BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038636
(409 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 97.4 bits (241), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 97/315 (30%), Positives = 147/315 (46%), Gaps = 43/315 (13%)
Query: 33 DTQVLRLLKRSI-DPNTIPRSSFLDSWDFKLDPCESSGGQFLGILCSIPSDNSTSRITAI 91
D Q L +K+ + +P T L SW D C + +LG+LC +D T R+
Sbjct: 7 DKQALLQIKKDLGNPTT------LSSWLPTTDCCNRT---WLGVLCD--TDTQTYRVNN- 54
Query: 92 YLDSSGYD---GFLTPS-IGNLTELTTLDLSR-NNFRGPIPDTITDLRKLTTLYLPGNFF 146
LD SG + + PS + NL L L + NN GPIP I L +L LY+
Sbjct: 55 -LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNV 113
Query: 147 TGNIPVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTALRLSHNAFSGKIPSLTGAWQ 206
+G IP ++++K L TLD S+N+LSG +P +S L +L + N SG IP G++
Sbjct: 114 SGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS 173
Query: 207 --LHTLDLDSNQLYGNLPKFPTSLRTXXXXXXXXXXXXXXXXXXVNLKSLDLSSNRFTGA 264
++ + N+L G +P PT +NL +DLS N G
Sbjct: 174 KLFTSMTISRNRLTGKIP--PT-------------------FANLNLAFVDLSRNMLEGD 212
Query: 265 ISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLT 324
S + I ++ N L A ++ + +L LD++ N + G LP L L+ L
Sbjct: 213 ASVLFGSDKNTQKIHLAKNSL-AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH 271
Query: 325 SINLARNQLSGHIPK 339
S+N++ N L G IP+
Sbjct: 272 SLNVSFNNLCGEIPQ 286
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 1/111 (0%)
Query: 259 NRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLV 318
N G I + L Q+ + ++ ++ LS L LD N L G LP ++
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS 146
Query: 319 SLRNLTSINLARNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWGNLPPEFSS 369
SL NL I N++SG IP YG+ + S+ + N L G +PP F++
Sbjct: 147 SLPNLVGITFDGNRISGAIPDSYGS-FSKLFTSMTISRNRLTGKIPPTFAN 196
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 106 IGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDL 165
+G L LDL N G +P +T L+ L +L + N G IP G LQ D+
Sbjct: 240 VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG----GNLQRFDV 295
Query: 166 S 166
S
Sbjct: 296 S 296
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 95.5 bits (236), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 95/327 (29%), Positives = 140/327 (42%), Gaps = 63/327 (19%)
Query: 70 GQFLGILCSIPSDNSTSRITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDT 129
G L LC P + + +YL ++G+ G + P++ N +EL +L LS N G IP +
Sbjct: 382 GPILPNLCQNPKN----TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS 437
Query: 130 ITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTALRL 189
+ L KL L L N G IP + +K L+TL L N L+G IP+ LS +L + L
Sbjct: 438 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL 497
Query: 190 SHNAFSGKIPSLTGAWQ-LHTLDLDSNQLYGNLPKFPTSLRTXXXXXXXXXXXXXXXXXX 248
S+N +G+IP G + L L L +N GN+P R+
Sbjct: 498 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS------------------ 539
Query: 249 VNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNL 308
L LDL++N F G I + S ++ N + + D +E GNL
Sbjct: 540 --LIWLDLNTNLFNGTIPAAMFK----QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL 593
Query: 309 LRGH----LPINLVSLRNLTSI----------------------NLARNQLSGHIPKVYG 342
L +N +S RN +I +++ N LSG+IPK G
Sbjct: 594 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG 653
Query: 343 AKLGSSWRSLF---LDHNFLWGNLPPE 366
S LF L HN + G++P E
Sbjct: 654 -----SMPYLFILNLGHNDISGSIPDE 675
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 94/327 (28%), Positives = 141/327 (43%), Gaps = 57/327 (17%)
Query: 107 GNLTELTTLDLSRNNFRGPIP-------------------------DTITDLRKLTTLYL 141
G LT LDLS N+F G +P DT+ +R L L L
Sbjct: 291 GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL 350
Query: 142 PGNFFTGNIPVGITRL-KKLQTLDLSHNSLSGIIPAQL--SGLRSLTALRLSHNAFSGKI 198
N F+G +P +T L L TLDLS N+ SG I L + +L L L +N F+GKI
Sbjct: 351 SFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI 410
Query: 199 -PSLTGAWQLHTLDLDSNQLYGNLPKFPTSLRTXXXXXXXXXXXXXXXXXXVNLKSLDLS 257
P+L+ +L +L L N L G +P SL L+ L L
Sbjct: 411 PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK--------------------LRDLKLW 450
Query: 258 SNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINL 317
N G I E++ + + ++ + N LT + LS T+L + + N L G +P +
Sbjct: 451 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 510
Query: 318 VSLRNLTSINLARNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWGNLPPEFSSSITRIRGS 377
L NL + L+ N SG+IP G W L L+ N G +P +++ + G
Sbjct: 511 GRLENLAILKLSNNSFSGNIPAELGDCRSLIW--LDLNTNLFNGTIP----AAMFKQSGK 564
Query: 378 LAKNCLSCPETIRLCHGGQRPASECVG 404
+A N ++ + + + G + EC G
Sbjct: 565 IAANFIAGKRYVYIKNDGMK--KECHG 589
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 91/269 (33%), Positives = 123/269 (45%), Gaps = 28/269 (10%)
Query: 104 PSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTL 163
P +G+ + L LD+S N G I+ +L L + N F G IP LK LQ L
Sbjct: 217 PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYL 274
Query: 164 DLSHNSLSGIIPAQLSG-LRSLTALRLSHNAFSGKIPSLTG-AWQLHTLDLDSNQLYGNL 221
L+ N +G IP LSG +LT L LS N F G +P G L +L L SN G L
Sbjct: 275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 334
Query: 222 PKFPTSLRTXXXXXXXXXXXXXXXXXXVNLKSLDLSSNRFTGAISHEVLTL-PQVVSIDV 280
P T L+ LK LDLS N F+G + + L ++++D+
Sbjct: 335 P-MDTLLKMR------------------GLKVLDLSFNEFSGELPESLTNLSASLLTLDL 375
Query: 281 SVNRLTAIEMTTLSGDTH--LQELDVQGNLLRGHLPINLVSLRNLTSINLARNQLSGHIP 338
S N + + L + LQEL +Q N G +P L + L S++L+ N LSG IP
Sbjct: 376 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP 435
Query: 339 KVYGAKLGSSWRSLFLDHNFLWGNLPPEF 367
G+ S R L L N L G +P E
Sbjct: 436 SSLGSL--SKLRDLKLWLNMLEGEIPQEL 462
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 54/104 (51%)
Query: 98 YDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRL 157
Y G +P+ N + LD+S N G IP I + L L L N +G+IP + L
Sbjct: 620 YGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDL 679
Query: 158 KKLQTLDLSHNSLSGIIPAQLSGLRSLTALRLSHNAFSGKIPSL 201
+ L LDLS N L G IP +S L LT + LS+N SG IP +
Sbjct: 680 RGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 101/334 (30%), Positives = 142/334 (42%), Gaps = 69/334 (20%)
Query: 112 LTTLDLSRNNFRGPIPDTITDL---RKLTTLYLPGNF--FTGNIPVGITRLKKLQTLDLS 166
LT+LDLSRN+ GP+ T+T L L L + N F G + G+ +L L+ LDLS
Sbjct: 102 LTSLDLSRNSLSGPV-TTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLS 159
Query: 167 HNSLSG-------------------IIPAQLSG------LRSLTALRLSHNAFSGKIPSL 201
NS+SG I ++SG +L L +S N FS IP L
Sbjct: 160 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFL 219
Query: 202 TGAWQLHTLDLDSNQLYGNLPKFPTSLRTXXXXXXXXXXXXXXXXXXVNLKSLDLSSNRF 261
L LD+ N+L G+ F ++ T LK L++SSN+F
Sbjct: 220 GDCSALQHLDISGNKLSGD---FSRAIST-----------------CTELKLLNISSNQF 259
Query: 262 TGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSG--DTHLQELDVQGNLLRGHLPINLVS 319
G I L L + + ++ N+ T LSG DT L LD+ GN G +P S
Sbjct: 260 VGPIPP--LPLKSLQYLSLAENKFTGEIPDFLSGACDT-LTGLDLSGNHFYGAVPPFFGS 316
Query: 320 LRNLTSINLARNQLSGHIP-----KVYGAKLGSSWRSLFLDHNFLWGNLPPEFSS-SITR 373
L S+ L+ N SG +P K+ G K+ L L N G LP ++ S +
Sbjct: 317 CSLLESLALSSNNFSGELPMDTLLKMRGLKV------LDLSFNEFSGELPESLTNLSASL 370
Query: 374 IRGSLAKNCLSCPETIRLCHGGQRPASECVGQND 407
+ L+ N S P LC + E QN+
Sbjct: 371 LTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 404
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 60/128 (46%), Gaps = 1/128 (0%)
Query: 98 YDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRL 157
+ G + + L+ +++ + G T + + L + N +G IP I +
Sbjct: 596 FQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM 655
Query: 158 KKLQTLDLSHNSLSGIIPAQLSGLRSLTALRLSHNAFSGKIPSLTGAWQLHT-LDLDSNQ 216
L L+L HN +SG IP ++ LR L L LS N G+IP A + T +DL +N
Sbjct: 656 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715
Query: 217 LYGNLPKF 224
L G +P+
Sbjct: 716 LSGPIPEM 723
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 67/257 (26%), Positives = 94/257 (36%), Gaps = 68/257 (26%)
Query: 79 IPSD-NSTSRITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKL- 136
IPS ++ + + I L ++ G + IG L L L LS N+F G IP + D R L
Sbjct: 482 IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLI 541
Query: 137 -----TTLY--------------LPGNFFTGNIPVGITRLKKLQTLDLSHNSLS--GIIP 175
T L+ + NF G V I + + N L GI
Sbjct: 542 WLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRS 601
Query: 176 AQLSGLR------------------------SLTALRLSHNAFSGKIPSLTGAW-QLHTL 210
QL+ L S+ L +S+N SG IP G+ L L
Sbjct: 602 EQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFIL 661
Query: 211 DLDSNQLYGNLPKFPTSLRTXXXXXXXXXXXXXXXXXXVNLKSLDLSSNRFTGAISHEVL 270
+L N + G++P LR L LDLSSN+ G I +
Sbjct: 662 NLGHNDISGSIPDEVGDLR--------------------GLNILDLSSNKLDGRIPQAMS 701
Query: 271 TLPQVVSIDVSVNRLTA 287
L + ID+S N L+
Sbjct: 702 ALTMLTEIDLSNNNLSG 718
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 94.7 bits (234), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 95/327 (29%), Positives = 140/327 (42%), Gaps = 63/327 (19%)
Query: 70 GQFLGILCSIPSDNSTSRITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDT 129
G L LC P + + +YL ++G+ G + P++ N +EL +L LS N G IP +
Sbjct: 379 GPILPNLCQNPKN----TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS 434
Query: 130 ITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTALRL 189
+ L KL L L N G IP + +K L+TL L N L+G IP+ LS +L + L
Sbjct: 435 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL 494
Query: 190 SHNAFSGKIPSLTGAWQ-LHTLDLDSNQLYGNLPKFPTSLRTXXXXXXXXXXXXXXXXXX 248
S+N +G+IP G + L L L +N GN+P R+
Sbjct: 495 SNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS------------------ 536
Query: 249 VNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNL 308
L LDL++N F G I + S ++ N + + D +E GNL
Sbjct: 537 --LIWLDLNTNLFNGTIPAAMFK----QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL 590
Query: 309 LRGH----LPINLVSLRNLTSI----------------------NLARNQLSGHIPKVYG 342
L +N +S RN +I +++ N LSG+IPK G
Sbjct: 591 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG 650
