Query 038633
Match_columns 176
No_of_seqs 117 out of 1335
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 22:47:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038633.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038633hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m19_A Variable lymphocyte rec 99.9 1.6E-23 5.4E-28 150.1 16.3 157 14-176 34-190 (251)
2 2o6q_A Variable lymphocyte rec 99.9 1.1E-22 3.7E-27 147.2 16.2 159 11-175 57-215 (270)
3 1ozn_A Reticulon 4 receptor; N 99.9 1.2E-22 4.1E-27 147.9 16.2 159 12-176 77-236 (285)
4 1ogq_A PGIP-2, polygalacturona 99.9 4.4E-24 1.5E-28 157.6 8.4 148 3-153 38-189 (313)
5 1ozn_A Reticulon 4 receptor; N 99.9 1E-22 3.6E-27 148.2 15.3 159 11-175 52-211 (285)
6 3rfs_A Internalin B, repeat mo 99.9 1.4E-22 4.8E-27 146.8 15.7 161 8-176 56-216 (272)
7 2o6q_A Variable lymphocyte rec 99.9 3.2E-22 1.1E-26 144.7 16.5 157 14-176 36-192 (270)
8 3rgz_A Protein brassinosteroid 99.9 9.3E-23 3.2E-27 166.4 14.3 161 10-176 485-715 (768)
9 1ogq_A PGIP-2, polygalacturona 99.9 1E-22 3.6E-27 150.3 12.5 158 11-176 121-279 (313)
10 4fcg_A Uncharacterized protein 99.9 2.1E-22 7.2E-27 149.6 12.5 157 11-175 100-287 (328)
11 2v9t_B SLIT homolog 2 protein 99.9 2.2E-21 7.4E-26 136.5 14.6 150 18-176 14-163 (220)
12 1p9a_G Platelet glycoprotein I 99.9 1.5E-21 5.1E-26 142.7 13.8 131 37-175 75-205 (290)
13 4fcg_A Uncharacterized protein 99.9 6.9E-22 2.4E-26 146.8 12.2 158 10-175 145-311 (328)
14 2z66_A Variable lymphocyte rec 99.9 8.8E-22 3E-26 144.6 12.6 161 11-176 97-259 (306)
15 3m19_A Variable lymphocyte rec 99.9 4E-21 1.4E-25 137.6 15.1 153 15-176 14-166 (251)
16 3rgz_A Protein brassinosteroid 99.9 1.2E-21 4.2E-26 159.8 13.6 156 14-175 393-548 (768)
17 2id5_A Lingo-1, leucine rich r 99.9 2.3E-21 8E-26 150.3 14.1 156 14-175 31-186 (477)
18 1p9a_G Platelet glycoprotein I 99.9 6.9E-21 2.3E-25 139.2 15.0 154 14-176 30-183 (290)
19 2z62_A TOLL-like receptor 4, v 99.9 5.2E-21 1.8E-25 138.7 13.7 160 14-175 27-187 (276)
20 2xot_A Amphoterin-induced prot 99.9 3.7E-21 1.3E-25 144.5 13.2 157 14-176 38-200 (361)
21 3zyi_A Leucine-rich repeat-con 99.9 7.7E-21 2.6E-25 146.6 14.5 86 15-101 75-160 (452)
22 2v70_A SLIT-2, SLIT homolog 2 99.9 1.8E-20 6E-25 131.9 14.9 159 8-176 5-164 (220)
23 3e6j_A Variable lymphocyte rec 99.9 1.7E-20 5.7E-25 132.7 14.7 136 14-153 39-174 (229)
24 3zyj_A Leucine-rich repeat-con 99.9 6.8E-21 2.3E-25 146.5 13.6 84 16-100 65-148 (440)
25 3vq2_A TLR4, TOLL-like recepto 99.9 9E-21 3.1E-25 150.8 14.7 160 14-175 31-191 (606)
26 4g8a_A TOLL-like receptor 4; l 99.9 8.7E-21 3E-25 151.0 14.3 159 15-175 52-211 (635)
27 2z62_A TOLL-like receptor 4, v 99.9 6E-21 2.1E-25 138.3 12.2 164 9-176 46-235 (276)
28 3rfs_A Internalin B, repeat mo 99.9 1.9E-20 6.6E-25 135.5 14.8 158 9-176 35-192 (272)
29 3t6q_A CD180 antigen; protein- 99.9 1.1E-20 3.8E-25 150.2 14.8 157 14-176 32-190 (606)
30 3v47_A TOLL-like receptor 5B a 99.9 1.4E-20 4.7E-25 145.0 14.7 131 40-176 276-406 (455)
31 3zyj_A Leucine-rich repeat-con 99.9 2E-20 6.7E-25 143.9 14.8 39 134-175 251-289 (440)
32 3zyi_A Leucine-rich repeat-con 99.8 1.6E-20 5.4E-25 144.9 14.0 161 8-176 92-253 (452)
33 2z80_A TOLL-like receptor 2, v 99.8 5.4E-21 1.8E-25 143.1 11.0 154 15-175 52-208 (353)
34 2z66_A Variable lymphocyte rec 99.8 4.7E-21 1.6E-25 140.7 10.3 136 35-176 97-234 (306)
35 4ezg_A Putative uncharacterize 99.8 7.6E-21 2.6E-25 131.5 10.7 151 12-176 41-192 (197)
36 2id5_A Lingo-1, leucine rich r 99.8 5.6E-21 1.9E-25 148.1 11.1 161 9-175 50-210 (477)
37 3vq2_A TLR4, TOLL-like recepto 99.8 1.6E-20 5.4E-25 149.3 13.6 161 10-176 394-556 (606)
38 3o6n_A APL1; leucine-rich repe 99.8 3.1E-20 1.1E-24 140.7 14.6 112 11-124 65-177 (390)
39 2z80_A TOLL-like receptor 2, v 99.8 7.2E-21 2.4E-25 142.4 10.8 161 9-176 70-233 (353)
40 3oja_B Anopheles plasmodium-re 99.8 2.6E-20 8.8E-25 148.2 14.3 114 11-125 71-184 (597)
41 2o6s_A Variable lymphocyte rec 99.8 8.6E-20 2.9E-24 127.1 15.3 137 14-153 27-163 (208)
42 3t6q_A CD180 antigen; protein- 99.8 4.4E-20 1.5E-24 146.8 15.6 161 10-176 395-558 (606)
43 2v9t_B SLIT homolog 2 protein 99.8 3.5E-20 1.2E-24 130.3 13.4 136 14-152 31-166 (220)
44 1ziw_A TOLL-like receptor 3; i 99.8 4.4E-20 1.5E-24 148.6 15.6 157 14-176 24-182 (680)
45 3v47_A TOLL-like receptor 5B a 99.8 2E-20 6.9E-25 144.1 12.3 140 14-156 29-172 (455)
46 2z81_A CD282 antigen, TOLL-lik 99.8 1.3E-20 4.4E-25 148.2 11.2 154 14-172 25-179 (549)
47 3e6j_A Variable lymphocyte rec 99.8 8.6E-20 2.9E-24 129.1 14.2 149 18-176 22-170 (229)
48 2xwt_C Thyrotropin receptor; s 99.8 1.5E-20 5E-25 133.7 9.7 152 16-175 32-215 (239)
49 2z63_A TOLL-like receptor 4, v 99.8 6.7E-20 2.3E-24 144.6 14.0 158 14-176 27-188 (570)
50 2o6s_A Variable lymphocyte rec 99.8 1.9E-19 6.5E-24 125.4 14.7 150 18-176 10-159 (208)
51 3o6n_A APL1; leucine-rich repe 99.8 1.9E-19 6.6E-24 136.3 15.9 82 87-175 247-328 (390)
52 4eco_A Uncharacterized protein 99.8 8.1E-21 2.8E-25 152.2 8.7 166 4-176 73-341 (636)
53 2ft3_A Biglycan; proteoglycan, 99.8 9.6E-20 3.3E-24 135.2 13.2 156 14-176 53-252 (332)
54 1xku_A Decorin; proteoglycan, 99.8 1.8E-19 6E-24 133.7 14.5 157 15-175 52-250 (330)
55 1wwl_A Monocyte differentiatio 99.8 8.9E-21 3.1E-25 139.8 7.4 159 13-175 93-263 (312)
56 3oja_B Anopheles plasmodium-re 99.8 2.3E-19 8E-24 142.7 16.1 84 86-176 252-335 (597)
57 2z81_A CD282 antigen, TOLL-lik 99.8 4.5E-20 1.5E-24 145.2 11.8 164 8-176 43-207 (549)
58 1h6u_A Internalin H; cell adhe 99.8 5.2E-19 1.8E-23 130.2 16.7 149 9-175 57-205 (308)
59 1xku_A Decorin; proteoglycan, 99.8 3.1E-19 1.1E-23 132.4 15.4 159 11-176 72-274 (330)
60 2v70_A SLIT-2, SLIT homolog 2 99.8 2E-19 7E-24 126.4 13.5 137 14-153 31-168 (220)
61 2z63_A TOLL-like receptor 4, v 99.8 4.3E-20 1.5E-24 145.7 10.4 159 11-176 369-529 (570)
62 2xot_A Amphoterin-induced prot 99.8 1.6E-19 5.5E-24 135.6 12.9 162 8-176 12-174 (361)
63 2z7x_B TOLL-like receptor 1, v 99.8 2.3E-19 8E-24 140.3 14.3 156 12-176 321-479 (520)
64 3j0a_A TOLL-like receptor 5; m 99.8 6.6E-20 2.3E-24 151.0 11.5 160 13-175 22-184 (844)
65 4eco_A Uncharacterized protein 99.8 1.6E-20 5.3E-25 150.5 7.4 159 9-176 200-388 (636)
66 2xwt_C Thyrotropin receptor; s 99.8 6.2E-20 2.1E-24 130.4 9.7 131 38-176 30-167 (239)
67 1ziw_A TOLL-like receptor 3; i 99.8 1.6E-19 5.4E-24 145.4 13.0 161 8-172 42-202 (680)
68 2ft3_A Biglycan; proteoglycan, 99.8 4.6E-19 1.6E-23 131.6 14.0 156 11-176 98-275 (332)
69 4ecn_A Leucine-rich repeat pro 99.8 8.2E-20 2.8E-24 150.2 10.7 158 9-176 442-630 (876)
70 4ecn_A Leucine-rich repeat pro 99.8 3.2E-20 1.1E-24 152.6 8.2 167 4-176 315-584 (876)
71 1h6t_A Internalin B; cell adhe 99.8 8.4E-19 2.9E-23 128.1 14.3 148 10-175 63-210 (291)
72 4g8a_A TOLL-like receptor 4; l 99.8 4.1E-19 1.4E-23 141.3 13.5 132 39-176 52-184 (635)
73 1h6t_A Internalin B; cell adhe 99.8 1.2E-18 3.9E-23 127.4 14.7 149 10-176 41-189 (291)
74 1xeu_A Internalin C; cellular 99.8 3.9E-19 1.3E-23 128.2 11.7 148 9-175 35-182 (263)
75 1wwl_A Monocyte differentiatio 99.8 5.5E-20 1.9E-24 135.6 7.1 158 17-176 65-239 (312)
76 3oja_A Leucine-rich immune mol 99.8 5E-19 1.7E-23 137.8 12.5 103 65-176 122-225 (487)
77 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 9.2E-19 3.2E-23 138.3 13.7 156 12-176 350-508 (562)
78 1h6u_A Internalin H; cell adhe 99.8 1.7E-18 5.8E-23 127.5 14.2 148 10-175 80-227 (308)
79 3o53_A Protein LRIM1, AGAP0063 99.8 3.2E-19 1.1E-23 131.7 10.2 150 15-175 34-224 (317)
80 4glp_A Monocyte differentiatio 99.8 3.1E-19 1.1E-23 131.4 10.0 152 13-176 143-305 (310)
81 4fmz_A Internalin; leucine ric 99.8 4.7E-18 1.6E-22 126.7 16.3 149 11-175 173-321 (347)
82 2ell_A Acidic leucine-rich nuc 99.8 5.8E-19 2E-23 118.9 10.2 133 39-175 24-157 (168)
83 2je0_A Acidic leucine-rich nuc 99.8 4.6E-19 1.6E-23 117.2 8.9 133 38-174 16-149 (149)
84 4glp_A Monocyte differentiatio 99.8 6.2E-20 2.1E-24 135.1 5.1 131 38-175 144-282 (310)
85 2ast_B S-phase kinase-associat 99.8 7.6E-20 2.6E-24 135.7 5.0 160 13-175 91-257 (336)
86 1m9s_A Internalin B; cell inva 99.8 3.7E-18 1.3E-22 135.9 14.9 149 9-175 59-207 (605)
87 4ezg_A Putative uncharacterize 99.8 2E-18 6.8E-23 119.3 11.6 136 8-152 59-195 (197)
88 1w8a_A SLIT protein; signaling 99.8 3.9E-18 1.3E-22 117.5 12.7 132 18-155 11-143 (192)
89 4fmz_A Internalin; leucine ric 99.8 6E-18 2.1E-22 126.1 14.6 152 9-176 193-344 (347)
90 3j0a_A TOLL-like receptor 5; m 99.8 1E-18 3.5E-23 143.9 11.3 164 6-175 39-214 (844)
91 3o53_A Protein LRIM1, AGAP0063 99.8 1.1E-18 3.7E-23 128.9 10.1 129 38-176 119-248 (317)
92 2ell_A Acidic leucine-rich nuc 99.8 1.8E-18 6.1E-23 116.5 10.1 138 13-154 22-163 (168)
93 2z7x_B TOLL-like receptor 1, v 99.8 6.8E-18 2.3E-22 132.1 14.3 133 36-176 321-455 (520)
94 3oja_A Leucine-rich immune mol 99.8 1.9E-18 6.4E-23 134.6 10.4 129 38-176 119-248 (487)
95 2ast_B S-phase kinase-associat 99.8 4.1E-19 1.4E-23 131.8 6.2 162 10-175 113-282 (336)
96 1o6v_A Internalin A; bacterial 99.8 1.7E-17 5.9E-22 128.4 15.4 147 11-175 239-385 (466)
97 1m9s_A Internalin B; cell inva 99.8 1.1E-17 3.9E-22 133.1 14.3 150 9-176 37-186 (605)
98 1w8a_A SLIT protein; signaling 99.8 5.1E-18 1.7E-22 116.9 10.6 126 42-176 11-137 (192)
99 2je0_A Acidic leucine-rich nuc 99.8 5.6E-18 1.9E-22 111.9 9.9 132 13-147 15-149 (149)
100 2wfh_A SLIT homolog 2 protein 99.8 2.6E-17 8.9E-22 113.4 13.1 127 18-151 13-139 (193)
101 2wfh_A SLIT homolog 2 protein 99.8 1.8E-17 6.1E-22 114.2 12.2 125 42-176 13-137 (193)
102 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.1E-17 3.8E-22 132.1 12.7 150 12-175 28-179 (562)
103 2o6r_A Variable lymphocyte rec 99.7 7.2E-17 2.5E-21 109.6 13.9 133 17-155 9-141 (177)
104 1o6v_A Internalin A; bacterial 99.7 1.1E-16 3.8E-21 123.8 16.6 103 13-124 197-299 (466)
105 1xeu_A Internalin C; cellular 99.7 1.7E-17 5.8E-22 119.6 10.6 145 13-176 17-161 (263)
106 3goz_A Leucine-rich repeat-con 99.7 3.6E-18 1.2E-22 128.3 6.2 109 15-124 22-150 (362)
107 2ca6_A RAN GTPase-activating p 99.7 4.4E-18 1.5E-22 128.7 6.2 139 36-175 91-254 (386)
108 1a9n_A U2A', U2A'; complex (nu 99.7 3.1E-17 1.1E-21 111.4 9.1 137 10-151 14-153 (176)
109 2o6r_A Variable lymphocyte rec 99.7 1.7E-16 5.8E-21 107.7 12.4 126 42-176 10-135 (177)
110 2ca6_A RAN GTPase-activating p 99.7 5.1E-18 1.7E-22 128.4 5.1 164 12-175 91-284 (386)
111 3goz_A Leucine-rich repeat-con 99.7 5.5E-18 1.9E-22 127.3 4.3 166 10-176 45-236 (362)
112 1a9n_A U2A', U2A'; complex (nu 99.7 4.2E-17 1.4E-21 110.7 8.2 137 34-176 14-151 (176)
113 3bz5_A Internalin-J, INLJ; leu 99.7 2.5E-16 8.4E-21 121.8 13.3 148 10-175 37-201 (457)
114 3bz5_A Internalin-J, INLJ; leu 99.7 8.1E-16 2.8E-20 118.9 14.7 146 9-176 58-223 (457)
115 1dce_A Protein (RAB geranylger 99.7 1.5E-16 5.1E-21 125.9 10.5 126 40-172 442-567 (567)
116 4b8c_D Glucose-repressible alc 99.7 2.9E-17 1E-21 133.3 6.5 120 32-158 217-336 (727)
117 3cvr_A Invasion plasmid antige 99.7 1.6E-15 5.3E-20 119.9 13.7 136 14-176 99-241 (571)
118 1ds9_A Outer arm dynein; leuci 99.7 1.3E-18 4.3E-23 120.4 -3.6 155 10-171 13-180 (198)
119 1z7x_W Ribonuclease inhibitor; 99.7 2.4E-17 8.2E-22 127.0 3.1 164 12-176 224-409 (461)
120 4b8c_D Glucose-repressible alc 99.7 2.2E-16 7.5E-21 128.2 8.1 150 15-176 173-327 (727)
121 1dce_A Protein (RAB geranylger 99.6 2.9E-15 9.9E-20 118.5 10.9 124 16-145 442-567 (567)
122 3g39_A Variable lymphocyte rec 99.6 6E-15 2E-19 99.6 11.0 105 17-125 11-115 (170)
123 1z7x_W Ribonuclease inhibitor; 99.6 5.5E-16 1.9E-20 119.4 5.9 164 12-176 110-295 (461)
124 1ds9_A Outer arm dynein; leuci 99.6 2.4E-17 8.1E-22 114.0 -2.4 128 39-176 18-151 (198)
125 1jl5_A Outer protein YOPM; leu 99.6 1.4E-14 4.8E-19 111.9 12.8 77 39-124 131-207 (454)
126 3cvr_A Invasion plasmid antige 99.6 1.3E-14 4.4E-19 114.7 12.6 115 16-152 60-174 (571)
127 3g39_A Variable lymphocyte rec 99.6 8.7E-15 3E-19 98.8 10.0 108 41-154 11-118 (170)
128 1jl5_A Outer protein YOPM; leu 99.6 2.3E-14 7.8E-19 110.7 13.2 78 15-101 131-208 (454)
129 2r9u_A Variable lymphocyte rec 99.6 2.1E-14 7.2E-19 97.2 11.2 104 18-125 15-118 (174)
130 2r9u_A Variable lymphocyte rec 99.6 1.4E-14 4.7E-19 98.2 9.9 108 42-155 15-122 (174)
131 3g06_A SSPH2 (leucine-rich rep 99.6 3.9E-14 1.3E-18 113.1 14.0 75 88-176 221-295 (622)
132 4ay9_X Follicle-stimulating ho 99.6 1.4E-14 4.7E-19 108.3 10.4 156 14-176 29-213 (350)
133 4ay9_X Follicle-stimulating ho 99.6 1E-14 3.6E-19 109.0 9.0 104 18-125 12-117 (350)
134 3un9_A NLR family member X1; l 99.6 3.9E-16 1.3E-20 117.6 1.3 162 14-176 71-250 (372)
135 3g06_A SSPH2 (leucine-rich rep 99.5 8.9E-14 3.1E-18 111.0 13.1 93 15-124 61-153 (622)
136 3sb4_A Hypothetical leucine ri 99.4 8.8E-13 3E-17 97.7 11.2 103 62-172 225-328 (329)
137 3un9_A NLR family member X1; l 99.4 9.6E-15 3.3E-19 110.1 0.4 157 15-171 101-274 (372)
138 3sb4_A Hypothetical leucine ri 99.4 5E-13 1.7E-17 99.0 9.3 82 87-175 225-307 (329)
139 3ogk_B Coronatine-insensitive 99.4 4.4E-13 1.5E-17 106.2 8.2 83 13-97 162-252 (592)
140 2ifg_A High affinity nerve gro 99.4 1.2E-12 4.1E-17 97.5 9.6 103 19-125 12-116 (347)
141 2ifg_A High affinity nerve gro 99.4 2.1E-12 7.3E-17 96.1 10.9 103 44-152 13-117 (347)
142 3ogk_B Coronatine-insensitive 99.3 1.4E-12 4.8E-17 103.3 5.3 134 37-173 162-326 (592)
143 2p1m_B Transport inhibitor res 99.2 3E-12 1E-16 101.4 4.1 162 11-175 62-245 (594)
144 2p1m_B Transport inhibitor res 99.2 1.1E-12 3.6E-17 104.0 0.2 134 38-176 371-517 (594)
145 4fdw_A Leucine rich hypothetic 99.1 9E-10 3.1E-14 83.7 11.3 156 9-175 174-355 (401)
146 1io0_A Tropomodulin; LRR prote 99.1 8.1E-11 2.8E-15 80.3 4.6 113 38-150 35-163 (185)
147 2ra8_A Uncharacterized protein 99.0 4.8E-10 1.7E-14 84.1 4.7 135 36-175 169-317 (362)
148 1io0_A Tropomodulin; LRR prote 99.0 2.6E-10 8.9E-15 77.7 2.9 126 51-176 24-162 (185)
149 4fdw_A Leucine rich hypothetic 98.9 5.6E-09 1.9E-13 79.4 9.8 154 9-174 220-379 (401)
150 2ra8_A Uncharacterized protein 98.9 9E-10 3.1E-14 82.6 5.1 157 12-175 169-340 (362)
151 3e4g_A ATP synthase subunit S, 98.8 5E-09 1.7E-13 70.5 5.2 34 40-73 62-95 (176)
152 3e4g_A ATP synthase subunit S, 98.8 6.2E-09 2.1E-13 70.0 4.8 104 62-168 60-170 (176)
153 3rw6_A Nuclear RNA export fact 98.7 2.6E-09 8.8E-14 76.7 2.1 100 44-144 148-257 (267)
154 3rw6_A Nuclear RNA export fact 98.7 6.5E-09 2.2E-13 74.7 2.9 86 85-172 167-258 (267)
155 1pgv_A TMD-1, tropomodulin TMD 98.2 1.2E-06 4.1E-11 59.9 4.9 121 55-175 33-167 (197)
156 4h09_A Hypothetical leucine ri 98.2 2E-05 6.8E-10 59.1 10.6 128 14-148 216-343 (379)
157 4h09_A Hypothetical leucine ri 98.1 3.8E-05 1.3E-09 57.6 11.2 130 35-174 213-342 (379)
158 1pgv_A TMD-1, tropomodulin TMD 98.1 3E-06 1E-10 57.9 4.6 115 36-150 38-169 (197)
159 4gt6_A Cell surface protein; l 98.1 2.9E-05 9.8E-10 58.7 10.2 132 31-175 257-388 (394)
160 4fs7_A Uncharacterized protein 98.0 3.2E-05 1.1E-09 58.4 9.5 83 59-147 293-375 (394)
161 4fs7_A Uncharacterized protein 98.0 4.8E-05 1.6E-09 57.4 10.3 125 37-174 251-375 (394)
162 4gt6_A Cell surface protein; l 98.0 2.8E-05 9.6E-10 58.7 9.0 115 51-175 253-367 (394)
163 3rfe_A Platelet glycoprotein I 97.2 0.00055 1.9E-08 43.6 5.1 55 43-100 12-67 (130)
164 3rfe_A Platelet glycoprotein I 96.8 0.0022 7.5E-08 40.7 5.2 58 19-78 12-70 (130)
165 2lz0_A Uncharacterized protein 69.7 5.7 0.0002 23.5 3.5 43 52-96 9-51 (100)
166 2lz0_A Uncharacterized protein 67.0 12 0.00042 22.0 4.6 46 74-121 7-52 (100)
No 1
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.92 E-value=1.6e-23 Score=150.12 Aligned_cols=157 Identities=20% Similarity=0.107 Sum_probs=137.8
Q ss_pred ccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEE
Q 038633 14 LSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYL 93 (176)
Q Consensus 14 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L 93 (176)
.+.++.|++++|.+.+..+..+..+.+|++|++++|.+++..+..|..+++|++|++++|.+... .+..+..+++|++|
T Consensus 34 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L 112 (251)
T 3m19_A 34 PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL-PLGVFDHLTQLDKL 112 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEE
T ss_pred CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccccc-ChhHhcccCCCCEE
Confidence 46799999999999988887888999999999999999988888899999999999999999965 66778899999999
Q ss_pred EeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCc
Q 038633 94 NLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLP 173 (176)
Q Consensus 94 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~ 173 (176)
++++|++....+..+..+++|+.|++++|.++ ......+..+++|++|++++|.+.+.++. .+..+++|+.|+++
T Consensus 113 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~l~ 187 (251)
T 3m19_A 113 YLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ--SIPAGAFDKLTNLQTLSLSTNQLQSVPHG---AFDRLGKLQTITLF 187 (251)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCSCCCTT---TTTTCTTCCEEECC
T ss_pred EcCCCcCCCcChhHhccCCcccEEECcCCcCC--ccCHHHcCcCcCCCEEECCCCcCCccCHH---HHhCCCCCCEEEee
Confidence 99999998555556788999999999999984 33334588999999999999999988775 77889999999999
Q ss_pred CCC
Q 038633 174 NCN 176 (176)
Q Consensus 174 ~n~ 176 (176)
+|.
T Consensus 188 ~N~ 190 (251)
T 3m19_A 188 GNQ 190 (251)
T ss_dssp SCC
T ss_pred CCc
Confidence 984
No 2
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=1.1e-22 Score=147.19 Aligned_cols=159 Identities=23% Similarity=0.143 Sum_probs=92.6
Q ss_pred cccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCc
Q 038633 11 LHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKEL 90 (176)
Q Consensus 11 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L 90 (176)
+..+++|+.|++++|.+....+..+..+.+|++|++++|.+++..+..+..+++|++|++++|.+... .+..+..+++|
T Consensus 57 ~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L 135 (270)
T 2o6q_A 57 FHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSL-PPRVFDSLTKL 135 (270)
T ss_dssp SSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCC-CTTTTTTCTTC
T ss_pred hcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCee-CHHHhCcCcCC
Confidence 44455555555555555544444445555666666666665544444555566666666666666543 44445566666
Q ss_pred cEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEe
Q 038633 91 RYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVEL 170 (176)
Q Consensus 91 ~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L 170 (176)
++|++++|++....+..++.+++|+.|++++|.++. .....+..+++|++|++++|.+.+.++. .+..+++|+.|
T Consensus 136 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L 210 (270)
T 2o6q_A 136 TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKR--VPEGAFDKLTELKTLKLDNNQLKRVPEG---AFDSLEKLKML 210 (270)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC--CCTTTTTTCTTCCEEECCSSCCSCCCTT---TTTTCTTCCEE
T ss_pred CEEECCCCcCCccCHhHccCCcccceeEecCCcCcE--eChhHhccCCCcCEEECCCCcCCcCCHH---HhccccCCCEE
Confidence 666666666653333345566666666666666632 2223356667777777777777655553 45666777777
Q ss_pred eCcCC
Q 038633 171 RLPNC 175 (176)
Q Consensus 171 ~l~~n 175 (176)
++++|
T Consensus 211 ~l~~N 215 (270)
T 2o6q_A 211 QLQEN 215 (270)
T ss_dssp ECCSS
T ss_pred EecCC
Confidence 77766
No 3
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.90 E-value=1.2e-22 Score=147.93 Aligned_cols=159 Identities=21% Similarity=0.073 Sum_probs=83.9
Q ss_pred ccccccceeeccCcc-ccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCc
Q 038633 12 HLLSRIFALSLLRCC-SVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKEL 90 (176)
Q Consensus 12 ~~~~~l~~l~l~~~~-~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L 90 (176)
..+++|+.|++++|. +....+..+..+.+|++|++++|.+++..+..+..+++|++|++++|.+... .+..+..+++|
T Consensus 77 ~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L 155 (285)
T 1ozn_A 77 TGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL-PDDTFRDLGNL 155 (285)
T ss_dssp TTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTC
T ss_pred CCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccccc-CHhHhccCCCc
Confidence 334444455554443 3333333444445555555555555444444455555555555555555532 33334455555
Q ss_pred cEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEe
Q 038633 91 RYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVEL 170 (176)
Q Consensus 91 ~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L 170 (176)
++|++++|++.+..+..+..+++|+.|++++|.+. ...+..+..+++|++|++++|.+.+.++. .+..+++|+.|
T Consensus 156 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L 230 (285)
T 1ozn_A 156 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA--HVHPHAFRDLGRLMTLYLFANNLSALPTE---ALAPLRALQYL 230 (285)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC--EECTTTTTTCTTCCEEECCSSCCSCCCHH---HHTTCTTCCEE
T ss_pred cEEECCCCcccccCHHHhcCccccCEEECCCCccc--ccCHhHccCcccccEeeCCCCcCCcCCHH---HcccCcccCEE
Confidence 55555555554222223555555555555555552 22233456666777777777777665554 56667777777
Q ss_pred eCcCCC
Q 038633 171 RLPNCN 176 (176)
Q Consensus 171 ~l~~n~ 176 (176)
++++|.
T Consensus 231 ~l~~N~ 236 (285)
T 1ozn_A 231 RLNDNP 236 (285)
T ss_dssp ECCSSC
T ss_pred eccCCC
Confidence 777763
No 4
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.90 E-value=4.4e-24 Score=157.65 Aligned_cols=148 Identities=20% Similarity=0.281 Sum_probs=84.0
Q ss_pred ceeecccccccccccceeeccCccccC--CCCcCcccCCcceEeecCC-CCccccchhhhcCCCCCcEEEccCccccCCc
Q 038633 3 YFVFALSDLHLLSRIFALSLLRCCSVG--SALAQPFRDSFDTYEDDAG-HELGGPISPSLLQLKDLKYLDLSMNNFKGFK 79 (176)
Q Consensus 3 ~~~~~~~~~~~~~~l~~l~l~~~~~~~--~~~~~~~~~~~l~~L~l~~-n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 79 (176)
|.++.+.......+++.|+++++.+.+ ..+..+..+.+|++|++++ |.+.+.+|..+..+++|++|++++|.+.+.
T Consensus 38 w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~- 116 (313)
T 1ogq_A 38 WLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA- 116 (313)
T ss_dssp STTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-
T ss_pred CcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCc-
Confidence 666655433223456666666666655 4555556666666666663 666556666666666666666666666554
Q ss_pred chhhhcCcCCccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCC-CccEEeccCCCCCCc
Q 038633 80 VPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLP-SLKYLNLGGADLSKD 153 (176)
Q Consensus 80 ~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~ 153 (176)
.|..+..+++|++|++++|++.+..|..++.+++|++|++++|++. ...+..+..++ +|++|++++|.+.+.
T Consensus 117 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~~p~~l~~l~~~L~~L~L~~N~l~~~ 189 (313)
T 1ogq_A 117 IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS--GAIPDSYGSFSKLFTSMTISRNRLTGK 189 (313)
T ss_dssp CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCE--EECCGGGGCCCTTCCEEECCSSEEEEE
T ss_pred CCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCccc--CcCCHHHhhhhhcCcEEECcCCeeecc
Confidence 5555666666666666666665555555666666666666666552 12222244444 555555555554433
No 5
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.90 E-value=1e-22 Score=148.24 Aligned_cols=159 Identities=19% Similarity=0.110 Sum_probs=86.5
Q ss_pred cccccccceeeccCccccCCCCcCcccCCcceEeecCCCC-ccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCC
Q 038633 11 LHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHE-LGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKE 89 (176)
Q Consensus 11 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~ 89 (176)
+..+++++.|++++|.+.+..+..+..+.+|++|++++|. ++...+..+..+++|++|++++|.+... .|..+..+++
T Consensus 52 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~ 130 (285)
T 1ozn_A 52 FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQEL-GPGLFRGLAA 130 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTT
T ss_pred cccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEE-CHhHhhCCcC
Confidence 3444555555555555544444444555555555555554 4444445555555555555555555543 4445555555
Q ss_pred ccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcE
Q 038633 90 LRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVE 169 (176)
Q Consensus 90 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~ 169 (176)
|++|++++|++....+..++.+++|+.|++++|.++ ......+..+++|++|++++|.+.+..+. .++.+++|+.
T Consensus 131 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~ 205 (285)
T 1ozn_A 131 LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS--SVPERAFRGLHSLDRLLLHQNRVAHVHPH---AFRDLGRLMT 205 (285)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--EECTTTTTTCTTCCEEECCSSCCCEECTT---TTTTCTTCCE
T ss_pred CCEEECCCCcccccCHhHhccCCCccEEECCCCccc--ccCHHHhcCccccCEEECCCCcccccCHh---HccCcccccE
Confidence 666666665555333334555566666666666552 22222355566666666666666655444 5556666777
Q ss_pred eeCcCC
Q 038633 170 LRLPNC 175 (176)
Q Consensus 170 L~l~~n 175 (176)
|++++|
T Consensus 206 L~l~~n 211 (285)
T 1ozn_A 206 LYLFAN 211 (285)
T ss_dssp EECCSS
T ss_pred eeCCCC
Confidence 776665
No 6
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=1.4e-22 Score=146.78 Aligned_cols=161 Identities=24% Similarity=0.166 Sum_probs=136.5
Q ss_pred ccccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCc
Q 038633 8 LSDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSL 87 (176)
Q Consensus 8 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l 87 (176)
++.+..+++++.|++++|.+.+. .....+.+|++|++++|.+++..+..+..+++|++|++++|.+... .+..+..+
T Consensus 56 ~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l 132 (272)
T 3rfs_A 56 VQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSL-PDGVFDKL 132 (272)
T ss_dssp CTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTC
T ss_pred ccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCcc-CHHHhccC
Confidence 45577789999999999988763 3567888999999999999887777889999999999999999965 66668889
Q ss_pred CCccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccC
Q 038633 88 KELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSL 167 (176)
Q Consensus 88 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L 167 (176)
++|++|++++|++.+..+..++.+++|+.|++++|+++ ......+..+++|++|++++|.+.+.++. .++.+++|
T Consensus 133 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L 207 (272)
T 3rfs_A 133 TNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ--SLPEGVFDKLTQLKDLRLYQNQLKSVPDG---VFDRLTSL 207 (272)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCSCCCTT---TTTTCTTC
T ss_pred CCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC--ccCHHHhcCCccCCEEECCCCcCCccCHH---HHhCCcCC
Confidence 99999999999998555566789999999999999984 33344578899999999999999988775 67889999
Q ss_pred cEeeCcCCC
Q 038633 168 VELRLPNCN 176 (176)
Q Consensus 168 ~~L~l~~n~ 176 (176)
+.|++++|.
T Consensus 208 ~~L~l~~N~ 216 (272)
T 3rfs_A 208 QYIWLHDNP 216 (272)
T ss_dssp CEEECCSSC
T ss_pred CEEEccCCC
Confidence 999999884
No 7
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.90 E-value=3.2e-22 Score=144.73 Aligned_cols=157 Identities=22% Similarity=0.147 Sum_probs=134.8
Q ss_pred ccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEE
Q 038633 14 LSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYL 93 (176)
Q Consensus 14 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L 93 (176)
.++++.|++++|.+....+..+..+.+|++|++++|.++...+..|..+++|++|++++|.+... .+..+..+++|++|
T Consensus 36 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L 114 (270)
T 2o6q_A 36 PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL-PIGVFDQLVNLAEL 114 (270)
T ss_dssp CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCC-CTTTTTTCSSCCEE
T ss_pred CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcC-CHhHcccccCCCEE
Confidence 35789999999999887777788899999999999999876667778999999999999999965 55677889999999
Q ss_pred EeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCc
Q 038633 94 NLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLP 173 (176)
Q Consensus 94 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~ 173 (176)
++++|++....+..++.+++|++|++++|.++. .....+..+++|++|++++|.+.+.++. .+..+++|++|+++
T Consensus 115 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~ 189 (270)
T 2o6q_A 115 RLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS--LPKGVFDKLTSLKELRLYNNQLKRVPEG---AFDKLTELKTLKLD 189 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCSCCCTT---TTTTCTTCCEEECC
T ss_pred ECCCCccCeeCHHHhCcCcCCCEEECCCCcCCc--cCHhHccCCcccceeEecCCcCcEeChh---HhccCCCcCEEECC
Confidence 999999986666778899999999999999843 3334578899999999999999987765 67889999999999
Q ss_pred CCC
Q 038633 174 NCN 176 (176)
Q Consensus 174 ~n~ 176 (176)
+|+
T Consensus 190 ~N~ 192 (270)
T 2o6q_A 190 NNQ 192 (270)
T ss_dssp SSC
T ss_pred CCc
Confidence 884
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=9.3e-23 Score=166.39 Aligned_cols=161 Identities=24% Similarity=0.270 Sum_probs=120.0
Q ss_pred ccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhh-----
Q 038633 10 DLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFI----- 84 (176)
Q Consensus 10 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~----- 84 (176)
.+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+.+. +|..+
T Consensus 485 ~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~-ip~~~~~~~~ 563 (768)
T 3rgz_A 485 GLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGT-IPAAMFKQSG 563 (768)
T ss_dssp GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESB-CCGGGGTTTT
T ss_pred HHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCc-CChHHhcccc
Confidence 455666777777777777766666666777777777777777777777777777777777777777654 55432
Q ss_pred -----------------------------------------------------------------cCcCCccEEEeeccc
Q 038633 85 -----------------------------------------------------------------GSLKELRYLNLSGSF 99 (176)
Q Consensus 85 -----------------------------------------------------------------~~l~~L~~L~l~~~~ 99 (176)
..+++|+.|++++|+
T Consensus 564 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~ 643 (768)
T 3rgz_A 564 KIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNM 643 (768)
T ss_dssp CBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSC
T ss_pred hhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCc
Confidence 224567788888888
Q ss_pred CCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCCC
Q 038633 100 FSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN 176 (176)
Q Consensus 100 ~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n~ 176 (176)
+.+.+|..++.+++|+.|++++|.+ ....+..+..+++|++||+++|++.+.+|. .++.++.|+.|++++|+
T Consensus 644 l~g~ip~~l~~l~~L~~L~Ls~N~l--~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~---~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 644 LSGYIPKEIGSMPYLFILNLGHNDI--SGSIPDEVGDLRGLNILDLSSNKLDGRIPQ---AMSALTMLTEIDLSNNN 715 (768)
T ss_dssp CBSCCCGGGGGCTTCCEEECCSSCC--CSCCCGGGGGCTTCCEEECCSSCCEECCCG---GGGGCCCCSEEECCSSE
T ss_pred ccccCCHHHhccccCCEEeCcCCcc--CCCCChHHhCCCCCCEEECCCCcccCcCCh---HHhCCCCCCEEECcCCc
Confidence 8778888888888888888888887 444455678888888888888888888776 77888888888888873
No 9
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.89 E-value=1e-22 Score=150.26 Aligned_cols=158 Identities=17% Similarity=0.170 Sum_probs=93.0
Q ss_pred cccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCC-CCcEEEccCccccCCcchhhhcCcCC
Q 038633 11 LHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLK-DLKYLDLSMNNFKGFKVPEFIGSLKE 89 (176)
Q Consensus 11 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~p~~~~~l~~ 89 (176)
+..+++|+.|++++|.+.+..+..+..+.+|++|++++|.+++.+|..+..++ .|++|++++|.+.+. .|..+..+.
