038633 118 DLNNFLDQS-NQIGLGWLSGLPSLKYLNLGGAD 149 (176)
Q Consensus 118 ~l~~n~~~~-~~~~~~~~~~l~~L~~L~l~~n~ 149 (176)
.+-+|+... ...-...+..+++|++||+.+-.
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt 151 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT 151 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence 999998832 22333457889999999987643
No 44
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.58 E-value=6.7e-08 Score=78.74 Aligned_cols=133 Identities=25% Similarity=0.248 Sum_probs=72.2
Q ss_pred cceEeecCCCC-ccccchhhhc-CCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCCCCEE
Q 038633 40 FDTYEDDAGHE-LGGPISPSLL-QLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYL 117 (176)
Q Consensus 40 ~l~~L~l~~n~-l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L 117 (176)
+|++|+++|.. +....+..++ -+|.|+.|.+.+-.+...++-.-..++++|..||+++++++ .+ ..++.+++|+.|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQVL 200 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHHH
Confidence 56666776652 3333444444 35777777776666553323334446677777777777765 22 455666677766
Q ss_pred EccCCccCcccccccccCCCCCccEEeccCCCCCCch---hhhHHHhhccccCcEeeCcCC
Q 038633 118 DLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDA---AYWLESISMLRSLVELRLPNC 175 (176)
Q Consensus 118 ~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~l~~~~~L~~L~l~~n 175 (176)
.+.+=.+..... ...+..+++|++||+|........ ..+.+.-..+|.|+.||+++.
T Consensus 201 ~mrnLe~e~~~~-l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 201 SMRNLEFESYQD-LIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred hccCCCCCchhh-HHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc
Confidence 666654432221 223556777777777765544332 111111124567777776653
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.52 E-value=3.1e-09 Score=84.90 Aligned_cols=99 Identities=29% Similarity=0.247 Sum_probs=79.7
Q ss_pred CcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEe
Q 038633 65 LKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLN 144 (176)
Q Consensus 65 L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~ 144 (176)
|.+.+.++|.+. ....++..++.+++|+++.|++.... .+..++.|++||++.|.+...+... ...++ |+.|.
T Consensus 166 L~~a~fsyN~L~--~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~--~~gc~-L~~L~ 238 (1096)
T KOG1859|consen 166 LATASFSYNRLV--LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLS--MVGCK-LQLLN 238 (1096)
T ss_pred HhhhhcchhhHH--hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccc--hhhhh-heeee
Confidence 666677888777 57788888999999999999997433 7889999999999999985544432 33555 99999
Q ss_pred ccCCCCCCchhhhHHHhhccccCcEeeCcCC
Q 038633 145 LGGADLSKDAAYWLESISMLRSLVELRLPNC 175 (176)
Q Consensus 145 l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n 175 (176)
+.+|.+.... .+.++.+|+.||+++|
T Consensus 239 lrnN~l~tL~-----gie~LksL~~LDlsyN 264 (1096)
T KOG1859|consen 239 LRNNALTTLR-----GIENLKSLYGLDLSYN 264 (1096)
T ss_pred ecccHHHhhh-----hHHhhhhhhccchhHh
Confidence 9999987443 6788999999999987
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.50 E-value=2.7e-08 Score=77.02 Aligned_cols=125 Identities=30% Similarity=0.229 Sum_probs=62.2
Q ss_pred CcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCCCCEEE
Q 038633 39 SFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLD 118 (176)
Q Consensus 39 ~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 118 (176)
..++.+++..|.+.. .-..+..++++..+++.+|.+.. +...+..+++|++|++++|++.... .+..++.|+.|+
T Consensus 72 ~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~--i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK--IENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELN 146 (414)
T ss_pred HhHHhhccchhhhhh-hhcccccccceeeeeccccchhh--cccchhhhhcchheecccccccccc--chhhccchhhhe
Confidence 334444455555432 22334455666666666666652 2322455566666666666664221 233455566666
Q ss_pred ccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCC
Q 038633 119 LNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNC 175 (176)
Q Consensus 119 l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n 175 (176)
+.+|.+..... +..+.+|+.+++++|.+....+. . +..+..++.+.+++|
T Consensus 147 l~~N~i~~~~~----~~~l~~L~~l~l~~n~i~~ie~~--~-~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 147 LSGNLISDISG----LESLKSLKLLDLSYNRIVDIEND--E-LSELISLEELDLGGN 196 (414)
T ss_pred eccCcchhccC----CccchhhhcccCCcchhhhhhhh--h-hhhccchHHHhccCC
Confidence 66666533222 34455666666666665533321 0 244455555555544
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.44 E-value=1.6e-08 Score=78.28 Aligned_cols=107 Identities=25% Similarity=0.069 Sum_probs=49.0
Q ss_pred cccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCc
Q 038633 11 LHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKEL 90 (176)
Q Consensus 11 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L 90 (176)
+..+.++..+++.++.|.+.... ...+.+|++|++++|.|+...+ +..++.|+.|++++|.+... ..+..+..|
T Consensus 91 l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~---~~~~~l~~L 164 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDI---SGLESLKSL 164 (414)
T ss_pred cccccceeeeeccccchhhcccc-hhhhhcchheeccccccccccc--hhhccchhhheeccCcchhc---cCCccchhh
Confidence 34445555555555555443210 2344455555555555543322 23344455555555555522 222334555
Q ss_pred cEEEeecccCCCCcc-hhccCCCCCCEEEccCCcc
Q 038633 91 RYLNLSGSFFSGTIP-QSLGNLTNLLYLDLNNFLD 124 (176)
Q Consensus 91 ~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~n~~ 124 (176)
+.+++++|++...-+ . ...+..++.+.+.+|.+
T Consensus 165 ~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 165 KLLDLSYNRIVDIENDE-LSELISLEELDLGGNSI 198 (414)
T ss_pred hcccCCcchhhhhhhhh-hhhccchHHHhccCCch
Confidence 555555555542222 1 23444455555555444
No 48
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.41 E-value=2.8e-07 Score=63.30 Aligned_cols=128 Identities=25% Similarity=0.197 Sum_probs=91.6
Q ss_pred ceEeecCCCCccccchhhhc-CCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCCCCEEEc
Q 038633 41 DTYEDDAGHELGGPISPSLL-QLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDL 119 (176)
Q Consensus 41 l~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l 119 (176)
-+++++.+..+..+.- ++ -..+...+|+++|.+.. -..++.++.|++|.+.+|++....|..-..+++|+.|.+
T Consensus 21 e~e~~LR~lkip~ien--lg~~~d~~d~iDLtdNdl~~---l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~L 95 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIEN--LGATLDQFDAIDLTDNDLRK---LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLIL 95 (233)
T ss_pred ccccccccccccchhh--ccccccccceecccccchhh---cccCCCccccceEEecCCcceeeccchhhhccccceEEe
Confidence 4567777776642211 11 24567788999998873 356778999999999999998666654446788999999
Q ss_pred cCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcC
Q 038633 120 NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPN 174 (176)
Q Consensus 120 ~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~ 174 (176)
.+|.++...+. .-+..+++|+.|.+-+|......--=.-.+..+|+|+.||...
