Query 038634
Match_columns 222
No_of_seqs 138 out of 1212
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 13:03:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038634.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038634hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0406 Glutathione S-transfer 100.0 1.7E-41 3.8E-46 253.9 23.9 216 3-218 8-227 (231)
2 PRK09481 sspA stringent starva 100.0 2.7E-40 5.8E-45 252.8 22.4 197 3-205 9-205 (211)
3 PLN02473 glutathione S-transfe 100.0 8E-37 1.7E-41 234.2 19.1 194 1-201 1-210 (214)
4 TIGR00862 O-ClC intracellular 100.0 8.6E-36 1.9E-40 228.7 21.8 197 10-217 16-235 (236)
5 PRK15113 glutathione S-transfe 100.0 6.3E-36 1.4E-40 229.1 19.4 192 1-203 1-209 (214)
6 PLN02395 glutathione S-transfe 100.0 1.3E-35 2.7E-40 227.7 19.2 194 1-202 1-210 (215)
7 PRK10542 glutathionine S-trans 100.0 9.2E-36 2E-40 226.2 16.9 189 5-202 1-197 (201)
8 PRK13972 GSH-dependent disulfi 100.0 3.9E-35 8.5E-40 224.9 17.5 187 5-202 2-205 (215)
9 TIGR01262 maiA maleylacetoacet 100.0 8.7E-35 1.9E-39 222.3 18.8 190 6-203 1-205 (210)
10 COG0625 Gst Glutathione S-tran 100.0 1.2E-34 2.6E-39 221.6 19.6 185 5-197 1-199 (211)
11 PRK10357 putative glutathione 100.0 4.6E-34 9.9E-39 217.1 20.6 192 5-202 1-200 (202)
12 KOG0868 Glutathione S-transfer 100.0 9.4E-35 2E-39 205.2 14.2 193 3-203 4-208 (217)
13 PTZ00057 glutathione s-transfe 100.0 1.4E-33 3.1E-38 214.7 17.9 192 1-205 1-202 (205)
14 PRK11752 putative S-transferas 100.0 2.7E-33 5.8E-38 220.4 19.8 197 3-204 43-260 (264)
15 PLN02378 glutathione S-transfe 100.0 8E-33 1.7E-37 211.6 20.3 187 10-209 17-206 (213)
16 PLN02817 glutathione dehydroge 100.0 2E-32 4.3E-37 214.4 20.9 191 10-213 70-262 (265)
17 KOG0867 Glutathione S-transfer 100.0 1.3E-31 2.8E-36 205.9 18.1 197 4-205 2-212 (226)
18 PRK10387 glutaredoxin 2; Provi 100.0 2.7E-31 5.8E-36 203.0 16.7 178 5-196 1-207 (210)
19 KOG1695 Glutathione S-transfer 100.0 6.8E-29 1.5E-33 185.1 16.6 195 1-205 1-203 (206)
20 TIGR02182 GRXB Glutaredoxin, G 100.0 6.9E-29 1.5E-33 189.3 16.5 176 6-196 1-206 (209)
21 KOG4420 Uncharacterized conser 99.9 1.4E-26 3.1E-31 173.0 13.2 202 4-208 26-293 (325)
22 KOG1422 Intracellular Cl- chan 99.9 3.7E-25 8.1E-30 160.9 16.9 196 10-215 18-218 (221)
23 PLN02907 glutamate-tRNA ligase 99.9 1.2E-23 2.7E-28 183.5 17.2 158 1-195 1-159 (722)
24 PF13417 GST_N_3: Glutathione 99.8 8.2E-21 1.8E-25 121.2 8.4 74 7-81 1-74 (75)
25 cd03059 GST_N_SspA GST_N famil 99.8 7.4E-20 1.6E-24 116.2 9.1 73 5-78 1-73 (73)
26 cd03061 GST_N_CLIC GST_N famil 99.8 5.4E-20 1.2E-24 119.9 8.5 70 11-81 20-89 (91)
27 cd03058 GST_N_Tau GST_N family 99.8 1.6E-19 3.4E-24 115.0 8.9 74 5-78 1-74 (74)
28 cd03052 GST_N_GDAP1 GST_N fami 99.8 1E-19 2.2E-24 115.2 7.9 70 5-75 1-73 (73)
29 cd03041 GST_N_2GST_N GST_N fam 99.8 4.3E-19 9.4E-24 113.8 8.1 73 5-78 2-77 (77)
30 cd03076 GST_N_Pi GST_N family, 99.8 3.5E-19 7.5E-24 113.0 7.2 72 4-76 1-72 (73)
31 cd03060 GST_N_Omega_like GST_N 99.8 6.9E-19 1.5E-23 111.1 8.4 68 6-74 2-70 (71)
32 cd03045 GST_N_Delta_Epsilon GS 99.8 7.1E-19 1.5E-23 112.0 8.2 71 5-76 1-74 (74)
33 KOG4244 Failed axon connection 99.8 5.4E-18 1.2E-22 127.9 13.6 177 5-193 46-273 (281)
34 cd03053 GST_N_Phi GST_N family 99.8 1.2E-18 2.7E-23 111.5 8.8 72 5-77 2-76 (76)
35 cd03185 GST_C_Tau GST_C family 99.8 8.3E-18 1.8E-22 118.1 13.0 123 89-211 2-124 (126)
36 cd03050 GST_N_Theta GST_N fami 99.8 2.4E-18 5.3E-23 110.1 9.0 73 5-78 1-76 (76)
37 KOG3029 Glutathione S-transfer 99.8 2.5E-17 5.3E-22 125.1 14.1 182 4-193 90-355 (370)
38 cd03048 GST_N_Ure2p_like GST_N 99.8 4.4E-18 9.6E-23 110.2 8.8 73 5-79 2-80 (81)
39 cd03039 GST_N_Sigma_like GST_N 99.8 2.3E-18 5E-23 109.0 7.1 71 5-76 1-72 (72)
40 cd03055 GST_N_Omega GST_N fami 99.8 4.5E-18 9.8E-23 112.1 8.7 72 3-75 17-89 (89)
41 cd03044 GST_N_EF1Bgamma GST_N 99.8 4.4E-18 9.5E-23 108.5 8.0 70 6-76 2-74 (75)
42 cd03056 GST_N_4 GST_N family, 99.8 4.6E-18 1E-22 107.9 8.1 70 5-75 1-73 (73)
43 COG0435 ECM4 Predicted glutath 99.8 6.8E-18 1.5E-22 127.9 9.8 205 3-209 50-293 (324)
44 cd03037 GST_N_GRX2 GST_N famil 99.7 5.8E-18 1.2E-22 106.9 7.7 70 5-76 1-71 (71)
45 cd03049 GST_N_3 GST_N family, 99.7 5.6E-18 1.2E-22 107.5 7.6 70 5-75 1-73 (73)
46 COG2999 GrxB Glutaredoxin 2 [P 99.7 2.8E-17 6.2E-22 116.7 11.6 178 5-196 1-207 (215)
47 cd03047 GST_N_2 GST_N family, 99.7 7.6E-18 1.6E-22 106.9 7.9 70 5-75 1-73 (73)
48 cd03046 GST_N_GTT1_like GST_N 99.7 1.1E-17 2.4E-22 107.0 8.5 73 5-79 1-76 (76)
49 cd03051 GST_N_GTT2_like GST_N 99.7 9.4E-18 2E-22 106.7 7.4 70 5-75 1-74 (74)
50 cd03057 GST_N_Beta GST_N famil 99.7 1.5E-17 3.3E-22 106.7 8.4 73 5-79 1-77 (77)
51 cd03042 GST_N_Zeta GST_N famil 99.7 1.5E-17 3.2E-22 105.5 7.8 70 5-75 1-73 (73)
52 cd03040 GST_N_mPGES2 GST_N fam 99.7 2.1E-17 4.6E-22 105.9 7.9 72 4-78 1-76 (77)
53 PF13409 GST_N_2: Glutathione 99.7 2.6E-17 5.6E-22 103.4 7.2 65 12-77 1-70 (70)
54 cd03077 GST_N_Alpha GST_N fami 99.7 5.8E-17 1.3E-21 104.3 8.9 72 4-79 1-77 (79)
55 cd03080 GST_N_Metaxin_like GST 99.7 7.4E-17 1.6E-21 102.8 8.5 67 5-79 2-75 (75)
56 cd03075 GST_N_Mu GST_N family, 99.7 5.6E-17 1.2E-21 105.0 8.1 72 6-78 2-82 (82)
57 cd03190 GST_C_ECM4_like GST_C 99.7 1.7E-16 3.7E-21 113.7 11.4 125 89-215 3-131 (142)
58 cd03184 GST_C_Omega GST_C fami 99.7 2.3E-16 5.1E-21 110.5 11.1 119 90-211 2-122 (124)
59 cd03186 GST_C_SspA GST_N famil 99.7 2.8E-16 6.1E-21 107.2 11.2 105 89-199 2-106 (107)
60 cd03196 GST_C_5 GST_C family, 99.7 4.7E-16 1E-20 107.4 11.2 110 86-199 2-114 (115)
61 KOG2903 Predicted glutathione 99.7 1.2E-16 2.7E-21 120.0 8.4 196 3-201 36-287 (319)
62 cd03198 GST_C_CLIC GST_C famil 99.7 5.9E-16 1.3E-20 108.5 11.1 108 102-211 8-133 (134)
63 cd03038 GST_N_etherase_LigE GS 99.7 2.3E-16 5E-21 102.8 7.7 67 11-79 14-84 (84)
64 PF02798 GST_N: Glutathione S- 99.7 4.2E-16 9.1E-21 99.5 8.1 72 5-76 1-76 (76)
65 cd03043 GST_N_1 GST_N family, 99.7 4.9E-16 1.1E-20 98.4 7.7 66 9-75 6-73 (73)
66 cd00570 GST_N_family Glutathio 99.6 9E-16 1.9E-20 96.1 7.9 70 5-75 1-71 (71)
67 cd03188 GST_C_Beta GST_C famil 99.6 2.6E-15 5.7E-20 103.4 9.6 104 90-200 2-114 (114)
68 cd03054 GST_N_Metaxin GST_N fa 99.6 3.5E-15 7.7E-20 94.3 8.1 65 5-77 1-72 (72)
69 cd03201 GST_C_DHAR GST_C famil 99.6 1.3E-14 2.9E-19 100.9 11.3 105 104-211 13-119 (121)
70 cd03203 GST_C_Lambda GST_C fam 99.6 7.8E-15 1.7E-19 102.1 9.9 115 87-210 1-119 (120)
71 cd03209 GST_C_Mu GST_C family, 99.6 1.3E-14 2.7E-19 101.2 10.3 109 90-205 2-112 (121)
72 cd03191 GST_C_Zeta GST_C famil 99.6 8.9E-15 1.9E-19 102.0 9.3 108 89-203 2-120 (121)
73 cd03189 GST_C_GTT1_like GST_C 99.6 2.8E-14 6E-19 99.1 11.4 103 85-194 2-119 (119)
74 cd03182 GST_C_GTT2_like GST_C 99.6 3.9E-14 8.4E-19 98.1 11.9 104 87-196 1-117 (117)
75 cd03177 GST_C_Delta_Epsilon GS 99.6 1.8E-14 3.8E-19 100.0 9.9 105 90-200 2-110 (118)
76 cd03187 GST_C_Phi GST_C family 99.6 3.2E-14 7E-19 98.6 9.7 106 90-200 2-118 (118)
77 cd03210 GST_C_Pi GST_C family, 99.6 3.9E-14 8.4E-19 99.5 9.7 109 90-205 3-115 (126)
78 cd03200 GST_C_JTV1 GST_C famil 99.5 5.4E-14 1.2E-18 93.8 9.2 95 71-192 1-95 (96)
79 cd03180 GST_C_2 GST_C family, 99.5 1.2E-13 2.6E-18 94.4 10.9 100 90-196 2-110 (110)
80 cd03208 GST_C_Alpha GST_C fami 99.5 7.5E-14 1.6E-18 99.3 10.1 108 90-204 3-117 (137)
81 cd03178 GST_C_Ure2p_like GST_C 99.5 2.9E-14 6.2E-19 98.1 7.4 104 91-200 2-112 (113)
82 cd03181 GST_C_EFB1gamma GST_C 99.5 7.8E-14 1.7E-18 97.4 9.1 110 91-204 2-118 (123)
83 cd03207 GST_C_8 GST_C family, 99.5 4.4E-14 9.5E-19 95.6 6.3 98 97-202 4-102 (103)
84 cd03183 GST_C_Theta GST_C fami 99.5 2.8E-13 6E-18 95.1 9.0 104 91-200 2-120 (126)
85 cd03195 GST_C_4 GST_C family, 99.5 6.2E-13 1.3E-17 91.6 9.2 102 89-200 2-111 (114)
86 cd03206 GST_C_7 GST_C family, 99.5 3.9E-13 8.5E-18 90.5 8.0 71 119-196 30-100 (100)
87 PF00043 GST_C: Glutathione S- 99.4 9.3E-13 2E-17 87.7 8.9 71 119-194 25-95 (95)
88 PF13410 GST_C_2: Glutathione 99.4 8.9E-13 1.9E-17 82.5 7.4 67 119-189 3-69 (69)
89 KOG3028 Translocase of outer m 99.4 3.5E-11 7.5E-16 93.6 16.6 172 12-193 16-234 (313)
90 KOG3027 Mitochondrial outer me 99.4 2.2E-11 4.9E-16 88.9 14.2 171 12-193 33-248 (257)
91 cd03079 GST_N_Metaxin2 GST_N f 99.4 2.3E-12 5E-17 80.7 7.0 60 11-77 15-74 (74)
92 cd03204 GST_C_GDAP1 GST_C fami 99.4 3.7E-12 7.9E-17 86.6 8.2 76 117-196 24-111 (111)
93 cd03179 GST_C_1 GST_C family, 99.3 4.7E-12 1E-16 85.8 7.5 95 90-191 2-105 (105)
94 PF14497 GST_C_3: Glutathione 99.3 3.9E-12 8.4E-17 85.4 6.3 94 89-192 4-99 (99)
95 TIGR02190 GlrX-dom Glutaredoxi 99.3 8.6E-12 1.9E-16 80.1 7.6 72 3-75 8-79 (79)
96 cd00299 GST_C_family Glutathio 99.3 1.1E-11 2.4E-16 82.8 7.3 92 95-190 2-100 (100)
97 cd03192 GST_C_Sigma_like GST_C 99.3 2.4E-11 5.1E-16 82.3 8.5 95 90-190 2-104 (104)
98 PRK10638 glutaredoxin 3; Provi 99.3 2.5E-11 5.3E-16 78.8 7.9 73 1-75 1-74 (83)
99 cd03202 GST_C_etherase_LigE GS 99.3 3.1E-11 6.6E-16 84.4 7.9 68 120-192 56-123 (124)
100 cd03194 GST_C_3 GST_C family, 99.3 7.3E-11 1.6E-15 81.3 9.6 72 120-201 39-113 (114)
101 cd03193 GST_C_Metaxin GST_C fa 99.2 4.1E-11 8.9E-16 78.6 6.7 69 122-191 19-88 (88)
102 cd03029 GRX_hybridPRX5 Glutare 99.2 1.7E-10 3.6E-15 72.7 8.2 71 4-75 2-72 (72)
103 cd03078 GST_N_Metaxin1_like GS 99.1 5.6E-10 1.2E-14 70.3 8.1 58 12-77 15-72 (73)
104 cd03211 GST_C_Metaxin2 GST_C f 99.0 6.2E-10 1.3E-14 77.9 6.1 72 119-191 54-126 (126)
105 cd03027 GRX_DEP Glutaredoxin ( 99.0 4.2E-09 9E-14 66.5 7.3 68 4-72 2-70 (73)
106 cd03205 GST_C_6 GST_C family, 98.9 8.3E-09 1.8E-13 69.0 8.3 65 119-190 34-98 (98)
107 cd03212 GST_C_Metaxin1_3 GST_C 98.9 5E-09 1.1E-13 74.4 7.5 73 119-192 61-134 (137)
108 cd03197 GST_C_mPGES2 GST_C fam 98.9 1E-08 2.2E-13 72.8 8.8 64 123-192 80-145 (149)
109 PRK10329 glutaredoxin-like pro 98.9 5.9E-09 1.3E-13 67.0 6.6 62 4-66 2-63 (81)
110 cd02066 GRX_family Glutaredoxi 98.9 1.4E-08 2.9E-13 63.5 7.3 69 4-73 1-70 (72)
111 TIGR02196 GlrX_YruB Glutaredox 98.8 2.2E-08 4.8E-13 62.9 7.0 70 4-74 1-73 (74)
112 cd03418 GRX_GRXb_1_3_like Glut 98.8 3.6E-08 7.9E-13 62.4 7.4 70 4-74 1-72 (75)
113 cd02976 NrdH NrdH-redoxin (Nrd 98.8 2.3E-08 5E-13 62.7 6.3 63 4-67 1-64 (73)
114 COG0695 GrxC Glutaredoxin and 98.7 1.1E-07 2.4E-12 60.9 7.6 69 4-73 2-73 (80)
115 PF14834 GST_C_4: Glutathione 98.7 2.7E-07 5.9E-12 61.8 9.5 104 87-200 1-112 (117)
116 TIGR02181 GRX_bact Glutaredoxi 98.6 1.5E-07 3.2E-12 60.2 7.0 71 5-76 1-72 (79)
117 TIGR02194 GlrX_NrdH Glutaredox 98.6 1.1E-07 2.3E-12 59.8 6.1 57 5-62 1-57 (72)
118 PRK11200 grxA glutaredoxin 1; 98.6 2.6E-07 5.6E-12 60.0 7.9 76 4-79 2-84 (85)
119 TIGR02189 GlrX-like_plant Glut 98.6 4.9E-07 1.1E-11 60.4 8.8 70 3-73 8-81 (99)
120 PF00462 Glutaredoxin: Glutare 98.6 9.2E-08 2E-12 57.8 4.1 59 5-64 1-60 (60)
121 TIGR02200 GlrX_actino Glutared 98.6 2E-07 4.4E-12 59.1 5.9 64 4-68 1-67 (77)
122 cd03419 GRX_GRXh_1_2_like Glut 98.5 7.3E-07 1.6E-11 57.3 8.2 72 4-76 1-76 (82)
123 PHA03050 glutaredoxin; Provisi 98.5 9.4E-07 2E-11 59.9 8.5 69 3-72 13-88 (108)
124 TIGR02183 GRXA Glutaredoxin, G 98.5 8.7E-07 1.9E-11 57.7 7.6 75 5-79 2-83 (86)
125 TIGR00365 monothiol glutaredox 98.3 3.3E-06 7.1E-11 56.2 7.6 71 3-74 12-88 (97)
126 TIGR02180 GRX_euk Glutaredoxin 98.3 7.1E-06 1.5E-10 52.8 8.2 71 5-76 1-77 (84)
127 cd03028 GRX_PICOT_like Glutare 98.3 6.6E-06 1.4E-10 54.0 7.6 71 3-74 8-84 (90)
128 PF10568 Tom37: Outer mitochon 98.1 2.8E-05 6.1E-10 48.5 7.0 55 12-74 13-71 (72)
129 PRK12759 bifunctional gluaredo 98.0 3.3E-05 7.1E-10 64.8 8.2 70 1-72 1-79 (410)
130 KOG1752 Glutaredoxin and relat 97.9 0.00018 3.8E-09 48.2 8.7 71 3-74 14-88 (104)
131 PF04399 Glutaredoxin2_C: Glut 97.9 0.00017 3.8E-09 50.4 8.8 67 121-196 58-124 (132)
132 PRK10824 glutaredoxin-4; Provi 97.8 0.00011 2.4E-09 50.2 7.2 71 3-74 15-91 (115)
133 cd03031 GRX_GRX_like Glutaredo 97.7 0.00019 4.1E-09 51.3 7.6 70 4-73 1-80 (147)
134 KOG1147 Glutamyl-tRNA syntheta 97.7 2.9E-05 6.3E-10 65.2 2.8 112 60-194 44-156 (712)
135 COG4545 Glutaredoxin-related p 97.5 0.00032 7E-09 43.1 5.4 63 1-65 1-77 (85)
136 cd03199 GST_C_GRX2 GST_C famil 97.4 0.00086 1.9E-08 46.5 7.2 67 121-196 59-125 (128)
137 PTZ00062 glutaredoxin; Provisi 97.4 0.00078 1.7E-08 50.9 7.6 71 3-74 113-189 (204)
138 cd02973 TRX_GRX_like Thioredox 97.3 0.0013 2.9E-08 40.2 5.9 58 4-65 2-64 (67)
139 cd03036 ArsC_like Arsenate Red 96.9 0.0026 5.7E-08 43.3 5.0 33 5-37 1-33 (111)
140 cd02977 ArsC_family Arsenate R 96.8 0.0037 8E-08 42.1 5.2 32 5-36 1-32 (105)
141 PRK01655 spxA transcriptional 96.7 0.0045 9.8E-08 43.5 5.1 32 5-36 2-33 (131)
142 PF05768 DUF836: Glutaredoxin- 96.5 0.018 3.9E-07 36.8 6.8 55 4-61 1-57 (81)
143 cd03032 ArsC_Spx Arsenate Redu 96.5 0.0078 1.7E-07 41.3 5.3 32 5-36 2-33 (115)
144 TIGR00412 redox_disulf_2 small 96.4 0.019 4.1E-07 36.1 6.5 55 5-65 3-61 (76)
145 TIGR01617 arsC_related transcr 96.3 0.0068 1.5E-07 41.7 4.2 32 5-36 1-32 (117)
146 PRK12559 transcriptional regul 96.3 0.011 2.4E-07 41.5 5.3 33 5-37 2-34 (131)
147 PRK13344 spxA transcriptional 96.3 0.013 2.8E-07 41.2 5.6 33 5-37 2-34 (132)
148 PRK10026 arsenate reductase; P 96.1 0.017 3.8E-07 40.9 5.5 35 1-36 1-35 (141)
149 cd03035 ArsC_Yffb Arsenate Red 96.1 0.018 3.9E-07 38.8 5.1 32 5-36 1-32 (105)
150 cd03033 ArsC_15kD Arsenate Red 95.9 0.025 5.3E-07 38.7 5.3 32 5-36 2-33 (113)
151 cd03030 GRX_SH3BGR Glutaredoxi 95.8 0.088 1.9E-06 34.5 7.4 67 5-72 2-79 (92)
152 COG0278 Glutaredoxin-related p 95.4 0.095 2.1E-06 34.5 6.4 73 3-76 15-94 (105)
153 PF11287 DUF3088: Protein of u 95.4 0.058 1.3E-06 36.3 5.5 68 12-79 23-108 (112)
154 TIGR00411 redox_disulf_1 small 95.1 0.1 2.2E-06 32.9 5.9 57 4-62 2-62 (82)
155 COG1393 ArsC Arsenate reductas 95.0 0.078 1.7E-06 36.4 5.4 33 4-36 2-34 (117)
156 cd01659 TRX_superfamily Thiore 94.9 0.081 1.8E-06 30.7 4.7 54 5-59 1-59 (69)
157 cd03026 AhpF_NTD_C TRX-GRX-lik 94.7 0.13 2.7E-06 33.5 5.6 58 4-65 15-77 (89)
158 PF13192 Thioredoxin_3: Thiore 94.5 0.15 3.3E-06 31.9 5.4 57 5-67 3-63 (76)
159 TIGR01616 nitro_assoc nitrogen 94.4 0.13 2.9E-06 35.8 5.4 33 4-36 2-34 (126)
160 PHA02125 thioredoxin-like prot 94.3 0.23 5E-06 31.0 6.0 51 5-59 2-52 (75)
161 PRK10853 putative reductase; P 94.1 0.094 2E-06 36.1 4.1 32 5-36 2-33 (118)
162 PF11801 Tom37_C: Tom37 C-term 93.9 0.15 3.3E-06 37.4 5.1 38 126-163 112-153 (168)
163 cd03034 ArsC_ArsC Arsenate Red 93.9 0.11 2.4E-06 35.3 4.1 32 5-36 1-32 (112)
164 TIGR00014 arsC arsenate reduct 93.7 0.2 4.3E-06 34.2 5.1 32 5-36 1-32 (114)
165 PF04908 SH3BGR: SH3-binding, 92.7 0.76 1.6E-05 30.5 6.4 70 1-73 1-86 (99)
166 COG3019 Predicted metal-bindin 89.4 1.4 3.1E-05 30.9 5.4 75 4-78 27-104 (149)
167 PF00085 Thioredoxin: Thioredo 87.9 5.5 0.00012 25.7 8.1 70 4-76 20-102 (103)
168 PF03960 ArsC: ArsC family; I 85.1 1.4 3E-05 29.7 3.5 29 8-36 1-29 (110)
169 KOG0911 Glutaredoxin-related p 82.9 3.2 6.9E-05 31.8 4.9 72 4-76 140-217 (227)
170 TIGR01295 PedC_BrcD bacterioci 81.1 10 0.00022 26.1 6.6 32 5-36 27-62 (122)
171 cd02949 TRX_NTR TRX domain, no 79.6 13 0.00028 24.1 6.5 58 5-64 17-80 (97)
172 TIGR03143 AhpF_homolog putativ 78.6 6.8 0.00015 34.6 6.3 58 4-66 479-542 (555)
173 cd02953 DsbDgamma DsbD gamma f 78.4 7.9 0.00017 25.4 5.3 52 5-58 15-77 (104)
174 PF09635 MetRS-N: MetRS-N bind 78.1 1.5 3.3E-05 30.1 1.6 26 54-79 36-63 (122)
175 PHA03075 glutaredoxin-like pro 77.8 4 8.6E-05 27.8 3.5 69 1-78 1-70 (123)
176 cd02947 TRX_family TRX family; 77.2 14 0.00031 22.7 7.1 55 5-63 14-75 (93)
177 cd02989 Phd_like_TxnDC9 Phosdu 74.8 14 0.0003 24.9 5.8 59 5-67 26-91 (113)
178 PRK09381 trxA thioredoxin; Pro 74.4 22 0.00047 23.4 8.0 58 5-64 25-88 (109)
179 cd02984 TRX_PICOT TRX domain, 74.3 20 0.00043 22.9 6.7 58 5-64 18-81 (97)
180 cd02963 TRX_DnaJ TRX domain, D 73.3 20 0.00043 23.9 6.3 58 4-63 27-91 (111)
181 TIGR03140 AhpF alkyl hydropero 72.7 5.7 0.00012 34.7 4.3 72 4-77 120-198 (515)
182 PF11417 Inhibitor_G39P: Loade 72.6 15 0.00032 22.7 4.9 36 66-103 5-42 (71)
183 cd02975 PfPDO_like_N Pyrococcu 71.0 14 0.00029 25.0 5.0 52 5-58 25-80 (113)
184 PRK15317 alkyl hydroperoxide r 70.7 4.2 9E-05 35.5 3.0 72 4-77 119-197 (517)
185 TIGR02187 GlrX_arch Glutaredox 69.6 20 0.00043 27.3 6.2 55 4-60 136-193 (215)
186 KOG1668 Elongation factor 1 be 68.9 4 8.7E-05 31.3 2.1 59 128-197 10-68 (231)
187 cd02951 SoxW SoxW family; SoxW 68.7 21 0.00045 24.3 5.7 17 4-20 17-33 (125)
188 KOG3425 Uncharacterized conser 66.4 20 0.00043 24.7 4.8 67 10-76 42-121 (128)
189 cd02959 ERp19 Endoplasmic reti 65.2 36 0.00077 23.1 6.2 61 5-66 23-92 (117)
190 cd03003 PDI_a_ERdj5_N PDIa fam 64.7 31 0.00067 22.3 5.7 55 5-62 22-83 (101)
191 KOG2824 Glutaredoxin-related p 64.5 13 0.00028 29.5 4.1 70 4-73 132-211 (281)
192 PTZ00051 thioredoxin; Provisio 64.3 35 0.00075 21.8 6.0 58 5-64 22-84 (98)
193 PRK10996 thioredoxin 2; Provis 56.3 67 0.0014 22.5 8.8 58 5-64 56-119 (139)
194 PF09849 DUF2076: Uncharacteri 56.0 99 0.0021 24.3 8.1 67 66-138 5-71 (247)
195 PHA02278 thioredoxin-like prot 54.0 62 0.0013 21.4 7.1 59 5-65 18-86 (103)
196 TIGR01068 thioredoxin thioredo 53.8 54 0.0012 20.7 8.2 56 5-62 18-79 (101)
197 TIGR02187 GlrX_arch Glutaredox 53.8 52 0.0011 25.0 6.0 57 5-63 23-89 (215)
198 cd02993 PDI_a_APS_reductase PD 53.4 63 0.0014 21.3 5.8 54 4-58 24-83 (109)
199 cd02962 TMX2 TMX2 family; comp 53.1 83 0.0018 22.6 6.6 61 5-66 51-123 (152)
200 PF06110 DUF953: Eukaryotic pr 51.4 16 0.00036 25.1 2.6 58 10-68 35-106 (119)
201 cd02948 TRX_NDPK TRX domain, T 50.5 68 0.0015 20.9 7.9 57 5-64 21-84 (102)
202 cd02957 Phd_like Phosducin (Ph 50.5 52 0.0011 21.9 5.0 59 5-68 28-93 (113)
203 TIGR02681 phage_pRha phage reg 49.6 21 0.00045 24.1 2.8 26 54-79 2-28 (108)
204 cd02956 ybbN ybbN protein fami 48.2 69 0.0015 20.3 6.5 57 5-63 16-78 (96)
205 cd03021 DsbA_GSTK DsbA family, 47.2 34 0.00073 25.8 4.0 35 3-37 1-39 (209)
206 cd02987 Phd_like_Phd Phosducin 46.2 1.2E+02 0.0025 22.3 6.9 61 5-68 87-152 (175)
207 PF01323 DSBA: DSBA-like thior 44.5 37 0.0008 24.9 3.8 35 4-38 1-40 (193)
208 KOG0190 Protein disulfide isom 44.4 1E+02 0.0023 26.9 6.8 73 5-79 46-133 (493)
209 cd03005 PDI_a_ERp46 PDIa famil 43.9 84 0.0018 20.0 5.9 56 5-62 20-84 (102)
210 PTZ00443 Thioredoxin domain-co 43.2 1.5E+02 0.0033 22.8 10.8 72 5-79 56-140 (224)
211 cd02997 PDI_a_PDIR PDIa family 42.7 89 0.0019 19.9 6.4 57 5-62 21-86 (104)
212 cd02994 PDI_a_TMX PDIa family, 42.6 90 0.0019 20.0 5.5 52 5-58 20-76 (101)
213 cd03004 PDI_a_ERdj5_C PDIa fam 42.4 67 0.0015 20.7 4.5 52 5-58 23-78 (104)
214 cd02996 PDI_a_ERp44 PDIa famil 41.8 85 0.0018 20.5 4.9 56 5-62 22-89 (108)
215 PRK09266 hypothetical protein; 41.0 50 0.0011 26.0 4.3 57 22-79 200-259 (266)
216 PF12290 DUF3802: Protein of u 40.7 44 0.00095 22.6 3.2 85 68-158 9-97 (113)
217 PTZ00102 disulphide isomerase; 40.3 1.9E+02 0.0042 24.7 8.1 73 5-79 53-139 (477)
218 PF04134 DUF393: Protein of un 39.3 1.1E+02 0.0025 20.2 5.4 68 7-76 1-76 (114)
219 cd02955 SSP411 TRX domain, SSP 38.4 1.3E+02 0.0029 20.7 6.4 61 5-67 19-97 (124)
220 cd02954 DIM1 Dim1 family; Dim1 37.9 1.3E+02 0.0028 20.5 5.6 58 5-64 18-81 (114)
221 PF13098 Thioredoxin_2: Thiore 37.7 41 0.00089 22.1 2.9 21 4-24 8-28 (112)
222 cd02999 PDI_a_ERp44_like PDIa 37.6 1.2E+02 0.0025 19.8 5.6 54 5-61 22-82 (100)
223 PF13728 TraF: F plasmid trans 37.2 1.3E+02 0.0028 23.0 5.8 53 4-58 123-188 (215)
224 cd02985 TRX_CDSP32 TRX family, 37.1 1.2E+02 0.0026 19.8 6.5 59 5-64 19-84 (103)
225 cd03006 PDI_a_EFP1_N PDIa fami 37.0 67 0.0015 21.7 3.8 51 5-58 33-89 (113)
226 PF04564 U-box: U-box domain; 36.8 1E+02 0.0022 18.9 4.8 25 53-78 15-39 (73)
227 TIGR01764 excise DNA binding d 35.6 67 0.0015 17.2 3.2 24 52-75 25-48 (49)
228 cd02950 TxlA TRX-like protein 35.4 1.6E+02 0.0034 20.7 6.6 59 5-64 24-90 (142)
229 PF11823 DUF3343: Protein of u 34.7 1.1E+02 0.0024 18.7 4.2 32 5-36 3-34 (73)
230 cd02965 HyaE HyaE family; HyaE 33.8 92 0.002 21.1 4.0 60 5-66 31-98 (111)
231 PF12062 HSNSD: heparan sulfat 33.7 98 0.0021 26.8 4.9 51 5-68 63-118 (487)
232 cd04911 ACT_AKiii-YclM-BS_1 AC 33.4 65 0.0014 20.2 3.0 26 12-37 14-39 (76)
233 PF09413 DUF2007: Domain of un 33.2 60 0.0013 19.3 2.8 31 6-36 2-32 (67)
234 PF14595 Thioredoxin_9: Thiore 32.9 26 0.00056 24.4 1.3 53 4-58 44-102 (129)
235 cd03020 DsbA_DsbC_DsbG DsbA fa 31.9 62 0.0013 24.1 3.3 22 4-25 80-101 (197)
236 PF15608 PELOTA_1: PELOTA RNA 31.4 93 0.002 20.7 3.6 31 4-34 57-87 (100)
237 PF12728 HTH_17: Helix-turn-he 31.4 98 0.0021 17.1 3.4 26 52-77 25-50 (51)
238 TIGR01130 ER_PDI_fam protein d 31.2 2.8E+02 0.0061 23.4 7.6 73 5-79 22-110 (462)
239 PRK10877 protein disulfide iso 30.8 97 0.0021 24.0 4.3 22 4-25 110-131 (232)
240 COG2761 FrnE Predicted dithiol 30.7 86 0.0019 24.3 3.8 24 4-27 7-34 (225)
241 cd02952 TRP14_like Human TRX-r 29.9 1.9E+02 0.004 19.8 6.4 55 11-66 38-105 (119)
242 PRK13947 shikimate kinase; Pro 28.2 85 0.0018 22.5 3.4 32 1-33 1-32 (171)
243 PRK15371 effector protein YopJ 28.1 2.2E+02 0.0048 23.0 5.8 42 122-164 23-64 (287)
244 cd02961 PDI_a_family Protein D 28.1 1.5E+02 0.0033 18.3 5.6 53 4-58 18-76 (101)
245 PRK11657 dsbG disulfide isomer 28.1 90 0.002 24.5 3.7 21 4-24 120-140 (251)
246 cd02998 PDI_a_ERp38 PDIa famil 27.6 1.7E+02 0.0036 18.5 4.8 54 4-58 21-80 (105)
247 cd02972 DsbA_family DsbA famil 27.4 86 0.0019 19.3 3.1 22 5-26 1-22 (98)
248 cd03000 PDI_a_TMX3 PDIa family 26.8 1.8E+02 0.0039 18.7 5.6 51 5-58 19-77 (104)
249 PLN02309 5'-adenylylsulfate re 26.2 2.1E+02 0.0046 24.8 5.9 53 4-58 368-427 (457)
250 PF03711 OKR_DC_1_C: Orn/Lys/A 25.5 29 0.00063 24.5 0.5 37 40-78 77-113 (136)
251 PF09314 DUF1972: Domain of un 25.5 65 0.0014 24.1 2.4 20 60-79 154-173 (185)
252 PF12972 NAGLU_C: Alpha-N-acet 25.2 2E+02 0.0044 22.8 5.2 48 116-163 121-179 (267)
253 PF09440 eIF3_N: eIF3 subunit 24.9 2.5E+02 0.0055 19.7 5.8 30 67-96 3-40 (133)
254 cd02988 Phd_like_VIAF Phosduci 24.6 2.4E+02 0.0052 21.1 5.3 58 5-67 106-168 (192)
255 PRK13949 shikimate kinase; Pro 24.4 1.1E+02 0.0024 22.2 3.5 31 1-32 1-31 (169)
256 cd03022 DsbA_HCCA_Iso DsbA fam 24.2 1.3E+02 0.0028 21.9 3.8 32 5-36 1-36 (192)
257 cd03025 DsbA_FrnE_like DsbA fa 22.7 1.5E+02 0.0033 21.6 3.9 31 4-34 2-38 (193)
258 PF03421 YopJ: YopJ Serine/Thr 22.4 2.8E+02 0.006 20.6 5.2 38 126-164 3-40 (177)
259 COG0429 Predicted hydrolase of 21.6 2.4E+02 0.0051 23.4 4.9 69 5-83 79-150 (345)
260 cd01557 BCAT_beta_family BCAT_ 21.5 92 0.002 24.8 2.7 56 22-78 211-273 (279)
261 PF11732 Thoc2: Transcription- 21.0 1.9E+02 0.0041 18.2 3.4 34 153-191 43-76 (77)
262 COG5515 Uncharacterized conser 20.9 1.2E+02 0.0026 18.1 2.3 21 5-25 3-27 (70)
263 cd00449 PLPDE_IV PyridoxaL 5'- 20.6 1.3E+02 0.0028 23.3 3.4 55 22-77 196-255 (256)
264 cd03001 PDI_a_P5 PDIa family, 20.2 2.4E+02 0.0052 17.8 5.5 51 5-58 22-77 (103)
No 1
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-41 Score=253.88 Aligned_cols=216 Identities=50% Similarity=0.825 Sum_probs=193.2
Q ss_pred cceEEEeecCChHHHHHHHHHHHcCCCceEEeCCCCCCchhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHhhcC-CC
Q 038634 3 EEVKLYGTWSSPFSRRIELALKLKGVPFEYIEEDLSNKSPELLKYNPVHKKIPVLVHNSKPIAESQVILEYIDEIWN-NN 81 (222)
Q Consensus 3 ~~~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~i~es~~I~~yL~~~~~-~~ 81 (222)
+.++||++..|||++|++++|+++||+|+.+..|+.++++++++.||.+++||||++||+.|+||..|++||++.++ ++
T Consensus 8 ~~vrL~~~w~sPfa~R~~iaL~~KgI~yE~veedl~~Ks~~ll~~np~hkKVPvL~Hn~k~i~ESliiveYiDe~w~~~~ 87 (231)
T KOG0406|consen 8 GTVKLLGMWFSPFAQRVRIALKLKGIPYEYVEEDLTNKSEWLLEKNPVHKKVPVLEHNGKPICESLIIVEYIDETWPSGP 87 (231)
T ss_pred CeEEEEEeecChHHHHHHHHHHhcCCceEEEecCCCCCCHHHHHhccccccCCEEEECCceehhhHHHHHHHHhhccCCC
Confidence 35999999999999999999999999999999999899999999997779999999999999999999999999999 58
Q ss_pred CCCCCCHHHHHHHHHHHHHhhhhhhhHhHHhhc-cchhhHHHHHHHHHHHHHHHHHhcC-CCCcccCCCCChhHHHHHHH
Q 038634 82 PILPQDPYQRAMARFWGKFIDEKALATRMKANF-AEGKERELVTEEFFQQMKFLENELN-GKDFFGGETIGFVDIVAIVV 159 (222)
Q Consensus 82 ~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~le~~L~-~~~~l~G~~~t~aD~~l~~~ 159 (222)
+++|+|+.+|+.++.|.++++..++........ ..++..+.+...+.+.|..||+.|. +++|++|+++++.|+++++.
T Consensus 88 ~iLP~DPy~Ra~arfwa~~id~~~~~~~~~~~~~~~~e~~~~~~~e~~e~l~~lE~el~k~k~~fgG~~~G~vDi~~~p~ 167 (231)
T KOG0406|consen 88 PILPSDPYERAQARFWAEYIDKKVFFVGRFVVAAKGGEEQEAAKEELREALKVLEEELGKGKDFFGGETIGFVDIAIGPS 167 (231)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcCHhhhhHHhh
Confidence 999999999999999999999877666555555 3557788889999999999999999 78999999999999999987
Q ss_pred HHHHHhhhhh-hccccCCcCccchHHHHHHHHHccccccccCCChhhhHHHHHHHHhhhh
Q 038634 160 AIWFPLTQEV-LGVETFTEEKFPVLFKWIRKITEIDVVNECRPPREKHLAYVKARIEGLK 218 (222)
Q Consensus 160 l~~~~~~~~~-~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 218 (222)
+.++...... .+...+..+++|+|.+|.+||.++++++++++..+.+.++++.+.+...
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~P~L~~W~~~~~~~~~V~~~~p~~e~~~e~~~~~~~~~~ 227 (231)
T KOG0406|consen 168 FERWLAVLEKFGGVKFIIEEETPKLIKWIKRMKEDEAVKAVLPDSEKVVEFMKKYRQGSP 227 (231)
T ss_pred HHHHHHHHHHhcCcccCCCCCCccHHHHHHHHhcChhHHhhcCCHHHHHHHHHHHHHhcc
Confidence 7666544333 4445555799999999999999999999999999999999999988754
No 2
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=100.00 E-value=2.7e-40 Score=252.75 Aligned_cols=197 Identities=21% Similarity=0.333 Sum_probs=167.5
Q ss_pred cceEEEeecCChHHHHHHHHHHHcCCCceEEeCCCCCCchhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHhhcCCCC
Q 038634 3 EEVKLYGTWSSPFSRRIELALKLKGVPFEYIEEDLSNKSPELLKYNPVHKKIPVLVHNSKPIAESQVILEYIDEIWNNNP 82 (222)
Q Consensus 3 ~~~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~i~es~~I~~yL~~~~~~~~ 82 (222)
+.|+||+++.||+|++++++|+++|++|+.+.++..+++++|+++||. |+||+|+++|.+|+||.||++||++++|+..
T Consensus 9 ~~~~Ly~~~~s~~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~nP~-g~VPvL~~~g~~l~ES~AIl~YL~~~~~~~~ 87 (211)
T PRK09481 9 SVMTLFSGPTDIYSHQVRIVLAEKGVSVEIEQVEKDNLPQDLIDLNPY-QSVPTLVDRELTLYESRIIMEYLDERFPHPP 87 (211)
T ss_pred CeeEEeCCCCChhHHHHHHHHHHCCCCCEEEeCCcccCCHHHHHhCCC-CCCCEEEECCEEeeCHHHHHHHHHHhCCCCC
Confidence 359999999999999999999999999999999988888999999999 8999999999999999999999999999888
Q ss_pred CCCCCHHHHHHHHHHHHHhhhhhhhHhHHhhccchhhHHHHHHHHHHHHHHHHHhcCCCCcccCCCCChhHHHHHHHHHH
Q 038634 83 ILPQDPYQRAMARFWGKFIDEKALATRMKANFAEGKERELVTEEFFQQMKFLENELNGKDFFGGETIGFVDIVAIVVAIW 162 (222)
Q Consensus 83 l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~ 162 (222)
|+|.++.+++++++|+.++...+...............+.....+.+.+..+|++|++++|++|+++|+||+++++.+.+
T Consensus 88 l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~G~~~t~AD~~l~~~~~~ 167 (211)
T PRK09481 88 LMPVYPVARGESRLMMHRIEKDWYSLMNKIVNGSASEADAARKQLREELLAIAPVFGEKPYFMSEEFSLVDCYLAPLLWR 167 (211)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHhccCCcccCCCccHHHHHHHHHHHH
Confidence 99999999999999998876655443332222233344566778889999999999989999999999999999998877
Q ss_pred HHhhhhhhccccCCcCccchHHHHHHHHHccccccccCCChhh
Q 038634 163 FPLTQEVLGVETFTEEKFPVLFKWIRKITEIDVVNECRPPREK 205 (222)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~ 205 (222)
+... +.++. ...+|+|.+|++++.+||++++++...+.
T Consensus 168 ~~~~----~~~~~-~~~~p~l~~w~~~~~~rp~~~~~~~~~~~ 205 (211)
T PRK09481 168 LPVL----GIELS-GPGAKELKGYMTRVFERDSFLASLTEAER 205 (211)
T ss_pred HHhc----CCCCC-CCCChhHHHHHHHHhccHHHHHHcCHHHH
Confidence 6422 44431 25799999999999999999999876544
No 3
>PLN02473 glutathione S-transferase
Probab=100.00 E-value=8e-37 Score=234.21 Aligned_cols=194 Identities=21% Similarity=0.333 Sum_probs=158.5
Q ss_pred CCcceEEEeecCChHHHHHHHHHHHcCCCceEEeCCCC---CCchhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHhh
Q 038634 1 MAEEVKLYGTWSSPFSRRIELALKLKGVPFEYIEEDLS---NKSPELLKYNPVHKKIPVLVHNSKPIAESQVILEYIDEI 77 (222)
Q Consensus 1 M~~~~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~g~~i~es~~I~~yL~~~ 77 (222)
|. |+||+++.||+++|++++|+++|++|+.+.++.. ..+++++.+||. |+||+|+++|.+|+||.+|++||+++
T Consensus 1 ~~--~kLy~~~~s~~~~rv~~~L~e~gi~ye~~~v~~~~~~~~~~~~~~~nP~-g~vP~L~~~g~~l~ES~aI~~YL~~~ 77 (214)
T PLN02473 1 MV--VKVYGQIKAANPQRVLLCFLEKGIEFEVIHVDLDKLEQKKPEHLLRQPF-GQVPAIEDGDLKLFESRAIARYYATK 77 (214)
T ss_pred Cc--eEEecCCCCCchHHHHHHHHHcCCCceEEEecCcccccCCHHHHhhCCC-CCCCeEEECCEEEEehHHHHHHHHHH
Confidence 55 8999999999999999999999999999988865 478899999999 89999999999999999999999999
Q ss_pred cCCC--CCCCCCHHHHHHHHHHHHHhhhhhhhHhH----Hhhc----c---chhhHHHHHHHHHHHHHHHHHhcCCCCcc
Q 038634 78 WNNN--PILPQDPYQRAMARFWGKFIDEKALATRM----KANF----A---EGKERELVTEEFFQQMKFLENELNGKDFF 144 (222)
Q Consensus 78 ~~~~--~l~p~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~----~---~~~~~~~~~~~~~~~l~~le~~L~~~~~l 144 (222)
+++. .|+|.++.+++++++|+.++.+.+.+.+. ..++ . .....+....++.+.++.||++|++++|+
T Consensus 78 ~~~~~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l 157 (214)
T PLN02473 78 YADQGTDLLGKTLEHRAIVDQWVEVENNYFYAVALPLVINLVFKPRLGEPCDVALVEELKVKFDKVLDVYENRLATNRYL 157 (214)
T ss_pred cCCcCCCCCCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 9743 59999999999999999888765543221 1111 1 11223445677888999999999988999
Q ss_pred cCCCCChhHHHHHHHHHHHHhhhhhhccccCCcCccchHHHHHHHHHccccccccCC
Q 038634 145 GGETIGFVDIVAIVVAIWFPLTQEVLGVETFTEEKFPVLFKWIRKITEIDVVNECRP 201 (222)
Q Consensus 145 ~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~ 201 (222)
+|+++|+||+++++.+.++...... ... .+++|+|.+|++++.++|++++++.
T Consensus 158 ~Gd~~t~ADi~~~~~~~~~~~~~~~--~~~--~~~~P~l~~w~~~~~~~p~~~~~~~ 210 (214)
T PLN02473 158 GGDEFTLADLTHMPGMRYIMNETSL--SGL--VTSRENLNRWWNEISARPAWKKLME 210 (214)
T ss_pred cCCCCCHHHHHHHHHHHHHHhcccc--HHH--HhcCHHHHHHHHHHhcChhhHHHHH
Confidence 9999999999999988776321111 112 3679999999999999999998754
No 4
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=100.00 E-value=8.6e-36 Score=228.67 Aligned_cols=197 Identities=17% Similarity=0.258 Sum_probs=161.2
Q ss_pred ecCChHHHHHHHHHHHcCCCceEEeCCCCCCchhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHhhcCC---CCCCCC
Q 038634 10 TWSSPFSRRIELALKLKGVPFEYIEEDLSNKSPELLKYNPVHKKIPVLVHNSKPIAESQVILEYIDEIWNN---NPILPQ 86 (222)
Q Consensus 10 ~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~i~es~~I~~yL~~~~~~---~~l~p~ 86 (222)
.+.||+|++++++|.++|++|+.+.+++..++++|+++||. |+||||+++|.+|+||.+|++||+++++. +.+.|.
T Consensus 16 ~~~cp~~~rv~i~L~ekgi~~e~~~vd~~~~~~~fl~inP~-g~vPvL~~~g~~l~ES~aI~eYL~e~~~~~~~p~l~p~ 94 (236)
T TIGR00862 16 IGNCPFSQRLFMILWLKGVVFNVTTVDLKRKPEDLQNLAPG-THPPFLTYNTEVKTDVNKIEEFLEETLCPPRYPKLSPK 94 (236)
T ss_pred CCCCHhHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHCcC-CCCCEEEECCEEeecHHHHHHHHHHHcCCCCCCCCCCC
Confidence 46899999999999999999999999998888999999999 89999999999999999999999999964 446666
Q ss_pred CHHHHHHHHHHHHHhhhhhhhHhHHhhcc-chhhHHHHHHHHHHHHHHHHHhcC------------------CCCcccCC
Q 038634 87 DPYQRAMARFWGKFIDEKALATRMKANFA-EGKERELVTEEFFQQMKFLENELN------------------GKDFFGGE 147 (222)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~le~~L~------------------~~~~l~G~ 147 (222)
++..++... .++..+...+.+ .+...+.....+.+.++.||++|. +++|+.|+
T Consensus 95 ~~~~~~~~~--------~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Le~~L~~~~~~~~~~~~~~~~~~~~~~f~~Gd 166 (236)
T TIGR00862 95 HPESNTAGL--------DIFAKFSAYIKNSNPEANDNLEKGLLKALKKLDDYLNSPLPEEIDEDSAEDEKVSRRKFLDGD 166 (236)
T ss_pred CHHHHHHHH--------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccCCCcccCC
Confidence 665544321 122222222222 223334455668899999999996 47999999
Q ss_pred CCChhHHHHHHHHHHHHhhh-hhhccccCCcCccchHHHHHHHHHccccccccCCChhhhHHHHHHHHhhh
Q 038634 148 TIGFVDIVAIVVAIWFPLTQ-EVLGVETFTEEKFPVLFKWIRKITEIDVVNECRPPREKHLAYVKARIEGL 217 (222)
Q Consensus 148 ~~t~aD~~l~~~l~~~~~~~-~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 217 (222)
++|+|||++++.++++.... ...++++ .+++|+|.+|++++.++|+|+++++...+++..+.++.+.+
T Consensus 167 ~~tlaD~~l~p~l~~l~~~~~~~~~~~i--~~~~p~l~~w~~~~~~~~sf~~t~p~~~~i~~~~~~~~~~~ 235 (236)
T TIGR00862 167 ELTLADCNLLPKLHIVKVVAKKYRNFDI--PAEFTGVWRYLSNAYAREEFTNTCPDDKEIELAYADVAKRL 235 (236)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHhCcCc--cccCchHHHHHHHHhccchHHhhCCChHHHHHHHHHHhhcC
Confidence 99999999999999997653 3347665 58999999999999999999999999999999999986554
No 5
>PRK15113 glutathione S-transferase; Provisional
Probab=100.00 E-value=6.3e-36 Score=229.09 Aligned_cols=192 Identities=23% Similarity=0.251 Sum_probs=157.6
Q ss_pred CC-cceEEEeec--CChHHHHHHHHHHHcCCCceEEeCCCCC---CchhhhhhCCCCCcccEEEeCCeeeeehHHHHHHH
Q 038634 1 MA-EEVKLYGTW--SSPFSRRIELALKLKGVPFEYIEEDLSN---KSPELLKYNPVHKKIPVLVHNSKPIAESQVILEYI 74 (222)
Q Consensus 1 M~-~~~~Ly~~~--~sp~~~~v~~~l~~~gi~~~~~~v~~~~---~~~~~~~~~p~~g~vP~L~~~g~~i~es~~I~~yL 74 (222)
|+ ++|+||+.+ .||+|++++++|+++||+|+.+.++... ..++|+++||. |+||+|+++|.+|+||.+|++||
T Consensus 1 ~~~~~~~Ly~~~~~~s~~~~rv~~~l~e~gi~~e~~~v~~~~~~~~~~~~~~~nP~-g~VP~L~~~~~~l~ES~aI~~YL 79 (214)
T PRK15113 1 MSKPAITLYSDAHFFSPYVMSAFVALQEKGLPFELKTVDLDAGEHLQPTYQGYSLT-RRVPTLQHDDFELSESSAIAEYL 79 (214)
T ss_pred CCCCeEEEEeCCCCCCchHHHHHHHHHHcCCCCeEEEeCCCCccccCHHHHhcCCC-CCCCEEEECCEEEecHHHHHHHH
Confidence 54 579999976 7999999999999999999999998753 56899999999 89999999999999999999999
Q ss_pred HhhcCCCC---CCCCCHHHHHHHHHHHHHhhhhhhhHhHH-----hhcc--chhhHHHHHHHHHHHHHHHHHhcCC-CCc
Q 038634 75 DEIWNNNP---ILPQDPYQRAMARFWGKFIDEKALATRMK-----ANFA--EGKERELVTEEFFQQMKFLENELNG-KDF 143 (222)
Q Consensus 75 ~~~~~~~~---l~p~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~--~~~~~~~~~~~~~~~l~~le~~L~~-~~~ 143 (222)
+++++++. ++|.++.+++++++|+.++++.+...... .+.. .....+...+.+.+.++.||++|++ ++|
T Consensus 80 ~~~~~~~~~~~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~ 159 (214)
T PRK15113 80 EERFAPPAWERIYPADLQARARARQIQAWLRSDLMPLREERPTDVVFAGAKKAPLSEAGKAAAEKLFAVAERLLAPGQPN 159 (214)
T ss_pred HHHcCCCCccccCCCCHHHHHHHHHHHHHHHhhhHHHhccCccchhccCCCCCcccHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 99998765 99999999999999999987656543211 1111 1223355667789999999999975 579
Q ss_pred ccCCCCChhHHHHHHHHHHHHhhhhhhccccCCcCccchHHHHHHHHHccccccccCCCh
Q 038634 144 FGGETIGFVDIVAIVVAIWFPLTQEVLGVETFTEEKFPVLFKWIRKITEIDVVNECRPPR 203 (222)
Q Consensus 144 l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~ 203 (222)
++|+ +|+||+++++.+.++.. . +.++ .|+|.+|++|+.+||+|++++.+.
T Consensus 160 l~G~-~TlADi~l~~~l~~~~~---~-~~~~-----~p~l~~~~~r~~~rp~~~~~~~~~ 209 (214)
T PRK15113 160 LFGE-WCIADTDLALMLNRLVL---H-GDEV-----PERLADYATFQWQRASVQRWLALS 209 (214)
T ss_pred eeCC-ccHHHHHHHHHHHHHHH---c-CCCC-----CHHHHHHHHHHhcCHHHHHHHHHh
Confidence 9996 99999999999877632 1 3332 299999999999999999887554
No 6
>PLN02395 glutathione S-transferase
Probab=100.00 E-value=1.3e-35 Score=227.73 Aligned_cols=194 Identities=21% Similarity=0.312 Sum_probs=157.0
Q ss_pred CCcceEEEeecCChHHHHHHHHHHHcCCCceEEeCCCC---CCchhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHhh
Q 038634 1 MAEEVKLYGTWSSPFSRRIELALKLKGVPFEYIEEDLS---NKSPELLKYNPVHKKIPVLVHNSKPIAESQVILEYIDEI 77 (222)
Q Consensus 1 M~~~~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~g~~i~es~~I~~yL~~~ 77 (222)
|+ ++||+.+.| +++|++++|+++|++|+.+.++.. ..+++|+++||. |+||+|+++|.+|+||.+|++||+++
T Consensus 1 ~~--~~ly~~~~~-~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~~nP~-g~vP~L~~~~~~l~ES~aI~~YL~~~ 76 (215)
T PLN02395 1 MV--LKVYGPAFA-SPKRALVTLIEKGVEFETVPVDLMKGEHKQPEYLALQPF-GVVPVIVDGDYKIFESRAIMRYYAEK 76 (215)
T ss_pred Ce--EEEEcCCcC-cHHHHHHHHHHcCCCceEEEeccccCCcCCHHHHhhCCC-CCCCEEEECCEEEEcHHHHHHHHHHH
Confidence 66 899997665 699999999999999999998864 467899999999 89999999999999999999999999
Q ss_pred cCC--CCCCCCCHHHHHHHHHHHHHhhhhhhhHhHHh----hc-------cchhhHHHHHHHHHHHHHHHHHhcCCCCcc
Q 038634 78 WNN--NPILPQDPYQRAMARFWGKFIDEKALATRMKA----NF-------AEGKERELVTEEFFQQMKFLENELNGKDFF 144 (222)
Q Consensus 78 ~~~--~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-------~~~~~~~~~~~~~~~~l~~le~~L~~~~~l 144 (222)
++. ..++|.++.+++++++|+.+.+..+.+.+... .+ ......+...+.+.+.++.||++|++++|+
T Consensus 77 ~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l 156 (215)
T PLN02395 77 YRSQGPDLLGKTIEERGQVEQWLDVEATSYHPPLLNLTLHILFASKMGFPADEKVIKESEEKLAKVLDVYEARLSKSKYL 156 (215)
T ss_pred cCCCCcCcCCCChhHHHHHHHHHHHHHHhcCchHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 975 35999999999999999998876555443221 11 112223455677889999999999988999
Q ss_pred cCCCCChhHHHHHHHHHHHHhhhhhhccccCCcCccchHHHHHHHHHccccccccCCC
Q 038634 145 GGETIGFVDIVAIVVAIWFPLTQEVLGVETFTEEKFPVLFKWIRKITEIDVVNECRPP 202 (222)
Q Consensus 145 ~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~ 202 (222)
+|+++|+||+++++++.++... ...... .+.+|+|.+|++++.++|++++++..
