Query 038636
Match_columns 409
No_of_seqs 564 out of 4080
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 13:04:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038636.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038636hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 3.2E-44 7E-49 385.7 31.0 336 30-383 27-368 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.6E-37 3.4E-42 334.0 23.5 293 85-381 117-414 (968)
3 KOG4194 Membrane glycoprotein 100.0 3.3E-31 7.2E-36 249.5 3.3 297 85-383 124-428 (873)
4 KOG4194 Membrane glycoprotein 100.0 6.8E-31 1.5E-35 247.4 4.4 300 85-388 77-410 (873)
5 KOG0444 Cytoskeletal regulator 100.0 5.3E-31 1.1E-35 249.9 -3.4 308 87-402 8-348 (1255)
6 KOG0444 Cytoskeletal regulator 100.0 8.1E-31 1.8E-35 248.6 -5.9 299 87-395 56-364 (1255)
7 KOG0472 Leucine-rich repeat pr 99.9 3.5E-29 7.6E-34 226.5 -6.8 94 294-392 432-549 (565)
8 PLN03210 Resistant to P. syrin 99.9 1.2E-23 2.7E-28 227.7 24.7 283 86-380 589-878 (1153)
9 PRK15387 E3 ubiquitin-protein 99.9 6E-24 1.3E-28 215.6 18.7 263 88-391 203-467 (788)
10 KOG0472 Leucine-rich repeat pr 99.9 6.8E-28 1.5E-32 218.2 -10.5 268 88-389 47-316 (565)
11 PLN03210 Resistant to P. syrin 99.9 6.3E-22 1.4E-26 214.5 23.7 285 85-382 610-904 (1153)
12 PRK15370 E3 ubiquitin-protein 99.9 6.4E-22 1.4E-26 202.0 21.2 316 29-383 60-427 (754)
13 PRK15387 E3 ubiquitin-protein 99.9 5.8E-22 1.3E-26 201.3 16.8 248 85-370 221-468 (788)
14 KOG0618 Serine/threonine phosp 99.9 1.4E-24 3.1E-29 214.7 -3.9 242 135-383 242-488 (1081)
15 KOG0618 Serine/threonine phosp 99.9 3.6E-24 7.8E-29 211.9 -2.3 153 226-383 287-464 (1081)
16 PRK15370 E3 ubiquitin-protein 99.9 4.7E-21 1E-25 195.7 15.4 249 86-361 178-429 (754)
17 cd00116 LRR_RI Leucine-rich re 99.8 1.3E-21 2.9E-26 184.5 2.5 271 91-383 3-319 (319)
18 KOG4237 Extracellular matrix p 99.8 9.7E-22 2.1E-26 178.1 -2.2 270 85-359 66-358 (498)
19 cd00116 LRR_RI Leucine-rich re 99.8 4.6E-21 1E-25 180.7 1.0 258 86-359 23-319 (319)
20 KOG4237 Extracellular matrix p 99.7 2.6E-20 5.6E-25 169.0 -6.0 272 111-386 68-361 (498)
21 PLN03150 hypothetical protein; 99.7 1.4E-16 3.1E-21 162.0 15.3 165 28-200 368-533 (623)
22 KOG0617 Ras suppressor protein 99.7 1.1E-18 2.4E-23 141.4 -4.7 178 179-383 30-211 (264)
23 KOG0617 Ras suppressor protein 99.7 1.5E-18 3.2E-23 140.7 -4.1 164 226-395 33-198 (264)
24 KOG0532 Leucine-rich repeat (L 99.4 2.5E-14 5.5E-19 135.9 -3.0 150 226-384 98-247 (722)
25 COG4886 Leucine-rich repeat (L 99.4 1E-12 2.2E-17 127.7 6.9 196 114-316 97-296 (394)
26 KOG1909 Ran GTPase-activating 99.4 2.9E-14 6.4E-19 128.2 -3.7 88 106-194 26-132 (382)
27 COG4886 Leucine-rich repeat (L 99.3 2.4E-12 5.2E-17 125.1 7.3 198 161-366 96-296 (394)
28 PLN03150 hypothetical protein; 99.3 1.8E-11 3.9E-16 124.9 9.4 102 136-237 420-526 (623)
29 KOG1259 Nischarin, modulator o 99.2 3E-12 6.5E-17 113.2 1.5 136 244-387 279-416 (490)
30 KOG1909 Ran GTPase-activating 99.2 2E-12 4.3E-17 116.5 -0.6 239 85-333 29-310 (382)
31 KOG4658 Apoptotic ATPase [Sign 99.2 9.8E-12 2.1E-16 129.7 4.2 299 85-388 544-866 (889)
32 KOG3207 Beta-tubulin folding c 99.2 3.4E-12 7.5E-17 118.1 0.1 202 131-334 118-339 (505)
33 KOG0532 Leucine-rich repeat (L 99.2 7.9E-13 1.7E-17 125.9 -4.6 196 133-357 74-270 (722)
34 PF14580 LRR_9: Leucine-rich r 99.1 1.6E-10 3.4E-15 97.6 7.0 127 244-378 14-147 (175)
35 KOG3207 Beta-tubulin folding c 99.1 1.1E-11 2.3E-16 114.9 -0.6 202 155-360 118-339 (505)
36 KOG1259 Nischarin, modulator o 99.1 2.5E-11 5.4E-16 107.4 -0.2 129 205-337 284-415 (490)
37 KOG4658 Apoptotic ATPase [Sign 99.0 3.2E-10 6.9E-15 118.5 6.5 287 86-380 523-828 (889)
38 PF14580 LRR_9: Leucine-rich r 99.0 2.4E-10 5.3E-15 96.5 4.5 106 108-218 17-126 (175)
39 KOG0531 Protein phosphatase 1, 99.0 2.8E-11 6.2E-16 118.0 -2.5 193 109-310 71-268 (414)
40 KOG0531 Protein phosphatase 1, 99.0 3.8E-11 8.2E-16 117.2 -2.6 241 131-383 69-317 (414)
41 PF13855 LRR_8: Leucine rich r 98.9 1.9E-09 4.1E-14 74.9 3.9 59 274-332 2-60 (61)
42 PF13855 LRR_8: Leucine rich r 98.8 4.8E-09 1E-13 72.8 3.5 61 249-309 1-61 (61)
43 KOG1859 Leucine-rich repeat pr 98.6 5.4E-10 1.2E-14 109.6 -6.7 125 250-383 165-291 (1096)
44 KOG4579 Leucine-rich repeat (L 98.6 3.3E-09 7.1E-14 83.5 -1.5 138 250-393 28-170 (177)
45 KOG2120 SCF ubiquitin ligase, 98.6 1.1E-09 2.4E-14 97.0 -5.7 172 135-308 186-374 (419)
46 COG5238 RNA1 Ran GTPase-activa 98.5 4.3E-09 9.4E-14 92.2 -3.1 137 247-383 155-315 (388)
47 KOG2982 Uncharacterized conser 98.5 1.7E-08 3.8E-13 89.5 -0.1 82 248-329 198-287 (418)
48 KOG1859 Leucine-rich repeat pr 98.4 3.7E-09 8E-14 103.9 -6.7 127 227-360 165-292 (1096)
49 COG5238 RNA1 Ran GTPase-activa 98.3 1.2E-07 2.7E-12 83.2 0.4 180 155-335 89-317 (388)
50 KOG4579 Leucine-rich repeat (L 98.2 1.4E-07 3.1E-12 74.4 -1.5 110 274-388 28-141 (177)
51 KOG2120 SCF ubiquitin ligase, 98.2 3E-08 6.5E-13 88.1 -6.3 215 160-381 138-373 (419)
52 PRK15386 type III secretion pr 98.2 1.4E-05 3E-10 76.0 11.0 136 106-259 48-187 (426)
53 PF08263 LRRNT_2: Leucine rich 98.2 2.3E-06 4.9E-11 54.5 3.7 40 31-78 2-43 (43)
54 KOG2982 Uncharacterized conser 98.2 3E-07 6.5E-12 81.8 -0.9 84 109-192 70-156 (418)
55 PF12799 LRR_4: Leucine Rich r 98.0 6.5E-06 1.4E-10 52.5 3.9 37 297-334 1-37 (44)
56 PRK15386 type III secretion pr 98.0 2.6E-05 5.7E-10 74.2 9.5 132 86-237 52-188 (426)
57 PF12799 LRR_4: Leucine Rich r 98.0 4.5E-06 9.7E-11 53.3 2.9 35 348-383 2-36 (44)
58 KOG1644 U2-associated snRNP A' 98.0 1.1E-05 2.3E-10 68.2 5.9 100 182-282 42-149 (233)
59 KOG3665 ZYG-1-like serine/thre 97.7 1.8E-05 3.9E-10 81.3 2.5 106 245-353 169-281 (699)
60 KOG1644 U2-associated snRNP A' 97.7 9.3E-05 2E-09 62.7 5.9 103 227-330 43-149 (233)
61 KOG2739 Leucine-rich acidic nu 97.4 7E-05 1.5E-09 65.9 2.3 101 108-212 41-150 (260)
62 KOG3665 ZYG-1-like serine/thre 97.4 0.00011 2.5E-09 75.5 3.2 83 109-193 147-231 (699)
63 KOG2739 Leucine-rich acidic nu 97.3 0.00017 3.7E-09 63.6 2.8 93 125-219 34-130 (260)
64 PF13306 LRR_5: Leucine rich r 97.1 0.0015 3.3E-08 52.3 6.9 106 244-356 7-112 (129)
65 KOG4341 F-box protein containi 96.9 4.4E-05 9.5E-10 71.4 -4.5 137 247-383 292-438 (483)
66 KOG2123 Uncharacterized conser 96.7 8.4E-05 1.8E-09 66.0 -4.3 99 85-188 18-123 (388)
67 KOG2123 Uncharacterized conser 96.6 6.4E-05 1.4E-09 66.7 -5.4 99 109-211 18-123 (388)
68 PF13306 LRR_5: Leucine rich r 96.5 0.01 2.3E-07 47.4 7.3 112 227-344 13-125 (129)
69 KOG4341 F-box protein containi 96.5 0.00014 3E-09 68.1 -4.5 289 86-377 138-458 (483)
70 PF00560 LRR_1: Leucine Rich R 96.0 0.0026 5.7E-08 33.7 0.7 18 349-367 2-19 (22)
71 PF00560 LRR_1: Leucine Rich R 95.6 0.0058 1.3E-07 32.4 1.1 17 323-340 2-18 (22)
72 KOG1947 Leucine rich repeat pr 95.1 0.0029 6.2E-08 63.0 -2.2 12 226-237 295-306 (482)
73 KOG4308 LRR-containing protein 94.0 0.00061 1.3E-08 67.2 -9.6 62 158-219 87-158 (478)
74 PF13504 LRR_7: Leucine rich r 93.3 0.047 1E-06 26.8 1.1 12 349-360 3-14 (17)
75 KOG0473 Leucine-rich repeat pr 93.3 0.0021 4.5E-08 55.9 -6.4 87 292-383 37-123 (326)
76 KOG4308 LRR-containing protein 93.2 0.00058 1.3E-08 67.3 -11.3 180 182-361 87-304 (478)
77 PF13516 LRR_6: Leucine Rich r 92.8 0.055 1.2E-06 29.2 1.1 19 321-339 2-20 (24)
78 KOG3864 Uncharacterized conser 92.0 0.029 6.3E-07 47.9 -1.1 34 275-308 103-136 (221)
79 KOG0473 Leucine-rich repeat pr 90.9 0.0045 9.8E-08 53.8 -7.1 84 85-171 41-124 (326)
80 KOG1947 Leucine rich repeat pr 90.7 0.12 2.7E-06 51.3 1.6 107 226-332 188-306 (482)
81 KOG3864 Uncharacterized conser 88.9 0.075 1.6E-06 45.5 -1.3 81 250-330 102-185 (221)
82 smart00370 LRR Leucine-rich re 86.9 0.61 1.3E-05 25.5 2.1 13 135-147 3-15 (26)
83 smart00369 LRR_TYP Leucine-ric 86.9 0.61 1.3E-05 25.5 2.1 13 135-147 3-15 (26)
84 smart00369 LRR_TYP Leucine-ric 85.9 0.63 1.4E-05 25.4 1.8 12 349-360 4-15 (26)
85 smart00370 LRR Leucine-rich re 85.9 0.63 1.4E-05 25.4 1.8 12 349-360 4-15 (26)
86 smart00364 LRR_BAC Leucine-ric 76.1 1.7 3.8E-05 23.9 1.2 16 349-365 4-19 (26)
87 smart00368 LRR_RI Leucine rich 74.7 1.9 4E-05 24.2 1.2 13 322-334 3-15 (28)
88 KOG4242 Predicted myosin-I-bin 73.9 7.1 0.00015 38.1 5.5 87 297-383 354-452 (553)
89 smart00365 LRR_SD22 Leucine-ri 71.3 3.2 7E-05 22.9 1.6 12 349-360 4-15 (26)
90 KOG3763 mRNA export factor TAP 71.3 3.1 6.7E-05 41.3 2.5 37 271-307 216-254 (585)
91 KOG3763 mRNA export factor TAP 67.5 3.7 7.9E-05 40.8 2.2 70 294-363 215-286 (585)
92 KOG4242 Predicted myosin-I-bin 63.4 41 0.0009 33.1 8.2 85 250-334 355-453 (553)
93 smart00367 LRR_CC Leucine-rich 43.4 13 0.00028 20.1 0.9 10 322-331 3-12 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.2e-44 Score=385.69 Aligned_cols=336 Identities=33% Similarity=0.481 Sum_probs=218.8
Q ss_pred ChhhHHHHHHHHhhCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeecCCCCCCCCCcEEEEEccCCCCCCCCccccCCC
Q 038636 30 LATDTQVLRLLKRSIDPNTIPRSSFLDSWDFKLDPCESSGGQFLGILCSIPSDNSTSRITAIYLDSSGYDGFLTPSIGNL 109 (409)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~w~~~~~~C~~~~~~w~gv~c~~~~~~~~~~v~~L~L~~~~l~~~~~~~l~~l 109 (409)
.+.|++||++||+++. ++...+.+|+...++|. |.||+|+. .++|+.|+++++.+.|.+++.+..+
T Consensus 27 ~~~~~~~l~~~~~~~~----~~~~~~~~w~~~~~~c~-----w~gv~c~~-----~~~v~~L~L~~~~i~~~~~~~~~~l 92 (968)
T PLN00113 27 HAEELELLLSFKSSIN----DPLKYLSNWNSSADVCL-----WQGITCNN-----SSRVVSIDLSGKNISGKISSAIFRL 92 (968)
T ss_pred CHHHHHHHHHHHHhCC----CCcccCCCCCCCCCCCc-----CcceecCC-----CCcEEEEEecCCCccccCChHHhCC
Confidence 5678999999999983 33455789987778897 59999975 5789999999999999999899999
Q ss_pred CCCcEEEccCCcCCCCCccccc-CCCCCcEEeccCccCCccCchhccCCCCCCEEeccCCcCCCCCchhhcCCCCCCeEE
Q 038636 110 TELTTLDLSRNNFRGPIPDTIT-DLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTALR 188 (409)
Q Consensus 110 ~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 188 (409)
++|++|+|++|.+++.+|..+. .+++|++|++++|.+++.+|. +.+++|++|++++|.+++.+|..++++++|++|+
T Consensus 93 ~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~ 170 (968)
T PLN00113 93 PYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLD 170 (968)
T ss_pred CCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEE
Confidence 9999999999999888887765 788888888888877766664 3456666666666666666666666666666666
Q ss_pred eecCcCCCCCCC-CCCCCCcCEEeCCCCCCCCCCCC---CCCCCcEEEeecccCCCCCc-ccCCCCCCCEEEeeCCcCCC
Q 038636 189 LSHNAFSGKIPS-LTGAWQLHTLDLDSNQLYGNLPK---FPTSLRTLSLSHNLLSGHLS-SLRNLVNLKSLDLSSNRFTG 263 (409)
Q Consensus 189 L~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~l~~n~l~~ 263 (409)
+++|.+.+.+|. +.++++|++|++++|.+.+.+|. -.++|+.|++++|.+.+.+| .++++++|++|++++|.+.+
T Consensus 171 L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 250 (968)
T PLN00113 171 LGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTG 250 (968)
T ss_pred CccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceecc
Confidence 666666655554 56666666666666666655551 12555666666666555555 55555666666666665555
Q ss_pred CCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchhhhcCCCCCCEEEccCCeecccCchhHhh
Q 038636 264 AISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLTSINLARNQLSGHIPKVYGA 343 (409)
Q Consensus 264 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~ 343 (409)
.+|..+.++++|++|++++|++++..+..+..+++|++|++++|.+.+.+|..+.++++|+.|++++|.+++.+|..+..
T Consensus 251 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 330 (968)
T PLN00113 251 PIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTS 330 (968)
T ss_pred ccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhc
Confidence 55555555555555555555555544444455555555555555555555555555555555555555555555554444
Q ss_pred hccCCccEEEccCCcCcccCchhhhcCCCCCeEEcCCCcc
Q 038636 344 KLGSSWRSLFLDHNFLWGNLPPEFSSSITRIRGSLAKNCL 383 (409)
Q Consensus 344 ~~~~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~l~~N~l 383 (409)
++. |++|++++|.+++.+|..+..+++|+.|++++|++
T Consensus 331 l~~--L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l 368 (968)
T PLN00113 331 LPR--LQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNL 368 (968)
T ss_pred CCC--CCEEECcCCCCcCcCChHHhCCCCCcEEECCCCee
Confidence 433 55555555555544554444444455555544444
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.6e-37 Score=333.96 Aligned_cols=293 Identities=34% Similarity=0.481 Sum_probs=162.3
Q ss_pred CCcEEEEEccCCCCCCCCccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEe
Q 038636 85 TSRITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLD 164 (409)
Q Consensus 85 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~ 164 (409)
..+++.|++++|.+++.+|. +.+++|++|++++|.+++.+|..++++++|++|++++|.+.+.+|..++++++|++|+
T Consensus 117 l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 194 (968)
T PLN00113 117 SSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLT 194 (968)
T ss_pred CCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeee
Confidence 35667777777766665553 3456666666666666666666666666666666666666666666666666666666
Q ss_pred ccCCcCCCCCchhhcCCCCCCeEEeecCcCCCCCCC-CCCCCCcCEEeCCCCCCCCCCCC---CCCCCcEEEeecccCCC
Q 038636 165 LSHNSLSGIIPAQLSGLRSLTALRLSHNAFSGKIPS-LTGAWQLHTLDLDSNQLYGNLPK---FPTSLRTLSLSHNLLSG 240 (409)
Q Consensus 165 l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~ 240 (409)
+++|.+.+.+|..++++++|++|++++|.+.+.+|. +..+++|++|++++|.+.+.+|. -.++|++|++++|.+.+
T Consensus 195 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 274 (968)
T PLN00113 195 LASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG 274 (968)
T ss_pred ccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeec
Confidence 666666666666666666666666666666655554 55566666666666665555551 12455555555555555
Q ss_pred CCc-ccCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchhhhcC
Q 038636 241 HLS-SLRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVS 319 (409)
Q Consensus 241 ~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~ 319 (409)
..| .+.++++|+.|++++|.+.+.+|..+.++++|+.|++++|.+++..+..+..+++|+.|++++|.+++.+|..++.
T Consensus 275 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 354 (968)
T PLN00113 275 PIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK 354 (968)
T ss_pred cCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhC
Confidence 544 5555555555555555555555555555555555555555555544444455555555555555555555555555
Q ss_pred CCCCCEEEccCCeecccCchhHhhhccCCccEEEccCCcCcccCchhhhcCCCCCeEEcCCC
Q 038636 320 LRNLTSINLARNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWGNLPPEFSSSITRIRGSLAKN 381 (409)
Q Consensus 320 l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~l~~N 381 (409)
+++|+.|++++|++++.+|..++.... |+.|++++|.+.+.+|..+..+++|+.|++++|
T Consensus 355 ~~~L~~L~Ls~n~l~~~~p~~~~~~~~--L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n 414 (968)
T PLN00113 355 HNNLTVLDLSTNNLTGEIPEGLCSSGN--LFKLILFSNSLEGEIPKSLGACRSLRRVRLQDN 414 (968)
T ss_pred CCCCcEEECCCCeeEeeCChhHhCcCC--CCEEECcCCEecccCCHHHhCCCCCCEEECcCC
Confidence 555555555555555544444443322 333333333333333333333333333333333
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.96 E-value=3.3e-31 Score=249.47 Aligned_cols=297 Identities=23% Similarity=0.216 Sum_probs=191.0
Q ss_pred CCcEEEEEccCCCCCCCCccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEe
Q 038636 85 TSRITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLD 164 (409)
Q Consensus 85 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~ 164 (409)
.++++.|+|.+|.++..-..++..++.||+|||+.|.++..--..|..=.++++|+|++|.++..--..|..+.+|..|.
T Consensus 124 sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlk 203 (873)
T KOG4194|consen 124 SGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLK 203 (873)
T ss_pred ccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeee
Confidence 45566666666666665556666666666666666666533333444445666666666666654445566666666666
Q ss_pred ccCCcCCCCCchhhcCCCCCCeEEeecCcCCCC-CCCCCCCCCcCEEeCCCCCCCCCCCCC---CCCCcEEEeecccCCC
Q 038636 165 LSHNSLSGIIPAQLSGLRSLTALRLSHNAFSGK-IPSLTGAWQLHTLDLDSNQLYGNLPKF---PTSLRTLSLSHNLLSG 240 (409)
Q Consensus 165 l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~~ 240 (409)
|+.|.++...+..|.++++|+.|+|..|++.-. .-.|.++++|+.|.+..|++....... ..++++|+|+.|+++.
T Consensus 204 LsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~ 283 (873)
T KOG4194|consen 204 LSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA 283 (873)
T ss_pred cccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhh
Confidence 666666654445566666666666666665422 112566666666666666655333311 2667777777777766
Q ss_pred CCc-ccCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchhhhcC
Q 038636 241 HLS-SLRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVS 319 (409)
Q Consensus 241 ~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~ 319 (409)
.-. ++.++++|+.|++++|.+...-++.....++|++|+|++|+++..+..+|..+..|++|+|++|.++..-...|..