Query: 343 AKLGSSWRSLF---LDHNFLWGNLPPE 366
S LF L HN + G++P E
Sbjct: 651 -----SMPYLFILNLGHNDISGSIPDE 672
Score = 88.6 bits (218), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 94/327 (28%), Positives = 141/327 (43%), Gaps = 57/327 (17%)
Query: 107 GNLTELTTLDLSRNNFRGPIP-------------------------DTITDLRKLTTLYL 141
G LT LDLS N+F G +P DT+ +R L L L
Sbjct: 288 GACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL 347
Query: 142 PGNFFTGNIPVGITRL-KKLQTLDLSHNSLSGIIPAQL--SGLRSLTALRLSHNAFSGKI 198
N F+G +P +T L L TLDLS N+ SG I L + +L L L +N F+GKI
Sbjct: 348 SFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKI 407
Query: 199 -PSLTGAWQLHTLDLDSNQLYGNLPKFPTSLRTXXXXXXXXXXXXXXXXXXVNLKSLDLS 257
P+L+ +L +L L N L G +P SL L+ L L
Sbjct: 408 PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK--------------------LRDLKLW 447
Query: 258 SNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINL 317
N G I E++ + + ++ + N LT + LS T+L + + N L G +P +
Sbjct: 448 LNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI 507
Query: 318 VSLRNLTSINLARNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWGNLPPEFSSSITRIRGS 377
L NL + L+ N SG+IP G W L L+ N G +P +++ + G
Sbjct: 508 GRLENLAILKLSNNSFSGNIPAELGDCRSLIW--LDLNTNLFNGTIP----AAMFKQSGK 561
Query: 378 LAKNCLSCPETIRLCHGGQRPASECVG 404
+A N ++ + + + G + EC G
Sbjct: 562 IAANFIAGKRYVYIKNDGMK--KECHG 586
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 91/269 (33%), Positives = 123/269 (45%), Gaps = 28/269 (10%)
Query: 104 PSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTL 163
P +G+ + L LD+S N G I+ +L L + N F G IP LK LQ L
Sbjct: 214 PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP--LPLKSLQYL 271
Query: 164 DLSHNSLSGIIPAQLSG-LRSLTALRLSHNAFSGKIPSLTG-AWQLHTLDLDSNQLYGNL 221
L+ N +G IP LSG +LT L LS N F G +P G L +L L SN G L
Sbjct: 272 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 331
Query: 222 PKFPTSLRTXXXXXXXXXXXXXXXXXXVNLKSLDLSSNRFTGAISHEVLTL-PQVVSIDV 280
P T L+ LK LDLS N F+G + + L ++++D+
Sbjct: 332 P-MDTLLKMR------------------GLKVLDLSFNEFSGELPESLTNLSASLLTLDL 372
Query: 281 SVNRLTAIEMTTLSGDTH--LQELDVQGNLLRGHLPINLVSLRNLTSINLARNQLSGHIP 338
S N + + L + LQEL +Q N G +P L + L S++L+ N LSG IP
Sbjct: 373 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP 432
Query: 339 KVYGAKLGSSWRSLFLDHNFLWGNLPPEF 367
G+ S R L L N L G +P E
Sbjct: 433 SSLGSL--SKLRDLKLWLNMLEGEIPQEL 459
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 83/291 (28%), Positives = 129/291 (44%), Gaps = 28/291 (9%)
Query: 78 SIPSD-NSTSRITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKL 136
+IPS S S++ + L + +G + + + L TL L N+ G IP +++ L
Sbjct: 430 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 489
Query: 137 TTLYLPGNFFTGNIPVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTALRLSHNAF-- 194
+ L N TG IP I RL+ L L LS+NS SG IPA+L RSL L L+ N F
Sbjct: 490 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 549
Query: 195 ---------SGKIPS--LTGAWQLHTLDLDSNQL---YGNLPKFPT---------SLRTX 231
SGKI + + G ++ + + GNL +F S R
Sbjct: 550 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP 609
Query: 232 XXXXXXXXXXXXXXXXXVN--LKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIE 289
N + LD+S N +G I E+ ++P + +++ N ++
Sbjct: 610 CNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI 669
Query: 290 MTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLTSINLARNQLSGHIPKV 340
+ L LD+ N L G +P + +L LT I+L+ N LSG IP++
Sbjct: 670 PDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 720
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 101/334 (30%), Positives = 142/334 (42%), Gaps = 69/334 (20%)
Query: 112 LTTLDLSRNNFRGPIPDTITDL---RKLTTLYLPGNF--FTGNIPVGITRLKKLQTLDLS 166
LT+LDLSRN+ GP+ T+T L L L + N F G + G+ +L L+ LDLS
Sbjct: 99 LTSLDLSRNSLSGPV-TTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLS 156
Query: 167 HNSLSG-------------------IIPAQLSG------LRSLTALRLSHNAFSGKIPSL 201
NS+SG I ++SG +L L +S N FS IP L
Sbjct: 157 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFL 216
Query: 202 TGAWQLHTLDLDSNQLYGNLPKFPTSLRTXXXXXXXXXXXXXXXXXXVNLKSLDLSSNRF 261
L LD+ N+L G+ F ++ T LK L++SSN+F
Sbjct: 217 GDCSALQHLDISGNKLSGD---FSRAIST-----------------CTELKLLNISSNQF 256
Query: 262 TGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSG--DTHLQELDVQGNLLRGHLPINLVS 319
G I L L + + ++ N+ T LSG DT L LD+ GN G +P S
Sbjct: 257 VGPI--PPLPLKSLQYLSLAENKFTGEIPDFLSGACDT-LTGLDLSGNHFYGAVPPFFGS 313
Query: 320 LRNLTSINLARNQLSGHIP-----KVYGAKLGSSWRSLFLDHNFLWGNLPPEFSS-SITR 373
L S+ L+ N SG +P K+ G K+ L L N G LP ++ S +
Sbjct: 314 CSLLESLALSSNNFSGELPMDTLLKMRGLKV------LDLSFNEFSGELPESLTNLSASL 367
Query: 374 IRGSLAKNCLSCPETIRLCHGGQRPASECVGQND 407
+ L+ N S P LC + E QN+
Sbjct: 368 LTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 401
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 58/118 (49%), Gaps = 4/118 (3%)
Query: 112 LTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVG-ITRLKKLQTLDLSHNSL 170
L L LS N+F + + LT LY+ GN ++ VG + +L LQTLDLSHN +
Sbjct: 300 LKKLVLSVNHFDQLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDI 359
Query: 171 --SGIIPAQLSGLRSLTALRLSHNAFSG-KIPSLTGAWQLHTLDLDSNQLYGNLPKFP 225
S QL L L L LSHN G + + QL LDL +L+ N P+ P
Sbjct: 360 EASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSP 417
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 50/121 (41%), Gaps = 6/121 (4%)
Query: 104 PSIGN-----LTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLK 158
P+I N L LT LDL+R DT +L+TL L GN + K
Sbjct: 43 PTIHNRTFSRLMNLTFLDLTRCQINWIHEDTFQSHHQLSTLVLTGNPLIFMAETSLNGPK 102
Query: 159 KLQTLDLSHNSLSGIIPAQLSGLRSLTALRLSHNAFSG-KIPSLTGAWQLHTLDLDSNQL 217
L+ L L +S + + L +L +L L N S K P A L LD +N +
Sbjct: 103 SLKHLFLIQTGISNLEFIPVHNLENLESLYLGSNHISSIKFPKDFPARNLKVLDFQNNAI 162
Query: 218 Y 218
+
Sbjct: 163 H 163
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 251 LKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLR 310
L +LDLS N+ ++ TLP + +DVS NRLT++ + L G LQEL ++GN L+
Sbjct: 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 311 GHLPINLVSLRNLTSINLARNQLS 334
P L L ++LA NQL+
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNQLT 161
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 104 PSIGN-LTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQT 162
P +G L LT LD+S N + L +L LYL GN P +T KL+
Sbjct: 93 PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152
Query: 163 LDLSHNSLSGIIPAQLSGLRSLTALRLSHNAF 194
L L++N L+ + L+GL +L L L N+
Sbjct: 153 LSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 251 LKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLR 310
L +LDLS N+ ++ TLP + +DVS NRLT++ + L G LQEL ++GN L+
Sbjct: 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 311 GHLPINLVSLRNLTSINLARNQLS 334
P L L ++LA NQL+
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNQLT 161
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 104 PSIGN-LTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQT 162
P +G L LT LD+S N + L +L LYL GN P +T KL+
Sbjct: 93 PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152
Query: 163 LDLSHNSLSGIIPAQLSGLRSLTALRLSHNAF 194
L L++N L+ + L+GL +L L L N+
Sbjct: 153 LSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 251 LKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLR 310
L +LDLS N+ ++ TLP + +DVS NRLT++ + L G LQEL ++GN L+
Sbjct: 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 311 GHLPINLVSLRNLTSINLARNQLS 334
P L L ++LA NQL+
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNQLT 161
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 104 PSIGN-LTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQT 162
P +G L LT LD+S N + L +L LYL GN P +T KL+
Sbjct: 93 PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152
Query: 163 LDLSHNSLSGIIPAQLSGLRSLTALRLSHNAF 194
L L++N L+ + L+GL +L L L N+
Sbjct: 153 LSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 251 LKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLR 310
L +LDLS N+ ++ TLP + +DVS NRLT++ + L G LQEL ++GN L+
Sbjct: 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 311 GHLPINLVSLRNLTSINLARNQLS 334
P L L ++LA NQL+
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNQLT 161
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 104 PSIGN-LTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQT 162
P +G L LT LD+S N + L +L LYL GN P +T KL+
Sbjct: 93 PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152
Query: 163 LDLSHNSLSGIIPAQLSGLRSLTALRLSHNAF 194
L L++N L+ + L+GL +L L L N+
Sbjct: 153 LSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 110/249 (44%), Gaps = 42/249 (16%)
Query: 109 LTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHN 168
L LT ++ S N P + +L KL + + N P+ L L L L +N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLA--NLTNLTGLTLFNN 117
Query: 169 SLSGIIPAQLSGLRSLTALRLSHNAFSGKIPSLTGAWQLHTLDLDSNQLYGNLPKFPTSL 228
++ I P L L +L L LS N S I +L+G L L+ SNQ+ T L
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTIS-DISALSGLTSLQQLNFSSNQV--------TDL 166
Query: 229 RTXXXXXXXXXXXXXXXXXXVNLKSLDLSSNRFTG-AISHEVLTLPQVVSIDVSVNRLTA 287
+ L+ LD+SSN+ + ++ ++ L +++ + ++ +T
Sbjct: 167 KPLANLTT--------------LERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP 212
Query: 288 IEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLTSINLARNQLSGHIP-----KVYG 342
+ + T +L EL + GN L+ L SL NLT ++LA NQ+S P K+
Sbjct: 213 LGILT-----NLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAPLSGLTKLTE 265
Query: 343 AKLGSSWRS 351
KLG++ S
Sbjct: 266 LKLGANQIS 274
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 107/249 (42%), Gaps = 42/249 (16%)
Query: 109 LTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHN 168
L LT ++ S N P + +L KL + + N P+ L L L L +N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLA--NLTNLTGLTLFNN 117
Query: 169 SLSGIIPAQLSGLRSLTALRLSHNAFSGKIPSLTGAWQLHTLDLDSNQLYGNLPKFPTSL 228
++ I P L L +L L LS N S I +L+G L L SNQ+ P
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTIS-DISALSGLTSLQQLSFSSNQVTDLKP------ 168