T Consensus 121 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~-~~~~~~~l~- 198 (313)
T 1ogq_A 121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK-IPPTFANLN- 198 (313)
T ss_dssp GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEE-CCGGGGGCC-
T ss_pred HhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeecc-CChHHhCCc-
Confidence 34445555555555555544444444555555555555555545555555554 555555555555543 444554444
Q ss_pred ccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcE
Q 038633 90 LRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVE 169 (176)
Q Consensus 90 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~ 169 (176)
|++|++++|++.+..|..++.+++|+.|++++|.+.... ..+..+++|++|++++|.+.+..|. .++.+++|++
T Consensus 199 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~l~~L~~L~Ls~N~l~~~~p~---~l~~l~~L~~ 272 (313)
T 1ogq_A 199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL---GKVGLSKNLNGLDLRNNRIYGTLPQ---GLTQLKFLHS 272 (313)
T ss_dssp CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG---GGCCCCTTCCEEECCSSCCEECCCG---GGGGCTTCCE
T ss_pred ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeec---CcccccCCCCEEECcCCcccCcCCh---HHhcCcCCCE
Confidence 555555555555455556666677777777777663211 1256677888888888888766665 6777888888
Q ss_pred eeCcCCC
Q 038633 170 LRLPNCN 176 (176)
Q Consensus 170 L~l~~n~ 176 (176)
|++++|+
T Consensus 273 L~Ls~N~ 279 (313)
T 1ogq_A 273 LNVSFNN 279 (313)
T ss_dssp EECCSSE
T ss_pred EECcCCc
Confidence 8888773
No 10
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.88 E-value=2.1e-22 Score=149.55 Aligned_cols=157 Identities=20% Similarity=0.144 Sum_probs=81.2
Q ss_pred cccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCC------------
Q 038633 11 LHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGF------------ 78 (176)
Q Consensus 11 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~------------ 78 (176)
+..+++|+.|++++|.+. ..+..+..+.+|++|++++|.++ .+|..+..+++|++|++++|.+.+.
T Consensus 100 l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~ 177 (328)
T 4fcg_A 100 AFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASG 177 (328)
T ss_dssp GGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CC
T ss_pred hhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchh
Confidence 334555666666665555 34444555555555666555554 4455555555555555555444332
Q ss_pred -------------------cchhhhcCcCCccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCC
Q 038633 79 -------------------KVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPS 139 (176)
Q Consensus 79 -------------------~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~ 139 (176)
.+|..+..+++|++|++++|++. .+|..++.+++|+.|++++|.+ ....+..+..+++
T Consensus 178 ~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~--~~~~p~~~~~l~~ 254 (328)
T 4fcg_A 178 EHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTA--LRNYPPIFGGRAP 254 (328)
T ss_dssp CEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTT--CCBCCCCTTCCCC
T ss_pred hhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcc--hhhhHHHhcCCCC
Confidence 23444444445555555555544 3344444555555555555444 2222333555556
Q ss_pred ccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCC
Q 038633 140 LKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNC 175 (176)
Q Consensus 140 L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n 175 (176)
|++|++++|.+.+..|. .++.+++|++|++++|
T Consensus 255 L~~L~L~~n~~~~~~p~---~~~~l~~L~~L~L~~n 287 (328)
T 4fcg_A 255 LKRLILKDCSNLLTLPL---DIHRLTQLEKLDLRGC 287 (328)
T ss_dssp CCEEECTTCTTCCBCCT---TGGGCTTCCEEECTTC
T ss_pred CCEEECCCCCchhhcch---hhhcCCCCCEEeCCCC
Confidence 66666666555555554 4555666666666655
No 11
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.88 E-value=2.2e-21 Score=136.53 Aligned_cols=150 Identities=19% Similarity=0.104 Sum_probs=100.6
Q ss_pred ceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeec
Q 038633 18 FALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSG 97 (176)
Q Consensus 18 ~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~ 97 (176)
+.++.+++.+....... ...++.|++++|.+++..+..|..+++|++|++++|.+... .|..+..+++|++|++++
T Consensus 14 ~~v~c~~~~l~~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL-APDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTSCCSSCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEE-CTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCCCcCcCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCc-CHHHhhCCcCCCEEECCC
Confidence 45666665554432211 25677777777777766666777777777777777777755 566777777777777777
Q ss_pred ccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCCC
Q 038633 98 SFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN 176 (176)
Q Consensus 98 ~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n~ 176 (176)
|++....+..+..+++|+.|++++|.++ ......+..+++|++|++++|.+.+.++. .+..+++|+.|++++|.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKIN--CLRVDAFQDLHNLNLLSLYDNKLQTIAKG---TFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCSCCCTT---TTTTCTTCCEEECCSSC
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCC--EeCHHHcCCCCCCCEEECCCCcCCEECHH---HHhCCCCCCEEEeCCCC
Confidence 7776333344567777777777777773 23334467777777777777777766654 56667777777777763
No 12
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=1.5e-21 Score=142.68 Aligned_cols=131 Identities=23% Similarity=0.122 Sum_probs=60.1
Q ss_pred cCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCCCCE
Q 038633 37 RDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLY 116 (176)
Q Consensus 37 ~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~ 116 (176)
.+.+|++|++++|.++ .+|..+..+++|++|++++|.+... .|..+..+++|++|++++|++....+..+..+++|+.
T Consensus 75 ~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 152 (290)
T 1p9a_G 75 TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSL-PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152 (290)
T ss_dssp CCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCC-CSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred CCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCccc-CHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCE
Confidence 3344444444444443 3344444455555555555555432 3334444555555555555554332333444555555
Q ss_pred EEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCC
Q 038633 117 LDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNC 175 (176)
Q Consensus 117 L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n 175 (176)
|++++|+++. .....+..+++|++|++++|.+...+. .+...+.|+.+++++|
T Consensus 153 L~L~~N~l~~--l~~~~~~~l~~L~~L~L~~N~l~~ip~----~~~~~~~L~~l~L~~N 205 (290)
T 1p9a_G 153 LSLANNNLTE--LPAGLLNGLENLDTLLLQENSLYTIPK----GFFGSHLLPFAFLHGN 205 (290)
T ss_dssp EECTTSCCSC--CCTTTTTTCTTCCEEECCSSCCCCCCT----TTTTTCCCSEEECCSC
T ss_pred EECCCCcCCc--cCHHHhcCcCCCCEEECCCCcCCccCh----hhcccccCCeEEeCCC
Confidence 5555555422 222224445555555555555543322 3333445555555554
No 13
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.87 E-value=6.9e-22 Score=146.78 Aligned_cols=158 Identities=18% Similarity=0.119 Sum_probs=135.0
Q ss_pred ccccccccceeeccCccccCCCCcCccc---------CCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcc
Q 038633 10 DLHLLSRIFALSLLRCCSVGSALAQPFR---------DSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKV 80 (176)
Q Consensus 10 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~---------~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 80 (176)
.+..+++|+.|++++|.+.+..+..... +.+|++|++++|.++ .+|..+..+++|++|++++|.+. .+
T Consensus 145 ~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~--~l 221 (328)
T 4fcg_A 145 SIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS--AL 221 (328)
T ss_dssp GGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC--CC
T ss_pred HHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC--cC
Confidence 4566777888888887777666655443 788888999988887 78888999999999999999999 47
Q ss_pred hhhhcCcCCccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHH
Q 038633 81 PEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLES 160 (176)
Q Consensus 81 p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 160 (176)
|..+..+++|++|++++|.+.+..|..++.+++|+.|++++|.+ ....+..+..+++|++|++++|.+.+..|. .
T Consensus 222 ~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~--~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~---~ 296 (328)
T 4fcg_A 222 GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSN--LLTLPLDIHRLTQLEKLDLRGCVNLSRLPS---L 296 (328)
T ss_dssp CGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTT--CCBCCTTGGGCTTCCEEECTTCTTCCCCCG---G
T ss_pred chhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCc--hhhcchhhhcCCCCCEEeCCCCCchhhccH---H
Confidence 77899999999999999999889999999999999999999987 334445588999999999999999998887 8
Q ss_pred hhccccCcEeeCcCC
Q 038633 161 ISMLRSLVELRLPNC 175 (176)
Q Consensus 161 l~~~~~L~~L~l~~n 175 (176)
++.+++|+.+++..+
T Consensus 297 l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 297 IAQLPANCIILVPPH 311 (328)
T ss_dssp GGGSCTTCEEECCGG
T ss_pred HhhccCceEEeCCHH
Confidence 899999999988754
No 14
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.87 E-value=8.8e-22 Score=144.63 Aligned_cols=161 Identities=17% Similarity=0.147 Sum_probs=128.3
Q ss_pred cccccccceeeccCccccCCCC-cCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCC
Q 038633 11 LHLLSRIFALSLLRCCSVGSAL-AQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKE 89 (176)
Q Consensus 11 ~~~~~~l~~l~l~~~~~~~~~~-~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~ 89 (176)
+..+++|+.|++++|.+.+... ..+..+.+|++|++++|.+++..+..+..+++|++|++++|.+.....|..+..+++
T Consensus 97 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 176 (306)
T 2z66_A 97 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN 176 (306)
T ss_dssp EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcC
Confidence 5567788888888888776554 456777888899999998888888888888999999999998875216777888889
Q ss_pred ccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccc-cCc
Q 038633 90 LRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLR-SLV 168 (176)
Q Consensus 90 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~-~L~ 168 (176)
|++|++++|++.+..|..+..+++|+.|++++|.+.. .....+..+++|++|++++|.+.+.++. .+..++ +|+
T Consensus 177 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~~~~~L~ 251 (306)
T 2z66_A 177 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFS--LDTFPYKCLNSLQVLDYSLNHIMTSKKQ---ELQHFPSSLA 251 (306)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSB--CCSGGGTTCTTCCEEECTTSCCCBCSSS---SCCCCCTTCC
T ss_pred CCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCc--cChhhccCcccCCEeECCCCCCcccCHH---HHHhhhccCC
Confidence 9999999999885557778888999999999998843 3333477888999999999999887765 666674 899
Q ss_pred EeeCcCCC
Q 038633 169 ELRLPNCN 176 (176)
Q Consensus 169 ~L~l~~n~ 176 (176)
.|++++|.
T Consensus 252 ~L~L~~N~ 259 (306)
T 2z66_A 252 FLNLTQND 259 (306)
T ss_dssp EEECTTCC
T ss_pred EEEccCCC
Confidence 99998884
No 15
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=4e-21 Score=137.56 Aligned_cols=153 Identities=20% Similarity=0.151 Sum_probs=130.8
Q ss_pred cccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEE
Q 038633 15 SRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLN 94 (176)
Q Consensus 15 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~ 94 (176)
...+.++++++.+.......+ ..++.|++++|.+++..+..|..+++|++|++++|.+... .+..+..+++|++|+
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP---ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL-SAGVFDDLTELGTLG 89 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC---TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEE
T ss_pred CCCeEEecCCCCccccCCCCC---CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCcc-CHhHhccCCcCCEEE
Confidence 467789999887765443222 5789999999999988888999999999999999999976 777789999999999
Q ss_pred eecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcC
Q 038633 95 LSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPN 174 (176)
Q Consensus 95 l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~ 174 (176)
+++|++.+..+..++.+++|+.|++++|.++ ......+..+++|++|++++|.+.+.++. .++.+++|++|++++
T Consensus 90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~L~~ 164 (251)
T 3m19_A 90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLK--SLPSGVFDRLTKLKELRLNTNQLQSIPAG---AFDKLTNLQTLSLST 164 (251)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCCEEECCS
T ss_pred CCCCcccccChhHhcccCCCCEEEcCCCcCC--CcChhHhccCCcccEEECcCCcCCccCHH---HcCcCcCCCEEECCC
Confidence 9999998666677889999999999999984 33344578899999999999999988775 678899999999999
Q ss_pred CC
Q 038633 175 CN 176 (176)
Q Consensus 175 n~ 176 (176)
|+
T Consensus 165 N~ 166 (251)
T 3m19_A 165 NQ 166 (251)
T ss_dssp SC
T ss_pred Cc
Confidence 84
No 16
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.87 E-value=1.2e-21 Score=159.84 Aligned_cols=156 Identities=26% Similarity=0.231 Sum_probs=116.1
Q ss_pred ccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEE
Q 038633 14 LSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYL 93 (176)
Q Consensus 14 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L 93 (176)
+++++.|++++|.+.+..+..+..+.+|++|++++|.+++..|..+..+++|++|++++|.+.+. +|..+..+++|++|
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L 471 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE-IPQELMYVKTLETL 471 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSC-CCGGGGGCTTCCEE
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCc-CCHHHcCCCCceEE
Confidence 45677777777777666666667777777777777777777777777777777777777777765 77777777778888
Q ss_pred EeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCc
Q 038633 94 NLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLP 173 (176)
Q Consensus 94 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~ 173 (176)
++++|++.+..|..++.+++|+.|++++|++ ....+..+..+++|++|++++|.+.+..|. .++.+++|+.|+++
T Consensus 472 ~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l--~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~---~l~~l~~L~~L~Ls 546 (768)
T 3rgz_A 472 ILDFNDLTGEIPSGLSNCTNLNWISLSNNRL--TGEIPKWIGRLENLAILKLSNNSFSGNIPA---ELGDCRSLIWLDLN 546 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCC--CSCCCGGGGGCTTCCEEECCSSCCEEECCG---GGGGCTTCCEEECC
T ss_pred EecCCcccCcCCHHHhcCCCCCEEEccCCcc--CCcCChHHhcCCCCCEEECCCCcccCcCCH---HHcCCCCCCEEECC
Confidence 8888877777777777777888888888777 333344567777888888888887776665 67777888888887
Q ss_pred CC
Q 038633 174 NC 175 (176)
Q Consensus 174 ~n 175 (176)
+|
T Consensus 547 ~N 548 (768)
T 3rgz_A 547 TN 548 (768)
T ss_dssp SS
T ss_pred CC
Confidence 76
No 17
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.87 E-value=2.3e-21 Score=150.27 Aligned_cols=156 Identities=20% Similarity=0.102 Sum_probs=130.7
Q ss_pred ccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEE
Q 038633 14 LSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYL 93 (176)
Q Consensus 14 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L 93 (176)
.+.++.|++++|.+.+..+..+..+.+|++|++++|.+++..|..|.++++|++|++++|.+... .+..+..+++|++|
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L 109 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLI-PLGVFTGLSNLTKL 109 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSC-CTTSSTTCTTCCEE
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCcc-CcccccCCCCCCEE
Confidence 46789999999999888777888899999999999999888888999999999999999998854 44567889999999
Q ss_pred EeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCc
Q 038633 94 NLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLP 173 (176)
Q Consensus 94 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~ 173 (176)
++++|++....+..+..+++|+.|++++|.+. ......+..+++|++|++++|.+.+.++. .+..+++|+.|+++
T Consensus 110 ~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~l~~l~~L~~L~l~ 184 (477)
T 2id5_A 110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLV--YISHRAFSGLNSLEQLTLEKCNLTSIPTE---ALSHLHGLIVLRLR 184 (477)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEEECCTTCC--EECTTSSTTCTTCCEEEEESCCCSSCCHH---HHTTCTTCCEEEEE
T ss_pred ECCCCccccCChhHccccccCCEEECCCCccc--eeChhhccCCCCCCEEECCCCcCcccChh---HhcccCCCcEEeCC
Confidence 99999998666777888999999999999883 33344578888999999999998877664 67778888888887
Q ss_pred CC
Q 038633 174 NC 175 (176)
Q Consensus 174 ~n 175 (176)
+|
T Consensus 185 ~n 186 (477)
T 2id5_A 185 HL 186 (477)
T ss_dssp SC
T ss_pred CC
Confidence 76
No 18
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.86 E-value=6.9e-21 Score=139.18 Aligned_cols=154 Identities=23% Similarity=0.128 Sum_probs=134.0
Q ss_pred ccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEE
Q 038633 14 LSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYL 93 (176)
Q Consensus 14 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L 93 (176)
.++++.|++++|.+.+..+..+..+.+|++|++++|.+++..+. ..+++|++|++++|.+. .+|..+..+++|++|
T Consensus 30 ~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls~N~l~--~l~~~~~~l~~L~~L 105 (290)
T 1p9a_G 30 PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQ--SLPLLGQTLPALTVL 105 (290)
T ss_dssp CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECCSSCCS--SCCCCTTTCTTCCEE
T ss_pred CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECCCCcCC--cCchhhccCCCCCEE
Confidence 47899999999999887777889999999999999999764332 78999999999999998 588888899999999
Q ss_pred EeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCc
Q 038633 94 NLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLP 173 (176)
Q Consensus 94 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~ 173 (176)
++++|++....+..+..+++|+.|++++|.++. .....+..+++|+.|++++|++...++. .+..+++|+.|+++
T Consensus 106 ~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~~l~~~---~~~~l~~L~~L~L~ 180 (290)
T 1p9a_G 106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKT--LPPGLLTPTPKLEKLSLANNNLTELPAG---LLNGLENLDTLLLQ 180 (290)
T ss_dssp ECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC--CCTTTTTTCTTCCEEECTTSCCSCCCTT---TTTTCTTCCEEECC
T ss_pred ECCCCcCcccCHHHHcCCCCCCEEECCCCCCCc--cChhhcccccCCCEEECCCCcCCccCHH---HhcCcCCCCEEECC
Confidence 999999985556779999999999999999953 3445578899999999999999977765 67789999999999
Q ss_pred CCC
Q 038633 174 NCN 176 (176)
Q Consensus 174 ~n~ 176 (176)
+|+
T Consensus 181 ~N~ 183 (290)
T 1p9a_G 181 ENS 183 (290)
T ss_dssp SSC
T ss_pred CCc
Confidence 984
No 19
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.86 E-value=5.2e-21 Score=138.66 Aligned_cols=160 Identities=18% Similarity=0.039 Sum_probs=123.2
Q ss_pred ccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEE
Q 038633 14 LSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYL 93 (176)
Q Consensus 14 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L 93 (176)
.++++.|++++|.+.+..+..+..+.+|++|++++|.+++..+..+..+++|++|++++|.+... .+..+..+++|++|
T Consensus 27 ~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L 105 (276)
T 2z62_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKL 105 (276)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEE
T ss_pred CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCcc-ChhhhcCCccccEE
Confidence 35689999999988877666778888999999999999877777888999999999999998865 66778889999999
Q ss_pred EeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCc-EeeC
Q 038633 94 NLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLV-ELRL 172 (176)
Q Consensus 94 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~-~L~l 172 (176)
++++|.+....+..++.+++|+.|++++|.++.. ..+..+..+++|++|++++|.+.+.++..+..+..++.+. .|++
T Consensus 106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~l 184 (276)
T 2z62_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSF-KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184 (276)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC-CCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEEC
T ss_pred ECCCCCccccCchhcccCCCCCEEECcCCcccee-cCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeec
Confidence 9999998755555688889999999999988432 1234577888999999999998877665333333333222 5566
Q ss_pred cCC
Q 038633 173 PNC 175 (176)
Q Consensus 173 ~~n 175 (176)
++|
T Consensus 185 s~n 187 (276)
T 2z62_A 185 SLN 187 (276)
T ss_dssp CSS
T ss_pred CCC
Confidence 555
No 20
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.86 E-value=3.7e-21 Score=144.55 Aligned_cols=157 Identities=20% Similarity=0.111 Sum_probs=125.6
Q ss_pred ccccceeeccCccccCCCCcCcc-cCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccE
Q 038633 14 LSRIFALSLLRCCSVGSALAQPF-RDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRY 92 (176)
Q Consensus 14 ~~~l~~l~l~~~~~~~~~~~~~~-~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~ 92 (176)
.+.++.|++++|.+.+..+..+. .+.+|++|++++|.+++..+..|..+++|++|++++|.+... .+..+..+++|++
T Consensus 38 ~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~ 116 (361)
T 2xot_A 38 PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL-DEFLFSDLQALEV 116 (361)
T ss_dssp CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCE
T ss_pred CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcC-CHHHhCCCcCCCE
Confidence 45688899999988877666666 888999999999999887778899999999999999998855 5567888999999
Q ss_pred EEeecccCCCCcchhccCCCCCCEEEccCCccCccccccccc---CCCCCccEEeccCCCCCCchhhhHHHhhcccc--C
Q 038633 93 LNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWL---SGLPSLKYLNLGGADLSKDAAYWLESISMLRS--L 167 (176)
Q Consensus 93 L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~--L 167 (176)
|++++|++....|..+..+++|+.|++++|.++..+. ..+ ..+++|++|+|++|.+...++. .+..++. +
T Consensus 117 L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~--~~~~~~~~l~~L~~L~L~~N~l~~l~~~---~~~~l~~~~l 191 (361)
T 2xot_A 117 LLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV--ELIKDGNKLPKLMLLDLSSNKLKKLPLT---DLQKLPAWVK 191 (361)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCG--GGTC----CTTCCEEECCSSCCCCCCHH---HHHHSCHHHH
T ss_pred EECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCH--HHhcCcccCCcCCEEECCCCCCCccCHH---HhhhccHhhc
Confidence 9999999986667788899999999999998854332 223 5688999999999999877765 5666665 4
Q ss_pred cEeeCcCCC
Q 038633 168 VELRLPNCN 176 (176)
Q Consensus 168 ~~L~l~~n~ 176 (176)
+.|++++|.
T Consensus 192 ~~l~l~~N~ 200 (361)
T 2xot_A 192 NGLYLHNNP 200 (361)
T ss_dssp TTEECCSSC
T ss_pred ceEEecCCC
Confidence 788888874
No 21
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.86 E-value=7.7e-21 Score=146.63 Aligned_cols=86 Identities=15% Similarity=-0.053 Sum_probs=47.5
Q ss_pred cccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEE
Q 038633 15 SRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLN 94 (176)
Q Consensus 15 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~ 94 (176)
++++.|++++|.+.+..+..+..+.+|++|++++|.+++..+..|.++++|++|++++|.+... .+..+..+++|++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVI-PSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBC-CTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCcc-ChhhhcccCCCCEEE
Confidence 4555666666655555555555555556666666555555555555555555555555555533 333445555555555
Q ss_pred eecccCC
Q 038633 95 LSGSFFS 101 (176)
Q Consensus 95 l~~~~~~ 101 (176)
+++|++.
T Consensus 154 L~~N~l~ 160 (452)
T 3zyi_A 154 LRNNPIE 160 (452)
T ss_dssp CCSCCCC
T ss_pred CCCCCcc
Confidence 5555554
No 22
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.86 E-value=1.8e-20 Score=131.86 Aligned_cols=159 Identities=14% Similarity=0.061 Sum_probs=114.5
Q ss_pred ccccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccch-hhhcCCCCCcEEEccCccccCCcchhhhcC
Q 038633 8 LSDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPIS-PSLLQLKDLKYLDLSMNNFKGFKVPEFIGS 86 (176)
Q Consensus 8 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~ 86 (176)
+++...|.. +.++++++.+.+. |... ...+++|++++|.+++..+ ..|..+++|++|++++|.+... .+..+..
T Consensus 5 CP~~C~C~~-~~l~~s~n~l~~i-P~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i-~~~~~~~ 79 (220)
T 2v70_A 5 CPEKCRCEG-TTVDCSNQKLNKI-PEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDI-EEGAFEG 79 (220)
T ss_dssp CCTTCEEET-TEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEE-CTTTTTT
T ss_pred CCCCCEECC-CEeEeCCCCcccC-ccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEE-CHHHhCC
Confidence 343334433 4778887777653 3222 2345788888888876644 4477888888888888888855 5557888
Q ss_pred cCCccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhcccc
Q 038633 87 LKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRS 166 (176)
Q Consensus 87 l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~ 166 (176)
+++|++|++++|++.+..+..+..+++|+.|++++|.++ ...+..+..+++|++|++++|.+.+.++. .+..+++
T Consensus 80 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~ 154 (220)
T 2v70_A 80 ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT--CVGNDSFIGLSSVRLLSLYDNQITTVAPG---AFDTLHS 154 (220)
T ss_dssp CTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCC--CBCTTSSTTCTTCSEEECTTSCCCCBCTT---TTTTCTT
T ss_pred CCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCC--eECHhHcCCCccCCEEECCCCcCCEECHH---HhcCCCC
Confidence 888888888888887565666788888888888888874 33334577888888888888888877665 6777888
Q ss_pred CcEeeCcCCC
Q 038633 167 LVELRLPNCN 176 (176)
Q Consensus 167 L~~L~l~~n~ 176 (176)
|+.|++++|.
T Consensus 155 L~~L~L~~N~ 164 (220)
T 2v70_A 155 LSTLNLLANP 164 (220)
T ss_dssp CCEEECCSCC
T ss_pred CCEEEecCcC
Confidence 8888888874
No 23
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.86 E-value=1.7e-20 Score=132.72 Aligned_cols=136 Identities=20% Similarity=0.090 Sum_probs=87.0
Q ss_pred ccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEE
Q 038633 14 LSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYL 93 (176)
Q Consensus 14 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L 93 (176)
.++++.|++++|.+.+..+..+..+.+|++|++++|.++...+..|..+++|++|++++|.+... .+..+..+++|++|
T Consensus 39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~~l~~L~~L 117 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL-PSAVFDRLVHLKEL 117 (229)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEE
T ss_pred CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCcc-ChhHhCcchhhCeE
Confidence 35566777777776666555666666777777777776554445566677777777777776643 44445666777777
Q ss_pred EeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCc
Q 038633 94 NLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKD 153 (176)
Q Consensus 94 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 153 (176)
++++|++. .+|..+..+++|+.|++++|.++. .....+..+++|+.|++++|.+...
T Consensus 118 ~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 118 FMCCNKLT-ELPRGIERLTHLTHLALDQNQLKS--IPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp ECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCC--CCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred eccCCccc-ccCcccccCCCCCEEECCCCcCCc--cCHHHHhCCCCCCEEEeeCCCccCC
Confidence 77777766 566666666777777777776632 2223456666777777777766543
No 24
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.86 E-value=6.8e-21 Score=146.47 Aligned_cols=84 Identities=13% Similarity=-0.064 Sum_probs=36.0
Q ss_pred ccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEe
Q 038633 16 RIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNL 95 (176)
Q Consensus 16 ~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l 95 (176)
+++.|++++|.+....+..+..+.+|++|++++|.+++..+..|.++++|++|++++|.+... .+..+..+++|++|++
T Consensus 65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTI-PNGAFVYLSKLKELWL 143 (440)
T ss_dssp TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSC-CTTTSCSCSSCCEEEC
T ss_pred CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCee-CHhHhhccccCceeeC
Confidence 344444444444443333444444444444444444443344444444444444444444422 2223334444444444
Q ss_pred ecccC
Q 038633 96 SGSFF 100 (176)
Q Consensus 96 ~~~~~ 100 (176)
++|++
T Consensus 144 ~~N~i 148 (440)
T 3zyj_A 144 RNNPI 148 (440)
T ss_dssp CSCCC
T ss_pred CCCcc
Confidence 44443
No 25
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.86 E-value=9e-21 Score=150.76 Aligned_cols=160 Identities=16% Similarity=0.020 Sum_probs=131.5
Q ss_pred ccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEE
Q 038633 14 LSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYL 93 (176)
Q Consensus 14 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L 93 (176)
.++++.|++++|.+.+..+..+..+.+|++|++++|.+++..|..|.++++|++|++++|.+... .|..+..+++|++|
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L 109 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSF-SPGSFSGLTSLENL 109 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCC-CTTSSTTCTTCCEE
T ss_pred CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCccccc-ChhhcCCcccCCEE
Confidence 47899999999999888777888999999999999999888888999999999999999999976 78889999999999
Q ss_pred EeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhcccc-CcEeeC
Q 038633 94 NLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRS-LVELRL 172 (176)
Q Consensus 94 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~-L~~L~l 172 (176)
++++|++.+..+..++.+++|++|++++|.+... ..+..+..+++|++|++++|.+.+.++..++.+..++. +..|++
T Consensus 110 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l 188 (606)
T 3vq2_A 110 VAVETKLASLESFPIGQLITLKKLNVAHNFIHSC-KLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDM 188 (606)
T ss_dssp ECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCC-CCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEEC
T ss_pred EccCCccccccccccCCCCCCCEEeCCCCcccce-echHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeec
Confidence 9999999855557789999999999999988421 22445889999999999999998877663333333332 346777
Q ss_pred cCC
Q 038633 173 PNC 175 (176)
Q Consensus 173 ~~n 175 (176)
++|
T Consensus 189 ~~n 191 (606)
T 3vq2_A 189 SLN 191 (606)
T ss_dssp TTC
T ss_pred cCC
Confidence 665
No 26
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.85 E-value=8.7e-21 Score=150.95 Aligned_cols=159 Identities=18% Similarity=0.045 Sum_probs=120.9
Q ss_pred cccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEE
Q 038633 15 SRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLN 94 (176)
Q Consensus 15 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~ 94 (176)
.+++.|++++|.|.+..+..+..+++|++|++++|.+++..+.+|.++++|++|++++|.+... .+..+..+++|++|+
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l-~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE-CGGGGTTCTTCCEEE
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCC-CHHHhcCCCCCCEEE
Confidence 5788999999988887777888889999999999998877778888999999999999988854 456678889999999
Q ss_pred eecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccc-cCcEeeCc
Q 038633 95 LSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLR-SLVELRLP 173 (176)
Q Consensus 95 l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~-~L~~L~l~ 173 (176)
+++|++.+..+..++.+++|++|++++|.++... .+..+..+++|++|++++|.+.+..+..+..+..++ ....++++
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls 209 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFK-LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 209 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCC-CCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccCccccCC-CchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcc
Confidence 9999987554556888899999999998874322 233467788899999999998877665333333332 22245554
Q ss_pred CC
Q 038633 174 NC 175 (176)
Q Consensus 174 ~n 175 (176)
.|
T Consensus 210 ~n 211 (635)
T 4g8a_A 210 LN 211 (635)
T ss_dssp TC
T ss_pred cC
Confidence 43
No 27
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.85 E-value=6e-21 Score=138.30 Aligned_cols=164 Identities=23% Similarity=0.122 Sum_probs=128.4
Q ss_pred cccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcC
Q 038633 9 SDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLK 88 (176)
Q Consensus 9 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~ 88 (176)
..+..+++++.|++++|.+.+..+..+..+.+|++|++++|.+++..+..+..+++|++|++++|.+... .+..+..++
T Consensus 46 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~ 124 (276)
T 2z62_A 46 YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLK 124 (276)
T ss_dssp TTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCS-TTCCCTTCT
T ss_pred hHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCcccc-CchhcccCC
Confidence 3566788999999999988877666778888999999999999887778888999999999999988865 555678888
Q ss_pred CccEEEeecccCCCC-cchhccCCCCCCEEEccCCccCcccc-c------------------------ccccCCCCCccE
Q 038633 89 ELRYLNLSGSFFSGT-IPQSLGNLTNLLYLDLNNFLDQSNQI-G------------------------LGWLSGLPSLKY 142 (176)
Q Consensus 89 ~L~~L~l~~~~~~~~-~p~~~~~l~~L~~L~l~~n~~~~~~~-~------------------------~~~~~~l~~L~~ 142 (176)
+|++|++++|++... +|..++.+++|+.|++++|+++.... . ........+|++
T Consensus 125 ~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~ 204 (276)
T 2z62_A 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKE 204 (276)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEE
T ss_pred CCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccE
Confidence 999999999988743 57888888899999998887732110 0 011122337889
Q ss_pred EeccCCCCCCchhhhHHHhhccccCcEeeCcCCC
Q 038633 143 LNLGGADLSKDAAYWLESISMLRSLVELRLPNCN 176 (176)
Q Consensus 143 L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n~ 176 (176)
|++++|.+.+.++. .++.+++|+.|++++|.