T Consensus 96 tnNsi~~l~dl-~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 96 TNNSIQELGDL-DPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCcchhhhhhc-chhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 99999655443 2367899999999999998754321001456788999988753
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.41 E-value=5.6e-07 Score=46.97 Aligned_cols=34 Identities=38% Similarity=0.488 Sum_probs=12.5
Q ss_pred CcEEEccCccccCCcchhhhcCcCCccEEEeecccC
Q 038633 65 LKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFF 100 (176)
Q Consensus 65 L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~ 100 (176)
|++|++++|+++ .+|+.+..+++|++|++++|++
T Consensus 3 L~~L~l~~N~i~--~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 3 LEELDLSNNQIT--DLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp -SEEEETSSS-S--SHGGHGTTCTTSSEEEETSSCC
T ss_pred ceEEEccCCCCc--ccCchHhCCCCCCEEEecCCCC
Confidence 334444444433 2333333444444444444433
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.35 E-value=1.7e-08 Score=65.23 Aligned_cols=105 Identities=20% Similarity=0.182 Sum_probs=68.9
Q ss_pred ccceeeccCccccCCC--CcCcccCCcceEeecCCCCccccchhhhc-CCCCCcEEEccCccccCCcchhhhcCcCCccE
Q 038633 16 RIFALSLLRCCSVGSA--LAQPFRDSFDTYEDDAGHELGGPISPSLL-QLKDLKYLDLSMNNFKGFKVPEFIGSLKELRY 92 (176)
Q Consensus 16 ~l~~l~l~~~~~~~~~--~~~~~~~~~l~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~ 92 (176)
.+..++++.|.+-... .........++..++++|.+. .+|+.|. .++.++.+++.+|.++ .+|..+..|+.|+.
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis--dvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS--DVPEELAAMPALRS 104 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh--hchHHHhhhHHhhh
Confidence 3445667776553221 112344455666778888775 3444444 4567777888888877 56777777788888
Q ss_pred EEeecccCCCCcchhccCCCCCCEEEccCCcc
Q 038633 93 LNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLD 124 (176)
Q Consensus 93 L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~ 124 (176)
++++.|.+. ..|+.+..+.++..|+..+|..
T Consensus 105 lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~ 135 (177)
T KOG4579|consen 105 LNLRFNPLN-AEPRVIAPLIKLDMLDSPENAR 135 (177)
T ss_pred cccccCccc-cchHHHHHHHhHHHhcCCCCcc
Confidence 888888776 6677766777777777777765
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.29 E-value=7e-08 Score=62.42 Aligned_cols=107 Identities=22% Similarity=0.206 Sum_probs=82.3
Q ss_pred ceEeecCCCCccccchhh---hcCCCCCcEEEccCccccCCcchhhhc-CcCCccEEEeecccCCCCcchhccCCCCCCE
Q 038633 41 DTYEDDAGHELGGPISPS---LLQLKDLKYLDLSMNNFKGFKVPEFIG-SLKELRYLNLSGSFFSGTIPQSLGNLTNLLY 116 (176)
Q Consensus 41 l~~L~l~~n~l~~~~~~~---l~~l~~L~~L~l~~~~~~~~~~p~~~~-~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~ 116 (176)
+..++++++.+- -+++. +.....|+..++++|.+. .+|+.+. .++..+.+++++|++. .+|+.+..++.|+.
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk--~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK--KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRS 104 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh--hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhh
Confidence 446888888773 34444 455566777899999999 5676655 5668999999999998 88988999999999
Q ss_pred EEccCCccCcccccccccCCCCCccEEeccCCCCCCch
Q 038633 117 LDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDA 154 (176)
Q Consensus 117 L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 154 (176)
+++..|++...+.. +..+.++..|+..+|.....+
T Consensus 105 lNl~~N~l~~~p~v---i~~L~~l~~Lds~~na~~eid 139 (177)
T KOG4579|consen 105 LNLRFNPLNAEPRV---IAPLIKLDMLDSPENARAEID 139 (177)
T ss_pred cccccCccccchHH---HHHHHhHHHhcCCCCccccCc
Confidence 99999998543332 455788888888888876544
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.24 E-value=2.8e-06 Score=44.33 Aligned_cols=37 Identities=38% Similarity=0.461 Sum_probs=24.7
Q ss_pred CCccEEEeecccCCCCcchhccCCCCCCEEEccCCccC
Q 038633 88 KELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQ 125 (176)
Q Consensus 88 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~ 125 (176)
++|++|++++|+++ .+|+.++.+++|+.|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 35777777777776 56666777777777777777764
No 53
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.23 E-value=7.3e-07 Score=72.82 Aligned_cols=139 Identities=19% Similarity=0.170 Sum_probs=99.4
Q ss_pred cccceeeccCcccc--CCCCcCcccCCcceEeecCCCCc-cccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCcc
Q 038633 15 SRIFALSLLRCCSV--GSALAQPFRDSFDTYEDDAGHEL-GGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELR 91 (176)
Q Consensus 15 ~~l~~l~l~~~~~~--~~~~~~~~~~~~l~~L~l~~n~l-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~ 91 (176)
.+|+.|++++.... +........++.|+.|.+.+-.+ .+++.....++++|..||+++++++.. ..++.+++||
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl---~GIS~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL---SGISRLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc---HHHhccccHH
Confidence 46778888775442 11123456778899999999765 345566677899999999999999943 6788899999
Q ss_pred EEEeecccCCC-CcchhccCCCCCCEEEccCCccCcccccc----cccCCCCCccEEeccCCCCCCchhh
Q 038633 92 YLNLSGSFFSG-TIPQSLGNLTNLLYLDLNNFLDQSNQIGL----GWLSGLPSLKYLNLGGADLSKDAAY 156 (176)
Q Consensus 92 ~L~l~~~~~~~-~~p~~~~~l~~L~~L~l~~n~~~~~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~ 156 (176)
.|.+.+=.+.. ..-..+..+++|+.||++..+........ .--..++.|+.||.+++.+.+...+
T Consensus 199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le 268 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILE 268 (699)
T ss_pred HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHH
Confidence 99888866652 12235668999999999987652222100 1134689999999999988765443
No 54
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.17 E-value=5.4e-06 Score=59.76 Aligned_cols=88 Identities=19% Similarity=0.122 Sum_probs=55.9
Q ss_pred cccccceeeccCccccCCCCc----CcccCCcceEeecCCCCc---cccch-------hhhcCCCCCcEEEccCccccCC
Q 038633 13 LLSRIFALSLLRCCSVGSALA----QPFRDSFDTYEDDAGHEL---GGPIS-------PSLLQLKDLKYLDLSMNNFKGF 78 (176)
Q Consensus 13 ~~~~l~~l~l~~~~~~~~~~~----~~~~~~~l~~L~l~~n~l---~~~~~-------~~l~~l~~L~~L~l~~~~~~~~ 78 (176)
.+..++.+++++|.|...... ......+|+..+++.-.. .++++ +++..++.++..++++|.|...
