Query 038636
Match_columns 409
No_of_seqs 564 out of 4080
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 22:50:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038636.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038636hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.7E-46 5.9E-51 392.5 25.4 346 26-392 6-366 (768)
2 4eco_A Uncharacterized protein 100.0 2.1E-44 7.1E-49 368.9 23.7 353 30-395 28-538 (636)
3 1ogq_A PGIP-2, polygalacturona 100.0 5.8E-44 2E-48 334.6 19.7 296 28-382 2-302 (313)
4 4ecn_A Leucine-rich repeat pro 100.0 1.1E-42 3.6E-47 363.5 21.8 345 30-395 267-778 (876)
5 3rgz_A Protein brassinosteroid 100.0 5.5E-42 1.9E-46 358.5 21.5 302 85-388 317-723 (768)
6 3v47_A TOLL-like receptor 5B a 100.0 3.8E-40 1.3E-44 324.5 24.2 300 85-386 29-412 (455)
7 2id5_A Lingo-1, leucine rich r 100.0 6.5E-38 2.2E-42 310.6 25.6 314 72-387 13-336 (477)
8 4eco_A Uncharacterized protein 100.0 5.9E-38 2E-42 321.1 21.0 301 85-390 205-586 (636)
9 3t6q_A CD180 antigen; protein- 100.0 1.9E-36 6.6E-41 308.7 27.7 295 87-385 255-561 (606)
10 3vq2_A TLR4, TOLL-like recepto 100.0 1.5E-36 5E-41 309.6 25.2 112 85-196 55-167 (606)
11 2z7x_B TOLL-like receptor 1, v 100.0 1.3E-36 4.6E-41 304.3 24.0 108 86-196 21-129 (520)
12 4ecn_A Leucine-rich repeat pro 100.0 5.1E-36 1.7E-40 313.2 26.2 298 85-390 447-826 (876)
13 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 8.2E-36 2.8E-40 301.4 26.1 294 85-388 51-491 (562)
14 3o6n_A APL1; leucine-rich repe 100.0 4.4E-36 1.5E-40 289.8 22.5 289 86-385 45-353 (390)
15 3oja_B Anopheles plasmodium-re 100.0 6.2E-36 2.1E-40 304.3 24.2 321 53-385 7-359 (597)
16 3v47_A TOLL-like receptor 5B a 100.0 3.8E-36 1.3E-40 295.9 21.8 284 110-395 30-397 (455)
17 3t6q_A CD180 antigen; protein- 100.0 1.6E-35 5.5E-40 301.9 25.4 308 85-395 32-427 (606)
18 2z7x_B TOLL-like receptor 1, v 100.0 1.9E-35 6.7E-40 295.9 24.6 296 89-395 3-470 (520)
19 3j0a_A TOLL-like receptor 5; m 100.0 1.9E-35 6.6E-40 312.0 24.9 297 85-383 23-374 (844)
20 2z81_A CD282 antigen, TOLL-lik 100.0 2.1E-35 7.3E-40 297.4 23.8 135 85-219 25-162 (549)
21 3vq2_A TLR4, TOLL-like recepto 100.0 3.3E-35 1.1E-39 299.6 25.2 92 85-176 79-171 (606)
22 2id5_A Lingo-1, leucine rich r 100.0 1E-34 3.6E-39 287.5 26.6 300 89-393 14-320 (477)
23 2z63_A TOLL-like receptor 4, v 100.0 8.4E-35 2.9E-39 294.3 23.0 113 85-197 51-164 (570)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.6E-34 5.3E-39 292.0 23.9 297 89-395 34-475 (562)
25 2z63_A TOLL-like receptor 4, v 100.0 1.3E-34 4.5E-39 292.9 22.1 295 85-383 75-530 (570)
26 1ziw_A TOLL-like receptor 3; i 100.0 4E-34 1.4E-38 295.4 24.9 296 85-382 24-364 (680)
27 4g8a_A TOLL-like receptor 4; l 100.0 1.7E-33 5.8E-38 287.9 28.6 303 85-389 51-585 (635)
28 1ziw_A TOLL-like receptor 3; i 100.0 1.2E-33 4E-38 292.0 27.6 297 88-386 250-624 (680)
29 4fmz_A Internalin; leucine ric 100.0 5.7E-33 1.9E-37 263.6 29.4 279 86-383 66-345 (347)
30 4fmz_A Internalin; leucine ric 100.0 7.2E-33 2.5E-37 262.9 29.4 291 85-395 43-335 (347)
31 2ft3_A Biglycan; proteoglycan, 100.0 1.8E-33 6.1E-38 265.6 23.6 287 87-382 34-331 (332)
32 4fcg_A Uncharacterized protein 100.0 1.1E-34 3.6E-39 273.4 15.0 283 29-360 24-314 (328)
33 1xku_A Decorin; proteoglycan, 100.0 5.8E-33 2E-37 261.8 24.8 286 88-382 33-330 (330)
34 1o6v_A Internalin A; bacterial 100.0 2E-32 6.9E-37 270.3 29.0 280 85-383 67-387 (466)
35 3j0a_A TOLL-like receptor 5; m 100.0 3.5E-33 1.2E-37 294.8 23.1 274 85-360 47-375 (844)
36 1xku_A Decorin; proteoglycan, 100.0 4.9E-32 1.7E-36 255.5 26.6 281 72-358 33-330 (330)
37 2ft3_A Biglycan; proteoglycan, 100.0 4.2E-32 1.4E-36 256.2 24.3 280 72-358 35-331 (332)
38 1o6v_A Internalin A; bacterial 100.0 9.9E-32 3.4E-36 265.3 27.7 259 85-361 89-389 (466)
39 3o6n_A APL1; leucine-rich repe 100.0 3.9E-32 1.3E-36 262.1 24.1 269 85-364 68-356 (390)
40 3oja_B Anopheles plasmodium-re 100.0 3.9E-32 1.3E-36 276.3 23.7 270 85-364 74-362 (597)
41 2z81_A CD282 antigen, TOLL-lik 100.0 3.4E-32 1.2E-36 274.0 21.3 191 95-288 14-211 (549)
42 3bz5_A Internalin-J, INLJ; leu 100.0 2.2E-31 7.4E-36 261.7 26.5 276 85-385 63-354 (457)
43 3bz5_A Internalin-J, INLJ; leu 100.0 1.6E-31 5.6E-36 262.6 25.6 284 85-395 41-341 (457)
44 1ogq_A PGIP-2, polygalacturona 100.0 1.1E-32 3.6E-37 258.1 15.1 232 110-388 50-287 (313)
45 1jl5_A Outer protein YOPM; leu 100.0 2.1E-30 7.1E-35 254.5 25.9 273 86-393 131-422 (454)
46 1jl5_A Outer protein YOPM; leu 100.0 3.7E-31 1.3E-35 259.9 18.4 211 85-310 10-250 (454)
47 4fcg_A Uncharacterized protein 100.0 1.2E-30 4E-35 245.8 19.8 234 108-383 79-313 (328)
48 2z80_A TOLL-like receptor 2, v 100.0 7.3E-31 2.5E-35 249.8 18.4 264 94-363 39-317 (353)
49 4g8a_A TOLL-like receptor 4; l 100.0 6.6E-30 2.2E-34 261.2 24.2 293 95-392 40-565 (635)
50 2z66_A Variable lymphocyte rec 100.0 4.1E-30 1.4E-34 239.7 19.8 257 110-369 28-296 (306)
51 2z80_A TOLL-like receptor 2, v 100.0 2.8E-30 9.6E-35 245.7 16.9 269 110-384 31-314 (353)
52 3o53_A Protein LRIM1, AGAP0063 100.0 5.9E-32 2E-36 253.5 4.2 238 133-382 33-273 (317)
53 1ozn_A Reticulon 4 receptor; N 100.0 4.8E-29 1.6E-33 230.1 22.1 254 89-369 14-270 (285)
54 2z66_A Variable lymphocyte rec 100.0 5.4E-30 1.9E-34 238.9 15.9 242 115-361 12-262 (306)
55 3zyi_A Leucine-rich repeat-con 100.0 8.2E-29 2.8E-33 243.5 23.6 246 111-384 55-303 (452)
56 3zyi_A Leucine-rich repeat-con 100.0 1.1E-28 3.7E-33 242.6 24.2 226 110-336 75-305 (452)
57 3zyj_A Leucine-rich repeat-con 100.0 2.6E-28 8.8E-33 239.1 25.0 225 110-335 64-293 (440)
58 3g06_A SSPH2 (leucine-rich rep 100.0 7.2E-28 2.5E-32 243.9 28.5 266 86-392 40-307 (622)
59 3zyj_A Leucine-rich repeat-con 100.0 1.5E-28 5.1E-33 240.8 22.6 247 111-384 44-292 (440)
60 1ozn_A Reticulon 4 receptor; N 100.0 3.7E-29 1.3E-33 230.9 15.4 238 85-343 31-270 (285)
61 1wwl_A Monocyte differentiatio 100.0 5.5E-31 1.9E-35 246.4 1.2 220 107-334 40-287 (312)
62 3oja_A Leucine-rich immune mol 100.0 1.3E-29 4.5E-34 251.1 11.0 233 135-379 35-270 (487)
63 1wwl_A Monocyte differentiatio 100.0 3E-30 1E-34 241.4 4.1 244 128-383 37-308 (312)
64 3o53_A Protein LRIM1, AGAP0063 100.0 1E-29 3.5E-34 238.2 5.8 264 87-365 11-281 (317)
65 1z7x_W Ribonuclease inhibitor; 100.0 1.6E-30 5.4E-35 256.2 -0.8 299 85-383 55-410 (461)
66 1z7x_W Ribonuclease inhibitor; 100.0 6.6E-30 2.3E-34 251.7 1.9 155 227-383 200-382 (461)
67 3oja_A Leucine-rich immune mol 99.9 1.6E-27 5.4E-32 236.2 13.6 217 156-383 32-249 (487)
68 3g06_A SSPH2 (leucine-rich rep 99.9 6.5E-26 2.2E-30 229.6 25.2 250 85-372 60-309 (622)
69 2o6q_A Variable lymphocyte rec 99.9 1.6E-25 5.5E-30 204.8 20.9 217 62-312 2-220 (270)
70 2z62_A TOLL-like receptor 4, v 99.9 3.1E-25 1.1E-29 203.5 18.9 218 115-383 12-236 (276)
71 3rfs_A Internalin B, repeat mo 99.9 3.4E-26 1.2E-30 209.5 12.3 226 111-372 20-247 (272)
72 2z62_A TOLL-like receptor 4, v 99.9 4.9E-25 1.7E-29 202.2 19.4 214 102-338 22-241 (276)
73 1p9a_G Platelet glycoprotein I 99.9 1.8E-24 6.1E-29 199.9 20.2 204 130-361 6-209 (290)
74 2o6q_A Variable lymphocyte rec 99.9 1.2E-23 4E-28 192.4 23.4 202 111-336 17-220 (270)
75 3rfs_A Internalin B, repeat mo 99.9 1.5E-24 5.1E-29 198.6 17.3 208 106-344 37-245 (272)
76 1p9a_G Platelet glycoprotein I 99.9 5.3E-24 1.8E-28 196.7 20.6 203 105-335 5-209 (290)
77 2ast_B S-phase kinase-associat 99.9 9.7E-27 3.3E-31 219.6 2.2 263 72-369 39-315 (336)
78 3goz_A Leucine-rich repeat-con 99.9 6.2E-26 2.1E-30 216.5 6.5 253 91-343 3-306 (362)
79 1h6u_A Internalin H; cell adhe 99.9 4.9E-24 1.7E-28 198.7 15.9 195 106-335 37-231 (308)
80 3goz_A Leucine-rich repeat-con 99.9 2.8E-25 9.7E-30 211.9 6.9 250 114-365 2-302 (362)
81 2ca6_A RAN GTPase-activating p 99.9 5.7E-26 1.9E-30 218.6 0.8 243 102-363 24-319 (386)
82 3m19_A Variable lymphocyte rec 99.9 5.1E-23 1.8E-27 186.1 19.3 174 208-383 17-191 (251)
83 2ca6_A RAN GTPase-activating p 99.9 2.3E-25 7.8E-30 214.4 3.7 251 125-383 23-315 (386)
84 2xwt_C Thyrotropin receptor; s 99.9 2.7E-23 9.4E-28 186.4 16.0 199 110-331 31-236 (239)
85 4glp_A Monocyte differentiatio 99.9 6.3E-24 2.1E-28 198.2 11.5 225 111-361 65-308 (310)
86 4glp_A Monocyte differentiatio 99.9 1.9E-23 6.5E-28 194.9 13.4 227 86-335 64-308 (310)
87 2ast_B S-phase kinase-associat 99.9 1.6E-24 5.4E-29 204.4 5.7 252 111-391 48-315 (336)
88 3m19_A Variable lymphocyte rec 99.9 2.9E-22 1E-26 181.1 19.8 179 112-336 16-194 (251)
89 2xwt_C Thyrotropin receptor; s 99.9 4.2E-23 1.4E-27 185.2 13.2 195 135-357 32-236 (239)
90 1h6u_A Internalin H; cell adhe 99.9 2E-22 6.8E-27 187.8 18.1 191 85-310 40-230 (308)
91 3ogk_B Coronatine-insensitive 99.9 1E-24 3.5E-29 221.3 2.5 294 87-383 139-525 (592)
92 3ogk_B Coronatine-insensitive 99.9 1.8E-24 6.1E-29 219.6 0.1 228 152-381 287-548 (592)
93 3cvr_A Invasion plasmid antige 99.9 2.4E-22 8.1E-27 201.2 14.6 212 56-320 34-253 (571)
94 3cvr_A Invasion plasmid antige 99.9 8.5E-22 2.9E-26 197.2 17.4 188 135-345 60-254 (571)
95 4ay9_X Follicle-stimulating ho 99.9 7.7E-21 2.6E-25 180.3 17.7 234 93-333 16-258 (350)
96 2o6s_A Variable lymphocyte rec 99.9 5.2E-21 1.8E-25 167.7 14.9 175 185-370 10-188 (208)
97 2o6s_A Variable lymphocyte rec 99.9 7.3E-21 2.5E-25 166.8 15.1 159 110-274 28-190 (208)
98 4ay9_X Follicle-stimulating ho 99.8 1.2E-20 3.9E-25 179.1 16.4 237 113-360 12-259 (350)
99 2xot_A Amphoterin-induced prot 99.8 1.8E-20 6.2E-25 178.5 15.4 179 208-388 21-206 (361)
100 2p1m_B Transport inhibitor res 99.8 2.3E-22 7.9E-27 204.1 1.0 295 85-383 104-518 (594)
101 1h6t_A Internalin B; cell adhe 99.8 6.5E-20 2.2E-24 169.3 16.4 81 248-334 133-213 (291)
102 1m9s_A Internalin B; cell inva 99.8 1.4E-20 4.8E-25 190.2 12.8 186 90-287 25-211 (605)
103 2v70_A SLIT-2, SLIT homolog 2 99.8 3.1E-20 1.1E-24 164.3 13.2 152 209-362 15-168 (220)
104 2v70_A SLIT-2, SLIT homolog 2 99.8 6.6E-20 2.3E-24 162.2 14.9 157 228-388 13-170 (220)
105 2p1m_B Transport inhibitor res 99.8 5.5E-22 1.9E-26 201.3 1.3 155 226-383 372-543 (594)
106 2v9t_B SLIT homolog 2 protein 99.8 9.4E-20 3.2E-24 161.2 14.8 152 208-361 14-166 (220)
107 2v9t_B SLIT homolog 2 protein 99.8 2.2E-19 7.4E-24 158.9 15.3 130 205-334 32-165 (220)
108 1h6t_A Internalin B; cell adhe 99.8 1.8E-19 6.3E-24 166.3 14.8 188 160-361 26-214 (291)
109 1m9s_A Internalin B; cell inva 99.8 1.5E-19 5.3E-24 182.6 14.8 170 85-264 42-212 (605)
110 3e6j_A Variable lymphocyte rec 99.8 4.7E-19 1.6E-23 157.7 16.3 154 207-363 21-175 (229)
111 3e6j_A Variable lymphocyte rec 99.8 9.2E-19 3.1E-23 155.8 16.8 153 227-384 20-172 (229)
112 4b8c_D Glucose-repressible alc 99.8 8.5E-21 2.9E-25 196.3 3.0 260 30-334 130-404 (727)
113 1dce_A Protein (RAB geranylger 99.8 3.5E-22 1.2E-26 200.7 -10.2 188 131-336 346-548 (567)
114 4ezg_A Putative uncharacterize 99.8 2.3E-18 7.9E-23 149.5 15.3 150 226-383 44-193 (197)
115 2xot_A Amphoterin-induced prot 99.8 1.6E-18 5.4E-23 165.0 14.2 100 113-215 21-122 (361)
116 1xeu_A Internalin C; cellular 99.8 1E-18 3.4E-23 158.9 10.5 169 109-311 18-186 (263)
117 4ezg_A Putative uncharacterize 99.8 3.4E-18 1.1E-22 148.5 12.9 131 85-219 43-173 (197)
118 1dce_A Protein (RAB geranylger 99.8 8.8E-22 3E-26 197.8 -11.2 203 155-378 346-567 (567)
119 1w8a_A SLIT protein; signaling 99.8 4.9E-18 1.7E-22 146.8 13.4 172 208-385 11-184 (192)
120 1xeu_A Internalin C; cellular 99.8 9.2E-19 3.1E-23 159.1 8.9 168 86-287 19-186 (263)
121 2ell_A Acidic leucine-rich nuc 99.7 1.5E-17 5.1E-22 140.4 10.7 138 247-388 22-165 (168)
122 1w8a_A SLIT protein; signaling 99.7 2.9E-17 1E-21 141.9 12.1 132 229-364 11-143 (192)
123 2je0_A Acidic leucine-rich nuc 99.7 3.4E-17 1.2E-21 135.4 10.7 130 247-380 15-149 (149)
124 4b8c_D Glucose-repressible alc 99.7 6.4E-18 2.2E-22 174.8 5.3 177 101-286 215-404 (727)
125 2ell_A Acidic leucine-rich nuc 99.7 1.2E-16 4.1E-21 134.9 9.7 133 85-219 23-161 (168)
126 2o6r_A Variable lymphocyte rec 99.7 8.3E-16 2.8E-20 130.9 14.7 131 208-338 10-141 (177)
127 2je0_A Acidic leucine-rich nuc 99.7 8.6E-17 2.9E-21 132.9 7.6 128 85-214 16-149 (149)
128 2wfh_A SLIT homolog 2 protein 99.7 5.2E-16 1.8E-20 134.1 12.2 128 229-361 13-140 (193)
129 2wfh_A SLIT homolog 2 protein 99.7 1.3E-15 4.5E-20 131.5 14.6 129 208-336 13-141 (193)
130 2o6r_A Variable lymphocyte rec 99.6 1.2E-15 4.2E-20 129.8 13.3 133 228-364 9-141 (177)
131 3sb4_A Hypothetical leucine ri 99.6 1.3E-16 4.6E-21 149.7 7.1 260 109-378 48-328 (329)
132 1a9n_A U2A', U2A'; complex (nu 99.6 1.8E-15 6.2E-20 128.7 9.7 133 244-383 14-152 (176)
133 3sb4_A Hypothetical leucine ri 99.6 8.2E-16 2.8E-20 144.3 8.2 258 85-354 48-328 (329)
134 1a9n_A U2A', U2A'; complex (nu 99.5 6.6E-15 2.3E-19 125.1 7.8 105 250-360 43-153 (176)
135 1ds9_A Outer arm dynein; leuci 99.5 1.2E-16 4.2E-21 138.7 -5.4 131 244-383 43-184 (198)
136 4fdw_A Leucine rich hypothetic 99.5 6.6E-13 2.3E-17 127.6 19.4 260 110-383 113-382 (401)
137 3g39_A Variable lymphocyte rec 99.5 2.2E-13 7.6E-18 115.0 12.3 106 229-336 12-117 (170)
138 1ds9_A Outer arm dynein; leuci 99.5 8.4E-16 2.9E-20 133.4 -4.0 131 246-383 15-152 (198)
139 4fdw_A Leucine rich hypothetic 99.5 3.7E-12 1.3E-16 122.4 20.3 242 105-359 131-382 (401)
140 2r9u_A Variable lymphocyte rec 99.5 4.9E-13 1.7E-17 113.3 12.4 105 229-335 15-119 (174)
141 3g39_A Variable lymphocyte rec 99.5 6.5E-13 2.2E-17 112.1 13.0 107 207-313 11-118 (170)
142 2r9u_A Variable lymphocyte rec 99.5 3.2E-13 1.1E-17 114.5 11.1 105 252-361 15-119 (174)
143 3un9_A NLR family member X1; l 99.4 4.7E-14 1.6E-18 134.3 -1.1 180 204-383 71-282 (372)
144 3un9_A NLR family member X1; l 99.3 3E-14 1E-18 135.7 -2.9 189 157-362 71-285 (372)
145 4fs7_A Uncharacterized protein 99.3 1.5E-10 5.3E-15 111.0 19.8 282 85-381 70-376 (394)
146 2ifg_A High affinity nerve gro 99.3 1.2E-11 4.3E-16 116.5 10.8 105 252-361 11-117 (347)
147 2ifg_A High affinity nerve gro 99.3 1.5E-11 5.3E-16 115.9 11.1 101 94-197 16-118 (347)
148 4fs7_A Uncharacterized protein 99.1 1.6E-09 5.6E-14 103.9 16.9 278 85-376 93-393 (394)
149 4gt6_A Cell surface protein; l 99.1 1.1E-08 3.8E-13 98.0 20.0 102 88-192 66-170 (394)
150 4gt6_A Cell surface protein; l 99.0 3.8E-08 1.3E-12 94.3 21.4 269 104-383 57-369 (394)
151 2ra8_A Uncharacterized protein 99.0 1.2E-10 4.2E-15 109.9 3.8 205 85-308 106-341 (362)
152 2ra8_A Uncharacterized protein 99.0 1.9E-09 6.4E-14 101.8 9.8 151 226-382 172-341 (362)
153 4h09_A Hypothetical leucine ri 98.8 6E-07 2.1E-11 85.3 20.2 283 86-381 46-343 (379)
154 1io0_A Tropomodulin; LRR prote 98.7 1.2E-08 4.2E-13 86.9 4.5 115 269-383 32-163 (185)
155 1io0_A Tropomodulin; LRR prote 98.6 9.7E-09 3.3E-13 87.5 2.7 118 244-361 31-165 (185)
156 3rw6_A Nuclear RNA export fact 98.5 2.9E-07 9.8E-12 82.6 7.7 79 297-377 170-257 (267)
157 4h09_A Hypothetical leucine ri 98.5 2.6E-05 8.9E-10 73.9 21.7 260 85-357 68-343 (379)
158 3rw6_A Nuclear RNA export fact 98.4 2.5E-07 8.7E-12 83.0 5.4 104 107-212 138-258 (267)
159 3e4g_A ATP synthase subunit S, 98.1 1.5E-06 5E-11 72.6 3.7 33 275-307 63-95 (176)
160 3e4g_A ATP synthase subunit S, 98.1 3E-06 1E-10 70.7 5.4 87 297-383 61-151 (176)
161 1pgv_A TMD-1, tropomodulin TMD 97.7 5.5E-05 1.9E-09 64.2 6.0 113 271-383 39-169 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.5 5.1E-05 1.7E-09 64.4 3.3 114 245-360 37-170 (197)
163 3rfe_A Platelet glycoprotein I 97.1 0.00068 2.3E-08 53.6 5.8 57 325-385 12-69 (130)
164 3rfe_A Platelet glycoprotein I 96.5 0.0046 1.6E-07 48.7 6.0 53 209-261 12-67 (130)
165 2lz0_A Uncharacterized protein 44.9 37 0.0013 24.5 5.0 45 98-143 8-52 (100)
166 2lz0_A Uncharacterized protein 42.6 36 0.0012 24.6 4.7 45 261-306 8-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.7e-46 Score=392.53 Aligned_cols=346 Identities=25% Similarity=0.322 Sum_probs=232.0
Q ss_pred ccCCChhhHHHHHHHHhhCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeecCCCCCCCCCcEEEEEccCCCCCCC---C
Q 038636 26 HSATLATDTQVLRLLKRSIDPNTIPRSSFLDSWDFKLDPCESSGGQFLGILCSIPSDNSTSRITAIYLDSSGYDGF---L 102 (409)
Q Consensus 26 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~w~~~~~~C~~~~~~w~gv~c~~~~~~~~~~v~~L~L~~~~l~~~---~ 102 (409)
++++.++|++||++||+++. |+. .+++|..+.+||. |.||+|+ .++|++|+|+++.+.|. +
T Consensus 6 ~~~~~~~~~~all~~k~~~~----~~~-~l~~W~~~~~~C~-----w~gv~C~------~~~v~~L~L~~~~l~g~~~~l 69 (768)
T 3rgz_A 6 PSQSLYREIHQLISFKDVLP----DKN-LLPDWSSNKNPCT-----FDGVTCR------DDKVTSIDLSSKPLNVGFSAV 69 (768)
T ss_dssp --CCHHHHHHHHHHHHTTCS----CTT-SSTTCCTTSCGGG-----STTEEEE------TTEEEEEECTTSCCCEEHHHH
T ss_pred cccCCHHHHHHHHHHHhhCC----Ccc-cccCCCCCCCCcC-----CcceEEC------CCcEEEEECCCCCcCCccCcc
Confidence 33446789999999999994 444 7899987789998 5999997 47999999999999997 7
Q ss_pred ccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCch--hccCCCCCCEEeccCCcCCCCCchhh-c
Q 038636 103 TPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPV--GITRLKKLQTLDLSHNSLSGIIPAQL-S 179 (409)
Q Consensus 103 ~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~--~l~~l~~L~~L~l~~n~l~~~~p~~l-~ 179 (409)
|+.+.++++|+.++++.+.+. .+|..++++++|++|+|++|.+.|.+|. .++++++|++|++++|.+++.+|..+ .
T Consensus 70 ~~~l~~L~~L~~l~~~~~~~~-~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 148 (768)
T 3rgz_A 70 SSSLLSLTGLESLFLSNSHIN-GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL 148 (768)
T ss_dssp HHHTTTCTTCCEEECTTSCEE-ECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCC
T ss_pred ChhHhccCcccccCCcCCCcC-CCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhc
Confidence 777777777777777666554 3456677777777777777777776666 67777777777777777766666554 6
Q ss_pred CCCCCCeEEeecCcCCCCCCC----CCCCCCcCEEeCCCCCCCCCCC-CCCCCCcEEEeecccCCCCCcccCCCCCCCEE
Q 038636 180 GLRSLTALRLSHNAFSGKIPS----LTGAWQLHTLDLDSNQLYGNLP-KFPTSLRTLSLSHNLLSGHLSSLRNLVNLKSL 254 (409)
Q Consensus 180 ~l~~L~~L~L~~n~l~~~~~~----~~~l~~L~~L~l~~n~l~~~~~-~~~~~L~~L~l~~n~l~~~~~~l~~l~~L~~L 254 (409)
++++|++|++++|.+++..+. +.++++|++|++++|.+.+..+ ...++|++|++++|.+++.+|.++++++|++|
T Consensus 149 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L 228 (768)
T 3rgz_A 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHL 228 (768)
T ss_dssp CCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEE
T ss_pred cCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEE
Confidence 677777777777777665553 4566667777777776666555 33466777777777766666666666677777
Q ss_pred EeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchhhhcCC-CCCCEEEccCCee
Q 038636 255 DLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSL-RNLTSINLARNQL 333 (409)
Q Consensus 255 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~L~~N~l 333 (409)
++++|.+++.+|..+..+++|++|++++|.+++..+.. .+++|++|++++|.+++.+|..+... ++|++|++++|++
T Consensus 229 ~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l 306 (768)
T 3rgz_A 229 DISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF 306 (768)
T ss_dssp ECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEE
T ss_pred ECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcC
Confidence 77777766666666666666776666666666533222 45566666666666665555555543 5666666666666
Q ss_pred cccCchhHhhhccCCccEEEccCCcCcccCchh-hhcCCCCCeEEcCCCcc--CCCchhhhc
Q 038636 334 SGHIPKVYGAKLGSSWRSLFLDHNFLWGNLPPE-FSSSITRIRGSLAKNCL--SCPETIRLC 392 (409)
Q Consensus 334 ~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~p~~-~~~~~~L~~L~l~~N~l--~~p~~l~~~ 392 (409)
++.+|..++.+.. |++|++++|.++|.+|.. +.++++|++|++++|.+ .+|..+..+
T Consensus 307 ~~~~p~~~~~l~~--L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l 366 (768)
T 3rgz_A 307 YGAVPPFFGSCSL--LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL 366 (768)
T ss_dssp EECCCGGGGGCTT--CCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHH
T ss_pred CCccchHHhcCCC--ccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhh
Confidence 6666655555544 666666666665555544 55555566666666655 555555444
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.1e-44 Score=368.93 Aligned_cols=353 Identities=20% Similarity=0.272 Sum_probs=230.1
Q ss_pred ChhhHHHHHHHHhhCCCC-CC---CCCCCCCCCCCCCCCCCCCCCceeeeecCCCCCCCCCcEEEEEccCCCCCCCCccc
Q 038636 30 LATDTQVLRLLKRSIDPN-TI---PRSSFLDSWDFKLDPCESSGGQFLGILCSIPSDNSTSRITAIYLDSSGYDGFLTPS 105 (409)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~-~~---~~~~~l~~w~~~~~~C~~~~~~w~gv~c~~~~~~~~~~v~~L~L~~~~l~~~~~~~ 105 (409)
...|++||.+++++++.. |. ++.....+|+.+.++|.| ..+.||+|+. .++|+.|+|+++++.|.+|++
T Consensus 28 ~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w--~~~~GV~C~~-----~~~V~~L~L~~~~l~g~lp~~ 100 (636)
T 4eco_A 28 YIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMW--GAQPGVSLNS-----NGRVTGLSLEGFGASGRVPDA 100 (636)
T ss_dssp HHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGT--TCCTTEEECT-----TCCEEEEECTTSCCEEEECGG
T ss_pred HHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccc--cCCCCeEEcC-----CCCEEEEEecCcccCCcCChH
Confidence 346899999999998532 11 111234589988888874 1128999986 589999999999999999999
Q ss_pred cCCCCCCcEEEccCCc----------------------------------------------------------------
Q 038636 106 IGNLTELTTLDLSRNN---------------------------------------------------------------- 121 (409)
Q Consensus 106 l~~l~~L~~L~L~~n~---------------------------------------------------------------- 121 (409)
++++++|++|+|++|.
T Consensus 101 l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 180 (636)
T 4eco_A 101 IGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSR 180 (636)
T ss_dssp GGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCC
T ss_pred HhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccc
Confidence 9999999999999884
Q ss_pred --------------CCCCCcccccCCCCCcEEeccCccCCcc-----------------Cchhcc--CCCCCCEEeccCC
Q 038636 122 --------------FRGPIPDTITDLRKLTTLYLPGNFFTGN-----------------IPVGIT--RLKKLQTLDLSHN 168 (409)
Q Consensus 122 --------------l~~~~p~~l~~l~~L~~L~L~~n~~~~~-----------------~p~~l~--~l~~L~~L~l~~n 168 (409)
++| +|..++++++|++|++++|.+++. +|..++ ++++|++|++++|
T Consensus 181 ~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n 259 (636)
T 4eco_A 181 ITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNC 259 (636)
T ss_dssp CCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECC
T ss_pred cchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCC
Confidence 334 788899999999999999999975 899988 9999999999999
Q ss_pred cCCCCCchhhcCCCCCCeEEeecCc-CCC-CCCC-CCCC------CCcCEEeCCCCCCCCCCCC---C--CCCCcEEEee
Q 038636 169 SLSGIIPAQLSGLRSLTALRLSHNA-FSG-KIPS-LTGA------WQLHTLDLDSNQLYGNLPK---F--PTSLRTLSLS 234 (409)
Q Consensus 169 ~l~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~~~-~~~l------~~L~~L~l~~n~l~~~~~~---~--~~~L~~L~l~ 234 (409)
.+.+.+|..++++++|++|++++|+ ++| .+|. ++.+ ++|++|++++|.++ .+|. + .++|++|+++
T Consensus 260 ~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~ 338 (636)
T 4eco_A 260 PNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECL 338 (636)
T ss_dssp TTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECC
T ss_pred cCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCc
Confidence 9999999999999999999999997 776 5554 3333 55555555555555 3332 1 1444555554
Q ss_pred cccCCCCCc-----------------------ccCCCCC-CCEEEeeCCcCCCCCchhhcCCC--CCcEEEccCCcCCcc
Q 038636 235 HNLLSGHLS-----------------------SLRNLVN-LKSLDLSSNRFTGAISHEVLTLP--QVVSIDVSVNRLTAI 288 (409)
Q Consensus 235 ~n~l~~~~~-----------------------~l~~l~~-L~~L~l~~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~ 288 (409)
+|.++|.+| .+..+++ |++|++++|.++ .+|..+...+ +|++|++++|.+++.
T Consensus 339 ~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~ 417 (636)
T 4eco_A 339 YNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSV 417 (636)
T ss_dssp SCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTT
T ss_pred CCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCc
Confidence 444443333 4444455 555555555555 4444444332 555555555555554
Q ss_pred CCCCCC-------CCCCCCEEEccCCcCCCcchhh-hcCCCCCCEEEccCCeecccCchhHhhhcc------CCccEEEc
Q 038636 289 EMTTLS-------GDTHLQELDVQGNLLRGHLPIN-LVSLRNLTSINLARNQLSGHIPKVYGAKLG------SSWRSLFL 354 (409)
Q Consensus 289 ~~~~~~-------~~~~L~~L~Ls~n~l~~~~p~~-l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~------~~L~~L~L 354 (409)
.+..+. .+++|++|++++|.++ .+|.. +..+++|++|+|++|+++ .+|........ ++|++|+|
T Consensus 418 ~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~L 495 (636)
T 4eco_A 418 DGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDL 495 (636)
T ss_dssp TTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEEC
T ss_pred chhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEEC
Confidence 444444 4455666666666665 33332 334556666666666655 44433222110 02666666
Q ss_pred cCCcCcccCchhhh--cCCCCCeEEcCCCcc-CCCchhhhccCC
Q 038636 355 DHNFLWGNLPPEFS--SSITRIRGSLAKNCL-SCPETIRLCHGG 395 (409)
Q Consensus 355 ~~N~l~~~~p~~~~--~~~~L~~L~l~~N~l-~~p~~l~~~~~~ 395 (409)
++|+++ .+|..+. .+++|+.|++++|++ .+|..+..+..+
T Consensus 496 s~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L 538 (636)
T 4eco_A 496 RFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTL 538 (636)
T ss_dssp CSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSC
T ss_pred cCCcCC-ccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCC
Confidence 666666 5666555 666666666666666 666665555443
No 3
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=5.8e-44 Score=334.64 Aligned_cols=296 Identities=29% Similarity=0.414 Sum_probs=207.4
Q ss_pred CCChhhHHHHHHHHhhCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeecCCCCCCCCCcEEEEEccCCCCCC--CCccc
Q 038636 28 ATLATDTQVLRLLKRSIDPNTIPRSSFLDSWDFKLDPCESSGGQFLGILCSIPSDNSTSRITAIYLDSSGYDG--FLTPS 105 (409)
Q Consensus 28 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~w~~~~~~C~~~~~~w~gv~c~~~~~~~~~~v~~L~L~~~~l~~--~~~~~ 105 (409)
.|.++|++||++||+++. ++. .+.+|..+.++|.. .|.||+|+... ..++|++|+++++.+++ .+|+.
T Consensus 2 ~c~~~~~~aL~~~k~~~~----~~~-~l~~W~~~~~~C~~---~w~gv~C~~~~--~~~~l~~L~L~~~~l~~~~~~~~~ 71 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLG----NPT-TLSSWLPTTDCCNR---TWLGVLCDTDT--QTYRVNNLDLSGLNLPKPYPIPSS 71 (313)
T ss_dssp CSCHHHHHHHHHHHHHTT----CCG-GGTTCCTTSCTTTT---CSTTEEECCSS--SCCCEEEEEEECCCCSSCEECCGG
T ss_pred CCCHHHHHHHHHHHHhcC----Ccc-cccCCCCCCCCCcC---CCcceEeCCCC--CCceEEEEECCCCCccCCcccChh
Confidence 367889999999999993 233 57899877889971 25999997521 12799999999999999 88999
Q ss_pred cCCCCCCcEEEccC-CcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEeccCCcCCCCCchhhcCCCCC
Q 038636 106 IGNLTELTTLDLSR-NNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSL 184 (409)
Q Consensus 106 l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L 184 (409)
++++++|++|++++ |.+.+.+|..|+++++|++|++++|.+++.+|..++++++|++|++++|.+++.+|..+..+++|
T Consensus 72 l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 151 (313)
T 1ogq_A 72 LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL 151 (313)
T ss_dssp GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTC
T ss_pred HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCC
Confidence 99999999999995 89998999999999999999999999999999999999999999999999998899989889999
Q ss_pred CeEEeecCcCCCCCCC-CCCCC-CcCEEeCCCCCCCCCCCCCCCCCcEEEeecccCCCCCcccCCCCCCCEEEeeCCcCC
Q 038636 185 TALRLSHNAFSGKIPS-LTGAW-QLHTLDLDSNQLYGNLPKFPTSLRTLSLSHNLLSGHLSSLRNLVNLKSLDLSSNRFT 262 (409)
Q Consensus 185 ~~L~L~~n~l~~~~~~-~~~l~-~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~ 262 (409)
++|++++|.+++.+|. +..++ +|++|++++|.+++.+|. .+..++ |++|++++|.++
T Consensus 152 ~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~--------------------~~~~l~-L~~L~Ls~N~l~ 210 (313)
T 1ogq_A 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP--------------------TFANLN-LAFVDLSRNMLE 210 (313)
T ss_dssp CEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCG--------------------GGGGCC-CSEEECCSSEEE
T ss_pred CeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCCh--------------------HHhCCc-ccEEECcCCccc
Confidence 9999888888876665 55444 444444444443322221 333333 666666666665
Q ss_pred CCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchhhhcCCCCCCEEEccCCeecccCchhHh
Q 038636 263 GAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLTSINLARNQLSGHIPKVYG 342 (409)
Q Consensus 263 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~ 342 (409)
+.+|..+..+++|+.|++++|.+++ .+|. +..+++|++|++++|++++.+|..+.
T Consensus 211 ~~~~~~~~~l~~L~~L~L~~N~l~~------------------------~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~ 265 (313)
T 1ogq_A 211 GDASVLFGSDKNTQKIHLAKNSLAF------------------------DLGK-VGLSKNLNGLDLRNNRIYGTLPQGLT 265 (313)
T ss_dssp ECCGGGCCTTSCCSEEECCSSEECC------------------------BGGG-CCCCTTCCEEECCSSCCEECCCGGGG
T ss_pred CcCCHHHhcCCCCCEEECCCCceee------------------------ecCc-ccccCCCCEEECcCCcccCcCChHHh
Confidence 5555555555555555555555554 3332 34444555555555555555555554
Q ss_pred hhccCCccEEEccCCcCcccCchhhhcCCCCCeEEcCCCc
Q 038636 343 AKLGSSWRSLFLDHNFLWGNLPPEFSSSITRIRGSLAKNC 382 (409)
Q Consensus 343 ~~~~~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~l~~N~ 382 (409)
.+.. |++|++++|+++|.+|.. .++++|+.+++++|+
T Consensus 266 ~l~~--L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 266 QLKF--LHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp GCTT--CCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred cCcC--CCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 4433 555555555555555543 445555555555554
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.1e-42 Score=363.51 Aligned_cols=345 Identities=21% Similarity=0.292 Sum_probs=245.0
Q ss_pred ChhhHHHHHHHHhhCCCCCCCCCCCCCCCCCCC-----CC--CCCC----CCce---eeeecCCCCCCCCCcEEEEEccC
Q 038636 30 LATDTQVLRLLKRSIDPNTIPRSSFLDSWDFKL-----DP--CESS----GGQF---LGILCSIPSDNSTSRITAIYLDS 95 (409)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~w~~~~-----~~--C~~~----~~~w---~gv~c~~~~~~~~~~v~~L~L~~ 95 (409)
...|++||++||+++.. + +|+.+. +| |.|. -..| .||+|+. .++|+.|+|++
T Consensus 267 ~~~d~~ALl~~k~~l~~----~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-----~~~V~~L~Ls~ 332 (876)
T 4ecn_A 267 YIKDYKALKAIWEALDG----K-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-----NGRVTGLSLAG 332 (876)
T ss_dssp HHHHHHHHHHHHHHTTG----G-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-----TSCEEEEECTT
T ss_pred chHHHHHHHHHHHHcCC----C-----CCCcCCCcccccCCccccccccccccccCcCceEecC-----CCCEEEEECcc
Confidence 45789999999999932 1 675443 56 7641 1123 8999986 58999999999
Q ss_pred CCCCCCCccccCCCCCCcEEEc-cCCcCCCC-------------------------------------------------
Q 038636 96 SGYDGFLTPSIGNLTELTTLDL-SRNNFRGP------------------------------------------------- 125 (409)
Q Consensus 96 ~~l~~~~~~~l~~l~~L~~L~L-~~n~l~~~------------------------------------------------- 125 (409)
+++.|.+|+.++++++|++|+| ++|.++|.
T Consensus 333 ~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~ 412 (876)
T 4ecn_A 333 FGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNP 412 (876)
T ss_dssp TCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCT
T ss_pred CCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCc
Confidence 9999999999999999999999 77654333
Q ss_pred ---------------------------CcccccCCCCCcEEeccCccCCc-----------------cCchhcc--CCCC
Q 038636 126 ---------------------------IPDTITDLRKLTTLYLPGNFFTG-----------------NIPVGIT--RLKK 159 (409)
Q Consensus 126 ---------------------------~p~~l~~l~~L~~L~L~~n~~~~-----------------~~p~~l~--~l~~ 159 (409)
+|..|+++++|++|+|++|.+++ .+|..++ ++++
T Consensus 413 ~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~ 492 (876)
T 4ecn_A 413 EMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKD 492 (876)
T ss_dssp TSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTT
T ss_pred cccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCC
Confidence 78889999999999999999998 3899988 9999
Q ss_pred CCEEeccCCcCCCCCchhhcCCCCCCeEEeecCc-CCC-CCCC-CCCC-------CCcCEEeCCCCCCCCCCCC---C--
Q 038636 160 LQTLDLSHNSLSGIIPAQLSGLRSLTALRLSHNA-FSG-KIPS-LTGA-------WQLHTLDLDSNQLYGNLPK---F-- 224 (409)
Q Consensus 160 L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~~~-~~~l-------~~L~~L~l~~n~l~~~~~~---~-- 224 (409)
|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|. ++.+ ++|++|++++|.++ .+|. +
T Consensus 493 L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~ 571 (876)
T 4ecn_A 493 LTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQK 571 (876)
T ss_dssp CCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTT
T ss_pred CCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhc
Confidence 9999999999999999999999999999999998 887 5664 4333 47888888888777 5554 2
Q ss_pred CCCCcEEEeecccCCCCCcccCCCCCCCEEEeeCCcCCCCCchhhcCCCC-CcEEEccCCcCCccCCCCCCC--------
Q 038636 225 PTSLRTLSLSHNLLSGHLSSLRNLVNLKSLDLSSNRFTGAISHEVLTLPQ-VVSIDVSVNRLTAIEMTTLSG-------- 295 (409)
Q Consensus 225 ~~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~-------- 295 (409)
.++|+.|++++|.++ .+|.++.+++|+.|++++|.++ .+|..+..+++ |+.|++++|+++.+ +..+..
T Consensus 572 L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~l-p~~~~~~~~~~L~~ 648 (876)
T 4ecn_A 572 MVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYI-PNIFNAKSVYVMGS 648 (876)
T ss_dssp CTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSC-CSCCCTTCSSCEEE
T ss_pred CCCCCEEECCCCCcc-cchhhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcC-chhhhccccCCCCE
Confidence 266777777777776 4446666677777777777666 56666666666 66666666666532 222211
Q ss_pred -----------------------CCCCCEEEccCCcCCCcchhhh-cCCCCCCEEEccCCeecccCchhHhhhcc-----
Q 038636 296 -----------------------DTHLQELDVQGNLLRGHLPINL-VSLRNLTSINLARNQLSGHIPKVYGAKLG----- 346 (409)
Q Consensus 296 -----------------------~~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~L~~N~l~~~~p~~~~~~~~----- 346 (409)
+++|+.|++++|.++ .+|..+ ..+++|+.|+|++|+++ .+|..+.....
T Consensus 649 L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~n 726 (876)
T 4ecn_A 649 VDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKN 726 (876)
T ss_dssp EECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTT
T ss_pred EECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccc
Confidence 224555555555555 344333 35666777777777666 55544332210
Q ss_pred -CCccEEEccCCcCcccCchhhh--cCCCCCeEEcCCCcc-CCCchhhhccCC
Q 038636 347 -SSWRSLFLDHNFLWGNLPPEFS--SSITRIRGSLAKNCL-SCPETIRLCHGG 395 (409)
Q Consensus 347 -~~L~~L~L~~N~l~~~~p~~~~--~~~~L~~L~l~~N~l-~~p~~l~~~~~~ 395 (409)
++|++|+|++|+++ .+|..+. .+++|+.|++++|++ .+|..+..+..+
T Consensus 727 l~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L 778 (876)
T 4ecn_A 727 TYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQL 778 (876)
T ss_dssp GGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTC
T ss_pred cCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCC
Confidence 03677777777776 6666665 667777777777776 666666655444
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5.5e-42 Score=358.50 Aligned_cols=302 Identities=35% Similarity=0.491 Sum_probs=246.6
Q ss_pred CCcEEEEEccCCCCCCCCccc-cCCCCCCcEEEccCCcCCCCCcccccC---------------------------CCCC
Q 038636 85 TSRITAIYLDSSGYDGFLTPS-IGNLTELTTLDLSRNNFRGPIPDTITD---------------------------LRKL 136 (409)
Q Consensus 85 ~~~v~~L~L~~~~l~~~~~~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~---------------------------l~~L 136 (409)
..+++.|++++|.++|.+|.. ++++++|++|++++|.+++.+|..+.+ +++|
T Consensus 317 l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L 396 (768)
T 3rgz_A 317 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 396 (768)
T ss_dssp CTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCC
T ss_pred CCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCc
Confidence 355677777777766666654 666666666666666666555555443 4556
Q ss_pred cEEeccCccCCccCchhccCCCCCCEEeccCCcCCCCCchhhcCCCCCCeEEeecCcCCCCCCC-CCCCCCcCEEeCCCC
Q 038636 137 TTLYLPGNFFTGNIPVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTALRLSHNAFSGKIPS-LTGAWQLHTLDLDSN 215 (409)
Q Consensus 137 ~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~-~~~l~~L~~L~l~~n 215 (409)
++|++++|.+++.+|..++++++|++|++++|.+++.+|..+..+++|++|++++|.+.+.+|. +..+++|++|++++|
T Consensus 397 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N 476 (768)
T 3rgz_A 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 476 (768)
T ss_dssp CEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred cEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCC
Confidence 6666666666667777788888888888888888888888888888888888888888887776 778888888888888
Q ss_pred CCCCCCCC-C--CCCCcEEEeecccCCCCCc-ccCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCCC
Q 038636 216 QLYGNLPK-F--PTSLRTLSLSHNLLSGHLS-SLRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMT 291 (409)
Q Consensus 216 ~l~~~~~~-~--~~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 291 (409)
.+++.+|. + .++|++|++++|.+++.+| .++.+++|++|++++|++++.+|..+..+++|+.|++++|.++|..+.
T Consensus 477 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~ 556 (768)
T 3rgz_A 477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCG
T ss_pred cccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCCh
Confidence 88888773 2 3788899999999888877 788888999999999999888898899999999999998888754332
Q ss_pred ----------------------------------------------------------------------CCCCCCCCCE
Q 038636 292 ----------------------------------------------------------------------TLSGDTHLQE 301 (409)
Q Consensus 292 ----------------------------------------------------------------------~~~~~~~L~~ 301 (409)
.+..+++|+.