T Consensus 205 L~L~~n~l~~~~~~---~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 205 LALDTNQLKSVPDG---IFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp EECCSSCCSCCCTT---TTTTCCSCCEEECCSSC
T ss_pred EECCCCceeecCHh---HhcccccccEEEccCCc
Confidence 99999998877664 66788999999999874
No 28
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.85 E-value=1.9e-20 Score=135.54 Aligned_cols=158 Identities=22% Similarity=0.179 Sum_probs=133.7
Q ss_pred cccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcC
Q 038633 9 SDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLK 88 (176)
Q Consensus 9 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~ 88 (176)
.....+++++.|++.+|.+... .....+++|++|++++|.+++. ..+..+++|++|++++|.+... .+..+..++
T Consensus 35 ~~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~ 109 (272)
T 3rfs_A 35 VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSL-PNGVFDKLT 109 (272)
T ss_dssp ECHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCC-CTTTTTTCT
T ss_pred cccccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCcc-ChhHhcCCc
Confidence 3455678899999999987653 3467789999999999999763 4788999999999999999965 666788999
Q ss_pred CccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCc
Q 038633 89 ELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLV 168 (176)
Q Consensus 89 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~ 168 (176)
+|++|++++|++.+..+..++.+++|++|++++|.++ ......+..+++|++|++++|.+.+.++. .++.+++|+
T Consensus 110 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~ 184 (272)
T 3rfs_A 110 NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ--SLPKGVFDKLTNLTELDLSYNQLQSLPEG---VFDKLTQLK 184 (272)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCCCCCTT---TTTTCTTCC
T ss_pred CCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccC--ccCHHHhccCccCCEEECCCCCcCccCHH---HhcCCccCC
Confidence 9999999999998666666889999999999999984 33344578999999999999999987775 678899999
Q ss_pred EeeCcCCC
Q 038633 169 ELRLPNCN 176 (176)
Q Consensus 169 ~L~l~~n~ 176 (176)
+|++++|+
T Consensus 185 ~L~L~~N~ 192 (272)
T 3rfs_A 185 DLRLYQNQ 192 (272)
T ss_dssp EEECCSSC
T ss_pred EEECCCCc
Confidence 99999984
No 29
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.85 E-value=1.1e-20 Score=150.21 Aligned_cols=157 Identities=17% Similarity=-0.034 Sum_probs=136.4
Q ss_pred ccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEE
Q 038633 14 LSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYL 93 (176)
Q Consensus 14 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L 93 (176)
.+.++.|++++|.+.+..+..+..+.+|++|++++|.+++..|..|.++++|++|++++|.+... .|..+..+++|++|
T Consensus 32 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L 110 (606)
T 3t6q_A 32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFM-AETALSGPKALKHL 110 (606)
T ss_dssp CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEE-CTTTTSSCTTCCEE
T ss_pred CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCccccc-ChhhhcccccccEe
Confidence 46799999999999988888899999999999999999988899999999999999999999976 78899999999999
Q ss_pred EeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCc--Eee
Q 038633 94 NLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLV--ELR 171 (176)
Q Consensus 94 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~--~L~ 171 (176)
++++|++.+..+..++.+++|++|++++|.+... ....+..+++|++|++++|.+.+.++. .++.+++|+ .|+
T Consensus 111 ~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~l~L~ 185 (606)
T 3t6q_A 111 FFIQTGISSIDFIPLHNQKTLESLYLGSNHISSI--KLPKGFPTEKLKVLDFQNNAIHYLSKE---DMSSLQQATNLSLN 185 (606)
T ss_dssp ECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCC--CCCTTCCCTTCCEEECCSSCCCEECHH---HHHTTTTCCSEEEE
T ss_pred eccccCcccCCcchhccCCcccEEECCCCccccc--CcccccCCcccCEEEcccCcccccChh---hhhhhcccceeEEe
Confidence 9999999865577889999999999999998532 222355699999999999999877775 677788888 888
Q ss_pred CcCCC
Q 038633 172 LPNCN 176 (176)
Q Consensus 172 l~~n~ 176 (176)
+++|+
T Consensus 186 l~~n~ 190 (606)
T 3t6q_A 186 LNGND 190 (606)
T ss_dssp CTTCC
T ss_pred cCCCc
Confidence 88874
No 30
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.85 E-value=1.4e-20 Score=144.98 Aligned_cols=131 Identities=24% Similarity=0.212 Sum_probs=99.3
Q ss_pred cceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCCCCEEEc
Q 038633 40 FDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDL 119 (176)
Q Consensus 40 ~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l 119 (176)
.+++|++++|.+++..|..+..+++|++|++++|.+... .|..+..+++|++|++++|++.+..|..++.+++|+.|++
T Consensus 276 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 276 GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKI-DDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp CCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred CceEEEecCccccccchhhcccCCCCCEEECCCCccccc-ChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence 455555556666555666777788888888888888865 6677888888888888888887555677788888888888
Q ss_pred cCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCCC
Q 038633 120 NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN 176 (176)
Q Consensus 120 ~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n~ 176 (176)
++|.+. ...+..+..+++|++|++++|.+.+.++. .++.+++|+.|++++|+
T Consensus 355 s~N~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 355 SYNHIR--ALGDQSFLGLPNLKELALDTNQLKSVPDG---IFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp CSSCCC--EECTTTTTTCTTCCEEECCSSCCSCCCTT---TTTTCTTCCEEECCSSC
T ss_pred CCCccc--ccChhhccccccccEEECCCCccccCCHh---HhccCCcccEEEccCCC
Confidence 888873 33344577888888888888888877664 56778888888888874
No 31
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.85 E-value=2e-20 Score=143.90 Aligned_cols=39 Identities=23% Similarity=0.231 Sum_probs=20.7
Q ss_pred cCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCC
Q 038633 134 LSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNC 175 (176)
Q Consensus 134 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n 175 (176)
+..+++|++|+|++|.+.+.++. .+..+++|+.|++++|
T Consensus 251 ~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 251 FDNLQSLVEINLAHNNLTLLPHD---LFTPLHHLERIHLHHN 289 (440)
T ss_dssp STTCTTCCEEECTTSCCCCCCTT---TTSSCTTCCEEECCSS
T ss_pred hcCCCCCCEEECCCCCCCccChh---HhccccCCCEEEcCCC
Confidence 44555555555555555544443 4445555555555555
No 32
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.85 E-value=1.6e-20 Score=144.88 Aligned_cols=161 Identities=20% Similarity=0.075 Sum_probs=137.3
Q ss_pred ccccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCc
Q 038633 8 LSDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSL 87 (176)
Q Consensus 8 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l 87 (176)
...+..+++|+.|++++|.+.+..+..+..+.+|++|++++|.++...+..|..+++|++|++++|.+... .+..+..+
T Consensus 92 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l 170 (452)
T 3zyi_A 92 ADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESI-PSYAFNRV 170 (452)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEE-CTTTTTTC
T ss_pred HHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCccee-CHhHHhcC
Confidence 45677889999999999999888778888999999999999999877777789999999999999999954 55678899
Q ss_pred CCccEEEeecccCCCCcch-hccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhcccc
Q 038633 88 KELRYLNLSGSFFSGTIPQ-SLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRS 166 (176)
Q Consensus 88 ~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~ 166 (176)
++|++|++++|...+.++. .+..+++|+.|++++|.++..+ .+..+++|++|++++|.+.+.++. .+..+++
T Consensus 171 ~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~l~~L~~L~Ls~N~l~~~~~~---~~~~l~~ 243 (452)
T 3zyi_A 171 PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP----NLTPLVGLEELEMSGNHFPEIRPG---SFHGLSS 243 (452)
T ss_dssp TTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC----CCTTCTTCCEEECTTSCCSEECGG---GGTTCTT
T ss_pred CcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc----cccccccccEEECcCCcCcccCcc---cccCccC
Confidence 9999999998554445554 5888999999999999985443 378899999999999999988776 7888999
Q ss_pred CcEeeCcCCC
Q 038633 167 LVELRLPNCN 176 (176)
Q Consensus 167 L~~L~l~~n~ 176 (176)
|+.|++++|+
T Consensus 244 L~~L~L~~n~ 253 (452)
T 3zyi_A 244 LKKLWVMNSQ 253 (452)
T ss_dssp CCEEECTTSC
T ss_pred CCEEEeCCCc
Confidence 9999999884
No 33
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.85 E-value=5.4e-21 Score=143.11 Aligned_cols=154 Identities=21% Similarity=0.191 Sum_probs=93.3
Q ss_pred cccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEE
Q 038633 15 SRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLN 94 (176)
Q Consensus 15 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~ 94 (176)
++++.|++++|.+.+..+..+..+.+|++|++++|.+++..+..|.++++|++|++++|.+... .+..+..+++|++|+
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL-SSSWFKPLSSLTFLN 130 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSC-CHHHHTTCTTCSEEE
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcC-CHhHhCCCccCCEEE
Confidence 4677777777776665555566667777777777777666666677777777777777777643 334466677777777
Q ss_pred eecccCCCCcch--hccCCCCCCEEEccCCc-cCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEee
Q 038633 95 LSGSFFSGTIPQ--SLGNLTNLLYLDLNNFL-DQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELR 171 (176)
Q Consensus 95 l~~~~~~~~~p~--~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~ 171 (176)
+++|++. .+|. .+..+++|+.|++++|. +. ......+..+++|++|++++|.+.+..+. .++.+++|++|+
T Consensus 131 L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~l~~l~~L~~L~ 204 (353)
T 2z80_A 131 LLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFT--KIQRKDFAGLTFLEELEIDASDLQSYEPK---SLKSIQNVSHLI 204 (353)
T ss_dssp CTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCC--EECTTTTTTCCEEEEEEEEETTCCEECTT---TTTTCSEEEEEE
T ss_pred CCCCCCc-ccCchhhhccCCCCcEEECCCCcccc--ccCHHHccCCCCCCEEECCCCCcCccCHH---HHhccccCCeec
Confidence 7777766 4443 46666777777776663 31 12222345555566666666555544343 444444555554
Q ss_pred CcCC
Q 038633 172 LPNC 175 (176)
Q Consensus 172 l~~n 175 (176)
+++|
T Consensus 205 l~~n 208 (353)
T 2z80_A 205 LHMK 208 (353)
T ss_dssp EECS
T ss_pred CCCC
Confidence 4444
No 34
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.85 E-value=4.7e-21 Score=140.74 Aligned_cols=136 Identities=23% Similarity=0.263 Sum_probs=77.3
Q ss_pred cccCCcceEeecCCCCccccch-hhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCC-CcchhccCCC
Q 038633 35 PFRDSFDTYEDDAGHELGGPIS-PSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSG-TIPQSLGNLT 112 (176)
Q Consensus 35 ~~~~~~l~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~-~~p~~~~~l~ 112 (176)
+..+.+|++|++++|.+++..+ ..+..+++|++|++++|.+... .+..+..+++|++|++++|.+.+ ..|..+..++
T Consensus 97 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 175 (306)
T 2z66_A 97 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA-FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 175 (306)
T ss_dssp EETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEEC-STTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred cCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCcc-chhhcccCcCCCEEECCCCccccccchhHHhhCc
Confidence 3444455555555555543322 3455555555555555555543 44555555666666666665543 2455556666
Q ss_pred CCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCCC
Q 038633 113 NLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN 176 (176)
Q Consensus 113 ~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n~ 176 (176)
+|+.|++++|.+. ...+..+..+++|++|++++|.+.+.++. .+..+++|+.|++++|+
T Consensus 176 ~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 176 NLTFLDLSQCQLE--QLSPTAFNSLSSLQVLNMSHNNFFSLDTF---PYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp TCCEEECTTSCCC--EECTTTTTTCTTCCEEECTTSCCSBCCSG---GGTTCTTCCEEECTTSC
T ss_pred CCCEEECCCCCcC--CcCHHHhcCCCCCCEEECCCCccCccChh---hccCcccCCEeECCCCC
Confidence 6666666666652 22233456666777777777776655544 45666777777777663
No 35
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.85 E-value=7.6e-21 Score=131.49 Aligned_cols=151 Identities=15% Similarity=0.045 Sum_probs=129.2
Q ss_pred ccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCcc
Q 038633 12 HLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELR 91 (176)
Q Consensus 12 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~ 91 (176)
..+++++.|++++|.+.... ....+.+|++|++++|.++. +..+..+++|++|++++|.+... .+..+..+++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~ 115 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSD-KIPNLSGLTSLT 115 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGG-GSCCCTTCTTCC
T ss_pred hhcCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcc-cChhhcCCCCCC
Confidence 45788999999999887433 57788899999999997753 35788999999999999999975 788899999999
Q ss_pred EEEeecccCCCCcchhccCCCCCCEEEccCCc-cCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEe
Q 038633 92 YLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFL-DQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVEL 170 (176)
Q Consensus 92 ~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L 170 (176)
+|++++|++.+..|..++.+++|+.|++++|+ +...+ .+..+++|++|++++|.+.+.+ .+..+++|++|
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~----~l~~l~~L~~L~l~~n~i~~~~-----~l~~l~~L~~L 186 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM----PLKTLPELKSLNIQFDGVHDYR-----GIEDFPKLNQL 186 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG----GGGGCSSCCEEECTTBCCCCCT-----TGGGCSSCCEE
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH----hhcCCCCCCEEECCCCCCcChH-----HhccCCCCCEE
Confidence 99999999986678889999999999999998 64332 3788999999999999998653 56789999999
Q ss_pred eCcCCC
Q 038633 171 RLPNCN 176 (176)
Q Consensus 171 ~l~~n~ 176 (176)
++++|+
T Consensus 187 ~l~~N~ 192 (197)
T 4ezg_A 187 YAFSQT 192 (197)
T ss_dssp EECBC-
T ss_pred EeeCcc
Confidence 999984
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.85 E-value=5.6e-21 Score=148.14 Aligned_cols=161 Identities=18% Similarity=0.074 Sum_probs=118.2
Q ss_pred cccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcC
Q 038633 9 SDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLK 88 (176)
Q Consensus 9 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~ 88 (176)
..+..+++|+.|++++|.+.+..+..+..+.+|++|++++|.++...+..|.++++|++|++++|.+... .|..+..++
T Consensus 50 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~ 128 (477)
T 2id5_A 50 DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVIL-LDYMFQDLY 128 (477)
T ss_dssp TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEE-CTTTTTTCT
T ss_pred hHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccC-ChhHccccc
Confidence 4566778888888888888777777778888888888888888766666677888888888888888765 667777888
Q ss_pred CccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCc
Q 038633 89 ELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLV 168 (176)
Q Consensus 89 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~ 168 (176)
+|++|++++|.+....+..+..+++|+.|++++|.++. .....+..+++|+.|++++|.+.+.++. .+..+++|+
T Consensus 129 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~i~~~~~~---~~~~l~~L~ 203 (477)
T 2id5_A 129 NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS--IPTEALSHLHGLIVLRLRHLNINAIRDY---SFKRLYRLK 203 (477)
T ss_dssp TCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS--CCHHHHTTCTTCCEEEEESCCCCEECTT---CSCSCTTCC
T ss_pred cCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc--cChhHhcccCCCcEEeCCCCcCcEeChh---hcccCcccc
Confidence 88888888888875556677778888888888887732 2233466677777777777777655543 455566666
Q ss_pred EeeCcCC
Q 038633 169 ELRLPNC 175 (176)
Q Consensus 169 ~L~l~~n 175 (176)
.|++++|
T Consensus 204 ~L~l~~~ 210 (477)
T 2id5_A 204 VLEISHW 210 (477)
T ss_dssp EEEEECC
T ss_pred eeeCCCC
Confidence 6666554
No 37
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.85 E-value=1.6e-20 Score=149.34 Aligned_cols=161 Identities=16% Similarity=0.109 Sum_probs=115.3
Q ss_pred ccccccccceeeccCccccCCCC-cCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcC
Q 038633 10 DLHLLSRIFALSLLRCCSVGSAL-AQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLK 88 (176)
Q Consensus 10 ~~~~~~~l~~l~l~~~~~~~~~~-~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~ 88 (176)
.+..+++++.|++++|.+.+..+ ..+..+..|++|++++|.+++..|..+..+++|++|++++|.+.+...|..+..++
T Consensus 394 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 473 (606)
T 3vq2_A 394 NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTT 473 (606)
T ss_dssp CCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred hccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCC
Confidence 44556777777777777766655 45667777788888888777777777777888888888888777521566677778
Q ss_pred CccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccc-cC
Q 038633 89 ELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLR-SL 167 (176)
Q Consensus 89 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~-~L 167 (176)
+|++|++++|++.+..|..++.+++|+.|++++|++. ...+..+..+++|++|++++|.+...++ .+..++ +|
T Consensus 474 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~~~~~~~l~~L~~L~l~~N~l~~~p~----~~~~l~~~L 547 (606)
T 3vq2_A 474 NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLL--FLDSSHYNQLYSLSTLDCSFNRIETSKG----ILQHFPKSL 547 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS--CEEGGGTTTCTTCCEEECTTSCCCCEES----CGGGSCTTC
T ss_pred CCCEEECCCCcCCccChhhhcccccCCEEECCCCcCC--CcCHHHccCCCcCCEEECCCCcCcccCH----hHhhhcccC
Confidence 8888888888877555667777888888888888773 3334457777888888888888774433 456665 58
Q ss_pred cEeeCcCCC
Q 038633 168 VELRLPNCN 176 (176)
Q Consensus 168 ~~L~l~~n~ 176 (176)
+.|++++|.
T Consensus 548 ~~l~l~~N~ 556 (606)
T 3vq2_A 548 AFFNLTNNS 556 (606)
T ss_dssp CEEECCSCC
T ss_pred cEEEccCCC
Confidence 888887773
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.85 E-value=3.1e-20 Score=140.66 Aligned_cols=112 Identities=13% Similarity=-0.008 Sum_probs=79.4
Q ss_pred cccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchh-hhcCcCC
Q 038633 11 LHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPE-FIGSLKE 89 (176)
Q Consensus 11 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~-~~~~l~~ 89 (176)
+..+++++.|++++|.+.+..+..+..+.+|++|++++|.+++..|..+..+++|++|++++|.+.. +|. .+..+++
T Consensus 65 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~~~~~~l~~ 142 (390)
T 3o6n_A 65 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS--LPRGIFHNTPK 142 (390)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTT
T ss_pred hcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCc--CCHHHhcCCCC
Confidence 4456777777777777766655666777777777777777776666777777777777777777773 443 3566777
Q ss_pred ccEEEeecccCCCCcchhccCCCCCCEEEccCCcc
Q 038633 90 LRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLD 124 (176)
Q Consensus 90 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~ 124 (176)
|++|++++|.+.+..|..++.+++|+.|++++|.+
T Consensus 143 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 177 (390)
T 3o6n_A 143 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRL 177 (390)
T ss_dssp CCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCC
T ss_pred CcEEECCCCccCccChhhccCCCCCCEEECCCCcC
Confidence 77777777777655555667777777777777765
No 39
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.84 E-value=7.2e-21 Score=142.44 Aligned_cols=161 Identities=19% Similarity=0.078 Sum_probs=135.8
Q ss_pred cccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchh--hhcC
Q 038633 9 SDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPE--FIGS 86 (176)
Q Consensus 9 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~--~~~~ 86 (176)
..+..+++++.|++++|.+.+..+..+..+.+|++|++++|.+++..+..+..+++|++|++++|.+.. +|. .+..
T Consensus 70 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~~~~~~~ 147 (353)
T 2z80_A 70 SDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT--LGETSLFSH 147 (353)
T ss_dssp TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS--SCSSCSCTT
T ss_pred HHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcc--cCchhhhcc
Confidence 357788999999999999988777788899999999999999987666669999999999999999994 554 6888
Q ss_pred cCCccEEEeeccc-CCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccc
Q 038633 87 LKELRYLNLSGSF-FSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLR 165 (176)
Q Consensus 87 l~~L~~L~l~~~~-~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~ 165 (176)
+++|++|++++|. +....+..++.+++|+.|++++|.+. ...+..+..+++|++|++++|.+...+.. .+..++
T Consensus 148 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~l~~n~l~~~~~~---~~~~~~ 222 (353)
T 2z80_A 148 LTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ--SYEPKSLKSIQNVSHLILHMKQHILLLEI---FVDVTS 222 (353)
T ss_dssp CTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC--EECTTTTTTCSEEEEEEEECSCSTTHHHH---HHHHTT
T ss_pred CCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC--ccCHHHHhccccCCeecCCCCccccchhh---hhhhcc
Confidence 9999999999994 65444567889999999999999984 34445688999999999999999755543 455688
Q ss_pred cCcEeeCcCCC
Q 038633 166 SLVELRLPNCN 176 (176)
Q Consensus 166 ~L~~L~l~~n~ 176 (176)
+|+.|++++|+
T Consensus 223 ~L~~L~L~~n~ 233 (353)
T 2z80_A 223 SVECLELRDTD 233 (353)
T ss_dssp TEEEEEEESCB
T ss_pred cccEEECCCCc
Confidence 99999999873
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=2.6e-20 Score=148.24 Aligned_cols=114 Identities=12% Similarity=-0.041 Sum_probs=85.6
Q ss_pred cccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCc
Q 038633 11 LHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKEL 90 (176)
Q Consensus 11 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L 90 (176)
+..+++|+.|++++|.+.+..+..+..+.+|++|++++|.+++..|..|..+++|++|++++|.+... .+..+..+++|
T Consensus 71 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L 149 (597)
T 3oja_B 71 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKL 149 (597)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTC
T ss_pred HccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCC-CHHHhccCCCC
Confidence 34567788888888887776666777778888888888888777777778888888888888887743 33445778888
Q ss_pred cEEEeecccCCCCcchhccCCCCCCEEEccCCccC
Q 038633 91 RYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQ 125 (176)
Q Consensus 91 ~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~ 125 (176)
++|++++|.+.+..|..++.+++|+.|++++|.+.
T Consensus 150 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 184 (597)
T 3oja_B 150 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 184 (597)
T ss_dssp CEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS
T ss_pred CEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC
Confidence 88888888887666666777788888888777663
No 41
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.84 E-value=8.6e-20 Score=127.10 Aligned_cols=137 Identities=20% Similarity=0.125 Sum_probs=85.2
Q ss_pred ccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEE
Q 038633 14 LSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYL 93 (176)
Q Consensus 14 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L 93 (176)
.++++.|++++|.+.+..+..+..+.+|++|++++|.+++..+..|..+++|++|++++|.+... .+..+..+++|++|
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL-PNGVFDKLTQLKEL 105 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCcc-CHhHhcCccCCCEE
Confidence 34566777777766655444555666677777777776655555566677777777777766643 34445666777777
Q ss_pred EeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCc
Q 038633 94 NLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKD 153 (176)
Q Consensus 94 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 153 (176)
++++|++.+..+..+..+++|+.|++++|.++. .....+..+++|++|++++|.+.+.
T Consensus 106 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~--~~~~~~~~l~~L~~L~l~~N~~~~~ 163 (208)
T 2o6s_A 106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS--VPDGVFDRLTSLQYIWLHDNPWDCT 163 (208)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC--CCTTTTTTCTTCCEEECCSCCBCCC
T ss_pred EcCCCcCcccCHhHhccCCcCCEEECCCCccce--eCHHHhccCCCccEEEecCCCeecC
Confidence 777777664434445666777777777766632 2223356666777777777766544
No 42
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.84 E-value=4.4e-20 Score=146.78 Aligned_cols=161 Identities=17% Similarity=0.058 Sum_probs=113.7
Q ss_pred ccccccccceeeccCccccCCCCc-CcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCc--chhhhcC
Q 038633 10 DLHLLSRIFALSLLRCCSVGSALA-QPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFK--VPEFIGS 86 (176)
Q Consensus 10 ~~~~~~~l~~l~l~~~~~~~~~~~-~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~p~~~~~ 86 (176)
.+..+++++.|++++|.+.+..+. .+..+.+|++|++++|.+++..+..+..+++|++|++++|.+.+.. .+..+..
T Consensus 395 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 474 (606)
T 3t6q_A 395 AFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQT 474 (606)
T ss_dssp TTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGG
T ss_pred HhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhcc
Confidence 445566677777777666654433 3566677777777777777666777777777888888777776421 2245667
Q ss_pred cCCccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhcccc
Q 038633 87 LKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRS 166 (176)
Q Consensus 87 l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~ 166 (176)
+++|++|++++|++.+..|..++.+++|+.|++++|++. ...+..+..+++| +|++++|.+.+.++. .++.+++
T Consensus 475 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~--~~~~~~l~~l~~L-~L~L~~N~l~~~~~~---~~~~l~~ 548 (606)
T 3t6q_A 475 LGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT--SSSIEALSHLKGI-YLNLASNHISIILPS---LLPILSQ 548 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC--GGGGGGGTTCCSC-EEECCSSCCCCCCGG---GHHHHHT
T ss_pred CCCccEEECCCCccCccChhhhccccCCCEEECCCCccC--cCChhHhCccccc-EEECcCCcccccCHh---hcccCCC
Confidence 778888888888877555677777888888888888773 3444557778888 888888888877765 5667788
Q ss_pred CcEeeCcCCC
Q 038633 167 LVELRLPNCN 176 (176)
Q Consensus 167 L~~L~l~~n~ 176 (176)
|+.|++++|.
T Consensus 549 L~~L~l~~N~ 558 (606)
T 3t6q_A 549 QRTINLRQNP 558 (606)
T ss_dssp SSEEECTTCC
T ss_pred CCEEeCCCCC
Confidence 8888888874
No 43
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.84 E-value=3.5e-20 Score=130.32 Aligned_cols=136 Identities=17% Similarity=0.083 Sum_probs=120.3
Q ss_pred ccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEE
Q 038633 14 LSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYL 93 (176)
Q Consensus 14 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L 93 (176)
.++++.|++++|.+.+..+..+..+.+|++|++++|.+++..|..|.++++|++|++++|.+... .+..+..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L 109 (220)
T 2v9t_B 31 PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL-PKSLFEGLFSLQLL 109 (220)
T ss_dssp CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCC-CTTTTTTCTTCCEE
T ss_pred CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCcc-CHhHccCCCCCCEE
Confidence 36899999999999887777888999999999999999988899999999999999999999954 44557889999999
Q ss_pred EeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCC
Q 038633 94 NLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSK 152 (176)
Q Consensus 94 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 152 (176)
++++|++.+..|..+..+++|+.|++++|.++. .....+..+++|++|++++|.+.-
T Consensus 110 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 110 LLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT--IAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC--CCTTTTTTCTTCCEEECCSSCEEC
T ss_pred ECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCE--ECHHHHhCCCCCCEEEeCCCCcCC
Confidence 999999997778889999999999999999943 334458889999999999999853
No 44
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.84 E-value=4.4e-20 Score=148.64 Aligned_cols=157 Identities=20% Similarity=0.089 Sum_probs=134.0
Q ss_pred ccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEE
Q 038633 14 LSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYL 93 (176)
Q Consensus 14 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L 93 (176)
.++++.|++++|.+.+..+..+..+.+|++|++++|.+++..|..+.++++|++|++++|.+... .+..+..+++|++|
T Consensus 24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~L 102 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQL-SDKTFAFCTNLTEL 102 (680)
T ss_dssp CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCC-CTTTTTTCTTCSEE
T ss_pred CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCcc-ChhhhccCCCCCEE
Confidence 46899999999999887777788999999999999999988899999999999999999999954 44578899999999
Q ss_pred EeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhh--ccccCcEee
Q 038633 94 NLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESIS--MLRSLVELR 171 (176)
Q Consensus 94 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~--~~~~L~~L~ 171 (176)
++++|++.+..|..++.+++|++|++++|.+. ......+..+++|++|++++|.+.+.++. .++ .+++|++|+
T Consensus 103 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~~~~~~~~L~~L~ 177 (680)
T 1ziw_A 103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS--STKLGTQVQLENLQELLLSNNKIQALKSE---ELDIFANSSLKKLE 177 (680)
T ss_dssp ECCSSCCCCCCSCTTTTCTTCCEEECCSSCCS--CCCCCSSSCCTTCCEEECCSSCCCCBCHH---HHGGGTTCEESEEE
T ss_pred ECCCCccCccChhHccccCCCCEEECCCCccc--ccCchhhcccccCCEEEccCCcccccCHH---HhhccccccccEEE
Confidence 99999998666678999999999999999884 33444578899999999999999887765 433 458899999
Q ss_pred CcCCC
Q 038633 172 LPNCN 176 (176)
Q Consensus 172 l~~n~ 176 (176)
+++|+
T Consensus 178 L~~n~ 182 (680)
T 1ziw_A 178 LSSNQ 182 (680)
T ss_dssp CTTCC
T ss_pred CCCCc
Confidence 98873
No 45
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.84 E-value=2e-20 Score=144.07 Aligned_cols=140 Identities=16% Similarity=0.101 Sum_probs=113.9
Q ss_pred ccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccc-hhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccE
Q 038633 14 LSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPI-SPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRY 92 (176)
Q Consensus 14 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~ 92 (176)
.++++.|++++|.+.+..+..+..+.+|++|++++|.+.+.+ +..|..+++|++|++++|.+... .|..+..+++|++
T Consensus 29 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~ 107 (455)
T 3v47_A 29 PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQL-ETGAFNGLANLEV 107 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEE-CTTTTTTCTTCCE
T ss_pred CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCcc-ChhhccCcccCCE
Confidence 367899999999988877778888999999999999887544 56788899999999999998865 6888888999999
Q ss_pred EEeecccCCCCcchh--ccCCCCCCEEEccCCccCccccccc-ccCCCCCccEEeccCCCCCCchhh
Q 038633 93 LNLSGSFFSGTIPQS--LGNLTNLLYLDLNNFLDQSNQIGLG-WLSGLPSLKYLNLGGADLSKDAAY 156 (176)
Q Consensus 93 L~l~~~~~~~~~p~~--~~~l~~L~~L~l~~n~~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~ 156 (176)
|++++|++.+..|.. ++.+++|++|++++|.+.. ..+. .+..+++|++|++++|.+.+..+.
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 172 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKK--IQPASFFLNMRRFHVLDLTFNKVKSICEE 172 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCS--CCCCGGGGGCTTCCEEECTTCCBSCCCTT
T ss_pred EeCCCCCCCccccCcccccCcccCCEEECCCCccCc--cCcccccCCCCcccEEeCCCCcccccChh
Confidence 999999987545554 7888999999999998842 2222 267888999999999988876654
No 46
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.84 E-value=1.3e-20 Score=148.22 Aligned_cols=154 Identities=23% Similarity=0.218 Sum_probs=115.0
Q ss_pred ccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEE
Q 038633 14 LSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYL 93 (176)
Q Consensus 14 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L 93 (176)
.++++.|++++|.+.+..+..+..+.+|++|++++|.+++..|..|..+++|++|++++|.+... .|..+..+++|++|
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L 103 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSL-SSSWFGPLSSLKYL 103 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSC-CHHHHTTCTTCCEE
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCcc-CHHHhccCCCCcEE
Confidence 36788999999888877777788888899999999988887778888889999999999988865 66668888899999
Q ss_pred EeecccCCC-CcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeC
Q 038633 94 NLSGSFFSG-TIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRL 172 (176)
Q Consensus 94 ~l~~~~~~~-~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l 172 (176)
++++|++.+ ..|..++.+++|+.|++++|... .......+..+++|++|++++|.+.+..+. .++.+++|++|++
T Consensus 104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~l~~l~~L~~L~l 179 (549)
T 2z81_A 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF-SEIRRIDFAGLTSLNELEIKALSLRNYQSQ---SLKSIRDIHHLTL 179 (549)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSC-CEECTTTTTTCCEEEEEEEEETTCCEECTT---TTTTCSEEEEEEE
T ss_pred ECCCCcccccchhhhhhccCCccEEECCCCccc-cccCHhhhhcccccCeeeccCCcccccChh---hhhccccCceEec
Confidence 999988864 34567788888888888888731 122223467778888888888877765543 3333333333333
No 47
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.84 E-value=8.6e-20 Score=129.05 Aligned_cols=149 Identities=15% Similarity=0.012 Sum_probs=124.2
Q ss_pred ceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeec
Q 038633 18 FALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSG 97 (176)
Q Consensus 18 ~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~ 97 (176)
++++.+++.+...... ...++++|++++|.+++..+..|..+++|++|++++|.+... .+..+..+++|++|++++
T Consensus 22 ~~v~c~~~~l~~ip~~---~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i-~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAG---IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGAL-PVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TEEECTTSCCSSCCSC---CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCS
T ss_pred CEeEccCCCcCccCCC---CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCc-ChhhcccCCCcCEEECCC
Confidence 4577776666544322 237899999999999988899999999999999999999854 445678999999999999
Q ss_pred ccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCCC
Q 038633 98 SFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN 176 (176)
Q Consensus 98 ~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n~ 176 (176)
|++....+..+..+++|+.|++++|.++.. +..+..+++|++|++++|.+.+.++. .+..+++|+.|++++|.
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~l---p~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLTEL---PRGIERLTHLTHLALDQNQLKSIPHG---AFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCSC---CTTGGGCTTCSEEECCSSCCCCCCTT---TTTTCTTCCEEECTTSC
T ss_pred CcCCccChhHhCcchhhCeEeccCCccccc---CcccccCCCCCEEECCCCcCCccCHH---HHhCCCCCCEEEeeCCC
Confidence 999855556678999999999999999633 23468899999999999999987765 67889999999999984
No 48
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.83 E-value=1.5e-20 Score=133.66 Aligned_cols=152 Identities=15% Similarity=0.052 Sum_probs=75.1
Q ss_pred ccceeeccCccccCCCCcCcccCCcceEeecCCCC-ccccchhhhcCCCCCcEEEccC-ccccCCcchhhhcCcCCccEE
Q 038633 16 RIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHE-LGGPISPSLLQLKDLKYLDLSM-NNFKGFKVPEFIGSLKELRYL 93 (176)
Q Consensus 16 ~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~p~~~~~l~~L~~L 93 (176)
+++.|++++|.+.+..+..+..+++|++|++++|. ++...+..|..+++|++|++++ |.+... .+..+..+++|++|
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i-~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYI-DPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEE-CTTSEECCTTCCEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEc-CHHHhCCCCCCCEE
Confidence 45555555555554444445555555555555554 5444444555555555555555 555532 33344455555555
Q ss_pred EeecccCCCCcch---------------------------hccCCCCCC-EEEccCCccCcccccccccCCCCCccEEec
Q 038633 94 NLSGSFFSGTIPQ---------------------------SLGNLTNLL-YLDLNNFLDQSNQIGLGWLSGLPSLKYLNL 145 (176)
Q Consensus 94 ~l~~~~~~~~~p~---------------------------~~~~l~~L~-~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l 145 (176)
++++|++. .+|. .+..+++|+ .+++++|.++. .....+.. ++|++|++
T Consensus 111 ~l~~n~l~-~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~--i~~~~~~~-~~L~~L~L 186 (239)
T 2xwt_C 111 GIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTS--VQGYAFNG-TKLDAVYL 186 (239)
T ss_dssp EEEEECCC-SCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCE--ECTTTTTT-CEEEEEEC
T ss_pred eCCCCCCc-cccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcc--cCHhhcCC-CCCCEEEc
Confidence 55555544 2332 344445555 55555554421 11112222 45555555
Q ss_pred cCCC-CCCchhhhHHHhhcc-ccCcEeeCcCC
Q 038633 146 GGAD-LSKDAAYWLESISML-RSLVELRLPNC 175 (176)
Q Consensus 146 ~~n~-l~~~~~~~~~~l~~~-~~L~~L~l~~n 175 (176)
++|. +.+.++. .+..+ ++|+.|++++|
T Consensus 187 ~~n~~l~~i~~~---~~~~l~~~L~~L~l~~N 215 (239)
T 2xwt_C 187 NKNKYLTVIDKD---AFGGVYSGPSLLDVSQT 215 (239)
T ss_dssp TTCTTCCEECTT---TTTTCSBCCSEEECTTC
T ss_pred CCCCCcccCCHH---HhhccccCCcEEECCCC
Confidence 5553 5444333 44455 56666666555
No 49
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.83 E-value=6.7e-20 Score=144.61 Aligned_cols=158 Identities=18% Similarity=0.064 Sum_probs=131.8
Q ss_pred ccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEE
Q 038633 14 LSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYL 93 (176)
Q Consensus 14 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L 93 (176)
.++++.|++++|.+.+..+..+..+.+|++|++++|.+++..+..|.++++|++|++++|.+... .|..+..+++|++|
T Consensus 27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L 105 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKL 105 (570)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEE
T ss_pred cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCcc-CHhhhcCccccccc
Confidence 46799999999999887777888999999999999999888788899999999999999999865 66789999999999
Q ss_pred EeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccC----cE
Q 038633 94 NLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSL----VE 169 (176)
Q Consensus 94 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L----~~ 169 (176)
++++|++....+..++.+++|++|++++|.+... ..+..+..+++|++|++++|.+.+.++. .++.++.| ..
T Consensus 106 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~-~lp~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~~~~~ 181 (570)
T 2z63_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSF-KLPEYFSNLTNLEHLDLSSNKIQSIYCT---DLRVLHQMPLLNLS 181 (570)
T ss_dssp ECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCC-CCCGGGGGCTTCCEEECTTSCCCEECGG---GGHHHHTCTTCCCE
T ss_pred cccccccccCCCccccccccccEEecCCCcccee-cChhhhcccCCCCEEeCcCCccceecHH---Hccchhccchhhhh
Confidence 9999999844444688999999999999988431 2234578899999999999999877765 55555666 77
Q ss_pred eeCcCCC
Q 038633 170 LRLPNCN 176 (176)
Q Consensus 170 L~l~~n~ 176 (176)
+++++|+
T Consensus 182 L~l~~n~ 188 (570)
T 2z63_A 182 LDLSLNP 188 (570)
T ss_dssp EECTTCC
T ss_pred cccCCCC
Confidence 8887763
No 50
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=1.9e-19 Score=125.35 Aligned_cols=150 Identities=23% Similarity=0.145 Sum_probs=121.7
Q ss_pred ceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeec
Q 038633 18 FALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSG 97 (176)
Q Consensus 18 ~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~ 97 (176)
+.++.+++.+..... ....++++|++++|.+++..+..+..+++|++|++++|.+... .+..+..+++|++|++++
T Consensus 10 ~~v~c~~~~l~~~p~---~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 10 TTVECYSQGRTSVPT---GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TEEECCSSCCSSCCS---CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCccCCCC---CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc-ChhhcCCCCCcCEEECCC
Confidence 455666655544322 2345799999999999877777788999999999999999955 555678899999999999
Q ss_pred ccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCCC
Q 038633 98 SFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN 176 (176)
Q Consensus 98 ~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n~ 176 (176)
|++.+..+..++.+++|+.|++++|.++ ......+..+++|++|++++|.+.+.++. .+..+++|+.|++++|.
T Consensus 86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~l~~N~l~~~~~~---~~~~l~~L~~L~l~~N~ 159 (208)
T 2o6s_A 86 NQLQSLPNGVFDKLTQLKELALNTNQLQ--SLPDGVFDKLTQLKDLRLYQNQLKSVPDG---VFDRLTSLQYIWLHDNP 159 (208)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCCSCCCTT---TTTTCTTCCEEECCSCC
T ss_pred CcCCccCHhHhcCccCCCEEEcCCCcCc--ccCHhHhccCCcCCEEECCCCccceeCHH---HhccCCCccEEEecCCC
Confidence 9998555556789999999999999984 33344578899999999999999977765 67889999999999984
No 51
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.83 E-value=1.9e-19 Score=136.30 Aligned_cols=82 Identities=18% Similarity=0.121 Sum_probs=46.4
Q ss_pred cCCccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhcccc
Q 038633 87 LKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRS 166 (176)
Q Consensus 87 l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~ 166 (176)
+++|++|++++|.+.+..|..+..+++|+.|++++|+++..+ ..+..+++|++|++++|.+.+.++ .++.+++
T Consensus 247 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~l~~L~~L~L~~n~l~~~~~----~~~~l~~ 319 (390)
T 3o6n_A 247 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN---LYGQPIPTLKVLDLSHNHLLHVER----NQPQFDR 319 (390)
T ss_dssp CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEE---CSSSCCTTCCEEECCSSCCCCCGG----GHHHHTT
T ss_pred CCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccC---cccCCCCCCCEEECCCCcceecCc----cccccCc
Confidence 344555555555554344455555666666666666553221 123456677777777777765443 3455667
Q ss_pred CcEeeCcCC
Q 038633 167 LVELRLPNC 175 (176)
Q Consensus 167 L~~L~l~~n 175 (176)
|+.|++++|
T Consensus 320 L~~L~L~~N 328 (390)
T 3o6n_A 320 LENLYLDHN 328 (390)
T ss_dssp CSEEECCSS
T ss_pred CCEEECCCC
Confidence 777777666
No 52
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.83 E-value=8.1e-21 Score=152.15 Aligned_cols=166 Identities=14% Similarity=0.053 Sum_probs=115.0
Q ss_pred eeecccccccccccceeeccCccccCCCCcCcccCCcceEeecCCCC---------------------------------
Q 038633 4 FVFALSDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHE--------------------------------- 50 (176)
Q Consensus 4 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~--------------------------------- 50 (176)
.++.|..- ..++.|+++++.+.+..+.....++.|++|++++|.
T Consensus 73 ~GV~C~~~---~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~ 149 (636)
T 4eco_A 73 PGVSLNSN---GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTF 149 (636)
T ss_dssp TTEEECTT---CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHH
T ss_pred CCeEEcCC---CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhh
Confidence 55555432 577888888888877777777888888888887773
Q ss_pred ---------------------------------------------ccccchhhhcCCCCCcEEEccCccccCC-------
Q 038633 51 ---------------------------------------------LGGPISPSLLQLKDLKYLDLSMNNFKGF------- 78 (176)
Q Consensus 51 ---------------------------------------------l~~~~~~~l~~l~~L~~L~l~~~~~~~~------- 78 (176)
+++ +|..+.++++|++|++++|.+++.
T Consensus 150 l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 228 (636)
T 4eco_A 150 VDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWE 228 (636)
T ss_dssp TCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCS
T ss_pred hccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcccccccccccc
Confidence 334 677788888888888888887740
Q ss_pred ---------cchhhhc--CcCCccEEEeecccCCCCcchhccCCCCCCEEEccCCc-cCcccccccccCC------CCCc
Q 038633 79 ---------KVPEFIG--SLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFL-DQSNQIGLGWLSG------LPSL 140 (176)
Q Consensus 79 ---------~~p~~~~--~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~------l~~L 140 (176)
.+|..++ .+++|++|++++|++.+..|..++.+++|+.|++++|+ ++. ...+..+.. +++|
T Consensus 229 ~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~-~~lp~~~~~L~~~~~l~~L 307 (636)
T 4eco_A 229 NENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISG-EQLKDDWQALADAPVGEKI 307 (636)
T ss_dssp CTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCH-HHHHHHHHHHHHSGGGGTC
T ss_pred ccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCcc-ccchHHHHhhhccccCCCC
Confidence 0677777 78888888888888877788888888888888888887 531 011222333 3677
Q ss_pred cEEeccCCCCCCchhhhHHHhhccccCcEeeCcCCC
Q 038633 141 KYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN 176 (176)
Q Consensus 141 ~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n~ 176 (176)
++|++++|.+...+.. ..++.+++|++|++++|+
T Consensus 308 ~~L~L~~n~l~~ip~~--~~l~~l~~L~~L~L~~N~ 341 (636)
T 4eco_A 308 QIIYIGYNNLKTFPVE--TSLQKMKKLGMLECLYNQ 341 (636)
T ss_dssp CEEECCSSCCSSCCCH--HHHTTCTTCCEEECCSCC
T ss_pred CEEECCCCcCCccCch--hhhccCCCCCEEeCcCCc
Confidence 7777777777633321 145667777777777663
No 53
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.83 E-value=9.6e-20 Score=135.25 Aligned_cols=156 Identities=17% Similarity=0.087 Sum_probs=106.0
Q ss_pred ccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEE
Q 038633 14 LSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYL 93 (176)
Q Consensus 14 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L 93 (176)
.++++.|++++|.+.+..+..+..+.+|++|++++|.+++..|..+..+++|++|++++|.+. .+|..+. ++|++|
T Consensus 53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~--~l~~~~~--~~L~~L 128 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV--EIPPNLP--SSLVEL 128 (332)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC--SCCSSCC--TTCCEE
T ss_pred CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC--ccCcccc--ccCCEE
Confidence 357888888888887766667788888888888888888777888888888888888888877 3555443 567777
Q ss_pred EeecccCCCCcchhccCCCCCCEEEccCCccCccc--------------------------------------------c
Q 038633 94 NLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQ--------------------------------------------I 129 (176)
Q Consensus 94 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~--------------------------------------------~ 129 (176)
++++|++....+..+..+++|+.|++++|.++... .
T Consensus 129 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~ 208 (332)
T 2ft3_A 129 RIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAI 208 (332)
T ss_dssp ECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCC
T ss_pred ECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCcc
Confidence 77777776433445666666777766666552111 1
Q ss_pred cccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCCC
Q 038633 130 GLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN 176 (176)
Q Consensus 130 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n~ 176 (176)
....+..+++|++|++++|.+.+.++. .++.+++|++|++++|+
T Consensus 209 ~~~~l~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~N~ 252 (332)
T 2ft3_A 209 ELEDLLRYSKLYRLGLGHNQIRMIENG---SLSFLPTLRELHLDNNK 252 (332)
T ss_dssp CTTSSTTCTTCSCCBCCSSCCCCCCTT---GGGGCTTCCEEECCSSC
T ss_pred CHHHhcCCCCCCEEECCCCcCCcCChh---HhhCCCCCCEEECCCCc
Confidence 112345566666666666666655554 55666777777777663
No 54
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.83 E-value=1.8e-19 Score=133.68 Aligned_cols=157 Identities=17% Similarity=0.073 Sum_probs=88.2
Q ss_pred cccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCcccc------------------
Q 038633 15 SRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFK------------------ 76 (176)
Q Consensus 15 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~------------------ 76 (176)
+.++.|++++|.+.+..+..+..+.+|++|++++|.+++..|..+..+++|++|++++|.+.
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n 131 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHEN 131 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSS
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCC
Confidence 46677777777776665556666777777777777776666777777777777777776655
Q ss_pred ---CCcchhhhcCcCCccEEEeecccCCC--CcchhccCCCCCCEEEccCCccCccc-------------------cccc
Q 038633 77 ---GFKVPEFIGSLKELRYLNLSGSFFSG--TIPQSLGNLTNLLYLDLNNFLDQSNQ-------------------IGLG 132 (176)
Q Consensus 77 ---~~~~p~~~~~l~~L~~L~l~~~~~~~--~~p~~~~~l~~L~~L~l~~n~~~~~~-------------------~~~~ 132 (176)
.. .+..+..+++|++|++++|.+.. ..+..+..+++|+.|++++|.++..+ ....