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 356788888888877543221 223345566666655432 22222 4456778888888888887765
Q ss_pred cchhh----hcCcCCccEEEeecccCC
Q 038633 79 KVPEF----IGSLKELRYLNLSGSFFS 101 (176)
Q Consensus 79 ~~p~~----~~~l~~L~~L~l~~~~~~ 101 (176)
.|+. +++...|++|.+++|.+.
T Consensus 108 -~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 108 -FPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred -cchHHHHHHhcCCCceeEEeecCCCC
Confidence 5543 456677888888888764
No 55
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.16 E-value=1.8e-06 Score=62.84 Aligned_cols=62 Identities=21% Similarity=0.246 Sum_probs=41.9
Q ss_pred CCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCC
Q 038633 111 LTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNC 175 (176)
Q Consensus 111 l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n 175 (176)
++++..+-++.|+++.... ...+...+.+--|+|+.|++-.+.. +..+.+++.|+.|.+.++
T Consensus 198 Fpnv~sv~v~e~PlK~~s~-ek~se~~p~~~~LnL~~~~idswas--vD~Ln~f~~l~dlRv~~~ 259 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESS-EKGSEPFPSLSCLNLGANNIDSWAS--VDALNGFPQLVDLRVSEN 259 (418)
T ss_pred cccchheeeecCcccchhh-cccCCCCCcchhhhhcccccccHHH--HHHHcCCchhheeeccCC
Confidence 4677777788887743222 2235566677778888888876654 357778888888877765
No 56
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.16 E-value=2.1e-06 Score=61.80 Aligned_cols=139 Identities=17% Similarity=0.164 Sum_probs=71.6
Q ss_pred ccCCcceEeecCCCCccccchhh----hcCCCCCcEEEccCccccCC---cch---------hhhcCcCCccEEEeeccc
Q 038633 36 FRDSFDTYEDDAGHELGGPISPS----LLQLKDLKYLDLSMNNFKGF---KVP---------EFIGSLKELRYLNLSGSF 99 (176)
Q Consensus 36 ~~~~~l~~L~l~~n~l~~~~~~~----l~~l~~L~~L~l~~~~~~~~---~~p---------~~~~~l~~L~~L~l~~~~ 99 (176)
..++.++..+++.|.+....|.. +..-+.|..|.+++|..... .+. +....-|.|++.....|+
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR 168 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR 168 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence 44556666666666665444433 33445566666666654432 011 112234566777766666
Q ss_pred CCCCcc-----hhccCCCCCCEEEccCCccCccc---ccccccCCCCCccEEeccCCCCCCchhhhH-HHhhccccCcEe
Q 038633 100 FSGTIP-----QSLGNLTNLLYLDLNNFLDQSNQ---IGLGWLSGLPSLKYLNLGGADLSKDAAYWL-ESISMLRSLVEL 170 (176)
Q Consensus 100 ~~~~~p-----~~~~~l~~L~~L~l~~n~~~~~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~~~~L~~L 170 (176)
+. ..| ..+..+..|+.+.+..|.+.... .....+..+.+|++||+..|.++-...... ..+..|+.|++|
T Consensus 169 le-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 169 LE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred hc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence 64 222 12334456666777776662211 011113455667777777776654433322 234456666666
Q ss_pred eCcCC
Q 038633 171 RLPNC 175 (176)
Q Consensus 171 ~l~~n 175 (176)
.+.+|
T Consensus 248 ~lnDC 252 (388)
T COG5238 248 RLNDC 252 (388)
T ss_pred cccch
Confidence 66554
No 57
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=3.1e-07 Score=66.79 Aligned_cols=134 Identities=19% Similarity=0.056 Sum_probs=89.3
Q ss_pred cceEeecCCCCccc-cchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCc--chhccCCCCCCE
Q 038633 40 FDTYEDDAGHELGG-PISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTI--PQSLGNLTNLLY 116 (176)
Q Consensus 40 ~l~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~--p~~~~~l~~L~~ 116 (176)
.+++||++...++. .....+..+.+|+-|.+.++.+.+. +...+..-..|+.|+++++.-..+- --.+..++.|+.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~-I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDP-IVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcH-HHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 47888998888763 2445566788888889988888875 7777777788999999887532221 123557888999
Q ss_pred EEccCCccCcccccccccCCC-CCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCC
Q 038633 117 LDLNNFLDQSNQIGLGWLSGL-PSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNC 175 (176)
Q Consensus 117 L~l~~n~~~~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n 175 (176)
|++++|...... ...++.+. .+|..|+++|..-.-.......-..++|+|.+|||++|
T Consensus 265 LNlsWc~l~~~~-Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~ 323 (419)
T KOG2120|consen 265 LNLSWCFLFTEK-VTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDS 323 (419)
T ss_pred cCchHhhccchh-hhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccc
Confidence 999988773221 22223333 36778888876422122221123457899999999987
No 58
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.93 E-value=7.7e-06 Score=58.26 Aligned_cols=129 Identities=26% Similarity=0.149 Sum_probs=72.7
Q ss_pred ccceeeccCccccC-CCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCc--cccCCcchhhhcCcCCccE
Q 038633 16 RIFALSLLRCCSVG-SALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMN--NFKGFKVPEFIGSLKELRY 92 (176)
Q Consensus 16 ~l~~l~l~~~~~~~-~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~--~~~~~~~p~~~~~l~~L~~ 92 (176)
.++.+.+.+|.-.. .+...+.....++.|++.+..++.. ..+..+++|++|.++.| .+... ++.-...+++|++
T Consensus 19 ~v~~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~-l~vl~e~~P~l~~ 95 (260)
T KOG2739|consen 19 QVDELFLDNARSGAGKLGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGG-LEVLAEKAPNLKV 95 (260)
T ss_pred hhhhhhcchhhhcCCCcccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCccccccc-ceehhhhCCceeE
Confidence 34455555433322 2333445555667777766666432 22445778888888888 55544 4444445588888
Q ss_pred EEeecccCCC-CcchhccCCCCCCEEEccCCccCc-ccccccccCCCCCccEEeccC
Q 038633 93 LNLSGSFFSG-TIPQSLGNLTNLLYLDLNNFLDQS-NQIGLGWLSGLPSLKYLNLGG 147 (176)
Q Consensus 93 L~l~~~~~~~-~~p~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~l~~L~~L~l~~ 147 (176)
+++++|++.. ..-..+..+.+|..|++..|.... ...-...|.-+++|++||-..