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~ 636 (768)
T 3rgz_A 557 AMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF 636 (768)
T ss_dssp GGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCE
T ss_pred HHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccE
Confidence 2334578999
Q ss_pred EEccCCcCCCcchhhhcCCCCCCEEEccCCeecccCchhHhhhccCCccEEEccCCcCcccCchhhhcCCCCCeEEcCCC
Q 038636 302 LDVQGNLLRGHLPINLVSLRNLTSINLARNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWGNLPPEFSSSITRIRGSLAKN 381 (409)
Q Consensus 302 L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~l~~N 381 (409)
|++++|+++|.+|..++++++|+.|+|++|+++|.+|..++.+.. |++|||++|+++|.+|..+.+++.|++|++++|
T Consensus 637 LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~--L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N 714 (768)
T 3rgz_A 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG--LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714 (768)
T ss_dssp EECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT--CCEEECCSSCCEECCCGGGGGCCCCSEEECCSS
T ss_pred EECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCC--CCEEECCCCcccCcCChHHhCCCCCCEEECcCC
Confidence 999999999999999999999999999999999999999999977 999999999999999999999999999999999
Q ss_pred cc--CCCch
Q 038636 382 CL--SCPET 388 (409)
Q Consensus 382 ~l--~~p~~ 388 (409)
++ .+|..
T Consensus 715 ~l~g~iP~~ 723 (768)
T 3rgz_A 715 NLSGPIPEM 723 (768)
T ss_dssp EEEEECCSS
T ss_pred cccccCCCc
Confidence 99 77754
No 6
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.8e-40 Score=324.53 Aligned_cols=300 Identities=22% Similarity=0.241 Sum_probs=263.4
Q ss_pred CCcEEEEEccCCCCCCCCccccCCCCCCcEEEccCCcCCCCC-cccccCCCCCcEEeccCccCCccCchhccCCCCCCEE
Q 038636 85 TSRITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPI-PDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTL 163 (409)
Q Consensus 85 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L 163 (409)
..++++|++++|.+++..|..|+++++|++|++++|.+.+.+ +..|.++++|++|++++|.+++..|..|+++++|++|
T Consensus 29 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 29 PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence 468999999999999988899999999999999999987665 5678999999999999999998889999999999999
Q ss_pred eccCCcCCCCCchh--hcCCCCCCeEEeecCcCCCCCCC--CCCCCCcCEEeCCCCCCCCCCCCCC--------------
Q 038636 164 DLSHNSLSGIIPAQ--LSGLRSLTALRLSHNAFSGKIPS--LTGAWQLHTLDLDSNQLYGNLPKFP-------------- 225 (409)
Q Consensus 164 ~l~~n~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~-------------- 225 (409)
++++|.+++.+|.. +..+++|++|++++|.+++..|. +..+++|++|++++|.+.+..+...
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~ 188 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS 188 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECT
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccc
Confidence 99999998866665 88999999999999999988776 7899999999999999887665211
Q ss_pred -----------------------CCCcEEEeecccCCCCCc-ccC-----------------------------------
Q 038636 226 -----------------------TSLRTLSLSHNLLSGHLS-SLR----------------------------------- 246 (409)
Q Consensus 226 -----------------------~~L~~L~l~~n~l~~~~~-~l~----------------------------------- 246 (409)
++|++|++++|.+++..+ .+.
T Consensus 189 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 268 (455)
T 3v47_A 189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268 (455)
T ss_dssp TCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTT
T ss_pred cCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccc
Confidence 467888888887764332 110
Q ss_pred ----CCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchhhhcCCCC
Q 038636 247 ----NLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRN 322 (409)
Q Consensus 247 ----~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~ 322 (409)
..++|+.|++++|.+++..|..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..|..+..+++
T Consensus 269 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 348 (455)
T 3v47_A 269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDK 348 (455)
T ss_dssp TGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTT
T ss_pred cccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCccc
Confidence 1257999999999999888999999999999999999999988888999999999999999999888999999999
Q ss_pred CCEEEccCCeecccCchhHhhhccCCccEEEccCCcCcccCchhhhcCCCCCeEEcCCCcc--CCC
Q 038636 323 LTSINLARNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWGNLPPEFSSSITRIRGSLAKNCL--SCP 386 (409)
Q Consensus 323 L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~l~~N~l--~~p 386 (409)
|++|+|++|++++..|..+..++. |++|++++|++++..+..+..+++|++|++++|++ .||
T Consensus 349 L~~L~Ls~N~l~~~~~~~~~~l~~--L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 349 LEVLDLSYNHIRALGDQSFLGLPN--LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTT--CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCEEECCCCcccccChhhcccccc--ccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 999999999999998999988866 99999999999976566678999999999999999 666
No 7
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=6.5e-38 Score=310.56 Aligned_cols=314 Identities=21% Similarity=0.179 Sum_probs=279.6
Q ss_pred eeeeecCCCC-----CCCCCcEEEEEccCCCCCCCCccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccC
Q 038636 72 FLGILCSIPS-----DNSTSRITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFF 146 (409)
Q Consensus 72 w~gv~c~~~~-----~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~ 146 (409)
|..|.|.... ..-..+++.|+|++|.+++..+..|.++++|++|+|++|.+++..|..|.++++|++|+|++|.+
T Consensus 13 ~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l 92 (477)
T 2id5_A 13 DRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL 92 (477)
T ss_dssp TTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC
Confidence 4567775311 11246889999999999998888999999999999999999988899999999999999999999
Q ss_pred CccCchhccCCCCCCEEeccCCcCCCCCchhhcCCCCCCeEEeecCcCCCCCCC-CCCCCCcCEEeCCCCCCCCCCC---
Q 038636 147 TGNIPVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTALRLSHNAFSGKIPS-LTGAWQLHTLDLDSNQLYGNLP--- 222 (409)
Q Consensus 147 ~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~--- 222 (409)
++..+..|.++++|++|++++|.+++..|..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+++..+
T Consensus 93 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 172 (477)
T 2id5_A 93 KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEAL 172 (477)
T ss_dssp CSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHH
T ss_pred CccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHh
Confidence 955555689999999999999999988899999999999999999999977665 8999999999999999987655
Q ss_pred CCCCCCcEEEeecccCCCCCc-ccCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCE
Q 038636 223 KFPTSLRTLSLSHNLLSGHLS-SLRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQE 301 (409)
Q Consensus 223 ~~~~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~ 301 (409)
...++|+.|++++|.+.+..+ .+..+++|+.|++++|.+.+.++.......+|++|++++|++++.+...+..+++|+.
T Consensus 173 ~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 252 (477)
T 2id5_A 173 SHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRF 252 (477)
T ss_dssp TTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCE
T ss_pred cccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCe
Confidence 334899999999999998877 8999999999999999988888888878889999999999999866567889999999
Q ss_pred EEccCCcCCCcchhhhcCCCCCCEEEccCCeecccCchhHhhhccCCccEEEccCCcCcccCchhhhcCCCCCeEEcCCC
Q 038636 302 LDVQGNLLRGHLPINLVSLRNLTSINLARNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWGNLPPEFSSSITRIRGSLAKN 381 (409)
Q Consensus 302 L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~l~~N 381 (409)
|++++|.+++..+..+..+++|+.|+|++|++++..|..|..+.. |++|+|++|++++..+..|..+++|+.|++++|
T Consensus 253 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~--L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 330 (477)
T 2id5_A 253 LNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNY--LRVLNVSGNQLTTLEESVFHSVGNLETLILDSN 330 (477)
T ss_dssp EECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTT--CCEEECCSSCCSCCCGGGBSCGGGCCEEECCSS
T ss_pred eECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCccc--CCEEECCCCcCceeCHhHcCCCcccCEEEccCC
Confidence 999999999888888999999999999999999999999988866 999999999999766677889999999999999
Q ss_pred ccCCCc
Q 038636 382 CLSCPE 387 (409)
Q Consensus 382 ~l~~p~ 387 (409)
++.|..
T Consensus 331 ~l~c~c 336 (477)
T 2id5_A 331 PLACDC 336 (477)
T ss_dssp CEECSG
T ss_pred CccCcc
Confidence 994433
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=5.9e-38 Score=321.13 Aligned_cols=301 Identities=21% Similarity=0.285 Sum_probs=227.6
Q ss_pred CCcEEEEEccCCCCCCC-----------------CccccC--CCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCcc
Q 038636 85 TSRITAIYLDSSGYDGF-----------------LTPSIG--NLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNF 145 (409)
Q Consensus 85 ~~~v~~L~L~~~~l~~~-----------------~~~~l~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 145 (409)
..+++.|+|++|.++|. +|+.++ ++++|++|++++|.+.+.+|..++++++|++|++++|.
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~ 284 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR 284 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence 57899999999999996 899998 99999999999999999999999999999999999998
Q ss_pred -CCc-cCchhccCC------CCCCEEeccCCcCCCCCch--hhcCCCCCCeEEeecCcCCCCCCCCCCCCCcCEEeCCCC
Q 038636 146 -FTG-NIPVGITRL------KKLQTLDLSHNSLSGIIPA--QLSGLRSLTALRLSHNAFSGKIPSLTGAWQLHTLDLDSN 215 (409)
Q Consensus 146 -~~~-~~p~~l~~l------~~L~~L~l~~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n 215 (409)
++| .+|..++++ ++|++|++++|.++ .+|. .++++++|++|++++|.++|.+|.+..+++|++|++++|
T Consensus 285 ~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N 363 (636)
T 4eco_A 285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYN 363 (636)
T ss_dssp TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSS
T ss_pred CCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCC
Confidence 998 899888876 89999999999998 7888 899999999999999988877776555555555555555
Q ss_pred CCCC-----------------------CCCCC-C----CCCcEEEeecccCCCCCc-ccC-------CCCCCCEEEeeCC
Q 038636 216 QLYG-----------------------NLPKF-P----TSLRTLSLSHNLLSGHLS-SLR-------NLVNLKSLDLSSN 259 (409)
Q Consensus 216 ~l~~-----------------------~~~~~-~----~~L~~L~l~~n~l~~~~~-~l~-------~l~~L~~L~l~~n 259 (409)
.++. .+|.. . ++|++|++++|.+++..| .+. .+++|++|++++|
T Consensus 364 ~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N 443 (636)
T 4eco_A 364 QITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN 443 (636)
T ss_dssp EEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS
T ss_pred ccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCC
Confidence 5441 22311 1 145555555555555444 444 4556666666666
Q ss_pred cCCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCC-------CCCCEEEccCCcCCCcchhhhc--CCCCCCEEEccC
Q 038636 260 RFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGD-------THLQELDVQGNLLRGHLPINLV--SLRNLTSINLAR 330 (409)
Q Consensus 260 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~-------~~L~~L~Ls~n~l~~~~p~~l~--~l~~L~~L~L~~ 330 (409)
.+++..+..+..+++|++|++++|+++.++...+... ++|++|++++|+++ .+|..+. .+++|+.|+|++
T Consensus 444 ~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~ 522 (636)
T 4eco_A 444 QISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSY 522 (636)
T ss_dssp CCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCS
T ss_pred ccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCC
Confidence 6663333334456777777777777775443333322 27888888888888 6777776 888888888888
Q ss_pred CeecccCchhHhhhccCCccEEEc------cCCcCcccCchhhhcCCCCCeEEcCCCcc-CCCchhh
Q 038636 331 NQLSGHIPKVYGAKLGSSWRSLFL------DHNFLWGNLPPEFSSSITRIRGSLAKNCL-SCPETIR 390 (409)
Q Consensus 331 N~l~~~~p~~~~~~~~~~L~~L~L------~~N~l~~~~p~~~~~~~~L~~L~l~~N~l-~~p~~l~ 390 (409)
|++++ +|..+..+.. |++|+| ++|++.+.+|..+.++++|+.|++++|.+ .+|..+.
T Consensus 523 N~l~~-ip~~~~~l~~--L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~ 586 (636)
T 4eco_A 523 NSFSK-FPTQPLNSST--LKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKIT 586 (636)
T ss_dssp SCCSS-CCCGGGGCSS--CCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC
T ss_pred CCCCC-cChhhhcCCC--CCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHhHh
Confidence 88886 7888887765 888888 56778888888888888888888888888 7777643
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.9e-36 Score=308.72 Aligned_cols=295 Identities=21% Similarity=0.222 Sum_probs=270.6
Q ss_pred cEEEEEccCCCCCCCCccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEecc
Q 038636 87 RITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLS 166 (409)
Q Consensus 87 ~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~ 166 (409)
+++.|+++++.+++..+..|+++++|++|++++|.++ .+|..+.++++|++|++++|.+.+..|..+.++++|++|+++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence 7999999999999988888999999999999999998 789999999999999999999998888899999999999999
Q ss_pred CCcCCCCCchh-hcCCCCCCeEEeecCcCCCCC--CC-CCCCCCcCEEeCCCCCCCCCCCCC---CCCCcEEEeecccCC
Q 038636 167 HNSLSGIIPAQ-LSGLRSLTALRLSHNAFSGKI--PS-LTGAWQLHTLDLDSNQLYGNLPKF---PTSLRTLSLSHNLLS 239 (409)
Q Consensus 167 ~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~--~~-~~~l~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~ 239 (409)
+|.+.+.+|.. +..+++|++|++++|.+.+.. +. +..+++|++|++++|.+.+..|.. .++|++|++++|.+.
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 413 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence 99999777664 899999999999999998764 43 889999999999999998877732 389999999999998
Q ss_pred CCCc--ccCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccC---CCCCCCCCCCCEEEccCCcCCCcch
Q 038636 240 GHLS--SLRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIE---MTTLSGDTHLQELDVQGNLLRGHLP 314 (409)
Q Consensus 240 ~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~~~~L~~L~Ls~n~l~~~~p 314 (409)
+..+ .+..+++|+.|++++|.+++..|..+..+++|++|++++|++++.. +..+..+++|++|++++|.+++..|
T Consensus 414 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 493 (606)
T 3t6q_A 414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ 493 (606)
T ss_dssp CCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECT
T ss_pred CcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccCh
Confidence 8765 5899999999999999999999999999999999999999998732 2457889999999999999998889
Q ss_pred hhhcCCCCCCEEEccCCeecccCchhHhhhccCCccEEEccCCcCcccCchhhhcCCCCCeEEcCCCccCC
Q 038636 315 INLVSLRNLTSINLARNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWGNLPPEFSSSITRIRGSLAKNCLSC 385 (409)
Q Consensus 315 ~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~l~~N~l~~ 385 (409)
..++.+++|+.|+|++|++++..|..+..+.. | +|++++|++++..|..+..+++|+.+++++|++.|
T Consensus 494 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~--L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 561 (606)
T 3t6q_A 494 HAFTSLKMMNHVDLSHNRLTSSSIEALSHLKG--I-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561 (606)
T ss_dssp TTTTTCTTCCEEECCSSCCCGGGGGGGTTCCS--C-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEEC
T ss_pred hhhccccCCCEEECCCCccCcCChhHhCcccc--c-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccc
Confidence 99999999999999999999999999998876 9 99999999998888889999999999999999943
No 10
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.5e-36 Score=309.59 Aligned_cols=112 Identities=22% Similarity=0.262 Sum_probs=66.0
Q ss_pred CCcEEEEEccCCCCCCCCccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEe
Q 038636 85 TSRITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLD 164 (409)
Q Consensus 85 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~ 164 (409)
..+++.|++++|.+++..|..|+++++|++|++++|.+++..|..|+++++|++|++++|.+.+..|..++++++|++|+
T Consensus 55 l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 134 (606)
T 3vq2_A 55 FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLN 134 (606)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEE
T ss_pred CccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEe
Confidence 34555555555555555555555666666666666665555555566666666666666665544445566666666666
Q ss_pred ccCCcCCC-CCchhhcCCCCCCeEEeecCcCCC
Q 038636 165 LSHNSLSG-IIPAQLSGLRSLTALRLSHNAFSG 196 (409)
Q Consensus 165 l~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~ 196 (409)
+++|.+++ .+|..++++++|++|++++|.+++
T Consensus 135 L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 135 VAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp CCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred CCCCcccceechHhHhhcCCCCEEEccCCccee
Confidence 66666654 346666666666666666665543
No 11
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.3e-36 Score=304.31 Aligned_cols=108 Identities=22% Similarity=0.219 Sum_probs=89.0
Q ss_pred CcEEEEEccCCCCCCCCccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEec
Q 038636 86 SRITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDL 165 (409)
Q Consensus 86 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l 165 (409)
.++++|++++|.+++..|..|.++++|++|++++|.+++..|..|+++++|++|++++|.++ .+|.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence 67888888888888877778888888888888888888777888888888888888888888 67766 7888888888
Q ss_pred cCCcCCC-CCchhhcCCCCCCeEEeecCcCCC
Q 038636 166 SHNSLSG-IIPAQLSGLRSLTALRLSHNAFSG 196 (409)
Q Consensus 166 ~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~ 196 (409)
++|.+++ .+|..++++++|++|++++|.+.+
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~ 129 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK 129 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG
T ss_pred cCCccccccchhhhccCCcceEEEecCcccch
Confidence 8888876 467888888888888888887754
No 12
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5.1e-36 Score=313.20 Aligned_cols=298 Identities=24% Similarity=0.327 Sum_probs=231.5
Q ss_pred CCcEEEEEccCCCCCC-----------------CCccccC--CCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCcc
Q 038636 85 TSRITAIYLDSSGYDG-----------------FLTPSIG--NLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNF 145 (409)
Q Consensus 85 ~~~v~~L~L~~~~l~~-----------------~~~~~l~--~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 145 (409)
..+++.|+|++|.+++ .+|+.++ ++++|++|+|++|.+.+.+|..|+++++|++|++++|.
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~ 526 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR 526 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence 5789999999999998 3888888 99999999999999999999999999999999999998
Q ss_pred -CCc-cCchhccCCC-------CCCEEeccCCcCCCCCch--hhcCCCCCCeEEeecCcCCCCCCCCCCCCCcCEEeCCC
Q 038636 146 -FTG-NIPVGITRLK-------KLQTLDLSHNSLSGIIPA--QLSGLRSLTALRLSHNAFSGKIPSLTGAWQLHTLDLDS 214 (409)
Q Consensus 146 -~~~-~~p~~l~~l~-------~L~~L~l~~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~ 214 (409)
++| .+|..+++++ +|++|++++|.++ .+|. .++++++|++|++++|.++ .+|.+..+++|+.|++++
T Consensus 527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~ 604 (876)
T 4ecn_A 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDY 604 (876)
T ss_dssp TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEESEEECCS
T ss_pred CcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cchhhcCCCcceEEECcC
Confidence 888 7888776655 8999999999888 7887 8888888888888888887 677777777788888887
Q ss_pred CCCCCCCC-CCC--CC-CcEEEeecccCCCCCcccCCC-------------------------------CCCCEEEeeCC
Q 038636 215 NQLYGNLP-KFP--TS-LRTLSLSHNLLSGHLSSLRNL-------------------------------VNLKSLDLSSN 259 (409)
Q Consensus 215 n~l~~~~~-~~~--~~-L~~L~l~~n~l~~~~~~l~~l-------------------------------~~L~~L~l~~n 259 (409)
|.+. .+| .+. ++ |+.|++++|.++..+..+... ++|+.|++++|
T Consensus 605 N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N 683 (876)
T 4ecn_A 605 NQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN 683 (876)
T ss_dssp SCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS
T ss_pred Cccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCC
Confidence 7777 444 222 44 666666666655322233222 35556666666
Q ss_pred cCCCCCchhh-cCCCCCcEEEccCCcCCccCCCCCCC-------CCCCCEEEccCCcCCCcchhhhc--CCCCCCEEEcc
Q 038636 260 RFTGAISHEV-LTLPQVVSIDVSVNRLTAIEMTTLSG-------DTHLQELDVQGNLLRGHLPINLV--SLRNLTSINLA 329 (409)
Q Consensus 260 ~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~-------~~~L~~L~Ls~n~l~~~~p~~l~--~l~~L~~L~L~ 329 (409)
.++ .+|..+ ..+++|+.|+|++|+++.++...+.. +++|+.|+|++|+++ .+|..+. .+++|+.|+|+
T Consensus 684 ~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls 761 (876)
T 4ecn_A 684 EIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVS 761 (876)
T ss_dssp CCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECC
T ss_pred cCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeC
Confidence 665 334333 46788888888888888644333332 238999999999988 7888887 88999999999
Q ss_pred CCeecccCchhHhhhccCCccEEEccC------CcCcccCchhhhcCCCCCeEEcCCCcc-CCCchhh
Q 038636 330 RNQLSGHIPKVYGAKLGSSWRSLFLDH------NFLWGNLPPEFSSSITRIRGSLAKNCL-SCPETIR 390 (409)
Q Consensus 330 ~N~l~~~~p~~~~~~~~~~L~~L~L~~------N~l~~~~p~~~~~~~~L~~L~l~~N~l-~~p~~l~ 390 (409)
+|++++ +|..+..+.. |+.|+|++ |.+.+.+|..+.++++|+.|++++|++ .+|..+.
T Consensus 762 ~N~L~~-lp~~l~~L~~--L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~ 826 (876)
T 4ecn_A 762 YNCFSS-FPTQPLNSSQ--LKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLT 826 (876)
T ss_dssp SSCCSS-CCCGGGGCTT--CCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC
T ss_pred CCCCCc-cchhhhcCCC--CCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCCccCHhhc
Confidence 999987 7888887765 99999876 778888999999999999999999988 7777653
No 13
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=8.2e-36 Score=301.42 Aligned_cols=294 Identities=23% Similarity=0.250 Sum_probs=198.9
Q ss_pred CCcEEEEEccCCCCCCCCccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEe
Q 038636 85 TSRITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLD 164 (409)
Q Consensus 85 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~ 164 (409)
..++++|++++|.+++..+..|.++++|++|++++|.+++..|..|+++++|++|++++|.++ .+|.. .+++|++|+
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~ 127 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLD 127 (562)
T ss_dssp CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEE
T ss_pred CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEE
Confidence 467899999999999888888999999999999999999888888999999999999999998 77776 789999999
Q ss_pred ccCCcCCC-CCchhhcCCCCCCeEEeecCcCCCCCCCCCCCCCc--CEEeCCCCCC--CCCCCCC---------------
Q 038636 165 LSHNSLSG-IIPAQLSGLRSLTALRLSHNAFSGKIPSLTGAWQL--HTLDLDSNQL--YGNLPKF--------------- 224 (409)
Q Consensus 165 l~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L--~~L~l~~n~l--~~~~~~~--------------- 224 (409)
+++|.+++ .+|..++++++|++|++++|.+.+. .+..+++| ++|++++|.+ ++..|..
T Consensus 128 Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 205 (562)
T 3a79_B 128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHP 205 (562)
T ss_dssp CCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECS
T ss_pred CCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecC
Confidence 99999986 3567899999999999999988642 23333344 6666666655 3322200
Q ss_pred ---------------------------------------------------------------------CCCCcEEEeec
Q 038636 225 ---------------------------------------------------------------------PTSLRTLSLSH 235 (409)
Q Consensus 225 ---------------------------------------------------------------------~~~L~~L~l~~ 235 (409)
.++|++|++++
T Consensus 206 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~ 285 (562)
T 3a79_B 206 NSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYN 285 (562)
T ss_dssp SSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEE
T ss_pred ccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEec
Confidence 01455555555
Q ss_pred ccCCCCCc-cc-----------------------------------------------------CCCCCCCEEEeeCCcC
Q 038636 236 NLLSGHLS-SL-----------------------------------------------------RNLVNLKSLDLSSNRF 261 (409)
Q Consensus 236 n~l~~~~~-~l-----------------------------------------------------~~l~~L~~L~l~~n~l 261 (409)
|.++|.+| .+ ..+++|++|++++|.+
T Consensus 286 n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l 365 (562)
T 3a79_B 286 LTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVF 365 (562)
T ss_dssp EEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCC
T ss_pred cEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCcc
Confidence 55554333 22 4566777777777777
Q ss_pred CCCCchhhcCCCCCcEEEccCCcCCccC--CCCCCCCCCCCEEEccCCcCCCcchh-hhcCCCCCCEEEccCCeecccCc
Q 038636 262 TGAISHEVLTLPQVVSIDVSVNRLTAIE--MTTLSGDTHLQELDVQGNLLRGHLPI-NLVSLRNLTSINLARNQLSGHIP 338 (409)
Q Consensus 262 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~~~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~L~~N~l~~~~p 338 (409)
++.+|..+..+++|++|++++|++++.. +..+..+++|++|++++|.+++.+|. .+..+++|++|++++|++++.+|
T Consensus 366 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 445 (562)
T 3a79_B 366 TDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF 445 (562)
T ss_dssp CTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGG
T ss_pred ccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchh
Confidence 7666667777777777777777776533 23456666777777777776654443 25555666666666666655554
Q ss_pred hhHhhhccCCccEEEccCCcCcccCchhhhcCCCCCeEEcCCCcc-CCCch
Q 038636 339 KVYGAKLGSSWRSLFLDHNFLWGNLPPEFSSSITRIRGSLAKNCL-SCPET 388 (409)
Q Consensus 339 ~~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~l~~N~l-~~p~~ 388 (409)
..+. ++|++|++++|+++ .+|..+..+++|++|++++|++ .+|..
T Consensus 446 ~~l~----~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~ 491 (562)
T 3a79_B 446 RCLP----PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDG 491 (562)
T ss_dssp SSCC----TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTT
T ss_pred hhhc----CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHH
Confidence 4332 12555555555555 4555555555555555555555 45544
No 14
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=4.4e-36 Score=289.76 Aligned_cols=289 Identities=22% Similarity=0.237 Sum_probs=233.3
Q ss_pred CcEEEEEccCCCCCCCCccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEec
Q 038636 86 SRITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDL 165 (409)
Q Consensus 86 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l 165 (409)
.+++.++++++.++...+..+.++++|++|++++|.+++..+..|..+++|++|++++|.+.+..|..++++++|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 56788888888877765555788899999999999888767778888999999999999988777777888999999999
Q ss_pred cCCcCCCCCchhhcCCCCCCeEEeecCcCCCCCCC-CCCCCCcCEEeCCCCCCCCCCCCCCCC-----------------
Q 038636 166 SHNSLSGIIPAQLSGLRSLTALRLSHNAFSGKIPS-LTGAWQLHTLDLDSNQLYGNLPKFPTS----------------- 227 (409)
Q Consensus 166 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~----------------- 227 (409)
++|.++...+..+.++++|++|++++|.+.+..+. +..+++|++|++++|.+++......++
T Consensus 125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~ 204 (390)
T 3o6n_A 125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIP 204 (390)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECC
T ss_pred CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccCCC
Confidence 99988854444468889999999999988876665 888889999999998887653333344
Q ss_pred --CcEEEeecccCCCCCcccCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEcc
Q 038636 228 --LRTLSLSHNLLSGHLSSLRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQ 305 (409)
Q Consensus 228 --L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls 305 (409)
|++|++++|.+..... ...++|+.|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 205 ~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 280 (390)
T 3o6n_A 205 IAVEELDASHNSINVVRG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS 280 (390)
T ss_dssp SSCSEEECCSSCCCEEEC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECC
T ss_pred CcceEEECCCCeeeeccc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECC
Confidence 4555555555544322 2246899999999998864 578889999999999999998777788899999999999
Q ss_pred CCcCCCcchhhhcCCCCCCEEEccCCeecccCchhHhhhccCCccEEEccCCcCcccCchhhhcCCCCCeEEcCCCccCC
Q 038636 306 GNLLRGHLPINLVSLRNLTSINLARNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWGNLPPEFSSSITRIRGSLAKNCLSC 385 (409)
Q Consensus 306 ~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~l~~N~l~~ 385 (409)
+|+++ .+|..+..+++|++|++++|+++ .+|..+..+.. |++|++++|.+++ +| +..+++|+.|++++|++.+
T Consensus 281 ~n~l~-~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~--L~~L~L~~N~i~~-~~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 281 NNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDR--LENLYLDHNSIVT-LK--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp SSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTT--CSEEECCSSCCCC-CC--CCTTCCCSEEECCSSCEEH
T ss_pred CCcCc-ccCcccCCCCCCCEEECCCCcce-ecCccccccCc--CCEEECCCCccce-eC--chhhccCCEEEcCCCCccc
Confidence 99998 46777788999999999999998 67777887766 9999999999984 44 6678899999999999933
No 15
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=6.2e-36 Score=304.28 Aligned_cols=321 Identities=21% Similarity=0.206 Sum_probs=247.4
Q ss_pred CCCCCCCCCCCCCCCCCCceeeeecCCCC------------CCCCCcEEEEEccCCCCCCCCccccCCCCCCcEEEccCC
Q 038636 53 SFLDSWDFKLDPCESSGGQFLGILCSIPS------------DNSTSRITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRN 120 (409)
Q Consensus 53 ~~l~~w~~~~~~C~~~~~~w~gv~c~~~~------------~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n 120 (409)
..+.+|....+||. ....|.++.|+... .-...+++.+++.++.+....+..+.++++|++|++++|
T Consensus 7 ~~l~~~~~~~~C~~-~~~~~~c~~~~~~i~~~~~~~~~~~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n 85 (597)
T 3oja_B 7 YNVKPRQPEYKCID-SNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL 85 (597)
T ss_dssp ----CCCSEECCCC-C--CCSEEECSCEECSSCCCCEESCSSGGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTS
T ss_pred ccccCCCCCCcCcc-cCcCceeEecCceecccccccccCcccccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCC
Confidence 34678876555553 23345555554210 001245678888888887766666788899999999999
Q ss_pred cCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEeccCCcCCCCCchhhcCCCCCCeEEeecCcCCCCCCC
Q 038636 121 NFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTALRLSHNAFSGKIPS 200 (409)
Q Consensus 121 ~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~ 200 (409)
.+++..|..|+.+++|++|+|++|.+++..|..|+++++|++|++++|.+++..+..|+++++|++|++++|.+++..|.
T Consensus 86 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 165 (597)
T 3oja_B 86 QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD 165 (597)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTT
T ss_pred CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChh
Confidence 98877777888999999999999999877777788899999999999998865555578889999999999998877775
Q ss_pred -CCCCCCcCEEeCCCCCCCCCCCCCCCCCcEEEeecc-------------------cCCCCCcccCCCCCCCEEEeeCCc
Q 038636 201 -LTGAWQLHTLDLDSNQLYGNLPKFPTSLRTLSLSHN-------------------LLSGHLSSLRNLVNLKSLDLSSNR 260 (409)
Q Consensus 201 -~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n-------------------~l~~~~~~l~~l~~L~~L~l~~n~ 260 (409)
+..+++|++|++++|.+++..+...++|+.|++++| .+....+. ..++|+.|++++|.
T Consensus 166 ~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~--~~~~L~~L~L~~n~ 243 (597)
T 3oja_B 166 TFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP--VNVELTILKLQHNN 243 (597)
T ss_dssp TTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECS--CCSCCCEEECCSSC
T ss_pred hhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccc--cCCCCCEEECCCCC
Confidence 888889999999999888754444455555555544 44433222 23578899999999
Q ss_pred CCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchhhhcCCCCCCEEEccCCeecccCchh
Q 038636 261 FTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLTSINLARNQLSGHIPKV 340 (409)
Q Consensus 261 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~ 340 (409)
+++. ..+..+++|+.|++++|.+++..+..+..+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..
T Consensus 244 l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~ 319 (597)
T 3oja_B 244 LTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERN 319 (597)
T ss_dssp CCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGG
T ss_pred CCCC--hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcc
Confidence 8863 678899999999999999999777888999999999999999995 6777788999999999999998 67888
Q ss_pred HhhhccCCccEEEccCCcCcccCchhhhcCCCCCeEEcCCCccCC
Q 038636 341 YGAKLGSSWRSLFLDHNFLWGNLPPEFSSSITRIRGSLAKNCLSC 385 (409)
Q Consensus 341 ~~~~~~~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~l~~N~l~~ 385 (409)
+..++. |++|+|++|.+++ +| +..+++|+.|++++|++.|
T Consensus 320 ~~~l~~--L~~L~L~~N~l~~-~~--~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 320 QPQFDR--LENLYLDHNSIVT-LK--LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp HHHHTT--CSEEECCSSCCCC-CC--CCTTCCCSEEECCSSCEEH
T ss_pred cccCCC--CCEEECCCCCCCC-cC--hhhcCCCCEEEeeCCCCCC
Confidence 888866 9999999999985 44 6677899999999999833
No 16
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.8e-36 Score=295.91 Aligned_cols=284 Identities=21% Similarity=0.215 Sum_probs=248.5
Q ss_pred CCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccC-chhccCCCCCCEEeccCCcCCCCCchhhcCCCCCCeEE
Q 038636 110 TELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNI-PVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTALR 188 (409)
Q Consensus 110 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~-p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 188 (409)
++|++|++++|.+++..|..|+++++|++|++++|.+.+.+ |..|.++++|++|++++|.+++..|..++++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 78999999999999888999999999999999999998666 46799999999999999999988899999999999999
Q ss_pred eecCcCCCCCCC---CCCCCCcCEEeCCCCCCCCCCCC--C--CCCCcEEEeecccCCCCCc-ccCC-------------
Q 038636 189 LSHNAFSGKIPS---LTGAWQLHTLDLDSNQLYGNLPK--F--PTSLRTLSLSHNLLSGHLS-SLRN------------- 247 (409)
Q Consensus 189 L~~n~l~~~~~~---~~~l~~L~~L~l~~n~l~~~~~~--~--~~~L~~L~l~~n~l~~~~~-~l~~------------- 247 (409)
+++|.+++.++. +..+++|++|++++|.+.+..|. + .++|++|++++|.+++..+ .+..
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 999999875443 88999999999999999988773 2 3899999999999988766 4433
Q ss_pred ---------------------CCCCCEEEeeCCcCCCCCchhhcC-----------------------------------
Q 038636 248 ---------------------LVNLKSLDLSSNRFTGAISHEVLT----------------------------------- 271 (409)
Q Consensus 248 ---------------------l~~L~~L~l~~n~l~~~~~~~~~~----------------------------------- 271 (409)
+++|++|++++|++++..|..+..
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence 367889999999887665554422
Q ss_pred ----CCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchhhhcCCCCCCEEEccCCeecccCchhHhhhccC
Q 038636 272 ----LPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLTSINLARNQLSGHIPKVYGAKLGS 347 (409)
Q Consensus 272 ----l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~ 347 (409)
.++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+.++++|++|++++|++++..|..+..+..
T Consensus 270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~- 348 (455)
T 3v47_A 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDK- 348 (455)
T ss_dssp GGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTT-
T ss_pred ccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCccc-
Confidence 258999999999999887888999999999999999999888999999999999999999999888999888866
Q ss_pred CccEEEccCCcCcccCchhhhcCCCCCeEEcCCCcc-CCCch-hhhccCC
Q 038636 348 SWRSLFLDHNFLWGNLPPEFSSSITRIRGSLAKNCL-SCPET-IRLCHGG 395 (409)
Q Consensus 348 ~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~l~~N~l-~~p~~-l~~~~~~ 395 (409)
|++|++++|++++..|..+..+++|++|++++|++ .+|.. +..+..+
T Consensus 349 -L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 397 (455)
T 3v47_A 349 -LEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSL 397 (455)
T ss_dssp -CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred -CCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcc
Confidence 99999999999988899999999999999999999 77654 3444443
No 17
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.6e-35 Score=301.90 Aligned_cols=308 Identities=20% Similarity=0.187 Sum_probs=238.9
Q ss_pred CCcEEEEEccCCCCCCCCccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEe
Q 038636 85 TSRITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLD 164 (409)
Q Consensus 85 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~ 164 (409)
...++.|++++|.+++..|..|+++++|++|++++|.+++..|..|+++++|++|++++|.+.+..|..|+++++|++|+
T Consensus 32 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence 45788999999999888888899999999999999998887888899999999999999999888888888999999999
Q ss_pred ccCCcCCCCCchhhcCCCCCCeEEeecCcCCC-CCCCCCCCCCcCEEeCCCCCCCCCCCC---CCC--------------
Q 038636 165 LSHNSLSGIIPAQLSGLRSLTALRLSHNAFSG-KIPSLTGAWQLHTLDLDSNQLYGNLPK---FPT-------------- 226 (409)
Q Consensus 165 l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~---~~~-------------- 226 (409)
+++|.+++..|..++++++|++|++++|.+.+ .+|.+..+++|++|++++|.+++..+. ..+
T Consensus 112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l 191 (606)
T 3t6q_A 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191 (606)
T ss_dssp CTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred ccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCcc
Confidence 99998887667778888888888888888886 335555677888888887776654331 112
Q ss_pred ---------------------------------------------------------------CCcEEEeecccCCCCCc
Q 038636 227 ---------------------------------------------------------------SLRTLSLSHNLLSGHLS 243 (409)
Q Consensus 227 ---------------------------------------------------------------~L~~L~l~~n~l~~~~~ 243 (409)
+|+.|++++|.+++..+
T Consensus 192 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~ 271 (606)
T 3t6q_A 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS 271 (606)
T ss_dssp CEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCT
T ss_pred CccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCH
Confidence 34455555555555555
Q ss_pred -ccCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchhh-hcCCC
Q 038636 244 -SLRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPIN-LVSLR 321 (409)
Q Consensus 244 -~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~-l~~l~ 321 (409)
.+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+.+|.. +..++
T Consensus 272 ~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~ 350 (606)
T 3t6q_A 272 NTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350 (606)
T ss_dssp TTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCT
T ss_pred HHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccC
Confidence 4777788888888888877 66777778888888888888888766667777888888888888887666553 77888
Q ss_pred CCCEEEccCCeecccC--chhHhhhccCCccEEEccCCcCcccCchhhhcCCCCCeEEcCCCcc--CCCc-hhhhccCC
Q 038636 322 NLTSINLARNQLSGHI--PKVYGAKLGSSWRSLFLDHNFLWGNLPPEFSSSITRIRGSLAKNCL--SCPE-TIRLCHGG 395 (409)
Q Consensus 322 ~L~~L~L~~N~l~~~~--p~~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~l~~N~l--~~p~-~l~~~~~~ 395 (409)
+|++|++++|++++.. |..+..+.. |++|++++|.+++..|..+..+++|+.|++++|.+ ..|. .+..+..+
T Consensus 351 ~L~~L~l~~n~l~~~~~~~~~~~~l~~--L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 427 (606)
T 3t6q_A 351 NLRELDLSHDDIETSDCCNLQLRNLSH--LQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL 427 (606)
T ss_dssp TCCEEECCSSCCCEEEESTTTTTTCTT--CCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTC
T ss_pred cCCEEECCCCccccccCcchhcccCCC--CCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccC
Confidence 8888888888887665 666777755 88888888888888888888888899999998888 2332 35544443
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.9e-35 Score=295.86 Aligned_cols=296 Identities=22% Similarity=0.209 Sum_probs=214.8
Q ss_pred EEEEccCCCCCCCCccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEeccCC
Q 038636 89 TAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHN 168 (409)
Q Consensus 89 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n 168 (409)
+.++++++++++ +|..+. ++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|+++++|++|++++|
T Consensus 3 ~~l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIH-VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSS-CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCccc-cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 468999999995 676665 89999999999999888889999999999999999999888999999999999999999
Q ss_pred cCCCCCchhhcCCCCCCeEEeecCcCCC-CCCC-CCCCCCcCEEeCCCCCCCCCCCCCCC--------------------
Q 038636 169 SLSGIIPAQLSGLRSLTALRLSHNAFSG-KIPS-LTGAWQLHTLDLDSNQLYGNLPKFPT-------------------- 226 (409)
Q Consensus 169 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~-------------------- 226 (409)
.++ .+|.. .+++|++|++++|.+++ .+|. ++.+++|++|++++|.+++......+
T Consensus 80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~ 156 (520)
T 2z7x_B 80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKED 156 (520)
T ss_dssp CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCC
T ss_pred cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEeecccccccccc
Confidence 998 57766 89999999999999987 4554 88899999999988877532111111
Q ss_pred --------------------------------------------------------------------------------
Q 038636 227 -------------------------------------------------------------------------------- 226 (409)
Q Consensus 227 -------------------------------------------------------------------------------- 226 (409)
T Consensus 157 ~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~ 236 (520)
T 2z7x_B 157 PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNS 236 (520)
T ss_dssp TTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHH
T ss_pred cccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHH
Confidence
Q ss_pred -----------CCcEEEeecccCCCCCc-cc-------------------------------------------------
Q 038636 227 -----------SLRTLSLSHNLLSGHLS-SL------------------------------------------------- 245 (409)
Q Consensus 227 -----------~L~~L~l~~n~l~~~~~-~l------------------------------------------------- 245 (409)
+|++|++++|.+++.+| .+
T Consensus 237 ~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~ 316 (520)
T 2z7x_B 237 FIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVH 316 (520)
T ss_dssp HHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCC
T ss_pred HHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcccc
Confidence 46666666666665444 33
Q ss_pred ----CCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccC--CCCCCCCCCCCEEEccCCcCCCcchhh-hc
Q 038636 246 ----RNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIE--MTTLSGDTHLQELDVQGNLLRGHLPIN-LV 318 (409)
Q Consensus 246 ----~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~~~~L~~L~Ls~n~l~~~~p~~-l~ 318 (409)
..+++|++|++++|++++.+|..+..+++|++|++++|++++.. +..+..+++|++|++++|.+++.+|.. +.
T Consensus 317 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~ 396 (520)
T 2z7x_B 317 MLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS 396 (520)
T ss_dssp CCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCC
T ss_pred ccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhc
Confidence 34455556666666666555555566666666666666665421 123455566666666666666545543 55
Q ss_pred CCCCCCEEEccCCeecccCchhHhhhccCCccEEEccCCcCcccCchhhhcCCCCCeEEcCCCcc-CCCch-hhhccCC
Q 038636 319 SLRNLTSINLARNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWGNLPPEFSSSITRIRGSLAKNCL-SCPET-IRLCHGG 395 (409)
Q Consensus 319 ~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~l~~N~l-~~p~~-l~~~~~~ 395 (409)
.+++|+.|++++|++++.+|..+. ++|++|++++|+++ .+|..+..+++|++|++++|++ .+|.. +..+..+
T Consensus 397 ~l~~L~~L~Ls~N~l~~~~~~~l~----~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L 470 (520)
T 2z7x_B 397 WTKSLLSLNMSSNILTDTIFRCLP----PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSL 470 (520)
T ss_dssp CCTTCCEEECCSSCCCGGGGGSCC----TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cCccCCEEECcCCCCCcchhhhhc----ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcc
Confidence 556666666666666655555442 34888888888887 7888788888888888888888 77776 5554443
No 19
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.9e-35 Score=312.03 Aligned_cols=297 Identities=21% Similarity=0.176 Sum_probs=237.4
Q ss_pred CCcEEEEEccCCCCCCCCccccCCCCCCcEEEccCCcCCCCC-cccccCCCCCcEEeccCccCCccCchhccCCCCCCEE
Q 038636 85 TSRITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPI-PDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTL 163 (409)
Q Consensus 85 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L 163 (409)
+.++++|+|++|.+++..+..|.++++|++|++++|...+.+ |..|+++++|++|+|++|.+.+..|..|+++++|++|
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 578999999999999988999999999999999999766666 7889999999999999999998889999999999999
Q ss_pred eccCCcCCCCCchh--hcCCCCCCeEEeecCcCCCCCCC--CCCCCCcCEEeCCCCCCCCCCCC-CC----CCCcEEEee
Q 038636 164 DLSHNSLSGIIPAQ--LSGLRSLTALRLSHNAFSGKIPS--LTGAWQLHTLDLDSNQLYGNLPK-FP----TSLRTLSLS 234 (409)
Q Consensus 164 ~l~~n~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~-~~----~~L~~L~l~ 234 (409)
++++|.+++.+|.. +.++++|++|++++|.+++..+. ++++++|++|++++|.+++..+. +. ++|+.|+++
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~ 182 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence 99999999877765 89999999999999999877653 89999999999999999887662 21 678888888
Q ss_pred cccCCCCCc-ccCCCCC------CCEEEeeCCcCCCCCchhhcC------------------------------------
Q 038636 235 HNLLSGHLS-SLRNLVN------LKSLDLSSNRFTGAISHEVLT------------------------------------ 271 (409)
Q Consensus 235 ~n~l~~~~~-~l~~l~~------L~~L~l~~n~l~~~~~~~~~~------------------------------------ 271 (409)
+|.+.+..+ .++.+.+ |+.|++++|.+++..+..+..
T Consensus 183 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~ 262 (844)
T 3j0a_A 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262 (844)
T ss_dssp CSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTT
T ss_pred CCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhc
Confidence 888877665 5555444 778888877766554443321
Q ss_pred --CCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchhhhcCCCCCCEEEccCCeecccCchhHhhhccCCc
Q 038636 272 --LPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLTSINLARNQLSGHIPKVYGAKLGSSW 349 (409)
Q Consensus 272 --l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L 349 (409)
.++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..|..|..+++|++|+|++|++++..|..+..++. |
T Consensus 263 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~--L 340 (844)
T 3j0a_A 263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPK--V 340 (844)
T ss_dssp TTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTT--C
T ss_pred cccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCC--C
Confidence 256777777777777766667777777777777777777777777777777777777777777776777776655 7
Q ss_pred cEEEccCCcCcccCchhhhcCCCCCeEEcCCCcc
Q 038636 350 RSLFLDHNFLWGNLPPEFSSSITRIRGSLAKNCL 383 (409)
Q Consensus 350 ~~L~L~~N~l~~~~p~~~~~~~~L~~L~l~~N~l 383 (409)
++|++++|.+++..+..+..+++|+.|++++|.+
T Consensus 341 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 374 (844)
T 3j0a_A 341 AYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL 374 (844)
T ss_dssp CEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCS
T ss_pred CEEECCCCCCCccChhhhcCCCCCCEEECCCCCC
Confidence 7777777777765566677777777777777776
No 20
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.1e-35 Score=297.45 Aligned_cols=135 Identities=19% Similarity=0.192 Sum_probs=104.9
Q ss_pred CCcEEEEEccCCCCCCCCccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEe
Q 038636 85 TSRITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLD 164 (409)
Q Consensus 85 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~ 164 (409)
..++++|++++|.+++..|..|.++++|++|++++|.+++..|..|+++++|++|++++|.+++..|..|+++++|++|+
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 35788899999988888788888889999999999988877778888888999999999988877767788888888888
Q ss_pred ccCCcCCC-CCchhhcCCCCCCeEEeecCcCCCCCCC--CCCCCCcCEEeCCCCCCCC
Q 038636 165 LSHNSLSG-IIPAQLSGLRSLTALRLSHNAFSGKIPS--LTGAWQLHTLDLDSNQLYG 219 (409)
Q Consensus 165 l~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~~--~~~l~~L~~L~l~~n~l~~ 219 (409)
+++|.+++ ..|..++++++|++|++++|.+.+.+|. +..+++|++|++++|.+++
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 162 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 162 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence 88888876 3566777888888888888774444442 5556666666665555554
No 21
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=3.3e-35 Score=299.60 Aligned_cols=92 Identities=23% Similarity=0.288 Sum_probs=74.0
Q ss_pred CCcEEEEEccCCCCCCCCccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCc-cCchhccCCCCCCEE
Q 038636 85 TSRITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTG-NIPVGITRLKKLQTL 163 (409)
Q Consensus 85 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~-~~p~~l~~l~~L~~L 163 (409)
..+++.|++++|.+++..|..|+++++|++|++++|.+++..+..++++++|++|++++|.+.+ .+|..++++++|++|
T Consensus 79 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L 158 (606)
T 3vq2_A 79 LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHV 158 (606)
T ss_dssp CTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEE
T ss_pred hhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEE
Confidence 5678888888888888778888888888888888888887666778888888888888888875 568888888888888
Q ss_pred eccCCcCCCCCch
Q 038636 164 DLSHNSLSGIIPA 176 (409)
Q Consensus 164 ~l~~n~l~~~~p~ 176 (409)
++++|.+++..|.