T Consensus 284 vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~ 363 (873)
T KOG4194|consen 284 VNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVG 363 (873)
T ss_pred hhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHH
Confidence 555 6667777777777777777666666667777777777777777766667777777777777777776544455666
Q ss_pred CCCCCEEEccCCeecccCch---hHhhhccCCccEEEccCCcCcccCchhhhcCCCCCeEEcCCCcc
Q 038636 320 LRNLTSINLARNQLSGHIPK---VYGAKLGSSWRSLFLDHNFLWGNLPPEFSSSITRIRGSLAKNCL 383 (409)
Q Consensus 320 l~~L~~L~L~~N~l~~~~p~---~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~l~~N~l 383 (409)
+++|+.|||++|.+++.+.+ .|..++. |++|++.+|++...--..|..+..|+.|||.+|.+
T Consensus 364 lssL~~LdLr~N~ls~~IEDaa~~f~gl~~--LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 364 LSSLHKLDLRSNELSWCIEDAAVAFNGLPS--LRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred hhhhhhhcCcCCeEEEEEecchhhhccchh--hhheeecCceeeecchhhhccCcccceecCCCCcc
Confidence 77777777777777765544 2334433 77777777777633334567777777777777777
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.96 E-value=6.8e-31 Score=247.40 Aligned_cols=300 Identities=22% Similarity=0.255 Sum_probs=220.0
Q ss_pred CCcEEEEEccCCCCCCCCccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchh-----------
Q 038636 85 TSRITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVG----------- 153 (409)
Q Consensus 85 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~----------- 153 (409)
+..+..|++++|.+...-+..|.++++|+.+++..|.++ .+|.......+|+.|+|.+|.++..-..+
T Consensus 77 p~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslD 155 (873)
T KOG4194|consen 77 PSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLD 155 (873)
T ss_pred ccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhh
Confidence 345667778777777766666677777777777777665 55554444444555555555544332333
Q ss_pred -------------ccCCCCCCEEeccCCcCCCCCchhhcCCCCCCeEEeecCcCCCCCCC--CCCCCCcCEEeCCCCCCC
Q 038636 154 -------------ITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTALRLSHNAFSGKIPS--LTGAWQLHTLDLDSNQLY 218 (409)
Q Consensus 154 -------------l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~--~~~l~~L~~L~l~~n~l~ 218 (409)
|..-.++++|+|++|.++..-...|.++.+|..|.|+.|+++ .+|. |.++++|+.|+|..|++.
T Consensus 156 LSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~ir 234 (873)
T KOG4194|consen 156 LSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIR 234 (873)
T ss_pred hhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhcccccee
Confidence 333345566666666665555555666666666666666666 3333 555667777777666654
Q ss_pred CC---CCCCCCCCcEEEeecccCCCCCc-ccCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCCCCCC
Q 038636 219 GN---LPKFPTSLRTLSLSHNLLSGHLS-SLRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLS 294 (409)
Q Consensus 219 ~~---~~~~~~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 294 (409)
-. ...-.++|+.|.+..|.+..... .|..+.++++|+|+.|+++..-..++.++..|+.|++++|.|..+.+..++
T Consensus 235 ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Ws 314 (873)
T KOG4194|consen 235 IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWS 314 (873)
T ss_pred eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhh
Confidence 21 11223677777777777776666 778888999999999999877777888999999999999999999999999
Q ss_pred CCCCCCEEEccCCcCCCcchhhhcCCCCCCEEEccCCeecccCchhHhhhccCCccEEEccCCcCcccCch---hhhcCC
Q 038636 295 GDTHLQELDVQGNLLRGHLPINLVSLRNLTSINLARNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWGNLPP---EFSSSI 371 (409)
Q Consensus 295 ~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~p~---~~~~~~ 371 (409)
.+++|++|+|++|+++..-+..|..+..|++|+|++|.+...-...|..+.+ |++|||++|.+++.|.+ .|..++
T Consensus 315 ftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lss--L~~LdLr~N~ls~~IEDaa~~f~gl~ 392 (873)
T KOG4194|consen 315 FTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSS--LHKLDLRSNELSWCIEDAAVAFNGLP 392 (873)
T ss_pred hcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhh--hhhhcCcCCeEEEEEecchhhhccch
Confidence 9999999999999999777888999999999999999998666667777766 99999999999987754 477789
Q ss_pred CCCeEEcCCCcc-CCCch
Q 038636 372 TRIRGSLAKNCL-SCPET 388 (409)
Q Consensus 372 ~L~~L~l~~N~l-~~p~~ 388 (409)
+|+.|++.||++ .||..
T Consensus 393 ~LrkL~l~gNqlk~I~kr 410 (873)
T KOG4194|consen 393 SLRKLRLTGNQLKSIPKR 410 (873)
T ss_pred hhhheeecCceeeecchh
Confidence 999999999999 77753
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=5.3e-31 Score=249.90 Aligned_cols=308 Identities=25% Similarity=0.337 Sum_probs=167.5
Q ss_pred cEEEEEccCCCCC-CCCccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEec
Q 038636 87 RITAIYLDSSGYD-GFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDL 165 (409)
Q Consensus 87 ~v~~L~L~~~~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l 165 (409)
-|+.+++++|.++ +..|.....++.++.|.|...++. .+|+.++.+.+|++|.+++|++. .+-..++.++.|+.+++
T Consensus 8 FVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~ 85 (1255)
T KOG0444|consen 8 FVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIV 85 (1255)
T ss_pred eeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhh
Confidence 3455555555555 344555555555555555555554 45555555555555555555554 44444555555555555
Q ss_pred cCCcCCC-CCchhhcCCCCCCeEEeecCcCCCCCCCCCCCCCcCEEeCCCCCCCCCCC-CCC---CCCcEEEeecccCCC
Q 038636 166 SHNSLSG-IIPAQLSGLRSLTALRLSHNAFSGKIPSLTGAWQLHTLDLDSNQLYGNLP-KFP---TSLRTLSLSHNLLSG 240 (409)
Q Consensus 166 ~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~---~~L~~L~l~~n~l~~ 240 (409)
..|++.. -+|..+..+..|+.|||++|++......+...+++-.|+|++|++.. || .++ +.|-.|+|++|++..
T Consensus 86 R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~Iet-IPn~lfinLtDLLfLDLS~NrLe~ 164 (1255)
T KOG0444|consen 86 RDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIET-IPNSLFINLTDLLFLDLSNNRLEM 164 (1255)
T ss_pred hccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCcccc-CCchHHHhhHhHhhhccccchhhh
Confidence 5555532 24555555555555555555555222225555555555555555542 22 222 334445555555555
Q ss_pred CCcccCCCCCCCEEEeeCCcCC-------------------------CCCchhhcCCCCCcEEEccCCcCCccCCCCCCC
Q 038636 241 HLSSLRNLVNLKSLDLSSNRFT-------------------------GAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSG 295 (409)
Q Consensus 241 ~~~~l~~l~~L~~L~l~~n~l~-------------------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 295 (409)
.+|.+..+..|++|+|++|.+. ..+|.++..+.+|..+|++.|++.. .|..+-.
T Consensus 165 LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~-vPecly~ 243 (1255)
T KOG0444|consen 165 LPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPI-VPECLYK 243 (1255)
T ss_pred cCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCc-chHHHhh
Confidence 5555555555555555555443 2344455555555555555555543 3334444
Q ss_pred CCCCCEEEccCCcCCCcchhhhcCCCCCCEEEccCCeecccCchhHhhhccCCccEEEccCCcCc-ccCchhhhcCCCCC
Q 038636 296 DTHLQELDVQGNLLRGHLPINLVSLRNLTSINLARNQLSGHIPKVYGAKLGSSWRSLFLDHNFLW-GNLPPEFSSSITRI 374 (409)
Q Consensus 296 ~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~-~~~p~~~~~~~~L~ 374 (409)
+++|+.|+||+|+|+ ++....+...+|+.|++++|+++ .+|..++.++. |+.|++.+|+++ ..||+.++++..|+
T Consensus 244 l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~k--L~kLy~n~NkL~FeGiPSGIGKL~~Le 319 (1255)
T KOG0444|consen 244 LRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTK--LTKLYANNNKLTFEGIPSGIGKLIQLE 319 (1255)
T ss_pred hhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHH--HHHHHhccCcccccCCccchhhhhhhH
Confidence 555555555555555 33333444455555666666665 56666666655 666666666665 23666777777777
Q ss_pred eEEcCCCcc-CCCchhhhccCCCCCcccc
Q 038636 375 RGSLAKNCL-SCPETIRLCHGGQRPASEC 402 (409)
Q Consensus 375 ~L~l~~N~l-~~p~~l~~~~~~~~~~~~C 402 (409)
++..++|.+ -+|+.+..|.++++....|
T Consensus 320 vf~aanN~LElVPEglcRC~kL~kL~L~~ 348 (1255)
T KOG0444|consen 320 VFHAANNKLELVPEGLCRCVKLQKLKLDH 348 (1255)
T ss_pred HHHhhccccccCchhhhhhHHHHHhcccc
Confidence 777777776 6677777776665554444
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.95 E-value=8.1e-31 Score=248.63 Aligned_cols=299 Identities=26% Similarity=0.352 Sum_probs=233.3
Q ss_pred cEEEEEccCCCCCCCCccccCCCCCCcEEEccCCcCCC-CCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEec
Q 038636 87 RITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRG-PIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDL 165 (409)
Q Consensus 87 ~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l 165 (409)
+++.|.+.+|++... -..+..++.||.+++..|++.. -+|+.+.++..|..|||++|++. +.|..+..-+++-.|+|
T Consensus 56 kLEHLs~~HN~L~~v-hGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNL 133 (1255)
T KOG0444|consen 56 KLEHLSMAHNQLISV-HGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNL 133 (1255)
T ss_pred hhhhhhhhhhhhHhh-hhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEc
Confidence 455556666665432 2346677777777777777642 37777888888888888888887 77888888888888888
Q ss_pred cCCcCCCCCch-hhcCCCCCCeEEeecCcCCCCCCCCCCCCCcCEEeCCCCCCCCC----CCCCCCCCcEEEeecccCC-
Q 038636 166 SHNSLSGIIPA-QLSGLRSLTALRLSHNAFSGKIPSLTGAWQLHTLDLDSNQLYGN----LPKFPTSLRTLSLSHNLLS- 239 (409)
Q Consensus 166 ~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~L~~L~l~~n~l~- 239 (409)
++|++. .||. -+-+++.|-.|||++|++....|.+..+..|++|+|++|.+... +|++ ++|+.|.+++.+-+
T Consensus 134 S~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsm-tsL~vLhms~TqRTl 211 (1255)
T KOG0444|consen 134 SYNNIE-TIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSM-TSLSVLHMSNTQRTL 211 (1255)
T ss_pred ccCccc-cCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccc-hhhhhhhcccccchh
Confidence 888887 4454 45678888888888888876556688888888888888876532 2222 67888888875432
Q ss_pred -CCCcccCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchhhhc
Q 038636 240 -GHLSSLRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLV 318 (409)
Q Consensus 240 -~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~ 318 (409)
..++++..+.+|..+|++.|.+. .+|+.+.++++|+.|+|++|+++... ...+...+|++|++|.|+++ .+|..+.
T Consensus 212 ~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~-~~~~~W~~lEtLNlSrNQLt-~LP~avc 288 (1255)
T KOG0444|consen 212 DNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELN-MTEGEWENLETLNLSRNQLT-VLPDAVC 288 (1255)
T ss_pred hcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeee-ccHHHHhhhhhhccccchhc-cchHHHh
Confidence 23338888999999999999998 88999999999999999999998743 23345578999999999999 8899999
Q ss_pred CCCCCCEEEccCCeec-ccCchhHhhhccCCccEEEccCCcCcccCchhhhcCCCCCeEEcCCCcc-CCCchhhhccCC
Q 038636 319 SLRNLTSINLARNQLS-GHIPKVYGAKLGSSWRSLFLDHNFLWGNLPPEFSSSITRIRGSLAKNCL-SCPETIRLCHGG 395 (409)
Q Consensus 319 ~l~~L~~L~L~~N~l~-~~~p~~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~l~~N~l-~~p~~l~~~~~~ 395 (409)
++++|+.|++.+|+++ .-+|..++.+.. |+.+..++|.+. -+|+.++.+..|+.|.|+.|.+ ++|+.|..+...
T Consensus 289 KL~kL~kLy~n~NkL~FeGiPSGIGKL~~--Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l 364 (1255)
T KOG0444|consen 289 KLTKLTKLYANNNKLTFEGIPSGIGKLIQ--LEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDL 364 (1255)
T ss_pred hhHHHHHHHhccCcccccCCccchhhhhh--hHHHHhhccccc-cCchhhhhhHHHHHhcccccceeechhhhhhcCCc
Confidence 9999999999999876 357888888877 888888988887 7899999999999999999988 888888766554
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.94 E-value=3.5e-29 Score=226.50 Aligned_cols=94 Identities=28% Similarity=0.297 Sum_probs=63.9
Q ss_pred CCCCCCCEEEccCCcCCCcchhhhcCCCCCCEEEccCCeecccCc------------------------hhHhhhccCCc
Q 038636 294 SGDTHLQELDVQGNLLRGHLPINLVSLRNLTSINLARNQLSGHIP------------------------KVYGAKLGSSW 349 (409)
Q Consensus 294 ~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p------------------------~~~~~~~~~~L 349 (409)
+.+++|..|++++|.+. .+|..++.+..|+.|+++.|+|. .+| ..+..+.. |
T Consensus 432 ~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~n--L 507 (565)
T KOG0472|consen 432 SQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRN--L 507 (565)
T ss_pred Hhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhh--c
Confidence 44556666666666655 56666666666666666666554 333 33555544 8
Q ss_pred cEEEccCCcCcccCchhhhcCCCCCeEEcCCCccCCCchhhhc
Q 038636 350 RSLFLDHNFLWGNLPPEFSSSITRIRGSLAKNCLSCPETIRLC 392 (409)
Q Consensus 350 ~~L~L~~N~l~~~~p~~~~~~~~L~~L~l~~N~l~~p~~l~~~ 392 (409)
.+|||.+|.+. .+|+.++++++|+.|+++||+|..|......
T Consensus 508 ~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr~Pr~~iLm 549 (565)
T KOG0472|consen 508 TTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFRQPRHQILM 549 (565)
T ss_pred ceeccCCCchh-hCChhhccccceeEEEecCCccCCCHHHHhc
Confidence 88888888887 7888888888888888888888666554433
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.92 E-value=1.2e-23 Score=227.73 Aligned_cols=283 Identities=18% Similarity=0.189 Sum_probs=182.4
Q ss_pred CcEEEEEccCCCCCCCCccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEec
Q 038636 86 SRITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDL 165 (409)
Q Consensus 86 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l 165 (409)
.+++.|++.++.+.. +|..+ ...+|+.|+++++.+. .++..+..+++|++|+++++...+.+|. ++.+++|++|++
T Consensus 589 ~~Lr~L~~~~~~l~~-lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L 664 (1153)
T PLN03210 589 PKLRLLRWDKYPLRC-MPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKL 664 (1153)
T ss_pred cccEEEEecCCCCCC-CCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEe
Confidence 457778887776543 45555 5688999999998887 5777788899999999988765557774 788899999999
Q ss_pred cCCcCCCCCchhhcCCCCCCeEEeecCcCCCCCCCCCCCCCcCEEeCCCCCCCCCCCCCCCCCcEEEeecccCCCCCccc
Q 038636 166 SHNSLSGIIPAQLSGLRSLTALRLSHNAFSGKIPSLTGAWQLHTLDLDSNQLYGNLPKFPTSLRTLSLSHNLLSGHLSSL 245 (409)
Q Consensus 166 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~l 245 (409)
++|.....+|..+.++++|+.|++++|...+.+|...++++|+.|++++|...+.+|....+|++|++++|.+...+..+
T Consensus 665 ~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~ 744 (1153)
T PLN03210 665 SDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNL 744 (1153)
T ss_pred cCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccc
Confidence 98877778898999999999999998876667777557889999999998777777777788999999988876543322
Q ss_pred CCCCCCCEEEeeCCcC-------CCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchhhhc
Q 038636 246 RNLVNLKSLDLSSNRF-------TGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLV 318 (409)
Q Consensus 246 ~~l~~L~~L~l~~n~l-------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~ 318 (409)
.+++|+.|++.++.. ....+......++|+.|++++|...+..+..++.+++|+.|++++|...+.+|..+
T Consensus 745 -~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~- 822 (1153)
T PLN03210 745 -RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI- 822 (1153)
T ss_pred -cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-
Confidence 345555555544221 11111112223455555555554444344445555555555555554333445443
Q ss_pred CCCCCCEEEccCCeecccCchhHhhhccCCccEEEccCCcCcccCchhhhcCCCCCeEEcCC
Q 038636 319 SLRNLTSINLARNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWGNLPPEFSSSITRIRGSLAK 380 (409)
Q Consensus 319 ~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~l~~ 380 (409)
.+++|+.|++++|.....+|... ++|++|+|++|.++ .+|.++..+++|+.|++++
T Consensus 823 ~L~sL~~L~Ls~c~~L~~~p~~~-----~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~ 878 (1153)
T PLN03210 823 NLESLESLDLSGCSRLRTFPDIS-----TNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNG 878 (1153)
T ss_pred CccccCEEECCCCCccccccccc-----cccCEeECCCCCCc-cChHHHhcCCCCCEEECCC
Confidence 45555555555554333333321 22555555555554 4555555555555555555
No 9
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.92 E-value=6e-24 Score=215.64 Aligned_cols=263 Identities=27% Similarity=0.336 Sum_probs=208.9
Q ss_pred EEEEEccCCCCCCCCccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEeccC
Q 038636 88 ITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSH 167 (409)
Q Consensus 88 v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~ 167 (409)
-..|+++.++++ .+|+.+. ++|+.|++++|+++ .+|. .+++|++|++++|.++ .+|.. .++|+.|++++
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFS 271 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccC
Confidence 356899999998 4677665 48999999999998 4664 3589999999999999 66753 46899999999
Q ss_pred CcCCCCCchhhcCCCCCCeEEeecCcCCCCCCCCCCCCCcCEEeCCCCCCCCCCCCCCCCCcEEEeecccCCCCCcccCC
Q 038636 168 NSLSGIIPAQLSGLRSLTALRLSHNAFSGKIPSLTGAWQLHTLDLDSNQLYGNLPKFPTSLRTLSLSHNLLSGHLSSLRN 247 (409)
Q Consensus 168 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~l~~ 247 (409)
|.++ .+|.. ..+|+.|++++|+++ .+|. ..++|+.|++++|++++ +|.++.+|+.|++++|.+++.+ .+
T Consensus 272 N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~--~p~~L~~LdLS~N~L~~-Lp~lp~~L~~L~Ls~N~L~~LP-~l-- 340 (788)
T PRK15387 272 NPLT-HLPAL---PSGLCKLWIFGNQLT-SLPV--LPPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLP-TL-- 340 (788)
T ss_pred Cchh-hhhhc---hhhcCEEECcCCccc-cccc--cccccceeECCCCcccc-CCCCcccccccccccCcccccc-cc--
Confidence 9987 45543 367889999999988 4554 24689999999999986 4666778999999999998643 22
Q ss_pred CCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchhhhcCCCCCCEEE
Q 038636 248 LVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLTSIN 327 (409)
Q Consensus 248 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 327 (409)
..+|+.|++++|++++ +|.. .++|+.|++++|+++.++ . ...+|+.|++++|.++ .+|.. .++|+.|+
T Consensus 341 p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~LP-~---l~~~L~~LdLs~N~Lt-~LP~l---~s~L~~Ld 408 (788)
T PRK15387 341 PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSLP-A---LPSGLKELIVSGNRLT-SLPVL---PSELKELM 408 (788)
T ss_pred ccccceEecCCCccCC-CCCC---CcccceehhhccccccCc-c---cccccceEEecCCccc-CCCCc---ccCCCEEE
Confidence 2579999999999995 4542 467889999999998743 2 2357999999999999 46643 36899999
Q ss_pred ccCCeecccCchhHhhhccCCccEEEccCCcCcccCchhhhcCCCCCeEEcCCCcc--CCCchhhh
Q 038636 328 LARNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWGNLPPEFSSSITRIRGSLAKNCL--SCPETIRL 391 (409)
Q Consensus 328 L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~l~~N~l--~~p~~l~~ 391 (409)
+++|+++ .+|.... +|+.|++++|+++ .+|..+.++++|+.|++++|+| ..|..+..
T Consensus 409 LS~N~Ls-sIP~l~~-----~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 409 VSGNRLT-SLPMLPS-----GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred ccCCcCC-CCCcchh-----hhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence 9999998 4775432 3889999999998 7999999999999999999999 55665543
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.91 E-value=6.8e-28 Score=218.16 Aligned_cols=268 Identities=25% Similarity=0.323 Sum_probs=219.8
Q ss_pred EEEEEccCCCCCCCCccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEeccC
Q 038636 88 ITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSH 167 (409)
Q Consensus 88 v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~ 167 (409)
+..+.+++|.+.... +.+.++..|.+|++.+|+++ ..|++++.+..++.++.++|+++ .+|+.++.+.+|+.+++++
T Consensus 47 l~~lils~N~l~~l~-~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~ 123 (565)
T KOG0472|consen 47 LQKLILSHNDLEVLR-EDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSS 123 (565)
T ss_pred hhhhhhccCchhhcc-HhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccc
Confidence 456778888876643 45788899999999999887 68888999999999999999988 8888999999999999999
Q ss_pred CcCCCCCchhhcCCCCCCeEEeecCcCCCCCCCCCCCCCcCEEeCCCCCCCCCCCCCCCCCcEEEeecccCCCCCcccCC
Q 038636 168 NSLSGIIPAQLSGLRSLTALRLSHNAFSGKIPSLTGAWQLHTLDLDSNQLYGNLPKFPTSLRTLSLSHNLLSGHLSSLRN 247 (409)
Q Consensus 168 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~l~~ 247 (409)
|.+. .+|++++.+..|..++..+|+++...++++++.+|..+++.+|.+.. .++..-+
T Consensus 124 n~~~-el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~---------------------l~~~~i~ 181 (565)
T KOG0472|consen 124 NELK-ELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKA---------------------LPENHIA 181 (565)
T ss_pred ccee-ecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhh---------------------CCHHHHH
Confidence 9888 67788888888999998888888555557777777777777766553 3343334
Q ss_pred CCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchhhhc-CCCCCCEE
Q 038636 248 LVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLV-SLRNLTSI 326 (409)
Q Consensus 248 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~-~l~~L~~L 326 (409)
++.|++||...|-++ .+|..++.+.+|..|++..|++.. .|.|.++..|++|.++.|.+. .+|.... +++++.+|
T Consensus 182 m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~~--lPef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vL 257 (565)
T KOG0472|consen 182 MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIRF--LPEFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVL 257 (565)
T ss_pred HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhccccc--CCCCCccHHHHHHHhcccHHH-hhHHHHhcccccceee
Confidence 777888888887766 677788888888888898888885 348888999999999999988 7777665 88999999
Q ss_pred EccCCeecccCchhHhhhccCCccEEEccCCcCcccCchhhhcCCCCCeEEcCCCcc-CCCchh
Q 038636 327 NLARNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWGNLPPEFSSSITRIRGSLAKNCL-SCPETI 389 (409)
Q Consensus 327 ~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~l~~N~l-~~p~~l 389 (409)
||..|+++ +.|+.++.+.+ |.+||+++|.++ .+|..++++ .|+.|-+.||++ +|-..+
T Consensus 258 DLRdNklk-e~Pde~clLrs--L~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~i 316 (565)
T KOG0472|consen 258 DLRDNKLK-EVPDEICLLRS--LERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREI 316 (565)
T ss_pred eccccccc-cCchHHHHhhh--hhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHH
Confidence 99999998 88999988877 999999999999 688899999 899999999998 544443
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=6.3e-22 Score=214.51 Aligned_cols=285 Identities=20% Similarity=0.188 Sum_probs=226.6
Q ss_pred CCcEEEEEccCCCCCCCCccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEe
Q 038636 85 TSRITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLD 164 (409)
Q Consensus 85 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~ 164 (409)
..+++.|++.++.+.. ++..+..+++|+.|+|+++...+.+|. ++.+++|++|++++|.....+|..++++++|++|+
T Consensus 610 ~~~L~~L~L~~s~l~~-L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 610 PENLVKLQMQGSKLEK-LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD 687 (1153)
T ss_pred ccCCcEEECcCccccc-cccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence 5689999999998865 567788999999999998875557774 88999999999999987779999999999999999
Q ss_pred ccCCcCCCCCchhhcCCCCCCeEEeecCcCCCCCCCCCCCCCcCEEeCCCCCCCCCCC-CC-CCCCcEEEeecccCC---
Q 038636 165 LSHNSLSGIIPAQLSGLRSLTALRLSHNAFSGKIPSLTGAWQLHTLDLDSNQLYGNLP-KF-PTSLRTLSLSHNLLS--- 239 (409)
Q Consensus 165 l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~-~~~L~~L~l~~n~l~--- 239 (409)
+++|...+.+|..+ ++++|+.|++++|...+.+|.+ ..+|++|++++|.+.. +| .+ .++|++|.+.++...