T Consensus 96 l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 96 LNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred EeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 8888888752 111234455667777777776522 112223456677777765433
No 59
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.89 E-value=4e-06 Score=59.70 Aligned_cols=113 Identities=22% Similarity=0.171 Sum_probs=64.7
Q ss_pred chhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecc--cCCCCcchhccCCCCCCEEEccCCccCccccccc
Q 038633 55 ISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGS--FFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLG 132 (176)
Q Consensus 55 ~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~--~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~ 132 (176)
+....-.+..|+.+.+.+...+. -..+..+++|+.|.++.| ++...++.....+++|+++++++|+++. .....
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt---~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~-lstl~ 110 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTT---LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD-LSTLR 110 (260)
T ss_pred cccccccccchhhhhhhccceee---cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc-ccccc
Confidence 34444456667777777766662 244566778888888888 5544444444455888888888888753 22222
Q ss_pred ccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEee
Q 038633 133 WLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELR 171 (176)
Q Consensus 133 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ 171 (176)
.+..+.+|.+|++..|......-.--..+..++.|+.|+
T Consensus 111 pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD 149 (260)
T KOG2739|consen 111 PLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD 149 (260)
T ss_pred hhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence 245566677777777654432110001333445555554
No 60
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.88 E-value=1.2e-06 Score=63.72 Aligned_cols=107 Identities=24% Similarity=0.138 Sum_probs=72.9
Q ss_pred ccceeeccCccccCCCC--cCcccCCcceEeecCCCCccc--cchhhhcCCCCCcEEEccCccccCCcchhhh-cCcCCc
Q 038633 16 RIFALSLLRCCSVGSAL--AQPFRDSFDTYEDDAGHELGG--PISPSLLQLKDLKYLDLSMNNFKGFKVPEFI-GSLKEL 90 (176)
Q Consensus 16 ~l~~l~l~~~~~~~~~~--~~~~~~~~l~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~-~~l~~L 90 (176)
.+..+.+.+|.|..... ......+.++++|+.+|.|++ ++...+.+++.|++|+++.|.+... + +.+ -...+|
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~-I-~~lp~p~~nl 123 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD-I-KSLPLPLKNL 123 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc-c-ccCcccccce
Confidence 44456667776643322 223455678899999999874 3445566899999999999988743 2 233 256789
Q ss_pred cEEEeecccCCCCcc-hhccCCCCCCEEEccCCcc
Q 038633 91 RYLNLSGSFFSGTIP-QSLGNLTNLLYLDLNNFLD 124 (176)
Q Consensus 91 ~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~n~~ 124 (176)
+++.+.+..+..... ..+..+|.++.+.++.|..
T Consensus 124 ~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 124 RVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL 158 (418)
T ss_pred EEEEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence 999999988753322 3455777788887777754
No 61
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.75 E-value=9.4e-07 Score=63.75 Aligned_cols=101 Identities=23% Similarity=0.200 Sum_probs=71.4
Q ss_pred ccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEE
Q 038633 14 LSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYL 93 (176)
Q Consensus 14 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L 93 (176)
+.+++.|+..+|.+..+... ..+..|+.|.|+-|.|+.. ..+..+++|++|+|..|.|.....-..+..+++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DIsic--~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISIC--EKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHHHHH--HhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 45677888888887665433 5566688888888888654 3356788888888888888754333557788888888
Q ss_pred EeecccCCCCcch-----hccCCCCCCEEE
Q 038633 94 NLSGSFFSGTIPQ-----SLGNLTNLLYLD 118 (176)
Q Consensus 94 ~l~~~~~~~~~p~-----~~~~l~~L~~L~ 118 (176)
.+..|...+..+. .+..+++|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 8888877655543 244677777776
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.74 E-value=0.0001 Score=56.61 Aligned_cols=78 Identities=15% Similarity=0.060 Sum_probs=49.8
Q ss_pred ccccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCc-cccCCcchhhhcC
Q 038633 8 LSDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMN-NFKGFKVPEFIGS 86 (176)
Q Consensus 8 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~p~~~~~ 86 (176)
.+.+..+++++.|++++|.+... | .-..+|+.|.++++.--..+|..+ ..+|+.|++++| .+. .+|.
T Consensus 45 ~~r~~~~~~l~~L~Is~c~L~sL-P---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~--sLP~---- 112 (426)
T PRK15386 45 TPQIEEARASGRLYIKDCDIESL-P---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS--GLPE---- 112 (426)
T ss_pred HHHHHHhcCCCEEEeCCCCCccc-C---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc--cccc----
Confidence 34455678899999999865443 2 233468889998753324556544 357889999888 443 2443
Q ss_pred cCCccEEEeeccc
Q 038633 87 LKELRYLNLSGSF 99 (176)
Q Consensus 87 l~~L~~L~l~~~~ 99 (176)
+|+.|++..+.
T Consensus 113 --sLe~L~L~~n~ 123 (426)
T PRK15386 113 --SVRSLEIKGSA 123 (426)
T ss_pred --ccceEEeCCCC
Confidence 45666666544
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.66 E-value=0.00025 Score=54.53 Aligned_cols=62 Identities=15% Similarity=0.093 Sum_probs=44.0
Q ss_pred CCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecc-cCCCCcchh
Q 038633 38 DSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGS-FFSGTIPQS 107 (176)
Q Consensus 38 ~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~-~~~~~~p~~ 107 (176)
..+++.|++++|.++ .+|. -..+|++|.+++|.-... .|..++ .+|+.|.+++| .+. .+|..
T Consensus 51 ~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLts-LP~~LP--~nLe~L~Ls~Cs~L~-sLP~s 113 (426)
T PRK15386 51 ARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTT-LPGSIP--EGLEKLTVCHCPEIS-GLPES 113 (426)
T ss_pred hcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCccc-CCchhh--hhhhheEccCccccc-ccccc
Confidence 467889999999875 4552 245699999998654443 676553 68999999998 443 55643
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.55 E-value=0.00058 Score=43.90 Aligned_cols=106 Identities=16% Similarity=0.123 Sum_probs=49.4
Q ss_pred CcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCC
Q 038633 34 QPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTN 113 (176)
Q Consensus 34 ~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~ 113 (176)
.+.....++.+.+.. .+.......|.+++.++.+.+.++ +... ....+..+.+++.+.+.+ .+.......+..++.