T Consensus 157 ~G~~~s~ADi~l~~~~~~~~~~--~~~~~~--~~~~p~L~~w~~~~~~rp~~k~~~~~ 210 (215)
T PLN02395 157 AGDFVSLADLAHLPFTEYLVGP--IGKAYL--IKDRKHVSAWWDDISSRPAWKEVLAK 210 (215)
T ss_pred cCCCcCHHHHHHHHHHHHHhcc--cchhhh--hccCchHHHHHHHHHcChHHHHHHHH
Confidence 9999999999999987766311 101111 36799999999999999999987654
No 7
>PRK10542 glutathionine S-transferase; Provisional
Probab=100.00 E-value=9.2e-36 Score=226.19 Aligned_cols=189 Identities=16% Similarity=0.312 Sum_probs=156.9
Q ss_pred eEEEeecCChHHHHHHHHHHHcCCCceEEeCCCCC----CchhhhhhCCCCCcccEEE-eCCeeeeehHHHHHHHHhhcC
Q 038634 5 VKLYGTWSSPFSRRIELALKLKGVPFEYIEEDLSN----KSPELLKYNPVHKKIPVLV-HNSKPIAESQVILEYIDEIWN 79 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~----~~~~~~~~~p~~g~vP~L~-~~g~~i~es~~I~~yL~~~~~ 79 (222)
|+||+.+.| ++++++++|+++||+|+.+.+++.. .+++|+++||. |+||||+ ++|.+|+||.+|++||+++++
T Consensus 1 m~l~~~~~s-~~~~~~~~L~~~gi~~e~~~v~~~~~~~~~~~~~~~~nP~-g~vPvL~~~~g~~l~eS~aI~~YL~~~~~ 78 (201)
T PRK10542 1 MKLFYKPGA-CSLASHITLRESGLDFTLVSVDLAKKRLENGDDYLAINPK-GQVPALLLDDGTLLTEGVAIMQYLADSVP 78 (201)
T ss_pred CceeecccH-HHHHHHHHHHHcCCCceEEEeecccccccCChHHHHhCcC-CCCCeEEeCCCcEeecHHHHHHHHHHhCc
Confidence 689998866 7999999999999999999998752 45789999999 8999998 588999999999999999998
Q ss_pred CCCCC-CCCHHHHHHHHHHHHHhhhhhhhHhHHhhccc--hhhHHHHHHHHHHHHHHHHHhcCCCCcccCCCCChhHHHH
Q 038634 80 NNPIL-PQDPYQRAMARFWGKFIDEKALATRMKANFAE--GKERELVTEEFFQQMKFLENELNGKDFFGGETIGFVDIVA 156 (222)
Q Consensus 80 ~~~l~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l 156 (222)
++.++ |.++.+++++++|+.++.+.+.+.+...+... +...+...+.+.+.|+.||++|++++||+|+++|+||+++
T Consensus 79 ~~~l~~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~s~ADi~l 158 (201)
T PRK10542 79 DRQLLAPVGSLSRYHTIEWLNYIATELHKGFTPLFRPDTPEEYKPTVRAQLEKKFQYVDEALADEQWICGQRFTIADAYL 158 (201)
T ss_pred ccccCCCCCcHHHHHHHHHHHHHHhhhhhhhhhccCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCeeeCCCCcHHhHHH
Confidence 77766 67788999999999988776766554444321 2222445677889999999999988999999999999999
Q ss_pred HHHHHHHHhhhhhhccccCCcCccchHHHHHHHHHccccccccCCC
Q 038634 157 IVVAIWFPLTQEVLGVETFTEEKFPVLFKWIRKITEIDVVNECRPP 202 (222)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~ 202 (222)
++++.+.... +.+. +.+|+|.+|++++.++|++++++.+
T Consensus 159 ~~~~~~~~~~----~~~~---~~~p~l~~w~~~~~~~p~~k~~~~~ 197 (201)
T PRK10542 159 FTVLRWAYAV----KLNL---EGLEHIAAYMQRVAERPAVAAALKA 197 (201)
T ss_pred HHHHHHhhcc----CCCc---ccchHHHHHHHHHHcCHHHHHHHHH
Confidence 9988777322 3333 6799999999999999999988654
No 8
>PRK13972 GSH-dependent disulfide bond oxidoreductase; Provisional
Probab=100.00 E-value=3.9e-35 Score=224.94 Aligned_cols=187 Identities=21% Similarity=0.294 Sum_probs=151.0
Q ss_pred eEEEeecCChHHHHHHHHHHHcCCCceEEeCCCCC---CchhhhhhCCCCCcccEEEe-----CC--eeeeehHHHHHHH
Q 038634 5 VKLYGTWSSPFSRRIELALKLKGVPFEYIEEDLSN---KSPELLKYNPVHKKIPVLVH-----NS--KPIAESQVILEYI 74 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~---~~~~~~~~~p~~g~vP~L~~-----~g--~~i~es~~I~~yL 74 (222)
|+||+.+ ++++++|+++|+++||+|+.+.+++.. .+++|+++||. |+||+|++ +| .+|+||.||++||
T Consensus 2 ~~Ly~~~-~~~~~~v~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~iNP~-gkVP~L~~~~~~d~g~~~~L~ES~AI~~YL 79 (215)
T PRK13972 2 IDLYFAP-TPNGHKITLFLEEAELDYRLIKVDLGKGGQFRPEFLRISPN-NKIPAIVDHSPADGGEPLSLFESGAILLYL 79 (215)
T ss_pred eEEEECC-CCChHHHHHHHHHcCCCcEEEEecCcccccCCHHHHhhCcC-CCCCEEEeCCCCCCCCceeEEcHHHHHHHH
Confidence 7999887 789999999999999999999998753 46899999999 89999996 45 4799999999999
Q ss_pred HhhcCCCCCCCCCHHHHHHHHHHHHHhhhhhhhHhHHhh-cc------chhhHHHHHHHHHHHHHHHHHhcCCCCcccCC
Q 038634 75 DEIWNNNPILPQDPYQRAMARFWGKFIDEKALATRMKAN-FA------EGKERELVTEEFFQQMKFLENELNGKDFFGGE 147 (222)
Q Consensus 75 ~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~ 147 (222)
+++++ .+.|.++.+++++.+|+.+..+.+.+.+.... +. .....+.....+.+.|..||++|.+++|++|+
T Consensus 80 ~~~~~--~l~p~~~~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~Gd 157 (215)
T PRK13972 80 AEKTG--LFLSHETRERAATLQWLFWQVGGLGPMLGQNHHFNHAAPQTIPYAIERYQVETQRLYHVLNKRLENSPWLGGE 157 (215)
T ss_pred HHhcC--CCCCCCHHHHHHHHHHHHHHhhccCcceeeeeeeeccCCCCCchHHHHHHHHHHHHHHHHHHHhccCccccCC
Confidence 99986 37788999999999999988776655432211 11 11223445567888999999999988999999
Q ss_pred CCChhHHHHHHHHHHHHhhhhhhccccCCcCccchHHHHHHHHHccccccccCCC
Q 038634 148 TIGFVDIVAIVVAIWFPLTQEVLGVETFTEEKFPVLFKWIRKITEIDVVNECRPP 202 (222)
Q Consensus 148 ~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~ 202 (222)
++|+|||++++.+.... .. +.+ .+.||+|.+|+++|.++|++++++..
T Consensus 158 ~~t~ADi~l~~~~~~~~---~~-~~~---~~~~P~l~~w~~r~~~rp~~~~~~~~ 205 (215)
T PRK13972 158 NYSIADIACWPWVNAWT---RQ-RID---LAMYPAVKNWHERIRSRPATGQALLK 205 (215)
T ss_pred CCCHHHHHHHHHHHHHh---hc-CCc---chhCHHHHHHHHHHHhCHHHHHHHHH
Confidence 99999999988764432 11 333 37899999999999999999886544
No 9
>TIGR01262 maiA maleylacetoacetate isomerase. Maleylacetoacetate isomerase is an enzyme of tyrosine and phenylalanine catabolism. It requires glutathione and belongs by homology to the zeta family of glutathione S-transferases. The enzyme (EC 5.2.1.2) is described as active also on maleylpyruvate, and the example from a Ralstonia sp. catabolic plasmid is described as a maleylpyruvate isomerase involved in gentisate catabolism.
Probab=100.00 E-value=8.7e-35 Score=222.29 Aligned_cols=190 Identities=26% Similarity=0.444 Sum_probs=155.9
Q ss_pred EEEeecCChHHHHHHHHHHHcCCCceEEeCCCC----CCchhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHhhcCCC
Q 038634 6 KLYGTWSSPFSRRIELALKLKGVPFEYIEEDLS----NKSPELLKYNPVHKKIPVLVHNSKPIAESQVILEYIDEIWNNN 81 (222)
Q Consensus 6 ~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~----~~~~~~~~~~p~~g~vP~L~~~g~~i~es~~I~~yL~~~~~~~ 81 (222)
+||+++.||+++++|++|.++||+|+.+.++.. ...++++++||. |+||+|+++|.+|+||.+|++||++++++.
T Consensus 1 ~Ly~~~~s~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~~~nP~-g~vP~L~~~g~~l~ES~aI~~yl~~~~~~~ 79 (210)
T TIGR01262 1 KLYSYWRSSCSYRVRIALALKGIDYEYVPVNLLRDGEQRSPEFLALNPQ-GLVPTLDIDGEVLTQSLAIIEYLEETYPDP 79 (210)
T ss_pred CcccCCCCCchHHHHHHHHHCCCCceEEecccccccccCChhhhhcCCC-CcCCEEEECCEEeecHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999998862 246789999998 899999999999999999999999999887
Q ss_pred CCCCCCHHHHHHHHHHHHHhhhhhhhHh----HHhhcc----chh-hHHHHHHHHHHHHHHHHHhcCC--CCcccCCCCC
Q 038634 82 PILPQDPYQRAMARFWGKFIDEKALATR----MKANFA----EGK-ERELVTEEFFQQMKFLENELNG--KDFFGGETIG 150 (222)
Q Consensus 82 ~l~p~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~----~~~-~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~t 150 (222)
.++|.++.+++++++|+.++...+.... ...+.. ... ..+...+.+.+.|+.||++|++ ++|++|+++|
T Consensus 80 ~l~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~T 159 (210)
T TIGR01262 80 PLLPADPIKRARVRALALLIACDIHPLNNLRVLQYLREKLGVEEEARNRWYQHWISKGFAALEALLQPHAGAFCVGDTPT 159 (210)
T ss_pred CCCCCCHHHHHHHHHHHHHHhcccChhhhhhHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEeeCCCCC
Confidence 8999999999999999988765444321 111111 111 2233455688999999999985 5699999999
Q ss_pred hhHHHHHHHHHHHHhhhhhhccccCCcCccchHHHHHHHHHccccccccCCCh
Q 038634 151 FVDIVAIVVAIWFPLTQEVLGVETFTEEKFPVLFKWIRKITEIDVVNECRPPR 203 (222)
Q Consensus 151 ~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~ 203 (222)
+|||++++++.++. .. +..+ +.||+|.+|+++|.++|++++++...
T Consensus 160 ~ADi~~~~~l~~~~---~~-~~~~---~~~p~l~~~~~~~~~rp~~~~~~~~~ 205 (210)
T TIGR01262 160 LADLCLVPQVYNAE---RF-GVDL---TPYPTLRRIAAALAALPAFQRAHPEN 205 (210)
T ss_pred HHHHHHHHHHHHHH---Hc-CCCc---ccchHHHHHHHHHhcCHHHHHhCccc
Confidence 99999999987763 11 3322 77999999999999999999988765
No 10
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-34 Score=221.63 Aligned_cols=185 Identities=31% Similarity=0.537 Sum_probs=159.5
Q ss_pred eEEEeecCChHHHHHHHHHHHcCCCceEEeCCCC--CCchhhhhhCCCCCcccEEEeCCe-eeeehHHHHHHHHhhcCCC
Q 038634 5 VKLYGTWSSPFSRRIELALKLKGVPFEYIEEDLS--NKSPELLKYNPVHKKIPVLVHNSK-PIAESQVILEYIDEIWNNN 81 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~--~~~~~~~~~~p~~g~vP~L~~~g~-~i~es~~I~~yL~~~~~~~ 81 (222)
|+||+.+.||+++++++++.++|++|+.+.++.. .++++|+.+||. |+||+|+++|. +|+||.+|++||++++|++
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~g~~ye~~~v~~~~~~~~~~~~~~nP~-gkVPvL~~~~~~~l~ES~AI~~YL~~~~~~~ 79 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEKGLPYEIVLVDLDAEQKPPDFLALNPL-GKVPALVDDDGEVLTESGAILEYLAERYPGP 79 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHcCCCceEEEeCcccccCCHHHHhcCCC-CCCCEEeeCCCCeeecHHHHHHHHHhhCCCC
Confidence 6899999999999999999999999999999987 478999999999 89999997664 9999999999999999987
Q ss_pred CCCCCCHH---HHHHHHHHHHHhhhhhhhHhHHhhcc--------chhhHHHHHHHHHHHHHHHHHhcCCCCcccCCCCC
Q 038634 82 PILPQDPY---QRAMARFWGKFIDEKALATRMKANFA--------EGKERELVTEEFFQQMKFLENELNGKDFFGGETIG 150 (222)
Q Consensus 82 ~l~p~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t 150 (222)
.++|.++. +++....|+.++...+.+.+...... .....+.....+...+..+|..|++++|++|+++|
T Consensus 80 ~l~p~~~~~r~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t 159 (211)
T COG0625 80 PLLPADPLARRARALLLWWLFFAASDLHPVIGQRRRALLGSEPELLEAALEAARAEIRALLALLEALLADGPYLAGDRFT 159 (211)
T ss_pred CcCCCCchhHHHHHHHHHHHHHHHhcccHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHhccCCcccCCCCC
Confidence 79998885 78888899999887777776654433 23445667788999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhhhhhccccCCcCccchHHHHHHHHHcccccc
Q 038634 151 FVDIVAIVVAIWFPLTQEVLGVETFTEEKFPVLFKWIRKITEIDVVN 197 (222)
Q Consensus 151 ~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~ 197 (222)
+||+++++.+.++... +... +.+|++.+|++|+.++|+++
T Consensus 160 iAD~~~~~~~~~~~~~----~~~~---~~~p~l~~w~~r~~~rp~~~ 199 (211)
T COG0625 160 IADIALAPLLWRLALL----GEEL---ADYPALKAWYERVLARPAFR 199 (211)
T ss_pred HHHHHHHHHHHHhhhc----Cccc---ccChHHHHHHHHHHcCCchh
Confidence 9999999988886322 3222 67999999999999999965
No 11
>PRK10357 putative glutathione S-transferase; Provisional
Probab=100.00 E-value=4.6e-34 Score=217.06 Aligned_cols=192 Identities=24% Similarity=0.362 Sum_probs=156.0
Q ss_pred eEEEeecCChHHHHHHHHHHHcCCCceEEeCCCCCCchhhhhhCCCCCcccEEE-eCCeeeeehHHHHHHHHhhcCCCCC
Q 038634 5 VKLYGTWSSPFSRRIELALKLKGVPFEYIEEDLSNKSPELLKYNPVHKKIPVLV-HNSKPIAESQVILEYIDEIWNNNPI 83 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~-~~g~~i~es~~I~~yL~~~~~~~~l 83 (222)
|+||+++.||++++|+++|+++|++|+.+.++....++++.++||. |+||+|+ ++|.+|+||.+|++||+++++++.|
T Consensus 1 ~~Ly~~~~s~~~~~v~~~L~~~gv~ye~~~~~~~~~~~~~~~~nP~-g~vP~L~~~~g~~l~eS~aI~~yL~~~~~~~~l 79 (202)
T PRK10357 1 MKLIGSYTSPFVRKISILLLEKGITFEFVNELPYNADNGVAQYNPL-GKVPALVTEEGECWFDSPIIAEYIELLNVAPAM 79 (202)
T ss_pred CeeecCCCCchHHHHHHHHHHcCCCCeEEecCCCCCchhhhhcCCc-cCCCeEEeCCCCeeecHHHHHHHHHHhCCCCCC
Confidence 5899999999999999999999999999988876667788889999 8999998 6789999999999999999987779
Q ss_pred CCCCHHHHHHHHHHHHHhhhhhhhHhHHhh---c-c---chhhHHHHHHHHHHHHHHHHHhcCCCCcccCCCCChhHHHH
Q 038634 84 LPQDPYQRAMARFWGKFIDEKALATRMKAN---F-A---EGKERELVTEEFFQQMKFLENELNGKDFFGGETIGFVDIVA 156 (222)
Q Consensus 84 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~---~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l 156 (222)
+|.++.+++++++|+.++++.+...+.... . . .....+.....+...|+.||++|++++ ++|+++|+||+++
T Consensus 80 ~p~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~-l~Gd~~t~ADi~l 158 (202)
T PRK10357 80 LPRDPLAALRVRQLEALADGIMDAALVSVREQARPAAQQSEDELLRQREKINRSLDALEGYLVDGT-LKTDTVNLATIAI 158 (202)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHHHHHHHHHhhccCc-ccCCCcCHHHHHH
Confidence 999999999999998887664443321111 1 1 112223456778899999999998878 9999999999999
Q ss_pred HHHHHHHHhhhhhhccccCCcCccchHHHHHHHHHccccccccCCC
Q 038634 157 IVVAIWFPLTQEVLGVETFTEEKFPVLFKWIRKITEIDVVNECRPP 202 (222)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~ 202 (222)
++.+.++..... +... ..++|+|.+|++++.+||+++.+.+.
T Consensus 159 ~~~l~~~~~~~~--~~~~--~~~~p~l~~~~~~i~~rp~~~~~~~~ 200 (202)
T PRK10357 159 ACAVGYLNFRRV--APGW--CVDRPHLVKLVENLFQRESFARTEPP 200 (202)
T ss_pred HHHHHHHHhccc--Ccch--hhcChHHHHHHHHHhcChhhhhcCCC
Confidence 998877643111 1111 26799999999999999999998764
No 12
>KOG0868 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.4e-35 Score=205.16 Aligned_cols=193 Identities=24% Similarity=0.412 Sum_probs=163.7
Q ss_pred cceEEEeecCChHHHHHHHHHHHcCCCceEEeCCCC----CCchhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHhhc
Q 038634 3 EEVKLYGTWSSPFSRRIELALKLKGVPFEYIEEDLS----NKSPELLKYNPVHKKIPVLVHNSKPIAESQVILEYIDEIW 78 (222)
Q Consensus 3 ~~~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~----~~~~~~~~~~p~~g~vP~L~~~g~~i~es~~I~~yL~~~~ 78 (222)
.+.+||++..|.+++|||++|+.+||+|+...|++- ....+|.++||+ ++||+|++||.+|+||.||+.||++.+
T Consensus 4 ~KpiLYSYWrSSCswRVRiALaLK~iDYey~PvnLlk~~~q~~~ef~~iNPm-~kVP~L~i~g~tl~eS~AII~YLeEt~ 82 (217)
T KOG0868|consen 4 AKPILYSYWRSSCSWRVRIALALKGIDYEYKPVNLLKEEDQSDSEFKEINPM-EKVPTLVIDGLTLTESLAIIEYLEETY 82 (217)
T ss_pred ccchhhhhhcccchHHHHHHHHHcCCCcceeehhhhcchhhhhhHHhhcCch-hhCCeEEECCEEeehHHHHHHHHHhcC
Confidence 588999999999999999999999999999999875 255699999999 899999999999999999999999999
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhhhhhhhHhHHhh---ccchh---hHHHHHHHHHHHHHHHHHhcCC--CCcccCCCCC
Q 038634 79 NNNPILPQDPYQRAMARFWGKFIDEKALATRMKAN---FAEGK---ERELVTEEFFQQMKFLENELNG--KDFFGGETIG 150 (222)
Q Consensus 79 ~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~t 150 (222)
|++.|+|+|+..|+.+++++..+.+.+-+.-.... .+.++ ...=+...+.+-+..||..|.. |.|.+||++|
T Consensus 83 P~ppLLP~d~~KRA~~r~i~~~i~sgIQPlQNl~vl~~l~ek~~~~~~~W~q~~ItkGF~ALEklL~~~aGkycvGDevt 162 (217)
T KOG0868|consen 83 PDPPLLPKDPHKRAKARAISLLIASGIQPLQNLSVLKMLNEKEPGYGDQWAQHFITKGFTALEKLLKSHAGKYCVGDEVT 162 (217)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHHhCCCcchhhHHHHHhcccccchhhHHHHHHHHHhHHHHHHHHHHccCCcccCceee
Confidence 99999999999999999999988887766432211 12221 2233456677889999999964 8899999999
Q ss_pred hhHHHHHHHHHHHHhhhhhhccccCCcCccchHHHHHHHHHccccccccCCCh
Q 038634 151 FVDIVAIVVAIWFPLTQEVLGVETFTEEKFPVLFKWIRKITEIDVVNECRPPR 203 (222)
Q Consensus 151 ~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~ 203 (222)
+||+++.+.++..+.. ..+. ..||-+.+..+.+...|+|+...+++
T Consensus 163 iADl~L~pqv~nA~rf----~vdl---~PYPti~ri~e~l~elpaFq~ahP~n 208 (217)
T KOG0868|consen 163 IADLCLPPQVYNANRF----HVDL---TPYPTITRINEELAELPAFQAAHPDN 208 (217)
T ss_pred hhhhccchhhhhhhhc----cccC---CcCchHHHHHHHHHhCHHHHhcCCCC
Confidence 9999999988777422 4444 88999999999999999999988765
No 13
>PTZ00057 glutathione s-transferase; Provisional
Probab=100.00 E-value=1.4e-33 Score=214.65 Aligned_cols=192 Identities=19% Similarity=0.252 Sum_probs=144.4
Q ss_pred CCcceEEEeecCChHHHHHHHHHHHcCCCceEEeCCCCCCchhhh--------hhCCCCCcccEEEeCCeeeeehHHHHH
Q 038634 1 MAEEVKLYGTWSSPFSRRIELALKLKGVPFEYIEEDLSNKSPELL--------KYNPVHKKIPVLVHNSKPIAESQVILE 72 (222)
Q Consensus 1 M~~~~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~--------~~~p~~g~vP~L~~~g~~i~es~~I~~ 72 (222)
|+++++||+++.+++++++|++|+++|++|+.+.++. .. +++. ..||+ |+||+|++||.+|+||.||++
T Consensus 1 m~~~~~L~y~~~~~~~~~vrl~L~~~gi~ye~~~~~~-~~-~~~~~~~~~~~~~~nP~-g~vP~L~~~~~~l~eS~AI~~ 77 (205)
T PTZ00057 1 MAEEIVLYYFDARGKAELIRLIFAYLGIEYTDKRFGE-NG-DAFIEFKNFKKEKDTPF-EQVPILEMDNIIFAQSQAIVR 77 (205)
T ss_pred CCCceEEEecCCCcchHHHHHHHHHcCCCeEEEeccc-cc-hHHHHHHhccccCCCCC-CCCCEEEECCEEEecHHHHHH
Confidence 7778999999999999999999999999999997743 22 2332 47999 899999999999999999999
Q ss_pred HHHhhcCCCCCCCCCHHHHHHHHHHHHHhhhhhhhHhHHhhccchhhHHHHHHHHHHHHHHHHHhcCC--CCcccCCCCC
Q 038634 73 YIDEIWNNNPILPQDPYQRAMARFWGKFIDEKALATRMKANFAEGKERELVTEEFFQQMKFLENELNG--KDFFGGETIG 150 (222)
Q Consensus 73 yL~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~t 150 (222)
||+++++ +.+.+..++..++.+.....+ +...+...........+...+.+.+.+..||++|++ ++|++|+++|
T Consensus 78 YLa~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~Gd~~T 153 (205)
T PTZ00057 78 YLSKKYK---ICGESELNEFYADMIFCGVQD-IHYKFNNTNLFKQNETTFLNEELPKWSGYFENILKKNHCNYFVGDNLT 153 (205)
T ss_pred HHHHHcC---CCCCCHHHHHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeCCccc
Confidence 9999997 455565555455443332222 222111111111222234567788999999999975 3799999999
Q ss_pred hhHHHHHHHHHHHHhhhhhhccccCCcCccchHHHHHHHHHccccccccCCChhh
Q 038634 151 FVDIVAIVVAIWFPLTQEVLGVETFTEEKFPVLFKWIRKITEIDVVNECRPPREK 205 (222)
Q Consensus 151 ~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~ 205 (222)
+||+++++++.++... .+.++ ++||+|.+|++|+.++|++++++.++.+
T Consensus 154 ~AD~~l~~~~~~~~~~---~~~~l---~~~P~l~~~~~r~~~~P~~k~y~~~~~~ 202 (205)
T PTZ00057 154 YADLAVFNLYDDIETK---YPNSL---KNFPLLKAHNEFISNLPNIKNYISNRKE 202 (205)
T ss_pred HHHHHHHHHHHHHHHh---Chhhh---ccChhHHHHHHHHHhChHHHHHHHhCCC
Confidence 9999999988776421 13333 7899999999999999999999877653
No 14
>PRK11752 putative S-transferase; Provisional
Probab=100.00 E-value=2.7e-33 Score=220.39 Aligned_cols=197 Identities=20% Similarity=0.261 Sum_probs=153.4
Q ss_pred cceEEEeecCChHHHHHHHHHHHc------CCCceEEeCCCC---CCchhhhhhCCCCCcccEEEeC----CeeeeehHH
Q 038634 3 EEVKLYGTWSSPFSRRIELALKLK------GVPFEYIEEDLS---NKSPELLKYNPVHKKIPVLVHN----SKPIAESQV 69 (222)
Q Consensus 3 ~~~~Ly~~~~sp~~~~v~~~l~~~------gi~~~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~----g~~i~es~~ 69 (222)
..|+||+.+ ||++++|+++|+++ |++|+.+.+++. ..+++|+++||. |+||+|+++ |.+|+||.+
T Consensus 43 ~~~~Ly~~~-s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~~~~~e~~~iNP~-GkVP~Lv~~dg~~~~~L~ES~A 120 (264)
T PRK11752 43 HPLQLYSLG-TPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGDQFSSGFVEINPN-SKIPALLDRSGNPPIRVFESGA 120 (264)
T ss_pred CCeEEecCC-CCchHHHHHHHHHHHhccCCCCceEEEEecCccccccCHHHHhhCCC-CCCCEEEeCCCCCCeEEEcHHH
Confidence 369999975 99999999999997 899999998864 357899999999 899999974 369999999
Q ss_pred HHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHhhhhhhhHhH----Hhhc-cc---hhhHHHHHHHHHHHHHHHHHhcCCC
Q 038634 70 ILEYIDEIWNNNPILPQDPYQRAMARFWGKFIDEKALATRM----KANF-AE---GKERELVTEEFFQQMKFLENELNGK 141 (222)
Q Consensus 70 I~~yL~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~---~~~~~~~~~~~~~~l~~le~~L~~~ 141 (222)
|++||++.++. |+|.++.+++++++|+.+....+ ..+. ..+. .. ....+....++.+.|+.||++|+++
T Consensus 121 Il~YL~~~~~~--L~P~~~~era~v~~wl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~le~~L~~~ 197 (264)
T PRK11752 121 ILLYLAEKFGA--FLPKDLAARTETLNWLFWQQGSA-PFLGGGFGHFYAYAPEKIEYAINRFTMEAKRQLDVLDKQLAEH 197 (264)
T ss_pred HHHHHHHhcCC--cCCCCHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHhccC
Confidence 99999999973 99999999999999999876542 2111 1111 11 1122444567888999999999988
Q ss_pred CcccCCCCChhHHHHHHHHHHHHhhhhhhccccCCcCccchHHHHHHHHHccccccccCCChh
Q 038634 142 DFFGGETIGFVDIVAIVVAIWFPLTQEVLGVETFTEEKFPVLFKWIRKITEIDVVNECRPPRE 204 (222)
Q Consensus 142 ~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~ 204 (222)
+||+|+++|+|||++++++.++............+.+.||+|.+|+++|.++|+++++...+.
T Consensus 198 ~fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~~~~~~P~L~~w~~rv~~rPs~k~~~~~~~ 260 (264)
T PRK11752 198 EYIAGDEYTIADIAIWPWYGNLVLGNLYDAAEFLDVGSYKHVQRWAKEIAERPAVKRGRIVNR 260 (264)
T ss_pred CCCCCCccCHHHHHHHHHHHHHhhccccccccccCcccCHHHHHHHHHHHhCHHHHHHHhccc
Confidence 999999999999999998877642110001111123779999999999999999999776543
No 15
>PLN02378 glutathione S-transferase DHAR1
Probab=100.00 E-value=8e-33 Score=211.60 Aligned_cols=187 Identities=20% Similarity=0.299 Sum_probs=146.2
Q ss_pred ecCChHHHHHHHHHHHcCCCceEEeCCCCCCchhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHhhcCCCCCCCCCHH
Q 038634 10 TWSSPFSRRIELALKLKGVPFEYIEEDLSNKSPELLKYNPVHKKIPVLVHNSKPIAESQVILEYIDEIWNNNPILPQDPY 89 (222)
Q Consensus 10 ~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~i~es~~I~~yL~~~~~~~~l~p~~~~ 89 (222)
+..||+|+|++++|+++|++|+.+.+++..++++|+++||. |+||+|+++|.+|+||.+|++||++++++..+ .++.
T Consensus 17 ~~~~p~~~rv~~~L~e~gl~~e~~~v~~~~~~~~~l~inP~-G~VPvL~~~~~~l~ES~aI~~YL~~~~~~~~l--~~~~ 93 (213)
T PLN02378 17 LGDCPFSQRALLTLEEKSLTYKIHLINLSDKPQWFLDISPQ-GKVPVLKIDDKWVTDSDVIVGILEEKYPDPPL--KTPA 93 (213)
T ss_pred CCCCcchHHHHHHHHHcCCCCeEEEeCcccCCHHHHHhCCC-CCCCEEEECCEEecCHHHHHHHHHHhCCCCCC--CCHH
Confidence 45699999999999999999999999998888899999999 89999999999999999999999999987555 3566
Q ss_pred HHHHHHHHHHHhhhhhhhHhHHhhccchhhHHHHHHHHHHHHHHHHHhcC--CCCcccCCCCChhHHHHHHHHHHHHhhh
Q 038634 90 QRAMARFWGKFIDEKALATRMKANFAEGKERELVTEEFFQQMKFLENELN--GKDFFGGETIGFVDIVAIVVAIWFPLTQ 167 (222)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~--~~~~l~G~~~t~aD~~l~~~l~~~~~~~ 167 (222)
+++.+...+ ...+...+... ...+...+.+.+.|+.||++|. +++|++|+++|+||+++++.+.++....
T Consensus 94 ~~a~i~~~~-------~~~~~~~~~~~-~~~~~~~~~~~~~l~~le~~L~~~~~~fl~Gd~~T~ADi~l~~~~~~l~~~~ 165 (213)
T PLN02378 94 EFASVGSNI-------FGTFGTFLKSK-DSNDGSEHALLVELEALENHLKSHDGPFIAGERVSAVDLSLAPKLYHLQVAL 165 (213)
T ss_pred HHHHHHHHH-------HHHHHHHHhcC-ChhhHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCchhhHHHHHHHHHHHHHH
Confidence 666554432 22222222221 1223344677888999999997 4789999999999999999987764321
Q ss_pred -hhhccccCCcCccchHHHHHHHHHccccccccCCChhhhHHH
Q 038634 168 -EVLGVETFTEEKFPVLFKWIRKITEIDVVNECRPPREKHLAY 209 (222)
Q Consensus 168 -~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~~~ 209 (222)
...+... .+.||+|.+|+++|.++|++++++.........
T Consensus 166 ~~~~~~~~--~~~~p~l~~w~~~~~~rpa~~~~~~~~~~~~~~ 206 (213)
T PLN02378 166 GHFKSWSV--PESFPHVHNYMKTLFSLDSFEKTKTEEKYVISG 206 (213)
T ss_pred HHhcCCCc--hhHhHHHHHHHHHHhcCCCeecccCChHHHHHH
Confidence 1212222 378999999999999999999998887665543
No 16
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=100.00 E-value=2e-32 Score=214.43 Aligned_cols=191 Identities=19% Similarity=0.283 Sum_probs=151.1
Q ss_pred ecCChHHHHHHHHHHHcCCCceEEeCCCCCCchhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHhhcCCCCCCCCCHH
Q 038634 10 TWSSPFSRRIELALKLKGVPFEYIEEDLSNKSPELLKYNPVHKKIPVLVHNSKPIAESQVILEYIDEIWNNNPILPQDPY 89 (222)
Q Consensus 10 ~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~i~es~~I~~yL~~~~~~~~l~p~~~~ 89 (222)
...||+|++++++|+++|++|+.+.+++..++++|+++||. |+||+|+++|.+|+||.+|++||++++|++.+. ++.
T Consensus 70 ~g~cp~s~rV~i~L~ekgi~ye~~~vdl~~~~~~fl~iNP~-GkVPvL~~d~~~L~ES~aI~~YL~e~~p~~~L~--~~~ 146 (265)
T PLN02817 70 LGDCPFCQRVLLTLEEKHLPYDMKLVDLTNKPEWFLKISPE-GKVPVVKLDEKWVADSDVITQALEEKYPDPPLA--TPP 146 (265)
T ss_pred CCCCcHHHHHHHHHHHcCCCCEEEEeCcCcCCHHHHhhCCC-CCCCEEEECCEEEecHHHHHHHHHHHCCCCCCC--CHH
Confidence 34599999999999999999999999988888999999999 899999999999999999999999999876664 566
Q ss_pred HHHHHHHHHHHhhhhhhhHhHHhhccchhhHHHHHHHHHHHHHHHHHhcCC-CCcccCCCCChhHHHHHHHHHHHHhhhh
Q 038634 90 QRAMARFWGKFIDEKALATRMKANFAEGKERELVTEEFFQQMKFLENELNG-KDFFGGETIGFVDIVAIVVAIWFPLTQE 168 (222)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~-~~~l~G~~~t~aD~~l~~~l~~~~~~~~ 168 (222)
+++.+.+++. ..+...+.. ....+...+.+.+.|..||++|++ ++|++|+++|+|||++++.+.++.....
T Consensus 147 era~i~~~l~-------~~~~~~~~~-~~~~~~~~~~l~~~l~~LE~~L~~~g~yl~Gd~~SlADi~l~p~L~~l~~~~~ 218 (265)
T PLN02817 147 EKASVGSKIF-------STFIGFLKS-KDPGDGTEQALLDELTSFDDYIKENGPFINGEKISAADLSLGPKLYHLEIALG 218 (265)
T ss_pred HHHHHHHHHH-------HHHHHHhcc-CCcchHHHHHHHHHHHHHHHHHhcCCCeeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 7777765442 112222222 111123345677889999999974 7999999999999999999887753222
Q ss_pred -hhccccCCcCccchHHHHHHHHHccccccccCCChhhhHHHHHHH
Q 038634 169 -VLGVETFTEEKFPVLFKWIRKITEIDVVNECRPPREKHLAYVKAR 213 (222)
Q Consensus 169 -~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 213 (222)
..++++ .+.+|+|.+|++++.++|+|+++.+..++..+.+...
T Consensus 219 ~~~~~~i--~~~~P~L~~w~~ri~~rps~~~~~~~~~~~~~~~~~~ 262 (265)
T PLN02817 219 HYKNWSV--PDSLPFVKSYMKNIFSMESFVKTRALPEDVIAGWRPK 262 (265)
T ss_pred HhcCCCc--cccCHHHHHHHHHHhcchhHhhcCCCHHHHHHHhHhh
Confidence 223333 3789999999999999999999999888877766543
No 17
>KOG0867 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-31 Score=205.90 Aligned_cols=197 Identities=25% Similarity=0.365 Sum_probs=166.1
Q ss_pred ceEEEeecCChHHHHHHHHHHHcCCCceEEeCCCC---CCchhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHhhcC-
Q 038634 4 EVKLYGTWSSPFSRRIELALKLKGVPFEYIEEDLS---NKSPELLKYNPVHKKIPVLVHNSKPIAESQVILEYIDEIWN- 79 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~g~~i~es~~I~~yL~~~~~- 79 (222)
.|+||+++.+|.++++.++++++|++|+.+.++.. +.+++|+.+||. |+||+|+++|..++||.||+.||.++|.
T Consensus 2 ~~~ly~~~~s~~~r~vl~~~~~~~l~~e~~~v~~~~ge~~~pefl~~nP~-~kVP~l~d~~~~l~eS~AI~~Yl~~ky~~ 80 (226)
T KOG0867|consen 2 KLKLYGHLGSPPARAVLIAAKELGLEVELKPVDLVKGEQKSPEFLKLNPL-GKVPALEDGGLTLWESHAILRYLAEKYGP 80 (226)
T ss_pred CceEeecCCCcchHHHHHHHHHcCCceeEEEeeccccccCCHHHHhcCcC-CCCCeEecCCeEEeeHHHHHHHHHHHcCC
Confidence 48999999999999999999999999999987764 589999999999 8999999999999999999999999996
Q ss_pred CCC-CCCCCHHHHHHHHHHHHHhhhhhhhHh--HHhhc-----c--chhhHHHHHHHHHHHHHHHHHhcCCCCcccCCCC
Q 038634 80 NNP-ILPQDPYQRAMARFWGKFIDEKALATR--MKANF-----A--EGKERELVTEEFFQQMKFLENELNGKDFFGGETI 149 (222)
Q Consensus 80 ~~~-l~p~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-----~--~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~ 149 (222)
... ++|.+..+++.+++|+.+.++.+.+.. ...+. . ...........+.+.++.+|+.|.++.|+.|+++
T Consensus 81 ~~~~l~p~~~~~ra~v~~~l~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~yl~g~~~ 160 (226)
T KOG0867|consen 81 LGGILLPKDLKERAIVDQWLEFENGVLDPVTFERPILAPLLVGLPLNPTAVKELEAKLRKALDNLERFLKTQVYLAGDQL 160 (226)
T ss_pred CCcccCCcCHHHHHHHHHHHHhhhcccccccccceeeecceecccCcchhhHHHHHHHHHHHHHHHHHHccCCcccCCcc
Confidence 344 999999999999999999888777763 22222 1 4555577788999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHhhhhhhccccCCcCccchHHHHHHHHHccccccccCCChhh
Q 038634 150 GFVDIVAIVVAIWFPLTQEVLGVETFTEEKFPVLFKWIRKITEIDVVNECRPPREK 205 (222)
Q Consensus 150 t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~ 205 (222)
|+||+.+.+.+..+.. ...... ...++|++.+|++++.++|++++.......
T Consensus 161 tlADl~~~~~~~~~~~-~~~~~~---~~~~~p~v~~W~~~~~~~P~~~e~~~~~~~ 212 (226)
T KOG0867|consen 161 TLADLSLASTLSQFQG-KFATEK---DFEKYPKVARWYERIQKRPAYEEANEKGAA 212 (226)
T ss_pred cHHHHHHhhHHHHHhH-hhhhhh---hhhhChHHHHHHHHHHhCccHHHHHHHHHH
Confidence 9999999998888742 111121 248899999999999999998776544433
No 18
>PRK10387 glutaredoxin 2; Provisional
Probab=99.98 E-value=2.7e-31 Score=202.99 Aligned_cols=178 Identities=17% Similarity=0.169 Sum_probs=137.4
Q ss_pred eEEEeecCChHHHHHHHHHHHcCCCceEEeCCCCCCchhhhhhCCCCCcccEEE-eCCeeeeehHHHHHHHHhhcCCCCC
Q 038634 5 VKLYGTWSSPFSRRIELALKLKGVPFEYIEEDLSNKSPELLKYNPVHKKIPVLV-HNSKPIAESQVILEYIDEIWNNNPI 83 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~-~~g~~i~es~~I~~yL~~~~~~~~l 83 (222)
|+||+++.||+|++++++|+++||+|+.+.++..+... ....||. |+||||+ ++|.+|+||.+|++||+++||++.+
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~~~~~~~~~-~~~~~p~-~~VPvL~~~~g~~l~eS~aI~~yL~~~~~~~~l 78 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKNIPVELIVLANDDEAT-PIRMIGQ-KQVPILQKDDGSYMPESLDIVHYIDELDGKPLL 78 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcCCCeEEEEcCCCchhh-HHHhcCC-cccceEEecCCeEecCHHHHHHHHHHhCCCccC
Confidence 68999999999999999999999999999886543222 2578998 8999995 7899999999999999999987545
Q ss_pred CCCCHHHHHHHHHHHHHhhhhhhhHhHHhhccc-------h---------------------hhHHHHHHHHHHHHHHHH
Q 038634 84 LPQDPYQRAMARFWGKFIDEKALATRMKANFAE-------G---------------------KERELVTEEFFQQMKFLE 135 (222)
Q Consensus 84 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~---------------------~~~~~~~~~~~~~l~~le 135 (222)
.+ .+++.+..|+.++...+...+...+... . ...++..+.+.+.|+.||
T Consensus 79 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le 155 (210)
T PRK10387 79 TG---KRSPAIEEWLRKVFGYLNKLLYPRFAKADLPEFATPSARQYFIDKKEASIGDFDALLAHTPGLIKEINADLRALD 155 (210)
T ss_pred CC---cccHHHHHHHHHHHHHhhcchhcccccCCCcccCCHHHHHHHHHhHHhccCCHHHHHhcCHHHHHHHHHHHHHHH
Confidence 32 2467788888777654443332221100 0 001345678889999999
Q ss_pred HhcCCCCcccCCCCChhHHHHHHHHHHHHhhhhhhccccCCcCccchHHHHHHHHHccccc
Q 038634 136 NELNGKDFFGGETIGFVDIVAIVVAIWFPLTQEVLGVETFTEEKFPVLFKWIRKITEIDVV 196 (222)
Q Consensus 136 ~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 196 (222)
++|++ +|++|+++|+||+++++.+.++... .+. ..+|+|.+|++||.+||.+
T Consensus 156 ~~L~~-~~l~G~~~s~ADi~l~~~l~~~~~~---~~~-----~~~p~l~~w~~r~~~r~~~ 207 (210)
T PRK10387 156 PLIVK-PNAVNGELSTDDIHLFPILRNLTLV---KGI-----EWPPRVADYRDNMSKKTQV 207 (210)
T ss_pred HHhcC-ccccCCCCCHHHHHHHHHHhcceee---cCC-----CCCHHHHHHHHHHHHHhCC
Confidence 99987 9999999999999999999888532 122 2369999999999999876
No 19
>KOG1695 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.8e-29 Score=185.06 Aligned_cols=195 Identities=19% Similarity=0.220 Sum_probs=158.8
Q ss_pred CCcceEEEeecCChHHHHHHHHHHHcCCCceEEeCCCCCCchhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHhhcCC
Q 038634 1 MAEEVKLYGTWSSPFSRRIELALKLKGVPFEYIEEDLSNKSPELLKYNPVHKKIPVLVHNSKPIAESQVILEYIDEIWNN 80 (222)
Q Consensus 1 M~~~~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~i~es~~I~~yL~~~~~~ 80 (222)
|. .++|+|+...+++..+|+++++.|++|++..++..+..+..+...|+ |++|+|..+|..|.||.||++||+++++
T Consensus 1 m~-~ykL~Yf~~RG~ae~iR~lf~~a~v~fEd~r~~~~~~w~~~K~~~pf-gqlP~l~vDg~~i~QS~AI~RyLArk~g- 77 (206)
T KOG1695|consen 1 MP-PYKLTYFNIRGLAEPIRLLFAYAGVSFEDKRITMEDAWEELKDKMPF-GQLPVLEVDGKKLVQSRAILRYLARKFG- 77 (206)
T ss_pred CC-ceEEEecCcchhHHHHHHHHHhcCCCcceeeeccccchhhhcccCCC-CCCCEEeECCEeeccHHHHHHHHHHHhC-
Confidence 55 79999999999999999999999999999999876655566666898 8999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhhhhhhHhHHhhccc-----hhhHH-HHHHHHHHHHHHHHHhcC--CCCcccCCCCChh
Q 038634 81 NPILPQDPYQRAMARFWGKFIDEKALATRMKANFAE-----GKERE-LVTEEFFQQMKFLENELN--GKDFFGGETIGFV 152 (222)
Q Consensus 81 ~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~l~~le~~L~--~~~~l~G~~~t~a 152 (222)
+.++++.+.+.++.+.+...+.....+...+... ....+ .........+..+++.|. +++||+||++|+|
T Consensus 78 --l~Gkt~~E~a~vD~i~d~~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~Pa~~~~~~~~~~~L~~~~sgflvGd~lT~a 155 (206)
T KOG1695|consen 78 --LAGKTEEEEAWVDMIVDQFKDFRWEIFRQPYTAPEAGKSEEELDKLYLPAKPKYFKILEKILKKNKSGFLVGDKLTWA 155 (206)
T ss_pred --cCCCCHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhccchhhhhhhhccchHHHHHHHHHHHHhCCCCeeecCcccHH
Confidence 9999999999999999887774433333333321 11111 334466778899999997 4679999999999
Q ss_pred HHHHHHHHHHHHhhhhhhccccCCcCccchHHHHHHHHHccccccccCCChhh
Q 038634 153 DIVAIVVAIWFPLTQEVLGVETFTEEKFPVLFKWIRKITEIDVVNECRPPREK 205 (222)
Q Consensus 153 D~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~ 205 (222)
|+.++..+..+... . .... ...+|+|.++.+++.++|.+++++.++..
T Consensus 156 Dl~i~e~l~~l~~~--~-~~~~--~~~~P~L~a~~~kv~~~p~ik~~i~~r~~ 203 (206)
T KOG1695|consen 156 DLVIAEHLDTLEEL--L-DPSA--LDHFPKLKAFKERVSSIPNIKKYLESRPV 203 (206)
T ss_pred HHHHHHHHHHHHHh--c-Cchh--hccChHHHHHHHHHhcCchHHHHHhcCCC
Confidence 99999999888543 1 2222 36789999999999999999999887754
No 20
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=99.96 E-value=6.9e-29 Score=189.29 Aligned_cols=176 Identities=18% Similarity=0.263 Sum_probs=132.0
Q ss_pred EEEeecCChHHHHHHHHHHHcCCCceEEeCCCCCCchhhhhhCCCCCcccEEE-eCCeeeeehHHHHHHHHhhcCCCCCC
Q 038634 6 KLYGTWSSPFSRRIELALKLKGVPFEYIEEDLSNKSPELLKYNPVHKKIPVLV-HNSKPIAESQVILEYIDEIWNNNPIL 84 (222)
Q Consensus 6 ~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~-~~g~~i~es~~I~~yL~~~~~~~~l~ 84 (222)
+||++..||+|+|+|++|.++|++|+.+.++..+. ....+.||. |+||+|+ ++|.+|+||.+|++||+++||.+.+.
T Consensus 1 ~Ly~~~~sp~~~kvr~~L~~~gl~~e~~~~~~~~~-~~~~~~np~-g~vP~l~~~~g~~l~es~~I~~yL~~~~~~~~~~ 78 (209)
T TIGR02182 1 KLYIYDHCPFCVRARMIFGLKNIPVEKHVLLNDDE-ETPIRMIGA-KQVPILQKDDGRAMPESLDIVAYFDKLDGEPLLT 78 (209)
T ss_pred CeecCCCCChHHHHHHHHHHcCCCeEEEECCCCcc-hhHHHhcCC-CCcceEEeeCCeEeccHHHHHHHHHHhCCCccCC
Confidence 58999999999999999999999999987754332 234788998 8999998 88999999999999999999865443
Q ss_pred CCCHHHHHHHHHHHHHhhhhhhhHhHHhhcc-----------------chhh-----------HHHHHHHHHHHHHHHHH
Q 038634 85 PQDPYQRAMARFWGKFIDEKALATRMKANFA-----------------EGKE-----------RELVTEEFFQQMKFLEN 136 (222)
Q Consensus 85 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~-----------~~~~~~~~~~~l~~le~ 136 (222)
|. .+..+..|+.+....+...+...+.. ..+. .++....+.+.|+.+|+
T Consensus 79 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~le~ 155 (209)
T TIGR02182 79 GK---VSPEIEAWLRKVTGYANKLLLPRFAKSDLPEFATQSARKYFTDKKEASAGNFSALLNHTPGLLEEINADLEELDK 155 (209)
T ss_pred CC---ChHHHHHHHHHHHHHhhhhhccccccCCCcccCCHHHHHHHHHHHHHhcCCHHHHHccCHHHHHHHHHHHHHHHH
Confidence 32 34566677766554443332221110 0000 13456778889999999
Q ss_pred hcCCCCcccCCCCChhHHHHHHHHHHHHhhhhhhccccCCcCccc-hHHHHHHHHHccccc
Q 038634 137 ELNGKDFFGGETIGFVDIVAIVVAIWFPLTQEVLGVETFTEEKFP-VLFKWIRKITEIDVV 196 (222)
Q Consensus 137 ~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p-~l~~~~~~~~~~p~~ 196 (222)
+|++++|++| ++|+||+++++.+.++... .+. .+| +|.+|++||.+++++
T Consensus 156 ~L~~~~~l~g-~~TiADi~l~~~l~~~~~~---~~~------~~p~~l~~w~~Ri~ar~~~ 206 (209)
T TIGR02182 156 LIDGPNAVNG-ELSEDDILVFPLLRNLTLV---AGI------NWPSRVADYLDNMSKKSKV 206 (209)
T ss_pred HHhCccccCC-CCCHHHHHHHHHhcCeeee---cCC------CCChHHHHHHHHHHHHhCC
Confidence 9999999965 6999999999998887421 121 246 999999999999875
No 21
>KOG4420 consensus Uncharacterized conserved protein (Ganglioside-induced differentiation associated protein 1, GDAP1) [Function unknown]
Probab=99.94 E-value=1.4e-26 Score=172.97 Aligned_cols=202 Identities=16% Similarity=0.232 Sum_probs=148.7
Q ss_pred ceEEEeecCChHHHHHHHHHHHcCCCceEEeCCCC---CCchhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHhhc-C
Q 038634 4 EVKLYGTWSSPFSRRIELALKLKGVPFEYIEEDLS---NKSPELLKYNPVHKKIPVLVHNSKPIAESQVILEYIDEIW-N 79 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~g~~i~es~~I~~yL~~~~-~ 79 (222)
.++||.++.|-.+||||++++++||+|+...|++. +..++|..+||. |.||||++++-+|+++..|++|++++| +
T Consensus 26 ~~vLyhhpysf~sQkVrlvi~EK~id~~~y~V~l~~geh~epwFmrlNp~-gevPVl~~g~~II~d~tqIIdYvErtf~g 104 (325)
T KOG4420|consen 26 SLVLYHHPYSFSSQKVRLVIAEKGIDCEEYDVSLPQGEHKEPWFMRLNPG-GEVPVLIHGDNIISDYTQIIDYVERTFTG 104 (325)
T ss_pred cceeeecCcccccceeeeehhhcccccceeeccCccccccCchheecCCC-CCCceEecCCeecccHHHHHHHHHHhhcc
Confidence 48999999998899999999999999999999876 478999999998 899999999999999999999999999 5
Q ss_pred CCCCCCC-CHHHHHHHHHHHHH-----hhh-----hhhhHh---------H---Hhh-----------c-----------
Q 038634 80 NNPILPQ-DPYQRAMARFWGKF-----IDE-----KALATR---------M---KAN-----------F----------- 114 (222)
Q Consensus 80 ~~~l~p~-~~~~~~~~~~~~~~-----~~~-----~~~~~~---------~---~~~-----------~----------- 114 (222)
+..|.|. ++....++...-.. +++ .+.+.+ . ... .
T Consensus 105 er~l~pe~~S~~~d~~l~~e~~l~~lpm~~~t~g~~lh~eL~~~s~iP~~~~iR~~~~k~~~~v~~l~~~e~pdla~ay~ 184 (325)
T KOG4420|consen 105 ERVLMPEVGSLQHDRVLQYEELLDALPMDAYTHGCILHPELTTDSMIPKYAEIRRHLAKATTDVMKLDHEEEPDLAEAYL 184 (325)
T ss_pred cccccccccccccHHHHHHHHHHHhcCcchhhccccccchhhccccCcccHHHHHHHHHHHHHHHHHHhhcCchhhHHHH
Confidence 6678884 22222222211110 000 000000 0 000 0
Q ss_pred -------------cchhhHHHHHHHHHHHHHHHHHhcCC----CCcccCCCCChhHHHHHHHHHHHHhhhhhhccccCCc
Q 038634 115 -------------AEGKERELVTEEFFQQMKFLENELNG----KDFFGGETIGFVDIVAIVVAIWFPLTQEVLGVETFTE 177 (222)
Q Consensus 115 -------------~~~~~~~~~~~~~~~~l~~le~~L~~----~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~ 177 (222)
.+.....+..+.+..+|...|+.|.+ ..||+|+.+|+||+.+.++++++..++.... .+..
T Consensus 185 akqkkl~~kl~~hdd~s~lkkild~l~~~Ld~VEteLe~r~~~~~wL~G~efslADVsLg~~LhRL~~Lg~e~~--yw~~ 262 (325)
T KOG4420|consen 185 AKQKKLMAKLLEHDDVSYLKKILDELAMVLDQVETELEKRKLCELWLCGCEFSLADVSLGATLHRLKFLGLEKK--YWED 262 (325)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhccccceeeccccchHHHHHHHHHHHHHHHcccHHH--hccc
Confidence 01111123355566777788888866 6799999999999999999999976654311 1224
Q ss_pred CccchHHHHHHHHHccccccccCCChhhhHH
Q 038634 178 EKFPVLFKWIRKITEIDVVNECRPPREKHLA 208 (222)
Q Consensus 178 ~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~~ 208 (222)
...|||..|++|+++|++|+++++....+.-
T Consensus 263 gsrpnle~Yf~rvrrR~sf~kvlg~~fnilr 293 (325)
T KOG4420|consen 263 GSRPNLESYFERVRRRFSFRKVLGDIFNILR 293 (325)
T ss_pred CCCccHHHHHHHHHhhhHHHHhhhhHHHHHH
Confidence 6889999999999999999999988766554
No 22
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=99.94 E-value=3.7e-25 Score=160.91 Aligned_cols=196 Identities=18% Similarity=0.285 Sum_probs=161.3
Q ss_pred ecCChHHHHHHHHHHHcCCCceEEeCCCCCCchhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHhhcCCCCCCCCCHH
Q 038634 10 TWSSPFSRRIELALKLKGVPFEYIEEDLSNKSPELLKYNPVHKKIPVLVHNSKPIAESQVILEYIDEIWNNNPILPQDPY 89 (222)
Q Consensus 10 ~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~i~es~~I~~yL~~~~~~~~l~p~~~~ 89 (222)
...||+||++.+.|.++|++|+++.||+..++++|+.+.|. |++|+|..|+..++||..|.++|++.+|.+.+---++.