Query: 229 RTXXXXXXXXXXXXXXXXXXVNLKSLDLSSNRFTG-AISHEVLTLPQVVSIDVSVNRLTA 287
L+ LD+SSN+ + ++ ++ L +++ + ++ +T
Sbjct: 169 ----------------LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP 212
Query: 288 IEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLTSINLARNQLSGHIP-----KVYG 342
+ + T +L EL + GN L+ L SL NLT ++LA NQ+S P K+
Sbjct: 213 LGILT-----NLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAPLSGLTKLTE 265
Query: 343 AKLGSSWRS 351
KLG++ S
Sbjct: 266 LKLGANQIS 274
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 107/249 (42%), Gaps = 42/249 (16%)
Query: 109 LTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHN 168
L LT ++ S N P + +L KL + + N P+ L L L L +N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLA--NLTNLTGLTLFNN 117
Query: 169 SLSGIIPAQLSGLRSLTALRLSHNAFSGKIPSLTGAWQLHTLDLDSNQLYGNLPKFPTSL 228
++ I P L L +L L LS N S I +L+G L L SNQ+ P
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTIS-DISALSGLTSLQQLSFSSNQVTDLKP------ 168
Query: 229 RTXXXXXXXXXXXXXXXXXXVNLKSLDLSSNRFTG-AISHEVLTLPQVVSIDVSVNRLTA 287
L+ LD+SSN+ + ++ ++ L +++ + ++ +T
Sbjct: 169 ----------------LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP 212
Query: 288 IEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLTSINLARNQLSGHIP-----KVYG 342
+ + T +L EL + GN L+ L SL NLT ++LA NQ+S P K+
Sbjct: 213 LGILT-----NLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAPLSGLTKLTE 265
Query: 343 AKLGSSWRS 351
KLG++ S
Sbjct: 266 LKLGANQIS 274
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 251 LKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLR 310
L +LDLS N+ ++ TLP + +DVS NRLT++ + L G LQEL ++GN L+
Sbjct: 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 311 GHLPINLVSLRNLTSINLARNQLS 334
P L L ++LA N L+
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNDLT 161
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Query: 104 PSIGN-LTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQT 162
P +G L LT LD+S N + L +L LYL GN P +T KL+
Sbjct: 93 PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152
Query: 163 LDLSHNSLSGIIPAQLSGLRSLTALRLSHNAF 194
L L++N L+ + L+GL +L L L N+
Sbjct: 153 LSLANNDLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 251 LKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLR 310
L +LDLS N+ ++ TLP + +DVS NRLT++ + L G LQEL ++GN L+
Sbjct: 80 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 138
Query: 311 GHLPINLVSLRNLTSINLARNQLS 334
P L L ++LA N L+
Sbjct: 139 TLPPGLLTPTPKLEKLSLANNNLT 162
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 104 PSIGN-LTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQT 162
P +G L LT LD+S N + L +L LYL GN P +T KL+
Sbjct: 94 PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 153
Query: 163 LDLSHNSLSGIIPAQLSGLRSLTALRLSHNAF 194
L L++N+L+ + L+GL +L L L N+
Sbjct: 154 LSLANNNLTELPAGLLNGLENLDTLLLQENSL 185
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 251 LKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLR 310
L +LDLS N+ ++ TLP + +DVS NRLT++ + L G LQEL ++GN L+
Sbjct: 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 311 GHLPINLVSLRNLTSINLARNQLS 334
P L L ++LA N L+
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLT 161
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 104 PSIGN-LTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQT 162
P +G L LT LD+S N + L +L LYL GN P +T KL+
Sbjct: 93 PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152
Query: 163 LDLSHNSLSGIIPAQLSGLRSLTALRLSHNAF 194
L L++N+L+ + L+GL +L L L N+
Sbjct: 153 LSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 251 LKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLR 310
L +LDLS N+ ++ TLP + +DVS NRLT++ + L G LQEL ++GN L+
Sbjct: 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 311 GHLPINLVSLRNLTSINLARNQLS 334
P L L ++LA N L+
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLT 161
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 104 PSIGN-LTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQT 162
P +G L LT LD+S N + L +L LYL GN P +T KL+
Sbjct: 93 PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152
Query: 163 LDLSHNSLSGIIPAQLSGLRSLTALRLSHNAF 194
L L++N+L+ + L+GL +L L L N+
Sbjct: 153 LSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 109 LTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGN-IPVGITRLKKLQTLDLSH 167
L L LD+S + R L L L + GN F N +P T L+ L LDLS
Sbjct: 125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 184
Query: 168 NSLSGIIPAQLSGLRSLTALRLSHNAF 194
L + P + L SL L +SHN F
Sbjct: 185 CQLEQLSPTAFNSLSSLQVLNMSHNNF 211
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 109 LTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGN-IPVGITRLKKLQTLDLSH 167
L L LD+S + R L L L + GN F N +P T L+ L LDLS
Sbjct: 444 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 503
Query: 168 NSLSGIIPAQLSGLRSLTALRLSHNAF 194
L + P + L SL L +SHN F
Sbjct: 504 CQLEQLSPTAFNSLSSLQVLNMSHNNF 530
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 2/115 (1%)
Query: 105 SIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLD 164
S + EL LDLSR + L L+TL L GN + L LQ L
Sbjct: 71 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130
Query: 165 LSHNSLSGIIPAQLSGLRSLTALRLSHNAF-SGKIPS-LTGAWQLHTLDLDSNQL 217
+L+ + + L++L L ++HN S K+P + L LDL SN++
Sbjct: 131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 18/132 (13%)
Query: 252 KSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGN---- 307
K+LDLS N S+ + P++ +D+S + IE +HL L + GN
Sbjct: 55 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 114
Query: 308 LLRGHLPINLVSLRNLTSI--NLA--RNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWGNL 363
L G L SL+ L ++ NLA N GH+ + + L + HN +
Sbjct: 115 LALGAFS-GLSSLQKLVAVETNLASLENFPIGHLKTL---------KELNVAHNLIQSFK 164
Query: 364 PPEFSSSITRIR 375
PE+ S++T +
Sbjct: 165 LPEYFSNLTNLE 176
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 251 LKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLR 310
L +LDLS N+ ++ TLP + +DVS NRLT++ + L G LQEL ++GN L+
Sbjct: 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 311 GHLPINLVSLRNLTSINLARNQLS 334
P L L ++LA N L+
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLT 161
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 104 PSIGN-LTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQT 162
P +G L LT LD+S N + L +L LYL GN P +T KL+
Sbjct: 93 PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152
Query: 163 LDLSHNSLSGIIPAQLSGLRSLTALRLSHNAF 194
L L++N+L+ + L+GL +L L L N+
Sbjct: 153 LSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 251 LKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLR 310
L +LDLS N+ ++ TLP + +DVS NRLT++ + L G LQEL ++GN L+
Sbjct: 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137
Query: 311 GHLPINLVSLRNLTSINLARNQLS 334
P L L ++LA N L+
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLT 161
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 104 PSIGN-LTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQT 162
P +G L LT LD+S N + L +L LYL GN P +T KL+
Sbjct: 93 PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEK 152
Query: 163 LDLSHNSLSGIIPAQLSGLRSLTALRLSHNAF 194
L L++N+L+ + L+GL +L L L N+
Sbjct: 153 LSLANNNLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Query: 109 LTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGN-IPVGITRLKKLQTLDLSH 167
L L LD+S + R L L L + GN F N +P T L+ L LDLS
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 168 NSLSGIIPAQLSGLRSLTALRLSHNAF 194
L + P + L SL L +SHN F
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMSHNNF 506
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 2/115 (1%)
Query: 105 SIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLD 164
S + EL LDLSR + L L+TL L GN + L LQ L
Sbjct: 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106
Query: 165 LSHNSLSGIIPAQLSGLRSLTALRLSHNAF-SGKIPS-LTGAWQLHTLDLDSNQL 217
+L+ + + L++L L ++HN S K+P + L LDL SN++
Sbjct: 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 18/132 (13%)
Query: 252 KSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGN---- 307
K+LDLS N S+ + P++ +D+S + IE +HL L + GN
Sbjct: 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90
Query: 308 LLRGHLPINLVSLRNLTSI--NLA--RNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWGNL 363
L G L SL+ L ++ NLA N GH+ + + L + HN +
Sbjct: 91 LALGAFS-GLSSLQKLVAVETNLASLENFPIGHL---------KTLKELNVAHNLIQSFK 140
Query: 364 PPEFSSSITRIR 375
PE+ S++T +
Sbjct: 141 LPEYFSNLTNLE 152
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 49/115 (42%), Gaps = 12/115 (10%)
Query: 81 SDNSTSRITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLY 140
+DN RI++ DG G L L L+L RN G P+ + L
Sbjct: 37 NDNELGRISS--------DGLF----GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ 84
Query: 141 LPGNFFTGNIPVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTALRLSHNAFS 195
L N L +L+TL+L N +S ++P L SLT+L L+ N F+
Sbjct: 85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%)
Query: 272 LPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLTSINLARN 331
LP +V +++ N+LT IE G +H+QEL + N ++ + L L ++NL N
Sbjct: 53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDN 112
Query: 332 QLSGHIPKVY 341
Q+S +P +
Sbjct: 113 QISCVMPGSF 122
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 58/115 (50%), Gaps = 10/115 (8%)
Query: 249 VNLKSLDLSSNRFTGAISHEVL-TLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGN 307
+NLK L L SN+ GA+ V +L Q+ +D+ N+LT + HL+EL + N
Sbjct: 64 INLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCN 122
Query: 308 LLRGHLPINLVSLRNLTSINLARNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWGN 362
L LP + L +LT + L +NQL IP +L S L H +L+GN
Sbjct: 123 KLT-ELPRGIERLTHLTHLALDQNQLKS-IPHGAFDRLSS------LTHAYLFGN 169
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 46/108 (42%), Gaps = 3/108 (2%)
Query: 88 ITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITD-LRKLTTLYLPGNFF 146