T Consensus 132 ~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~ 210 (330)
T 1xku_A 132 EITKV-RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAA 210 (330)
T ss_dssp CCCBB-CHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTG
T ss_pred ccccc-CHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHH
Confidence 21 23334555556666666655532 23344455555555555555442111 1112
Q ss_pred ccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCC
Q 038633 133 WLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNC 175 (176)
Q Consensus 133 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n 175 (176)
.+..+++|++|++++|.+.+.++. .++.+++|++|++++|
T Consensus 211 ~~~~l~~L~~L~Ls~n~l~~~~~~---~~~~l~~L~~L~L~~N 250 (330)
T 1xku_A 211 SLKGLNNLAKLGLSFNSISAVDNG---SLANTPHLRELHLNNN 250 (330)
T ss_dssp GGTTCTTCCEEECCSSCCCEECTT---TGGGSTTCCEEECCSS
T ss_pred HhcCCCCCCEEECCCCcCceeChh---hccCCCCCCEEECCCC
Confidence 344555555555555555544433 4445555555555555
No 55
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.83 E-value=8.9e-21 Score=139.81 Aligned_cols=159 Identities=19% Similarity=0.085 Sum_probs=95.4
Q ss_pred cccccceeeccCccccCCCCcCc--ccCCcceEeecCCCCccccchhhhcCC-----CCCcEEEccCccccCCcchhhhc
Q 038633 13 LLSRIFALSLLRCCSVGSALAQP--FRDSFDTYEDDAGHELGGPISPSLLQL-----KDLKYLDLSMNNFKGFKVPEFIG 85 (176)
Q Consensus 13 ~~~~l~~l~l~~~~~~~~~~~~~--~~~~~l~~L~l~~n~l~~~~~~~l~~l-----~~L~~L~l~~~~~~~~~~p~~~~ 85 (176)
.+++++.|++++|.+.+..+... ..+.+|++|++++|.+++. |..+..+ ++|++|++++|.+... .|..+.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~-~~~~~~ 170 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNF-SCEQVR 170 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCC-CTTTCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccc-hHHHhc
Confidence 35677777777777776555544 6667777777777777655 5555555 6777777777777654 556666
Q ss_pred CcCCccEEEeecccCCCC--cchhc--cCCCCCCEEEccCCccCcccccc-cccCCCCCccEEeccCCCCCCchhhhHHH
Q 038633 86 SLKELRYLNLSGSFFSGT--IPQSL--GNLTNLLYLDLNNFLDQSNQIGL-GWLSGLPSLKYLNLGGADLSKDAAYWLES 160 (176)
Q Consensus 86 ~l~~L~~L~l~~~~~~~~--~p~~~--~~l~~L~~L~l~~n~~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 160 (176)
.+++|++|++++|++.+. .|..+ +.+++|++|++++|.++...... ..+..+++|++|++++|.+.+.++. ..
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--~~ 248 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA--PS 248 (312)
T ss_dssp CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCC--SC
T ss_pred cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccch--hh
Confidence 777777777777765432 23333 56666777777776664221111 1234556666666666666654421 03
Q ss_pred hhccccCcEeeCcCC
Q 038633 161 ISMLRSLVELRLPNC 175 (176)
Q Consensus 161 l~~~~~L~~L~l~~n 175 (176)
+..+++|++|++++|
T Consensus 249 ~~~l~~L~~L~Ls~N 263 (312)
T 1wwl_A 249 CDWPSQLNSLNLSFT 263 (312)
T ss_dssp CCCCTTCCEEECTTS
T ss_pred hhhcCCCCEEECCCC
Confidence 334556666666655
No 56
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=2.3e-19 Score=142.73 Aligned_cols=84 Identities=18% Similarity=0.125 Sum_probs=49.5
Q ss_pred CcCCccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccc
Q 038633 86 SLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLR 165 (176)
Q Consensus 86 ~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~ 165 (176)
.+++|++|++++|.+.+..|..++.+++|+.|++++|.+...+ ..+..+++|++|++++|.+...++ .++.++
T Consensus 252 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~---~~~~~l~~L~~L~Ls~N~l~~i~~----~~~~l~ 324 (597)
T 3oja_B 252 NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN---LYGQPIPTLKVLDLSHNHLLHVER----NQPQFD 324 (597)
T ss_dssp GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEE---CSSSCCTTCCEEECCSSCCCCCGG----GHHHHT
T ss_pred cCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCC---cccccCCCCcEEECCCCCCCccCc----ccccCC
Confidence 3445555555555555444555666666666666666663321 224556777777777777765443 445566
Q ss_pred cCcEeeCcCCC
Q 038633 166 SLVELRLPNCN 176 (176)
Q Consensus 166 ~L~~L~l~~n~ 176 (176)
+|+.|++++|.
T Consensus 325 ~L~~L~L~~N~ 335 (597)
T 3oja_B 325 RLENLYLDHNS 335 (597)
T ss_dssp TCSEEECCSSC
T ss_pred CCCEEECCCCC
Confidence 77777777663
No 57
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.83 E-value=4.5e-20 Score=145.17 Aligned_cols=164 Identities=19% Similarity=0.125 Sum_probs=136.7
Q ss_pred ccccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCc
Q 038633 8 LSDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSL 87 (176)
Q Consensus 8 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l 87 (176)
...+..++++++|++++|.+.+..+..+..+.+|++|++++|.+++..+..|..+++|++|++++|.+.....|..+..+
T Consensus 43 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l 122 (549)
T 2z81_A 43 HGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122 (549)
T ss_dssp SSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTC
T ss_pred hhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhcc
Confidence 35677899999999999999988778889999999999999999988888899999999999999999864356788899
Q ss_pred CCccEEEeecccCCCCcc-hhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhcccc
Q 038633 88 KELRYLNLSGSFFSGTIP-QSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRS 166 (176)
Q Consensus 88 ~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~ 166 (176)
++|++|++++|.+.+..| ..++.+++|++|++++|.++ ...+..+..+++|++|++++|.+...+.. .++.+++
T Consensus 123 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~l~~n~~~~~~~~---~~~~l~~ 197 (549)
T 2z81_A 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR--NYQSQSLKSIRDIHHLTLHLSESAFLLEI---FADILSS 197 (549)
T ss_dssp TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC--EECTTTTTTCSEEEEEEEECSBSTTHHHH---HHHSTTT
T ss_pred CCccEEECCCCccccccCHhhhhcccccCeeeccCCccc--ccChhhhhccccCceEecccCcccccchh---hHhhccc
Confidence 999999999998544665 57889999999999999984 33445578888899999999887644432 3456788
Q ss_pred CcEeeCcCCC
Q 038633 167 LVELRLPNCN 176 (176)
Q Consensus 167 L~~L~l~~n~ 176 (176)
|+.|++++|+
T Consensus 198 L~~L~L~~n~ 207 (549)
T 2z81_A 198 VRYLELRDTN 207 (549)
T ss_dssp BSEEEEESCB
T ss_pred ccEEEccCCc
Confidence 8888888763
No 58
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=5.2e-19 Score=130.20 Aligned_cols=149 Identities=24% Similarity=0.276 Sum_probs=92.6
Q ss_pred cccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcC
Q 038633 9 SDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLK 88 (176)
Q Consensus 9 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~ 88 (176)
+.+..+++++.|++++|.+.+..+ +..+.+|++|++++|.+++. ..+..+++|++|++++|.+.. ++. +..++
T Consensus 57 ~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~--~~~-l~~l~ 129 (308)
T 1h6u_A 57 EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITD--VTP-LAGLS 129 (308)
T ss_dssp TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCC--CGG-GTTCT
T ss_pred hhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECCCCCCCC--chh-hcCCC
Confidence 345566777777777776655433 56666777777777776542 246667777777777777663 332 56667
Q ss_pred CccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCc
Q 038633 89 ELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLV 168 (176)
Q Consensus 89 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~ 168 (176)
+|++|++++|++. ..+. ++.+++|+.|++++|.++.... +..+++|++|++++|.+.+.++ +..+++|+
T Consensus 130 ~L~~L~l~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~l~~n~l~~~~~-----l~~l~~L~ 198 (308)
T 1h6u_A 130 NLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSDLTP----LANLSKLTTLKADDNKISDISP-----LASLPNLI 198 (308)
T ss_dssp TCCEEECCSSCCC-CCGG-GGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCCCGG-----GGGCTTCC
T ss_pred CCCEEECCCCccC-cCcc-ccCCCCccEEEccCCcCCCChh----hcCCCCCCEEECCCCccCcChh-----hcCCCCCC
Confidence 7777777777665 2332 5566677777777766632221 5566667777777766664432 45566666
Q ss_pred EeeCcCC
Q 038633 169 ELRLPNC 175 (176)
Q Consensus 169 ~L~l~~n 175 (176)
+|++++|
T Consensus 199 ~L~L~~N 205 (308)
T 1h6u_A 199 EVHLKNN 205 (308)
T ss_dssp EEECTTS
T ss_pred EEEccCC
Confidence 6666665
No 59
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.82 E-value=3.1e-19 Score=132.36 Aligned_cols=159 Identities=19% Similarity=0.135 Sum_probs=103.1
Q ss_pred cccccccceeeccCccccCCCCcCcccCCcceEeec---------------------CCCCccccchhhhcCCCCCcEEE
Q 038633 11 LHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDD---------------------AGHELGGPISPSLLQLKDLKYLD 69 (176)
Q Consensus 11 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l---------------------~~n~l~~~~~~~l~~l~~L~~L~ 69 (176)
+..+++|+.|++++|.+.+..+..+..+.+|++|++ ++|.+++..+..+..+++|++|+
T Consensus 72 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 151 (330)
T 1xku_A 72 FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE 151 (330)
T ss_dssp TTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEE
T ss_pred hccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEE
Confidence 344455555555555554444444444444444444 44444444445567777777777
Q ss_pred ccCccccC--CcchhhhcCcCCcc---------------------EEEeecccCCCCcchhccCCCCCCEEEccCCccCc
Q 038633 70 LSMNNFKG--FKVPEFIGSLKELR---------------------YLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQS 126 (176)
Q Consensus 70 l~~~~~~~--~~~p~~~~~l~~L~---------------------~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~ 126 (176)
+++|.+.. . .+..+..+++|+ +|++++|++.+..|..+..+++|+.|++++|.++.
T Consensus 152 l~~n~l~~~~~-~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 230 (330)
T 1xku_A 152 LGTNPLKSSGI-ENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA 230 (330)
T ss_dssp CCSSCCCGGGB-CTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCCccCc-ChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCce
Confidence 77777642 2 344455555554 45555555553445678888999999999998843
Q ss_pred ccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCCC
Q 038633 127 NQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN 176 (176)
Q Consensus 127 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n~ 176 (176)
.....+..+++|++|++++|.+...+. .+..+++|++|++++|+
T Consensus 231 --~~~~~~~~l~~L~~L~L~~N~l~~lp~----~l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 231 --VDNGSLANTPHLRELHLNNNKLVKVPG----GLADHKYIQVVYLHNNN 274 (330)
T ss_dssp --ECTTTGGGSTTCCEEECCSSCCSSCCT----TTTTCSSCCEEECCSSC
T ss_pred --eChhhccCCCCCCEEECCCCcCccCCh----hhccCCCcCEEECCCCc
Confidence 333457889999999999999985543 67889999999999984
No 60
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.82 E-value=2e-19 Score=126.41 Aligned_cols=137 Identities=14% Similarity=0.026 Sum_probs=120.1
Q ss_pred ccccceeeccCccccCCCC-cCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccE
Q 038633 14 LSRIFALSLLRCCSVGSAL-AQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRY 92 (176)
Q Consensus 14 ~~~l~~l~l~~~~~~~~~~-~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~ 92 (176)
.+.++.|++++|.+.+..+ ..+..+.+|++|++++|.+++..+..|..+++|++|++++|.+... .+..+..+++|++
T Consensus 31 ~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~ 109 (220)
T 2v70_A 31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENV-QHKMFKGLESLKT 109 (220)
T ss_dssp CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CGGGGTTCSSCCE
T ss_pred CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCcc-CHhHhcCCcCCCE
Confidence 4567899999999987754 3468899999999999999988888999999999999999999976 6777999999999
Q ss_pred EEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCc
Q 038633 93 LNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKD 153 (176)
Q Consensus 93 L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 153 (176)
|++++|++.+..|..+..+++|+.|++++|.++. ..+..+..+++|++|++++|.+...
T Consensus 110 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 110 LMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITT--VAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp EECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCC--BCTTTTTTCTTCCEEECCSCCEECS
T ss_pred EECCCCcCCeECHhHcCCCccCCEEECCCCcCCE--ECHHHhcCCCCCCEEEecCcCCcCC
Confidence 9999999997778889999999999999999943 4345688999999999999998754
No 61
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.82 E-value=4.3e-20 Score=145.68 Aligned_cols=159 Identities=21% Similarity=0.200 Sum_probs=116.6
Q ss_pred cccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccch-hhhcCCCCCcEEEccCccccCCcchhhhcCcCC
Q 038633 11 LHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPIS-PSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKE 89 (176)
Q Consensus 11 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~ 89 (176)
+..+++++.|++++|.+.+..+. +..+.+|++|++++|.+++..+ ..+..+++|++|++++|.+... .|..+..+++
T Consensus 369 ~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~ 446 (570)
T 2z63_A 369 DFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA-FNGIFNGLSS 446 (570)
T ss_dssp HHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEEC-CTTTTTTCTT
T ss_pred ccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCccccc-chhhhhcCCc
Confidence 34556677777777666554333 5667777778887777765544 4567778888888888887765 6777777888
Q ss_pred ccEEEeecccCC-CCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCc
Q 038633 90 LRYLNLSGSFFS-GTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLV 168 (176)
Q Consensus 90 L~~L~l~~~~~~-~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~ 168 (176)
|++|++++|.+. +..|..+..+++|+.|++++|++. ...+..+..+++|++|++++|.+.+.++. .++.+++|+
T Consensus 447 L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~ 521 (570)
T 2z63_A 447 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE--QLSPTAFNSLSSLQVLNMASNQLKSVPDG---IFDRLTSLQ 521 (570)
T ss_dssp CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC--EECTTTTTTCTTCCEEECCSSCCSCCCTT---TTTTCTTCC
T ss_pred CcEEECcCCcCccccchhhhhcccCCCEEECCCCccc--cCChhhhhcccCCCEEeCCCCcCCCCCHH---HhhcccCCc
Confidence 888888888875 356777778888888888888773 33344577888888888888888877665 677788888
Q ss_pred EeeCcCCC
Q 038633 169 ELRLPNCN 176 (176)
Q Consensus 169 ~L~l~~n~ 176 (176)
.|++++|.
T Consensus 522 ~L~l~~N~ 529 (570)
T 2z63_A 522 KIWLHTNP 529 (570)
T ss_dssp EEECCSSC
T ss_pred EEEecCCc
Confidence 88888874
No 62
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.82 E-value=1.6e-19 Score=135.65 Aligned_cols=162 Identities=20% Similarity=0.112 Sum_probs=127.1
Q ss_pred ccccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhc-CCCCCcEEEccCccccCCcchhhhcC
Q 038633 8 LSDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLL-QLKDLKYLDLSMNNFKGFKVPEFIGS 86 (176)
Q Consensus 8 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~p~~~~~ 86 (176)
++.-..|. -+.++++++.+... |.. ....++.|++++|.+++..+..+. .+++|++|++++|.+... .+..+..
T Consensus 12 Cp~~C~C~-~~~l~c~~~~l~~i-P~~--~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i-~~~~~~~ 86 (361)
T 2xot_A 12 CPANCLCA-SNILSCSKQQLPNV-PQS--LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFI-SSEAFVP 86 (361)
T ss_dssp CCTTCEEE-TTEEECCSSCCSSC-CSS--CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEE-CTTTTTT
T ss_pred CCCCCEEC-CCEEEeCCCCcCcc-Ccc--CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCcc-ChhhccC
Confidence 44333443 25788888777654 332 234588999999999987777787 999999999999999965 6678999
Q ss_pred cCCccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhcccc
Q 038633 87 LKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRS 166 (176)
Q Consensus 87 l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~ 166 (176)
+++|++|++++|++....+..+..+++|+.|++++|.+. ......+..+++|++|+|++|.+...++..+..+..+++
T Consensus 87 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~--~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~ 164 (361)
T 2xot_A 87 VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV--VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPK 164 (361)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC--EECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTT
T ss_pred CCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCccc--EECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCc
Confidence 999999999999998555567889999999999999994 344456899999999999999999877652222267899
Q ss_pred CcEeeCcCCC
Q 038633 167 LVELRLPNCN 176 (176)
Q Consensus 167 L~~L~l~~n~ 176 (176)
|+.|++++|+
T Consensus 165 L~~L~L~~N~ 174 (361)
T 2xot_A 165 LMLLDLSSNK 174 (361)
T ss_dssp CCEEECCSSC
T ss_pred CCEEECCCCC
Confidence 9999999984
No 63
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.82 E-value=2.3e-19 Score=140.34 Aligned_cols=156 Identities=21% Similarity=0.094 Sum_probs=125.4
Q ss_pred ccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccc--cchhhhcCCCCCcEEEccCccccCCcchhh-hcCcC
Q 038633 12 HLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGG--PISPSLLQLKDLKYLDLSMNNFKGFKVPEF-IGSLK 88 (176)
Q Consensus 12 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~-~~~l~ 88 (176)
..+++++.|++++|.+.+..+..+..+.+|++|++++|.+++ .+|..+..+++|++|++++|.+... +|.. +..++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~-l~~~~~~~l~ 399 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYD-EKKGDCSWTK 399 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCC-GGGCSCCCCT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcc-cccchhccCc
Confidence 467888899999998888777777888889999999998876 5667788899999999999998863 6654 67788
Q ss_pred CccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCc
Q 038633 89 ELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLV 168 (176)
Q Consensus 89 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~ 168 (176)
+|++|++++|++.+..|..+. ++|+.|++++|+++.. +..+..+++|++|++++|.+...++. .+..+++|+
T Consensus 400 ~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~i---p~~~~~l~~L~~L~L~~N~l~~l~~~---~~~~l~~L~ 471 (520)
T 2z7x_B 400 SLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSI---PKQVVKLEALQELNVASNQLKSVPDG---IFDRLTSLQ 471 (520)
T ss_dssp TCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCC---CGGGGGCTTCCEEECCSSCCCCCCTT---TTTTCTTCC
T ss_pred cCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccccc---chhhhcCCCCCEEECCCCcCCccCHH---HhccCCccc
Confidence 999999999988766665543 6899999999988532 22355889999999999999866553 477889999
Q ss_pred EeeCcCCC
Q 038633 169 ELRLPNCN 176 (176)
Q Consensus 169 ~L~l~~n~ 176 (176)
+|++++|.
T Consensus 472 ~L~l~~N~ 479 (520)
T 2z7x_B 472 KIWLHTNP 479 (520)
T ss_dssp EEECCSSC
T ss_pred EEECcCCC
Confidence 99999884
No 64
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.82 E-value=6.6e-20 Score=150.99 Aligned_cols=160 Identities=19% Similarity=0.052 Sum_probs=127.9
Q ss_pred cccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccc-hhhhcCCCCCcEEEccCccccCCcchhhhcCcCCcc
Q 038633 13 LLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPI-SPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELR 91 (176)
Q Consensus 13 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~ 91 (176)
..++++.|++++|.+.+..+..+..+.+|++|++++|...+.+ |..|.++++|++|++++|.+... .|..+..+++|+
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~ 100 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFL-HPDAFQGLFHLF 100 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEE-CTTSSCSCSSCC
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCccc-CHhHccCCcccC
Confidence 5578999999999998888888999999999999999655555 78899999999999999999976 788999999999
Q ss_pred EEEeecccCCCCcchh--ccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcE
Q 038633 92 YLNLSGSFFSGTIPQS--LGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVE 169 (176)
Q Consensus 92 ~L~l~~~~~~~~~p~~--~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~ 169 (176)
+|++++|.+.+..|.. ++.+++|++|++++|.+.... ....+..+++|++|++++|.+.+..+..+..+.. ++|+.
T Consensus 101 ~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~-~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~-~~L~~ 178 (844)
T 3j0a_A 101 ELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY-LHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG-KTLSF 178 (844)
T ss_dssp CEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCC-CCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHH-CSSCC
T ss_pred EeeCcCCCCCcccccCccccccCCCCEEECCCCcccccc-cchhHhhCCCCCEEECCCCcCCeeCHHHcccccC-Cccce
Confidence 9999999998656654 889999999999999884322 2234789999999999999998776652222211 45555
Q ss_pred eeCcCC
Q 038633 170 LRLPNC 175 (176)
Q Consensus 170 L~l~~n 175 (176)
|++++|
T Consensus 179 L~L~~n 184 (844)
T 3j0a_A 179 FSLAAN 184 (844)
T ss_dssp CEECCS
T ss_pred EECCCC
Confidence 555544
No 65
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.82 E-value=1.6e-20 Score=150.51 Aligned_cols=159 Identities=12% Similarity=0.055 Sum_probs=126.8
Q ss_pred cccccccccceeeccCccccCC-----------------CCcCcc--cCCcceEeecCCCCccccchhhhcCCCCCcEEE
Q 038633 9 SDLHLLSRIFALSLLRCCSVGS-----------------ALAQPF--RDSFDTYEDDAGHELGGPISPSLLQLKDLKYLD 69 (176)
Q Consensus 9 ~~~~~~~~l~~l~l~~~~~~~~-----------------~~~~~~--~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 69 (176)
..+..+++|+.|++++|.+.+. .|.... .+.+|++|++++|.+.+.+|..+.++++|++|+
T Consensus 200 ~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 279 (636)
T 4eco_A 200 KAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLIN 279 (636)
T ss_dssp GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEE
T ss_pred HHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEE
Confidence 3477789999999999998874 677777 889999999999999899999999999999999
Q ss_pred ccCcc-ccC-CcchhhhcCc------CCccEEEeecccCCCCcch--hccCCCCCCEEEccCCccCcccccccccCCCCC
Q 038633 70 LSMNN-FKG-FKVPEFIGSL------KELRYLNLSGSFFSGTIPQ--SLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPS 139 (176)
Q Consensus 70 l~~~~-~~~-~~~p~~~~~l------~~L~~L~l~~~~~~~~~p~--~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~ 139 (176)
+++|. +++ . +|..++.+ ++|++|++++|++. .+|. .++.+++|+.|++++|.+. ...+ .+..+++
T Consensus 280 Ls~n~~l~~~~-lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~--g~ip-~~~~l~~ 354 (636)
T 4eco_A 280 VACNRGISGEQ-LKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLE--GKLP-AFGSEIK 354 (636)
T ss_dssp CTTCTTSCHHH-HHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCE--EECC-CCEEEEE
T ss_pred CcCCCCCcccc-chHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCc--cchh-hhCCCCC
Confidence 99998 876 5 88888776 89999999999998 8888 8889999999999999884 1222 4666777
Q ss_pred ccEEeccCCCCCCchhhhHHHhhcccc-CcEeeCcCCC
Q 038633 140 LKYLNLGGADLSKDAAYWLESISMLRS-LVELRLPNCN 176 (176)
Q Consensus 140 L~~L~l~~n~l~~~~~~~~~~l~~~~~-L~~L~l~~n~ 176 (176)
|++|++++|.+. ..|. .++.+++ |++|++++|+
T Consensus 355 L~~L~L~~N~l~-~lp~---~l~~l~~~L~~L~Ls~N~ 388 (636)
T 4eco_A 355 LASLNLAYNQIT-EIPA---NFCGFTEQVENLSFAHNK 388 (636)
T ss_dssp ESEEECCSSEEE-ECCT---TSEEECTTCCEEECCSSC
T ss_pred CCEEECCCCccc-cccH---hhhhhcccCcEEEccCCc
Confidence 777777777776 3333 5666666 7777777663
No 66
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.82 E-value=6.2e-20 Score=130.38 Aligned_cols=131 Identities=14% Similarity=0.075 Sum_probs=104.9
Q ss_pred CCcceEeecCCCCccccchhhhcCCCCCcEEEccCcc-ccCCcchhhhcCcCCccEEEeec-ccCCCCcchhccCCCCCC
Q 038633 38 DSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNN-FKGFKVPEFIGSLKELRYLNLSG-SFFSGTIPQSLGNLTNLL 115 (176)
Q Consensus 38 ~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~p~~~~~l~~L~~L~l~~-~~~~~~~p~~~~~l~~L~ 115 (176)
...+++|++++|.+++..+..|..+++|++|++++|. +... .+..+..+++|++|++++ |++....+..+..+++|+
T Consensus 30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i-~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQL-ESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108 (239)
T ss_dssp CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEE-CTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCccee-CHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence 3489999999999988777789999999999999997 8754 555788999999999998 999844446788999999
Q ss_pred EEEccCCccCcccccccccCCCCCcc---EEeccCC-CCCCchhhhHHHhhccccCc-EeeCcCCC
Q 038633 116 YLDLNNFLDQSNQIGLGWLSGLPSLK---YLNLGGA-DLSKDAAYWLESISMLRSLV-ELRLPNCN 176 (176)
Q Consensus 116 ~L~l~~n~~~~~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~~~~~~~l~~~~~L~-~L~l~~n~ 176 (176)
.|++++|+++..+. +..+++|+ +|++++| .+.+.++. .++.+++|+ +|++++|+
T Consensus 109 ~L~l~~n~l~~lp~----~~~l~~L~~L~~L~l~~N~~l~~i~~~---~~~~l~~L~~~L~l~~n~ 167 (239)
T 2xwt_C 109 FLGIFNTGLKMFPD----LTKVYSTDIFFILEITDNPYMTSIPVN---AFQGLCNETLTLKLYNNG 167 (239)
T ss_dssp EEEEEEECCCSCCC----CTTCCBCCSEEEEEEESCTTCCEECTT---TTTTTBSSEEEEECCSCC
T ss_pred EEeCCCCCCccccc----cccccccccccEEECCCCcchhhcCcc---cccchhcceeEEEcCCCC
Confidence 99999998854322 56666666 8888888 77666554 566777888 88877763
No 67
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.82 E-value=1.6e-19 Score=145.40 Aligned_cols=161 Identities=19% Similarity=0.029 Sum_probs=130.7
Q ss_pred ccccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCc
Q 038633 8 LSDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSL 87 (176)
Q Consensus 8 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l 87 (176)
...+..+++++.|++++|.+.+..+..+..+.+|++|++++|.+++..+..|.++++|++|++++|.+... .|..+..+
T Consensus 42 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l 120 (680)
T 1ziw_A 42 AANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKI-KNNPFVKQ 120 (680)
T ss_dssp GGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CSCTTTTC
T ss_pred HHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCcc-ChhHcccc
Confidence 34577889999999999999888787788999999999999999876666799999999999999999865 66789999
Q ss_pred CCccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccC
Q 038633 88 KELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSL 167 (176)
Q Consensus 88 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L 167 (176)
++|++|++++|.+.+..|..++.+++|+.|++++|.++...........+++|++|++++|.+.+.++. .++.++.|
T Consensus 121 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~---~~~~l~~L 197 (680)
T 1ziw_A 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPG---CFHAIGRL 197 (680)
T ss_dssp TTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTT---GGGGSSEE
T ss_pred CCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChh---hhhhhhhh
Confidence 999999999999987777888899999999999998843322111133568999999999999887765 44444444
Q ss_pred cEeeC
Q 038633 168 VELRL 172 (176)
Q Consensus 168 ~~L~l 172 (176)
+.+++
T Consensus 198 ~~L~l 202 (680)
T 1ziw_A 198 FGLFL 202 (680)
T ss_dssp CEEEC
T ss_pred hhhhc
Confidence 33333
No 68
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.81 E-value=4.6e-19 Score=131.59 Aligned_cols=156 Identities=21% Similarity=0.190 Sum_probs=91.0
Q ss_pred cccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccC--CcchhhhcCc-
Q 038633 11 LHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKG--FKVPEFIGSL- 87 (176)
Q Consensus 11 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~p~~~~~l- 87 (176)
+..+++|+.|++++|.+.......+ .+|++|++++|.+++..+..+..+++|++|++++|.+.. . .|..+..+
T Consensus 98 ~~~l~~L~~L~L~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~~l~ 173 (332)
T 2ft3_A 98 FSPLRKLQKLYISKNHLVEIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGF-EPGAFDGLK 173 (332)
T ss_dssp STTCTTCCEEECCSSCCCSCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGS-CTTSSCSCC
T ss_pred hhCcCCCCEEECCCCcCCccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCC-CcccccCCc
Confidence 3344444555554444432211111 345555555555544444456666777777777666642 1 22222222
Q ss_pred -------------------CCccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCC
Q 038633 88 -------------------KELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGA 148 (176)
Q Consensus 88 -------------------~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n 148 (176)
++|++|++++|.+.+..+..+..+++|+.|++++|.+.. .....+..+++|++|++++|
T Consensus 174 L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N 251 (332)
T 2ft3_A 174 LNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM--IENGSLSFLPTLRELHLDNN 251 (332)
T ss_dssp CSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCC--CCTTGGGGCTTCCEEECCSS
T ss_pred cCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCc--CChhHhhCCCCCCEEECCCC
Confidence 345555556666654444567777888888888887733 33334677888888888888
Q ss_pred CCCCchhhhHHHhhccccCcEeeCcCCC
Q 038633 149 DLSKDAAYWLESISMLRSLVELRLPNCN 176 (176)
Q Consensus 149 ~l~~~~~~~~~~l~~~~~L~~L~l~~n~ 176 (176)
.+... |. .+..+++|+.|++++|+
T Consensus 252 ~l~~l-p~---~l~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 252 KLSRV-PA---GLPDLKLLQVVYLHTNN 275 (332)
T ss_dssp CCCBC-CT---TGGGCTTCCEEECCSSC
T ss_pred cCeec-Ch---hhhcCccCCEEECCCCC
Confidence 88744 33 56778888888888774
No 69
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.81 E-value=8.2e-20 Score=150.19 Aligned_cols=158 Identities=11% Similarity=0.050 Sum_probs=135.2
Q ss_pred cccccccccceeeccCccccCC-----------------CCcCcc--cCCcceEeecCCCCccccchhhhcCCCCCcEEE
Q 038633 9 SDLHLLSRIFALSLLRCCSVGS-----------------ALAQPF--RDSFDTYEDDAGHELGGPISPSLLQLKDLKYLD 69 (176)
Q Consensus 9 ~~~~~~~~l~~l~l~~~~~~~~-----------------~~~~~~--~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 69 (176)
..+..+++|+.|++++|.+.+. .|.... .+.+|++|++++|.+.+.+|..+.++++|++|+
T Consensus 442 ~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~ 521 (876)
T 4ecn_A 442 KAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLN 521 (876)
T ss_dssp GGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEE
T ss_pred HHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEE
Confidence 3577889999999999998872 666655 899999999999999999999999999999999
Q ss_pred ccCcc-ccC-CcchhhhcCcC-------CccEEEeecccCCCCcch--hccCCCCCCEEEccCCccCcccccccccCCCC
Q 038633 70 LSMNN-FKG-FKVPEFIGSLK-------ELRYLNLSGSFFSGTIPQ--SLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLP 138 (176)
Q Consensus 70 l~~~~-~~~-~~~p~~~~~l~-------~L~~L~l~~~~~~~~~p~--~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~ 138 (176)
+++|. +++ . +|..++.++ +|++|++++|++. .+|. .++.+++|+.|++++|.+...+ .+..++
T Consensus 522 Ls~N~~lsg~~-iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp----~~~~L~ 595 (876)
T 4ecn_A 522 IACNRGISAAQ-LKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLE----AFGTNV 595 (876)
T ss_dssp CTTCTTSCHHH-HHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCC----CCCTTS
T ss_pred CcCCCCccccc-chHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccch----hhcCCC
Confidence 99998 886 5 887777665 9999999999998 8888 8999999999999999985222 588899
Q ss_pred CccEEeccCCCCCCchhhhHHHhhcccc-CcEeeCcCCC
Q 038633 139 SLKYLNLGGADLSKDAAYWLESISMLRS-LVELRLPNCN 176 (176)
Q Consensus 139 ~L~~L~l~~n~l~~~~~~~~~~l~~~~~-L~~L~l~~n~ 176 (176)
+|++|++++|.+. ..|. .+..+++ |+.|++++|+
T Consensus 596 ~L~~L~Ls~N~l~-~lp~---~l~~l~~~L~~L~Ls~N~ 630 (876)
T 4ecn_A 596 KLTDLKLDYNQIE-EIPE---DFCAFTDQVEGLGFSHNK 630 (876)
T ss_dssp EESEEECCSSCCS-CCCT---TSCEECTTCCEEECCSSC
T ss_pred cceEEECcCCccc-cchH---HHhhccccCCEEECcCCC
Confidence 9999999999998 4444 6778888 9999998874
No 70
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.81 E-value=3.2e-20 Score=152.60 Aligned_cols=167 Identities=17% Similarity=0.087 Sum_probs=113.4
Q ss_pred eeecccccccccccceeeccCccccCCCCcCcccCCcceEeec-CCCCcccc----------------------------
Q 038633 4 FVFALSDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDD-AGHELGGP---------------------------- 54 (176)
Q Consensus 4 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l-~~n~l~~~---------------------------- 54 (176)
.++.|.. ...++.|+|+++.+.+..+.....++.|++|++ ++|.+.+.
T Consensus 315 ~GV~C~~---~~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~ 391 (876)
T 4ecn_A 315 PGVDLDN---NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMF 391 (876)
T ss_dssp TTEEECT---TSCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHH
T ss_pred CceEecC---CCCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhh
Confidence 4444433 256778888888887777777788888888888 55543322
Q ss_pred ------------------------------------------------chhhhcCCCCCcEEEccCccccC---------
Q 038633 55 ------------------------------------------------ISPSLLQLKDLKYLDLSMNNFKG--------- 77 (176)
Q Consensus 55 ------------------------------------------------~~~~l~~l~~L~~L~l~~~~~~~--------- 77 (176)
+|..+.++++|++|++++|.+++
T Consensus 392 l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~ 471 (876)
T 4ecn_A 392 LDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWED 471 (876)
T ss_dssp TCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSC
T ss_pred hccCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccc
Confidence 67777888888888888888875
Q ss_pred --------Ccchhhhc--CcCCccEEEeecccCCCCcchhccCCCCCCEEEccCCc-cCc--ccccc----cccCCCCCc
Q 038633 78 --------FKVPEFIG--SLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFL-DQS--NQIGL----GWLSGLPSL 140 (176)
Q Consensus 78 --------~~~p~~~~--~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~-~~~--~~~~~----~~~~~l~~L 140 (176)
. +|..++ .+++|++|++++|.+.+.+|..++.+++|+.|++++|+ ++. .+... ..+..+++|
T Consensus 472 ~s~n~~~g~-iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L 550 (876)
T 4ecn_A 472 ANSDYAKQY-ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKI 550 (876)
T ss_dssp TTSHHHHHH-TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTC
T ss_pred ccccccccc-CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCc
Confidence 2 677766 78888888888888777788778888888888888887 531 11100 023445577
Q ss_pred cEEeccCCCCCCchhhhHHHhhccccCcEeeCcCCC
Q 038633 141 KYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN 176 (176)
Q Consensus 141 ~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n~ 176 (176)
++|++++|.+...+. ...++.+++|++|++++|+
T Consensus 551 ~~L~Ls~N~L~~ip~--~~~l~~L~~L~~L~Ls~N~ 584 (876)
T 4ecn_A 551 QIFYMGYNNLEEFPA--SASLQKMVKLGLLDCVHNK 584 (876)
T ss_dssp CEEECCSSCCCBCCC--HHHHTTCTTCCEEECTTSC
T ss_pred cEEEeeCCcCCccCC--hhhhhcCCCCCEEECCCCC
Confidence 777777777763332 0145667777777777663
No 71
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=8.4e-19 Score=128.14 Aligned_cols=148 Identities=23% Similarity=0.168 Sum_probs=83.6
Q ss_pred ccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCC
Q 038633 10 DLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKE 89 (176)
Q Consensus 10 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~ 89 (176)
.+..+++++.|++++|.+.+..+ ...+.+|++|++++|.+++ . ..+..+++|++|++++|.+.. + +.+..+++
T Consensus 63 ~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~i~~--~-~~l~~l~~ 135 (291)
T 1h6t_A 63 GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSLSLEHNGISD--I-NGLVHLPQ 135 (291)
T ss_dssp TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEEECTTSCCCC--C-GGGGGCTT
T ss_pred hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCCEEECCCCcCCC--C-hhhcCCCC
Confidence 34445556666666655554332 4555566666666666543 2 235566666666666666552 2 34555666
Q ss_pred ccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcE
Q 038633 90 LRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVE 169 (176)
Q Consensus 90 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~ 169 (176)
|++|++++|++.+ . ..+..+++|+.|++++|.+..... +..+++|++|++++|.+.+. + .+..+++|+.