T Consensus 18 ~Gdcpf~qr~~m~L~~k~~~f~vttVd~~~kp~~f~~~sp~-~~~P~l~~d~~~~tDs~~Ie~~Lee~l~~p~~~~~~~~ 96 (221)
T KOG1422|consen 18 LGDCPFCQRLFMTLELKGVPFKVTTVDLSRKPEWFLDISPG-GKPPVLKFDEKWVTDSDKIEEFLEEKLPPPKLPTLAPP 96 (221)
T ss_pred CCCChhHHHHHHHHHHcCCCceEEEeecCCCcHHHHhhCCC-CCCCeEEeCCceeccHHHHHHHHHHhcCCCCCcccCCH
Confidence 34799999999999999999999999999999999999998 89999999999999999999999999986543211122
Q ss_pred HHHHHHHHHHHhhhhhhhHhHHhhccchhhH-HHHHHHHHHHHHHHHHhcCC---CCcccCCCCChhHHHHHHHHHHHHh
Q 038634 90 QRAMARFWGKFIDEKALATRMKANFAEGKER-ELVTEEFFQQMKFLENELNG---KDFFGGETIGFVDIVAIVVAIWFPL 165 (222)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~le~~L~~---~~~l~G~~~t~aD~~l~~~l~~~~~ 165 (222)
|.+. +...++..+...+.+..+.. +.....+.+.|..||++|.. ++|+.||++|.|||.++|-|+.+++
T Consensus 97 E~as-------ag~diF~kF~~fi~ksk~~~n~~~e~~Ll~~L~~Ld~yL~sp~~~~Fl~Gd~lt~aDcsLlPKL~~i~v 169 (221)
T KOG1422|consen 97 ESAS-------AGSDIFAKFSAFIKKSKDAANDGLEKALLKELEKLDDYLKSPSRRKFLDGDKLTLADCSLLPKLHHIKV 169 (221)
T ss_pred HHHh-------hHHHHHHHHHHHHhCchhhccchHHHHHHHHHHHHHHHhcCccCCccccCCeeeeehhhhchhHHHHHH
Confidence 3222 22335555555555544433 44556788899999999975 8999999999999999999999986
Q ss_pred hhhh-hccccCCcCccchHHHHHHHHHccccccccCCChhhhHHHHHHHHh
Q 038634 166 TQEV-LGVETFTEEKFPVLFKWIRKITEIDVVNECRPPREKHLAYVKARIE 215 (222)
Q Consensus 166 ~~~~-~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 215 (222)
.... ..+++ .+.++++++|++.+.++.+|..+++...++...+.....
T Consensus 170 a~k~yk~~~I--P~~lt~V~rYl~~~ya~d~F~~tcp~d~ei~~~y~~~~~ 218 (221)
T KOG1422|consen 170 AAKHYKNFEI--PASLTGVWRYLKNAYARDEFTNTCPADQEIILAYAPVAK 218 (221)
T ss_pred HHHHhcCCCC--chhhhHHHHHHHHHHhHHHhhcCCchHHHHHHhhhhhhh
Confidence 6554 56777 689999999999999999999999999999988877554
No 23
>PLN02907 glutamate-tRNA ligase
Probab=99.91 E-value=1.2e-23 Score=183.45 Aligned_cols=158 Identities=20% Similarity=0.297 Sum_probs=130.9
Q ss_pred CCcceEEEeecCChHHHHHHHHHHHcCCCceEEeCCCCCCchhhhhhCCCCCcccEEE-eCCeeeeehHHHHHHHHhhcC
Q 038634 1 MAEEVKLYGTWSSPFSRRIELALKLKGVPFEYIEEDLSNKSPELLKYNPVHKKIPVLV-HNSKPIAESQVILEYIDEIWN 79 (222)
Q Consensus 1 M~~~~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~-~~g~~i~es~~I~~yL~~~~~ 79 (222)
|+ ++||+.+.++ +.++.++|++.|++|+.+.. +|. |+||+|+ ++|.+|+||.||++||++.++
T Consensus 1 ~~--~kLy~~~~S~-~~~v~~~L~~lgv~~e~~~~------------~p~-GkVPvLv~ddG~~L~ES~AIl~YLa~~~p 64 (722)
T PLN02907 1 ME--AKLSFPPDSP-PLAVIAAAKVAGVPLTIDPS------------LKS-GSAPTLLFSSGEKLTGTNVLLRYIARSAS 64 (722)
T ss_pred Ce--EEEEECCCCC-hHHHHHHHHHcCCCcEEeec------------CCC-CCCcEEEECCCCEEECHHHHHHHHHHhCC
Confidence 67 8999999884 77899999999999998651 577 8999999 588999999999999999998
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhhhhhhhHhHHhhccchhhHHHHHHHHHHHHHHHHHhcCCCCcccCCCCChhHHHHHHH
Q 038634 80 NNPILPQDPYQRAMARFWGKFIDEKALATRMKANFAEGKERELVTEEFFQQMKFLENELNGKDFFGGETIGFVDIVAIVV 159 (222)
Q Consensus 80 ~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~ 159 (222)
...|+|.++.+++++++|+.++.... . . ..+...++.||.+|++++||+|+++|+||+++++.
T Consensus 65 ~~~L~p~d~~erAqV~qWL~~~~~~~-~---------~-------~~l~~~L~~LE~~L~~rtYLvGd~lTLADIaL~~~ 127 (722)
T PLN02907 65 LPGFYGQDAFESSQVDEWLDYAPTFS-S---------G-------SEFENACEYVDGYLASRTFLVGYSLTIADIAIWSG 127 (722)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHhhcc-c---------H-------HHHHHHHHHHHHHhccCCeecCCCCCHHHHHHHHH
Confidence 88899999999999999999876421 0 0 13567789999999999999999999999999998
Q ss_pred HHHHHhhhhhhccccCCcCccchHHHHHHHHHcccc
Q 038634 160 AIWFPLTQEVLGVETFTEEKFPVLFKWIRKITEIDV 195 (222)
Q Consensus 160 l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~ 195 (222)
+........ +... ...||+|.+|+++|.++|+
T Consensus 128 L~~~~~~~~--~~~~--~~~yPnL~RW~erI~arPs 159 (722)
T PLN02907 128 LAGSGQRWE--SLRK--SKKYQNLVRWFNSISAEYS 159 (722)
T ss_pred HHhhhhhhh--cccc--cccCHHHHHHHHHHHhCCC
Confidence 765411111 1212 3789999999999999999
No 24
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=99.84 E-value=8.2e-21 Score=121.21 Aligned_cols=74 Identities=42% Similarity=0.781 Sum_probs=70.7
Q ss_pred EEeecCChHHHHHHHHHHHcCCCceEEeCCCCCCchhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHhhcCCC
Q 038634 7 LYGTWSSPFSRRIELALKLKGVPFEYIEEDLSNKSPELLKYNPVHKKIPVLVHNSKPIAESQVILEYIDEIWNNN 81 (222)
Q Consensus 7 Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~i~es~~I~~yL~~~~~~~ 81 (222)
||+++.||||+|+|++|+++||+|+.+.++..++.+++...||. |+||+|+++|.+++||.+|++||+++++++
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i~~~~~~v~~~~~~~~~~~~~p~-~~vPvL~~~g~~l~dS~~I~~yL~~~~~~~ 74 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGIPYELVPVDPEEKRPEFLKLNPK-GKVPVLVDDGEVLTDSAAIIEYLEERYPGP 74 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTEEEEEEEEBTTSTSHHHHHHSTT-SBSSEEEETTEEEESHHHHHHHHHHHSTSS
T ss_pred CCCcCCChHHHHHHHHHHHcCCeEEEeccCcccchhHHHhhccc-ccceEEEECCEEEeCHHHHHHHHHHHcCCC
Confidence 89999999999999999999999999999987788999999998 899999999999999999999999999864
No 25
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.82 E-value=7.4e-20 Score=116.23 Aligned_cols=73 Identities=34% Similarity=0.581 Sum_probs=69.1
Q ss_pred eEEEeecCChHHHHHHHHHHHcCCCceEEeCCCCCCchhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHhhc
Q 038634 5 VKLYGTWSSPFSRRIELALKLKGVPFEYIEEDLSNKSPELLKYNPVHKKIPVLVHNSKPIAESQVILEYIDEIW 78 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~i~es~~I~~yL~~~~ 78 (222)
|+||+.+.||+|++++++|+++|++|+.+.++..+..+++++.||. |++|+|+++|..++||.+|++||++++
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~-~~vP~l~~~~~~l~es~aI~~yL~~~~ 73 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGVSVEIIDVDPDNPPEDLAELNPY-GTVPTLVDRDLVLYESRIIMEYLDERF 73 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCccEEEEcCCCCCCHHHHhhCCC-CCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 6899999999999999999999999999999987778899999999 899999999999999999999999874
No 26
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=99.82 E-value=5.4e-20 Score=119.91 Aligned_cols=70 Identities=27% Similarity=0.425 Sum_probs=66.4
Q ss_pred cCChHHHHHHHHHHHcCCCceEEeCCCCCCchhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHhhcCCC
Q 038634 11 WSSPFSRRIELALKLKGVPFEYIEEDLSNKSPELLKYNPVHKKIPVLVHNSKPIAESQVILEYIDEIWNNN 81 (222)
Q Consensus 11 ~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~i~es~~I~~yL~~~~~~~ 81 (222)
..||||+|+|++|+++||+|+.+.+++.+++++|+++||. |+||+|+++|.+|+||.+|++||+++++.+
T Consensus 20 g~cpf~~rvrl~L~eKgi~ye~~~vd~~~~p~~~~~~nP~-g~vPvL~~~~~~i~eS~~I~eYLde~~~~~ 89 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGVVFNVTTVDMKRKPEDLKDLAPG-TQPPFLLYNGEVKTDNNKIEEFLEETLCPP 89 (91)
T ss_pred CCChhHHHHHHHHHHCCCceEEEEeCCCCCCHHHHHhCCC-CCCCEEEECCEEecCHHHHHHHHHHHccCC
Confidence 5799999999999999999999999998889999999998 899999999999999999999999998754
No 27
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=99.81 E-value=1.6e-19 Score=115.01 Aligned_cols=74 Identities=69% Similarity=1.168 Sum_probs=68.3
Q ss_pred eEEEeecCChHHHHHHHHHHHcCCCceEEeCCCCCCchhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHhhc
Q 038634 5 VKLYGTWSSPFSRRIELALKLKGVPFEYIEEDLSNKSPELLKYNPVHKKIPVLVHNSKPIAESQVILEYIDEIW 78 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~i~es~~I~~yL~~~~ 78 (222)
|+||+++.||+|++++++|+++|++|+.+.++...+++++++.||.+|++|+|+++|.+++||.+|++||++++
T Consensus 1 ~~Ly~~~~sp~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~p~~~~vP~l~~~~~~l~eS~aI~~yL~~~~ 74 (74)
T cd03058 1 VKLLGAWASPFVLRVRIALALKGVPYEYVEEDLGNKSELLLASNPVHKKIPVLLHNGKPICESLIIVEYIDEAW 74 (74)
T ss_pred CEEEECCCCchHHHHHHHHHHcCCCCEEEEeCcccCCHHHHHhCCCCCCCCEEEECCEEeehHHHHHHHHHhhC
Confidence 68999999999999999999999999999988777788999999942799999999999999999999999864
No 28
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.81 E-value=1e-19 Score=115.23 Aligned_cols=70 Identities=27% Similarity=0.517 Sum_probs=64.9
Q ss_pred eEEEeecCChHHHHHHHHHHHcCCCceEEeCCCC---CCchhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHH
Q 038634 5 VKLYGTWSSPFSRRIELALKLKGVPFEYIEEDLS---NKSPELLKYNPVHKKIPVLVHNSKPIAESQVILEYID 75 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~g~~i~es~~I~~yL~ 75 (222)
++||+++.||+|++++++|+++|++|+.+.++.. .++++|.++||. |+||+|+++|.+++||.+|++||+
T Consensus 1 ~~ly~~~~s~~s~rv~~~L~e~gl~~e~~~v~~~~~~~~~~~~~~inP~-g~vP~L~~~g~~l~Es~aI~~yLe 73 (73)
T cd03052 1 LVLYHWTQSFSSQKVRLVIAEKGLRCEEYDVSLPLSEHNEPWFMRLNPT-GEVPVLIHGDNIICDPTQIIDYLE 73 (73)
T ss_pred CEEecCCCCccHHHHHHHHHHcCCCCEEEEecCCcCccCCHHHHHhCcC-CCCCEEEECCEEEEcHHHHHHHhC
Confidence 4799999999999999999999999999998764 357889999999 899999999999999999999985
No 29
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.79 E-value=4.3e-19 Score=113.76 Aligned_cols=73 Identities=22% Similarity=0.284 Sum_probs=65.8
Q ss_pred eEEEeecCChHHHHHHHHHHHcCCCceEEeCCCCC-CchhhhhhCCCCCcccEEEe--CCeeeeehHHHHHHHHhhc
Q 038634 5 VKLYGTWSSPFSRRIELALKLKGVPFEYIEEDLSN-KSPELLKYNPVHKKIPVLVH--NSKPIAESQVILEYIDEIW 78 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~g~vP~L~~--~g~~i~es~~I~~yL~~~~ 78 (222)
++||+++.||+|++++++|.++||+|+.+.++... ..+++++.||. |+||+|++ +|.+++||.+|++||+++|
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi~y~~~~v~~~~~~~~~~~~~~p~-~~vP~l~~~~~~~~l~es~~I~~yL~~~~ 77 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELELDVILYPCPKGSPKRDKFLEKGGK-VQVPYLVDPNTGVQMFESADIVKYLFKTY 77 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHhCCC-CcccEEEeCCCCeEEEcHHHHHHHHHHhC
Confidence 69999999999999999999999999999886543 46789999998 89999996 4689999999999999874
No 30
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=99.79 E-value=3.5e-19 Score=113.01 Aligned_cols=72 Identities=15% Similarity=0.108 Sum_probs=66.5
Q ss_pred ceEEEeecCChHHHHHHHHHHHcCCCceEEeCCCCCCchhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHh
Q 038634 4 EVKLYGTWSSPFSRRIELALKLKGVPFEYIEEDLSNKSPELLKYNPVHKKIPVLVHNSKPIAESQVILEYIDE 76 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~i~es~~I~~yL~~ 76 (222)
.++||+++.|++|+++|++|+++|++|+.+.++..+..++++.+||. |++|+|+++|.+++||.+|++||++
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~L~~~~i~~e~~~v~~~~~~~~~~~~~p~-~~vP~l~~~~~~l~es~aI~~yL~~ 72 (73)
T cd03076 1 PYTLTYFPVRGRAEAIRLLLADQGISWEEERVTYEEWQESLKPKMLF-GQLPCFKDGDLTLVQSNAILRHLGR 72 (73)
T ss_pred CcEEEEeCCcchHHHHHHHHHHcCCCCEEEEecHHHhhhhhhccCCC-CCCCEEEECCEEEEcHHHHHHHHhc
Confidence 37999999999999999999999999999999875556689999999 8999999999999999999999976
No 31
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=99.79 E-value=6.9e-19 Score=111.10 Aligned_cols=68 Identities=35% Similarity=0.534 Sum_probs=64.2
Q ss_pred EEEeecCChHHHHHHHHHHHcCCCceEEeCCCCCCchhhhhhCCCCCcccEEEeC-CeeeeehHHHHHHH
Q 038634 6 KLYGTWSSPFSRRIELALKLKGVPFEYIEEDLSNKSPELLKYNPVHKKIPVLVHN-SKPIAESQVILEYI 74 (222)
Q Consensus 6 ~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~-g~~i~es~~I~~yL 74 (222)
+||+++.||+|+|++++|+++|++|+.+.++..+..++++++||. |+||+|+++ |.+|+||.+|++|+
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl~~e~~~v~~~~~~~~~~~~np~-~~vP~L~~~~g~~l~eS~aI~~y~ 70 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGITVELREVELKNKPAEMLAASPK-GTVPVLVLGNGTVIEESLDIMRWA 70 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCCCcEEEEeCCCCCCHHHHHHCCC-CCCCEEEECCCcEEecHHHHHHhh
Confidence 799999999999999999999999999999987777899999998 899999975 89999999999996
No 32
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=99.79 E-value=7.1e-19 Score=111.98 Aligned_cols=71 Identities=37% Similarity=0.493 Sum_probs=65.6
Q ss_pred eEEEeecCChHHHHHHHHHHHcCCCceEEeCCCCC---CchhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHh
Q 038634 5 VKLYGTWSSPFSRRIELALKLKGVPFEYIEEDLSN---KSPELLKYNPVHKKIPVLVHNSKPIAESQVILEYIDE 76 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~---~~~~~~~~~p~~g~vP~L~~~g~~i~es~~I~~yL~~ 76 (222)
|+||+++.||+|++++++|+++|++|+.+.++... ..+++.+.||. |++|+|+++|.+++||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~i~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~l~es~aI~~yL~~ 74 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGLELNLKEVNLMKGEHLKPEFLKLNPQ-HTVPTLVDNGFVLWESHAILIYLVE 74 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCCCCEEEEecCccCCcCCHHHHhhCcC-CCCCEEEECCEEEEcHHHHHHHHhC
Confidence 68999999999999999999999999999988642 56899999999 8999999999999999999999974
No 33
>KOG4244 consensus Failed axon connections (fax) protein/glutathione S-transferase-like protein [Signal transduction mechanisms]
Probab=99.78 E-value=5.4e-18 Score=127.94 Aligned_cols=177 Identities=21% Similarity=0.295 Sum_probs=127.0
Q ss_pred eEEEeec-------CChHHHHHHHHHHHcCCCceEEeCCCCCCchhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHhh
Q 038634 5 VKLYGTW-------SSPFSRRIELALKLKGVPFEYIEEDLSNKSPELLKYNPVHKKIPVLVHNSKPIAESQVILEYIDEI 77 (222)
Q Consensus 5 ~~Ly~~~-------~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~i~es~~I~~yL~~~ 77 (222)
+-||.++ .||||.++...|+..+|||+.+..... ..++. |++|.++-||+-|.||..|..+|.++
T Consensus 46 VYLyQF~R~~~~PnLSPfClKvEt~lR~~~IpYE~~~~~~~-------~rSr~-G~lPFIELNGe~iaDS~~I~~~L~~h 117 (281)
T KOG4244|consen 46 VYLYQFPRTKTCPNLSPFCLKVETFLRAYDIPYEIVDCSLK-------RRSRN-GTLPFIELNGEHIADSDLIEDRLRKH 117 (281)
T ss_pred EEEEeccccCCCCCCChHHHHHHHHHHHhCCCceeccccce-------eeccC-CCcceEEeCCeeccccHHHHHHHHHH
Confidence 4566655 789999999999999999999876542 23455 89999999999999999999999999
Q ss_pred cCCCCCCCCCHHHHHHHHHHHHHhhhhhhhHhH----------------------------Hhh----ccc---------
Q 038634 78 WNNNPILPQDPYQRAMARFWGKFIDEKALATRM----------------------------KAN----FAE--------- 116 (222)
Q Consensus 78 ~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------~~~----~~~--------- 116 (222)
+.-+..+ .+.+++....+...++..+...+. ..+ +..
T Consensus 118 f~~~~~L--~~e~~a~s~Al~rm~dnhL~~~l~y~k~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~f~~kv~~r~~g~ 195 (281)
T KOG4244|consen 118 FKIPDDL--SAEQRAQSRALSRMADNHLFWILLYYKGADDAWLNTDRKLIGLPGFLFPLLLPLFWKAIFGKKVYKRSTGA 195 (281)
T ss_pred cCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9754423 344555555544444432322111 111 000
Q ss_pred --hhhHHHHHHHHHHHHHHHHHhcCCCCcccCCCCChhHHHHHHHHHHHHhhhhhhcc-ccCCcCccchHHHHHHHHHcc
Q 038634 117 --GKERELVTEEFFQQMKFLENELNGKDFFGGETIGFVDIVAIVVAIWFPLTQEVLGV-ETFTEEKFPVLFKWIRKITEI 193 (222)
Q Consensus 117 --~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~-~~~~~~~~p~l~~~~~~~~~~ 193 (222)
.=..++..+-+.+-|..++..|++++||+|+++|-+|+++|+.|..+.+. ..... +.+ .+++|+|..|++||++.
T Consensus 196 IG~f~~~Ei~ell~rDlr~i~~~Lg~KkflfGdkit~~DatvFgqLa~v~YP-~~~~i~d~l-e~d~p~l~eYceRIr~~ 273 (281)
T KOG4244|consen 196 IGDFESAEIDELLHRDLRAISDYLGDKKFLFGDKITPADATVFGQLAQVYYP-FRSHISDLL-EGDFPNLLEYCERIRKE 273 (281)
T ss_pred ccCcCHHHHHHHHHHHHHHHHHHhCCCccccCCCCCcceeeehhhhhheecc-CCCcHHHHH-hhhchHHHHHHHHHHHH
Confidence 01223455667888999999999999999999999999999998887652 11111 223 58899999999999983
No 34
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=99.78 E-value=1.2e-18 Score=111.46 Aligned_cols=72 Identities=42% Similarity=0.616 Sum_probs=66.4
Q ss_pred eEEEeecCChHHHHHHHHHHHcCCCceEEeCCCC---CCchhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHhh
Q 038634 5 VKLYGTWSSPFSRRIELALKLKGVPFEYIEEDLS---NKSPELLKYNPVHKKIPVLVHNSKPIAESQVILEYIDEI 77 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~g~~i~es~~I~~yL~~~ 77 (222)
++||+.+.||+|++++++|+++|++|+.+.++.. ..++++.++||. |++|+|+++|.+++||.+|++||+++
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~P~-~~vP~l~~~g~~l~es~aI~~yL~~~ 76 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGVDYELVPVDLTKGEHKSPEHLARNPF-GQIPALEDGDLKLFESRAITRYLAEK 76 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCCCcEEEEeCccccccCCHHHHhhCCC-CCCCEEEECCEEEEcHHHHHHHHhhC
Confidence 7999999999999999999999999999988764 356789999998 89999999999999999999999863
No 35
>cd03185 GST_C_Tau GST_C family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropi
Probab=99.78 E-value=8.3e-18 Score=118.14 Aligned_cols=123 Identities=45% Similarity=0.769 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHhhhhhhhHhHHhhccchhhHHHHHHHHHHHHHHHHHhcCCCCcccCCCCChhHHHHHHHHHHHHhhhh
Q 038634 89 YQRAMARFWGKFIDEKALATRMKANFAEGKERELVTEEFFQQMKFLENELNGKDFFGGETIGFVDIVAIVVAIWFPLTQE 168 (222)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~ 168 (222)
.+++++.+|+.++++.+.+.+...+...+...+.....+.+.++.||++|++++|++|+++|+|||++++.+.++.....
T Consensus 2 ~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~ADi~l~~~~~~~~~~~~ 81 (126)
T cd03185 2 YERAVARFWAAFIDDKLFPAGRKVLAAKGEEREKAKEEALEALKVLEEELGGKPFFGGDTIGYVDIALGSFLGWFRAYEE 81 (126)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHHHHHHHHH
Confidence 36889999999999888877766555444455567788999999999999989999999999999999999988764433
Q ss_pred hhccccCCcCccchHHHHHHHHHccccccccCCChhhhHHHHH
Q 038634 169 VLGVETFTEEKFPVLFKWIRKITEIDVVNECRPPREKHLAYVK 211 (222)
Q Consensus 169 ~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 211 (222)
..+.+..+.+++|++.+|+++|.++|+++++++..+...++++
T Consensus 82 ~~~~~~~~~~~~p~l~~w~~~~~~~p~~~~~~~~~~~~~~~~~ 124 (126)
T cd03185 82 VGGVKLLDEEKTPLLAAWAERFLELEAVKEVLPDRDKLVEFAK 124 (126)
T ss_pred HcCccccCcccCchHHHHHHHHHhccHHHHhCCCHHHHHHHHH
Confidence 3343322237799999999999999999999999877766554
No 36
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=99.77 E-value=2.4e-18 Score=110.06 Aligned_cols=73 Identities=38% Similarity=0.560 Sum_probs=66.8
Q ss_pred eEEEeecCChHHHHHHHHHHHcCCCceEEeCCCCC---CchhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHhhc
Q 038634 5 VKLYGTWSSPFSRRIELALKLKGVPFEYIEEDLSN---KSPELLKYNPVHKKIPVLVHNSKPIAESQVILEYIDEIW 78 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~---~~~~~~~~~p~~g~vP~L~~~g~~i~es~~I~~yL~~~~ 78 (222)
++||+++.|+++++++++|+++|++|+.+.++..+ ..+++.+.||. |++|+|+++|.+|+||.+|++||++++
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~~~~~~~v~~~~~~~~~~~~~~~~p~-~~vP~L~~~~~~l~eS~aI~~Yl~~~~ 76 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKIPFEECPIDLRKGEQLTPEFKKINPF-GKVPAIVDGDFTLAESVAILRYLARKF 76 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCCCcEEEEecCCCCCcCCHHHHHhCcC-CCCCEEEECCEEEEcHHHHHHHHHhhC
Confidence 58999999999999999999999999999988643 45789999999 899999999999999999999999864
No 37
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=99.76 E-value=2.5e-17 Score=125.07 Aligned_cols=182 Identities=16% Similarity=0.329 Sum_probs=120.0
Q ss_pred ceEEEeecCChHHHHHHHHHHHcCCCceEEeCCCCCCchhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHhhcCCC--
Q 038634 4 EVKLYGTWSSPFSRRIELALKLKGVPFEYIEEDLSNKSPELLKYNPVHKKIPVLVHNSKPIAESQVILEYIDEIWNNN-- 81 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~i~es~~I~~yL~~~~~~~-- 81 (222)
+++||.+..||||.+||.+|.+.||+|++++|++-.+++ ++.+.. ++||+|...|+.+.||.+|+.-|+.....+
T Consensus 90 ~l~LyQyetCPFCcKVrAFLDyhgisY~VVEVnpV~r~e--Ik~Ssy-kKVPil~~~Geqm~dSsvIIs~laTyLq~~~q 166 (370)
T KOG3029|consen 90 DLVLYQYETCPFCCKVRAFLDYHGISYAVVEVNPVLRQE--IKWSSY-KKVPILLIRGEQMVDSSVIISLLATYLQDKRQ 166 (370)
T ss_pred eEEEEeeccCchHHHHHHHHhhcCCceEEEEecchhhhh--cccccc-ccccEEEeccceechhHHHHHHHHHHhccCCC
Confidence 589999999999999999999999999999998654222 233444 899999987878999999988875533110
Q ss_pred ------CCCCC-------------------------C----HHHHHHHHHHHHHhhhhhhhHhHHhhc------------
Q 038634 82 ------PILPQ-------------------------D----PYQRAMARFWGKFIDEKALATRMKANF------------ 114 (222)
Q Consensus 82 ------~l~p~-------------------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 114 (222)
.++|. + -+....-..|-+|+++.+...+.+..+
T Consensus 167 ~l~eiiq~yPa~~~~ne~GK~v~~~~NKyflM~~e~d~~~~ke~~~eerkWR~WvDn~lVHLiSPNvYrn~~EsletFew 246 (370)
T KOG3029|consen 167 DLGEIIQMYPATSFFNEDGKEVNDILNKYFLMYREHDPGVSKETDEEERKWRSWVDNHLVHLISPNVYRNMGESLETFEW 246 (370)
T ss_pred CHHHHHHhccccccccccccchhhcchhheeeeeccCCCccccchHHHhHHHHHHhhhhhhhcCcccccChhhHHHHHHH
Confidence 12331 0 011223335555655544433332111
Q ss_pred ----------------------------------cchhhHHHHHHHHHHHHHHHHHhc-CCCCcccCCCCChhHHHHHHH
Q 038634 115 ----------------------------------AEGKERELVTEEFFQQMKFLENEL-NGKDFFGGETIGFVDIVAIVV 159 (222)
Q Consensus 115 ----------------------------------~~~~~~~~~~~~~~~~l~~le~~L-~~~~~l~G~~~t~aD~~l~~~ 159 (222)
..+-+..+..+.+.+..+.+-..| .+++|++|++|++||+.+|++
T Consensus 247 f~q~G~w~~~FpawEr~lavY~GAtAM~lisK~LKkkhni~D~Re~lydA~d~Wvaalgknr~flGG~kPnLaDLsvfGv 326 (370)
T KOG3029|consen 247 FSQAGEWDVHFPAWERDLAVYCGATAMYLISKMLKKKHNISDEREHLYDAADQWVAALGKNRPFLGGKKPNLADLSVFGV 326 (370)
T ss_pred HHHcCCccccCchHHHHHHHHhhHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHhCCCCCccCCCCCchhhhhhhhh
Confidence 000011112333444444444444 458999999999999999999
Q ss_pred HHHHHhhhhhhccccCCcCccchHHHHHHHHHcc
Q 038634 160 AIWFPLTQEVLGVETFTEEKFPVLFKWIRKITEI 193 (222)
Q Consensus 160 l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~ 193 (222)
+..++.+...... -+..++..|+.+|.+.
T Consensus 327 l~sm~gc~afkd~-----~q~t~I~eW~~rmeal 355 (370)
T KOG3029|consen 327 LRSMEGCQAFKDC-----LQNTSIGEWYYRMEAL 355 (370)
T ss_pred hhHhhhhhHHHHH-----HhcchHHHHHHHHHHH
Confidence 9999877665332 3468999999999873
No 38
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=99.76 E-value=4.4e-18 Score=110.22 Aligned_cols=73 Identities=34% Similarity=0.602 Sum_probs=66.9
Q ss_pred eEEEeecCChHHHHHHHHHHHcCCCceEEeCCCC---CCchhhhhhCCCCCcccEEEeC---CeeeeehHHHHHHHHhhc
Q 038634 5 VKLYGTWSSPFSRRIELALKLKGVPFEYIEEDLS---NKSPELLKYNPVHKKIPVLVHN---SKPIAESQVILEYIDEIW 78 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~---g~~i~es~~I~~yL~~~~ 78 (222)
++||+++. |+|++++++|+++|++|+.+.++.. ..+++|.++||. |+||+|+++ |.+|+||.+|++||++++
T Consensus 2 ~~Ly~~~~-~~~~~v~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~g~~l~eS~aI~~yL~~~~ 79 (81)
T cd03048 2 ITLYTHGT-PNGFKVSIMLEELGLPYEIHPVDISKGEQKKPEFLKINPN-GRIPAIVDHNGTPLTVFESGAILLYLAEKY 79 (81)
T ss_pred eEEEeCCC-CChHHHHHHHHHcCCCcEEEEecCcCCcccCHHHHHhCcC-CCCCEEEeCCCCceEEEcHHHHHHHHHHHh
Confidence 69999986 9999999999999999999998854 467899999999 899999987 899999999999999988
Q ss_pred C
Q 038634 79 N 79 (222)
Q Consensus 79 ~ 79 (222)
+
T Consensus 80 ~ 80 (81)
T cd03048 80 D 80 (81)
T ss_pred C
Confidence 6
No 39
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=99.76 E-value=2.3e-18 Score=109.00 Aligned_cols=71 Identities=25% Similarity=0.292 Sum_probs=64.0
Q ss_pred eEEEeecCChHHHHHHHHHHHcCCCceEEeCCCCC-CchhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHh
Q 038634 5 VKLYGTWSSPFSRRIELALKLKGVPFEYIEEDLSN-KSPELLKYNPVHKKIPVLVHNSKPIAESQVILEYIDE 76 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~g~vP~L~~~g~~i~es~~I~~yL~~ 76 (222)
++||+++.|++|+++|++|+++|++|+.+.++... ..+++..+||. |++|+|+++|.+|+||.+|++||++
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~~~~~~~~~~~~~~~~p~-~~vP~L~~~~~~l~es~aI~~yL~~ 72 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGVEYEDVRITYEEWPELDLKPTLPF-GQLPVLEIDGKKLTQSNAILRYLAR 72 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCCCcEEEEeCHHHhhhhhhccCCcC-CCCCEEEECCEEEEecHHHHHHhhC
Confidence 58999999999999999999999999999988653 33458899999 8999999999999999999999974
No 40
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=99.76 E-value=4.5e-18 Score=112.06 Aligned_cols=72 Identities=35% Similarity=0.571 Sum_probs=66.9
Q ss_pred cceEEEeecCChHHHHHHHHHHHcCCCceEEeCCCCCCchhhhhhCCCCCcccEEEeC-CeeeeehHHHHHHHH
Q 038634 3 EEVKLYGTWSSPFSRRIELALKLKGVPFEYIEEDLSNKSPELLKYNPVHKKIPVLVHN-SKPIAESQVILEYID 75 (222)
Q Consensus 3 ~~~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~-g~~i~es~~I~~yL~ 75 (222)
..++||+++.||+|++++++|+++|++|+.+.++....++++.+.||. |++|+|+++ |.+++||.+|++||+
T Consensus 17 ~~~~Ly~~~~sp~~~kv~~~L~~~gl~~~~~~v~~~~~~~~~~~~np~-~~vPvL~~~~g~~l~eS~aI~~yLe 89 (89)
T cd03055 17 GIIRLYSMRFCPYAQRARLVLAAKNIPHEVININLKDKPDWFLEKNPQ-GKVPALEIDEGKVVYESLIICEYLD 89 (89)
T ss_pred CcEEEEeCCCCchHHHHHHHHHHcCCCCeEEEeCCCCCcHHHHhhCCC-CCcCEEEECCCCEEECHHHHHHhhC
Confidence 579999999999999999999999999999999877666789999998 899999976 899999999999985
No 41
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=99.76 E-value=4.4e-18 Score=108.55 Aligned_cols=70 Identities=31% Similarity=0.423 Sum_probs=65.1
Q ss_pred EEEeecCChHHHHHHHHHHHcCCCceEEeCCCC--CCchhhhhhCCCCCcccEEEe-CCeeeeehHHHHHHHHh
Q 038634 6 KLYGTWSSPFSRRIELALKLKGVPFEYIEEDLS--NKSPELLKYNPVHKKIPVLVH-NSKPIAESQVILEYIDE 76 (222)
Q Consensus 6 ~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~--~~~~~~~~~~p~~g~vP~L~~-~g~~i~es~~I~~yL~~ 76 (222)
+||+++.||++++++++|+++|++|+.+.++.. .++++|+++||. |++|+|++ +|.+|+||.+|++||++
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi~~~~~~v~~~~~~~~~~~~~~nP~-~~vP~L~~~~g~~l~es~aI~~yL~~ 74 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGLDVEIVDFQPGKENKTPEFLKKFPL-GKVPAFEGADGFCLFESNAIAYYVAN 74 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCCceEEEecccccccCCHHHHHhCCC-CCCCEEEcCCCCEEeeHHHHHHHHhh
Confidence 799999999999999999999999999999875 467899999999 89999996 58999999999999976
No 42
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.76 E-value=4.6e-18 Score=107.89 Aligned_cols=70 Identities=39% Similarity=0.673 Sum_probs=64.7
Q ss_pred eEEEeecCChHHHHHHHHHHHcCCCceEEeCCCC---CCchhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHH
Q 038634 5 VKLYGTWSSPFSRRIELALKLKGVPFEYIEEDLS---NKSPELLKYNPVHKKIPVLVHNSKPIAESQVILEYID 75 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~g~~i~es~~I~~yL~ 75 (222)
++||+++.||+|++++++|+++|++|+.+.++.. ..++++.+.||. |++|+|+++|.+++||.+|++||+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~i~es~aI~~yl~ 73 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGIPYEWVEVDILKGETRTPEFLALNPN-GEVPVLELDGRVLAESNAILVYLA 73 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEecCCCcccCCHHHHHhCCC-CCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999999998764 367889999998 899999999999999999999984
No 43
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=6.8e-18 Score=127.91 Aligned_cols=205 Identities=18% Similarity=0.262 Sum_probs=147.2
Q ss_pred cceEEEeecCChHHHHHHHHHHHcCCC--ceEEeCCC--CCCchhh----------------------hhhCCCC---Cc
Q 038634 3 EEVKLYGTWSSPFSRRIELALKLKGVP--FEYIEEDL--SNKSPEL----------------------LKYNPVH---KK 53 (222)
Q Consensus 3 ~~~~Ly~~~~sp~~~~v~~~l~~~gi~--~~~~~v~~--~~~~~~~----------------------~~~~p~~---g~ 53 (222)
+++.||..-.|||++|..++=+++|++ ..+..+.+ .+....| ..-.|.+ -+
T Consensus 50 GRYhLYvslaCPWAHRTLI~R~LkgLE~~Isvsvv~~~m~~~GW~F~~~~~g~t~dpl~g~~~L~~~Y~~adP~YsgRvT 129 (324)
T COG0435 50 GRYHLYVSLACPWAHRTLIFRALKGLEPVISVSVVHPLMDENGWTFDPEFPGATGDPLYGIERLSQLYTRADPDYSGRVT 129 (324)
T ss_pred CeEEEEEEecCchHHHHHHHHHHhcccccceEEEecccccCCCceEcCCCCCCCCCcccchhHHHHHHhhcCCCCCCcee
Confidence 478999999999999999999999986 11112221 1111111 1112221 26
Q ss_pred ccEEEeCC---eeeeehHHHHHHHHhhcC-----CCCCCCCCHHHHHHHHHHHHHhhhhhhhHhHHhhcc-chhhHHHHH
Q 038634 54 IPVLVHNS---KPIAESQVILEYIDEIWN-----NNPILPQDPYQRAMARFWGKFIDEKALATRMKANFA-EGKERELVT 124 (222)
Q Consensus 54 vP~L~~~g---~~i~es~~I~~yL~~~~~-----~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 124 (222)
||||.|.. .+=.||..|++.+...|. ...++|.. -+.+++.+.+++-..+..-+...-+. .++..+++.
T Consensus 130 VPVLwDk~~~tIVnNES~eIirm~N~aFde~~~~~~dlyP~~--Lr~eId~~n~~Iy~~vNNGVYk~GFA~tq~aYeea~ 207 (324)
T COG0435 130 VPVLWDKKTQTIVNNESAEIIRMFNSAFDEFGASAVDLYPEA--LRTEIDELNKWIYDTVNNGVYKAGFATTQEAYEEAV 207 (324)
T ss_pred EEEEEecCCCeeecCCcHHHHHHHHHHHHHHhhhccccCCHH--HHHHHHHHHhhhcccccCceeeecccchHHHHHHHH
Confidence 99999743 456799999999998763 24578765 47788888888777666555544443 677888999
Q ss_pred HHHHHHHHHHHHhcCCCCcccCCCCChhHHHHHHHHHHHHhhh-hhhccccCCcCccchHHHHHHHHHccccccccCCCh
Q 038634 125 EEFFQQMKFLENELNGKDFFGGETIGFVDIVAIVVAIWFPLTQ-EVLGVETFTEEKFPVLFKWIRKITEIDVVNECRPPR 203 (222)
Q Consensus 125 ~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~-~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~ 203 (222)
..+.+.|+.||..|+++.||+||++|-||+-+|+.|.++.... ...+.+.-.-..||+|..|.+.+-+.|.|++++.=.
T Consensus 208 ~~lF~~Ld~lE~~L~~~ryl~Gd~lTEAD~RLftTlvRFD~VYvgHFKCN~~rI~dypnL~~yLr~LYq~pg~~~T~df~ 287 (324)
T COG0435 208 KKLFEALDKLEQILSERRYLTGDQLTEADIRLFTTLVRFDPVYVGHFKCNLRRIRDYPNLWGYLRDLYQLPGFAETVDFD 287 (324)
T ss_pred HHHHHHHHHHHHHhhcCeeeccccchHhhhhhhheeEeecceEEeeeecccchhhcCchHHHHHHHHhcCcccccccchh
Confidence 9999999999999999999999999999999999988873211 111233222256999999999999999999886544
Q ss_pred hhhHHH
Q 038634 204 EKHLAY 209 (222)
Q Consensus 204 ~~~~~~ 209 (222)
.-..++
T Consensus 288 hIK~hY 293 (324)
T COG0435 288 HIKLHY 293 (324)
T ss_pred Hhhhhh
Confidence 333333
No 44
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=99.75 E-value=5.8e-18 Score=106.87 Aligned_cols=70 Identities=29% Similarity=0.423 Sum_probs=61.3
Q ss_pred eEEEeecCChHHHHHHHHHHHcCCCceEEeCCCCCCchhhhhhCCCCCcccEEEeC-CeeeeehHHHHHHHHh
Q 038634 5 VKLYGTWSSPFSRRIELALKLKGVPFEYIEEDLSNKSPELLKYNPVHKKIPVLVHN-SKPIAESQVILEYIDE 76 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~-g~~i~es~~I~~yL~~ 76 (222)
|+||+++.||+|+|+|++|+++|++|+.+.++... .....+.+|. |++|+|+++ |.+++||.+|++||++
T Consensus 1 ~~Ly~~~~~p~~~rvr~~L~~~gl~~~~~~~~~~~-~~~~~~~~~~-~~vP~L~~~~~~~l~es~aI~~yL~~ 71 (71)
T cd03037 1 MKLYIYEHCPFCVKARMIAGLKNIPVEQIILQNDD-EATPIRMIGA-KQVPILEKDDGSFMAESLDIVAFIDE 71 (71)
T ss_pred CceEecCCCcHhHHHHHHHHHcCCCeEEEECCCCc-hHHHHHhcCC-CccCEEEeCCCeEeehHHHHHHHHhC
Confidence 68999999999999999999999999999887543 2344678998 899999975 8999999999999974
No 45
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.75 E-value=5.6e-18 Score=107.52 Aligned_cols=70 Identities=33% Similarity=0.509 Sum_probs=65.1
Q ss_pred eEEEeecCChHHHHHHHHHHH--cCCCceEEeCCCCCCchhhhhhCCCCCcccEEE-eCCeeeeehHHHHHHHH
Q 038634 5 VKLYGTWSSPFSRRIELALKL--KGVPFEYIEEDLSNKSPELLKYNPVHKKIPVLV-HNSKPIAESQVILEYID 75 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~--~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~-~~g~~i~es~~I~~yL~ 75 (222)
|+||+++.||+|+++|++|++ +|++|+.+.++...+.+++++.||. |++|+|+ ++|..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~p~-~~vP~l~~~~g~~l~es~aI~~yLe 73 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGLGDDVELVLVNPWSDDESLLAVNPL-GKIPALVLDDGEALFDSRVICEYLD 73 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCCCCCcEEEEcCcccCChHHHHhCCC-CCCCEEEECCCCEEECHHHHHhhhC
Confidence 589999999999999999999 8999999999877778899999998 8999998 57899999999999985
No 46
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=2.8e-17 Score=116.66 Aligned_cols=178 Identities=16% Similarity=0.211 Sum_probs=125.2
Q ss_pred eEEEeecCChHHHHHHHHHHHcCCCceEEeCCCCCCchhhhhhCCCCCcccEEE-eCCeeeeehHHHHHHHHhhcCCCCC
Q 038634 5 VKLYGTWSSPFSRRIELALKLKGVPFEYIEEDLSNKSPELLKYNPVHKKIPVLV-HNSKPIAESQVILEYIDEIWNNNPI 83 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~-~~g~~i~es~~I~~yL~~~~~~~~l 83 (222)
|+||-+..||||-|+|+++..+|||++.+....++......-+. . ++||+|+ ++|..+.||..|+.|+++..+.+-+
T Consensus 1 MkLYIYdHCPfcvrarmi~Gl~nipve~~vL~nDDe~Tp~rmiG-~-KqVPiL~Kedg~~m~ESlDIV~y~d~~~~~~~l 78 (215)
T COG2999 1 MKLYIYDHCPFCVRARMIFGLKNIPVELHVLLNDDEETPIRMIG-Q-KQVPILQKEDGRAMPESLDIVHYVDELDGKPLL 78 (215)
T ss_pred CceeEeccChHHHHHHHHhhccCCChhhheeccCcccChhhhhc-c-cccceEEccccccchhhhHHHHHHHHhcCchhh
Confidence 68999999999999999999999999998876554332223333 3 6899999 7899999999999999999886544
Q ss_pred CCCCHHHHHHHHHHHHHhhhhhhhHhHHhh-----------------ccchh-----------hHHHHHHHHHHHHHHHH
Q 038634 84 LPQDPYQRAMARFWGKFIDEKALATRMKAN-----------------FAEGK-----------ERELVTEEFFQQMKFLE 135 (222)
Q Consensus 84 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~-----------~~~~~~~~~~~~l~~le 135 (222)
..+ .+-.+..|+..+.......+.+.+ ...++ .......++...|+.|+
T Consensus 79 t~~---~~pai~~wlrkv~~y~nkll~PR~~k~~l~EF~T~sA~~yf~~KKe~s~g~F~~~l~~t~~~~~~i~~dl~~l~ 155 (215)
T COG2999 79 TGK---VRPAIEAWLRKVNGYLNKLLLPRFAKSALPEFATPSARKYFTDKKEASEGSFESLLNHTAQYLKRIQADLRALD 155 (215)
T ss_pred ccC---cCHHHHHHHHHhcchHhhhhhhhHhhcCCccccCHHHHHHHHhhhhhccccHHHHHhchHHHHHHHHHHHHHHH
Confidence 322 233344555544443332222222 11111 11344677888999999
Q ss_pred HhcCCCCcccCCCCChhHHHHHHHHHHHHhhhhhhccccCCcCccchHHHHHHHHHccccc
Q 038634 136 NELNGKDFFGGETIGFVDIVAIVVAIWFPLTQEVLGVETFTEEKFPVLFKWIRKITEIDVV 196 (222)
Q Consensus 136 ~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 196 (222)
..+.+..-+- ..+|.-|+.+||+++.+ ..+.|..+ -.++..|..+|.+...+
T Consensus 156 ~Li~~~s~~n-~~l~~ddi~vFplLRnl---t~v~gi~w-----ps~v~dy~~~msektqV 207 (215)
T COG2999 156 KLIVGPSAVN-GELSEDDILVFPLLRNL---TLVAGIQW-----PSRVADYRDNMSEKTQV 207 (215)
T ss_pred HHhcCcchhc-cccchhhhhhhHHhccc---eecccCCC-----cHHHHHHHHHHHHhhCc
Confidence 9887755333 46999999999999888 45556665 46899999999986554
No 47
>cd03047 GST_N_2 GST_N family, unknown subfamily 2; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The sequence from Burkholderia cepacia was identified as part of a gene cluster involved in the degradation of 2,4,5-trichlorophenoxyacetic acid. Some GSTs (e.g. Class Zeta and Delta) are known to catalyze dechlorination reactions.
Probab=99.75 E-value=7.6e-18 Score=106.90 Aligned_cols=70 Identities=30% Similarity=0.488 Sum_probs=64.1
Q ss_pred eEEEeecCChHHHHHHHHHHHcCCCceEEeCCCC---CCchhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHH
Q 038634 5 VKLYGTWSSPFSRRIELALKLKGVPFEYIEEDLS---NKSPELLKYNPVHKKIPVLVHNSKPIAESQVILEYID 75 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~g~~i~es~~I~~yL~ 75 (222)
|+||+++.||++++++++|+++|++|+.+.++.. ...++++++||. |++|+|+++|.+|+||.+|++||+
T Consensus 1 ~~l~~~~~s~~~~~v~~~L~~~~l~~~~~~~~~~~~~~~~~~~~~~nP~-~~vP~L~~~~~~l~eS~aI~~YL~ 73 (73)
T cd03047 1 LTIWGRRSSINVQKVLWLLDELGLPYERIDAGGQFGGLDTPEFLAMNPN-GRVPVLEDGDFVLWESNAILRYLA 73 (73)
T ss_pred CEEEecCCCcchHHHHHHHHHcCCCCEEEEeccccccccCHHHHhhCCC-CCCCEEEECCEEEECHHHHHHHhC
Confidence 5899999999999999999999999999988753 356889999999 899999999999999999999984
No 48
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=99.74 E-value=1.1e-17 Score=107.00 Aligned_cols=73 Identities=34% Similarity=0.509 Sum_probs=66.2
Q ss_pred eEEEeecCChHHHHHHHHHHHcCCCceEEeCCCC---CCchhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHhhcC
Q 038634 5 VKLYGTWSSPFSRRIELALKLKGVPFEYIEEDLS---NKSPELLKYNPVHKKIPVLVHNSKPIAESQVILEYIDEIWN 79 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~g~~i~es~~I~~yL~~~~~ 79 (222)
|+||+++. +++++++++|+++|++|+.+.++.. .+.+++.+.||. +++|+|+++|.+|+||.+|++||++++|
T Consensus 1 ~~l~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~-~~vP~l~~~g~~l~es~aI~~yL~~~~~ 76 (76)
T cd03046 1 ITLYHLPR-SRSFRILWLLEELGLPYELVLYDRGPGEQAPPEYLAINPL-GKVPVLVDGDLVLTESAAIILYLAEKYG 76 (76)
T ss_pred CEEEeCCC-CChHHHHHHHHHcCCCcEEEEeCCCCCccCCHHHHhcCCC-CCCCEEEECCEEEEcHHHHHHHHHHhCc
Confidence 58999886 5899999999999999999998864 467899999999 8999999999999999999999999875
No 49
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=99.74 E-value=9.4e-18 Score=106.69 Aligned_cols=70 Identities=36% Similarity=0.625 Sum_probs=63.7
Q ss_pred eEEEeecCChHHHHHHHHHHHcCCCceEEeCCCC---CCchhhhhhCCCCCcccEEE-eCCeeeeehHHHHHHHH
Q 038634 5 VKLYGTWSSPFSRRIELALKLKGVPFEYIEEDLS---NKSPELLKYNPVHKKIPVLV-HNSKPIAESQVILEYID 75 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~g~vP~L~-~~g~~i~es~~I~~yL~ 75 (222)
|+||+++.||+|+++|++|+++|++|+.+.++.. ...+++.+.||. |++|+|+ ++|..++||.+|++||+
T Consensus 1 ~~Ly~~~~s~~~~~~~~~L~~~~l~~~~~~v~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~~l~es~aI~~yLe 74 (74)
T cd03051 1 MKLYDSPTAPNPRRVRIFLAEKGIDVPLVTVDLAAGEQRSPEFLAKNPA-GTVPVLELDDGTVITESVAICRYLE 74 (74)
T ss_pred CEEEeCCCCcchHHHHHHHHHcCCCceEEEeecccCccCCHHHHhhCCC-CCCCEEEeCCCCEEecHHHHHHHhC
Confidence 5899999999999999999999999999998764 356789999999 8999999 57889999999999985
No 50
>cd03057 GST_N_Beta GST_N family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site forms a covalent bond with GSH.
Probab=99.74 E-value=1.5e-17 Score=106.67 Aligned_cols=73 Identities=33% Similarity=0.551 Sum_probs=65.5
Q ss_pred eEEEeecCChHHHHHHHHHHHcCCCceEEeCCCCC---CchhhhhhCCCCCcccEEEeC-CeeeeehHHHHHHHHhhcC
Q 038634 5 VKLYGTWSSPFSRRIELALKLKGVPFEYIEEDLSN---KSPELLKYNPVHKKIPVLVHN-SKPIAESQVILEYIDEIWN 79 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~---~~~~~~~~~p~~g~vP~L~~~-g~~i~es~~I~~yL~~~~~ 79 (222)
|+||+++.+ .+++++++|+++|++|+.+.++... .+++++++||. |++|+|+++ |.+++||.+|++||++++|
T Consensus 1 ~~Ly~~~~~-~~~~v~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~np~-~~vP~l~~~~g~~l~eS~aI~~yL~~~~p 77 (77)
T cd03057 1 MKLYYSPGA-CSLAPHIALEELGLPFELVRVDLRTKTQKGADYLAINPK-GQVPALVLDDGEVLTESAAILQYLADLHP 77 (77)
T ss_pred CEEEeCCCC-chHHHHHHHHHcCCCceEEEEecccCccCCHhHHHhCCC-CCCCEEEECCCcEEEcHHHHHHHHHHhCc
Confidence 589999976 5899999999999999999888653 57899999999 899999976 8999999999999999875
No 51
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=99.73 E-value=1.5e-17 Score=105.55 Aligned_cols=70 Identities=36% Similarity=0.605 Sum_probs=64.8
Q ss_pred eEEEeecCChHHHHHHHHHHHcCCCceEEeCCCC---CCchhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHH
Q 038634 5 VKLYGTWSSPFSRRIELALKLKGVPFEYIEEDLS---NKSPELLKYNPVHKKIPVLVHNSKPIAESQVILEYID 75 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~---~~~~~~~~~~p~~g~vP~L~~~g~~i~es~~I~~yL~ 75 (222)
|+||+++.|+++++++++|+++|++|+.+.++.. ...+++++.||. |++|+|+++|.+++||.+|++||+
T Consensus 1 ~~L~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~~~~~~~~~p~-~~vP~l~~~~~~l~es~aI~~yL~ 73 (73)
T cd03042 1 MILYSYFRSSASYRVRIALNLKGLDYEYVPVNLLKGEQLSPAYRALNPQ-GLVPTLVIDGLVLTQSLAIIEYLD 73 (73)
T ss_pred CEEecCCCCcchHHHHHHHHHcCCCCeEEEecCccCCcCChHHHHhCCC-CCCCEEEECCEEEEcHHHHHHHhC
Confidence 5899999999999999999999999999998864 356889999998 899999999999999999999985
No 52
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=99.73 E-value=2.1e-17 Score=105.95 Aligned_cols=72 Identities=25% Similarity=0.535 Sum_probs=62.6
Q ss_pred ceEEEeecCChHHHHHHHHHHHcCCCceEEeCCCCCCchhhhhhCCCCCcccEEEeC----CeeeeehHHHHHHHHhhc
Q 038634 4 EVKLYGTWSSPFSRRIELALKLKGVPFEYIEEDLSNKSPELLKYNPVHKKIPVLVHN----SKPIAESQVILEYIDEIW 78 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~----g~~i~es~~I~~yL~~~~ 78 (222)
+++||+++.||+|++++++|.++|++|+.+.++... ..+ ...||. ++||+|+++ |.+|+||.+|++||+++.