T Consensus 159 ~Ls~n~l~~~~~~ 171 (606)
T 3vq2_A 159 DLSYNYIQTITVN 171 (606)
T ss_dssp ECCSSCCCEECTT
T ss_pred EccCCcceecChh
Confidence 8888877654443
No 22
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1e-34 Score=287.53 Aligned_cols=300 Identities=21% Similarity=0.178 Sum_probs=264.7
Q ss_pred EEEEccCCCCCCCCccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEeccCC
Q 038636 89 TAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHN 168 (409)
Q Consensus 89 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n 168 (409)
+.++.++.+++. +|..+. +++++|+|++|.+++..|..|.++++|++|+|++|.+++..|..|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~~-ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFVA-VPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCSS-CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCc-CCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 357777777775 455443 68999999999999888889999999999999999999888999999999999999999
Q ss_pred cCCCCCchhhcCCCCCCeEEeecCcCCCCCCC-CCCCCCcCEEeCCCCCCCCCCCC-C--CCCCcEEEeecccCCCCCc-
Q 038636 169 SLSGIIPAQLSGLRSLTALRLSHNAFSGKIPS-LTGAWQLHTLDLDSNQLYGNLPK-F--PTSLRTLSLSHNLLSGHLS- 243 (409)
Q Consensus 169 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~-~--~~~L~~L~l~~n~l~~~~~- 243 (409)
.+++..+..|.++++|++|++++|.+.+..+. +..+++|++|++++|.+.+..+. + .++|++|++++|.+++..+
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 170 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHH
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChh
Confidence 99976666789999999999999999987776 89999999999999999887662 2 3899999999999998877
Q ss_pred ccCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchhhhcCCCCC
Q 038636 244 SLRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNL 323 (409)
Q Consensus 244 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L 323 (409)
.+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+.......+|++|++++|.+++..+..+..+++|
T Consensus 171 ~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 250 (477)
T 2id5_A 171 ALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL 250 (477)
T ss_dssp HHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTC
T ss_pred HhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcccc
Confidence 79999999999999999998888899999999999999998877566655566799999999999996655789999999
Q ss_pred CEEEccCCeecccCchhHhhhccCCccEEEccCCcCcccCchhhhcCCCCCeEEcCCCcc-CCCch-hhhcc
Q 038636 324 TSINLARNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWGNLPPEFSSSITRIRGSLAKNCL-SCPET-IRLCH 393 (409)
Q Consensus 324 ~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~l~~N~l-~~p~~-l~~~~ 393 (409)
+.|+|++|++++..+..+..+.. |++|+|++|++++..|..+..+++|+.|++++|.+ .+|.. +..+.
T Consensus 251 ~~L~Ls~n~l~~~~~~~~~~l~~--L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 320 (477)
T 2id5_A 251 RFLNLSYNPISTIEGSMLHELLR--LQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVG 320 (477)
T ss_dssp CEEECCSSCCCEECTTSCTTCTT--CCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGG
T ss_pred CeeECCCCcCCccChhhcccccc--CCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCc
Confidence 99999999999888888888866 99999999999999999999999999999999999 67654 34443
No 23
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=8.4e-35 Score=294.27 Aligned_cols=113 Identities=22% Similarity=0.269 Sum_probs=76.4
Q ss_pred CCcEEEEEccCCCCCCCCccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEe
Q 038636 85 TSRITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLD 164 (409)
Q Consensus 85 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~ 164 (409)
..+++.|++++|.+++..+..|+++++|++|++++|.+++..|..|+++++|++|++++|.+++..+..++++++|++|+
T Consensus 51 l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 130 (570)
T 2z63_A 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130 (570)
T ss_dssp CSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEE
T ss_pred CCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEe
Confidence 45666777777766666566667777777777777776655556677777777777777776643333567777777777
Q ss_pred ccCCcCCC-CCchhhcCCCCCCeEEeecCcCCCC
Q 038636 165 LSHNSLSG-IIPAQLSGLRSLTALRLSHNAFSGK 197 (409)
Q Consensus 165 l~~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~ 197 (409)
+++|.+++ .+|..++++++|++|++++|.+++.
T Consensus 131 L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~ 164 (570)
T 2z63_A 131 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (570)
T ss_dssp CCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEE
T ss_pred cCCCccceecChhhhcccCCCCEEeCcCCcccee
Confidence 77777765 3577777777777777777765543
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.6e-34 Score=292.05 Aligned_cols=297 Identities=20% Similarity=0.140 Sum_probs=246.5
Q ss_pred EEEEccCCCCCCCCccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEeccCC
Q 038636 89 TAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHN 168 (409)
Q Consensus 89 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n 168 (409)
+.++++++++++ +|..+. ++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|+++++|++|++++|
T Consensus 34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 789999999997 566554 89999999999999888889999999999999999999888899999999999999999
Q ss_pred cCCCCCchhhcCCCCCCeEEeecCcCCCC-CCC-CCCCCCcCEEeCCCCCCCCCCCCCCCCC--cEEEeecccC--CCCC
Q 038636 169 SLSGIIPAQLSGLRSLTALRLSHNAFSGK-IPS-LTGAWQLHTLDLDSNQLYGNLPKFPTSL--RTLSLSHNLL--SGHL 242 (409)
Q Consensus 169 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~L--~~L~l~~n~l--~~~~ 242 (409)
.++ .+|.. .+++|++|++++|.+++. +|. +.++++|++|++++|.+.+......++| ++|++++|.+ ++..
T Consensus 111 ~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~ 187 (562)
T 3a79_B 111 RLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGE 187 (562)
T ss_dssp CCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSS
T ss_pred cCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccccccccC
Confidence 998 56766 899999999999999863 344 9999999999999999987443333566 9999999988 5554
Q ss_pred c-ccCCCC------------------------------------------------------------------------
Q 038636 243 S-SLRNLV------------------------------------------------------------------------ 249 (409)
Q Consensus 243 ~-~l~~l~------------------------------------------------------------------------ 249 (409)
+ .+..+.
T Consensus 188 ~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~ 267 (562)
T 3a79_B 188 TESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSV 267 (562)
T ss_dssp CCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHH
T ss_pred cccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHH
Confidence 4 333322
Q ss_pred ---------CCCEEEeeCCcCCCCCchhh---------------------------------------------------
Q 038636 250 ---------NLKSLDLSSNRFTGAISHEV--------------------------------------------------- 269 (409)
Q Consensus 250 ---------~L~~L~l~~n~l~~~~~~~~--------------------------------------------------- 269 (409)
+|++|++++|.++|.+|..+
T Consensus 268 ~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~ 347 (562)
T 3a79_B 268 KLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV 347 (562)
T ss_dssp HHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC
T ss_pred HHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc
Confidence 67788888888887777654
Q ss_pred --cCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCC--cchhhhcCCCCCCEEEccCCeecccCchh-Hhhh
Q 038636 270 --LTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRG--HLPINLVSLRNLTSINLARNQLSGHIPKV-YGAK 344 (409)
Q Consensus 270 --~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~L~~N~l~~~~p~~-~~~~ 344 (409)
..+++|++|++++|++++..+..+..+++|++|++++|++++ .+|..+..+++|+.|++++|++++.+|.. +..+
T Consensus 348 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l 427 (562)
T 3a79_B 348 CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWA 427 (562)
T ss_dssp CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCC
T ss_pred CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCc
Confidence 567889999999999988777788889999999999999986 44667888999999999999998866654 5555
Q ss_pred ccCCccEEEccCCcCcccCchhhhcCCCCCeEEcCCCcc-CCCchhhhccCC
Q 038636 345 LGSSWRSLFLDHNFLWGNLPPEFSSSITRIRGSLAKNCL-SCPETIRLCHGG 395 (409)
Q Consensus 345 ~~~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~l~~N~l-~~p~~l~~~~~~ 395 (409)
.. |++|++++|++++.+|..+. ++|+.|++++|.+ .+|..+..+..+
T Consensus 428 ~~--L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L 475 (562)
T 3a79_B 428 ES--ILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQAL 475 (562)
T ss_dssp TT--CCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCC
T ss_pred cc--CCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCC
Confidence 44 99999999999887776654 6899999999999 899887755544
No 25
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.3e-34 Score=292.85 Aligned_cols=295 Identities=22% Similarity=0.243 Sum_probs=184.2
Q ss_pred CCcEEEEEccCCCCCCCCccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCc-cCchhccCCCCCCEE
Q 038636 85 TSRITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTG-NIPVGITRLKKLQTL 163 (409)
Q Consensus 85 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~-~~p~~l~~l~~L~~L 163 (409)
..+++.|++++|.+++..+..|+++++|++|++++|.+++..+..++++++|++|++++|.+.+ .+|..++++++|++|
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L 154 (570)
T 2z63_A 75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154 (570)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred chhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEE
Confidence 5688899999998888777888899999999999998886555568889999999999998886 478888889999999
Q ss_pred eccCCcCCCCCchhhcCC--------------------------------------------------------------
Q 038636 164 DLSHNSLSGIIPAQLSGL-------------------------------------------------------------- 181 (409)
Q Consensus 164 ~l~~n~l~~~~p~~l~~l-------------------------------------------------------------- 181 (409)
++++|.+++..|..++.+
T Consensus 155 ~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~ 234 (570)
T 2z63_A 155 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL 234 (570)
T ss_dssp ECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEE
T ss_pred eCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeecc
Confidence 998887765544433333
Q ss_pred -----------------------------------------------CCCCeEEeecCcCCCCCCC-CCCCCCcCEEeCC
Q 038636 182 -----------------------------------------------RSLTALRLSHNAFSGKIPS-LTGAWQLHTLDLD 213 (409)
Q Consensus 182 -----------------------------------------------~~L~~L~L~~n~l~~~~~~-~~~l~~L~~L~l~ 213 (409)
++|++|++++|.+.+ +|. +..+ +|++|+++
T Consensus 235 ~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~-~L~~L~l~ 312 (570)
T 2z63_A 235 GEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNF-GWQHLELV 312 (570)
T ss_dssp EECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCC-CCSEEEEE
T ss_pred ccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh-hhhhhccC-CccEEeec
Confidence 333344444433331 221 2221 22222222
Q ss_pred CCCCC---------------------CCCC-CCCCCCcEEEeecccCCCC--------------------------Cccc
Q 038636 214 SNQLY---------------------GNLP-KFPTSLRTLSLSHNLLSGH--------------------------LSSL 245 (409)
Q Consensus 214 ~n~l~---------------------~~~~-~~~~~L~~L~l~~n~l~~~--------------------------~~~l 245 (409)
+|.+. +..+ ...++|++|++++|.+++. .+.+
T Consensus 313 ~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 392 (570)
T 2z63_A 313 NCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF 392 (570)
T ss_dssp SCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEE
T ss_pred cCcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccc
Confidence 22222 1111 1124455555555554433 2234
Q ss_pred CCCCCCCEEEeeCCcCCCCCc-hhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCC-CcchhhhcCCCCC
Q 038636 246 RNLVNLKSLDLSSNRFTGAIS-HEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLR-GHLPINLVSLRNL 323 (409)
Q Consensus 246 ~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~p~~l~~l~~L 323 (409)
..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ +.+|..+..+++|
T Consensus 393 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L 472 (570)
T 2z63_A 393 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 472 (570)
T ss_dssp ETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTC
T ss_pred cccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCC
Confidence 445555555555555544433 34555666666666666666555555566666666666666665 4566666666677
Q ss_pred CEEEccCCeecccCchhHhhhccCCccEEEccCCcCcccCchhhhcCCCCCeEEcCCCcc
Q 038636 324 TSINLARNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWGNLPPEFSSSITRIRGSLAKNCL 383 (409)
Q Consensus 324 ~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~l~~N~l 383 (409)
++|++++|++++..|..+..++. |++|++++|++++..|..+.++++|+.|++++|++
T Consensus 473 ~~L~l~~n~l~~~~~~~~~~l~~--L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 530 (570)
T 2z63_A 473 TFLDLSQCQLEQLSPTAFNSLSS--LQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530 (570)
T ss_dssp CEEECTTSCCCEECTTTTTTCTT--CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CEEECCCCccccCChhhhhcccC--CCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcc
Confidence 77777777776666666666544 77777777777665556666677777777777776
No 26
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4e-34 Score=295.45 Aligned_cols=296 Identities=21% Similarity=0.235 Sum_probs=235.2
Q ss_pred CCcEEEEEccCCCCCCCCccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEe
Q 038636 85 TSRITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLD 164 (409)
Q Consensus 85 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~ 164 (409)
..++++|+++++.+++..+..|+++++|++|++++|.+++..|..++++++|++|++++|.+++..+..|+++++|++|+
T Consensus 24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 46899999999999998888899999999999999999988899999999999999999999954444799999999999
Q ss_pred ccCCcCCCCCchhhcCCCCCCeEEeecCcCCCCCCC-CCCCCCcCEEeCCCCCCCCCCCC---C--CCCCcEEEeecccC
Q 038636 165 LSHNSLSGIIPAQLSGLRSLTALRLSHNAFSGKIPS-LTGAWQLHTLDLDSNQLYGNLPK---F--PTSLRTLSLSHNLL 238 (409)
Q Consensus 165 l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~---~--~~~L~~L~l~~n~l 238 (409)
+++|.+++..|..++++++|++|++++|.+++..+. +..+++|++|++++|.+++..+. . .++|++|++++|.+
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence 999999987778899999999999999999987776 88899999999999999877662 1 26899999999988
Q ss_pred CCCCc-ccCCC---------------------------CCCCEEEeeCCcCCCCCchhhcCCCC--CcEEEccCCcCCcc
Q 038636 239 SGHLS-SLRNL---------------------------VNLKSLDLSSNRFTGAISHEVLTLPQ--VVSIDVSVNRLTAI 288 (409)
Q Consensus 239 ~~~~~-~l~~l---------------------------~~L~~L~l~~n~l~~~~~~~~~~l~~--L~~L~L~~n~l~~~ 288 (409)
++..+ .+..+ ++|+.|++++|.+++..|..+..++. |++|++++|++++.
T Consensus 184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~ 263 (680)
T 1ziw_A 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263 (680)
T ss_dssp CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE
T ss_pred cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCcc
Confidence 87665 44332 56777777778777777777776644 88888888888877
Q ss_pred CCCCCCCCCCCCEEEccCCcCCCcchhhhcCCCCCCEEEccCCeecc-----cCch----hHhhhccCCccEEEccCCcC
Q 038636 289 EMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLTSINLARNQLSG-----HIPK----VYGAKLGSSWRSLFLDHNFL 359 (409)
Q Consensus 289 ~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~-----~~p~----~~~~~~~~~L~~L~L~~N~l 359 (409)
.+..+..+++|++|++++|.+++..|..+.++++|+.|++++|...+ .+|. .+..+.. |++|++++|.+
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~--L~~L~l~~n~l 341 (680)
T 1ziw_A 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKC--LEHLNMEDNDI 341 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTT--CCEEECCSCCB
T ss_pred CcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCC--CCEEECCCCcc
Confidence 66777788888888888888887777777777777777777665443 2222 4444444 77777777777
Q ss_pred cccCchhhhcCCCCCeEEcCCCc
Q 038636 360 WGNLPPEFSSSITRIRGSLAKNC 382 (409)
Q Consensus 360 ~~~~p~~~~~~~~L~~L~l~~N~ 382 (409)
++..|..+..+++|++|++++|.
T Consensus 342 ~~~~~~~~~~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 342 PGIKSNMFTGLINLKYLSLSNSF 364 (680)
T ss_dssp CCCCTTTTTTCTTCCEEECTTCB
T ss_pred CCCChhHhccccCCcEEECCCCc
Confidence 76666666677777777766665
No 27
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.7e-33 Score=287.87 Aligned_cols=303 Identities=20% Similarity=0.180 Sum_probs=237.8
Q ss_pred CCcEEEEEccCCCCCCCCccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEe
Q 038636 85 TSRITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLD 164 (409)
Q Consensus 85 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~ 164 (409)
+..+++|+|++|.+++..+.+|.++++|++|+|++|.+++..|.+|.++++|++|+|++|++++..+..|.++++|++|+
T Consensus 51 p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 51 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 45799999999999998888999999999999999999977778899999999999999999966667799999999999
Q ss_pred ccCCcCCCCCchhhcCCCCCCeEEeecCcCCCC-CCC-CCCCCCcCEEeCCCCCCCCCCCCC------------------
Q 038636 165 LSHNSLSGIIPAQLSGLRSLTALRLSHNAFSGK-IPS-LTGAWQLHTLDLDSNQLYGNLPKF------------------ 224 (409)
Q Consensus 165 l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-~~~-~~~l~~L~~L~l~~n~l~~~~~~~------------------ 224 (409)
+++|.+++..+..|+++++|++|++++|.+++. +|. +..+++|++|++++|.+++..+..
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~ 210 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 210 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhccc
Confidence 999999987777899999999999999998753 444 778889999998888664321100
Q ss_pred --------------------------------------------------------------------------------
Q 038636 225 -------------------------------------------------------------------------------- 224 (409)
Q Consensus 225 -------------------------------------------------------------------------------- 224 (409)
T Consensus 211 n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~ 290 (635)
T 4g8a_A 211 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 290 (635)
T ss_dssp CCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEEC
T ss_pred CcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence
Q ss_pred ------------------------------------CCCCcEEEeecccCCCCCc-------------------------
Q 038636 225 ------------------------------------PTSLRTLSLSHNLLSGHLS------------------------- 243 (409)
Q Consensus 225 ------------------------------------~~~L~~L~l~~n~l~~~~~------------------------- 243 (409)
...++.|++.+|.+.+...
T Consensus 291 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l 370 (635)
T 4g8a_A 291 LDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDL 370 (635)
T ss_dssp CCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBC
T ss_pred hcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccc
Confidence 0012223333222211000
Q ss_pred ---------------------------------------------------------------------ccCCCCCCCEE
Q 038636 244 ---------------------------------------------------------------------SLRNLVNLKSL 254 (409)
Q Consensus 244 ---------------------------------------------------------------------~l~~l~~L~~L 254 (409)
.+..+++++.+
T Consensus 371 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l 450 (635)
T 4g8a_A 371 PSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 450 (635)
T ss_dssp TTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEE
T ss_pred cccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccc
Confidence 11223334444
Q ss_pred EeeCCcCCCCCchhhcCCCCCcEEEccCCcCC-ccCCCCCCCCCCCCEEEccCCcCCCcchhhhcCCCCCCEEEccCCee
Q 038636 255 DLSSNRFTGAISHEVLTLPQVVSIDVSVNRLT-AIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLTSINLARNQL 333 (409)
Q Consensus 255 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l 333 (409)
+++.|.+.+..+..+..+++|+.|++++|++. +..+..+..+++|++|+|++|++++..|..|.++++|++|+|++|++
T Consensus 451 ~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l 530 (635)
T 4g8a_A 451 DISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 530 (635)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred cccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcC
Confidence 44444444455566667788888888888644 34556788899999999999999988899999999999999999999
Q ss_pred cccCchhHhhhccCCccEEEccCCcCcccCchhhhcC-CCCCeEEcCCCccCCCchh
Q 038636 334 SGHIPKVYGAKLGSSWRSLFLDHNFLWGNLPPEFSSS-ITRIRGSLAKNCLSCPETI 389 (409)
Q Consensus 334 ~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~~-~~L~~L~l~~N~l~~p~~l 389 (409)
++..|..|..++. |++|+|++|++++..|..+.++ ++|+.|++++|+|.|-..+
T Consensus 531 ~~l~~~~~~~l~~--L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~ 585 (635)
T 4g8a_A 531 FSLDTFPYKCLNS--LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 585 (635)
T ss_dssp CBCCCGGGTTCTT--CCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred CCCChhHHhCCCC--CCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc
Confidence 9988888888866 9999999999999999999888 5799999999999655443
No 28
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.2e-33 Score=292.02 Aligned_cols=297 Identities=23% Similarity=0.229 Sum_probs=193.6
Q ss_pred EEEEEccCCCCCCCCccccCCCCCCcEEEccCCcCCCCCcccccC---------------------------------CC
Q 038636 88 ITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITD---------------------------------LR 134 (409)
Q Consensus 88 v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~---------------------------------l~ 134 (409)
++.|++++|.+++..+..++.+++|++|++++|.+++..|..+.+ ++
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~ 329 (680)
T 1ziw_A 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK 329 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCT
T ss_pred CCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCC
Confidence 556666666555555555555666666666665555444444444 44
Q ss_pred CCcEEeccCccCCccCchhccCCCCCCEEeccCC----------------------------cCCCCCchhhcCCCCCCe
Q 038636 135 KLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHN----------------------------SLSGIIPAQLSGLRSLTA 186 (409)
Q Consensus 135 ~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n----------------------------~l~~~~p~~l~~l~~L~~ 186 (409)
+|++|++++|.+.+..|..|.++++|++|++++| .+++..|..+..+++|++
T Consensus 330 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 409 (680)
T 1ziw_A 330 CLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEV 409 (680)
T ss_dssp TCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred CCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCE
Confidence 4444444455554444444444444444444333 233333344444445555
Q ss_pred EEeecCcCCCCCCC--CCCCCCcCEEeCCCCCCCCCCC---CCCCCCcEEEeecccCC--CCCc-ccCCCCCCCEEEeeC
Q 038636 187 LRLSHNAFSGKIPS--LTGAWQLHTLDLDSNQLYGNLP---KFPTSLRTLSLSHNLLS--GHLS-SLRNLVNLKSLDLSS 258 (409)
Q Consensus 187 L~L~~n~l~~~~~~--~~~l~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~--~~~~-~l~~l~~L~~L~l~~ 258 (409)
|++++|.+.+.+|. +..+++|++|++++|.+.+..+ ...++|+.|++++|.+. +..| .+..+++|+.|++++
T Consensus 410 L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~ 489 (680)
T 1ziw_A 410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489 (680)
T ss_dssp EECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCS
T ss_pred EeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCC
Confidence 55555554444432 4445555555555555443333 11255666666666554 3344 778888899999999
Q ss_pred CcCCCCCchhhcCCCCCcEEEccCCcCCccCC--------CCCCCCCCCCEEEccCCcCCCcchhhhcCCCCCCEEEccC
Q 038636 259 NRFTGAISHEVLTLPQVVSIDVSVNRLTAIEM--------TTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLTSINLAR 330 (409)
Q Consensus 259 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--------~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~ 330 (409)
|++++..+..+..+++|++|++++|++++... ..+..+++|++|++++|+++...+..|.++++|+.|+|++
T Consensus 490 N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 569 (680)
T 1ziw_A 490 NNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGL 569 (680)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCC
Confidence 99988777788889999999999998886422 2367888999999999999944445688999999999999
Q ss_pred CeecccCchhHhhhccCCccEEEccCCcCcccCchhhh-cCCCCCeEEcCCCccCCC
Q 038636 331 NQLSGHIPKVYGAKLGSSWRSLFLDHNFLWGNLPPEFS-SSITRIRGSLAKNCLSCP 386 (409)
Q Consensus 331 N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~p~~~~-~~~~L~~L~l~~N~l~~p 386 (409)
|++++..+..|..+.. |++|++++|++++..|..+. .+++|+.+++++|++.|.
T Consensus 570 N~l~~l~~~~~~~l~~--L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~ 624 (680)
T 1ziw_A 570 NNLNTLPASVFNNQVS--LKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCT 624 (680)
T ss_dssp SCCCCCCTTTTTTCTT--CCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBC
T ss_pred CCCCcCCHhHhCCCCC--CCEEECCCCcCCccChhHhcccccccCEEEccCCCcccC
Confidence 9999766666777765 99999999999987777777 788999999999999443
No 29
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=5.7e-33 Score=263.64 Aligned_cols=279 Identities=23% Similarity=0.330 Sum_probs=137.1
Q ss_pred CcEEEEEccCCCCCCCCccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEec
Q 038636 86 SRITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDL 165 (409)
Q Consensus 86 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l 165 (409)
.++++|+++++.+++..+ +.++++|++|++++|.+++ ++ .+.++++|++|++++|.+.+ +|. +..+++|++|++
T Consensus 66 ~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~l 139 (347)
T 4fmz_A 66 TNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELYLNEDNISD-ISP-LANLTKMYSLNL 139 (347)
T ss_dssp TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECTTSCCCC-CGG-GTTCTTCCEEEC
T ss_pred CCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEECcCCcccC-chh-hccCCceeEEEC
Confidence 345555555555544322 5555555555555555543 22 35555555555555555542 222 445555555555
Q ss_pred cCCcCCCCCchhhcCCCCCCeEEeecCcCCCCCCCCCCCCCcCEEeCCCCCCCCCCC-CCCCCCcEEEeecccCCCCCcc
Q 038636 166 SHNSLSGIIPAQLSGLRSLTALRLSHNAFSGKIPSLTGAWQLHTLDLDSNQLYGNLP-KFPTSLRTLSLSHNLLSGHLSS 244 (409)
Q Consensus 166 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~L~~L~l~~n~l~~~~~~ 244 (409)
++|.....++ .+..+++|++|++++|.+.+. +.+..+++|++|++++|.+.+..+ ...++|+.+++++|.+++..+
T Consensus 140 ~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~- 216 (347)
T 4fmz_A 140 GANHNLSDLS-PLSNMTGLNYLTVTESKVKDV-TPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP- 216 (347)
T ss_dssp TTCTTCCCCG-GGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-
T ss_pred CCCCCccccc-chhhCCCCcEEEecCCCcCCc-hhhccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCch-
Confidence 5554333322 245555555555555554422 224455555555555555544332 222455555555555544333
Q ss_pred cCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchhhhcCCCCCC
Q 038636 245 LRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLT 324 (409)
Q Consensus 245 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 324 (409)
+..+++|++|++++|.+++..+ +..+++|++|++++|.+++. +.+..+++|++|++++|.+++. + .+..+++|+
T Consensus 217 ~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~ 290 (347)
T 4fmz_A 217 VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI-S-VLNNLSQLN 290 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCS
T ss_pred hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC-h-hhcCCCCCC
Confidence 4445555555555555553322 44555555555555555542 3344555555555555555532 2 345555555
Q ss_pred EEEccCCeecccCchhHhhhccCCccEEEccCCcCcccCchhhhcCCCCCeEEcCCCcc
Q 038636 325 SINLARNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWGNLPPEFSSSITRIRGSLAKNCL 383 (409)
Q Consensus 325 ~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~l~~N~l 383 (409)
.|++++|++++..|..+..++. |++|++++|.+++..| +..+++|++|++++|++
T Consensus 291 ~L~L~~n~l~~~~~~~l~~l~~--L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 291 SLFLNNNQLGNEDMEVIGGLTN--LTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345 (347)
T ss_dssp EEECCSSCCCGGGHHHHHTCTT--CSEEECCSSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred EEECcCCcCCCcChhHhhcccc--CCEEEccCCccccccC--hhhhhccceeehhhhcc
Confidence 5555555555555555554433 5555555555553333 44555555555555543
No 30
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=7.2e-33 Score=262.90 Aligned_cols=291 Identities=23% Similarity=0.283 Sum_probs=252.8
Q ss_pred CCcEEEEEccCCCCCCCCccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEe
Q 038636 85 TSRITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLD 164 (409)
Q Consensus 85 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~ 164 (409)
..++++|+++++.+... + .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+++ +| .+.++++|++|+
T Consensus 43 l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~ 116 (347)
T 4fmz_A 43 LESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELY 116 (347)
T ss_dssp HTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEE
T ss_pred cccccEEEEeCCccccc-h-hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEE
Confidence 46789999999998764 3 48899999999999999985 444 9999999999999999984 54 699999999999
Q ss_pred ccCCcCCCCCchhhcCCCCCCeEEeecCcCCCCCCCCCCCCCcCEEeCCCCCCCCCCC-CCCCCCcEEEeecccCCCCCc
Q 038636 165 LSHNSLSGIIPAQLSGLRSLTALRLSHNAFSGKIPSLTGAWQLHTLDLDSNQLYGNLP-KFPTSLRTLSLSHNLLSGHLS 243 (409)
Q Consensus 165 l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~L~~L~l~~n~l~~~~~ 243 (409)
+++|.+++. +. +..+++|++|++++|.....++.+..+++|++|++++|.+.+..+ ...++|++|++++|.+.+..+
T Consensus 117 l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 194 (347)
T 4fmz_A 117 LNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP 194 (347)
T ss_dssp CTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG
T ss_pred CcCCcccCc-hh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccccc
Confidence 999999864 44 889999999999999877777789999999999999999887665 444899999999999987654
Q ss_pred ccCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchhhhcCCCCC
Q 038636 244 SLRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNL 323 (409)
Q Consensus 244 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L 323 (409)
+..+++|+.|++++|.+++..+ +..+++|++|++++|++++..+ +..+++|++|++++|.+++. ..+..+++|
T Consensus 195 -~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L 267 (347)
T 4fmz_A 195 -LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKL 267 (347)
T ss_dssp -GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred -ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCc
Confidence 8889999999999999997654 8899999999999999997443 88999999999999999954 468899999
Q ss_pred CEEEccCCeecccCchhHhhhccCCccEEEccCCcCcccCchhhhcCCCCCeEEcCCCcc-CCCchhhhccCC
Q 038636 324 TSINLARNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWGNLPPEFSSSITRIRGSLAKNCL-SCPETIRLCHGG 395 (409)
Q Consensus 324 ~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~l~~N~l-~~p~~l~~~~~~ 395 (409)
++|++++|++++. + .+..++. |++|++++|.+++..|..+..+++|+.|++++|++ .+++ +..+..+
T Consensus 268 ~~L~l~~n~l~~~-~-~~~~l~~--L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L 335 (347)
T 4fmz_A 268 KMLNVGSNQISDI-S-VLNNLSQ--LNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKM 335 (347)
T ss_dssp CEEECCSSCCCCC-G-GGGGCTT--CSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTC
T ss_pred CEEEccCCccCCC-h-hhcCCCC--CCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhcc
Confidence 9999999999864 3 4666655 99999999999999999999999999999999999 5554 6666554
No 31
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=1.8e-33 Score=265.61 Aligned_cols=287 Identities=23% Similarity=0.276 Sum_probs=238.0
Q ss_pred cEEEEEccCCCCCCCCccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEecc
Q 038636 87 RITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLS 166 (409)
Q Consensus 87 ~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~ 166 (409)
+++.++++++.++. +|..+ .++|++|++++|.+++..|..|.++++|++|++++|.+++..|..++++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLKA-VPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCSS-CCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCccc-cCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 34567777777764 55555 3689999999999987777789999999999999999998778899999999999999
Q ss_pred CCcCCCCCchhhcCCCCCCeEEeecCcCCCCCCC-CCCCCCcCEEeCCCCCCCC--CCCCCC--CCCcEEEeecccCCCC
Q 038636 167 HNSLSGIIPAQLSGLRSLTALRLSHNAFSGKIPS-LTGAWQLHTLDLDSNQLYG--NLPKFP--TSLRTLSLSHNLLSGH 241 (409)
Q Consensus 167 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~--~~~~~~--~~L~~L~l~~n~l~~~ 241 (409)
+|.++ .+|..+. ++|++|++++|.+.+..+. +..+++|++|++++|.++. ..+... .+|++|++++|.+++.
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l 187 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGI 187 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSC
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCcc
Confidence 99998 5666554 7899999999999865554 8889999999999999863 444221 2899999999999886
Q ss_pred CcccCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchhhhcCCC
Q 038636 242 LSSLRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLR 321 (409)
Q Consensus 242 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~ 321 (409)
+..+. ++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|+++ .+|..+..++
T Consensus 188 ~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~ 264 (332)
T 2ft3_A 188 PKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLK 264 (332)
T ss_dssp CSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCT
T ss_pred Ccccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCc
Confidence 55443 78999999999999888889999999999999999999977778889999999999999999 8888899999
Q ss_pred CCCEEEccCCeecccCchhHhhhc----cCCccEEEccCCcCc--ccCchhhhcCCCCCeEEcCCCc
Q 038636 322 NLTSINLARNQLSGHIPKVYGAKL----GSSWRSLFLDHNFLW--GNLPPEFSSSITRIRGSLAKNC 382 (409)
Q Consensus 322 ~L~~L~L~~N~l~~~~p~~~~~~~----~~~L~~L~L~~N~l~--~~~p~~~~~~~~L~~L~l~~N~ 382 (409)
+|+.|++++|++++..+..|.... .++|+.|++++|.+. +..|..+..+++|+.+++++|+
T Consensus 265 ~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 265 LLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp TCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 999999999999977777665431 245899999999987 5677889999999999999985
No 32
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=1.1e-34 Score=273.39 Aligned_cols=283 Identities=19% Similarity=0.252 Sum_probs=185.1
Q ss_pred CChhhHHHHHHHHhhCCCCCCCCCCCCCCC----CCCCCCCCCCCCceeeeecCCCC----CCCCCcEEEEEccCCCCCC
Q 038636 29 TLATDTQVLRLLKRSIDPNTIPRSSFLDSW----DFKLDPCESSGGQFLGILCSIPS----DNSTSRITAIYLDSSGYDG 100 (409)
Q Consensus 29 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~w----~~~~~~C~~~~~~w~gv~c~~~~----~~~~~~v~~L~L~~~~l~~ 100 (409)
...+|++||++||..+. .++..+...| ....++|. |.|+.|+... .....+|+.|+++++.++
T Consensus 24 ~~~~~~~aLl~~k~~~~---~~~~~~~~~w~~~~~~~~~~~~-----~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~- 94 (328)
T 4fcg_A 24 ALRPYHDVLSQWQRHYN---ADRNRWHSAWRQANSNNPQIET-----RTGRALKATADLLEDATQPGRVALELRSVPLP- 94 (328)
T ss_dssp CCCCHHHHHHHHHHHHH---HCCTTHHHHHHHHTTTCTTSCC-----SHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-
T ss_pred cCchHHHHHHHHHHhcc---CCchhhhhhhcccccccccccc-----cCCcchhhhHHHHhcccccceeEEEccCCCch-
Confidence 45678999999999873 2344556788 34567787 5999995200 000355666666666665
Q ss_pred CCccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEeccCCcCCCCCchhhcC
Q 038636 101 FLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHNSLSGIIPAQLSG 180 (409)
Q Consensus 101 ~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~ 180 (409)
.+|+.++++++|++|++++|.++ .+|..++++++|++|++++|.++ .+|..++++++|++|++++|++.+.+|..+..
T Consensus 95 ~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~ 172 (328)
T 4fcg_A 95 QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAS 172 (328)
T ss_dssp SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEE
T ss_pred hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhh
Confidence 44555666666666666666666 56666666666666666666666 55666666666666666665555555554432
Q ss_pred CCCCCeEEeecCcCCCCCCCCCCCCCcCEEeCCCCCCCCCCCCCCCCCcEEEeecccCCCCCcccCCCCCCCEEEeeCCc
Q 038636 181 LRSLTALRLSHNAFSGKIPSLTGAWQLHTLDLDSNQLYGNLPKFPTSLRTLSLSHNLLSGHLSSLRNLVNLKSLDLSSNR 260 (409)
Q Consensus 181 l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~ 260 (409)
. .+.+ .+..+ ++|++|++++|.++..+..++.+++|++|++++|.
T Consensus 173 ~-----------~~~~---~~~~l---------------------~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~ 217 (328)
T 4fcg_A 173 T-----------DASG---EHQGL---------------------VNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP 217 (328)
T ss_dssp E-----------C-CC---CEEES---------------------TTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSC
T ss_pred c-----------cchh---hhccC---------------------CCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCC
Confidence 0 0000 01122 24455555555555332366677777778888777
Q ss_pred CCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchhhhcCCCCCCEEEccCCeecccCchh
Q 038636 261 FTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLTSINLARNQLSGHIPKV 340 (409)
Q Consensus 261 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~ 340 (409)
+++ +|..+..+++|++|++++|++.+..+..+..+++|++|++++|.+.+.+|..+.++++|+.|+|++|++.+.+|..
T Consensus 218 l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~ 296 (328)
T 4fcg_A 218 LSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296 (328)
T ss_dssp CCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGG
T ss_pred CCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHH
Confidence 774 4556777788888888887777766667777888888888888888888888888888888888888888888888
Q ss_pred HhhhccCCccEEEccCCcCc
Q 038636 341 YGAKLGSSWRSLFLDHNFLW 360 (409)
Q Consensus 341 ~~~~~~~~L~~L~L~~N~l~ 360 (409)
++.++. |+.+++..+.+.
T Consensus 297 l~~L~~--L~~l~l~~~~~~ 314 (328)
T 4fcg_A 297 IAQLPA--NCIILVPPHLQA 314 (328)
T ss_dssp GGGSCT--TCEEECCGGGSC
T ss_pred HhhccC--ceEEeCCHHHHH
Confidence 888766 888887776654
No 33
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=5.8e-33 Score=261.85 Aligned_cols=286 Identities=21% Similarity=0.275 Sum_probs=211.0
Q ss_pred EEEEEccCCCCCCCCccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEeccC
Q 038636 88 ITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSH 167 (409)
Q Consensus 88 v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~ 167 (409)
++.++++++.++. +|..+. +.+++|++++|.+++..+..|+++++|++|++++|.+++..|..++++++|++|++++
T Consensus 33 l~~l~~~~~~l~~-lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 33 LRVVQCSDLGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp TTEEECTTSCCCS-CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CeEEEecCCCccc-cCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 3445555555553 343332 5777777777777766666777777778888877777766677777777788888777
Q ss_pred CcCCCCCchhhcCCCCCCeEEeecCcCCCCCCC-CCCCCCcCEEeCCCCCCCC--CCCC---CCCCCcEEEeecccCCCC
Q 038636 168 NSLSGIIPAQLSGLRSLTALRLSHNAFSGKIPS-LTGAWQLHTLDLDSNQLYG--NLPK---FPTSLRTLSLSHNLLSGH 241 (409)
Q Consensus 168 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~--~~~~---~~~~L~~L~l~~n~l~~~ 241 (409)
|.++ .+|..+. ++|++|++++|.+.+..+. +..+++|++|++++|.+.. ..+. -.++|++|++++|.++..
T Consensus 110 n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l 186 (330)
T 1xku_A 110 NQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI 186 (330)
T ss_dssp SCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred CcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC
Confidence 7776 4555443 6777777777777755444 6777777788877777753 3331 236778888888877765
Q ss_pred CcccCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchhhhcCCC
Q 038636 242 LSSLRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLR 321 (409)
Q Consensus 242 ~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~ 321 (409)
+..+. ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+|..+..++
T Consensus 187 ~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~ 263 (330)
T 1xku_A 187 PQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHK 263 (330)
T ss_dssp CSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCS
T ss_pred Ccccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCC
Confidence 44333 78999999999998888888999999999999999999877777888899999999999998 7888899999
Q ss_pred CCCEEEccCCeecccCchhHhhh----ccCCccEEEccCCcCcc--cCchhhhcCCCCCeEEcCCCc
Q 038636 322 NLTSINLARNQLSGHIPKVYGAK----LGSSWRSLFLDHNFLWG--NLPPEFSSSITRIRGSLAKNC 382 (409)
Q Consensus 322 ~L~~L~L~~N~l~~~~p~~~~~~----~~~~L~~L~L~~N~l~~--~~p~~~~~~~~L~~L~l~~N~ 382 (409)
+|++|++++|++++..+..|+.. ..+.++.|++++|.+.. ..|..+..+..++.+++++|+
T Consensus 264 ~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 264 YIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 99999999999997766666432 11448899999998863 456778888899999999885
No 34
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2e-32 Score=270.31 Aligned_cols=280 Identities=28% Similarity=0.360 Sum_probs=157.8
Q ss_pred CCcEEEEEccCCCCCCCCccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEe
Q 038636 85 TSRITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLD 164 (409)
Q Consensus 85 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~ 164 (409)
..+++.|+++++.+++..+ +.++++|++|++++|.+++..+ ++++++|++|++++|.+.+ +|. +.++++|++|+
T Consensus 67 l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~~L~ 140 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITD-IDP-LKNLTNLNRLE 140 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CGG-GTTCTTCSEEE
T ss_pred hcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCC-ChH-HcCCCCCCEEE
Confidence 4567777777777776543 7777777777777777775433 7777777777777777764 333 66777777777
Q ss_pred ccCCcCCCCCc--------------------hhhcCCCCCCeEEeecCcCCCCCCCCCCCCCcCEEeCCCCCCCCCCC-C
Q 038636 165 LSHNSLSGIIP--------------------AQLSGLRSLTALRLSHNAFSGKIPSLTGAWQLHTLDLDSNQLYGNLP-K 223 (409)
Q Consensus 165 l~~n~l~~~~p--------------------~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~ 223 (409)
+++|.+.+. + ..+.++++|++|++++|.+.+ ++.+..+++|++|++++|.+.+..+ .
T Consensus 141 l~~n~l~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~ 218 (466)
T 1o6v_A 141 LSSNTISDI-SALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD-ISVLAKLTNLESLIATNNQISDITPLG 218 (466)
T ss_dssp EEEEEECCC-GGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCCCGGGG
T ss_pred CCCCccCCC-hhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCC-ChhhccCCCCCEEEecCCccccccccc
Confidence 777766542 2 124455666666666666653 3445666666666666666665544 3
Q ss_pred CCCCCcEEEeecccCCCCCcccCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEE
Q 038636 224 FPTSLRTLSLSHNLLSGHLSSLRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELD 303 (409)
Q Consensus 224 ~~~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 303 (409)
..++|++|++++|.+++. +.+..+++|+.|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|++|+
T Consensus 219 ~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 293 (466)
T 1o6v_A 219 ILTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLE 293 (466)
T ss_dssp GCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEE
T ss_pred ccCCCCEEECCCCCcccc-hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEE
Confidence 335566666666655542 344455555555555555554333 4455555555555555554221 44444555555
Q ss_pred ccCCcCCCcchhhhcCCCCCCEEEccCCeecccCc--------------------hhHhhhccCCccEEEccCCcCcccC
Q 038636 304 VQGNLLRGHLPINLVSLRNLTSINLARNQLSGHIP--------------------KVYGAKLGSSWRSLFLDHNFLWGNL 363 (409)
Q Consensus 304 Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p--------------------~~~~~~~~~~L~~L~L~~N~l~~~~ 363 (409)
+++|++++..| +..+++|+.|++++|++++..| ..+..+.. |++|++++|++++..
T Consensus 294 L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~--L~~L~l~~n~l~~~~ 369 (466)
T 1o6v_A 294 LNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTN--INWLSAGHNQISDLT 369 (466)
T ss_dssp CCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTT--CCEEECCSSCCCBCG
T ss_pred cCCCcccCchh--hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCchhhccCCC--CCEEeCCCCccCccc
Confidence 55555443322 3444444444444444444333 22333333 555555555555444
Q ss_pred chhhhcCCCCCeEEcCCCcc
Q 038636 364 PPEFSSSITRIRGSLAKNCL 383 (409)
Q Consensus 364 p~~~~~~~~L~~L~l~~N~l 383 (409)
| +..+++|+.|++++|++
T Consensus 370 ~--~~~l~~L~~L~l~~n~~ 387 (466)
T 1o6v_A 370 P--LANLTRITQLGLNDQAW 387 (466)
T ss_dssp G--GTTCTTCCEEECCCEEE
T ss_pred h--hhcCCCCCEEeccCCcc
Confidence 3 45555555555555555
No 35
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.5e-33 Score=294.77 Aligned_cols=274 Identities=23% Similarity=0.232 Sum_probs=165.6
Q ss_pred CCcEEEEEccCCCCCCCC-ccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchh--ccCCCCCC
Q 038636 85 TSRITAIYLDSSGYDGFL-TPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVG--ITRLKKLQ 161 (409)
Q Consensus 85 ~~~v~~L~L~~~~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~--l~~l~~L~ 161 (409)
..+++.|+|++|...+.+ |..|+++++|++|+|++|.+++..|..|+++++|++|+|++|.+++.+|.. ++++++|+
T Consensus 47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~ 126 (844)
T 3j0a_A 47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALT 126 (844)
T ss_dssp CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCC
T ss_pred cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCC
Confidence 567788888887666555 566788888888888888888777888888888888888888887766655 77888888
Q ss_pred EEeccCCcCCCCCc-hhhcCCCCCCeEEeecCcCCCCCCC-CCCC--CCcCEEeCCCCCCCCCCCC-CC--------CCC
Q 038636 162 TLDLSHNSLSGIIP-AQLSGLRSLTALRLSHNAFSGKIPS-LTGA--WQLHTLDLDSNQLYGNLPK-FP--------TSL 228 (409)
Q Consensus 162 ~L~l~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~~~-~~~l--~~L~~L~l~~n~l~~~~~~-~~--------~~L 228 (409)
+|++++|.+++..+ ..++++++|++|++++|.+++..+. +..+ ++|+.|++++|.+.+..|. +. ..|
T Consensus 127 ~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L 206 (844)
T 3j0a_A 127 RLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVL 206 (844)
T ss_dssp EEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCB
T ss_pred EEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCce
Confidence 88888888876654 4678888888888888877765554 4333 4555555555555544331 10 124
Q ss_pred cEEEeecccCCCCCc-cc------------------------------------CC--CCCCCEEEeeCCcCCCCCchhh
Q 038636 229 RTLSLSHNLLSGHLS-SL------------------------------------RN--LVNLKSLDLSSNRFTGAISHEV 269 (409)
Q Consensus 229 ~~L~l~~n~l~~~~~-~l------------------------------------~~--l~~L~~L~l~~n~l~~~~~~~~ 269 (409)
+.|++++|.+++..+ .+ .. .++|+.|++++|.+.+..+..+
T Consensus 207 ~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~ 286 (844)
T 3j0a_A 207 EILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF 286 (844)
T ss_dssp SEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCS
T ss_pred eEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhh
Confidence 555555554333221 11 01 1345555555555555555555
Q ss_pred cCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchhhhcCCCCCCEEEccCCeecccCchhHhhhccCCc
Q 038636 270 LTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLTSINLARNQLSGHIPKVYGAKLGSSW 349 (409)
Q Consensus 270 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L 349 (409)
..+++|+.|++++|++++..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|++.+..+..|..+.. |
T Consensus 287 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~--L 364 (844)
T 3j0a_A 287 ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEK--L 364 (844)
T ss_dssp SSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCC--C
T ss_pred hcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCC--C
Confidence 55555555555555555544445555555555555555555444555555555555555555555444444444433 5
Q ss_pred cEEEccCCcCc
Q 038636 350 RSLFLDHNFLW 360 (409)
Q Consensus 350 ~~L~L~~N~l~ 360 (409)
++|++++|.++
T Consensus 365 ~~L~Ls~N~l~ 375 (844)
T 3j0a_A 365 QTLDLRDNALT 375 (844)
T ss_dssp CEEEEETCCSC
T ss_pred CEEECCCCCCC
Confidence 55555555554
No 36
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=4.9e-32 Score=255.47 Aligned_cols=281 Identities=20% Similarity=0.253 Sum_probs=239.8
Q ss_pred eeeeecCCCC-----CCCCCcEEEEEccCCCCCCCCccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccC
Q 038636 72 FLGILCSIPS-----DNSTSRITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFF 146 (409)
Q Consensus 72 w~gv~c~~~~-----~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~ 146 (409)
|..+.|.... ..-...++.|+++++.+++..+..|+++++|++|++++|.+++..|..|+++++|++|++++|.+
T Consensus 33 l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 112 (330)
T 1xku_A 33 LRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112 (330)
T ss_dssp TTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC
T ss_pred CeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcC
Confidence 5777776311 11146789999999999998877899999999999999999988899999999999999999999
Q ss_pred CccCchhccCCCCCCEEeccCCcCCCCCchhhcCCCCCCeEEeecCcCCC--CCCC-CCCCCCcCEEeCCCCCCCCCCCC
Q 038636 147 TGNIPVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTALRLSHNAFSG--KIPS-LTGAWQLHTLDLDSNQLYGNLPK 223 (409)
Q Consensus 147 ~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~~~-~~~l~~L~~L~l~~n~l~~~~~~ 223 (409)
+ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+.. ..+. +..+++|++|++++|.++.....