+ +YL S+ +LT+LT LDL N +P + D L L L++ N
Sbjct: 66 LKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKL 124
Query: 147 TGNIPVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTALRLSHNAF 194
T +P GI RL L L L N L I L SLT L N +
Sbjct: 125 T-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW 171
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 109/261 (41%), Gaps = 16/261 (6%)
Query: 86 SRITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNF 145
+R+ + L ++ +G L I + L L L+ N+F L LY+ GN
Sbjct: 277 TRVQELDLTAAHLNG-LPSGIEGMNSLKKLVLNANSFDQLCQINAASFPSLRDLYIKGNM 335
Query: 146 FTGNIPV-GITRLKKLQTLDLSHNSL--SGIIPAQLSGLRSLTALRLSHNAFSG-KIPSL 201
++ + +L+ LQ LDLSH+ + S QL LR L L LS+N G + +
Sbjct: 336 RKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLGLEDQAF 395
Query: 202 TGAWQLHTLDLDSNQLYGNLPKFPTS----LRTXXXXXXXXXXXXXXXXXXV-NLKSLDL 256
QL LD+ L+ P P LR + +L+ L+L
Sbjct: 396 KECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNL 455
Query: 257 SSNRFT-GAISHEVLTLPQVVSIDV---SVNRLTAIEMTTLSGDTHLQELDVQGNLLRGH 312
N F G+IS L L V S+++ S L +I+ G ++ LD+ N L G
Sbjct: 456 QGNSFQDGSISKTNL-LQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGD 514
Query: 313 LPINLVSLRNLTSINLARNQL 333
L L+ L +N+A N +
Sbjct: 515 SMDALSHLKGLY-LNMASNNI 534
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 49/121 (40%), Gaps = 6/121 (4%)
Query: 104 PSIGN-----LTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLK 158
P+I N L L LDL+R DT +L T+ L GN +T K
Sbjct: 45 PTIQNTTFSRLINLIFLDLTRCQINWVHEDTFQSHHQLNTIVLTGNPLIFMAETSLTGPK 104
Query: 159 KLQTLDLSHNSLSGIIPAQLSGLRSLTALRLSHNAFSG-KIPSLTGAWQLHTLDLDSNQL 217
L+ L L+ +S + + L +L +L L N S +P L LD +N +
Sbjct: 105 FLKHLFLTQTGISNLEFIPVHNLENLESLHLGSNHISSINLPENFPTQNLKVLDFQNNAI 164
Query: 218 Y 218
+
Sbjct: 165 H 165
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 109/249 (43%), Gaps = 43/249 (17%)
Query: 109 LTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHN 168
L LT ++ S N P + +L KL + + N P+ L L L L +N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLA--NLTNLTGLTLFNN 117
Query: 169 SLSGIIPAQLSGLRSLTALRLSHNAFSGKIPSLTGAWQLHTLDLDSNQLYGNLPKFPTSL 228
++ I P L L +L L LS N S I +L+G L L+ +GN T L
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTIS-DISALSGLTSLQQLN------FGN---QVTDL 165
Query: 229 RTXXXXXXXXXXXXXXXXXXVNLKSLDLSSNRFTG-AISHEVLTLPQVVSIDVSVNRLTA 287
+ L+ LD+SSN+ + ++ ++ L +++ + ++ +T
Sbjct: 166 KPLANLTT--------------LERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP 211
Query: 288 IEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLTSINLARNQLSGHIP-----KVYG 342
+ + T +L EL + GN L+ L SL NLT ++LA NQ+S P K+
Sbjct: 212 LGILT-----NLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAPLSGLTKLTE 264
Query: 343 AKLGSSWRS 351
KLG++ S
Sbjct: 265 LKLGANQIS 273
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 109/249 (43%), Gaps = 43/249 (17%)
Query: 109 LTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHN 168
L LT ++ S N P + +L KL + + N P+ L L L L +N
Sbjct: 62 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLA--NLTNLTGLTLFNN 117
Query: 169 SLSGIIPAQLSGLRSLTALRLSHNAFSGKIPSLTGAWQLHTLDLDSNQLYGNLPKFPTSL 228
++ I P L L +L L LS N S I +L+G L L+ +GN T L
Sbjct: 118 QITDIDP--LKNLTNLNRLELSSNTIS-DISALSGLTSLQQLN------FGN---QVTDL 165
Query: 229 RTXXXXXXXXXXXXXXXXXXVNLKSLDLSSNRFTG-AISHEVLTLPQVVSIDVSVNRLTA 287
+ L+ LD+SSN+ + ++ ++ L +++ + ++ +T
Sbjct: 166 KPLANLTT--------------LERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP 211
Query: 288 IEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLTSINLARNQLSGHIP-----KVYG 342
+ + T +L EL + GN L+ L SL NLT ++LA NQ+S P K+
Sbjct: 212 LGILT-----NLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAPLSGLTKLTE 264
Query: 343 AKLGSSWRS 351
KLG++ S
Sbjct: 265 LKLGANQIS 273
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 45/109 (41%), Gaps = 9/109 (8%)
Query: 109 LTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGN-IPVGITRLKKLQTLDLSH 167
L L LD+S + R L L L + GN F N +P T L+ L LDLS
Sbjct: 420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479
Query: 168 NSLSGIIPAQLSGLRSLTALRLSHNAFSG-------KIPSLTGAWQLHT 209
L + P + L SL L ++ N ++ SL W LHT
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIW-LHT 527
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 2/115 (1%)
Query: 105 SIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLD 164
S + EL LDLSR + L L+TL L GN + L LQ L
Sbjct: 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106
Query: 165 LSHNSLSGIIPAQLSGLRSLTALRLSHNAF-SGKIPS-LTGAWQLHTLDLDSNQL 217
+L+ + + L++L L ++HN S K+P + L LDL SN++
Sbjct: 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 18/132 (13%)
Query: 252 KSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGN---- 307
K+LDLS N S+ + P++ +D+S + IE +HL L + GN
Sbjct: 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90
Query: 308 LLRGHLPINLVSLRNLTSI--NLA--RNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWGNL 363
L G L SL+ L ++ NLA N GH+ + + L + HN +
Sbjct: 91 LALGAFS-GLSSLQKLVAVETNLASLENFPIGHLKTL---------KELNVAHNLIQSFK 140
Query: 364 PPEFSSSITRIR 375
PE+ S++T +
Sbjct: 141 LPEYFSNLTNLE 152
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 55/118 (46%), Gaps = 4/118 (3%)
Query: 86 SRITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITD-LRKLTTLYLPGN 144
S T + L+S+ LT+LT L LS+N + +PD + D L KLT LYL N
Sbjct: 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS-LPDGVFDKLTKLTILYLHEN 86
Query: 145 FFTGNIPVGI-TRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTALRLSHNAFSGKIPSL 201
++P G+ +L +L+ L L N L + L SL + L N + P +
Sbjct: 87 KLQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 143
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 73/181 (40%), Gaps = 37/181 (20%)
Query: 136 LTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHNSLSGIIPAQL--SGLRSLTALRLSHNA 193
T L N FT ++ G + LK+LQTL L N L L + SL L +S N+
Sbjct: 355 FTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNS 414
Query: 194 FSGKIPSLTGAW--QLHTLDLDSNQLYGNL-----PKFPTSLRTXXXXXXXXXXXXXXXX 246
+ T AW + L+L SN L G++ PK
Sbjct: 415 LNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPK----------------------- 451
Query: 247 XXVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQG 306
+K LDL +NR +I +V L + ++V+ N+L ++ T LQ + +
Sbjct: 452 ----VKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHD 506
Query: 307 N 307
N
Sbjct: 507 N 507
Score = 28.1 bits (61), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 40/108 (37%), Gaps = 27/108 (25%)
Query: 87 RITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFF 146
R A+ L + P I L+EL L LS N R L + F
Sbjct: 53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRS----------------LDFHVF 96
Query: 147 TGNIPVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTALRLSHNAF 194
N + L+ LD+SHN L I ++ LR L LS N F
Sbjct: 97 LFN--------QDLEYLDVSHNRLQNISCCPMASLRHLD---LSFNDF 133
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 108/249 (43%), Gaps = 43/249 (17%)
Query: 109 LTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHN 168
L LT ++ S N P + +L KL + + N P+ L L L L +N
Sbjct: 66 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLA--NLTNLTGLTLFNN 121
Query: 169 SLSGIIPAQLSGLRSLTALRLSHNAFSGKIPSLTGAWQLHTLDLDSNQLYGNLPKFPTSL 228
++ I P L L +L L LS N S I +L+G L L NQ+ T L
Sbjct: 122 QITDIDP--LKNLTNLNRLELSSNTIS-DISALSGLTSLQQLSF-GNQV--------TDL 169
Query: 229 RTXXXXXXXXXXXXXXXXXXVNLKSLDLSSNRFTG-AISHEVLTLPQVVSIDVSVNRLTA 287
+ L+ LD+SSN+ + ++ ++ L +++ + ++ +T
Sbjct: 170 KPLANLTT--------------LERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP 215
Query: 288 IEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLTSINLARNQLSGHIP-----KVYG 342
+ + T +L EL + GN L+ L SL NLT ++LA NQ+S P K+
Sbjct: 216 LGILT-----NLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAPLSGLTKLTE 268
Query: 343 AKLGSSWRS 351
KLG++ S
Sbjct: 269 LKLGANQIS 277
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 67/249 (26%), Positives = 108/249 (43%), Gaps = 43/249 (17%)
Query: 109 LTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHN 168
L LT ++ S N P + +L KL + + N P+ L L L L +N
Sbjct: 67 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLA--NLTNLTGLTLFNN 122
Query: 169 SLSGIIPAQLSGLRSLTALRLSHNAFSGKIPSLTGAWQLHTLDLDSNQLYGNLPKFPTSL 228
++ I P L L +L L LS N S I +L+G L L NQ+ T L
Sbjct: 123 QITDIDP--LKNLTNLNRLELSSNTIS-DISALSGLTSLQQLSF-GNQV--------TDL 170
Query: 229 RTXXXXXXXXXXXXXXXXXXVNLKSLDLSSNRFTG-AISHEVLTLPQVVSIDVSVNRLTA 287
+ L+ LD+SSN+ + ++ ++ L +++ + ++ +T
Sbjct: 171 KPLANLTT--------------LERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP 216
Query: 288 IEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLTSINLARNQLSGHIP-----KVYG 342
+ + T +L EL + GN L+ L SL NLT ++LA NQ+S P K+
Sbjct: 217 LGILT-----NLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAPLSGLTKLTE 269
Query: 343 AKLGSSWRS 351
KLG++ S
Sbjct: 270 LKLGANQIS 278
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 126 IPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLT 185
+P+TIT++R L N P + KKL+ +DLS+N +S + P GLRSL
Sbjct: 30 LPETITEIR------LEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLN 83
Query: 186 ALRLSHNAFS 195
+L L N +
Sbjct: 84 SLVLYGNKIT 93
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 49/143 (34%), Gaps = 25/143 (17%)
Query: 76 LCSIPSDNSTSRITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRK 135
L IP+ N IT I L+ + + +L +DLS N PD LR
Sbjct: 23 LTEIPT-NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRS 81
Query: 136 LTTLYLPGN--------FFTGNIPV----------------GITRLKKLQTLDLSHNSLS 171
L +L L GN F G + L L L L N L
Sbjct: 82 LNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ 141
Query: 172 GIIPAQLSGLRSLTALRLSHNAF 194
I S LR++ + L+ N F
Sbjct: 142 TIAKGTFSPLRAIQTMHLAQNPF 164
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 126 IPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLT 185
+P+TIT++R L N P + KKL+ +DLS+N +S + P GLRSL