T Consensus 136 L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~N~l~~~~~----l~~l~~L~~L~L~~N~i~~l-~----~l~~l~~L~~ 204 (291)
T 1h6t_A 136 LESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYLSKNHISDL-R----ALAGLKNLDV 204 (291)
T ss_dssp CCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCBC-G----GGTTCTTCSE
T ss_pred CCEEEccCCcCCc-c-hhhccCCCCCEEEccCCccccchh----hcCCCccCEEECCCCcCCCC-h----hhccCCCCCE
Confidence 6666666666652 2 345566666666666666532211 55666666666666666543 2 3455666666
Q ss_pred eeCcCC
Q 038633 170 LRLPNC 175 (176)
Q Consensus 170 L~l~~n 175 (176)
|++++|
T Consensus 205 L~l~~n 210 (291)
T 1h6t_A 205 LELFSQ 210 (291)
T ss_dssp EEEEEE
T ss_pred EECcCC
Confidence 666655
No 72
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.81 E-value=4.1e-19 Score=141.34 Aligned_cols=132 Identities=22% Similarity=0.092 Sum_probs=114.2
Q ss_pred CcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCCCCEEE
Q 038633 39 SFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLD 118 (176)
Q Consensus 39 ~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 118 (176)
..+++|+|++|.|++..+..|.++++|++|++++|.+... .|.+|..+++|++|++++|++....+..|+++++|++|+
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i-~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCc-ChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 5789999999999988888999999999999999999965 667899999999999999999844446789999999999
Q ss_pred ccCCccCcccccccccCCCCCccEEeccCCCCCCch-hhhHHHhhccccCcEeeCcCCC
Q 038633 119 LNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDA-AYWLESISMLRSLVELRLPNCN 176 (176)
Q Consensus 119 l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~~~~L~~L~l~~n~ 176 (176)
+++|.++. .....+.++++|++|++++|.+.... +. .++.++.|++|++++|+
T Consensus 131 Ls~N~l~~--l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~---~~~~l~~L~~L~L~~N~ 184 (635)
T 4g8a_A 131 AVETNLAS--LENFPIGHLKTLKELNVAHNLIQSFKLPE---YFSNLTNLEHLDLSSNK 184 (635)
T ss_dssp CTTSCCCC--STTCCCTTCTTCCEEECCSSCCCCCCCCG---GGGGCTTCCEEECCSSC
T ss_pred CCCCcCCC--CChhhhhcCcccCeeccccCccccCCCch---hhccchhhhhhcccCcc
Confidence 99999843 33345889999999999999997643 44 67889999999999984
No 73
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=1.2e-18 Score=127.42 Aligned_cols=149 Identities=25% Similarity=0.145 Sum_probs=126.6
Q ss_pred ccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCC
Q 038633 10 DLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKE 89 (176)
Q Consensus 10 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~ 89 (176)
+...+++++.|++++|.+... .....+.+|++|++++|.+++..+ +..+++|++|++++|.+.. +| .+..+++
T Consensus 41 ~~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~--~~-~l~~l~~ 113 (291)
T 1h6t_A 41 TQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD--LS-SLKDLKK 113 (291)
T ss_dssp CHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC--GG-GGTTCTT
T ss_pred chhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC--Ch-hhccCCC
Confidence 445678999999999988765 346778999999999999986544 8899999999999999983 43 4889999
Q ss_pred ccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcE
Q 038633 90 LRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVE 169 (176)
Q Consensus 90 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~ 169 (176)
|++|++++|++.+ . +.+..+++|+.|++++|.++.. ..+..+++|++|++++|.+.+.++ +..+++|++
T Consensus 114 L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~----~~l~~l~~L~~L~L~~N~l~~~~~-----l~~l~~L~~ 182 (291)
T 1h6t_A 114 LKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI----TVLSRLTKLDTLSLEDNQISDIVP-----LAGLTKLQN 182 (291)
T ss_dssp CCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC----GGGGGCTTCSEEECCSSCCCCCGG-----GTTCTTCCE
T ss_pred CCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc----hhhccCCCCCEEEccCCccccchh-----hcCCCccCE
Confidence 9999999999974 3 4688899999999999998543 347899999999999999987653 678999999
Q ss_pred eeCcCCC
Q 038633 170 LRLPNCN 176 (176)
Q Consensus 170 L~l~~n~ 176 (176)
|++++|+
T Consensus 183 L~L~~N~ 189 (291)
T 1h6t_A 183 LYLSKNH 189 (291)
T ss_dssp EECCSSC
T ss_pred EECCCCc
Confidence 9999984
No 74
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.80 E-value=3.9e-19 Score=128.18 Aligned_cols=148 Identities=20% Similarity=0.106 Sum_probs=122.8
Q ss_pred cccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcC
Q 038633 9 SDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLK 88 (176)
Q Consensus 9 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~ 88 (176)
..+..+++++.|++++|.+.... ....+.+|++|++++|.+++..+ +..+++|++|++++|.+.. +|... . +
T Consensus 35 ~~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~--l~~~~-~-~ 106 (263)
T 1xeu_A 35 VSQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN--LNGIP-S-A 106 (263)
T ss_dssp ECHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC--CTTCC-C-S
T ss_pred cchhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC--cCccc-c-C
Confidence 35667889999999999887643 56788999999999999976544 8899999999999999984 44433 3 8
Q ss_pred CccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCc
Q 038633 89 ELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLV 168 (176)
Q Consensus 89 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~ 168 (176)
+|++|++++|++. ..+ .+..+++|+.|++++|+++... .+..+++|++|++++|.+.+. . .+..+++|+
T Consensus 107 ~L~~L~L~~N~l~-~~~-~l~~l~~L~~L~Ls~N~i~~~~----~l~~l~~L~~L~L~~N~i~~~-~----~l~~l~~L~ 175 (263)
T 1xeu_A 107 CLSRLFLDNNELR-DTD-SLIHLKNLEILSIRNNKLKSIV----MLGFLSKLEVLDLHGNEITNT-G----GLTRLKKVN 175 (263)
T ss_dssp SCCEEECCSSCCS-BSG-GGTTCTTCCEEECTTSCCCBCG----GGGGCTTCCEEECTTSCCCBC-T----TSTTCCCCC
T ss_pred cccEEEccCCccC-CCh-hhcCcccccEEECCCCcCCCCh----HHccCCCCCEEECCCCcCcch-H----HhccCCCCC
Confidence 9999999999997 444 5889999999999999985432 378899999999999999876 2 678899999
Q ss_pred EeeCcCC
Q 038633 169 ELRLPNC 175 (176)
Q Consensus 169 ~L~l~~n 175 (176)
.|++++|
T Consensus 176 ~L~l~~N 182 (263)
T 1xeu_A 176 WIDLTGQ 182 (263)
T ss_dssp EEEEEEE
T ss_pred EEeCCCC
Confidence 9999887
No 75
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.80 E-value=5.5e-20 Score=135.59 Aligned_cols=158 Identities=18% Similarity=0.134 Sum_probs=122.8
Q ss_pred cceeeccCccccC-CCCcCcc-------cCCcceEeecCCCCccccchhhh--cCCCCCcEEEccCccccCCcchhhhcC
Q 038633 17 IFALSLLRCCSVG-SALAQPF-------RDSFDTYEDDAGHELGGPISPSL--LQLKDLKYLDLSMNNFKGFKVPEFIGS 86 (176)
Q Consensus 17 l~~l~l~~~~~~~-~~~~~~~-------~~~~l~~L~l~~n~l~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~p~~~~~ 86 (176)
++.|++++|.+.. ..+.... .+.+|++|++++|.+++..|..+ ..+++|++|++++|.+.+ .|..+..
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~ 142 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT--RDAWLAE 142 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSS--SSSHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcc--hhHHHHH
Confidence 6677777777743 2222222 57899999999999998888876 899999999999999994 4666666
Q ss_pred c-----CCccEEEeecccCCCCcchhccCCCCCCEEEccCCccCccccccc--ccCCCCCccEEeccCCCCCCchhhhHH
Q 038633 87 L-----KELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLG--WLSGLPSLKYLNLGGADLSKDAAYWLE 159 (176)
Q Consensus 87 l-----~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~ 159 (176)
+ ++|++|++++|++.+..|..++.+++|+.|++++|++........ .+..+++|++|++++|.+.+.+.....
T Consensus 143 l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 222 (312)
T 1wwl_A 143 LQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSA 222 (312)
T ss_dssp HHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHH
T ss_pred HHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHH
Confidence 6 899999999999986666889999999999999998632111111 237899999999999999854332223
Q ss_pred HhhccccCcEeeCcCCC
Q 038633 160 SISMLRSLVELRLPNCN 176 (176)
Q Consensus 160 ~l~~~~~L~~L~l~~n~ 176 (176)
.+..+++|++|++++|+
T Consensus 223 ~~~~l~~L~~L~Ls~N~ 239 (312)
T 1wwl_A 223 LAAARVQLQGLDLSHNS 239 (312)
T ss_dssp HHHTTCCCSEEECTTSC
T ss_pred HHhcCCCCCEEECCCCc
Confidence 45678999999999984
No 76
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.80 E-value=5e-19 Score=137.81 Aligned_cols=103 Identities=17% Similarity=0.083 Sum_probs=64.0
Q ss_pred CcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhcc-CCCCCCEEEccCCccCcccccccccCCCCCccEE
Q 038633 65 LKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLG-NLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYL 143 (176)
Q Consensus 65 L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L 143 (176)
|++|++++|.+.+. .|..+..+++|++|++++|.+.+..|..+. .+++|+.|++++|.++..+. ...+++|++|
T Consensus 122 L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~----~~~l~~L~~L 196 (487)
T 3oja_A 122 KKNIYLANNKITML-RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG----QVVFAKLKTL 196 (487)
T ss_dssp CEEEECCSSCCCSG-GGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC----CCCCTTCCEE
T ss_pred CCEEECCCCCCCCC-CchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc----cccCCCCCEE
Confidence 34444444444433 455566677777777777777655555554 56777777777777643321 3356777777
Q ss_pred eccCCCCCCchhhhHHHhhccccCcEeeCcCCC
Q 038633 144 NLGGADLSKDAAYWLESISMLRSLVELRLPNCN 176 (176)
Q Consensus 144 ~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n~ 176 (176)
++++|.+.+.++ .+..+++|+.|++++|+
T Consensus 197 ~Ls~N~l~~~~~----~~~~l~~L~~L~Ls~N~ 225 (487)
T 3oja_A 197 DLSSNKLAFMGP----EFQSAAGVTWISLRNNK 225 (487)
T ss_dssp ECCSSCCCEECG----GGGGGTTCSEEECTTSC
T ss_pred ECCCCCCCCCCH----hHcCCCCccEEEecCCc
Confidence 777777776554 45566777777777663
No 77
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.80 E-value=9.2e-19 Score=138.32 Aligned_cols=156 Identities=19% Similarity=0.109 Sum_probs=125.2
Q ss_pred ccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccc--cchhhhcCCCCCcEEEccCccccCCcchh-hhcCcC
Q 038633 12 HLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGG--PISPSLLQLKDLKYLDLSMNNFKGFKVPE-FIGSLK 88 (176)
Q Consensus 12 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~p~-~~~~l~ 88 (176)
..+++++.|++++|.+.+..+..+..+++|++|++++|.+++ ..|..+..+++|++|++++|.+... +|. .+..++
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~~l~ 428 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSH-AYDRTCAWAE 428 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSC-CSSCCCCCCT
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCc-cChhhhcCcc
Confidence 567888999999998888777778888899999999998876 4456788899999999999998863 554 467788
Q ss_pred CccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCc
Q 038633 89 ELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLV 168 (176)
Q Consensus 89 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~ 168 (176)
+|++|++++|++.+..|..+. ++|+.|++++|.++..+ ..+..+++|++|++++|.+.+.++. .+..+++|+
T Consensus 429 ~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip---~~~~~l~~L~~L~L~~N~l~~l~~~---~~~~l~~L~ 500 (562)
T 3a79_B 429 SILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIP---KDVTHLQALQELNVASNQLKSVPDG---VFDRLTSLQ 500 (562)
T ss_dssp TCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCC---TTTTSSCCCSEEECCSSCCCCCCTT---STTTCTTCC
T ss_pred cCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccC---hhhcCCCCCCEEECCCCCCCCCCHH---HHhcCCCCC
Confidence 999999999998755555432 68999999999885322 2245889999999999999866553 478899999
Q ss_pred EeeCcCCC
Q 038633 169 ELRLPNCN 176 (176)
Q Consensus 169 ~L~l~~n~ 176 (176)
.|++++|.
T Consensus 501 ~L~l~~N~ 508 (562)
T 3a79_B 501 YIWLHDNP 508 (562)
T ss_dssp CEECCSCC
T ss_pred EEEecCCC
Confidence 99999984
No 78
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.80 E-value=1.7e-18 Score=127.48 Aligned_cols=148 Identities=21% Similarity=0.229 Sum_probs=125.9
Q ss_pred ccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCC
Q 038633 10 DLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKE 89 (176)
Q Consensus 10 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~ 89 (176)
.+..+++|+.|++++|.+.+. ..+..+.+|++|++++|.+++. + .+..+++|++|++++|.+... +. +..+++
T Consensus 80 ~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~--~~-l~~l~~ 152 (308)
T 1h6u_A 80 PLKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNI--SP-LAGLTN 152 (308)
T ss_dssp GGTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCC--GG-GGGCTT
T ss_pred hHccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcC--cc-ccCCCC
Confidence 377889999999999998764 3577889999999999999764 3 388999999999999999854 43 888999
Q ss_pred ccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcE
Q 038633 90 LRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVE 169 (176)
Q Consensus 90 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~ 169 (176)
|++|++++|++. ..+. +..+++|+.|++++|.++.... +..+++|++|++++|.+.+.+ .+..+++|+.
T Consensus 153 L~~L~l~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~~~~~----l~~l~~L~~L~L~~N~l~~~~-----~l~~l~~L~~ 221 (308)
T 1h6u_A 153 LQYLSIGNAQVS-DLTP-LANLSKLTTLKADDNKISDISP----LASLPNLIEVHLKNNQISDVS-----PLANTSNLFI 221 (308)
T ss_dssp CCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECTTSCCCBCG-----GGTTCTTCCE
T ss_pred ccEEEccCCcCC-CChh-hcCCCCCCEEECCCCccCcChh----hcCCCCCCEEEccCCccCccc-----cccCCCCCCE
Confidence 999999999998 4444 8899999999999999854332 778999999999999998765 3678999999
Q ss_pred eeCcCC
Q 038633 170 LRLPNC 175 (176)
Q Consensus 170 L~l~~n 175 (176)
|++++|
T Consensus 222 L~l~~N 227 (308)
T 1h6u_A 222 VTLTNQ 227 (308)
T ss_dssp EEEEEE
T ss_pred EEccCC
Confidence 999887
No 79
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.80 E-value=3.2e-19 Score=131.75 Aligned_cols=150 Identities=17% Similarity=0.042 Sum_probs=83.2
Q ss_pred cccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccc-------------------
Q 038633 15 SRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNF------------------- 75 (176)
Q Consensus 15 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~------------------- 75 (176)
++++.|++++|.+.+..+..+..+.+|++|++++|.+++..+ +..+++|++|++++|.+
T Consensus 34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l 111 (317)
T 3o53_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNI 111 (317)
T ss_dssp GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCC
T ss_pred CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECCCCcc
Confidence 455555555555554444444455555555555555543332 44444454444444443
Q ss_pred ---------------------cCCcchhhhcCcCCccEEEeecccCCCCcchhc-cCCCCCCEEEccCCccCcccccccc
Q 038633 76 ---------------------KGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSL-GNLTNLLYLDLNNFLDQSNQIGLGW 133 (176)
Q Consensus 76 ---------------------~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~-~~l~~L~~L~l~~n~~~~~~~~~~~ 133 (176)
... .+..+..+++|++|++++|.+.+..+..+ ..+++|+.|++++|.++....
T Consensus 112 ~~~~~~~~~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---- 186 (317)
T 3o53_A 112 SRVSCSRGQGKKNIYLANNKITML-RDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG---- 186 (317)
T ss_dssp SEEEECCCSSCEEEECCSSCCCSG-GGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC----
T ss_pred CCcCccccCCCCEEECCCCCCCCc-cchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc----
Confidence 322 23355566777777777777764444444 356677777777776643221
Q ss_pred cCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCC
Q 038633 134 LSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNC 175 (176)
Q Consensus 134 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n 175 (176)
...+++|++|++++|.+.+.++ .+..+++|++|++++|
T Consensus 187 ~~~l~~L~~L~Ls~N~l~~l~~----~~~~l~~L~~L~L~~N 224 (317)
T 3o53_A 187 QVVFAKLKTLDLSSNKLAFMGP----EFQSAAGVTWISLRNN 224 (317)
T ss_dssp CCCCTTCCEEECCSSCCCEECG----GGGGGTTCSEEECTTS
T ss_pred ccccccCCEEECCCCcCCcchh----hhcccCcccEEECcCC
Confidence 2346677777777777765443 3555666777766665
No 80
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.79 E-value=3.1e-19 Score=131.39 Aligned_cols=152 Identities=17% Similarity=0.064 Sum_probs=105.8
Q ss_pred cccccceeeccCccccCCCCcCcccCCcceEeecCCCCcccc--ch--hhhcCCCCCcEEEccCccccCCcchh----hh
Q 038633 13 LLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGP--IS--PSLLQLKDLKYLDLSMNNFKGFKVPE----FI 84 (176)
Q Consensus 13 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~--~~--~~l~~l~~L~~L~l~~~~~~~~~~p~----~~ 84 (176)
.+++++.|++++|.+....+..+..+.+|++|++++|.+.+. .+ ..+..+++|++|++++|.++ ..+. .+
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~--~l~~~~~~l~ 220 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME--TPTGVCAALA 220 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC--CHHHHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC--chHHHHHHHH
Confidence 466777777777777666666667777788888888776542 22 22356777888888888776 2333 24
Q ss_pred cCcCCccEEEeecccCCCCcchhccCC---CCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHh
Q 038633 85 GSLKELRYLNLSGSFFSGTIPQSLGNL---TNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESI 161 (176)
Q Consensus 85 ~~l~~L~~L~l~~~~~~~~~p~~~~~l---~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 161 (176)
..+++|++|++++|++.+..|..++.+ ++|++|++++|+++..+. .+ .++|++|++++|.+.+.+ .+
T Consensus 221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~---~~--~~~L~~L~Ls~N~l~~~~-----~~ 290 (310)
T 4glp_A 221 AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPK---GL--PAKLRVLDLSSNRLNRAP-----QP 290 (310)
T ss_dssp HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCS---CC--CSCCSCEECCSCCCCSCC-----CT
T ss_pred hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhh---hh--cCCCCEEECCCCcCCCCc-----hh
Confidence 567888888888888876657666655 688888888888853222 22 268888888888888653 24
Q ss_pred hccccCcEeeCcCCC
Q 038633 162 SMLRSLVELRLPNCN 176 (176)
Q Consensus 162 ~~~~~L~~L~l~~n~ 176 (176)
..+++|+.|++++|+
T Consensus 291 ~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 291 DELPEVDNLTLDGNP 305 (310)
T ss_dssp TSCCCCSCEECSSTT
T ss_pred hhCCCccEEECcCCC
Confidence 567888899988874
No 81
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.79 E-value=4.7e-18 Score=126.68 Aligned_cols=149 Identities=19% Similarity=0.203 Sum_probs=80.9
Q ss_pred cccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCc
Q 038633 11 LHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKEL 90 (176)
Q Consensus 11 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L 90 (176)
+..+++++.|++++|.+.+..+ ...+..+++|++++|.+++..+ +..+++|++|++++|.+.. .+. +..+++|
T Consensus 173 ~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~--~~~-~~~l~~L 245 (347)
T 4fmz_A 173 IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD--LSP-LANLSQL 245 (347)
T ss_dssp GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC--CGG-GTTCTTC
T ss_pred hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCC--Ccc-hhcCCCC
Confidence 3344555555555555443222 3344444555555554443222 4556666666666666653 222 5556666
Q ss_pred cEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEe
Q 038633 91 RYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVEL 170 (176)
Q Consensus 91 ~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L 170 (176)
++|++++|.+.. . +.+..+++|+.|++++|.+... ..+..+++|++|++++|.+.+.++. .++.+++|++|
T Consensus 246 ~~L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~----~~~~~l~~L~~L~L~~n~l~~~~~~---~l~~l~~L~~L 316 (347)
T 4fmz_A 246 TWLEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI----SVLNNLSQLNSLFLNNNQLGNEDME---VIGGLTNLTTL 316 (347)
T ss_dssp CEEECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC----GGGGGCTTCSEEECCSSCCCGGGHH---HHHTCTTCSEE
T ss_pred CEEECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC----hhhcCCCCCCEEECcCCcCCCcChh---HhhccccCCEE
Confidence 666666666652 2 3455666666666666665332 1245566666666666666655543 45556666666
Q ss_pred eCcCC
Q 038633 171 RLPNC 175 (176)
Q Consensus 171 ~l~~n 175 (176)
++++|
T Consensus 317 ~L~~n 321 (347)
T 4fmz_A 317 FLSQN 321 (347)
T ss_dssp ECCSS
T ss_pred EccCC
Confidence 66665
No 82
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.79 E-value=5.8e-19 Score=118.94 Aligned_cols=133 Identities=21% Similarity=0.149 Sum_probs=64.6
Q ss_pred CcceEeecCCCCcc-ccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCCCCEE
Q 038633 39 SFDTYEDDAGHELG-GPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYL 117 (176)
Q Consensus 39 ~~l~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L 117 (176)
.++++|++++|.++ +.+|..+..+++|++|++++|.+.. . ..+..+++|++|++++|++.+..|..+..+++|+.|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS--V-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC--C-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC--h-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 34555555555554 3444444555555555555555542 2 344455555555555555543344444445555555
Q ss_pred EccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCC
Q 038633 118 DLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNC 175 (176)
Q Consensus 118 ~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n 175 (176)
++++|.++..+. ...+..+++|++|++++|.+.+.++.....+..+++|++|++++|
T Consensus 101 ~Ls~N~l~~~~~-~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 101 NLSGNKLKDIST-LEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp ECBSSSCCSSGG-GGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred eccCCccCcchh-HHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 555555532111 122445555555555555555443311114445555555555544
No 83
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.79 E-value=4.6e-19 Score=117.21 Aligned_cols=133 Identities=19% Similarity=0.142 Sum_probs=99.8
Q ss_pred CCcceEeecCCCCcc-ccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCCCCE
Q 038633 38 DSFDTYEDDAGHELG-GPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLY 116 (176)
Q Consensus 38 ~~~l~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~ 116 (176)
..+++.|++++|.++ +.+|..+..+++|++|++++|.+.. . ..+..+++|++|++++|++.+..|..++.+++|+.
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~--~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS--I-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC--C-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC--c-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 356778888888886 5677777788888888888888773 4 66777888888888888887557777777888888
Q ss_pred EEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcC
Q 038633 117 LDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPN 174 (176)
Q Consensus 117 L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~ 174 (176)
|++++|.+...+ ....+..+++|++|++++|.+.+.++.....++.+++|+.|++++
T Consensus 93 L~ls~N~i~~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 93 LNLSGNKIKDLS-TIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EECTTSCCCSHH-HHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred EECCCCcCCChH-HHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 888888874322 113477888899999999988776652123677788999998864
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.79 E-value=6.2e-20 Score=135.14 Aligned_cols=131 Identities=18% Similarity=-0.011 Sum_probs=57.3
Q ss_pred CCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCC-cch--hhhcCcCCccEEEeecccCCCCcch----hccC
Q 038633 38 DSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGF-KVP--EFIGSLKELRYLNLSGSFFSGTIPQ----SLGN 110 (176)
Q Consensus 38 ~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~p--~~~~~l~~L~~L~l~~~~~~~~~p~----~~~~ 110 (176)
+.+|++|++++|.+++..+..+..+++|++|++++|.+.+. ..+ ..+..+++|++|++++|++. ..+. .++.
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~ 222 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAA 222 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHH
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhc
Confidence 44444444544444444444444455555555555543310 011 11133445555555555543 2222 1234
Q ss_pred CCCCCEEEccCCccCcc-cccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCC
Q 038633 111 LTNLLYLDLNNFLDQSN-QIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNC 175 (176)
Q Consensus 111 l~~L~~L~l~~n~~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n 175 (176)
+++|++|++++|.+... +.....+..+++|++|++++|.+...+. .+ .++|++|++++|
T Consensus 223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~----~~--~~~L~~L~Ls~N 282 (310)
T 4glp_A 223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPK----GL--PAKLRVLDLSSN 282 (310)
T ss_dssp TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCS----CC--CSCCSCEECCSC
T ss_pred CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhh----hh--cCCCCEEECCCC
Confidence 45555555555555221 1111111122456666666666553322 22 146666666655
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.78 E-value=7.6e-20 Score=135.75 Aligned_cols=160 Identities=22% Similarity=0.208 Sum_probs=87.7
Q ss_pred cccccceeeccCccccCC-CCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCc-cccCCcchhhhcCcCCc
Q 038633 13 LLSRIFALSLLRCCSVGS-ALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMN-NFKGFKVPEFIGSLKEL 90 (176)
Q Consensus 13 ~~~~l~~l~l~~~~~~~~-~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~p~~~~~l~~L 90 (176)
.+++++.|++++|.+... .+.....+++|++|++++|.+++..+..+..+++|++|++++| .++....+..+..+++|
T Consensus 91 ~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L 170 (336)
T 2ast_B 91 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 170 (336)
T ss_dssp CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred cCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCC
Confidence 456666666666665433 3344455566666666666666566666666666666666666 44432144445566666
Q ss_pred cEEEeecc-cCCCC-cchhccCCC-CCCEEEccCCccCcc-cccccccCCCCCccEEeccCCC-CCCchhhhHHHhhccc
Q 038633 91 RYLNLSGS-FFSGT-IPQSLGNLT-NLLYLDLNNFLDQSN-QIGLGWLSGLPSLKYLNLGGAD-LSKDAAYWLESISMLR 165 (176)
Q Consensus 91 ~~L~l~~~-~~~~~-~p~~~~~l~-~L~~L~l~~n~~~~~-~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~~~ 165 (176)
++|++++| .+.+. .+..+..++ +|++|++++|.+... ......+..+++|++|++++|. +.+..+. .+..++
T Consensus 171 ~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~---~l~~l~ 247 (336)
T 2ast_B 171 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ---EFFQLN 247 (336)
T ss_dssp CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGG---GGGGCT
T ss_pred CEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHH---HHhCCC
Confidence 66666666 55422 344455566 666666666632101 1111223455666666666665 3333332 445556
Q ss_pred cCcEeeCcCC
Q 038633 166 SLVELRLPNC 175 (176)
Q Consensus 166 ~L~~L~l~~n 175 (176)
+|++|++++|
T Consensus 248 ~L~~L~l~~~ 257 (336)
T 2ast_B 248 YLQHLSLSRC 257 (336)
T ss_dssp TCCEEECTTC
T ss_pred CCCEeeCCCC
Confidence 6666666655
No 86
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.78 E-value=3.7e-18 Score=135.87 Aligned_cols=149 Identities=22% Similarity=0.159 Sum_probs=107.3
Q ss_pred cccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcC
Q 038633 9 SDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLK 88 (176)
Q Consensus 9 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~ 88 (176)
+.+..+++|+.|++++|.+.+..+ +..+.+|+.|++++|.+++ + ..+..+++|++|++++|.+.. + +.+..++
T Consensus 59 ~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~--l-~~l~~l~ 131 (605)
T 1m9s_A 59 QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-L-SSLKDLKKLKSLSLEHNGISD--I-NGLVHLP 131 (605)
T ss_dssp TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-TTSTTCTTCCEEECTTSCCCC--C-GGGGGCT
T ss_pred hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-C-hhhccCCCCCEEEecCCCCCC--C-ccccCCC
Confidence 456667777788887777766543 6677777888888887754 2 356777888888888887773 3 3466778
Q ss_pred CccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCc
Q 038633 89 ELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLV 168 (176)
Q Consensus 89 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~ 168 (176)
+|+.|++++|++.+. ..+..+++|+.|++++|.+..... +..+++|+.|+|++|.+.+. + .+..+++|+
T Consensus 132 ~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~i~~l-~----~l~~l~~L~ 200 (605)
T 1m9s_A 132 QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYLSKNHISDL-R----ALAGLKNLD 200 (605)
T ss_dssp TCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCBC-G----GGTTCTTCS
T ss_pred ccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh----hccCCCCCEEECcCCCCCCC-h----HHccCCCCC
Confidence 888888888887633 457778888888888887743222 67788888888888888764 3 567788888
Q ss_pred EeeCcCC
Q 038633 169 ELRLPNC 175 (176)
Q Consensus 169 ~L~l~~n 175 (176)
.|++++|
T Consensus 201 ~L~L~~N 207 (605)
T 1m9s_A 201 VLELFSQ 207 (605)
T ss_dssp EEECCSE
T ss_pred EEEccCC
Confidence 8888876
No 87
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.78 E-value=2e-18 Score=119.30 Aligned_cols=136 Identities=18% Similarity=0.129 Sum_probs=114.8
Q ss_pred ccccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCc
Q 038633 8 LSDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSL 87 (176)
Q Consensus 8 ~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l 87 (176)
++.+..+++++.|++++|.+... .....+++|++|++++|.+++..+..+..+++|++|++++|.+... .|..+..+
T Consensus 59 l~~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~-~~~~l~~l 135 (197)
T 4ezg_A 59 LTGIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDS-ILTKINTL 135 (197)
T ss_dssp CTTGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGG-GHHHHTTC
T ss_pred hHHHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcH-hHHHHhhC
Confidence 34677889999999999966433 4667789999999999999988889999999999999999999975 78899999
Q ss_pred CCccEEEeeccc-CCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCC
Q 038633 88 KELRYLNLSGSF-FSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSK 152 (176)
Q Consensus 88 ~~L~~L~l~~~~-~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 152 (176)
++|++|++++|. +. ..| .+..+++|+.|++++|.++... .+..+++|++|++++|.+.+
T Consensus 136 ~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~----~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 136 PKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR----GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp SSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT----TGGGCSSCCEEEECBC----
T ss_pred CCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH----HhccCCCCCEEEeeCcccCC
Confidence 999999999998 65 555 6889999999999999985433 37889999999999999753
No 88
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.78 E-value=3.9e-18 Score=117.45 Aligned_cols=132 Identities=19% Similarity=0.089 Sum_probs=109.1
Q ss_pred ceeeccCccccCCCCcCcccCCcceEeecCCCCccccchh-hhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEee
Q 038633 18 FALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISP-SLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLS 96 (176)
Q Consensus 18 ~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~ 96 (176)
++++++++.+... |.... ..+++|++++|.+++..+. .+..+++|++|++++|.+... .|..+..+++|++|+++
T Consensus 11 ~~l~~s~~~l~~i-p~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLKEI-PRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCSSC-CSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcCcC-ccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCc-CHhHcCCcccCCEEECC
Confidence 7889998888554 33222 2789999999999766654 488999999999999999976 78899999999999999
Q ss_pred cccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchh
Q 038633 97 GSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAA 155 (176)
Q Consensus 97 ~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 155 (176)
+|++.+..+..++.+++|+.|++++|.++ ...+..+..+++|++|++++|.+....+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQIS--CVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCC--EECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCC--eeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 99998666667889999999999999984 3444558899999999999999886543
No 89
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.78 E-value=6e-18 Score=126.07 Aligned_cols=152 Identities=19% Similarity=0.187 Sum_probs=128.1
Q ss_pred cccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcC
Q 038633 9 SDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLK 88 (176)
Q Consensus 9 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~ 88 (176)
+.+..+++++.+++.+|.+....+ ...+.+|++|++++|.+++..+ +..+++|++|++++|.+.. + +.+..++
T Consensus 193 ~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~--~-~~~~~l~ 265 (347)
T 4fmz_A 193 SPLASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--I-NAVKDLT 265 (347)
T ss_dssp GGGGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC--C-GGGTTCT
T ss_pred ccccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC--C-hhHhcCC
Confidence 346778999999999998876544 6788899999999999976544 8899999999999999884 3 4678899
Q ss_pred CccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCc
Q 038633 89 ELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLV 168 (176)
Q Consensus 89 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~ 168 (176)
+|++|++++|++.+ . +.+..+++|+.|++++|++. ......+..+++|++|++++|.+.+.++ ++.+++|+
T Consensus 266 ~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~L~~n~l~--~~~~~~l~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~ 336 (347)
T 4fmz_A 266 KLKMLNVGSNQISD-I-SVLNNLSQLNSLFLNNNQLG--NEDMEVIGGLTNLTTLFLSQNHITDIRP-----LASLSKMD 336 (347)
T ss_dssp TCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCC--GGGHHHHHTCTTCSEEECCSSSCCCCGG-----GGGCTTCS
T ss_pred CcCEEEccCCccCC-C-hhhcCCCCCCEEECcCCcCC--CcChhHhhccccCCEEEccCCccccccC-----hhhhhccc
Confidence 99999999999974 4 45788999999999999983 3444557889999999999999987754 57799999
Q ss_pred EeeCcCCC
Q 038633 169 ELRLPNCN 176 (176)
Q Consensus 169 ~L~l~~n~ 176 (176)
+|++++|.
T Consensus 337 ~L~l~~N~ 344 (347)
T 4fmz_A 337 SADFANQV 344 (347)
T ss_dssp EESSSCC-
T ss_pred eeehhhhc
Confidence 99999984
No 90
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.78 E-value=1e-18 Score=143.92 Aligned_cols=164 Identities=17% Similarity=0.059 Sum_probs=128.4
Q ss_pred ecccccccccccceeeccCccccCCC-CcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhh-
Q 038633 6 FALSDLHLLSRIFALSLLRCCSVGSA-LAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEF- 83 (176)
Q Consensus 6 ~~~~~~~~~~~l~~l~l~~~~~~~~~-~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~- 83 (176)
+...++..+++|+.|++++|...... +..+..+.+|++|++++|.+++..|..|.++++|++|++++|.+.+. .|..
T Consensus 39 i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~-~~~~~ 117 (844)
T 3j0a_A 39 VTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDA-VLKDG 117 (844)
T ss_dssp ECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSC-CSTTC
T ss_pred cChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcc-cccCc
Confidence 44557788899999999999665544 66788899999999999999988899999999999999999999865 5654
Q ss_pred -hcCcCCccEEEeecccCCCCcc-hhccCCCCCCEEEccCCccCcccccccccCCC--CCccEEeccCCCCCCchhhhHH
Q 038633 84 -IGSLKELRYLNLSGSFFSGTIP-QSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGL--PSLKYLNLGGADLSKDAAYWLE 159 (176)
Q Consensus 84 -~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~ 159 (176)
+..+++|++|++++|.+.+..+ ..++.+++|+.|++++|.++. .....+..+ ++|+.|++++|.+.+..+.
T Consensus 118 ~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~--~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~--- 192 (844)
T 3j0a_A 118 YFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL--VCEHELEPLQGKTLSFFSLAANSLYSRVSV--- 192 (844)
T ss_dssp CCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC--CCSGGGHHHHHCSSCCCEECCSBSCCCCCC---
T ss_pred cccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe--eCHHHcccccCCccceEECCCCcccccccc---
Confidence 8889999999999999975544 568899999999999998843 222234444 6788888888887765543
Q ss_pred Hhhcccc------CcEeeCcCC
Q 038633 160 SISMLRS------LVELRLPNC 175 (176)
Q Consensus 160 ~l~~~~~------L~~L~l~~n 175 (176)
.++.++. |+.|++++|
T Consensus 193 ~~~~~~~~~~~~~L~~L~Ls~n 214 (844)
T 3j0a_A 193 DWGKCMNPFRNMVLEILDVSGN 214 (844)
T ss_dssp CCCSSSCTTTTCCBSEEBCSSC
T ss_pred chhhcCCccccCceeEEecCCC
Confidence 3443333 788888776
No 91
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.78 E-value=1.1e-18 Score=128.89 Aligned_cols=129 Identities=16% Similarity=0.068 Sum_probs=92.6
Q ss_pred CCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhh-cCcCCccEEEeecccCCCCcchhccCCCCCCE
Q 038633 38 DSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFI-GSLKELRYLNLSGSFFSGTIPQSLGNLTNLLY 116 (176)
Q Consensus 38 ~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~-~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~ 116 (176)
..+|++|++++|.+++..+..+..+++|++|++++|.+... .+..+ ..+++|++|++++|++. ..+. ...+++|+.
T Consensus 119 ~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~~l~~L~~L~L~~N~l~-~~~~-~~~l~~L~~ 195 (317)
T 3o53_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV-NFAELAASSDTLEHLNLQYNFIY-DVKG-QVVFAKLKT 195 (317)
T ss_dssp CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE-EGGGGGGGTTTCCEEECTTSCCC-EEEC-CCCCTTCCE
T ss_pred cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc-cHHHHhhccCcCCEEECCCCcCc-cccc-ccccccCCE
Confidence 45677888888888776666777788888888888888765 55555 36788888888888886 4443 335778888
Q ss_pred EEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCCC
Q 038633 117 LDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN 176 (176)
Q Consensus 117 L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n~ 176 (176)
|++++|+++..+. .+..+++|++|++++|.+.+. +. .+..+++|+.|++++|.
T Consensus 196 L~Ls~N~l~~l~~---~~~~l~~L~~L~L~~N~l~~l-~~---~~~~l~~L~~L~l~~N~ 248 (317)
T 3o53_A 196 LDLSSNKLAFMGP---EFQSAAGVTWISLRNNKLVLI-EK---ALRFSQNLEHFDLRGNG 248 (317)
T ss_dssp EECCSSCCCEECG---GGGGGTTCSEEECTTSCCCEE-CT---TCCCCTTCCEEECTTCC
T ss_pred EECCCCcCCcchh---hhcccCcccEEECcCCcccch-hh---HhhcCCCCCEEEccCCC
Confidence 8888887743222 266778888888888888754 33 56677888888888774
No 92
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.77 E-value=1.8e-18 Score=116.54 Aligned_cols=138 Identities=25% Similarity=0.172 Sum_probs=116.5
Q ss_pred cccccceeeccCcccc-CCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCcc
Q 038633 13 LLSRIFALSLLRCCSV-GSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELR 91 (176)
Q Consensus 13 ~~~~l~~l~l~~~~~~-~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~ 91 (176)
..++++.|++++|.+. +..+..+..+.+|++|++++|.+++. ..+..+++|++|++++|.+... .|..+..+++|+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~ 98 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLT 98 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCC
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCC
Confidence 3578999999999997 56666678889999999999999865 7788999999999999999965 788888899999
Q ss_pred EEEeecccCCCCcc--hhccCCCCCCEEEccCCccCcccc-cccccCCCCCccEEeccCCCCCCch
Q 038633 92 YLNLSGSFFSGTIP--QSLGNLTNLLYLDLNNFLDQSNQI-GLGWLSGLPSLKYLNLGGADLSKDA 154 (176)
Q Consensus 92 ~L~l~~~~~~~~~p--~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~ 154 (176)
+|++++|.+. .+| ..+..+++|+.|++++|++...+. ....+..+++|++|++++|.+...+
T Consensus 99 ~L~Ls~N~l~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 99 HLNLSGNKLK-DISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp EEECBSSSCC-SSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred EEeccCCccC-cchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 9999999998 444 678899999999999999843322 0135789999999999999987554
No 93
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.77 E-value=6.8e-18 Score=132.05 Aligned_cols=133 Identities=22% Similarity=0.215 Sum_probs=108.0
Q ss_pred ccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCC-cchhhhcCcCCccEEEeecccCCCCcchh-ccCCCC
Q 038633 36 FRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGF-KVPEFIGSLKELRYLNLSGSFFSGTIPQS-LGNLTN 113 (176)
Q Consensus 36 ~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~p~~~~~l~~L~~L~l~~~~~~~~~p~~-~~~l~~ 113 (176)
..+..|++|++++|.+++..|..+..+++|++|++++|.+... .+|..+..+++|++|++++|++.+.+|.. +..+++
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~ 400 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKS 400 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCcc
Confidence 5677899999999999888889999999999999999998852 15567889999999999999998657754 778899
Q ss_pred CCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCCC
Q 038633 114 LLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN 176 (176)
Q Consensus 114 L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n~ 176 (176)
|+.|++++|.+.. ..+..+. ++|++|++++|.+...+. .+..+++|++|++++|+
T Consensus 401 L~~L~Ls~N~l~~--~~~~~l~--~~L~~L~Ls~N~l~~ip~----~~~~l~~L~~L~L~~N~ 455 (520)
T 2z7x_B 401 LLSLNMSSNILTD--TIFRCLP--PRIKVLDLHSNKIKSIPK----QVVKLEALQELNVASNQ 455 (520)
T ss_dssp CCEEECCSSCCCG--GGGGSCC--TTCCEEECCSSCCCCCCG----GGGGCTTCCEEECCSSC
T ss_pred CCEEECcCCCCCc--chhhhhc--ccCCEEECCCCcccccch----hhhcCCCCCEEECCCCc
Confidence 9999999998842 2221121 689999999999985544 55689999999999984
No 94
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.77 E-value=1.9e-18 Score=134.57 Aligned_cols=129 Identities=16% Similarity=0.075 Sum_probs=104.8
Q ss_pred CCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhc-CcCCccEEEeecccCCCCcchhccCCCCCCE
Q 038633 38 DSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIG-SLKELRYLNLSGSFFSGTIPQSLGNLTNLLY 116 (176)
Q Consensus 38 ~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~-~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~ 116 (176)
+++|+.|++++|.+++..|..+..+++|++|++++|.+.+. .|..+. .+++|++|++++|.+. ..|. ...+++|+.
T Consensus 119 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~l~~~l~~L~~L~Ls~N~l~-~~~~-~~~l~~L~~ 195 (487)
T 3oja_A 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV-NFAELAASSDTLEHLNLQYNFIY-DVKG-QVVFAKLKT 195 (487)
T ss_dssp CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEE-EGGGGGGGTTTCCEEECTTSCCC-EEEC-CCCCTTCCE
T ss_pred cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCc-ChHHHhhhCCcccEEecCCCccc-cccc-cccCCCCCE
Confidence 46788999999999888888888999999999999999976 777765 7899999999999987 3343 346889999
Q ss_pred EEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCCC
Q 038633 117 LDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN 176 (176)
Q Consensus 117 L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n~ 176 (176)
|++++|.++..+ ..+..+++|+.|++++|.+.+.++ .++.+++|+.|++++|.