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i-~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSI-GDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE--TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cccc-ceeeeecccccccccccc-ccccccccccccccc
Confidence 344555666666654 454555566777777777777664 4422 333455666777777755 332122234555777
Q ss_pred CCEEEccCCccCcccccccccCCCCCccEEeccC
Q 038633 114 LLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGG 147 (176)
Q Consensus 114 L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~ 147 (176)
++.+++..+ + .......+.++ .++.+.+..
T Consensus 83 l~~i~~~~~-~--~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 83 LKNIDIPSN-I--TEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp ECEEEETTT----BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccCcc-c--cEEchhhhcCC-CceEEEECC
Confidence 777777554 3 22223346666 777777665
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.45 E-value=0.00055 Score=44.03 Aligned_cols=124 Identities=11% Similarity=0.047 Sum_probs=65.8
Q ss_pred cccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcC
Q 038633 9 SDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLK 88 (176)
Q Consensus 9 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~ 88 (176)
..+..+..++.+.+.+ .+.......+..+..++.+.+..+ +.......|..+..++.+.+.+ .+... ....+..+.
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i-~~~~F~~~~ 81 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSI-GDNAFSNCT 81 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE--TTTTTT-T
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccc-ccccccccc
Confidence 4566788889998885 455555566778878999999875 6666667788898999999976 44422 334566789
Q ss_pred CccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCcc
Q 038633 89 ELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLK 141 (176)
Q Consensus 89 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~ 141 (176)
+++.+++..+ +.......+... .++.+.+..+ + .......|.++++|+
T Consensus 82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~~-~--~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPSN-I--TKIEENAFKNCTKLK 129 (129)
T ss_dssp TECEEEETTT--BEEHTTTTTT--T--EEE-TTB----SS----GGG------
T ss_pred cccccccCcc-ccEEchhhhcCC-CceEEEECCC-c--cEECCccccccccCC
Confidence 9999999765 442333456665 8999988763 2 122334467776653
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.37 E-value=9e-06 Score=58.82 Aligned_cols=101 Identities=22% Similarity=0.132 Sum_probs=60.3
Q ss_pred CCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchh--ccCCCCCC
Q 038633 38 DSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQS--LGNLTNLL 115 (176)
Q Consensus 38 ~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~--~~~l~~L~ 115 (176)
+.+++.|+.+++.++++ .....|+.|++|.|+-|+|+.. +.+..+++|++|+|..|.|. .+.+. +.++++|+
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL---~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL---APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLR 91 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc---hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhh
Confidence 34556677777777542 2234677777777777777732 44556677777777777775 33332 44677777
Q ss_pred EEEccCCccCcc-c--ccccccCCCCCccEEe
Q 038633 116 YLDLNNFLDQSN-Q--IGLGWLSGLPSLKYLN 144 (176)
Q Consensus 116 ~L~l~~n~~~~~-~--~~~~~~~~l~~L~~L~ 144 (176)
.|=+..|+.-.. + .-...++.+++|+.||
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 777777665110 0 1112355666666664
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.39 E-value=0.0017 Score=28.31 Aligned_cols=10 Identities=70% Similarity=0.962 Sum_probs=3.7
Q ss_pred EEEccCcccc
Q 038633 67 YLDLSMNNFK 76 (176)
Q Consensus 67 ~L~l~~~~~~ 76 (176)
+||+++|.++
T Consensus 4 ~Ldls~n~l~ 13 (22)
T PF00560_consen 4 YLDLSGNNLT 13 (22)
T ss_dssp EEEETSSEES
T ss_pred EEECCCCcCE
Confidence 3333333333
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.39 E-value=0.0017 Score=28.28 Aligned_cols=21 Identities=29% Similarity=0.306 Sum_probs=14.8
Q ss_pred cceEeecCCCCccccchhhhcC
Q 038633 40 FDTYEDDAGHELGGPISPSLLQ 61 (176)
Q Consensus 40 ~l~~L~l~~n~l~~~~~~~l~~ 61 (176)
+|++|++++|.++ .+|..|.+
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT
T ss_pred CccEEECCCCcCE-eCChhhcC
Confidence 4678888888887 66666544
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.34 E-value=0.0031 Score=49.55 Aligned_cols=113 Identities=21% Similarity=0.169 Sum_probs=50.4
Q ss_pred CCcceEeecCCC-Ccccc-chhhhcCCCCCcEEEccCc-cccCC---cchhhhcCcCCccEEEeeccc-CCCCcchhcc-
Q 038633 38 DSFDTYEDDAGH-ELGGP-ISPSLLQLKDLKYLDLSMN-NFKGF---KVPEFIGSLKELRYLNLSGSF-FSGTIPQSLG- 109 (176)
Q Consensus 38 ~~~l~~L~l~~n-~l~~~-~~~~l~~l~~L~~L~l~~~-~~~~~---~~p~~~~~l~~L~~L~l~~~~-~~~~~p~~~~- 109 (176)
...++.+.+.++ .++.. .......++.|+.|+++++ ..... ........+.+|+.|+++++. +++..-..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 345555555554 22221 2233345566666666652 11111 011222334556666666665 3333223332
Q ss_pred CCCCCCEEEccCCc-cCcccccccccCCCCCccEEeccCCCCC
Q 038633 110 NLTNLLYLDLNNFL-DQSNQIGLGWLSGLPSLKYLNLGGADLS 151 (176)
Q Consensus 110 ~l~~L~~L~l~~n~-~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 151 (176)
.+++|+.|.+..+. ++ ..........+++|++|+++++...