T Consensus 113 ~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~ 189 (330)
T 1xku_A 113 K-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG 189 (330)
T ss_dssp S-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS
T ss_pred C-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcc
Confidence 8 7787665 799999999999998888889999999999999999863 4444 88899999999999999875546
Q ss_pred CCCCCcEEEeecccCCCCCc-ccCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEE
Q 038636 224 FPTSLRTLSLSHNLLSGHLS-SLRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQEL 302 (409)
Q Consensus 224 ~~~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 302 (409)
+.++|++|++++|.+++..+ .+..+++|+.|++++|.+++..+..+..+++|++|++++|+++. .+..+..+++|++|
T Consensus 190 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-lp~~l~~l~~L~~L 268 (330)
T 1xku_A 190 LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVV 268 (330)
T ss_dssp CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS-CCTTTTTCSSCCEE
T ss_pred ccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCcc-CChhhccCCCcCEE
Confidence 66899999999999998877 89999999999999999998888889999999999999999996 55678889999999
Q ss_pred EccCCcCCCcchhhhcC------CCCCCEEEccCCeecc--cCchhHhhhccCCccEEEccCCc
Q 038636 303 DVQGNLLRGHLPINLVS------LRNLTSINLARNQLSG--HIPKVYGAKLGSSWRSLFLDHNF 358 (409)
Q Consensus 303 ~Ls~n~l~~~~p~~l~~------l~~L~~L~L~~N~l~~--~~p~~~~~~~~~~L~~L~L~~N~ 358 (409)
++++|.+++..+..|.. .+.++.|++++|.+.. ..|..|..... ++.++|++|+
T Consensus 269 ~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~--l~~l~L~~N~ 330 (330)
T 1xku_A 269 YLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV--RAAVQLGNYK 330 (330)
T ss_dssp ECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCC--GGGEEC----
T ss_pred ECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccc--eeEEEecccC
Confidence 99999999766666643 3789999999998863 55666766655 9999999985
No 37
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=4.2e-32 Score=256.16 Aligned_cols=280 Identities=20% Similarity=0.263 Sum_probs=240.2
Q ss_pred eeeeecCCCC-----CCCCCcEEEEEccCCCCCCCCccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccC
Q 038636 72 FLGILCSIPS-----DNSTSRITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFF 146 (409)
Q Consensus 72 w~gv~c~~~~-----~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~ 146 (409)
|..+.|.... .....+++.|+++++.+++..+..|.++++|++|++++|.+++..|..|+++++|++|++++|.+
T Consensus 35 l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 114 (332)
T 2ft3_A 35 LRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL 114 (332)
T ss_dssp TTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCC
T ss_pred CCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcC
Confidence 4778876311 11145899999999999988888899999999999999999988899999999999999999999
Q ss_pred CccCchhccCCCCCCEEeccCCcCCCCCchhhcCCCCCCeEEeecCcCCC--CCCC-CCCCCCcCEEeCCCCCCCCCCCC
Q 038636 147 TGNIPVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTALRLSHNAFSG--KIPS-LTGAWQLHTLDLDSNQLYGNLPK 223 (409)
Q Consensus 147 ~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~--~~~~-~~~l~~L~~L~l~~n~l~~~~~~ 223 (409)
. .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.++. ..+. +..+ +|++|++++|.+++....
T Consensus 115 ~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~ 190 (332)
T 2ft3_A 115 V-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKD 190 (332)
T ss_dssp C-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSS
T ss_pred C-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcc
Confidence 8 7787765 899999999999997777789999999999999999863 4444 6666 999999999999985556
Q ss_pred CCCCCcEEEeecccCCCCCc-ccCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEE
Q 038636 224 FPTSLRTLSLSHNLLSGHLS-SLRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQEL 302 (409)
Q Consensus 224 ~~~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L 302 (409)
+.++|++|++++|.+++..+ .+..+++|+.|++++|.+++..+..+..+++|++|++++|+++. .+..+..+++|++|
T Consensus 191 ~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-lp~~l~~l~~L~~L 269 (332)
T 2ft3_A 191 LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVV 269 (332)
T ss_dssp SCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCB-CCTTGGGCTTCCEE
T ss_pred ccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCee-cChhhhcCccCCEE
Confidence 67899999999999999887 89999999999999999999888899999999999999999996 55668889999999
Q ss_pred EccCCcCCCcchhhhcC------CCCCCEEEccCCeec--ccCchhHhhhccCCccEEEccCCc
Q 038636 303 DVQGNLLRGHLPINLVS------LRNLTSINLARNQLS--GHIPKVYGAKLGSSWRSLFLDHNF 358 (409)
Q Consensus 303 ~Ls~n~l~~~~p~~l~~------l~~L~~L~L~~N~l~--~~~p~~~~~~~~~~L~~L~L~~N~ 358 (409)
++++|.+++..+..+.. .+.|+.|++++|.+. +..|..|..+.. |+.+++++|+
T Consensus 270 ~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~--L~~l~l~~n~ 331 (332)
T 2ft3_A 270 YLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTD--RLAIQFGNYK 331 (332)
T ss_dssp ECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCC--STTEEC----
T ss_pred ECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccch--hhhhhccccc
Confidence 99999999776666654 367999999999887 677777877766 9999999985
No 38
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=9.9e-32 Score=265.34 Aligned_cols=259 Identities=26% Similarity=0.330 Sum_probs=175.9
Q ss_pred CCcEEEEEccCCCCCCCCccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCch------------
Q 038636 85 TSRITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPV------------ 152 (409)
Q Consensus 85 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~------------ 152 (409)
..+++.|+++++.+.+..+ ++++++|++|++++|.+++. +. +.++++|++|++++|.+.+ ++.
T Consensus 89 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l 163 (466)
T 1o6v_A 89 LTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI-DP-LKNLTNLNRLELSSNTISD-ISALSGLTSLQQLSF 163 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GG-GTTCTTCSEEEEEEEEECC-CGGGTTCTTCSEEEE
T ss_pred cccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCC-hH-HcCCCCCCEEECCCCccCC-ChhhccCCcccEeec
Confidence 4567777777777766543 67777777777777776643 22 5666666666666665542 211
Q ss_pred --------hccCCCCCCEEeccCCcCCCCCchhhcCCCCCCeEEeecCcCCCC---------------------CCCCCC
Q 038636 153 --------GITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTALRLSHNAFSGK---------------------IPSLTG 203 (409)
Q Consensus 153 --------~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~---------------------~~~~~~ 203 (409)
.++++++|++|++++|.+++. ..+..+++|++|++++|.+.+. ++.+..
T Consensus 164 ~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~ 241 (466)
T 1o6v_A 164 GNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLAS 241 (466)
T ss_dssp EESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGG
T ss_pred CCcccCchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhc
Confidence 134445555555555555432 2244444455555544444432 234555
Q ss_pred CCCcCEEeCCCCCCCCCCC-CCCCCCcEEEeecccCCCCCcccCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccC
Q 038636 204 AWQLHTLDLDSNQLYGNLP-KFPTSLRTLSLSHNLLSGHLSSLRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSV 282 (409)
Q Consensus 204 l~~L~~L~l~~n~l~~~~~-~~~~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 282 (409)
+++|++|++++|.+.+..+ ...++|++|++++|.+++..+ +..+++|+.|++++|++++..+ +..+++|+.|++++
T Consensus 242 l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~ 318 (466)
T 1o6v_A 242 LTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYF 318 (466)
T ss_dssp CTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCS
T ss_pred CCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcC
Confidence 5666666666666665544 333677777777777776554 6777788888888888876544 67788888888888
Q ss_pred CcCCccCCCCCCCCCCCCEEEccCCcCCCcchhhhcCCCCCCEEEccCCeecccCchhHhhhccCCccEEEccCCcCcc
Q 038636 283 NRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLTSINLARNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWG 361 (409)
Q Consensus 283 n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~ 361 (409)
|++++..+ +..+++|++|++++|.+++. ..+..+++|+.|++++|++++..| +..++. |++|++++|.+++
T Consensus 319 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~--L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 319 NNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTR--ITQLGLNDQAWTN 389 (466)
T ss_dssp SCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTT--CCEEECCCEEEEC
T ss_pred CcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCC--CCEEeccCCcccC
Confidence 88887433 67888999999999998865 468899999999999999998887 677765 9999999999996
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=3.9e-32 Score=262.12 Aligned_cols=269 Identities=24% Similarity=0.245 Sum_probs=230.7
Q ss_pred CCcEEEEEccCCCCCCCCccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchh-ccCCCCCCEE
Q 038636 85 TSRITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVG-ITRLKKLQTL 163 (409)
Q Consensus 85 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~-l~~l~~L~~L 163 (409)
..+++.|+++++.+++..+..|.++++|++|++++|.+++..|..++++++|++|++++|.++ .+|.. ++++++|++|
T Consensus 68 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L 146 (390)
T 3o6n_A 68 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTL 146 (390)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred cccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEE
Confidence 468999999999999888888999999999999999999888888999999999999999999 55654 6899999999
Q ss_pred eccCCcCCCCCchhhcCCCCCCeEEeecCcCCCCCCCCCCCC-------------------CcCEEeCCCCCCCCCCCCC
Q 038636 164 DLSHNSLSGIIPAQLSGLRSLTALRLSHNAFSGKIPSLTGAW-------------------QLHTLDLDSNQLYGNLPKF 224 (409)
Q Consensus 164 ~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~-------------------~L~~L~l~~n~l~~~~~~~ 224 (409)
++++|.+++..|..+..+++|++|++++|.+++.. +..++ +|++|++++|.+.......
T Consensus 147 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~ 224 (390)
T 3o6n_A 147 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV 224 (390)
T ss_dssp ECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCC
T ss_pred ECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccccccccCCCCcceEEECCCCeeeeccccc
Confidence 99999999888888999999999999999988542 23333 4555666666655443355
Q ss_pred CCCCcEEEeecccCCCCCcccCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEc
Q 038636 225 PTSLRTLSLSHNLLSGHLSSLRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDV 304 (409)
Q Consensus 225 ~~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L 304 (409)
.++|+.|++++|.+++. +.+..+++|++|++++|.+++..|..+..+++|++|++++|++++. +..+..+++|++|++
T Consensus 225 ~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L 302 (390)
T 3o6n_A 225 NVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDL 302 (390)
T ss_dssp CSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE-ECSSSCCTTCCEEEC
T ss_pred cccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc-CcccCCCCCCCEEEC
Confidence 57999999999999875 6788999999999999999998899999999999999999999984 455678899999999
Q ss_pred cCCcCCCcchhhhcCCCCCCEEEccCCeecccCchhHhhhccCCccEEEccCCcCcccCc
Q 038636 305 QGNLLRGHLPINLVSLRNLTSINLARNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWGNLP 364 (409)
Q Consensus 305 s~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~p 364 (409)
++|+++ .+|..+..+++|+.|++++|++++. | +..+.. |++|++++|.+.+.-.
T Consensus 303 ~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~--L~~L~l~~N~~~~~~~ 356 (390)
T 3o6n_A 303 SHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHT--LKNLTLSHNDWDCNSL 356 (390)
T ss_dssp CSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCC--CSEEECCSSCEEHHHH
T ss_pred CCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhcc--CCEEEcCCCCccchhH
Confidence 999999 6788889999999999999999854 3 444544 9999999999987533
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=3.9e-32 Score=276.25 Aligned_cols=270 Identities=23% Similarity=0.205 Sum_probs=232.7
Q ss_pred CCcEEEEEccCCCCCCCCccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEe
Q 038636 85 TSRITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLD 164 (409)
Q Consensus 85 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~ 164 (409)
..+++.|+++++.+++..+..|+.+++|++|+|++|.+++..|..|+++++|++|+|++|.+++..+..|+++++|++|+
T Consensus 74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 153 (597)
T 3oja_B 74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLS 153 (597)
T ss_dssp CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEE
Confidence 46799999999999998888999999999999999999988888899999999999999999954444579999999999
Q ss_pred ccCCcCCCCCchhhcCCCCCCeEEeecCcCCCCCCCCCCCC-------------------CcCEEeCCCCCCCCCCCCCC
Q 038636 165 LSHNSLSGIIPAQLSGLRSLTALRLSHNAFSGKIPSLTGAW-------------------QLHTLDLDSNQLYGNLPKFP 225 (409)
Q Consensus 165 l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~-------------------~L~~L~l~~n~l~~~~~~~~ 225 (409)
+++|.+++..|..+..+++|++|++++|.+++.. +..++ +|+.|++++|.+....+...
T Consensus 154 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~ 231 (597)
T 3oja_B 154 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN 231 (597)
T ss_dssp CCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCC
T ss_pred eeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccC
Confidence 9999999988889999999999999999988642 23333 45555555555554444555
Q ss_pred CCCcEEEeecccCCCCCcccCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEcc
Q 038636 226 TSLRTLSLSHNLLSGHLSSLRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQ 305 (409)
Q Consensus 226 ~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls 305 (409)
++|+.|++++|.+++. +.+..+++|+.|++++|.+++..|..+..+++|+.|+|++|.++++ +..+..+++|+.|+|+
T Consensus 232 ~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls 309 (597)
T 3oja_B 232 VELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLS 309 (597)
T ss_dssp SCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECC
T ss_pred CCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC-CcccccCCCCcEEECC
Confidence 7899999999999974 6888999999999999999999999999999999999999999984 5566779999999999
Q ss_pred CCcCCCcchhhhcCCCCCCEEEccCCeecccCchhHhhhccCCccEEEccCCcCcccCc
Q 038636 306 GNLLRGHLPINLVSLRNLTSINLARNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWGNLP 364 (409)
Q Consensus 306 ~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~p 364 (409)
+|.++ .+|..+..+++|+.|+|++|.+++.. +..++. |++|++++|.+.+..+
T Consensus 310 ~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~--L~~L~l~~N~~~~~~~ 362 (597)
T 3oja_B 310 HNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHT--LKNLTLSHNDWDCNSL 362 (597)
T ss_dssp SSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCC--CSEEECCSSCEEHHHH
T ss_pred CCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCC--CCEEEeeCCCCCChhH
Confidence 99999 78888999999999999999998653 344444 9999999999987543
No 41
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3.4e-32 Score=274.02 Aligned_cols=191 Identities=21% Similarity=0.241 Sum_probs=158.2
Q ss_pred CCCCCCCCccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEeccCCcCCCCC
Q 038636 95 SSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHNSLSGII 174 (409)
Q Consensus 95 ~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~ 174 (409)
+++++. +|+.+. ++|++|++++|.+++..|..|.++++|++|++++|.+++..|..|+++++|++|++++|.+++..
T Consensus 14 ~~~l~~-ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 90 (549)
T 2z81_A 14 SRSFTS-IPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLS 90 (549)
T ss_dssp TSCCSS-CCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCC
T ss_pred CCcccc-ccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccC
Confidence 445554 455453 79999999999999888899999999999999999999888889999999999999999999888
Q ss_pred chhhcCCCCCCeEEeecCcCCCC-CC-CCCCCCCcCEEeCCCCCCCCCCC--CC--CCCCcEEEeecccCCCCCc-ccCC
Q 038636 175 PAQLSGLRSLTALRLSHNAFSGK-IP-SLTGAWQLHTLDLDSNQLYGNLP--KF--PTSLRTLSLSHNLLSGHLS-SLRN 247 (409)
Q Consensus 175 p~~l~~l~~L~~L~L~~n~l~~~-~~-~~~~l~~L~~L~l~~n~l~~~~~--~~--~~~L~~L~l~~n~l~~~~~-~l~~ 247 (409)
|..++++++|++|++++|.+++. .| .+..+++|++|++++|.+.+.+| .+ .++|++|++++|.+++..+ .++.
T Consensus 91 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 170 (549)
T 2z81_A 91 SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKS 170 (549)
T ss_dssp HHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT
T ss_pred HHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhc
Confidence 88899999999999999999863 34 48999999999999998665555 22 3789999999999998777 8888
Q ss_pred CCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCcc
Q 038636 248 LVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAI 288 (409)
Q Consensus 248 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 288 (409)
+++|++|++++|.+.......+..+++|++|++++|++++.
T Consensus 171 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 211 (549)
T 2z81_A 171 IRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARF 211 (549)
T ss_dssp CSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTC
T ss_pred cccCceEecccCcccccchhhHhhcccccEEEccCCccccc
Confidence 88888888888877633322335677888888888777763
No 42
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.2e-31 Score=261.69 Aligned_cols=276 Identities=25% Similarity=0.230 Sum_probs=193.0
Q ss_pred CCcEEEEEccCCCCCCCCccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEe
Q 038636 85 TSRITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLD 164 (409)
Q Consensus 85 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~ 164 (409)
..+++.|++++|.+++. + ++.+++|++|++++|.+++. + ++++++|++|++++|.+++ +| ++.+++|++|+
T Consensus 63 l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~ 133 (457)
T 3bz5_A 63 LTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLN 133 (457)
T ss_dssp CTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEE
T ss_pred cCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEE
Confidence 45677777777777774 2 67777777777777777753 3 6777777777777777774 44 67777777777
Q ss_pred ccCCcCCCCCchhhcCCCCCCeEEeecCcCCCCCCCCCCCCCcCEEeCCCCCCCCCCCCCCCCCcEEEeecccCCCCCcc
Q 038636 165 LSHNSLSGIIPAQLSGLRSLTALRLSHNAFSGKIPSLTGAWQLHTLDLDSNQLYGNLPKFPTSLRTLSLSHNLLSGHLSS 244 (409)
Q Consensus 165 l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~ 244 (409)
+++|.+++. + ++.+++|++|++++|...+.+ .+..+++|++|++++|.+++......++|+.|++++|.+++. .
T Consensus 134 l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N~l~~~--~ 207 (457)
T 3bz5_A 134 CARNTLTEI-D--VSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNITKL--D 207 (457)
T ss_dssp CTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC-CCTTCTTCCEEECCSSCCCCCCCTTCTTCCEEECCSSCCSCC--C
T ss_pred CCCCcccee-c--cccCCcCCEEECCCCCccccc-ccccCCcCCEEECCCCccceeccccCCCCCEEECcCCcCCee--c
Confidence 777777763 2 667777777777777655555 466777788888888877764323347788888888887765 4
Q ss_pred cCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCC-------CCCEEEccCCcCCCcchhhh
Q 038636 245 LRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDT-------HLQELDVQGNLLRGHLPINL 317 (409)
Q Consensus 245 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~-------~L~~L~Ls~n~l~~~~p~~l 317 (409)
++.+++|+.|++++|++++ +| +..+++|++|++++|++++.++..+..+. +|+.|++++|.+.+.+| +
T Consensus 208 l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~ 282 (457)
T 3bz5_A 208 LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--A 282 (457)
T ss_dssp CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--C
T ss_pred cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc--c
Confidence 7777888888888888886 44 67788888888888888876544444333 45556666666666666 4
Q ss_pred cCCCCCCEEEccCCeecccCchhH--------hhhccCCccEEEccCCcCcccCchhhhcCCCCCeEEcCCCcc-CC
Q 038636 318 VSLRNLTSINLARNQLSGHIPKVY--------GAKLGSSWRSLFLDHNFLWGNLPPEFSSSITRIRGSLAKNCL-SC 385 (409)
Q Consensus 318 ~~l~~L~~L~L~~N~l~~~~p~~~--------~~~~~~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~l~~N~l-~~ 385 (409)
+.+++|+.|++++|...+.+|... ... ++|++|++++|++++ ++ +.++++|+.|++++|++ .+
T Consensus 283 ~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~--~~L~~L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~l 354 (457)
T 3bz5_A 283 EGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQN--PKLVYLYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQDF 354 (457)
T ss_dssp TTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTC--TTCCEEECTTCCCSC-CC--CTTCTTCSEEECCSSCCCBC
T ss_pred cccccCCEEECCCCcccceeccCCCcceEechhhc--ccCCEEECCCCcccc-cc--cccCCcCcEEECCCCCCCCc
Confidence 566777777777777666666422 222 347788888888876 43 77777888888888877 44
No 43
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.6e-31 Score=262.56 Aligned_cols=284 Identities=24% Similarity=0.188 Sum_probs=239.1
Q ss_pred CCcEEEEEccCCCCCCCCccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEe
Q 038636 85 TSRITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLD 164 (409)
Q Consensus 85 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~ 164 (409)
..+++.|+++++.+++. | .++.+++|++|++++|.+++. | ++.+++|++|++++|.+++ +| ++++++|++|+
T Consensus 41 l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLN 112 (457)
T ss_dssp HTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEE
T ss_pred cCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEE
Confidence 46799999999999985 4 699999999999999999974 4 8999999999999999996 44 89999999999
Q ss_pred ccCCcCCCCCchhhcCCCCCCeEEeecCcCCCCCCCCCCCCCcCEEeCCCCCCCCCCC-CCCCCCcEEEeecccCCCCCc
Q 038636 165 LSHNSLSGIIPAQLSGLRSLTALRLSHNAFSGKIPSLTGAWQLHTLDLDSNQLYGNLP-KFPTSLRTLSLSHNLLSGHLS 243 (409)
Q Consensus 165 l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~L~~L~l~~n~l~~~~~ 243 (409)
+++|.+++ +| ++.+++|++|++++|.+++. .+..+++|++|++++|...+.++ ...++|++|++++|.+++..
T Consensus 113 L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l--~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~- 186 (457)
T 3bz5_A 113 CDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI--DVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD- 186 (457)
T ss_dssp CCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC--CCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC-
T ss_pred CCCCcCCe-ec--CCCCCcCCEEECCCCcccee--ccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec-
Confidence 99999997 44 88999999999999999974 48889999999999997666665 44589999999999999853
Q ss_pred ccCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchhhhcCCC--
Q 038636 244 SLRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLR-- 321 (409)
Q Consensus 244 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~-- 321 (409)
+..+++|+.|++++|++++. .+..+++|++|++++|++++++ +..+++|+.|++++|++++..+..+.+++
T Consensus 187 -l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~ip---~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L 259 (457)
T 3bz5_A 187 -VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELDVSTLSKLTTL 259 (457)
T ss_dssp -CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCCCTTCTTCCEE
T ss_pred -cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccccC---ccccCCCCEEEeeCCcCCCcCHHHCCCCCEE
Confidence 88999999999999999975 3889999999999999999843 78899999999999999976555544443
Q ss_pred -----CCCEEEccCCeecccCchhHhhhccCCccEEEccCCcCcccCchh--------hhcCCCCCeEEcCCCcc-CCCc
Q 038636 322 -----NLTSINLARNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWGNLPPE--------FSSSITRIRGSLAKNCL-SCPE 387 (409)
Q Consensus 322 -----~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~p~~--------~~~~~~L~~L~l~~N~l-~~p~ 387 (409)
+|+.|++++|.+.|.+|. +.+.. |++|++++|...+.+|.. +...++|++|++++|.+ .+|
T Consensus 260 ~l~~n~L~~L~l~~n~~~~~~~~--~~l~~--L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~- 334 (457)
T 3bz5_A 260 HCIQTDLLEIDLTHNTQLIYFQA--EGCRK--IKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD- 334 (457)
T ss_dssp ECTTCCCSCCCCTTCTTCCEEEC--TTCTT--CCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC-
T ss_pred eccCCCCCEEECCCCccCCcccc--ccccc--CCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccccc-
Confidence 566777777777777773 44544 999999999988887753 45567899999999999 553
Q ss_pred hhhhccCC
Q 038636 388 TIRLCHGG 395 (409)
Q Consensus 388 ~l~~~~~~ 395 (409)
+..|..+
T Consensus 335 -l~~l~~L 341 (457)
T 3bz5_A 335 -VSHNTKL 341 (457)
T ss_dssp -CTTCTTC
T ss_pred -cccCCcC
Confidence 6655544
No 44
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.1e-32 Score=258.09 Aligned_cols=232 Identities=32% Similarity=0.472 Sum_probs=178.1
Q ss_pred CCCcEEEccCCcCCC--CCcccccCCCCCcEEeccC-ccCCccCchhccCCCCCCEEeccCCcCCCCCchhhcCCCCCCe
Q 038636 110 TELTTLDLSRNNFRG--PIPDTITDLRKLTTLYLPG-NFFTGNIPVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTA 186 (409)
Q Consensus 110 ~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~-n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~ 186 (409)
.+++.|++++|.+++ .+|..++++++|++|++++ |.+.+.+|..++++++|++|++++|.+++.+|..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 467778888888777 6777777777777777774 7777777777777777777777777777667776766666666
Q ss_pred EEeecCcCCCCCCCCCCCCCcCEEeCCCCCCCCCCCCCCCCCcEEEeecccCCCCCcccCCCCCCCEEEeeCCcCCCCCc
Q 038636 187 LRLSHNAFSGKIPSLTGAWQLHTLDLDSNQLYGNLPKFPTSLRTLSLSHNLLSGHLSSLRNLVNLKSLDLSSNRFTGAIS 266 (409)
Q Consensus 187 L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 266 (409)
|++++|.+++.+|. .+..+++|++|++++|++++.+|
T Consensus 130 L~Ls~N~l~~~~p~-------------------------------------------~~~~l~~L~~L~L~~N~l~~~~p 166 (313)
T 1ogq_A 130 LDFSYNALSGTLPP-------------------------------------------SISSLPNLVGITFDGNRISGAIP 166 (313)
T ss_dssp EECCSSEEESCCCG-------------------------------------------GGGGCTTCCEEECCSSCCEEECC
T ss_pred EeCCCCccCCcCCh-------------------------------------------HHhcCCCCCeEECcCCcccCcCC
Confidence 66666666544443 33445556666666666665666
Q ss_pred hhhcCCC-CCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchhhhcCCCCCCEEEccCCeecccCchhHhhhc
Q 038636 267 HEVLTLP-QVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLTSINLARNQLSGHIPKVYGAKL 345 (409)
Q Consensus 267 ~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~ 345 (409)
..+..++ +|++|++++|++++..+..+..+. |++|++++|.+++.+|..+..+++|+.|++++|++++.+|. +....
T Consensus 167 ~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~ 244 (313)
T 1ogq_A 167 DSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSK 244 (313)
T ss_dssp GGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCT
T ss_pred HHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccC
Confidence 6666666 777777777777766666666665 88888888888888899999999999999999999987776 55554
Q ss_pred cCCccEEEccCCcCcccCchhhhcCCCCCeEEcCCCcc--CCCch
Q 038636 346 GSSWRSLFLDHNFLWGNLPPEFSSSITRIRGSLAKNCL--SCPET 388 (409)
Q Consensus 346 ~~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~l~~N~l--~~p~~ 388 (409)
. |++|++++|.+++.+|..+..+++|++|++++|++ .+|..
T Consensus 245 ~--L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~ 287 (313)
T 1ogq_A 245 N--LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG 287 (313)
T ss_dssp T--CCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred C--CCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC
Confidence 4 99999999999999999999999999999999999 67764
No 45
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.97 E-value=2.1e-30 Score=254.50 Aligned_cols=273 Identities=24% Similarity=0.327 Sum_probs=179.8
Q ss_pred CcEEEEEccCCCCCCCCccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEec
Q 038636 86 SRITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDL 165 (409)
Q Consensus 86 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l 165 (409)
.++++|++++|.+++ +| .++++++|++|++++|.+++ +|..+ ++|++|++++|.+++ +| .++++++|++|++
T Consensus 131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l 202 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYA 202 (454)
T ss_dssp TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEEC
T ss_pred CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEEC
Confidence 456667777776665 44 46777777777777777664 44432 467777777777764 55 4677777777777
Q ss_pred cCCcCCCCCchhhcCCCCCCeEEeecCcCCCCCCCCCCCCCcCEEeCCCCCCCCCCCCCCCCCcEEEeecccCCCCCccc
Q 038636 166 SHNSLSGIIPAQLSGLRSLTALRLSHNAFSGKIPSLTGAWQLHTLDLDSNQLYGNLPKFPTSLRTLSLSHNLLSGHLSSL 245 (409)
Q Consensus 166 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~l 245 (409)
++|.+++ +|... ++|++|++++|.+. .+|.+..+++|++|++++|.+++ +|...++|++|++++|.+++....
T Consensus 203 ~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp~~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~N~l~~l~~~- 275 (454)
T 1jl5_A 203 DNNSLKK-LPDLP---LSLESIVAGNNILE-ELPELQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLTDLPEL- 275 (454)
T ss_dssp CSSCCSS-CCCCC---TTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSCCSS-CCSCCTTCCEEECCSSCCSCCCCC-
T ss_pred CCCcCCc-CCCCc---CcccEEECcCCcCC-cccccCCCCCCCEEECCCCcCCc-ccccccccCEEECCCCcccccCcc-
Confidence 7777764 44322 46777777777776 56677778888888888888775 455557888888888888764322
Q ss_pred CCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchhhhcCCCCCCE
Q 038636 246 RNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLTS 325 (409)
Q Consensus 246 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 325 (409)
.++|+.|++++|.+++. |. -.++|++|++++|+++++. . ..++|++|++++|++++ +|.. +++|++
T Consensus 276 --~~~L~~L~ls~N~l~~l-~~---~~~~L~~L~l~~N~l~~i~--~--~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~ 341 (454)
T 1jl5_A 276 --PQSLTFLDVSENIFSGL-SE---LPPNLYYLNASSNEIRSLC--D--LPPSLEELNVSNNKLIE-LPAL---PPRLER 341 (454)
T ss_dssp --CTTCCEEECCSSCCSEE-SC---CCTTCCEEECCSSCCSEEC--C--CCTTCCEEECCSSCCSC-CCCC---CTTCCE
T ss_pred --cCcCCEEECcCCccCcc-cC---cCCcCCEEECcCCcCCccc--C--CcCcCCEEECCCCcccc-cccc---CCcCCE
Confidence 36788888888888752 21 1267888888888887632 1 12589999999999995 6654 589999
Q ss_pred EEccCCeecccCchhHhhhccCCccEEEccCCcCcc--cCchhhhcC-------------CCCCeEEcCCCcc----CCC
Q 038636 326 INLARNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWG--NLPPEFSSS-------------ITRIRGSLAKNCL----SCP 386 (409)
Q Consensus 326 L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~--~~p~~~~~~-------------~~L~~L~l~~N~l----~~p 386 (409)
|++++|+++ .+|. .. ++|++|++++|++++ .+|.++.++ ++|+.|++++|++ .+|
T Consensus 342 L~L~~N~l~-~lp~---~l--~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP 415 (454)
T 1jl5_A 342 LIASFNHLA-EVPE---LP--QNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIP 415 (454)
T ss_dssp EECCSSCCS-CCCC---CC--TTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------------
T ss_pred EECCCCccc-cccc---hh--hhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccch
Confidence 999999998 5676 23 349999999999998 789988888 7899999999998 577
Q ss_pred chhhhcc
Q 038636 387 ETIRLCH 393 (409)
Q Consensus 387 ~~l~~~~ 393 (409)
.++..+.
T Consensus 416 ~sl~~L~ 422 (454)
T 1jl5_A 416 ESVEDLR 422 (454)
T ss_dssp -------
T ss_pred hhHhhee
Confidence 7776543
No 46
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.97 E-value=3.7e-31 Score=259.86 Aligned_cols=211 Identities=21% Similarity=0.239 Sum_probs=119.9
Q ss_pred CCcEEEEEccCCCCCCCCccccCCCCCCcEEEccCCcCCCCCcccccCCCCC-------------cEEeccCccCCccCc
Q 038636 85 TSRITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKL-------------TTLYLPGNFFTGNIP 151 (409)
Q Consensus 85 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L-------------~~L~L~~n~~~~~~p 151 (409)
..++++++++++.+ |.+|++++++++|++|++++|.+.|.+|..++++++| ++|++++|.+++ +|
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp 87 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LP 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CC
T ss_pred cccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CC
Confidence 35677777777777 6777777777777777777777777777777666543 555555555552 23
Q ss_pred hhc-----------------cCCCCCCEEeccCCcCCCCCchhhcCCCCCCeEEeecCcCCCCCCCCCCCCCcCEEeCCC
Q 038636 152 VGI-----------------TRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTALRLSHNAFSGKIPSLTGAWQLHTLDLDS 214 (409)
Q Consensus 152 ~~l-----------------~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~ 214 (409)
... ..+++|++|++++|.+++ +|. -.++|++|++++|.+++ +|.+..+++|++|++++
T Consensus 88 ~~~~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~-l~~---~~~~L~~L~L~~n~l~~-lp~~~~l~~L~~L~l~~ 162 (454)
T 1jl5_A 88 ELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKA-LSD---LPPLLEYLGVSNNQLEK-LPELQNSSFLKIIDVDN 162 (454)
T ss_dssp SCCTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CCS---CCTTCCEEECCSSCCSS-CCCCTTCTTCCEEECCS
T ss_pred CCcCCCCEEEccCCcCCccccccCCCcEEECCCCccCc-ccC---CCCCCCEEECcCCCCCC-CcccCCCCCCCEEECCC
Confidence 210 012445555555555543 121 11578888888888875 66788888888888888
Q ss_pred CCCCCCCCCCCCCCcEEEeecccCCCCCcccCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCCCCCC
Q 038636 215 NQLYGNLPKFPTSLRTLSLSHNLLSGHLSSLRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLS 294 (409)
Q Consensus 215 n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 294 (409)
|++++ +|...++|++|++++|.+++. |.++++++|++|++++|.+++ +|.. .++|++|++++|.++.++ .+.
T Consensus 163 N~l~~-lp~~~~~L~~L~L~~n~l~~l-~~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~~lp--~~~ 234 (454)
T 1jl5_A 163 NSLKK-LPDLPPSLEFIAAGNNQLEEL-PELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILEELP--ELQ 234 (454)
T ss_dssp SCCSC-CCCCCTTCCEEECCSSCCSSC-CCCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSSCC--CCT
T ss_pred CcCcc-cCCCcccccEEECcCCcCCcC-ccccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCCccc--ccC
Confidence 88876 565557888888888888874 467788888888888887775 3322 245666666666665322 355
Q ss_pred CCCCCCEEEccCCcCC
Q 038636 295 GDTHLQELDVQGNLLR 310 (409)
Q Consensus 295 ~~~~L~~L~Ls~n~l~ 310 (409)
.+++|++|++++|+++
T Consensus 235 ~l~~L~~L~l~~N~l~ 250 (454)
T 1jl5_A 235 NLPFLTTIYADNNLLK 250 (454)
T ss_dssp TCTTCCEEECCSSCCS
T ss_pred CCCCCCEEECCCCcCC
Confidence 5566666666666555
No 47
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=1.2e-30 Score=245.75 Aligned_cols=234 Identities=19% Similarity=0.211 Sum_probs=207.1
Q ss_pred CCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEeccCCcCCCCCchhhcCCCCCCeE
Q 038636 108 NLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTAL 187 (409)
Q Consensus 108 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 187 (409)
..+++++|++++|.++ .+|..++++++|++|++++|.++ .+|..++++++|++|++++|.++ .+|..+.++++|++|
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEE
Confidence 4578999999999998 78888888999999999999998 88988999999999999999988 778888899999999
Q ss_pred EeecCcCCCCCCC-CCCCCCcCEEeCCCCCCCCCCCCCCCCCcEEEeecccCCCCCcccCCCCCCCEEEeeCCcCCCCCc
Q 038636 188 RLSHNAFSGKIPS-LTGAWQLHTLDLDSNQLYGNLPKFPTSLRTLSLSHNLLSGHLSSLRNLVNLKSLDLSSNRFTGAIS 266 (409)
Q Consensus 188 ~L~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 266 (409)
++++|.+.+.+|. +.. .. + ...+..+++|++|++++|+++ .+|
T Consensus 156 ~L~~n~~~~~~p~~~~~------~~--------------------------~---~~~~~~l~~L~~L~L~~n~l~-~lp 199 (328)
T 4fcg_A 156 SIRACPELTELPEPLAS------TD--------------------------A---SGEHQGLVNLQSLRLEWTGIR-SLP 199 (328)
T ss_dssp EEEEETTCCCCCSCSEE------EC------------------------------CCCEEESTTCCEEEEEEECCC-CCC
T ss_pred ECCCCCCccccChhHhh------cc--------------------------c---hhhhccCCCCCEEECcCCCcC-cch
Confidence 9998887776665 221 00 0 113567899999999999999 888
Q ss_pred hhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchhhhcCCCCCCEEEccCCeecccCchhHhhhcc
Q 038636 267 HEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLTSINLARNQLSGHIPKVYGAKLG 346 (409)
Q Consensus 267 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~ 346 (409)
..+..+++|++|++++|++++ .++.+..+++|++|++++|.+.+.+|..++.+++|++|+|++|++.+.+|..+..+..
T Consensus 200 ~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~ 278 (328)
T 4fcg_A 200 ASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQ 278 (328)
T ss_dssp GGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTT
T ss_pred HhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCC
Confidence 899999999999999999998 4557889999999999999999999999999999999999999999999999998876
Q ss_pred CCccEEEccCCcCcccCchhhhcCCCCCeEEcCCCcc
Q 038636 347 SSWRSLFLDHNFLWGNLPPEFSSSITRIRGSLAKNCL 383 (409)
Q Consensus 347 ~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~l~~N~l 383 (409)
|++|+|++|.+.+.+|..+.++++|+.+++..|.+
T Consensus 279 --L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 279 --LEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp --CCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred --CCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 99999999999999999999999999999998876
No 48
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=7.3e-31 Score=249.82 Aligned_cols=264 Identities=20% Similarity=0.215 Sum_probs=174.0
Q ss_pred cCCCCCCCCccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEeccCCcCCCC
Q 038636 94 DSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHNSLSGI 173 (409)
Q Consensus 94 ~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~ 173 (409)
+++.++. +|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+++..|..|+++++|++|++++|.+++.
T Consensus 39 ~~~~l~~-iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 115 (353)
T 2z80_A 39 SSGSLNS-IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL 115 (353)
T ss_dssp CSTTCSS-CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSC
T ss_pred CCCCccc-cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcC
Confidence 3455554 454443 5888999999988866666788899999999999988877777888889999999999988865
Q ss_pred CchhhcCCCCCCeEEeecCcCCCCCC--CCCCCCCcCEEeCCCCC-CCCCCCC-C--CCCCcEEEeecccCCCCCc-ccC
Q 038636 174 IPAQLSGLRSLTALRLSHNAFSGKIP--SLTGAWQLHTLDLDSNQ-LYGNLPK-F--PTSLRTLSLSHNLLSGHLS-SLR 246 (409)
Q Consensus 174 ~p~~l~~l~~L~~L~L~~n~l~~~~~--~~~~l~~L~~L~l~~n~-l~~~~~~-~--~~~L~~L~l~~n~l~~~~~-~l~ 246 (409)
.+..+.++++|++|++++|.+++..+ .+..+++|++|++++|. +.+..+. + .++|++|++++|.+++..+ .+.
T Consensus 116 ~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~ 195 (353)
T 2z80_A 116 SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLK 195 (353)
T ss_dssp CHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT
T ss_pred CHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHh
Confidence 55558888899999999988885444 27778888888888774 4433331 1 2566777777777766655 667
Q ss_pred CCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCCCCC---CCCCCCCEEEccCCcCCC----cchhhhcC
Q 038636 247 NLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTL---SGDTHLQELDVQGNLLRG----HLPINLVS 319 (409)
Q Consensus 247 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~~~~L~~L~Ls~n~l~~----~~p~~l~~ 319 (409)
.+++|++|++++|.++......+..+++|++|++++|.+++..+..+ .....++.++++++.+.+ .+|..+..
T Consensus 196 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~ 275 (353)
T 2z80_A 196 SIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQ 275 (353)
T ss_dssp TCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHT
T ss_pred ccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhc
Confidence 77777777777777654333334456777777777777766443322 234455666666665554 24555555
Q ss_pred CCCCCEEEccCCeecccCchh-HhhhccCCccEEEccCCcCcccC
Q 038636 320 LRNLTSINLARNQLSGHIPKV-YGAKLGSSWRSLFLDHNFLWGNL 363 (409)
Q Consensus 320 l~~L~~L~L~~N~l~~~~p~~-~~~~~~~~L~~L~L~~N~l~~~~ 363 (409)
+++|+.|++++|+++ .+|.. +..++. |++|++++|.+.+..
T Consensus 276 l~~L~~L~Ls~N~l~-~i~~~~~~~l~~--L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 276 ISGLLELEFSRNQLK-SVPDGIFDRLTS--LQKIWLHTNPWDCSC 317 (353)
T ss_dssp CTTCCEEECCSSCCC-CCCTTTTTTCTT--CCEEECCSSCBCCCH
T ss_pred ccCCCEEECCCCCCC-ccCHHHHhcCCC--CCEEEeeCCCccCcC
Confidence 566666666666555 33433 244433 555555555555443
No 49
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.97 E-value=6.6e-30 Score=261.24 Aligned_cols=293 Identities=22% Similarity=0.234 Sum_probs=216.6
Q ss_pred CCCCCCCCccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEeccCCcCCCCC
Q 038636 95 SSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHNSLSGII 174 (409)
Q Consensus 95 ~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~ 174 (409)
+.+++. +|+.+. +++++|+|++|.+++..+..|.++++|++|+|++|.+++..|.+|.++++|++|+|++|++++..
T Consensus 40 ~~~l~~-vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~ 116 (635)
T 4g8a_A 40 ELNFYK-IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 116 (635)
T ss_dssp TSCCSS-CCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred CCCcCc-cCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCC
Confidence 344544 454442 47999999999999777788999999999999999999776778999999999999999999877
Q ss_pred chhhcCCCCCCeEEeecCcCCCCCCC-CCCCCCcCEEeCCCCCCCCC-CCCC---CCCCcEEEeecccCCCCCc-ccC--
Q 038636 175 PAQLSGLRSLTALRLSHNAFSGKIPS-LTGAWQLHTLDLDSNQLYGN-LPKF---PTSLRTLSLSHNLLSGHLS-SLR-- 246 (409)
Q Consensus 175 p~~l~~l~~L~~L~L~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~-~~~~---~~~L~~L~l~~n~l~~~~~-~l~-- 246 (409)
+..|.++++|++|++++|++++..+. ++++++|++|++++|.+.+. .|.. .++|++|++++|.+++..+ .+.
T Consensus 117 ~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L 196 (635)
T 4g8a_A 117 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 196 (635)
T ss_dssp GGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH
T ss_pred HHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccch
Confidence 77899999999999999999976655 89999999999999999764 4422 3789999999887754322 110
Q ss_pred --------------------------------------------------------------------------------
Q 038636 247 -------------------------------------------------------------------------------- 246 (409)
Q Consensus 247 -------------------------------------------------------------------------------- 246 (409)
T Consensus 197 ~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~ 276 (635)
T 4g8a_A 197 HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALE 276 (635)
T ss_dssp HTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTG
T ss_pred hhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccc
Confidence
Q ss_pred -------------------------------------------------CCCCCCEEEeeCCcCCCCCch----------
Q 038636 247 -------------------------------------------------NLVNLKSLDLSSNRFTGAISH---------- 267 (409)
Q Consensus 247 -------------------------------------------------~l~~L~~L~l~~n~l~~~~~~---------- 267 (409)
....++.|++.+|.+.+..+.
T Consensus 277 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l 356 (635)
T 4g8a_A 277 GLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTF 356 (635)
T ss_dssp GGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEE
T ss_pred cccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhccc
Confidence 011233333333322211000
Q ss_pred ---------hhcCCCCCcEEEccCCcC-----------------------------------------------------
Q 038636 268 ---------EVLTLPQVVSIDVSVNRL----------------------------------------------------- 285 (409)
Q Consensus 268 ---------~~~~l~~L~~L~L~~n~l----------------------------------------------------- 285 (409)
....+++|+.+++++|.+
T Consensus 357 ~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~ 436 (635)
T 4g8a_A 357 TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS 436 (635)
T ss_dssp ESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTT
T ss_pred ccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccc
Confidence 011233444444444433
Q ss_pred ---------------------CccCCCCCCCCCCCCEEEccCCcCC-CcchhhhcCCCCCCEEEccCCeecccCchhHhh
Q 038636 286 ---------------------TAIEMTTLSGDTHLQELDVQGNLLR-GHLPINLVSLRNLTSINLARNQLSGHIPKVYGA 343 (409)
Q Consensus 286 ---------------------~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~ 343 (409)
.+..+..+..+++|+.|++++|.+. +..|..+..+++|++|+|++|++++..|..|..
T Consensus 437 ~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~ 516 (635)
T 4g8a_A 437 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 516 (635)
T ss_dssp SSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTT
T ss_pred cccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcC
Confidence 2222233445667788888887644 456778888999999999999999999999988
Q ss_pred hccCCccEEEccCCcCcccCchhhhcCCCCCeEEcCCCcc--CCCchhhhc
Q 038636 344 KLGSSWRSLFLDHNFLWGNLPPEFSSSITRIRGSLAKNCL--SCPETIRLC 392 (409)
Q Consensus 344 ~~~~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~l~~N~l--~~p~~l~~~ 392 (409)
+.. |++|+|++|++++..|..+..+++|++|++++|++ ..|..+..+
T Consensus 517 l~~--L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l 565 (635)
T 4g8a_A 517 LSS--LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 565 (635)
T ss_dssp CTT--CCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCC
T ss_pred CCC--CCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhh
Confidence 866 99999999999988888899999999999999999 334445443
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=4.1e-30 Score=239.72 Aligned_cols=257 Identities=20% Similarity=0.211 Sum_probs=176.3
Q ss_pred CCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCc--cCchhccCCCCCCEEeccCCcCCCCCchhhcCCCCCCeE
Q 038636 110 TELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTG--NIPVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTAL 187 (409)
Q Consensus 110 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~--~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L 187 (409)
++|++|++++|.++...+..|.++++|++|++++|.++. ..|..+..+++|++|++++|.++ .+|..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEE
Confidence 577888888888774444446788888888888887762 33566677788888888888777 456667788888888
Q ss_pred EeecCcCCCCCC--CCCCCCCcCEEeCCCCCCCCCCCCC---CCCCcEEEeecccCCC-CCc-ccCCCCCCCEEEeeCCc
Q 038636 188 RLSHNAFSGKIP--SLTGAWQLHTLDLDSNQLYGNLPKF---PTSLRTLSLSHNLLSG-HLS-SLRNLVNLKSLDLSSNR 260 (409)
Q Consensus 188 ~L~~n~l~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~~-~~~-~l~~l~~L~~L~l~~n~ 260 (409)
++++|.+++..+ .+..+++|++|++++|.+.+..+.. .++|++|++++|.+++ ..+ .+..+++|++|++++|.
T Consensus 107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence 888888776544 3777777888888877776655522 2566677777766665 233 67777777788887777
Q ss_pred CCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchhhhcCCC-CCCEEEccCCeecccCch
Q 038636 261 FTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLR-NLTSINLARNQLSGHIPK 339 (409)
Q Consensus 261 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~-~L~~L~L~~N~l~~~~p~ 339 (409)
+++..|..+..+++|++|++++|++++.....+..+++|++|++++|.+++..|..+..++ +|++|++++|.+++..+.
T Consensus 187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~ 266 (306)
T 2z66_A 187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH 266 (306)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGG
T ss_pred cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccCh
Confidence 7776677777777777777777777776555667777777777777777777777777764 777777777777654321
Q ss_pred -h-HhhhccCCccEEEccCCcCcccCchhhhc
Q 038636 340 -V-YGAKLGSSWRSLFLDHNFLWGNLPPEFSS 369 (409)
Q Consensus 340 -~-~~~~~~~~L~~L~L~~N~l~~~~p~~~~~ 369 (409)
. ...+.. .+.+.+..+.+....|..+..