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi~y~~~~~~~~~-~~~-~~~~~~-~~vP~l~~~~~~~~~~l~eS~~I~~yL~~~~ 76 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGIPYEVVEVNPVS-RKE-IKWSSY-KKVPILRVESGGDGQQLVDSSVIISTLKTYL 76 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCceEEEECCchh-HHH-HHHhCC-CccCEEEECCCCCccEEEcHHHHHHHHHHHc
Confidence 589999999999999999999999999999887533 233 356998 899999965 789999999999999874
No 53
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=99.72 E-value=2.6e-17 Score=103.40 Aligned_cols=65 Identities=46% Similarity=0.750 Sum_probs=56.3
Q ss_pred CChHHHHHHHHHHHcCCCceEEeCCC----CCCchhhhhhCCCCCcccEEEe-CCeeeeehHHHHHHHHhh
Q 038634 12 SSPFSRRIELALKLKGVPFEYIEEDL----SNKSPELLKYNPVHKKIPVLVH-NSKPIAESQVILEYIDEI 77 (222)
Q Consensus 12 ~sp~~~~v~~~l~~~gi~~~~~~v~~----~~~~~~~~~~~p~~g~vP~L~~-~g~~i~es~~I~~yL~~~ 77 (222)
+|||++|++++|+++|++|+...+.. ...+++|.++||. |+||+|++ +|.++.||.+|++||+++
T Consensus 1 ~sP~a~Rv~i~l~~~gl~~~~~~v~~~~~~~~~~~~~~~~~p~-~~VP~L~~~~g~vi~eS~~I~~yL~~~ 70 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGLPYEIKVVPLIPKGEQKPPEFLALNPR-GKVPVLVDPDGTVINESLAILEYLEEQ 70 (70)
T ss_dssp T-HHHHHHHHHHHHHTGTCEEEEEETTTTBCTTCHBHHHHSTT--SSSEEEETTTEEEESHHHHHHHHHHT
T ss_pred CchHhHHHHHHHHHhCCCCEEEEEeeecCccccChhhhccCcC-eEEEEEEECCCCEeeCHHHHHHHHhcC
Confidence 59999999999999999999988833 2456899999999 89999997 789999999999999874
No 54
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=99.72 E-value=5.8e-17 Score=104.28 Aligned_cols=72 Identities=21% Similarity=0.236 Sum_probs=62.4
Q ss_pred ceEEEeecCChHHHHHHHHHHHcCCCceEEeCCCCCCchhhhhhC-----CCCCcccEEEeCCeeeeehHHHHHHHHhhc
Q 038634 4 EVKLYGTWSSPFSRRIELALKLKGVPFEYIEEDLSNKSPELLKYN-----PVHKKIPVLVHNSKPIAESQVILEYIDEIW 78 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~-----p~~g~vP~L~~~g~~i~es~~I~~yL~~~~ 78 (222)
+++||+++.++.+++++++|+++|++|+.+.++.. +++.+.+ |. |+||+|+++|.+|+||.||++||++++
T Consensus 1 ~~~Ly~~~~~~~~~~v~~~l~~~gi~~e~~~v~~~---~~~~~~~~~~~~~~-g~vP~L~~~g~~l~ES~AI~~YL~~~~ 76 (79)
T cd03077 1 KPVLHYFNGRGRMESIRWLLAAAGVEFEEKFIESA---EDLEKLKKDGSLMF-QQVPMVEIDGMKLVQTRAILNYIAGKY 76 (79)
T ss_pred CCEEEEeCCCChHHHHHHHHHHcCCCcEEEEeccH---HHHHhhccccCCCC-CCCCEEEECCEEEeeHHHHHHHHHHHc
Confidence 46899999999999999999999999999988752 3333333 57 899999999999999999999999988
Q ss_pred C
Q 038634 79 N 79 (222)
Q Consensus 79 ~ 79 (222)
+
T Consensus 77 ~ 77 (79)
T cd03077 77 N 77 (79)
T ss_pred C
Confidence 7
No 55
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=99.71 E-value=7.4e-17 Score=102.83 Aligned_cols=67 Identities=31% Similarity=0.564 Sum_probs=60.9
Q ss_pred eEEEeec-------CChHHHHHHHHHHHcCCCceEEeCCCCCCchhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHhh
Q 038634 5 VKLYGTW-------SSPFSRRIELALKLKGVPFEYIEEDLSNKSPELLKYNPVHKKIPVLVHNSKPIAESQVILEYIDEI 77 (222)
Q Consensus 5 ~~Ly~~~-------~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~i~es~~I~~yL~~~ 77 (222)
++||+++ .||+|++++++|+++|++|+.+.++. .+.||. |++|+|+++|++++||.+|++||+++
T Consensus 2 ~~L~~~~~~~~~~~~sp~~~~v~~~L~~~gi~~~~~~~~~-------~~~~p~-g~vPvl~~~g~~l~eS~~I~~yL~~~ 73 (75)
T cd03080 2 ITLYQFPRAFGVPSLSPFCLKVETFLRMAGIPYENKFGGL-------AKRSPK-GKLPFIELNGEKIADSELIIDHLEEK 73 (75)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHCCCCcEEeecCc-------ccCCCC-CCCCEEEECCEEEcCHHHHHHHHHHH
Confidence 5899998 68999999999999999999988864 257898 89999999999999999999999998
Q ss_pred cC
Q 038634 78 WN 79 (222)
Q Consensus 78 ~~ 79 (222)
|+
T Consensus 74 ~~ 75 (75)
T cd03080 74 YG 75 (75)
T ss_pred cC
Confidence 74
No 56
>cd03075 GST_N_Mu GST_N family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the most abundant GSTs in human liver, skeletal muscle and brain, and are believed to provide protection against diseases inc
Probab=99.71 E-value=5.6e-17 Score=105.03 Aligned_cols=72 Identities=19% Similarity=0.244 Sum_probs=61.9
Q ss_pred EEEeecCChHHHHHHHHHHHcCCCceEEeCCCCC----Cchhhhhh-----CCCCCcccEEEeCCeeeeehHHHHHHHHh
Q 038634 6 KLYGTWSSPFSRRIELALKLKGVPFEYIEEDLSN----KSPELLKY-----NPVHKKIPVLVHNSKPIAESQVILEYIDE 76 (222)
Q Consensus 6 ~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~----~~~~~~~~-----~p~~g~vP~L~~~g~~i~es~~I~~yL~~ 76 (222)
+||++..++.|+++|++|+++|++|+.+.+++.. .++++... +|+ |+||+|+++|.+|+||.||++||++
T Consensus 2 ~l~y~~~~~~~~~~~~~l~~~gi~~e~~~v~~~~~~~~~~~~~~~~~~~~~~P~-g~vP~L~~~g~~l~ES~AIl~YLa~ 80 (82)
T cd03075 2 TLGYWDIRGLAQPIRLLLEYTGEKYEEKRYELGDAPDYDRSQWLNEKFKLGLDF-PNLPYYIDGDVKLTQSNAILRYIAR 80 (82)
T ss_pred EEEEeCCccccHHHHHHHHHcCCCcEEEEeccCCccccchHhhhccchhcCCcC-CCCCEEEECCEEEeehHHHHHHHhh
Confidence 7999999999999999999999999999998753 13445422 298 8999999999999999999999998
Q ss_pred hc
Q 038634 77 IW 78 (222)
Q Consensus 77 ~~ 78 (222)
++
T Consensus 81 ~~ 82 (82)
T cd03075 81 KH 82 (82)
T ss_pred cC
Confidence 64
No 57
>cd03190 GST_C_ECM4_like GST_C family, ECM4-like subfamily; composed of predominantly uncharacterized and taxonomically diverse proteins with similarity to the translation product of the Saccharomyces cerevisiae gene ECM4. ECM4, a gene of unknown function, is involved in cell surface biosynthesis and architecture. S. cerevisiae ECM4 mutants show increased amounts of the cell wall hexose, N-acetylglucosamine. More recently, global gene expression analysis shows that ECM4 is upregulated during genotoxic conditions and together with the expression profiles of 18 other genes could potentially differentiate between genotoxic and cytotoxic insults in yeast.
Probab=99.71 E-value=1.7e-16 Score=113.70 Aligned_cols=125 Identities=18% Similarity=0.254 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHhhhhhhhHhHHhhcc-chhhHHHHHHHHHHHHHHHHHhcCCCCcccCCCCChhHHHHHHHHHHHHhhh
Q 038634 89 YQRAMARFWGKFIDEKALATRMKANFA-EGKERELVTEEFFQQMKFLENELNGKDFFGGETIGFVDIVAIVVAIWFPLTQ 167 (222)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~ 167 (222)
..++++++|++|....+.+.+...... +++..+.....+.+.|+.||++|++++|++|+++|+|||++++.+.++....
T Consensus 3 ~~~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~LE~~L~~~~yl~Gd~~TlADi~l~~~l~~~~~~~ 82 (142)
T cd03190 3 ELRSEIDELNEWIYDNINNGVYKAGFATTQEAYDEAVDELFEALDRLEELLSDRRYLLGDRLTEADIRLFTTLIRFDAVY 82 (142)
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHccCCeeeCCCccHHHHHHHHHHHHHHHHh
Confidence 357889999999999888877665433 4555567788899999999999998999999999999999999887663221
Q ss_pred h-hh--ccccCCcCccchHHHHHHHHHccccccccCCChhhhHHHHHHHHh
Q 038634 168 E-VL--GVETFTEEKFPVLFKWIRKITEIDVVNECRPPREKHLAYVKARIE 215 (222)
Q Consensus 168 ~-~~--~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 215 (222)
. .. +... .+.||+|.+|+++|.++|++++++.....+.++++.+++
T Consensus 83 ~~~~~~~~~~--~~~~P~L~~w~~r~~~~P~~k~~~~~~~~~~~~~~~~~~ 131 (142)
T cd03190 83 VQHFKCNLKR--IRDYPNLWNYLRRLYQNPGVAETTNFDHIKQHYYGSHFP 131 (142)
T ss_pred hhhcccccch--hhhCchHHHHHHHHhcCchHhhhcCHHHHHHHHHhhcCC
Confidence 1 11 1111 268999999999999999999999988888888887754
No 58
>cd03184 GST_C_Omega GST_C family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a re
Probab=99.70 E-value=2.3e-16 Score=110.48 Aligned_cols=119 Identities=27% Similarity=0.377 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHhhhhhhhHhHHhhccchhhHHHHHHHHHHHHHHHHHhcCC--CCcccCCCCChhHHHHHHHHHHHHhhh
Q 038634 90 QRAMARFWGKFIDEKALATRMKANFAEGKERELVTEEFFQQMKFLENELNG--KDFFGGETIGFVDIVAIVVAIWFPLTQ 167 (222)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~t~aD~~l~~~l~~~~~~~ 167 (222)
++++.+.|+++++ .+...+...+.. ++..+...+.+.+.|+.||+.|++ ++|++|+++|+||+++++++.++....
T Consensus 2 ~ra~~r~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~le~~L~~~~~~yl~G~~~t~aDi~~~~~~~~~~~~~ 79 (124)
T cd03184 2 EKAQQKLLLERFS-KVVSAFYKLLGA-PSDREEKKAELRSALENLEEELTKRGTPFFGGDSPGMVDYMIWPWFERLEALK 79 (124)
T ss_pred hHHHHHHHHHHHh-hhhHHHHHHHhc-cccchhhHHHHHHHHHHHHHHHHhcCCCCcCCCCccHHHHHhhHHHHHHHHHH
Confidence 4888999999987 466666665554 556667888999999999999975 799999999999999999988876443
Q ss_pred hhhccccCCcCccchHHHHHHHHHccccccccCCChhhhHHHHH
Q 038634 168 EVLGVETFTEEKFPVLFKWIRKITEIDVVNECRPPREKHLAYVK 211 (222)
Q Consensus 168 ~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 211 (222)
...+.. ...+.+|+|.+|+++|.++|+++++++..+...++++
T Consensus 80 ~~~~~~-~~~~~~p~l~~w~~r~~~~p~v~~~~~~~~~~~~~~~ 122 (124)
T cd03184 80 LLLGYE-FPLDRFPKLKKWMDAMKEDPAVQAFYTDTEIHAEFLK 122 (124)
T ss_pred hhcccc-CCcccChHHHHHHHHhccChHHHHHhCCHHHHHHHHh
Confidence 321211 1247899999999999999999999999988877765
No 59
>cd03186 GST_C_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=99.70 E-value=2.8e-16 Score=107.20 Aligned_cols=105 Identities=19% Similarity=0.228 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHhhhhhhhHhHHhhccchhhHHHHHHHHHHHHHHHHHhcCCCCcccCCCCChhHHHHHHHHHHHHhhhh
Q 038634 89 YQRAMARFWGKFIDEKALATRMKANFAEGKERELVTEEFFQQMKFLENELNGKDFFGGETIGFVDIVAIVVAIWFPLTQE 168 (222)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~ 168 (222)
.++++++.|+.++++.+.+.+...+...++..+.....+.+.|..||++|++++|++|+++|+|||++++.+.++.
T Consensus 2 ~~ra~~r~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~~~~~~~~~~---- 77 (107)
T cd03186 2 VARARSRLLMHRIEQDWYPLVDTIEKGRKKEAEKARKELRESLLALAPVFAHKPYFMSEEFSLVDCALAPLLWRLP---- 77 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCcHHHHHHHHHHHHHH----
Confidence 4689999999999998888776655444555566778899999999999999999999999999999999886553
Q ss_pred hhccccCCcCccchHHHHHHHHHcccccccc
Q 038634 169 VLGVETFTEEKFPVLFKWIRKITEIDVVNEC 199 (222)
Q Consensus 169 ~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~ 199 (222)
..+.++ ...+|+|.+|++++.+||+++++
T Consensus 78 ~~~~~~--~~~~p~l~~w~~~~~~rpa~~~~ 106 (107)
T cd03186 78 ALGIEL--PKQAKPLKDYMERVFARDSFQKS 106 (107)
T ss_pred HcCCCC--cccchHHHHHHHHHHCCHHHHHh
Confidence 125443 25799999999999999999875
No 60
>cd03196 GST_C_5 GST_C family, unknown subfamily 5; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.69 E-value=4.7e-16 Score=107.40 Aligned_cols=110 Identities=15% Similarity=0.145 Sum_probs=88.4
Q ss_pred CCHHHHHHHHHHHHHhhhhhhhHhHHhhcc---chhhHHHHHHHHHHHHHHHHHhcCCCCcccCCCCChhHHHHHHHHHH
Q 038634 86 QDPYQRAMARFWGKFIDEKALATRMKANFA---EGKERELVTEEFFQQMKFLENELNGKDFFGGETIGFVDIVAIVVAIW 162 (222)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~ 162 (222)
.++..++.+++|+.+.+..+.+.+....+. ..+..+.....+.+.++.||++|++++|++|+++|+|||++++.+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~le~~L~~~~yl~Gd~~tlADi~l~~~l~~ 81 (115)
T cd03196 2 QDPAALKEMLALIAENDNEFKHHLDRYKYADRYPEESEEEYRQQAEAFLKDLEARLQQHSYLLGDKPSLADWAIFPFVRQ 81 (115)
T ss_pred CchHHHHHHHHHHHHcchhhHHHHHhccchhhcCcccHHHHHHHHHHHHHHHHHHHccCCccCCCCccHHHHHHHHHHHH
Confidence 367889999999999999888877764443 22245667888999999999999999999999999999999998766
Q ss_pred HHhhhhhhccccCCcCccchHHHHHHHHHcccccccc
Q 038634 163 FPLTQEVLGVETFTEEKFPVLFKWIRKITEIDVVNEC 199 (222)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~ 199 (222)
+... ...+.. ..++|+|.+|++++.++|+++++
T Consensus 82 ~~~~-~~~~~~---~~~~P~L~~w~~r~~~rpa~~~~ 114 (115)
T cd03196 82 FAHV-DPKWFD---QSPYPRLRRWLNGFLASPLFSKI 114 (115)
T ss_pred HHHh-hhcccC---cccCHHHHHHHHHHHcChHHHhh
Confidence 6422 111221 37899999999999999999875
No 61
>KOG2903 consensus Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=1.2e-16 Score=120.00 Aligned_cols=196 Identities=20% Similarity=0.286 Sum_probs=138.5
Q ss_pred cceEEEeecCChHHHHHHHHHHHcCCC----ceEEeCCCCCCchhhhh------------------------------hC
Q 038634 3 EEVKLYGTWSSPFSRRIELALKLKGVP----FEYIEEDLSNKSPELLK------------------------------YN 48 (222)
Q Consensus 3 ~~~~Ly~~~~sp~~~~v~~~l~~~gi~----~~~~~v~~~~~~~~~~~------------------------------~~ 48 (222)
+++.||..-.|||++|+.+.++++|+. +..+.--..++...|.. .+
T Consensus 36 gryhLYvslaCPWAhRtLi~r~LKGL~~~i~~s~v~~~~d~~gW~F~~~~~~~nDs~~l~~~~d~~~g~k~l~elY~~~~ 115 (319)
T KOG2903|consen 36 GRYHLYVSLACPWAHRTLIVRALKGLEPAIGVSVVHWHLDDKGWRFLDEHIIINDSERLGVTPDPLNGAKRLRELYYIAS 115 (319)
T ss_pred ceEEEEEeccCcHHHHHHHHHHHcCccccceeEEeccccCCCcccCCCcccCCCchhcccCCCcccccchhHHHHHhhcC
Confidence 478999999999999999999999985 22221100111111111 12
Q ss_pred CCC---CcccEEEeC---CeeeeehHHHHHHHHhhc---------CCCCCCCCCHHHHHHHHHHHHHhhhhhhhHhHHhh
Q 038634 49 PVH---KKIPVLVHN---SKPIAESQVILEYIDEIW---------NNNPILPQDPYQRAMARFWGKFIDEKALATRMKAN 113 (222)
Q Consensus 49 p~~---g~vP~L~~~---g~~i~es~~I~~yL~~~~---------~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (222)
|.+ -+||||-|- ..+=.||..|++.+...| +.-.|+|.+ .++.++.+.+|+-..+...+..--
T Consensus 116 p~Y~grfTVPVLWD~k~ktIVnNES~eIIr~fNs~f~ef~~~~e~~~lDL~P~~--L~~~Ide~N~wvy~~INNGVYk~G 193 (319)
T KOG2903|consen 116 PNYTGRFTVPVLWDLKTKTIVNNESSEIIRMFNSAFDEFNGIAENPVLDLYPSS--LRAQIDETNSWVYDKINNGVYKCG 193 (319)
T ss_pred CCCCceEEEEEEEccccceeecCchHHHHHHHhhhhhhhhccccCCccccCCHH--HHHHHhhhhceecccccCceeeec
Confidence 211 269999974 466789999999999333 223467765 577888888887766655544433
Q ss_pred c-cchhhHHHHHHHHHHHHHHHHHhcCCCC--cccCCCCChhHHHHHHHHHHHHhhhh-hhcccc--CCcCccchHHHHH
Q 038634 114 F-AEGKERELVTEEFFQQMKFLENELNGKD--FFGGETIGFVDIVAIVVAIWFPLTQE-VLGVET--FTEEKFPVLFKWI 187 (222)
Q Consensus 114 ~-~~~~~~~~~~~~~~~~l~~le~~L~~~~--~l~G~~~t~aD~~l~~~l~~~~~~~~-~~~~~~--~~~~~~p~l~~~~ 187 (222)
+ ..++..+...+.+.+.|+.+|..|+++. |++|+++|-||+.+++.+.++..... ....+. + +.+||+|..|.
T Consensus 194 FA~~~e~Ye~~V~~lfe~LDr~E~vL~~~~~~f~~G~~LTeaDirLy~TiIRFD~VY~~hFKCn~~~i-r~~Yp~l~~~l 272 (319)
T KOG2903|consen 194 FAEKQEAYEEEVNQLFEALDRCEDVLGKNRKYFLCGDTLTEADIRLYTTIIRFDEVYVQHFKCNKKTI-RDEYPNLHNWL 272 (319)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHhcccceEeeccccchhheeeeeeEEeehhhhheeeecchhhh-hccCcHHHHHH
Confidence 3 3677788889999999999999999865 99999999999999998877732111 112221 2 46899999999
Q ss_pred HHHHc-cccccccCC
Q 038634 188 RKITE-IDVVNECRP 201 (222)
Q Consensus 188 ~~~~~-~p~~~~~~~ 201 (222)
+++-+ .|++..+..
T Consensus 273 k~iY~~~~~~~~Ttd 287 (319)
T KOG2903|consen 273 KNIYWNIPGFSSTTD 287 (319)
T ss_pred HHHHhhccchhhccc
Confidence 99999 888887654
No 62
>cd03198 GST_C_CLIC GST_C family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin, and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division, and apoptosis. They can exist in both water-soluble and membrane-bound states and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and adopts a fold similar to GSTs, containing an N-terminal domain with a thioredoxin fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. T
Probab=99.68 E-value=5.9e-16 Score=108.47 Aligned_cols=108 Identities=13% Similarity=0.178 Sum_probs=86.8
Q ss_pred hhhhhhHhHHhhcc-chhhHHHHHHHHHHHHHHHHHhcCC----------------CCcccCCCCChhHHHHHHHHHHHH
Q 038634 102 DEKALATRMKANFA-EGKERELVTEEFFQQMKFLENELNG----------------KDFFGGETIGFVDIVAIVVAIWFP 164 (222)
Q Consensus 102 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~le~~L~~----------------~~~l~G~~~t~aD~~l~~~l~~~~ 164 (222)
.+.+++.+...+.+ .++..+.....+.+.|..||.+|++ ++|++|+++|+|||++++.+.++.
T Consensus 8 ~~~~f~~~~~~~~~~~~~~~e~~~~~l~~~L~~ld~~L~~~~~~~~~~~~~~~~~~~~fL~Gd~fTlADi~l~p~L~~~~ 87 (134)
T cd03198 8 GEDIFAKFSAYIKNSNPALNENLEKGLLKALKKLDDYLNSPLPDEIDSAEDEGVSQRKFLDGDELTLADCNLLPKLHIVK 87 (134)
T ss_pred HHHHHHHHHHHHcCCChhhhHHHHHHHHHHHHHHHHHHccCccccccccccccccCCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 34567777777666 3455667778999999999999986 679999999999999999988775
Q ss_pred hhhhh-hccccCCcCccchHHHHHHHHHccccccccCCChhhhHHHHH
Q 038634 165 LTQEV-LGVETFTEEKFPVLFKWIRKITEIDVVNECRPPREKHLAYVK 211 (222)
Q Consensus 165 ~~~~~-~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 211 (222)
..... .+..+ .+.+|+|.+|++++.+||+|+++++...+++..++
T Consensus 88 ~~~~~~~g~~i--~~~~P~L~aw~~ri~aRPsfk~t~~~~~~i~~~~~ 133 (134)
T cd03198 88 VVAKKYRNFEI--PADLTGLWRYLKNAYQREEFTNTCPADQEIELAYK 133 (134)
T ss_pred HHHHhhcCCCc--cccCHHHHHHHHHHHCCHHHHHHcCCHHHHHHHhc
Confidence 43221 25444 37899999999999999999999999988887764
No 63
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=99.67 E-value=2.3e-16 Score=102.84 Aligned_cols=67 Identities=27% Similarity=0.416 Sum_probs=58.6
Q ss_pred cCChHHHHHHHHHHHcCCCceEEeCCCCCC---chhhhhhCCCCCcccEEEeC-CeeeeehHHHHHHHHhhcC
Q 038634 11 WSSPFSRRIELALKLKGVPFEYIEEDLSNK---SPELLKYNPVHKKIPVLVHN-SKPIAESQVILEYIDEIWN 79 (222)
Q Consensus 11 ~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~---~~~~~~~~p~~g~vP~L~~~-g~~i~es~~I~~yL~~~~~ 79 (222)
++||+|+++|++|.++|++|+.+.++.... .+++ +.||. |++|+|+++ |.+++||.+|++||++++|
T Consensus 14 ~~Sp~~~kv~~~L~~~~i~~~~~~~~~~~~~~~~~~~-~~~p~-~~vP~L~~~~~~~l~eS~aI~~yL~~~~p 84 (84)
T cd03038 14 AFSPNVWKTRLALNHKGLEYKTVPVEFPDIPPILGEL-TSGGF-YTVPVIVDGSGEVIGDSFAIAEYLEEAYP 84 (84)
T ss_pred CcCChhHHHHHHHHhCCCCCeEEEecCCCcccccccc-cCCCC-ceeCeEEECCCCEEeCHHHHHHHHHHhCc
Confidence 689999999999999999999998876532 2334 78998 899999998 8999999999999999875
No 64
>PF02798 GST_N: Glutathione S-transferase, N-terminal domain; InterPro: IPR004045 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of Cephalopoda is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Soluble GSTs activate glutathione (GSH) to GS-. In many GSTs, this is accomplished by a Tyr at H-bonding distance from the sulphur of GSH. These enzymes catalyse nucleophilic attack by reduced glutathione (GSH) on nonpolar compounds that contain an electrophillic carbon, nitrogen, or sulphur atom []. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold, with each monomer composed of two distinct domains []. The N-terminal domain forms a thioredoxin-like fold that binds the glutathione moiety, while the C-terminal domain contains several hydrophobic alpha-helices that specifically bind hydrophobic substrates. This entry represents the N-terminal domain of GST.; GO: 0005515 protein binding; PDB: 2VCT_H 2WJU_B 4ACS_A 1BYE_D 1AXD_B 2VCV_P 1TDI_A 1JLV_D 1Y6E_A 1U88_B ....
Probab=99.67 E-value=4.2e-16 Score=99.49 Aligned_cols=72 Identities=36% Similarity=0.497 Sum_probs=60.1
Q ss_pred eEEEeecCChHHHHHHHHHHHcCCCceEEeCCCCC---CchhhhhhCCCCCcccEEEeC-CeeeeehHHHHHHHHh
Q 038634 5 VKLYGTWSSPFSRRIELALKLKGVPFEYIEEDLSN---KSPELLKYNPVHKKIPVLVHN-SKPIAESQVILEYIDE 76 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~---~~~~~~~~~p~~g~vP~L~~~-g~~i~es~~I~~yL~~ 76 (222)
|+|+++...+++.++|++|+++|++|+.+.++... ++++|.+.||..|++|+|+++ |.+|+||.||++||++
T Consensus 1 ~~l~l~~~~~~~~~~r~~l~~~gv~~e~~~v~~~~~~~~~~e~~~~~p~~g~vP~l~~~~~~~l~es~AI~~YLa~ 76 (76)
T PF02798_consen 1 MTLTLYNGRGRSERIRLLLAEKGVEYEDVRVDFEKGEHKSPEFLAINPMFGKVPALEDGDGFVLTESNAILRYLAR 76 (76)
T ss_dssp EEEEEESSSTTTHHHHHHHHHTT--EEEEEEETTTTGGGSHHHHHHTTTSSSSSEEEETTTEEEESHHHHHHHHHH
T ss_pred CEEEEECCCCchHHHHHHHHHhcccCceEEEecccccccchhhhhcccccceeeEEEECCCCEEEcHHHHHHHhCC
Confidence 45555666669999999999999999999998742 459999999963599999998 9999999999999985
No 65
>cd03043 GST_N_1 GST_N family, unknown subfamily 1; composed of uncharacterized proteins, predominantly from bacteria, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.66 E-value=4.9e-16 Score=98.42 Aligned_cols=66 Identities=35% Similarity=0.487 Sum_probs=60.1
Q ss_pred eecCChHHHHHHHHHHHcCCCceEEeCCCCC--CchhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHH
Q 038634 9 GTWSSPFSRRIELALKLKGVPFEYIEEDLSN--KSPELLKYNPVHKKIPVLVHNSKPIAESQVILEYID 75 (222)
Q Consensus 9 ~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~--~~~~~~~~~p~~g~vP~L~~~g~~i~es~~I~~yL~ 75 (222)
....||++++++++|+++|++|+.+.++... ..++|.++||. |++|+|+++|.+|+||.+|++||+
T Consensus 6 ~~~~s~~s~~v~~~L~~~gl~~e~~~v~~~~~~~~~~~~~~nP~-g~vP~L~~~g~~l~eS~aI~~YL~ 73 (73)
T cd03043 6 NKNYSSWSLRPWLLLKAAGIPFEEILVPLYTPDTRARILEFSPT-GKVPVLVDGGIVVWDSLAICEYLA 73 (73)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCccccHHHHhhCCC-CcCCEEEECCEEEEcHHHHHHHhC
Confidence 4678999999999999999999999988653 56889999999 899999999999999999999984
No 66
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=99.65 E-value=9e-16 Score=96.11 Aligned_cols=70 Identities=43% Similarity=0.642 Sum_probs=63.0
Q ss_pred eEEEeecCChHHHHHHHHHHHcCCCceEEeCCCCCCch-hhhhhCCCCCcccEEEeCCeeeeehHHHHHHHH
Q 038634 5 VKLYGTWSSPFSRRIELALKLKGVPFEYIEEDLSNKSP-ELLKYNPVHKKIPVLVHNSKPIAESQVILEYID 75 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~-~~~~~~p~~g~vP~L~~~g~~i~es~~I~~yL~ 75 (222)
++||+++.||+|++++++|+++|++|+.+.++...... ++.+.+|. +++|+|+++|.++.||.+|++||+
T Consensus 1 ~~ly~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~P~l~~~~~~~~es~~I~~yl~ 71 (71)
T cd00570 1 LKLYYFPGSPRSLRVRLALEEKGLPYELVPVDLGEGEQEEFLALNPL-GKVPVLEDGGLVLTESLAILEYLA 71 (71)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCCCcEEEEeCCCCCCCHHHHhcCCC-CCCCEEEECCEEEEcHHHHHHHhC
Confidence 58999999999999999999999999999998654333 58889998 899999999999999999999984
No 67
>cd03188 GST_C_Beta GST_C family, Class Beta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Unlike mammalian GSTs which detoxify a broad range of compounds, the bacterial class Beta GSTs exhibit limited GSH conjugating activity with a narrow range of substrates. In addition to GSH conjugation, they also bind antibiotics and reduce the antimicrobial activity of beta-lactam drugs. The structure of the Proteus mirabilis enzyme reveals that the cysteine in the active site for
Probab=99.63 E-value=2.6e-15 Score=103.42 Aligned_cols=104 Identities=17% Similarity=0.351 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHhhhhhhhHhHHhhccc---------hhhHHHHHHHHHHHHHHHHHhcCCCCcccCCCCChhHHHHHHHH
Q 038634 90 QRAMARFWGKFIDEKALATRMKANFAE---------GKERELVTEEFFQQMKFLENELNGKDFFGGETIGFVDIVAIVVA 160 (222)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l 160 (222)
+++++++|+.+.++.+.+.+...+... +...+...+.+.+.+..||+.|++++|++|+++|+|||++++.+
T Consensus 2 ~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~aDi~~~~~~ 81 (114)
T cd03188 2 ERARLLEWLNFLSSELHKAFGPLFYPARWATDEAAQEEVKAAARERLAARLAYLDAQLAGGPYLLGDRFSVADAYLFVVL 81 (114)
T ss_pred cHHHHHHHHHHHhhhhchhhhhcccccccccChhhHHHHHHHHHHHHHHHHHHHHHHhcCCCeeeCCCcchHHHHHHHHH
Confidence 478899999999888888765444321 22234566788999999999999889999999999999999988
Q ss_pred HHHHhhhhhhccccCCcCccchHHHHHHHHHccccccccC
Q 038634 161 IWFPLTQEVLGVETFTEEKFPVLFKWIRKITEIDVVNECR 200 (222)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 200 (222)
.++... +.+. +++|+|.+|+++|.++|++++++
T Consensus 82 ~~~~~~----~~~~---~~~p~l~~w~~~~~~~p~~k~~~ 114 (114)
T cd03188 82 RWAPGV----GLDL---SDWPNLAAYLARVAARPAVQAAL 114 (114)
T ss_pred HHHhhc----CCCh---hhChHHHHHHHHHHhCHHhHhhC
Confidence 776421 3322 67999999999999999998753
No 68
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=99.61 E-value=3.5e-15 Score=94.29 Aligned_cols=65 Identities=31% Similarity=0.502 Sum_probs=58.3
Q ss_pred eEEEeec-------CChHHHHHHHHHHHcCCCceEEeCCCCCCchhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHhh
Q 038634 5 VKLYGTW-------SSPFSRRIELALKLKGVPFEYIEEDLSNKSPELLKYNPVHKKIPVLVHNSKPIAESQVILEYIDEI 77 (222)
Q Consensus 5 ~~Ly~~~-------~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~i~es~~I~~yL~~~ 77 (222)
++||.++ .||+|++++++|+++|++|+.+.++... .||. |++|+|+++|.++.||.+|++||+++
T Consensus 1 ~~L~~~~~~~~~~s~sp~~~~v~~~L~~~~i~~~~~~~~~~~-------~~p~-g~vP~l~~~g~~l~es~~I~~yL~~~ 72 (72)
T cd03054 1 LELYQWGRAFGLPSLSPECLKVETYLRMAGIPYEVVFSSNPW-------RSPT-GKLPFLELNGEKIADSEKIIEYLKKK 72 (72)
T ss_pred CEEEEeCCCCCCCCCCHHHHHHHHHHHhCCCceEEEecCCcc-------cCCC-cccCEEEECCEEEcCHHHHHHHHhhC
Confidence 4688877 9999999999999999999999987522 6898 89999999999999999999999874
No 69
>cd03201 GST_C_DHAR GST_C family, Dehydroascorbate Reductase (DHAR) subfamily; composed of plant-specific DHARs, monomeric enzymes catalyzing the reduction of DHA into ascorbic acid (AsA) using glutathione as the reductant. DHAR allows plants to recycle oxidized AsA before it is lost. AsA serves as a cofactor of violaxanthin de-epoxidase in the xanthophyll cycle and as an antioxidant in the detoxification of reactive oxygen species. Because AsA is the major reductant in plants, DHAR serves to regulate their redox state. It has been suggested that a significant portion of DHAR activity is plastidic, acting to reduce the large amounts of ascorbate oxidized during hydrogen peroxide scavenging by ascorbate peroxidase. DHAR contains a conserved cysteine in its active site and in addition to its reductase activity, shows thiol transferase activity similar to glutaredoxins.
Probab=99.61 E-value=1.3e-14 Score=100.90 Aligned_cols=105 Identities=13% Similarity=0.187 Sum_probs=80.2
Q ss_pred hhhhHhHHhhccchhhHHHHHHHHHHHHHHHHHhcCC-CCcccCCCCChhHHHHHHHHHHHHhh-hhhhccccCCcCccc
Q 038634 104 KALATRMKANFAEGKERELVTEEFFQQMKFLENELNG-KDFFGGETIGFVDIVAIVVAIWFPLT-QEVLGVETFTEEKFP 181 (222)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~-~~~l~G~~~t~aD~~l~~~l~~~~~~-~~~~~~~~~~~~~~p 181 (222)
.+.+.+...+....+. ++..+.+.+.|..||+.|++ ++|++||++|+||+++++.+.++... ....+..+ .+.+|
T Consensus 13 ~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~Le~~L~~~~~fl~Gd~~TlADi~l~~~l~~l~~~~~~~~~~~~--~~~~P 89 (121)
T cd03201 13 KIFSTFVGFLKSKDSN-DGTEQALLDELEALEDHLKENGPFINGEKISAVDLSLAPKLYHLEIALGHYKNWSV--PESLT 89 (121)
T ss_pred HHHHHHHHHHHCCcHH-HHHHHHHHHHHHHHHHHHhcCCCccCCCCCCHHhHHHHHHHHHHHHHHHHhcCCCC--cccch
Confidence 3555555555543333 55667899999999999985 79999999999999999988777532 11123333 37899
Q ss_pred hHHHHHHHHHccccccccCCChhhhHHHHH
Q 038634 182 VLFKWIRKITEIDVVNECRPPREKHLAYVK 211 (222)
Q Consensus 182 ~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 211 (222)
+|.+|++++.+||+++++++...++...+.
T Consensus 90 ~l~~w~~rl~~rps~~~t~~~~~~~~~~~~ 119 (121)
T cd03201 90 SVKSYMKALFSRESFVKTKAEKEDVIAGWA 119 (121)
T ss_pred HHHHHHHHHHCCchhhhcCCCHHHHHHHhc
Confidence 999999999999999999998888766553
No 70
>cd03203 GST_C_Lambda GST_C family, Class Lambda subfamily; composed of plant-specific class Lambda GSTs. GSTs are cytosolic, usually dimeric, proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Lambda subfamily was recently discovered, together with dehydroascorbate reductases (DHARs), as two outlying groups of the GST superfamily in Arabidopsis thaliana, which contain conserved active site cysteines. Characterization of recombinant A. thaliana proteins show that Lambda class GSTs are monomeric, similar
Probab=99.60 E-value=7.8e-15 Score=102.09 Aligned_cols=115 Identities=21% Similarity=0.345 Sum_probs=82.1
Q ss_pred CHHHHHHHHHHHHHhhhhhhhHhHHhhccchhhHHHHHHHHHHHHHHHHHhcC---CCCcccCCCCChhHHHHHHHHHHH
Q 038634 87 DPYQRAMARFWGKFIDEKALATRMKANFAEGKERELVTEEFFQQMKFLENELN---GKDFFGGETIGFVDIVAIVVAIWF 163 (222)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~---~~~~l~G~~~t~aD~~l~~~l~~~ 163 (222)
|+.+++.+++++.+... +...+...+..... ...+.+.++.||+.|+ +++|++| ++|+|||++++.+.++
T Consensus 1 d~~~ra~~~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~~~l~~Le~~L~~~~~~~fl~G-~~tlADi~l~~~~~~~ 73 (120)
T cd03203 1 DPAKREFADELLAYTDA-FTKALYSSLIKGDP-----SAEAAAALDYIENALSKFDDGPFFLG-QFSLVDIAYVPFIERF 73 (120)
T ss_pred CHHHHHHHHHHHHHHHH-HHHHHHHHHhcCCc-----hHHHHHHHHHHHHHHHhcCCCCCcCC-CccHHHHHHHHHHHHH
Confidence 46689999999988433 33222222221111 2244667788888886 4799999 9999999999998776
Q ss_pred Hhh-hhhhccccCCcCccchHHHHHHHHHccccccccCCChhhhHHHH
Q 038634 164 PLT-QEVLGVETFTEEKFPVLFKWIRKITEIDVVNECRPPREKHLAYV 210 (222)
Q Consensus 164 ~~~-~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~~~~~~ 210 (222)
... ....+.++ .+++|+|.+|+++|.++|+++++.+..+.+.+.+
T Consensus 74 ~~~~~~~~~~~~--~~~~P~l~~W~~~~~~rp~~~~~~~~~~~~~~~~ 119 (120)
T cd03203 74 QIFLSELFNYDI--TEGRPNLAAWIEEMNKIEAYTQTKQDPQELLDLA 119 (120)
T ss_pred HHHHHHhcCccc--cccCcHHHHHHHHHhcchHHHhHcCCHHHHHhhh
Confidence 432 22235554 3689999999999999999999999888776654
No 71
>cd03209 GST_C_Mu GST_C family, Class Mu subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Mu subfamily is composed of eukaryotic GSTs. In rats, at least six distinct class Mu subunits have been identified, with homologous genes in humans for five of these subunits. Class Mu GSTs can form homodimers and heterodimers, giving a large number of possible isoenzymes that can be formed, all with overlapping activities but different substrate specificities. They are the m
Probab=99.60 E-value=1.3e-14 Score=101.24 Aligned_cols=109 Identities=11% Similarity=0.188 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHhhhhhhhHhHHhhccc--hhhHHHHHHHHHHHHHHHHHhcCCCCcccCCCCChhHHHHHHHHHHHHhhh
Q 038634 90 QRAMARFWGKFIDEKALATRMKANFAE--GKERELVTEEFFQQMKFLENELNGKDFFGGETIGFVDIVAIVVAIWFPLTQ 167 (222)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~ 167 (222)
++++++++++.+.+ +...+...++.. ....+.....+.+.++.||++|++++|++|+++|+||+++++.+.++...
T Consensus 2 e~~~id~~~~~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~T~aDi~l~~~~~~~~~~- 79 (121)
T cd03209 2 ERIRVDMLEQQAMD-LRMGLARICYSPDFEKLKPDYLAKLPDKLKLFSDFLGDRPWFAGDKITYVDFLLYEALDQHRIF- 79 (121)
T ss_pred chHHHHHHHHHHHH-HHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHHHHhCCCCCcCCCCccHHHHHHHHHHHHHHHh-
Confidence 46778888887776 555555554432 22334456778899999999999889999999999999999988888532
Q ss_pred hhhccccCCcCccchHHHHHHHHHccccccccCCChhh
Q 038634 168 EVLGVETFTEEKFPVLFKWIRKITEIDVVNECRPPREK 205 (222)
Q Consensus 168 ~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~ 205 (222)
+... .+.||+|.+|++++.++|++++++.+++.
T Consensus 80 ---~~~~--~~~~P~l~~~~~rv~~~p~vk~~~~~~~~ 112 (121)
T cd03209 80 ---EPDC--LDAFPNLKDFLERFEALPKISAYMKSDRF 112 (121)
T ss_pred ---Cccc--cccChHHHHHHHHHHHCHHHHHHHhcccC
Confidence 1122 36899999999999999999999887754
No 72
>cd03191 GST_C_Zeta GST_C family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates, but display modest GSH peroxidase activity. They are also implicated in the detoxification of th
Probab=99.59 E-value=8.9e-15 Score=101.97 Aligned_cols=108 Identities=16% Similarity=0.142 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHhhhhhhhHhHHhhc----c-----chhhHHHHHHHHHHHHHHHHHhcC--CCCcccCCCCChhHHHHH
Q 038634 89 YQRAMARFWGKFIDEKALATRMKANF----A-----EGKERELVTEEFFQQMKFLENELN--GKDFFGGETIGFVDIVAI 157 (222)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~-----~~~~~~~~~~~~~~~l~~le~~L~--~~~~l~G~~~t~aD~~l~ 157 (222)
.+++++++|+.++++.+.+.+...+. . .....+.....+.+.|..||++|+ +++|++|+++|+|||+++
T Consensus 2 ~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~l~G~~~t~ADi~~~ 81 (121)
T cd03191 2 KKRARVRALALIIACDIHPLNNLRVLKYLTEELGLDEEAKNAWYRHWIARGFAALEKLLAQTAGKFCFGDEPTLADICLV 81 (121)
T ss_pred hhHHHHHHHHHHHHccCCccccHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecCCcCCHHHHHHH
Confidence 46889999999998777754322111 1 111112234668899999999997 457999999999999999
Q ss_pred HHHHHHHhhhhhhccccCCcCccchHHHHHHHHHccccccccCCCh
Q 038634 158 VVAIWFPLTQEVLGVETFTEEKFPVLFKWIRKITEIDVVNECRPPR 203 (222)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~ 203 (222)
+.+.++.. . +.++ ..+|+|.+|++++.++|+++++.+.+
T Consensus 82 ~~~~~~~~---~-~~~~---~~~p~l~~w~~~~~~~p~~~~~~~~~ 120 (121)
T cd03191 82 PQVYNARR---F-GVDL---SPYPTIARINEACLELPAFQAAHPDN 120 (121)
T ss_pred HHHHHHHH---h-CCCc---ccCcHHHHHHHHHHhChhHHHhCcCc
Confidence 98876632 1 4433 77999999999999999999987653
No 73
>cd03189 GST_C_GTT1_like GST_C family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endopl
Probab=99.59 E-value=2.8e-14 Score=99.13 Aligned_cols=103 Identities=19% Similarity=0.311 Sum_probs=80.1
Q ss_pred CCCHHHHHHHHHHHHHhhhhhhhHhHHhh-c---cc-----------hhhHHHHHHHHHHHHHHHHHhcCCCCcccCCCC
Q 038634 85 PQDPYQRAMARFWGKFIDEKALATRMKAN-F---AE-----------GKERELVTEEFFQQMKFLENELNGKDFFGGETI 149 (222)
Q Consensus 85 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~-----------~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~ 149 (222)
|.++.+++++++|+.+..+.+.+.+...+ . .. ....+.....+.+.|+.||++|++++|++|+++
T Consensus 2 ~~~~~~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~Gd~~ 81 (119)
T cd03189 2 PPDTAEYADYLYWLHFAEGSLMPPLLLKLVLSRIGSAPPPIANKIADKVLAGFINPELKKHLDFLEDRLAKKGYFVGDKL 81 (119)
T ss_pred CCCHHHHHHHHHHHHHHhHhhhHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHHhHHHHHHHHHHHHHHccCCCCCCCCC
Confidence 56888999999999999888887754322 1 11 112233456788999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHhhhhhhccccCCcCccchHHHHHHHHHccc
Q 038634 150 GFVDIVAIVVAIWFPLTQEVLGVETFTEEKFPVLFKWIRKITEID 194 (222)
Q Consensus 150 t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p 194 (222)
|+|||++++.+.++... +.. ...+|+|.+|++++.++|
T Consensus 82 t~ADi~l~~~~~~~~~~----~~~---~~~~p~l~~w~~~~~~~p 119 (119)
T cd03189 82 TAADIMMSFPLEAALAR----GPL---LEKYPNIAAYLERIEARP 119 (119)
T ss_pred CHHHHHHHHHHHHHHHc----Ccc---cccCchHHHHHHHHhcCC
Confidence 99999999988777421 222 378999999999999986
No 74
>cd03182 GST_C_GTT2_like GST_C family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensiti
Probab=99.59 E-value=3.9e-14 Score=98.07 Aligned_cols=104 Identities=17% Similarity=0.263 Sum_probs=82.4
Q ss_pred CHHHHHHHHHHHHHhhhhhhhHhHHhhcc-------------chhhHHHHHHHHHHHHHHHHHhcCCCCcccCCCCChhH
Q 038634 87 DPYQRAMARFWGKFIDEKALATRMKANFA-------------EGKERELVTEEFFQQMKFLENELNGKDFFGGETIGFVD 153 (222)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD 153 (222)
|+.+++.+++|+.+++..+.+.+...+.. .....++....+.+.|..||++|++++|++|+++|+||
T Consensus 1 d~~~ra~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~le~~L~~~~~l~gd~~t~aD 80 (117)
T cd03182 1 TPLERAQIEMWQRRAELQGLYPIGQAFRHATPGLKPPDREEQVPEWGERSKARAADFLAYLDTRLAGSPYVAGDRFTIAD 80 (117)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCccccccCHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHH
Confidence 46789999999999888787765544321 12233566788999999999999988999999999999
Q ss_pred HHHHHHHHHHHhhhhhhccccCCcCccchHHHHHHHHHccccc
Q 038634 154 IVAIVVAIWFPLTQEVLGVETFTEEKFPVLFKWIRKITEIDVV 196 (222)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 196 (222)
|++++.+.++... +.++ ..++|+|.+|++++.++|++
T Consensus 81 i~l~~~~~~~~~~----~~~~--~~~~p~l~~w~~~~~~~p~~ 117 (117)
T cd03182 81 ITAFVGLDFAKVV----KLRV--PEELTHLRAWYDRMAARPSA 117 (117)
T ss_pred HHHHHHhHHHHhc----CCCC--ccccHHHHHHHHHHHhccCC
Confidence 9999998877432 4443 36799999999999999974
No 75
>cd03177 GST_C_Delta_Epsilon GST_C family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites th
Probab=99.58 E-value=1.8e-14 Score=100.05 Aligned_cols=105 Identities=16% Similarity=0.330 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHhhhhhhhHhHHhhc----cchhhHHHHHHHHHHHHHHHHHhcCCCCcccCCCCChhHHHHHHHHHHHHh
Q 038634 90 QRAMARFWGKFIDEKALATRMKANF----AEGKERELVTEEFFQQMKFLENELNGKDFFGGETIGFVDIVAIVVAIWFPL 165 (222)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~ 165 (222)
+++++.+|+.+..+.+.+.+...+. ......+.....+.+.|..||++|++++|++|+++|+||+++++++.++..
T Consensus 2 ~~a~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~s~aDi~l~~~~~~~~~ 81 (118)
T cd03177 2 KRAIVNQRLHFDSGTLYQRLRDYYYPILFGGAEPPEEKLDKLEEALDFLETFLEGSDYVAGDQLTIADLSLVATVSTLEA 81 (118)
T ss_pred hHHHHHHHHHhhhchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHccCCeeCCCCcCHHHHHHHHHHHHHHH
Confidence 4788899998887767765544332 222445667788999999999999988999999999999999999988842
Q ss_pred hhhhhccccCCcCccchHHHHHHHHHccccccccC
Q 038634 166 TQEVLGVETFTEEKFPVLFKWIRKITEIDVVNECR 200 (222)
Q Consensus 166 ~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 200 (222)
..+.+. ..+|+|.+|+++|.++|++++..
T Consensus 82 ---~~~~~~---~~~p~l~~w~~~~~~~p~~~~~~ 110 (118)
T cd03177 82 ---LLPLDL---SKYPNVRAWLERLKALPPYEEAN 110 (118)
T ss_pred ---hcCCCh---hhCchHHHHHHHHHcccchHHHH
Confidence 113332 67999999999999999999854
No 76
>cd03187 GST_C_Phi GST_C family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes a
Probab=99.56 E-value=3.2e-14 Score=98.57 Aligned_cols=106 Identities=13% Similarity=0.201 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHhhhhhhhHhHHh----hc-------cchhhHHHHHHHHHHHHHHHHHhcCCCCcccCCCCChhHHHHHH
Q 038634 90 QRAMARFWGKFIDEKALATRMKA----NF-------AEGKERELVTEEFFQQMKFLENELNGKDFFGGETIGFVDIVAIV 158 (222)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~----~~-------~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~ 158 (222)
+++++.+|+.+....+.+.+... .+ .+....+.....+.+.++.||++|++++|++|+++|+|||++++
T Consensus 2 ~ra~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~ 81 (118)
T cd03187 2 ERAIVEQWLEVESHQFDPPASALAFELVFKPMLGLPTDEAVVEENEEKLKKVLDVYEARLSKSKYLAGDSFTLADLSHLP 81 (118)
T ss_pred chHHHHHHHHHHHhhcchhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHcccCcccCCCCccHHHHHHHH
Confidence 46788888888777666554331 11 12223345677889999999999998999999999999999999
Q ss_pred HHHHHHhhhhhhccccCCcCccchHHHHHHHHHccccccccC
Q 038634 159 VAIWFPLTQEVLGVETFTEEKFPVLFKWIRKITEIDVVNECR 200 (222)
Q Consensus 159 ~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 200 (222)
++.++.... . +.. .+.+|+|.+|++++.++|++++++
T Consensus 82 ~~~~~~~~~-~-~~~---~~~~p~l~~~~~~~~~~p~~~~~~ 118 (118)
T cd03187 82 YLQYLMATP-F-AKL---FDSRPHVKAWWEDISARPAWKKVL 118 (118)
T ss_pred HHHHHHHcc-c-hhh---hhcCchHHHHHHHHHhCHHHHhhC
Confidence 887774211 1 111 267999999999999999998753
No 77
>cd03210 GST_C_Pi GST_C family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an incre
Probab=99.55 E-value=3.9e-14 Score=99.46 Aligned_cols=109 Identities=13% Similarity=0.183 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHhhhhhhhHhHHhhccc-hhhHHHHHHHHHHHHHHHHHhcCC---CCcccCCCCChhHHHHHHHHHHHHh
Q 038634 90 QRAMARFWGKFIDEKALATRMKANFAE-GKERELVTEEFFQQMKFLENELNG---KDFFGGETIGFVDIVAIVVAIWFPL 165 (222)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~le~~L~~---~~~l~G~~~t~aD~~l~~~l~~~~~ 165 (222)
+.++++.+++.+.+ +...+...++.. ....+.....+.+.|..||++|++ ++|++|+++|+||+++++.+.++..
T Consensus 3 e~~~vd~~~~~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~~~~l~G~~~T~ADi~l~~~~~~~~~ 81 (126)
T cd03210 3 EAALIDMVNDGVED-LRLKYVRMIYQNYEAGKDDYIKDLPEQLKPFEKLLSKNNGKGFIVGDKISFADYNLFDLLDIHLV 81 (126)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeeeCCCccHHHHHHHHHHHHHHH
Confidence 56778887776655 555555555442 334455667788999999999974 5899999999999999998888753
Q ss_pred hhhhhccccCCcCccchHHHHHHHHHccccccccCCChhh
Q 038634 166 TQEVLGVETFTEEKFPVLFKWIRKITEIDVVNECRPPREK 205 (222)
Q Consensus 166 ~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~~ 205 (222)
.. +. . ...+|+|.+|+++|.++|++++++..+..
T Consensus 82 ~~---~~-~--~~~~P~l~~~~~rv~~~p~v~~~~~~~~~ 115 (126)
T cd03210 82 LA---PG-C--LDAFPLLKAFVERLSARPKLKAYLESDAF 115 (126)
T ss_pred hC---hH-h--hhcChHHHHHHHHHHhCcHHHHHHhCcCC
Confidence 21 11 1 37799999999999999999998877653
No 78
>cd03200 GST_C_JTV1 GST_C family, JTV-1 subfamily; composed of uncharacterized proteins with similarity to the translation product of the human JTV-1 gene. Human JTV-1, a gene of unknown function, initiates within the human PMS2 gene promoter, but is transcribed from the opposite strand. PMS2 encodes a protein involved in DNA mismatch repair and is mutated in a subset of patients with hereditary nonpolyposis colon cancer. It is unknown whether the expression of JTV-1 affects that of PMS2, or vice versa, as a result of their juxtaposition. JTV-1 is up-regulated while PMS2 is down-regulated in tumor cell spheroids that show increased resistance to anticancer cytotoxic drugs compared with tumor cell monolayers indicating that suppressed DNA mismatch repair may be a mechanism for multicellular resistance to alkylating agents.
Probab=99.54 E-value=5.4e-14 Score=93.79 Aligned_cols=95 Identities=13% Similarity=0.204 Sum_probs=75.0
Q ss_pred HHHHHhhcCCCCCCCCCHHHHHHHHHHHHHhhhhhhhHhHHhhccchhhHHHHHHHHHHHHHHHHHhcCCCCcccCCCCC
Q 038634 71 LEYIDEIWNNNPILPQDPYQRAMARFWGKFIDEKALATRMKANFAEGKERELVTEEFFQQMKFLENELNGKDFFGGETIG 150 (222)
Q Consensus 71 ~~yL~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t 150 (222)
++||++..+ ++|.++.+.+.++.|+++....+.. ....++...++.+|++|++++|++|+++|
T Consensus 1 ~r~~~~~~~---~~~~~~~~~~~vd~~~d~~~~~l~~--------------~~~~~~~~~l~~le~~L~~~~fl~Gd~~t 63 (96)
T cd03200 1 ARFLYRLLG---PAPNAPNAATNIDSWVDTAIFQLAE--------------GSSKEKAAVLRALNSALGRSPWLVGSEFT 63 (96)
T ss_pred CchHHHHhc---ccCCCchHHHHHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHHHcCCCccCCCCCC
Confidence 478998833 9999999999999999976543321 12235567888999999999999999999
Q ss_pred hhHHHHHHHHHHHHhhhhhhccccCCcCccchHHHHHHHHHc
Q 038634 151 FVDIVAIVVAIWFPLTQEVLGVETFTEEKFPVLFKWIRKITE 192 (222)
Q Consensus 151 ~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~ 192 (222)
+|||++++.+.+. +.. .+.+|+|.+|++||.+
T Consensus 64 iADi~l~~~l~~~-------~~~---~~~~p~l~~w~~r~~~ 95 (96)
T cd03200 64 VADIVSWCALLQT-------GLA---SAAPANVQRWLKSCEN 95 (96)
T ss_pred HHHHHHHHHHHHc-------ccc---cccChHHHHHHHHHHh
Confidence 9999999877543 222 2679999999999976
No 79
>cd03180 GST_C_2 GST_C family, unknown subfamily 2; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.54 E-value=1.2e-13 Score=94.44 Aligned_cols=100 Identities=18% Similarity=0.278 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHhhhhhhhHhHHhhc----cc-----hhhHHHHHHHHHHHHHHHHHhcCCCCcccCCCCChhHHHHHHHH
Q 038634 90 QRAMARFWGKFIDEKALATRMKANF----AE-----GKERELVTEEFFQQMKFLENELNGKDFFGGETIGFVDIVAIVVA 160 (222)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~-----~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l 160 (222)
+++++++|+.+..+.+.+.+...+. .. ....+...+.+.+.|+.||++|++++|++|+++|+||+++++++
T Consensus 2 ~ra~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lE~~L~~~~~l~g~~~t~aDi~~~~~~ 81 (110)
T cd03180 2 ARARADRWMDWQTSTLNPAFRYAFWGLVRTPPEQRDPAAIAASLAAWAKLMAILDAQLAGRPYLAGDRFTLADIPLGCSA 81 (110)
T ss_pred chhHHHHHHHHHHhhcChHHHHHHHHHHcCCcccCCHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCCCHHHHHHHHHH
Confidence 4778899999988878877654322 11 12234567789999999999999889999999999999999987
Q ss_pred HHHHhhhhhhccccCCcCccchHHHHHHHHHccccc
Q 038634 161 IWFPLTQEVLGVETFTEEKFPVLFKWIRKITEIDVV 196 (222)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 196 (222)
.... .. +.. ..++|+|.+|++++.++|++
T Consensus 82 ~~~~---~~-~~~---~~~~p~l~~~~~~~~~~p~~ 110 (110)
T cd03180 82 YRWF---EL-PIE---RPPLPHLERWYARLRARPAF 110 (110)
T ss_pred HHHH---Hc-ccc---cccCchHHHHHHHHHhCCCC
Confidence 5432 11 222 37899999999999999985
No 80
>cd03208 GST_C_Alpha GST_C family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. The class Alpha subfamily is composed of vertebrate GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GS
Probab=99.54 E-value=7.5e-14 Score=99.31 Aligned_cols=108 Identities=17% Similarity=0.274 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHhhhhhhhHhHHhhccchhhHHHH-----HHHHHHHHHHHHHhcC--CCCcccCCCCChhHHHHHHHHHH
Q 038634 90 QRAMARFWGKFIDEKALATRMKANFAEGKERELV-----TEEFFQQMKFLENELN--GKDFFGGETIGFVDIVAIVVAIW 162 (222)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~le~~L~--~~~~l~G~~~t~aD~~l~~~l~~ 162 (222)
+.+.++++++.+.+ +...+...++..++...+. ...+...|+.||++|+ +++|++|+++|+||+++++.+.+
T Consensus 3 e~a~iD~i~~~v~D-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lE~~L~~~~~~~l~G~~~T~ADi~l~~~l~~ 81 (137)
T cd03208 3 ERALIDMYVEGTAD-LMEMILMLPFLPPEEKEAKLALIKEKAKNRYFPVFEKVLKSHGQDFLVGNKLSRADIHLLEAILM 81 (137)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeCCCCCHHHHHHHHHHHH
Confidence 56778888887766 3444444444333222221 2345789999999998 67899999999999999999988
Q ss_pred HHhhhhhhccccCCcCccchHHHHHHHHHccccccccCCChh
Q 038634 163 FPLTQEVLGVETFTEEKFPVLFKWIRKITEIDVVNECRPPRE 204 (222)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~ 204 (222)
+... .... ...||+|.+|++++.++|++++++..+.