T Consensus 688 L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~~-lP~~~~l~~L~~L~l~~~~~~~l~ 763 (1153)
T PLN03210 688 MSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIEE-FPSNLRLENLDELILCEMKSEKLW 763 (1153)
T ss_pred CCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc--cCCcCeeecCCCcccc-ccccccccccccccccccchhhcc
Confidence 99987666788766 7899999999999776667653 3579999999998764 44 22 367888888764321
Q ss_pred ----CCCc-ccCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcch
Q 038636 240 ----GHLS-SLRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLP 314 (409)
Q Consensus 240 ----~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p 314 (409)
...+ .....++|+.|++++|...+.+|..++++++|+.|++++|...+..+..+ .+++|+.|++++|.....+|
T Consensus 764 ~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p 842 (1153)
T PLN03210 764 ERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFP 842 (1153)
T ss_pred ccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccc
Confidence 1122 23345789999999998888899999999999999999875433233333 68899999999987665666
Q ss_pred hhhcCCCCCCEEEccCCeecccCchhHhhhccCCccEEEccCCcCcccCchhhhcCCCCCeEEcCCCc
Q 038636 315 INLVSLRNLTSINLARNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWGNLPPEFSSSITRIRGSLAKNC 382 (409)
Q Consensus 315 ~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~l~~N~ 382 (409)
.. .++|+.|+|++|.++ .+|.++..+.. |++|++++|.--..+|..+..+++|+.+++++|.
T Consensus 843 ~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~--L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 843 DI---STNISDLNLSRTGIE-EVPWWIEKFSN--LSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred cc---ccccCEeECCCCCCc-cChHHHhcCCC--CCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 43 368999999999998 78888888866 9999999854444688888888899999998875
No 12
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.89 E-value=6.4e-22 Score=202.02 Aligned_cols=316 Identities=24% Similarity=0.306 Sum_probs=228.2
Q ss_pred CChhhHHHHHHHHhhCCCCCCCCCC--CCCCCCCCCCCCCCCC-----------CceeeeecCCCCCCCCCcEEEEEccC
Q 038636 29 TLATDTQVLRLLKRSIDPNTIPRSS--FLDSWDFKLDPCESSG-----------GQFLGILCSIPSDNSTSRITAIYLDS 95 (409)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~~~~~--~l~~w~~~~~~C~~~~-----------~~w~gv~c~~~~~~~~~~v~~L~L~~ 95 (409)
+.+.+.+.+.++.+.+. .|+.. .-.+|+...+.|-... ..-..|.|.. ..|+.+.+-+
T Consensus 60 ~~~~~~~~~~~~~~~l~---~p~~~~~~~~~~~~~~~fc~~~~~~~~~l~~~~~~~~~tv~~~~------~~vt~l~~~g 130 (754)
T PRK15370 60 ASPEEIKSKFECLRMLA---FPAYADNIQYSRGGADQYCILSENSQEILSIVFNTEGYTVEGGG------KSVTYTRVTE 130 (754)
T ss_pred CCHHHHHHHHHHHHHhc---CCchhhccccccCCCCcccccCCcchhhheeeecCCceEEecCC------Cccccccccc
Confidence 45678888888888883 33321 1234988889996543 1223467753 3455554433
Q ss_pred CCCCC---------------------CCc-------ccc-----CCCCCCcEEEccCCcCCCCCcccccCCCCCcEEecc
Q 038636 96 SGYDG---------------------FLT-------PSI-----GNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLP 142 (409)
Q Consensus 96 ~~l~~---------------------~~~-------~~l-----~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~ 142 (409)
..... ..+ ..+ +-..+.+.|+++++.++ .+|..+. +.|+.|+++
T Consensus 131 ~~~~~~~~~~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls 207 (754)
T PRK15370 131 SEQASSASGSKDAVNYELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLT-TIPACIP--EQITTLILD 207 (754)
T ss_pred ccccccCCCCCChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcC-cCCcccc--cCCcEEEec
Confidence 21100 000 001 11245788999999888 5776654 579999999
Q ss_pred CccCCccCchhccCCCCCCEEeccCCcCCCCCchhhcCCCCCCeEEeecCcCCCCCCC-CCCCCCcCEEeCCCCCCCCCC
Q 038636 143 GNFFTGNIPVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTALRLSHNAFSGKIPS-LTGAWQLHTLDLDSNQLYGNL 221 (409)
Q Consensus 143 ~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~ 221 (409)
+|.++ .+|..+. .+|++|++++|.++ .+|..+. .+|+.|++++|.+. .+|. +. .+|+.|++++|+++. +
T Consensus 208 ~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-L 277 (754)
T PRK15370 208 NNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKISC-L 277 (754)
T ss_pred CCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccCc-c
Confidence 99998 7787664 58999999999988 5676553 47999999999988 5565 43 479999999999985 4
Q ss_pred C-CCCCCCcEEEeecccCCCCCcccCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCC
Q 038636 222 P-KFPTSLRTLSLSHNLLSGHLSSLRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQ 300 (409)
Q Consensus 222 ~-~~~~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~ 300 (409)
| .++++|+.|++++|.+++.+..+. ++|+.|++++|.++. +|..+ .++|+.|++++|.++++ +..+ +++|+
T Consensus 278 P~~l~~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~L-P~~l--~~sL~ 349 (754)
T PRK15370 278 PENLPEELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTSL-PASL--PPELQ 349 (754)
T ss_pred ccccCCCCcEEECCCCccccCcccch--hhHHHHHhcCCcccc-CCccc--cccceeccccCCccccC-Chhh--cCccc
Confidence 5 566789999999999987544443 478999999999984 45444 36899999999999874 3333 36899
Q ss_pred EEEccCCcCCCcchhhhcCCCCCCEEEccCCeecccCchhHhhhccCCccEEEccCCcCcccCchhhhc----CCCCCeE
Q 038636 301 ELDVQGNLLRGHLPINLVSLRNLTSINLARNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWGNLPPEFSS----SITRIRG 376 (409)
Q Consensus 301 ~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~----~~~L~~L 376 (409)
.|++++|+++ .+|..+. ++|+.|+|++|+++ .+|..+.. +|+.|++++|+++ .+|..+.+ ++.+..+
T Consensus 350 ~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~~----sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L 420 (754)
T PRK15370 350 VLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLPA----ALQIMQASRNNLV-RLPESLPHFRGEGPQPTRI 420 (754)
T ss_pred EEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHHH----HHHHHhhccCCcc-cCchhHHHHhhcCCCccEE
Confidence 9999999998 6776664 68999999999998 67776643 2899999999998 66665444 4778999
Q ss_pred EcCCCcc
Q 038636 377 SLAKNCL 383 (409)
Q Consensus 377 ~l~~N~l 383 (409)
++.+|++
T Consensus 421 ~L~~Npl 427 (754)
T PRK15370 421 IVEYNPF 427 (754)
T ss_pred EeeCCCc
Confidence 9999998
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.88 E-value=5.8e-22 Score=201.28 Aligned_cols=248 Identities=28% Similarity=0.317 Sum_probs=200.9
Q ss_pred CCcEEEEEccCCCCCCCCccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEe
Q 038636 85 TSRITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLD 164 (409)
Q Consensus 85 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~ 164 (409)
..+++.|++.+|.++. +|. ..++|++|++++|+++ .+|.. .++|+.|++++|.+. .+|..+ .+|+.|+
T Consensus 221 ~~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~-~Lp~lp---~~L~~L~ 288 (788)
T PRK15387 221 PAHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLT-HLPALP---SGLCKLW 288 (788)
T ss_pred hcCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccCCchh-hhhhch---hhcCEEE
Confidence 3578999999999986 443 3589999999999998 46643 468999999999988 666533 6788999
Q ss_pred ccCCcCCCCCchhhcCCCCCCeEEeecCcCCCCCCCCCCCCCcCEEeCCCCCCCCCCCCCCCCCcEEEeecccCCCCCcc
Q 038636 165 LSHNSLSGIIPAQLSGLRSLTALRLSHNAFSGKIPSLTGAWQLHTLDLDSNQLYGNLPKFPTSLRTLSLSHNLLSGHLSS 244 (409)
Q Consensus 165 l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~ 244 (409)
+++|.++ .+|. ..++|+.|++++|++++ +|.+ ..+|+.|++++|.+++ +|.++.+|+.|++++|++++.++.
T Consensus 289 Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~-Lp~l--p~~L~~L~Ls~N~L~~-LP~lp~~Lq~LdLS~N~Ls~LP~l 360 (788)
T PRK15387 289 IFGNQLT-SLPV---LPPGLQELSVSDNQLAS-LPAL--PSELCKLWAYNNQLTS-LPTLPSGLQELSVSDNQLASLPTL 360 (788)
T ss_pred CcCCccc-cccc---cccccceeECCCCcccc-CCCC--cccccccccccCcccc-ccccccccceEecCCCccCCCCCC
Confidence 9999998 4565 34789999999999985 5542 2468889999999975 677778999999999999975432
Q ss_pred cCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchhhhcCCCCCC
Q 038636 245 LRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLT 324 (409)
Q Consensus 245 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 324 (409)
..+|+.|++++|.+++ +|.. ..+|+.|++++|++++++. . .++|+.|++++|.++ .+|.. ..+|+
T Consensus 361 ---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~LP~-l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~ 425 (788)
T PRK15387 361 ---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTSLPV-L---PSELKELMVSGNRLT-SLPML---PSGLL 425 (788)
T ss_pred ---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccCCCC-c---ccCCCEEEccCCcCC-CCCcc---hhhhh
Confidence 3578889999999984 5643 3679999999999997432 2 368999999999999 57754 34788
Q ss_pred EEEccCCeecccCchhHhhhccCCccEEEccCCcCcccCchhhhcC
Q 038636 325 SINLARNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWGNLPPEFSSS 370 (409)
Q Consensus 325 ~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~~ 370 (409)
.|++++|+++ .+|..++.+.. |+.|+|++|.+++..|..+..+
T Consensus 426 ~L~Ls~NqLt-~LP~sl~~L~~--L~~LdLs~N~Ls~~~~~~L~~l 468 (788)
T PRK15387 426 SLSVYRNQLT-RLPESLIHLSS--ETTVNLEGNPLSERTLQALREI 468 (788)
T ss_pred hhhhccCccc-ccChHHhhccC--CCeEECCCCCCCchHHHHHHHH
Confidence 9999999998 78999998876 9999999999999988877543
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.88 E-value=1.4e-24 Score=214.73 Aligned_cols=242 Identities=30% Similarity=0.320 Sum_probs=167.0
Q ss_pred CCcEEeccCccCCccCchhccCCCCCCEEeccCCcCCCCCchhhcCCCCCCeEEeecCcCCCCCCCCCCCCCcCEEeCCC
Q 038636 135 KLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTALRLSHNAFSGKIPSLTGAWQLHTLDLDS 214 (409)
Q Consensus 135 ~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~ 214 (409)
+|++++++.|+++ .+|++++.+.+|+.++..+|.++ .+|..+....+|+.|.+..|.+....|.....+.|++|+|..
T Consensus 242 nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~ 319 (1081)
T KOG0618|consen 242 NLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQS 319 (1081)
T ss_pred cceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehh
Confidence 4455555555554 44455555555555555555553 445555555555555555555553333344455555566555
Q ss_pred CCCCCCCCCCC----CCCcEEEeecccCCCCCc-ccCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccC
Q 038636 215 NQLYGNLPKFP----TSLRTLSLSHNLLSGHLS-SLRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIE 289 (409)
Q Consensus 215 n~l~~~~~~~~----~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 289 (409)
|++....+.+. .+++.|..+.|.+...+. .=...+.|+.|++.+|.++....+.+.+.++|+.|+|++|++..++
T Consensus 320 N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fp 399 (1081)
T KOG0618|consen 320 NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFP 399 (1081)
T ss_pred ccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCC
Confidence 55543332111 224444444444443332 1233456888999999999888888999999999999999999888
Q ss_pred CCCCCCCCCCCEEEccCCcCCCcchhhhcCCCCCCEEEccCCeecccCchhHhhhccCCccEEEccCCcCcccCchhhhc
Q 038636 290 MTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLTSINLARNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWGNLPPEFSS 369 (409)
Q Consensus 290 ~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~ 369 (409)
...+.+++.|++|+||+|+++ .+|..+..++.|++|...+|++. ..| .+..++. |+.+|++.|.++...-..-..
T Consensus 400 as~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~q--L~~lDlS~N~L~~~~l~~~~p 474 (1081)
T KOG0618|consen 400 ASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQ--LKVLDLSCNNLSEVTLPEALP 474 (1081)
T ss_pred HHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCc--ceEEecccchhhhhhhhhhCC
Confidence 888899999999999999999 88999999999999999999998 777 6777766 999999999998643333333
Q ss_pred CCCCCeEEcCCCcc
Q 038636 370 SITRIRGSLAKNCL 383 (409)
Q Consensus 370 ~~~L~~L~l~~N~l 383 (409)
.++|++||++||..
T Consensus 475 ~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 475 SPNLKYLDLSGNTR 488 (1081)
T ss_pred CcccceeeccCCcc
Confidence 47899999999984
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.87 E-value=3.6e-24 Score=211.93 Aligned_cols=153 Identities=26% Similarity=0.246 Sum_probs=117.4
Q ss_pred CCCcEEEeecccCCCCCcccCCCCCCCEEEeeCCcCCCCCchhhc-------------------------CCCCCcEEEc
Q 038636 226 TSLRTLSLSHNLLSGHLSSLRNLVNLKSLDLSSNRFTGAISHEVL-------------------------TLPQVVSIDV 280 (409)
Q Consensus 226 ~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~-------------------------~l~~L~~L~L 280 (409)
++|+.|.+..|.+.-.++....++.|++|+|..|++....+..+. ..+.|+.|++
T Consensus 287 ~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lyl 366 (1081)
T KOG0618|consen 287 TSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYL 366 (1081)
T ss_pred hhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHH
Confidence 445555555555555555666778888888888877633221111 1235667778
Q ss_pred cCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchhhhcCCCCCCEEEccCCeecccCchhHhhhccCCccEEEccCCcCc
Q 038636 281 SVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLTSINLARNQLSGHIPKVYGAKLGSSWRSLFLDHNFLW 360 (409)
Q Consensus 281 ~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~ 360 (409)
.+|.++....+.+.+..+|+.|+|++|++.......+.+++.|+.|+||+|+++ .+|+.+..+.. |++|...+|.+.
T Consensus 367 anN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~--L~tL~ahsN~l~ 443 (1081)
T KOG0618|consen 367 ANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGR--LHTLRAHSNQLL 443 (1081)
T ss_pred hcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhh--hHHHhhcCCcee
Confidence 888888777778888899999999999998444456788899999999999998 88888888877 999999999998
Q ss_pred ccCchhhhcCCCCCeEEcCCCcc
Q 038636 361 GNLPPEFSSSITRIRGSLAKNCL 383 (409)
Q Consensus 361 ~~~p~~~~~~~~L~~L~l~~N~l 383 (409)
.+| .+.+++.|+.+|++.|.+
T Consensus 444 -~fP-e~~~l~qL~~lDlS~N~L 464 (1081)
T KOG0618|consen 444 -SFP-ELAQLPQLKVLDLSCNNL 464 (1081)
T ss_pred -ech-hhhhcCcceEEecccchh
Confidence 788 788999999999999988
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.86 E-value=4.7e-21 Score=195.65 Aligned_cols=249 Identities=27% Similarity=0.426 Sum_probs=199.6
Q ss_pred CcEEEEEccCCCCCCCCccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEec
Q 038636 86 SRITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDL 165 (409)
Q Consensus 86 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l 165 (409)
.+.+.|++++++++. +|..+. ++|+.|++++|.++ .+|..+. ++|++|++++|.++ .+|..+. .+|+.|++
T Consensus 178 ~~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILGLTT-IPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence 457889999998886 455453 58999999999998 5776654 58999999999998 7787664 58999999
Q ss_pred cCCcCCCCCchhhcCCCCCCeEEeecCcCCCCCCC-CCCCCCcCEEeCCCCCCCCCCCCCCCCCcEEEeecccCCCCCcc
Q 038636 166 SHNSLSGIIPAQLSGLRSLTALRLSHNAFSGKIPS-LTGAWQLHTLDLDSNQLYGNLPKFPTSLRTLSLSHNLLSGHLSS 244 (409)
Q Consensus 166 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~ 244 (409)
++|.+. .+|..+. .+|+.|++++|+++ .+|. +. ++|++|++++|++++..+.++++|+.|++++|.++..+..
T Consensus 249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~ 322 (754)
T PRK15370 249 SINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPET 322 (754)
T ss_pred cCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCcc
Confidence 999998 6787664 58999999999998 4565 43 5899999999999865445667899999999999875444
Q ss_pred cCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchhhhcCCCCCC
Q 038636 245 LRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLT 324 (409)
Q Consensus 245 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 324 (409)
+. ++|+.|++++|.+++ +|..+. ++|+.|++++|+++.+ +..+ .++|+.|++++|.++ .+|..+. ..|+
T Consensus 323 l~--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~L-P~~l--p~~L~~LdLs~N~Lt-~LP~~l~--~sL~ 391 (754)
T PRK15370 323 LP--PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITVL-PETL--PPTITTLDVSRNALT-NLPENLP--AALQ 391 (754)
T ss_pred cc--ccceeccccCCcccc-CChhhc--CcccEEECCCCCCCcC-Chhh--cCCcCEEECCCCcCC-CCCHhHH--HHHH
Confidence 43 689999999999985 666553 7999999999999863 3333 368999999999999 6676665 3799
Q ss_pred EEEccCCeecccCchhHhhhcc--CCccEEEccCCcCcc
Q 038636 325 SINLARNQLSGHIPKVYGAKLG--SSWRSLFLDHNFLWG 361 (409)
Q Consensus 325 ~L~L~~N~l~~~~p~~~~~~~~--~~L~~L~L~~N~l~~ 361 (409)
.|++++|+++ .+|..+..+.. +++..|++.+|.++.
T Consensus 392 ~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 392 IMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred HHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH
Confidence 9999999998 67776654321 348999999999974
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.83 E-value=1.3e-21 Score=184.46 Aligned_cols=271 Identities=24% Similarity=0.231 Sum_probs=157.1
Q ss_pred EEccCCCCC-CCCccccCCCCCCcEEEccCCcCCCC----CcccccCCCCCcEEeccCccCCc------cCchhccCCCC
Q 038636 91 IYLDSSGYD-GFLTPSIGNLTELTTLDLSRNNFRGP----IPDTITDLRKLTTLYLPGNFFTG------NIPVGITRLKK 159 (409)
Q Consensus 91 L~L~~~~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~~~~------~~p~~l~~l~~ 159 (409)
|+|..+.+. +.....+..+++|++|+++++.++.. ++..+...+.|++++++++.+.+ .++..+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 455555555 22333445556677777777766432 44445556666777776665541 23344555666
Q ss_pred CCEEeccCCcCCCCCchhhcCCCC---CCeEEeecCcCCCCCCC-----CCCCCCcCEEeCCCCCCCCCCCCCCCCCcEE
Q 038636 160 LQTLDLSHNSLSGIIPAQLSGLRS---LTALRLSHNAFSGKIPS-----LTGAWQLHTLDLDSNQLYGNLPKFPTSLRTL 231 (409)
Q Consensus 160 L~~L~l~~n~l~~~~p~~l~~l~~---L~~L~L~~n~l~~~~~~-----~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L 231 (409)
|++|++++|.+.+..+..+..+.+ |++|++++|.+.+.... +..+ .++|+.|
T Consensus 83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~--------------------~~~L~~L 142 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDL--------------------PPALEKL 142 (319)
T ss_pred eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhC--------------------CCCceEE
Confidence 666666666665444444443333 66666666555421100 2222 1345555
Q ss_pred EeecccCCCCC----c-ccCCCCCCCEEEeeCCcCCCC----CchhhcCCCCCcEEEccCCcCCccCCC----CCCCCCC
Q 038636 232 SLSHNLLSGHL----S-SLRNLVNLKSLDLSSNRFTGA----ISHEVLTLPQVVSIDVSVNRLTAIEMT----TLSGDTH 298 (409)
Q Consensus 232 ~l~~n~l~~~~----~-~l~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~~~~ 298 (409)
++++|.+++.. . .+..+++|++|++++|.+++. ++..+...++|++|++++|.+++.... .+..+++
T Consensus 143 ~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~ 222 (319)
T cd00116 143 VLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKS 222 (319)
T ss_pred EcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCC
Confidence 55555554211 1 445566788888888877742 233445566888888888877653322 3456678
Q ss_pred CCEEEccCCcCCCcchhhhcC-----CCCCCEEEccCCeecc----cCchhHhhhccCCccEEEccCCcCccc----Cch
Q 038636 299 LQELDVQGNLLRGHLPINLVS-----LRNLTSINLARNQLSG----HIPKVYGAKLGSSWRSLFLDHNFLWGN----LPP 365 (409)
Q Consensus 299 L~~L~Ls~n~l~~~~p~~l~~-----l~~L~~L~L~~N~l~~----~~p~~~~~~~~~~L~~L~L~~N~l~~~----~p~ 365 (409)
|++|++++|.+++.....+.. .+.|+.|++++|.++. .+...+.... +|+++++++|.++.. +..
T Consensus 223 L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~--~L~~l~l~~N~l~~~~~~~~~~ 300 (319)
T cd00116 223 LEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKE--SLLELDLRGNKFGEEGAQLLAE 300 (319)
T ss_pred CCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCC--CccEEECCCCCCcHHHHHHHHH
Confidence 888888888887543333322 3688888888888863 2233333333 488888888888754 444
Q ss_pred hhhcC-CCCCeEEcCCCcc
Q 038636 366 EFSSS-ITRIRGSLAKNCL 383 (409)
Q Consensus 366 ~~~~~-~~L~~L~l~~N~l 383 (409)
.+... +.++++++.+|+|
T Consensus 301 ~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 301 SLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHhhcCCchhhcccCCCCC
Confidence 45444 5688888888865
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.81 E-value=9.7e-22 Score=178.13 Aligned_cols=270 Identities=26% Similarity=0.298 Sum_probs=178.2
Q ss_pred CCcEEEEEccCCCCCCCCccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccC-ccCCccCc-hhccCCCCCCE
Q 038636 85 TSRITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPG-NFFTGNIP-VGITRLKKLQT 162 (409)
Q Consensus 85 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~-n~~~~~~p-~~l~~l~~L~~ 162 (409)
+...++|+|..|+++...+.+|+.+++||.|||++|.|+.+-|++|.+++.|..|.+.+ |+|+ .+| ..|++|..|+.