T Consensus 267 ~~~~~~l~~--~~~~~~~~~~~~C~~p~~~~g 296 (306)
T 2z66_A 267 QSFLQWIKD--QRQLLVEVERMECATPSDKQG 296 (306)
T ss_dssp HHHHHHHHH--TGGGBSCGGGCBEEESGGGTT
T ss_pred HHHHHHHHh--hhhhhccccccccCCchhhCC
Confidence 1 111222 344455556666666665543
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=2.8e-30 Score=245.75 Aligned_cols=269 Identities=18% Similarity=0.155 Sum_probs=227.5
Q ss_pred CCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEeccCCcCCCCCchhhcCCCCCCeEEe
Q 038636 110 TELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTALRL 189 (409)
Q Consensus 110 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L 189 (409)
+.....+.+++.++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+++..|..+.++++|++|++
T Consensus 31 ~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (353)
T 2z80_A 31 DRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDL 107 (353)
T ss_dssp CTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEEC
Confidence 33445788888888 6777654 58999999999999665668999999999999999999888888999999999999
Q ss_pred ecCcCCCCCCC-CCCCCCcCEEeCCCCCCCCCCC-C---CCCCCcEEEeeccc-CCCCCc-ccCCCCCCCEEEeeCCcCC
Q 038636 190 SHNAFSGKIPS-LTGAWQLHTLDLDSNQLYGNLP-K---FPTSLRTLSLSHNL-LSGHLS-SLRNLVNLKSLDLSSNRFT 262 (409)
Q Consensus 190 ~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~---~~~~L~~L~l~~n~-l~~~~~-~l~~l~~L~~L~l~~n~l~ 262 (409)
++|.+++..+. +..+++|++|++++|.+.+..+ . ..++|++|++++|. +.+..+ .+..+++|++|++++|.++
T Consensus 108 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~ 187 (353)
T 2z80_A 108 SYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ 187 (353)
T ss_dssp CSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred CCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC
Confidence 99999965555 8899999999999999986544 1 23899999999994 666655 8999999999999999999
Q ss_pred CCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchhhhc---CCCCCCEEEccCCeecc----
Q 038636 263 GAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLV---SLRNLTSINLARNQLSG---- 335 (409)
Q Consensus 263 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~---~l~~L~~L~L~~N~l~~---- 335 (409)
+..|..+..+++|++|++++|.++..+...+..+++|++|++++|.+++..+..+. ..+.++.++++++.+.+
T Consensus 188 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~ 267 (353)
T 2z80_A 188 SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF 267 (353)
T ss_dssp EECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHH
T ss_pred ccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchh
Confidence 98899999999999999999999775444455689999999999999976554443 46789999999999887
Q ss_pred cCchhHhhhccCCccEEEccCCcCcccCchh-hhcCCCCCeEEcCCCccC
Q 038636 336 HIPKVYGAKLGSSWRSLFLDHNFLWGNLPPE-FSSSITRIRGSLAKNCLS 384 (409)
Q Consensus 336 ~~p~~~~~~~~~~L~~L~L~~N~l~~~~p~~-~~~~~~L~~L~l~~N~l~ 384 (409)
.+|..+..++. |++|++++|+++ .+|.. +.++++|++|++++|++.
T Consensus 268 ~l~~~l~~l~~--L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 268 QVMKLLNQISG--LLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp HHHHHHHTCTT--CCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred hhHHHHhcccC--CCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCcc
Confidence 47777877766 999999999999 67777 489999999999999993
No 52
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.97 E-value=5.9e-32 Score=253.54 Aligned_cols=238 Identities=20% Similarity=0.153 Sum_probs=157.7
Q ss_pred CCCCcEEeccCccCCccCchhccCCCCCCEEeccCCcCCCCCchhhcCCCCCCeEEeecCcCCCCCCCCCCCCCcCEEeC
Q 038636 133 LRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTALRLSHNAFSGKIPSLTGAWQLHTLDL 212 (409)
Q Consensus 133 l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l 212 (409)
+++|++|++++|.+++..|..+.++++|++|++++|.+++..+ +..+++|++|++++|.+++.. ..++|++|++
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~----~~~~L~~L~l 106 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL----VGPSIETLHA 106 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE----ECTTCCEEEC
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc----CCCCcCEEEC
Confidence 3344444444444443333444444444444444444443222 444444444444444443211 1245555666
Q ss_pred CCCCCCCCCCCCCCCCcEEEeecccCCCCCc-ccCCCCCCCEEEeeCCcCCCCCchhhc-CCCCCcEEEccCCcCCccCC
Q 038636 213 DSNQLYGNLPKFPTSLRTLSLSHNLLSGHLS-SLRNLVNLKSLDLSSNRFTGAISHEVL-TLPQVVSIDVSVNRLTAIEM 290 (409)
Q Consensus 213 ~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~ 290 (409)
++|.+++..+...++|++|++++|.+++..+ .+..+++|++|++++|.+++..+..+. .+++|++|++++|.+++.
T Consensus 107 ~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-- 184 (317)
T 3o53_A 107 ANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-- 184 (317)
T ss_dssp CSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE--
T ss_pred CCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc--
Confidence 6665555544445667777777777777666 777788888888888888877666664 678888888888888875
Q ss_pred CCCCCCCCCCEEEccCCcCCCcchhhhcCCCCCCEEEccCCeecccCchhHhhhccCCccEEEccCCcCc-ccCchhhhc
Q 038636 291 TTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLTSINLARNQLSGHIPKVYGAKLGSSWRSLFLDHNFLW-GNLPPEFSS 369 (409)
Q Consensus 291 ~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~-~~~p~~~~~ 369 (409)
+....+++|++|++++|.+++ +|..+..+++|+.|++++|+++ .+|..+..+.. |++|++++|.+. +.+|..+..
T Consensus 185 ~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~--L~~L~l~~N~~~~~~~~~~~~~ 260 (317)
T 3o53_A 185 KGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQN--LEHFDLRGNGFHCGTLRDFFSK 260 (317)
T ss_dssp ECCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTT--CCEEECTTCCCBHHHHHHHHHT
T ss_pred ccccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCC--CCEEEccCCCccCcCHHHHHhc
Confidence 333457888889998888884 4555888888999999988888 56777766655 888999998888 677888888
Q ss_pred CCCCCeEEcCCCc
Q 038636 370 SITRIRGSLAKNC 382 (409)
Q Consensus 370 ~~~L~~L~l~~N~ 382 (409)
+++|+.+++++++
T Consensus 261 ~~~L~~l~l~~~~ 273 (317)
T 3o53_A 261 NQRVQTVAKQTVK 273 (317)
T ss_dssp CHHHHHHHHHHHH
T ss_pred cccceEEECCCch
Confidence 8888888888554
No 53
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.97 E-value=4.8e-29 Score=230.09 Aligned_cols=254 Identities=22% Similarity=0.213 Sum_probs=196.7
Q ss_pred EEEEccCCCCCCCCccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEeccCC
Q 038636 89 TAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHN 168 (409)
Q Consensus 89 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n 168 (409)
+.++.++++++.. |..+ .++|++|++++|.+++..+..|..+++|++|++++|.+++..|..+.++++|++|++++|
T Consensus 14 ~~~~c~~~~l~~i-p~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAV-PVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSC-CTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccC-CcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 5667777777654 4333 468999999999998766677889999999999999988777888888999999999998
Q ss_pred c-CCCCCchhhcCCCCCCeEEeecCcCCCCCCC-CCCCCCcCEEeCCCCCCCCCCCCCCCCCcEEEeecccCCCCCc-cc
Q 038636 169 S-LSGIIPAQLSGLRSLTALRLSHNAFSGKIPS-LTGAWQLHTLDLDSNQLYGNLPKFPTSLRTLSLSHNLLSGHLS-SL 245 (409)
Q Consensus 169 ~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~-~l 245 (409)
. +....|..+..+++|++|++++|.+++..+. +..+++|++|++++|.++ +..+ .+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---------------------~~~~~~~ 149 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ---------------------ALPDDTF 149 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC---------------------CCCTTTT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc---------------------ccCHhHh
Confidence 7 7766677888888888888888888766554 666667776666666554 3333 46
Q ss_pred CCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchhhhcCCCCCCE
Q 038636 246 RNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLTS 325 (409)
Q Consensus 246 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 325 (409)
..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|+.
T Consensus 150 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 229 (285)
T 1ozn_A 150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQY 229 (285)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCE
T ss_pred ccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCE
Confidence 77888888888888888766667888889999999999988877778888889999999999999777777888999999
Q ss_pred EEccCCeecccCchhHhhhccCCccEEEccCCcCcccCchhhhc
Q 038636 326 INLARNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWGNLPPEFSS 369 (409)
Q Consensus 326 L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~ 369 (409)
|++++|.+....+... .... ++.+..+.+.+....|..+..
T Consensus 230 L~l~~N~~~c~~~~~~-~~~~--l~~~~~~~~~~~c~~p~~l~g 270 (285)
T 1ozn_A 230 LRLNDNPWVCDCRARP-LWAW--LQKFRGSSSEVPCSLPQRLAG 270 (285)
T ss_dssp EECCSSCEECSGGGHH-HHHH--HHHCCSEECCCBEEESGGGTT
T ss_pred EeccCCCccCCCCcHH-HHHH--HHhcccccCccccCCchHhCC
Confidence 9999998886554321 1122 556667778888788876643
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=5.4e-30 Score=238.85 Aligned_cols=242 Identities=22% Similarity=0.211 Sum_probs=155.8
Q ss_pred EEccCCcCCCCCcccccCCCCCcEEeccCccCCccCch-hccCCCCCCEEeccCCcCCCC--CchhhcCCCCCCeEEeec
Q 038636 115 LDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPV-GITRLKKLQTLDLSHNSLSGI--IPAQLSGLRSLTALRLSH 191 (409)
Q Consensus 115 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~-~l~~l~~L~~L~l~~n~l~~~--~p~~l~~l~~L~~L~L~~ 191 (409)
++.+++.++ .+|..+. ++|++|++++|.++ .+|. .|.++++|++|++++|.++.. .|..+..+++|++|++++
T Consensus 12 l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 12 IRCNSKGLT-SVPTGIP--SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EECCSSCCS-SCCSCCC--TTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEcCCCCcc-cCCCCCC--CCCCEEECCCCccC-ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 444444444 3444332 68999999999998 5554 478999999999999998733 367778899999999999
Q ss_pred CcCCCCCCCCCCCCCcCEEeCCCCCCCCCCC----CCCCCCcEEEeecccCCCCCc-ccCCCCCCCEEEeeCCcCCC-CC
Q 038636 192 NAFSGKIPSLTGAWQLHTLDLDSNQLYGNLP----KFPTSLRTLSLSHNLLSGHLS-SLRNLVNLKSLDLSSNRFTG-AI 265 (409)
Q Consensus 192 n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~l~~n~l~~-~~ 265 (409)
|.+....+.+..+++|++|++++|.+++..+ .-.++|++|++++|.+.+..+ .+..+++|++|++++|.+++ ..
T Consensus 88 n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 167 (306)
T 2z66_A 88 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 167 (306)
T ss_dssp CSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred CccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccc
Confidence 9988543348888889999988888775543 112556666666666555544 45555666666666665554 34
Q ss_pred chhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchhhhcCCCCCCEEEccCCeecccCchhHhhhc
Q 038636 266 SHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLTSINLARNQLSGHIPKVYGAKL 345 (409)
Q Consensus 266 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~ 345 (409)
|..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..|..+...+
T Consensus 168 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~ 247 (306)
T 2z66_A 168 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP 247 (306)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCC
T ss_pred hhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhh
Confidence 55555566666666666666555455555555666666666666554444555555666666666666555555554442
Q ss_pred cCCccEEEccCCcCcc
Q 038636 346 GSSWRSLFLDHNFLWG 361 (409)
Q Consensus 346 ~~~L~~L~L~~N~l~~ 361 (409)
++|++|++++|.+++
T Consensus 248 -~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 248 -SSLAFLNLTQNDFAC 262 (306)
T ss_dssp -TTCCEEECTTCCEEC
T ss_pred -ccCCEEEccCCCeec
Confidence 125566666665554
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=8.2e-29 Score=243.49 Aligned_cols=246 Identities=20% Similarity=0.184 Sum_probs=182.6
Q ss_pred CCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEeccCCcCCCCCchhhcCCCCCCeEEee
Q 038636 111 ELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTALRLS 190 (409)
Q Consensus 111 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~ 190 (409)
..+.++.++..++ .+|..+. +++++|+|++|.+++..|..|.++++|++|++++|.+++..|..|.++++|++|+++
T Consensus 55 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 3567788887777 5676554 688889999998887778888888899999999888888777888888888888888
Q ss_pred cCcCCCCCCC-CCCCCCcCEEeCCCCCCCCCCCCCCCCCcEEEeecccCCCCCc-ccCCCCCCCEEEeeCCc-CCCCCch
Q 038636 191 HNAFSGKIPS-LTGAWQLHTLDLDSNQLYGNLPKFPTSLRTLSLSHNLLSGHLS-SLRNLVNLKSLDLSSNR-FTGAISH 267 (409)
Q Consensus 191 ~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~l~~n~-l~~~~~~ 267 (409)
+|.+++..+. +..+++|++|++++|.+.+. .+ .+.++++|+.|++++|+ +....+.
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---------------------~~~~~~~l~~L~~L~l~~~~~l~~i~~~ 190 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESI---------------------PSYAFNRVPSLMRLDLGELKKLEYISEG 190 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEE---------------------CTTTTTTCTTCCEEECCCCTTCCEECTT
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCccee---------------------CHhHHhcCCcccEEeCCCCCCccccChh
Confidence 8888865554 77777777777777766532 22 45666777777777743 3333333
Q ss_pred hhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchhhhcCCCCCCEEEccCCeecccCchhHhhhccC
Q 038636 268 EVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLTSINLARNQLSGHIPKVYGAKLGS 347 (409)
Q Consensus 268 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~ 347 (409)
.+..+++|++|++++|++++. +.+..+++|++|++++|.+++..|..|.++++|+.|++++|++++..|..|..+..
T Consensus 191 ~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~- 267 (452)
T 3zyi_A 191 AFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLAS- 267 (452)
T ss_dssp TTTTCTTCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTT-
T ss_pred hccCCCCCCEEECCCCccccc--ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCC-
Confidence 566777777777777777753 45667777888888888887777777777888888888888887777777776655
Q ss_pred CccEEEccCCcCcccCchhhhcCCCCCeEEcCCCccC
Q 038636 348 SWRSLFLDHNFLWGNLPPEFSSSITRIRGSLAKNCLS 384 (409)
Q Consensus 348 ~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~l~~N~l~ 384 (409)
|++|+|++|++++..+..+..+++|+.|++++|++.
T Consensus 268 -L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 268 -LVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp -CCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred -CCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 888888888887655566677777888888888773
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=1.1e-28 Score=242.61 Aligned_cols=226 Identities=24% Similarity=0.225 Sum_probs=172.2
Q ss_pred CCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEeccCCcCCCCCchhhcCCCCCCeEEe
Q 038636 110 TELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTALRL 189 (409)
Q Consensus 110 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L 189 (409)
+++++|+|++|.+++..|..|.++++|++|+|++|.+.+..|..|.++++|++|++++|.+++..+..+..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 56777777777777666777777777777777777777666677777777777777777777655556777777777777
Q ss_pred ecCcCCCCCCC-CCCCCCcCEEeCCCCCCCCCCC-C---CCCCCcEEEeecccCCCCCcccCCCCCCCEEEeeCCcCCCC
Q 038636 190 SHNAFSGKIPS-LTGAWQLHTLDLDSNQLYGNLP-K---FPTSLRTLSLSHNLLSGHLSSLRNLVNLKSLDLSSNRFTGA 264 (409)
Q Consensus 190 ~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~---~~~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~ 264 (409)
++|.+....+. +..+++|++|++++|...+.++ . -.++|++|++++|.+++. +.+..+++|+.|++++|.+++.
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~ 233 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-PNLTPLVGLEELEMSGNHFPEI 233 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-CCCTTCTTCCEEECTTSCCSEE
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-ccccccccccEEECcCCcCccc
Confidence 77777744443 6777777777777754444443 1 226777777777777754 5677888899999999998888
Q ss_pred CchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchhhhcCCCCCCEEEccCCeeccc
Q 038636 265 ISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLTSINLARNQLSGH 336 (409)
Q Consensus 265 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 336 (409)
.|..|..+++|+.|++++|++++..+..+..+++|+.|+|++|++++..+..+..+++|+.|+|++|.+...
T Consensus 234 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd 305 (452)
T 3zyi_A 234 RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCD 305 (452)
T ss_dssp CGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECS
T ss_pred CcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCC
Confidence 888888889999999999998887777888888999999999998877777778888899999999887643
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=2.6e-28 Score=239.13 Aligned_cols=225 Identities=23% Similarity=0.223 Sum_probs=172.0
Q ss_pred CCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEeccCCcCCCCCchhhcCCCCCCeEEe
Q 038636 110 TELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTALRL 189 (409)
Q Consensus 110 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L 189 (409)
++++.|+|++|.+++..+..|.++++|++|+|++|.+.+..+..|.++++|++|++++|.+++..+..+..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 56777777777777666677777777777777777777666677777777777777777777655556777777777777
Q ss_pred ecCcCCCCCCC-CCCCCCcCEEeCCCCCCCCCCCC----CCCCCcEEEeecccCCCCCcccCCCCCCCEEEeeCCcCCCC
Q 038636 190 SHNAFSGKIPS-LTGAWQLHTLDLDSNQLYGNLPK----FPTSLRTLSLSHNLLSGHLSSLRNLVNLKSLDLSSNRFTGA 264 (409)
Q Consensus 190 ~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~----~~~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~ 264 (409)
++|.+....+. +..+++|++|++++|...+.++. -.++|++|++++|.++.. |.+..+++|+.|++++|.+++.
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~ 222 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI-PNLTPLIKLDELDLSGNHLSAI 222 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC-CCCTTCSSCCEEECTTSCCCEE
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc-cccCCCcccCEEECCCCccCcc
Confidence 77777754443 77777777777777554444431 126777777777777643 4677888888888888888888
Q ss_pred CchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchhhhcCCCCCCEEEccCCeecc
Q 038636 265 ISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLTSINLARNQLSG 335 (409)
Q Consensus 265 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 335 (409)
.|..|..+++|+.|++++|++++..+..+..+++|++|+|++|++++..+..+..+++|+.|+|++|.+..
T Consensus 223 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 223 RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred ChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence 88888888888888888888888777788888888888888888887777777888888888888888764
No 58
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.96 E-value=7.2e-28 Score=243.89 Aligned_cols=266 Identities=27% Similarity=0.325 Sum_probs=223.2
Q ss_pred CcEEEEEccCCCCCCCCccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEec
Q 038636 86 SRITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDL 165 (409)
Q Consensus 86 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l 165 (409)
..++.|+++++.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|.++ .+|. .+++|++|++
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEEC
Confidence 35889999999998 5676665 89999999999998 5665 6789999999999998 6776 7799999999
Q ss_pred cCCcCCCCCchhhcCCCCCCeEEeecCcCCCCCCCCCCCCCcCEEeCCCCCCCCCCCCCCCCCcEEEeecccCCCCCccc
Q 038636 166 SHNSLSGIIPAQLSGLRSLTALRLSHNAFSGKIPSLTGAWQLHTLDLDSNQLYGNLPKFPTSLRTLSLSHNLLSGHLSSL 245 (409)
Q Consensus 166 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~l 245 (409)
++|.+++ +|. .+++|+.|++++|.+++ +|. .+++|++|++++|.+++ +|..+++|+.|++++|.+++..
T Consensus 109 s~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~--~l~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~~l~--- 177 (622)
T 3g06_A 109 FSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPV--LPPGLQELSVSDNQLAS-LPALPSELCKLWAYNNQLTSLP--- 177 (622)
T ss_dssp CSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCC---
T ss_pred cCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCC--CCCCCCEEECcCCcCCC-cCCccCCCCEEECCCCCCCCCc---
Confidence 9999986 454 67899999999999985 554 24899999999999986 4556689999999999999754
Q ss_pred CCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchhhhcCCCCCCE
Q 038636 246 RNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLTS 325 (409)
Q Consensus 246 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 325 (409)
..+++|+.|++++|.+++ +|. .+++|+.|++++|.++.++ . .+++|+.|++++|.+++ +| ..+++|+.
T Consensus 178 ~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l~-~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~ 245 (622)
T 3g06_A 178 MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTSLP-A---LPSGLKELIVSGNRLTS-LP---VLPSELKE 245 (622)
T ss_dssp CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCC-C---CCTTCCEEECCSSCCSC-CC---CCCTTCCE
T ss_pred ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccccC-C---CCCCCCEEEccCCccCc-CC---CCCCcCcE
Confidence 557899999999999985 443 3589999999999999743 2 35799999999999995 66 46689999
Q ss_pred EEccCCeecccCchhHhhhccCCccEEEccCCcCcccCchhhhcCCCCCeEEcCCCcc--CCCchhhhc
Q 038636 326 INLARNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWGNLPPEFSSSITRIRGSLAKNCL--SCPETIRLC 392 (409)
Q Consensus 326 L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~l~~N~l--~~p~~l~~~ 392 (409)
|++++|+++ .+|. .. ++|++|+|++|+++ .+|..+.++++|+.|++++|++ ..|..+..+
T Consensus 246 L~Ls~N~L~-~lp~---~~--~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 246 LMVSGNRLT-SLPM---LP--SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp EECCSSCCS-CCCC---CC--TTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred EECCCCCCC-cCCc---cc--ccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 999999999 5665 23 34999999999999 8899999999999999999999 556655543
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=1.5e-28 Score=240.82 Aligned_cols=247 Identities=21% Similarity=0.218 Sum_probs=176.2
Q ss_pred CCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEeccCCcCCCCCchhhcCCCCCCeEEee
Q 038636 111 ELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTALRLS 190 (409)
Q Consensus 111 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~ 190 (409)
..+.++.++..++ .+|..+. +++++|+|++|.+.+..+..|.++++|++|++++|.+++..+..|.++++|++|+++
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 4567888888887 6777664 689999999999997777889999999999999999988777889999999999999
Q ss_pred cCcCCCCCCC-CCCCCCcCEEeCCCCCCCCCCCCCCCCCcEEEeecccCCCCCcccCCCCCCCEEEeeCCc-CCCCCchh
Q 038636 191 HNAFSGKIPS-LTGAWQLHTLDLDSNQLYGNLPKFPTSLRTLSLSHNLLSGHLSSLRNLVNLKSLDLSSNR-FTGAISHE 268 (409)
Q Consensus 191 ~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~ 268 (409)
+|.+++..+. +..+++|++|++++|.+....+. .+..+++|++|++++|+ +....+..
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~--------------------~~~~l~~L~~L~l~~~~~l~~i~~~~ 180 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSY--------------------AFNRIPSLRRLDLGELKRLSYISEGA 180 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTT--------------------TTTTCTTCCEEECCCCTTCCEECTTT
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHH--------------------HhhhCcccCEeCCCCCCCcceeCcch
Confidence 9998865554 77788888888887776543221 45556666666666643 33223335
Q ss_pred hcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchhhhcCCCCCCEEEccCCeecccCchhHhhhccCC
Q 038636 269 VLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLTSINLARNQLSGHIPKVYGAKLGSS 348 (409)
Q Consensus 269 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~ 348 (409)
|..+++|++|++++|+++.+ +.+..+++|++|++++|.+++..|..|.++++|+.|+|++|++++..+..|..+..
T Consensus 181 ~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-- 256 (440)
T 3zyj_A 181 FEGLSNLRYLNLAMCNLREI--PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQS-- 256 (440)
T ss_dssp TTTCSSCCEEECTTSCCSSC--CCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTT--
T ss_pred hhcccccCeecCCCCcCccc--cccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCC--
Confidence 66666666777766666642 34566667777777777777666666777777777777777777666666666644
Q ss_pred ccEEEccCCcCcccCchhhhcCCCCCeEEcCCCccC
Q 038636 349 WRSLFLDHNFLWGNLPPEFSSSITRIRGSLAKNCLS 384 (409)
Q Consensus 349 L~~L~L~~N~l~~~~p~~~~~~~~L~~L~l~~N~l~ 384 (409)
|++|+|++|++++..+..+..+++|+.|++++|+|.
T Consensus 257 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 257 LVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 777777777776555555666677777777777763
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=3.7e-29 Score=230.86 Aligned_cols=238 Identities=22% Similarity=0.224 Sum_probs=189.4
Q ss_pred CCcEEEEEccCCCCCCCCccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCcc-CCccCchhccCCCCCCEE
Q 038636 85 TSRITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNF-FTGNIPVGITRLKKLQTL 163 (409)
Q Consensus 85 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-~~~~~p~~l~~l~~L~~L 163 (409)
..++++|+++++.+++..+..|.++++|++|++++|.+++..|..+.++++|++|++++|. +....|..+..+++|++|
T Consensus 31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 5689999999999999887889999999999999999998888999999999999999997 776668889999999999
Q ss_pred eccCCcCCCCCchhhcCCCCCCeEEeecCcCCCCCCC-CCCCCCcCEEeCCCCCCCCCCCCCCCCCcEEEeecccCCCCC
Q 038636 164 DLSHNSLSGIIPAQLSGLRSLTALRLSHNAFSGKIPS-LTGAWQLHTLDLDSNQLYGNLPKFPTSLRTLSLSHNLLSGHL 242 (409)
Q Consensus 164 ~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~ 242 (409)
++++|.+++..|..+..+++|++|++++|.+++..+. +..+++|++|++++|.+++..+.
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------------------- 171 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER------------------- 171 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT-------------------
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHH-------------------
Confidence 9999999988888999999999999999999866655 77788888888887766533221
Q ss_pred cccCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchhhhcCCCC
Q 038636 243 SSLRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRN 322 (409)
Q Consensus 243 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~ 322 (409)
.+..+++|+.|++++|.+++..|..+..+++|+.|++++|++++.++..+..+++|++|++++|.+....+.. .-...
T Consensus 172 -~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~ 249 (285)
T 1ozn_A 172 -AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAW 249 (285)
T ss_dssp -TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHH
T ss_pred -HhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHH
Confidence 4566777777778777777777777777788888888888877755555677778888888888777543321 00112
Q ss_pred CCEEEccCCeecccCchhHhh
Q 038636 323 LTSINLARNQLSGHIPKVYGA 343 (409)
Q Consensus 323 L~~L~L~~N~l~~~~p~~~~~ 343 (409)
++.+..+.+.+.+..|..+..
T Consensus 250 l~~~~~~~~~~~c~~p~~l~g 270 (285)
T 1ozn_A 250 LQKFRGSSSEVPCSLPQRLAG 270 (285)
T ss_dssp HHHCCSEECCCBEEESGGGTT
T ss_pred HHhcccccCccccCCchHhCC
Confidence 334446677888888877654
No 61
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=5.5e-31 Score=246.36 Aligned_cols=220 Identities=22% Similarity=0.242 Sum_probs=109.4
Q ss_pred CCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccC-CccCchhcc-------CCCCCCEEeccCCcCCCCCchhh
Q 038636 107 GNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFF-TGNIPVGIT-------RLKKLQTLDLSHNSLSGIIPAQL 178 (409)
Q Consensus 107 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~-~~~~p~~l~-------~l~~L~~L~l~~n~l~~~~p~~l 178 (409)
+..++|++|++++|.+ .+|..+... |++|++++|.+ .+.+|..+. ++++|++|++++|.+++.+|..+
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 4445566666666666 455544433 66666666666 334555444 56666666666666666666654
Q ss_pred --cCCCCCCeEEeecCcCCCCCCC-CCCC-----CCcCEEeCCCCCCCCCCCC-C--CCCCcEEEeecccCCCC---Ccc
Q 038636 179 --SGLRSLTALRLSHNAFSGKIPS-LTGA-----WQLHTLDLDSNQLYGNLPK-F--PTSLRTLSLSHNLLSGH---LSS 244 (409)
Q Consensus 179 --~~l~~L~~L~L~~n~l~~~~~~-~~~l-----~~L~~L~l~~n~l~~~~~~-~--~~~L~~L~l~~n~l~~~---~~~ 244 (409)
..+++|++|++++|.+++. |. +..+ ++|++|++++|++.+..+. + .++|++|++++|.+.+. ++.
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence 6666666666666666655 33 4433 5666666666655544321 1 12333333333333222 111
Q ss_pred --cCCCCCCCEEEeeCCcCCC--CCc-hhhcCCCCCcEEEccCCcCCccCC-CCCCCCCCCCEEEccCCcCCCcchhhhc
Q 038636 245 --LRNLVNLKSLDLSSNRFTG--AIS-HEVLTLPQVVSIDVSVNRLTAIEM-TTLSGDTHLQELDVQGNLLRGHLPINLV 318 (409)
Q Consensus 245 --l~~l~~L~~L~l~~n~l~~--~~~-~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~p~~l~ 318 (409)
+..+++|++|++++|++++ .++ ..+..+++|++|++++|++++..+ +.+..+++|++|++++|.++ .+|..+.
T Consensus 195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~ 273 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP 273 (312)
T ss_dssp SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC
T ss_pred HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc
Confidence 2445555555555555542 111 222344555555555555554321 22333444444444444444 3343333
Q ss_pred CCCCCCEEEccCCeec
Q 038636 319 SLRNLTSINLARNQLS 334 (409)
Q Consensus 319 ~l~~L~~L~L~~N~l~ 334 (409)
++|++|++++|+++
T Consensus 274 --~~L~~L~Ls~N~l~ 287 (312)
T 1wwl_A 274 --AKLSVLDLSYNRLD 287 (312)
T ss_dssp --SEEEEEECCSSCCC
T ss_pred --CCceEEECCCCCCC
Confidence 34444444444444
No 62
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=1.3e-29 Score=251.10 Aligned_cols=233 Identities=20% Similarity=0.165 Sum_probs=164.8
Q ss_pred CCcEEeccCccCCccCchhccCCCCCCEEeccCCcCCCCCchhhcCCCCCCeEEeecCcCCCCCCCCCCCCCcCEEeCCC
Q 038636 135 KLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTALRLSHNAFSGKIPSLTGAWQLHTLDLDS 214 (409)
Q Consensus 135 ~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~ 214 (409)
+|++|+|++|.+++..|..|+.+++|++|++++|.+++..| +..+++|++|++++|.+++..+ .++|++|++++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~~ 108 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHAAN 108 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEECCS
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEECcC
Confidence 44444444444444444444444555555555544443332 4445555555555554443221 14566666666
Q ss_pred CCCCCCCCCCCCCCcEEEeecccCCCCCc-ccCCCCCCCEEEeeCCcCCCCCchhhc-CCCCCcEEEccCCcCCccCCCC
Q 038636 215 NQLYGNLPKFPTSLRTLSLSHNLLSGHLS-SLRNLVNLKSLDLSSNRFTGAISHEVL-TLPQVVSIDVSVNRLTAIEMTT 292 (409)
Q Consensus 215 n~l~~~~~~~~~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~ 292 (409)
|.+++..+...++|+.|++++|.+++..+ .++.+++|+.|++++|.+++.+|..+. .+++|++|+|++|.+++. +.
T Consensus 109 N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~--~~ 186 (487)
T 3oja_A 109 NNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV--KG 186 (487)
T ss_dssp SCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE--EC
T ss_pred CcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc--cc
Confidence 66665555445677888888888887766 788889999999999999988888776 789999999999999875 33
Q ss_pred CCCCCCCCEEEccCCcCCCcchhhhcCCCCCCEEEccCCeecccCchhHhhhccCCccEEEccCCcCc-ccCchhhhcCC
Q 038636 293 LSGDTHLQELDVQGNLLRGHLPINLVSLRNLTSINLARNQLSGHIPKVYGAKLGSSWRSLFLDHNFLW-GNLPPEFSSSI 371 (409)
Q Consensus 293 ~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~-~~~p~~~~~~~ 371 (409)
...+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.+++ +|..+..++. |+.|++++|.+. +.+|..+..++
T Consensus 187 ~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~--L~~L~l~~N~l~c~~~~~~~~~l~ 262 (487)
T 3oja_A 187 QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQN--LEHFDLRGNGFHCGTLRDFFSKNQ 262 (487)
T ss_dssp CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTT--CCEEECTTCCBCHHHHHHHHTTCH
T ss_pred cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCC--CCEEEcCCCCCcCcchHHHHHhCC
Confidence 4468899999999999996 44458889999999999999985 6777776655 999999999988 67888888888
Q ss_pred CCCeEEcC
Q 038636 372 TRIRGSLA 379 (409)
Q Consensus 372 ~L~~L~l~ 379 (409)
.|+.++++
T Consensus 263 ~L~~l~~~ 270 (487)
T 3oja_A 263 RVQTVAKQ 270 (487)
T ss_dssp HHHHHHHH
T ss_pred CCcEEecc
Confidence 88888885
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.96 E-value=3e-30 Score=241.38 Aligned_cols=244 Identities=22% Similarity=0.219 Sum_probs=208.4
Q ss_pred ccccCCCCCcEEeccCccCCccCchhccCCCCCCEEeccCCcC-CCCCchhhc-------CCCCCCeEEeecCcCCCCCC
Q 038636 128 DTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHNSL-SGIIPAQLS-------GLRSLTALRLSHNAFSGKIP 199 (409)
Q Consensus 128 ~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l-~~~~p~~l~-------~l~~L~~L~L~~n~l~~~~~ 199 (409)
+.++..++|++|++++|.+ .+|..+... |++|++++|.+ .+.+|..+. ++++|++|++++|.+++.+|
T Consensus 37 ~~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 112 (312)
T 1wwl_A 37 ELYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAP 112 (312)
T ss_dssp EEEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCC
T ss_pred EEEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhH
Confidence 3466778999999999999 788877654 99999999999 456777766 79999999999999998888
Q ss_pred C-C--CCCCCcCEEeCCCCCCCCCCCC----C----CCCCcEEEeecccCCCCCc-ccCCCCCCCEEEeeCCcCCCC--C
Q 038636 200 S-L--TGAWQLHTLDLDSNQLYGNLPK----F----PTSLRTLSLSHNLLSGHLS-SLRNLVNLKSLDLSSNRFTGA--I 265 (409)
Q Consensus 200 ~-~--~~l~~L~~L~l~~n~l~~~~~~----~----~~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~l~~n~l~~~--~ 265 (409)
. + ..+++|++|++++|.+++. |. + .++|++|++++|.+++..+ .++.+++|++|++++|++.+. .
T Consensus 113 ~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 191 (312)
T 1wwl_A 113 PPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL 191 (312)
T ss_dssp CCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHH
T ss_pred HHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHH
Confidence 7 4 8999999999999999987 41 1 2799999999999999887 899999999999999998865 3
Q ss_pred chhh--cCCCCCcEEEccCCcCCccC---CCCCCCCCCCCEEEccCCcCCCcch-hhhcCCCCCCEEEccCCeecccCch
Q 038636 266 SHEV--LTLPQVVSIDVSVNRLTAIE---MTTLSGDTHLQELDVQGNLLRGHLP-INLVSLRNLTSINLARNQLSGHIPK 339 (409)
Q Consensus 266 ~~~~--~~l~~L~~L~L~~n~l~~~~---~~~~~~~~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~N~l~~~~p~ 339 (409)
+..+ ..+++|++|++++|++++.. ...+..+++|++|++++|.+++..| ..+..+++|++|++++|+++ .+|.
T Consensus 192 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~ 270 (312)
T 1wwl_A 192 ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPK 270 (312)
T ss_dssp HHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCS
T ss_pred HHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhh
Confidence 4444 78999999999999998422 1233577899999999999998775 45667899999999999999 7888
Q ss_pred hHhhhccCCccEEEccCCcCcccCchhhhcCCCCCeEEcCCCcc
Q 038636 340 VYGAKLGSSWRSLFLDHNFLWGNLPPEFSSSITRIRGSLAKNCL 383 (409)
Q Consensus 340 ~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~l~~N~l 383 (409)
.+. .. |++|++++|++++. |. +..+++|++|++++|++
T Consensus 271 ~~~--~~--L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 271 GLP--AK--LSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPF 308 (312)
T ss_dssp SCC--SE--EEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTT
T ss_pred hcc--CC--ceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCC
Confidence 765 34 99999999999965 76 89999999999999988
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=1e-29 Score=238.24 Aligned_cols=264 Identities=19% Similarity=0.185 Sum_probs=216.8
Q ss_pred cEEEEEccCCCCCCCCccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEecc
Q 038636 87 RITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLS 166 (409)
Q Consensus 87 ~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~ 166 (409)
+++..+++.+.+...+...+..+++|++|++++|.+++..|..|.++++|++|++++|.+++..| +..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 45555666666655555556778899999999999998888889999999999999999986554 8899999999999
Q ss_pred CCcCCCCCchhhcCCCCCCeEEeecCcCCCCCCCCCCCCCcCEEeCCCCCCCCCCC-CC--CCCCcEEEeecccCCCCCc
Q 038636 167 HNSLSGIIPAQLSGLRSLTALRLSHNAFSGKIPSLTGAWQLHTLDLDSNQLYGNLP-KF--PTSLRTLSLSHNLLSGHLS 243 (409)
Q Consensus 167 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~--~~~L~~L~l~~n~l~~~~~ 243 (409)
+|.+++. ...++|++|++++|.+++..+. .+++|++|++++|.+++..+ .+ .++|++|++++|.+++..+
T Consensus 89 ~n~l~~l-----~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 161 (317)
T 3o53_A 89 NNYVQEL-----LVGPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161 (317)
T ss_dssp SSEEEEE-----EECTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG
T ss_pred CCccccc-----cCCCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH
Confidence 9998743 2448999999999998865544 35789999999999988766 22 3889999999999998766
Q ss_pred -cc-CCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchhhhcCCC
Q 038636 244 -SL-RNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLR 321 (409)
Q Consensus 244 -~l-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~ 321 (409)
.+ ..+++|++|++++|.+++. + ....+++|++|++++|++++.+ +.+..+++|++|++++|.++ .+|..+..++
T Consensus 162 ~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l~-~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~ 237 (317)
T 3o53_A 162 AELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLV-LIEKALRFSQ 237 (317)
T ss_dssp GGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCC-EECTTCCCCT
T ss_pred HHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcch-hhhcccCcccEEECcCCccc-chhhHhhcCC
Confidence 44 4789999999999999865 3 3345899999999999999854 45888999999999999999 6788899999
Q ss_pred CCCEEEccCCeec-ccCchhHhhhccCCccEEEccC-CcCcccCch
Q 038636 322 NLTSINLARNQLS-GHIPKVYGAKLGSSWRSLFLDH-NFLWGNLPP 365 (409)
Q Consensus 322 ~L~~L~L~~N~l~-~~~p~~~~~~~~~~L~~L~L~~-N~l~~~~p~ 365 (409)
+|+.|++++|.+. +.+|..+...+. |+.+++++ +.+.|..|.
T Consensus 238 ~L~~L~l~~N~~~~~~~~~~~~~~~~--L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 238 NLEHFDLRGNGFHCGTLRDFFSKNQR--VQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp TCCEEECTTCCCBHHHHHHHHHTCHH--HHHHHHHHHHHHHSSSSC
T ss_pred CCCEEEccCCCccCcCHHHHHhcccc--ceEEECCCchhccCCchh
Confidence 9999999999998 788888888876 99999984 456665554
No 65
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.95 E-value=1.6e-30 Score=256.17 Aligned_cols=299 Identities=21% Similarity=0.212 Sum_probs=233.7
Q ss_pred CCcEEEEEccCCCCCCCCcccc-CCCC----CCcEEEccCCcCCC----CCcccccCCCCCcEEeccCccCCccCchhcc
Q 038636 85 TSRITAIYLDSSGYDGFLTPSI-GNLT----ELTTLDLSRNNFRG----PIPDTITDLRKLTTLYLPGNFFTGNIPVGIT 155 (409)
Q Consensus 85 ~~~v~~L~L~~~~l~~~~~~~l-~~l~----~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~ 155 (409)
..++++|++++|.+.+..+..+ ..++ +|++|++++|.++. .++..+..+++|++|++++|.+.+..+..+.
T Consensus 55 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 134 (461)
T 1z7x_W 55 NPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLC 134 (461)
T ss_dssp CTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHH
T ss_pred CCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHH
Confidence 3678999999998876433333 2344 69999999999874 4578889999999999999998755444332
Q ss_pred -----CCCCCCEEeccCCcCCCCC----chhhcCCCCCCeEEeecCcCCCCCCC-CC-----CCCCcCEEeCCCCCCCCC
Q 038636 156 -----RLKKLQTLDLSHNSLSGII----PAQLSGLRSLTALRLSHNAFSGKIPS-LT-----GAWQLHTLDLDSNQLYGN 220 (409)
Q Consensus 156 -----~l~~L~~L~l~~n~l~~~~----p~~l~~l~~L~~L~L~~n~l~~~~~~-~~-----~l~~L~~L~l~~n~l~~~ 220 (409)
..++|++|++++|.+++.. +..+..+++|++|++++|.+.+..+. +. ..++|++|++++|.+++.
T Consensus 135 ~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 214 (461)
T 1z7x_W 135 EGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSD 214 (461)
T ss_dssp HHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTT
T ss_pred HHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHH
Confidence 3568999999999888643 55667789999999999987654332 22 356899999999998864
Q ss_pred ----CCC---CCCCCcEEEeecccCCCCC-----c-ccCCCCCCCEEEeeCCcCCCC----CchhhcCCCCCcEEEccCC
Q 038636 221 ----LPK---FPTSLRTLSLSHNLLSGHL-----S-SLRNLVNLKSLDLSSNRFTGA----ISHEVLTLPQVVSIDVSVN 283 (409)
Q Consensus 221 ----~~~---~~~~L~~L~l~~n~l~~~~-----~-~l~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n 283 (409)
++. ..++|++|++++|.+++.. + .+..+++|++|++++|.+++. ++..+..+++|++|++++|
T Consensus 215 ~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 294 (461)
T 1z7x_W 215 NCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN 294 (461)
T ss_dssp HHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC
T ss_pred HHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC
Confidence 232 2378999999999887642 2 334688999999999999864 5777778999999999999
Q ss_pred cCCccCCCCC-----CCCCCCCEEEccCCcCCCc----chhhhcCCCCCCEEEccCCeecccCchhHhhhc---cCCccE
Q 038636 284 RLTAIEMTTL-----SGDTHLQELDVQGNLLRGH----LPINLVSLRNLTSINLARNQLSGHIPKVYGAKL---GSSWRS 351 (409)
Q Consensus 284 ~l~~~~~~~~-----~~~~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~---~~~L~~ 351 (409)
.+++..+..+ ...++|++|++++|.+++. ++..+..+++|+.|++++|++++..+..+.... .++|++
T Consensus 295 ~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~ 374 (461)
T 1z7x_W 295 ELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRV 374 (461)
T ss_dssp CCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCE
T ss_pred CCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEE
Confidence 9876433322 2346999999999999966 577788889999999999999988777776521 135999
Q ss_pred EEccCCcCcc----cCchhhhcCCCCCeEEcCCCcc
Q 038636 352 LFLDHNFLWG----NLPPEFSSSITRIRGSLAKNCL 383 (409)
Q Consensus 352 L~L~~N~l~~----~~p~~~~~~~~L~~L~l~~N~l 383 (409)
|++++|.+++ .+|..+..+++|++|++++|++
T Consensus 375 L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 375 LWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410 (461)
T ss_dssp EECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSC
T ss_pred EECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCC
Confidence 9999999997 7899999999999999999998
No 66
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.95 E-value=6.6e-30 Score=251.72 Aligned_cols=155 Identities=18% Similarity=0.099 Sum_probs=69.5
Q ss_pred CCcEEEeecccCCCC----Cc-ccCCCCCCCEEEeeCCcCCCCC-----chhhcCCCCCcEEEccCCcCCccC----CCC
Q 038636 227 SLRTLSLSHNLLSGH----LS-SLRNLVNLKSLDLSSNRFTGAI-----SHEVLTLPQVVSIDVSVNRLTAIE----MTT 292 (409)
Q Consensus 227 ~L~~L~l~~n~l~~~----~~-~l~~l~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~----~~~ 292 (409)
+|++|++++|.+++. ++ .+..+++|++|++++|.+++.. +..+..+++|++|++++|.+++.. +..
T Consensus 200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 279 (461)
T 1z7x_W 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV 279 (461)
T ss_dssp CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH
Confidence 455555555544432 12 3334445555555555444221 111123445555555555544321 112
Q ss_pred CCCCCCCCEEEccCCcCCCcchhhhcC-----CCCCCEEEccCCeeccc----CchhHhhhccCCccEEEccCCcCcccC
Q 038636 293 LSGDTHLQELDVQGNLLRGHLPINLVS-----LRNLTSINLARNQLSGH----IPKVYGAKLGSSWRSLFLDHNFLWGNL 363 (409)
Q Consensus 293 ~~~~~~L~~L~Ls~n~l~~~~p~~l~~-----l~~L~~L~L~~N~l~~~----~p~~~~~~~~~~L~~L~L~~N~l~~~~ 363 (409)
+..+++|++|++++|.+++..+..+.. .++|+.|++++|.+++. ++..+...+. |++|++++|.+++..
T Consensus 280 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~--L~~L~Ls~n~i~~~~ 357 (461)
T 1z7x_W 280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRF--LLELQISNNRLEDAG 357 (461)
T ss_dssp HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSS--CCEEECCSSBCHHHH
T ss_pred HhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCC--ccEEEccCCcccccc
Confidence 233445555555555554333322222 13555555555555543 2333333333 666666666555544
Q ss_pred chhhhc-----CCCCCeEEcCCCcc
Q 038636 364 PPEFSS-----SITRIRGSLAKNCL 383 (409)
Q Consensus 364 p~~~~~-----~~~L~~L~l~~N~l 383 (409)
+..+.. .++|++|++++|.+
T Consensus 358 ~~~l~~~l~~~~~~L~~L~L~~n~i 382 (461)
T 1z7x_W 358 VRELCQGLGQPGSVLRVLWLADCDV 382 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHHHHcCCCCceEEEECCCCCC
Confidence 443332 34566666666655
No 67
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=1.6e-27 Score=236.17 Aligned_cols=217 Identities=24% Similarity=0.246 Sum_probs=192.7
Q ss_pred CCCCCCEEeccCCcCCCCCchhhcCCCCCCeEEeecCcCCCCCCCCCCCCCcCEEeCCCCCCCCCCCCCCCCCcEEEeec
Q 038636 156 RLKKLQTLDLSHNSLSGIIPAQLSGLRSLTALRLSHNAFSGKIPSLTGAWQLHTLDLDSNQLYGNLPKFPTSLRTLSLSH 235 (409)
Q Consensus 156 ~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~ 235 (409)
.+++|++|++++|.+++..|..|..+++|++|+|++|.+++.+| +..+++|++|++++|.+++..+. ++|+.|++++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~--~~L~~L~L~~ 108 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVG--PSIETLHAAN 108 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEEC--TTCCEEECCS
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCC--CCcCEEECcC
Confidence 34489999999999999888999999999999999999987666 89999999999999998865443 7999999999
Q ss_pred ccCCCCCcccCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCCCCCC-CCCCCCEEEccCCcCCCcch
Q 038636 236 NLLSGHLSSLRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLS-GDTHLQELDVQGNLLRGHLP 314 (409)
Q Consensus 236 n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~p 314 (409)
|.+++..+ ..+++|+.|++++|.+++..|..++.+++|++|++++|.+++..+..+. .+++|++|+|++|.+++. |
T Consensus 109 N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~ 185 (487)
T 3oja_A 109 NNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K 185 (487)
T ss_dssp SCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E
T ss_pred CcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-c
Confidence 99998766 3468899999999999999899999999999999999999997777765 789999999999999966 3
Q ss_pred hhhcCCCCCCEEEccCCeecccCchhHhhhccCCccEEEccCCcCcccCchhhhcCCCCCeEEcCCCcc
Q 038636 315 INLVSLRNLTSINLARNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWGNLPPEFSSSITRIRGSLAKNCL 383 (409)
Q Consensus 315 ~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~l~~N~l 383 (409)
. ...+++|+.|+|++|.+++..| .+..+.. |+.|+|++|.+++ +|..+..+++|+.|++++|++
T Consensus 186 ~-~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~--L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 186 G-QVVFAKLKTLDLSSNKLAFMGP-EFQSAAG--VTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp C-CCCCTTCCEEECCSSCCCEECG-GGGGGTT--CSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCB
T ss_pred c-cccCCCCCEEECCCCCCCCCCH-hHcCCCC--ccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCC
Confidence 2 4468999999999999997555 4777766 9999999999995 888899999999999999998
No 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=6.5e-26 Score=229.60 Aligned_cols=250 Identities=28% Similarity=0.304 Sum_probs=211.8
Q ss_pred CCcEEEEEccCCCCCCCCccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEe
Q 038636 85 TSRITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLD 164 (409)
Q Consensus 85 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~ 164 (409)
..+++.|++++|.++. +|. .+++|++|+|++|.++ .+|. .+++|++|++++|.++ .+|. .+++|++|+
T Consensus 60 ~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~l~~---~l~~L~~L~ 127 (622)
T 3g06_A 60 PAHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLT-HLPA---LPSGLCKLW 127 (622)
T ss_dssp CTTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCC-CCCC---CCTTCCEEE
T ss_pred CCCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCC-CCCC---CCCCcCEEE
Confidence 3689999999999985 454 6799999999999998 4665 7899999999999999 5665 678999999
Q ss_pred ccCCcCCCCCchhhcCCCCCCeEEeecCcCCCCCCCCCCCCCcCEEeCCCCCCCCCCCCCCCCCcEEEeecccCCCCCcc
Q 038636 165 LSHNSLSGIIPAQLSGLRSLTALRLSHNAFSGKIPSLTGAWQLHTLDLDSNQLYGNLPKFPTSLRTLSLSHNLLSGHLSS 244 (409)
Q Consensus 165 l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~ 244 (409)
+++|.+++ +|.. +++|++|++++|.+++ +|. ...+|+.|++++|.+++ +|..+++|+.|++++|.+++....