T Consensus 82 ~~~~----~~~~--l~~~P~l~~~~~rv~~~P~vk~~~~~~~ 117 (137)
T cd03208 82 VEEL----DPSL--LSDFPLLQAFKTRISNLPTIKKFLQPGS 117 (137)
T ss_pred HHHh----chhh--hccChHHHHHHHHHHcCHHHHHHHhcCC
Confidence 7432 1111 3789999999999999999999987654
No 81
>cd03178 GST_C_Ure2p_like GST_C family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The N-terminal thioredoxin-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of GSH with a wide range of en
Probab=99.53 E-value=2.9e-14 Score=98.13 Aligned_cols=104 Identities=20% Similarity=0.258 Sum_probs=80.9
Q ss_pred HHHHHHHHHHhhhhhhhHhHHhhc----c---chhhHHHHHHHHHHHHHHHHHhcCCCCcccCCCCChhHHHHHHHHHHH
Q 038634 91 RAMARFWGKFIDEKALATRMKANF----A---EGKERELVTEEFFQQMKFLENELNGKDFFGGETIGFVDIVAIVVAIWF 163 (222)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~ 163 (222)
++++.+|+.+.+..+.+.+...+. . .+...+...+++.+.++.+|+.|++++|++|+++|+|||++++.+.+.
T Consensus 2 ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~l~~~~~~~ 81 (113)
T cd03178 2 RYEVLQWLFFQMGGLGPMFGQAGHFSRYAPEKIPYAIERYTNEAKRLYGVLDKRLAGRDYLAGDEYSIADIAIFPWVRRL 81 (113)
T ss_pred hHHHHHHHHHHHccCCCcchHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHccCCcccCCCCCeeeeeHHHHHHHH
Confidence 678889999888777766443211 1 123344567888999999999999889999999999999999988887
Q ss_pred HhhhhhhccccCCcCccchHHHHHHHHHccccccccC
Q 038634 164 PLTQEVLGVETFTEEKFPVLFKWIRKITEIDVVNECR 200 (222)
Q Consensus 164 ~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 200 (222)
... +... ...+|++.+|++++.++|++++++
T Consensus 82 ~~~----~~~~--~~~~p~l~~w~~~~~~~p~~~~~~ 112 (113)
T cd03178 82 EWI----GIDD--LDDFPNVKRWLDRIAARPAVQRGL 112 (113)
T ss_pred Hhc----cccc--hhhchHHHHHHHHHhhCHHHHHhc
Confidence 432 2222 367999999999999999999864
No 82
>cd03181 GST_C_EFB1gamma GST_C family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role
Probab=99.52 E-value=7.8e-14 Score=97.40 Aligned_cols=110 Identities=17% Similarity=0.213 Sum_probs=84.6
Q ss_pred HHHHHHHHHHhhhhhhhHhHHhhcc-------chhhHHHHHHHHHHHHHHHHHhcCCCCcccCCCCChhHHHHHHHHHHH
Q 038634 91 RAMARFWGKFIDEKALATRMKANFA-------EGKERELVTEEFFQQMKFLENELNGKDFFGGETIGFVDIVAIVVAIWF 163 (222)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~ 163 (222)
++++++|+.+++..+.+.+...+.. +....+....++.+.|+.||+.|++++|++|+++|+||+++++.+.++
T Consensus 2 ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~siaDi~l~~~~~~~ 81 (123)
T cd03181 2 EAQVLQWVSFANTELLPAVAAWFLPLLGIAPYNKKSVEAALEELDRVLGVLEERLLKRTYLVGERLTLADIFVAGALLLG 81 (123)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHHHHHHHHHccCceeccCCccHHHHHHHHHHHHH
Confidence 6778999999988888766543321 223345567888999999999999889999999999999999988876
Q ss_pred HhhhhhhccccCCcCccchHHHHHHHHHccccccccCCChh
Q 038634 164 PLTQEVLGVETFTEEKFPVLFKWIRKITEIDVVNECRPPRE 204 (222)
Q Consensus 164 ~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~~~~~ 204 (222)
..... +... ...+|++.+|++++.++|++++++.+.+
T Consensus 82 ~~~~~--~~~~--~~~~p~l~~w~~~~~~~p~~~~~~~~~~ 118 (123)
T cd03181 82 FTYVF--DKEW--RAKYPNVTRWFNTVVNQPIFKAVFGEVK 118 (123)
T ss_pred HHHHc--CHHH--HHhChHHHHHHHHHHcCHHHHHHcCCCC
Confidence 32111 1111 2579999999999999999999876643
No 83
>cd03207 GST_C_8 GST_C family, unknown subfamily 8; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.50 E-value=4.4e-14 Score=95.62 Aligned_cols=98 Identities=16% Similarity=0.167 Sum_probs=72.2
Q ss_pred HHHHhhhhhhhHhHHhhcc-chhhHHHHHHHHHHHHHHHHHhcCCCCcccCCCCChhHHHHHHHHHHHHhhhhhhccccC
Q 038634 97 WGKFIDEKALATRMKANFA-EGKERELVTEEFFQQMKFLENELNGKDFFGGETIGFVDIVAIVVAIWFPLTQEVLGVETF 175 (222)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~ 175 (222)
|+.+..+.+.+.+...+.. ..+..+.....+.+.++.||++|++++|++|+++|+|||++++.+.+... . + .
T Consensus 4 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~l~g~~~t~aDi~~~~~~~~~~~---~-~--~- 76 (103)
T cd03207 4 WLFFYAGVVEPALIAKAMGIEEPARMAGFGSYDDVLAALEQALAKGPYLLGERFTAADVLVGSPLGWGLQ---F-G--L- 76 (103)
T ss_pred eeeeccccccHHHHHHHcCCCcchhhhhhhhHHHHHHHHHHHHccCCcccCCccCHHHHHHHHHHHHHHH---c-C--C-
Confidence 3344444444443332222 22334556778999999999999988999999999999999999888742 1 2 1
Q ss_pred CcCccchHHHHHHHHHccccccccCCC
Q 038634 176 TEEKFPVLFKWIRKITEIDVVNECRPP 202 (222)
Q Consensus 176 ~~~~~p~l~~~~~~~~~~p~~~~~~~~ 202 (222)
...+|+|.+|++++.++|+++++...
T Consensus 77 -~~~~p~l~~w~~~~~~~p~~~~~~~~ 102 (103)
T cd03207 77 -LPERPAFDAYIARITDRPAFQRAAAI 102 (103)
T ss_pred -CCCChHHHHHHHHHHcCHHHHHHhcc
Confidence 26799999999999999999987653
No 84
>cd03183 GST_C_Theta GST_C family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenatio
Probab=99.48 E-value=2.8e-13 Score=95.09 Aligned_cols=104 Identities=19% Similarity=0.254 Sum_probs=75.1
Q ss_pred HHHHHHHHHHhhhhhhhHhHHh---------hcc---chhhHHHHHHHHHHHHHHHHHhc-CCCCcccCCCCChhHHHHH
Q 038634 91 RAMARFWGKFIDEKALATRMKA---------NFA---EGKERELVTEEFFQQMKFLENEL-NGKDFFGGETIGFVDIVAI 157 (222)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~---------~~~---~~~~~~~~~~~~~~~l~~le~~L-~~~~~l~G~~~t~aD~~l~ 157 (222)
++++.+|+.+..+.+.+.+... +.. .++..+...+.+.+.+..+|++| ++++|++|+++|+|||+++
T Consensus 2 ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~l~Gd~~t~ADi~l~ 81 (126)
T cd03183 2 RARVDEYLAWQHTNLRLGCAKYFWQKVLLPLLGGKPVSPEKVKKAEENLEESLDLLENYFLKDKPFLAGDEISIADLSAV 81 (126)
T ss_pred cccHHHHHHHHHhhhHhhHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHH
Confidence 4567778877766665443221 111 23334456678899999999974 5578999999999999999
Q ss_pred HHHHHHHhhhhhhccccCCcCccchHHHHHHHHHc--cccccccC
Q 038634 158 VVAIWFPLTQEVLGVETFTEEKFPVLFKWIRKITE--IDVVNECR 200 (222)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~--~p~~~~~~ 200 (222)
+.+.+.... +.+. .+.+|+|.+|++++.+ +|+++++.
T Consensus 82 ~~~~~~~~~----~~~~--~~~~p~l~~w~~~~~~~~~p~~~~~~ 120 (126)
T cd03183 82 CEIMQPEAA----GYDV--FEGRPKLAAWRKRVKEAGNPLFDEAH 120 (126)
T ss_pred HHHHHHHhc----CCcc--cccCchHHHHHHHHHHhcchhHHHHH
Confidence 988666422 3332 3779999999999999 99998743
No 85
>cd03195 GST_C_4 GST_C family, unknown subfamily 4; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.46 E-value=6.2e-13 Score=91.64 Aligned_cols=102 Identities=20% Similarity=0.131 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHhhhhhhhHhHHhh----ccc---hhhHHHHHHHHHHHHHHHHHhcC-CCCcccCCCCChhHHHHHHHH
Q 038634 89 YQRAMARFWGKFIDEKALATRMKAN----FAE---GKERELVTEEFFQQMKFLENELN-GKDFFGGETIGFVDIVAIVVA 160 (222)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~~~~~l~~le~~L~-~~~~l~G~~~t~aD~~l~~~l 160 (222)
.+++++..|+.++++.+.+...... +.. ....+.....+.+.+..+|..|+ +++||+| ++|+||+++++++
T Consensus 2 ~~ra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~l~G-~fSiAD~~l~~~~ 80 (114)
T cd03195 2 RQRARARQVQAWLRSDLLPIRVERSTEVVFAGAKAEPLSEAAQAAAEKLIAVAEALLPPGAANLFG-EWCIADTDLALML 80 (114)
T ss_pred HhhHHHHHHHHHHHhhHHHHHHhCCccceecCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCCcccC-CccHHHHHHHHHH
Confidence 4689999999999998887532211 111 12335667788899999999995 4589999 5999999999999
Q ss_pred HHHHhhhhhhccccCCcCccchHHHHHHHHHccccccccC
Q 038634 161 IWFPLTQEVLGVETFTEEKFPVLFKWIRKITEIDVVNECR 200 (222)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 200 (222)
.++... |.++ . |++.+|++||.+||++++.+
T Consensus 81 ~~~~~~----g~~l---~--p~l~ay~~r~~~rPa~~~~~ 111 (114)
T cd03195 81 NRLVLN----GDPV---P--ERLRDYARRQWQRPSVQAWL 111 (114)
T ss_pred HHHHHc----CCCC---C--HHHHHHHHHHHCCHHHHHHH
Confidence 888532 5554 3 99999999999999999865
No 86
>cd03206 GST_C_7 GST_C family, unknown subfamily 7; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.45 E-value=3.9e-13 Score=90.46 Aligned_cols=71 Identities=23% Similarity=0.524 Sum_probs=58.9
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCcccCCCCChhHHHHHHHHHHHHhhhhhhccccCCcCccchHHHHHHHHHccccc
Q 038634 119 ERELVTEEFFQQMKFLENELNGKDFFGGETIGFVDIVAIVVAIWFPLTQEVLGVETFTEEKFPVLFKWIRKITEIDVV 196 (222)
Q Consensus 119 ~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 196 (222)
..+....++.+.++.+|+.|++++|++|+++|+||+++++++.+.. .. +.. .+++|+|.+|++++.++|++
T Consensus 30 ~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aDi~~~~~~~~~~---~~-~~~---~~~~p~l~~~~~~~~~~p~~ 100 (100)
T cd03206 30 DKETAIARAHRLLRLLEEHLAGRDWLAGDRPTIADVAVYPYVALAP---EG-GVD---LEDYPAIRRWLARIEALPGF 100 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCccCCCCCCHHHHHHHHHHHHHh---cc-CCC---hhhCcHHHHHHHHHHhCcCC
Confidence 3456678899999999999999999999999999999999886542 11 222 37799999999999999975
No 87
>PF00043 GST_C: Glutathione S-transferase, C-terminal domain; InterPro: IPR004046 In eukaryotes, glutathione S-transferases (GSTs) participate in the detoxification of reactive electrophillic compounds by catalysing their conjugation to glutathione. The GST domain is also found in S-crystallins from squid, and proteins with no known GST activity, such as eukaryotic elongation factors 1-gamma and the HSP26 family of stress-related proteins, which include auxin-regulated proteins in plants and stringent starvation proteins in Escherichia coli. The major lens polypeptide of cephalopods is also a GST [, , , ]. Bacterial GSTs of known function often have a specific, growth-supporting role in biodegradative metabolism: epoxide ring opening and tetrachlorohydroquinone reductive dehalogenation are two examples of the reactions catalysed by these bacterial GSTs. Some regulatory proteins, like the stringent starvation proteins, also belong to the GST family [, ]. GST seems to be absent from Archaea in which gamma-glutamylcysteine substitute to glutathione as major thiol. Glutathione S-transferases form homodimers, but in eukaryotes can also form heterodimers of the A1 and A2 or YC1 and YC2 subunits. The homodimeric enzymes display a conserved structural fold. Each monomer is composed of a distinct N-terminal sub-domain, which adopts the thioredoxin fold, and a C-terminal all-helical sub-domain. This entry is the C-terminal domain.; PDB: 3UAP_A 3UAR_A 3QAV_A 3QAW_A 1Y6E_A 1U88_B 4AI6_B 1UA5_A 4AKH_A 3QMZ_S ....
Probab=99.44 E-value=9.3e-13 Score=87.66 Aligned_cols=71 Identities=23% Similarity=0.363 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCcccCCCCChhHHHHHHHHHHHHhhhhhhccccCCcCccchHHHHHHHHHccc
Q 038634 119 ERELVTEEFFQQMKFLENELNGKDFFGGETIGFVDIVAIVVAIWFPLTQEVLGVETFTEEKFPVLFKWIRKITEID 194 (222)
Q Consensus 119 ~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p 194 (222)
..+.....+.+.|..+|+.|++++|++|+++|+||+++++.+.++...... .. .++||+|.+|+++|.+||
T Consensus 25 ~~~~~~~~~~~~l~~le~~l~~~~~l~G~~~t~ADi~~~~~~~~~~~~~~~----~~-~~~~P~l~~w~~~~~~~P 95 (95)
T PF00043_consen 25 MVEEARAKVPRYLEVLEKRLKGGPYLVGDKLTIADIALFPMLDWLERLGPD----FL-FEKFPKLKKWYERMFARP 95 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSSSSBSS-CHHHHHHHHHHHHHHHHTTT----TT-HTTSHHHHHHHHHHHTSH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCeeeccCCchhHHHHHHHHHHHHHhCCC----cc-cccCHHHHHHHHHHHcCC
Confidence 445667888999999999999999999999999999999999988644332 20 278999999999999987
No 88
>PF13410 GST_C_2: Glutathione S-transferase, C-terminal domain; PDB: 4DEJ_H 3IC8_A 2JL4_A 2V6K_B 3CBU_B 1JLW_B 3F6D_B 3G7I_A 3F63_A 3G7J_B ....
Probab=99.42 E-value=8.9e-13 Score=82.47 Aligned_cols=67 Identities=18% Similarity=0.282 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCcccCCCCChhHHHHHHHHHHHHhhhhhhccccCCcCccchHHHHHHH
Q 038634 119 ERELVTEEFFQQMKFLENELNGKDFFGGETIGFVDIVAIVVAIWFPLTQEVLGVETFTEEKFPVLFKWIRK 189 (222)
Q Consensus 119 ~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~ 189 (222)
..++..+.+.+.|+.||++|++++|++|++||+||+++++.+.++..... +.++ .+.+|+|.+|++|
T Consensus 3 ~~~~~~~~~~~~l~~le~~L~~~~fl~G~~~s~aD~~l~~~l~~~~~~~~--~~~~--~~~~p~l~~w~~r 69 (69)
T PF13410_consen 3 AVERARAQLEAALDALEDHLADGPFLFGDRPSLADIALAPFLWRLRFVGP--DFDL--LEAYPNLRAWYER 69 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSBTTBSS--HHHHHHHHHHHHHHHCTH--TCCH--HTTSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHHhCc--CcCc--cccCHHHHHHHhC
Confidence 45677889999999999999999999999999999999999999975533 2233 4889999999986
No 89
>KOG3028 consensus Translocase of outer mitochondrial membrane complex, subunit TOM37/Metaxin 1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=3.5e-11 Score=93.58 Aligned_cols=172 Identities=15% Similarity=0.200 Sum_probs=123.1
Q ss_pred CChHHHHHHHHHHHcCCCceEEeCCCCCCchhhhhhCCCCCcccEEE-eCCeeeeehHHHHHHHHhhcCCCCCCCCC-HH
Q 038634 12 SSPFSRRIELALKLKGVPFEYIEEDLSNKSPELLKYNPVHKKIPVLV-HNSKPIAESQVILEYIDEIWNNNPILPQD-PY 89 (222)
Q Consensus 12 ~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~-~~g~~i~es~~I~~yL~~~~~~~~l~p~~-~~ 89 (222)
.++.|.++.+.++.++-|.+++..+... ..|. |++|+|+ ++|+.+++-..|..+|.....+..+-+.. ..
T Consensus 16 id~~sL~~l~y~kl~~~~l~v~~ssN~~-------~s~s-g~LP~l~~~ng~~va~~~~iv~~L~k~~~ky~~d~dl~~k 87 (313)
T KOG3028|consen 16 IDPDSLAALIYLKLAGAPLKVVVSSNPW-------RSPS-GKLPYLITDNGTKVAGPVKIVQFLKKNTKKYNLDADLSAK 87 (313)
T ss_pred cChhHHHHHHHHHHhCCCceeEeecCCC-------CCCC-CCCCeEEecCCceeccHHHHHHHHHHhcccCCcCccHHHH
Confidence 5788999999999999777766554322 2566 8999999 46799999999999999853332233322 55
Q ss_pred HHHHHHHHHHHhhhhhhhHhHHhhc------------------------------------------c-chhhHHHHHHH
Q 038634 90 QRAMARFWGKFIDEKALATRMKANF------------------------------------------A-EGKERELVTEE 126 (222)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------~-~~~~~~~~~~~ 126 (222)
+.+....|+.+.++.+.+.+.+.++ + ..+..++....
T Consensus 88 q~a~~~a~~sll~~~l~~a~~~t~~v~~~Ny~e~Tkk~yak~l~fP~n~~~p~~l~~qAk~rl~l~~g~~~~~e~~i~~~ 167 (313)
T KOG3028|consen 88 QLADTLAFMSLLEENLEPALLYTFWVDTENYNEVTKKWYAKALPFPLNYILPGKLQRQAKERLQLTLGELTEREDQIYKD 167 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHhHHHHHhcCCCchhhcchhhhHHHHHHHHHHHhCCchhhHHHHHHH
Confidence 6777788888888877776655332 1 11123444566
Q ss_pred HHHHHHHHHHhcCCCCcccCCCCChhHHHHHHHHHHHHhhhhhhcccc--CCcCccchHHHHHHHHHcc
Q 038634 127 FFQQMKFLENELNGKDFFGGETIGFVDIVAIVVAIWFPLTQEVLGVET--FTEEKFPVLFKWIRKITEI 193 (222)
Q Consensus 127 ~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~--~~~~~~p~l~~~~~~~~~~ 193 (222)
..+++..|.+.|++++|++||+||.-|+.+++.+..+....- +... .....++||.+++++++..
T Consensus 168 Aska~~~LS~~Lgs~kffFgd~psslDa~lfs~la~~~~~~L--p~~~Lq~~l~~~~NL~~~~~~i~s~ 234 (313)
T KOG3028|consen 168 ASKALNLLSTLLGSKKFFFGDKPSSLDALLFSYLAILLQVAL--PNDSLQVHLLAHKNLVRYVERIRSL 234 (313)
T ss_pred HHHHHHHHHHHhcCceEeeCCCCchHHHHHHHHHHHHHhccC--CchhHHHHHHhcchHHHHHHHHHHH
Confidence 788999999999999999999999999999998887421110 1000 0023489999999999874
No 90
>KOG3027 consensus Mitochondrial outer membrane protein Metaxin 2, Metaxin 1-binding protein [Cell wall/membrane/envelope biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=2.2e-11 Score=88.91 Aligned_cols=171 Identities=16% Similarity=0.241 Sum_probs=122.4
Q ss_pred CChHHHHHHHHHHHcCCCceEEeCCCCCCchhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHhhcCCCCCCC-CCHHH
Q 038634 12 SSPFSRRIELALKLKGVPFEYIEEDLSNKSPELLKYNPVHKKIPVLVHNSKPIAESQVILEYIDEIWNNNPILP-QDPYQ 90 (222)
Q Consensus 12 ~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~i~es~~I~~yL~~~~~~~~l~p-~~~~~ 90 (222)
...-|..|...|+.+++||.++..+- .+| ++|. |+||.|..|.++++|-.+|..+...+-- .|.. -+..+
T Consensus 33 d~ascLAVqtfLrMcnLPf~v~~~~N----aef--mSP~-G~vPllr~g~~~~aef~pIV~fVeak~~--~l~s~lsE~q 103 (257)
T KOG3027|consen 33 DNASCLAVQTFLRMCNLPFNVRQRAN----AEF--MSPG-GKVPLLRIGKTLFAEFEPIVDFVEAKGV--TLTSWLSEDQ 103 (257)
T ss_pred cchhHHHHHHHHHHcCCCceeeecCC----ccc--cCCC-CCCceeeecchhhhhhhHHHHHHHHhcc--chhhhhhhHH
Confidence 33458899999999999999887642 333 5786 8999999999999999999999998753 2221 24456
Q ss_pred HHHHHHHHHHhhhhhhhHhHHhhc------------------------------------------cchhhHHHHHHHHH
Q 038634 91 RAMARFWGKFIDEKALATRMKANF------------------------------------------AEGKERELVTEEFF 128 (222)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------~~~~~~~~~~~~~~ 128 (222)
++.++..++.++..+...=....+ -.....++..++..
T Consensus 104 kadmra~vslVen~~t~aEl~~s~~de~ty~~vT~~R~gs~ypWPLs~i~~f~Krr~~~r~lk~~~W~~~~~DqVie~vd 183 (257)
T KOG3027|consen 104 KADMRAYVSLVENLLTTAELYVSWNDEETYDEVTALRYGSVYPWPLSHILPFVKRRKALRELKVYDWDDKTMDQVIEQVD 183 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhccCCCCCCcHHHHHHHHHHHHHHHHHhhcCcccccHHHHHHHHH
Confidence 777777776666533221111110 01222355677888
Q ss_pred HHHHHHHHhcCCCCcccCCCCChhHHHHHHHHHHHHhhhhh-hc-cccCCcCccchHHHHHHHHHcc
Q 038634 129 QQMKFLENELNGKDFFGGETIGFVDIVAIVVAIWFPLTQEV-LG-VETFTEEKFPVLFKWIRKITEI 193 (222)
Q Consensus 129 ~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~-~~-~~~~~~~~~p~l~~~~~~~~~~ 193 (222)
++.+.|+.+|+.++|+.|+.||-.|..+|+.+..+.+..-. .. ..+ ..+|+||.++++|+.+.
T Consensus 184 kc~~aLsa~L~~q~yf~g~~P~elDAlvFGHlytilTt~Lpn~ela~~--lkkys~LlefcrrIeq~ 248 (257)
T KOG3027|consen 184 KCCRALSAQLGSQPYFTGDQPTELDALVFGHLYTILTTRLPNMELANI--LKKYSNLLEFCRRIEQQ 248 (257)
T ss_pred HHHHHHHHHhcCCCccCCCCccHHHHHHHhhhHHhhhhcCCcHHHHHH--HHHhHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988877532111 00 111 37899999999999873
No 91
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.37 E-value=2.3e-12 Score=80.75 Aligned_cols=60 Identities=17% Similarity=0.258 Sum_probs=49.7
Q ss_pred cCChHHHHHHHHHHHcCCCceEEeCCCCCCchhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHhh
Q 038634 11 WSSPFSRRIELALKLKGVPFEYIEEDLSNKSPELLKYNPVHKKIPVLVHNSKPIAESQVILEYIDEI 77 (222)
Q Consensus 11 ~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~i~es~~I~~yL~~~ 77 (222)
+.+++|.+++++|++.|+||+.+.... .+ ..+|. |+||+|++||.+|+||.+|+.||+++
T Consensus 15 ~~~~~~~kv~~~L~elglpye~~~~~~----~~--~~~P~-GkVP~L~~dg~vI~eS~aIl~yL~~~ 74 (74)
T cd03079 15 PDNASCLAVQTFLKMCNLPFNVRCRAN----AE--FMSPS-GKVPFIRVGNQIVSEFGPIVQFVEAK 74 (74)
T ss_pred CCCCCHHHHHHHHHHcCCCcEEEecCC----cc--ccCCC-CcccEEEECCEEEeCHHHHHHHHhcC
Confidence 456789999999999999999884321 11 15777 89999999999999999999999863
No 92
>cd03204 GST_C_GDAP1 GST_C family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal thioredoxin-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=99.37 E-value=3.7e-12 Score=86.64 Aligned_cols=76 Identities=17% Similarity=0.216 Sum_probs=60.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHhcCCC----------CcccCCCCChhHHHHHHHHHHHHhhhhhhccccC--CcCccchHH
Q 038634 117 GKERELVTEEFFQQMKFLENELNGK----------DFFGGETIGFVDIVAIVVAIWFPLTQEVLGVETF--TEEKFPVLF 184 (222)
Q Consensus 117 ~~~~~~~~~~~~~~l~~le~~L~~~----------~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~--~~~~~p~l~ 184 (222)
.+..+.....+...|+.||++|.++ +|++|+++|+|||++++.+.++... +.+.. ...+||+|.
T Consensus 24 ~~~i~~~~~~l~~~l~~LE~~L~~~~~~~~~~~~~~yL~Gd~~TlADi~l~~~l~~~~~~----~~~~~~~~~~~~P~l~ 99 (111)
T cd03204 24 VEYLKKILDELEMVLDQVEQELQRRKEETEEQKCQLWLCGDTFTLADISLGVTLHRLKFL----GLSRRYWGNGKRPNLE 99 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcccccccCCCccCCCCCCHHHHHHHHHHHHHHHc----CccccccccccChHHH
Confidence 3445667888999999999999754 5999999999999999999887532 32220 025799999
Q ss_pred HHHHHHHccccc
Q 038634 185 KWIRKITEIDVV 196 (222)
Q Consensus 185 ~~~~~~~~~p~~ 196 (222)
+|++||.+||+|
T Consensus 100 ~w~~rv~aRpsf 111 (111)
T cd03204 100 AYFERVLQRESF 111 (111)
T ss_pred HHHHHHHcCCCC
Confidence 999999999986
No 93
>cd03179 GST_C_1 GST_C family, unknown subfamily 1; composed of uncharacterized bacterial proteins, with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.34 E-value=4.7e-12 Score=85.77 Aligned_cols=95 Identities=20% Similarity=0.328 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHhhhhhhhHhHHhhc-------c--chhhHHHHHHHHHHHHHHHHHhcCCCCcccCCCCChhHHHHHHHH
Q 038634 90 QRAMARFWGKFIDEKALATRMKANF-------A--EGKERELVTEEFFQQMKFLENELNGKDFFGGETIGFVDIVAIVVA 160 (222)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~-------~--~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l 160 (222)
+++++++|+.+.++.+.+.+..... . ..+..+....++.+.++.||+.|++++|++|+++|+||+++++.+
T Consensus 2 ~ra~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~~l~g~~~slaDi~~~~~~ 81 (105)
T cd03179 2 ERAQVLRWLFFEQYSHEPYIATLRFLRVYLGLGEADAEVLAFLRERGHAALAVLEAHLAGRDFLVGDALTIADIALAAYT 81 (105)
T ss_pred cHHHHHHHHHHhhcccCccceeeeeeEeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHccCccccCCCCCHHHHHHHHHH
Confidence 4788999999887777765543211 1 233445678889999999999998889999999999999999999
Q ss_pred HHHHhhhhhhccccCCcCccchHHHHHHHHH
Q 038634 161 IWFPLTQEVLGVETFTEEKFPVLFKWIRKIT 191 (222)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~ 191 (222)
.++.. . +.+ ..++|+|.+|++++.
T Consensus 82 ~~~~~---~-~~~---~~~~p~l~~~~~~~~ 105 (105)
T cd03179 82 HVADE---G-GFD---LADYPAIRAWLARIE 105 (105)
T ss_pred Hhccc---c-CCC---hHhCccHHHHHHhhC
Confidence 88742 1 333 267999999999873
No 94
>PF14497 GST_C_3: Glutathione S-transferase, C-terminal domain; PDB: 3AY8_A 2UZ8_B 1V2A_C 2HNL_A 2YV9_B 3H1N_A 3FR6_A 1Q4J_B 1PA3_B 1OKT_B ....
Probab=99.32 E-value=3.9e-12 Score=85.43 Aligned_cols=94 Identities=23% Similarity=0.403 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHhhhhhhhHhHHhhccchhhHHHHHHHHHHHHHHHHHhcCCCC--cccCCCCChhHHHHHHHHHHHHhh
Q 038634 89 YQRAMARFWGKFIDEKALATRMKANFAEGKERELVTEEFFQQMKFLENELNGKD--FFGGETIGFVDIVAIVVAIWFPLT 166 (222)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L~~~~--~l~G~~~t~aD~~l~~~l~~~~~~ 166 (222)
..++.+++|+++.. ............+...+.....+.+.++.+|++|++++ |++|++||+||+++|+.+..+..
T Consensus 4 ~~~a~i~~W~~f~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~L~~~~~~~l~G~~~T~AD~~v~~~l~~~~~- 80 (99)
T PF14497_consen 4 YWRALIDRWLDFSV--AFRRRKARLEKDEASGDFSREELPKALKILEKHLAERGGDFLVGDKPTLADIAVFGFLASLRW- 80 (99)
T ss_dssp TTHHHHHHHHH-GH--CCHCCHCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHTSSSSSSSSS--HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhccc--hhhhHHHHHHHhhhhHHhhHHHHHHHHHHHHHHHHcCCCeeecCCCCCHHHHHHHHHHHHHhh-
Confidence 34666778888441 00000000011233445667889999999999998766 99999999999999998866642
Q ss_pred hhhhccccCCcCccchHHHHHHHHHc
Q 038634 167 QEVLGVETFTEEKFPVLFKWIRKITE 192 (222)
Q Consensus 167 ~~~~~~~~~~~~~~p~l~~~~~~~~~ 192 (222)
. .+ .+++|+|.+|++||++
T Consensus 81 ----~-~~--~~~~p~L~~w~~ri~~ 99 (99)
T PF14497_consen 81 ----A-DF--PKDYPNLVRWYERIEE 99 (99)
T ss_dssp ----C-HH--TTTCHHHHHHHHHHHT
T ss_pred ----c-cc--ccccHHHHHHHHhhcC
Confidence 2 12 1579999999999974
No 95
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=99.32 E-value=8.6e-12 Score=80.09 Aligned_cols=72 Identities=24% Similarity=0.323 Sum_probs=63.5
Q ss_pred cceEEEeecCChHHHHHHHHHHHcCCCceEEeCCCCCCchhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHH
Q 038634 3 EEVKLYGTWSSPFSRRIELALKLKGVPFEYIEEDLSNKSPELLKYNPVHKKIPVLVHNSKPIAESQVILEYID 75 (222)
Q Consensus 3 ~~~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~i~es~~I~~yL~ 75 (222)
++++||+.++||+|.+++.+|+..|++|+.+.++-.....++...++. .++|++..||..|.++..|.+||+
T Consensus 8 ~~V~ly~~~~Cp~C~~ak~~L~~~gi~y~~idi~~~~~~~~~~~~~g~-~~vP~i~i~g~~igG~~~l~~~l~ 79 (79)
T TIGR02190 8 ESVVVFTKPGCPFCAKAKATLKEKGYDFEEIPLGNDARGRSLRAVTGA-TTVPQVFIGGKLIGGSDELEAYLA 79 (79)
T ss_pred CCEEEEECCCCHhHHHHHHHHHHcCCCcEEEECCCChHHHHHHHHHCC-CCcCeEEECCEEEcCHHHHHHHhC
Confidence 469999999999999999999999999999988755444566667776 699999999999999999999984
No 96
>cd00299 GST_C_family Glutathione S-transferase (GST) family, C-terminal alpha helical domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an activ
Probab=99.30 E-value=1.1e-11 Score=82.83 Aligned_cols=92 Identities=22% Similarity=0.412 Sum_probs=68.2
Q ss_pred HHHHHHhhhhhhhHhHHhhcc-------chhhHHHHHHHHHHHHHHHHHhcCCCCcccCCCCChhHHHHHHHHHHHHhhh
Q 038634 95 RFWGKFIDEKALATRMKANFA-------EGKERELVTEEFFQQMKFLENELNGKDFFGGETIGFVDIVAIVVAIWFPLTQ 167 (222)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~ 167 (222)
+.|+.+.+..+.+.+...+.. .++..+...+.+.+.++.||++|++++|++|+++|+||+++++++.++....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~t~aDi~~~~~l~~~~~~~ 81 (100)
T cd00299 2 RAWEEWADTTLEPAARRLLLLAFVGPEVDEAALEEAREELAAALAALEKLLAGRPYLAGDRFSLADIALAPVLARLDLLG 81 (100)
T ss_pred hHHHHHHHhhcCCcccceeeeeccCCCCCHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCcCHHHHHHHHHHHHHHHhh
Confidence 356666666565555444332 2445566778899999999999999999999999999999999999886433
Q ss_pred hhhccccCCcCccchHHHHHHHH
Q 038634 168 EVLGVETFTEEKFPVLFKWIRKI 190 (222)
Q Consensus 168 ~~~~~~~~~~~~~p~l~~~~~~~ 190 (222)
...+ + .+.+|++.+|++++
T Consensus 82 ~~~~--~--~~~~p~l~~~~~~~ 100 (100)
T cd00299 82 PLLG--L--LDEYPRLAAWYDRL 100 (100)
T ss_pred hhhh--h--hccCccHHHHHHhC
Confidence 2211 2 36799999999875
No 97
>cd03192 GST_C_Sigma_like GST_C family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi, and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition
Probab=99.29 E-value=2.4e-11 Score=82.27 Aligned_cols=95 Identities=19% Similarity=0.227 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHhhhhhhhHhHHhhccc------hhhHHHHHHHHHHHHHHHHHhcCC--CCcccCCCCChhHHHHHHHHH
Q 038634 90 QRAMARFWGKFIDEKALATRMKANFAE------GKERELVTEEFFQQMKFLENELNG--KDFFGGETIGFVDIVAIVVAI 161 (222)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~le~~L~~--~~~l~G~~~t~aD~~l~~~l~ 161 (222)
++.+++.+++.+++ +...+...+++. .+..+...+.+.+.++.||++|++ ++|++|+++|+||+++++.+.
T Consensus 2 e~~~v~~~~~~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~l~~~~~~~~~G~~~s~aDi~l~~~~~ 80 (104)
T cd03192 2 EAARVDALVDTIAD-LRAEFAKYFYEKDGEEKKEKKKEFLKEAIPKYLKKLEKILKENGGGYLVGDKLTWADLVVFDVLD 80 (104)
T ss_pred hHHHHHHHHHHHHH-HHHHHHHHhhcCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCeeeCCCccHHHHHHHHHHH
Confidence 46788888888655 666666666642 344456678889999999999987 899999999999999999998
Q ss_pred HHHhhhhhhccccCCcCccchHHHHHHHH
Q 038634 162 WFPLTQEVLGVETFTEEKFPVLFKWIRKI 190 (222)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~p~l~~~~~~~ 190 (222)
++..... ... ...||+|.+|++++
T Consensus 81 ~~~~~~~---~~~--~~~~p~l~~~~~~~ 104 (104)
T cd03192 81 YLLYLDP---KLL--LKKYPKLKALRERV 104 (104)
T ss_pred HHHhhCc---hhh--HHhChhHHHHHHhC
Confidence 8853321 111 36799999999875
No 98
>PRK10638 glutaredoxin 3; Provisional
Probab=99.28 E-value=2.5e-11 Score=78.76 Aligned_cols=73 Identities=26% Similarity=0.394 Sum_probs=64.3
Q ss_pred CCcceEEEeecCChHHHHHHHHHHHcCCCceEEeCCCCC-CchhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHH
Q 038634 1 MAEEVKLYGTWSSPFSRRIELALKLKGVPFEYIEEDLSN-KSPELLKYNPVHKKIPVLVHNSKPIAESQVILEYID 75 (222)
Q Consensus 1 M~~~~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~g~vP~L~~~g~~i~es~~I~~yL~ 75 (222)
|+ ++++|+.+.||+|++++.+|..+|++|+.+.++... ...++.+.++. +++|++..+|..|.+...+..+-.
T Consensus 1 m~-~v~ly~~~~Cp~C~~a~~~L~~~gi~y~~~dv~~~~~~~~~l~~~~g~-~~vP~i~~~g~~igG~~~~~~~~~ 74 (83)
T PRK10638 1 MA-NVEIYTKATCPFCHRAKALLNSKGVSFQEIPIDGDAAKREEMIKRSGR-TTVPQIFIDAQHIGGCDDLYALDA 74 (83)
T ss_pred CC-cEEEEECCCChhHHHHHHHHHHcCCCcEEEECCCCHHHHHHHHHHhCC-CCcCEEEECCEEEeCHHHHHHHHH
Confidence 77 899999999999999999999999999999987543 45678889998 799999999999999988877643
No 99
>cd03202 GST_C_etherase_LigE GST_C family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=99.25 E-value=3.1e-11 Score=84.42 Aligned_cols=68 Identities=19% Similarity=0.389 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCcccCCCCChhHHHHHHHHHHHHhhhhhhccccCCcCccchHHHHHHHHHc
Q 038634 120 RELVTEEFFQQMKFLENELNGKDFFGGETIGFVDIVAIVVAIWFPLTQEVLGVETFTEEKFPVLFKWIRKITE 192 (222)
Q Consensus 120 ~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~ 192 (222)
.+.....+.+.|+.+|++|++++|+.|+++|+||+++++.+.+.... .+.++ .+.+|+|.+|++||.+
T Consensus 56 ~~~~~~~~~~~l~~l~~~L~~~~fl~Gd~~t~AD~~l~~~l~~~~~~---~~~~~--~~~~p~l~~W~~r~~~ 123 (124)
T cd03202 56 REAALANFRAALEPLRATLKGQPFLGGAAPNYADYIVFGGFQWARIV---SPFPL--LEEDDPVYDWFERCLD 123 (124)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCccCCCCCchhHHHHHHHHHHHHHc---Ccccc--cccCChHHHHHHHHhc
Confidence 34667888999999999999999999999999999999999888532 23443 3789999999999986
No 100
>cd03194 GST_C_3 GST_C family, unknown subfamily 3; composed of uncharacterized proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=99.25 E-value=7.3e-11 Score=81.27 Aligned_cols=72 Identities=17% Similarity=0.219 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHhc---CCCCcccCCCCChhHHHHHHHHHHHHhhhhhhccccCCcCccchHHHHHHHHHccccc
Q 038634 120 RELVTEEFFQQMKFLENEL---NGKDFFGGETIGFVDIVAIVVAIWFPLTQEVLGVETFTEEKFPVLFKWIRKITEIDVV 196 (222)
Q Consensus 120 ~~~~~~~~~~~l~~le~~L---~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 196 (222)
.+.....+.+.++.+|..+ ++++|++|+ +|+||+++++++.+... . +.+. .|+|.+|++++.++|++
T Consensus 39 ~~~~~~~~~~~~~~le~~l~~~~~~~yl~Gd-~T~ADi~l~~~~~~~~~---~-~~~~-----~P~l~~~~~rv~~rPsv 108 (114)
T cd03194 39 SEAVQADIARIEAIWAECLARFQGGPFLFGD-FSIADAFFAPVVTRFRT---Y-GLPL-----SPAAQAYVDALLAHPAM 108 (114)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC-CcHHHHHHHHHHHHHHH---c-CCCC-----CHHHHHHHHHHHCCHHH
Confidence 3455556666666666666 467899999 99999999998888742 2 4332 39999999999999999
Q ss_pred cccCC
Q 038634 197 NECRP 201 (222)
Q Consensus 197 ~~~~~ 201 (222)
++++.
T Consensus 109 ~~~~~ 113 (114)
T cd03194 109 QEWIA 113 (114)
T ss_pred HHHHh
Confidence 98753
No 101
>cd03193 GST_C_Metaxin GST_C family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities. Other members are the cadmium-inducible
Probab=99.22 E-value=4.1e-11 Score=78.61 Aligned_cols=69 Identities=16% Similarity=0.170 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcccCCCCChhHHHHHHHHHHHHhhhhhhc-cccCCcCccchHHHHHHHHH
Q 038634 122 LVTEEFFQQMKFLENELNGKDFFGGETIGFVDIVAIVVAIWFPLTQEVLG-VETFTEEKFPVLFKWIRKIT 191 (222)
Q Consensus 122 ~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~-~~~~~~~~~p~l~~~~~~~~ 191 (222)
...+++.+.++.+|+.|++++|++|+++|+|||++++.+.++.......+ ... ..+.+|+|.+|++|+.
T Consensus 19 ~~~~~~~~~l~~le~~L~~~~yl~Gd~~t~aDi~l~~~l~~~~~~~~~~~~~~~-~~~~~p~l~~~~~r~~ 88 (88)
T cd03193 19 EIYSLAKKDLKALSDLLGDKKFFFGDKPTSLDATVFGHLASILYAPLPNSALQL-ILKEYPNLVEYCERIR 88 (88)
T ss_pred HHHHHHHHHHHHHHHHhCCCCccCCCCCCHHHHHHHHHHHHHHhcCCCChHHHH-HHHhCcHHHHHHHHhC
Confidence 55678899999999999999999999999999999999888743211000 000 1267999999999974
No 102
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=99.19 E-value=1.7e-10 Score=72.75 Aligned_cols=71 Identities=21% Similarity=0.309 Sum_probs=60.8
Q ss_pred ceEEEeecCChHHHHHHHHHHHcCCCceEEeCCCCCCchhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHH
Q 038634 4 EVKLYGTWSSPFSRRIELALKLKGVPFEYIEEDLSNKSPELLKYNPVHKKIPVLVHNSKPIAESQVILEYID 75 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~i~es~~I~~yL~ 75 (222)
+++||+.++||+|.+++-+|...|++|+.+.++-......+...... .++|++..||+.+.++..|.+||+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~~~~~~v~~~~~~~~~~~~~g~-~~vP~ifi~g~~igg~~~l~~~l~ 72 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGISYEEIPLGKDITGRSLRAVTGA-MTVPQVFIDGELIGGSDDLEKYFA 72 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCCcEEEECCCChhHHHHHHHhCC-CCcCeEEECCEEEeCHHHHHHHhC
Confidence 68999999999999999999999999999988754433445555665 689999999999999999999974
No 103
>cd03078 GST_N_Metaxin1_like GST_N family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins including Tom37 from fungi. Mammalian metaxin (or metaxin 1) and the fungal protein Tom37 are components of preprotein import complexes of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals.
Probab=99.12 E-value=5.6e-10 Score=70.30 Aligned_cols=58 Identities=22% Similarity=0.414 Sum_probs=49.8
Q ss_pred CChHHHHHHHHHHHcCCCceEEeCCCCCCchhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHhh
Q 038634 12 SSPFSRRIELALKLKGVPFEYIEEDLSNKSPELLKYNPVHKKIPVLVHNSKPIAESQVILEYIDEI 77 (222)
Q Consensus 12 ~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~i~es~~I~~yL~~~ 77 (222)
.||+|.++.+.|+..|++|+.+..... ..+|. |++|+|+++|+.|.||..|++||.++
T Consensus 15 ~sp~clk~~~~Lr~~~~~~~v~~~~n~-------~~sp~-gkLP~l~~~~~~i~d~~~Ii~~L~~~ 72 (73)
T cd03078 15 VDPECLAVLAYLKFAGAPLKVVPSNNP-------WRSPT-GKLPALLTSGTKISGPEKIIEYLRKQ 72 (73)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEecCCC-------CCCCC-CccCEEEECCEEecChHHHHHHHHHc
Confidence 679999999999999999998755421 13577 89999999999999999999999864
No 104
>cd03211 GST_C_Metaxin2 GST_C family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=99.03 E-value=6.2e-10 Score=77.93 Aligned_cols=72 Identities=21% Similarity=0.173 Sum_probs=55.7
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCcccCCCCChhHHHHHHHHHHHHhhhh-hhccccCCcCccchHHHHHHHHH
Q 038634 119 ERELVTEEFFQQMKFLENELNGKDFFGGETIGFVDIVAIVVAIWFPLTQE-VLGVETFTEEKFPVLFKWIRKIT 191 (222)
Q Consensus 119 ~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~-~~~~~~~~~~~~p~l~~~~~~~~ 191 (222)
..++....+.+.|+.|++.|++++||+|++||.+|+++++.+..+..... ..+.... .++||||.+|++||.
T Consensus 54 ~~ee~~~~~~~~l~aLs~~Lg~~~~l~Gd~pT~~Da~vf~~la~~~~~~~~~~~l~~~-~~~~pnL~~y~~Ri~ 126 (126)
T cd03211 54 TLDQVIEEVDQCCQALSQRLGTQPYFFGDQPTELDALVFGHLFTILTTQLPNDELAEK-VKKYSNLLAFCRRIE 126 (126)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCcHHHHHHHHHHHHHHhcCCCChHHHHH-HHhCcHHHHHHHhcC
Confidence 44667788899999999999999999999999999999999877753200 0011111 378999999999973
No 105
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=98.96 E-value=4.2e-09 Score=66.47 Aligned_cols=68 Identities=21% Similarity=0.309 Sum_probs=58.3
Q ss_pred ceEEEeecCChHHHHHHHHHHHcCCCceEEeCCCCC-CchhhhhhCCCCCcccEEEeCCeeeeehHHHHH
Q 038634 4 EVKLYGTWSSPFSRRIELALKLKGVPFEYIEEDLSN-KSPELLKYNPVHKKIPVLVHNSKPIAESQVILE 72 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~g~vP~L~~~g~~i~es~~I~~ 72 (222)
+++||+.+.||+|++++.+|...||+|+.+.++-.. ..+++.++++. +++|++..||..|.+-....+
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~~~~~di~~~~~~~~el~~~~g~-~~vP~v~i~~~~iGg~~~~~~ 70 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLPYVEINIDIFPERKAELEERTGS-SVVPQIFFNEKLVGGLTDLKS 70 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHHhCC-CCcCEEEECCEEEeCHHHHHh
Confidence 689999999999999999999999999999886432 35678888887 799999999999887766554
No 106
>cd03205 GST_C_6 GST_C family, unknown subfamily 6; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain.
Probab=98.93 E-value=8.3e-09 Score=68.99 Aligned_cols=65 Identities=15% Similarity=0.251 Sum_probs=51.7
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCcccCCCCChhHHHHHHHHHHHHhhhhhhccccCCcCccchHHHHHHHH
Q 038634 119 ERELVTEEFFQQMKFLENELNGKDFFGGETIGFVDIVAIVVAIWFPLTQEVLGVETFTEEKFPVLFKWIRKI 190 (222)
Q Consensus 119 ~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~ 190 (222)
..+....++.+.|..+|++|++++| +++|+|||++++.+.+..... .+... .+++|+|.+|+++|
T Consensus 34 ~~~~~~~~~~~~l~~le~~L~~~~~---d~~TlADi~l~~~l~~~~~~~--~~~~~--~~~~p~l~~w~~rm 98 (98)
T cd03205 34 WLERQRGKIERALDALEAELAKLPL---DPLDLADIAVACALGYLDFRH--PDLDW--RAAHPALAAWYARF 98 (98)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhCCC---CCCCHHHHHHHHHHHHHHhHc--cCcch--hhhChHHHHHHHhC
Confidence 3456678899999999999998888 899999999999998885321 12222 37899999999985
No 107
>cd03212 GST_C_Metaxin1_3 GST_C family, Metaxin subfamily, Metaxin 1-like proteins; composed of metaxins 1 and 3, and similar proteins. Mammalian metaxin (or metaxin 1) is a component of the preprotein import complex of the mitochondrial outer membrane. Metaxin extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. Like the murine gene, the human metaxin gene is located downstream to the glucocerebrosidase (GBA) pseudogene and is convergently transcribed. Inherited deficiency of GBA results in Gaucher disease, which presents many diverse clinical phenotypes. Alterations in the metaxin gene, in addition to GBA mutations, may be associated with Gaucher disease. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken, and mammals.
Probab=98.92 E-value=5e-09 Score=74.36 Aligned_cols=73 Identities=14% Similarity=0.145 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCCCcccCCCCChhHHHHHHHHHHHHhhhh-hhccccCCcCccchHHHHHHHHHc
Q 038634 119 ERELVTEEFFQQMKFLENELNGKDFFGGETIGFVDIVAIVVAIWFPLTQE-VLGVETFTEEKFPVLFKWIRKITE 192 (222)
Q Consensus 119 ~~~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~-~~~~~~~~~~~~p~l~~~~~~~~~ 192 (222)
..++....+.+.++.||+.|++++|++|++||.+|+++++.+..+..... ...... ...++|||.+|++||.+
T Consensus 61 ~~~~~~~~a~~~l~~l~~~L~~~~~~~Gd~~t~~D~~~~~~l~~~~~~~~~~~~l~~-~~~~~pnL~~~~~ri~~ 134 (137)
T cd03212 61 VEAEIYRDAKECLNLLSQRLGESQFFFGDTPTSLDALVFGYLAPLLKAPLPNNKLQN-HLKQCPNLCRFCDRILS 134 (137)
T ss_pred hHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcHHHHHHHHHHHHHHhccCCChHHHH-HHHHCcHHHHHHHHHHH
Confidence 45566778889999999999999999999999999999998876642111 000001 03779999999999986
No 108
>cd03197 GST_C_mPGES2 GST_C family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH, or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature, and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated and a C-terminal soluble domain with a GST-like structure. The C-terminus contains two structural domains a N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. The GST active site is located in a cleft between t
Probab=98.92 E-value=1e-08 Score=72.80 Aligned_cols=64 Identities=13% Similarity=0.187 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHH-HHhcCCCCcccCCCCChhHHHHHHHHHHHHhhhhhhcc-ccCCcCccchHHHHHHHHHc
Q 038634 123 VTEEFFQQMKFL-ENELNGKDFFGGETIGFVDIVAIVVAIWFPLTQEVLGV-ETFTEEKFPVLFKWIRKITE 192 (222)
Q Consensus 123 ~~~~~~~~l~~l-e~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~-~~~~~~~~p~l~~~~~~~~~ 192 (222)
..+.+.+.++.+ +...++++|++|++||+||+++++.+..+... .++ ++ .++|+|.+|++||.+
T Consensus 80 ~r~~L~~a~~~w~~~~~~~~~FlaGd~ptIADisvyg~l~s~e~~---~~~~Dl---~~~p~I~~W~eRm~~ 145 (149)
T cd03197 80 VREWLYDALNTWVAALGKDRQFHGGSKPNLADLAVYGVLRSVEGH---PAFKDM---VEETKIGEWYERMDA 145 (149)
T ss_pred HHHHHHHHHHHHHHHhcCCCCccCCCCCCHHHHHHHHHHHHHHHh---ccccch---hhCcCHHHHHHHHHH
Confidence 344444444433 33334578999999999999999999877533 233 33 789999999999987
No 109
>PRK10329 glutaredoxin-like protein; Provisional
Probab=98.90 E-value=5.9e-09 Score=67.01 Aligned_cols=62 Identities=18% Similarity=0.321 Sum_probs=49.2
Q ss_pred ceEEEeecCChHHHHHHHHHHHcCCCceEEeCCCCCCchhhhhhCCCCCcccEEEeCCeeeee
Q 038634 4 EVKLYGTWSSPFSRRIELALKLKGVPFEYIEEDLSNKSPELLKYNPVHKKIPVLVHNSKPIAE 66 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~i~e 66 (222)
+++||+.++||+|.+++-+|..+||+|+.+.++-.....+....++. .+||+++.+|..+.+
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~gI~~~~idi~~~~~~~~~~~~~g~-~~vPvv~i~~~~~~G 63 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRGFDFEMINVDRVPEAAETLRAQGF-RQLPVVIAGDLSWSG 63 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCC-CCcCEEEECCEEEec
Confidence 58999999999999999999999999999988743322233344676 799999988865543
No 110
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=98.87 E-value=1.4e-08 Score=63.48 Aligned_cols=69 Identities=19% Similarity=0.263 Sum_probs=59.2
Q ss_pred ceEEEeecCChHHHHHHHHHHHcCCCceEEeCCCCC-CchhhhhhCCCCCcccEEEeCCeeeeehHHHHHH
Q 038634 4 EVKLYGTWSSPFSRRIELALKLKGVPFEYIEEDLSN-KSPELLKYNPVHKKIPVLVHNSKPIAESQVILEY 73 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~g~vP~L~~~g~~i~es~~I~~y 73 (222)
++++|+.++||+|++++.+|..+|++|+.+.++... ...++...++. .++|++..+|..+.++..|.+.
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~i~~~~~di~~~~~~~~~l~~~~~~-~~~P~~~~~~~~igg~~~~~~~ 70 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLGIEFEEIDILEDGELREELKELSGW-PTVPQIFINGEFIGGYDDLKAL 70 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHhCC-CCcCEEEECCEEEecHHHHHHh
Confidence 478999999999999999999999999988776433 34567778887 7999999999999999888764
No 111
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.82 E-value=2.2e-08 Score=62.89 Aligned_cols=70 Identities=27% Similarity=0.373 Sum_probs=55.8
Q ss_pred ceEEEeecCChHHHHHHHHHHHcCCCceEEeCCCCC-CchhhhhhCCCCCcccEEEeCCeee--eehHHHHHHH
Q 038634 4 EVKLYGTWSSPFSRRIELALKLKGVPFEYIEEDLSN-KSPELLKYNPVHKKIPVLVHNSKPI--AESQVILEYI 74 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~g~vP~L~~~g~~i--~es~~I~~yL 74 (222)
+++||+.++||+|++++.+|...|++|..+.++-.. ...++...++. +.+|+++.+|..+ .++..|.++|
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~i~~~~vdi~~~~~~~~~~~~~~~~-~~vP~~~~~~~~~~g~~~~~i~~~i 73 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKGIAFEEIDVEKDSAAREEVLKVLGQ-RGVPVIVIGHKIIVGFDPEKLDQLL 73 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCCCeEEEEeccCCHHHHHHHHHHhCC-CcccEEEECCEEEeeCCHHHHHHHh
Confidence 479999999999999999999999999988776432 23456677887 7899999988877 5666666654
No 112
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=98.79 E-value=3.6e-08 Score=62.39 Aligned_cols=70 Identities=20% Similarity=0.312 Sum_probs=56.6
Q ss_pred ceEEEeecCChHHHHHHHHHHHcCCCceEEeCCCC-CCchhhhhhCCCCC-cccEEEeCCeeeeehHHHHHHH
Q 038634 4 EVKLYGTWSSPFSRRIELALKLKGVPFEYIEEDLS-NKSPELLKYNPVHK-KIPVLVHNSKPIAESQVILEYI 74 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~g-~vP~L~~~g~~i~es~~I~~yL 74 (222)
+++||+.+.||+|.+++-+|+..|++|+.+.++.. +...++...... . ++|++..+|..+.+...+.++-
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~i~~~~i~i~~~~~~~~~~~~~~~~-~~~vP~v~i~g~~igg~~~~~~~~ 72 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKGVDYEEIDVDGDPALREEMINRSGG-RRTVPQIFIGDVHIGGCDDLYALE 72 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCC-CCccCEEEECCEEEeChHHHHHHH
Confidence 47999999999999999999999999999988743 122334444443 3 8999999999999999888764
No 113
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.79 E-value=2.3e-08 Score=62.67 Aligned_cols=63 Identities=27% Similarity=0.452 Sum_probs=53.2
Q ss_pred ceEEEeecCChHHHHHHHHHHHcCCCceEEeCCCCC-CchhhhhhCCCCCcccEEEeCCeeeeeh
Q 038634 4 EVKLYGTWSSPFSRRIELALKLKGVPFEYIEEDLSN-KSPELLKYNPVHKKIPVLVHNSKPIAES 67 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~g~vP~L~~~g~~i~es 67 (222)
++++|+.++||+|.+++.+|.++|++|..+.++... ..+++.+.+|. +.+|+++++|..+.+.