T Consensus 66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slqr 144 (498)
T KOG4237|consen 66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQR 144 (498)
T ss_pred CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHHH
Confidence 56789999999999999999999999999999999999999999999999998888877 8998 555 56899999999
Q ss_pred EeccCCcCCCCCchhhcCCCCCCeEEeecCcCCCCCCC--CCCCCCcCEEeCCCCCCCCC--CCCC-------------C
Q 038636 163 LDLSHNSLSGIIPAQLSGLRSLTALRLSHNAFSGKIPS--LTGAWQLHTLDLDSNQLYGN--LPKF-------------P 225 (409)
Q Consensus 163 L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~-------------~ 225 (409)
|.+.-|.+.-...+.|..+++|..|.+.+|.+. .++. +..+..++++.+..|.+... +|.. .
T Consensus 145 LllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsga 223 (498)
T KOG4237|consen 145 LLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGA 223 (498)
T ss_pred HhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccc
Confidence 999999998777888999999999999999987 4443 88888999999988874211 1100 0
Q ss_pred CCCcEEEeecccCCCCCc-ccCCC-CCCC-EEEeeCCcCCCCC-chhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCE
Q 038636 226 TSLRTLSLSHNLLSGHLS-SLRNL-VNLK-SLDLSSNRFTGAI-SHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQE 301 (409)
Q Consensus 226 ~~L~~L~l~~n~l~~~~~-~l~~l-~~L~-~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~ 301 (409)
....-..+.+.++....+ .+... ..+. .+. +.+...+.- ...|..+++|+.|+|++|+++++...+|.....+++
T Consensus 224 rc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~-~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~e 302 (498)
T KOG4237|consen 224 RCVSPYRLYYKRINQEDARKFLCSLESLPSRLS-SEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQE 302 (498)
T ss_pred eecchHHHHHHHhcccchhhhhhhHHhHHHhhc-cccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhh
Confidence 111111222222222222 11111 1110 111 111111122 223555666666666666666655556666666666
Q ss_pred EEccCCcCCCcchhhhcCCCCCCEEEccCCeecccCchhHhhhccCCccEEEccCCcC
Q 038636 302 LDVQGNLLRGHLPINLVSLRNLTSINLARNQLSGHIPKVYGAKLGSSWRSLFLDHNFL 359 (409)
Q Consensus 302 L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l 359 (409)
|.|..|++...--..|.++..|+.|+|++|+|+..-|..|..... |.+|.|-.|.+
T Consensus 303 L~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~--l~~l~l~~Np~ 358 (498)
T KOG4237|consen 303 LYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFS--LSTLNLLSNPF 358 (498)
T ss_pred hhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccce--eeeeehccCcc
Confidence 666666665433444555666666666666666555555555544 66666555544
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.80 E-value=4.6e-21 Score=180.72 Aligned_cols=258 Identities=22% Similarity=0.262 Sum_probs=177.3
Q ss_pred CcEEEEEccCCCCCCC----CccccCCCCCCcEEEccCCcCCC------CCcccccCCCCCcEEeccCccCCccCchhcc
Q 038636 86 SRITAIYLDSSGYDGF----LTPSIGNLTELTTLDLSRNNFRG------PIPDTITDLRKLTTLYLPGNFFTGNIPVGIT 155 (409)
Q Consensus 86 ~~v~~L~L~~~~l~~~----~~~~l~~l~~L~~L~L~~n~l~~------~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~ 155 (409)
..++.+++.++.++.. ++..+...+.+++|+++++.+.+ .++..+..+++|++|++++|.+.+..+..+.
T Consensus 23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 102 (319)
T cd00116 23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE 102 (319)
T ss_pred hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence 4589999999998643 55567788899999999998762 2445678899999999999999877777666
Q ss_pred CCCC---CCEEeccCCcCCC----CCchhhcCC-CCCCeEEeecCcCCCCCCC-----CCCCCCcCEEeCCCCCCCCCCC
Q 038636 156 RLKK---LQTLDLSHNSLSG----IIPAQLSGL-RSLTALRLSHNAFSGKIPS-----LTGAWQLHTLDLDSNQLYGNLP 222 (409)
Q Consensus 156 ~l~~---L~~L~l~~n~l~~----~~p~~l~~l-~~L~~L~L~~n~l~~~~~~-----~~~l~~L~~L~l~~n~l~~~~~ 222 (409)
.+.+ |++|++++|.+.+ .+...+..+ ++|+.|++++|.+++.... +..+.+|++|++++|.+++...
T Consensus 103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 182 (319)
T cd00116 103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGI 182 (319)
T ss_pred HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHH
Confidence 6655 9999999999874 233456677 8999999999998853221 4555677788887777653211
Q ss_pred CCCCCCcEEEeecccCCCCCcccCCCCCCCEEEeeCCcCCCC----CchhhcCCCCCcEEEccCCcCCccCCCCC-----
Q 038636 223 KFPTSLRTLSLSHNLLSGHLSSLRNLVNLKSLDLSSNRFTGA----ISHEVLTLPQVVSIDVSVNRLTAIEMTTL----- 293 (409)
Q Consensus 223 ~~~~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----- 293 (409)
. .....+...++|+.|++++|.+++. +...+..+++|++|++++|.+++.....+
T Consensus 183 ~----------------~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~ 246 (319)
T cd00116 183 R----------------ALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALL 246 (319)
T ss_pred H----------------HHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHh
Confidence 0 0001233445677777777766533 23345566778888888877765322222
Q ss_pred CCCCCCCEEEccCCcCCC----cchhhhcCCCCCCEEEccCCeecccCchhHhhh---ccCCccEEEccCCcC
Q 038636 294 SGDTHLQELDVQGNLLRG----HLPINLVSLRNLTSINLARNQLSGHIPKVYGAK---LGSSWRSLFLDHNFL 359 (409)
Q Consensus 294 ~~~~~L~~L~Ls~n~l~~----~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~---~~~~L~~L~L~~N~l 359 (409)
...+.|++|++++|.+++ .+...+..+++|+++++++|.++......+... ..+.++++++.+|.+
T Consensus 247 ~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 247 SPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred ccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 124688888888888872 344556667889999999999986644433322 113588888887753
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.74 E-value=2.6e-20 Score=168.96 Aligned_cols=272 Identities=20% Similarity=0.201 Sum_probs=201.4
Q ss_pred CCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEeccC-CcCCCCCchhhcCCCCCCeEEe
Q 038636 111 ELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSH-NSLSGIIPAQLSGLRSLTALRL 189 (409)
Q Consensus 111 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~-n~l~~~~p~~l~~l~~L~~L~L 189 (409)
.-+.++|..|+|+...|.+|+.+++|+.|||++|.|+..-|++|..+++|..|.+-+ |.++......|+++..|+.|.+
T Consensus 68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 456789999999987788999999999999999999999999999999988877766 8898665567899999999999
Q ss_pred ecCcCCCCCCC-CCCCCCcCEEeCCCCCCCCCCC-C--CCCCCcEEEeecccCCCC------------Cc-ccCCCCCCC
Q 038636 190 SHNAFSGKIPS-LTGAWQLHTLDLDSNQLYGNLP-K--FPTSLRTLSLSHNLLSGH------------LS-SLRNLVNLK 252 (409)
Q Consensus 190 ~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~--~~~~L~~L~l~~n~l~~~------------~~-~l~~l~~L~ 252 (409)
.-|++.-.... +..+++|..|.+.+|.+....- . -...++.+.+..|.+... .+ .++...-..
T Consensus 148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~ 227 (498)
T KOG4237|consen 148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS 227 (498)
T ss_pred ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence 99998854444 8889999999999887653222 1 125667777776663211 11 222222223
Q ss_pred EEEeeCCcCCCCCchhhcCCCCCcEE--Ec-cCCcCCcc-CCCCCCCCCCCCEEEccCCcCCCcchhhhcCCCCCCEEEc
Q 038636 253 SLDLSSNRFTGAISHEVLTLPQVVSI--DV-SVNRLTAI-EMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLTSINL 328 (409)
Q Consensus 253 ~L~l~~n~l~~~~~~~~~~l~~L~~L--~L-~~n~l~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L 328 (409)
-..+.+.++...-+..|.. .++.+ .+ +.+...++ +...|..+++|+.|+|++|++++.-+.+|.+...++.|.|
T Consensus 228 p~rl~~~Ri~q~~a~kf~c--~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L 305 (498)
T KOG4237|consen 228 PYRLYYKRINQEDARKFLC--SLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL 305 (498)
T ss_pred hHHHHHHHhcccchhhhhh--hHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence 3333333443333333221 12222 11 22222221 2225788999999999999999999999999999999999
Q ss_pred cCCeecccCchhHhhhccCCccEEEccCCcCcccCchhhhcCCCCCeEEcCCCccCCC
Q 038636 329 ARNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWGNLPPEFSSSITRIRGSLAKNCLSCP 386 (409)
Q Consensus 329 ~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~l~~N~l~~p 386 (409)
..|++...--..|..+.. |+.|+|.+|+|+..-|..|..+.+|..|++-.|+|.|-
T Consensus 306 ~~N~l~~v~~~~f~~ls~--L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~Cn 361 (498)
T KOG4237|consen 306 TRNKLEFVSSGMFQGLSG--LKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCN 361 (498)
T ss_pred CcchHHHHHHHhhhcccc--ceeeeecCCeeEEEecccccccceeeeeehccCcccCc
Confidence 999998666666777766 99999999999988899999999999999999999443
No 21
>PLN03150 hypothetical protein; Provisional
Probab=99.71 E-value=1.4e-16 Score=162.03 Aligned_cols=165 Identities=33% Similarity=0.530 Sum_probs=134.0
Q ss_pred CCChhhHHHHHHHHhhCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeecCCCCCCCCCcEEEEEccCCCCCCCCccccC
Q 038636 28 ATLATDTQVLRLLKRSIDPNTIPRSSFLDSWDFKLDPCESSGGQFLGILCSIPSDNSTSRITAIYLDSSGYDGFLTPSIG 107 (409)
Q Consensus 28 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~w~~~~~~C~~~~~~w~gv~c~~~~~~~~~~v~~L~L~~~~l~~~~~~~l~ 107 (409)
.+.+.|.+||..+|+.+.. +. ..+|. +++|......|.||.|..........|+.|+|+++.+.|.+|..++
T Consensus 368 ~t~~~~~~aL~~~k~~~~~---~~---~~~W~--g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~ 439 (623)
T PLN03150 368 KTLLEEVSALQTLKSSLGL---PL---RFGWN--GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDIS 439 (623)
T ss_pred ccCchHHHHHHHHHHhcCC---cc---cCCCC--CCCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHh
Confidence 4456789999999998842 11 13785 4677532234899999642111124699999999999999999999
Q ss_pred CCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEeccCCcCCCCCchhhcCC-CCCCe
Q 038636 108 NLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHNSLSGIIPAQLSGL-RSLTA 186 (409)
Q Consensus 108 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l-~~L~~ 186 (409)
.+++|+.|+|++|.+.|.+|..++.+++|+.|+|++|.++|.+|..++++++|++|++++|.++|.+|..+... .++..
T Consensus 440 ~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~ 519 (623)
T PLN03150 440 KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRAS 519 (623)
T ss_pred CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988764 46778
Q ss_pred EEeecCcCCCCCCC
Q 038636 187 LRLSHNAFSGKIPS 200 (409)
Q Consensus 187 L~L~~n~l~~~~~~ 200 (409)
+++.+|......|.
T Consensus 520 l~~~~N~~lc~~p~ 533 (623)
T PLN03150 520 FNFTDNAGLCGIPG 533 (623)
T ss_pred EEecCCccccCCCC
Confidence 88888865444443
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.67 E-value=1.1e-18 Score=141.44 Aligned_cols=178 Identities=26% Similarity=0.324 Sum_probs=105.5
Q ss_pred cCCCCCCeEEeecCcCCCCCCCCCCCCCcCEEeCCCCCCCCCCCCCCCCCcEEEeecccCCCCCcccCCCCCCCEEEeeC
Q 038636 179 SGLRSLTALRLSHNAFSGKIPSLTGAWQLHTLDLDSNQLYGNLPKFPTSLRTLSLSHNLLSGHLSSLRNLVNLKSLDLSS 258 (409)
Q Consensus 179 ~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~ 258 (409)
.++.+++.|.+++|+++...|.+..+.+|+.|++.+|+++ ..++.++.+++|+.|++.-
T Consensus 30 f~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie---------------------~lp~~issl~klr~lnvgm 88 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE---------------------ELPTSISSLPKLRILNVGM 88 (264)
T ss_pred cchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh---------------------hcChhhhhchhhhheecch
Confidence 3555666666666666655555666666666666655554 3333555556666666666
Q ss_pred CcCCCCCchhhcCCCCCcEEEccCCcCCcc-CCCCCCCCCCCCEEEccCCcCCCcchhhhcCCCCCCEEEccCCeecccC
Q 038636 259 NRFTGAISHEVLTLPQVVSIDVSVNRLTAI-EMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLTSINLARNQLSGHI 337 (409)
Q Consensus 259 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 337 (409)
|++. ..|..|+.+|.|+.||+.+|++..- .+..|-.++.|+.|.+++|.+. .+|..++++++|+.|.+..|.+. .+
T Consensus 89 nrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~l 165 (264)
T KOG0617|consen 89 NRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SL 165 (264)
T ss_pred hhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hC
Confidence 6555 5556666666666666666655442 2234444555666666666666 56666666666666666666665 56
Q ss_pred chhHhhhccCCccEEEccCCcCcccCchhhhcCCC---CCeEEcCCCcc
Q 038636 338 PKVYGAKLGSSWRSLFLDHNFLWGNLPPEFSSSIT---RIRGSLAKNCL 383 (409)
Q Consensus 338 p~~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~~~~---L~~L~l~~N~l 383 (409)
|..++.+.. |++|.+.+|+++ .+|+.++++.- -+...+..|+|
T Consensus 166 pkeig~lt~--lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPw 211 (264)
T KOG0617|consen 166 PKEIGDLTR--LRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPW 211 (264)
T ss_pred cHHHHHHHH--HHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCC
Confidence 666666655 666666666666 56665555432 23445566666
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.67 E-value=1.5e-18 Score=140.75 Aligned_cols=164 Identities=26% Similarity=0.315 Sum_probs=147.9
Q ss_pred CCCcEEEeecccCCCCCcccCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEcc
Q 038636 226 TSLRTLSLSHNLLSGHLSSLRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQ 305 (409)
Q Consensus 226 ~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls 305 (409)
..++.|.+++|.++..+|.+..+.+|+.|++++|+++ ..|..+..+++|+.|+++-|++.. .+..|+.++.|+.||++
T Consensus 33 s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~~-lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLNI-LPRGFGSFPALEVLDLT 110 (264)
T ss_pred hhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhhc-CccccCCCchhhhhhcc
Confidence 4566777888888888889999999999999999998 778899999999999999999986 77889999999999999
Q ss_pred CCcCCC-cchhhhcCCCCCCEEEccCCeecccCchhHhhhccCCccEEEccCCcCcccCchhhhcCCCCCeEEcCCCcc-
Q 038636 306 GNLLRG-HLPINLVSLRNLTSINLARNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWGNLPPEFSSSITRIRGSLAKNCL- 383 (409)
Q Consensus 306 ~n~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~l~~N~l- 383 (409)
+|++.. .+|..|..+..|+.|+|+.|.+. .+|..++++.. |+.|.+.+|.+- ++|..++.+++|+.|.+.+|++
T Consensus 111 ynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~--lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 111 YNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTN--LQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred ccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcc--eeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee
Confidence 999974 57888889999999999999998 88888999977 999999999998 8999999999999999999999
Q ss_pred CCCchhhhccCC
Q 038636 384 SCPETIRLCHGG 395 (409)
Q Consensus 384 ~~p~~l~~~~~~ 395 (409)
.+|+.+..+.-.
T Consensus 187 vlppel~~l~l~ 198 (264)
T KOG0617|consen 187 VLPPELANLDLV 198 (264)
T ss_pred ecChhhhhhhhh
Confidence 899999876543
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.37 E-value=2.5e-14 Score=135.92 Aligned_cols=150 Identities=30% Similarity=0.328 Sum_probs=128.3
Q ss_pred CCCcEEEeecccCCCCCcccCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEcc
Q 038636 226 TSLRTLSLSHNLLSGHLSSLRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQ 305 (409)
Q Consensus 226 ~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls 305 (409)
-.|+.+.++.|.+...+..+.++..|++++++.|+++ ..|..++.+| |+.|-+++|+++. .+..++....|..||.+
T Consensus 98 ~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~~-lp~~ig~~~tl~~ld~s 174 (722)
T KOG0532|consen 98 VSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLTS-LPEEIGLLPTLAHLDVS 174 (722)
T ss_pred HHHHHHHHHhccceecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCcccc-CCcccccchhHHHhhhh
Confidence 3455555666666655558888999999999999998 6777888775 8999999999987 56677788899999999
Q ss_pred CCcCCCcchhhhcCCCCCCEEEccCCeecccCchhHhhhccCCccEEEccCCcCcccCchhhhcCCCCCeEEcCCCccC
Q 038636 306 GNLLRGHLPINLVSLRNLTSINLARNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWGNLPPEFSSSITRIRGSLAKNCLS 384 (409)
Q Consensus 306 ~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~l~~N~l~ 384 (409)
.|++. .+|..++.+.+|+.|++..|++. .+|..++.++ |.+||++.|+++ .+|-+|.+++.|++|-|.+|++.
T Consensus 175 ~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp---Li~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 175 KNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP---LIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred hhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc---eeeeecccCcee-ecchhhhhhhhheeeeeccCCCC
Confidence 99999 78889999999999999999998 7788888665 999999999998 89999999999999999999993
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.35 E-value=1e-12 Score=127.68 Aligned_cols=196 Identities=37% Similarity=0.544 Sum_probs=133.1
Q ss_pred EEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCC-CCCEEeccCCcCCCCCchhhcCCCCCCeEEeecC
Q 038636 114 TLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLK-KLQTLDLSHNSLSGIIPAQLSGLRSLTALRLSHN 192 (409)
Q Consensus 114 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~-~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n 192 (409)
.+++..+.+... ...+..++.++.|++.+|.++ .+|.....+. +|++|++++|.+. .+|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 466666666422 233555677788888888777 6666666664 7888888888776 45556777788888888888
Q ss_pred cCCCCCCC-CCCCCCcCEEeCCCCCCCCCCCC--CCCCCcEEEeecccCCCCCcccCCCCCCCEEEeeCCcCCCCCchhh
Q 038636 193 AFSGKIPS-LTGAWQLHTLDLDSNQLYGNLPK--FPTSLRTLSLSHNLLSGHLSSLRNLVNLKSLDLSSNRFTGAISHEV 269 (409)
Q Consensus 193 ~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~ 269 (409)
++. .+|. .+..+.|+.|++++|++....+. ....|+++.+++|.+...+..+.++.++..+.+.+|++.. .+..+
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~ 251 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLED-LPESI 251 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeee-ccchh
Confidence 777 3444 44777777788877777654443 4455777777777544444466777777777777777663 35666
Q ss_pred cCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchhh
Q 038636 270 LTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPIN 316 (409)
Q Consensus 270 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~ 316 (409)
..+++++.|++++|.++.+.. +....+++.|++++|.+....|..
T Consensus 252 ~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 252 GNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred ccccccceecccccccccccc--ccccCccCEEeccCccccccchhh
Confidence 777778888888887776333 667777888888877777555543
No 26
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.35 E-value=2.9e-14 Score=128.17 Aligned_cols=88 Identities=33% Similarity=0.434 Sum_probs=45.1
Q ss_pred cCCCCCCcEEEccCCcCCCC----CcccccCCCCCcEEeccCccCCc----cCchh-------ccCCCCCCEEeccCCcC
Q 038636 106 IGNLTELTTLDLSRNNFRGP----IPDTITDLRKLTTLYLPGNFFTG----NIPVG-------ITRLKKLQTLDLSHNSL 170 (409)
Q Consensus 106 l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~~~~----~~p~~-------l~~l~~L~~L~l~~n~l 170 (409)
+..+..++.++|++|.+... +...+.+.++|+..++++- ++| .+|+. +-..++|++|+||.|-+
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 44556666666666666432 3334455566666666542 222 33332 23445666666666665
Q ss_pred CCCCchh----hcCCCCCCeEEeecCcC
Q 038636 171 SGIIPAQ----LSGLRSLTALRLSHNAF 194 (409)
Q Consensus 171 ~~~~p~~----l~~l~~L~~L~L~~n~l 194 (409)
....+.. +.++..|++|+|.+|.+
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Gl 132 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGL 132 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCC
Confidence 4333322 23455555555555543
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.32 E-value=2.4e-12 Score=125.09 Aligned_cols=198 Identities=33% Similarity=0.417 Sum_probs=129.4
Q ss_pred CEEeccCCcCCCCCchhhcCCCCCCeEEeecCcCCCCCCCCCCCC-CcCEEeCCCCCCCCCC-C-CCCCCCcEEEeeccc
Q 038636 161 QTLDLSHNSLSGIIPAQLSGLRSLTALRLSHNAFSGKIPSLTGAW-QLHTLDLDSNQLYGNL-P-KFPTSLRTLSLSHNL 237 (409)
Q Consensus 161 ~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~-~L~~L~l~~n~l~~~~-~-~~~~~L~~L~l~~n~ 237 (409)
..+++..|.+... ...+..++.++.|++.+|.++...+...... +|+.|++++|.+.... + ...++|+.|++++|+
T Consensus 96 ~~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 96 PSLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred ceeeccccccccC-chhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch
Confidence 3577777776433 3445566778888888888874444455553 7888888888877542 2 455777777777777
Q ss_pred CCCCCcccCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchhhh
Q 038636 238 LSGHLSSLRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINL 317 (409)
Q Consensus 238 l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l 317 (409)
++...+..+..+.|+.|++++|++. .+|..+.....|+++.+++|.+.. .+..+..+.++..+.+.+|++. .++..+
T Consensus 175 l~~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~-~~~~~~~~~~l~~l~l~~n~~~-~~~~~~ 251 (394)
T COG4886 175 LSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIE-LLSSLSNLKNLSGLELSNNKLE-DLPESI 251 (394)
T ss_pred hhhhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCccee-cchhhhhcccccccccCCceee-eccchh
Confidence 7765555446777777777777777 455554455557777777774333 4445566667777777777766 335666
Q ss_pred cCCCCCCEEEccCCeecccCchhHhhhccCCccEEEccCCcCcccCchh
Q 038636 318 VSLRNLTSINLARNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWGNLPPE 366 (409)
Q Consensus 318 ~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~p~~ 366 (409)
+.+++++.|++++|+++ .++. ++.... ++.|++++|.++...|..