T Consensus 128 L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~--~~~~L~~L~L~~N~l~~-l~~~~~~L~~L~Ls~N~l~~l~~~ 199 (622)
T 3g06_A 128 IFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA--LPSELCKLWAYNNQLTS-LPMLPSGLQELSVSDNQLASLPTL 199 (622)
T ss_dssp CCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSCCCCC
T ss_pred CCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC--ccCCCCEEECCCCCCCC-CcccCCCCcEEECCCCCCCCCCCc
Confidence 99999985 5653 4899999999999985 444 34689999999999987 556678999999999999975433
Q ss_pred cCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchhhhcCCCCCC
Q 038636 245 LRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLT 324 (409)
Q Consensus 245 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~ 324 (409)
.++|+.|++++|.++. +|. .+++|+.|++++|++++++ ..+++|+.|++++|.++ .+|. .+++|+
T Consensus 200 ---~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~ 264 (622)
T 3g06_A 200 ---PSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLT-SLPM---LPSGLL 264 (622)
T ss_dssp ---CTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-CCCC---CCTTCC
T ss_pred ---cchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCC-cCCc---ccccCc
Confidence 4789999999999984 443 3589999999999999844 45689999999999999 5675 678999
Q ss_pred EEEccCCeecccCchhHhhhccCCccEEEccCCcCcccCchhhhcCCC
Q 038636 325 SINLARNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWGNLPPEFSSSIT 372 (409)
Q Consensus 325 ~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~~~~ 372 (409)
.|+|++|+++ .+|..+..++. |+.|+|++|.+++.+|..+..++.
T Consensus 265 ~L~Ls~N~L~-~lp~~l~~l~~--L~~L~L~~N~l~~~~~~~l~~L~~ 309 (622)
T 3g06_A 265 SLSVYRNQLT-RLPESLIHLSS--ETTVNLEGNPLSERTLQALREITS 309 (622)
T ss_dssp EEECCSSCCC-SCCGGGGGSCT--TCEEECCSCCCCHHHHHHHHHHHH
T ss_pred EEeCCCCCCC-cCCHHHhhccc--cCEEEecCCCCCCcCHHHHHhccc
Confidence 9999999999 88999988866 999999999999999988776543
No 69
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=1.6e-25 Score=204.83 Aligned_cols=217 Identities=23% Similarity=0.270 Sum_probs=170.3
Q ss_pred CCCCCCCCCceeeeecCCCCCCCCCcEEEEEccCCCCCCCCccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEec
Q 038636 62 LDPCESSGGQFLGILCSIPSDNSTSRITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYL 141 (409)
Q Consensus 62 ~~~C~~~~~~w~gv~c~~~~~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 141 (409)
.+.|. |.|+.|.. ..+++.++++++.++. +|..+. +++++|++++|.+++..+..|.++++|++|++
T Consensus 2 ~~~C~-----~~~~~C~c-----~~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 68 (270)
T 2o6q_A 2 EALCK-----KDGGVCSC-----NNNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYL 68 (270)
T ss_dssp CCCBG-----GGTCSBEE-----ETTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEEC
T ss_pred CccCC-----CCCCCCEe-----CCCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEEC
Confidence 35677 58888865 3456789999999886 555453 68999999999998777778999999999999
Q ss_pred cCccCCccCchhccCCCCCCEEeccCCcCCCCCchhhcCCCCCCeEEeecCcCCCCCCC-CCCCCCcCEEeCCCCCCCCC
Q 038636 142 PGNFFTGNIPVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTALRLSHNAFSGKIPS-LTGAWQLHTLDLDSNQLYGN 220 (409)
Q Consensus 142 ~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~ 220 (409)
++|.++...+..|.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+. +..+++|++|++++|.+++
T Consensus 69 ~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~- 147 (270)
T 2o6q_A 69 NDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQS- 147 (270)
T ss_dssp CSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-
T ss_pred CCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCc-
Confidence 99999854445568899999999999999877667778889999999999988866555 6677777777777666553
Q ss_pred CCCCCCCCcEEEeecccCCCCCc-ccCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCC
Q 038636 221 LPKFPTSLRTLSLSHNLLSGHLS-SLRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHL 299 (409)
Q Consensus 221 ~~~~~~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L 299 (409)
..+ .+..+++|+.|++++|.+++..+..|..+++|++|++++|++++.+...+..+++|
T Consensus 148 --------------------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 207 (270)
T 2o6q_A 148 --------------------LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKL 207 (270)
T ss_dssp --------------------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred --------------------cCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCC
Confidence 333 46677888888888888887777778888888888888888887666667788888
Q ss_pred CEEEccCCcCCCc
Q 038636 300 QELDVQGNLLRGH 312 (409)
Q Consensus 300 ~~L~Ls~n~l~~~ 312 (409)
+.|++++|.+...
T Consensus 208 ~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 208 KMLQLQENPWDCT 220 (270)
T ss_dssp CEEECCSSCBCCS
T ss_pred CEEEecCCCeeCC
Confidence 8888888887643
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=3.1e-25 Score=203.54 Aligned_cols=218 Identities=22% Similarity=0.228 Sum_probs=114.9
Q ss_pred EEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEeccCCcCCCCCchhhcCCCCCCeEEeecCcC
Q 038636 115 LDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTALRLSHNAF 194 (409)
Q Consensus 115 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 194 (409)
.+..+..+. .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus 12 ~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 333444443 3444332 3566666666666654444666666666666666666655555566666666666666665
Q ss_pred CCCCCC-CCCCCCcCEEeCCCCCCCCCCCCCCCCCcEEEeecccCCCCCc-ccCCCCCCCEEEeeCCcCCCC-CchhhcC
Q 038636 195 SGKIPS-LTGAWQLHTLDLDSNQLYGNLPKFPTSLRTLSLSHNLLSGHLS-SLRNLVNLKSLDLSSNRFTGA-ISHEVLT 271 (409)
Q Consensus 195 ~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~l~~n~l~~~-~~~~~~~ 271 (409)
++..+. +..+++|++|++++|.+. +..+ .+..+++|++|++++|.+++. +|..+..
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~---------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~ 147 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLA---------------------SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCC---------------------CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGG
T ss_pred CccChhhhcCCccccEEECCCCCcc---------------------ccCchhcccCCCCCEEECcCCccceecCchhhcc
Confidence 544333 444444444444444333 2222 345556666666666666542 3555555
Q ss_pred CCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchhhhcCCCCCC----EEEccCCeecccCchhHhhhccC
Q 038636 272 LPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLT----SINLARNQLSGHIPKVYGAKLGS 347 (409)
Q Consensus 272 l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~----~L~L~~N~l~~~~p~~~~~~~~~ 347 (409)
+++|++|++++|++++..+ ..+..+++|+ .|++++|++++..+..+.. .
T Consensus 148 l~~L~~L~Ls~N~l~~~~~------------------------~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~-- 200 (276)
T 2z62_A 148 LTNLEHLDLSSNKIQSIYC------------------------TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-I-- 200 (276)
T ss_dssp CTTCCEEECCSSCCCEECG------------------------GGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-C--
T ss_pred CCCCCEEECCCCCCCcCCH------------------------HHhhhhhhccccceeeecCCCcccccCccccCC-C--
Confidence 5555555555555555433 3333333333 5555555555443333322 1
Q ss_pred CccEEEccCCcCcccCchhhhcCCCCCeEEcCCCcc
Q 038636 348 SWRSLFLDHNFLWGNLPPEFSSSITRIRGSLAKNCL 383 (409)
Q Consensus 348 ~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~l~~N~l 383 (409)
+|++|++++|++++..+..+.++++|+.|++++|++
T Consensus 201 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 201 RLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp CEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred cccEEECCCCceeecCHhHhcccccccEEEccCCcc
Confidence 256666666666543333445556666666666666
No 71
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.93 E-value=3.4e-26 Score=209.54 Aligned_cols=226 Identities=23% Similarity=0.219 Sum_probs=162.9
Q ss_pred CCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEeccCCcCCCCCchhhcCCCCCCeEEee
Q 038636 111 ELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTALRLS 190 (409)
Q Consensus 111 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~ 190 (409)
.+..+++..+.+... ..+..+++|+.|++++|.+. .++ .+..+++|++|++++|.+++. ..+..+++|++|+++
T Consensus 20 ~l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~ 93 (272)
T 3rfs_A 20 ETIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILT 93 (272)
T ss_dssp HHHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECT
T ss_pred HHHHHHhcCcccccc--cccccccceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECC
Confidence 344455555555433 23556777777777777766 333 466777777777777777652 356677777777777
Q ss_pred cCcCCCCCCC-CCCCCCcCEEeCCCCCCCCCCCCCCCCCcEEEeecccCCCCCc-ccCCCCCCCEEEeeCCcCCCCCchh
Q 038636 191 HNAFSGKIPS-LTGAWQLHTLDLDSNQLYGNLPKFPTSLRTLSLSHNLLSGHLS-SLRNLVNLKSLDLSSNRFTGAISHE 268 (409)
Q Consensus 191 ~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~ 268 (409)
+|.+++..+. +..+++|++|++++|.++ +..+ .+..+++|++|++++|.+++..+..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~---------------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 152 (272)
T 3rfs_A 94 GNQLQSLPNGVFDKLTNLKELVLVENQLQ---------------------SLPDGVFDKLTNLTYLNLAHNQLQSLPKGV 152 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECTTSCCC---------------------CCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CCccCccChhHhcCCcCCCEEECCCCcCC---------------------ccCHHHhccCCCCCEEECCCCccCccCHHH
Confidence 7777654444 556666666666655544 3444 4677788888888888888777777
Q ss_pred hcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchhhhcCCCCCCEEEccCCeecccCchhHhhhccCC
Q 038636 269 VLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLTSINLARNQLSGHIPKVYGAKLGSS 348 (409)
Q Consensus 269 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~ 348 (409)
+..+++|++|++++|++++..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+.+..| +
T Consensus 153 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~---------~ 223 (272)
T 3rfs_A 153 FDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP---------G 223 (272)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT---------T
T ss_pred hccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCc---------H
Confidence 7888888888888888888666667888889999999998888777778888899999999998876544 2
Q ss_pred ccEEEccCCcCcccCchhhhcCCC
Q 038636 349 WRSLFLDHNFLWGNLPPEFSSSIT 372 (409)
Q Consensus 349 L~~L~L~~N~l~~~~p~~~~~~~~ 372 (409)
|+.++++.|.++|.+|.+++.+..
T Consensus 224 l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 224 IRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp THHHHHHHHHTGGGBBCTTSCBCG
T ss_pred HHHHHHHHHhCCCcccCcccccCC
Confidence 778888889999988888776544
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=4.9e-25 Score=202.21 Aligned_cols=214 Identities=25% Similarity=0.259 Sum_probs=174.6
Q ss_pred CccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEeccCCcCCCCCchhhcCC
Q 038636 102 LTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHNSLSGIIPAQLSGL 181 (409)
Q Consensus 102 ~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l 181 (409)
+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..+..+
T Consensus 22 ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (276)
T 2z62_A 22 IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 99 (276)
T ss_dssp CCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred cCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCC
Confidence 444443 579999999999997777789999999999999999997777789999999999999999998888899999
Q ss_pred CCCCeEEeecCcCCCCCCC-CCCCCCcCEEeCCCCCCCCCCCCCCCCCcEEEeecccCCCCCc-ccCCCCCCCEEEeeCC
Q 038636 182 RSLTALRLSHNAFSGKIPS-LTGAWQLHTLDLDSNQLYGNLPKFPTSLRTLSLSHNLLSGHLS-SLRNLVNLKSLDLSSN 259 (409)
Q Consensus 182 ~~L~~L~L~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~l~~n 259 (409)
++|++|++++|.+.+..+. +..+++|++|++++|.+.+. ..| .+..+++|++|++++|
T Consensus 100 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--------------------~l~~~~~~l~~L~~L~Ls~N 159 (276)
T 2z62_A 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF--------------------KLPEYFSNLTNLEHLDLSSN 159 (276)
T ss_dssp TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC--------------------CCCGGGGGCTTCCEEECCSS
T ss_pred ccccEEECCCCCccccCchhcccCCCCCEEECcCCcccee--------------------cCchhhccCCCCCEEECCCC
Confidence 9999999999999876553 77777888888777766532 123 6677888999999999
Q ss_pred cCCCCCchhhcCCCCCc----EEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchhhhcCCCCCCEEEccCCeecc
Q 038636 260 RFTGAISHEVLTLPQVV----SIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLTSINLARNQLSG 335 (409)
Q Consensus 260 ~l~~~~~~~~~~l~~L~----~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 335 (409)
++++..+..+..+++|+ .|++++|.+++..+..+. ..+|++|++++|.+++..+..+..+++|+.|++++|.+.+
T Consensus 160 ~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred CCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 88877777776666666 889999999886555444 3479999999999886666667888899999999998887
Q ss_pred cCc
Q 038636 336 HIP 338 (409)
Q Consensus 336 ~~p 338 (409)
..|
T Consensus 239 ~c~ 241 (276)
T 2z62_A 239 SCP 241 (276)
T ss_dssp CTT
T ss_pred cCC
Confidence 654
No 73
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=1.8e-24 Score=199.87 Aligned_cols=204 Identities=25% Similarity=0.198 Sum_probs=156.2
Q ss_pred ccCCCCCcEEeccCccCCccCchhccCCCCCCEEeccCCcCCCCCchhhcCCCCCCeEEeecCcCCCCCCCCCCCCCcCE
Q 038636 130 ITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTALRLSHNAFSGKIPSLTGAWQLHT 209 (409)
Q Consensus 130 l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~ 209 (409)
+++++++++++++++.++ .+|..+. +++++|++++|.+++..|..+..+++|++|++++|.+++ ++....+++|++
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~ 81 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVDGTLPVLGT 81 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECCSCCTTCCE
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCCCCCCcCCE
Confidence 667788888888888887 6776654 678888888888887777778888888888888887764 333344445555
Q ss_pred EeCCCCCCCCCCCCCCCCCcEEEeecccCCCCCcccCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccC
Q 038636 210 LDLDSNQLYGNLPKFPTSLRTLSLSHNLLSGHLSSLRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIE 289 (409)
Q Consensus 210 L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 289 (409)
|++++| .++..+..+..+++|++|++++|++++..+..|..+++|++|++++|++++.+
T Consensus 82 L~Ls~N---------------------~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~ 140 (290)
T 1p9a_G 82 LDLSHN---------------------QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140 (290)
T ss_dssp EECCSS---------------------CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCC
T ss_pred EECCCC---------------------cCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccC
Confidence 555544 44433335677888999999999998877788888999999999999998877
Q ss_pred CCCCCCCCCCCEEEccCCcCCCcchhhhcCCCCCCEEEccCCeecccCchhHhhhccCCccEEEccCCcCcc
Q 038636 290 MTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLTSINLARNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWG 361 (409)
Q Consensus 290 ~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~ 361 (409)
+..+..+++|+.|++++|++++..+..+..+++|+.|+|++|+++ .+|..+..... |+.|+|++|.+..
T Consensus 141 ~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~--L~~l~L~~Np~~C 209 (290)
T 1p9a_G 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHL--LPFAFLHGNPWLC 209 (290)
T ss_dssp TTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCC--CSEEECCSCCBCC
T ss_pred hhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhccccc--CCeEEeCCCCccC
Confidence 667788888999999999988655556678888999999998888 67777766654 8888888888764
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=1.2e-23 Score=192.42 Aligned_cols=202 Identities=22% Similarity=0.255 Sum_probs=129.9
Q ss_pred CCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEeccCCcCCCCCchhhcCCCCCCeEEee
Q 038636 111 ELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTALRLS 190 (409)
Q Consensus 111 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~ 190 (409)
..++++++++.++ .+|..+. ++|++|++++|.+++..+..|.++++|++|++++|.++...+..+..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 4566777777666 4554443 456677777776664444466666667777776666664444445566666666666
Q ss_pred cCcCCCCCCC-CCCCCCcCEEeCCCCCCCCCCCCCCCCCcEEEeecccCCCCCc-ccCCCCCCCEEEeeCCcCCCCCchh
Q 038636 191 HNAFSGKIPS-LTGAWQLHTLDLDSNQLYGNLPKFPTSLRTLSLSHNLLSGHLS-SLRNLVNLKSLDLSSNRFTGAISHE 268 (409)
Q Consensus 191 ~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~ 268 (409)
+|.+.+..+. +..+++|++|++++|. +++..+ .+..+++|++|++++|.+++..+..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~---------------------l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~ 152 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQ---------------------LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGV 152 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSC---------------------CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCc---------------------cCeeCHHHhCcCcCCCEEECCCCcCCccCHhH
Confidence 6666543333 4444444444444443 333333 4567777888888888777666666
Q ss_pred hcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchhhhcCCCCCCEEEccCCeeccc
Q 038636 269 VLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLTSINLARNQLSGH 336 (409)
Q Consensus 269 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 336 (409)
+..+++|++|++++|+++++.+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+...
T Consensus 153 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 153 FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred ccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 77777788888877777776655677777777777777777755555567777777777777776544
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=1.5e-24 Score=198.61 Aligned_cols=208 Identities=22% Similarity=0.225 Sum_probs=138.0
Q ss_pred cCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEeccCCcCCCCCchhhcCCCCCC
Q 038636 106 IGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLT 185 (409)
Q Consensus 106 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~ 185 (409)
+..+++|+.|++++|.++. + ..+..+++|++|++++|.+.+ + +.++.+++|++|++++|.+++..+..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 4566777777777777663 2 346777778888888777774 3 3677777888888888877766666677778888
Q ss_pred eEEeecCcCCCCCCC-CCCCCCcCEEeCCCCCCCCCCCCCCCCCcEEEeecccCCCCCcccCCCCCCCEEEeeCCcCCCC
Q 038636 186 ALRLSHNAFSGKIPS-LTGAWQLHTLDLDSNQLYGNLPKFPTSLRTLSLSHNLLSGHLSSLRNLVNLKSLDLSSNRFTGA 264 (409)
Q Consensus 186 ~L~L~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~ 264 (409)
+|++++|.+++..+. +..+++|++|++++|.+++..+. .+..+++|+.|++++|++++.
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--------------------~~~~l~~L~~L~l~~n~l~~~ 172 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKG--------------------VFDKLTNLTELDLSYNQLQSL 172 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT--------------------TTTTCTTCCEEECCSSCCCCC
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHH--------------------HhccCccCCEEECCCCCcCcc
Confidence 888888877765554 56667777777766665533221 345556666666666666655
Q ss_pred CchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchhhhcCCCCCCEEEccCCeecccCchhHhhh
Q 038636 265 ISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLTSINLARNQLSGHIPKVYGAK 344 (409)
Q Consensus 265 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~ 344 (409)
.+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+.+. +++|+.|+++.|+++|.+|..++..
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 173 PEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred CHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCccccc
Confidence 555556666666666666666665555556666666777766666543 3356667777777777777666544
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=5.3e-24 Score=196.69 Aligned_cols=203 Identities=22% Similarity=0.275 Sum_probs=170.8
Q ss_pred ccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEeccCCcCCCCCchhhcCCCCC
Q 038636 105 SIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSL 184 (409)
Q Consensus 105 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L 184 (409)
.+++++++++++++++.++ .+|..+. +++++|++++|.+++..|..|.++++|++|++++|.+++. +.. ..+++|
T Consensus 5 ~~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L 79 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVL 79 (290)
T ss_dssp EEECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC-SCCTTC
T ss_pred cccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC-CCCCcC
Confidence 4778999999999999998 6776664 6899999999999988888999999999999999999864 333 789999
Q ss_pred CeEEeecCcCCCCCCC-CCCCCCcCEEeCCCCCCCCCCCCCCCCCcEEEeecccCCCCCc-ccCCCCCCCEEEeeCCcCC
Q 038636 185 TALRLSHNAFSGKIPS-LTGAWQLHTLDLDSNQLYGNLPKFPTSLRTLSLSHNLLSGHLS-SLRNLVNLKSLDLSSNRFT 262 (409)
Q Consensus 185 ~~L~L~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~l~~n~l~ 262 (409)
++|++++|.+. .+|. +..+++|++|++++|+++ +..+ .|..+++|++|++++|+++
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~---------------------~l~~~~~~~l~~L~~L~L~~N~l~ 137 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT---------------------SLPLGALRGLGELQELYLKGNELK 137 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCC---------------------CCCSSTTTTCTTCCEEECTTSCCC
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCc---------------------ccCHHHHcCCCCCCEEECCCCCCC
Confidence 99999999998 4454 666777777777666554 3333 5778888999999999998
Q ss_pred CCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchhhhcCCCCCCEEEccCCeecc
Q 038636 263 GAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLTSINLARNQLSG 335 (409)
Q Consensus 263 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 335 (409)
+..+..|..+++|+.|++++|++++++...+..+++|+.|++++|+++ .+|..+..+++|+.|+|++|.+..
T Consensus 138 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred ccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 777777888999999999999999877667788899999999999998 788888888899999999998864
No 77
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.92 E-value=9.7e-27 Score=219.56 Aligned_cols=263 Identities=16% Similarity=0.186 Sum_probs=186.3
Q ss_pred eeeeecCCCCCCCCCcEEEEEccCCCCCCCCccccCCC--CCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCcc
Q 038636 72 FLGILCSIPSDNSTSRITAIYLDSSGYDGFLTPSIGNL--TELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGN 149 (409)
Q Consensus 72 w~gv~c~~~~~~~~~~v~~L~L~~~~l~~~~~~~l~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~ 149 (409)
|.++.|+. ..++.++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+.+.
T Consensus 39 W~~~~~~~------~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~ 108 (336)
T 2ast_B 39 WYRLASDE------SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVS 108 (336)
T ss_dssp HHHHHTCS------TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHH
T ss_pred HHHHhcCc------hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHH
Confidence 88888752 45788999988776 4556666 8999999999999876665 66799999999999998865
Q ss_pred -CchhccCCCCCCEEeccCCcCCCCCchhhcCCCCCCeEEeecC-cCCCC-CCC-CCCCCCcCEEeCCCC-CCCCCCCCC
Q 038636 150 -IPVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTALRLSHN-AFSGK-IPS-LTGAWQLHTLDLDSN-QLYGNLPKF 224 (409)
Q Consensus 150 -~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n-~l~~~-~~~-~~~l~~L~~L~l~~n-~l~~~~~~~ 224 (409)
+|..+..+++|++|++++|.+++..+..++.+++|++|++++| .+++. ++. +..+++|++|++++| .+++..
T Consensus 109 ~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~--- 185 (336)
T 2ast_B 109 TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKH--- 185 (336)
T ss_dssp HHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHH---
T ss_pred HHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHH---
Confidence 8888899999999999999988888888888999999999988 56642 444 566677777777776 554320
Q ss_pred CCCCcEEEeecccCCCCCc-ccCCCC-CCCEEEeeCC--cCC-CCCchhhcCCCCCcEEEccCCc-CCccCCCCCCCCCC
Q 038636 225 PTSLRTLSLSHNLLSGHLS-SLRNLV-NLKSLDLSSN--RFT-GAISHEVLTLPQVVSIDVSVNR-LTAIEMTTLSGDTH 298 (409)
Q Consensus 225 ~~~L~~L~l~~n~l~~~~~-~l~~l~-~L~~L~l~~n--~l~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~ 298 (409)
.+ .+..++ +|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+..+++
T Consensus 186 -----------------~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~ 248 (336)
T 2ast_B 186 -----------------VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY 248 (336)
T ss_dssp -----------------HHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTT
T ss_pred -----------------HHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCC
Confidence 12 344556 6777777776 344 3455566667777777777777 55545556666777
Q ss_pred CCEEEccCCc-CCCcchhhhcCCCCCCEEEccCCeecccCchhHhhhccCCccEEEccCCcCcccCchhhhc
Q 038636 299 LQELDVQGNL-LRGHLPINLVSLRNLTSINLARNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWGNLPPEFSS 369 (409)
Q Consensus 299 L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~ 369 (409)
|++|++++|. +.......+.++++|+.|++++| ++...-..+. .. +..|++++|++++..|..+++
T Consensus 249 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~--l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 249 LQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK--EA--LPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp CCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH--HH--STTSEESCCCSCCTTCSSCSS
T ss_pred CCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH--hh--CcceEEecccCccccCCcccc
Confidence 7777777774 33222235677788888888887 4432222222 12 666777888888777766554
No 78
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.92 E-value=6.2e-26 Score=216.51 Aligned_cols=253 Identities=21% Similarity=0.242 Sum_probs=175.9
Q ss_pred EEccCCCCCCCCccccCCCCCCcEEEccCCcCCCCCc----ccccCCC-CCcEEeccCccCCccCchhccCC-----CCC
Q 038636 91 IYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIP----DTITDLR-KLTTLYLPGNFFTGNIPVGITRL-----KKL 160 (409)
Q Consensus 91 L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p----~~l~~l~-~L~~L~L~~n~~~~~~p~~l~~l-----~~L 160 (409)
.+++.+.++|.+|..+...++|++|++++|.+++..+ ..+.+++ +|++|++++|.+.+..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 5678888888888777777779999999999887666 6778888 89999999999887777777664 889
Q ss_pred CEEeccCCcCCCCCchhh----cCC-CCCCeEEeecCcCCCCCCC-----CCC-CCCcCEEeCCCCCCCCCCC-------
Q 038636 161 QTLDLSHNSLSGIIPAQL----SGL-RSLTALRLSHNAFSGKIPS-----LTG-AWQLHTLDLDSNQLYGNLP------- 222 (409)
Q Consensus 161 ~~L~l~~n~l~~~~p~~l----~~l-~~L~~L~L~~n~l~~~~~~-----~~~-l~~L~~L~l~~n~l~~~~~------- 222 (409)
++|++++|.+++..+..+ ..+ ++|++|++++|.+++..+. +.. .++|++|++++|.+++...
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 999999999887766644 344 7899999999988765443 233 3588888888888875332
Q ss_pred -CCCCCCcEEEeecccCCCCCc-c----cCCC-CCCCEEEeeCCcCCCC----CchhhcC-CCCCcEEEccCCcCCccCC
Q 038636 223 -KFPTSLRTLSLSHNLLSGHLS-S----LRNL-VNLKSLDLSSNRFTGA----ISHEVLT-LPQVVSIDVSVNRLTAIEM 290 (409)
Q Consensus 223 -~~~~~L~~L~l~~n~l~~~~~-~----l~~l-~~L~~L~l~~n~l~~~----~~~~~~~-l~~L~~L~L~~n~l~~~~~ 290 (409)
...++|++|++++|.+++..+ . +... ++|++|++++|.+++. ++..+.. .++|++|++++|.+++...
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 122477788888777766554 2 3334 4777777777777652 3344444 3477777777777776433
Q ss_pred C----CCCCCCCCCEEEccCCcCCCc-------chhhhcCCCCCCEEEccCCeecccCchhHhh
Q 038636 291 T----TLSGDTHLQELDVQGNLLRGH-------LPINLVSLRNLTSINLARNQLSGHIPKVYGA 343 (409)
Q Consensus 291 ~----~~~~~~~L~~L~Ls~n~l~~~-------~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~ 343 (409)
. .+..+++|++|++++|.+.+. ++..+..+++|+.|++++|++.+..+..+..
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~~~ 306 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISN 306 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHHHH
T ss_pred HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHHHH
Confidence 1 335566777777777774432 2234556667777777777777665555443
No 79
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.91 E-value=4.9e-24 Score=198.71 Aligned_cols=195 Identities=25% Similarity=0.387 Sum_probs=137.7
Q ss_pred cCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEeccCCcCCCCCchhhcCCCCCC
Q 038636 106 IGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLT 185 (409)
Q Consensus 106 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~ 185 (409)
+..+++|++|++++|.++. +| .+..+++|++|++++|.+.+ ++. +..+++|++|++++|.+++. +.+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKNV--SAIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence 4567788888888888874 44 57888888888888888874 444 78888888888888888753 3577788888
Q ss_pred eEEeecCcCCCCCCCCCCCCCcCEEeCCCCCCCCCCCCCCCCCcEEEeecccCCCCCcccCCCCCCCEEEeeCCcCCCCC
Q 038636 186 ALRLSHNAFSGKIPSLTGAWQLHTLDLDSNQLYGNLPKFPTSLRTLSLSHNLLSGHLSSLRNLVNLKSLDLSSNRFTGAI 265 (409)
Q Consensus 186 ~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~ 265 (409)
+|++++|.+++ ++.+..+++|++|++++|.+++.. .+..+++|+.|++++|.+++..
T Consensus 111 ~L~l~~n~l~~-~~~l~~l~~L~~L~l~~n~l~~~~----------------------~l~~l~~L~~L~l~~n~l~~~~ 167 (308)
T 1h6u_A 111 TLDLTSTQITD-VTPLAGLSNLQVLYLDLNQITNIS----------------------PLAGLTNLQYLSIGNAQVSDLT 167 (308)
T ss_dssp EEECTTSCCCC-CGGGTTCTTCCEEECCSSCCCCCG----------------------GGGGCTTCCEEECCSSCCCCCG
T ss_pred EEECCCCCCCC-chhhcCCCCCCEEECCCCccCcCc----------------------cccCCCCccEEEccCCcCCCCh
Confidence 88888888774 444666677777777666655332 2455667777777777776533
Q ss_pred chhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchhhhcCCCCCCEEEccCCeecc
Q 038636 266 SHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLTSINLARNQLSG 335 (409)
Q Consensus 266 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 335 (409)
+ +..+++|+.|++++|++++.. .+..+++|++|++++|.+++..| +..+++|+.|++++|++++
T Consensus 168 ~--l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 168 P--LANLSKLTTLKADDNKISDIS--PLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp G--GTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred h--hcCCCCCCEEECCCCccCcCh--hhcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 3 667777777777777776533 26667777777777777775443 6777777777777777764
No 80
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.91 E-value=2.8e-25 Score=211.90 Aligned_cols=250 Identities=22% Similarity=0.222 Sum_probs=198.3
Q ss_pred EEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCc----hhccCCC-CCCEEeccCCcCCCCCchhhcCC-----CC
Q 038636 114 TLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIP----VGITRLK-KLQTLDLSHNSLSGIIPAQLSGL-----RS 183 (409)
Q Consensus 114 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p----~~l~~l~-~L~~L~l~~n~l~~~~p~~l~~l-----~~ 183 (409)
.++++.|.+++.+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46889999999999888888889999999999997666 7788898 89999999999998878777665 99
Q ss_pred CCeEEeecCcCCCCCCC-----CCCC-CCcCEEeCCCCCCCCCCCC--------CCCCCcEEEeecccCCCCCc-----c
Q 038636 184 LTALRLSHNAFSGKIPS-----LTGA-WQLHTLDLDSNQLYGNLPK--------FPTSLRTLSLSHNLLSGHLS-----S 244 (409)
Q Consensus 184 L~~L~L~~n~l~~~~~~-----~~~l-~~L~~L~l~~n~l~~~~~~--------~~~~L~~L~l~~n~l~~~~~-----~ 244 (409)
|++|++++|.+++..+. +... ++|++|++++|.+++..+. +.++|++|++++|.+++... .
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 99999999999876654 4444 7999999999999876551 13699999999999985433 3
Q ss_pred cCCCC-CCCEEEeeCCcCCCCCchhhc----CC-CCCcEEEccCCcCCccCCC----CCCC-CCCCCEEEccCCcCCCcc
Q 038636 245 LRNLV-NLKSLDLSSNRFTGAISHEVL----TL-PQVVSIDVSVNRLTAIEMT----TLSG-DTHLQELDVQGNLLRGHL 313 (409)
Q Consensus 245 l~~l~-~L~~L~l~~n~l~~~~~~~~~----~l-~~L~~L~L~~n~l~~~~~~----~~~~-~~~L~~L~Ls~n~l~~~~ 313 (409)
+...+ +|++|++++|++++..+..+. .. ++|++|+|++|.+++.... .+.. .++|++|++++|.+++..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 44555 999999999999877765444 45 5999999999999874333 2222 469999999999999765
Q ss_pred h----hhhcCCCCCCEEEccCCeecccCch-------hHhhhccCCccEEEccCCcCcccCch
Q 038636 314 P----INLVSLRNLTSINLARNQLSGHIPK-------VYGAKLGSSWRSLFLDHNFLWGNLPP 365 (409)
Q Consensus 314 p----~~l~~l~~L~~L~L~~N~l~~~~p~-------~~~~~~~~~L~~L~L~~N~l~~~~p~ 365 (409)
+ ..+..+++|+.|++++|.+.+..+. .+.... +|++||+++|.+.+..+.
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~--~L~~LdL~~N~l~~~~~~ 302 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQ--KIILVDKNGKEIHPSHSI 302 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCC--EEEEECTTSCBCCGGGCH
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCC--ceEEEecCCCcCCCcchH
Confidence 5 3456779999999999996654443 333343 399999999999876443
No 81
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.91 E-value=5.7e-26 Score=218.64 Aligned_cols=243 Identities=17% Similarity=0.176 Sum_probs=141.6
Q ss_pred CccccCCCCCCcEEEccCCcCCCCCc----ccccCCCCCcEEeccCc---cCCccCchhc-------cCCCCCCEEeccC
Q 038636 102 LTPSIGNLTELTTLDLSRNNFRGPIP----DTITDLRKLTTLYLPGN---FFTGNIPVGI-------TRLKKLQTLDLSH 167 (409)
Q Consensus 102 ~~~~l~~l~~L~~L~L~~n~l~~~~p----~~l~~l~~L~~L~L~~n---~~~~~~p~~l-------~~l~~L~~L~l~~ 167 (409)
++..+..+++|++|+|++|.+++..+ ..+..+++|++|+|++| .+.+.+|..+ ..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 44556677888888888888775533 34667888888888875 4445566554 6778888888888
Q ss_pred CcCCC----CCchhhcCCCCCCeEEeecCcCCCCCCC-----CCCC---------CCcCEEeCCCCCCC-CCCCCCCCCC
Q 038636 168 NSLSG----IIPAQLSGLRSLTALRLSHNAFSGKIPS-----LTGA---------WQLHTLDLDSNQLY-GNLPKFPTSL 228 (409)
Q Consensus 168 n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~~~-----~~~l---------~~L~~L~l~~n~l~-~~~~~~~~~L 228 (409)
|.+++ .+|..+..+++|++|++++|.+.+..+. +..+ ++|++|++++|.++ +.++.+.
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~--- 180 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA--- 180 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH---
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHH---
Confidence 88876 3666777788888888888877533222 2222 56666666666655 2222100
Q ss_pred cEEEeecccCCCCCcccCCCCCCCEEEeeCCcCCC-----CCchhhcCCCCCcEEEccCCcCC----ccCCCCCCCCCCC
Q 038636 229 RTLSLSHNLLSGHLSSLRNLVNLKSLDLSSNRFTG-----AISHEVLTLPQVVSIDVSVNRLT----AIEMTTLSGDTHL 299 (409)
Q Consensus 229 ~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~~~~L 299 (409)
..+..+++|++|++++|+++. ..+..+..+++|++|+|++|.++ +..+..+..+++|
T Consensus 181 --------------~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L 246 (386)
T 2ca6_A 181 --------------KTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL 246 (386)
T ss_dssp --------------HHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTC
T ss_pred --------------HHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCc
Confidence 023344455555555555541 12224445555555555555553 1122234455556
Q ss_pred CEEEccCCcCCCc----chhhhc--CCCCCCEEEccCCeecc----cCchhH-hhhccCCccEEEccCCcCcccC
Q 038636 300 QELDVQGNLLRGH----LPINLV--SLRNLTSINLARNQLSG----HIPKVY-GAKLGSSWRSLFLDHNFLWGNL 363 (409)
Q Consensus 300 ~~L~Ls~n~l~~~----~p~~l~--~l~~L~~L~L~~N~l~~----~~p~~~-~~~~~~~L~~L~L~~N~l~~~~ 363 (409)
++|+|++|.+++. +|..+. .+++|+.|+|++|.+++ .+|..+ ..++. |++|++++|.+++..
T Consensus 247 ~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~--L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 247 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPD--LLFLELNGNRFSEED 319 (386)
T ss_dssp CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTT--CCEEECTTSBSCTTS
T ss_pred CEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCC--ceEEEccCCcCCcch
Confidence 6666666665543 344442 25666666666666665 355554 22333 666666666666554
No 82
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.91 E-value=5.1e-23 Score=186.05 Aligned_cols=174 Identities=20% Similarity=0.193 Sum_probs=85.8
Q ss_pred CEEeCCCCCCCCCCCCCCCCCcEEEeecccCCCCCc-ccCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCC
Q 038636 208 HTLDLDSNQLYGNLPKFPTSLRTLSLSHNLLSGHLS-SLRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLT 286 (409)
Q Consensus 208 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 286 (409)
++++++++.++.....+++.++.|++++|.+++..+ .+.++++|++|++++|.+++..+..+..+++|++|++++|+++
T Consensus 17 ~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 96 (251)
T 3m19_A 17 KEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA 96 (251)
T ss_dssp TEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred eEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccc
Confidence 344444444443222333444555555555544444 4455555555555555555544444555555555555555555
Q ss_pred ccCCCCCCCCCCCCEEEccCCcCCCcchhhhcCCCCCCEEEccCCeecccCchhHhhhccCCccEEEccCCcCcccCchh
Q 038636 287 AIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLTSINLARNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWGNLPPE 366 (409)
Q Consensus 287 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~p~~ 366 (409)
+..+..+..+++|++|++++|.+++..+..+..+++|++|+|++|++++..+..+..+.. |++|+|++|++++..+..
T Consensus 97 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~--L~~L~L~~N~l~~~~~~~ 174 (251)
T 3m19_A 97 SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN--LQTLSLSTNQLQSVPHGA 174 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT--CCEEECCSSCCSCCCTTT
T ss_pred ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC--CCEEECCCCcCCccCHHH
Confidence 444444445555555555555555444434445555555555555555444434444433 555555555555444444
Q ss_pred hhcCCCCCeEEcCCCcc
Q 038636 367 FSSSITRIRGSLAKNCL 383 (409)
Q Consensus 367 ~~~~~~L~~L~l~~N~l 383 (409)
+..+++|+.|++++|++
T Consensus 175 ~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 175 FDRLGKLQTITLFGNQF 191 (251)
T ss_dssp TTTCTTCCEEECCSCCB
T ss_pred HhCCCCCCEEEeeCCce
Confidence 45555555555555555
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.90 E-value=2.3e-25 Score=214.44 Aligned_cols=251 Identities=22% Similarity=0.223 Sum_probs=183.5
Q ss_pred CCcccccCCCCCcEEeccCccCCccCc----hhccCCCCCCEEeccCC---cCCCCCchhh-------cCCCCCCeEEee
Q 038636 125 PIPDTITDLRKLTTLYLPGNFFTGNIP----VGITRLKKLQTLDLSHN---SLSGIIPAQL-------SGLRSLTALRLS 190 (409)
Q Consensus 125 ~~p~~l~~l~~L~~L~L~~n~~~~~~p----~~l~~l~~L~~L~l~~n---~l~~~~p~~l-------~~l~~L~~L~L~ 190 (409)
.++..+..+++|++|++++|.+.+..+ ..+..+++|++|++++| .+++.+|..+ ..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 466677888899999999998886533 34678889999999885 4445566555 577888888888
Q ss_pred cCcCCC----CCCC-CCCCCCcCEEeCCCCCCCCCCCC-CCCCCcEEEeecccCCCCCcccCCCCCCCEEEeeCCcCC-C
Q 038636 191 HNAFSG----KIPS-LTGAWQLHTLDLDSNQLYGNLPK-FPTSLRTLSLSHNLLSGHLSSLRNLVNLKSLDLSSNRFT-G 263 (409)
Q Consensus 191 ~n~l~~----~~~~-~~~l~~L~~L~l~~n~l~~~~~~-~~~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~-~ 263 (409)
+|.+.+ .++. +..+++|++|++++|.+++..+. +...+..+ ..+.+. +..++|++|++++|+++ +
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l--~~~~~~------~~~~~L~~L~L~~n~l~~~ 174 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQEL--AVNKKA------KNAPPLRSIICGRNRLENG 174 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHH--HHHHHH------HTCCCCCEEECCSSCCTGG
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHH--hhhhhc------ccCCCCcEEECCCCCCCcH
Confidence 888775 2343 56667777777777766432221 10000000 000000 01178999999999987 4
Q ss_pred CCc---hhhcCCCCCcEEEccCCcCCcc-----CCCCCCCCCCCCEEEccCCcCC----CcchhhhcCCCCCCEEEccCC
Q 038636 264 AIS---HEVLTLPQVVSIDVSVNRLTAI-----EMTTLSGDTHLQELDVQGNLLR----GHLPINLVSLRNLTSINLARN 331 (409)
Q Consensus 264 ~~~---~~~~~l~~L~~L~L~~n~l~~~-----~~~~~~~~~~L~~L~Ls~n~l~----~~~p~~l~~l~~L~~L~L~~N 331 (409)
.++ ..+..+++|++|++++|+++.. .+..+..+++|++|+|++|.++ +.+|..+..+++|+.|+|++|
T Consensus 175 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n 254 (386)
T 2ca6_A 175 SMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC 254 (386)
T ss_dssp GHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTC
T ss_pred HHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCC
Confidence 444 4677899999999999999832 2236778999999999999996 678889999999999999999
Q ss_pred eeccc----CchhHhhhccCCccEEEccCCcCcc----cCchhh-hcCCCCCeEEcCCCcc
Q 038636 332 QLSGH----IPKVYGAKLGSSWRSLFLDHNFLWG----NLPPEF-SSSITRIRGSLAKNCL 383 (409)
Q Consensus 332 ~l~~~----~p~~~~~~~~~~L~~L~L~~N~l~~----~~p~~~-~~~~~L~~L~l~~N~l 383 (409)
++++. +|..+.....++|++|+|++|.+++ .+|..+ .++++|++|++++|++
T Consensus 255 ~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 255 LLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp CCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred CCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence 99977 4555533112459999999999998 588888 6689999999999999
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=2.7e-23 Score=186.41 Aligned_cols=199 Identities=20% Similarity=0.297 Sum_probs=130.2
Q ss_pred CCCcEEEccCCcCCCCCcccccCCCCCcEEeccCcc-CCccCchhccCCCCCCEEeccC-CcCCCCCchhhcCCCCCCeE
Q 038636 110 TELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNF-FTGNIPVGITRLKKLQTLDLSH-NSLSGIIPAQLSGLRSLTAL 187 (409)
Q Consensus 110 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-~~~~~p~~l~~l~~L~~L~l~~-n~l~~~~p~~l~~l~~L~~L 187 (409)
++|++|++++|.+++..+..|.++++|++|++++|. +++..+..|.++++|++|++++ |.+++..+..|..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 378899999999987666688889999999999997 7755555788889999999988 88887666778888888888
Q ss_pred EeecCcCCCCCCCCCCCCCcCEEeCCCCCCCCCCCCCCCCCcEEEeecc-cCCCCCc-ccCCCCCCC-EEEeeCCcCCCC
Q 038636 188 RLSHNAFSGKIPSLTGAWQLHTLDLDSNQLYGNLPKFPTSLRTLSLSHN-LLSGHLS-SLRNLVNLK-SLDLSSNRFTGA 264 (409)
Q Consensus 188 ~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n-~l~~~~~-~l~~l~~L~-~L~l~~n~l~~~ 264 (409)
++++|.+++ +|.+..+++|+ .|++|++++| .+++..+ .+..+++|+ .|++++|+++ .
T Consensus 111 ~l~~n~l~~-lp~~~~l~~L~------------------~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~ 170 (239)
T 2xwt_C 111 GIFNTGLKM-FPDLTKVYSTD------------------IFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-S 170 (239)
T ss_dssp EEEEECCCS-CCCCTTCCBCC------------------SEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-E
T ss_pred eCCCCCCcc-ccccccccccc------------------cccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-c
Confidence 888888875 55555444443 1224444444 4443333 455666666 6666666666 3
Q ss_pred CchhhcCCCCCcEEEccCCc-CCccCCCCCCCC-CCCCEEEccCCcCCCcchhhhcCCCCCCEEEccCC
Q 038636 265 ISHEVLTLPQVVSIDVSVNR-LTAIEMTTLSGD-THLQELDVQGNLLRGHLPINLVSLRNLTSINLARN 331 (409)
Q Consensus 265 ~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~-~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N 331 (409)
+|......++|+.|++++|+ ++++++..+..+ ++|+.|++++|+++ .+|.. .+++|+.|+++++
T Consensus 171 i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 171 VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNT 236 (239)
T ss_dssp ECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC
T ss_pred cCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCc
Confidence 33332233566666666663 665555555555 56666666666665 33332 4455566655554
No 85
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.90 E-value=6.3e-24 Score=198.21 Aligned_cols=225 Identities=19% Similarity=0.142 Sum_probs=133.9
Q ss_pred CCcEEEccCCcCCCCCcc---cccCCCCCcEEeccCccCCccCchhc--cCCCCCCEEeccCCcCCCCCc----hhhcCC
Q 038636 111 ELTTLDLSRNNFRGPIPD---TITDLRKLTTLYLPGNFFTGNIPVGI--TRLKKLQTLDLSHNSLSGIIP----AQLSGL 181 (409)
Q Consensus 111 ~L~~L~L~~n~l~~~~p~---~l~~l~~L~~L~L~~n~~~~~~p~~l--~~l~~L~~L~l~~n~l~~~~p----~~l~~l 181 (409)
.++.+.+.++.++...-. .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 355566655554321000 11123456666666666666666555 566666666666666665443 233445
Q ss_pred CCCCeEEeecCcCCCCCCC-CCCCCCcCEEeCCCCCCCCCCCCCCCCCcEEEeecccCCCCCc--ccCCCCCCCEEEeeC
Q 038636 182 RSLTALRLSHNAFSGKIPS-LTGAWQLHTLDLDSNQLYGNLPKFPTSLRTLSLSHNLLSGHLS--SLRNLVNLKSLDLSS 258 (409)
Q Consensus 182 ~~L~~L~L~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~--~l~~l~~L~~L~l~~ 258 (409)
++|++|++++|.+.+..+. +..+++|++|++++|++.+... ..+ .+..+++|++|++++
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------------------~~~~~~~~~l~~L~~L~Ls~ 206 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERG------------------LMAALCPHKFPAIQNLALRN 206 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHH------------------HHTTSCTTSSCCCCSCBCCS
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchh------------------hhHHHhhhcCCCCCEEECCC
Confidence 6666666666666554443 5555556666665555432100 111 235667777777777
Q ss_pred CcCCCCCch----hhcCCCCCcEEEccCCcCCccCCCCCCCC---CCCCEEEccCCcCCCcchhhhcCCCCCCEEEccCC
Q 038636 259 NRFTGAISH----EVLTLPQVVSIDVSVNRLTAIEMTTLSGD---THLQELDVQGNLLRGHLPINLVSLRNLTSINLARN 331 (409)
Q Consensus 259 n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~~~~~~~~---~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N 331 (409)
|+++. ++. .+..+++|++|++++|++++..+..+..+ ++|++|++++|+++ .+|..+. ++|++|+|++|
T Consensus 207 N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N 282 (310)
T 4glp_A 207 TGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSN 282 (310)
T ss_dssp SCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSC
T ss_pred CCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCC
Confidence 77762 222 24567788888888888877545555444 58888888888888 6676654 68888888888
Q ss_pred eecccCchhHhhhccCCccEEEccCCcCcc
Q 038636 332 QLSGHIPKVYGAKLGSSWRSLFLDHNFLWG 361 (409)
Q Consensus 332 ~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~ 361 (409)
++++. |. +..++. |++|++++|.++.