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i~~~~~~i~~~~~~~~~~~~~~~~-~~vP~i~~~~~~i~g~ 64 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGIPFEEVDVDEDPEALEELKKLNGY-RSVPVVVIGDEHLSGF 64 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCCCeEEEeCCCCHHHHHHHHHHcCC-cccCEEEECCEEEecC
Confidence 479999999999999999999999999998887532 34567788898 7999999988776554
No 114
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=1.1e-07 Score=60.90 Aligned_cols=69 Identities=20% Similarity=0.367 Sum_probs=54.5
Q ss_pred ceEEEeecCChHHHHHHHHHHHcCCCceEEeCCCCC--Cchhhh-hhCCCCCcccEEEeCCeeeeehHHHHHH
Q 038634 4 EVKLYGTWSSPFSRRIELALKLKGVPFEYIEEDLSN--KSPELL-KYNPVHKKIPVLVHNSKPIAESQVILEY 73 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~--~~~~~~-~~~p~~g~vP~L~~~g~~i~es~~I~~y 73 (222)
.+++|+.+.||||.++.-+|..+|++|+.+.++..+ ...++. ..++. .+||++..||..+.......++
T Consensus 2 ~v~iyt~~~CPyC~~ak~~L~~~g~~~~~i~~~~~~~~~~~~~~~~~~g~-~tvP~I~i~~~~igg~~d~~~~ 73 (80)
T COG0695 2 NVTIYTKPGCPYCKRAKRLLDRKGVDYEEIDVDDDEPEEAREMVKRGKGQ-RTVPQIFIGGKHVGGCDDLDAL 73 (80)
T ss_pred CEEEEECCCCchHHHHHHHHHHcCCCcEEEEecCCcHHHHHHHHHHhCCC-CCcCEEEECCEEEeCcccHHHH
Confidence 489999999999999999999999999999887654 333444 44477 7999999999877755444443
No 115
>PF14834 GST_C_4: Glutathione S-transferase, C-terminal domain; PDB: 3BBY_A.
Probab=98.70 E-value=2.7e-07 Score=61.78 Aligned_cols=104 Identities=15% Similarity=0.026 Sum_probs=70.1
Q ss_pred CHHHHHHHHHHHHHhhhhhhhHh-----HHhhcc--chhhHHHHHHHHHHHHHHHHHhcCC-CCcccCCCCChhHHHHHH
Q 038634 87 DPYQRAMARFWGKFIDEKALATR-----MKANFA--EGKERELVTEEFFQQMKFLENELNG-KDFFGGETIGFVDIVAIV 158 (222)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~--~~~~~~~~~~~~~~~l~~le~~L~~-~~~l~G~~~t~aD~~l~~ 158 (222)
|..++++.+++..+..+.+.+.= ...|.. ...-.+++...+.+.+...+..|.. ++||+|+ .|+||..+++
T Consensus 1 D~~~RArAR~vqAwlrSdf~~lR~Erpt~vvf~~~~~~pLs~~a~~~a~kL~~~a~~ll~~g~~~LFGe-wsIAD~dlA~ 79 (117)
T PF14834_consen 1 DRQERARARQVQAWLRSDFMALRQERPTNVVFRGARKPPLSEAAQAAAQKLIAVAERLLADGGPNLFGE-WSIADADLAL 79 (117)
T ss_dssp SHHHHHHHHHHHHHHHHS-HHHHHHS-THHHHS--------HHHHHHHHHHHHHHHHHTTT--SSTTSS---HHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcccHHHHhhCChhhhhcCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCcccc-chHHHHHHHH
Confidence 45678999998888887766532 112222 2234456677778888889998875 7899996 9999999999
Q ss_pred HHHHHHhhhhhhccccCCcCccchHHHHHHHHHccccccccC
Q 038634 159 VAIWFPLTQEVLGVETFTEEKFPVLFKWIRKITEIDVVNECR 200 (222)
Q Consensus 159 ~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~~~~ 200 (222)
++.++... |.++ -+.+..|.++.-++|++++.+
T Consensus 80 ml~Rl~~~----gd~v-----P~~l~~Ya~~qwqrpsVQ~Wl 112 (117)
T PF14834_consen 80 MLNRLVTY----GDPV-----PERLADYAERQWQRPSVQRWL 112 (117)
T ss_dssp HHHHHHTT----T---------HHHHHHHHHHHT-HHHHHHH
T ss_pred HHHHHHHc----CCCC-----CHHHHHHHHHHHCCHHHHHHH
Confidence 99999533 4333 578999999999999998754
No 116
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=98.65 E-value=1.5e-07 Score=60.23 Aligned_cols=71 Identities=20% Similarity=0.287 Sum_probs=58.5
Q ss_pred eEEEeecCChHHHHHHHHHHHcCCCceEEeCCCCC-CchhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHh
Q 038634 5 VKLYGTWSSPFSRRIELALKLKGVPFEYIEEDLSN-KSPELLKYNPVHKKIPVLVHNSKPIAESQVILEYIDE 76 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~g~vP~L~~~g~~i~es~~I~~yL~~ 76 (222)
+++|+.+.||+|.+++-+|+..|++|+.+.++... ...++...... ..+|++..+|..+.+...+..+-++
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~i~~~~~di~~~~~~~~~~~~~~g~-~~vP~i~i~g~~igg~~~~~~~~~~ 72 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKGVTFTEIRVDGDPALRDEMMQRSGR-RTVPQIFIGDVHVGGCDDLYALDRE 72 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcCCCcEEEEecCCHHHHHHHHHHhCC-CCcCEEEECCEEEcChHHHHHHHHc
Confidence 57999999999999999999999999999887432 23455566665 6899999999999998888776544
No 117
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=98.64 E-value=1.1e-07 Score=59.78 Aligned_cols=57 Identities=21% Similarity=0.374 Sum_probs=45.1
Q ss_pred eEEEeecCChHHHHHHHHHHHcCCCceEEeCCCCCCchhhhhhCCCCCcccEEEeCCe
Q 038634 5 VKLYGTWSSPFSRRIELALKLKGVPFEYIEEDLSNKSPELLKYNPVHKKIPVLVHNSK 62 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~ 62 (222)
+++|+.+.||+|++++-+|..+|++|+.+.++-.....+.....+. ..||+++.+|.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~~i~~~~~di~~~~~~~~~~~~~g~-~~vP~v~~~g~ 57 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEHGIAFEEINIDEQPEAIDYVKAQGF-RQVPVIVADGD 57 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHCCCceEEEECCCCHHHHHHHHHcCC-cccCEEEECCC
Confidence 5899999999999999999999999999988754323333334465 58999998664
No 118
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.63 E-value=2.6e-07 Score=60.05 Aligned_cols=76 Identities=16% Similarity=0.259 Sum_probs=60.8
Q ss_pred ceEEEeecCChHHHHHHHHHHH-----cCCCceEEeCCCCC-CchhhhhhCCC-CCcccEEEeCCeeeeehHHHHHHHHh
Q 038634 4 EVKLYGTWSSPFSRRIELALKL-----KGVPFEYIEEDLSN-KSPELLKYNPV-HKKIPVLVHNSKPIAESQVILEYIDE 76 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~l~~-----~gi~~~~~~v~~~~-~~~~~~~~~p~-~g~vP~L~~~g~~i~es~~I~~yL~~ 76 (222)
++++|+.++||+|.+++-+|.. .|++|+.+.++... ...++...... ..++|++..||+.+.+...|.+++.+
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi~g~~igg~~~~~~~~~~ 81 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFVDQKHIGGCTDFEAYVKE 81 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEECCEEEcCHHHHHHHHHH
Confidence 3999999999999999999999 89999998887432 12344433321 03799999999999999999999988
Q ss_pred hcC
Q 038634 77 IWN 79 (222)
Q Consensus 77 ~~~ 79 (222)
.++
T Consensus 82 ~~~ 84 (85)
T PRK11200 82 NLG 84 (85)
T ss_pred hcc
Confidence 765
No 119
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=98.61 E-value=4.9e-07 Score=60.44 Aligned_cols=70 Identities=14% Similarity=0.141 Sum_probs=57.7
Q ss_pred cceEEEeecCChHHHHHHHHHHHcCCCceEEeCCCCCCch----hhhhhCCCCCcccEEEeCCeeeeehHHHHHH
Q 038634 3 EEVKLYGTWSSPFSRRIELALKLKGVPFEYIEEDLSNKSP----ELLKYNPVHKKIPVLVHNSKPIAESQVILEY 73 (222)
Q Consensus 3 ~~~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~----~~~~~~p~~g~vP~L~~~g~~i~es~~I~~y 73 (222)
+++++|+.++||||.+++-+|...|++|+.+.++..+... .+...+.. .++|++..+|..|.+...+...
T Consensus 8 ~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid~~~~~~~~~~~l~~~tg~-~tvP~Vfi~g~~iGG~ddl~~l 81 (99)
T TIGR02189 8 KAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEIDKEPAGKDIENALSRLGCS-PAVPAVFVGGKLVGGLENVMAL 81 (99)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcCCCccHHHHHHHHHHhcCC-CCcCeEEECCEEEcCHHHHHHH
Confidence 4799999999999999999999999999999997543222 34455565 6899999999999998877764
No 120
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=98.57 E-value=9.2e-08 Score=57.81 Aligned_cols=59 Identities=25% Similarity=0.457 Sum_probs=49.3
Q ss_pred eEEEeecCChHHHHHHHHHHHcCCCceEEeCCCC-CCchhhhhhCCCCCcccEEEeCCeee
Q 038634 5 VKLYGTWSSPFSRRIELALKLKGVPFEYIEEDLS-NKSPELLKYNPVHKKIPVLVHNSKPI 64 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~g~vP~L~~~g~~i 64 (222)
+++|+.+.||+|.+++-+|...|++|+.+.++.. ....++.+.... .++|++..||+.|
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i~y~~~dv~~~~~~~~~l~~~~g~-~~~P~v~i~g~~I 60 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGIPYEEVDVDEDEEAREELKELSGV-RTVPQVFIDGKFI 60 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTBEEEEEEGGGSHHHHHHHHHHHSS-SSSSEEEETTEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCCeeeEcccccchhHHHHHHHHcCC-CccCEEEECCEEC
Confidence 5899999999999999999999999999999765 344556666555 6899999998765
No 121
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.57 E-value=2e-07 Score=59.10 Aligned_cols=64 Identities=13% Similarity=0.308 Sum_probs=50.6
Q ss_pred ceEEEeecCChHHHHHHHHHHHcCCCceEEeCCCCC-CchhhhhhC-CCCCcccEEE-eCCeeeeehH
Q 038634 4 EVKLYGTWSSPFSRRIELALKLKGVPFEYIEEDLSN-KSPELLKYN-PVHKKIPVLV-HNSKPIAESQ 68 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~-p~~g~vP~L~-~~g~~i~es~ 68 (222)
+++||+.++||+|++++..|...|++|+.+.++-.. ....+..+| +. ..+|+++ ++|.++.++.
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~~~~~~idi~~~~~~~~~~~~~~~~~-~~vP~i~~~~g~~l~~~~ 67 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLGAAYEWVDIEEDEGAADRVVSVNNGN-MTVPTVKFADGSFLTNPS 67 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcCCceEEEeCcCCHhHHHHHHHHhCCC-ceeCEEEECCCeEecCCC
Confidence 479999999999999999999999999987776433 234555666 76 6999997 5777776654
No 122
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=98.55 E-value=7.3e-07 Score=57.33 Aligned_cols=72 Identities=18% Similarity=0.237 Sum_probs=60.1
Q ss_pred ceEEEeecCChHHHHHHHHHHHcCCCceEEeCCCCCCc----hhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHh
Q 038634 4 EVKLYGTWSSPFSRRIELALKLKGVPFEYIEEDLSNKS----PELLKYNPVHKKIPVLVHNSKPIAESQVILEYIDE 76 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~----~~~~~~~p~~g~vP~L~~~g~~i~es~~I~~yL~~ 76 (222)
++++|+.++||+|.+++-+|...+++|+...++..+.. ..+.+.+.. .++|++..+|..+.++..|.++..+
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~g~-~~~P~v~~~g~~igg~~~~~~~~~~ 76 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGVKPAVVELDQHEDGSEIQDYLQELTGQ-RTVPNVFIGGKFIGGCDDLMALHKS 76 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCCCcEEEEEeCCCChHHHHHHHHHHhCC-CCCCeEEECCEEEcCHHHHHHHHHc
Confidence 47899999999999999999999999999988765432 234455665 5899999999999999999988654
No 123
>PHA03050 glutaredoxin; Provisional
Probab=98.52 E-value=9.4e-07 Score=59.93 Aligned_cols=69 Identities=14% Similarity=0.243 Sum_probs=57.5
Q ss_pred cceEEEeecCChHHHHHHHHHHHcCC---CceEEeCCCCCC----chhhhhhCCCCCcccEEEeCCeeeeehHHHHH
Q 038634 3 EEVKLYGTWSSPFSRRIELALKLKGV---PFEYIEEDLSNK----SPELLKYNPVHKKIPVLVHNSKPIAESQVILE 72 (222)
Q Consensus 3 ~~~~Ly~~~~sp~~~~v~~~l~~~gi---~~~~~~v~~~~~----~~~~~~~~p~~g~vP~L~~~g~~i~es~~I~~ 72 (222)
+++++|+.++||||.+++-+|...|+ +|+.+.++-... ..++.+.+.. .+||.+..||..|.+...+..
T Consensus 13 ~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~-~tVP~IfI~g~~iGG~ddl~~ 88 (108)
T PHA03050 13 NKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGG-RTVPRIFFGKTSIGGYSDLLE 88 (108)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCC-CCcCEEEECCEEEeChHHHHH
Confidence 47999999999999999999999999 788888874222 3456677776 689999999999988877766
No 124
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.50 E-value=8.7e-07 Score=57.65 Aligned_cols=75 Identities=16% Similarity=0.285 Sum_probs=57.4
Q ss_pred eEEEeecCChHHHHHHHHHHHcC-----CCceEEeCCCCC-CchhhhhhCCC-CCcccEEEeCCeeeeehHHHHHHHHhh
Q 038634 5 VKLYGTWSSPFSRRIELALKLKG-----VPFEYIEEDLSN-KSPELLKYNPV-HKKIPVLVHNSKPIAESQVILEYIDEI 77 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~g-----i~~~~~~v~~~~-~~~~~~~~~p~-~g~vP~L~~~g~~i~es~~I~~yL~~~ 77 (222)
+++|+.++||+|.+++-+|...+ ++|+.+.++... ...++...... ..+||++..||..+.++..|..++.++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi~g~~igG~~dl~~~~~~~ 81 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFVDEKHVGGCTDFEQLVKEN 81 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEECCEEecCHHHHHHHHHhc
Confidence 58999999999999999999984 567777665321 12344443331 037999999999999999999999887
Q ss_pred cC
Q 038634 78 WN 79 (222)
Q Consensus 78 ~~ 79 (222)
+.
T Consensus 82 ~~ 83 (86)
T TIGR02183 82 FD 83 (86)
T ss_pred cc
Confidence 64
No 125
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=98.35 E-value=3.3e-06 Score=56.22 Aligned_cols=71 Identities=27% Similarity=0.340 Sum_probs=55.9
Q ss_pred cceEEEee-----cCChHHHHHHHHHHHcCCCceEEeCCCCC-CchhhhhhCCCCCcccEEEeCCeeeeehHHHHHHH
Q 038634 3 EEVKLYGT-----WSSPFSRRIELALKLKGVPFEYIEEDLSN-KSPELLKYNPVHKKIPVLVHNSKPIAESQVILEYI 74 (222)
Q Consensus 3 ~~~~Ly~~-----~~sp~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~g~vP~L~~~g~~i~es~~I~~yL 74 (222)
+++.+|.. +.||||.+++-+|...|++|+.+.++-.. ...++...+.. .++|.+..||..|.+...+....
T Consensus 12 ~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~i~~~~~di~~~~~~~~~l~~~tg~-~tvP~vfi~g~~iGG~ddl~~l~ 88 (97)
T TIGR00365 12 NPVVLYMKGTPQFPQCGFSARAVQILKACGVPFAYVNVLEDPEIRQGIKEYSNW-PTIPQLYVKGEFVGGCDIIMEMY 88 (97)
T ss_pred CCEEEEEccCCCCCCCchHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHhCC-CCCCEEEECCEEEeChHHHHHHH
Confidence 46888975 89999999999999999999988875321 22344455666 68999999999998888777643
No 126
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.29 E-value=7.1e-06 Score=52.84 Aligned_cols=71 Identities=18% Similarity=0.267 Sum_probs=57.6
Q ss_pred eEEEeecCChHHHHHHHHHHHcCCC--ceEEeCCCCCCch----hhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHh
Q 038634 5 VKLYGTWSSPFSRRIELALKLKGVP--FEYIEEDLSNKSP----ELLKYNPVHKKIPVLVHNSKPIAESQVILEYIDE 76 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~--~~~~~v~~~~~~~----~~~~~~p~~g~vP~L~~~g~~i~es~~I~~yL~~ 76 (222)
+++|+.++||+|.+++-+|...+++ |+...++..+... .+...... .++|++..+|..+.++..+.++..+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~~~~~~~~v~~~~~~~~~~~~l~~~~g~-~~vP~v~i~g~~igg~~~~~~~~~~ 77 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVKPAYEVVELDQLSNGSEIQDYLEEITGQ-RTVPNIFINGKFIGGCSDLLALYKS 77 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCCCCCEEEEeeCCCChHHHHHHHHHHhCC-CCCCeEEECCEEEcCHHHHHHHHHc
Confidence 4789999999999999999999999 8888887653332 24455555 5899999999999999988887654
No 127
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=98.26 E-value=6.6e-06 Score=53.97 Aligned_cols=71 Identities=21% Similarity=0.245 Sum_probs=56.8
Q ss_pred cceEEEee-----cCChHHHHHHHHHHHcCCCceEEeCCCCC-CchhhhhhCCCCCcccEEEeCCeeeeehHHHHHHH
Q 038634 3 EEVKLYGT-----WSSPFSRRIELALKLKGVPFEYIEEDLSN-KSPELLKYNPVHKKIPVLVHNSKPIAESQVILEYI 74 (222)
Q Consensus 3 ~~~~Ly~~-----~~sp~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~g~vP~L~~~g~~i~es~~I~~yL 74 (222)
.++++|+. ++||||.+++-+|...|++|+.+.++-.. ...++.+.+.. .++|++..+|..|.+...+....
T Consensus 8 ~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~i~y~~idv~~~~~~~~~l~~~~g~-~tvP~vfi~g~~iGG~~~l~~l~ 84 (90)
T cd03028 8 NPVVLFMKGTPEEPRCGFSRKVVQILNQLGVDFGTFDILEDEEVRQGLKEYSNW-PTFPQLYVNGELVGGCDIVKEMH 84 (90)
T ss_pred CCEEEEEcCCCCCCCCcHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHHHHHhCC-CCCCEEEECCEEEeCHHHHHHHH
Confidence 36788876 69999999999999999999999886432 23445556666 68999999999999988887754
No 128
>PF10568 Tom37: Outer mitochondrial membrane transport complex protein; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=98.06 E-value=2.8e-05 Score=48.53 Aligned_cols=55 Identities=22% Similarity=0.414 Sum_probs=48.0
Q ss_pred CChHHHHHHHHHHHcCCC---ceEEeCCCCCCchhhhhhCCCCCcccEEEe-CCeeeeehHHHHHHH
Q 038634 12 SSPFSRRIELALKLKGVP---FEYIEEDLSNKSPELLKYNPVHKKIPVLVH-NSKPIAESQVILEYI 74 (222)
Q Consensus 12 ~sp~~~~v~~~l~~~gi~---~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~-~g~~i~es~~I~~yL 74 (222)
.+|-|.++...|+..+.+ |+++..+-.. .+|. |++|+|.+ +++.+.+-..|++||
T Consensus 13 id~ecLa~~~yl~~~~~~~~~~~vv~s~n~~-------~Spt-g~LP~L~~~~~~~vsg~~~Iv~yL 71 (72)
T PF10568_consen 13 IDPECLAVIAYLKFAGAPEQQFKVVPSNNPW-------LSPT-GELPALIDSGGTWVSGFRNIVEYL 71 (72)
T ss_pred cCHHHHHHHHHHHhCCCCCceEEEEEcCCCC-------cCCC-CCCCEEEECCCcEEECHHHHHHhh
Confidence 678999999999999999 8888775322 4677 89999999 899999999999998
No 129
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=97.99 E-value=3.3e-05 Score=64.83 Aligned_cols=70 Identities=20% Similarity=0.346 Sum_probs=55.2
Q ss_pred CCcceEEEeecCChHHHHHHHHHHHcCCCceEEeCCCCCCchhhh-h--------hCCCCCcccEEEeCCeeeeehHHHH
Q 038634 1 MAEEVKLYGTWSSPFSRRIELALKLKGVPFEYIEEDLSNKSPELL-K--------YNPVHKKIPVLVHNSKPIAESQVIL 71 (222)
Q Consensus 1 M~~~~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~-~--------~~p~~g~vP~L~~~g~~i~es~~I~ 71 (222)
|. ++++|+.++||+|.++.-+|...||+|+.+.++-.....++. . .... .+||++..||..|.+-..+.
T Consensus 1 m~-~V~vys~~~Cp~C~~aK~~L~~~gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~-~tvP~ifi~~~~igGf~~l~ 78 (410)
T PRK12759 1 MV-EVRIYTKTNCPFCDLAKSWFGANDIPFTQISLDDDVKRAEFYAEVNKNILLVEEHI-RTVPQIFVGDVHIGGYDNLM 78 (410)
T ss_pred CC-cEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCChhHHHHHHHHhhccccccCCC-CccCeEEECCEEEeCchHHH
Confidence 66 799999999999999999999999999999987332222322 1 1344 58999999999888887776
Q ss_pred H
Q 038634 72 E 72 (222)
Q Consensus 72 ~ 72 (222)
.
T Consensus 79 ~ 79 (410)
T PRK12759 79 A 79 (410)
T ss_pred H
Confidence 5
No 130
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=0.00018 Score=48.23 Aligned_cols=71 Identities=20% Similarity=0.272 Sum_probs=59.2
Q ss_pred cceEEEeecCChHHHHHHHHHHHcCCCceEEeCCCCCCchhh----hhhCCCCCcccEEEeCCeeeeehHHHHHHH
Q 038634 3 EEVKLYGTWSSPFSRRIELALKLKGVPFEYIEEDLSNKSPEL----LKYNPVHKKIPVLVHNSKPIAESQVILEYI 74 (222)
Q Consensus 3 ~~~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~----~~~~p~~g~vP~L~~~g~~i~es~~I~~yL 74 (222)
.++.+|+-.+||||+++.-+|...|+++.++++|..+...++ .++... .+||.+..+|+.|.....++.+=
T Consensus 14 ~~VVifSKs~C~~c~~~k~ll~~~~v~~~vvELD~~~~g~eiq~~l~~~tg~-~tvP~vFI~Gk~iGG~~dl~~lh 88 (104)
T KOG1752|consen 14 NPVVIFSKSSCPYCHRAKELLSDLGVNPKVVELDEDEDGSEIQKALKKLTGQ-RTVPNVFIGGKFIGGASDLMALH 88 (104)
T ss_pred CCEEEEECCcCchHHHHHHHHHhCCCCCEEEEccCCCCcHHHHHHHHHhcCC-CCCCEEEECCEEEcCHHHHHHHH
Confidence 578999999999999999999999999999999876543333 344555 58999999999999998888753
No 131
>PF04399 Glutaredoxin2_C: Glutaredoxin 2, C terminal domain; InterPro: IPR007494 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. Unlike other glutaredoxins, glutaredoxin 2 (Grx2) cannot reduce ribonucleotide reductase. Grx2 has significantly higher catalytic activity in the reduction of mixed disulphides with glutathione (GSH) compared with other glutaredoxins. The active site residues (Cys9-Pro10-Tyr11-Cys12, in Escherichia coli Grx2, P39811 from SWISSPROT), which are found at the interface between the N- and C-terminal domains are identical to other glutaredoxins, but there is no other similarity between glutaredoxin 2 and other glutaredoxins. Grx2 is structurally similar to glutathione-S-transferases (GST), but there is no obvious sequence similarity. The inter-domain contacts are mainly hydrophobic, suggesting that the two domains are unlikely to be stable on their own. Both domains are needed for correct folding and activity of Grx2. It is thought that the primary function of Grx2 is to catalyse reversible glutathionylation of proteins with GSH in cellular redox regulation including the response to oxidative stress. The N-terminal domain is IPR004045 from INTERPRO.; PDB: 1G7O_A 3IR4_A.
Probab=97.87 E-value=0.00017 Score=50.39 Aligned_cols=67 Identities=16% Similarity=0.226 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCcccCCCCChhHHHHHHHHHHHHhhhhhhccccCCcCccchHHHHHHHHHccccc
Q 038634 121 ELVTEEFFQQMKFLENELNGKDFFGGETIGFVDIVAIVVAIWFPLTQEVLGVETFTEEKFPVLFKWIRKITEIDVV 196 (222)
Q Consensus 121 ~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 196 (222)
.+...++...|..||..+.......| ++|+-||.+|+.|+.+ .-+.|..+ -|++.+|+++|.+...+
T Consensus 58 ~~~i~~l~~~L~~Le~ll~~~~~~n~-~LS~dDi~lFp~LR~L---tivkgi~~-----P~~V~~Y~~~~s~~t~V 124 (132)
T PF04399_consen 58 PELIAELNADLEELEPLLASPNAVNG-ELSIDDIILFPILRSL---TIVKGIQW-----PPKVRAYMDRMSKATGV 124 (132)
T ss_dssp HHHHHHHHHHHHHHHHH-SCTTBTTS-S--HHHHHHHHHHHHH---CTCTTS--------HHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHhccccccCC-CCCHHHHHHHHHHhhh---hhccCCcC-----CHHHHHHHHHHHHHcCC
Confidence 45677888899999999886555555 8999999999999888 44456555 58999999999987655
No 132
>PRK10824 glutaredoxin-4; Provisional
Probab=97.84 E-value=0.00011 Score=50.23 Aligned_cols=71 Identities=24% Similarity=0.314 Sum_probs=56.6
Q ss_pred cceEEEee-----cCChHHHHHHHHHHHcCCCceEEeCCCC-CCchhhhhhCCCCCcccEEEeCCeeeeehHHHHHHH
Q 038634 3 EEVKLYGT-----WSSPFSRRIELALKLKGVPFEYIEEDLS-NKSPELLKYNPVHKKIPVLVHNSKPIAESQVILEYI 74 (222)
Q Consensus 3 ~~~~Ly~~-----~~sp~~~~v~~~l~~~gi~~~~~~v~~~-~~~~~~~~~~p~~g~vP~L~~~g~~i~es~~I~~yL 74 (222)
+++.+|.. ++||||.++.-+|...|++|..+.++-. .-...+...+.. .+||-+..||+.|.+...+....
T Consensus 15 ~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i~~~~idi~~d~~~~~~l~~~sg~-~TVPQIFI~G~~IGG~ddl~~l~ 91 (115)
T PRK10824 15 NPILLYMKGSPKLPSCGFSAQAVQALSACGERFAYVDILQNPDIRAELPKYANW-PTFPQLWVDGELVGGCDIVIEMY 91 (115)
T ss_pred CCEEEEECCCCCCCCCchHHHHHHHHHHcCCCceEEEecCCHHHHHHHHHHhCC-CCCCeEEECCEEEcChHHHHHHH
Confidence 46788876 5999999999999999999998877643 123345566666 69999999999999988777653
No 133
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=97.75 E-value=0.00019 Score=51.32 Aligned_cols=70 Identities=16% Similarity=0.177 Sum_probs=55.4
Q ss_pred ceEEEeec------CChHHHHHHHHHHHcCCCceEEeCCCCC-CchhhhhhCCC---CCcccEEEeCCeeeeehHHHHHH
Q 038634 4 EVKLYGTW------SSPFSRRIELALKLKGVPFEYIEEDLSN-KSPELLKYNPV---HKKIPVLVHNSKPIAESQVILEY 73 (222)
Q Consensus 4 ~~~Ly~~~------~sp~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~---~g~vP~L~~~g~~i~es~~I~~y 73 (222)
+++||+.+ .+|+|.+++.+|+..||+|+.+.|+... ...++.+.... ..++|.+..+|..|.+...+.+.
T Consensus 1 ~VvlYttsl~giR~t~~~C~~ak~iL~~~~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI~G~~IGG~del~~L 80 (147)
T cd03031 1 RVVLYTTSLRGVRKTFEDCNNVRAILESFRVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFVDGRYLGGAEEVLRL 80 (147)
T ss_pred CEEEEEcCCcCCCCcChhHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEECCEEEecHHHHHHH
Confidence 47899999 8999999999999999999998887542 34455444221 14799999999999998887764
No 134
>KOG1147 consensus Glutamyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=97.67 E-value=2.9e-05 Score=65.24 Aligned_cols=112 Identities=13% Similarity=0.199 Sum_probs=78.2
Q ss_pred CCeeeeehHHHHHHHHhhc-CCCCCCCCCHHHHHHHHHHHHHhhhhhhhHhHHhhccchhhHHHHHHHHHHHHHHHHHhc
Q 038634 60 NSKPIAESQVILEYIDEIW-NNNPILPQDPYQRAMARFWGKFIDEKALATRMKANFAEGKERELVTEEFFQQMKFLENEL 138 (222)
Q Consensus 60 ~g~~i~es~~I~~yL~~~~-~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L 138 (222)
+|..+.++..+..|.++.. +.+.+++.+ .++..++.|+++.... ....+...+..|+.+|
T Consensus 44 d~~~l~~a~~~~~~~~~~~~~~~~lf~~~-~d~~~vd~w~~~s~~~------------------~~~~~s~~~~~ld~~l 104 (712)
T KOG1147|consen 44 DGRKLNGATEPVVYSAALAKADPKLFGNN-IDRSQVDHWVSFSSTF------------------SFDEISSSLSELDKFL 104 (712)
T ss_pred ccccccCCccchhhhhhhcccCHhHcCCc-ccHHHHHHHHHHhhhc------------------chHHHHHHHHHHHhhh
Confidence 3556666666667766443 334588777 7899999999987651 2245677788888899
Q ss_pred CCCCcccCCCCChhHHHHHHHHHHHHhhhhhhccccCCcCccchHHHHHHHHHccc
Q 038634 139 NGKDFFGGETIGFVDIVAIVVAIWFPLTQEVLGVETFTEEKFPVLFKWIRKITEID 194 (222)
Q Consensus 139 ~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p 194 (222)
.-..||+|.++|+||+++|+.++.-...++.... ...+-++.+|++-....+
T Consensus 105 ~~~t~lvg~sls~Ad~aiw~~l~~n~~~~~~lk~----~k~~~~v~Rw~~~~~~~~ 156 (712)
T KOG1147|consen 105 VLRTFLVGNSLSIADFAIWGALHSNGMRQEQLKA----KKDYQNVERWYDLPEFQE 156 (712)
T ss_pred hHHHHhhccchhHHHHHHHHHHhcccchHHHHHh----hCCchhhhhhcCcHhHHH
Confidence 8889999999999999999988765322222111 245778999998333333
No 135
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.00032 Score=43.07 Aligned_cols=63 Identities=25% Similarity=0.356 Sum_probs=48.6
Q ss_pred CCcceEEEeecCChHHHHHHHHHHHcCCCceEEeCCCC-----------CCchhhhhh--CCCCCcccEEE-eCCeeee
Q 038634 1 MAEEVKLYGTWSSPFSRRIELALKLKGVPFEYIEEDLS-----------NKSPELLKY--NPVHKKIPVLV-HNSKPIA 65 (222)
Q Consensus 1 M~~~~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~-----------~~~~~~~~~--~p~~g~vP~L~-~~g~~i~ 65 (222)
|+ +.+||+...||-|-...-.|+-.+++|+.+.+.-+ +..++|.+. |.. --+|+|. ++|+++.
T Consensus 1 ms-kp~lfgsn~Cpdca~a~eyl~rl~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gy-iGIPall~~d~~vVl 77 (85)
T COG4545 1 MS-KPKLFGSNLCPDCAPAVEYLERLNVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGY-IGIPALLTDDGKVVL 77 (85)
T ss_pred CC-CceeeccccCcchHHHHHHHHHcCCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCc-ccceEEEeCCCcEEE
Confidence 77 77999999999999999999999999999988643 345555543 332 2489987 5666665
No 136
>cd03199 GST_C_GRX2 GST_C family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD (most GRXs range from 9-12kD). GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain, but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=97.44 E-value=0.00086 Score=46.54 Aligned_cols=67 Identities=10% Similarity=0.122 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCcccCCCCChhHHHHHHHHHHHHhhhhhhccccCCcCccchHHHHHHHHHccccc
Q 038634 121 ELVTEEFFQQMKFLENELNGKDFFGGETIGFVDIVAIVVAIWFPLTQEVLGVETFTEEKFPVLFKWIRKITEIDVV 196 (222)
Q Consensus 121 ~~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~ 196 (222)
.+...++...|..++..+...... +..+|+-|+.+|+.|+.+ .-+.|..+ -|++.+|+++|.+...+
T Consensus 59 ~~~i~~l~~~L~~l~~ll~~~~~~-n~~ls~DDi~lFp~LR~L---t~vkgi~~-----P~~V~~Y~~~~s~~t~V 125 (128)
T cd03199 59 PQYIAALNALLEELDPLILSSEAV-NGQLSTDDIILFPILRNL---TLVKGLVF-----PPKVKAYLERMSALTKV 125 (128)
T ss_pred HHHHHHHHHHHHHHHHHHcCcccc-CCcCCHHHHHHHHHHhhh---hhhcCCCC-----CHHHHHHHHHHHHHhCC
Confidence 356677888899999998654444 557999999999999888 44456555 58999999999987554
No 137
>PTZ00062 glutaredoxin; Provisional
Probab=97.44 E-value=0.00078 Score=50.93 Aligned_cols=71 Identities=23% Similarity=0.200 Sum_probs=55.5
Q ss_pred cceEEEee-----cCChHHHHHHHHHHHcCCCceEEeCCCCC-CchhhhhhCCCCCcccEEEeCCeeeeehHHHHHHH
Q 038634 3 EEVKLYGT-----WSSPFSRRIELALKLKGVPFEYIEEDLSN-KSPELLKYNPVHKKIPVLVHNSKPIAESQVILEYI 74 (222)
Q Consensus 3 ~~~~Ly~~-----~~sp~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~g~vP~L~~~g~~i~es~~I~~yL 74 (222)
.++.||.. |.||||.++.-+|...|++|+...++-.. ....+...+.. .++|.+..||+.|.+...+.+..
T Consensus 113 ~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i~y~~~DI~~d~~~~~~l~~~sg~-~TvPqVfI~G~~IGG~d~l~~l~ 189 (204)
T PTZ00062 113 HKILLFMKGSKTFPFCRFSNAVVNMLNSSGVKYETYNIFEDPDLREELKVYSNW-PTYPQLYVNGELIGGHDIIKELY 189 (204)
T ss_pred CCEEEEEccCCCCCCChhHHHHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHhCC-CCCCeEEECCEEEcChHHHHHHH
Confidence 46788866 68999999999999999999988876332 22345555665 68999999999998887777643
No 138
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=97.25 E-value=0.0013 Score=40.20 Aligned_cols=58 Identities=19% Similarity=0.271 Sum_probs=41.1
Q ss_pred ceEEEeecCChHHHHHHHHHHHc-----CCCceEEeCCCCCCchhhhhhCCCCCcccEEEeCCeeee
Q 038634 4 EVKLYGTWSSPFSRRIELALKLK-----GVPFEYIEEDLSNKSPELLKYNPVHKKIPVLVHNSKPIA 65 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~l~~~-----gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~i~ 65 (222)
++++|+.++||+|.++.-+|.+. ++++..+.++ + .++....... ..+|++..+|+.++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~--~-~~~l~~~~~i-~~vPti~i~~~~~~ 64 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAA--E-FPDLADEYGV-MSVPAIVINGKVEF 64 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcc--c-CHhHHHHcCC-cccCEEEECCEEEE
Confidence 47899999999999998888765 5666555543 2 2334444444 47999998887665
No 139
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=96.86 E-value=0.0026 Score=43.33 Aligned_cols=33 Identities=21% Similarity=0.208 Sum_probs=30.6
Q ss_pred eEEEeecCChHHHHHHHHHHHcCCCceEEeCCC
Q 038634 5 VKLYGTWSSPFSRRIELALKLKGVPFEYIEEDL 37 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~ 37 (222)
++||+.+.||+|++++-.|...|++|+.+.+.-
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~~ 33 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGVDYTAIDIVE 33 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCceEEecccC
Confidence 589999999999999999999999999988753
No 140
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=96.78 E-value=0.0037 Score=42.09 Aligned_cols=32 Identities=25% Similarity=0.442 Sum_probs=30.2
Q ss_pred eEEEeecCChHHHHHHHHHHHcCCCceEEeCC
Q 038634 5 VKLYGTWSSPFSRRIELALKLKGVPFEYIEED 36 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~ 36 (222)
+++|+.+.||+|++++-.|..+|++|+.+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGIEYEFIDYL 32 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCCCcEEEeec
Confidence 58999999999999999999999999998885
No 141
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=96.67 E-value=0.0045 Score=43.50 Aligned_cols=32 Identities=22% Similarity=0.210 Sum_probs=30.4
Q ss_pred eEEEeecCChHHHHHHHHHHHcCCCceEEeCC
Q 038634 5 VKLYGTWSSPFSRRIELALKLKGVPFEYIEED 36 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~ 36 (222)
+++|+.+.|++|++++-.|...||+|+.+.+.
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi~~~~idi~ 33 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDIPFTERNIF 33 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCcEEeecc
Confidence 79999999999999999999999999998875
No 142
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=96.51 E-value=0.018 Score=36.77 Aligned_cols=55 Identities=27% Similarity=0.402 Sum_probs=40.0
Q ss_pred ceEEEeecCChHHHHHHHHHHHcC--CCceEEeCCCCCCchhhhhhCCCCCcccEEEeCC
Q 038634 4 EVKLYGTWSSPFSRRIELALKLKG--VPFEYIEEDLSNKSPELLKYNPVHKKIPVLVHNS 61 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~l~~~g--i~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g 61 (222)
+++||+.++|+.|..+.-+|+... .+++...+|..+ ++++....-. .||||..+|
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~-d~~l~~~Y~~--~IPVl~~~~ 57 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDE-DPELFEKYGY--RIPVLHIDG 57 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTT-THHHHHHSCT--STSEEEETT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCC-CHHHHHHhcC--CCCEEEEcC
Confidence 479999999999999999999644 556677777654 4445554442 699999777
No 143
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=96.49 E-value=0.0078 Score=41.27 Aligned_cols=32 Identities=28% Similarity=0.292 Sum_probs=30.3
Q ss_pred eEEEeecCChHHHHHHHHHHHcCCCceEEeCC
Q 038634 5 VKLYGTWSSPFSRRIELALKLKGVPFEYIEED 36 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~ 36 (222)
+++|+.+.|+.|++++-.|...|++|+.+.+.
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~gi~~~~idi~ 33 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQIPFEERNLF 33 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCceEEEecC
Confidence 68999999999999999999999999998874
No 144
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=96.43 E-value=0.019 Score=36.14 Aligned_cols=55 Identities=15% Similarity=0.218 Sum_probs=40.3
Q ss_pred eEEEeecCChHHHHH----HHHHHHcCCCceEEeCCCCCCchhhhhhCCCCCcccEEEeCCeeee
Q 038634 5 VKLYGTWSSPFSRRI----ELALKLKGVPFEYIEEDLSNKSPELLKYNPVHKKIPVLVHNSKPIA 65 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v----~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~i~ 65 (222)
+.+|+ ++||.|..+ .-++++.|++++...++- .++..+.+- ..+|++..||+.+.
T Consensus 3 i~~~a-~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~---~~~a~~~~v--~~vPti~i~G~~~~ 61 (76)
T TIGR00412 3 IQIYG-TGCANCQMTEKNVKKAVEELGIDAEFEKVTD---MNEILEAGV--TATPGVAVDGELVI 61 (76)
T ss_pred EEEEC-CCCcCHHHHHHHHHHHHHHcCCCeEEEEeCC---HHHHHHcCC--CcCCEEEECCEEEE
Confidence 67776 999999988 667888999999888872 223334444 36999998886553
No 145
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=96.32 E-value=0.0068 Score=41.69 Aligned_cols=32 Identities=19% Similarity=0.492 Sum_probs=29.9
Q ss_pred eEEEeecCChHHHHHHHHHHHcCCCceEEeCC
Q 038634 5 VKLYGTWSSPFSRRIELALKLKGVPFEYIEED 36 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~ 36 (222)
+++|+.+.||+|++++-+|...|++|+.+.+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i~~~~idi~ 32 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANGIEYQFIDIG 32 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCceEEEecC
Confidence 58999999999999999999999999988875
No 146
>PRK12559 transcriptional regulator Spx; Provisional
Probab=96.31 E-value=0.011 Score=41.49 Aligned_cols=33 Identities=21% Similarity=0.125 Sum_probs=30.8
Q ss_pred eEEEeecCChHHHHHHHHHHHcCCCceEEeCCC
Q 038634 5 VKLYGTWSSPFSRRIELALKLKGVPFEYIEEDL 37 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~ 37 (222)
+++|+.+.|+.|++++-.|...|++|+.+.+.-
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi~~~~~di~~ 34 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQIDYTEKNIVS 34 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCCCeEEEEeeC
Confidence 789999999999999999999999999998753
No 147
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=96.29 E-value=0.013 Score=41.20 Aligned_cols=33 Identities=12% Similarity=0.161 Sum_probs=30.9
Q ss_pred eEEEeecCChHHHHHHHHHHHcCCCceEEeCCC
Q 038634 5 VKLYGTWSSPFSRRIELALKLKGVPFEYIEEDL 37 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~ 37 (222)
+++|+.+.|+.|++++-.|...|++|+.+.+.-
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~i~~~~~d~~~ 34 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQLSYKEQNLGK 34 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 689999999999999999999999999998753
No 148
>PRK10026 arsenate reductase; Provisional
Probab=96.13 E-value=0.017 Score=40.95 Aligned_cols=35 Identities=17% Similarity=0.133 Sum_probs=32.5
Q ss_pred CCcceEEEeecCChHHHHHHHHHHHcCCCceEEeCC
Q 038634 1 MAEEVKLYGTWSSPFSRRIELALKLKGVPFEYIEED 36 (222)
Q Consensus 1 M~~~~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~ 36 (222)
|+ .+++|+.+.|.=|++++-.|...|++|+.+.+-
T Consensus 1 m~-~i~iY~~p~Cst~RKA~~wL~~~gi~~~~~d~~ 35 (141)
T PRK10026 1 MS-NITIYHNPACGTSRNTLEMIRNSGTEPTIIHYL 35 (141)
T ss_pred CC-EEEEEeCCCCHHHHHHHHHHHHCCCCcEEEeee
Confidence 76 899999999999999999999999999998764
No 149
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=96.06 E-value=0.018 Score=38.79 Aligned_cols=32 Identities=19% Similarity=0.402 Sum_probs=30.1
Q ss_pred eEEEeecCChHHHHHHHHHHHcCCCceEEeCC
Q 038634 5 VKLYGTWSSPFSRRIELALKLKGVPFEYIEED 36 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~ 36 (222)
+++|+.+.|+.|++++-.|...|++|+.+.+.
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~i~~~~~di~ 32 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARGVAYTFHDYR 32 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcCCCeEEEecc
Confidence 58999999999999999999999999998875
No 150
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=95.90 E-value=0.025 Score=38.66 Aligned_cols=32 Identities=16% Similarity=0.091 Sum_probs=30.2
Q ss_pred eEEEeecCChHHHHHHHHHHHcCCCceEEeCC
Q 038634 5 VKLYGTWSSPFSRRIELALKLKGVPFEYIEED 36 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~ 36 (222)
++||+.+.|+-|++++-.|...|++|+.+.+.
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~gi~~~~~d~~ 33 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAAGHEVEVRDLL 33 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCcEEeehh
Confidence 78999999999999999999999999998774
No 151
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=95.82 E-value=0.088 Score=34.50 Aligned_cols=67 Identities=15% Similarity=0.163 Sum_probs=49.6
Q ss_pred eEEEeecCCh------HHHHHHHHHHHcCCCceEEeCCCCC-CchhhhhhC----CCCCcccEEEeCCeeeeehHHHHH
Q 038634 5 VKLYGTWSSP------FSRRIELALKLKGVPFEYIEEDLSN-KSPELLKYN----PVHKKIPVLVHNSKPIAESQVILE 72 (222)
Q Consensus 5 ~~Ly~~~~sp------~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~----p~~g~vP~L~~~g~~i~es~~I~~ 72 (222)
+++|....+. .|++++.+|.-+||+|+.+.|+... ...++.+.. +. .++|-+..+|..|.+...+..
T Consensus 2 i~vY~ts~~g~~~~k~~~~~v~~lL~~k~I~f~eiDI~~d~~~r~em~~~~~~~~g~-~tvPQIFi~~~~iGg~ddl~~ 79 (92)
T cd03030 2 IKVYIASSSGSTEIKKRQQEVLGFLEAKKIEFEEVDISMNEENRQWMRENVPNENGK-PLPPQIFNGDEYCGDYEAFFE 79 (92)
T ss_pred EEEEEecccccHHHHHHHHHHHHHHHHCCCceEEEecCCCHHHHHHHHHhcCCCCCC-CCCCEEEECCEEeeCHHHHHH
Confidence 6788777654 3678899999999999999997643 334444442 33 579999999999988766555
No 152
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.45 E-value=0.095 Score=34.47 Aligned_cols=73 Identities=21% Similarity=0.247 Sum_probs=52.2
Q ss_pred cceEEEe-----ecCChHHHHHHHHHHHcC-CCceEEeCCCC-CCchhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHH
Q 038634 3 EEVKLYG-----TWSSPFSRRIELALKLKG-VPFEYIEEDLS-NKSPELLKYNPVHKKIPVLVHNSKPIAESQVILEYID 75 (222)
Q Consensus 3 ~~~~Ly~-----~~~sp~~~~v~~~l~~~g-i~~~~~~v~~~-~~~~~~~~~~p~~g~vP~L~~~g~~i~es~~I~~yL~ 75 (222)
+++.||- .|-|+|+.++--+|...| ++|..+.|--+ +-...+...+-. -++|=|-.+|+.|.+|..|.+...
T Consensus 15 n~VvLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~~lk~~s~W-PT~PQLyi~GEfvGG~DIv~Em~q 93 (105)
T COG0278 15 NPVVLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQGLKEYSNW-PTFPQLYVNGEFVGGCDIVREMYQ 93 (105)
T ss_pred CceEEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHhccHhhcCC-CCCceeeECCEEeccHHHHHHHHH
Confidence 3567774 789999999999999999 67776655322 122233334444 578999999999999988887654
Q ss_pred h
Q 038634 76 E 76 (222)
Q Consensus 76 ~ 76 (222)
+
T Consensus 94 ~ 94 (105)
T COG0278 94 S 94 (105)
T ss_pred c
Confidence 3
No 153
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=95.42 E-value=0.058 Score=36.27 Aligned_cols=68 Identities=21% Similarity=0.302 Sum_probs=47.3
Q ss_pred CChHHHHHHHHHHH---cCCCceEEeCCCCCCchhhh-hhCCCCCcccEEE-eCC-------------eeeeehHHHHHH
Q 038634 12 SSPFSRRIELALKL---KGVPFEYIEEDLSNKSPELL-KYNPVHKKIPVLV-HNS-------------KPIAESQVILEY 73 (222)
Q Consensus 12 ~sp~~~~v~~~l~~---~gi~~~~~~v~~~~~~~~~~-~~~p~~g~vP~L~-~~g-------------~~i~es~~I~~y 73 (222)
+||.|..+.=+|+. ..-..+++.|++.....+.. .+...+..+|+|+ .+| ..|.++..|++|
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~~~~~~~~~~~~~~~rfi~d~~~I~~~ 102 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLADGAPSPDDAGSHGGRRFIDDPRRILRY 102 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCCCCCCcccccccCCeEEeCCHHHHHHH
Confidence 57778877777764 33457777888765444433 3333335699998 333 379999999999
Q ss_pred HHhhcC
Q 038634 74 IDEIWN 79 (222)
Q Consensus 74 L~~~~~ 79 (222)
|.++|+
T Consensus 103 La~r~g 108 (112)
T PF11287_consen 103 LAERHG 108 (112)
T ss_pred HHHHcC
Confidence 999997
No 154
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=95.13 E-value=0.1 Score=32.89 Aligned_cols=57 Identities=12% Similarity=0.216 Sum_probs=38.8
Q ss_pred ceEEEeecCChHHHHHHHHHHH----cCCCceEEeCCCCCCchhhhhhCCCCCcccEEEeCCe
Q 038634 4 EVKLYGTWSSPFSRRIELALKL----KGVPFEYIEEDLSNKSPELLKYNPVHKKIPVLVHNSK 62 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~l~~----~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~ 62 (222)
++++|+.++||+|..+.-.+.. .+..+....+|....... ...... ..+|++..+|.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~-~~~~~v-~~vPt~~~~g~ 62 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQK-AMEYGI-MAVPAIVINGD 62 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHH-HHHcCC-ccCCEEEECCE
Confidence 4789999999999988777653 354466666765443333 333444 46999998775
No 155
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=95.04 E-value=0.078 Score=36.41 Aligned_cols=33 Identities=18% Similarity=0.350 Sum_probs=30.4
Q ss_pred ceEEEeecCChHHHHHHHHHHHcCCCceEEeCC
Q 038634 4 EVKLYGTWSSPFSRRIELALKLKGVPFEYIEED 36 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~ 36 (222)
.++||+.+.|.-|++++-.|+..||+|+.+.+-
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi~~~~~~y~ 34 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGIEYTFIDYL 34 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCCCcEEEEee
Confidence 489999999999999999999999999988664
No 156
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=94.86 E-value=0.081 Score=30.67 Aligned_cols=54 Identities=30% Similarity=0.349 Sum_probs=36.4
Q ss_pred eEEEeecCChHHHHHHHHHH-----HcCCCceEEeCCCCCCchhhhhhCCCCCcccEEEe
Q 038634 5 VKLYGTWSSPFSRRIELALK-----LKGVPFEYIEEDLSNKSPELLKYNPVHKKIPVLVH 59 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~-----~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~ 59 (222)
+++|+...|++|++.+..+. ..++.+..+.++............+. ..+|+++.
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~P~~~~ 59 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGV-GGVPTLVV 59 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCC-ccccEEEE
Confidence 46788899999999999998 45566666555433322222234565 68999884
No 157
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=94.75 E-value=0.13 Score=33.52 Aligned_cols=58 Identities=17% Similarity=0.189 Sum_probs=39.3
Q ss_pred ceEEEeecCChHHHHHHHHHHHc-----CCCceEEeCCCCCCchhhhhhCCCCCcccEEEeCCeeee
Q 038634 4 EVKLYGTWSSPFSRRIELALKLK-----GVPFEYIEEDLSNKSPELLKYNPVHKKIPVLVHNSKPIA 65 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~l~~~-----gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~i~ 65 (222)
.+.+|..++||+|..+.-++... ++.+..+.++ +.+....+.+- ..+|+++.||+.+.
T Consensus 15 ~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~--~~~e~a~~~~V--~~vPt~vidG~~~~ 77 (89)
T cd03026 15 NFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGA--LFQDEVEERGI--MSVPAIFLNGELFG 77 (89)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhH--hCHHHHHHcCC--ccCCEEEECCEEEE
Confidence 48899999999999888777644 4555555543 33334444444 36999998886655
No 158
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=94.50 E-value=0.15 Score=31.92 Aligned_cols=57 Identities=25% Similarity=0.294 Sum_probs=37.5
Q ss_pred eEEEeecCChHHHHHHH----HHHHcCCCceEEeCCCCCCchhhhhhCCCCCcccEEEeCCeeeeeh
Q 038634 5 VKLYGTWSSPFSRRIEL----ALKLKGVPFEYIEEDLSNKSPELLKYNPVHKKIPVLVHNSKPIAES 67 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~----~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~i~es 67 (222)
+++ ..+.||+|.++.- ++...|+.++.+.+ ...++..+ ... ..+|+++.||+..+..
T Consensus 3 I~v-~~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~---~~~~~~~~-ygv-~~vPalvIng~~~~~G 63 (76)
T PF13192_consen 3 IKV-FSPGCPYCPELVQLLKEAAEELGIEVEIIDI---EDFEEIEK-YGV-MSVPALVINGKVVFVG 63 (76)
T ss_dssp EEE-ECSSCTTHHHHHHHHHHHHHHTTEEEEEEET---TTHHHHHH-TT--SSSSEEEETTEEEEES
T ss_pred EEE-eCCCCCCcHHHHHHHHHHHHhcCCeEEEEEc---cCHHHHHH-cCC-CCCCEEEECCEEEEEe
Confidence 677 5666999996665 44566777776665 22344433 344 4799999999876554
No 159
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=94.43 E-value=0.13 Score=35.78 Aligned_cols=33 Identities=21% Similarity=0.153 Sum_probs=30.6
Q ss_pred ceEEEeecCChHHHHHHHHHHHcCCCceEEeCC
Q 038634 4 EVKLYGTWSSPFSRRIELALKLKGVPFEYIEED 36 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~ 36 (222)
.++||+.+.|.=|++++-.|...|++|+.+.+-
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~gi~~~~~d~~ 34 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASGHDVEVQDIL 34 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCCCCcEEEecc
Confidence 489999999999999999999999999998764
No 160
>PHA02125 thioredoxin-like protein
Probab=94.33 E-value=0.23 Score=30.97 Aligned_cols=51 Identities=22% Similarity=0.427 Sum_probs=36.0
Q ss_pred eEEEeecCChHHHHHHHHHHHcCCCceEEeCCCCCCchhhhhhCCCCCcccEEEe
Q 038634 5 VKLYGTWSSPFSRRIELALKLKGVPFEYIEEDLSNKSPELLKYNPVHKKIPVLVH 59 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~ 59 (222)
+.+|+.++|+.|..+.-.|+ ++.++...++... ..++...... ..+|++..
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~--~~~~~~~~vd~~~-~~~l~~~~~v-~~~PT~~~ 52 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLA--NVEYTYVDVDTDE-GVELTAKHHI-RSLPTLVN 52 (75)
T ss_pred EEEEECCCCHhHHHHHHHHH--HHhheEEeeeCCC-CHHHHHHcCC-ceeCeEEC
Confidence 68999999999998877776 3566666666543 3444444444 47999983
No 161
>PRK10853 putative reductase; Provisional
Probab=94.11 E-value=0.094 Score=36.10 Aligned_cols=32 Identities=19% Similarity=0.375 Sum_probs=29.8
Q ss_pred eEEEeecCChHHHHHHHHHHHcCCCceEEeCC
Q 038634 5 VKLYGTWSSPFSRRIELALKLKGVPFEYIEED 36 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~ 36 (222)
+++|+.+.|.-|++++-.|+..|++|+.+.+-
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~d~~ 33 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQGIDYRFHDYR 33 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcCCCcEEeehc
Confidence 79999999999999999999999999988763
No 162
>PF11801 Tom37_C: Tom37 C-terminal domain; InterPro: IPR019564 Tom37 is one of the outer membrane proteins that make up the TOM complex for guiding cytosolic mitochondrial beta-barrel proteins from the cytosol across the outer mitochondrial membrane into the intramembrane space. In conjunction with Tom70, it guides peptides without an mitochondrial targeting sequence (MTS) into Tom40, the protein that forms the passage through the outer membrane []. It has homology with metaxin, also part of the outer mitochondrial membrane beta-barrel protein transport complex []. This entry represents outer mitochondrial membrane transport complex proteins Tom37 and metaxin.; GO: 0006626 protein targeting to mitochondrion, 0005741 mitochondrial outer membrane
Probab=93.90 E-value=0.15 Score=37.41 Aligned_cols=38 Identities=18% Similarity=0.246 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhcCCC---CcccCCC-CChhHHHHHHHHHHH
Q 038634 126 EFFQQMKFLENELNGK---DFFGGET-IGFVDIVAIVVAIWF 163 (222)
Q Consensus 126 ~~~~~l~~le~~L~~~---~~l~G~~-~t~aD~~l~~~l~~~ 163 (222)
...+++..|++.|+.. +|++|+. +|-.||.+++.+..+
T Consensus 112 ~a~~~l~~L~~~L~~~~~~~~~f~~~~psslD~L~~ayL~l~ 153 (168)
T PF11801_consen 112 LAMECLSLLEELLGEWEEARYFFGDSKPSSLDCLAFAYLALL 153 (168)
T ss_pred HHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHH
Confidence 3568999999999887 8999987 999999999988766
No 163
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=93.88 E-value=0.11 Score=35.35 Aligned_cols=32 Identities=22% Similarity=0.173 Sum_probs=29.5
Q ss_pred eEEEeecCChHHHHHHHHHHHcCCCceEEeCC
Q 038634 5 VKLYGTWSSPFSRRIELALKLKGVPFEYIEED 36 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~ 36 (222)
+++|+.+.|.-|++++-.|+..|++|+.+.+-
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~ 32 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAGIEPEIVEYL 32 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecc
Confidence 58999999999999999999999999988763
No 164
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=93.71 E-value=0.2 Score=34.24 Aligned_cols=32 Identities=25% Similarity=0.174 Sum_probs=29.5
Q ss_pred eEEEeecCChHHHHHHHHHHHcCCCceEEeCC
Q 038634 5 VKLYGTWSSPFSRRIELALKLKGVPFEYIEED 36 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~ 36 (222)
+++|+.+.|.-|++++-.|...|++|+.+.+.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~i~~~~~di~ 32 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKGIEPEVVKYL 32 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCCCCeEEEecc
Confidence 58999999999999999999999999988764
No 165
>PF04908 SH3BGR: SH3-binding, glutamic acid-rich protein; InterPro: IPR006993 This family of proteins, which contains SH3BGRL3, is functionally uncharacterised. SH3BGRL3 is a highly conserved small protein, which is widely expressed and shows a significant similarity to glutaredoxin 1 (GRX1) of Escherichia coli which is predicted to belong to the thioredoxin superfamily. However, SH3BGRL3 lacks both conserved cysteine residues, which characterise the enzymatic active site of GRX. This structural feature raises the possibility that SH3BGRL3 and its homologues could function as endogenous modulators of GRX activity []. ; PDB: 1SJ6_A 1U6T_A 1WRY_A 1T1V_B 1J0F_A 2CT6_A.