T Consensus 252 ~~l~~l~~L~~s~n~i~-~i~~-~~~~~~--l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 252 GNLSNLETLDLSNNQIS-SISS-LGSLTN--LRELDLSGNSLSNALPLI 296 (394)
T ss_pred ccccccceecccccccc-cccc-ccccCc--cCEEeccCccccccchhh
Confidence 77777777777777777 3333 455544 777777777777555543
No 28
>PLN03150 hypothetical protein; Provisional
Probab=99.25 E-value=1.8e-11 Score=124.91 Aligned_cols=102 Identities=35% Similarity=0.538 Sum_probs=55.2
Q ss_pred CcEEeccCccCCccCchhccCCCCCCEEeccCCcCCCCCchhhcCCCCCCeEEeecCcCCCCCCC-CCCCCCcCEEeCCC
Q 038636 136 LTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTALRLSHNAFSGKIPS-LTGAWQLHTLDLDS 214 (409)
Q Consensus 136 L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~-~~~l~~L~~L~l~~ 214 (409)
++.|+|++|.+.|.+|..++++++|++|+|++|.+.|.+|..++.+++|+.|+|++|+++|.+|. ++.+++|++|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 44555555555555555555555555555555555555555555555555555555555555554 55555555555555
Q ss_pred CCCCCCCCCC----CCCCcEEEeeccc
Q 038636 215 NQLYGNLPKF----PTSLRTLSLSHNL 237 (409)
Q Consensus 215 n~l~~~~~~~----~~~L~~L~l~~n~ 237 (409)
|.++|.+|.. ..++..+++.+|.
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCc
Confidence 5555555521 1234455555554
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.22 E-value=3e-12 Score=113.16 Aligned_cols=136 Identities=25% Similarity=0.215 Sum_probs=104.2
Q ss_pred ccCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchhhhcCCCCC
Q 038636 244 SLRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNL 323 (409)
Q Consensus 244 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L 323 (409)
.+..++.|+++|+++|.++ .+.++..-.|.++.|++++|.+.. ...+..+++|+.|||++|.++ .+..|-.++-++
T Consensus 279 ~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~--v~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNI 354 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT--VQNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNI 354 (490)
T ss_pred ecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceee--ehhhhhcccceEeecccchhH-hhhhhHhhhcCE
Confidence 5566778888999999887 556667778899999999999885 344778889999999999888 555566677888
Q ss_pred CEEEccCCeecccCchhHhhhccCCccEEEccCCcCccc-CchhhhcCCCCCeEEcCCCcc-CCCc
Q 038636 324 TSINLARNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWGN-LPPEFSSSITRIRGSLAKNCL-SCPE 387 (409)
Q Consensus 324 ~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~-~p~~~~~~~~L~~L~l~~N~l-~~p~ 387 (409)
+.|.|++|.+... ..+..+-+ |..||+++|++..- --..+++++.|+.+.+.+|++ .+|+
T Consensus 355 KtL~La~N~iE~L--SGL~KLYS--LvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 355 KTLKLAQNKIETL--SGLRKLYS--LVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred eeeehhhhhHhhh--hhhHhhhh--heeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 9999999987522 23555555 88999999988631 124688888899999999998 5554
No 30
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.20 E-value=2e-12 Score=116.51 Aligned_cols=239 Identities=21% Similarity=0.266 Sum_probs=150.9
Q ss_pred CCcEEEEEccCCCCCC----CCccccCCCCCCcEEEccCCc---CCCCCccc-------ccCCCCCcEEeccCccCCccC
Q 038636 85 TSRITAIYLDSSGYDG----FLTPSIGNLTELTTLDLSRNN---FRGPIPDT-------ITDLRKLTTLYLPGNFFTGNI 150 (409)
Q Consensus 85 ~~~v~~L~L~~~~l~~----~~~~~l~~l~~L~~L~L~~n~---l~~~~p~~-------l~~l~~L~~L~L~~n~~~~~~ 150 (409)
...++.|+|++|.+.. .+.+.+.+.+.|+..++++-. ....+|+. +...++|++|+|++|.+.-.-
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 4578999999998864 244567788899999998642 22234543 456789999999999987555
Q ss_pred chh----ccCCCCCCEEeccCCcCCCCCchhhcCCCCCCeEEeecCcCCCCCCCCCCCCCcCEEeCCCCCCCCCCC----
Q 038636 151 PVG----ITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTALRLSHNAFSGKIPSLTGAWQLHTLDLDSNQLYGNLP---- 222 (409)
Q Consensus 151 p~~----l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~---- 222 (409)
+.. +..+..|++|.|.+|.+.-.--..++. .|.+|. .++. ...-++|+++...+|.+...-.
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--~~kk------~~~~~~Lrv~i~~rNrlen~ga~~~A 178 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA--VNKK------AASKPKLRVFICGRNRLENGGATALA 178 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--HHhc------cCCCcceEEEEeeccccccccHHHHH
Confidence 544 467899999999999875221112211 122222 1111 2223456666666666543221
Q ss_pred ---CCCCCCcEEEeecccCCCCC----c-ccCCCCCCCEEEeeCCcCCCC----CchhhcCCCCCcEEEccCCcCCccCC
Q 038636 223 ---KFPTSLRTLSLSHNLLSGHL----S-SLRNLVNLKSLDLSSNRFTGA----ISHEVLTLPQVVSIDVSVNRLTAIEM 290 (409)
Q Consensus 223 ---~~~~~L~~L~l~~n~l~~~~----~-~l~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~ 290 (409)
...+.|+.+.+..|.+...- . .+..+++|+.|||.+|.|+.. +...+..+++|+.|++++|.+.....
T Consensus 179 ~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga 258 (382)
T KOG1909|consen 179 EAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGA 258 (382)
T ss_pred HHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccH
Confidence 11256677777776654211 1 567788888888888877632 33455667788888888887765433
Q ss_pred CCC-----CCCCCCCEEEccCCcCCCc----chhhhcCCCCCCEEEccCCee
Q 038636 291 TTL-----SGDTHLQELDVQGNLLRGH----LPINLVSLRNLTSINLARNQL 333 (409)
Q Consensus 291 ~~~-----~~~~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~N~l 333 (409)
..+ ...++|+.|.+.+|.++-. +...+...+.|+.|+|++|.+
T Consensus 259 ~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 259 IAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 322 3366777788877777622 333455567777777777777
No 31
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.19 E-value=9.8e-12 Score=129.70 Aligned_cols=299 Identities=22% Similarity=0.218 Sum_probs=177.4
Q ss_pred CCcEEEEEccCCC--CCCCCccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCE
Q 038636 85 TSRITAIYLDSSG--YDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQT 162 (409)
Q Consensus 85 ~~~v~~L~L~~~~--l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~ 162 (409)
.+.+++|-+..+. +.......|..++.|++|||++|.--+.+|..++.+-+||+|+++++.+. .+|..++++.+|.+
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIY 622 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhe
Confidence 3467888888775 44444445788999999999988766789999999999999999999988 89999999999999
Q ss_pred EeccCCcCCCCCchhhcCCCCCCeEEeecCcCCCCCCC---CCCCCCcCEEeCCCCCCCCCCC-----CCCCCCcEEEee
Q 038636 163 LDLSHNSLSGIIPAQLSGLRSLTALRLSHNAFSGKIPS---LTGAWQLHTLDLDSNQLYGNLP-----KFPTSLRTLSLS 234 (409)
Q Consensus 163 L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~---~~~l~~L~~L~l~~n~l~~~~~-----~~~~~L~~L~l~ 234 (409)
|++..+.....+|.....+.+|++|.+.........-. +..+..|+.+..........-. .+....+.+.+.
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~ 702 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIE 702 (889)
T ss_pred eccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhc
Confidence 99998877666677777799999999877653322222 3344444444443222100000 111223334433
Q ss_pred cccCCCCCcccCCCCCCCEEEeeCCcCCCCCchhhcC------CCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCc
Q 038636 235 HNLLSGHLSSLRNLVNLKSLDLSSNRFTGAISHEVLT------LPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNL 308 (409)
Q Consensus 235 ~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~------l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~ 308 (409)
++........+..+.+|+.|.+.++.+.......... ++++..+...++.... .+......++|+.|.+..+.
T Consensus 703 ~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r-~l~~~~f~~~L~~l~l~~~~ 781 (889)
T KOG4658|consen 703 GCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLR-DLTWLLFAPHLTSLSLVSCR 781 (889)
T ss_pred ccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccccc-ccchhhccCcccEEEEeccc
Confidence 4444444557788888999999888876433222111 1222222222222111 12222456788899988887
Q ss_pred CCCcchhhhcCCCCCCEEEccCCeeccc-CchhHhhhccCCccEEEccCCcCcc----cCchhhhcCCCCCeEEcCCC-c
Q 038636 309 LRGHLPINLVSLRNLTSINLARNQLSGH-IPKVYGAKLGSSWRSLFLDHNFLWG----NLPPEFSSSITRIRGSLAKN-C 382 (409)
Q Consensus 309 l~~~~p~~l~~l~~L~~L~L~~N~l~~~-~p~~~~~~~~~~L~~L~L~~N~l~~----~~p~~~~~~~~L~~L~l~~N-~ 382 (409)
....+......+..++.+.+..+.+.+. .-...+.++. +..+.+.+=.+.. ..| ....+|.+..+.+.++ .
T Consensus 782 ~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~--i~~~~l~~~~l~~~~ve~~p-~l~~~P~~~~~~i~~~~~ 858 (889)
T KOG4658|consen 782 LLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQ--LYWLPLSFLKLEELIVEECP-KLGKLPLLSTLTIVGCEE 858 (889)
T ss_pred ccccCCCHHHHhhhcccEEecccccccceeeecCCCCce--eEecccCccchhheehhcCc-ccccCccccccceecccc
Confidence 7766655666666666666666666554 2222333322 3333333322221 111 1344555666666664 3
Q ss_pred c--CCCch
Q 038636 383 L--SCPET 388 (409)
Q Consensus 383 l--~~p~~ 388 (409)
. .+|+.
T Consensus 859 ~~~~~~~~ 866 (889)
T KOG4658|consen 859 KLKEYPDG 866 (889)
T ss_pred ceeecCCc
Confidence 2 55554
No 32
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=3.4e-12 Score=118.06 Aligned_cols=202 Identities=27% Similarity=0.233 Sum_probs=104.0
Q ss_pred cCCCCCcEEeccCccCCccCc--hhccCCCCCCEEeccCCcCCCCC--chhhcCCCCCCeEEeecCcCCCCCCC--CCCC
Q 038636 131 TDLRKLTTLYLPGNFFTGNIP--VGITRLKKLQTLDLSHNSLSGII--PAQLSGLRSLTALRLSHNAFSGKIPS--LTGA 204 (409)
Q Consensus 131 ~~l~~L~~L~L~~n~~~~~~p--~~l~~l~~L~~L~l~~n~l~~~~--p~~l~~l~~L~~L~L~~n~l~~~~~~--~~~l 204 (409)
.++++|+.+.|.++.+. ..+ .....+++++.|||+.|-+.... -.....+++|+.|+++.|++.....+ -..+
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 34566666666666554 222 23445666666666666554321 12334566666666666665533332 2344
Q ss_pred CCcCEEeCCCCCCCCCC----CCCCCCCcEEEeecccCCCCCc-ccCCCCCCCEEEeeCCcCCCCC-chhhcCCCCCcEE
Q 038636 205 WQLHTLDLDSNQLYGNL----PKFPTSLRTLSLSHNLLSGHLS-SLRNLVNLKSLDLSSNRFTGAI-SHEVLTLPQVVSI 278 (409)
Q Consensus 205 ~~L~~L~l~~n~l~~~~----~~~~~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L 278 (409)
+.|+.|.++.|+++-.- -..+|+|+.|++..|.....-. ....+..|+.|||++|++-... -...+.++.|+.|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 55666666666665211 1223566666666663211111 3344555666666666654221 1234556666666
Q ss_pred EccCCcCCccCCCCC------CCCCCCCEEEccCCcCCCcch--hhhcCCCCCCEEEccCCeec
Q 038636 279 DVSVNRLTAIEMTTL------SGDTHLQELDVQGNLLRGHLP--INLVSLRNLTSINLARNQLS 334 (409)
Q Consensus 279 ~L~~n~l~~~~~~~~------~~~~~L~~L~Ls~n~l~~~~p--~~l~~l~~L~~L~L~~N~l~ 334 (409)
+++.+.+..+..+.. ...++|+.|++..|++. ..+ ..+..+++|+.|.+..|.++
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhhccccccc
Confidence 666666655443332 34556666666666664 111 12333455555555555554
No 33
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.17 E-value=7.9e-13 Score=125.92 Aligned_cols=196 Identities=26% Similarity=0.310 Sum_probs=127.0
Q ss_pred CCCCcEEeccCccCCccCchhccCCCCCCEEeccCCcCCCCCchhhcCCCCCCeEEeecCcCCCCCCCCCCCCCcCEEeC
Q 038636 133 LRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTALRLSHNAFSGKIPSLTGAWQLHTLDL 212 (409)
Q Consensus 133 l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l 212 (409)
+.--...|++.|++. .+|..+..+..|+.+.+..|.+. .+|..+.++..|++++|+.|+++-..+.+..+ -|+.|.+
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~l-pLkvli~ 150 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSHLPDGLCDL-PLKVLIV 150 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhcCChhhhcC-cceeEEE
Confidence 444556788888888 88888888888888888888876 67888888888888888888887433334433 2455555
Q ss_pred CCCCCCCCCCCCCCCCcEEEeecccCCCCCcccCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCCCC
Q 038636 213 DSNQLYGNLPKFPTSLRTLSLSHNLLSGHLSSLRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTT 292 (409)
Q Consensus 213 ~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 292 (409)
++| +++..++.++....|..||.+.|.+. .+|..++++.+|+.|++..|.+.. .++.
T Consensus 151 sNN---------------------kl~~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~-lp~E 207 (722)
T KOG0532|consen 151 SNN---------------------KLTSLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED-LPEE 207 (722)
T ss_pred ecC---------------------ccccCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh-CCHH
Confidence 544 44444445556666666777777666 455566666777777777776665 3333
Q ss_pred CCCCCCCCEEEccCCcCCCcchhhhcCCCCCCEEEccCCeecccCchhHhhhcc-CCccEEEccCC
Q 038636 293 LSGDTHLQELDVQGNLLRGHLPINLVSLRNLTSINLARNQLSGHIPKVYGAKLG-SSWRSLFLDHN 357 (409)
Q Consensus 293 ~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~-~~L~~L~L~~N 357 (409)
+. .-.|..||++.|++. .+|..|.+|+.|++|.|.+|.+. ..|..++.... .=.++|+..-+
T Consensus 208 l~-~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 208 LC-SLPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred Hh-CCceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence 33 335667777777776 67777777777777777777776 45555543321 11345555544
No 34
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.11 E-value=1.6e-10 Score=97.59 Aligned_cols=127 Identities=23% Similarity=0.251 Sum_probs=44.2
Q ss_pred ccCCCCCCCEEEeeCCcCCCCCchhhc-CCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchhhh-cCCC
Q 038636 244 SLRNLVNLKSLDLSSNRFTGAISHEVL-TLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINL-VSLR 321 (409)
Q Consensus 244 ~l~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l-~~l~ 321 (409)
.+.+..++++|+|.+|.++.. +.++ .+.+|+.|++++|.++.+ ..+..++.|++|++++|.++. +...+ ..++
T Consensus 14 ~~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp 88 (175)
T PF14580_consen 14 QYNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLP 88 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-T
T ss_pred ccccccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCC
Confidence 444556678888888887732 2344 467788888888888753 356677888888888888883 43334 3578
Q ss_pred CCCEEEccCCeecccCc-hhHhhhccCCccEEEccCCcCcccCch----hhhcCCCCCeEEc
Q 038636 322 NLTSINLARNQLSGHIP-KVYGAKLGSSWRSLFLDHNFLWGNLPP----EFSSSITRIRGSL 378 (409)
Q Consensus 322 ~L~~L~L~~N~l~~~~p-~~~~~~~~~~L~~L~L~~N~l~~~~p~----~~~~~~~L~~L~l 378 (409)
+|+.|++++|+|...-- ..+..++. |+.|++.+|.++.. +. .+..+|+|+.||-
T Consensus 89 ~L~~L~L~~N~I~~l~~l~~L~~l~~--L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 89 NLQELYLSNNKISDLNELEPLSSLPK--LRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp T--EEE-TTS---SCCCCGGGGG-TT----EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETT
T ss_pred cCCEEECcCCcCCChHHhHHHHcCCC--cceeeccCCcccch-hhHHHHHHHHcChhheeCC
Confidence 88888888888864211 33444544 88888888888743 32 3667778887764
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=1.1e-11 Score=114.90 Aligned_cols=202 Identities=21% Similarity=0.213 Sum_probs=134.2
Q ss_pred cCCCCCCEEeccCCcCCCCCc--hhhcCCCCCCeEEeecCcCCCCCCC---CCCCCCcCEEeCCCCCCCCCCC----CCC
Q 038636 155 TRLKKLQTLDLSHNSLSGIIP--AQLSGLRSLTALRLSHNAFSGKIPS---LTGAWQLHTLDLDSNQLYGNLP----KFP 225 (409)
Q Consensus 155 ~~l~~L~~L~l~~n~l~~~~p--~~l~~l~~L~~L~L~~n~l~~~~~~---~~~l~~L~~L~l~~n~l~~~~~----~~~ 225 (409)
+++.+|+.+.|.+.... ..+ .....+++++.|||+.|-+..-.+- ...+++|+.|+++.|.+.-... ...
T Consensus 118 sn~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 57889999999988775 223 3567899999999999987754443 6678999999999998875444 233
Q ss_pred CCCcEEEeecccCCCCCc--ccCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCC-CCCCCCCCCCEE
Q 038636 226 TSLRTLSLSHNLLSGHLS--SLRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEM-TTLSGDTHLQEL 302 (409)
Q Consensus 226 ~~L~~L~l~~n~l~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L 302 (409)
+.|+.|.++.|.++...- .+..+++|+.|++..|...+........+..|+.|+|++|++..... ...+.++.|+.|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 678888888888774221 45667888888888885332323334456778888888887766332 344667788888
Q ss_pred EccCCcCCCc-chhh-----hcCCCCCCEEEccCCeecccCc--hhHhhhccCCccEEEccCCcCc
Q 038636 303 DVQGNLLRGH-LPIN-----LVSLRNLTSINLARNQLSGHIP--KVYGAKLGSSWRSLFLDHNFLW 360 (409)
Q Consensus 303 ~Ls~n~l~~~-~p~~-----l~~l~~L~~L~L~~N~l~~~~p--~~~~~~~~~~L~~L~L~~N~l~ 360 (409)
+++.+.+... +|+. ...+++|++|++..|++.. .+ ..+..+ ++|+.|....|.++
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~-w~sl~~l~~l--~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRD-WRSLNHLRTL--ENLKHLRITLNYLN 339 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCcccc-ccccchhhcc--chhhhhhccccccc
Confidence 8888777632 2222 2446778888888887752 22 112222 23666666666665
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.05 E-value=2.5e-11 Score=107.39 Aligned_cols=129 Identities=26% Similarity=0.319 Sum_probs=85.8
Q ss_pred CCcCEEeCCCCCCCCCCC--CCCCCCcEEEeecccCCCCCcccCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccC
Q 038636 205 WQLHTLDLDSNQLYGNLP--KFPTSLRTLSLSHNLLSGHLSSLRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSV 282 (409)
Q Consensus 205 ~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 282 (409)
..|+++|+++|.++.... .+.|.++.|++++|.+...- .+..+++|+.||+++|.++ .+..+=..+.+++.|.|++
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceeeeh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhh
Confidence 345555555555543332 33456666666666665332 4677788888888888776 3333334677888888888
Q ss_pred CcCCccCCCCCCCCCCCCEEEccCCcCCCc-chhhhcCCCCCCEEEccCCeecccC
Q 038636 283 NRLTAIEMTTLSGDTHLQELDVQGNLLRGH-LPINLVSLRNLTSINLARNQLSGHI 337 (409)
Q Consensus 283 n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L~~N~l~~~~ 337 (409)
|.+.. ...+..+.+|..||+++|+|... --..++++|.|+.+.|.+|.+.+.+
T Consensus 362 N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 362 NKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred hhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 88764 34556777888888888888732 1245788888999999999888543
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.02 E-value=3.2e-10 Score=118.53 Aligned_cols=287 Identities=22% Similarity=0.200 Sum_probs=173.2
Q ss_pred CcEEEEEccCCCCCCCCccccCCCCCCcEEEccCCc--CCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEE
Q 038636 86 SRITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNN--FRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTL 163 (409)
Q Consensus 86 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~--l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L 163 (409)
..++.+.+.++.+... +.. ...+.|++|-+..|. +....+..|..++.|++|||++|.--+.+|..++++-+|++|
T Consensus 523 ~~~rr~s~~~~~~~~~-~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHI-AGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred hheeEEEEeccchhhc-cCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 4556666666654332 222 244579999988886 443444558889999999999988777999999999999999
Q ss_pred eccCCcCCCCCchhhcCCCCCCeEEeecCcCCCCCCC-CCCCCCcCEEeCCCCCCCCCCC-----CCCCCCcEEEeeccc
Q 038636 164 DLSHNSLSGIIPAQLSGLRSLTALRLSHNAFSGKIPS-LTGAWQLHTLDLDSNQLYGNLP-----KFPTSLRTLSLSHNL 237 (409)
Q Consensus 164 ~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~-----~~~~~L~~L~l~~n~ 237 (409)
++++..+. .+|..+.++..|.+|++..+.....+|. ...+.+|++|.+..-......- .....|+.+......
T Consensus 601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s 679 (889)
T KOG4658|consen 601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISS 679 (889)
T ss_pred cccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecch
Confidence 99999998 7899999999999999998876666666 4558999999987654221111 112344444443322
Q ss_pred CCCCCcccCCCCCCC----EEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCC------CCCCCEEEccCC
Q 038636 238 LSGHLSSLRNLVNLK----SLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSG------DTHLQELDVQGN 307 (409)
Q Consensus 238 l~~~~~~l~~l~~L~----~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------~~~L~~L~Ls~n 307 (409)
. .....+..+..|. .+.+.++... ..+..+..+.+|+.|.+.++.+..+....... ++++..+...++
T Consensus 680 ~-~~~e~l~~~~~L~~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~ 757 (889)
T KOG4658|consen 680 V-LLLEDLLGMTRLRSLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNC 757 (889)
T ss_pred h-HhHhhhhhhHHHHHHhHhhhhcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcc
Confidence 2 0011122222222 2222222222 33456677888888888888876533322111 122333333233
Q ss_pred cCCCcchhhhcCCCCCCEEEccCCeecccCchhHhhhccCCccEEEccCCcCccc-CchhhhcCCCCCeEEcCC
Q 038636 308 LLRGHLPINLVSLRNLTSINLARNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWGN-LPPEFSSSITRIRGSLAK 380 (409)
Q Consensus 308 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~-~p~~~~~~~~L~~L~l~~ 380 (409)
... ..+.+.--.++|+.|.+..+.....+......... +..+-+..+.+.+. .-...+.++++..+.+..