T Consensus 283 ~l~~~-~~-~~~l~~--L~~L~L~~N~l~~ 308 (310)
T 4glp_A 283 RLNRA-PQ-PDELPE--VDNLTLDGNPFLV 308 (310)
T ss_dssp CCCSC-CC-TTSCCC--CSCEECSSTTTSC
T ss_pred cCCCC-ch-hhhCCC--ccEEECcCCCCCC
Confidence 88753 32 344443 8888888888763
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.90 E-value=1.9e-23 Score=194.93 Aligned_cols=227 Identities=19% Similarity=0.182 Sum_probs=161.0
Q ss_pred CcEEEEEccCCCCCCCCcc---ccCCCCCCcEEEccCCcCCCCCcccc--cCCCCCcEEeccCccCCccCc----hhccC
Q 038636 86 SRITAIYLDSSGYDGFLTP---SIGNLTELTTLDLSRNNFRGPIPDTI--TDLRKLTTLYLPGNFFTGNIP----VGITR 156 (409)
Q Consensus 86 ~~v~~L~L~~~~l~~~~~~---~l~~l~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~L~~n~~~~~~p----~~l~~ 156 (409)
.+++.+.+.+..++...-. .+..+++|++|++++|.+++..|..+ ..+++|++|++++|.+.+..| ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 3567778877766532111 12245679999999999999999888 999999999999999997655 44567
Q ss_pred CCCCCEEeccCCcCCCCCchhhcCCCCCCeEEeecCcCCCC--CC-C--CCCCCCcCEEeCCCCCCCCCCCCCCCCCcEE
Q 038636 157 LKKLQTLDLSHNSLSGIIPAQLSGLRSLTALRLSHNAFSGK--IP-S--LTGAWQLHTLDLDSNQLYGNLPKFPTSLRTL 231 (409)
Q Consensus 157 l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~--~~-~--~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L 231 (409)
+++|++|++++|.+.+..|..++.+++|++|++++|++.+. ++ . +..+++|++|++++|+++...+
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~--------- 214 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTG--------- 214 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHH---------
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHH---------
Confidence 99999999999999988888999999999999999998753 22 2 4677778888888777652111
Q ss_pred EeecccCCCCCc-ccCCCCCCCEEEeeCCcCCCCCchhhcCC---CCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCC
Q 038636 232 SLSHNLLSGHLS-SLRNLVNLKSLDLSSNRFTGAISHEVLTL---PQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGN 307 (409)
Q Consensus 232 ~l~~n~l~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n 307 (409)
... .+..+++|++|++++|++++..|..+..+ ++|++|++++|+++.+ +..+. ++|++|++++|
T Consensus 215 ---------~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~l-p~~~~--~~L~~L~Ls~N 282 (310)
T 4glp_A 215 ---------VCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQV-PKGLP--AKLRVLDLSSN 282 (310)
T ss_dssp ---------HHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSC-CSCCC--SCCSCEECCSC
T ss_pred ---------HHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCch-hhhhc--CCCCEEECCCC
Confidence 000 13455666666666666666655555554 5777777777777653 33332 57777777777
Q ss_pred cCCCcchhhhcCCCCCCEEEccCCeecc
Q 038636 308 LLRGHLPINLVSLRNLTSINLARNQLSG 335 (409)
Q Consensus 308 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~ 335 (409)
++++. |. +..+++|+.|++++|+++.
T Consensus 283 ~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 283 RLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred cCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 77743 32 4566777777777777653
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=1.6e-24 Score=204.39 Aligned_cols=252 Identities=19% Similarity=0.172 Sum_probs=187.8
Q ss_pred CCcEEEccCCcCCCCCcccccCC--CCCcEEeccCccCCccCchhccCCCCCCEEeccCCcCCCC-CchhhcCCCCCCeE
Q 038636 111 ELTTLDLSRNNFRGPIPDTITDL--RKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHNSLSGI-IPAQLSGLRSLTAL 187 (409)
Q Consensus 111 ~L~~L~L~~n~l~~~~p~~l~~l--~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~-~p~~l~~l~~L~~L 187 (409)
.++.++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+++. +|..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 4678888888776 4566666 7888888888888866554 56788888888888888765 67778888888888
Q ss_pred EeecCcCCCCCCC-CCCCCCcCEEeCCCC-CCCCCCCCCCCCCcEEEeecccCCCCCc-ccCCCCCCCEEEeeCC-cCCC
Q 038636 188 RLSHNAFSGKIPS-LTGAWQLHTLDLDSN-QLYGNLPKFPTSLRTLSLSHNLLSGHLS-SLRNLVNLKSLDLSSN-RFTG 263 (409)
Q Consensus 188 ~L~~n~l~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~l~~n-~l~~ 263 (409)
++++|.+++..+. +..+++|++|++++| .+++. ..+ .+..+++|++|++++| .+++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~--------------------~l~~~~~~~~~L~~L~l~~~~~l~~ 183 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF--------------------ALQTLLSSCSRLDELNLSWCFDFTE 183 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH--------------------HHHHHHHHCTTCCEEECCCCTTCCH
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHH--------------------HHHHHHhcCCCCCEEcCCCCCCcCh
Confidence 8888887765554 666777777777766 33321 123 4667889999999999 8886
Q ss_pred C-CchhhcCCC-CCcEEEccCC--cCCc-cCCCCCCCCCCCCEEEccCCc-CCCcchhhhcCCCCCCEEEccCCe-eccc
Q 038636 264 A-ISHEVLTLP-QVVSIDVSVN--RLTA-IEMTTLSGDTHLQELDVQGNL-LRGHLPINLVSLRNLTSINLARNQ-LSGH 336 (409)
Q Consensus 264 ~-~~~~~~~l~-~L~~L~L~~n--~l~~-~~~~~~~~~~~L~~L~Ls~n~-l~~~~p~~l~~l~~L~~L~L~~N~-l~~~ 336 (409)
. ++..+..++ +|++|++++| .+++ ..+..+..+++|++|++++|. +++..+..+..+++|+.|++++|. +...
T Consensus 184 ~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 263 (336)
T 2ast_B 184 KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPE 263 (336)
T ss_dssp HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGG
T ss_pred HHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHH
Confidence 4 577788999 9999999999 4552 123345678999999999999 787888899999999999999995 4433
Q ss_pred CchhHhhhccCCccEEEccCCcCcccCchhhhcCCCCCeEEcCCCcc--CCCchhhh
Q 038636 337 IPKVYGAKLGSSWRSLFLDHNFLWGNLPPEFSSSITRIRGSLAKNCL--SCPETIRL 391 (409)
Q Consensus 337 ~p~~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~l~~N~l--~~p~~l~~ 391 (409)
....+..++. |++|++++| ++...-..+. ..+..|++++|.+ ..|+.+..
T Consensus 264 ~~~~l~~~~~--L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 264 TLLELGEIPT--LKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp GGGGGGGCTT--CCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSCSS
T ss_pred HHHHHhcCCC--CCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccCCcccc
Confidence 3335666655 999999999 5543323332 2367788999999 56666554
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=2.9e-22 Score=181.06 Aligned_cols=179 Identities=22% Similarity=0.242 Sum_probs=100.7
Q ss_pred CcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEeccCCcCCCCCchhhcCCCCCCeEEeec
Q 038636 112 LTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTALRLSH 191 (409)
Q Consensus 112 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~ 191 (409)
.++++++++.++ .+|..+. +.+++|++++|.+.+..+..++++++|++|++++|.+++..+..+..+++|++|++++
T Consensus 16 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 16 KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 345555555555 3444333 3555555555555544444455555555555555555544444444444444444444
Q ss_pred CcCCCCCCCCCCCCCcCEEeCCCCCCCCCCCCCCCCCcEEEeecccCCCCCcccCCCCCCCEEEeeCCcCCCCCchhhcC
Q 038636 192 NAFSGKIPSLTGAWQLHTLDLDSNQLYGNLPKFPTSLRTLSLSHNLLSGHLSSLRNLVNLKSLDLSSNRFTGAISHEVLT 271 (409)
Q Consensus 192 n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~ 271 (409)
|.+++..+. .+..+++|++|++++|++++..+..+..
T Consensus 93 n~l~~~~~~-------------------------------------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 129 (251)
T 3m19_A 93 NQLASLPLG-------------------------------------------VFDHLTQLDKLYLGGNQLKSLPSGVFDR 129 (251)
T ss_dssp SCCCCCCTT-------------------------------------------TTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CcccccChh-------------------------------------------HhcccCCCCEEEcCCCcCCCcChhHhcc
Confidence 444322221 3344555556666666655554545556
Q ss_pred CCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchhhhcCCCCCCEEEccCCeeccc
Q 038636 272 LPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLTSINLARNQLSGH 336 (409)
Q Consensus 272 l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 336 (409)
+++|++|++++|+++++++..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+.
T Consensus 130 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 130 LTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 66666666666666665544566666677777777777655555666777777777777777655
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=4.2e-23 Score=185.19 Aligned_cols=195 Identities=14% Similarity=0.160 Sum_probs=120.9
Q ss_pred CCcEEeccCccCCccCchhccCCCCCCEEeccCCc-CCCCCchhhcCCCCCCeEEeec-CcCCCCCCC-CCCCCCcCEEe
Q 038636 135 KLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHNS-LSGIIPAQLSGLRSLTALRLSH-NAFSGKIPS-LTGAWQLHTLD 211 (409)
Q Consensus 135 ~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~-l~~~~p~~l~~l~~L~~L~L~~-n~l~~~~~~-~~~l~~L~~L~ 211 (409)
+|++|++++|.+++..+..|.++++|++|++++|. +++..+..|..+++|++|++++ |.+++..+. +..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 78888888888875555577788888888888886 6655555677777888888877 776644333 44444444444
Q ss_pred CCCCCCCCCCCCCCCCCcEEEeecccCCCCCcccCCCCCCC---EEEeeCC-cCCCCCchhhcCCCCCc-EEEccCCcCC
Q 038636 212 LDSNQLYGNLPKFPTSLRTLSLSHNLLSGHLSSLRNLVNLK---SLDLSSN-RFTGAISHEVLTLPQVV-SIDVSVNRLT 286 (409)
Q Consensus 212 l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~l~~l~~L~---~L~l~~n-~l~~~~~~~~~~l~~L~-~L~L~~n~l~ 286 (409)
+++|. +++. |.+..+++|+ +|++++| .+++..+..|..+++|+ +|++++|+++
T Consensus 112 l~~n~---------------------l~~l-p~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 112 IFNTG---------------------LKMF-PDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp EEEEC---------------------CCSC-CCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred CCCCC---------------------Cccc-cccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence 44443 3332 2244555555 7777777 67655555666777777 7777777776
Q ss_pred ccCCCCCCCCCCCCEEEccCCc-CCCcchhhhcCC-CCCCEEEccCCeecccCchhHhhhccCCccEEEccCC
Q 038636 287 AIEMTTLSGDTHLQELDVQGNL-LRGHLPINLVSL-RNLTSINLARNQLSGHIPKVYGAKLGSSWRSLFLDHN 357 (409)
Q Consensus 287 ~~~~~~~~~~~~L~~L~Ls~n~-l~~~~p~~l~~l-~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N 357 (409)
.++...+.. ++|++|++++|+ +++..+..+..+ ++|+.|++++|++++ +|.. .+. +|+.|+++++
T Consensus 170 ~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~--~L~~L~l~~~ 236 (239)
T 2xwt_C 170 SVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLE--HLKELIARNT 236 (239)
T ss_dssp EECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCT--TCSEEECTTC
T ss_pred ccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--Hhc--cCceeeccCc
Confidence 544444444 566777777763 664445556666 666666666666663 3322 222 2666666554
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.89 E-value=2e-22 Score=187.80 Aligned_cols=191 Identities=24% Similarity=0.411 Sum_probs=141.7
Q ss_pred CCcEEEEEccCCCCCCCCccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEe
Q 038636 85 TSRITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLD 164 (409)
Q Consensus 85 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~ 164 (409)
..++++|+++++.++.. + .+..+++|++|++++|.+++. +. +..+++|++|++++|.+.+ ++ .+..+++|++|+
T Consensus 40 l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEE
T ss_pred cCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEE
Confidence 46799999999998874 3 688999999999999999854 44 9999999999999999985 44 689999999999
Q ss_pred ccCCcCCCCCchhhcCCCCCCeEEeecCcCCCCCCCCCCCCCcCEEeCCCCCCCCCCCCCCCCCcEEEeecccCCCCCcc
Q 038636 165 LSHNSLSGIIPAQLSGLRSLTALRLSHNAFSGKIPSLTGAWQLHTLDLDSNQLYGNLPKFPTSLRTLSLSHNLLSGHLSS 244 (409)
Q Consensus 165 l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~ 244 (409)
+++|.+++. + .+..+++|++|++++|.+++. +.+..+++|++|++++|.+++..+
T Consensus 114 l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~---------------------- 168 (308)
T 1h6u_A 114 LTSTQITDV-T-PLAGLSNLQVLYLDLNQITNI-SPLAGLTNLQYLSIGNAQVSDLTP---------------------- 168 (308)
T ss_dssp CTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCC-GGGGGCTTCCEEECCSSCCCCCGG----------------------
T ss_pred CCCCCCCCc-h-hhcCCCCCCEEECCCCccCcC-ccccCCCCccEEEccCCcCCCChh----------------------
Confidence 999999864 4 389999999999999999854 447888888888888887765332
Q ss_pred cCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCC
Q 038636 245 LRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLR 310 (409)
Q Consensus 245 l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~ 310 (409)
+..+++|+.|++++|.+++..+ +..+++|++|++++|++++.. .+..+++|+.|++++|.++
T Consensus 169 l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 169 LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 3444555555555555553322 445555555555555555432 2455555555555555554
No 91
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.89 E-value=1e-24 Score=221.32 Aligned_cols=294 Identities=12% Similarity=0.058 Sum_probs=161.5
Q ss_pred cEEEEEccCCC-CCC-CCccccCCCCCCcEEEccCCcCCCC----CcccccCCCCCcEEeccCccCC----ccCchhccC
Q 038636 87 RITAIYLDSSG-YDG-FLTPSIGNLTELTTLDLSRNNFRGP----IPDTITDLRKLTTLYLPGNFFT----GNIPVGITR 156 (409)
Q Consensus 87 ~v~~L~L~~~~-l~~-~~~~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~~~----~~~p~~l~~ 156 (409)
++++|+++++. ++. .++....++++|++|+|++|.+++. ++..+..+++|++|++++|.++ +.++..+.+
T Consensus 139 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~ 218 (592)
T 3ogk_B 139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARN 218 (592)
T ss_dssp GCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHH
T ss_pred cCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhh
Confidence 37777776654 111 1112223567777777777766544 3334455666777777766665 233444456
Q ss_pred CCCCCEEeccCCcCCCCCchhhcCCCCCCeEEeecCcC--------------------------CCCCCC-CCCCCCcCE
Q 038636 157 LKKLQTLDLSHNSLSGIIPAQLSGLRSLTALRLSHNAF--------------------------SGKIPS-LTGAWQLHT 209 (409)
Q Consensus 157 l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l--------------------------~~~~~~-~~~l~~L~~ 209 (409)
+++|++|++++|.+.+ +|..+..+++|++|+++.... .+.+|. +..+++|++
T Consensus 219 ~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~ 297 (592)
T 3ogk_B 219 CRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRK 297 (592)
T ss_dssp CTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCE
T ss_pred CCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcE
Confidence 6667777776666553 444555555555555543211 112222 344556666
Q ss_pred EeCCCCCCCCCCC----CCC------------------------CCCcEEEeec-----------ccCCCCC-c-ccCCC
Q 038636 210 LDLDSNQLYGNLP----KFP------------------------TSLRTLSLSH-----------NLLSGHL-S-SLRNL 248 (409)
Q Consensus 210 L~l~~n~l~~~~~----~~~------------------------~~L~~L~l~~-----------n~l~~~~-~-~l~~l 248 (409)
|++++|.+++... ... ++|++|++++ +.+++.. . ....+
T Consensus 298 L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (592)
T 3ogk_B 298 LDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGC 377 (592)
T ss_dssp EEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHC
T ss_pred EecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhC
Confidence 6666666543211 112 3445555542 2222211 1 12335
Q ss_pred CCCCEEEeeCCcCCCCCchhhcC-CCCCcEEEcc----CCcCCccCCC-----CCCCCCCCCEEEccCCc--CCCcchhh
Q 038636 249 VNLKSLDLSSNRFTGAISHEVLT-LPQVVSIDVS----VNRLTAIEMT-----TLSGDTHLQELDVQGNL--LRGHLPIN 316 (409)
Q Consensus 249 ~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~L~----~n~l~~~~~~-----~~~~~~~L~~L~Ls~n~--l~~~~p~~ 316 (409)
++|++|+++.|.+++..+..+.. +++|+.|+++ .|.+++.+.. .+..+++|++|++++|. +++..+..
T Consensus 378 ~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~ 457 (592)
T 3ogk_B 378 QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSY 457 (592)
T ss_dssp TTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHH
T ss_pred ccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHH
Confidence 55666666555555554444444 6666666664 4455542111 13446677777776433 55555555
Q ss_pred hcC-CCCCCEEEccCCeecccC-chhHhhhccCCccEEEccCCcCccc-CchhhhcCCCCCeEEcCCCcc
Q 038636 317 LVS-LRNLTSINLARNQLSGHI-PKVYGAKLGSSWRSLFLDHNFLWGN-LPPEFSSSITRIRGSLAKNCL 383 (409)
Q Consensus 317 l~~-l~~L~~L~L~~N~l~~~~-p~~~~~~~~~~L~~L~L~~N~l~~~-~p~~~~~~~~L~~L~l~~N~l 383 (409)
++. +++|+.|++++|++++.. +..+..++ +|++|++++|.+++. ++..+..+++|++|++++|++
T Consensus 458 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~--~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~i 525 (592)
T 3ogk_B 458 IGQYSPNVRWMLLGYVGESDEGLMEFSRGCP--NLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRA 525 (592)
T ss_dssp HHHSCTTCCEEEECSCCSSHHHHHHHHTCCT--TCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBC
T ss_pred HHHhCccceEeeccCCCCCHHHHHHHHhcCc--ccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcC
Confidence 543 677888888888877633 33334444 388888888887754 444556778888888888887
No 92
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.88 E-value=1.8e-24 Score=219.59 Aligned_cols=228 Identities=11% Similarity=-0.007 Sum_probs=148.2
Q ss_pred hhccCCCCCCEEeccCCcCCCCCc-hhhcCCCCCCeEEeecCcCCCCCCC-CCCCCCcCEEeCCC-----------CCCC
Q 038636 152 VGITRLKKLQTLDLSHNSLSGIIP-AQLSGLRSLTALRLSHNAFSGKIPS-LTGAWQLHTLDLDS-----------NQLY 218 (409)
Q Consensus 152 ~~l~~l~~L~~L~l~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~~~-~~~l~~L~~L~l~~-----------n~l~ 218 (409)
..+..+++|++|++++|.+++... ..+..+++|++|+++++...+.++. ...+++|++|++++ +.++
T Consensus 287 ~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~ 366 (592)
T 3ogk_B 287 ILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVS 366 (592)
T ss_dssp GGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCC
T ss_pred HHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccC
Confidence 333444455555555554432222 2234455555555552211111222 24467788888883 4554
Q ss_pred CCCC----CCCCCCcEEEeecccCCCCCc-ccCC-CCCCCEEEee----CCcCCCC-----CchhhcCCCCCcEEEccCC
Q 038636 219 GNLP----KFPTSLRTLSLSHNLLSGHLS-SLRN-LVNLKSLDLS----SNRFTGA-----ISHEVLTLPQVVSIDVSVN 283 (409)
Q Consensus 219 ~~~~----~~~~~L~~L~l~~n~l~~~~~-~l~~-l~~L~~L~l~----~n~l~~~-----~~~~~~~l~~L~~L~L~~n 283 (409)
+... ...++|++|+++.|.+++... .+.. +++|+.|+++ .|.+++. ++..+..+++|++|++++|
T Consensus 367 ~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~ 446 (592)
T 3ogk_B 367 QRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLR 446 (592)
T ss_dssp HHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECC
T ss_pred HHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecC
Confidence 3211 224799999999899887655 5554 8899999997 6677764 3444677999999999864
Q ss_pred c--CCccCCCCC-CCCCCCCEEEccCCcCCC-cchhhhcCCCCCCEEEccCCeecccCchhH-hhhccCCccEEEccCCc
Q 038636 284 R--LTAIEMTTL-SGDTHLQELDVQGNLLRG-HLPINLVSLRNLTSINLARNQLSGHIPKVY-GAKLGSSWRSLFLDHNF 358 (409)
Q Consensus 284 ~--l~~~~~~~~-~~~~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~-~~~~~~~L~~L~L~~N~ 358 (409)
. +++.....+ ..+++|++|++++|.+++ .++..+..+++|++|++++|.+++.....+ ..++. |++|++++|+
T Consensus 447 ~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~--L~~L~ls~n~ 524 (592)
T 3ogk_B 447 QGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPS--LRYLWVQGYR 524 (592)
T ss_dssp GGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSS--CCEEEEESCB
T ss_pred CCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCc--cCeeECcCCc
Confidence 3 555333333 347899999999999986 456667889999999999999986644443 44544 9999999999
Q ss_pred CcccCchhh-hcCCCCCeEEcCCC
Q 038636 359 LWGNLPPEF-SSSITRIRGSLAKN 381 (409)
Q Consensus 359 l~~~~p~~~-~~~~~L~~L~l~~N 381 (409)
+++.-...+ ..++.+....+..+
T Consensus 525 it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 525 ASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp CCTTCTTGGGGCCTTEEEEEECCC
T ss_pred CCHHHHHHHHHhCCCcEEEEecCc
Confidence 987644333 35566666656554
No 93
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.88 E-value=2.4e-22 Score=201.22 Aligned_cols=212 Identities=21% Similarity=0.304 Sum_probs=142.1
Q ss_pred CCCCCCCCCCCCCCCceeee-ecCCCCCCCCCcEEEEEccCCCCCCCCccccCCCCCCcEEEccCCcCCCCCcccccCCC
Q 038636 56 DSWDFKLDPCESSGGQFLGI-LCSIPSDNSTSRITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLR 134 (409)
Q Consensus 56 ~~w~~~~~~C~~~~~~w~gv-~c~~~~~~~~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 134 (409)
.+|....++|......|.|+ .|. ..+++.|+++++.+++ +|..+ +++|++|++++|.++ .+| ..++
T Consensus 34 ~~W~~~~~~~~~~~~~~~~l~~C~------~~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~ 100 (571)
T 3cvr_A 34 DKWEKQALPGENRNEAVSLLKECL------INQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPA 100 (571)
T ss_dssp HHHHTTCCTTCCHHHHHHHHHHHH------HTTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCT
T ss_pred HHHhccCCccccccchhhhccccc------cCCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccC
Confidence 35655566774211237888 685 3578899999999887 66655 378999999999888 566 4578
Q ss_pred CCcEEeccCccCCccCchhccCCCCCCEEeccCCcCCCCCchhhcCCCCCCeEEeecCcCCCCCCCCCCCCCcCEEeCCC
Q 038636 135 KLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTALRLSHNAFSGKIPSLTGAWQLHTLDLDS 214 (409)
Q Consensus 135 ~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~ 214 (409)
+|++|++++|.+++ +|. +.+ +|++|++++|.+++ +|. .+++|++|++++|.+++ +|. .+++|++|++++
T Consensus 101 ~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~--~l~~L~~L~Ls~ 169 (571)
T 3cvr_A 101 SLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE--LPTSLEVLSVRN 169 (571)
T ss_dssp TCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCS
T ss_pred CCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC--cCCCcCEEECCC
Confidence 88888888888885 777 655 88888888888886 555 56788888888887775 454 455666666666
Q ss_pred CCCCCCCCCCCCCCcEEEeecccCCCCCcccCCCCCCCEEEeeCCcCCCCCchhhcCCCCC-------cEEEccCCcCCc
Q 038636 215 NQLYGNLPKFPTSLRTLSLSHNLLSGHLSSLRNLVNLKSLDLSSNRFTGAISHEVLTLPQV-------VSIDVSVNRLTA 287 (409)
Q Consensus 215 n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-------~~L~L~~n~l~~ 287 (409)
|.+++ +|.+. ++|+.|++++|+++ .+|. +.. +| +.|+|++|+++.
T Consensus 170 N~L~~-lp~l~-----------------------~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~ 221 (571)
T 3cvr_A 170 NQLTF-LPELP-----------------------ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRITH 221 (571)
T ss_dssp SCCSC-CCCCC-----------------------TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCCC
T ss_pred CCCCC-cchhh-----------------------CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCccee
Confidence 66654 33232 45555555555555 3333 322 44 777777777775
Q ss_pred cCCCCCCCCCCCCEEEccCCcCCCcchhhhcCC
Q 038636 288 IEMTTLSGDTHLQELDVQGNLLRGHLPINLVSL 320 (409)
Q Consensus 288 ~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l 320 (409)
.+..+..+++|+.|+|++|.+++.+|..+..+
T Consensus 222 -lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 222 -IPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp -CCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred -cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 33444457777777777777777777766554
No 94
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.87 E-value=8.5e-22 Score=197.19 Aligned_cols=188 Identities=26% Similarity=0.363 Sum_probs=107.4
Q ss_pred CCcEEeccCccCCccCchhccCCCCCCEEeccCCcCCCCCchhhcCCCCCCeEEeecCcCCCCCCCCCCCCCcCEEeCCC
Q 038636 135 KLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTALRLSHNAFSGKIPSLTGAWQLHTLDLDS 214 (409)
Q Consensus 135 ~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~ 214 (409)
+|++|++++|.+++ +|..+. ++|++|++++|.++ .+| ..+++|++|++++|.+++ +|.+.. +|++|++++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPELPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCCCCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cchhhc--CCCEEECCC
Confidence 34444444444442 333331 34444444444444 233 223444444444444443 333222 444444444
Q ss_pred CCCCCCCCCCCCCCcEEEeecccCCCCCcccCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCCCCCC
Q 038636 215 NQLYGNLPKFPTSLRTLSLSHNLLSGHLSSLRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLS 294 (409)
Q Consensus 215 n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 294 (409)
|.+++ +|...++|+.|++++|.+++.+. .+++|+.|++++|++++ +|. +. ++|+.|+|++|+++.++. +.
T Consensus 130 N~l~~-lp~~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~lp~--~~ 199 (571)
T 3cvr_A 130 NQLTM-LPELPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLESLPA--VP 199 (571)
T ss_dssp SCCSC-CCCCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSCCC--CC
T ss_pred CcCCC-CCCcCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCchhh--HH
Confidence 44444 22233455555555555555322 45678888888888876 555 54 788888888888886333 43
Q ss_pred CCCCC-------CEEEccCCcCCCcchhhhcCCCCCCEEEccCCeecccCchhHhhhc
Q 038636 295 GDTHL-------QELDVQGNLLRGHLPINLVSLRNLTSINLARNQLSGHIPKVYGAKL 345 (409)
Q Consensus 295 ~~~~L-------~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~ 345 (409)
. +| +.|+|++|.++ .+|..+..+++|+.|+|++|.+++.+|..+..+.
T Consensus 200 ~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 200 V--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp ----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred H--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 3 66 88888888888 5777777788888888888888888887777653
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.86 E-value=7.7e-21 Score=180.29 Aligned_cols=234 Identities=18% Similarity=0.136 Sum_probs=172.8
Q ss_pred ccCCCCCCCCccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCch-hccCCCCCCE-EeccCCcC
Q 038636 93 LDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPV-GITRLKKLQT-LDLSHNSL 170 (409)
Q Consensus 93 L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~-~l~~l~~L~~-L~l~~n~l 170 (409)
.++++++. +|..+ .+++++|+|++|+++...+..|.++++|++|+|++|.+.+.+|. .|.+++++++ +.++.|++
T Consensus 16 C~~~~Lt~-iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l 92 (350)
T 4ay9_X 16 CQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNL 92 (350)
T ss_dssp EESTTCCS-CCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTC
T ss_pred ecCCCCCc-cCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcc
Confidence 33455553 45544 36889999999999854445789999999999999998766764 5788888775 56667889
Q ss_pred CCCCchhhcCCCCCCeEEeecCcCCCCCCC-CCCCCCcCEEeCCCC-CCCCCCC----CCCCCCcEEEeecccCCCCCcc
Q 038636 171 SGIIPAQLSGLRSLTALRLSHNAFSGKIPS-LTGAWQLHTLDLDSN-QLYGNLP----KFPTSLRTLSLSHNLLSGHLSS 244 (409)
Q Consensus 171 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~----~~~~~L~~L~l~~n~l~~~~~~ 244 (409)
+...|..|..+++|++|++++|.+.+..+. +....++..+++.++ .+....+ .....++.|++++|.++...+.
T Consensus 93 ~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~ 172 (350)
T 4ay9_X 93 LYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNS 172 (350)
T ss_dssp CEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTT
T ss_pred cccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChh
Confidence 877788899999999999999999855443 556667788888654 4443322 2235688899999999877665
Q ss_pred cCCCCCCCEEEeeC-CcCCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchhhhcCCCCC
Q 038636 245 LRNLVNLKSLDLSS-NRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNL 323 (409)
Q Consensus 245 l~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L 323 (409)
.....+|+.+++.+ |.++...+..|..+++|++|++++|+++.++... +.+|+.|.+.++.--..+| .+.++++|
T Consensus 173 ~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~~l~~L 248 (350)
T 4ay9_X 173 AFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TLEKLVAL 248 (350)
T ss_dssp SSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CTTTCCSC
T ss_pred hccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-CchhCcCh
Confidence 55667899999976 5565444456788999999999999999865544 4567777766655444777 47888999
Q ss_pred CEEEccCCee
Q 038636 324 TSINLARNQL 333 (409)
Q Consensus 324 ~~L~L~~N~l 333 (409)
+.+++.++.-
T Consensus 249 ~~l~l~~~~~ 258 (350)
T 4ay9_X 249 MEASLTYPSH 258 (350)
T ss_dssp CEEECSCHHH
T ss_pred hhCcCCCCcc
Confidence 9999987543
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.86 E-value=5.2e-21 Score=167.74 Aligned_cols=175 Identities=23% Similarity=0.181 Sum_probs=92.3
Q ss_pred CeEEeecCcCCCCCCCCCCCCCcCEEeCCCCCCCCCCCCC---CCCCcEEEeecccCCCCCc-ccCCCCCCCEEEeeCCc
Q 038636 185 TALRLSHNAFSGKIPSLTGAWQLHTLDLDSNQLYGNLPKF---PTSLRTLSLSHNLLSGHLS-SLRNLVNLKSLDLSSNR 260 (409)
Q Consensus 185 ~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~l~~n~ 260 (409)
+.++.+++.++. +|. ...++|++|++++|.+++..+.. .++|++|++++|.+++..+ .+..+++|++|++++|+
T Consensus 10 ~~v~c~~~~l~~-~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTS-VPT-GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSS-CCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccC-CCC-CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 345555555542 222 11235666666666655444321 2555566666655555444 34555556666666665
Q ss_pred CCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchhhhcCCCCCCEEEccCCeecccCchh
Q 038636 261 FTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLTSINLARNQLSGHIPKV 340 (409)
Q Consensus 261 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~ 340 (409)
+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..|
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~-- 165 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP-- 165 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT--
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCC--
Confidence 554444445555566666666665555444445555556666666665554444445555556666666555554322
Q ss_pred HhhhccCCccEEEccCCcCcccCchhhhcC
Q 038636 341 YGAKLGSSWRSLFLDHNFLWGNLPPEFSSS 370 (409)
Q Consensus 341 ~~~~~~~~L~~L~L~~N~l~~~~p~~~~~~ 370 (409)
+|++|+++.|+++|.+|..++.+
T Consensus 166 -------~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 166 -------GIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp -------TTHHHHHHHHHCTTTBBCTTSSB
T ss_pred -------CHHHHHHHHHhCCceeeccCccc
Confidence 15555555555555555554443
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=7.3e-21 Score=166.79 Aligned_cols=159 Identities=25% Similarity=0.268 Sum_probs=98.0
Q ss_pred CCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEeccCCcCCCCCchhhcCCCCCCeEEe
Q 038636 110 TELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTALRL 189 (409)
Q Consensus 110 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L 189 (409)
++|++|++++|.+++..+..++++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 45666666666666544445566666666666666666443344566666666666666666544445566666666666
Q ss_pred ecCcCCCCCCC-CCCCCCcCEEeCCCCCCCCCCCCC---CCCCcEEEeecccCCCCCcccCCCCCCCEEEeeCCcCCCCC
Q 038636 190 SHNAFSGKIPS-LTGAWQLHTLDLDSNQLYGNLPKF---PTSLRTLSLSHNLLSGHLSSLRNLVNLKSLDLSSNRFTGAI 265 (409)
Q Consensus 190 ~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~ 265 (409)
++|.+++..+. +..+++|++|++++|.+++..+.. .++|+.|++++|.+.+ .+++|++|+++.|+++|.+
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~------~~~~l~~L~~~~n~~~g~i 181 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC------TCPGIRYLSEWINKHSGVV 181 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC------CTTTTHHHHHHHHHCTTTB
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec------CCCCHHHHHHHHHhCCcee
Confidence 66666644443 556666666666666666544421 2566666666665543 3456777777778888777
Q ss_pred chhhcCCCC
Q 038636 266 SHEVLTLPQ 274 (409)
Q Consensus 266 ~~~~~~l~~ 274 (409)
|..++.++.
T Consensus 182 p~~~~~l~~ 190 (208)
T 2o6s_A 182 RNSAGSVAP 190 (208)
T ss_dssp BCTTSSBCT
T ss_pred eccCccccC
Confidence 777766654
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.85 E-value=1.2e-20 Score=179.10 Aligned_cols=237 Identities=16% Similarity=0.123 Sum_probs=170.7
Q ss_pred cEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCc-hhccCCCCCCEEeccCCcCCCCCch-hhcCCCCCCe-EEe
Q 038636 113 TTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIP-VGITRLKKLQTLDLSHNSLSGIIPA-QLSGLRSLTA-LRL 189 (409)
Q Consensus 113 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p-~~l~~l~~L~~L~l~~n~l~~~~p~-~l~~l~~L~~-L~L 189 (409)
++++.++++++ .+|..+ .+++++|+|++|+++ .+| ..|.++++|++|+|++|.+.+.+|. .|.+++++++ +.+
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~ 87 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE 87 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence 57888888888 678766 368999999999999 555 5689999999999999998776664 5788888876 566
Q ss_pred ecCcCCCCCCC-CCCCCCcCEEeCCCCCCCCCCC-CCC--CCCcEEEeec-ccCCCCCc-ccCCCC-CCCEEEeeCCcCC
Q 038636 190 SHNAFSGKIPS-LTGAWQLHTLDLDSNQLYGNLP-KFP--TSLRTLSLSH-NLLSGHLS-SLRNLV-NLKSLDLSSNRFT 262 (409)
Q Consensus 190 ~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~--~~L~~L~l~~-n~l~~~~~-~l~~l~-~L~~L~l~~n~l~ 262 (409)
+.|+++...|. +..+++|++|++++|++.+..+ .+. .++..+++.+ +.+....+ .+..+. .++.|++++|+++
T Consensus 88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 67888866665 8889999999999998886655 222 4566777765 45555444 555553 5778888888887
Q ss_pred CCCchhhcCCCCCcEEEccC-CcCCccCCCCCCCCCCCCEEEccCCcCCCcchhhhcCCCCCCEEEccCCeecccCchhH
Q 038636 263 GAISHEVLTLPQVVSIDVSV-NRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLTSINLARNQLSGHIPKVY 341 (409)
Q Consensus 263 ~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~ 341 (409)
. ++.......+|+.+++.+ |.++.++...|..+++|++|++++|+++ .+|.. .+.+|+.|.+.++.-...+|. +
T Consensus 168 ~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~--~~~~L~~L~~l~~~~l~~lP~-l 242 (350)
T 4ay9_X 168 E-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSY--GLENLKKLRARSTYNLKKLPT-L 242 (350)
T ss_dssp E-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSS--SCTTCCEEECTTCTTCCCCCC-T
T ss_pred C-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChh--hhccchHhhhccCCCcCcCCC-c
Confidence 4 444444566788888864 6677665566788888888888888888 45532 355667776665543446663 5
Q ss_pred hhhccCCccEEEccCCcCc
Q 038636 342 GAKLGSSWRSLFLDHNFLW 360 (409)
Q Consensus 342 ~~~~~~~L~~L~L~~N~l~ 360 (409)
..+.. |+.+++.++.-.
T Consensus 243 ~~l~~--L~~l~l~~~~~c 259 (350)
T 4ay9_X 243 EKLVA--LMEASLTYPSHC 259 (350)
T ss_dssp TTCCS--CCEEECSCHHHH
T ss_pred hhCcC--hhhCcCCCCccc
Confidence 55554 888888765443
No 99
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.84 E-value=1.8e-20 Score=178.51 Aligned_cols=179 Identities=23% Similarity=0.169 Sum_probs=139.3
Q ss_pred CEEeCCCCCCCCCCCCCCCCCcEEEeecccCCCCCc-ccC-CCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcC
Q 038636 208 HTLDLDSNQLYGNLPKFPTSLRTLSLSHNLLSGHLS-SLR-NLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRL 285 (409)
Q Consensus 208 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~-~l~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 285 (409)
+.++++++.++.....+++.++.|++++|.+++..+ .+. .+++|+.|++++|++++..+..|..+++|++|+|++|++
T Consensus 21 ~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l 100 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100 (361)
T ss_dssp TEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcC
Confidence 567777777765433566778888888888887766 565 888899999999988877777888889999999999998
Q ss_pred CccCCCCCCCCCCCCEEEccCCcCCCcchhhhcCCCCCCEEEccCCeecccCchhH---hhhccCCccEEEccCCcCccc
Q 038636 286 TAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLTSINLARNQLSGHIPKVY---GAKLGSSWRSLFLDHNFLWGN 362 (409)
Q Consensus 286 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~---~~~~~~~L~~L~L~~N~l~~~ 362 (409)
+++.+..+..+++|++|+|++|.+++..|..|..+++|+.|+|++|++++..+..+ ..+.. |+.|+|++|++++.
T Consensus 101 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~--L~~L~L~~N~l~~l 178 (361)
T 2xot_A 101 HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPK--LMLLDLSSNKLKKL 178 (361)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTT--CCEEECCSSCCCCC
T ss_pred CcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCc--CCEEECCCCCCCcc
Confidence 88777778888899999999999987778888888999999999998885444434 34544 89999999999855
Q ss_pred CchhhhcCCC--CCeEEcCCCccCCCch
Q 038636 363 LPPEFSSSIT--RIRGSLAKNCLSCPET 388 (409)
Q Consensus 363 ~p~~~~~~~~--L~~L~l~~N~l~~p~~ 388 (409)
.+..+..++. ++.|++++|++.|...
T Consensus 179 ~~~~~~~l~~~~l~~l~l~~N~~~C~C~ 206 (361)
T 2xot_A 179 PLTDLQKLPAWVKNGLYLHNNPLECDCK 206 (361)
T ss_dssp CHHHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred CHHHhhhccHhhcceEEecCCCccCCcC
Confidence 5567777776 4788999998855544
No 100
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.84 E-value=2.3e-22 Score=204.05 Aligned_cols=295 Identities=15% Similarity=0.081 Sum_probs=166.0
Q ss_pred CCcEEEEEccCCCCCCCCccccC-CCCCCcEEEccCC-cCCCC-CcccccCCCCCcEEeccCccCCccCchhcc----CC
Q 038636 85 TSRITAIYLDSSGYDGFLTPSIG-NLTELTTLDLSRN-NFRGP-IPDTITDLRKLTTLYLPGNFFTGNIPVGIT----RL 157 (409)
Q Consensus 85 ~~~v~~L~L~~~~l~~~~~~~l~-~l~~L~~L~L~~n-~l~~~-~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~----~l 157 (409)
..++++|+++++.+++..+..+. .+++|++|++++| .++.. ++..+.++++|++|++++|.+++..+..+. .+
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 35788888888877766555554 5788888888887 44422 344445788888888888877654444333 55
Q ss_pred CCCCEEeccCCc--CCCC-CchhhcCCCCCCeEEeecCc-CCC-------------------------------------
Q 038636 158 KKLQTLDLSHNS--LSGI-IPAQLSGLRSLTALRLSHNA-FSG------------------------------------- 196 (409)
Q Consensus 158 ~~L~~L~l~~n~--l~~~-~p~~l~~l~~L~~L~L~~n~-l~~------------------------------------- 196 (409)
++|++|++++|. +... ++..+..+++|++|++++|. +.+
T Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~ 263 (594)
T 2p1m_B 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSG 263 (594)
T ss_dssp CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHT
T ss_pred CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhc
Confidence 678888877775 1110 11112345677777776651 110
Q ss_pred ----------------CCCC-CCCCCCcCEEeCCCCCCCCCCC----CCCCCCcEEEeecccCCC-CCc-ccCC------
Q 038636 197 ----------------KIPS-LTGAWQLHTLDLDSNQLYGNLP----KFPTSLRTLSLSHNLLSG-HLS-SLRN------ 247 (409)
Q Consensus 197 ----------------~~~~-~~~l~~L~~L~l~~n~l~~~~~----~~~~~L~~L~l~~n~l~~-~~~-~l~~------ 247 (409)
.++. +..+++|++|++++|.+++... ...++|++|++++| ++. ..+ ....
T Consensus 264 ~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~ 342 (594)
T 2p1m_B 264 CKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRE 342 (594)
T ss_dssp CTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCE
T ss_pred CCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCE
Confidence 0111 1135677777777777554221 12356666666655 211 011 1112
Q ss_pred ----------------------------CCCCCEEEeeCCcCCCCCchhhc-CCCCCcEEEcc--C----CcCCccCCC-
Q 038636 248 ----------------------------LVNLKSLDLSSNRFTGAISHEVL-TLPQVVSIDVS--V----NRLTAIEMT- 291 (409)
Q Consensus 248 ----------------------------l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~--~----n~l~~~~~~- 291 (409)
+++|+.|.+..|.+++..+..+. .+++|+.|+++ + +.+++.+..
T Consensus 343 L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~ 422 (594)
T 2p1m_B 343 LRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDI 422 (594)
T ss_dssp EEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHH
T ss_pred EEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhh
Confidence 34444444444444433333332 35666666666 2 334321110
Q ss_pred ----CCCCCCCCCEEEccCCcCCCcchhhhcC-CCCCCEEEccCCeecccCchhH-hhhccCCccEEEccCCcCcccCch
Q 038636 292 ----TLSGDTHLQELDVQGNLLRGHLPINLVS-LRNLTSINLARNQLSGHIPKVY-GAKLGSSWRSLFLDHNFLWGNLPP 365 (409)
Q Consensus 292 ----~~~~~~~L~~L~Ls~n~l~~~~p~~l~~-l~~L~~L~L~~N~l~~~~p~~~-~~~~~~~L~~L~L~~N~l~~~~p~ 365 (409)
.+..+++|++|++++ .+++..+..++. +++|+.|+|++|.+++..+..+ ..++. |++|++++|.+++..+.
T Consensus 423 ~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~--L~~L~L~~n~~~~~~~~ 499 (594)
T 2p1m_B 423 GFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDS--LRKLEIRDCPFGDKALL 499 (594)
T ss_dssp HHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTT--CCEEEEESCSCCHHHHH
T ss_pred HHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCC--cCEEECcCCCCcHHHHH
Confidence 123456677777755 555555555554 6778888888887776655555 33433 88888888887654433
Q ss_pred -hhhcCCCCCeEEcCCCcc
Q 038636 366 -EFSSSITRIRGSLAKNCL 383 (409)
Q Consensus 366 -~~~~~~~L~~L~l~~N~l 383 (409)
.+..+++|+.|++++|++
T Consensus 500 ~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 500 ANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HTGGGGGGSSEEEEESSCC
T ss_pred HHHHhCCCCCEEeeeCCCC
Confidence 334467788888888876
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.83 E-value=6.5e-20 Score=169.33 Aligned_cols=81 Identities=28% Similarity=0.374 Sum_probs=37.8
Q ss_pred CCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchhhhcCCCCCCEEE
Q 038636 248 LVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLTSIN 327 (409)
Q Consensus 248 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~ 327 (409)
+++|+.|++++|++++. ..+..+++|++|++++|++++..+ +..+++|+.|++++|.+++ +| .+..+++|+.|+
T Consensus 133 l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~ 206 (291)
T 1h6t_A 133 LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLE 206 (291)
T ss_dssp CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEE
T ss_pred CCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEE
Confidence 34444444444444432 234444444555555444444221 4444555555555555542 22 245555555555
Q ss_pred ccCCeec
Q 038636 328 LARNQLS 334 (409)
Q Consensus 328 L~~N~l~ 334 (409)
+++|+++
T Consensus 207 l~~n~i~ 213 (291)
T 1h6t_A 207 LFSQECL 213 (291)
T ss_dssp EEEEEEE
T ss_pred CcCCccc
Confidence 5555554
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.83 E-value=1.4e-20 Score=190.24 Aligned_cols=186 Identities=26% Similarity=0.321 Sum_probs=114.7
Q ss_pred EEEccCCCCCCCCccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEeccCCc
Q 038636 90 AIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHNS 169 (409)
Q Consensus 90 ~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~ 169 (409)
.+.+..+.+.+.++ +..+++|+.|++++|.+.. ++ .+..+++|+.|+|++|.+.+. |. +..+++|++|+|++|.
T Consensus 25 ~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~-~~-l~~l~~L~~L~Ls~N~ 98 (605)
T 1m9s_A 25 KDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDI-KP-LTNLKNLGWLFLDENK 98 (605)
T ss_dssp HHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCC-GG-GGGCTTCCEEECCSSC
T ss_pred HHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCC-hh-hccCCCCCEEECcCCC
Confidence 34445555554332 4567777777887777763 33 477777888888888777744 33 7777778888887777
Q ss_pred CCCCCchhhcCCCCCCeEEeecCcCCCCCCCCCCCCCcCEEeCCCCCCCCCCC-CCCCCCcEEEeecccCCCCCcccCCC
Q 038636 170 LSGIIPAQLSGLRSLTALRLSHNAFSGKIPSLTGAWQLHTLDLDSNQLYGNLP-KFPTSLRTLSLSHNLLSGHLSSLRNL 248 (409)
Q Consensus 170 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~L~~L~l~~n~l~~~~~~l~~l 248 (409)
+.+ + +.+..+++|++|+|++|.+.+ ++.+..+++|+.|++++|.+++... ...++|+.|+|++|.+.+..+ +..+
T Consensus 99 l~~-l-~~l~~l~~L~~L~Ls~N~l~~-l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l 174 (605)
T 1m9s_A 99 IKD-L-SSLKDLKKLKSLSLEHNGISD-INGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGL 174 (605)
T ss_dssp CCC-C-TTSTTCTTCCEEECTTSCCCC-CGGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGG-GTTC
T ss_pred CCC-C-hhhccCCCCCEEEecCCCCCC-CccccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchh-hccC
Confidence 764 2 357777777777777777764 4556667777777777776665411 222455555555555555444 5555
Q ss_pred CCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCc
Q 038636 249 VNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTA 287 (409)
Q Consensus 249 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 287 (409)
++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+
T Consensus 175 ~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 175 TKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp TTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred CCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 5555555555555532 235555555555555555554
No 103
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.83 E-value=3.1e-20 Score=164.26 Aligned_cols=152 Identities=20% Similarity=0.221 Sum_probs=84.1
Q ss_pred EEeCCCCCCCCCCCCCCCCCcEEEeecccCCCCCc--ccCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCC
Q 038636 209 TLDLDSNQLYGNLPKFPTSLRTLSLSHNLLSGHLS--SLRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLT 286 (409)
Q Consensus 209 ~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 286 (409)
.+++++|.++.....++..+++|++++|.+++..+ .+..+++|+.|++++|++++..+..|..+++|++|+|++|+++
T Consensus 15 ~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~ 94 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94 (220)
T ss_dssp EEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred EeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccC
Confidence 45555555443222344445555555555555433 3555556666666666665555555555666666666666665
Q ss_pred ccCCCCCCCCCCCCEEEccCCcCCCcchhhhcCCCCCCEEEccCCeecccCchhHhhhccCCccEEEccCCcCccc
Q 038636 287 AIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLTSINLARNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWGN 362 (409)
Q Consensus 287 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~ 362 (409)
+..+..+..+++|++|+|++|.+++..|..+..+++|++|+|++|++++..|..|..+.. |++|++++|.+.+.