T Consensus 267 ~c~~L~~L~l~~c~~lt-~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLT-DEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hCCCcceEccCCCCccc-hhHHHHHHHhcCcccEEeeecCccc
Confidence 25566666655444 21 1111222345556666666665543
No 70
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.33 E-value=0.0014 Score=45.47 Aligned_cols=86 Identities=22% Similarity=0.115 Sum_probs=44.9
Q ss_pred ccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhc-CcCCccEEEeecc-cCCCCcchhccCCCC
Q 038633 36 FRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIG-SLKELRYLNLSGS-FFSGTIPQSLGNLTN 113 (176)
Q Consensus 36 ~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~-~l~~L~~L~l~~~-~~~~~~p~~~~~l~~ 113 (176)
.....++.+|-++..|..+.-.-+.+++.++.|.+.+|.-.....-+.+. ..++|+.|++++| +|++.--..+..+++
T Consensus 98 ~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lkn 177 (221)
T KOG3864|consen 98 ADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKN 177 (221)
T ss_pred CCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhh
Confidence 33445566666666666666666666666666666666543221222222 2356666666655 333222333444555
Q ss_pred CCEEEccC
Q 038633 114 LLYLDLNN 121 (176)
Q Consensus 114 L~~L~l~~ 121 (176)
|+.|.+.+
T Consensus 178 Lr~L~l~~ 185 (221)
T KOG3864|consen 178 LRRLHLYD 185 (221)
T ss_pred hHHHHhcC
Confidence 55554443
No 71
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.25 E-value=0.0032 Score=48.24 Aligned_cols=157 Identities=18% Similarity=0.125 Sum_probs=73.1
Q ss_pred cccceeeccCccccCCCC--cCcccCCcceEeecCCC-Cccccchhhhc-CCCCCcEEEccCcc-ccCCcchhhh-cCcC
Q 038633 15 SRIFALSLLRCCSVGSAL--AQPFRDSFDTYEDDAGH-ELGGPISPSLL-QLKDLKYLDLSMNN-FKGFKVPEFI-GSLK 88 (176)
Q Consensus 15 ~~l~~l~l~~~~~~~~~~--~~~~~~~~l~~L~l~~n-~l~~~~~~~l~-~l~~L~~L~l~~~~-~~~~~~p~~~-~~l~ 88 (176)
.-+..+++..|....... ........+++++.+++ .+++..-..+. +..+|++|.+..|+ |+.. .-..+ .+.+
T Consensus 268 ~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~-~ft~l~rn~~ 346 (483)
T KOG4341|consen 268 LEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDR-GFTMLGRNCP 346 (483)
T ss_pred hHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhh-hhhhhhcCCh
Confidence 345555555554432211 12344556667777665 34443333433 56777777777765 3332 11222 2455
Q ss_pred CccEEEeecccCCCC--cchhccCCCCCCEEEccCCccCccc---ccccccCCCCCccEEeccCCCCCCchhhhHHHhhc
Q 038633 89 ELRYLNLSGSFFSGT--IPQSLGNLTNLLYLDLNNFLDQSNQ---IGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISM 163 (176)
Q Consensus 89 ~L~~L~l~~~~~~~~--~p~~~~~l~~L~~L~l~~n~~~~~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 163 (176)
+|+.+++..+..... +...-.+.+.|+.+.+++|...+.. .....-..+..|+.+-++++..... ....-+..
T Consensus 347 ~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d--~~Le~l~~ 424 (483)
T KOG4341|consen 347 HLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITD--ATLEHLSI 424 (483)
T ss_pred hhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchH--HHHHHHhh
Confidence 666666666554211 1122224566666666665542111 0011112344555555555554322 11223444
Q ss_pred cccCcEeeCcC
Q 038633 164 LRSLVELRLPN 174 (176)
Q Consensus 164 ~~~L~~L~l~~ 174 (176)
.++|+.+++-+
T Consensus 425 c~~Leri~l~~ 435 (483)
T KOG4341|consen 425 CRNLERIELID 435 (483)
T ss_pred Ccccceeeeec
Confidence 55665555544
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.85 E-value=0.0021 Score=50.50 Aligned_cols=110 Identities=21% Similarity=0.062 Sum_probs=65.0
Q ss_pred ccccceeeccCccccCC--CCcCcccCCcceEeecCCC-Cccccc----hhhhcCCCCCcEEEccCcc-ccCCcchhhhc
Q 038633 14 LSRIFALSLLRCCSVGS--ALAQPFRDSFDTYEDDAGH-ELGGPI----SPSLLQLKDLKYLDLSMNN-FKGFKVPEFIG 85 (176)
Q Consensus 14 ~~~l~~l~l~~~~~~~~--~~~~~~~~~~l~~L~l~~n-~l~~~~----~~~l~~l~~L~~L~l~~~~-~~~~~~p~~~~ 85 (176)
++.++.+.+.+|..... ..........|+.|+++++ ...... ......+++|+.|+++.+. ++.. .-..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~-~l~~l~ 265 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDI-GLSALA 265 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCch-hHHHHH
Confidence 56777777777655443 2234566677788888762 111111 1233456778888888877 5654 333333
Q ss_pred -CcCCccEEEeeccc-CCCCcch-hccCCCCCCEEEccCCcc
Q 038633 86 -SLKELRYLNLSGSF-FSGTIPQ-SLGNLTNLLYLDLNNFLD 124 (176)
Q Consensus 86 -~l~~L~~L~l~~~~-~~~~~p~-~~~~l~~L~~L~l~~n~~ 124 (176)
.+++|+.|.+.+|. +++..-. ....++.|++|++.++..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 36788888877666 3432222 233567788888887765
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.74 E-value=0.0021 Score=44.59 Aligned_cols=86 Identities=22% Similarity=0.214 Sum_probs=48.6
Q ss_pred CCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCC-cchhcc-CCCCCCEEEccCCccCcccccccccCCCCCcc
Q 038633 64 DLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGT-IPQSLG-NLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLK 141 (176)
Q Consensus 64 ~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~-~p~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~ 141 (176)
.++.+|-+++.+... .-+.+..+++++.|.+.+|.--+. .-+.++ ..++|+.|++++|+-.+ ......+..+++|+
T Consensus 102 ~IeaVDAsds~I~~e-Gle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT-~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYE-GLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT-DGGLACLLKLKNLR 179 (221)
T ss_pred eEEEEecCCchHHHH-HHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec-hhHHHHHHHhhhhH
Confidence 466677777776654 556666777777777777653221 112222 34677777777765421 11122355666676
Q ss_pred EEeccCCCCC
Q 038633 142 YLNLGGADLS 151 (176)
Q Consensus 142 ~L~l~~n~l~ 151 (176)
.|.+.+-..+
T Consensus 180 ~L~l~~l~~v 189 (221)
T KOG3864|consen 180 RLHLYDLPYV 189 (221)
T ss_pred HHHhcCchhh
Confidence 6666554433
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.33 E-value=0.014 Score=23.63 Aligned_cols=11 Identities=45% Similarity=0.585 Sum_probs=3.5
Q ss_pred ccEEEeecccC
Q 038633 90 LRYLNLSGSFF 100 (176)
Q Consensus 90 L~~L~l~~~~~ 100 (176)
|+.|++++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 34444444443
No 75
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=94.77 E-value=0.017 Score=44.53 Aligned_cols=156 Identities=17% Similarity=0.062 Sum_probs=96.0
Q ss_pred cccccceeeccCccccCCCC--cCcccCCcceEeecCCCC-ccccchhhhc-CCCCCcEEEccCccccCC-cchhhhcCc
Q 038633 13 LLSRIFALSLLRCCSVGSAL--AQPFRDSFDTYEDDAGHE-LGGPISPSLL-QLKDLKYLDLSMNNFKGF-KVPEFIGSL 87 (176)
Q Consensus 13 ~~~~l~~l~l~~~~~~~~~~--~~~~~~~~l~~L~l~~n~-l~~~~~~~l~-~l~~L~~L~l~~~~~~~~-~~p~~~~~l 87 (176)
.++.+..++.++|....... .--.+..+|+.|.+++++ ++...-..+. +...|+.+++..+...-. ++...-..+
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 36677888888776533221 123566889999999884 5544334444 578899999988764421 122223367
Q ss_pred CCccEEEeecccCCCCc-----chhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhh
Q 038633 88 KELRYLNLSGSFFSGTI-----PQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESIS 162 (176)
Q Consensus 88 ~~L~~L~l~~~~~~~~~-----p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 162 (176)
+.||.+.++.|...... ...-..+..+..+.+.+++.... .....+..+++|+.+++.+++-....+. ...-.