Sbjct: 30 LPETITEIR------LEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLN 83
Query: 186 ALRLSHNAFS 195
+L L N +
Sbjct: 84 SLVLYGNKIT 93
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 49/143 (34%), Gaps = 25/143 (17%)
Query: 76 LCSIPSDNSTSRITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRK 135
L IP+ N IT I L+ + + +L +DLS N PD LR
Sbjct: 23 LTEIPT-NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRS 81
Query: 136 LTTLYLPGN--------FFTGNIPV----------------GITRLKKLQTLDLSHNSLS 171
L +L L GN F G + L L L L N L
Sbjct: 82 LNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKLQ 141
Query: 172 GIIPAQLSGLRSLTALRLSHNAF 194
I S LR++ + L+ N F
Sbjct: 142 TIAKGTFSPLRAIQTMHLAQNPF 164
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 65/259 (25%), Positives = 100/259 (38%), Gaps = 41/259 (15%)
Query: 109 LTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHN 168
L+ LT LD+S N + DL L +L + N + L L+ L L
Sbjct: 103 LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC 162
Query: 169 SLSGIIPAQLSGLRSLTALRLSH-NAFSGKIPSLTGAWQLHTLD------LDS---NQLY 218
+L+ I LS L L LRL H N + + S ++L L+ LD+ N LY
Sbjct: 163 NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY 222
Query: 219 GNLPKFPTSLRTXXXXXXXXXXXXXXXXXXVNLKSLDLSSNRFTGAISHEVLTLPQVVSI 278
G +NL SL ++ T V L + +
Sbjct: 223 G-----------------------------LNLTSLSITHCNLTAVPYLAVRHLVYLRFL 253
Query: 279 DVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLTSINLARNQLSGHIP 338
++S N ++ IE + L LQE+ + G L P L L +N++ NQL+
Sbjct: 254 NLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEE 313
Query: 339 KVYGAKLGSSWRSLFLDHN 357
V+ + + +L LD N
Sbjct: 314 SVFHSV--GNLETLILDSN 330
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Query: 254 LDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHL 313
LDL NR E + P + ++++ N ++A+E + +L+ L ++ N L+ +
Sbjct: 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LI 95
Query: 314 PINLVS-LRNLTSINLARNQL 333
P+ + + L NLT ++++ N++
Sbjct: 96 PLGVFTGLSNLTKLDISENKI 116
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 29/57 (50%)
Query: 278 IDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLTSINLARNQLS 334
+D+ NR+ + + HL+EL++ N++ P +L NL ++ L N+L
Sbjct: 37 LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 51/115 (44%), Gaps = 13/115 (11%)
Query: 78 SIPSDNSTSRITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLT 137
SI D+ + DS YD L ++ +L+ L ++S N F+ LT
Sbjct: 202 SIDEDDDIENRMVMPKDSK-YDDQLWHAL-DLSNLQIFNISANIFKYDF---------LT 250
Query: 138 TLYLPGNFFTGNIPVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTALRLSHN 192
LYL GN T +P I L L+ LDLSHN L+ +PA+L L N
Sbjct: 251 RLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDN 303
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Query: 149 NIPVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTALRLSHNAFSGKIPSLTGAWQLH 208
NI I + L L L+ NSL+ + PA++ L +L L LSHN + L +QL
Sbjct: 238 NISANIFKYDFLTRLYLNGNSLTEL-PAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLK 296
Query: 209 TLDLDSNQL------YGNL 221
N + +GNL
Sbjct: 297 YFYFFDNMVTTLPWEFGNL 315
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 4/106 (3%)
Query: 102 LTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQ 161
LTP +G L L++S N+F P + L L L++ + + L L
Sbjct: 214 LTPLVG----LEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLV 269
Query: 162 TLDLSHNSLSGIIPAQLSGLRSLTALRLSHNAFSGKIPSLTGAWQL 207
L+L+HN+LS + + LR L L L HN ++ L AW L
Sbjct: 270 ELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDILWLAWWL 315
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 54/112 (48%), Gaps = 7/112 (6%)
Query: 110 TELTTLD-LSRNNFRG--PIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLS 166
TE T LD + R + +G +P I R +T LYL GN FT +P ++ K L +DLS
Sbjct: 6 TECTCLDTVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTL-VPKELSNYKHLTLIDLS 62
Query: 167 HNSLSGIIPAQLSGLRSLTALRLSHNAFSGKIP-SLTGAWQLHTLDLDSNQL 217
+N +S + S + L L LS+N P + G L L L N +
Sbjct: 63 NNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDI 114
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 111 ELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHNSL 170
++T L L N F +P +++ + LT + L N + + + +L TL LS+N L
Sbjct: 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
Query: 171 SGIIPAQLSGLRSLTALRLSHNAFS 195
I P GL+SL L L N S
Sbjct: 91 RCIPPRTFDGLKSLRLLSLHGNDIS 115
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 254 LDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGN 307
+DLS+NR + + + Q++++ +S NRL I T G L+ L + GN
Sbjct: 59 IDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGN 112
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 6/116 (5%)
Query: 250 NLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLL 309
++ L L N+FT + E+ + ID+S NR++ + + S T L L + N L
Sbjct: 32 DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
Query: 310 RGHLPINLVSLRNLTSINLARNQLSGHIPKVYG-----AKLGSSWRSLFLDHNFLW 360
R P L++L ++L N +S + + L L+ D N W
Sbjct: 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQW 146
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 52/110 (47%), Gaps = 8/110 (7%)
Query: 109 LTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVG---ITRLKKLQTLDL 165
L+ L L LS N F + ++ LT L + GN T + +G + L+ L+ LDL
Sbjct: 300 LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN--TKRLELGTGCLENLENLRELDL 357
Query: 166 SHNSL--SGIIPAQLSGLRSLTALRLSHNA-FSGKIPSLTGAWQLHTLDL 212
SH+ + S QL L L +L LS+N S K + QL LDL
Sbjct: 358 SHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDL 407
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 49/121 (40%), Gaps = 6/121 (4%)
Query: 104 PSIGN-----LTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLK 158
P+I N L LT LDL+R DT +L TL L N ++ K
Sbjct: 46 PTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPK 105
Query: 159 KLQTLDLSHNSLSGIIPAQLSGLRSLTALRLSHNAFSG-KIPSLTGAWQLHTLDLDSNQL 217
L+ L +S I L ++L +L L N S K+P +L LD +N +
Sbjct: 106 ALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAI 165
Query: 218 Y 218
+
Sbjct: 166 H 166
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 9/76 (11%)
Query: 151 PVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTALRLSHNAFS---------GKIPSL 201
P L+ L LDLS+N+++ I L GL +L L HN + G + L
Sbjct: 473 PSPFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLARLWKRANPGGPVNFL 532
Query: 202 TGAWQLHTLDLDSNQL 217
G LH L+L+SN L
Sbjct: 533 KGLSHLHILNLESNGL 548
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 85/216 (39%), Gaps = 27/216 (12%)
Query: 126 IPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLT 185
IPD + +T L L N P TR +L LD NS+S + P L L
Sbjct: 19 IPDDLPS--NITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLK 76
Query: 186 ALRLSHNAFSGKIPSLTGAW--QLHTLDLDSNQLYGNLPKFPTSLRTXXXXXXXXXXXXX 243
L L HN S +I T + L LDL SN ++
Sbjct: 77 VLNLQHNELS-QISDQTFVFCTNLTELDLMSNSIHK--------------------IKSN 115
Query: 244 XXXXXVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLS--GDTHLQE 301
NL LDLS N + + L + + ++ N++ A+ L G++ L++
Sbjct: 116 PFKNQKNLIKLDLSHNGLSSTKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRK 175
Query: 302 LDVQGNLLRGHLPINLVSLRNLTSINLARNQLSGHI 337
LD+ N L+ P ++ L ++ L QL+ H+
Sbjct: 176 LDLSSNPLKEFSPGCFQTIGKLFALLLNNAQLNPHL 211
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 59/156 (37%), Gaps = 15/156 (9%)
Query: 42 RSIDPNTIPRSSFLDSWDFKLDPC---ESSGGQFLGILCSIPSDNSTSRITAIYLDSSGY 98
RS+DP T L + LD C E G F G+ + + +YL +
Sbjct: 93 RSVDPATFHGLGRLHT--LHLDRCGLQELGPGLFRGL----------AALQYLYLQDNAL 140
Query: 99 DGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLK 158
+ +L LT L L N L L L L N P L
Sbjct: 141 QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 200
Query: 159 KLQTLDLSHNSLSGIIPAQLSGLRSLTALRLSHNAF 194
+L TL L N+LS + L+ LR+L LRL+ N +
Sbjct: 201 RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 236
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Query: 110 TELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGI-TRLKKLQTLDLSHN 168
T+ L L+ N P L L LY N T IP G+ +L +L LDL+ N
Sbjct: 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA-IPTGVFDKLTQLTQLDLNDN 91
Query: 169 SLSGIIPAQLSGLRSLTALRLSHNAF 194
L I L+SLT + L +N +
Sbjct: 92 HLKSIPRGAFDNLKSLTHIYLYNNPW 117
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%)
Query: 88 ITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGN 144
+ +Y +S+ T LT+LT LDL+ N+ + +L+ LT +YL N
Sbjct: 59 LQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNN 115
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 35.4 bits (80), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 59/156 (37%), Gaps = 15/156 (9%)
Query: 42 RSIDPNTIPRSSFLDSWDFKLDPC---ESSGGQFLGILCSIPSDNSTSRITAIYLDSSGY 98
RS+DP T L + LD C E G F G+ + + +YL +
Sbjct: 94 RSVDPATFHGLGRLHT--LHLDRCGLQELGPGLFRGL----------AALQYLYLQDNAL 141
Query: 99 DGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLK 158
+ +L LT L L N L L L L N P L
Sbjct: 142 QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 201
Query: 159 KLQTLDLSHNSLSGIIPAQLSGLRSLTALRLSHNAF 194
+L TL L N+LS + L+ LR+L LRL+ N +
Sbjct: 202 RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 35.0 bits (79), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 102/261 (39%), Gaps = 43/261 (16%)
Query: 149 NIPVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTALRLSHNAFSGKI--PSLTGAWQ 206
N G+ R ++ LDLSH + + L+ L L L++N + KI + G
Sbjct: 258 NTFAGLAR-SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN-KIADEAFYGLDN 315
Query: 207 LHTLDLDSN---QLY-GNLPKFPTSLRTXXXXXXXXXXXXXXXXXXVNLKSLDLSSNRFT 262
L L+L N +LY N P L++LDL N T
Sbjct: 316 LQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375
Query: 263 GAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSG------DTHLQELDVQGNLLR-GHLPI 315
+ +P + I +S N+L + L+ + L+ LD+ LLR HL I
Sbjct: 376 -----TIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQI 430
Query: 316 NLVSLRNLTSINLARNQLSGHIPKVYGAKLGS-----SWRS---------------LFLD 355