Probab=92.66 E-value=0.76 Score=30.52 Aligned_cols=70 Identities=17% Similarity=0.214 Sum_probs=42.4
Q ss_pred CCcceEEEeecCChH------HHHHHHHHHHcCCCceEEeCCCCC-CchhhhhhC---------CCCCcccEEEeCCeee
Q 038634 1 MAEEVKLYGTWSSPF------SRRIELALKLKGVPFEYIEEDLSN-KSPELLKYN---------PVHKKIPVLVHNSKPI 64 (222)
Q Consensus 1 M~~~~~Ly~~~~sp~------~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~---------p~~g~vP~L~~~g~~i 64 (222)
|. +++|....++. .+++..+|..++|+|+.+.+.... ...++.... +. ...|-+..+|..+
T Consensus 1 m~--I~vy~ss~sg~~~ikk~q~~v~~iL~a~kI~fe~vDIa~~e~~r~~mr~~~g~~~~~~~~~~-~lpPqiF~~~~Y~ 77 (99)
T PF04908_consen 1 MV--IKVYISSISGSREIKKRQQRVLMILEAKKIPFEEVDIAMDEEARQWMRENAGPEEKDPGNGK-PLPPQIFNGDEYC 77 (99)
T ss_dssp -S--EEEEE-SS-SSHHHHHHHHHHHHHHHHTT--EEEEETTT-HHHHHHHHHHT--CCCS-TSTT---S-EEEETTEEE
T ss_pred CE--EEEEEecccCCHHHHHHHHHHHHHHHHcCCCcEEEeCcCCHHHHHHHHHhccccccCCCCCC-CCCCEEEeCCEEE
Confidence 66 88998776653 569999999999999998887542 223334333 22 2346788888888
Q ss_pred eehHHHHHH
Q 038634 65 AESQVILEY 73 (222)
Q Consensus 65 ~es~~I~~y 73 (222)
.+=..+-+.
T Consensus 78 Gdye~f~ea 86 (99)
T PF04908_consen 78 GDYEDFEEA 86 (99)
T ss_dssp EEHHHHHHH
T ss_pred eeHHHHHHH
Confidence 876665543
No 166
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=89.41 E-value=1.4 Score=30.94 Aligned_cols=75 Identities=15% Similarity=0.058 Sum_probs=52.0
Q ss_pred ceEEEeecCChHHHHHHHHHHHcCCCceEEeCCCCCCchhhhhhCCCCCcccEEEeCCeeeee---hHHHHHHHHhhc
Q 038634 4 EVKLYGTWSSPFSRRIELALKLKGVPFEYIEEDLSNKSPELLKYNPVHKKIPVLVHNSKPIAE---SQVILEYIDEIW 78 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~i~e---s~~I~~yL~~~~ 78 (222)
+|+.|..|.|+.|..-.=.|+.+|+.++.+..+....-..-..+-+.++..=+.+.||..|-. -.+|.+.|++..
T Consensus 27 ~~~vyksPnCGCC~~w~~~mk~~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI~Gy~vEGHVPa~aI~~ll~~~p 104 (149)
T COG3019 27 EMVVYKSPNCGCCDEWAQHMKANGFEVKVVETDDFLALKRRLGIPYEMQSCHTAVINGYYVEGHVPAEAIARLLAEKP 104 (149)
T ss_pred eEEEEeCCCCccHHHHHHHHHhCCcEEEEeecCcHHHHHHhcCCChhhccccEEEEcCEEEeccCCHHHHHHHHhCCC
Confidence 689999999999999999999999999888775321000001111112345567788876654 368999998876
No 167
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=87.85 E-value=5.5 Score=25.74 Aligned_cols=70 Identities=21% Similarity=0.373 Sum_probs=43.2
Q ss_pred ceEEEeecCChHHHHHHHHHH-----HcCCCceEEeCCCCCCchhhhhhCCCCCcccEEE--eCCeee------eehHHH
Q 038634 4 EVKLYGTWSSPFSRRIELALK-----LKGVPFEYIEEDLSNKSPELLKYNPVHKKIPVLV--HNSKPI------AESQVI 70 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~l~-----~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~--~~g~~i------~es~~I 70 (222)
-+..++.++|+.|+...-.+. +.+ ++....+|.... ..+...... ..+|++. .+|..+ .+...|
T Consensus 20 vvv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~~-~~l~~~~~v-~~~Pt~~~~~~g~~~~~~~g~~~~~~l 96 (103)
T PF00085_consen 20 VVVYFYAPWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDEN-KELCKKYGV-KSVPTIIFFKNGKEVKRYNGPRNAESL 96 (103)
T ss_dssp EEEEEESTTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTS-HHHHHHTTC-SSSSEEEEEETTEEEEEEESSSSHHHH
T ss_pred EEEEEeCCCCCccccccceeccccccccc-ccccchhhhhcc-chhhhccCC-CCCCEEEEEECCcEEEEEECCCCHHHH
Confidence 367788899999998774442 333 566666665443 444443344 5799987 566433 244567
Q ss_pred HHHHHh
Q 038634 71 LEYIDE 76 (222)
Q Consensus 71 ~~yL~~ 76 (222)
..+|.+
T Consensus 97 ~~~i~~ 102 (103)
T PF00085_consen 97 IEFIEK 102 (103)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 776654
No 168
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=85.06 E-value=1.4 Score=29.71 Aligned_cols=29 Identities=24% Similarity=0.438 Sum_probs=23.0
Q ss_pred EeecCChHHHHHHHHHHHcCCCceEEeCC
Q 038634 8 YGTWSSPFSRRIELALKLKGVPFEYIEED 36 (222)
Q Consensus 8 y~~~~sp~~~~v~~~l~~~gi~~~~~~v~ 36 (222)
|+.+.|.-|++++-.|+..|++|+.+.+.
T Consensus 1 Y~~~~C~t~rka~~~L~~~gi~~~~~d~~ 29 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENGIEYEFIDYK 29 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT--EEEEETT
T ss_pred CcCCCCHHHHHHHHHHHHcCCCeEeehhh
Confidence 88999999999999999999999998774
No 169
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=82.88 E-value=3.2 Score=31.75 Aligned_cols=72 Identities=17% Similarity=0.191 Sum_probs=53.1
Q ss_pred ceEEEe-----ecCChHHHHHHHHHHHcCCCceEEeCCCCC-CchhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHh
Q 038634 4 EVKLYG-----TWSSPFSRRIELALKLKGVPFEYIEEDLSN-KSPELLKYNPVHKKIPVLVHNSKPIAESQVILEYIDE 76 (222)
Q Consensus 4 ~~~Ly~-----~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~g~vP~L~~~g~~i~es~~I~~yL~~ 76 (222)
++.||- .|-|++++++.-.|...|++|....|--++ -..-.+..+-. -+.|=|-.+|+.+.+...|...+.+
T Consensus 140 ~v~lFmKG~p~~P~CGFS~~~v~iL~~~nV~~~~fdIL~DeelRqglK~fSdW-PTfPQlyI~GEFiGGlDIl~~m~~~ 217 (227)
T KOG0911|consen 140 PVMLFMKGTPEEPKCGFSRQLVGILQSHNVNYTIFDVLTDEELRQGLKEFSDW-PTFPQLYVKGEFIGGLDILKEMHEK 217 (227)
T ss_pred eEEEEecCCCCcccccccHHHHHHHHHcCCCeeEEeccCCHHHHHHhhhhcCC-CCccceeECCEeccCcHHHHHHhhc
Confidence 455653 678999999999999999999988775332 12223344554 6889999999999998877765543
No 170
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=81.09 E-value=10 Score=26.12 Aligned_cols=32 Identities=22% Similarity=0.470 Sum_probs=21.5
Q ss_pred eEEEeecCChHHHHHHHHHH----HcCCCceEEeCC
Q 038634 5 VKLYGTWSSPFSRRIELALK----LKGVPFEYIEED 36 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~----~~gi~~~~~~v~ 36 (222)
+..|+.++||+|+.+.=.|. ..++++-.+.++
T Consensus 27 iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd 62 (122)
T TIGR01295 27 TFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSE 62 (122)
T ss_pred EEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECC
Confidence 56678999999997555443 444555555554
No 171
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=79.56 E-value=13 Score=24.09 Aligned_cols=58 Identities=14% Similarity=0.228 Sum_probs=34.8
Q ss_pred eEEEeecCChHHHHHHHHHHH----cCCCceEEeCCCCCCchhhhhhCCCCCcccEEE--eCCeee
Q 038634 5 VKLYGTWSSPFSRRIELALKL----KGVPFEYIEEDLSNKSPELLKYNPVHKKIPVLV--HNSKPI 64 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~----~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~--~~g~~i 64 (222)
+.+|+.++|+.|....-.+.. .+-.+....+|... .+++....-. ..+|++. .+|..+
T Consensus 17 lv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~-~~~l~~~~~v-~~vPt~~i~~~g~~v 80 (97)
T cd02949 17 LVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDE-DQEIAEAAGI-MGTPTVQFFKDKELV 80 (97)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCC-CHHHHHHCCC-eeccEEEEEECCeEE
Confidence 567788999999987766644 22134555566543 3444333333 4699876 466554
No 172
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=78.57 E-value=6.8 Score=34.63 Aligned_cols=58 Identities=21% Similarity=0.324 Sum_probs=38.1
Q ss_pred ceEEEeecCChHHHHHHH----HHHHc-CCCceEEeCCCCCCchhhh-hhCCCCCcccEEEeCCeeeee
Q 038634 4 EVKLYGTWSSPFSRRIEL----ALKLK-GVPFEYIEEDLSNKSPELL-KYNPVHKKIPVLVHNSKPIAE 66 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~----~l~~~-gi~~~~~~v~~~~~~~~~~-~~~p~~g~vP~L~~~g~~i~e 66 (222)
.+++|..+.||+|-.+.- +..+. +|..+.+.+. +. ++.. +.+- -.||.++.||+++..
T Consensus 479 ~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~--~~-~~~~~~~~v--~~vP~~~i~~~~~~~ 542 (555)
T TIGR03143 479 NIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVS--HF-PDLKDEYGI--MSVPAIVVDDQQVYF 542 (555)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECc--cc-HHHHHhCCc--eecCEEEECCEEEEe
Confidence 478888899999876554 34454 6777776664 33 3444 4444 369999988865443
No 173
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=78.38 E-value=7.9 Score=25.39 Aligned_cols=52 Identities=17% Similarity=0.068 Sum_probs=31.1
Q ss_pred eEEEeecCChHHHHHHHHH--------HHcCCCceEEeCCCCCC---chhhhhhCCCCCcccEEE
Q 038634 5 VKLYGTWSSPFSRRIELAL--------KLKGVPFEYIEEDLSNK---SPELLKYNPVHKKIPVLV 58 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l--------~~~gi~~~~~~v~~~~~---~~~~~~~~p~~g~vP~L~ 58 (222)
+..|+.++|++|+...-.+ .+.+ .+....++.... ..++...... ..+|++.
T Consensus 15 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~~i-~~~Pti~ 77 (104)
T cd02953 15 FVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRFGV-FGPPTYL 77 (104)
T ss_pred EEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHcCC-CCCCEEE
Confidence 6678899999999775332 2232 455556665432 2344444444 4699876
No 174
>PF09635 MetRS-N: MetRS-N binding domain; InterPro: IPR018285 This entry represents the N-terminal domain of methionyl-tRNA synthetase (MetRS). This N-terminal appended domain mediates non-catalytic complex formation through its interaction with a domain in the tRNA aminoacylation cofactor Arc1p. The interacting domains of MetRS, GluRS (glutamyl-tRNA synthetase) and Arc1p form a ternary complex resembling a classical GST homo-dimer []. Domain-swapping between symmetrically related MetRS-N and Arc1p-N domains generates a 2:2 tetramer held together by van der Waals forces. This domain is necessary for formation of the aminoacyl-tRNA synthetase complex necessary for tRNA nuclear export and shuttling as part of the translational apparatus. ; PDB: 2HSN_A.
Probab=78.14 E-value=1.5 Score=30.11 Aligned_cols=26 Identities=19% Similarity=0.367 Sum_probs=13.5
Q ss_pred ccEEEe--CCeeeeehHHHHHHHHhhcC
Q 038634 54 IPVLVH--NSKPIAESQVILEYIDEIWN 79 (222)
Q Consensus 54 vP~L~~--~g~~i~es~~I~~yL~~~~~ 79 (222)
-|-|.+ +|..++|++||++|+..-|.
T Consensus 36 ~~~L~~~~~gF~L~e~NAIvrYl~nDF~ 63 (122)
T PF09635_consen 36 GPLLKDKKSGFELFEPNAIVRYLANDFE 63 (122)
T ss_dssp S--EEE-S--S----HHHHHHHHTT--T
T ss_pred cceeeecCCceEEecccHHHHHHHhhcC
Confidence 477854 57899999999999998875
No 175
>PHA03075 glutaredoxin-like protein; Provisional
Probab=77.81 E-value=4 Score=27.77 Aligned_cols=69 Identities=14% Similarity=0.144 Sum_probs=49.5
Q ss_pred CCcceEEEeecCChHHHHHHHHHHHcCCCceEEeCCCCC-CchhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHhhc
Q 038634 1 MAEEVKLYGTWSSPFSRRIELALKLKGVPFEYIEEDLSN-KSPELLKYNPVHKKIPVLVHNSKPIAESQVILEYIDEIW 78 (222)
Q Consensus 1 M~~~~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p~~g~vP~L~~~g~~i~es~~I~~yL~~~~ 78 (222)
|..-++|+|-|.|+-|..+.-+|+...=+|+...|+.-+ ++. . |++=+|..++.. .=-+.+..||...+
T Consensus 1 mK~tLILfGKP~C~vCe~~s~~l~~ledeY~ilrVNIlSfFsK-------~-g~v~~lg~d~~y-~lInn~~~~lgne~ 70 (123)
T PHA03075 1 MKKTLILFGKPLCSVCESISEALKELEDEYDILRVNILSFFSK-------D-GQVKVLGMDKGY-TLINNFFKHLGNEY 70 (123)
T ss_pred CCceEEEeCCcccHHHHHHHHHHHHhhccccEEEEEeeeeecc-------C-CceEEEecccce-ehHHHHHHhhcccE
Confidence 556689999999999999999999999999999998643 222 2 677777754321 11245667776543
No 176
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=77.21 E-value=14 Score=22.73 Aligned_cols=55 Identities=25% Similarity=0.276 Sum_probs=34.3
Q ss_pred eEEEeecCChHHHHHHHHHHH-----cCCCceEEeCCCCCCchhhhhhCCCCCcccEEE--eCCee
Q 038634 5 VKLYGTWSSPFSRRIELALKL-----KGVPFEYIEEDLSNKSPELLKYNPVHKKIPVLV--HNSKP 63 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~-----~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~--~~g~~ 63 (222)
+..++.++|+.|+...-.+.. .++.+-.+.++ . ...+...... ..+|++. .+|..
T Consensus 14 ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~--~-~~~~~~~~~v-~~~P~~~~~~~g~~ 75 (93)
T cd02947 14 VVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVD--E-NPELAEEYGV-RSIPTFLFFKNGKE 75 (93)
T ss_pred EEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECC--C-ChhHHHhcCc-ccccEEEEEECCEE
Confidence 677888999999988777766 55555444433 2 2333333333 4699977 45653
No 177
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=74.76 E-value=14 Score=24.92 Aligned_cols=59 Identities=15% Similarity=0.225 Sum_probs=37.4
Q ss_pred eEEEeecCChHHHHHHHHHHH-----cCCCceEEeCCCCCCchhhhhhCCCCCcccEEE--eCCeeeeeh
Q 038634 5 VKLYGTWSSPFSRRIELALKL-----KGVPFEYIEEDLSNKSPELLKYNPVHKKIPVLV--HNSKPIAES 67 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~-----~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~--~~g~~i~es 67 (222)
+..|+.++|+.|+.+.-.+.. .++ ....+|... .++..+.... ..+|++. .+|..+...
T Consensus 26 vV~f~a~~c~~C~~~~p~l~~la~~~~~i--~f~~Vd~~~-~~~l~~~~~v-~~vPt~l~fk~G~~v~~~ 91 (113)
T cd02989 26 VCHFYHPEFFRCKIMDKHLEILAKKHLET--KFIKVNAEK-APFLVEKLNI-KVLPTVILFKNGKTVDRI 91 (113)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHcCCC--EEEEEEccc-CHHHHHHCCC-ccCCEEEEEECCEEEEEE
Confidence 556788999999977766643 333 455566433 3444444444 5799987 588766543
No 178
>PRK09381 trxA thioredoxin; Provisional
Probab=74.36 E-value=22 Score=23.42 Aligned_cols=58 Identities=14% Similarity=0.079 Sum_probs=33.9
Q ss_pred eEEEeecCChHHHHHHHHHH----HcCCCceEEeCCCCCCchhhhhhCCCCCcccEEE--eCCeee
Q 038634 5 VKLYGTWSSPFSRRIELALK----LKGVPFEYIEEDLSNKSPELLKYNPVHKKIPVLV--HNSKPI 64 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~----~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~--~~g~~i 64 (222)
+..++.++||.|+...-.++ ..+-.+....++......-....+. ..+|+++ .+|..+
T Consensus 25 vv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v--~~~Pt~~~~~~G~~~ 88 (109)
T PRK09381 25 LVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGI--RGIPTLLLFKNGEVA 88 (109)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCC--CcCCEEEEEeCCeEE
Confidence 55678889999997764443 2222355556665443333334454 4799986 466544
No 179
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=74.25 E-value=20 Score=22.89 Aligned_cols=58 Identities=9% Similarity=0.083 Sum_probs=36.3
Q ss_pred eEEEeecCChHHHHHHHHHHH---c-CCCceEEeCCCCCCchhhhhhCCCCCcccEEE--eCCeee
Q 038634 5 VKLYGTWSSPFSRRIELALKL---K-GVPFEYIEEDLSNKSPELLKYNPVHKKIPVLV--HNSKPI 64 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~---~-gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~--~~g~~i 64 (222)
+..|+.++|+.|++..-.+.. . +-.+....++....+.-....+. ..+|++. .+|..+
T Consensus 18 ~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i--~~~Pt~~~~~~g~~~ 81 (97)
T cd02984 18 VLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEI--TAVPTFVFFRNGTIV 81 (97)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCC--ccccEEEEEECCEEE
Confidence 567788999999987666653 2 34566666665443333344554 3699876 566544
No 180
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=73.32 E-value=20 Score=23.95 Aligned_cols=58 Identities=12% Similarity=0.025 Sum_probs=33.1
Q ss_pred ceEEEeecCChHHHHHHHHH-----HHcCCCceEEeCCCCCCchhhhhhCCCCCcccEEE--eCCee
Q 038634 4 EVKLYGTWSSPFSRRIELAL-----KLKGVPFEYIEEDLSNKSPELLKYNPVHKKIPVLV--HNSKP 63 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~l-----~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~--~~g~~ 63 (222)
-+..|+.++|+.|+...-.+ .+.+..+....++... .+.+.....- ..+|++. .+|..
T Consensus 27 vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~-~~~l~~~~~V-~~~Pt~~i~~~g~~ 91 (111)
T cd02963 27 YLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH-ERRLARKLGA-HSVPAIVGIINGQV 91 (111)
T ss_pred EEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc-cHHHHHHcCC-ccCCEEEEEECCEE
Confidence 35678889999998654333 3333345555565443 2333333333 5799987 56643
No 181
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=72.74 E-value=5.7 Score=34.71 Aligned_cols=72 Identities=13% Similarity=0.112 Sum_probs=42.8
Q ss_pred ceEEEeecCChHHHHHHHHHHHcCCC---ceEEeCCCCCCchhhhhhCCCCCcccEEEeCCeeeeeh----HHHHHHHHh
Q 038634 4 EVKLYGTWSSPFSRRIELALKLKGVP---FEYIEEDLSNKSPELLKYNPVHKKIPVLVHNSKPIAES----QVILEYIDE 76 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~l~~~gi~---~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~i~es----~~I~~yL~~ 76 (222)
.+++|..+.||||-.+.-++...-+. ++...++-...++ +...... ..||.+..||..+.+. ..+++.+.+
T Consensus 120 ~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~-~~~~~~v-~~VP~~~i~~~~~~~g~~~~~~~~~~l~~ 197 (515)
T TIGR03140 120 HFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQD-EVEALGI-QGVPAVFLNGEEFHNGRMDLAELLEKLEE 197 (515)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHH-HHHhcCC-cccCEEEECCcEEEecCCCHHHHHHHHhh
Confidence 47899999999998777666544332 3333344333333 3343344 4799999888666553 234444544
Q ss_pred h
Q 038634 77 I 77 (222)
Q Consensus 77 ~ 77 (222)
.
T Consensus 198 ~ 198 (515)
T TIGR03140 198 T 198 (515)
T ss_pred c
Confidence 3
No 182
>PF11417 Inhibitor_G39P: Loader and inhibitor of phage G40P; InterPro: IPR024424 G39P inhibits the initiation of DNA replication by blocking G40P replicative helicase. G39P has a bipartite stricture consisting of a folded N-terminal domain and an unfolded C-terminal domain. The C-terminal is essential for helicase interaction [].; PDB: 1NO1_B.
Probab=72.63 E-value=15 Score=22.74 Aligned_cols=36 Identities=17% Similarity=0.483 Sum_probs=22.7
Q ss_pred ehHHHHHHHHhhcCC--CCCCCCCHHHHHHHHHHHHHhhh
Q 038634 66 ESQVILEYIDEIWNN--NPILPQDPYQRAMARFWGKFIDE 103 (222)
Q Consensus 66 es~~I~~yL~~~~~~--~~l~p~~~~~~~~~~~~~~~~~~ 103 (222)
|..-|+.++...||+ ..+.+.+. +..++.|.+...+
T Consensus 5 E~~~ll~~I~~aYP~~~~~f~~~~~--k~~v~~W~~~L~d 42 (71)
T PF11417_consen 5 ETAKLLKLIKAAYPQWAGNFKPTDS--KETVDLWYDMLKD 42 (71)
T ss_dssp HHHHHHHHHHHHST---TT---STH--HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCcchhccchhhH--HHHHHHHHHHHHh
Confidence 567789999999994 34555553 4567777776654
No 183
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=70.99 E-value=14 Score=24.97 Aligned_cols=52 Identities=10% Similarity=0.137 Sum_probs=31.3
Q ss_pred eEEE-eecCChHHHHHHHHHHHcCCC---ceEEeCCCCCCchhhhhhCCCCCcccEEE
Q 038634 5 VKLY-GTWSSPFSRRIELALKLKGVP---FEYIEEDLSNKSPELLKYNPVHKKIPVLV 58 (222)
Q Consensus 5 ~~Ly-~~~~sp~~~~v~~~l~~~gi~---~~~~~v~~~~~~~~~~~~~p~~g~vP~L~ 58 (222)
++++ +.++||+|+.++-++....-. ++...++.. ..++....... ..+|++.
T Consensus 25 vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d-~~~~l~~~~~v-~~vPt~~ 80 (113)
T cd02975 25 LVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFD-EDKEKAEKYGV-ERVPTTI 80 (113)
T ss_pred EEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCC-cCHHHHHHcCC-CcCCEEE
Confidence 4444 568999999887777643322 233444443 34455554454 5799987
No 184
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=70.68 E-value=4.2 Score=35.55 Aligned_cols=72 Identities=17% Similarity=0.155 Sum_probs=43.1
Q ss_pred ceEEEeecCChHHHHHHHHHHHcCC---CceEEeCCCCCCchhhhhhCCCCCcccEEEeCCeeeeeh----HHHHHHHHh
Q 038634 4 EVKLYGTWSSPFSRRIELALKLKGV---PFEYIEEDLSNKSPELLKYNPVHKKIPVLVHNSKPIAES----QVILEYIDE 76 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~l~~~gi---~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~i~es----~~I~~yL~~ 76 (222)
.+++|..+.||||-.+.-++...-+ .++...++-.. -+++...... ..||.+..||..+.+. ..+++.+.+
T Consensus 119 ~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~-~~~~~~~~~v-~~VP~~~i~~~~~~~g~~~~~~~~~~~~~ 196 (517)
T PRK15317 119 HFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGAL-FQDEVEARNI-MAVPTVFLNGEEFGQGRMTLEEILAKLDT 196 (517)
T ss_pred EEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchh-CHhHHHhcCC-cccCEEEECCcEEEecCCCHHHHHHHHhc
Confidence 4789999999998876666543322 23333344333 3444444444 4799999888665552 345556554
Q ss_pred h
Q 038634 77 I 77 (222)
Q Consensus 77 ~ 77 (222)
.
T Consensus 197 ~ 197 (517)
T PRK15317 197 G 197 (517)
T ss_pred c
Confidence 3
No 185
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=69.62 E-value=20 Score=27.30 Aligned_cols=55 Identities=16% Similarity=0.173 Sum_probs=33.7
Q ss_pred ceEEEeecCChHHHHHHHHHHHcC---CCceEEeCCCCCCchhhhhhCCCCCcccEEEeC
Q 038634 4 EVKLYGTWSSPFSRRIELALKLKG---VPFEYIEEDLSNKSPELLKYNPVHKKIPVLVHN 60 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~l~~~g---i~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~ 60 (222)
.+++|+.++||+|..+..++...- -.++...+|... .++......- ..+|++..+
T Consensus 136 ~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~-~~~~~~~~~V-~~vPtl~i~ 193 (215)
T TIGR02187 136 RIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANE-NPDLAEKYGV-MSVPKIVIN 193 (215)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCC-CHHHHHHhCC-ccCCEEEEe
Confidence 366789999999998887776432 123334455443 3344433333 469999853
No 186
>KOG1668 consensus Elongation factor 1 beta/delta chain [Transcription]
Probab=68.92 E-value=4 Score=31.34 Aligned_cols=59 Identities=15% Similarity=0.174 Sum_probs=43.6
Q ss_pred HHHHHHHHHhcCCCCcccCCCCChhHHHHHHHHHHHHhhhhhhccccCCcCccchHHHHHHHHHcccccc
Q 038634 128 FQQMKFLENELNGKDFFGGETIGFVDIVAIVVAIWFPLTQEVLGVETFTEEKFPVLFKWIRKITEIDVVN 197 (222)
Q Consensus 128 ~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~p~~~ 197 (222)
...+..++..|++.+|.-|.+++-+|+.+|..+.-- +. ...+++..+|+..+.+.-++.
T Consensus 10 ~~glk~l~~sLA~ks~~~g~~~s~edv~vf~al~~e---------p~--s~~~v~~~~w~~~l~a~~~~~ 68 (231)
T KOG1668|consen 10 PAGLKKLNKSLAEKSYIEGYQLSKEDVVVFAALGVE---------PQ--SARLVNAERWYSKLEALLRLL 68 (231)
T ss_pred hhhhhhhhHhhhcccCCCCCCcccccceeehhcccC---------cc--hhhhhHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999999987643111 11 255778888888777755543
No 187
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=68.71 E-value=21 Score=24.29 Aligned_cols=17 Identities=12% Similarity=0.415 Sum_probs=13.8
Q ss_pred ceEEEeecCChHHHHHH
Q 038634 4 EVKLYGTWSSPFSRRIE 20 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~ 20 (222)
-+..|+.++|++|++..
T Consensus 17 vlv~f~a~wC~~C~~~~ 33 (125)
T cd02951 17 LLLLFSQPGCPYCDKLK 33 (125)
T ss_pred EEEEEeCCCCHHHHHHH
Confidence 36678899999999875
No 188
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.37 E-value=20 Score=24.70 Aligned_cols=67 Identities=16% Similarity=0.123 Sum_probs=38.0
Q ss_pred ecCChHHHHH----HHHHHHcCCCceEEeCCCCCCchhhhhhCCC-----C-CcccEEE-eC--CeeeeehHHHHHHHHh
Q 038634 10 TWSSPFSRRI----ELALKLKGVPFEYIEEDLSNKSPELLKYNPV-----H-KKIPVLV-HN--SKPIAESQVILEYIDE 76 (222)
Q Consensus 10 ~~~sp~~~~v----~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~-----~-g~vP~L~-~~--g~~i~es~~I~~yL~~ 76 (222)
-++||.|.++ +=+|++..-+...+.++..+.+-|-..-||+ . .-||+|. .+ +.-+.+.+.--..|.+
T Consensus 42 qSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~lt~vPTLlrw~~~~~rL~~~q~~~~~Lve 121 (128)
T KOG3425|consen 42 QSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGILTAVPTLLRWKRQPQRLDGLQCLNDHLVE 121 (128)
T ss_pred CcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCceeecceeeEEcCccccchHhHhhHHHHHH
Confidence 4589998854 4556666666666666665433333333333 0 2388887 23 3555665555555544
No 189
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=65.20 E-value=36 Score=23.12 Aligned_cols=61 Identities=11% Similarity=0.115 Sum_probs=33.7
Q ss_pred eEEEeecCChHHHHHHHHHHH------cCCCceEEeCCCCCCchhhhhhCCCCCcccEEE--e-CCeeeee
Q 038634 5 VKLYGTWSSPFSRRIELALKL------KGVPFEYIEEDLSNKSPELLKYNPVHKKIPVLV--H-NSKPIAE 66 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~------~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~--~-~g~~i~e 66 (222)
+.-|+.++|+.|+...-.+.. .+..|..+.++... .+.....+..++.+|++. + +|+.+..
T Consensus 23 lV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~-~~~~~~~~~~g~~vPt~~f~~~~Gk~~~~ 92 (117)
T cd02959 23 MLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDE-EPKDEEFSPDGGYIPRILFLDPSGDVHPE 92 (117)
T ss_pred EEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCC-CchhhhcccCCCccceEEEECCCCCCchh
Confidence 566788999999977555443 23345544444322 121223445423599987 3 5666543
No 190
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=64.69 E-value=31 Score=22.32 Aligned_cols=55 Identities=11% Similarity=0.086 Sum_probs=32.2
Q ss_pred eEEEeecCChHHHHHHHHHHH-----cCCCceEEeCCCCCCchhhhhhCCCCCcccEEE--eCCe
Q 038634 5 VKLYGTWSSPFSRRIELALKL-----KGVPFEYIEEDLSNKSPELLKYNPVHKKIPVLV--HNSK 62 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~-----~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~--~~g~ 62 (222)
+..|+.++|+.|+...-.+.. .|. +....++.... +.+...... ..+|++. .+|.
T Consensus 22 ~v~f~a~wC~~C~~~~p~~~~~a~~~~~~-~~~~~vd~~~~-~~~~~~~~v-~~~Pt~~~~~~g~ 83 (101)
T cd03003 22 FVNFYSPRCSHCHDLAPTWREFAKEMDGV-IRIGAVNCGDD-RMLCRSQGV-NSYPSLYVFPSGM 83 (101)
T ss_pred EEEEECCCChHHHHhHHHHHHHHHHhcCc-eEEEEEeCCcc-HHHHHHcCC-CccCEEEEEcCCC
Confidence 567888999999976555532 232 45556665443 333332233 4799986 4554
No 191
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=64.48 E-value=13 Score=29.50 Aligned_cols=70 Identities=13% Similarity=0.102 Sum_probs=49.8
Q ss_pred ceEEEeecCCh------HHHHHHHHHHHcCCCceEEeCCCCC-CchhhhhhCC---CCCcccEEEeCCeeeeehHHHHHH
Q 038634 4 EVKLYGTWSSP------FSRRIELALKLKGVPFEYIEEDLSN-KSPELLKYNP---VHKKIPVLVHNSKPIAESQVILEY 73 (222)
Q Consensus 4 ~~~Ly~~~~sp------~~~~v~~~l~~~gi~~~~~~v~~~~-~~~~~~~~~p---~~g~vP~L~~~g~~i~es~~I~~y 73 (222)
.+++|...-.. .|..||.+|+-.++.|+...|.++. ...|+..+-. ..-.+|.+..+|..|..-..|++-
T Consensus 132 ~VVvY~TsLRgvRkTfE~C~~VR~ilesf~V~v~ERDVSMd~~fr~EL~~~lg~~~~~~~LPrVFV~GryIGgaeeV~~L 211 (281)
T KOG2824|consen 132 RVVVYTTSLRGVRKTFEDCNAVRAILESFRVKVDERDVSMDSEFREELQELLGEDEKAVSLPRVFVKGRYIGGAEEVVRL 211 (281)
T ss_pred eEEEEEcccchhhhhHHHHHHHHHHHHhCceEEEEecccccHHHHHHHHHHHhcccccCccCeEEEccEEeccHHHhhhh
Confidence 45666544221 3779999999999999999998864 4445443311 114699888999999998888764
No 192
>PTZ00051 thioredoxin; Provisional
Probab=64.34 E-value=35 Score=21.79 Aligned_cols=58 Identities=10% Similarity=0.144 Sum_probs=32.7
Q ss_pred eEEEeecCChHHHHHHHHHHH---cCCCceEEeCCCCCCchhhhhhCCCCCcccEEE--eCCeee
Q 038634 5 VKLYGTWSSPFSRRIELALKL---KGVPFEYIEEDLSNKSPELLKYNPVHKKIPVLV--HNSKPI 64 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~---~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~--~~g~~i 64 (222)
+..|+.++|+.|+...-.+.. ..-.+....++... ...+...... ..+|+++ .+|..+
T Consensus 22 li~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~-~~~~~~~~~v-~~~Pt~~~~~~g~~~ 84 (98)
T PTZ00051 22 IVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDE-LSEVAEKENI-TSMPTFKVFKNGSVV 84 (98)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcc-hHHHHHHCCC-ceeeEEEEEeCCeEE
Confidence 567789999999977555543 22223444555433 2333333333 4699877 456443
No 193
>PRK10996 thioredoxin 2; Provisional
Probab=56.31 E-value=67 Score=22.47 Aligned_cols=58 Identities=9% Similarity=0.128 Sum_probs=34.7
Q ss_pred eEEEeecCChHHHHHHHHHHH----cCCCceEEeCCCCCCchhhhhhCCCCCcccEEE--eCCeee
Q 038634 5 VKLYGTWSSPFSRRIELALKL----KGVPFEYIEEDLSNKSPELLKYNPVHKKIPVLV--HNSKPI 64 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~----~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~--~~g~~i 64 (222)
+..|+.++|+.|+...-.+.. .+-.+....+|....+.-....+- ..+|++. .+|..+
T Consensus 56 vv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V--~~~Ptlii~~~G~~v 119 (139)
T PRK10996 56 VIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRI--RSIPTIMIFKNGQVV 119 (139)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCC--CccCEEEEEECCEEE
Confidence 567788999999976544432 233455556665443333334444 4699987 567654
No 194
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=56.04 E-value=99 Score=24.34 Aligned_cols=67 Identities=16% Similarity=0.115 Sum_probs=41.3
Q ss_pred ehHHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHhhhhhhhHhHHhhccchhhHHHHHHHHHHHHHHHHHhc
Q 038634 66 ESQVILEYIDEIWNNNPILPQDPYQRAMARFWGKFIDEKALATRMKANFAEGKERELVTEEFFQQMKFLENEL 138 (222)
Q Consensus 66 es~~I~~yL~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~le~~L 138 (222)
|-..|-..+.+...- ..-|+|+...+.+...+.-.-...+...-..+ ..+.+++++..-+..||..|
T Consensus 5 E~qLI~~lf~RL~~a-e~~prD~eAe~lI~~~~~~qP~A~Y~laQ~vl-----vQE~AL~~a~~ri~eLe~ql 71 (247)
T PF09849_consen 5 ERQLIDDLFSRLKQA-EAQPRDPEAEALIAQALARQPDAPYYLAQTVL-----VQEQALKQAQARIQELEAQL 71 (247)
T ss_pred HHHHHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHhCCchHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 345566666665432 23389998888877766654443333222222 35667788888888888887
No 195
>PHA02278 thioredoxin-like protein
Probab=54.03 E-value=62 Score=21.42 Aligned_cols=59 Identities=7% Similarity=0.147 Sum_probs=31.7
Q ss_pred eEEEeecCChHHHHHHHHHHHc----CCCceEEeCCCCCC---chhhh-hhCCCCCcccEEE--eCCeeee
Q 038634 5 VKLYGTWSSPFSRRIELALKLK----GVPFEYIEEDLSNK---SPELL-KYNPVHKKIPVLV--HNSKPIA 65 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~----gi~~~~~~v~~~~~---~~~~~-~~~p~~g~vP~L~--~~g~~i~ 65 (222)
+.-|+.++|+-|+.+.=.+... +.......++.+.. .+++. ..+. ..+|++. .+|+.+.
T Consensus 18 vV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I--~~iPT~i~fk~G~~v~ 86 (103)
T PHA02278 18 IVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDI--MSTPVLIGYKDGQLVK 86 (103)
T ss_pred EEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCC--ccccEEEEEECCEEEE
Confidence 4556788999998665444322 22223344444322 13333 3344 4699987 5776553
No 196
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=53.84 E-value=54 Score=20.69 Aligned_cols=56 Identities=16% Similarity=0.166 Sum_probs=31.7
Q ss_pred eEEEeecCChHHHHHHHHHHH----cCCCceEEeCCCCCCchhhhhhCCCCCcccEEE--eCCe
Q 038634 5 VKLYGTWSSPFSRRIELALKL----KGVPFEYIEEDLSNKSPELLKYNPVHKKIPVLV--HNSK 62 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~----~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~--~~g~ 62 (222)
+..++.++|+.|+...-.+.. .+-.+....++......-....+- ..+|++. .+|.
T Consensus 18 vi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v--~~~P~~~~~~~g~ 79 (101)
T TIGR01068 18 LVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGI--RSIPTLLLFKNGK 79 (101)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCC--CcCCEEEEEeCCc
Confidence 556778889999877555432 222355555654432222333344 4699977 4554
No 197
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=53.77 E-value=52 Score=24.98 Aligned_cols=57 Identities=14% Similarity=0.232 Sum_probs=33.7
Q ss_pred eEEEee---cCChHHHHHHHHHHHc-----CCCceEEeCCCCCCchhhhhhCCCCCcccEEE--eCCee
Q 038634 5 VKLYGT---WSSPFSRRIELALKLK-----GVPFEYIEEDLSNKSPELLKYNPVHKKIPVLV--HNSKP 63 (222)
Q Consensus 5 ~~Ly~~---~~sp~~~~v~~~l~~~-----gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~--~~g~~ 63 (222)
+.+|.. ++||.|..+.=.+... ++.+..+.++.+. .++.....-- ..+|++. .+|..
T Consensus 23 i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~-~~~l~~~~~V-~~~Pt~~~f~~g~~ 89 (215)
T TIGR02187 23 IVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPE-DKEEAEKYGV-ERVPTTIILEEGKD 89 (215)
T ss_pred EEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcc-cHHHHHHcCC-CccCEEEEEeCCee
Confidence 567777 8999999777666544 3344445555333 3344333334 4799987 45543
No 198
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=53.39 E-value=63 Score=21.30 Aligned_cols=54 Identities=15% Similarity=0.239 Sum_probs=31.2
Q ss_pred ceEEEeecCChHHHHHHHHHH-----HcCCCceEEeCCCCCCchhhh-hhCCCCCcccEEE
Q 038634 4 EVKLYGTWSSPFSRRIELALK-----LKGVPFEYIEEDLSNKSPELL-KYNPVHKKIPVLV 58 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~l~-----~~gi~~~~~~v~~~~~~~~~~-~~~p~~g~vP~L~ 58 (222)
-+..|+.++||.|++..-.+. +.+..+....++.......+. ..... ..+|++.
T Consensus 24 vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v-~~~Pti~ 83 (109)
T cd02993 24 TLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQL-KSFPTIL 83 (109)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCC-CcCCEEE
Confidence 467788999999997654443 333345555555433222322 22334 5699886
No 199
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=53.06 E-value=83 Score=22.60 Aligned_cols=61 Identities=15% Similarity=0.259 Sum_probs=34.8
Q ss_pred eEEEeecCChHHHHHHHHHH-----HcCCCceEEeCCCCCCchhhhh-hCCCC----CcccEEE--eCCeeeee
Q 038634 5 VKLYGTWSSPFSRRIELALK-----LKGVPFEYIEEDLSNKSPELLK-YNPVH----KKIPVLV--HNSKPIAE 66 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~-----~~gi~~~~~~v~~~~~~~~~~~-~~p~~----g~vP~L~--~~g~~i~e 66 (222)
+..|+.++||.|+...-.++ +.+-.+....||.... ++..+ .+-.. +.+|++. .+|+.+..
T Consensus 51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~-~~la~~~~V~~~~~v~~~PT~ilf~~Gk~v~r 123 (152)
T cd02962 51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRF-PNVAEKFRVSTSPLSKQLPTIILFQGGKEVAR 123 (152)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCC-HHHHHHcCceecCCcCCCCEEEEEECCEEEEE
Confidence 66788899999997664443 2223355566665432 33332 23210 2389987 57766553
No 200
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=51.41 E-value=16 Score=25.09 Aligned_cols=58 Identities=14% Similarity=0.126 Sum_probs=26.5
Q ss_pred ecCChHHHHHHHHH----HHcCCCceEEeCCCCC------Cchhhhh--hCCCCCcccEEE--eCCeeeeehH
Q 038634 10 TWSSPFSRRIELAL----KLKGVPFEYIEEDLSN------KSPELLK--YNPVHKKIPVLV--HNSKPIAESQ 68 (222)
Q Consensus 10 ~~~sp~~~~v~~~l----~~~gi~~~~~~v~~~~------~~~~~~~--~~p~~g~vP~L~--~~g~~i~es~ 68 (222)
.++||.|.++.-.+ ....-....+.+...+ ....|+. .--. ..||+|. .++..+.|..
T Consensus 35 ~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~~p~~~l-~~IPTLi~~~~~~rL~e~e 106 (119)
T PF06110_consen 35 QSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRTDPDLKL-KGIPTLIRWETGERLVEEE 106 (119)
T ss_dssp -BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH--CC----SSSEEEECTSS-EEEHHH
T ss_pred CcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceEcceeee-eecceEEEECCCCccchhh
Confidence 56899999776444 3332233434343332 2223433 1112 3599998 3455565544
No 201
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=50.49 E-value=68 Score=20.85 Aligned_cols=57 Identities=12% Similarity=0.010 Sum_probs=31.0
Q ss_pred eEEEeecCChHHHHHHHHHHH-----cCCCceEEeCCCCCCchhhhhhCCCCCcccEEE--eCCeee
Q 038634 5 VKLYGTWSSPFSRRIELALKL-----KGVPFEYIEEDLSNKSPELLKYNPVHKKIPVLV--HNSKPI 64 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~-----~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~--~~g~~i 64 (222)
+..|+.++|+.|+...-.+.. .+-.+....++.+ .++.....-- ..+|++. .+|..+
T Consensus 21 vv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d--~~~~~~~~~v-~~~Pt~~~~~~g~~~ 84 (102)
T cd02948 21 VVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD--TIDTLKRYRG-KCEPTFLFYKNGELV 84 (102)
T ss_pred EEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC--CHHHHHHcCC-CcCcEEEEEECCEEE
Confidence 567788999999976544432 2112333444443 2333333333 4689876 466543
No 202
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=50.45 E-value=52 Score=21.91 Aligned_cols=59 Identities=17% Similarity=0.240 Sum_probs=34.3
Q ss_pred eEEEeecCChHHHHHHHHHHH-----cCCCceEEeCCCCCCchhhhhhCCCCCcccEEE--eCCeeeeehH
Q 038634 5 VKLYGTWSSPFSRRIELALKL-----KGVPFEYIEEDLSNKSPELLKYNPVHKKIPVLV--HNSKPIAESQ 68 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~-----~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~--~~g~~i~es~ 68 (222)
+..|+.++|+.|+.+.-.++. .++. ...+|.... ++.+.... ..+|++. .+|..+....
T Consensus 28 vv~F~a~~c~~C~~l~~~l~~la~~~~~v~--f~~vd~~~~--~l~~~~~i-~~~Pt~~~f~~G~~v~~~~ 93 (113)
T cd02957 28 VVHFYEPGFPRCKILDSHLEELAAKYPETK--FVKINAEKA--FLVNYLDI-KVLPTLLVYKNGELIDNIV 93 (113)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCcE--EEEEEchhh--HHHHhcCC-CcCCEEEEEECCEEEEEEe
Confidence 456788999988866655532 3333 344554332 43333333 4799987 5776665443
No 203
>TIGR02681 phage_pRha phage regulatory protein, rha family. Members of this protein family are found in temperate phage and bacterial prophage regions. Members include the product of the rha gene of the lambdoid phage phi-80, a late operon gene. The presence of this gene interferes with infection of bacterial strains that lack integration host factor (IHF), which regulates the rha gene. It is suggested that pRha is a phage regulatory protein.
Probab=49.64 E-value=21 Score=24.08 Aligned_cols=26 Identities=8% Similarity=0.276 Sum_probs=21.2
Q ss_pred ccEEE-eCCeeeeehHHHHHHHHhhcC
Q 038634 54 IPVLV-HNSKPIAESQVILEYIDEIWN 79 (222)
Q Consensus 54 vP~L~-~~g~~i~es~~I~~yL~~~~~ 79 (222)
+|.+. .+|.++++|..|++++++.+.
T Consensus 2 ~~~v~~~~~~~~ttS~~IAe~fgK~H~ 28 (108)
T TIGR02681 2 FPKVFTKRNQVVTDSLTMAQMFGKRHD 28 (108)
T ss_pred CceEEEECCEEEEeHHHHHHHHCcchH
Confidence 35544 789999999999999988765
No 204
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=48.25 E-value=69 Score=20.26 Aligned_cols=57 Identities=18% Similarity=0.195 Sum_probs=33.6
Q ss_pred eEEEeecCChHHHHHHHHHHHc----CCCceEEeCCCCCCchhhhhhCCCCCcccEEE--eCCee
Q 038634 5 VKLYGTWSSPFSRRIELALKLK----GVPFEYIEEDLSNKSPELLKYNPVHKKIPVLV--HNSKP 63 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~----gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~--~~g~~ 63 (222)
+..++.++|+.|+...-.+... +-.+....++... .+++...-.. ..+|+++ .+|..
T Consensus 16 lv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~-~~~l~~~~~i-~~~Pt~~~~~~g~~ 78 (96)
T cd02956 16 VVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDA-QPQIAQQFGV-QALPTVYLFAAGQP 78 (96)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccC-CHHHHHHcCC-CCCCEEEEEeCCEE
Confidence 5667888999999765555432 1134555666543 3344333333 4699987 56654
No 205
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=47.20 E-value=34 Score=25.85 Aligned_cols=35 Identities=23% Similarity=0.227 Sum_probs=24.5
Q ss_pred cceEEEeecCChHHH----HHHHHHHHcCCCceEEeCCC
Q 038634 3 EEVKLYGTWSSPFSR----RIELALKLKGVPFEYIEEDL 37 (222)
Q Consensus 3 ~~~~Ly~~~~sp~~~----~v~~~l~~~gi~~~~~~v~~ 37 (222)
|++.+|+-..||||. ++.-++...+++++.+.+.+
T Consensus 1 ~~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~~L 39 (209)
T cd03021 1 PKIELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPVFL 39 (209)
T ss_pred CceEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEeeeh
Confidence 478999999999988 34445555666666556543
No 206
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=46.17 E-value=1.2e+02 Score=22.33 Aligned_cols=61 Identities=11% Similarity=0.017 Sum_probs=34.1
Q ss_pred eEEEeecCChHHHHHHHHH---HHcCCCceEEeCCCCCCchhhhhhCCCCCcccEEE--eCCeeeeehH
Q 038634 5 VKLYGTWSSPFSRRIELAL---KLKGVPFEYIEEDLSNKSPELLKYNPVHKKIPVLV--HNSKPIAESQ 68 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l---~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~--~~g~~i~es~ 68 (222)
+..|+.++|+.|..+--.| +..--.+....|+.... +.....+. ..+|++. .+|..+..-.
T Consensus 87 VV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~--~l~~~f~v-~~vPTlllyk~G~~v~~~v 152 (175)
T cd02987 87 VVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT--GASDEFDT-DALPALLVYKGGELIGNFV 152 (175)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch--hhHHhCCC-CCCCEEEEEECCEEEEEEe
Confidence 4456778999888554333 22212344455554332 44444555 5799987 4787665443
No 207
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=44.53 E-value=37 Score=24.86 Aligned_cols=35 Identities=11% Similarity=0.151 Sum_probs=25.6
Q ss_pred ceEEEeecCChHHHH----HHHHHHHc-CCCceEEeCCCC
Q 038634 4 EVKLYGTWSSPFSRR----IELALKLK-GVPFEYIEEDLS 38 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~----v~~~l~~~-gi~~~~~~v~~~ 38 (222)
++++|+...||||.. ++-+.+.. ++.++...+.+.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~ 40 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLR 40 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSS
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccccc
Confidence 378999999999984 44444555 788888777654
No 208
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=44.38 E-value=1e+02 Score=26.88 Aligned_cols=73 Identities=16% Similarity=0.225 Sum_probs=47.5
Q ss_pred eEEEeecCChHHHH-------HHHHHHHcCCCceEEeCCCCCCchhhhhhCCCCCcccEEE--eCCee------eeehHH
Q 038634 5 VKLYGTWSSPFSRR-------IELALKLKGVPFEYIEEDLSNKSPELLKYNPVHKKIPVLV--HNSKP------IAESQV 69 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~-------v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~--~~g~~------i~es~~ 69 (222)
+.-||.|||+.|.+ +.-.|.+.|=+.....||-... .++-...-. .-.|+|. .||.. ..+...
T Consensus 46 lVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~-~~~~~~y~v-~gyPTlkiFrnG~~~~~Y~G~r~adg 123 (493)
T KOG0190|consen 46 LVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE-SDLASKYEV-RGYPTLKIFRNGRSAQDYNGPREADG 123 (493)
T ss_pred EEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh-hhhHhhhcC-CCCCeEEEEecCCcceeccCcccHHH
Confidence 56788999998873 4445556666788888876543 222222222 3479987 35643 456678
Q ss_pred HHHHHHhhcC
Q 038634 70 ILEYIDEIWN 79 (222)
Q Consensus 70 I~~yL~~~~~ 79 (222)
|+.||-++.+
T Consensus 124 Iv~wl~kq~g 133 (493)
T KOG0190|consen 124 IVKWLKKQSG 133 (493)
T ss_pred HHHHHHhccC
Confidence 9999999875
No 209
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=43.85 E-value=84 Score=19.99 Aligned_cols=56 Identities=9% Similarity=0.131 Sum_probs=31.5
Q ss_pred eEEEeecCChHHHHHHHHH-----HHcC--CCceEEeCCCCCCchhhhhhCCCCCcccEEE--eCCe
Q 038634 5 VKLYGTWSSPFSRRIELAL-----KLKG--VPFEYIEEDLSNKSPELLKYNPVHKKIPVLV--HNSK 62 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l-----~~~g--i~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~--~~g~ 62 (222)
+..|+.++|+.|+...-.+ ...+ -.+....++......-....+. ..+|++. .+|.
T Consensus 20 lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v--~~~Pt~~~~~~g~ 84 (102)
T cd03005 20 FVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQV--RGYPTLLLFKDGE 84 (102)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCC--CcCCEEEEEeCCC
Confidence 5667888999998654333 3333 2455556665433322233444 4699876 4554
No 210
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=43.15 E-value=1.5e+02 Score=22.83 Aligned_cols=72 Identities=15% Similarity=0.168 Sum_probs=41.9
Q ss_pred eEEEeecCChHHHHHHHHHHH-----cCCCceEEeCCCCCCchhhhhhCCCCCcccEEE--eCCeee------eehHHHH
Q 038634 5 VKLYGTWSSPFSRRIELALKL-----KGVPFEYIEEDLSNKSPELLKYNPVHKKIPVLV--HNSKPI------AESQVIL 71 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~-----~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~--~~g~~i------~es~~I~ 71 (222)
+..|+.++|+.|+...-.+.. .| .+....+|... .+++.....- ..+|++. .+|..+ .....|.
T Consensus 56 lV~FyApWC~~Ck~~~P~~e~la~~~~~-~v~~~~VD~~~-~~~l~~~~~I-~~~PTl~~f~~G~~v~~~~G~~s~e~L~ 132 (224)
T PTZ00443 56 FVKFYAPWCSHCRKMAPAWERLAKALKG-QVNVADLDATR-ALNLAKRFAI-KGYPTLLLFDKGKMYQYEGGDRSTEKLA 132 (224)
T ss_pred EEEEECCCChHHHHHHHHHHHHHHHcCC-CeEEEEecCcc-cHHHHHHcCC-CcCCEEEEEECCEEEEeeCCCCCHHHHH
Confidence 567888999999866544432 22 24444555433 3344333333 4699987 566543 2345677
Q ss_pred HHHHhhcC
Q 038634 72 EYIDEIWN 79 (222)
Q Consensus 72 ~yL~~~~~ 79 (222)
+|+.+.+.
T Consensus 133 ~fi~~~~~ 140 (224)
T PTZ00443 133 AFALGDFK 140 (224)
T ss_pred HHHHHHHH
Confidence 77777664
No 211
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=42.65 E-value=89 Score=19.92 Aligned_cols=57 Identities=12% Similarity=0.061 Sum_probs=30.1
Q ss_pred eEEEeecCChHHHHHHHHH----HHcC--CCceEEeCCCCC-CchhhhhhCCCCCcccEEE--eCCe
Q 038634 5 VKLYGTWSSPFSRRIELAL----KLKG--VPFEYIEEDLSN-KSPELLKYNPVHKKIPVLV--HNSK 62 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l----~~~g--i~~~~~~v~~~~-~~~~~~~~~p~~g~vP~L~--~~g~ 62 (222)
+.+|+.++|+.|+...-.+ .... -.+....++... ..+.+...... ..+|+++ .+|.
T Consensus 21 ~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i-~~~Pt~~~~~~g~ 86 (104)
T cd02997 21 LVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNV-KGFPTFKYFENGK 86 (104)
T ss_pred EEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCC-ccccEEEEEeCCC
Confidence 5678889999999764222 2211 223444444432 13344333333 3699887 3554
No 212
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=42.61 E-value=90 Score=19.97 Aligned_cols=52 Identities=12% Similarity=0.140 Sum_probs=30.4
Q ss_pred eEEEeecCChHHHHHHHHHHH-----cCCCceEEeCCCCCCchhhhhhCCCCCcccEEE
Q 038634 5 VKLYGTWSSPFSRRIELALKL-----KGVPFEYIEEDLSNKSPELLKYNPVHKKIPVLV 58 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~-----~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~ 58 (222)
+..|+.++|+.|+...-.+.. .+..+....+|... .+.+...... ..+|++.
T Consensus 20 lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~-~~~~~~~~~i-~~~Pt~~ 76 (101)
T cd02994 20 MIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQ-EPGLSGRFFV-TALPTIY 76 (101)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccC-CHhHHHHcCC-cccCEEE
Confidence 567888999999865544432 23345555565443 3333333333 4699987
No 213
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=42.41 E-value=67 Score=20.73 Aligned_cols=52 Identities=8% Similarity=-0.047 Sum_probs=29.7
Q ss_pred eEEEeecCChHHHHHHHHHHHc----CCCceEEeCCCCCCchhhhhhCCCCCcccEEE
Q 038634 5 VKLYGTWSSPFSRRIELALKLK----GVPFEYIEEDLSNKSPELLKYNPVHKKIPVLV 58 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~----gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~ 58 (222)
+..|+.++|+.|++..=.+... +-.+....+|... .+++...... ..+|++.