T Consensus 196 L~Ls~N~l~~~~---~~~~~l~~L~~L~Ls~N~l~~lp~----~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 196 LDLSSNKLAFMG---PEFQSAAGVTWISLRNNKLVLIEK----ALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp EECCSSCCCEEC---GGGGGGTTCSEEECTTSCCCEECT----TCCCCTTCCEEECTTCC
T ss_pred EECCCCCCCCCC---HhHcCCCCccEEEecCCcCcccch----hhccCCCCCEEEcCCCC
Confidence 999999885322 236788899999999999986543 56778899999999884
No 95
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.77 E-value=4.1e-19 Score=131.76 Aligned_cols=162 Identities=19% Similarity=0.113 Sum_probs=125.0
Q ss_pred ccccccccceeeccCccccCCCCcCcccCCcceEeecCCC-Ccccc-chhhhcCCCCCcEEEccCc-cccCCcchhhhcC
Q 038633 10 DLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGH-ELGGP-ISPSLLQLKDLKYLDLSMN-NFKGFKVPEFIGS 86 (176)
Q Consensus 10 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n-~l~~~-~~~~l~~l~~L~~L~l~~~-~~~~~~~p~~~~~ 86 (176)
.+..+++|+.|++++|.+.+..+.....+++|++|++++| .+++. ++..+..+++|++|++++| .++...++..+..
T Consensus 113 ~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~ 192 (336)
T 2ast_B 113 ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAH 192 (336)
T ss_dssp HHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHH
T ss_pred HHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHh
Confidence 3556889999999999887666666677899999999999 68763 6777888999999999999 8875325677888
Q ss_pred cC-CccEEEeecc--cCC-CCcchhccCCCCCCEEEccCCc-cCcccccccccCCCCCccEEeccCCCCCCchhhhHHHh
Q 038633 87 LK-ELRYLNLSGS--FFS-GTIPQSLGNLTNLLYLDLNNFL-DQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESI 161 (176)
Q Consensus 87 l~-~L~~L~l~~~--~~~-~~~p~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 161 (176)
++ +|++|++++| .+. ..+|..+..+++|+.|++++|. ++ ......+..+++|++|++++|.- ..+..+..+
T Consensus 193 l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~--~~~~~~l~~l~~L~~L~l~~~~~--~~~~~~~~l 268 (336)
T 2ast_B 193 VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK--NDCFQEFFQLNYLQHLSLSRCYD--IIPETLLEL 268 (336)
T ss_dssp SCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCC--GGGGGGGGGCTTCCEEECTTCTT--CCGGGGGGG
T ss_pred cccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCC--HHHHHHHhCCCCCCEeeCCCCCC--CCHHHHHHH
Confidence 88 9999999999 444 3456677788999999999998 42 22333577889999999999962 222222357
Q ss_pred hccccCcEeeCcCC
Q 038633 162 SMLRSLVELRLPNC 175 (176)
Q Consensus 162 ~~~~~L~~L~l~~n 175 (176)
+.+++|+.|++++|
T Consensus 269 ~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 269 GEIPTLKTLQVFGI 282 (336)
T ss_dssp GGCTTCCEEECTTS
T ss_pred hcCCCCCEEeccCc
Confidence 78899999999876
No 96
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.76 E-value=1.7e-17 Score=128.37 Aligned_cols=147 Identities=23% Similarity=0.217 Sum_probs=87.4
Q ss_pred cccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCc
Q 038633 11 LHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKEL 90 (176)
Q Consensus 11 ~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L 90 (176)
+..+++++.|++++|.+.+..+ ...+.+|++|++++|.+++..+ +..+++|++|++++|.+.+. +. +..+++|
T Consensus 239 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~--~~-~~~l~~L 311 (466)
T 1o6v_A 239 LASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI--SP-ISNLKNL 311 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCC--GG-GGGCTTC
T ss_pred hhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCc--hh-hcCCCCC
Confidence 3444555555555555544322 4455556666666666654322 55666666666666666632 22 5566666
Q ss_pred cEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEe
Q 038633 91 RYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVEL 170 (176)
Q Consensus 91 ~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L 170 (176)
++|++++|++.+..| +..+++|+.|++.+|++... ..+..+++|++|++++|.+.+.+| +..++.|+.|
T Consensus 312 ~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~----~~l~~l~~L~~L~l~~n~l~~~~~-----~~~l~~L~~L 380 (466)
T 1o6v_A 312 TYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV----SSLANLTNINWLSAGHNQISDLTP-----LANLTRITQL 380 (466)
T ss_dssp SEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC----GGGTTCTTCCEEECCSSCCCBCGG-----GTTCTTCCEE
T ss_pred CEEECcCCcCCCchh--hccCccCCEeECCCCccCCc----hhhccCCCCCEEeCCCCccCccch-----hhcCCCCCEE
Confidence 666666666654333 55666777777777766432 235677777777777777766553 4567777777
Q ss_pred eCcCC
Q 038633 171 RLPNC 175 (176)
Q Consensus 171 ~l~~n 175 (176)
++++|
T Consensus 381 ~l~~n 385 (466)
T 1o6v_A 381 GLNDQ 385 (466)
T ss_dssp ECCCE
T ss_pred eccCC
Confidence 77765
No 97
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=1.1e-17 Score=133.05 Aligned_cols=150 Identities=25% Similarity=0.143 Sum_probs=127.6
Q ss_pred cccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcC
Q 038633 9 SDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLK 88 (176)
Q Consensus 9 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~ 88 (176)
.++..+++|+.|++++|.+... +.+..+.+|+.|++++|.+++..+ +..+++|+.|++++|.+.. +| .+..++
T Consensus 37 ~~~~~L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~--l~-~l~~l~ 109 (605)
T 1m9s_A 37 VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD--LS-SLKDLK 109 (605)
T ss_dssp ECHHHHTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC--CT-TSTTCT
T ss_pred cchhcCCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC--Ch-hhccCC
Confidence 3455678999999999998664 357788999999999999986554 8899999999999999983 44 788899
Q ss_pred CccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCc
Q 038633 89 ELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLV 168 (176)
Q Consensus 89 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~ 168 (176)
+|++|++++|++.. + +.+..+++|+.|++++|.+... ..+..+++|+.|+|++|.+.+.++ +..+++|+
T Consensus 110 ~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l----~~l~~l~~L~~L~Ls~N~l~~~~~-----l~~l~~L~ 178 (605)
T 1m9s_A 110 KLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI----TVLSRLTKLDTLSLEDNQISDIVP-----LAGLTKLQ 178 (605)
T ss_dssp TCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC----GGGGSCTTCSEEECCSSCCCCCGG-----GTTCTTCC
T ss_pred CCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc----hhhcccCCCCEEECcCCcCCCchh-----hccCCCCC
Confidence 99999999999973 3 4588999999999999998543 347899999999999999987754 67899999
Q ss_pred EeeCcCCC
Q 038633 169 ELRLPNCN 176 (176)
Q Consensus 169 ~L~l~~n~ 176 (176)
.|+|++|+
T Consensus 179 ~L~Ls~N~ 186 (605)
T 1m9s_A 179 NLYLSKNH 186 (605)
T ss_dssp EEECCSSC
T ss_pred EEECcCCC
Confidence 99999984
No 98
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.76 E-value=5.1e-18 Score=116.86 Aligned_cols=126 Identities=25% Similarity=0.258 Sum_probs=107.6
Q ss_pred eEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchh-hhcCcCCccEEEeecccCCCCcchhccCCCCCCEEEcc
Q 038633 42 TYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPE-FIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLN 120 (176)
Q Consensus 42 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~-~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~ 120 (176)
+.++++++.++ .+|..+. ..+++|++++|.+... .+. .+..+++|++|++++|++.+..|..++.+++|+.|+++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRI-SSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSB-CCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCcc-CCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 57899999994 6676553 3899999999999954 443 48899999999999999997778899999999999999
Q ss_pred CCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCCC
Q 038633 121 NFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN 176 (176)
Q Consensus 121 ~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n~ 176 (176)
+|.++ ......+..+++|++|++++|.+.+.++. .+..+++|++|++++|.
T Consensus 87 ~N~l~--~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 87 ENKIK--EISNKMFLGLHQLKTLNLYDNQISCVMPG---SFEHLNSLTSLNLASNP 137 (192)
T ss_dssp SCCCC--EECSSSSTTCTTCCEEECCSSCCCEECTT---SSTTCTTCCEEECTTCC
T ss_pred CCcCC--ccCHHHhcCCCCCCEEECCCCcCCeeCHH---HhhcCCCCCEEEeCCCC
Confidence 99994 34445588999999999999999988776 78889999999999984
No 99
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.76 E-value=5.6e-18 Score=111.94 Aligned_cols=132 Identities=26% Similarity=0.151 Sum_probs=110.6
Q ss_pred cccccceeeccCcccc-CCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCcc
Q 038633 13 LLSRIFALSLLRCCSV-GSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELR 91 (176)
Q Consensus 13 ~~~~l~~l~l~~~~~~-~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~ 91 (176)
..++++.|++++|.+. +..+..+..+.+|++|++++|.+++. ..+..+++|++|++++|.+... +|..+..+++|+
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~ 91 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGG-LEVLAEKCPNLT 91 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSC-THHHHHHCTTCC
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccch-HHHHhhhCCCCC
Confidence 3578999999999998 56677778899999999999999866 7788999999999999999975 888888899999
Q ss_pred EEEeecccCCCC-cchhccCCCCCCEEEccCCccCcccc-cccccCCCCCccEEeccC
Q 038633 92 YLNLSGSFFSGT-IPQSLGNLTNLLYLDLNNFLDQSNQI-GLGWLSGLPSLKYLNLGG 147 (176)
Q Consensus 92 ~L~l~~~~~~~~-~p~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~l~~L~~L~l~~ 147 (176)
+|++++|++.+. .+..++.+++|+.|++++|++...+. ....+..+++|+.|++++
T Consensus 92 ~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 92 HLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred EEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 999999999842 23778899999999999999843322 013477899999998763
No 100
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.75 E-value=2.6e-17 Score=113.42 Aligned_cols=127 Identities=19% Similarity=0.122 Sum_probs=106.7
Q ss_pred ceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeec
Q 038633 18 FALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSG 97 (176)
Q Consensus 18 ~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~ 97 (176)
+.++++++.+...... ...++++|++++|.++ .+|..|..+++|++|++++|.+... .+..+..+++|++|++++
T Consensus 13 ~~l~~~~~~l~~ip~~---~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i-~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG---IPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTL-SNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCSSCCSC---CCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCCcCCCC---CCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEe-CHhHccCCCCCCEEECCC
Confidence 5788888877654322 2357999999999996 6778999999999999999999976 667899999999999999
Q ss_pred ccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCC
Q 038633 98 SFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLS 151 (176)
Q Consensus 98 ~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 151 (176)
|++....|..+..+++|+.|++++|.++. .....+..+++|+.|++++|.+.
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISV--VPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCB--CCTTTTTTCTTCCEEECCSSCEE
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCe--eChhhhhcCccccEEEeCCCCee
Confidence 99986666789999999999999999953 33445788999999999999885
No 101
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.75 E-value=1.8e-17 Score=114.24 Aligned_cols=125 Identities=28% Similarity=0.285 Sum_probs=107.7
Q ss_pred eEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCCCCEEEccC
Q 038633 42 TYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNN 121 (176)
Q Consensus 42 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~ 121 (176)
+.++++++.++ .+|..+ .+++++|++++|.+. .+|..+..+++|++|++++|++.+..+..|..+++|+.|++++
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~--~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT--LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC--SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc--hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 46899999986 566654 468999999999999 5788999999999999999999966667899999999999999
Q ss_pred CccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCCC
Q 038633 122 FLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN 176 (176)
Q Consensus 122 n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n~ 176 (176)
|.++ ......|..+++|++|+|++|.+...++. .+..+++|+.|++++|.
T Consensus 88 N~l~--~i~~~~f~~l~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 88 NRLR--CIPPRTFDGLKSLRLLSLHGNDISVVPEG---AFNDLSALSHLAIGANP 137 (193)
T ss_dssp SCCC--BCCTTTTTTCTTCCEEECCSSCCCBCCTT---TTTTCTTCCEEECCSSC
T ss_pred CccC--EeCHHHhCCCCCCCEEECCCCCCCeeChh---hhhcCccccEEEeCCCC
Confidence 9994 34445688999999999999999977765 67889999999999984
No 102
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.75 E-value=1.1e-17 Score=132.14 Aligned_cols=150 Identities=15% Similarity=0.055 Sum_probs=115.2
Q ss_pred ccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCcc
Q 038633 12 HLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELR 91 (176)
Q Consensus 12 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~ 91 (176)
..|...+.++++++.+.+. |.... .++++|++++|.+++..+..|.++++|++|++++|.+... .|..+..+++|+
T Consensus 28 ~~~~~~~~l~ls~~~L~~i-p~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~ 103 (562)
T 3a79_B 28 FSNELESMVDYSNRNLTHV-PKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSL-DFHVFLFNQDLE 103 (562)
T ss_dssp -----CCEEECTTSCCCSC-CTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEE-CTTTTTTCTTCC
T ss_pred cccCCCcEEEcCCCCCccC-CCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcC-CHHHhCCCCCCC
Confidence 3455567899999888763 33222 7889999999999887778899999999999999999865 678888999999
Q ss_pred EEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccC--cE
Q 038633 92 YLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSL--VE 169 (176)
Q Consensus 92 ~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L--~~ 169 (176)
+|++++|++. .+|.. .+++|++|++++|.++..+ .+..+.++++|++|++++|.+.+. .+..++.| ++
T Consensus 104 ~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~-~p~~~~~l~~L~~L~L~~n~l~~~------~~~~l~~L~L~~ 173 (562)
T 3a79_B 104 YLDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLP-VCKEFGNLTKLTFLGLSAAKFRQL------DLLPVAHLHLSC 173 (562)
T ss_dssp EEECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCC-CCGGGGGCTTCCEEEEECSBCCTT------TTGGGTTSCEEE
T ss_pred EEECCCCcCC-ccCcc--ccccCCEEECCCCCccccC-chHhhcccCcccEEecCCCccccC------chhhhhhceeeE
Confidence 9999999987 67765 7899999999999885322 124578899999999999998753 33444555 88
Q ss_pred eeCcCC
Q 038633 170 LRLPNC 175 (176)
Q Consensus 170 L~l~~n 175 (176)
|++++|
T Consensus 174 L~L~~n 179 (562)
T 3a79_B 174 ILLDLV 179 (562)
T ss_dssp EEEEES
T ss_pred EEeecc
Confidence 888876
No 103
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.74 E-value=7.2e-17 Score=109.56 Aligned_cols=133 Identities=18% Similarity=0.067 Sum_probs=108.6
Q ss_pred cceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEee
Q 038633 17 IFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLS 96 (176)
Q Consensus 17 l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~ 96 (176)
.+.++++++.+..... ....++++|++++|.+++..+..+..+++|++|++++|.+... .+..+..+++|++|+++
T Consensus 9 ~~~l~~~~~~l~~~p~---~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPT---GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL-PDGVFDKLTKLTILYLH 84 (177)
T ss_dssp TTEEECCSSCCSSCCT---TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCCccCCC---CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEe-ChhHccCCCccCEEECC
Confidence 4677888877765432 2236899999999999877777789999999999999999965 55567899999999999
Q ss_pred cccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchh
Q 038633 97 GSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAA 155 (176)
Q Consensus 97 ~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 155 (176)
+|++.+..+..+..+++|+.|++++|.++. .....+..+++|++|++++|.+.+..+
T Consensus 85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~--~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 85 ENKLQSLPNGVFDKLTQLKELALDTNQLKS--VPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSC--CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCCccccCHHHhhCCcccCEEECcCCcceE--eCHHHhcCCcccCEEEecCCCeeccCc
Confidence 999985555667899999999999999853 333446789999999999999987765
No 104
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.74 E-value=1.1e-16 Score=123.80 Aligned_cols=103 Identities=24% Similarity=0.187 Sum_probs=42.5
Q ss_pred cccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccE
Q 038633 13 LLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRY 92 (176)
Q Consensus 13 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~ 92 (176)
.+++++.|++++|.+.+..+ ...+.+|++|++++|.+++. ..+..+++|++|++++|.+... .+ +..+++|++
T Consensus 197 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~-~~--~~~l~~L~~ 269 (466)
T 1o6v_A 197 KLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNL-AP--LSGLTKLTE 269 (466)
T ss_dssp GCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC-GG--GTTCTTCSE
T ss_pred cCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccc-hh--hhcCCCCCE
Confidence 33444444444444433222 23334444444444444321 2334444444444444444422 11 344444444
Q ss_pred EEeecccCCCCcchhccCCCCCCEEEccCCcc
Q 038633 93 LNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLD 124 (176)
Q Consensus 93 L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~ 124 (176)
|++++|.+.+ .+. +..+++|+.|++++|++
T Consensus 270 L~l~~n~l~~-~~~-~~~l~~L~~L~L~~n~l 299 (466)
T 1o6v_A 270 LKLGANQISN-ISP-LAGLTALTNLELNENQL 299 (466)
T ss_dssp EECCSSCCCC-CGG-GTTCTTCSEEECCSSCC
T ss_pred EECCCCccCc-ccc-ccCCCccCeEEcCCCcc
Confidence 4444444442 221 33444444444444444
No 105
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.74 E-value=1.7e-17 Score=119.57 Aligned_cols=145 Identities=17% Similarity=0.129 Sum_probs=120.8
Q ss_pred cccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccE
Q 038633 13 LLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRY 92 (176)
Q Consensus 13 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~ 92 (176)
.+..+..+++.++.+.+.. ....+.++++|++++|.++. ++ .+..+++|++|++++|.+.. .+. +..+++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~--~~~-l~~l~~L~~ 89 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISD--LSP-LKDLTKLEE 89 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC--CGG-GTTCSSCCE
T ss_pred HHHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCC--Chh-hccCCCCCE
Confidence 4566778888888876654 46778899999999999974 45 68899999999999999995 444 889999999
Q ss_pred EEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeC
Q 038633 93 LNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRL 172 (176)
Q Consensus 93 L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l 172 (176)
|++++|++. .+|... . ++|+.|++++|.++... .+..+++|++|++++|.+.+.+ .++.+++|++|++
T Consensus 90 L~L~~N~l~-~l~~~~-~-~~L~~L~L~~N~l~~~~----~l~~l~~L~~L~Ls~N~i~~~~-----~l~~l~~L~~L~L 157 (263)
T 1xeu_A 90 LSVNRNRLK-NLNGIP-S-ACLSRLFLDNNELRDTD----SLIHLKNLEILSIRNNKLKSIV-----MLGFLSKLEVLDL 157 (263)
T ss_dssp EECCSSCCS-CCTTCC-C-SSCCEEECCSSCCSBSG----GGTTCTTCCEEECTTSCCCBCG-----GGGGCTTCCEEEC
T ss_pred EECCCCccC-CcCccc-c-CcccEEEccCCccCCCh----hhcCcccccEEECCCCcCCCCh-----HHccCCCCCEEEC
Confidence 999999997 455433 3 89999999999995432 3789999999999999998763 5788999999999
Q ss_pred cCCC
Q 038633 173 PNCN 176 (176)
Q Consensus 173 ~~n~ 176 (176)
++|+
T Consensus 158 ~~N~ 161 (263)
T 1xeu_A 158 HGNE 161 (263)
T ss_dssp TTSC
T ss_pred CCCc
Confidence 9984
No 106
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.73 E-value=3.6e-18 Score=128.29 Aligned_cols=109 Identities=18% Similarity=0.087 Sum_probs=54.3
Q ss_pred cccceeeccCccccCCCC----cCcccCC-cceEeecCCCCccccchhhhcCC-----CCCcEEEccCccccCCcchhhh
Q 038633 15 SRIFALSLLRCCSVGSAL----AQPFRDS-FDTYEDDAGHELGGPISPSLLQL-----KDLKYLDLSMNNFKGFKVPEFI 84 (176)
Q Consensus 15 ~~l~~l~l~~~~~~~~~~----~~~~~~~-~l~~L~l~~n~l~~~~~~~l~~l-----~~L~~L~l~~~~~~~~~~p~~~ 84 (176)
++++.|++++|.+..... ..+..++ +|++|++++|.+++..+..+..+ ++|++|++++|.+... .+..+
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~-~~~~l 100 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYK-SSDEL 100 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS-CHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChH-HHHHH
Confidence 346666666666554433 2333344 56666666666655545444443 5566666666655543 33322
Q ss_pred c----Cc-CCccEEEeecccCCCCcchhc----cC-CCCCCEEEccCCcc
Q 038633 85 G----SL-KELRYLNLSGSFFSGTIPQSL----GN-LTNLLYLDLNNFLD 124 (176)
Q Consensus 85 ~----~l-~~L~~L~l~~~~~~~~~p~~~----~~-l~~L~~L~l~~n~~ 124 (176)
. .+ ++|++|++++|++.+..+..+ .. .++|++|++++|.+
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 150 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDL 150 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCG
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcC
Confidence 2 22 455556665555543333222 12 23555555555555
No 107
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.72 E-value=4.4e-18 Score=128.69 Aligned_cols=139 Identities=17% Similarity=0.132 Sum_probs=68.1
Q ss_pred ccCCcceEeecCCCCccc----cchhhhcCCCCCcEEEccCccccCCcchhhhc----Cc---------CCccEEEeecc
Q 038633 36 FRDSFDTYEDDAGHELGG----PISPSLLQLKDLKYLDLSMNNFKGFKVPEFIG----SL---------KELRYLNLSGS 98 (176)
Q Consensus 36 ~~~~~l~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~----~l---------~~L~~L~l~~~ 98 (176)
..+.+|++|++++|.+++ .++..+..+++|++|++++|.+... .+..+. .+ ++|++|++++|
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~-~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n 169 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQ-AGAKIARALQELAVNKKAKNAPPLRSIICGRN 169 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHH-HHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHH-HHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence 345566666666666655 3555556666666666666665432 222222 22 56666666666
Q ss_pred cCC-CCcc---hhccCCCCCCEEEccCCccCccc---ccccccCCCCCccEEeccCCCCCCch-hhhHHHhhccccCcEe
Q 038633 99 FFS-GTIP---QSLGNLTNLLYLDLNNFLDQSNQ---IGLGWLSGLPSLKYLNLGGADLSKDA-AYWLESISMLRSLVEL 170 (176)
Q Consensus 99 ~~~-~~~p---~~~~~l~~L~~L~l~~n~~~~~~---~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~~~~L~~L 170 (176)
++. ...+ ..+..+++|+.|++++|.+.... .....+..+++|++|+|++|.+.... ...+..+..+++|++|
T Consensus 170 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L 249 (386)
T 2ca6_A 170 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL 249 (386)
T ss_dssp CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred CCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEE
Confidence 654 2222 23445556666666666553111 11112445555555555555553110 0011134445555555
Q ss_pred eCcCC
Q 038633 171 RLPNC 175 (176)
Q Consensus 171 ~l~~n 175 (176)
++++|
T Consensus 250 ~L~~n 254 (386)
T 2ca6_A 250 GLNDC 254 (386)
T ss_dssp ECTTC
T ss_pred ECCCC
Confidence 55554
No 108
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.72 E-value=3.1e-17 Score=111.36 Aligned_cols=137 Identities=17% Similarity=0.051 Sum_probs=91.5
Q ss_pred ccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCC
Q 038633 10 DLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKE 89 (176)
Q Consensus 10 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~ 89 (176)
.+..+.+++.|++++|.+... +......++|++|++++|.+++. ..+..+++|++|++++|.+... .+..+..+++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~ 89 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRI-GEGLDQALPD 89 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEE-CSCHHHHCTT
T ss_pred hcCCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccccc-CcchhhcCCC
Confidence 445567788888888877643 32222233788888888887654 5677778888888888887733 3334467788
Q ss_pred ccEEEeecccCCCCcch--hccCCCCCCEEEccCCccCccccc-ccccCCCCCccEEeccCCCCC
Q 038633 90 LRYLNLSGSFFSGTIPQ--SLGNLTNLLYLDLNNFLDQSNQIG-LGWLSGLPSLKYLNLGGADLS 151 (176)
Q Consensus 90 L~~L~l~~~~~~~~~p~--~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~l~~L~~L~l~~n~l~ 151 (176)
|++|++++|++. .+|. .+..+++|+.+++++|++...+.. ...+..+++|++|++++|...
T Consensus 90 L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 90 LTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 888888888875 5565 677778888888888877322110 012567777888887777654
No 109
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.71 E-value=1.7e-16 Score=107.69 Aligned_cols=126 Identities=22% Similarity=0.185 Sum_probs=104.0
Q ss_pred eEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCCCCEEEccC
Q 038633 42 TYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNN 121 (176)
Q Consensus 42 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~ 121 (176)
+.++++++.++ .+|..+ .+++++|++++|.+... .+..+..+++|++|++++|++....+..++.+++|+.|++++
T Consensus 10 ~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEe-CHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 56888888886 455443 47899999999999965 556678999999999999999855555678999999999999
Q ss_pred CccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCCC
Q 038633 122 FLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN 176 (176)
Q Consensus 122 n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n~ 176 (176)
|.++. .....+..+++|++|++++|.+.+.++. .+..+++|++|++++|.
T Consensus 86 N~l~~--~~~~~~~~l~~L~~L~l~~N~l~~~~~~---~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 86 NKLQS--LPNGVFDKLTQLKELALDTNQLKSVPDG---IFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp SCCCC--CCTTTTTTCTTCCEEECCSSCCSCCCTT---TTTTCTTCCEEECCSSC
T ss_pred CCccc--cCHHHhhCCcccCEEECcCCcceEeCHH---HhcCCcccCEEEecCCC
Confidence 99953 3334578899999999999999977764 56789999999999984
No 110
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.71 E-value=5.1e-18 Score=128.37 Aligned_cols=164 Identities=16% Similarity=0.058 Sum_probs=83.9
Q ss_pred ccccccceeeccCccccCC----CCcCcccCCcceEeecCCCCccccchhhhc----CC---------CCCcEEEccCcc
Q 038633 12 HLLSRIFALSLLRCCSVGS----ALAQPFRDSFDTYEDDAGHELGGPISPSLL----QL---------KDLKYLDLSMNN 74 (176)
Q Consensus 12 ~~~~~l~~l~l~~~~~~~~----~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~----~l---------~~L~~L~l~~~~ 74 (176)
..+++|+.|++++|.+... .+.....+++|++|++++|.+++..+..+. .+ ++|++|++++|.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 4567777777777776552 233345566677777777776543333332 22 666777777666
Q ss_pred ccCCcch---hhhcCcCCccEEEeecccCCC-----CcchhccCCCCCCEEEccCCccCcc--cccccccCCCCCccEEe
Q 038633 75 FKGFKVP---EFIGSLKELRYLNLSGSFFSG-----TIPQSLGNLTNLLYLDLNNFLDQSN--QIGLGWLSGLPSLKYLN 144 (176)
Q Consensus 75 ~~~~~~p---~~~~~l~~L~~L~l~~~~~~~-----~~p~~~~~l~~L~~L~l~~n~~~~~--~~~~~~~~~l~~L~~L~ 144 (176)
+.....| ..+..+++|++|++++|++.. ..+..+..+++|+.|++++|.+... ...+..+..+++|++|+
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ 250 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 250 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence 6522233 344455666666666666541 1222445556666666666655210 11122344555555555
Q ss_pred ccCCCCCCchhh-hHHHhh--ccccCcEeeCcCC
Q 038633 145 LGGADLSKDAAY-WLESIS--MLRSLVELRLPNC 175 (176)
Q Consensus 145 l~~n~l~~~~~~-~~~~l~--~~~~L~~L~l~~n 175 (176)
+++|.+.+.... .+..+. .+++|+.|++++|
T Consensus 251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n 284 (386)
T 2ca6_A 251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYN 284 (386)
T ss_dssp CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSS
T ss_pred CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCC
Confidence 555555433211 111222 2455555555554
No 111
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.70 E-value=5.5e-18 Score=127.26 Aligned_cols=166 Identities=19% Similarity=0.079 Sum_probs=98.7
Q ss_pred cccccc-ccceeeccCccccCCCCcCcccC-----CcceEeecCCCCccccchhhhcC----C-CCCcEEEccCccccCC
Q 038633 10 DLHLLS-RIFALSLLRCCSVGSALAQPFRD-----SFDTYEDDAGHELGGPISPSLLQ----L-KDLKYLDLSMNNFKGF 78 (176)
Q Consensus 10 ~~~~~~-~l~~l~l~~~~~~~~~~~~~~~~-----~~l~~L~l~~n~l~~~~~~~l~~----l-~~L~~L~l~~~~~~~~ 78 (176)
.+..++ +++.|++++|.+....+..+... .+|++|++++|.+++..+..+.. + ++|++|++++|.+...
T Consensus 45 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~ 124 (362)
T 3goz_A 45 AFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSK 124 (362)
T ss_dssp HHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGS
T ss_pred HHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcH
Confidence 344455 78888888887766554444332 67888888888877666654333 3 7788888888877754
Q ss_pred cchhhhc----C-cCCccEEEeecccCCCCc----chhccCCC-CCCEEEccCCccCccc--ccccccCCC-CCccEEec
Q 038633 79 KVPEFIG----S-LKELRYLNLSGSFFSGTI----PQSLGNLT-NLLYLDLNNFLDQSNQ--IGLGWLSGL-PSLKYLNL 145 (176)
Q Consensus 79 ~~p~~~~----~-l~~L~~L~l~~~~~~~~~----p~~~~~l~-~L~~L~l~~n~~~~~~--~~~~~~~~l-~~L~~L~l 145 (176)
.+..+. . ..+|++|++++|++.+.. +..+...+ +|+.|++++|.+.... .....+..+ ++|++|++
T Consensus 125 -~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L 203 (362)
T 3goz_A 125 -SSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDL 203 (362)
T ss_dssp -CHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred -HHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEEC
Confidence 444433 2 257788888877776432 23334444 7777777777763211 111123344 47777777
Q ss_pred cCCCCCCchhh-hHHHhhc-cccCcEeeCcCCC
Q 038633 146 GGADLSKDAAY-WLESISM-LRSLVELRLPNCN 176 (176)
Q Consensus 146 ~~n~l~~~~~~-~~~~l~~-~~~L~~L~l~~n~ 176 (176)
++|.+.+.... ....+.. .++|++|++++|+
T Consensus 204 s~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~ 236 (362)
T 3goz_A 204 SANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC 236 (362)
T ss_dssp TTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC
T ss_pred CCCCCChhHHHHHHHHHhcCCCCceEEECcCCC
Confidence 77776653222 1123444 2477777777663
No 112
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.70 E-value=4.2e-17 Score=110.70 Aligned_cols=137 Identities=21% Similarity=0.129 Sum_probs=108.4
Q ss_pred CcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcc-hhccCCC
Q 038633 34 QPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIP-QSLGNLT 112 (176)
Q Consensus 34 ~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p-~~~~~l~ 112 (176)
.+....+++.|++++|.++. ++......++|++|++++|.+.. + ..+..+++|++|++++|++. ..| ..+..++
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~--~-~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~ 88 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRK--L-DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALP 88 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCE--E-CCCCCCSSCCEEECCSSCCC-EECSCHHHHCT
T ss_pred hcCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCc--c-cccccCCCCCEEECCCCccc-ccCcchhhcCC
Confidence 35667789999999999974 45433344599999999999983 4 67888999999999999998 555 4458899
Q ss_pred CCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCCC
Q 038633 113 NLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN 176 (176)
Q Consensus 113 ~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n~ 176 (176)
+|+.|++++|.+...+. ...+..+++|++|++++|.+...+......++.+++|+.|++++|.
T Consensus 89 ~L~~L~L~~N~i~~~~~-~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 89 DLTELILTNNSLVELGD-LDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp TCCEEECCSCCCCCGGG-GGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCCEEECCCCcCCcchh-hHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 99999999999954332 1247789999999999999986544222347889999999998874
No 113
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.70 E-value=2.5e-16 Score=121.75 Aligned_cols=148 Identities=15% Similarity=0.070 Sum_probs=86.0
Q ss_pred ccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCC
Q 038633 10 DLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKE 89 (176)
Q Consensus 10 ~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~ 89 (176)
++..+++++.|++++|.+.+. + .+..+.+|++|++++|.+++. + +..+++|++|++++|.+.+ .+ +..+++
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~--~~--~~~l~~ 107 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN--LD--VTPLTK 107 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC--CC--CTTCTT
T ss_pred ChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce--ee--cCCCCc
Confidence 445566777777777766654 2 456666777777777776653 2 5666777777777777663 32 556667
Q ss_pred ccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccc-----------------cccccCCCCCccEEeccCCCCCC
Q 038633 90 LRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQI-----------------GLGWLSGLPSLKYLNLGGADLSK 152 (176)
Q Consensus 90 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~-----------------~~~~~~~l~~L~~L~l~~n~l~~ 152 (176)
|++|++++|++.+ +| ++.+++|++|++++|.++.... ..-.+..+++|++|++++|.+.+
T Consensus 108 L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~ 184 (457)
T 3bz5_A 108 LTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE 184 (457)
T ss_dssp CCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC
T ss_pred CCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce
Confidence 7777777776653 33 5566666666666666632110 00013444555555555555554
Q ss_pred chhhhHHHhhccccCcEeeCcCC
Q 038633 153 DAAYWLESISMLRSLVELRLPNC 175 (176)
Q Consensus 153 ~~~~~~~~l~~~~~L~~L~l~~n 175 (176)
.+ ++.+++|+.|++++|
T Consensus 185 l~------l~~l~~L~~L~l~~N 201 (457)
T 3bz5_A 185 LD------VSQNKLLNRLNCDTN 201 (457)
T ss_dssp CC------CTTCTTCCEEECCSS
T ss_pred ec------cccCCCCCEEECcCC
Confidence 31 344556666666555
No 114
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.69 E-value=8.1e-16 Score=118.86 Aligned_cols=146 Identities=18% Similarity=0.125 Sum_probs=101.6
Q ss_pred cccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcC
Q 038633 9 SDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLK 88 (176)
Q Consensus 9 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~ 88 (176)
+.+..+++++.|++++|.+.+. .+..+.+|++|++++|.+++. + +..+++|++|++++|.+.. +| +..++
T Consensus 58 ~~l~~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~--l~--~~~l~ 127 (457)
T 3bz5_A 58 TGIEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK--LD--VSQNP 127 (457)
T ss_dssp TTGGGCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC--CC--CTTCT
T ss_pred hhhcccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe--ec--CCCCC
Confidence 3566677788888888777664 256667777777777777653 2 6667777777777777663 33 55666
Q ss_pred CccEEEeecccCCCCcc--------------------hhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCC
Q 038633 89 ELRYLNLSGSFFSGTIP--------------------QSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGA 148 (176)
Q Consensus 89 ~L~~L~l~~~~~~~~~p--------------------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n 148 (176)
+|++|++++|++.+ .+ -.++.+++|+.|++++|.++.. . +..+++|+.|++++|
T Consensus 128 ~L~~L~l~~N~l~~-l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l--~---l~~l~~L~~L~l~~N 201 (457)
T 3bz5_A 128 LLTYLNCARNTLTE-IDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITEL--D---VSQNKLLNRLNCDTN 201 (457)
T ss_dssp TCCEEECTTSCCSC-CCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCC--C---CTTCTTCCEEECCSS
T ss_pred cCCEEECCCCccce-eccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCcccee--c---cccCCCCCEEECcCC
Confidence 66666666666653 11 0244556677777777766432 1 678899999999999
Q ss_pred CCCCchhhhHHHhhccccCcEeeCcCCC
Q 038633 149 DLSKDAAYWLESISMLRSLVELRLPNCN 176 (176)
Q Consensus 149 ~l~~~~~~~~~~l~~~~~L~~L~l~~n~ 176 (176)
.+.+. .++.+++|+.|++++|+
T Consensus 202 ~l~~~------~l~~l~~L~~L~Ls~N~ 223 (457)
T 3bz5_A 202 NITKL------DLNQNIQLTFLDCSSNK 223 (457)
T ss_dssp CCSCC------CCTTCTTCSEEECCSSC
T ss_pred cCCee------ccccCCCCCEEECcCCc
Confidence 99865 35778999999999984
No 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.68 E-value=1.5e-16 Score=125.88 Aligned_cols=126 Identities=26% Similarity=0.238 Sum_probs=104.4
Q ss_pred cceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCCCCEEEc
Q 038633 40 FDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDL 119 (176)
Q Consensus 40 ~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l 119 (176)
.++.|++++|.+++ +|. +..+++|++|++++|.+. .+|..++.+++|++|++++|++. .+| .++.+++|+.|++
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~-~lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLL 515 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEEC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc--ccchhhhcCCCCCEEECCCCCCC-CCc-ccCCCCCCcEEEC
Confidence 47889999999975 566 889999999999999999 58889999999999999999998 467 7889999999999
Q ss_pred cCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeC
Q 038633 120 NNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRL 172 (176)
Q Consensus 120 ~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l 172 (176)
++|.++... .+..+..+++|+.|++++|.+.+.++.....+..+++|+.|++
T Consensus 516 s~N~l~~~~-~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 516 CNNRLQQSA-AIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CSSCCCSSS-TTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCC-CcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 999985331 1445788999999999999998776643334566889998874
No 116
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.68 E-value=2.9e-17 Score=133.29 Aligned_cols=120 Identities=23% Similarity=0.279 Sum_probs=100.7
Q ss_pred CcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCC
Q 038633 32 LAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNL 111 (176)
Q Consensus 32 ~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l 111 (176)
+..+..+..|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..+..+++|++|++++|.+. .+|..++.+
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 292 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT--ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC 292 (727)
T ss_dssp -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS--CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc--ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence 445677888999999999996 67777779999999999999999 58988999999999999999998 789889999
Q ss_pred CCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhH
Q 038633 112 TNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWL 158 (176)
Q Consensus 112 ~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 158 (176)
++|++|++++|.+... +..+..+++|++|+|++|.+.+.++..+
T Consensus 293 ~~L~~L~L~~N~l~~l---p~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 293 FQLKYFYFFDNMVTTL---PWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp TTCSEEECCSSCCCCC---CSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred CCCCEEECCCCCCCcc---ChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 9999999999988533 3348899999999999999998877643
No 117
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.66 E-value=1.6e-15 Score=119.93 Aligned_cols=136 Identities=15% Similarity=0.079 Sum_probs=84.0
Q ss_pred ccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEE
Q 038633 14 LSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYL 93 (176)
Q Consensus 14 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L 93 (176)
+++|+.|++++|.+.+ ++. +.. +|++|++++|.+++ +|. .+++|++|++++|.++. +|. .+++|++|
T Consensus 99 l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~--lp~---~l~~L~~L 165 (571)
T 3cvr_A 99 PASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM--LPE---LPTSLEVL 165 (571)
T ss_dssp CTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC--CCC---CCTTCCEE
T ss_pred cCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc--CCC---cCCCcCEE
Confidence 3455555555555544 222 211 55666666666654 343 45667777777776663 443 45677777
Q ss_pred EeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCc-------cEEeccCCCCCCchhhhHHHhhcccc
Q 038633 94 NLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSL-------KYLNLGGADLSKDAAYWLESISMLRS 166 (176)
Q Consensus 94 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L-------~~L~l~~n~l~~~~~~~~~~l~~~~~ 166 (176)
++++|++. .+|. +. ++|+.|++++|.++..+. +.. +| +.|++++|.+...+. .+..+++
T Consensus 166 ~Ls~N~L~-~lp~-l~--~~L~~L~Ls~N~L~~lp~----~~~--~L~~~~~~L~~L~Ls~N~l~~lp~----~l~~l~~ 231 (571)
T 3cvr_A 166 SVRNNQLT-FLPE-LP--ESLEALDVSTNLLESLPA----VPV--RNHHSEETEIFFRCRENRITHIPE----NILSLDP 231 (571)
T ss_dssp ECCSSCCS-CCCC-CC--TTCCEEECCSSCCSSCCC----CC----------CCEEEECCSSCCCCCCG----GGGGSCT
T ss_pred ECCCCCCC-Ccch-hh--CCCCEEECcCCCCCchhh----HHH--hhhcccccceEEecCCCcceecCH----HHhcCCC
Confidence 77777776 3565 44 778888888887753222 222 56 889999998885543 5566899
Q ss_pred CcEeeCcCCC
Q 038633 167 LVELRLPNCN 176 (176)
Q Consensus 167 L~~L~l~~n~ 176 (176)
|+.|++++|+
T Consensus 232 L~~L~L~~N~ 241 (571)
T 3cvr_A 232 TCTIILEDNP 241 (571)
T ss_dssp TEEEECCSSS
T ss_pred CCEEEeeCCc
Confidence 9999999884
No 118
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.66 E-value=1.3e-18 Score=120.39 Aligned_cols=155 Identities=21% Similarity=0.136 Sum_probs=123.9
Q ss_pred ccccccccceeeccCccccCCCCc------CcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhh
Q 038633 10 DLHLLSRIFALSLLRCCSVGSALA------QPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEF 83 (176)
Q Consensus 10 ~~~~~~~l~~l~l~~~~~~~~~~~------~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~ 83 (176)
.+...+.++.+++..+.+.+..+. .+..+.+|++|++++|.+++ +| .+..+++|++|++++|.+. .+|..