T Consensus 758 ~~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~--l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~ 828 (889)
T KOG4658|consen 758 HML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLE--LKELILPFNKLEGLRMLCSLGGLPQLYWLPLSF 828 (889)
T ss_pred ccc-cccchhhccCcccEEEEecccccccCCCHHHHhhh--cccEEecccccccceeeecCCCCceeEecccCc
Confidence 222 22333444589999999988766565555555544 66566666666654 233344444444444443
No 38
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.02 E-value=2.4e-10 Score=96.46 Aligned_cols=106 Identities=35% Similarity=0.491 Sum_probs=25.3
Q ss_pred CCCCCcEEEccCCcCCCCCccccc-CCCCCcEEeccCccCCccCchhccCCCCCCEEeccCCcCCCCCchhh-cCCCCCC
Q 038636 108 NLTELTTLDLSRNNFRGPIPDTIT-DLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHNSLSGIIPAQL-SGLRSLT 185 (409)
Q Consensus 108 ~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l-~~l~~L~ 185 (409)
+...++.|+|.+|.++. + +.++ .+.+|+.|++++|.++ .++ .+..+++|++|++++|.++. +...+ ..+++|+
T Consensus 17 n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT--
T ss_pred ccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCCc-cccchHHhCCcCC
Confidence 34445555666655542 2 2233 3555566666666555 332 35555566666666666553 22223 2455566
Q ss_pred eEEeecCcCCCC--CCCCCCCCCcCEEeCCCCCCC
Q 038636 186 ALRLSHNAFSGK--IPSLTGAWQLHTLDLDSNQLY 218 (409)
Q Consensus 186 ~L~L~~n~l~~~--~~~~~~l~~L~~L~l~~n~l~ 218 (409)
+|++++|++... +..+..+++|++|++.+|.+.
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 666666655421 111444555555555555444
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.99 E-value=2.8e-11 Score=118.04 Aligned_cols=193 Identities=30% Similarity=0.304 Sum_probs=90.7
Q ss_pred CCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEeccCCcCCCCCchhhcCCCCCCeEE
Q 038636 109 LTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTALR 188 (409)
Q Consensus 109 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 188 (409)
+..++.+.+..|.+.. +-..+..+++|+.|++.+|.+. .+...+..+++|++|++++|.++.. ..+..++.|+.|+
T Consensus 71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELN 146 (414)
T ss_pred hHhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccc--cchhhccchhhhe
Confidence 4444445555555542 2233555556666666666655 2222245556666666666666533 2344555566666
Q ss_pred eecCcCCCCCCCCCCCCCcCEEeCCCCCCCCCCC---CCCCCCcEEEeecccCCCCCcccCCCCCCCEEEeeCCcCCCCC
Q 038636 189 LSHNAFSGKIPSLTGAWQLHTLDLDSNQLYGNLP---KFPTSLRTLSLSHNLLSGHLSSLRNLVNLKSLDLSSNRFTGAI 265 (409)
Q Consensus 189 L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~ 265 (409)
+++|.++ .+..+..++.|+.+++++|.+...-+ ....+++.+++.+|.+.... .+..+..+..+++..|.++...
T Consensus 147 l~~N~i~-~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~i~~~~ 224 (414)
T KOG0531|consen 147 LSGNLIS-DISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNKISKLE 224 (414)
T ss_pred eccCcch-hccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhccc-chHHHHHHHHhhcccccceecc
Confidence 6666555 34445555566666666665554333 23345555555555443221 1222223333344444444221
Q ss_pred chhhcCCCC--CcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCC
Q 038636 266 SHEVLTLPQ--VVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLR 310 (409)
Q Consensus 266 ~~~~~~l~~--L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~ 310 (409)
+ +..+.. |+.+++++|.+... ...+..+..+..|++.+|++.
T Consensus 225 ~--l~~~~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n~~~ 268 (414)
T KOG0531|consen 225 G--LNELVMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSSNRIS 268 (414)
T ss_pred C--cccchhHHHHHHhcccCccccc-cccccccccccccchhhcccc
Confidence 1 111121 45555555555431 123334445555555555444
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.97 E-value=3.8e-11 Score=117.17 Aligned_cols=241 Identities=28% Similarity=0.317 Sum_probs=170.7
Q ss_pred cCCCCCcEEeccCccCCccCchhccCCCCCCEEeccCCcCCCCCchhhcCCCCCCeEEeecCcCCCCCCCCCCCCCcCEE
Q 038636 131 TDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTALRLSHNAFSGKIPSLTGAWQLHTL 210 (409)
Q Consensus 131 ~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L 210 (409)
..+..++.+++..|.+. .+-..+..+.+|+.|++.+|.+... ...+..+++|++|++++|.++ .+..+..++.|+.|
T Consensus 69 ~~l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~-~i~~l~~l~~L~~L 145 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKIT-KLEGLSTLTLLKEL 145 (414)
T ss_pred HHhHhHHhhccchhhhh-hhhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccc-cccchhhccchhhh
Confidence 45677888889998887 4444578889999999999999854 333778999999999999988 56667777789999
Q ss_pred eCCCCCCCCCCC-CCCCCCcEEEeecccCCCCCcc-cCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCcc
Q 038636 211 DLDSNQLYGNLP-KFPTSLRTLSLSHNLLSGHLSS-LRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAI 288 (409)
Q Consensus 211 ~l~~n~l~~~~~-~~~~~L~~L~l~~n~l~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 288 (409)
++++|.++..-- ...+.|+.+++++|.+....+. ...+.+++.+++.+|.+... ..+..+..+..+++..|.++..
T Consensus 146 ~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~ 223 (414)
T KOG0531|consen 146 NLSGNLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKL 223 (414)
T ss_pred eeccCcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccceec
Confidence 999999875433 3357888899999988765443 57788888899998887633 2333445555567888887753
Q ss_pred CCCCCCCCCC--CCEEEccCCcCCCcchhhhcCCCCCCEEEccCCeecccCchhHhhhccCCccEEEccCCcCccc---C
Q 038636 289 EMTTLSGDTH--LQELDVQGNLLRGHLPINLVSLRNLTSINLARNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWGN---L 363 (409)
Q Consensus 289 ~~~~~~~~~~--L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~---~ 363 (409)
.. +..+.. |+.+++++|.+. .++..+..+.++..|++..|++...-.. .... .+..+....|.+... .
T Consensus 224 ~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~ 296 (414)
T KOG0531|consen 224 EG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLEGL--ERLP--KLSELWLNDNKLALSEAIS 296 (414)
T ss_pred cC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhccccccccc--cccc--hHHHhccCcchhcchhhhh
Confidence 22 222333 899999999998 4445677788999999999988743221 1222 255666666765522 1
Q ss_pred chh-hhcCCCCCeEEcCCCcc
Q 038636 364 PPE-FSSSITRIRGSLAKNCL 383 (409)
Q Consensus 364 p~~-~~~~~~L~~L~l~~N~l 383 (409)
... ....+.+..+.+.+|+.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~ 317 (414)
T KOG0531|consen 297 QEYITSAAPTLVTLTLELNPI 317 (414)
T ss_pred ccccccccccccccccccCcc
Confidence 111 44556677788888876
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.88 E-value=1.9e-09 Score=74.89 Aligned_cols=59 Identities=32% Similarity=0.430 Sum_probs=30.3
Q ss_pred CCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchhhhcCCCCCCEEEccCCe
Q 038636 274 QVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLTSINLARNQ 332 (409)
Q Consensus 274 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~ 332 (409)
+|++|++++|+++.++...|..+++|++|++++|.++...|..|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 44555555555555444455555555555555555554444445555555555555554
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.78 E-value=4.8e-09 Score=72.82 Aligned_cols=61 Identities=38% Similarity=0.484 Sum_probs=41.7
Q ss_pred CCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcC
Q 038636 249 VNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLL 309 (409)
Q Consensus 249 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l 309 (409)
++|++|++++|+++...+..|..+++|++|++++|+++.+.+..|..+++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 3566777777777655556666777777777777777766666677777777777777654
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.64 E-value=5.4e-10 Score=109.62 Aligned_cols=125 Identities=27% Similarity=0.281 Sum_probs=67.3
Q ss_pred CCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchhh-hcCCCCCCEEEc
Q 038636 250 NLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPIN-LVSLRNLTSINL 328 (409)
Q Consensus 250 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~L 328 (409)
+|...++++|.+. ....++.-++.|++|+|++|+++.. ..+..++.|++|||++|.+. .+|.. ...+ +|+.|++
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNL 239 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhh-hheeeee
Confidence 4555556666555 3344555556666666666666642 24555666666666666666 33321 1222 3666666
Q ss_pred cCCeecccCchhHhhhccCCccEEEccCCcCcccC-chhhhcCCCCCeEEcCCCcc
Q 038636 329 ARNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWGNL-PPEFSSSITRIRGSLAKNCL 383 (409)
Q Consensus 329 ~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~-p~~~~~~~~L~~L~l~~N~l 383 (409)
++|.++.. ..+.++.+ |+.||+++|-|.+.- -.-++.+..|..|.|.||++
T Consensus 240 rnN~l~tL--~gie~Lks--L~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 240 RNNALTTL--RGIENLKS--LYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cccHHHhh--hhHHhhhh--hhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 66665522 12444544 666666666655421 11244555566666666666
No 44
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.62 E-value=3.3e-09 Score=83.53 Aligned_cols=138 Identities=20% Similarity=0.167 Sum_probs=103.7
Q ss_pred CCCEEEeeCCcCCCCCchhh---cCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchhhhcCCCCCCEE
Q 038636 250 NLKSLDLSSNRFTGAISHEV---LTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLTSI 326 (409)
Q Consensus 250 ~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L 326 (409)
.+..++|+.|++- .+++.. .....|+.++|++|.+...+...-..++.++.|++++|.+. .+|..+..++.|+.|
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 3456777777664 344433 34556777899999998754444455678999999999999 889889999999999
Q ss_pred EccCCeecccCchhHhhhccCCccEEEccCCcCcccCchhhhcCCCCCeEEcCCCcc--CCCchhhhcc
Q 038636 327 NLARNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWGNLPPEFSSSITRIRGSLAKNCL--SCPETIRLCH 393 (409)
Q Consensus 327 ~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~l~~N~l--~~p~~l~~~~ 393 (409)
+++.|.+. ..|..+..+.. +-.||..+|.+. ++|..+...+..-..+++++++ .+|..+..++
T Consensus 106 Nl~~N~l~-~~p~vi~~L~~--l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~klqa~k 170 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPLIK--LDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKLQALK 170 (177)
T ss_pred ccccCccc-cchHHHHHHHh--HHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCcccccccC
Confidence 99999998 77888887766 889999999887 6777665555556667778888 7776665544
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1.1e-09 Score=96.99 Aligned_cols=172 Identities=24% Similarity=0.251 Sum_probs=102.7
Q ss_pred CCcEEeccCccCCc-cCchhccCCCCCCEEeccCCcCCCCCchhhcCCCCCCeEEeecCc-CCCCCCC--CCCCCCcCEE
Q 038636 135 KLTTLYLPGNFFTG-NIPVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTALRLSHNA-FSGKIPS--LTGAWQLHTL 210 (409)
Q Consensus 135 ~L~~L~L~~n~~~~-~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~~~--~~~l~~L~~L 210 (409)
.|++|||+...++. .+-.-++.+.+|+.|.+.++++...+...+..-.+|+.|+++.+. ++..--. +.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 47788887776653 122234667788888888888877777777777888888887764 2211111 6677788888
Q ss_pred eCCCCCCCCCCC-----CCCCCCcEEEeecccCC---CCCc-ccCCCCCCCEEEeeCCc-CCCCCchhhcCCCCCcEEEc
Q 038636 211 DLDSNQLYGNLP-----KFPTSLRTLSLSHNLLS---GHLS-SLRNLVNLKSLDLSSNR-FTGAISHEVLTLPQVVSIDV 280 (409)
Q Consensus 211 ~l~~n~l~~~~~-----~~~~~L~~L~l~~n~l~---~~~~-~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L 280 (409)
+++.|.+....- .+.++|+.|+++++.-. ..+. -...+++|..|||++|. ++......|.+++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 888877654332 34467777777765311 1122 23456677777777664 33333444556666666666
Q ss_pred cCCcCCccCCC---CCCCCCCCCEEEccCCc
Q 038636 281 SVNRLTAIEMT---TLSGDTHLQELDVQGNL 308 (409)
Q Consensus 281 ~~n~l~~~~~~---~~~~~~~L~~L~Ls~n~ 308 (409)
+.|..- ++. .+...++|.+||+-++-
T Consensus 346 sRCY~i--~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 346 SRCYDI--IPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hhhcCC--ChHHeeeeccCcceEEEEecccc
Confidence 665432 222 23445556666555443
No 46
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.54 E-value=4.3e-09 Score=92.16 Aligned_cols=137 Identities=18% Similarity=0.060 Sum_probs=71.7
Q ss_pred CCCCCCEEEeeCCcCCCCCc----hhhcCCCCCcEEEccCCcCCccCCC-----CCCCCCCCCEEEccCCcCCCc----c
Q 038636 247 NLVNLKSLDLSSNRFTGAIS----HEVLTLPQVVSIDVSVNRLTAIEMT-----TLSGDTHLQELDVQGNLLRGH----L 313 (409)
Q Consensus 247 ~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~-----~~~~~~~L~~L~Ls~n~l~~~----~ 313 (409)
+-+.|+.+....|++..... ..+..-..|+.+.+.+|.|...... .+..+.+|+.||+.+|.++-. +
T Consensus 155 ~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~L 234 (388)
T COG5238 155 DKPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYL 234 (388)
T ss_pred cCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHH
Confidence 33455555555555442111 1122224566666666665432222 123456677777777766632 2
Q ss_pred hhhhcCCCCCCEEEccCCeecccCchhHh----hhccCCccEEEccCCcCcccCch------h-hhcCCCCCeEEcCCCc
Q 038636 314 PINLVSLRNLTSINLARNQLSGHIPKVYG----AKLGSSWRSLFLDHNFLWGNLPP------E-FSSSITRIRGSLAKNC 382 (409)
Q Consensus 314 p~~l~~l~~L~~L~L~~N~l~~~~p~~~~----~~~~~~L~~L~L~~N~l~~~~p~------~-~~~~~~L~~L~l~~N~ 382 (409)
...+...+.|+.|.+..|-++.....++. ....|+|..|-..+|...+.+-. . =.+++-|..+.+.||+
T Consensus 235 a~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr 314 (388)
T COG5238 235 ADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNR 314 (388)
T ss_pred HHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCc
Confidence 22334445677777777766654443332 22335677777777766543211 1 1234556777778887
Q ss_pred c
Q 038636 383 L 383 (409)
Q Consensus 383 l 383 (409)
+
T Consensus 315 ~ 315 (388)
T COG5238 315 I 315 (388)
T ss_pred c
Confidence 7
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.52 E-value=1.7e-08 Score=89.52 Aligned_cols=82 Identities=17% Similarity=0.250 Sum_probs=49.1
Q ss_pred CCCCCEEEeeCCcCCCC-CchhhcCCCCCcEEEccCCcCCcc-CCCCCCCCCCCCEEEccCCcCCCcchh------hhcC
Q 038636 248 LVNLKSLDLSSNRFTGA-ISHEVLTLPQVVSIDVSVNRLTAI-EMTTLSGDTHLQELDVQGNLLRGHLPI------NLVS 319 (409)
Q Consensus 248 l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~L~~L~Ls~n~l~~~~p~------~l~~ 319 (409)
++++..+-+..|.+... ..+.+..+|.+..|+|+.|++..- ....+..++.|..|.++++.+.+.+-. -++.
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaR 277 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIAR 277 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEee
Confidence 45566666666655422 123344566677777777777541 122456677788888888777644322 2566
Q ss_pred CCCCCEEEcc
Q 038636 320 LRNLTSINLA 329 (409)
Q Consensus 320 l~~L~~L~L~ 329 (409)
+++++.|+=+
T Consensus 278 L~~v~vLNGs 287 (418)
T KOG2982|consen 278 LTKVQVLNGS 287 (418)
T ss_pred ccceEEecCc
Confidence 7777777543
No 48
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.45 E-value=3.7e-09 Score=103.94 Aligned_cols=127 Identities=31% Similarity=0.340 Sum_probs=78.6
Q ss_pred CCcEEEeecccCCCCCcccCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccC
Q 038636 227 SLRTLSLSHNLLSGHLSSLRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQG 306 (409)
Q Consensus 227 ~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~ 306 (409)
.|...+.++|++.....++.-++.++.|+|+.|+++.. +.+..++.|++|||++|.+...+--....+. |+.|.+++
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrn 241 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRN 241 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeecc
Confidence 45566666666665444666667777777777777643 2566777777777777777753333333443 77777777
Q ss_pred CcCCCcchhhhcCCCCCCEEEccCCeecccCch-hHhhhccCCccEEEccCCcCc
Q 038636 307 NLLRGHLPINLVSLRNLTSINLARNQLSGHIPK-VYGAKLGSSWRSLFLDHNFLW 360 (409)
Q Consensus 307 n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~-~~~~~~~~~L~~L~L~~N~l~ 360 (409)
|.++.. ..+.++.+|+.||+++|-+.+.--- -+..+.. |+.|.|.+|.+.
T Consensus 242 N~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~--L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 242 NALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSS--LIVLWLEGNPLC 292 (1096)
T ss_pred cHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHH--HHHHhhcCCccc
Confidence 777622 2456677777777777766542211 1223333 777777777775
No 49
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.32 E-value=1.2e-07 Score=83.22 Aligned_cols=180 Identities=19% Similarity=0.224 Sum_probs=105.5
Q ss_pred cCCCCCCEEeccCCcCCCCCchh----hcCCCCCCeEEeecCcCCCCCCC---------------CCCCCCcCEEeCCCC
Q 038636 155 TRLKKLQTLDLSHNSLSGIIPAQ----LSGLRSLTALRLSHNAFSGKIPS---------------LTGAWQLHTLDLDSN 215 (409)
Q Consensus 155 ~~l~~L~~L~l~~n~l~~~~p~~----l~~l~~L~~L~L~~n~l~~~~~~---------------~~~l~~L~~L~l~~n 215 (409)
-+|++|+..+|+.|.+....|.. ++.-+.|++|.+++|.+- .+.. ...-+.|+.+....|
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 34455555555555544333332 334455555555555432 1111 223456777777777
Q ss_pred CCCCCCC-------CCCCCCcEEEeecccCCCC--Cc----ccCCCCCCCEEEeeCCcCCCC----CchhhcCCCCCcEE
Q 038636 216 QLYGNLP-------KFPTSLRTLSLSHNLLSGH--LS----SLRNLVNLKSLDLSSNRFTGA----ISHEVLTLPQVVSI 278 (409)
Q Consensus 216 ~l~~~~~-------~~~~~L~~L~l~~n~l~~~--~~----~l~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L 278 (409)
++..... ..-..|+.+.+..|.+... .. .+..+.+|+.||+.+|.++-. ....+...+.|+.|
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence 6653322 1114677777777776532 11 345677888888888887732 23445567778888
Q ss_pred EccCCcCCccCCCCC------CCCCCCCEEEccCCcCCCcchhh-------hcCCCCCCEEEccCCeecc
Q 038636 279 DVSVNRLTAIEMTTL------SGDTHLQELDVQGNLLRGHLPIN-------LVSLRNLTSINLARNQLSG 335 (409)
Q Consensus 279 ~L~~n~l~~~~~~~~------~~~~~L~~L~Ls~n~l~~~~p~~-------l~~l~~L~~L~L~~N~l~~ 335 (409)
.+.+|-++.....++ ...++|..|...+|...+.+-.. -..+|-|..|.+.+|++..
T Consensus 248 ~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 248 RLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred cccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 888887765433321 34578888888888776543221 1456778888888898873
No 50
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.21 E-value=1.4e-07 Score=74.41 Aligned_cols=110 Identities=24% Similarity=0.267 Sum_probs=88.9
Q ss_pred CCcEEEccCCcCCccC--CCCCCCCCCCCEEEccCCcCCCcchhhh-cCCCCCCEEEccCCeecccCchhHhhhccCCcc
Q 038636 274 QVVSIDVSVNRLTAIE--MTTLSGDTHLQELDVQGNLLRGHLPINL-VSLRNLTSINLARNQLSGHIPKVYGAKLGSSWR 350 (409)
Q Consensus 274 ~L~~L~L~~n~l~~~~--~~~~~~~~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~ 350 (409)
.+..++|+.|++..+. ...+.....|+..+|++|.+. .+|..| ..++.++.|++++|+++ .+|..+..++. |+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~a--Lr 103 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPA--LR 103 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHH--hh
Confidence 4567788888775421 123456678999999999999 555555 55679999999999999 88988999977 99
Q ss_pred EEEccCCcCcccCchhhhcCCCCCeEEcCCCcc-CCCch
Q 038636 351 SLFLDHNFLWGNLPPEFSSSITRIRGSLAKNCL-SCPET 388 (409)
Q Consensus 351 ~L~L~~N~l~~~~p~~~~~~~~L~~L~l~~N~l-~~p~~ 388 (409)
.|++++|.+. ..|..+..+.++-.|+.-+|.. ++|-.
T Consensus 104 ~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 104 SLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred hcccccCccc-cchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 9999999998 7788888899999999999988 77655
No 51
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.19 E-value=3e-08 Score=88.10 Aligned_cols=215 Identities=20% Similarity=0.200 Sum_probs=141.5
Q ss_pred CCEEeccCCcCCCCCchhhcCCC--CCCeEEeecCcCCCC-CCC-CC-CCCCcCEEeCCCCCCCCCCC----CCCCCCcE
Q 038636 160 LQTLDLSHNSLSGIIPAQLSGLR--SLTALRLSHNAFSGK-IPS-LT-GAWQLHTLDLDSNQLYGNLP----KFPTSLRT 230 (409)
Q Consensus 160 L~~L~l~~n~l~~~~p~~l~~l~--~L~~L~L~~n~l~~~-~~~-~~-~l~~L~~L~l~~n~l~~~~~----~~~~~L~~ 230 (409)
-+.+|+.+-.+. |..++.+. ....+.+........ +.. +. .-+.|+++||+...++...- +...+|+.