T Consensus 23 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~-~~~~~~~~~i-~~~Pt~~ 78 (104)
T cd03004 23 LVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQK-YESLCQQANI-RAYPTIR 78 (104)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCc-hHHHHHHcCC-CcccEEE
Confidence 6678889999998765444322 2124444555443 3344333333 4699987
No 214
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=41.77 E-value=85 Score=20.50 Aligned_cols=56 Identities=13% Similarity=0.126 Sum_probs=32.1
Q ss_pred eEEEeecCChHHHHHHHHHHHc-----C-C----CceEEeCCCCCCchhhhhhCCCCCcccEEE--eCCe
Q 038634 5 VKLYGTWSSPFSRRIELALKLK-----G-V----PFEYIEEDLSNKSPELLKYNPVHKKIPVLV--HNSK 62 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~-----g-i----~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~--~~g~ 62 (222)
+..|+.++|+.|+...-.+... + . .+....+|.... .++...... ..+|++. .+|.
T Consensus 22 lv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~-~~l~~~~~v-~~~Ptl~~~~~g~ 89 (108)
T cd02996 22 LVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE-SDIADRYRI-NKYPTLKLFRNGM 89 (108)
T ss_pred EEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC-HHHHHhCCC-CcCCEEEEEeCCc
Confidence 5678899999999776555321 1 1 244445554433 343333333 4799987 4554
No 215
>PRK09266 hypothetical protein; Provisional
Probab=41.02 E-value=50 Score=26.00 Aligned_cols=57 Identities=16% Similarity=0.243 Sum_probs=39.6
Q ss_pred HHHHcCCCceEEeCCCCC---CchhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHhhcC
Q 038634 22 ALKLKGVPFEYIEEDLSN---KSPELLKYNPVHKKIPVLVHNSKPIAESQVILEYIDEIWN 79 (222)
Q Consensus 22 ~l~~~gi~~~~~~v~~~~---~~~~~~~~~p~~g~vP~L~~~g~~i~es~~I~~yL~~~~~ 79 (222)
.+...|++++...++..+ -.+-|. .|...|-+||-..++..+.+...|.+.|.+.|-
T Consensus 200 ~~~~~g~~v~e~~i~~~eL~~adevfl-tnSl~gi~pV~~i~~~~~~~~~~~~~~l~~~~~ 259 (266)
T PRK09266 200 GLERLGIPQRTRPVTLADLGRFAGAFA-CNAWRGQRAVSAIDDVALPDSHALLELLRRAYE 259 (266)
T ss_pred HHHHcCCeeEEEECCHHHHHHhhHhhh-hcCccceEEEEEECCEECCCCchHHHHHHHHHH
Confidence 455679999998887643 233344 444448899999888777655678887777663
No 216
>PF12290 DUF3802: Protein of unknown function (DUF3802); InterPro: IPR020979 This family of proteins is found in bacteria and are typically between 114 and 143 amino acids in length. There is a conserved KNLFD sequence motif. The annotation with this family suggests that it may be the B subunit of bacterial type IIA DNA topoisomerase but there is no evidence to support this annotation.
Probab=40.70 E-value=44 Score=22.63 Aligned_cols=85 Identities=15% Similarity=0.081 Sum_probs=44.9
Q ss_pred HHHHHHHHhhcCCCCCCCCCHHHHHHHHHHHHHhhhhhhhHhHHhhcc----chhhHHHHHHHHHHHHHHHHHhcCCCCc
Q 038634 68 QVILEYIDEIWNNNPILPQDPYQRAMARFWGKFIDEKALATRMKANFA----EGKERELVTEEFFQQMKFLENELNGKDF 143 (222)
Q Consensus 68 ~~I~~yL~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~le~~L~~~~~ 143 (222)
.+.++||....+ ++-...........+.+.+.+.+...+...+-- ....+..........+..|++.|++
T Consensus 9 ~~LI~yLte~L~---lFe~~~~~~~~~~Tv~d~vee~ia~~im~vc~Qnp~L~~~~R~~iirE~Daiv~DLeEVLa~--- 82 (113)
T PF12290_consen 9 DALIEYLTENLS---LFESSQSGDTGDETVEDVVEEQIASQIMAVCEQNPELEFSQRFQIIREADAIVYDLEEVLAS--- 82 (113)
T ss_pred HHHHHHHHHhHH---HhcCCCCCCcccchHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 467889988765 433111111122233444444444444444432 2334455566777788888888875
Q ss_pred ccCCCCChhHHHHHH
Q 038634 144 FGGETIGFVDIVAIV 158 (222)
Q Consensus 144 l~G~~~t~aD~~l~~ 158 (222)
..+.++|-.-+.+..
T Consensus 83 V~~~~aT~eQ~~Fi~ 97 (113)
T PF12290_consen 83 VWNQKATNEQIAFIE 97 (113)
T ss_pred HHcCCCCHHHHHHHH
Confidence 123456665555433
No 217
>PTZ00102 disulphide isomerase; Provisional
Probab=40.31 E-value=1.9e+02 Score=24.71 Aligned_cols=73 Identities=11% Similarity=0.170 Sum_probs=43.0
Q ss_pred eEEEeecCChHHHHHHHHH-------HHcCCCceEEeCCCCCCchhhhhhCCCCCcccEEE--eCCeee-----eehHHH
Q 038634 5 VKLYGTWSSPFSRRIELAL-------KLKGVPFEYIEEDLSNKSPELLKYNPVHKKIPVLV--HNSKPI-----AESQVI 70 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l-------~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~--~~g~~i-----~es~~I 70 (222)
+..|+.++|+.|++..=.+ +..+-++....+|......-..+.+- ..+|++. .+|..+ .....|
T Consensus 53 lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i--~~~Pt~~~~~~g~~~~y~g~~~~~~l 130 (477)
T PTZ00102 53 LVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGV--RGYPTIKFFNKGNPVNYSGGRTADGI 130 (477)
T ss_pred EEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCC--CcccEEEEEECCceEEecCCCCHHHH
Confidence 6778899999998664221 22234466666665433322233343 3599886 444321 345679
Q ss_pred HHHHHhhcC
Q 038634 71 LEYIDEIWN 79 (222)
Q Consensus 71 ~~yL~~~~~ 79 (222)
..|+.+..+
T Consensus 131 ~~~l~~~~~ 139 (477)
T PTZ00102 131 VSWIKKLTG 139 (477)
T ss_pred HHHHHHhhC
Confidence 999988754
No 218
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=39.29 E-value=1.1e+02 Score=20.20 Aligned_cols=68 Identities=10% Similarity=0.137 Sum_probs=39.0
Q ss_pred EEeecCChHHHHHHHHHHHcCCCceEEeCCCC-CCchh---hhhh---CCCCCcccEEEeCCe-eeeehHHHHHHHHh
Q 038634 7 LYGTWSSPFSRRIELALKLKGVPFEYIEEDLS-NKSPE---LLKY---NPVHKKIPVLVHNSK-PIAESQVILEYIDE 76 (222)
Q Consensus 7 Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~-~~~~~---~~~~---~p~~g~vP~L~~~g~-~i~es~~I~~yL~~ 76 (222)
|++-..||+|.+..-.+.-.+-.=....++.. ....+ ...+ +.. ..+-+ ..+|. +..++.|+..-+..
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~-~~~g~~~~~G~~A~~~l~~~ 76 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDRGGRLRFVDIQSEPDQALLASYGISPEDAD-SRLHL-IDDGERVYRGSDAVLRLLRR 76 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCCCCCEEEEECCChhhhhHHHhcCcCHHHHc-CeeEE-ecCCCEEEEcHHHHHHHHHH
Confidence 46778899999888777777653333333331 11111 1112 122 23333 55665 99999999887554
No 219
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=38.44 E-value=1.3e+02 Score=20.70 Aligned_cols=61 Identities=18% Similarity=0.190 Sum_probs=36.8
Q ss_pred eEEEeecCChHHHHHHH-------HHHHcCCCceEEeCCCCCCchhhhh--------hCCCCCcccEEE---eCCeeeee
Q 038634 5 VKLYGTWSSPFSRRIEL-------ALKLKGVPFEYIEEDLSNKSPELLK--------YNPVHKKIPVLV---HNSKPIAE 66 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~-------~l~~~gi~~~~~~v~~~~~~~~~~~--------~~p~~g~vP~L~---~~g~~i~e 66 (222)
+..++..+|++|++..- +.....-.|..+.+|.... ++... .+.. +-+|+++ .+|+.+..
T Consensus 19 ll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~-~~~~~~~~~~~~~~~~~-~G~Pt~vfl~~~G~~~~~ 96 (124)
T cd02955 19 FLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREER-PDVDKIYMNAAQAMTGQ-GGWPLNVFLTPDLKPFFG 96 (124)
T ss_pred EEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcC-cHHHHHHHHHHHHhcCC-CCCCEEEEECCCCCEEee
Confidence 44567889999997642 2223344688888886542 22211 1123 3589977 36788877
Q ss_pred h
Q 038634 67 S 67 (222)
Q Consensus 67 s 67 (222)
+
T Consensus 97 ~ 97 (124)
T cd02955 97 G 97 (124)
T ss_pred e
Confidence 6
No 220
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=37.86 E-value=1.3e+02 Score=20.48 Aligned_cols=58 Identities=16% Similarity=0.187 Sum_probs=33.3
Q ss_pred eEEEeecCChHHHHHHHHHHHcCCC----ceEEeCCCCCCchhhhhhCCCCCcccEEE--eCCeee
Q 038634 5 VKLYGTWSSPFSRRIELALKLKGVP----FEYIEEDLSNKSPELLKYNPVHKKIPVLV--HNSKPI 64 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~----~~~~~v~~~~~~~~~~~~~p~~g~vP~L~--~~g~~i 64 (222)
+.-|+.++||-|+.+.=.+...--. .....||.+. .+++....-. ..+|++. .+|+.+
T Consensus 18 VV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~-~~~la~~~~V-~~iPTf~~fk~G~~v 81 (114)
T cd02954 18 VIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDE-VPDFNKMYEL-YDPPTVMFFFRNKHM 81 (114)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCC-CHHHHHHcCC-CCCCEEEEEECCEEE
Confidence 3447888999998665555322211 3344556543 3444444343 4699987 577654
No 221
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=37.68 E-value=41 Score=22.09 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=14.3
Q ss_pred ceEEEeecCChHHHHHHHHHH
Q 038634 4 EVKLYGTWSSPFSRRIELALK 24 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~l~ 24 (222)
.+.+|+.++||+|++..-.+.
T Consensus 8 ~v~~F~~~~C~~C~~~~~~~~ 28 (112)
T PF13098_consen 8 IVVVFTDPWCPYCKKLEKELF 28 (112)
T ss_dssp EEEEEE-TT-HHHHHHHHHHH
T ss_pred EEEEEECCCCHHHHHHHHHHH
Confidence 467788999999998755554
No 222
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=37.57 E-value=1.2e+02 Score=19.78 Aligned_cols=54 Identities=19% Similarity=0.277 Sum_probs=30.5
Q ss_pred eEEEeecCChHHHHHHHHHH-----HcCCCceEEeCCCCCCchhhhhhCCCCCcccEEE--eCC
Q 038634 5 VKLYGTWSSPFSRRIELALK-----LKGVPFEYIEEDLSNKSPELLKYNPVHKKIPVLV--HNS 61 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~-----~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~--~~g 61 (222)
+..|+.++|+.|+...=.+. +.++. ...++..+..+.+...... ..+|++. ++|
T Consensus 22 lV~F~a~WC~~C~~~~p~l~~la~~~~~~~--~~~vd~~~~~~~l~~~~~V-~~~PT~~lf~~g 82 (100)
T cd02999 22 AVLFYASWCPFSASFRPHFNALSSMFPQIR--HLAIEESSIKPSLLSRYGV-VGFPTILLFNST 82 (100)
T ss_pred EEEEECCCCHHHHhHhHHHHHHHHHhccCc--eEEEECCCCCHHHHHhcCC-eecCEEEEEcCC
Confidence 56678889999987764443 34433 3344543223333333333 4699876 445
No 223
>PF13728 TraF: F plasmid transfer operon protein
Probab=37.20 E-value=1.3e+02 Score=22.99 Aligned_cols=53 Identities=13% Similarity=0.140 Sum_probs=34.5
Q ss_pred ceEEEeecCChHHH----HHHHHHHHcCCCceEEeCCCC------C--C-chhhhhhCCCCCcccEEE
Q 038634 4 EVKLYGTWSSPFSR----RIELALKLKGVPFEYIEEDLS------N--K-SPELLKYNPVHKKIPVLV 58 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~----~v~~~l~~~gi~~~~~~v~~~------~--~-~~~~~~~~p~~g~vP~L~ 58 (222)
.+.+++.+.||+|+ .++.+....|+++..+.+|-. + . +.-...++. ..+|+|.
T Consensus 123 gL~~F~~~~C~~C~~~~pil~~~~~~yg~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v--~~~Pal~ 188 (215)
T PF13728_consen 123 GLFFFYRSDCPYCQQQAPILQQFADKYGFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGV--KVTPALF 188 (215)
T ss_pred EEEEEEcCCCchhHHHHHHHHHHHHHhCCEEEEEecCCCCCcCCCCCCCCHHHHHHcCC--CcCCEEE
Confidence 36778889999998 455666678888887777621 0 1 222334455 4789976
No 224
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=37.12 E-value=1.2e+02 Score=19.76 Aligned_cols=59 Identities=14% Similarity=0.127 Sum_probs=31.3
Q ss_pred eEEEeecCChHHHHHHHHHHHcC---CCceEEeCCCCCCc--hhhhhhCCCCCcccEEE--eCCeee
Q 038634 5 VKLYGTWSSPFSRRIELALKLKG---VPFEYIEEDLSNKS--PELLKYNPVHKKIPVLV--HNSKPI 64 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~g---i~~~~~~v~~~~~~--~~~~~~~p~~g~vP~L~--~~g~~i 64 (222)
+..|+.++|+-|+...=.+.... -.+....++.+... .++.....- ..+|+++ .+|..+
T Consensus 19 vv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V-~~~Pt~~~~~~G~~v 84 (103)
T cd02985 19 VLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKI-IEVPHFLFYKDGEKI 84 (103)
T ss_pred EEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCC-CcCCEEEEEeCCeEE
Confidence 45567789998886554443211 12344455543321 244433333 4699876 466544
No 225
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=37.03 E-value=67 Score=21.70 Aligned_cols=51 Identities=8% Similarity=-0.042 Sum_probs=30.5
Q ss_pred eEEEeecCChHHHHHHHHHHHcCCC----ceEEeCCCCCCchhhh--hhCCCCCcccEEE
Q 038634 5 VKLYGTWSSPFSRRIELALKLKGVP----FEYIEEDLSNKSPELL--KYNPVHKKIPVLV 58 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~----~~~~~v~~~~~~~~~~--~~~p~~g~vP~L~ 58 (222)
+..|+.++|+.|+...-.+.+..-. .....||.+. ..... ..+- ..+|++.
T Consensus 33 lV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~-~~~l~~~~~~I--~~~PTl~ 89 (113)
T cd03006 33 LVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWW-PQGKCRKQKHF--FYFPVIH 89 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCC-ChHHHHHhcCC--cccCEEE
Confidence 5678899999999776666543322 4445566443 33332 2333 4689987
No 226
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=36.80 E-value=1e+02 Score=18.87 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=20.8
Q ss_pred cccEEEeCCeeeeehHHHHHHHHhhc
Q 038634 53 KIPVLVHNSKPIAESQVILEYIDEIW 78 (222)
Q Consensus 53 ~vP~L~~~g~~i~es~~I~~yL~~~~ 78 (222)
+=||+...| ..+|-.+|.+||.+..
T Consensus 15 ~dPVi~~~G-~tyer~~I~~~l~~~~ 39 (73)
T PF04564_consen 15 RDPVILPSG-HTYERSAIERWLEQNG 39 (73)
T ss_dssp SSEEEETTS-EEEEHHHHHHHHCTTS
T ss_pred hCceeCCcC-CEEcHHHHHHHHHcCC
Confidence 468888788 7799999999999933
No 227
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=35.63 E-value=67 Score=17.15 Aligned_cols=24 Identities=13% Similarity=0.213 Sum_probs=19.9
Q ss_pred CcccEEEeCCeeeeehHHHHHHHH
Q 038634 52 KKIPVLVHNSKPIAESQVILEYID 75 (222)
Q Consensus 52 g~vP~L~~~g~~i~es~~I~~yL~ 75 (222)
|.+|....++..+.....|.+|++
T Consensus 25 g~i~~~~~g~~~~~~~~~l~~~~~ 48 (49)
T TIGR01764 25 GELPAYRVGRHYRIPREDVDEYLE 48 (49)
T ss_pred CCCCeEEeCCeEEEeHHHHHHHHh
Confidence 678887778888899999988875
No 228
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=35.38 E-value=1.6e+02 Score=20.69 Aligned_cols=59 Identities=12% Similarity=0.097 Sum_probs=30.6
Q ss_pred eEEEeecCChHHHHHHHHHHH----cCCCceEEeCCCCC-CchhhhhhCCCCCcccEEE--e-CCeee
Q 038634 5 VKLYGTWSSPFSRRIELALKL----KGVPFEYIEEDLSN-KSPELLKYNPVHKKIPVLV--H-NSKPI 64 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~----~gi~~~~~~v~~~~-~~~~~~~~~p~~g~vP~L~--~-~g~~i 64 (222)
+..|+.++|+.|+...=.+.. .+-.+..+.++... ....+...... ..+|+++ + +|.++
T Consensus 24 vV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V-~~iPt~v~~~~~G~~v 90 (142)
T cd02950 24 LVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRV-DGIPHFVFLDREGNEE 90 (142)
T ss_pred EEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCC-CCCCEEEEECCCCCEE
Confidence 556778899999866655432 12123344444332 11233332333 4699876 3 56554
No 229
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=34.70 E-value=1.1e+02 Score=18.66 Aligned_cols=32 Identities=25% Similarity=0.188 Sum_probs=26.7
Q ss_pred eEEEeecCChHHHHHHHHHHHcCCCceEEeCC
Q 038634 5 VKLYGTWSSPFSRRIELALKLKGVPFEYIEED 36 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~ 36 (222)
.-+..++....+.++.-+|+..|++++.++++
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~~~liP~P 34 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIPVRLIPTP 34 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCcEEEeCCC
Confidence 34556777778999999999999999988775
No 230
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=33.84 E-value=92 Score=21.12 Aligned_cols=60 Identities=15% Similarity=0.086 Sum_probs=35.4
Q ss_pred eEEEeecC--ChHHHHHHHHHHHcCCCc----eEEeCCCCCCchhhhhhCCCCCcccEEE--eCCeeeee
Q 038634 5 VKLYGTWS--SPFSRRIELALKLKGVPF----EYIEEDLSNKSPELLKYNPVHKKIPVLV--HNSKPIAE 66 (222)
Q Consensus 5 ~~Ly~~~~--sp~~~~v~~~l~~~gi~~----~~~~v~~~~~~~~~~~~~p~~g~vP~L~--~~g~~i~e 66 (222)
+..|+..+ ||-|..+.-.+...--.| ....++..+. ++.....-- ..+|+|. .+|+.+..
T Consensus 31 v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~-~~la~~f~V-~sIPTli~fkdGk~v~~ 98 (111)
T cd02965 31 VLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADE-QALAARFGV-LRTPALLFFRDGRYVGV 98 (111)
T ss_pred EEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCC-HHHHHHcCC-CcCCEEEEEECCEEEEE
Confidence 45566664 999997776665433333 3335555443 344444344 4699988 57876654
No 231
>PF12062 HSNSD: heparan sulfate-N-deacetylase; InterPro: IPR021930 This family of proteins is are heparan sulphate N-deacetylase enzymes. This protein is found in eukaryotes. This enzyme is often found associated with PF00685 from PFAM. ; GO: 0015016 [heparan sulfate]-glucosamine N-sulfotransferase activity, 0016787 hydrolase activity
Probab=33.72 E-value=98 Score=26.80 Aligned_cols=51 Identities=18% Similarity=0.141 Sum_probs=38.8
Q ss_pred eEEEeecCChHHHHHHHHHHHcCCCceEEeCCCCCCchhhhhhCCCCCcccEEEeCC-----eeeeehH
Q 038634 5 VKLYGTWSSPFSRRIELALKLKGVPFEYIEEDLSNKSPELLKYNPVHKKIPVLVHNS-----KPIAESQ 68 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g-----~~i~es~ 68 (222)
++++-.-.|..++.+..+|+...++|++..++- . |.+|+|.+++ .+|.|..
T Consensus 63 LVFvES~YS~lGq~Iv~ILes~Rf~y~~ei~~~------------k-g~lP~LT~~~kGRy~lII~ENl 118 (487)
T PF12062_consen 63 LVFVESQYSQLGQDIVAILESNRFKYKVEIASG------------K-GDLPVLTDNDKGRYSLIIFENL 118 (487)
T ss_pred EEEEeeccchhhHHHHHHHHhceeeEEEEEccC------------C-CCCCccccCCCCcEEEEEehhH
Confidence 344556678999999999999999999887741 2 5789998653 5677653
No 232
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=33.37 E-value=65 Score=20.20 Aligned_cols=26 Identities=19% Similarity=0.427 Sum_probs=22.0
Q ss_pred CChHHHHHHHHHHHcCCCceEEeCCC
Q 038634 12 SSPFSRRIELALKLKGVPFEYIEEDL 37 (222)
Q Consensus 12 ~sp~~~~v~~~l~~~gi~~~~~~v~~ 37 (222)
--+|++|+.-.|+..|++|+..+...
T Consensus 14 evGF~rk~L~I~E~~~is~Eh~PSGI 39 (76)
T cd04911 14 EVGFGRKLLSILEDNGISYEHMPSGI 39 (76)
T ss_pred hhcHHHHHHHHHHHcCCCEeeecCCC
Confidence 34789999999999999999887643
No 233
>PF09413 DUF2007: Domain of unknown function (DUF2007); InterPro: IPR018551 This is a family of proteins with unknown function. ; PDB: 2HFV_A.
Probab=33.24 E-value=60 Score=19.29 Aligned_cols=31 Identities=26% Similarity=0.215 Sum_probs=19.8
Q ss_pred EEEeecCChHHHHHHHHHHHcCCCceEEeCC
Q 038634 6 KLYGTWSSPFSRRIELALKLKGVPFEYIEED 36 (222)
Q Consensus 6 ~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~v~ 36 (222)
+||+.....-++.++-+|+..||++....-.
T Consensus 2 ~l~~~~~~~ea~~i~~~L~~~gI~~~v~~~~ 32 (67)
T PF09413_consen 2 KLYTAGDPIEAELIKGLLEENGIPAFVKNEH 32 (67)
T ss_dssp EEEEE--HHHHHHHHHHHHHTT--EE--S--
T ss_pred EEEEcCCHHHHHHHHHHHHhCCCcEEEECCc
Confidence 6777776666999999999999998876544
No 234
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=32.90 E-value=26 Score=24.42 Aligned_cols=53 Identities=13% Similarity=0.086 Sum_probs=25.5
Q ss_pred ceEEEeecCChHHHHHH----HHHHHc-CCCceEEeCCCC-CCchhhhhhCCCCCcccEEE
Q 038634 4 EVKLYGTWSSPFSRRIE----LALKLK-GVPFEYIEEDLS-NKSPELLKYNPVHKKIPVLV 58 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~----~~l~~~-gi~~~~~~v~~~-~~~~~~~~~~p~~g~vP~L~ 58 (222)
.+.+++-++||.|.+.. -+++.. +|++.....|-. +....++. +.. ..+|+++
T Consensus 44 ~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt-~g~-~~IP~~I 102 (129)
T PF14595_consen 44 NILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLT-NGG-RSIPTFI 102 (129)
T ss_dssp EEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT--SS---SSEEE
T ss_pred EEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHh-CCC-eecCEEE
Confidence 36677888999988433 333444 566666554311 11233444 444 6899998
No 235
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=31.93 E-value=62 Score=24.08 Aligned_cols=22 Identities=27% Similarity=0.458 Sum_probs=18.5
Q ss_pred ceEEEeecCChHHHHHHHHHHH
Q 038634 4 EVKLYGTWSSPFSRRIELALKL 25 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~l~~ 25 (222)
.+.+|+.+.||||++..-.+..
T Consensus 80 ~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 80 VVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred EEEEEECCCCccHHHHHHHHhh
Confidence 4778889999999999887764
No 236
>PF15608 PELOTA_1: PELOTA RNA binding domain
Probab=31.45 E-value=93 Score=20.70 Aligned_cols=31 Identities=26% Similarity=0.146 Sum_probs=24.3
Q ss_pred ceEEEeecCChHHHHHHHHHHHcCCCceEEe
Q 038634 4 EVKLYGTWSSPFSRRIELALKLKGVPFEYIE 34 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~~ 34 (222)
...|...+..|...-++.+.+++|+|++...
T Consensus 57 ~~vLVr~~~~pd~~Hl~~LA~ekgVpVe~~~ 87 (100)
T PF15608_consen 57 WKVLVRDPDDPDLAHLLLLAEEKGVPVEVYP 87 (100)
T ss_pred CEEEECCCCCccHHHHHHHHHHcCCcEEEeC
Confidence 3456666777888889999999999988754
No 237
>PF12728 HTH_17: Helix-turn-helix domain
Probab=31.39 E-value=98 Score=17.08 Aligned_cols=26 Identities=15% Similarity=0.116 Sum_probs=21.9
Q ss_pred CcccEEEeCCeeeeehHHHHHHHHhh
Q 038634 52 KKIPVLVHNSKPIAESQVILEYIDEI 77 (222)
Q Consensus 52 g~vP~L~~~g~~i~es~~I~~yL~~~ 77 (222)
|.+|....++.....-..|.+|+.++
T Consensus 25 g~i~~~~~g~~~~~~~~~l~~~~~~~ 50 (51)
T PF12728_consen 25 GKIPPFKIGRKWRIPKSDLDRWLERR 50 (51)
T ss_pred CCCCeEEeCCEEEEeHHHHHHHHHhC
Confidence 67888888888999999999998764
No 238
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=31.20 E-value=2.8e+02 Score=23.42 Aligned_cols=73 Identities=16% Similarity=0.236 Sum_probs=42.6
Q ss_pred eEEEeecCChHHHHHHHHHH-----H--cCCCceEEeCCCCCCchhhhhhCCCCCcccEEE--eCCee-------eeehH
Q 038634 5 VKLYGTWSSPFSRRIELALK-----L--KGVPFEYIEEDLSNKSPELLKYNPVHKKIPVLV--HNSKP-------IAESQ 68 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~-----~--~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~--~~g~~-------i~es~ 68 (222)
+.+|+.++|+.|.+..-.+. + .+-.+....++.... .++...... ..+|++. .+|.. -.+..
T Consensus 22 ~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~-~~l~~~~~i-~~~Pt~~~~~~g~~~~~~~~g~~~~~ 99 (462)
T TIGR01130 22 LVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEE-KDLAQKYGV-SGYPTLKIFRNGEDSVSDYNGPRDAD 99 (462)
T ss_pred EEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCc-HHHHHhCCC-ccccEEEEEeCCccceeEecCCCCHH
Confidence 67788899999997643222 2 232355556664432 333333333 4689876 34432 12456
Q ss_pred HHHHHHHhhcC
Q 038634 69 VILEYIDEIWN 79 (222)
Q Consensus 69 ~I~~yL~~~~~ 79 (222)
.|..|+.+..+
T Consensus 100 ~l~~~i~~~~~ 110 (462)
T TIGR01130 100 GIVKYMKKQSG 110 (462)
T ss_pred HHHHHHHHhcC
Confidence 78888888764
No 239
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=30.82 E-value=97 Score=23.97 Aligned_cols=22 Identities=5% Similarity=0.244 Sum_probs=18.0
Q ss_pred ceEEEeecCChHHHHHHHHHHH
Q 038634 4 EVKLYGTWSSPFSRRIELALKL 25 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~l~~ 25 (222)
.+.+|+-+.||||++..--+..
T Consensus 110 ~I~vFtDp~CpyCkkl~~~l~~ 131 (232)
T PRK10877 110 VITVFTDITCGYCHKLHEQMKD 131 (232)
T ss_pred EEEEEECCCChHHHHHHHHHHH
Confidence 4778999999999998766654
No 240
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=30.71 E-value=86 Score=24.26 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=16.6
Q ss_pred ceEEEeecCChHHH----HHHHHHHHcC
Q 038634 4 EVKLYGTWSSPFSR----RIELALKLKG 27 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~----~v~~~l~~~g 27 (222)
++.+|+-..||||. +..-++...+
T Consensus 7 ~I~v~sD~vCPwC~ig~~rL~ka~~~~~ 34 (225)
T COG2761 7 EIDVFSDVVCPWCYIGKRRLEKALAEYP 34 (225)
T ss_pred EEEEEeCCcCchhhcCHHHHHHHHHhcC
Confidence 47788889999998 4444444444
No 241
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=29.85 E-value=1.9e+02 Score=19.84 Aligned_cols=55 Identities=15% Similarity=0.168 Sum_probs=28.2
Q ss_pred cCChHHHHHHHHH----HHcCCCceEEeCCCCC------CchhhhhhCCCCC-cccEEE--eCCeeeee
Q 038634 11 WSSPFSRRIELAL----KLKGVPFEYIEEDLSN------KSPELLKYNPVHK-KIPVLV--HNSKPIAE 66 (222)
Q Consensus 11 ~~sp~~~~v~~~l----~~~gi~~~~~~v~~~~------~~~~~~~~~p~~g-~vP~L~--~~g~~i~e 66 (222)
++||.|+.+.-.+ ....-.+....|+..+ ...++....-. . .+|++. .+|..+.|
T Consensus 38 ~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I-~~~iPT~~~~~~~~~l~~ 105 (119)
T cd02952 38 SWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKL-TTGVPTLLRWKTPQRLVE 105 (119)
T ss_pred CCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCc-ccCCCEEEEEcCCceecc
Confidence 7899998654433 3332224445555432 22344332222 3 699987 34544444
No 242
>PRK13947 shikimate kinase; Provisional
Probab=28.18 E-value=85 Score=22.46 Aligned_cols=32 Identities=13% Similarity=-0.007 Sum_probs=27.8
Q ss_pred CCcceEEEeecCChHHHHHHHHHHHcCCCceEE
Q 038634 1 MAEEVKLYGTWSSPFSRRIELALKLKGVPFEYI 33 (222)
Q Consensus 1 M~~~~~Ly~~~~sp~~~~v~~~l~~~gi~~~~~ 33 (222)
|. .+.|.|.++|+-+.-.+.+.+..|++|-..
T Consensus 1 m~-~I~l~G~~GsGKst~a~~La~~lg~~~id~ 32 (171)
T PRK13947 1 MK-NIVLIGFMGTGKTTVGKRVATTLSFGFIDT 32 (171)
T ss_pred CC-eEEEEcCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 66 689999999999999999999999987543
No 243
>PRK15371 effector protein YopJ; Provisional
Probab=28.11 E-value=2.2e+02 Score=22.96 Aligned_cols=42 Identities=12% Similarity=0.204 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcccCCCCChhHHHHHHHHHHHH
Q 038634 122 LVTEEFFQQMKFLENELNGKDFFGGETIGFVDIVAIVVAIWFP 164 (222)
Q Consensus 122 ~~~~~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~ 164 (222)
...+++..+++.||..++++.|+ -+.++..|+-+.|.+....
T Consensus 23 ~~~~~L~~~i~~le~~~~~G~~~-~~~~~~~Di~~lp~lv~~~ 64 (287)
T PRK15371 23 ISNEELKNIITQLEDDIADGSWI-HKNYARTDLEVMPALVAQA 64 (287)
T ss_pred hhHHHHHHHHHHHHHHHHcCCCC-CchhHHhhHHhhHHHHHHH
Confidence 34567899999999999998887 4568999999999776664
No 244
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=28.07 E-value=1.5e+02 Score=18.27 Aligned_cols=53 Identities=8% Similarity=-0.025 Sum_probs=32.1
Q ss_pred ceEEEeecCChHHHHHHHHHHH----c--CCCceEEeCCCCCCchhhhhhCCCCCcccEEE
Q 038634 4 EVKLYGTWSSPFSRRIELALKL----K--GVPFEYIEEDLSNKSPELLKYNPVHKKIPVLV 58 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~l~~----~--gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~ 58 (222)
-+.+|+.++|+.|+...-.+.. . +-.+....++... ...+...... ..+|++.
T Consensus 18 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~i-~~~Pt~~ 76 (101)
T cd02961 18 VLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA-NNDLCSEYGV-RGYPTIK 76 (101)
T ss_pred EEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc-hHHHHHhCCC-CCCCEEE
Confidence 3677888999999977665543 2 3345555665443 3344333333 4689876
No 245
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=28.06 E-value=90 Score=24.49 Aligned_cols=21 Identities=10% Similarity=0.246 Sum_probs=17.2
Q ss_pred ceEEEeecCChHHHHHHHHHH
Q 038634 4 EVKLYGTWSSPFSRRIELALK 24 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~l~ 24 (222)
.+.+|.-+.||||++..--+.
T Consensus 120 ~I~vFtDp~CpyC~kl~~~l~ 140 (251)
T PRK11657 120 IVYVFADPNCPYCKQFWQQAR 140 (251)
T ss_pred EEEEEECCCChhHHHHHHHHH
Confidence 367889999999999877654
No 246
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=27.55 E-value=1.7e+02 Score=18.54 Aligned_cols=54 Identities=11% Similarity=0.010 Sum_probs=30.9
Q ss_pred ceEEEeecCChHHHHHHHHHHH----cC--CCceEEeCCCCCCchhhhhhCCCCCcccEEE
Q 038634 4 EVKLYGTWSSPFSRRIELALKL----KG--VPFEYIEEDLSNKSPELLKYNPVHKKIPVLV 58 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~l~~----~g--i~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~ 58 (222)
-+..|+.++|+.|+...-.+.. .+ -.+....++.....+.+...-.. ..+|++.
T Consensus 21 ~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i-~~~P~~~ 80 (105)
T cd02998 21 VLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGV-SGFPTLK 80 (105)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCC-CCcCEEE
Confidence 3667889999999855444322 22 23555566644423444433333 4699886
No 247
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=27.41 E-value=86 Score=19.35 Aligned_cols=22 Identities=14% Similarity=0.057 Sum_probs=17.3
Q ss_pred eEEEeecCChHHHHHHHHHHHc
Q 038634 5 VKLYGTWSSPFSRRIELALKLK 26 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~~~ 26 (222)
+.+|..+.||+|....-.+...
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~ 22 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKL 22 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHH
Confidence 4678899999999777777653
No 248
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=26.79 E-value=1.8e+02 Score=18.72 Aligned_cols=51 Identities=14% Similarity=0.202 Sum_probs=28.8
Q ss_pred eEEEeecCChHHHHHHHHHH-----Hc--CCCceEEeCCCCCCchhhh-hhCCCCCcccEEE
Q 038634 5 VKLYGTWSSPFSRRIELALK-----LK--GVPFEYIEEDLSNKSPELL-KYNPVHKKIPVLV 58 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~-----~~--gi~~~~~~v~~~~~~~~~~-~~~p~~g~vP~L~ 58 (222)
+..|+.++||.|++..-.+. +. +..+....++.... +.+. ..+. ..+|++.
T Consensus 19 lv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~-~~~~~~~~I--~~~Pt~~ 77 (104)
T cd03000 19 LVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAY-SSIASEFGV--RGYPTIK 77 (104)
T ss_pred EEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccC-HhHHhhcCC--ccccEEE
Confidence 56678889999996554432 21 33444445554332 3333 3344 4699986
No 249
>PLN02309 5'-adenylylsulfate reductase
Probab=26.21 E-value=2.1e+02 Score=24.80 Aligned_cols=53 Identities=13% Similarity=0.183 Sum_probs=31.5
Q ss_pred ceEEEeecCChHHHHHHHHHH-----HcCCCceEEeCCCCCCchhhh--hhCCCCCcccEEE
Q 038634 4 EVKLYGTWSSPFSRRIELALK-----LKGVPFEYIEEDLSNKSPELL--KYNPVHKKIPVLV 58 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~~v~~~l~-----~~gi~~~~~~v~~~~~~~~~~--~~~p~~g~vP~L~ 58 (222)
-+..|+.++|+.|+...-.+. +.+-.+....++......++. ..+- ..+|++.
T Consensus 368 vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I--~~~PTil 427 (457)
T PLN02309 368 WLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQL--GSFPTIL 427 (457)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCC--ceeeEEE
Confidence 367889999999986554442 334445556666541222332 2343 4699987
No 250
>PF03711 OKR_DC_1_C: Orn/Lys/Arg decarboxylase, C-terminal domain; InterPro: IPR008286 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 3Q16_C 3N75_A 2X3L_A 2VYC_D.
Probab=25.49 E-value=29 Score=24.50 Aligned_cols=37 Identities=27% Similarity=0.435 Sum_probs=24.6
Q ss_pred CchhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHhhc
Q 038634 40 KSPELLKYNPVHKKIPVLVHNSKPIAESQVILEYIDEIW 78 (222)
Q Consensus 40 ~~~~~~~~~p~~g~vP~L~~~g~~i~es~~I~~yL~~~~ 78 (222)
-..++.-..|. | +|+|..|..+-.++..|++||...-
T Consensus 77 Isae~i~pYPP-G-IPll~pGE~it~~~~~~i~yl~~l~ 113 (136)
T PF03711_consen 77 ISAEFIVPYPP-G-IPLLVPGERITEETEEIIDYLLALQ 113 (136)
T ss_dssp BBSS-BEECTT-T-S-SB-TTEEB-STTHHHHHHHHHHH
T ss_pred EEEeeeeecCC-C-CcEECCccccccchHHHHHHHHHHH
Confidence 34566666786 4 9998887776677899999998743
No 251
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=25.46 E-value=65 Score=24.07 Aligned_cols=20 Identities=35% Similarity=0.554 Sum_probs=18.5
Q ss_pred CCeeeeehHHHHHHHHhhcC
Q 038634 60 NSKPIAESQVILEYIDEIWN 79 (222)
Q Consensus 60 ~g~~i~es~~I~~yL~~~~~ 79 (222)
.+..|+||..|-+|+.++|+
T Consensus 154 ad~lIaDs~~I~~y~~~~y~ 173 (185)
T PF09314_consen 154 ADRLIADSKGIQDYIKERYG 173 (185)
T ss_pred CCEEEEcCHHHHHHHHHHcC
Confidence 46899999999999999998
No 252
>PF12972 NAGLU_C: Alpha-N-acetylglucosaminidase (NAGLU) C-terminal domain; InterPro: IPR024732 Alpha-N-acetylglucosaminidase is a lysosomal enzyme required for the stepwise degradation of heparan sulphate []. Mutations on the alpha-N-acetylglucosaminidase (NAGLU) gene can lead to Mucopolysaccharidosis type IIIB (MPS IIIB, or Sanfilippo syndrome type B) characterised by neurological dysfunction but relatively mild somatic manifestations []. The structure shows that the enzyme is composed of three domains. This C-terminal domain has an all alpha helical fold [].; PDB: 2VC9_A 2VCC_A 2VCB_A 2VCA_A 4A4A_A.
Probab=25.17 E-value=2e+02 Score=22.81 Aligned_cols=48 Identities=15% Similarity=0.126 Sum_probs=31.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHhcCCCC-ccc----------CCCCChhHHHHHHHHHHH
Q 038634 116 EGKERELVTEEFFQQMKFLENELNGKD-FFG----------GETIGFVDIVAIVVAIWF 163 (222)
Q Consensus 116 ~~~~~~~~~~~~~~~l~~le~~L~~~~-~l~----------G~~~t~aD~~l~~~l~~~ 163 (222)
+.+.......++.+.|..+|..|+.++ |++ |.+..-.|.+-+..=..+
T Consensus 121 d~~~~~~~~~~~l~ll~dlD~lL~t~~~f~Lg~Wi~~Ar~~g~~~~e~~~yE~NAR~qI 179 (267)
T PF12972_consen 121 DIEAFKALSARFLELLDDLDRLLATNPEFLLGKWIEDARAWGTTPEEKDLYEYNARNQI 179 (267)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHTT-GGGBHHHHHHHHHHSSTT--HHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 445556677888999999999998743 333 566777777777644333
No 253
>PF09440 eIF3_N: eIF3 subunit 6 N terminal domain; InterPro: IPR019010 This entry represents the N-terminal domain of subunit 6 (or e) (eIF3e) of the translation initiation factor eIF3. EIF3 is required in protein synthesis in mammalian cells and, together with other initiation factors, stimulates binding of initiator methionyl-tRNAi and mRNA to the 40S ribosomal subunit to form the 48 S initiation complex []. The eIF3 complex also prevents premature association of the 40 and 60 S ribosomal subunits and interacts with other initiation factors involved in start codon selection. EIF3 has at least 13 protein components (eIF3a-m or 1-13), where subunits h, i, k, and m are likely to be on the periphery of the complex []. Subunit 6 is produced by the int6 gene, one of the frequent integration sites for mouse mammary tumor viruses [].
Probab=24.87 E-value=2.5e+02 Score=19.71 Aligned_cols=30 Identities=17% Similarity=0.282 Sum_probs=15.5
Q ss_pred hHHHHHHHHhhc--C------CCCCCCCCHHHHHHHHH
Q 038634 67 SQVILEYIDEIW--N------NNPILPQDPYQRAMARF 96 (222)
Q Consensus 67 s~~I~~yL~~~~--~------~~~l~p~~~~~~~~~~~ 96 (222)
+.-|+.||+++. | +..+++.....+++.+-
T Consensus 3 T~ki~~~LDrHLvfPLLeFl~~~~iy~~~dl~~akl~L 40 (133)
T PF09440_consen 3 TSKIAPYLDRHLVFPLLEFLSDKGIYDEEDLLKAKLDL 40 (133)
T ss_pred HHHHHHHhhHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 345677777753 2 22355555445555443
No 254
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=24.61 E-value=2.4e+02 Score=21.13 Aligned_cols=58 Identities=16% Similarity=0.156 Sum_probs=31.8
Q ss_pred eEEEeecCChHHHHHHHHHH---HcCCCceEEeCCCCCCchhhhhhCCCCCcccEEE--eCCeeeeeh
Q 038634 5 VKLYGTWSSPFSRRIELALK---LKGVPFEYIEEDLSNKSPELLKYNPVHKKIPVLV--HNSKPIAES 67 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~---~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~--~~g~~i~es 67 (222)
+.-++.++|+.|+.+.=.|. .+--....+.++.... ....+. ..+|++. .+|..+..-
T Consensus 106 VV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~----~~~~~i-~~lPTlliyk~G~~v~~i 168 (192)
T cd02988 106 VVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQC----IPNYPD-KNLPTILVYRNGDIVKQF 168 (192)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHh----HhhCCC-CCCCEEEEEECCEEEEEE
Confidence 34567788888886544332 2212234444443221 233455 5799988 578766554
No 255
>PRK13949 shikimate kinase; Provisional
Probab=24.37 E-value=1.1e+02 Score=22.18 Aligned_cols=31 Identities=19% Similarity=0.114 Sum_probs=27.0
Q ss_pred CCcceEEEeecCChHHHHHHHHHHHcCCCceE
Q 038634 1 MAEEVKLYGTWSSPFSRRIELALKLKGVPFEY 32 (222)
Q Consensus 1 M~~~~~Ly~~~~sp~~~~v~~~l~~~gi~~~~ 32 (222)
|. ++.|.|.++|+-+.-.+++.+..|+++..
T Consensus 1 m~-~I~liG~~GsGKstl~~~La~~l~~~~id 31 (169)
T PRK13949 1 MA-RIFLVGYMGAGKTTLGKALARELGLSFID 31 (169)
T ss_pred Cc-EEEEECCCCCCHHHHHHHHHHHcCCCeec
Confidence 65 79999999999999999999999987654
No 256
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=24.20 E-value=1.3e+02 Score=21.92 Aligned_cols=32 Identities=22% Similarity=0.269 Sum_probs=20.5
Q ss_pred eEEEeecCChHHHHH----HHHHHHcCCCceEEeCC
Q 038634 5 VKLYGTWSSPFSRRI----ELALKLKGVPFEYIEED 36 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v----~~~l~~~gi~~~~~~v~ 36 (222)
+++|+-..||||... +-+....++.++.+.+.
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~~p~~ 36 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPALAARHGATVRYRPIL 36 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHHHHHhCCeeEEeeee
Confidence 468899999999843 33334456655555543
No 257
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=22.65 E-value=1.5e+02 Score=21.60 Aligned_cols=31 Identities=13% Similarity=0.005 Sum_probs=20.2
Q ss_pred ceEEEeecCChHHH----HHHHHHHHc--CCCceEEe
Q 038634 4 EVKLYGTWSSPFSR----RIELALKLK--GVPFEYIE 34 (222)
Q Consensus 4 ~~~Ly~~~~sp~~~----~v~~~l~~~--gi~~~~~~ 34 (222)
++.+|.-+.||||. +++-+.+.. +++++.+.
T Consensus 2 ~i~~~~D~~cp~c~~~~~~l~~l~~~~~~~~~v~~~~ 38 (193)
T cd03025 2 ELYYFIDPLCGWCYGFEPLLEKLKEEYGGGIEVELHL 38 (193)
T ss_pred eEEEEECCCCchhhCchHHHHHHHHHhCCCceEEEEe
Confidence 38899999999998 333344443 55555543
No 258
>PF03421 YopJ: YopJ Serine/Threonine acetyltransferase; InterPro: IPR005083 The infection of mammalian host cells by Yersinia sp. causes a rapid induction of the mitogen-activated protein kinase (MAPK; including the ERK, JNK and p38 pathways) and nuclear factor kappaB (NF-kappaB) signalling pathways that would typically result in cytokine production and initiation of the innate immune response. However, these pathways are rapidly inhibited promoting apoptosis. YopJ has been shown to block phosphorylation of active site residues []. It has also been shown that YopJ acetyltransferase is activated by eukaryotic host cell inositol hexakisphosphate []. Serine and threonine acetylation is yet another complication to the control of signalling pathways and may be a may be a widespread mode of biochemical regulation of endogenous processes in eukaryotic cells. It has been shown that YopJ is a serine/threonine acetyltransferase []. It acetylates the serine and threonine residues in the phosphorylation sites of MAPK kinases and nuclear factor kappaB, preventing their activation by phosphorylation and the inhibition of these signalling pathways []. This entry contains YopJ and related proteins.
Probab=22.44 E-value=2.8e+02 Score=20.55 Aligned_cols=38 Identities=13% Similarity=0.188 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhcCCCCcccCCCCChhHHHHHHHHHHHH
Q 038634 126 EFFQQMKFLENELNGKDFFGGETIGFVDIVAIVVAIWFP 164 (222)
Q Consensus 126 ~~~~~l~~le~~L~~~~~l~G~~~t~aD~~l~~~l~~~~ 164 (222)
.+..+...+++.+..+.|+ .+.++--|+-+.|.+....
T Consensus 3 ~L~~y~~~~~~~~~~g~~~-~~~~~~~D~~~lp~lv~~~ 40 (177)
T PF03421_consen 3 SLKEYIERLEDDIKNGSWP-NESYAELDIKMLPALVAAE 40 (177)
T ss_pred HHHHHHHHHHHHHHhCCCC-CcchhhhhHHHHHHHHHHH
Confidence 5678888999999988888 7789999999999876664
No 259
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=21.56 E-value=2.4e+02 Score=23.43 Aligned_cols=69 Identities=22% Similarity=0.388 Sum_probs=45.4
Q ss_pred eEEEeec---CChHHHHHHHHHHHcCCCceEEeCCCCCCchhhhhhCCCCCcccEEEeCCeeeeehHHHHHHHHhhcCCC
Q 038634 5 VKLYGTW---SSPFSRRIELALKLKGVPFEYIEEDLSNKSPELLKYNPVHKKIPVLVHNSKPIAESQVILEYIDEIWNNN 81 (222)
Q Consensus 5 ~~Ly~~~---~sp~~~~v~~~l~~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~~~g~~i~es~~I~~yL~~~~~~~ 81 (222)
+.+||.. .|||.+...-.+...| |..+..++-..+.+ + .+.|++-++|.+ .|-..++.+|.+.++..
T Consensus 79 Vl~HGL~G~s~s~y~r~L~~~~~~rg--~~~Vv~~~Rgcs~~-----~--n~~p~~yh~G~t-~D~~~~l~~l~~~~~~r 148 (345)
T COG0429 79 VLFHGLEGSSNSPYARGLMRALSRRG--WLVVVFHFRGCSGE-----A--NTSPRLYHSGET-EDIRFFLDWLKARFPPR 148 (345)
T ss_pred EEEeccCCCCcCHHHHHHHHHHHhcC--CeEEEEecccccCC-----c--ccCcceecccch-hHHHHHHHHHHHhCCCC
Confidence 3455544 5566666666777778 77777665432221 2 368999988876 77777888888877765
Q ss_pred CC
Q 038634 82 PI 83 (222)
Q Consensus 82 ~l 83 (222)
++
T Consensus 149 ~~ 150 (345)
T COG0429 149 PL 150 (345)
T ss_pred ce
Confidence 54
No 260
>cd01557 BCAT_beta_family BCAT_beta_family: Branched-chain aminotransferase catalyses the transamination of the branched-chain amino acids leusine, isoleucine and valine to their respective alpha-keto acids, alpha-ketoisocaproate, alpha-keto-beta-methylvalerate and alpha-ketoisovalerate. The enzyme requires pyridoxal 5'-phosphate (PLP) as a cofactor to catalyze the reaction. It has been found that mammals have two foms of the enzyme - mitochondrial and cytosolic forms while bacteria contain only one form of the enzyme. The mitochondrial form plays a significant role in skeletal muscle glutamine and alanine synthesis and in interorgan nitrogen metabolism.Members of this subgroup are widely distributed in all three forms of life.
Probab=21.52 E-value=92 Score=24.76 Aligned_cols=56 Identities=9% Similarity=-0.014 Sum_probs=36.5
Q ss_pred HHHHcCCCceEEeCCCCC---CchhhhhhCCCCCcccEEEeCCeee----eehHHHHHHHHhhc
Q 038634 22 ALKLKGVPFEYIEEDLSN---KSPELLKYNPVHKKIPVLVHNSKPI----AESQVILEYIDEIW 78 (222)
Q Consensus 22 ~l~~~gi~~~~~~v~~~~---~~~~~~~~~p~~g~vP~L~~~g~~i----~es~~I~~yL~~~~ 78 (222)
+++..|++++...+.+.+ -.+-|.-.+.. |-+||-..++..+ .....|.+.|.+.+
T Consensus 211 ~~~~~Gi~v~e~~i~~~~l~~ade~f~~ns~~-gi~pV~~i~~~~~~~~~~~~gp~~~~l~~~~ 273 (279)
T cd01557 211 LARDLGIKVEERPITRDELYEADEVFATGTAA-VVTPVGEIDYRGKEPGEGEVGPVTKKLYDLL 273 (279)
T ss_pred HHHHcCCeEEEEeCCHHHHhhCCEEEEeccee-EEEEEEEEccccccCCCCCCCHHHHHHHHHH
Confidence 567789999998887642 23334433444 7899999877665 44566666665543
No 261
>PF11732 Thoc2: Transcription- and export-related complex subunit; InterPro: IPR021726 The THO/TREX complex is the transcription- and export-related complex associated with spliceosomes that preferentially deal with spliced mRNAs as opposed to unspliced mRNAs. Thoc2 plays a role in RNA polymerase II (RNA pol II)-dependent transcription and is required for the stability of DNA repeats []. In humans, the TRE complex is comprised of the exon-junction-associated proteins Aly/REF and UAP56 together with the THO proteins THOC1 (hHpr1/p84), Thoc2 (hRlr1), THOC3 (hTex1), THOC5 (fSAP79), THOC6 (fSAP35), and THOC7 (fSAP24). Although much evidence indicates that the function of the TREX complex as an adaptor between the mRNA and components of the export machinery is conserved among eukaryotes, in Drosophila the majority of mRNAs can be exported from the nucleus independently of the THO complex []. This entry represents a conserved domain found towards the N terminus of these proteins.
Probab=20.96 E-value=1.9e+02 Score=18.23 Aligned_cols=34 Identities=6% Similarity=0.234 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhhhhhhccccCCcCccchHHHHHHHHH
Q 038634 153 DIVAIVVAIWFPLTQEVLGVETFTEEKFPVLFKWIRKIT 191 (222)
Q Consensus 153 D~~l~~~l~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~ 191 (222)
|+..|+++.++.... .... .+.--++..|.+++.
T Consensus 43 DvL~~~ll~~L~~~~---r~~~--k~dg~~~s~Wlq~La 76 (77)
T PF11732_consen 43 DVLTFCLLERLSNPG---RSRL--KDDGTNISQWLQSLA 76 (77)
T ss_pred HHHHHHHHHHHhccc---chhc--CcCCCCHHHHHHHHh
Confidence 999999988884211 1122 244578999998875
No 262
>COG5515 Uncharacterized conserved small protein [Function unknown]
Probab=20.91 E-value=1.2e+02 Score=18.11 Aligned_cols=21 Identities=38% Similarity=0.540 Sum_probs=15.7
Q ss_pred eEEEeec----CChHHHHHHHHHHH
Q 038634 5 VKLYGTW----SSPFSRRIELALKL 25 (222)
Q Consensus 5 ~~Ly~~~----~sp~~~~v~~~l~~ 25 (222)
|+||.+- .|.||+||-.+|..
T Consensus 3 mKLYRfiTGpDDssFChrvta~LN~ 27 (70)
T COG5515 3 MKLYRFITGPDDSSFCHRVTAALNK 27 (70)
T ss_pred ceeeEeecCCchHHHHHHHHHHHhC
Confidence 7777543 56789999988864
No 263
>cd00449 PLPDE_IV PyridoxaL 5'-Phosphate Dependent Enzymes class IV (PLPDE_IV). This D-amino acid superfamily, one of five classes of PLPDE, consists of branched-chain amino acid aminotransferases (BCAT), D-amino acid transferases (DAAT), and 4-amino-4-deoxychorismate lyases (ADCL). BCAT catalyzes the reversible transamination reaction between the L-branched-chain amino and alpha-keto acids. DAAT catalyzes the synthesis of D-glutamic acid and D-alanine, and ADCL converts 4-amino-4-deoxychorismate to p-aminobenzoate and pyruvate. Except for a few enzymes, i. e., Escherichia coli and Salmonella BCATs, which are homohexamers arranged as a double trimer, the class IV PLPDEs are homodimers. Homodimer formation is required for catalytic activity.
Probab=20.63 E-value=1.3e+02 Score=23.28 Aligned_cols=55 Identities=16% Similarity=0.186 Sum_probs=35.8
Q ss_pred HHHHcCCCceEEeCCCCC---CchhhhhhCCCCCcccEEEeCCeee--eehHHHHHHHHhh
Q 038634 22 ALKLKGVPFEYIEEDLSN---KSPELLKYNPVHKKIPVLVHNSKPI--AESQVILEYIDEI 77 (222)
Q Consensus 22 ~l~~~gi~~~~~~v~~~~---~~~~~~~~~p~~g~vP~L~~~g~~i--~es~~I~~yL~~~ 77 (222)
.++..|++++...+.+.+ ..+-|.- |...|-+||-..++..+ .....|.+.|.+.
T Consensus 196 ~~~~~g~~v~e~~i~~~dL~~adevfl~-ns~~gv~pV~~i~~~~~~~~~~~~~~~~l~~~ 255 (256)
T cd00449 196 LAKELGIKVEERPISLDELYAADEVFLT-GTAAEVTPVTEIDGRGIGDGKPGPVTRKLREL 255 (256)
T ss_pred HHHHcCCeEEEEecCHHHHhhCCEEEEc-cccceEEEEEEECCeecCCCCCCHHHHHHHHh
Confidence 467789999988887642 2333443 44337899999877665 3456777766543
No 264
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=20.21 E-value=2.4e+02 Score=17.77 Aligned_cols=51 Identities=14% Similarity=0.081 Sum_probs=28.7
Q ss_pred eEEEeecCChHHHHHHHHHH-----HcCCCceEEeCCCCCCchhhhhhCCCCCcccEEE
Q 038634 5 VKLYGTWSSPFSRRIELALK-----LKGVPFEYIEEDLSNKSPELLKYNPVHKKIPVLV 58 (222)
Q Consensus 5 ~~Ly~~~~sp~~~~v~~~l~-----~~gi~~~~~~v~~~~~~~~~~~~~p~~g~vP~L~ 58 (222)
+.+++.++|+.|+...-.+. +.+ .+....++......-....+.. .+|++.
T Consensus 22 lv~f~a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~id~~~~~~~~~~~~i~--~~P~~~ 77 (103)
T cd03001 22 LVEFYAPWCGHCKNLAPEWKKAAKALKG-IVKVGAVDADVHQSLAQQYGVR--GFPTIK 77 (103)
T ss_pred EEEEECCCCHHHHHHhHHHHHHHHHhcC-CceEEEEECcchHHHHHHCCCC--ccCEEE
Confidence 56778889999986543332 222 2444455544333333444553 599876
Done!