+++ +S + +Q P + LG +W + L+L+
Sbjct: 431 LILNQNRFSSC--SGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLN 488
Query: 356 HNFLWGNLPPEFSSSITRIRG 376
HN+L +LPP S +T +RG
Sbjct: 489 HNYL-NSLPPGVFSHLTALRG 508
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 34.7 bits (78), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 55/119 (46%), Gaps = 11/119 (9%)
Query: 105 SIGNLTELTTLDLSRNNFRGPIPDTITD-LRKLTTLYLPGNFFTGNIPVGI-TRLKKLQT 162
++ LT LT L L+ N + +P+ + D L L L L N +P G+ +L L
Sbjct: 80 ALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTY 137
Query: 163 LDLSHNSLSGIIPAQLSGLRSLTALRLSHNAF----SGKIPSLTGAWQLHTLDLDSNQL 217
L+L+HN L + L +LT L LS+N G LT QL L L NQL
Sbjct: 138 LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLT---QLKDLRLYQNQL 193
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/113 (34%), Positives = 52/113 (46%), Gaps = 11/113 (9%)
Query: 111 ELTTLDLSRNNFRGPIPDTITD-LRKLTTLYLPGNFFTGNIPVGI-TRLKKLQTLDLSHN 168
+ T LDL N+ + +P+ + D L LT LYL GN ++P G+ +L L L+LS N
Sbjct: 29 QTTYLDLETNSLKS-LPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTN 86
Query: 169 SLSGIIPAQLSGLRSLTALRLSHNAFS----GKIPSLTGAWQLHTLDLDSNQL 217
L + L L L L+ N G LT QL L L NQL
Sbjct: 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLT---QLKDLRLYQNQL 136
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 2/115 (1%)
Query: 105 SIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLD 164
S + EL LDLSR + L L+TL L GN + L LQ L
Sbjct: 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106
Query: 165 LSHNSLSGIIPAQLSGLRSLTALRLSHNAF-SGKIPS-LTGAWQLHTLDLDSNQL 217
+L+ + + L++L L ++HN S K+P + L LDL SN++
Sbjct: 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 18/132 (13%)
Query: 252 KSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRG 311
K+LDLS N S+ + P++ +D+S + IE +HL L + GN ++
Sbjct: 31 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 90
Query: 312 HLPI----NLVSLRNLTSI--NLA--RNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWGNL 363
L + L SL+ L ++ NLA N GH+ + + L + HN +
Sbjct: 91 -LALGAFSGLSSLQKLVAVETNLASLENFPIGHL---------KTLKELNVAHNLIQSFK 140
Query: 364 PPEFSSSITRIR 375
PE+ S++T +
Sbjct: 141 LPEYFSNLTNLE 152
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 43/104 (41%)
Query: 104 PSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTL 163
P++ L L L+LS N P + L L L+L LK L+ L
Sbjct: 172 PNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEEL 231
Query: 164 DLSHNSLSGIIPAQLSGLRSLTALRLSHNAFSGKIPSLTGAWQL 207
+LSHN+L + + L L + L+HN + L +W L
Sbjct: 232 NLSHNNLMSLPHDLFTPLHRLERVHLNHNPWHCNCDVLWLSWWL 275
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 44/114 (38%), Gaps = 2/114 (1%)
Query: 105 SIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLD 164
+ L L TL+L N L KL L+L N R+ L+ LD
Sbjct: 78 AFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLD 137
Query: 165 LSH-NSLSGIIPAQLSGLRSLTALRLSHNAFSGKIPSLTGAWQLHTLDLDSNQL 217
L L I A GL +L L L IP+LT +L L+L N+L
Sbjct: 138 LGELKRLEYISEAAFEGLVNLRYLNLGMCNLKD-IPNLTALVRLEELELSGNRL 190
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 2/115 (1%)
Query: 105 SIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLD 164
S + EL LDLSR + L L+TL L GN + L LQ L
Sbjct: 48 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 107
Query: 165 LSHNSLSGIIPAQLSGLRSLTALRLSHNAF-SGKIPS-LTGAWQLHTLDLDSNQL 217
+L+ + + L++L L ++HN S K+P + L LDL SN++
Sbjct: 108 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 18/132 (13%)
Query: 252 KSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRG 311
K+LDLS N S+ + P++ +D+S + IE +HL L + GN ++
Sbjct: 32 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 91
Query: 312 HLPI----NLVSLRNLTSI--NLA--RNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWGNL 363
L + L SL+ L ++ NLA N GH+ + + L + HN +
Sbjct: 92 -LALGAFSGLSSLQKLVAVETNLASLENFPIGHL---------KTLKELNVAHNLIQSFK 141
Query: 364 PPEFSSSITRIR 375
PE+ S++T +
Sbjct: 142 LPEYFSNLTNLE 153
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 2/115 (1%)
Query: 105 SIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLD 164
S + EL LDLSR + L L+TL L GN + L LQ L
Sbjct: 49 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 108
Query: 165 LSHNSLSGIIPAQLSGLRSLTALRLSHNAF-SGKIPS-LTGAWQLHTLDLDSNQL 217
+L+ + + L++L L ++HN S K+P + L LDL SN++
Sbjct: 109 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 18/132 (13%)
Query: 252 KSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRG 311
K+LDLS N S+ + P++ +D+S + IE +HL L + GN ++
Sbjct: 33 KNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 92
Query: 312 HLPI----NLVSLRNLTSI--NLA--RNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWGNL 363
L + L SL+ L ++ NLA N GH+ + + L + HN +
Sbjct: 93 -LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL---------KELNVAHNLIQSFK 142
Query: 364 PPEFSSSITRIR 375
PE+ S++T +
Sbjct: 143 LPEYFSNLTNLE 154
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 2/115 (1%)
Query: 105 SIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLD 164
S + EL LDLSR + L L+TL L GN + L LQ L
Sbjct: 48 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 107
Query: 165 LSHNSLSGIIPAQLSGLRSLTALRLSHNAF-SGKIPS-LTGAWQLHTLDLDSNQL 217
+L+ + + L++L L ++HN S K+P + L LDL SN++
Sbjct: 108 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 18/132 (13%)
Query: 252 KSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRG 311
K+LDLS N S+ + P++ +D+S + IE +HL L + GN ++
Sbjct: 32 KNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 91
Query: 312 HLPI----NLVSLRNLTSI--NLA--RNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWGNL 363
L + L SL+ L ++ NLA N GH+ + + L + HN +
Sbjct: 92 -LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL---------KELNVAHNLIQSFK 141
Query: 364 PPEFSSSITRIR 375
PE+ S++T +
Sbjct: 142 LPEYFSNLTNLE 153
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 48/112 (42%), Gaps = 9/112 (8%)
Query: 109 LTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGI-TRLKKLQTLDLSH 167
L L L L RN + P L KLT L L N ++P G+ +L L+ L L +
Sbjct: 108 LVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYN 166
Query: 168 NSLSGIIPAQLSGLRSLTALRLSHNAFSGKIPSLTGAW----QLHTLDLDSN 215
N L + L L L+L +N ++P GA+ +L L L N
Sbjct: 167 NQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPE--GAFDSLEKLKMLQLQEN 215
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 2/93 (2%)
Query: 252 KSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRG 311
K LDL SN+ + S L ++ + ++ N+L + +L+ L V N L+
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA 99
Query: 312 HLPINLV-SLRNLTSINLARNQLSGHIPKVYGA 343
LPI + L NL + L RNQL P+V+ +
Sbjct: 100 -LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS 131
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 48/111 (43%), Gaps = 4/111 (3%)
Query: 115 LDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITR-LKKLQTLDLSHNSLSGI 173
LDL N L KL LYL N +P GI + LK L+TL ++ N L +
Sbjct: 42 LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQAL 100
Query: 174 IPAQLSGLRSLTALRLSHNAFSGKIPSLTGAW-QLHTLDLDSNQLYGNLPK 223
L +L LRL N P + + +L L L N+L +LPK
Sbjct: 101 PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPK 150
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 50/115 (43%), Gaps = 2/115 (1%)
Query: 105 SIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLD 164
S + EL LDLSR + L L+TL L GN + L LQ L
Sbjct: 49 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 108
Query: 165 LSHNSLSGIIPAQLSGLRSLTALRLSHNAF-SGKIPS-LTGAWQLHTLDLDSNQL 217
+L+ + + L++L L ++HN S K+P + L LDL SN++
Sbjct: 109 ALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 18/132 (13%)
Query: 252 KSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRG 311
K+LDLS N S+ + P++ +D+S + IE +HL L + GN ++
Sbjct: 33 KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 92
Query: 312 HLPI----NLVSLRNLTSI--NLA--RNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWGNL 363
L + L SL+ L ++ NLA N GH+ + + L + HN +
Sbjct: 93 -LALGAFSGLSSLQKLVALETNLASLENFPIGHL---------KTLKELNVAHNLIQSFK 142
Query: 364 PPEFSSSITRIR 375
PE+ S++T +
Sbjct: 143 LPEYFSNLTNLE 154
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 54/138 (39%), Gaps = 26/138 (18%)
Query: 105 SIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVG-ITRLKKLQTL 163
S +L L L LSRN+ R L L TL L N T IP G L KL+ L
Sbjct: 83 SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKEL 141
Query: 164 DLSHNSLSGIIPAQLSGLRSLTALRL---------SHNAFSG---------------KIP 199
L +N + I + + SL L L S AF G +IP
Sbjct: 142 WLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP 201
Query: 200 SLTGAWQLHTLDLDSNQL 217
+LT +L LDL N L
Sbjct: 202 NLTPLIKLDELDLSGNHL 219
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 47/107 (43%)
Query: 104 PSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTL 163
P++ L +L LDLS N+ P + L L L++ + L+ L +
Sbjct: 201 PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEI 260
Query: 164 DLSHNSLSGIIPAQLSGLRSLTALRLSHNAFSGKIPSLTGAWQLHTL 210
+L+HN+L+ + + L L + L HN ++ L +W + +
Sbjct: 261 NLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDILWLSWWIKDM 307
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 62/165 (37%), Gaps = 26/165 (15%)
Query: 52 SSFLDSWDFKLDPCESSGGQFLGILCSIPSDNSTSRITAIYLDSSGYDGFLTPSIGNLTE 111
++F D +F E+SG + D S S+I A+ L + T+
Sbjct: 259 TNFKDPDNFTFKGLEASGVK--------TCDLSKSKIFAL----------LKSVFSHFTD 300
Query: 112 LTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHNSLS 171
L L L++N + L L L L NF L KL+ LDLS+N +
Sbjct: 301 LEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR 360
Query: 172 GIIPAQLSGLRSLTALRLSHNAFSG-------KIPSLTGAWQLHT 209
+ GL +L L L N ++ SL W LHT
Sbjct: 361 ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIW-LHT 404
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 83/223 (37%), Gaps = 54/223 (24%)
Query: 110 TELTTLDLSRNNFRGPIPDTITDL---RKLTTLYLPGNFFTGNIPVGITRLKK------- 159
T +TTLDLS N F+ + D K+ +L L ++ G+ G T K