T Consensus 138 W~~lDl~~r~i~---p~~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~ 214 (419)
T KOG2120|consen 138 WQTLDLTGRNIH---PDVLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKN 214 (419)
T ss_pred eeeeccCCCccC---hhHHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhh
Confidence 466777665554 34444433 344444443322211 111 11 12358999999877764322 23478999
Q ss_pred EEeecccCCCCCc-ccCCCCCCCEEEeeCCc-CCCC-CchhhcCCCCCcEEEccCCcCCccCCCCC--CCCCCCCEEEcc
Q 038636 231 LSLSHNLLSGHLS-SLRNLVNLKSLDLSSNR-FTGA-ISHEVLTLPQVVSIDVSVNRLTAIEMTTL--SGDTHLQELDVQ 305 (409)
Q Consensus 231 L~l~~n~l~~~~~-~l~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~~~~L~~L~Ls 305 (409)
|.+.++++...+. .+.+-.+|+.|+++.+. ++.. .--.+.+++.|..|++++|.+.......+ .--++|+.|+++
T Consensus 215 lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNls 294 (419)
T KOG2120|consen 215 LSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLS 294 (419)
T ss_pred ccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhh
Confidence 9999999988777 88888999999998864 4422 12235678899999999998776332211 224688999998
Q ss_pred CCcCC---CcchhhhcCCCCCCEEEccCC-eecccCchhHhhhccCCccEEEccCCcCcccCchh---hhcCCCCCeEEc
Q 038636 306 GNLLR---GHLPINLVSLRNLTSINLARN-QLSGHIPKVYGAKLGSSWRSLFLDHNFLWGNLPPE---FSSSITRIRGSL 378 (409)
Q Consensus 306 ~n~l~---~~~p~~l~~l~~L~~L~L~~N-~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~p~~---~~~~~~L~~L~l 378 (409)
++.-. ..+..-...+|+|..|||+.| .++...-..|.++.. |++|.++.|+. .+|.. +...+.|.+||+
T Consensus 295 G~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~--L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv 370 (419)
T KOG2120|consen 295 GYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNY--LQHLSLSRCYD--IIPETLLELNSKPSLVYLDV 370 (419)
T ss_pred hhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcch--heeeehhhhcC--CChHHeeeeccCcceEEEEe
Confidence 86422 233344567899999999998 566555556666766 99999999875 46654 455677999999
Q ss_pred CCC
Q 038636 379 AKN 381 (409)
Q Consensus 379 ~~N 381 (409)
.|.
T Consensus 371 ~g~ 373 (419)
T KOG2120|consen 371 FGC 373 (419)
T ss_pred ccc
Confidence 886
No 52
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.19 E-value=1.4e-05 Score=76.03 Aligned_cols=136 Identities=21% Similarity=0.224 Sum_probs=82.5
Q ss_pred cCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEeccCCcCCCCCchhhcCCCCCC
Q 038636 106 IGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLT 185 (409)
Q Consensus 106 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~ 185 (409)
+..+.+++.|++++|.++ .+|. + .++|++|.+++|.--..+|..+. ++|++|++++|.-...+|. +|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------SVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------ccc
Confidence 555688999999999887 4562 2 23699999988544446776553 5889999988833224553 467
Q ss_pred eEEeecCcCCCCCCCCCCC-CCcCEEeCCCCCCC--CCCC-CCCCCCcEEEeecccCCCCCcccCCCCCCCEEEeeCC
Q 038636 186 ALRLSHNAFSGKIPSLTGA-WQLHTLDLDSNQLY--GNLP-KFPTSLRTLSLSHNLLSGHLSSLRNLVNLKSLDLSSN 259 (409)
Q Consensus 186 ~L~L~~n~l~~~~~~~~~l-~~L~~L~l~~n~l~--~~~~-~~~~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n 259 (409)
.|++..+... .+ ..+ ++|+.|.+.+++.. ..+| .++++|++|++++|.....++.+. .+|+.|+++.+
T Consensus 116 ~L~L~~n~~~-~L---~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 116 SLEIKGSATD-SI---KNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred eEEeCCCCCc-cc---ccCcchHhheeccccccccccccccccCCcccEEEecCCCcccCccccc--ccCcEEEeccc
Confidence 7777655432 11 122 24666666433211 1122 345778888887776543322333 46777777665
No 53
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.17 E-value=2.3e-06 Score=54.47 Aligned_cols=40 Identities=35% Similarity=0.702 Sum_probs=28.8
Q ss_pred hhhHHHHHHHHhhCCCCCCCCCCCCCCCCCC--CCCCCCCCCceeeeecC
Q 038636 31 ATDTQVLRLLKRSIDPNTIPRSSFLDSWDFK--LDPCESSGGQFLGILCS 78 (409)
Q Consensus 31 ~~~~~~l~~~~~~~~~~~~~~~~~l~~w~~~--~~~C~~~~~~w~gv~c~ 78 (409)
+.|++||++||+++. .++...+.+|+.. .++|. |.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~---~~~~~~l~~W~~~~~~~~C~-----W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLN---NDPSGVLSSWNPSSDSDPCS-----WSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT----SC-CCCTT--TT--S-CCC-----STTEEE-
T ss_pred cHHHHHHHHHHHhcc---cccCcccccCCCcCCCCCee-----eccEEeC
Confidence 468999999999994 2345678999986 79998 5999995
No 54
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.15 E-value=3e-07 Score=81.84 Aligned_cols=84 Identities=32% Similarity=0.364 Sum_probs=34.8
Q ss_pred CCCCcEEEccCCcCCC--CCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEeccCCcCCCC-CchhhcCCCCCC
Q 038636 109 LTELTTLDLSRNNFRG--PIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHNSLSGI-IPAQLSGLRSLT 185 (409)
Q Consensus 109 l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~-~p~~l~~l~~L~ 185 (409)
.++++.|||.+|.++. .+..-+.++|+|++|+++.|.+...|-..-..+.+|++|.|.+..+.-. .-..+..++.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 3445555555555442 1222234455555555555544422211102334455555544433211 112233444455
Q ss_pred eEEeecC
Q 038636 186 ALRLSHN 192 (409)
Q Consensus 186 ~L~L~~n 192 (409)
+|.++.|
T Consensus 150 elHmS~N 156 (418)
T KOG2982|consen 150 ELHMSDN 156 (418)
T ss_pred hhhhccc
Confidence 5555544
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.04 E-value=6.5e-06 Score=52.53 Aligned_cols=37 Identities=41% Similarity=0.663 Sum_probs=24.9
Q ss_pred CCCCEEEccCCcCCCcchhhhcCCCCCCEEEccCCeec
Q 038636 297 THLQELDVQGNLLRGHLPINLVSLRNLTSINLARNQLS 334 (409)
Q Consensus 297 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~ 334 (409)
++|++|++++|+++ .+|..++++++|+.|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 35777777777777 56666777777777777777776
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.03 E-value=2.6e-05 Score=74.17 Aligned_cols=132 Identities=19% Similarity=0.273 Sum_probs=84.7
Q ss_pred CcEEEEEccCCCCCCCCccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCc-cCCccCchhccCCCCCCEEe
Q 038636 86 SRITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGN-FFTGNIPVGITRLKKLQTLD 164 (409)
Q Consensus 86 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n-~~~~~~p~~l~~l~~L~~L~ 164 (409)
...+.|+++++.++.. | .+ -++|++|.++++.--..+|..+. ++|++|++++| .+. .+|. +|+.|+
T Consensus 52 ~~l~~L~Is~c~L~sL-P-~L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~-sLP~------sLe~L~ 118 (426)
T PRK15386 52 RASGRLYIKDCDIESL-P-VL--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEIS-GLPE------SVRSLE 118 (426)
T ss_pred cCCCEEEeCCCCCccc-C-CC--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccc-cccc------ccceEE
Confidence 4567899999877654 3 22 24699999988643346666553 58999999998 444 5664 467777
Q ss_pred ccCCcCC--CCCchhhcCCCCCCeEEeecCcCC--CCCCCCCCCCCcCEEeCCCCCCCCCCCCCCCCCcEEEeeccc
Q 038636 165 LSHNSLS--GIIPAQLSGLRSLTALRLSHNAFS--GKIPSLTGAWQLHTLDLDSNQLYGNLPKFPTSLRTLSLSHNL 237 (409)
Q Consensus 165 l~~n~l~--~~~p~~l~~l~~L~~L~L~~n~l~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~ 237 (409)
++.+... +.+|. +|+.|.+.+++.. ..+|. .-.++|++|++++|......+.++.+|+.|+++.+.
T Consensus 119 L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~-~LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~n~ 188 (426)
T PRK15386 119 IKGSATDSIKNVPN------GLTSLSINSYNPENQARIDN-LISPSLKTLSLTGCSNIILPEKLPESLQSITLHIEQ 188 (426)
T ss_pred eCCCCCcccccCcc------hHhheecccccccccccccc-ccCCcccEEEecCCCcccCcccccccCcEEEecccc
Confidence 7766543 23333 4667777543211 01111 112579999999988664333677899999998764
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.02 E-value=4.5e-06 Score=53.27 Aligned_cols=35 Identities=29% Similarity=0.318 Sum_probs=21.0
Q ss_pred CccEEEccCCcCcccCchhhhcCCCCCeEEcCCCcc
Q 038636 348 SWRSLFLDHNFLWGNLPPEFSSSITRIRGSLAKNCL 383 (409)
Q Consensus 348 ~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~l~~N~l 383 (409)
+|++|++++|+++ .+|..+.++++|+.|++++|++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i 36 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPI 36 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCC
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCC
Confidence 3666666666666 4555566666666666666665
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.02 E-value=1.1e-05 Score=68.20 Aligned_cols=100 Identities=26% Similarity=0.319 Sum_probs=65.8
Q ss_pred CCCCeEEeecCcCCCCCCCCCCCCCcCEEeCCCCCCCCCCC---CCCCCCcEEEeecccCCCCCc--ccCCCCCCCEEEe
Q 038636 182 RSLTALRLSHNAFSGKIPSLTGAWQLHTLDLDSNQLYGNLP---KFPTSLRTLSLSHNLLSGHLS--SLRNLVNLKSLDL 256 (409)
Q Consensus 182 ~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~~~--~l~~l~~L~~L~l 256 (409)
.+...+||++|.+. .++.+..++.|++|.+.+|.++..-| .+.++|..|.+.+|.+..... .+..+++|++|.+
T Consensus 42 d~~d~iDLtdNdl~-~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR-KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred cccceecccccchh-hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 35566777777665 45556677777777777777776655 344677777777777765433 5667778888888
Q ss_pred eCCcCCCC---CchhhcCCCCCcEEEccC
Q 038636 257 SSNRFTGA---ISHEVLTLPQVVSIDVSV 282 (409)
Q Consensus 257 ~~n~l~~~---~~~~~~~l~~L~~L~L~~ 282 (409)
-+|..+.. ---.+..+|+|+.||+..
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhh
Confidence 77776522 112345667777777654
No 59
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.69 E-value=1.8e-05 Score=81.27 Aligned_cols=106 Identities=13% Similarity=0.149 Sum_probs=56.3
Q ss_pred cCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCc-cCCCCCCCCCCCCEEEccCCcCCCcc--h----hhh
Q 038636 245 LRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTA-IEMTTLSGDTHLQELDVQGNLLRGHL--P----INL 317 (409)
Q Consensus 245 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~L~~L~Ls~n~l~~~~--p----~~l 317 (409)
..++++|..||+++.+++.. ..++.+++|+.|.+.+=.+.. .....+-.+++|+.||+|........ . +.-
T Consensus 169 c~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~ 246 (699)
T KOG3665|consen 169 CASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECG 246 (699)
T ss_pred hhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhc
Confidence 34556666666666666533 455566666666665544442 11223345566666666655443211 1 112
Q ss_pred cCCCCCCEEEccCCeecccCchhHhhhccCCccEEE
Q 038636 318 VSLRNLTSINLARNQLSGHIPKVYGAKLGSSWRSLF 353 (409)
Q Consensus 318 ~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~ 353 (409)
..+|+|+.||.|+..+.+.+-+.+-... ++|+.+-
T Consensus 247 ~~LpeLrfLDcSgTdi~~~~le~ll~sH-~~L~~i~ 281 (699)
T KOG3665|consen 247 MVLPELRFLDCSGTDINEEILEELLNSH-PNLQQIA 281 (699)
T ss_pred ccCccccEEecCCcchhHHHHHHHHHhC-ccHhhhh
Confidence 3367777777777777766555554422 3455444
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.67 E-value=9.3e-05 Score=62.67 Aligned_cols=103 Identities=22% Similarity=0.311 Sum_probs=61.3
Q ss_pred CCcEEEeecccCCCCCcccCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccC-CCCCCCCCCCCEEEcc
Q 038636 227 SLRTLSLSHNLLSGHLSSLRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIE-MTTLSGDTHLQELDVQ 305 (409)
Q Consensus 227 ~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~~~~L~~L~Ls 305 (409)
....+++++|.+.. .+.|..++.|.+|.+.+|+++...|.--.-+++|+.|.|.+|.+.... ...+..++.|++|.+-
T Consensus 43 ~~d~iDLtdNdl~~-l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK-LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred ccceecccccchhh-cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 44555666665542 235666667777777777777555544444666777777777665422 2344566677777777
Q ss_pred CCcCCCc---chhhhcCCCCCCEEEccC
Q 038636 306 GNLLRGH---LPINLVSLRNLTSINLAR 330 (409)
Q Consensus 306 ~n~l~~~---~p~~l~~l~~L~~L~L~~ 330 (409)
+|..+.. ---.+..+|+|++||..+
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeehhh
Confidence 7766522 112345667777777654
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.44 E-value=7e-05 Score=65.95 Aligned_cols=101 Identities=24% Similarity=0.241 Sum_probs=51.7
Q ss_pred CCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCc--cCCccCchhccCCCCCCEEeccCCcCCCCCchh---hcCCC
Q 038636 108 NLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGN--FFTGNIPVGITRLKKLQTLDLSHNSLSGIIPAQ---LSGLR 182 (409)
Q Consensus 108 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n--~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~---l~~l~ 182 (409)
.+..|+.|++.+..++.. ..+..+++|++|.++.| ++++.++.-...+++|+++++++|++.. +.. +..+.
T Consensus 41 ~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--lstl~pl~~l~ 116 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LSTLRPLKELE 116 (260)
T ss_pred cccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--ccccchhhhhc
Confidence 334445555555554421 23445666667777666 4444444444555666666666666652 222 23444
Q ss_pred CCCeEEeecCcCCCCCCC----CCCCCCcCEEeC
Q 038636 183 SLTALRLSHNAFSGKIPS----LTGAWQLHTLDL 212 (409)
Q Consensus 183 ~L~~L~L~~n~l~~~~~~----~~~l~~L~~L~l 212 (409)
+|..|++.+|..+..-.. +.-+++|++|+-
T Consensus 117 nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 117 NLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred chhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 555666666654432111 334455555543
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.37 E-value=0.00011 Score=75.51 Aligned_cols=83 Identities=27% Similarity=0.410 Sum_probs=39.2
Q ss_pred CCCCcEEEccCCcCCC-CCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEeccCCcCCC-CCchhhcCCCCCCe
Q 038636 109 LTELTTLDLSRNNFRG-PIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHNSLSG-IIPAQLSGLRSLTA 186 (409)
Q Consensus 109 l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~-~~p~~l~~l~~L~~ 186 (409)
+|.|++|.+++-.+.. .+-....++|+|..||+++++++ .+ ..++++++|+.|.+.+=.+.. ..-..+.++++|+.
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 4555555555544321 12222345555555555555555 22 445555555555555443331 11123445555555
Q ss_pred EEeecCc
Q 038636 187 LRLSHNA 193 (409)
Q Consensus 187 L~L~~n~ 193 (409)
||+|...
T Consensus 225 LDIS~~~ 231 (699)
T KOG3665|consen 225 LDISRDK 231 (699)
T ss_pred eeccccc
Confidence 5555543
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.29 E-value=0.00017 Score=63.59 Aligned_cols=93 Identities=24% Similarity=0.278 Sum_probs=65.4
Q ss_pred CCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEeccCC--cCCCCCchhhcCCCCCCeEEeecCcCCC--CCCC
Q 038636 125 PIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHN--SLSGIIPAQLSGLRSLTALRLSHNAFSG--KIPS 200 (409)
Q Consensus 125 ~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n--~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~~~ 200 (409)
.+......+..|+.|++.+..++ ++ ..+..+++|++|.++.| ...+.++.-...+++|+++++++|++.- .++.
T Consensus 34 ~~~gl~d~~~~le~ls~~n~glt-t~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p 111 (260)
T KOG2739|consen 34 KLGGLTDEFVELELLSVINVGLT-TL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP 111 (260)
T ss_pred Ccccccccccchhhhhhhcccee-ec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch
Confidence 34444556677777887777766 22 35667889999999999 5555555556667999999999998762 3334
Q ss_pred CCCCCCcCEEeCCCCCCCC
Q 038636 201 LTGAWQLHTLDLDSNQLYG 219 (409)
Q Consensus 201 ~~~l~~L~~L~l~~n~l~~ 219 (409)
+..+.+|..|++.+|..++
T Consensus 112 l~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 112 LKELENLKSLDLFNCSVTN 130 (260)
T ss_pred hhhhcchhhhhcccCCccc
Confidence 6667777778877776554
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.14 E-value=0.0015 Score=52.32 Aligned_cols=106 Identities=16% Similarity=0.195 Sum_probs=47.6
Q ss_pred ccCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchhhhcCCCCC
Q 038636 244 SLRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNL 323 (409)
Q Consensus 244 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L 323 (409)
.|.++++|+.+.+.. .+.......|..+++|+.+.+..+ +..+....+..+.+++.+.+.+ .+...-...|..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 455566666666653 344344445666666777776653 5555555666666677777654 3332233345556667
Q ss_pred CEEEccCCeecccCchhHhhhccCCccEEEccC
Q 038636 324 TSINLARNQLSGHIPKVYGAKLGSSWRSLFLDH 356 (409)
Q Consensus 324 ~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~ 356 (409)
+.+++..+ +.......|... . ++.+.+..
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~--l~~i~~~~ 112 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-N--LKEINIPS 112 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T----EEE-TT
T ss_pred cccccCcc-ccEEchhhhcCC-C--ceEEEECC
Confidence 77766554 332333334433 3 66666554
No 65
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.92 E-value=4.4e-05 Score=71.35 Aligned_cols=137 Identities=18% Similarity=0.058 Sum_probs=68.0
Q ss_pred CCCCCCEEEeeCCcCCC-CCchhh-cCCCCCcEEEccCCc-CCccCCCCC-CCCCCCCEEEccCCcCC--CcchhhhcCC
Q 038636 247 NLVNLKSLDLSSNRFTG-AISHEV-LTLPQVVSIDVSVNR-LTAIEMTTL-SGDTHLQELDVQGNLLR--GHLPINLVSL 320 (409)
Q Consensus 247 ~l~~L~~L~l~~n~l~~-~~~~~~-~~l~~L~~L~L~~n~-l~~~~~~~~-~~~~~L~~L~Ls~n~l~--~~~p~~l~~l 320 (409)
.+.+|+.|+.+++...+ .+-..+ .+.++|+.+-+..++ |+......+ .+++.|+.+++..+... +.+..--.++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 34566666666654321 111222 245667777776664 333222222 34566777777666543 1122222345
Q ss_pred CCCCEEEccCCee-cccCchhHhh--hccCCccEEEccCCcCc-ccCchhhhcCCCCCeEEcCCCcc
Q 038636 321 RNLTSINLARNQL-SGHIPKVYGA--KLGSSWRSLFLDHNFLW-GNLPPEFSSSITRIRGSLAKNCL 383 (409)
Q Consensus 321 ~~L~~L~L~~N~l-~~~~p~~~~~--~~~~~L~~L~L~~N~l~-~~~p~~~~~~~~L~~L~l~~N~l 383 (409)
+.|+.|.++++.. +...-..+.. .....|..+.|+++... ...-..+..++.|+.+++.+..-
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 6777777776633 3221111111 11123666777776543 23334455566677777666543
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.68 E-value=8.4e-05 Score=65.97 Aligned_cols=99 Identities=23% Similarity=0.265 Sum_probs=70.3
Q ss_pred CCcEEEEEccCCCCCCCCccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCc--hhccCCCCCCE
Q 038636 85 TSRITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIP--VGITRLKKLQT 162 (409)
Q Consensus 85 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p--~~l~~l~~L~~ 162 (409)
...|+.|+.-+++++.+ ....+++.|++|.|+-|+|+.. ..+..+++|++|.|..|.|. .+. ..+.++++|+.
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~ 92 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRT 92 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhh
Confidence 45667777777777764 2346788888888888888754 34778888888888888876 332 23577888888
Q ss_pred EeccCCcCCCCCch-----hhcCCCCCCeEE
Q 038636 163 LDLSHNSLSGIIPA-----QLSGLRSLTALR 188 (409)
Q Consensus 163 L~l~~n~l~~~~p~-----~l~~l~~L~~L~ 188 (409)
|-|..|.-.|.-+. .+.-+++|+.||
T Consensus 93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 88888877766543 245567777765
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.63 E-value=6.4e-05 Score=66.69 Aligned_cols=99 Identities=23% Similarity=0.241 Sum_probs=75.8
Q ss_pred CCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEeccCCcCCCCC-chhhcCCCCCCeE
Q 038636 109 LTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHNSLSGII-PAQLSGLRSLTAL 187 (409)
Q Consensus 109 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~-p~~l~~l~~L~~L 187 (409)
+.+.+.|+..++.++.. ....+++.|++|.|+-|+++.. ..+..+++|++|+|..|.+.... -..+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 56778889999988744 3457899999999999999843 34778999999999999887431 1245788999999
Q ss_pred EeecCcCCCCCCC------CCCCCCcCEEe
Q 038636 188 RLSHNAFSGKIPS------LTGAWQLHTLD 211 (409)
Q Consensus 188 ~L~~n~l~~~~~~------~~~l~~L~~L~ 211 (409)
.|..|.-.|.-+. +..+++|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 9999988776554 55677777776
No 68
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=96.53 E-value=0.01 Score=47.38 Aligned_cols=112 Identities=18% Similarity=0.257 Sum_probs=52.7
Q ss_pred CCcEEEeecccCCCCCc-ccCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEcc
Q 038636 227 SLRTLSLSHNLLSGHLS-SLRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQ 305 (409)
Q Consensus 227 ~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls 305 (409)
+|+.+.+.. .+..... .|..+++|+.+.+..+ +.......|..+++++.+.+.+ .+..+....+..+++|+.+++.