T Consensus 13 ~~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~--~l~~~ 88 (198)
T 1ds9_A 13 IFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK--KIENL 88 (198)
T ss_dssp HHHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC--SCSSH
T ss_pred HHHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc--cccch
Confidence 344566778888888887766555 66788899999999999976 66 8889999999999999999 57888
Q ss_pred hcCcCCccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhh-------
Q 038633 84 IGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAY------- 156 (176)
Q Consensus 84 ~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------- 156 (176)
+..+++|++|++++|++. ..| .+..+++|+.|++++|.+..... ...+..+++|++|++++|.+.+.++.
T Consensus 89 ~~~~~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~l~~N~i~~~~~-~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~ 165 (198)
T 1ds9_A 89 DAVADTLEELWISYNQIA-SLS-GIEKLVNLRVLYMSNNKITNWGE-IDKLAALDKLEDLLLAGNPLYNDYKENNATSEY 165 (198)
T ss_dssp HHHHHHCSEEEEEEEECC-CHH-HHHHHHHSSEEEESEEECCCHHH-HHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHH
T ss_pred hhcCCcCCEEECcCCcCC-cCC-ccccCCCCCEEECCCCcCCchhH-HHHHhcCCCCCEEEecCCccccccccccchHHH
Confidence 878899999999999998 455 67788999999999999854322 13478899999999999998765432
Q ss_pred hHHHhhccccCcEee
Q 038633 157 WLESISMLRSLVELR 171 (176)
Q Consensus 157 ~~~~l~~~~~L~~L~ 171 (176)
....+..+++|+.|+
T Consensus 166 ~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 166 RIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHHHHCSSCSEEC
T ss_pred HHHHHHhCCCcEEEC
Confidence 112467889999887
No 119
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.66 E-value=2.4e-17 Score=127.02 Aligned_cols=164 Identities=18% Similarity=0.019 Sum_probs=105.4
Q ss_pred ccccccceeeccCccccCCC-----CcCcccCCcceEeecCCCCcccc----chhhhcCCCCCcEEEccCccccCCcchh
Q 038633 12 HLLSRIFALSLLRCCSVGSA-----LAQPFRDSFDTYEDDAGHELGGP----ISPSLLQLKDLKYLDLSMNNFKGFKVPE 82 (176)
Q Consensus 12 ~~~~~l~~l~l~~~~~~~~~-----~~~~~~~~~l~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~p~ 82 (176)
..+++++.|++++|.+.... +.......+|++|++++|.+++. ++..+..+++|++|++++|.+... .+.
T Consensus 224 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~-~~~ 302 (461)
T 1z7x_W 224 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE-GAR 302 (461)
T ss_dssp HHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHH-HHH
T ss_pred HhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchH-HHH
Confidence 34567777777777664321 11122466778888888877654 566666788888888888877643 443
Q ss_pred hhcC-----cCCccEEEeecccCCCC----cchhccCCCCCCEEEccCCccCccc--ccccccC-CCCCccEEeccCCCC
Q 038633 83 FIGS-----LKELRYLNLSGSFFSGT----IPQSLGNLTNLLYLDLNNFLDQSNQ--IGLGWLS-GLPSLKYLNLGGADL 150 (176)
Q Consensus 83 ~~~~-----l~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~-~l~~L~~L~l~~n~l 150 (176)
.+.. .++|++|++++|.+... ++..+..+++|+.|++++|.+.... .....+. ..++|++|++++|.+
T Consensus 303 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i 382 (461)
T 1z7x_W 303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDV 382 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCC
Confidence 3332 25788888888887643 3555667788888888888773211 1111122 267889999999988
Q ss_pred CCchh-hhHHHhhccccCcEeeCcCCC
Q 038633 151 SKDAA-YWLESISMLRSLVELRLPNCN 176 (176)
Q Consensus 151 ~~~~~-~~~~~l~~~~~L~~L~l~~n~ 176 (176)
.+... ..+..+..+++|++|++++|+
T Consensus 383 ~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 383 SDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp CHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred ChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 75211 112266778899999998874
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.65 E-value=2.2e-16 Score=128.18 Aligned_cols=150 Identities=19% Similarity=0.101 Sum_probs=94.8
Q ss_pred cccceeeccCccccCCCCcCcccCCcc-----eEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCC
Q 038633 15 SRIFALSLLRCCSVGSALAQPFRDSFD-----TYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKE 89 (176)
Q Consensus 15 ~~l~~l~l~~~~~~~~~~~~~~~~~~l-----~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~ 89 (176)
+.++.|++.++.+... +........| ..+++..|.+. ..+..+..++.|+.|++++|.+. .+|..+..+++
T Consensus 173 ~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~--~l~~~~~~l~~ 248 (727)
T 4b8c_D 173 PLTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF--NISANIFKYDF 248 (727)
T ss_dssp ---------------------------------------------------CCCCCCEEECTTSCCS--CCCGGGGGCCS
T ss_pred CccceEEeeCCCCCcc-hhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC--CCChhhcCCCC
Confidence 4577788877766553 1211121112 22233334332 45777889999999999999998 58888889999
Q ss_pred ccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcE
Q 038633 90 LRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVE 169 (176)
Q Consensus 90 L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~ 169 (176)
|++|++++|.+. .+|..++.+++|+.|++++|.++.. +..+..+++|++|+|++|.+... |. .++.+++|+.
T Consensus 249 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~l---p~~~~~l~~L~~L~L~~N~l~~l-p~---~~~~l~~L~~ 320 (727)
T 4b8c_D 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSL---PAELGSCFQLKYFYFFDNMVTTL-PW---EFGNLCNLQF 320 (727)
T ss_dssp CSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSC---CSSGGGGTTCSEEECCSSCCCCC-CS---STTSCTTCCC
T ss_pred CCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCcc---ChhhcCCCCCCEEECCCCCCCcc-Ch---hhhcCCCccE
Confidence 999999999998 8899999999999999999999632 44588999999999999999754 54 6889999999
Q ss_pred eeCcCCC
Q 038633 170 LRLPNCN 176 (176)
Q Consensus 170 L~l~~n~ 176 (176)
|+|++|+
T Consensus 321 L~L~~N~ 327 (727)
T 4b8c_D 321 LGVEGNP 327 (727)
T ss_dssp EECTTSC
T ss_pred EeCCCCc
Confidence 9999984
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.62 E-value=2.9e-15 Score=118.53 Aligned_cols=124 Identities=20% Similarity=0.088 Sum_probs=105.4
Q ss_pred ccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEe
Q 038633 16 RIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNL 95 (176)
Q Consensus 16 ~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l 95 (176)
.++.|++++|.+.+. +. +..+.+|+.|++++|.++ .+|..+..+++|++|++++|.++ .+| .++.+++|++|++
T Consensus 442 ~L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~--~lp-~l~~l~~L~~L~L 515 (567)
T 1dce_A 442 DVRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE--NVD-GVANLPRLQELLL 515 (567)
T ss_dssp TCSEEECTTSCCSSC-CC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC--CCG-GGTTCSSCCEEEC
T ss_pred CceEEEecCCCCCCC-cC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC--CCc-ccCCCCCCcEEEC
Confidence 588999999998874 44 888899999999999997 78999999999999999999999 467 8899999999999
Q ss_pred ecccCCCCc-chhccCCCCCCEEEccCCccCccccc-ccccCCCCCccEEec
Q 038633 96 SGSFFSGTI-PQSLGNLTNLLYLDLNNFLDQSNQIG-LGWLSGLPSLKYLNL 145 (176)
Q Consensus 96 ~~~~~~~~~-p~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~l~~L~~L~l 145 (176)
++|++.+.. |..++.+++|+.|++++|+++..+.. ...+..+++|+.|++
T Consensus 516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 999998555 88999999999999999999543322 222445888998864
No 122
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.62 E-value=6e-15 Score=99.57 Aligned_cols=105 Identities=14% Similarity=0.022 Sum_probs=72.8
Q ss_pred cceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEee
Q 038633 17 IFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLS 96 (176)
Q Consensus 17 l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~ 96 (176)
.+.++++++.+...... . ...+++|++++|.+++..|..|.++++|++|++++|.+... .+..+..+++|++|+++
T Consensus 11 ~~~l~~s~n~l~~ip~~-~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTG-I--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL-PAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCSSCCSC-C--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCccCcc-C--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCcc-ChhhccCCCCCCEEECC
Confidence 35677777766553322 2 26677788888887776677777778888888888877754 44456677778888888
Q ss_pred cccCCCCcchhccCCCCCCEEEccCCccC
Q 038633 97 GSFFSGTIPQSLGNLTNLLYLDLNNFLDQ 125 (176)
Q Consensus 97 ~~~~~~~~p~~~~~l~~L~~L~l~~n~~~ 125 (176)
+|++.+..+..+..+++|+.|++++|++.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 88777444445777777777777777763
No 123
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.61 E-value=5.5e-16 Score=119.42 Aligned_cols=164 Identities=16% Similarity=0.045 Sum_probs=92.2
Q ss_pred ccccccceeeccCccccCCCCcC-----cccCCcceEeecCCCCcccc----chhhhcCCCCCcEEEccCccccCCcchh
Q 038633 12 HLLSRIFALSLLRCCSVGSALAQ-----PFRDSFDTYEDDAGHELGGP----ISPSLLQLKDLKYLDLSMNNFKGFKVPE 82 (176)
Q Consensus 12 ~~~~~l~~l~l~~~~~~~~~~~~-----~~~~~~l~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~p~ 82 (176)
..+++++.|++++|.+....... .....+|++|++++|.+++. ++..+..+++|++|++++|.+... .+.
T Consensus 110 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~-~~~ 188 (461)
T 1z7x_W 110 RTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEA-GVR 188 (461)
T ss_dssp TSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHH-HHH
T ss_pred ccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchH-HHH
Confidence 34555666666665553321111 11133466666666666543 244455567777777777766543 333
Q ss_pred hhc-----CcCCccEEEeecccCCCC----cchhccCCCCCCEEEccCCccCcccc--c-ccccCCCCCccEEeccCCCC
Q 038633 83 FIG-----SLKELRYLNLSGSFFSGT----IPQSLGNLTNLLYLDLNNFLDQSNQI--G-LGWLSGLPSLKYLNLGGADL 150 (176)
Q Consensus 83 ~~~-----~l~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~l~~n~~~~~~~--~-~~~~~~l~~L~~L~l~~n~l 150 (176)
.+. .+++|++|++++|.+... ++..+..+++|++|++++|.+..... . ...+..+++|++|++++|.+
T Consensus 189 ~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l 268 (461)
T 1z7x_W 189 VLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGI 268 (461)
T ss_dssp HHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCC
Confidence 332 245777777777777642 35556667778888888777632110 0 11123567788888888877
Q ss_pred CCchhh-hHHHhhccccCcEeeCcCCC
Q 038633 151 SKDAAY-WLESISMLRSLVELRLPNCN 176 (176)
Q Consensus 151 ~~~~~~-~~~~l~~~~~L~~L~l~~n~ 176 (176)
.+.... ....+..+++|++|++++|+
T Consensus 269 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 295 (461)
T 1z7x_W 269 TAKGCGDLCRVLRAKESLKELSLAGNE 295 (461)
T ss_dssp CHHHHHHHHHHHHHCTTCCEEECTTCC
T ss_pred CHHHHHHHHHHHhhCCCcceEECCCCC
Confidence 653211 12245667778888877763
No 124
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.60 E-value=2.4e-17 Score=113.96 Aligned_cols=128 Identities=23% Similarity=0.243 Sum_probs=105.6
Q ss_pred CcceEeecCCCCccccchh------hhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCC
Q 038633 39 SFDTYEDDAGHELGGPISP------SLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLT 112 (176)
Q Consensus 39 ~~l~~L~l~~n~l~~~~~~------~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~ 112 (176)
..++.++++.+.+++..|. .+..+++|++|++++|.+. .+| .+..+++|++|++++|.+. .+|..+..++
T Consensus 18 ~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~--~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~ 93 (198)
T 1ds9_A 18 KSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE--KIS-SLSGMENLRILSLGRNLIK-KIENLDAVAD 93 (198)
T ss_dssp TCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES--CCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHH
T ss_pred ccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc--ccc-ccccCCCCCEEECCCCCcc-cccchhhcCC
Confidence 3455566666666665555 8999999999999999999 466 8888999999999999998 7788777789
Q ss_pred CCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCCC
Q 038633 113 NLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN 176 (176)
Q Consensus 113 ~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n~ 176 (176)
+|+.|++++|.++..+ .+..+++|++|++++|.+.+.+.. ..+..+++|++|++++|+
T Consensus 94 ~L~~L~L~~N~l~~l~----~~~~l~~L~~L~l~~N~i~~~~~~--~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 94 TLEELWISYNQIASLS----GIEKLVNLRVLYMSNNKITNWGEI--DKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp HCSEEEEEEEECCCHH----HHHHHHHSSEEEESEEECCCHHHH--HHHTTTTTCSEEEECSCH
T ss_pred cCCEEECcCCcCCcCC----ccccCCCCCEEECCCCcCCchhHH--HHHhcCCCCCEEEecCCc
Confidence 9999999999985432 377889999999999999865541 367889999999999883
No 125
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.60 E-value=1.4e-14 Score=111.86 Aligned_cols=77 Identities=21% Similarity=0.295 Sum_probs=44.5
Q ss_pred CcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCCCCEEE
Q 038633 39 SFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLD 118 (176)
Q Consensus 39 ~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~ 118 (176)
.+|++|++++|.+++ +| .+.++++|++|++++|.+.+ +|.. ..+|++|++++|++. ..| .++.+++|+.|+
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~--lp~~---~~~L~~L~L~~n~l~-~l~-~~~~l~~L~~L~ 201 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK--LPDL---PPSLEFIAAGNNQLE-ELP-ELQNLPFLTAIY 201 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC--CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEE
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc--cCCC---cccccEEECcCCcCC-cCc-cccCCCCCCEEE
Confidence 456666666666654 44 46666666666666666662 3332 235666666666665 344 355666666666
Q ss_pred ccCCcc
Q 038633 119 LNNFLD 124 (176)
Q Consensus 119 l~~n~~ 124 (176)
+++|.+
T Consensus 202 l~~N~l 207 (454)
T 1jl5_A 202 ADNNSL 207 (454)
T ss_dssp CCSSCC
T ss_pred CCCCcC
Confidence 666555
No 126
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.59 E-value=1.3e-14 Score=114.70 Aligned_cols=115 Identities=19% Similarity=0.161 Sum_probs=59.8
Q ss_pred ccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEe
Q 038633 16 RIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNL 95 (176)
Q Consensus 16 ~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l 95 (176)
+++.|++++|.+.+ ++... ..+|++|++++|.++ .+| ..+++|++|++++|.++. +|. +.. +|++|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~--ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST--LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC--CCC-CCT--TCCEEEC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC--cch-hhc--CCCEEEC
Confidence 56666666666655 22222 245666666666665 344 335666666666666652 344 332 5666666
Q ss_pred ecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCC
Q 038633 96 SGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSK 152 (176)
Q Consensus 96 ~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 152 (176)
++|++. .+|. .+++|+.|++++|.++..+. .+++|++|++++|.+.+
T Consensus 128 s~N~l~-~lp~---~l~~L~~L~Ls~N~l~~lp~------~l~~L~~L~Ls~N~L~~ 174 (571)
T 3cvr_A 128 DNNQLT-MLPE---LPALLEYINADNNQLTMLPE------LPTSLEVLSVRNNQLTF 174 (571)
T ss_dssp CSSCCS-CCCC---CCTTCCEEECCSSCCSCCCC------CCTTCCEEECCSSCCSC
T ss_pred CCCcCC-CCCC---cCccccEEeCCCCccCcCCC------cCCCcCEEECCCCCCCC
Confidence 666555 2443 34555555555555532111 23445555555555443
No 127
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.59 E-value=8.7e-15 Score=98.76 Aligned_cols=108 Identities=23% Similarity=0.222 Sum_probs=91.1
Q ss_pred ceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCCCCEEEcc
Q 038633 41 DTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLN 120 (176)
Q Consensus 41 l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~ 120 (176)
.+.+++++|.++ .+|..+ .+.+++|++++|.+... .|..+..+++|++|++++|++.+..+..+..+++|+.|+++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKL-EPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCcc-ChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 357899999996 467655 48899999999999976 78889999999999999999985555667899999999999
Q ss_pred CCccCcccccccccCCCCCccEEeccCCCCCCch
Q 038633 121 NFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDA 154 (176)
Q Consensus 121 ~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 154 (176)
+|+++. .....+..+++|++|++++|.+....
T Consensus 87 ~N~l~~--~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 87 DNQLKS--IPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp SSCCCC--CCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CCccCE--eCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 999943 33445889999999999999997654
No 128
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.59 E-value=2.3e-14 Score=110.68 Aligned_cols=78 Identities=13% Similarity=0.072 Sum_probs=38.9
Q ss_pred cccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEE
Q 038633 15 SRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLN 94 (176)
Q Consensus 15 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~ 94 (176)
++++.|++++|.+.+ .+ .+..+.+|++|++++|.+++ +|.. ..+|++|++++|.+.+ +| .+..+++|++|+
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~--l~-~~~~l~~L~~L~ 201 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE--LP-ELQNLPFLTAIY 201 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS--CC-CCTTCTTCCEEE
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc--Cc-cccCCCCCCEEE
Confidence 355556666555554 22 35555556666666665543 3322 2355555555555542 33 344455555555
Q ss_pred eecccCC
Q 038633 95 LSGSFFS 101 (176)
Q Consensus 95 l~~~~~~ 101 (176)
+++|++.
T Consensus 202 l~~N~l~ 208 (454)
T 1jl5_A 202 ADNNSLK 208 (454)
T ss_dssp CCSSCCS
T ss_pred CCCCcCC
Confidence 5555444
No 129
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.58 E-value=2.1e-14 Score=97.24 Aligned_cols=104 Identities=13% Similarity=0.035 Sum_probs=70.7
Q ss_pred ceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeec
Q 038633 18 FALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSG 97 (176)
Q Consensus 18 ~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~ 97 (176)
+.++++++.+... |... ..++++|++++|.+++..|..|..+++|++|++++|.+... .+..+..+++|++|++++
T Consensus 15 ~~l~~~~n~l~~i-P~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLASV-PAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAI-PTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCCcc-CCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCcc-ChhHhCCcchhhEEECCC
Confidence 5677777666443 2222 26677778888877776677777777788888888877743 334456777788888887
Q ss_pred ccCCCCcchhccCCCCCCEEEccCCccC
Q 038633 98 SFFSGTIPQSLGNLTNLLYLDLNNFLDQ 125 (176)
Q Consensus 98 ~~~~~~~p~~~~~l~~L~~L~l~~n~~~ 125 (176)
|++....+..+..+++|++|++.+|++.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcc
Confidence 7777333334677777777777777764
No 130
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.58 E-value=1.4e-14 Score=98.18 Aligned_cols=108 Identities=22% Similarity=0.223 Sum_probs=90.3
Q ss_pred eEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCCCCEEEccC
Q 038633 42 TYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNN 121 (176)
Q Consensus 42 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~ 121 (176)
+.+++++|.++ .+|..+ .++|++|++++|.+... .|..+..+++|++|++++|++.+..+..+..+++|+.|++++
T Consensus 15 ~~l~~~~n~l~-~iP~~~--~~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGI--PTDKQRLWLNNNQITKL-EPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCc--CCCCcEEEeCCCCcccc-CHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 57899999995 677665 38999999999999976 788899999999999999999854444578999999999999
Q ss_pred CccCcccccccccCCCCCccEEeccCCCCCCchh
Q 038633 122 FLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAA 155 (176)
Q Consensus 122 n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 155 (176)
|.++. .....+..+++|++|++++|.+.....
T Consensus 91 N~l~~--l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 91 NHLKS--IPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp SCCCC--CCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred Cccce--eCHHHhccccCCCEEEeCCCCcccccc
Confidence 99953 333458899999999999999985543
No 131
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.58 E-value=3.9e-14 Score=113.09 Aligned_cols=75 Identities=20% Similarity=0.109 Sum_probs=53.1
Q ss_pred CCccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccC
Q 038633 88 KELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSL 167 (176)
Q Consensus 88 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L 167 (176)
++|+.|++++|++. .+| ..+++|+.|++++|.++..+. .+++|+.|++++|.+... |. .+..+++|
T Consensus 221 ~~L~~L~Ls~N~L~-~lp---~~l~~L~~L~Ls~N~L~~lp~------~~~~L~~L~Ls~N~L~~l-p~---~l~~l~~L 286 (622)
T 3g06_A 221 SGLKELIVSGNRLT-SLP---VLPSELKELMVSGNRLTSLPM------LPSGLLSLSVYRNQLTRL-PE---SLIHLSSE 286 (622)
T ss_dssp TTCCEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSCCCC------CCTTCCEEECCSSCCCSC-CG---GGGGSCTT
T ss_pred CCCCEEEccCCccC-cCC---CCCCcCcEEECCCCCCCcCCc------ccccCcEEeCCCCCCCcC-CH---HHhhcccc
Confidence 45666666666665 344 345677777777777642221 567899999999998854 44 67889999
Q ss_pred cEeeCcCCC
Q 038633 168 VELRLPNCN 176 (176)
Q Consensus 168 ~~L~l~~n~ 176 (176)
+.|++++|.
T Consensus 287 ~~L~L~~N~ 295 (622)
T 3g06_A 287 TTVNLEGNP 295 (622)
T ss_dssp CEEECCSCC
T ss_pred CEEEecCCC
Confidence 999999984
No 132
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.57 E-value=1.4e-14 Score=108.32 Aligned_cols=156 Identities=15% Similarity=-0.041 Sum_probs=101.6
Q ss_pred ccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccch-hhhcCCCCCcE-EEccCccccCCcchhhhcCcCCcc
Q 038633 14 LSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPIS-PSLLQLKDLKY-LDLSMNNFKGFKVPEFIGSLKELR 91 (176)
Q Consensus 14 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~-~~l~~l~~L~~-L~l~~~~~~~~~~p~~~~~l~~L~ 91 (176)
.++++.|++++|.|....+..+..+.+|++|++++|.+.+.++ .+|.+++++++ +.+++|.+... .|..+..+++|+
T Consensus 29 ~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l-~~~~f~~l~~L~ 107 (350)
T 4ay9_X 29 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYI-NPEAFQNLPNLQ 107 (350)
T ss_dssp CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEE-CTTSBCCCTTCC
T ss_pred CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccccc-Cchhhhhccccc
Confidence 3578899999998887666678888999999999998765554 45778887765 45566777754 566778888888
Q ss_pred EEEeecccCCCCcchhccCC--------------------------CCCCEEEccCCccCcccccccccCCCCCccEEec
Q 038633 92 YLNLSGSFFSGTIPQSLGNL--------------------------TNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNL 145 (176)
Q Consensus 92 ~L~l~~~~~~~~~p~~~~~l--------------------------~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l 145 (176)
+|++++|++....+..+... ..++.|++++|.++.... . .....+|+.+++
T Consensus 108 ~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~--~-~f~~~~L~~l~l 184 (350)
T 4ay9_X 108 YLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHN--S-AFNGTQLDELNL 184 (350)
T ss_dssp EEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECT--T-SSTTEEEEEEEC
T ss_pred cccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCCh--h-hccccchhHHhh
Confidence 88888888763222222122 235556666666532211 1 223345666666
Q ss_pred cC-CCCCCchhhhHHHhhccccCcEeeCcCCC
Q 038633 146 GG-ADLSKDAAYWLESISMLRSLVELRLPNCN 176 (176)
Q Consensus 146 ~~-n~l~~~~~~~~~~l~~~~~L~~L~l~~n~ 176 (176)
.+ |.+...++. .++.+++|++|++++|+
T Consensus 185 ~~~n~l~~i~~~---~f~~l~~L~~LdLs~N~ 213 (350)
T 4ay9_X 185 SDNNNLEELPND---VFHGASGPVILDISRTR 213 (350)
T ss_dssp TTCTTCCCCCTT---TTTTEECCSEEECTTSC
T ss_pred ccCCcccCCCHH---HhccCcccchhhcCCCC
Confidence 53 455444443 56677778888877764
No 133
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.56 E-value=1e-14 Score=108.96 Aligned_cols=104 Identities=14% Similarity=0.029 Sum_probs=80.0
Q ss_pred ceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchh-hhcCcCCccE-EEe
Q 038633 18 FALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPE-FIGSLKELRY-LNL 95 (176)
Q Consensus 18 ~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~-~~~~l~~L~~-L~l 95 (176)
++++.+++.+... |... ..++++|++++|.|+..-+.+|.++++|++|++++|.+... +|. .+..++++++ +.+
T Consensus 12 ~~v~C~~~~Lt~i-P~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~-i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVTEI-PSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV-IEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCCSC-CTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCE-ECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCCcc-CcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCc-cChhHhhcchhhhhhhcc
Confidence 4556666555543 3322 35789999999999866667899999999999999998754 554 5678888776 556
Q ss_pred ecccCCCCcchhccCCCCCCEEEccCCccC
Q 038633 96 SGSFFSGTIPQSLGNLTNLLYLDLNNFLDQ 125 (176)
Q Consensus 96 ~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~ 125 (176)
..|++....|..++.+++|+++++++|+++
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~ 117 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIK 117 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCS
T ss_pred cCCcccccCchhhhhccccccccccccccc
Confidence 678887555678899999999999999874
No 134
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.56 E-value=3.9e-16 Score=117.65 Aligned_cols=162 Identities=17% Similarity=0.029 Sum_probs=109.5
Q ss_pred ccccceeeccCccccCCCCcCc-----ccCCcceEeecCCCCccccchhhhc-CCCCCcEEEccCccccCCcchhhh---
Q 038633 14 LSRIFALSLLRCCSVGSALAQP-----FRDSFDTYEDDAGHELGGPISPSLL-QLKDLKYLDLSMNNFKGFKVPEFI--- 84 (176)
Q Consensus 14 ~~~l~~l~l~~~~~~~~~~~~~-----~~~~~l~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~p~~~--- 84 (176)
.+.++.|++++|.+........ ....+|++|++++|.+++.....+. .+++|++|++++|.+... ....+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~-~~~~L~~~ 149 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPE-ACKDLRDL 149 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHH-HHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHH-HHHHHHHH
Confidence 4578888998888754332221 1236788999999988765444443 467888999999988754 33333
Q ss_pred --cCcCCccEEEeecccCCC----CcchhccCCCCCCEEEccCCccCccc--ccccccCCCCCccEEeccCCCCCCchhh
Q 038633 85 --GSLKELRYLNLSGSFFSG----TIPQSLGNLTNLLYLDLNNFLDQSNQ--IGLGWLSGLPSLKYLNLGGADLSKDAAY 156 (176)
Q Consensus 85 --~~l~~L~~L~l~~~~~~~----~~p~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 156 (176)
...++|++|++++|.+.. .++..+...++|++|++++|.+.... .....+..+++|++|+|++|.+.+....
T Consensus 150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 235779999999998853 23344567888999999998873211 1123456677899999999988755432
Q ss_pred -hHHHhhccccCcEeeCcCCC
Q 038633 157 -WLESISMLRSLVELRLPNCN 176 (176)
Q Consensus 157 -~~~~l~~~~~L~~L~l~~n~ 176 (176)
+...+...+.|++|++++|.
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHHHhCCCCCEEeccCCC
Confidence 22345667889999998874
No 135
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.54 E-value=8.9e-14 Score=111.01 Aligned_cols=93 Identities=16% Similarity=0.087 Sum_probs=41.5
Q ss_pred cccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEE
Q 038633 15 SRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLN 94 (176)
Q Consensus 15 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~ 94 (176)
++++.|++++|.+.... . .+.+|++|++++|.++. +|. .+++|++|++++|.++. +|. .+++|+.|+
T Consensus 61 ~~L~~L~L~~N~l~~lp-~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~--l~~---~l~~L~~L~ 127 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLP-A---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTH--LPA---LPSGLCKLW 127 (622)
T ss_dssp TTCSEEEECSCCCSCCC-C---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCC--CCC---CCTTCCEEE
T ss_pred CCCcEEEecCCCCCCCC-C---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCC--CCC---CCCCcCEEE
Confidence 44555555555544321 1 34455555555555542 332 34555555555555442 222 233444444
Q ss_pred eecccCCCCcchhccCCCCCCEEEccCCcc
Q 038633 95 LSGSFFSGTIPQSLGNLTNLLYLDLNNFLD 124 (176)
Q Consensus 95 l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~ 124 (176)
+++|++. .+|.. +++|++|++++|.+
T Consensus 128 L~~N~l~-~lp~~---l~~L~~L~Ls~N~l 153 (622)
T 3g06_A 128 IFGNQLT-SLPVL---PPGLQELSVSDNQL 153 (622)
T ss_dssp CCSSCCS-CCCCC---CTTCCEEECCSSCC
T ss_pred CCCCCCC-cCCCC---CCCCCEEECcCCcC
Confidence 4444443 22321 24444445544444
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.45 E-value=8.8e-13 Score=97.70 Aligned_cols=103 Identities=17% Similarity=0.121 Sum_probs=63.8
Q ss_pred CCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCCCC-EEEccCCccCcccccccccCCCCCc
Q 038633 62 LKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLL-YLDLNNFLDQSNQIGLGWLSGLPSL 140 (176)
Q Consensus 62 l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~-~L~l~~n~~~~~~~~~~~~~~l~~L 140 (176)
+++|+++++++|.+... .+..|..+.+|+.+++.+| +....+..|.++++|+ .+++.. .+ ......+|.+|++|
T Consensus 225 ~~~L~~l~L~~n~i~~I-~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l--~~I~~~aF~~c~~L 299 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTI-PDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SV--TAIEFGAFMGCDNL 299 (329)
T ss_dssp CTTCCEEECTTBCCCEE-CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TC--CEECTTTTTTCTTE
T ss_pred cCCCeEEECCCCCccee-cHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cc--eEEchhhhhCCccC
Confidence 56677777777666643 3345666777777777666 4423334566677777 777765 33 23334457777777
Q ss_pred cEEeccCCCCCCchhhhHHHhhccccCcEeeC
Q 038633 141 KYLNLGGADLSKDAAYWLESISMLRSLVELRL 172 (176)
Q Consensus 141 ~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l 172 (176)
+.+++..|.+....+. ++..+++|+.+..
T Consensus 300 ~~l~l~~n~i~~I~~~---aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 300 RYVLATGDKITTLGDE---LFGNGVPSKLIYK 328 (329)
T ss_dssp EEEEECSSCCCEECTT---TTCTTCCCCEEEC
T ss_pred CEEEeCCCccCccchh---hhcCCcchhhhcc
Confidence 7777777777655554 5666677776653
No 137
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.44 E-value=9.6e-15 Score=110.09 Aligned_cols=157 Identities=15% Similarity=0.016 Sum_probs=111.5
Q ss_pred cccceeeccCccccCCCC-cCcccCCcceEeecCCCCccccchhhhc-----CCCCCcEEEccCccccCC---cchhhhc
Q 038633 15 SRIFALSLLRCCSVGSAL-AQPFRDSFDTYEDDAGHELGGPISPSLL-----QLKDLKYLDLSMNNFKGF---KVPEFIG 85 (176)
Q Consensus 15 ~~l~~l~l~~~~~~~~~~-~~~~~~~~l~~L~l~~n~l~~~~~~~l~-----~l~~L~~L~l~~~~~~~~---~~p~~~~ 85 (176)
++++.|++++|.+..... .....+.++++|++++|.+++.....+. ..+.|++|++++|.+... .++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 689999999998854322 2233456899999999999876555553 468899999999998753 1344557
Q ss_pred CcCCccEEEeecccCCCC----cchhccCCCCCCEEEccCCccCccc--ccccccCCCCCccEEeccCCCCCCchhhhHH
Q 038633 86 SLKELRYLNLSGSFFSGT----IPQSLGNLTNLLYLDLNNFLDQSNQ--IGLGWLSGLPSLKYLNLGGADLSKDAAYWLE 159 (176)
Q Consensus 86 ~l~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~l~~n~~~~~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 159 (176)
..++|++|++++|.+.+. ++..+...++|+.|++++|.+.... ....++...++|++|+|++|.+.+.....+.
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~ 260 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLR 260 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHH
Confidence 789999999999998642 2455677889999999999984322 2223355678999999999999866555333
Q ss_pred Hhhcccc--CcEee
Q 038633 160 SISMLRS--LVELR 171 (176)
Q Consensus 160 ~l~~~~~--L~~L~ 171 (176)
.+..... |+.+.
T Consensus 261 ~~~~~~~~~L~~l~ 274 (372)
T 3un9_A 261 DLGGAAEGGARVVV 274 (372)
T ss_dssp HCC------CEEEC
T ss_pred HHhcCCCccchhhH
Confidence 3222222 55555
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.44 E-value=5e-13 Score=99.01 Aligned_cols=82 Identities=16% Similarity=0.054 Sum_probs=65.4
Q ss_pred cCCccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCcc-EEeccCCCCCCchhhhHHHhhccc
Q 038633 87 LKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLK-YLNLGGADLSKDAAYWLESISMLR 165 (176)
Q Consensus 87 l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~l~~~~ 165 (176)
+++|+.+++++|++....+..|.++++|+.+++..| + ......+|.++.+|+ .+++.. .+....+. ++..++
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i--~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~---aF~~c~ 297 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-L--KTIGQRVFSNCGRLAGTLELPA-SVTAIEFG---AFMGCD 297 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-C--CEECTTTTTTCTTCCEEEEECT-TCCEECTT---TTTTCT
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-c--ceehHHHhhCChhccEEEEEcc-cceEEchh---hhhCCc
Confidence 678999999999887333456889999999999887 5 345556799999999 999988 66655554 788899
Q ss_pred cCcEeeCcCC
Q 038633 166 SLVELRLPNC 175 (176)
Q Consensus 166 ~L~~L~l~~n 175 (176)
+|+.+++.+|
T Consensus 298 ~L~~l~l~~n 307 (329)
T 3sb4_A 298 NLRYVLATGD 307 (329)
T ss_dssp TEEEEEECSS
T ss_pred cCCEEEeCCC
Confidence 9999998765
No 139
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.41 E-value=4.4e-13 Score=106.22 Aligned_cols=83 Identities=7% Similarity=-0.054 Sum_probs=48.1
Q ss_pred cccccceeeccCccccCC----CCcCcccCCcceEeecCCCCcc----ccchhhhcCCCCCcEEEccCccccCCcchhhh
Q 038633 13 LLSRIFALSLLRCCSVGS----ALAQPFRDSFDTYEDDAGHELG----GPISPSLLQLKDLKYLDLSMNNFKGFKVPEFI 84 (176)
Q Consensus 13 ~~~~l~~l~l~~~~~~~~----~~~~~~~~~~l~~L~l~~n~l~----~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~ 84 (176)
.+++|+.|++++|.+.+. .+.....++.|++|++++|.++ +.++..+.++++|++|++++|.+. .+|..+
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~--~l~~~~ 239 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL--ELVGFF 239 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG--GGHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH--HHHHHH
Confidence 456666666666665433 1122344556666666666664 234444556667777777776665 355555
Q ss_pred cCcCCccEEEeec
Q 038633 85 GSLKELRYLNLSG 97 (176)
Q Consensus 85 ~~l~~L~~L~l~~ 97 (176)
..+++|++|+++.
T Consensus 240 ~~~~~L~~L~l~~ 252 (592)
T 3ogk_B 240 KAAANLEEFCGGS 252 (592)
T ss_dssp HHCTTCCEEEECB
T ss_pred hhhhHHHhhcccc
Confidence 5666666666653
No 140
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.40 E-value=1.2e-12 Score=97.49 Aligned_cols=103 Identities=17% Similarity=-0.000 Sum_probs=72.9
Q ss_pred eeeccCc-cccCCCCcCcccCCcceEeecCC-CCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEee
Q 038633 19 ALSLLRC-CSVGSALAQPFRDSFDTYEDDAG-HELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLS 96 (176)
Q Consensus 19 ~l~l~~~-~~~~~~~~~~~~~~~l~~L~l~~-n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~ 96 (176)
.++.+++ .+.. +|. ...+.+|++|+|++ |.+++..+..|.++++|++|+|++|.+.+. .|..|..+++|++|+++
T Consensus 12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV-APDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEE-CTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCcccee-CHHHhcCCcCCCEEeCC
Confidence 4566665 4444 444 66677788888885 888777667788888888888888888865 66677788888888888
Q ss_pred cccCCCCcchhccCCCCCCEEEccCCccC
Q 038633 97 GSFFSGTIPQSLGNLTNLLYLDLNNFLDQ 125 (176)
Q Consensus 97 ~~~~~~~~p~~~~~l~~L~~L~l~~n~~~ 125 (176)
+|++....+..+..++ |+.|++.+|++.