Sbjct: 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGS-SFGHTNFKDPDNFTFK 270
Query: 160 ------LQTLDLSHNSLSGIIPAQLSGLRSLTALRLSHNAFSGKIP--SLTGAWQLHTLD 211
++T DLS + + ++ + S L L L+ N + KI + G L L+
Sbjct: 271 GLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLN 329
Query: 212 LDSN-------QLYGNLPKFPTSLRTXXXXXXXXXXXXXXXXXXVNLKSLDLSSNRFTGA 264
L N +++ NL K L+ LDLS N
Sbjct: 330 LSQNFLGSIDSRMFENLDK---------------------------LEVLDLSYNHIRAL 362
Query: 265 ISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGN 307
L LP + + + N+L ++ T LQ++ + N
Sbjct: 363 GDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 405
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 43/104 (41%)
Query: 104 PSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTL 163
P++ L L L+LS N P + L L L+L LK L+ L
Sbjct: 172 PNLTALVRLEELELSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEEL 231
Query: 164 DLSHNSLSGIIPAQLSGLRSLTALRLSHNAFSGKIPSLTGAWQL 207
+LSHN+L + + L L + L+HN + L +W L
Sbjct: 232 NLSHNNLMSLPHDLFTPLHRLERVHLNHNPWHCNCDVLWLSWWL 275
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 44/114 (38%), Gaps = 2/114 (1%)
Query: 105 SIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLD 164
+ L L TL+L N L KL L+L N R+ L+ LD
Sbjct: 78 AFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLD 137
Query: 165 LSH-NSLSGIIPAQLSGLRSLTALRLSHNAFSGKIPSLTGAWQLHTLDLDSNQL 217
L L I A GL +L L L IP+LT +L L+L N+L
Sbjct: 138 LGELKRLEYISEAAFEGLVNLRYLNLGMCNLK-DIPNLTALVRLEELELSGNRL 190
>pdb|3BZ5|A Chain A, Functional Domain Of Inlj From Listeria Monocytogenes
Includes A Cysteine Ladder
Length = 457
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 78/282 (27%), Positives = 113/282 (40%), Gaps = 60/282 (21%)
Query: 60 FKLDPCESSGGQFLGILCSIPSDNSTSRITAIYLDSSGYDGF--LTPSIGNLTELTTLDL 117
F++ ++ + L L S+ NS+ IT D +G + LT I +TTLDL
Sbjct: 28 FEMQATDTISEEQLATLTSLDCHNSS--IT----DMTGIEKLTGLTKLICTSNNITTLDL 81
Query: 118 SRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHNSLSGIIPAQ 177
S+N LT L N T + +T L KL L+ N L+ + +Q
Sbjct: 82 SQN-------------TNLTYLACDSNKLTN---LDVTPLTKLTYLNCDTNKLTKLDVSQ 125
Query: 178 ------LSGLR-SLTALRLSHNA--------FSGKIPSL--TGAWQLHTLDLDSNQLYGN 220
L+ R +LT + +SHN + KI L T QL TLD N++
Sbjct: 126 NPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKI--- 182
Query: 221 LPKFPTSLRTXXXXXXXXXXXXXXXXXXVNLKS------LDLSSNRFTGAISHEVLTLPQ 274
T L ++L LD SSN+ T +V L Q
Sbjct: 183 -----TELDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEI---DVTPLTQ 234
Query: 275 VVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPIN 316
+ D SVN LT ++++TLS T L +Q +LL L N
Sbjct: 235 LTYFDCSVNPLTELDVSTLSKLTTLHC--IQTDLLEIDLTHN 274
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 5/112 (4%)
Query: 115 LDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFT--GNIPVGITRLKKLQTLDLSHNSLS- 171
LD S N + + L +L TL L N I T++K LQ LD+S NS+S
Sbjct: 329 LDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSY 388
Query: 172 GIIPAQLSGLRSLTALRLSHNAFSGKIPSLTGAWQLHTLDLDSNQLYGNLPK 223
S +SL +L +S N + I ++ LDL SN++ ++PK
Sbjct: 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPP-RIKVLDLHSNKI-KSIPK 438
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 48/125 (38%), Gaps = 5/125 (4%)
Query: 109 LTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGI-TRLKKLQTLDLSH 167
L +L LD+S N + L L TL + GN F N + L LDLS
Sbjct: 418 LEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSK 477
Query: 168 NSLSGIIPAQLSGLRSLTALRLSHNAFSGKIPS-LTGAWQLHTLDLDSNQL---YGNLPK 223
L I L L L +SHN S + L TLD N++ G L
Sbjct: 478 CQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQH 537
Query: 224 FPTSL 228
FP SL
Sbjct: 538 FPKSL 542
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 48/125 (38%), Gaps = 5/125 (4%)
Query: 109 LTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGI-TRLKKLQTLDLSH 167
L +L LD+S N + L L TL + GN F N + L LDLS
Sbjct: 423 LEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSK 482
Query: 168 NSLSGIIPAQLSGLRSLTALRLSHNAFSGKIPS-LTGAWQLHTLDLDSNQL---YGNLPK 223
L I L L L +SHN S + L TLD N++ G L
Sbjct: 483 CQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQH 542
Query: 224 FPTSL 228
FP SL
Sbjct: 543 FPKSL 547
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 86/189 (45%), Gaps = 31/189 (16%)
Query: 150 IPVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTALRLSHNAFSG-KIPSLTGAWQLH 208
IP G+T + +++LDLS+N ++ I + L +L AL L+ N + + S + L
Sbjct: 46 IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103
Query: 209 TLDLDSNQLYGNLPKFPTSLRTXXXXXXXXXXXXXXXXXXVNLKSLDLSSNRF-----TG 263
LDL N L + L + L L+L N + T
Sbjct: 104 HLDLSYNYLSNLSSSWFKPLSS--------------------LTFLNLLGNPYKTLGETS 143
Query: 264 AISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNL 323
SH LT Q++ + +++ T I+ +G T L+EL++ + L+ + P +L S++N+
Sbjct: 144 LFSH--LTKLQILRVG-NMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNV 200
Query: 324 TSINLARNQ 332
+ + L Q
Sbjct: 201 SHLILHMKQ 209
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 6/127 (4%)
Query: 73 LGILCSIPSDNSTSRITAIYLDSSGY----DGFLTPSIGNLTE-LTTLDLSRNNFRGPIP 127
LG++ S+ + S+++ ++ D +G G L LTE + +LDLS N
Sbjct: 11 LGVIISLSKEESSNQ-ASLSCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISN 69
Query: 128 DTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTAL 187
+ L L L N + L L+ LDLS+N LS + + L SLT L
Sbjct: 70 SDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFL 129
Query: 188 RLSHNAF 194
L N +
Sbjct: 130 NLLGNPY 136
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 87/191 (45%), Gaps = 31/191 (16%)
Query: 148 GNIPVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTALRLSHNAFSG-KIPSLTGAWQ 206
+IP G+T + +++LDLS+N ++ I + L +L AL L+ N + + S +
Sbjct: 18 NSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGS 75
Query: 207 LHTLDLDSNQLYGNLPKFPTSLRTXXXXXXXXXXXXXXXXXXVNLKSLDLSSNRF----- 261
L LDL N L + L + L L+L N +
Sbjct: 76 LEHLDLSYNYLSNLSSSWFKPLSS--------------------LTFLNLLGNPYKTLGE 115
Query: 262 TGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLR 321
T SH LT Q++ + +++ T I+ +G T L+EL++ + L+ + P +L S++
Sbjct: 116 TSLFSH--LTKLQILRVG-NMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQ 172
Query: 322 NLTSINLARNQ 332
N++ + L Q
Sbjct: 173 NVSHLILHMKQ 183
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 72/183 (39%), Gaps = 24/183 (13%)
Query: 16 AFAALVPTIVHSATLATDTQVLRLLKRSIDPNTIPRSSFLDSWDFKLDPC---ESSGGQF 72
AF L T++ L+ + Q+ R +DP T L + LD C E G F
Sbjct: 74 AFTGL--TLLEQLDLSDNAQL-----RVVDPTTFRGLGHLHT--LHLDRCGLQELGPGLF 124
Query: 73 LGILCSIPSDNSTSRITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITD 132
G+ + + +YL + + +L LT L L N
Sbjct: 125 RGL----------AALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRG 174
Query: 133 LRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHNSLSGIIPAQ-LSGLRSLTALRLSH 191
L L L L N P L +L TL L N+LS ++PA+ L LRSL LRL+
Sbjct: 175 LHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLS-MLPAEVLVPLRSLQYLRLND 233
Query: 192 NAF 194
N +
Sbjct: 234 NPW 236
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Query: 139 LYLPGNFFTGNIPVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTALRLSHNAFSGKI 198
++L GN + + L L L N+L+GI A +GL L L LS NA +
Sbjct: 36 IFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVV 95
Query: 199 PSLT--GAWQLHTLDLD 213
T G LHTL LD
Sbjct: 96 DPTTFRGLGHLHTLHLD 112
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 20/126 (15%)
Query: 110 TELTTLDLSRNNFRGPIPDTITDL---RKLTTLYLPGNFFTGNIPVGITRLKK------- 159
T +TTLDLS N F+ + D K+ +L L ++ G+ G T K
Sbjct: 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGS-SFGHTNFKDPDNFTFK 270
Query: 160 ------LQTLDLSHNSLSGIIPAQLSGLRSLTALRLSHNAFSGKIP--SLTGAWQLHTLD 211
++T DLS + + ++ + S L L L+ N + KI + G L L
Sbjct: 271 GLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLKELA 329
Query: 212 LDSNQL 217
LD+NQL
Sbjct: 330 LDTNQL 335
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 148 GNIPVGITRLKKLQTLDLSHNSLSGI-IPAQLSGLRSLTALRLSHNAFSGKIPSLTGAWQ 206
+ PVG +K+Q + + +N+L + L + L L +N GK+P+ +
Sbjct: 299 ADAPVG----EKIQIIYIGYNNLKTFPVETSLQKXKKLGXLECLYNQLEGKLPAFGSEIK 354
Query: 207 LHTLDLDSNQL 217
L +L+L NQ+
Sbjct: 355 LASLNLAYNQI 365
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
Query: 251 LKSLDLSSNRFTG-AISHEVLTLPQVVSIDVSVNRLTA-----IEMTTLSGDTHLQELDV 304
L S+DL N+ T + TLP +V ID+S N + + +TL G + D
Sbjct: 490 LTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDA 549
Query: 305 QGNLLRGHLPINLVSLRNLTSINLARNQL 333
QGN P + +LT + + N +
Sbjct: 550 QGNRTLREWPEGITLCPSLTQLQIGSNDI 578
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 85/212 (40%), Gaps = 26/212 (12%)
Query: 134 RKLTTLYLP-GNFFTGNIPVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTALRLSHN 192
K+ +Y+ N T + + + KKL L+ +N L G +PA S ++ L +L L++N
Sbjct: 305 EKIQIIYIGYNNLKTFPVETSLQKXKKLGXLECLYNQLEGKLPAFGSEIK-LASLNLAYN 363
Query: 193 AFSGKIPSLTG-AWQLHTLDLDSNQLYGNLPKFPTSLRTXXXXXXXXXXXXXXXXXXVNL 251
+ + G Q+ L N+ L P V+
Sbjct: 364 QITEIPANFCGFTEQVENLSFAHNK----LKYIPNIFDAKSVSVXSAIDFSYNEIGSVDG 419
Query: 252 KSLD-LSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLR 310
K+ D L F G V SI++S N+++ S + L +++ GN L
Sbjct: 420 KNFDPLDPTPFKGI---------NVSSINLSNNQISKFPKELFSTGSPLSSINLXGNXLT 470
Query: 311 GHLPINLVSLRN--------LTSINLARNQLS 334
+P N + N LTSI+L N+L+
Sbjct: 471 -EIPKNSLKDENENFKNTYLLTSIDLRFNKLT 501
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 83 NSTSRITAIYLDSSGYDGFLTPSIGNLTELTTLDL 117
NS R+T + L+ G G + +IG LTEL L L
Sbjct: 78 NSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLAL 112
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 151 PVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTALRLSHNAFS---------GKIPSL 201
P L+ L LDLS+N+++ I L GL L L L HN + G I L
Sbjct: 478 PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFL 537
Query: 202 TGAWQLHTLDLDSN 215
G LH L+L+SN
Sbjct: 538 KGLSHLHILNLESN 551
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 152 VGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTALRLSHNAFS 195