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEET
T ss_pred CCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccC
Confidence 444444442 2332223 5667777888887764 5544455666777788888865 5555455667777888888886
Q ss_pred CCcCCCcchhhhcCCCCCCEEEccCCeecccCchhHhhh
Q 038636 306 GNLLRGHLPINLVSLRNLTSINLARNQLSGHIPKVYGAK 344 (409)
Q Consensus 306 ~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~ 344 (409)
.+ +...-...|.++ +|+.+.+.. .+.......|.++
T Consensus 90 ~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~ 125 (129)
T PF13306_consen 90 SN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNC 125 (129)
T ss_dssp TT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG--
T ss_pred cc-ccEEchhhhcCC-CceEEEECC-CccEECCcccccc
Confidence 65 443334456665 778777765 3332333344433
No 69
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=96.48 E-value=0.00014 Score=68.11 Aligned_cols=289 Identities=17% Similarity=0.066 Sum_probs=155.4
Q ss_pred CcEEEEEccCCCCCCCCc--cccCCCCCCcEEEccCCc-CCCCCcccc-cCCCCCcEEeccCc-cCCccCch-hccCCCC
Q 038636 86 SRITAIYLDSSGYDGFLT--PSIGNLTELTTLDLSRNN-FRGPIPDTI-TDLRKLTTLYLPGN-FFTGNIPV-GITRLKK 159 (409)
Q Consensus 86 ~~v~~L~L~~~~l~~~~~--~~l~~l~~L~~L~L~~n~-l~~~~p~~l-~~l~~L~~L~L~~n-~~~~~~p~-~l~~l~~ 159 (409)
++++++.+.++.-.+.-+ ..-.++++++.|.+.++. ++...-..+ ..+++|++|++..| .++...-. --..+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 466777777665444322 223567777878777775 332211122 34677888888774 33322222 1235678
Q ss_pred CCEEeccCCc-CCCC-CchhhcCCCCCCeEEeecCcCCCCCCC----CCCCCCcCEEeCCCCC-CCCCCC----CCCCCC
Q 038636 160 LQTLDLSHNS-LSGI-IPAQLSGLRSLTALRLSHNAFSGKIPS----LTGAWQLHTLDLDSNQ-LYGNLP----KFPTSL 228 (409)
Q Consensus 160 L~~L~l~~n~-l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~~~----~~~l~~L~~L~l~~n~-l~~~~~----~~~~~L 228 (409)
|++|+++.+. +++. +-....++..++.+.+.+|.-.+ ... -.....+..+++..+. ++..-- .....|
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~-le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~l 296 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELE-LEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHAL 296 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhccccccc-HHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHh
Confidence 8888887653 2321 11223445555566555442110 000 1122234444443432 222211 223677
Q ss_pred cEEEeecccCCCCCc--cc-CCCCCCCEEEeeCCc-CCCCCchhh-cCCCCCcEEEccCCcCCccC-CCC-CCCCCCCCE
Q 038636 229 RTLSLSHNLLSGHLS--SL-RNLVNLKSLDLSSNR-FTGAISHEV-LTLPQVVSIDVSVNRLTAIE-MTT-LSGDTHLQE 301 (409)
Q Consensus 229 ~~L~l~~n~l~~~~~--~l-~~l~~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~-~~~-~~~~~~L~~ 301 (409)
+.+..+++...+..+ .+ .+..+|+.+.++.++ |+..-...+ .+.+.|+.+++..+...... ..+ -.+++.|+.
T Consensus 297 q~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ 376 (483)
T KOG4341|consen 297 QVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRV 376 (483)
T ss_pred hhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhcc
Confidence 888888765543322 22 466889999998886 332222222 25778888888877543211 112 256888999
Q ss_pred EEccCCcCCCcc-----hhhhcCCCCCCEEEccCCee-cccCchhHhhhccCCccEEEccCCcCcc--cCchhhhcCCCC
Q 038636 302 LDVQGNLLRGHL-----PINLVSLRNLTSINLARNQL-SGHIPKVYGAKLGSSWRSLFLDHNFLWG--NLPPEFSSSITR 373 (409)
Q Consensus 302 L~Ls~n~l~~~~-----p~~l~~l~~L~~L~L~~N~l-~~~~p~~~~~~~~~~L~~L~L~~N~l~~--~~p~~~~~~~~L 373 (409)
+.++++...... ...-..+..|+.+.|+++.. +...-+.+..... |+.+++-+++-.. .+-..-.+++++
T Consensus 377 lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~--Leri~l~~~q~vtk~~i~~~~~~lp~i 454 (483)
T KOG4341|consen 377 LSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRN--LERIELIDCQDVTKEAISRFATHLPNI 454 (483)
T ss_pred CChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcc--cceeeeechhhhhhhhhHHHHhhCccc
Confidence 999987654221 22224567889999999854 4444444555544 9999888874321 233344456665
Q ss_pred CeEE
Q 038636 374 IRGS 377 (409)
Q Consensus 374 ~~L~ 377 (409)
++..
T Consensus 455 ~v~a 458 (483)
T KOG4341|consen 455 KVHA 458 (483)
T ss_pred eehh
Confidence 5543
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.99 E-value=0.0026 Score=33.73 Aligned_cols=18 Identities=33% Similarity=0.381 Sum_probs=9.3
Q ss_pred ccEEEccCCcCcccCchhh
Q 038636 349 WRSLFLDHNFLWGNLPPEF 367 (409)
Q Consensus 349 L~~L~L~~N~l~~~~p~~~ 367 (409)
|++||+++|+++ .+|+.|
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 455555555555 455443
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.64 E-value=0.0058 Score=32.39 Aligned_cols=17 Identities=35% Similarity=0.620 Sum_probs=7.7
Q ss_pred CCEEEccCCeecccCchh
Q 038636 323 LTSINLARNQLSGHIPKV 340 (409)
Q Consensus 323 L~~L~L~~N~l~~~~p~~ 340 (409)
|++|+|++|+++ .+|..
T Consensus 2 L~~Ldls~n~l~-~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSS 18 (22)
T ss_dssp ESEEEETSSEES-EEGTT
T ss_pred ccEEECCCCcCE-eCChh
Confidence 444444444444 34433
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.10 E-value=0.0029 Score=62.99 Aligned_cols=12 Identities=50% Similarity=0.459 Sum_probs=6.6
Q ss_pred CCCcEEEeeccc
Q 038636 226 TSLRTLSLSHNL 237 (409)
Q Consensus 226 ~~L~~L~l~~n~ 237 (409)
+.|++|+++++.
T Consensus 295 ~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 295 PSLRELDLSGCH 306 (482)
T ss_pred CcccEEeeecCc
Confidence 445666655544
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.05 E-value=0.00061 Score=67.19 Aligned_cols=62 Identities=31% Similarity=0.277 Sum_probs=37.5
Q ss_pred CCCCEEeccCCcCCCCCch----hhcCCCCCCeEEeecCcCCCCCCC-----CCCC-CCcCEEeCCCCCCCC
Q 038636 158 KKLQTLDLSHNSLSGIIPA----QLSGLRSLTALRLSHNAFSGKIPS-----LTGA-WQLHTLDLDSNQLYG 219 (409)
Q Consensus 158 ~~L~~L~l~~n~l~~~~p~----~l~~l~~L~~L~L~~n~l~~~~~~-----~~~l-~~L~~L~l~~n~l~~ 219 (409)
..+..+.|.+|.+...... .+.....|+.|++++|.+.+.--. +... ..+++|++..|.+++
T Consensus 87 ~~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~ 158 (478)
T KOG4308|consen 87 ASLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTS 158 (478)
T ss_pred hhHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccc
Confidence 3478888888888755333 345677888888888887632111 2222 345566666665543
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.28 E-value=0.047 Score=26.82 Aligned_cols=12 Identities=42% Similarity=0.329 Sum_probs=4.3
Q ss_pred ccEEEccCCcCc
Q 038636 349 WRSLFLDHNFLW 360 (409)
Q Consensus 349 L~~L~L~~N~l~ 360 (409)
|+.|++++|+++
T Consensus 3 L~~L~l~~n~L~ 14 (17)
T PF13504_consen 3 LRTLDLSNNRLT 14 (17)
T ss_dssp -SEEEETSS--S
T ss_pred cCEEECCCCCCC
Confidence 444444444443
No 75
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.27 E-value=0.0021 Score=55.86 Aligned_cols=87 Identities=18% Similarity=0.169 Sum_probs=56.0
Q ss_pred CCCCCCCCCEEEccCCcCCCcchhhhcCCCCCCEEEccCCeecccCchhHhhhccCCccEEEccCCcCcccCchhhhcCC
Q 038636 292 TLSGDTHLQELDVQGNLLRGHLPINLVSLRNLTSINLARNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWGNLPPEFSSSI 371 (409)
Q Consensus 292 ~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~~~ 371 (409)
.+......+.||++.|++. ..-..|.-++.|..|+++.|++. ..|..+.+... ++.+++.+|..+ ..|-++...+
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e--~~~~~~~~n~~~-~~p~s~~k~~ 111 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRE--TVNAASHKNNHS-QQPKSQKKEP 111 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHH--HHHHHhhccchh-hCCccccccC
Confidence 3344456666666666655 23334444556666777777766 66666666655 666777777766 6677777777
Q ss_pred CCCeEEcCCCcc
Q 038636 372 TRIRGSLAKNCL 383 (409)
Q Consensus 372 ~L~~L~l~~N~l 383 (409)
+++++++.+|+|
T Consensus 112 ~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 112 HPKKNEQKKTEF 123 (326)
T ss_pred CcchhhhccCcc
Confidence 777777777766
No 76
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.22 E-value=0.00058 Score=67.33 Aligned_cols=180 Identities=26% Similarity=0.270 Sum_probs=103.1
Q ss_pred CCCCeEEeecCcCCCCCCC-----CCCCCCcCEEeCCCCCCCCCCC-------CC-CCCCcEEEeecccCCCCC----c-
Q 038636 182 RSLTALRLSHNAFSGKIPS-----LTGAWQLHTLDLDSNQLYGNLP-------KF-PTSLRTLSLSHNLLSGHL----S- 243 (409)
Q Consensus 182 ~~L~~L~L~~n~l~~~~~~-----~~~l~~L~~L~l~~n~l~~~~~-------~~-~~~L~~L~l~~n~l~~~~----~- 243 (409)
..+..+.|.+|.+...... +.....|+.|++++|.+.+.-- .. ...+++|++..|.+++.- .
T Consensus 87 ~~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~ 166 (478)
T KOG4308|consen 87 ASLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA 166 (478)
T ss_pred hhHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence 3477888888887654332 5667788889999998873321 11 145666777777665532 1
Q ss_pred ccCCCCCCCEEEeeCCcCCC----CCchhhc----CCCCCcEEEccCCcCCccCCC----CCCCCCC-CCEEEccCCcCC
Q 038636 244 SLRNLVNLKSLDLSSNRFTG----AISHEVL----TLPQVVSIDVSVNRLTAIEMT----TLSGDTH-LQELDVQGNLLR 310 (409)
Q Consensus 244 ~l~~l~~L~~L~l~~n~l~~----~~~~~~~----~l~~L~~L~L~~n~l~~~~~~----~~~~~~~-L~~L~Ls~n~l~ 310 (409)
.+.....++.++++.|.+.. .++..+. ...++++|++.+|.++..... .+...+. +.+|++..|.+.
T Consensus 167 ~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~ 246 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLG 246 (478)
T ss_pred HHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcc
Confidence 45556777777777777631 1222222 356677777777766632111 2223333 555777777766
Q ss_pred Cc----chhhhcCC-CCCCEEEccCCeecccCchhHhhhcc--CCccEEEccCCcCcc
Q 038636 311 GH----LPINLVSL-RNLTSINLARNQLSGHIPKVYGAKLG--SSWRSLFLDHNFLWG 361 (409)
Q Consensus 311 ~~----~p~~l~~l-~~L~~L~L~~N~l~~~~p~~~~~~~~--~~L~~L~L~~N~l~~ 361 (409)
+. ....+..+ ..++.++++.|.|+......+..... +.++++.+++|.+..
T Consensus 247 d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 247 DVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 43 22233444 56667777777776554444332210 236666777766654
No 77
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=92.84 E-value=0.055 Score=29.16 Aligned_cols=19 Identities=26% Similarity=0.455 Sum_probs=8.3
Q ss_pred CCCCEEEccCCeecccCch
Q 038636 321 RNLTSINLARNQLSGHIPK 339 (409)
Q Consensus 321 ~~L~~L~L~~N~l~~~~p~ 339 (409)
++|+.|+|++|+|++....
T Consensus 2 ~~L~~L~l~~n~i~~~g~~ 20 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGAS 20 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHH
Confidence 3455555555555544433
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.02 E-value=0.029 Score=47.91 Aligned_cols=34 Identities=12% Similarity=0.156 Sum_probs=16.2
Q ss_pred CcEEEccCCcCCccCCCCCCCCCCCCEEEccCCc
Q 038636 275 VVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNL 308 (409)
Q Consensus 275 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~ 308 (409)
++.++-++..|..+....+..++.++.|.+.++.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck 136 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCK 136 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheecccc
Confidence 4445555555544444444444444444444443
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.86 E-value=0.0045 Score=53.85 Aligned_cols=84 Identities=19% Similarity=0.220 Sum_probs=53.5
Q ss_pred CCcEEEEEccCCCCCCCCccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEe
Q 038636 85 TSRITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLD 164 (409)
Q Consensus 85 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~ 164 (409)
..+++.||++.+.+... -..|+-++.+..|+++.|.+. ..|..++.+..++.+++..|..+ ..|.+++..+.+++++
T Consensus 41 ~kr~tvld~~s~r~vn~-~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVNL-GKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHHhh-ccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 45677777776665432 233555566666777766665 56666666666777777666666 6666777777777777
Q ss_pred ccCCcCC
Q 038636 165 LSHNSLS 171 (409)
Q Consensus 165 l~~n~l~ 171 (409)
+-.|.+.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 6666554
No 80
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=90.73 E-value=0.12 Score=51.26 Aligned_cols=107 Identities=21% Similarity=0.140 Sum_probs=50.3
Q ss_pred CCCcEEEeeccc-CCC--CCcccCCCCCCCEEEeeCC-cCCCCC----chhhcCCCCCcEEEccCCc-CCccCCCCCC-C
Q 038636 226 TSLRTLSLSHNL-LSG--HLSSLRNLVNLKSLDLSSN-RFTGAI----SHEVLTLPQVVSIDVSVNR-LTAIEMTTLS-G 295 (409)
Q Consensus 226 ~~L~~L~l~~n~-l~~--~~~~l~~l~~L~~L~l~~n-~l~~~~----~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~-~ 295 (409)
+.|+.+.+.++. +.. ..+....++.|+.|+++++ ...... ......+++|+.|+++++. ++......+. .
T Consensus 188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~ 267 (482)
T KOG1947|consen 188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR 267 (482)
T ss_pred chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh
Confidence 556666665552 222 1234455666666666652 111111 1122334566666666655 4433322222 2
Q ss_pred CCCCCEEEccCCc-CCCcc-hhhhcCCCCCCEEEccCCe
Q 038636 296 DTHLQELDVQGNL-LRGHL-PINLVSLRNLTSINLARNQ 332 (409)
Q Consensus 296 ~~~L~~L~Ls~n~-l~~~~-p~~l~~l~~L~~L~L~~N~ 332 (409)
+++|+.|.+.++. +++.- -.....++.|+.|+++++.
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 5566666655555 34221 1222345556666666653
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.89 E-value=0.075 Score=45.45 Aligned_cols=81 Identities=19% Similarity=0.214 Sum_probs=45.1
Q ss_pred CCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCc-cCCCCC-CCCCCCCEEEccCC-cCCCcchhhhcCCCCCCEE
Q 038636 250 NLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTA-IEMTTL-SGDTHLQELDVQGN-LLRGHLPINLVSLRNLTSI 326 (409)
Q Consensus 250 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~-~~~~~L~~L~Ls~n-~l~~~~p~~l~~l~~L~~L 326 (409)
.++.+|-++..+..+-.+.+..++.++.|.+.++.--+ .-..-+ ...++|+.|++++| +|++.--.++..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 46667777776665555666666777777666654221 000001 13456666776655 4554444556666666666
Q ss_pred EccC
Q 038636 327 NLAR 330 (409)
Q Consensus 327 ~L~~ 330 (409)
.|.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 6654
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=86.89 E-value=0.61 Score=25.49 Aligned_cols=13 Identities=31% Similarity=0.391 Sum_probs=5.6
Q ss_pred CCcEEeccCccCC
Q 038636 135 KLTTLYLPGNFFT 147 (409)
Q Consensus 135 ~L~~L~L~~n~~~ 147 (409)
+|++|+|++|.+.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=86.89 E-value=0.61 Score=25.49 Aligned_cols=13 Identities=31% Similarity=0.391 Sum_probs=5.6
Q ss_pred CCcEEeccCccCC
Q 038636 135 KLTTLYLPGNFFT 147 (409)
Q Consensus 135 ~L~~L~L~~n~~~ 147 (409)
+|++|+|++|.+.
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444444
No 84
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=85.91 E-value=0.63 Score=25.43 Aligned_cols=12 Identities=42% Similarity=0.315 Sum_probs=5.0
Q ss_pred ccEEEccCCcCc
Q 038636 349 WRSLFLDHNFLW 360 (409)
Q Consensus 349 L~~L~L~~N~l~ 360 (409)
|++|+|++|+++
T Consensus 4 L~~L~L~~N~l~ 15 (26)
T smart00369 4 LRELDLSNNQLS 15 (26)
T ss_pred CCEEECCCCcCC
Confidence 444444444443
No 85
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=85.91 E-value=0.63 Score=25.43 Aligned_cols=12 Identities=42% Similarity=0.315 Sum_probs=5.0
Q ss_pred ccEEEccCCcCc
Q 038636 349 WRSLFLDHNFLW 360 (409)
Q Consensus 349 L~~L~L~~N~l~ 360 (409)
|++|+|++|+++
T Consensus 4 L~~L~L~~N~l~ 15 (26)
T smart00370 4 LRELDLSNNQLS 15 (26)
T ss_pred CCEEECCCCcCC
Confidence 444444444443
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=76.10 E-value=1.7 Score=23.88 Aligned_cols=16 Identities=31% Similarity=0.424 Sum_probs=10.2
Q ss_pred ccEEEccCCcCcccCch
Q 038636 349 WRSLFLDHNFLWGNLPP 365 (409)
Q Consensus 349 L~~L~L~~N~l~~~~p~ 365 (409)
|++|++++|+++ .+|+
T Consensus 4 L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 4 LKELNVSNNQLT-SLPE 19 (26)
T ss_pred cceeecCCCccc-cCcc
Confidence 666777777766 4554
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=74.72 E-value=1.9 Score=24.18 Aligned_cols=13 Identities=31% Similarity=0.641 Sum_probs=6.2
Q ss_pred CCCEEEccCCeec
Q 038636 322 NLTSINLARNQLS 334 (409)
Q Consensus 322 ~L~~L~L~~N~l~ 334 (409)
+|++|+|++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 3444444444444
No 88
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=73.87 E-value=7.1 Score=38.07 Aligned_cols=87 Identities=15% Similarity=0.025 Sum_probs=43.6
Q ss_pred CCCCEEEccCCcCCCcchhhh--cCCCCCCEEEccCCee---c--cc--CchhHhhhccCCccEEEccCCcCcccCchhh
Q 038636 297 THLQELDVQGNLLRGHLPINL--VSLRNLTSINLARNQL---S--GH--IPKVYGAKLGSSWRSLFLDHNFLWGNLPPEF 367 (409)
Q Consensus 297 ~~L~~L~Ls~n~l~~~~p~~l--~~l~~L~~L~L~~N~l---~--~~--~p~~~~~~~~~~L~~L~L~~N~l~~~~p~~~ 367 (409)
..+++|....|++.|+.-... ..-+..+.+++.+-.- - +. .+.........-+..+.++.|.+....-..+
T Consensus 354 ~R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~i 433 (553)
T KOG4242|consen 354 QRVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAI 433 (553)
T ss_pred eeeeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHH
Confidence 458889999988886654332 2335566666654321 1 00 0001100000125566666666654333333
Q ss_pred hcC---CCCCeEEcCCCcc
Q 038636 368 SSS---ITRIRGSLAKNCL 383 (409)
Q Consensus 368 ~~~---~~L~~L~l~~N~l 383 (409)
..+ +.+..|++++|.-
T Consensus 434 n~l~stqtl~kldisgn~m 452 (553)
T KOG4242|consen 434 NKLLSTQTLAKLDISGNGM 452 (553)
T ss_pred HhhccCcccccccccCCCc
Confidence 322 3367777777754
No 89
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=71.31 E-value=3.2 Score=22.87 Aligned_cols=12 Identities=25% Similarity=0.138 Sum_probs=5.6
Q ss_pred ccEEEccCCcCc
Q 038636 349 WRSLFLDHNFLW 360 (409)
Q Consensus 349 L~~L~L~~N~l~ 360 (409)
|+.|++++|+|+
T Consensus 4 L~~L~L~~NkI~ 15 (26)
T smart00365 4 LEELDLSQNKIK 15 (26)
T ss_pred cCEEECCCCccc
Confidence 444444444443
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=71.29 E-value=3.1 Score=41.26 Aligned_cols=37 Identities=30% Similarity=0.518 Sum_probs=18.9
Q ss_pred CCCCCcEEEccCCcCCccCCC-CC-CCCCCCCEEEccCC
Q 038636 271 TLPQVVSIDVSVNRLTAIEMT-TL-SGDTHLQELDVQGN 307 (409)
Q Consensus 271 ~l~~L~~L~L~~n~l~~~~~~-~~-~~~~~L~~L~Ls~n 307 (409)
+.+.+..++|++|++..+..- .+ ...++|+.|+|++|
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 455666666777766542211 11 22345555566555
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=67.54 E-value=3.7 Score=40.76 Aligned_cols=70 Identities=17% Similarity=0.111 Sum_probs=45.8
Q ss_pred CCCCCCCEEEccCCcCCCc--chhhhcCCCCCCEEEccCCeecccCchhHhhhccCCccEEEccCCcCcccC
Q 038636 294 SGDTHLQELDVQGNLLRGH--LPINLVSLRNLTSINLARNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWGNL 363 (409)
Q Consensus 294 ~~~~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~ 363 (409)
.+.+.+..++|++|++... +..--...|+|+.|+|++|...-....++.......|++|-+.+|.+....
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccch
Confidence 3457888899999998732 222223458999999999922212222334443344899999999998654
No 92
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=63.44 E-value=41 Score=33.07 Aligned_cols=85 Identities=14% Similarity=0.138 Sum_probs=40.7
Q ss_pred CCCEEEeeCCcCCCCCchh--hcCCCCCcEEEccCCcCCccCCC-----CC----CCCCCCCEEEccCCcCCCcchh---
Q 038636 250 NLKSLDLSSNRFTGAISHE--VLTLPQVVSIDVSVNRLTAIEMT-----TL----SGDTHLQELDVQGNLLRGHLPI--- 315 (409)
Q Consensus 250 ~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~-----~~----~~~~~L~~L~Ls~n~l~~~~p~--- 315 (409)
.+++|...+|.+.|..-.. +..-++.+.+++....-...... .. ....-+..+.++.+.+....-.
T Consensus 355 R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in 434 (553)
T KOG4242|consen 355 RVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAIN 434 (553)
T ss_pred eeeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHH
Confidence 3677777777766543322 22344555665543322111100 00 1122355666666666533222
Q ss_pred hhcCCCCCCEEEccCCeec
Q 038636 316 NLVSLRNLTSINLARNQLS 334 (409)
Q Consensus 316 ~l~~l~~L~~L~L~~N~l~ 334 (409)
....-+.+..|++++|...
T Consensus 435 ~l~stqtl~kldisgn~mg 453 (553)
T KOG4242|consen 435 KLLSTQTLAKLDISGNGMG 453 (553)
T ss_pred hhccCcccccccccCCCcc
Confidence 2333466777777777543
No 93
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=43.38 E-value=13 Score=20.12 Aligned_cols=10 Identities=30% Similarity=0.504 Sum_probs=4.6
Q ss_pred CCCEEEccCC
Q 038636 322 NLTSINLARN 331 (409)
Q Consensus 322 ~L~~L~L~~N 331 (409)
+|+.|+|++|
T Consensus 3 ~L~~L~l~~C 12 (26)
T smart00367 3 NLRELDLSGC 12 (26)
T ss_pred CCCEeCCCCC
Confidence 4444444444
Done!