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d-~~Le~l~~c~~Leri~l~~~q~vtk~~i-~~~~~ 449 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITD-ATLEHLSICRNLERIELIDCQDVTKEAI-SRFAT 449 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchH-HHHHHHhhCcccceeeeechhhhhhhhh-HHHHh
Confidence 88999999988653211 11223567788889998887422 2223367888999999888875433221 12335
Q ss_pred ccccCcEe
Q 038633 163 MLRSLVEL 170 (176)
Q Consensus 163 ~~~~L~~L 170 (176)
++|+++..
T Consensus 450 ~lp~i~v~ 457 (483)
T KOG4341|consen 450 HLPNIKVH 457 (483)
T ss_pred hCccceeh
Confidence 66666543
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.98 E-value=0.0011 Score=47.07 Aligned_cols=83 Identities=19% Similarity=0.024 Sum_probs=59.8
Q ss_pred CCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCCCCEE
Q 038633 38 DSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYL 117 (176)
Q Consensus 38 ~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L 117 (176)
....+.||++.|++- ....-|.-++.+..|+++.|.+. ..|++++....++.+++..|..+ ..|..++..+.++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~--~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK--FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN 116 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh--hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence 345667788877663 23344555667777788888777 57778877777788877777776 778778888888888
Q ss_pred EccCCcc
Q 038633 118 DLNNFLD 124 (176)
Q Consensus 118 ~l~~n~~ 124 (176)
+...+++
T Consensus 117 e~k~~~~ 123 (326)
T KOG0473|consen 117 EQKKTEF 123 (326)
T ss_pred hhccCcc
Confidence 8877776
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.96 E-value=0.056 Score=24.27 Aligned_cols=20 Identities=35% Similarity=0.451 Sum_probs=14.7
Q ss_pred CCCccEEeccCCCCCCchhh
Q 038633 137 LPSLKYLNLGGADLSKDAAY 156 (176)
Q Consensus 137 l~~L~~L~l~~n~l~~~~~~ 156 (176)
+++|++|+|++|.+...++.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35788888888888766553
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.96 E-value=0.056 Score=24.27 Aligned_cols=20 Identities=35% Similarity=0.451 Sum_probs=14.7
Q ss_pred CCCccEEeccCCCCCCchhh
Q 038633 137 LPSLKYLNLGGADLSKDAAY 156 (176)
Q Consensus 137 l~~L~~L~l~~n~l~~~~~~ 156 (176)
+++|++|+|++|.+...++.
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35788888888888766553
No 79
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=93.50 E-value=0.024 Score=25.02 Aligned_cols=13 Identities=46% Similarity=0.611 Sum_probs=4.9
Q ss_pred CCcEEEccCcccc
Q 038633 64 DLKYLDLSMNNFK 76 (176)
Q Consensus 64 ~L~~L~l~~~~~~ 76 (176)
+|++|++++|.+.
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 3444444444443
No 80
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.95 E-value=0.0022 Score=50.78 Aligned_cols=38 Identities=26% Similarity=0.327 Sum_probs=17.0
Q ss_pred CCccEEeccCCCCCCchhhh-HHHhhccccCcEeeCcCC
Q 038633 138 PSLKYLNLGGADLSKDAAYW-LESISMLRSLVELRLPNC 175 (176)
Q Consensus 138 ~~L~~L~l~~n~l~~~~~~~-~~~l~~~~~L~~L~l~~n 175 (176)
..++++++..|.+.+..... ...+...+.++++.+..|
T Consensus 262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n 300 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNN 300 (478)
T ss_pred hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccC
Confidence 34455555555555433221 122333445555555444
No 81
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=91.76 E-value=0.0024 Score=50.57 Aligned_cols=159 Identities=21% Similarity=0.111 Sum_probs=83.2
Q ss_pred cceeeccCccccCCCC----cCcccCCcceEeecCCCCccccchhhhc----CC-CCCcEEEccCccccCC---cchhhh
Q 038633 17 IFALSLLRCCSVGSAL----AQPFRDSFDTYEDDAGHELGGPISPSLL----QL-KDLKYLDLSMNNFKGF---KVPEFI 84 (176)
Q Consensus 17 l~~l~l~~~~~~~~~~----~~~~~~~~l~~L~l~~n~l~~~~~~~l~----~l-~~L~~L~l~~~~~~~~---~~p~~~ 84 (176)
+..+.+.+|.+..... .......+++.|++++|.+.++....+. .. ..+++|++..|.+... .+.+.+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 5556666666643321 1335555666777777777644333322 22 3455666666655532 133445
Q ss_pred cCcCCccEEEeecccCCC----Ccchhcc----CCCCCCEEEccCCccCccc--ccccccCCCCC-ccEEeccCCCCCCc
Q 038633 85 GSLKELRYLNLSGSFFSG----TIPQSLG----NLTNLLYLDLNNFLDQSNQ--IGLGWLSGLPS-LKYLNLGGADLSKD 153 (176)
Q Consensus 85 ~~l~~L~~L~l~~~~~~~----~~p~~~~----~l~~L~~L~l~~n~~~~~~--~~~~~~~~l~~-L~~L~l~~n~l~~~ 153 (176)
.....++.++++.|.+.. ..+..+. ...++++|.+.+|.+.... ....++...++ +..+++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 456677777777776631 1222222 3566777777777663111 11122444444 55677778777654
Q ss_pred hhhh-HHHhhcc-ccCcEeeCcCC
Q 038633 154 AAYW-LESISML-RSLVELRLPNC 175 (176)
Q Consensus 154 ~~~~-~~~l~~~-~~L~~L~l~~n 175 (176)
..+. ...+..+ ..+++++++.|
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~n 272 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRN 272 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcC
Confidence 2221 1223334 45677777665
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.50 E-value=0.0037 Score=44.56 Aligned_cols=89 Identities=16% Similarity=0.119 Sum_probs=71.3
Q ss_pred hhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCC
Q 038633 57 PSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSG 136 (176)
Q Consensus 57 ~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 136 (176)
..+....+.+.||++.|... ..-..++-++.+..|+++.|++. ..|+.++....+.+++...|..+..+. .+..