TR +L +LD+ N++S + P L L L L HN S
Sbjct: 48 ANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 91
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 163 LDLSHNSLSGIIPAQLSGLRSLTALRLSHNAFSG 196
LDLSHN L + PA L+ LR L L+ S NA
Sbjct: 468 LDLSHNRLRALPPA-LAALRCLEVLQASDNALEN 500
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 163 LDLSHNSLSGIIPAQLSGLRSLTALRLSHNAFSG 196
LDLSHN L + PA L+ LR L L+ S NA
Sbjct: 468 LDLSHNRLRALPPA-LAALRCLEVLQASDNALEN 500
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 151 PVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTALRLSHNAFS---------GKIPSL 201
P L+ L LDLS+N+++ I L GL L L L HN + G I L
Sbjct: 483 PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFL 542
Query: 202 TGAWQLHTLDLDSN 215
G LH L+L+SN
Sbjct: 543 KGLSHLHILNLESN 556
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 152 VGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTALRLSHNAFS 195
TR +L +LD+ N++S + P L L L L HN S
Sbjct: 53 ANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 96
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 56/137 (40%), Gaps = 32/137 (23%)
Query: 86 SRITAIYLDSSGYDGFLTPSIG---NLTELTTLDLSRNNFRGPIPDTITD-LRKLTTLYL 141
+++T + LD Y+ T S G +LTEL TL L+ NN +P + D L +L LYL
Sbjct: 59 TKLTWLNLD---YNQLQTLSAGVFDDLTELGTLGLA-NNQLASLPLGVFDHLTQLDKLYL 114
Query: 142 PGNFFTG-----------------------NIPVG-ITRLKKLQTLDLSHNSLSGIIPAQ 177
GN +IP G +L LQTL LS N L +
Sbjct: 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGA 174
Query: 178 LSGLRSLTALRLSHNAF 194
L L + L N F
Sbjct: 175 FDRLGKLQTITLFGNQF 191
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 151 PVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTALRLSHNAFS---------GKIPSL 201
P L+ L LDLS+N+++ I L GL L L L HN + G I L
Sbjct: 473 PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFL 532
Query: 202 TGAWQLHTLDLDSN 215
G LH L+L+SN
Sbjct: 533 KGLSHLHILNLESN 546
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 21/44 (47%)
Query: 152 VGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTALRLSHNAFS 195
TR +L +LD+ N++S + P L L L L HN S
Sbjct: 43 ANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 56/137 (40%), Gaps = 32/137 (23%)
Query: 86 SRITAIYLDSSGYDGFLTPSIG---NLTELTTLDLSRNNFRGPIPDTITD-LRKLTTLYL 141
+++T + LD Y+ T S G +LTEL TL L+ NN +P + D L +L LYL
Sbjct: 59 TKLTWLNLD---YNQLQTLSAGVFDDLTELGTLGLA-NNQLASLPLGVFDHLTQLDKLYL 114
Query: 142 PGNFFTG-----------------------NIPVG-ITRLKKLQTLDLSHNSLSGIIPAQ 177
GN +IP G +L LQTL LS N L +
Sbjct: 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGA 174
Query: 178 LSGLRSLTALRLSHNAF 194
L L + L N F
Sbjct: 175 FDRLGKLQTITLFGNQF 191
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 109 LTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHN 168
L LT+LD+SRN F P+PD+ K+ L L TG V + L+ LD+S+N
Sbjct: 412 LKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSS---TGIRVVKTCIPQTLEVLDVSNN 467
Query: 169 SL 170
+L
Sbjct: 468 NL 469
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 109 LTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHN 168
L LT+LD+SRN F P+PD+ K+ L L TG V + L+ LD+S+N
Sbjct: 386 LKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSS---TGIRVVKTCIPQTLEVLDVSNN 441
Query: 169 SL 170
+L
Sbjct: 442 NL 443
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 76/176 (43%), Gaps = 22/176 (12%)
Query: 160 LQTLDLSHNSLSGIIPAQLSGLRSLTALRLSHNAFSGKIPSLTGAWQLHTLDLDSNQLYG 219
LQ L +S N L+ + PA S L L A +N +P L L L + NQL
Sbjct: 143 LQELSVSDNQLASL-PALPSELCKLWA----YNNQLTSLPMLPSG--LQELSVSDNQL-A 194
Query: 220 NLPKFPTSLRTXXXXXXXXXXXXXXXXXXVNLKSLDLSSNRFTGAISHEVLTLP-QVVSI 278
+LP P+ L LK L +S NR T + LP ++ +
Sbjct: 195 SLPTLPSELYKLWAYNNRLTSLPALPS---GLKELIVSGNRLTS-----LPVLPSELKEL 246
Query: 279 DVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLTSINLARNQLS 334
VS NRLT++ M + L L V N L LP +L+ L + T++NL N LS
Sbjct: 247 MVSGNRLTSLPMLP----SGLLSLSVYRNQL-TRLPESLIHLSSETTVNLEGNPLS 297
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 76/311 (24%), Positives = 118/311 (37%), Gaps = 44/311 (14%)
Query: 101 FLTPSI-GNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKK 159
+L P + N+ LT L L RN+ + KLTTL + N
Sbjct: 107 YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS 166
Query: 160 LQTLDLSHNSLSGIIPAQLSGLRSLTALRLSHNAFSGKIPSLTGAWQLHTLDLDSNQLYG 219
LQ L LS N L+ + LS + SL +S+N S T A + +LD++
Sbjct: 167 LQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLS------TLAIPIAVEELDASHNSI 217
Query: 220 NLPKFPTSLRTXXXXXXXXXXXXXXXXXXVNLKSLDLSSNRFTGAISHEVLTLPQVVSID 279
N+ + P + V L L L N T +L P +V +D
Sbjct: 218 NVVRGPVN---------------------VELTILKLQHNNLTDTAW--LLNYPGLVEVD 254
Query: 280 VSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVS--LRNLTSINLARNQLSGHI 337
+S N L I L+ L + N L + +NL + L ++L+ N L H+
Sbjct: 255 LSYNELEKIMYHPFVKMQRLERLYISNNRL---VALNLYGQPIPTLKVLDLSHNHL-LHV 310
Query: 338 PKVYGAKLGSSWRSLFLDHNFLWGNLPPEFSSSITRIRGSLAKNCLSCPETIRLCHGGQR 397
+ +L+LDHN + + + S+ T +L+ N C L R
Sbjct: 311 ER--NQPQFDRLENLYLDHNSI---VTLKLSTHHTLKNLTLSHNDWDCNSLRALFRNVAR 365
Query: 398 PASECVGQNDK 408
PA + Q+ K
Sbjct: 366 PAVDDADQHCK 376
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 11/120 (9%)
Query: 112 LTTLDLSRNNFRGPIPDTITDLRKLTTL---------YLPGNFFTGNIPVGITRLKKLQT 162
L TL L+RN R +P +I L +L L LP + + L LQ+
Sbjct: 129 LETLTLARNPLRA-LPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQS 187
Query: 163 LDLSHNSLSGIIPAQLSGLRSLTALRLSHNAFSGKIPSLTGAWQLHTLDLDSNQLYGNLP 222
L L + + PA ++ L++L +L++ ++ S P++ +L LDL N P
Sbjct: 188 LRLEWTGIRSL-PASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYP 246
>pdb|3G39|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor
Length = 170
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 32/77 (41%), Gaps = 7/77 (9%)
Query: 139 LYLPGNFFTGNIPVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTALRLSHNAFSG-- 196
LYL N T P RL +L LDL +N L+ + L LT L L+ N
Sbjct: 35 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP 94
Query: 197 -----KIPSLTGAWQLH 208
+ SLT W L+
Sbjct: 95 RGAFDNLKSLTHIWLLN 111
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 32/77 (41%), Gaps = 7/77 (9%)
Query: 139 LYLPGNFFTGNIPVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTALRLSHNAFSG-- 196
LYL N T P RL +L LDL +N L+ + L LT L L+ N
Sbjct: 43 LYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP 102
Query: 197 -----KIPSLTGAWQLH 208
+ SLT W L+
Sbjct: 103 RGAFDNLKSLTHIWLLN 119
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 67/144 (46%), Gaps = 18/144 (12%)
Query: 101 FLTPSIGNLTELTTLDLSRNNFR----GPIPDTI----TDLRKLTTLYLPG--NFFTGNI 150
+ T + +L+ L TLDL+ N + GP +T+ ++ +++ G N + N
Sbjct: 71 YETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANN 130
Query: 151 PVGITR------LKKLQTLDLSHNSLSGIIPAQLSGLR-SLTALRLSHNAFSGKIPSLTG 203
+ + R ++Q LDL N + + A+L+ +L L L +N F +
Sbjct: 131 KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQVV 189
Query: 204 AWQLHTLDLDSNQLYGNLPKFPTS 227
+L TLDL SN+L P+F ++
Sbjct: 190 FAKLKTLDLSSNKLAFMGPEFQSA 213
>pdb|3G3B|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
pdb|3G3B|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor Mutant
In Complex With A Protein Antigen
Length = 170
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 32/77 (41%), Gaps = 7/77 (9%)
Query: 139 LYLPGNFFTGNIPVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTALRLSHNAFSG-- 196
LYL N T P RL +L LDL +N L+ + L LT L L+ N
Sbjct: 35 LYLYDNRITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP 94
Query: 197 -----KIPSLTGAWQLH 208
+ SLT W L+
Sbjct: 95 RGAFDNLRSLTHIWLLN 111
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 65/157 (41%), Gaps = 17/157 (10%)
Query: 149 NIPVGITRLKKLQTLDLSHNSLSGI----IPAQLSGLRSLTALRLSHNAFSG-KIPSLTG 203
N+P + L LDLSHN+LS + P +L+ L SL LSHN + +
Sbjct: 32 NVPQSLPSYTAL--LDLSHNNLSRLRAEWTPTRLTNLHSLL---LSHNHLNFISSEAFVP 86
Query: 204 AWQLHTLDLDSNQLYGNLPKFPTSLRTXX----XXXXXXXXXXXXXXXXVNLKSLDLSSN 259
L LDL SN L+ + L+ L+ L LS N
Sbjct: 87 VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN 146
Query: 260 ---RFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTL 293
RF + + LP+++ +D+S N+L + +T L
Sbjct: 147 QISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDL 183
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 67/144 (46%), Gaps = 18/144 (12%)
Query: 101 FLTPSIGNLTELTTLDLSRNNFR----GPIPDTI----TDLRKLTTLYLPG--NFFTGNI 150
+ T + +L+ L TLDL+ N + GP +T+ ++ +++ G N + N
Sbjct: 71 YETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANN 130
Query: 151 PVGITR------LKKLQTLDLSHNSLSGIIPAQLSGLR-SLTALRLSHNAFSGKIPSLTG 203
+ + R ++Q LDL N + + A+L+ +L L L +N F +
Sbjct: 131 KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQVV 189
Query: 204 AWQLHTLDLDSNQLYGNLPKFPTS 227
+L TLDL SN+L P+F ++
Sbjct: 190 FAKLKTLDLSSNKLAFMGPEFQSA 213
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 136 LTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTALRLSHNAFS 195
LT L+L GN T + L L L LS NS+S + L+ L L L++N
Sbjct: 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253
Query: 196 GKIP 199
K+P
Sbjct: 254 -KVP 256
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 136 LTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTALRLSHNAFS 195
LT L+L GN T + L L L LS NS+S + L+ L L L++N
Sbjct: 194 LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253
Query: 196 GKIP 199
K+P
Sbjct: 254 -KVP 256
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,348,714
Number of Sequences: 62578
Number of extensions: 441584
Number of successful extensions: 1388
Number of sequences better than 100.0: 101
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 893
Number of HSP's gapped (non-prelim): 337
length of query: 409
length of database: 14,973,337
effective HSP length: 101
effective length of query: 308
effective length of database: 8,652,959
effective search space: 2665111372
effective search space used: 2665111372
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)