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 8888733333444444 888888888774
No 141
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.40 E-value=2.1e-12 Score=96.13 Aligned_cols=103 Identities=21% Similarity=0.158 Sum_probs=74.5
Q ss_pred eecCCC-CccccchhhhcCCCCCcEEEccC-ccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCCCCEEEccC
Q 038633 44 EDDAGH-ELGGPISPSLLQLKDLKYLDLSM-NNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNN 121 (176)
Q Consensus 44 L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~ 121 (176)
++.+++ .++ .+|. +..+++|++|+|++ |.+... .+..+..+++|++|++++|++.+..|..|..+++|+.|++++
T Consensus 13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCc-ChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 566776 675 4677 77888888888885 888754 556777888888888888888755566777888888888888
Q ss_pred CccCcccccccccCCCCCccEEeccCCCCCC
Q 038633 122 FLDQSNQIGLGWLSGLPSLKYLNLGGADLSK 152 (176)
Q Consensus 122 n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 152 (176)
|.++..+ ...+..++ |+.|+|.+|.+.-
T Consensus 90 N~l~~~~--~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 90 NALESLS--WKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SCCSCCC--STTTCSCC-CCEEECCSSCCCC
T ss_pred CccceeC--HHHcccCC-ceEEEeeCCCccC
Confidence 8874322 23344444 8888888888763
No 142
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.31 E-value=1.4e-12 Score=103.30 Aligned_cols=134 Identities=10% Similarity=-0.033 Sum_probs=70.4
Q ss_pred cCCcceEeecCCCCcccc----chhhhcCCCCCcEEEccCccccCC---cchhhhcCcCCccEEEeecccCCCCcchhcc
Q 038633 37 RDSFDTYEDDAGHELGGP----ISPSLLQLKDLKYLDLSMNNFKGF---KVPEFIGSLKELRYLNLSGSFFSGTIPQSLG 109 (176)
Q Consensus 37 ~~~~l~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~~~~~~~---~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~ 109 (176)
.+++|++|++++|.+++. ++..+..+++|++|++++|.+.+. .++..+..+++|++|++++|.+. .+|..+.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~l~~~~~ 240 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-ELVGFFK 240 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG-GGHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH-HHHHHHh
Confidence 445666666666655443 333444566666666666665421 13334445666777777766665 3455555
Q ss_pred CCCCCCEEEccCCccCc------------------------ccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccc
Q 038633 110 NLTNLLYLDLNNFLDQS------------------------NQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLR 165 (176)
Q Consensus 110 ~l~~L~~L~l~~n~~~~------------------------~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~ 165 (176)
.+++|+.++++.+.... ....+..+..+++|++|++++|.+.+... ...++.++
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~--~~~~~~~~ 318 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDH--CTLIQKCP 318 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHH--HHHHTTCT
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHH--HHHHHhCc
Confidence 55666666664321100 00111223445567777777766543322 12356667
Q ss_pred cCcEeeCc
Q 038633 166 SLVELRLP 173 (176)
Q Consensus 166 ~L~~L~l~ 173 (176)
+|+.|+++
T Consensus 319 ~L~~L~L~ 326 (592)
T 3ogk_B 319 NLEVLETR 326 (592)
T ss_dssp TCCEEEEE
T ss_pred CCCEEecc
Confidence 77777665
No 143
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.25 E-value=3e-12 Score=101.37 Aligned_cols=162 Identities=16% Similarity=0.094 Sum_probs=109.0
Q ss_pred cccccccceeeccCccccCCCC---------------cCcccCCcceEeecCCCCccccchhhhc-CCCCCcEEEccCc-
Q 038633 11 LHLLSRIFALSLLRCCSVGSAL---------------AQPFRDSFDTYEDDAGHELGGPISPSLL-QLKDLKYLDLSMN- 73 (176)
Q Consensus 11 ~~~~~~l~~l~l~~~~~~~~~~---------------~~~~~~~~l~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~~- 73 (176)
+..+++++.|++.+|....... .......+|++|+++++.+++..+..+. .+++|++|++++|
T Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~ 141 (594)
T 2p1m_B 62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE 141 (594)
T ss_dssp HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE
T ss_pred HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC
Confidence 3456788999998875432111 0123567899999999998877777776 6899999999998
Q ss_pred cccCCcchhhhcCcCCccEEEeecccCCCCcchhc----cCCCCCCEEEccCCccCcc-cccccccCCCCCccEEeccCC
Q 038633 74 NFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSL----GNLTNLLYLDLNNFLDQSN-QIGLGWLSGLPSLKYLNLGGA 148 (176)
Q Consensus 74 ~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~----~~l~~L~~L~l~~n~~~~~-~~~~~~~~~l~~L~~L~l~~n 148 (176)
.+....++..+..+++|++|++++|.+.+..+..+ ..+++|+.|++.+|..... .........+++|++|++++|
T Consensus 142 ~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 142 GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 55532144445578999999999998765444333 3667999999998861101 111122345789999999988
Q ss_pred CCCCchhhhHHHhhccccCcEeeCcCC
Q 038633 149 DLSKDAAYWLESISMLRSLVELRLPNC 175 (176)
Q Consensus 149 ~l~~~~~~~~~~l~~~~~L~~L~l~~n 175 (176)
...+..+ ..+..+++|++|+++.+
T Consensus 222 ~~~~~l~---~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 222 VPLEKLA---TLLQRAPQLEELGTGGY 245 (594)
T ss_dssp SCHHHHH---HHHHHCTTCSEEECSBC
T ss_pred CcHHHHH---HHHhcCCcceEcccccc
Confidence 4322233 36677788888876543
No 144
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.22 E-value=1.1e-12 Score=103.98 Aligned_cols=134 Identities=16% Similarity=0.214 Sum_probs=72.7
Q ss_pred CCcceEeecCCCCccccchhhhc-CCCCCcEEEcc--C----ccccCC----cchhhhcCcCCccEEEeecccCCCCcch
Q 038633 38 DSFDTYEDDAGHELGGPISPSLL-QLKDLKYLDLS--M----NNFKGF----KVPEFIGSLKELRYLNLSGSFFSGTIPQ 106 (176)
Q Consensus 38 ~~~l~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~--~----~~~~~~----~~p~~~~~l~~L~~L~l~~~~~~~~~p~ 106 (176)
+.+|++|++..+.+++.....+. .+++|+.|+++ + +.++.. .++..+..+++|+.|++++ .+.+..+.
T Consensus 371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~ 449 (594)
T 2p1m_B 371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFE 449 (594)
T ss_dssp CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHH
T ss_pred chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHH
Confidence 44555555555555544444443 35666666666 2 333311 0122244556666666655 44333333
Q ss_pred hccC-CCCCCEEEccCCccCccccccccc-CCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCCC
Q 038633 107 SLGN-LTNLLYLDLNNFLDQSNQIGLGWL-SGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNCN 176 (176)
Q Consensus 107 ~~~~-l~~L~~L~l~~n~~~~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n~ 176 (176)
.+.. +++|+.|++++|.++. .....+ ..+++|++|++++|.+.+.... ..+..+++|+.|++++|+
T Consensus 450 ~l~~~~~~L~~L~L~~~~i~~--~~~~~l~~~~~~L~~L~L~~n~~~~~~~~--~~~~~l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 450 YIGTYAKKMEMLSVAFAGDSD--LGMHHVLSGCDSLRKLEIRDCPFGDKALL--ANASKLETMRSLWMSSCS 517 (594)
T ss_dssp HHHHHCTTCCEEEEESCCSSH--HHHHHHHHHCTTCCEEEEESCSCCHHHHH--HTGGGGGGSSEEEEESSC
T ss_pred HHHHhchhccEeeccCCCCcH--HHHHHHHhcCCCcCEEECcCCCCcHHHHH--HHHHhCCCCCEEeeeCCC
Confidence 3333 6777777777777622 111112 4577888888888887433322 234557888888888774
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.10 E-value=9e-10 Score=83.74 Aligned_cols=156 Identities=13% Similarity=0.057 Sum_probs=80.3
Q ss_pred cccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCcc--------------
Q 038633 9 SDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNN-------------- 74 (176)
Q Consensus 9 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~-------------- 74 (176)
..+..|++|+.+++.++.+.......+. ...|+.+.+..+ ++.....+|.++++|+.+++..+-
T Consensus 174 ~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~ 251 (401)
T 4fdw_A 174 DIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESGIT 251 (401)
T ss_dssp STTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTTCCCS
T ss_pred HHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCCccCccccccccCCcc
Confidence 4556677777777776655544333333 456666666533 545555666677777777766531
Q ss_pred -------ccCCcchhhhcCcCCccEEEeecccCC-----CCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccE
Q 038633 75 -------FKGFKVPEFIGSLKELRYLNLSGSFFS-----GTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKY 142 (176)
Q Consensus 75 -------~~~~~~p~~~~~l~~L~~L~l~~~~~~-----~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~ 142 (176)
+... .+..|..+.+|+.+.+.++.+. ...+..|.++++|+.+++.. .+ ......+|.+|.+|+.
T Consensus 252 ~i~lp~~i~~I-~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i--~~I~~~aF~~c~~L~~ 327 (401)
T 4fdw_A 252 TVKLPNGVTNI-ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SI--RILGQGLLGGNRKVTQ 327 (401)
T ss_dssp EEEEETTCCEE-CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TC--CEECTTTTTTCCSCCE
T ss_pred EEEeCCCccEE-ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ce--EEEhhhhhcCCCCccE
Confidence 1111 1233444555555555554432 12223445555555555552 23 2223344566666666
Q ss_pred EeccCCCCCCchhhhHHHhhccccCcEeeCcCC
Q 038633 143 LNLGGADLSKDAAYWLESISMLRSLVELRLPNC 175 (176)
Q Consensus 143 L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n 175 (176)
+++..+ +...... ++..+ +|+.+++.+|
T Consensus 328 l~lp~~-l~~I~~~---aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 328 LTIPAN-VTQINFS---AFNNT-GIKEVKVEGT 355 (401)
T ss_dssp EEECTT-CCEECTT---SSSSS-CCCEEEECCS
T ss_pred EEECcc-ccEEcHH---hCCCC-CCCEEEEcCC
Confidence 666443 3323332 45555 6666666554
No 146
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.09 E-value=8.1e-11 Score=80.27 Aligned_cols=113 Identities=16% Similarity=0.091 Sum_probs=48.5
Q ss_pred CCcceEeecCCC-Ccccc----chhhhcCCCCCcEEEccCccccCCc---chhhhcCcCCccEEEeecccCCCC----cc
Q 038633 38 DSFDTYEDDAGH-ELGGP----ISPSLLQLKDLKYLDLSMNNFKGFK---VPEFIGSLKELRYLNLSGSFFSGT----IP 105 (176)
Q Consensus 38 ~~~l~~L~l~~n-~l~~~----~~~~l~~l~~L~~L~l~~~~~~~~~---~p~~~~~l~~L~~L~l~~~~~~~~----~p 105 (176)
...+++|++++| .+.+. +...+...+.|++|++++|.+.... +...+...++|++|++++|.+... +.
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~ 114 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALV 114 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHH
Confidence 444555555555 55432 2233334455555555555554320 112233334555555555555421 12
Q ss_pred hhccCCCCCCEEEc--cCCccCccc--ccccccCCCCCccEEeccCCCC
Q 038633 106 QSLGNLTNLLYLDL--NNFLDQSNQ--IGLGWLSGLPSLKYLNLGGADL 150 (176)
Q Consensus 106 ~~~~~l~~L~~L~l--~~n~~~~~~--~~~~~~~~l~~L~~L~l~~n~l 150 (176)
..+...++|+.|++ .+|.+.... .....+...++|++|++++|.+
T Consensus 115 ~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 115 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 33334445555555 444442111 1112233344555555555544
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.96 E-value=4.8e-10 Score=84.07 Aligned_cols=135 Identities=18% Similarity=0.139 Sum_probs=70.7
Q ss_pred ccCCcceEeecCCCC-ccccchhhhcCCCCCcEEEccCccccCCcchhhhc--CcCCccEEEeecc--cC-CC----Ccc
Q 038633 36 FRDSFDTYEDDAGHE-LGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIG--SLKELRYLNLSGS--FF-SG----TIP 105 (176)
Q Consensus 36 ~~~~~l~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~--~l~~L~~L~l~~~--~~-~~----~~p 105 (176)
..+++|+.|.++++. + .++. + .+++|+.|++..|.+... ....+. .+++|++|+++.+ .. .. .+.
T Consensus 169 ~~~P~L~~L~L~g~~~l--~l~~-~-~~~~L~~L~L~~~~l~~~-~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNL--SIGK-K-PRPNLKSLEIISGGLPDS-VVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HTCTTCCEEEEECCBTC--BCCS-C-BCTTCSEEEEECSBCCHH-HHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred hcCCCCcEEEEeCCCCc--eecc-c-cCCCCcEEEEecCCCChH-HHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 344567777776662 2 1222 2 267777777777766543 333333 5677777776521 11 10 011
Q ss_pred hhc--cCCCCCCEEEccCCccCccc-ccccccCCCCCccEEeccCCCCCCchhhhH-HHhhccccCcEeeCcCC
Q 038633 106 QSL--GNLTNLLYLDLNNFLDQSNQ-IGLGWLSGLPSLKYLNLGGADLSKDAAYWL-ESISMLRSLVELRLPNC 175 (176)
Q Consensus 106 ~~~--~~l~~L~~L~l~~n~~~~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~~~~L~~L~l~~n 175 (176)
..+ ..+++|+.|++.+|.+.... ........+++|++|+|+.|.+.+.....+ ..+..+++|+.|+++.|
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 112 23577777777776662111 000011246677777777777665433211 13355677777777765
No 148
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.96 E-value=2.6e-10 Score=77.74 Aligned_cols=126 Identities=12% Similarity=0.070 Sum_probs=93.1
Q ss_pred ccccchhhhcCCCCCcEEEccCc-cccCC---cchhhhcCcCCccEEEeecccCCCC----cchhccCCCCCCEEEccCC
Q 038633 51 LGGPISPSLLQLKDLKYLDLSMN-NFKGF---KVPEFIGSLKELRYLNLSGSFFSGT----IPQSLGNLTNLLYLDLNNF 122 (176)
Q Consensus 51 l~~~~~~~l~~l~~L~~L~l~~~-~~~~~---~~p~~~~~l~~L~~L~l~~~~~~~~----~p~~~~~l~~L~~L~l~~n 122 (176)
+...+...+...+.|++|++++| .+... .+...+...++|++|++++|.+... +...+...++|++|++++|
T Consensus 24 ~~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 24 VEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp HHHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC
Confidence 34456777888999999999999 87743 1334556678999999999999742 2344556689999999999
Q ss_pred ccCccc--ccccccCCCCCccEEec--cCCCCCCchhh-hHHHhhccccCcEeeCcCCC
Q 038633 123 LDQSNQ--IGLGWLSGLPSLKYLNL--GGADLSKDAAY-WLESISMLRSLVELRLPNCN 176 (176)
Q Consensus 123 ~~~~~~--~~~~~~~~l~~L~~L~l--~~n~l~~~~~~-~~~~l~~~~~L~~L~l~~n~ 176 (176)
.+.... ....++...++|++|+| ++|.+.+.... ....+...+.|++|++++|.
T Consensus 104 ~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 104 FISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp CCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred cCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 984321 22345677889999999 88999765433 22356677899999999884
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.93 E-value=5.6e-09 Score=79.36 Aligned_cols=154 Identities=11% Similarity=0.021 Sum_probs=106.8
Q ss_pred cccccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCcccc-----CCcchhh
Q 038633 9 SDLHLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFK-----GFKVPEF 83 (176)
Q Consensus 9 ~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~-----~~~~p~~ 83 (176)
..+..|++|+.+.+.++ +.......+.. ..|+.+.+ .+.++.....+|.++++|+.+.+.++.+. .. .+..
T Consensus 220 ~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I-~~~a 295 (401)
T 4fdw_A 220 QAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMI-HPYC 295 (401)
T ss_dssp TTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEE-CTTT
T ss_pred hHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEE-CHHH
Confidence 34555667777777652 33222233333 66777777 34566666788999999999999988765 23 4567
Q ss_pred hcCcCCccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhc
Q 038633 84 IGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISM 163 (176)
Q Consensus 84 ~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 163 (176)
|..+++|+.+.+.+ .+.......|.++++|+.+.+..+ + ......+|.++ +|+.+++.+|.+...... .+..
T Consensus 296 F~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l--~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~---~F~~ 367 (401)
T 4fdw_A 296 LEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-V--TQINFSAFNNT-GIKEVKVEGTTPPQVFEK---VWYG 367 (401)
T ss_dssp TTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-C--CEECTTSSSSS-CCCEEEECCSSCCBCCCS---SCCC
T ss_pred hhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-c--cEEcHHhCCCC-CCCEEEEcCCCCcccccc---cccC
Confidence 88899999999985 465344467888999999999665 4 33445668999 999999999987765544 4555
Q ss_pred cc-cCcEeeCcC
Q 038633 164 LR-SLVELRLPN 174 (176)
Q Consensus 164 ~~-~L~~L~l~~ 174 (176)
++ .++.|.+..
T Consensus 368 ~~~~l~~l~vp~ 379 (401)
T 4fdw_A 368 FPDDITVIRVPA 379 (401)
T ss_dssp SCTTCCEEEECG
T ss_pred CCCCccEEEeCH
Confidence 53 667776654
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.93 E-value=9e-10 Score=82.61 Aligned_cols=157 Identities=11% Similarity=0.111 Sum_probs=98.8
Q ss_pred ccccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhc--CCCCCcEEEccCc--cccCC----cchhh
Q 038633 12 HLLSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLL--QLKDLKYLDLSMN--NFKGF----KVPEF 83 (176)
Q Consensus 12 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~--~l~~L~~L~l~~~--~~~~~----~~p~~ 83 (176)
..+++|+.|++.+|.-.. .+ . ....+|++|++..+.++......+. .+++|+.|+++.+ ...+. .+...
T Consensus 169 ~~~P~L~~L~L~g~~~l~-l~-~-~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~ 245 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNLS-IG-K-KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245 (362)
T ss_dssp HTCTTCCEEEEECCBTCB-CC-S-CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred hcCCCCcEEEEeCCCCce-ec-c-ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence 346788899888763211 11 1 3478899999998888766555555 7899999998532 21110 01122
Q ss_pred h--cCcCCccEEEeecccCCCCcchhcc---CCCCCCEEEccCCccCccc--ccccccCCCCCccEEeccCCCCCCchhh
Q 038633 84 I--GSLKELRYLNLSGSFFSGTIPQSLG---NLTNLLYLDLNNFLDQSNQ--IGLGWLSGLPSLKYLNLGGADLSKDAAY 156 (176)
Q Consensus 84 ~--~~l~~L~~L~l~~~~~~~~~p~~~~---~l~~L~~L~l~~n~~~~~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 156 (176)
+ ..+++|++|++.+|.+.+..+..+. .+++|+.|+++.|.+.... .....+.++++|+.|+++.|.+.+....
T Consensus 246 l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~ 325 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKK 325 (362)
T ss_dssp SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHH
T ss_pred HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHH
Confidence 2 2478999999999888643333332 5788999999998874321 1111234678899999999988754433
Q ss_pred hHHHhhccccCcEeeCcCC
Q 038633 157 WLESISMLRSLVELRLPNC 175 (176)
Q Consensus 157 ~~~~l~~~~~L~~L~l~~n 175 (176)
.+...- ..+++++++
T Consensus 326 ---~l~~al-g~~~~~~~~ 340 (362)
T 2ra8_A 326 ---ELQKSL-PMKIDVSDS 340 (362)
T ss_dssp ---HHHHHC-CSEEECCSB
T ss_pred ---HHHHHc-CCEEEecCC
Confidence 333211 355777664
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.82 E-value=5e-09 Score=70.47 Aligned_cols=34 Identities=9% Similarity=-0.146 Sum_probs=17.5
Q ss_pred cceEeecCCCCccccchhhhcCCCCCcEEEccCc
Q 038633 40 FDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMN 73 (176)
Q Consensus 40 ~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~ 73 (176)
.|++||++++.+++..-..+.++++|+.|++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 4555555555555444444445555555555555
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.78 E-value=6.2e-09 Score=70.03 Aligned_cols=104 Identities=16% Similarity=0.172 Sum_probs=74.5
Q ss_pred CCCCcEEEccCccccCCcchhhhcCcCCccEEEeeccc-CCCCcchhccCC----CCCCEEEccCCc-cCcccccccccC
Q 038633 62 LKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSF-FSGTIPQSLGNL----TNLLYLDLNNFL-DQSNQIGLGWLS 135 (176)
Q Consensus 62 l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~-~~~~~p~~~~~l----~~L~~L~l~~n~-~~~~~~~~~~~~ 135 (176)
-..|+.||+++|.++.. .-..+..+++|++|++++|. +++..-..+..+ ++|++|++++|. ++ ......+.
T Consensus 60 ~~~L~~LDLs~~~Itd~-GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT--D~Gl~~L~ 136 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSI-GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT--DKGIIALH 136 (176)
T ss_dssp CCCEEEEEEESCCCCGG-GGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC--HHHHHHGG
T ss_pred CceEeEEeCcCCCccHH-HHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC--HHHHHHHh
Confidence 45799999999998876 66778899999999999995 664444556554 479999999986 53 22333467
Q ss_pred CCCCccEEeccCCCCCCchhhhHHHh-hccccCc
Q 038633 136 GLPSLKYLNLGGADLSKDAAYWLESI-SMLRSLV 168 (176)
Q Consensus 136 ~l~~L~~L~l~~n~l~~~~~~~~~~l-~~~~~L~ 168 (176)
++++|++|+++++.-.+........+ ..+|+++
T Consensus 137 ~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 137 HFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp GCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred cCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence 89999999999987444433212223 3556654
No 153
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.74 E-value=2.6e-09 Score=76.74 Aligned_cols=100 Identities=19% Similarity=0.136 Sum_probs=67.7
Q ss_pred eecCCCCc---cccchhhhcCCCCCcEEEccCccccCCc-chhhhcCcCCccEEEeecccCCCC-cchhccCCCCCCEEE
Q 038633 44 EDDAGHEL---GGPISPSLLQLKDLKYLDLSMNNFKGFK-VPEFIGSLKELRYLNLSGSFFSGT-IPQSLGNLTNLLYLD 118 (176)
Q Consensus 44 L~l~~n~l---~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~p~~~~~l~~L~~L~l~~~~~~~~-~p~~~~~l~~L~~L~ 118 (176)
++++.|.. ....+.....+++|++|++++|.+.+.. +|..+..+++|+.|++++|++.+. ....+..+ +|+.|+
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~ 226 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELW 226 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEE
Confidence 56666743 2222233356899999999999998631 446677899999999999999743 11233344 899999
Q ss_pred ccCCccCcc-----cccccccCCCCCccEEe
Q 038633 119 LNNFLDQSN-----QIGLGWLSGLPSLKYLN 144 (176)
Q Consensus 119 l~~n~~~~~-----~~~~~~~~~l~~L~~L~ 144 (176)
+.+|++... ......+..+++|+.||
T Consensus 227 L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 227 LDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp CTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred ccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 999998421 11123467788999885
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.70 E-value=6.5e-09 Score=74.66 Aligned_cols=86 Identities=24% Similarity=0.233 Sum_probs=64.6
Q ss_pred cCcCCccEEEeecccCCC--CcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchh---hh-H
Q 038633 85 GSLKELRYLNLSGSFFSG--TIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAA---YW-L 158 (176)
Q Consensus 85 ~~l~~L~~L~l~~~~~~~--~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~-~ 158 (176)
..+++|+.|++++|++.+ .+|..+..+++|+.|++++|.++.... ...+..+ +|++|+|++|.+.+..+ .. .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~-l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERE-LDKIKGL-KLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGG-GGGGTTS-CCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchh-hhhcccC-CcceEEccCCcCccccCcchhHHH
Confidence 357899999999999985 344667789999999999999965422 2234455 89999999999986332 11 1
Q ss_pred HHhhccccCcEeeC
Q 038633 159 ESISMLRSLVELRL 172 (176)
Q Consensus 159 ~~l~~~~~L~~L~l 172 (176)
..+..+|+|+.||=
T Consensus 245 ~il~~~P~L~~LDg 258 (267)
T 3rw6_A 245 AIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHCTTCCEESS
T ss_pred HHHHHCcccCeECC
Confidence 35678899998873
No 155
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.25 E-value=1.2e-06 Score=59.94 Aligned_cols=121 Identities=13% Similarity=0.050 Sum_probs=51.2
Q ss_pred chhhhcCCCCCcEEEccCc-cccCC---cchhhhcCcCCccEEEeecccCCC----CcchhccCCCCCCEEEccCCccCc
Q 038633 55 ISPSLLQLKDLKYLDLSMN-NFKGF---KVPEFIGSLKELRYLNLSGSFFSG----TIPQSLGNLTNLLYLDLNNFLDQS 126 (176)
Q Consensus 55 ~~~~l~~l~~L~~L~l~~~-~~~~~---~~p~~~~~l~~L~~L~l~~~~~~~----~~p~~~~~l~~L~~L~l~~n~~~~ 126 (176)
+...+..-+.|++|+++++ .+... .+.+.+..-+.|+.|++++|++.+ .+.+.+..-+.|++|++++|.+..
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence 3333444455555555543 33321 022233334455555555555532 222233334555555555555521
Q ss_pred cc--ccccccCCCCCccEEeccCC---CCCCchh-hhHHHhhccccCcEeeCcCC
Q 038633 127 NQ--IGLGWLSGLPSLKYLNLGGA---DLSKDAA-YWLESISMLRSLVELRLPNC 175 (176)
Q Consensus 127 ~~--~~~~~~~~l~~L~~L~l~~n---~l~~~~~-~~~~~l~~~~~L~~L~l~~n 175 (176)
.. ....++..-+.|++|+|++| .+..... .....+..-+.|+.|+++.|
T Consensus 113 ~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 113 ELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 11 11123444445566665543 2221111 11223444455555555543
No 156
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.17 E-value=2e-05 Score=59.10 Aligned_cols=128 Identities=10% Similarity=-0.038 Sum_probs=75.5
Q ss_pred ccccceeeccCccccCCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEE
Q 038633 14 LSRIFALSLLRCCSVGSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYL 93 (176)
Q Consensus 14 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L 93 (176)
+..+..+.+.. .+.......+..+..|+.+.+..+ ++......|.++..|+.+.+..+ +... ....+..+.+|+.+
T Consensus 216 ~~~l~~i~~~~-~~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i-~~~aF~~c~~L~~i 291 (379)
T 4h09_A 216 GKNLKKITITS-GVTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTV-PYLLCSGCSNLTKV 291 (379)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEE-CTTTTTTCTTCCEE
T ss_pred ccccceeeecc-ceeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceec-cccccccccccccc
Confidence 34444444433 222222334556666777776554 44455566777777777777554 3322 33456677778888
Q ss_pred EeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCCCccEEeccCC
Q 038633 94 NLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGA 148 (176)
Q Consensus 94 ~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n 148 (176)
.+.++.+...-...|.++.+|+.+.+..+ + ......+|.+|.+|+.+.+..+
T Consensus 292 ~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l--~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 292 VMDNSAIETLEPRVFMDCVKLSSVTLPTA-L--KTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp EECCTTCCEECTTTTTTCTTCCEEECCTT-C--CEECTTTTTTCTTCCCCCCCTT
T ss_pred cccccccceehhhhhcCCCCCCEEEcCcc-c--cEEHHHHhhCCCCCCEEEECCc
Confidence 77777665333456777777888877543 3 2233455777778877777654
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.12 E-value=3.8e-05 Score=57.58 Aligned_cols=130 Identities=12% Similarity=0.048 Sum_probs=90.4
Q ss_pred cccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCCC
Q 038633 35 PFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNL 114 (176)
Q Consensus 35 ~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L 114 (176)
+.....++.+.+..+ ++......+.++..|+.+.+..+ +... ....+..+.+|+.+.+..+ +.......|..+++|
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I-~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L 288 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSI-GSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNL 288 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEE-CTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTC
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEe-Cccccceeehhcccccccc-ceecccccccccccc
Confidence 444556666666544 33455667788889999988776 4433 4456777888999988654 432333567889999
Q ss_pred CEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcC
Q 038633 115 LYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPN 174 (176)
Q Consensus 115 ~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~ 174 (176)
+.+.+..+.++ .....+|.+|.+|+.+.+..+ +...... ++..+.+|+.+.+..
T Consensus 289 ~~i~l~~~~i~--~I~~~aF~~c~~L~~i~lp~~-l~~I~~~---aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 289 TKVVMDNSAIE--TLEPRVFMDCVKLSSVTLPTA-LKTIQVY---AFKNCKALSTISYPK 342 (379)
T ss_dssp CEEEECCTTCC--EECTTTTTTCTTCCEEECCTT-CCEECTT---TTTTCTTCCCCCCCT
T ss_pred ccccccccccc--eehhhhhcCCCCCCEEEcCcc-ccEEHHH---HhhCCCCCCEEEECC
Confidence 99999887773 344456999999999999765 4434343 677888898887754
No 158
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.11 E-value=3e-06 Score=57.94 Aligned_cols=115 Identities=13% Similarity=0.065 Sum_probs=81.7
Q ss_pred ccCCcceEeecCCC-Ccccc----chhhhcCCCCCcEEEccCccccCC---cchhhhcCcCCccEEEeecccCCCC----
Q 038633 36 FRDSFDTYEDDAGH-ELGGP----ISPSLLQLKDLKYLDLSMNNFKGF---KVPEFIGSLKELRYLNLSGSFFSGT---- 103 (176)
Q Consensus 36 ~~~~~l~~L~l~~n-~l~~~----~~~~l~~l~~L~~L~l~~~~~~~~---~~p~~~~~l~~L~~L~l~~~~~~~~---- 103 (176)
.....|++|+++++ .+.++ +...+..-+.|+.|+|++|.+... .+.+.+..-..|++|++++|++...
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 44567899999986 87654 445566778899999999998854 1334454558899999999999742
Q ss_pred cchhccCCCCCCEEEccCCcc-Cccc----ccccccCCCCCccEEeccCCCC
Q 038633 104 IPQSLGNLTNLLYLDLNNFLD-QSNQ----IGLGWLSGLPSLKYLNLGGADL 150 (176)
Q Consensus 104 ~p~~~~~l~~L~~L~l~~n~~-~~~~----~~~~~~~~l~~L~~L~l~~n~l 150 (176)
+.+.+..-+.|+.|++.+|.. .... ....++..-+.|+.|+++.|.+
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 334556678899999986533 2121 2234466778999999987764
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.10 E-value=2.9e-05 Score=58.65 Aligned_cols=132 Identities=9% Similarity=0.086 Sum_probs=85.3
Q ss_pred CCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccC
Q 038633 31 ALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGN 110 (176)
Q Consensus 31 ~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~ 110 (176)
....+..+..|+.+.+..+.. ......|.+++.|+.+.+.. .+... ....|..+.+|+.+.+..+ +......+|.+
T Consensus 257 ~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~-~i~~I-~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~ 332 (394)
T 4gt6_A 257 ETHAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFSS-RITEL-PESVFAGCISLKSIDIPEG-ITQILDDAFAG 332 (394)
T ss_dssp CTTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECCT-TCCEE-CTTTTTTCTTCCEEECCTT-CCEECTTTTTT
T ss_pred ccceeeecccccEEecccccc-eecCcccccccccccccCCC-ccccc-CceeecCCCCcCEEEeCCc-ccEehHhHhhC
Confidence 344667778888888876544 45567788899999998864 34433 4456778889999988764 43233456888
Q ss_pred CCCCCEEEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCC
Q 038633 111 LTNLLYLDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNC 175 (176)
Q Consensus 111 l~~L~~L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n 175 (176)
+.+|+.+.+..+ + ......+|.+|.+|+.+++.++... ...+....+|+.+.+..+
T Consensus 333 C~~L~~i~ip~s-v--~~I~~~aF~~C~~L~~i~~~~~~~~------~~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 333 CEQLERIAIPSS-V--TKIPESAFSNCTALNNIEYSGSRSQ------WNAISTDSGLQNLPVAPG 388 (394)
T ss_dssp CTTCCEEEECTT-C--CBCCGGGGTTCTTCCEEEESSCHHH------HHTCBCCCCC--------
T ss_pred CCCCCEEEECcc-c--CEEhHhHhhCCCCCCEEEECCceee------hhhhhccCCCCEEEeCCC
Confidence 899999998654 3 3344456899999999998876421 124455677777776543
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.04 E-value=3.2e-05 Score=58.36 Aligned_cols=83 Identities=19% Similarity=0.103 Sum_probs=34.6
Q ss_pred hcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCCCCEEEccCCccCcccccccccCCCC
Q 038633 59 LLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIGLGWLSGLP 138 (176)
Q Consensus 59 l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~ 138 (176)
|..+.+|+.+.+..+ +..+ ...++..+.+|+.+++..+ +......+|.++.+|+.+++..+ + ......+|.+|.
T Consensus 293 F~~~~~L~~i~l~~~-i~~I-~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l--~~I~~~aF~~C~ 366 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VKFI-GEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-L--RKIGANAFQGCI 366 (394)
T ss_dssp TTTCTTCCEEEECTT-CCEE-CTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-C--CEECTTTBTTCT
T ss_pred ccccccccccccccc-ccee-chhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-c--cEehHHHhhCCC
Confidence 334444444444433 2211 2233444455555554432 22122234444555555555433 2 122223355555
Q ss_pred CccEEeccC
Q 038633 139 SLKYLNLGG 147 (176)
Q Consensus 139 ~L~~L~l~~ 147 (176)
+|+.+++..
T Consensus 367 ~L~~i~lp~ 375 (394)
T 4fs7_A 367 NLKKVELPK 375 (394)
T ss_dssp TCCEEEEEG
T ss_pred CCCEEEECC
Confidence 555555543
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.03 E-value=4.8e-05 Score=57.42 Aligned_cols=125 Identities=18% Similarity=0.077 Sum_probs=76.8
Q ss_pred cCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCCCCE
Q 038633 37 RDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLY 116 (176)
Q Consensus 37 ~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~ 116 (176)
.+..++.+.+..+.. ......|..+..++........+. ...+..+.+|+.+.+..+ +......+|..+.+|+.
T Consensus 251 ~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i~----~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~ 324 (394)
T 4fs7_A 251 GCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIVP----EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVS 324 (394)
T ss_dssp TCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEEC----TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCE
T ss_pred ccccceeEEcCCCcc-eeeccccccccccceeccCceeec----cccccccccccccccccc-cceechhhhcCCCCCCE
Confidence 333444444433322 233344445555555544433221 234556788888888765 43233456788899999
Q ss_pred EEccCCccCcccccccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcC
Q 038633 117 LDLNNFLDQSNQIGLGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPN 174 (176)
Q Consensus 117 L~l~~n~~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~ 174 (176)
+++..+ + ......+|.+|.+|+.+++..+ +...... ++..+++|+.+++..
T Consensus 325 i~lp~~-v--~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~---aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 325 IDLPYL-V--EEIGKRSFRGCTSLSNINFPLS-LRKIGAN---AFQGCINLKKVELPK 375 (394)
T ss_dssp ECCCTT-C--CEECTTTTTTCTTCCEECCCTT-CCEECTT---TBTTCTTCCEEEEEG
T ss_pred EEeCCc-c--cEEhHHhccCCCCCCEEEECcc-ccEehHH---HhhCCCCCCEEEECC
Confidence 999654 4 3344566999999999999876 5544443 778889999988754
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.03 E-value=2.8e-05 Score=58.71 Aligned_cols=115 Identities=10% Similarity=0.042 Sum_probs=76.5
Q ss_pred ccccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCCCCEEEccCCccCccccc
Q 038633 51 LGGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNNFLDQSNQIG 130 (176)
Q Consensus 51 l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~ 130 (176)
++.....+|.++..|+.+.+..+... . ....+..+..|+.+.+.. .+...-...|.++.+|+.+++..+ + ....
T Consensus 253 v~~i~~~aF~~c~~L~~i~lp~~~~~-I-~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v--~~I~ 326 (394)
T 4gt6_A 253 VARIETHAFDSCAYLASVKMPDSVVS-I-GTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-I--TQIL 326 (394)
T ss_dssp EEEECTTTTTTCSSCCEEECCTTCCE-E-CTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-C--CEEC
T ss_pred ceEcccceeeecccccEEecccccce-e-cCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-c--cEeh
Confidence 34445567788888888888765443 2 445667778888888764 343222346777888888888654 3 2333
Q ss_pred ccccCCCCCccEEeccCCCCCCchhhhHHHhhccccCcEeeCcCC
Q 038633 131 LGWLSGLPSLKYLNLGGADLSKDAAYWLESISMLRSLVELRLPNC 175 (176)
Q Consensus 131 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~~~~L~~L~l~~n 175 (176)
..+|.+|.+|+.+.+..+ +...... ++..+++|+.+++.++
T Consensus 327 ~~aF~~C~~L~~i~ip~s-v~~I~~~---aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 327 DDAFAGCEQLERIAIPSS-VTKIPES---AFSNCTALNNIEYSGS 367 (394)
T ss_dssp TTTTTTCTTCCEEEECTT-CCBCCGG---GGTTCTTCCEEEESSC
T ss_pred HhHhhCCCCCCEEEECcc-cCEEhHh---HhhCCCCCCEEEECCc
Confidence 456888888888888654 4434343 6778888888887764
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.24 E-value=0.00055 Score=43.56 Aligned_cols=55 Identities=22% Similarity=0.292 Sum_probs=29.6
Q ss_pred EeecCCCCcc-ccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEeecccC
Q 038633 43 YEDDAGHELG-GPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLSGSFF 100 (176)
Q Consensus 43 ~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~~~~~ 100 (176)
.++-+++.++ ..+|..+ .+++++|+|++|.++.. .+..+..+++|+.|++.+|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTAL-PPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSC-CTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCcc-ChhhhhhccccCEEEecCCCe
Confidence 4555556553 2344322 23466666666666643 334455566666666666655
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.84 E-value=0.0022 Score=40.72 Aligned_cols=58 Identities=17% Similarity=-0.057 Sum_probs=44.4
Q ss_pred eeeccCcccc-CCCCcCcccCCcceEeecCCCCccccchhhhcCCCCCcEEEccCccccCC
Q 038633 19 ALSLLRCCSV-GSALAQPFRDSFDTYEDDAGHELGGPISPSLLQLKDLKYLDLSMNNFKGF 78 (176)
Q Consensus 19 ~l~l~~~~~~-~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~~~~~~~ 78 (176)
.++.++..+. ..+|. ....++++|+|++|.|+..-+..|..+++|++|+|++|.+...
T Consensus 12 ~v~Cs~~~L~~~~vP~--~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~Cd 70 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPT--AFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCD 70 (130)
T ss_dssp EEECCSSCCCTTTSCS--CCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCS
T ss_pred EEEeCCCCCccccCCC--CCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeecc
Confidence 5666666654 23333 2334689999999999887788899999999999999998864
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=69.68 E-value=5.7 Score=23.49 Aligned_cols=43 Identities=12% Similarity=0.036 Sum_probs=18.5
Q ss_pred cccchhhhcCCCCCcEEEccCccccCCcchhhhcCcCCccEEEee
Q 038633 52 GGPISPSLLQLKDLKYLDLSMNNFKGFKVPEFIGSLKELRYLNLS 96 (176)
Q Consensus 52 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~p~~~~~l~~L~~L~l~ 96 (176)
+......|.++..|+.+.+..+ ++.+ ...+|..+.+|+.+.+.
T Consensus 9 t~I~~~aF~~c~~L~~i~iP~~-v~~I-g~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 9 VGMDKSLFAGNTVIREITVQPN-IGLL-YDGMFSGCTALEKLILT 51 (100)
T ss_dssp CSSCSCTTTTCTTCCCEEECTT-SSCC-CTTSSTTCTTCCCEEEC
T ss_pred CEecHHHhcCCCCCcEEEcCCc-hheE-cHHHHhccCCccEEEEc
Confidence 3333444555555555544443 1211 23344444444444443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=66.96 E-value=12 Score=22.00 Aligned_cols=46 Identities=13% Similarity=0.055 Sum_probs=27.0
Q ss_pred cccCCcchhhhcCcCCccEEEeecccCCCCcchhccCCCCCCEEEccC
Q 038633 74 NFKGFKVPEFIGSLKELRYLNLSGSFFSGTIPQSLGNLTNLLYLDLNN 121 (176)
Q Consensus 74 ~~~~~~~p~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~ 121 (176)
.++.+ ....|..+.+|+.+.+-.+--. .-...|..+.+|+.+.+..
T Consensus 7 ~vt~I-~~~aF~~c~~L~~i~iP~~v~~-Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 7 PVVGM-DKSLFAGNTVIREITVQPNIGL-LYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCSS-CSCTTTTCTTCCCEEECTTSSC-CCTTSSTTCTTCCCEEECC
T ss_pred ccCEe-cHHHhcCCCCCcEEEcCCchhe-EcHHHHhccCCccEEEEcC
Confidence 34433 4445666777777776654322 3345566777777777755
Done!