T Consensus 36 ~ei~~~kr~tvld~~s~r~v--n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~p~---s~~k 109 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLV--NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQPK---SQKK 109 (326)
T ss_pred hhhhccceeeeehhhhhHHH--hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhCCc---cccc
Confidence 34566788899999999877 45566777889999999999997 889888888889999998887754444 3778
Q ss_pred CCCccEEeccCCCCC
Q 038633 137 LPSLKYLNLGGADLS 151 (176)
Q Consensus 137 l~~L~~L~l~~n~l~ 151 (176)
.+.++.+++-+|.+.
T Consensus 110 ~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 110 EPHPKKNEQKKTEFF 124 (326)
T ss_pred cCCcchhhhccCcch
Confidence 889999999888754
No 83
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=87.71 E-value=0.54 Score=37.78 Aligned_cols=66 Identities=24% Similarity=0.139 Sum_probs=37.8
Q ss_pred CcCCccEEEeecccCCCC--cchhccCCCCCCEEEccCC--ccCcccccccccCCCCCccEEeccCCCCCCc
Q 038633 86 SLKELRYLNLSGSFFSGT--IPQSLGNLTNLLYLDLNNF--LDQSNQIGLGWLSGLPSLKYLNLGGADLSKD 153 (176)
Q Consensus 86 ~l~~L~~L~l~~~~~~~~--~p~~~~~l~~L~~L~l~~n--~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 153 (176)
..+.+..+.+++|++... +.......|+|..|+|++| .+....... .+.. ..|++|-+.||.+...
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~-K~k~-l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELD-KLKG-LPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhh-hhcC-CCHHHeeecCCccccc
Confidence 346677777888877521 1122234577888888888 333222211 1222 2477788888887654
No 84
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=86.64 E-value=0.5 Score=21.65 Aligned_cols=12 Identities=25% Similarity=0.155 Sum_probs=6.0
Q ss_pred ceEeecCCCCcc
Q 038633 41 DTYEDDAGHELG 52 (176)
Q Consensus 41 l~~L~l~~n~l~ 52 (176)
|++|+|++|.+.
T Consensus 4 L~~LdL~~N~i~ 15 (28)
T smart00368 4 LRELDLSNNKLG 15 (28)
T ss_pred cCEEECCCCCCC
Confidence 444555555544
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=84.22 E-value=1.1 Score=20.31 Aligned_cols=16 Identities=31% Similarity=0.488 Sum_probs=12.4
Q ss_pred CCCccEEeccCCCCCC
Q 038633 137 LPSLKYLNLGGADLSK 152 (176)
Q Consensus 137 l~~L~~L~l~~n~l~~ 152 (176)
+.+|+.|+++.|.+..
T Consensus 1 L~~L~~L~L~~NkI~~ 16 (26)
T smart00365 1 LTNLEELDLSQNKIKK 16 (26)
T ss_pred CCccCEEECCCCccce
Confidence 3578889999998863
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=82.14 E-value=0.9 Score=20.56 Aligned_cols=17 Identities=29% Similarity=0.624 Sum_probs=10.3
Q ss_pred CccEEEeecccCCCCcch
Q 038633 89 ELRYLNLSGSFFSGTIPQ 106 (176)
Q Consensus 89 ~L~~L~l~~~~~~~~~p~ 106 (176)
+|+.|++++|++. .+|+
T Consensus 3 ~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLT-SLPE 19 (26)
T ss_pred ccceeecCCCccc-cCcc
Confidence 4666666666665 5554
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=72.91 E-value=2.1 Score=34.64 Aligned_cols=64 Identities=25% Similarity=0.197 Sum_probs=40.8
Q ss_pred CCCCCCEEEccCCccCcccccccccCCCCCccEEeccCC--CCCCchhhhHHHhhccccCcEeeCcCCC
Q 038633 110 NLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGA--DLSKDAAYWLESISMLRSLVELRLPNCN 176 (176)
Q Consensus 110 ~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~~~~L~~L~l~~n~ 176 (176)
..+.+..+++++|++.........-..-++|..|+|++| .+... .+ ...++ ...|++|-+.||.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~-~e-l~K~k-~l~Leel~l~GNP 281 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE-SE-LDKLK-GLPLEELVLEGNP 281 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch-hh-hhhhc-CCCHHHeeecCCc
Confidence 457788999999998544443333456678999999999 43322 11 11222 2467788887773
No 88
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=66.37 E-value=4.5 Score=17.87 Aligned_cols=11 Identities=45% Similarity=0.776 Sum_probs=5.7
Q ss_pred ccCcEeeCcCC
Q 038633 165 RSLVELRLPNC 175 (176)
Q Consensus 165 ~~L~~L~l~~n 175 (176)
+.|++|++++|
T Consensus 2 ~~L~~L~l~~C 12 (26)
T smart00367 2 PNLRELDLSGC 12 (26)
T ss_pred CCCCEeCCCCC
Confidence 34555555554
No 89
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=56.39 E-value=9.9 Score=36.94 Aligned_cols=34 Identities=24% Similarity=0.159 Sum_probs=18.9
Q ss_pred ecCCCCccccchhhhcCCCCCcEEEccCccccCC
Q 038633 45 DDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGF 78 (176)
Q Consensus 45 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~ 78 (176)
||++|+|+..-+..|..+++|++|+|++|.+.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CD 34 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECD 34 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccc
Confidence 3555555544445555556666666666655543
No 90
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=38.18 E-value=22 Score=34.81 Aligned_cols=32 Identities=28% Similarity=0.381 Sum_probs=24.9
Q ss_pred EccCccccCCcchhhhcCcCCccEEEeecccCC
Q 038633 69 DLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFS 101 (176)
Q Consensus 69 ~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~ 101 (176)
||++|++... .+..|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstL-p~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTI-EEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCcc-ChHHhccCCCceEEEeeCCccc
Confidence 5788888854 4556778889999999988774
No 91
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=26.66 E-value=1.4e+02 Score=24.44 Aligned_cols=37 Identities=16% Similarity=0.196 Sum_probs=21.5
Q ss_pred ccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCCC
Q 038633 140 LKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN 176 (176)
Q Consensus 140 L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n~ 176 (176)
+..+.++.+.+......+.-.+..-+.+..|++++|.
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~ 451 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNG 451 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCC
Confidence 4456666666654444433344555677777777763
No 92
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=23.48 E-value=40 Score=15.18 Aligned_cols=14 Identities=29% Similarity=0.377 Sum_probs=8.7
Q ss_pred hhcCCCCCcEEEcc
Q 038633 58 SLLQLKDLKYLDLS 71 (176)
Q Consensus 58 ~l~~l~~L~~L~l~ 71 (176)
++..+++|+.||..
T Consensus 8 Vi~~LPqL~~LD~~ 21 (26)
T smart00446 8 VIRLLPQLRKLDXX 21 (26)
T ss_pred HHHHCCccceeccc
Confidence 45556777777653
Done!