T Consensus 95 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~--L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 95 NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHS--LSTLNLLANPFNCN 168 (220)
T ss_dssp CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTT--CCEEECCSCCEECS
T ss_pred ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCC--CCEEEecCcCCcCC
Confidence 544444555556666666666665555555555566666666666665555555555543 66666666655543
No 104
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.83 E-value=6.6e-20 Score=162.16 Aligned_cols=157 Identities=22% Similarity=0.185 Sum_probs=140.1
Q ss_pred CcEEEeecccCCCCCcccCCCCCCCEEEeeCCcCCCCCc-hhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccC
Q 038636 228 LRTLSLSHNLLSGHLSSLRNLVNLKSLDLSSNRFTGAIS-HEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQG 306 (409)
Q Consensus 228 L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~ 306 (409)
-+.+++++|.++..+..+. ..+++|++++|++++..+ ..|..+++|++|++++|+++++.+..+..+++|++|+|++
T Consensus 13 ~~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TTEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 4689999999987655553 457899999999997755 4588999999999999999998877899999999999999
Q ss_pred CcCCCcchhhhcCCCCCCEEEccCCeecccCchhHhhhccCCccEEEccCCcCcccCchhhhcCCCCCeEEcCCCccCCC
Q 038636 307 NLLRGHLPINLVSLRNLTSINLARNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWGNLPPEFSSSITRIRGSLAKNCLSCP 386 (409)
Q Consensus 307 n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~l~~N~l~~p 386 (409)
|.+++..|..|..+++|++|+|++|++++..|..|..+.. |++|+|++|.+++..|..|..+++|+.|++++|++.|.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~--L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSS--VRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTT--CSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCcc--CCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 9999888888999999999999999999998999988866 99999999999988899999999999999999999444
Q ss_pred ch
Q 038636 387 ET 388 (409)
Q Consensus 387 ~~ 388 (409)
..
T Consensus 169 c~ 170 (220)
T 2v70_A 169 CY 170 (220)
T ss_dssp GG
T ss_pred Cc
Confidence 43
No 105
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.83 E-value=5.5e-22 Score=201.28 Aligned_cols=155 Identities=10% Similarity=-0.011 Sum_probs=113.4
Q ss_pred CCCcEEEeecccCCCCCc-ccC-CCCCCCEEEee--C----CcCCCC-----CchhhcCCCCCcEEEccCCcCCccCCCC
Q 038636 226 TSLRTLSLSHNLLSGHLS-SLR-NLVNLKSLDLS--S----NRFTGA-----ISHEVLTLPQVVSIDVSVNRLTAIEMTT 292 (409)
Q Consensus 226 ~~L~~L~l~~n~l~~~~~-~l~-~l~~L~~L~l~--~----n~l~~~-----~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 292 (409)
++|+.|.+..|.+++... .+. .+++|+.|+++ + +.+++. ++..+..+++|+.|++++ .+++..+..
T Consensus 372 ~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~ 450 (594)
T 2p1m_B 372 PKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEY 450 (594)
T ss_dssp TTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHH
T ss_pred hhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHH
Confidence 678888777777765443 333 58899999999 4 455532 122366789999999977 666644444
Q ss_pred CCC-CCCCCEEEccCCcCCCcchhhh-cCCCCCCEEEccCCeecccCchhHh-hhccCCccEEEccCCcCcccCchhh-h
Q 038636 293 LSG-DTHLQELDVQGNLLRGHLPINL-VSLRNLTSINLARNQLSGHIPKVYG-AKLGSSWRSLFLDHNFLWGNLPPEF-S 368 (409)
Q Consensus 293 ~~~-~~~L~~L~Ls~n~l~~~~p~~l-~~l~~L~~L~L~~N~l~~~~p~~~~-~~~~~~L~~L~L~~N~l~~~~p~~~-~ 368 (409)
+.. +++|+.|++++|.+++..+..+ ..+++|+.|+|++|.+++..+..+. .++. |++|++++|.++......+ .
T Consensus 451 l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~--L~~L~l~~~~~~~~~~~~l~~ 528 (594)
T 2p1m_B 451 IGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLET--MRSLWMSSCSVSFGACKLLGQ 528 (594)
T ss_dssp HHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGG--SSEEEEESSCCBHHHHHHHHH
T ss_pred HHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCC--CCEEeeeCCCCCHHHHHHHHH
Confidence 444 7899999999999987766555 6799999999999999766554333 3555 9999999999976555555 5
Q ss_pred cCCCCCeEEcCCCcc
Q 038636 369 SSITRIRGSLAKNCL 383 (409)
Q Consensus 369 ~~~~L~~L~l~~N~l 383 (409)
.++.++...+..+..
T Consensus 529 ~lp~l~i~~~~~~~~ 543 (594)
T 2p1m_B 529 KMPKLNVEVIDERGA 543 (594)
T ss_dssp HCTTEEEEEECSSSC
T ss_pred hCCCCEEEEecCCCc
Confidence 678887777777643
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.82 E-value=9.4e-20 Score=161.18 Aligned_cols=152 Identities=18% Similarity=0.208 Sum_probs=119.7
Q ss_pred CEEeCCCCCCCCCCCCCCCCCcEEEeecccCCCCCc-ccCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCC
Q 038636 208 HTLDLDSNQLYGNLPKFPTSLRTLSLSHNLLSGHLS-SLRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLT 286 (409)
Q Consensus 208 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 286 (409)
+.++++++.++.....++++++.|++++|.+++..+ .+..+++|+.|++++|++++..|..|..+++|++|+|++|+++
T Consensus 14 ~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 93 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT 93 (220)
T ss_dssp TEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC
T ss_pred CEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC
Confidence 578888888775544666788888888888887766 7788888888888888888777888888888888888888888
Q ss_pred ccCCCCCCCCCCCCEEEccCCcCCCcchhhhcCCCCCCEEEccCCeecccCchhHhhhccCCccEEEccCCcCcc
Q 038636 287 AIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLTSINLARNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWG 361 (409)
Q Consensus 287 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~ 361 (409)
.++...+..+++|++|+|++|.+++..|..|..+++|+.|+|++|++++..+..+..+.. |++|+|++|.+..
T Consensus 94 ~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~--L~~L~L~~N~~~c 166 (220)
T 2v9t_B 94 ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRA--IQTMHLAQNPFIC 166 (220)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT--CCEEECCSSCEEC
T ss_pred ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCC--CCEEEeCCCCcCC
Confidence 766666777888888888888888777777888888888888888888766666766655 8888888887764
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.82 E-value=2.2e-19 Score=158.86 Aligned_cols=130 Identities=22% Similarity=0.267 Sum_probs=64.4
Q ss_pred CCcCEEeCCCCCCCCCCCC-C--CCCCcEEEeecccCCCCCc-ccCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEc
Q 038636 205 WQLHTLDLDSNQLYGNLPK-F--PTSLRTLSLSHNLLSGHLS-SLRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDV 280 (409)
Q Consensus 205 ~~L~~L~l~~n~l~~~~~~-~--~~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 280 (409)
++|+.|++++|.+++..+. + .++|++|++++|.+++..+ .|..+++|++|++++|++++..+..|..+++|++|+|
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 3455555555555443331 1 1445555555555554444 4555555555555555555443334445555555555
Q ss_pred cCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchhhhcCCCCCCEEEccCCeec
Q 038636 281 SVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLTSINLARNQLS 334 (409)
Q Consensus 281 ~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~ 334 (409)
++|++++..+..+..+++|++|+|++|.+++..+..+..+++|+.|+|++|.+.
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 555555544444555555555555555555444444555555555555555544
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=1.8e-19 Score=166.27 Aligned_cols=188 Identities=24% Similarity=0.292 Sum_probs=140.2
Q ss_pred CCEEeccCCcCCCCCchhhcCCCCCCeEEeecCcCCCCCCCCCCCCCcCEEeCCCCCCCCCCC-CCCCCCcEEEeecccC
Q 038636 160 LQTLDLSHNSLSGIIPAQLSGLRSLTALRLSHNAFSGKIPSLTGAWQLHTLDLDSNQLYGNLP-KFPTSLRTLSLSHNLL 238 (409)
Q Consensus 160 L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~L~~L~l~~n~l 238 (409)
+..+.+..+.+++. ..+..+++|++|++++|.+. .++.+..+++|++|++++|.+++..+ ...++|++|++++|.+
T Consensus 26 ~~~~~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~-~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l 102 (291)
T 1h6t_A 26 TIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIK-SVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKV 102 (291)
T ss_dssp HHHHHTTCSCTTSE--ECHHHHHTCCEEECTTSCCC-CCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCC
T ss_pred HHHHHhcCCCcccc--cchhhcCcccEEEccCCCcc-cChhHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcC
Confidence 33445566666543 23457788999999999887 45678888999999999998887655 3347788888888888
Q ss_pred CCCCcccCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchhhhc
Q 038636 239 SGHLSSLRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLV 318 (409)
Q Consensus 239 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~ 318 (409)
++. +.+..+++|++|++++|++++. ..+..+++|++|++++|++++. +.+..+++|++|++++|.+++..| +.
T Consensus 103 ~~~-~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~ 175 (291)
T 1h6t_A 103 KDL-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LA 175 (291)
T ss_dssp CCG-GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GT
T ss_pred CCC-hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hc
Confidence 763 4577888888888888888754 4577788888888888888764 567778888888888888886544 77
Q ss_pred CCCCCCEEEccCCeecccCchhHhhhccCCccEEEccCCcCcc
Q 038636 319 SLRNLTSINLARNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWG 361 (409)
Q Consensus 319 ~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~ 361 (409)
.+++|+.|++++|++++ +|. +..+.. |+.|++++|.++.
T Consensus 176 ~l~~L~~L~L~~N~i~~-l~~-l~~l~~--L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 176 GLTKLQNLYLSKNHISD-LRA-LAGLKN--LDVLELFSQECLN 214 (291)
T ss_dssp TCTTCCEEECCSSCCCB-CGG-GTTCTT--CSEEEEEEEEEEC
T ss_pred CCCccCEEECCCCcCCC-Chh-hccCCC--CCEEECcCCcccC
Confidence 78888888888888874 343 566654 8888888888774
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.81 E-value=1.5e-19 Score=182.62 Aligned_cols=170 Identities=32% Similarity=0.405 Sum_probs=112.5
Q ss_pred CCcEEEEEccCCCCCCCCccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEe
Q 038636 85 TSRITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLD 164 (409)
Q Consensus 85 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~ 164 (409)
..+++.|+++++.+... +.+..+++|+.|+|++|.+++..| +..+++|++|+|++|.+.+ +| .+..+++|++|+
T Consensus 42 L~~L~~L~l~~n~i~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLS 115 (605)
T ss_dssp HTTCCCCBCTTCCCCCC--TTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEE
T ss_pred CCCCCEEECcCCCCCCC--hHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEE
Confidence 34566677777766553 246677777777777777765433 6677777777777777763 33 566777777777
Q ss_pred ccCCcCCCCCchhhcCCCCCCeEEeecCcCCCCCCCCCCCCCcCEEeCCCCCCCCCCC-CCCCCCcEEEeecccCCCCCc
Q 038636 165 LSHNSLSGIIPAQLSGLRSLTALRLSHNAFSGKIPSLTGAWQLHTLDLDSNQLYGNLP-KFPTSLRTLSLSHNLLSGHLS 243 (409)
Q Consensus 165 l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~L~~L~l~~n~l~~~~~ 243 (409)
|++|.+.+. +.+..+++|+.|+|++|.+++. +.+..+++|+.|+|++|.+.+..| ...++|+.|+|++|.+++. +
T Consensus 116 Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l-~ 191 (605)
T 1m9s_A 116 LEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDL-R 191 (605)
T ss_dssp CTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBC-G
T ss_pred ecCCCCCCC--ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCCC-h
Confidence 777777642 3466777777777777777643 556677777777777777766655 2236677777777777654 4
Q ss_pred ccCCCCCCCEEEeeCCcCCCC
Q 038636 244 SLRNLVNLKSLDLSSNRFTGA 264 (409)
Q Consensus 244 ~l~~l~~L~~L~l~~n~l~~~ 264 (409)
.+..+++|+.|+|++|.+.+.
T Consensus 192 ~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 192 ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp GGTTCTTCSEEECCSEEEECC
T ss_pred HHccCCCCCEEEccCCcCcCC
Confidence 566677777777777776643
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.81 E-value=4.7e-19 Score=157.66 Aligned_cols=154 Identities=25% Similarity=0.247 Sum_probs=99.5
Q ss_pred cCEEeCCCCCCCCCCCCCCCCCcEEEeecccCCCCCc-ccCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcC
Q 038636 207 LHTLDLDSNQLYGNLPKFPTSLRTLSLSHNLLSGHLS-SLRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRL 285 (409)
Q Consensus 207 L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 285 (409)
-+.++.+++.+......++++|++|++++|.+++..+ .+..+++|++|++++|++++..+..|..+++|++|+|++|++
T Consensus 21 ~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l 100 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL 100 (229)
T ss_dssp TTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcC
Confidence 4567777666654444555667777777777766655 566667777777777776655555566667777777777777
Q ss_pred CccCCCCCCCCCCCCEEEccCCcCCCcchhhhcCCCCCCEEEccCCeecccCchhHhhhccCCccEEEccCCcCcccC
Q 038636 286 TAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLTSINLARNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWGNL 363 (409)
Q Consensus 286 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~ 363 (409)
+++....+..+++|++|++++|+++ .+|..+..+++|++|+|++|++++..+..+..+.. |++|++++|.+.+..
T Consensus 101 ~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~--L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 101 TVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSS--LTHAYLFGNPWDCEC 175 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTT--CCEEECTTSCBCTTB
T ss_pred CccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCC--CCEEEeeCCCccCCc
Confidence 6655555666667777777777666 56666666666777777777666555555555544 666666666666443
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.80 E-value=9.2e-19 Score=155.79 Aligned_cols=153 Identities=20% Similarity=0.130 Sum_probs=116.7
Q ss_pred CCcEEEeecccCCCCCcccCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccC
Q 038636 227 SLRTLSLSHNLLSGHLSSLRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQG 306 (409)
Q Consensus 227 ~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~ 306 (409)
+.+.++++++.++..+..+. ++|++|++++|.+++..|..+..+++|++|+|++|+++.++...+..+++|+.|+|++
T Consensus 20 s~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred eCCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 45667777777766554443 6788888888888877777788888888888888888776666677788888888888
Q ss_pred CcCCCcchhhhcCCCCCCEEEccCCeecccCchhHhhhccCCccEEEccCCcCcccCchhhhcCCCCCeEEcCCCccC
Q 038636 307 NLLRGHLPINLVSLRNLTSINLARNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWGNLPPEFSSSITRIRGSLAKNCLS 384 (409)
Q Consensus 307 n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~l~~N~l~ 384 (409)
|++++..+..+..+++|++|+|++|+++ .+|..+..+.. |++|+|++|++++..+..+..+++|+.|++++|++.
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~--L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTH--LTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTT--CSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCC--CCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 8888666666777888888888888887 67777776655 888888888888555566777888888888888873
No 112
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.80 E-value=8.5e-21 Score=196.28 Aligned_cols=260 Identities=21% Similarity=0.184 Sum_probs=111.2
Q ss_pred ChhhHHHHHHHHhhCCCCCCCCCCCCCCCCCCCCCCCCCCCceeeeecCCCCCCCCCcEEEEEccCCCCCCCCccccCCC
Q 038636 30 LATDTQVLRLLKRSIDPNTIPRSSFLDSWDFKLDPCESSGGQFLGILCSIPSDNSTSRITAIYLDSSGYDGFLTPSIGNL 109 (409)
Q Consensus 30 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~w~~~~~~C~~~~~~w~gv~c~~~~~~~~~~v~~L~L~~~~l~~~~~~~l~~l 109 (409)
...+++++.++...... ..+.....|.....++.. |.+..+. .++++.|+|.++.+... +..+...
T Consensus 130 ~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~----~~~~~~s------~~~~~~l~L~~n~~~~~-~~~~l~~ 195 (727)
T 4b8c_D 130 VDCTKQALMEMADTLTD---SKTAKKQQPTGDSTPSGT----ATNSAVS------TPLTPKIELFANGKDEA-NQALLQH 195 (727)
T ss_dssp --CCCHHHHHHHHHHHH---HHTTC-------------------------------------------------------
T ss_pred cccchhhhhhhhhhccc---ccCcccCCCcCCCCcccc----CCCceec------CCccceEEeeCCCCCcc-hhhHhhc
Confidence 34567888888876521 111223456443333332 6777665 46789999998887764 3333222
Q ss_pred CCCcEEE-----ccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEeccCCcCCCCCchhhcCCCCC
Q 038636 110 TELTTLD-----LSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSL 184 (409)
Q Consensus 110 ~~L~~L~-----L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L 184 (409)
..|+.+. ++.|.+. ..|..+..++.|+.|+|++|.+. .+|..+.++++|++|+|++|.++ .+|..|+++++|
T Consensus 196 l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L 272 (727)
T 4b8c_D 196 KKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNL 272 (727)
T ss_dssp ---------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTC
T ss_pred CccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCC
Confidence 2333322 2233333 45677788888888888888887 77877778888888888888888 778888888888
Q ss_pred CeEEeecCcCCCCCCC-CCCCCCcCEEeCCCCCCCCCCCCCCCCCcEEEeecccCCCCCcccCCCCCCCEEEeeCCcCCC
Q 038636 185 TALRLSHNAFSGKIPS-LTGAWQLHTLDLDSNQLYGNLPKFPTSLRTLSLSHNLLSGHLSSLRNLVNLKSLDLSSNRFTG 263 (409)
Q Consensus 185 ~~L~L~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~ 263 (409)
++|+|++|.++ .+|. ++.+++|++|+|++|.++ .+| ..|+.+++|+.|+|++|.+++
T Consensus 273 ~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp--------------------~~~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 273 RVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLP--------------------WEFGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp CEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCC--------------------SSTTSCTTCCCEECTTSCCCS
T ss_pred CEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccC--------------------hhhhcCCCccEEeCCCCccCC
Confidence 88888888888 5555 777777777777776654 222 256666777777777777777
Q ss_pred CCchhhcCCCC-CcEEEccCCcCCccCCCCCCCCCCCCEEEccCC--------cCCCcchhhhcCCCCCCEEEccCCeec
Q 038636 264 AISHEVLTLPQ-VVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGN--------LLRGHLPINLVSLRNLTSINLARNQLS 334 (409)
Q Consensus 264 ~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n--------~l~~~~p~~l~~l~~L~~L~L~~N~l~ 334 (409)
.+|..+..+.. +..+++++|.+++..+. .|+.|+++.| .+.+..+..+..+..++...+++|.+.
T Consensus 331 ~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 331 QFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C-----------------------------------------CCC
T ss_pred CChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 66666644321 12356677777663332 4555555555 333333444455566666677777664
No 113
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.78 E-value=3.5e-22 Score=200.70 Aligned_cols=188 Identities=24% Similarity=0.197 Sum_probs=89.3
Q ss_pred cCCCCCcEEeccCccCCccCchhccCCCCCCEEeccCCc-------------CCCCCchhhcCCCCCCeEE-eecCcCCC
Q 038636 131 TDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHNS-------------LSGIIPAQLSGLRSLTALR-LSHNAFSG 196 (409)
Q Consensus 131 ~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~-------------l~~~~p~~l~~l~~L~~L~-L~~n~l~~ 196 (409)
..+++|+.|+|++|.+. .+|..++++++|+.|++++|. ..+..|..++.+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 45666667777777665 667777777777777665553 3334444455555555554 3333221
Q ss_pred CCCCCCCCCCcCEEeCCCCCCCCCCCCCCCCCcEEEeecccCCCCCcccCCCCCCCEEEeeCCcCCCCCchhhcCCCCCc
Q 038636 197 KIPSLTGAWQLHTLDLDSNQLYGNLPKFPTSLRTLSLSHNLLSGHLSSLRNLVNLKSLDLSSNRFTGAISHEVLTLPQVV 276 (409)
Q Consensus 197 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 276 (409)
.|+.+.+.+|.+....+ ..|+.|++++|.+++. |.++.+++|+.|++++|.++ .+|..++.+++|+
T Consensus 424 ---------~L~~l~l~~n~i~~l~~---~~L~~L~Ls~n~l~~l-p~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~ 489 (567)
T 1dce_A 424 ---------DLRSKFLLENSVLKMEY---ADVRVLHLAHKDLTVL-CHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLE 489 (567)
T ss_dssp ---------HHHHHHHHHHHHHHHHH---TTCSEEECTTSCCSSC-CCGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCC
T ss_pred ---------hhhhhhhhcccccccCc---cCceEEEecCCCCCCC-cCccccccCcEeecCccccc-ccchhhhcCCCCC
Confidence 12222222222221110 1244444444444432 22444455555555555554 4444455555555
Q ss_pred EEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcc-hhhhcCCCCCCEEEccCCeeccc
Q 038636 277 SIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHL-PINLVSLRNLTSINLARNQLSGH 336 (409)
Q Consensus 277 ~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~~N~l~~~ 336 (409)
.|+|++|+++++ + .++.+++|+.|+|++|.+++.. |..++.+++|+.|+|++|.+++.
T Consensus 490 ~L~Ls~N~l~~l-p-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 490 VLQASDNALENV-D-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp EEECCSSCCCCC-G-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred EEECCCCCCCCC-c-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCC
Confidence 555555555442 1 4444444444444444444433 44444444444444444444433
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.78 E-value=2.3e-18 Score=149.52 Aligned_cols=150 Identities=16% Similarity=0.146 Sum_probs=123.9
Q ss_pred CCCcEEEeecccCCCCCcccCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEcc
Q 038636 226 TSLRTLSLSHNLLSGHLSSLRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQ 305 (409)
Q Consensus 226 ~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls 305 (409)
++|+.|++++|.++.. +.+..+++|++|++++|.++. +..+..+++|++|++++|++++..+..+..+++|++|+++
T Consensus 44 ~~L~~L~l~~n~i~~l-~~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 44 NSLTYITLANINVTDL-TGIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp HTCCEEEEESSCCSCC-TTGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred CCccEEeccCCCccCh-HHHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 5677777777777743 367788899999999996653 3478889999999999999998777888899999999999
Q ss_pred CCcCCCcchhhhcCCCCCCEEEccCCeecccCchhHhhhccCCccEEEccCCcCcccCchhhhcCCCCCeEEcCCCcc
Q 038636 306 GNLLRGHLPINLVSLRNLTSINLARNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWGNLPPEFSSSITRIRGSLAKNCL 383 (409)
Q Consensus 306 ~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~l~~N~l 383 (409)
+|.+++..|..++.+++|++|++++|++.+.+| .+..++. |++|++++|.+++ ++ .+..+++|+.|++++|++
T Consensus 121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~--L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPE--LKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSS--CCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC--
T ss_pred CCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCC--CCEEECCCCCCcC-hH-HhccCCCCCEEEeeCccc
Confidence 999998888899999999999999998444666 5777765 9999999999985 55 688999999999999976
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.78 E-value=1.6e-18 Score=165.03 Aligned_cols=100 Identities=25% Similarity=0.228 Sum_probs=57.5
Q ss_pred cEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhcc-CCCCCCEEeccCCcCCCCCchhhcCCCCCCeEEeec
Q 038636 113 TTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGIT-RLKKLQTLDLSHNSLSGIIPAQLSGLRSLTALRLSH 191 (409)
Q Consensus 113 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~-~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~ 191 (409)
++++++++.++ .+|..+. +.+++|+|++|.+++..+..+. ++++|++|++++|.+++..+..|..+++|++|+|++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 46677777766 4555443 3466777777777655445555 666677777766666655555566666666666666
Q ss_pred CcCCCCCCC-CCCCCCcCEEeCCCC
Q 038636 192 NAFSGKIPS-LTGAWQLHTLDLDSN 215 (409)
Q Consensus 192 n~l~~~~~~-~~~l~~L~~L~l~~n 215 (409)
|++++..+. +..+++|++|++++|
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N 122 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNN 122 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCC
Confidence 665543332 344444444444333
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.77 E-value=1e-18 Score=158.90 Aligned_cols=169 Identities=21% Similarity=0.308 Sum_probs=92.5
Q ss_pred CCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEeccCCcCCCCCchhhcCCCCCCeEE
Q 038636 109 LTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTALR 188 (409)
Q Consensus 109 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~ 188 (409)
+.+++.++++++.+++ ++ .+..+++|++|++++|.++ .+| .+..+++|++|++++|.+++.. . +..+++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~-~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLS-P-LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCG-G-GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCCh-h-hccCCCCCEEE
Confidence 4445555666666653 22 4556666666666666665 444 4566666666666666666432 2 55666666666
Q ss_pred eecCcCCCCCCCCCCCCCcCEEeCCCCCCCCCCCCCCCCCcEEEeecccCCCCCcccCCCCCCCEEEeeCCcCCCCCchh
Q 038636 189 LSHNAFSGKIPSLTGAWQLHTLDLDSNQLYGNLPKFPTSLRTLSLSHNLLSGHLSSLRNLVNLKSLDLSSNRFTGAISHE 268 (409)
Q Consensus 189 L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 268 (409)
+++|++++ +|.+.. ++|++|+++ +|.+++. +.+..+++|+.|++++|++++. + .
T Consensus 92 L~~N~l~~-l~~~~~-~~L~~L~L~---------------------~N~l~~~-~~l~~l~~L~~L~Ls~N~i~~~-~-~ 145 (263)
T 1xeu_A 92 VNRNRLKN-LNGIPS-ACLSRLFLD---------------------NNELRDT-DSLIHLKNLEILSIRNNKLKSI-V-M 145 (263)
T ss_dssp CCSSCCSC-CTTCCC-SSCCEEECC---------------------SSCCSBS-GGGTTCTTCCEEECTTSCCCBC-G-G
T ss_pred CCCCccCC-cCcccc-CcccEEEcc---------------------CCccCCC-hhhcCcccccEEECCCCcCCCC-h-H
Confidence 66665553 333222 344444444 4443332 2455566666666666666543 2 4
Q ss_pred hcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCC
Q 038636 269 VLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRG 311 (409)
Q Consensus 269 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~ 311 (409)
+..+++|++|++++|++++. ..+..+++|+.|++++|.+++
T Consensus 146 l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 146 LGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp GGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred HccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence 55566666666666666553 445555555555555555553
No 117
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.76 E-value=3.4e-18 Score=148.47 Aligned_cols=131 Identities=21% Similarity=0.256 Sum_probs=106.4
Q ss_pred CCcEEEEEccCCCCCCCCccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEe
Q 038636 85 TSRITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLD 164 (409)
Q Consensus 85 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~ 164 (409)
..+++.|+++++.++. +| .+..+++|++|++++|.++ .+..+..+++|++|++++|.+++..|..++.+++|++|+
T Consensus 43 l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVTD-LT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCSC-CT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCccC-hH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 3568888999888874 44 5888899999999988665 334788899999999999998877788888899999999
Q ss_pred ccCCcCCCCCchhhcCCCCCCeEEeecCcCCCCCCCCCCCCCcCEEeCCCCCCCC
Q 038636 165 LSHNSLSGIIPAQLSGLRSLTALRLSHNAFSGKIPSLTGAWQLHTLDLDSNQLYG 219 (409)
Q Consensus 165 l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~ 219 (409)
+++|.+++..|..+..+++|++|++++|.+.+.++.+..+++|++|++++|.+++
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~ 173 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHD 173 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCC
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcC
Confidence 9999988777888888899999999998844466677778888888888777664
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.76 E-value=8.8e-22 Score=197.83 Aligned_cols=203 Identities=20% Similarity=0.127 Sum_probs=145.5
Q ss_pred cCCCCCCEEeccCCcCCCCCchhhcCCCCCCeEEeecCc-------------CCCCCCC-CCCCCCcCEEe-CCCCCCCC
Q 038636 155 TRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTALRLSHNA-------------FSGKIPS-LTGAWQLHTLD-LDSNQLYG 219 (409)
Q Consensus 155 ~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~-------------l~~~~~~-~~~l~~L~~L~-l~~n~l~~ 219 (409)
..++.|+.|++++|.++ .+|..++++++|+.|++++|. ..+.+|. ++.+++|+.|+ ++.|.+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~-- 422 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL-- 422 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH--
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc--
Confidence 56788888888888886 678888888888888886654 3333443 55566666665 444432
Q ss_pred CCCCCCCCCcEEEeecccCCCCCcccCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCC
Q 038636 220 NLPKFPTSLRTLSLSHNLLSGHLSSLRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHL 299 (409)
Q Consensus 220 ~~~~~~~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L 299 (409)
..|+.+.+.+|.++...+ ..|+.|++++|.+++ +|. ++.+++|+.|+|++|.++. .+..++.+++|
T Consensus 423 ------~~L~~l~l~~n~i~~l~~-----~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L 488 (567)
T 1dce_A 423 ------DDLRSKFLLENSVLKMEY-----ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLRA-LPPALAALRCL 488 (567)
T ss_dssp ------HHHHHHHHHHHHHHHHHH-----TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCCC-CCGGGGGCTTC
T ss_pred ------chhhhhhhhcccccccCc-----cCceEEEecCCCCCC-CcC-ccccccCcEeecCcccccc-cchhhhcCCCC
Confidence 234555556665554322 247888888888885 555 8888888888888888885 45577888888
Q ss_pred CEEEccCCcCCCcchhhhcCCCCCCEEEccCCeecccC-chhHhhhccCCccEEEccCCcCcccCch---hhhcCCCCCe
Q 038636 300 QELDVQGNLLRGHLPINLVSLRNLTSINLARNQLSGHI-PKVYGAKLGSSWRSLFLDHNFLWGNLPP---EFSSSITRIR 375 (409)
Q Consensus 300 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~-p~~~~~~~~~~L~~L~L~~N~l~~~~p~---~~~~~~~L~~ 375 (409)
+.|+|++|.+++ +| .++.+++|+.|+|++|++++.. |..++.++. |+.|+|++|.+++..|. .+..+++|+.
T Consensus 489 ~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~--L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~ 564 (567)
T 1dce_A 489 EVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPR--LVLLNLQGNSLCQEEGIQERLAEMLPSVSS 564 (567)
T ss_dssp CEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTT--CCEEECTTSGGGGSSSCTTHHHHHCTTCSE
T ss_pred CEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCC--CCEEEecCCcCCCCccHHHHHHHHCcccCc
Confidence 888888888885 66 7888888888888888888776 888887765 88888888888865442 2344777887
Q ss_pred EEc
Q 038636 376 GSL 378 (409)
Q Consensus 376 L~l 378 (409)
|++
T Consensus 565 L~l 567 (567)
T 1dce_A 565 ILT 567 (567)
T ss_dssp EEC
T ss_pred cCC
Confidence 764
No 119
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.76 E-value=4.9e-18 Score=146.81 Aligned_cols=172 Identities=22% Similarity=0.237 Sum_probs=128.1
Q ss_pred CEEeCCCCCCCCCCCCCCCCCcEEEeecccCCCCCc--ccCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcC
Q 038636 208 HTLDLDSNQLYGNLPKFPTSLRTLSLSHNLLSGHLS--SLRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRL 285 (409)
Q Consensus 208 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 285 (409)
+++++++|+++.....++.++++|++++|.+++..+ .+..+++|++|++++|++++..|..|..+++|++|+|++|++
T Consensus 11 ~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 90 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90 (192)
T ss_dssp TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCC
T ss_pred CEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcC
Confidence 567777777754333555688888888888887766 388899999999999999988899999999999999999999
Q ss_pred CccCCCCCCCCCCCCEEEccCCcCCCcchhhhcCCCCCCEEEccCCeecccCchhHhhhccCCccEEEccCCcCcccCch
Q 038636 286 TAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLTSINLARNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWGNLPP 365 (409)
Q Consensus 286 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~p~ 365 (409)
++..+..+..+++|++|++++|++++..|..+..+++|++|+|++|.+.+..+..... .. ++...+..+......|.
T Consensus 91 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~-~~--l~~~~~~~~~~~C~~P~ 167 (192)
T 1w8a_A 91 KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA-EW--LRKKSLNGGAARCGAPS 167 (192)
T ss_dssp CEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH-HH--HHHHCCSGGGCBBCSST
T ss_pred CccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHH-HH--HHHcCCCCCCCCCCCCh
Confidence 9988778889999999999999999888999999999999999999998876632211 01 22223444444444454
Q ss_pred hhhcCCCCCeEEcCCCccCC
Q 038636 366 EFSSSITRIRGSLAKNCLSC 385 (409)
Q Consensus 366 ~~~~~~~L~~L~l~~N~l~~ 385 (409)
.+. .....++..+.+.|
T Consensus 168 ~l~---~~~l~~l~~~~~~C 184 (192)
T 1w8a_A 168 KVR---DVQIKDLPHSEFKC 184 (192)
T ss_dssp TTT---TSBGGGSCTTTCCC
T ss_pred HHc---CCChhhCcHhhcCc
Confidence 432 23344455555533
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.76 E-value=9.2e-19 Score=159.14 Aligned_cols=168 Identities=21% Similarity=0.287 Sum_probs=129.4
Q ss_pred CcEEEEEccCCCCCCCCccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEec
Q 038636 86 SRITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDL 165 (409)
Q Consensus 86 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l 165 (409)
.+++.++++++.+++.. .+..+++|++|++++|.++ .++ .+..+++|++|++++|.+++ +|. +.++++|++|++
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEEC
T ss_pred HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEEC
Confidence 44566778888887653 5788999999999999998 455 68999999999999999995 454 999999999999
Q ss_pred cCCcCCCCCchhhcCCCCCCeEEeecCcCCCCCCCCCCCCCcCEEeCCCCCCCCCCCCCCCCCcEEEeecccCCCCCccc
Q 038636 166 SHNSLSGIIPAQLSGLRSLTALRLSHNAFSGKIPSLTGAWQLHTLDLDSNQLYGNLPKFPTSLRTLSLSHNLLSGHLSSL 245 (409)
Q Consensus 166 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~l 245 (409)
++|.+++ +|. +.. ++|++|++++|.+++ ++.+..+++|++|++++|++++. +.+
T Consensus 93 ~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~-~~~l~~l~~L~~L~Ls~N~i~~~----------------------~~l 146 (263)
T 1xeu_A 93 NRNRLKN-LNG-IPS-ACLSRLFLDNNELRD-TDSLIHLKNLEILSIRNNKLKSI----------------------VML 146 (263)
T ss_dssp CSSCCSC-CTT-CCC-SSCCEEECCSSCCSB-SGGGTTCTTCCEEECTTSCCCBC----------------------GGG
T ss_pred CCCccCC-cCc-ccc-CcccEEEccCCccCC-ChhhcCcccccEEECCCCcCCCC----------------------hHH
Confidence 9999986 443 333 999999999999985 56688888888888888877643 234
Q ss_pred CCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCc
Q 038636 246 RNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTA 287 (409)
Q Consensus 246 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 287 (409)
..+++|+.|++++|++++. ..+..+++|+.|++++|.++.
T Consensus 147 ~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 147 GFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp GGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred ccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence 4555666666666666644 445566666666666666655
No 121
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.73 E-value=1.5e-17 Score=140.44 Aligned_cols=138 Identities=17% Similarity=0.094 Sum_probs=112.6
Q ss_pred CCCCCCEEEeeCCcCC-CCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchhhhcCCCCCCE
Q 038636 247 NLVNLKSLDLSSNRFT-GAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLTS 325 (409)
Q Consensus 247 ~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 325 (409)
..++|+.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3467888888888887 67777778888899999999988875 77788889999999999998778888888999999
Q ss_pred EEccCCeecccC-chhHhhhccCCccEEEccCCcCcccCc---hhhhcCCCCCeEEcCCCcc-CCCch
Q 038636 326 INLARNQLSGHI-PKVYGAKLGSSWRSLFLDHNFLWGNLP---PEFSSSITRIRGSLAKNCL-SCPET 388 (409)
Q Consensus 326 L~L~~N~l~~~~-p~~~~~~~~~~L~~L~L~~N~l~~~~p---~~~~~~~~L~~L~l~~N~l-~~p~~ 388 (409)
|++++|++++.. +..+..++. |++|++++|.+++..+ ..+..+++|++|++++|.+ ++|..
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~--L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 165 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLEC--LKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS 165 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSC--CCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred EeccCCccCcchhHHHHhcCCC--CCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence 999999998642 266777655 9999999999985544 4788899999999999988 66653
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.72 E-value=2.9e-17 Score=141.92 Aligned_cols=132 Identities=25% Similarity=0.278 Sum_probs=107.0
Q ss_pred cEEEeecccCCCCCcccCCCCCCCEEEeeCCcCCCCCch-hhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCC
Q 038636 229 RTLSLSHNLLSGHLSSLRNLVNLKSLDLSSNRFTGAISH-EVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGN 307 (409)
Q Consensus 229 ~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n 307 (409)
+.+++++|.++..+..+.. ++++|++++|++++..+. .+..+++|++|++++|++++..+..+..+++|++|+|++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 6788888888655444433 788888988888866654 4788888888888888888877778888888888888888
Q ss_pred cCCCcchhhhcCCCCCCEEEccCCeecccCchhHhhhccCCccEEEccCCcCcccCc
Q 038636 308 LLRGHLPINLVSLRNLTSINLARNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWGNLP 364 (409)
Q Consensus 308 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~p 364 (409)
++++..|..|..+++|++|+|++|++++..|..+..+.. |++|+|++|.+.+..+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~--L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNS--LTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTT--CCEEECTTCCBCCSGG
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCC--CCEEEeCCCCccCcCc
Confidence 888777777888888888888888888888888877765 8888888888887655
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.71 E-value=3.4e-17 Score=135.39 Aligned_cols=130 Identities=18% Similarity=0.099 Sum_probs=111.3
Q ss_pred CCCCCCEEEeeCCcCC-CCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchhhhcCCCCCCE
Q 038636 247 NLVNLKSLDLSSNRFT-GAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLTS 325 (409)
Q Consensus 247 ~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~ 325 (409)
..++++.|++++|.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 3467889999999988 78888888899999999999999875 77888999999999999999878988888999999
Q ss_pred EEccCCeeccc-CchhHhhhccCCccEEEccCCcCcccCc---hhhhcCCCCCeEEcCC
Q 038636 326 INLARNQLSGH-IPKVYGAKLGSSWRSLFLDHNFLWGNLP---PEFSSSITRIRGSLAK 380 (409)
Q Consensus 326 L~L~~N~l~~~-~p~~~~~~~~~~L~~L~L~~N~l~~~~p---~~~~~~~~L~~L~l~~ 380 (409)
|++++|++++. .+..+..++. |++|++++|.+++..+ ..+..+++|+.|++++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~--L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLEN--LKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTT--CCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred EECCCCcCCChHHHHHHhhCCC--CCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 99999999863 3467777765 9999999999997655 5788999999999864
No 124
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.70 E-value=6.4e-18 Score=174.80 Aligned_cols=177 Identities=25% Similarity=0.291 Sum_probs=120.5
Q ss_pred CCccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEeccCCcCCCCCchhhcC
Q 038636 101 FLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHNSLSGIIPAQLSG 180 (409)
Q Consensus 101 ~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~ 180 (409)
..+..+..++.|+.|+|++|.+. .+|..+.++++|++|+|++|.++ .+|..|+++++|++|+|++|.++ .+|..|+.
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 291 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGS 291 (727)
T ss_dssp -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGG
T ss_pred cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcC
Confidence 34677899999999999999998 78888889999999999999999 89999999999999999999999 78999999
Q ss_pred CCCCCeEEeecCcCCCCCCC-CCCCCCcCEEeCCCCCCCCCCCCCC----CCCcEEEeecccCCCCCcccCCCCCCCEEE
Q 038636 181 LRSLTALRLSHNAFSGKIPS-LTGAWQLHTLDLDSNQLYGNLPKFP----TSLRTLSLSHNLLSGHLSSLRNLVNLKSLD 255 (409)
Q Consensus 181 l~~L~~L~L~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~----~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~ 255 (409)
+++|++|+|++|.++ .+|. ++.+++|++|+|++|.+++.+|... .....+++++|.+++.+| ..|+.|+
T Consensus 292 l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p-----~~l~~l~ 365 (727)
T 4b8c_D 292 CFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP-----HERRFIE 365 (727)
T ss_dssp GTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC-----CC-----
T ss_pred CCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc-----cccceeE
Confidence 999999999999997 5665 9999999999999999999888432 223346788999988776 3455666
Q ss_pred eeCC--------cCCCCCchhhcCCCCCcEEEccCCcCC
Q 038636 256 LSSN--------RFTGAISHEVLTLPQVVSIDVSVNRLT 286 (409)
Q Consensus 256 l~~n--------~l~~~~~~~~~~l~~L~~L~L~~n~l~ 286 (409)
++.| .+.+..+..+..+..++...+++|-+.
T Consensus 366 l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 366 INTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp ------------------------------------CCC
T ss_pred eecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 7666 334444444555666677777777764
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.67 E-value=1.2e-16 Score=134.88 Aligned_cols=133 Identities=23% Similarity=0.215 Sum_probs=105.0
Q ss_pred CCcEEEEEccCCCCC-CCCccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEE
Q 038636 85 TSRITAIYLDSSGYD-GFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTL 163 (409)
Q Consensus 85 ~~~v~~L~L~~~~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L 163 (409)
..+++.|+++++.++ +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++.+|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 467888888888887 67777778888888888888888755 678888888888888888887677777778888888
Q ss_pred eccCCcCCCCC-chhhcCCCCCCeEEeecCcCCCCCC----CCCCCCCcCEEeCCCCCCCC
Q 038636 164 DLSHNSLSGII-PAQLSGLRSLTALRLSHNAFSGKIP----SLTGAWQLHTLDLDSNQLYG 219 (409)
Q Consensus 164 ~l~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~~----~~~~l~~L~~L~l~~n~l~~ 219 (409)
++++|.+++.. +..+..+++|++|++++|.+++..+ .+..+++|++|++++|.+..
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 88888887542 2677888888888888888886665 37778888888888776653
No 126
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.67 E-value=8.3e-16 Score=130.87 Aligned_cols=131 Identities=22% Similarity=0.224 Sum_probs=82.3
Q ss_pred CEEeCCCCCCCCCCCCCCCCCcEEEeecccCCCCCc-ccCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCC
Q 038636 208 HTLDLDSNQLYGNLPKFPTSLRTLSLSHNLLSGHLS-SLRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLT 286 (409)
Q Consensus 208 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 286 (409)
+.+++++++++.....++++|+.|++++|.+++..+ .+..+++|++|++++|.+++..+..+..+++|++|++++|+++
T Consensus 10 ~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~ 89 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ 89 (177)
T ss_dssp TEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCcc
Confidence 455566665554333444566666666666665555 4566677777777777776555555666777777777777776
Q ss_pred ccCCCCCCCCCCCCEEEccCCcCCCcchhhhcCCCCCCEEEccCCeecccCc
Q 038636 287 AIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLTSINLARNQLSGHIP 338 (409)
Q Consensus 287 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 338 (409)
+.++..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..|
T Consensus 90 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 90 SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 6555555666677777777777664444445666667777777776665544
No 127
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.67 E-value=8.6e-17 Score=132.93 Aligned_cols=128 Identities=24% Similarity=0.244 Sum_probs=107.9
Q ss_pred CCcEEEEEccCCCCC-CCCccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEE
Q 038636 85 TSRITAIYLDSSGYD-GFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTL 163 (409)
Q Consensus 85 ~~~v~~L~L~~~~l~-~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L 163 (409)
..+++.|+++++.++ +.+|..+..+++|++|++++|.+++. ..++.+++|++|++++|.+++.+|..+..+++|++|
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 467889999999988 77888888999999999999998865 678889999999999999987788888889999999
Q ss_pred eccCCcCCCC-CchhhcCCCCCCeEEeecCcCCCCCC----CCCCCCCcCEEeCCC
Q 038636 164 DLSHNSLSGI-IPAQLSGLRSLTALRLSHNAFSGKIP----SLTGAWQLHTLDLDS 214 (409)
Q Consensus 164 ~l~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~~----~~~~l~~L~~L~l~~ 214 (409)
++++|.+++. .+..+..+++|++|++++|.+++..+ .+..+++|++|++++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999998863 34778889999999999999887665 277788888888763
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.66 E-value=5.2e-16 Score=134.12 Aligned_cols=128 Identities=23% Similarity=0.251 Sum_probs=91.7
Q ss_pred cEEEeecccCCCCCcccCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCc
Q 038636 229 RTLSLSHNLLSGHLSSLRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNL 308 (409)
Q Consensus 229 ~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~ 308 (409)
+.+++++|.++..+..+. ++|+.|++++|.++ .+|..+..+++|++|++++|+++++.+..|..+++|++|+|++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 567777777775544332 46778888888777 556777777788888888888777666667777777777777777
Q ss_pred CCCcchhhhcCCCCCCEEEccCCeecccCchhHhhhccCCccEEEccCCcCcc
Q 038636 309 LRGHLPINLVSLRNLTSINLARNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWG 361 (409)
Q Consensus 309 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~ 361 (409)
+++..|..|..+++|+.|+|++|++++..+..|..+.. |++|++++|.+..
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~--L~~L~L~~N~~~C 140 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSA--LSHLAIGANPLYC 140 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTT--CCEEECCSSCEEC
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCcc--ccEEEeCCCCeec
Confidence 77666667777777777777777777555555666644 7777777777654
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.66 E-value=1.3e-15 Score=131.52 Aligned_cols=129 Identities=22% Similarity=0.248 Sum_probs=112.6
Q ss_pred CEEeCCCCCCCCCCCCCCCCCcEEEeecccCCCCCcccCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCc
Q 038636 208 HTLDLDSNQLYGNLPKFPTSLRTLSLSHNLLSGHLSSLRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTA 287 (409)
Q Consensus 208 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 287 (409)
+++++++|.++.....+++++++|++++|.++.....+..+++|+.|++++|.+++..+..|..+++|++|+|++|++++
T Consensus 13 ~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~ 92 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92 (193)
T ss_dssp TEEECTTSCCSSCCSCCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred CEEEcCCCCCCcCCCCCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCE
Confidence 56777777776443356678899999999988655588999999999999999998888899999999999999999999
Q ss_pred cCCCCCCCCCCCCEEEccCCcCCCcchhhhcCCCCCCEEEccCCeeccc
Q 038636 288 IEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLTSINLARNQLSGH 336 (409)
Q Consensus 288 ~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 336 (409)
+.+..+..+++|++|+|++|.+++..+..|..+++|+.|++++|.+...
T Consensus 93 i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 93 IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred eCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecC
Confidence 8888899999999999999999966666789999999999999999754
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.65 E-value=1.2e-15 Score=129.77 Aligned_cols=133 Identities=17% Similarity=0.162 Sum_probs=79.8
Q ss_pred CcEEEeecccCCCCCcccCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCC
Q 038636 228 LRTLSLSHNLLSGHLSSLRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGN 307 (409)
Q Consensus 228 L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n 307 (409)
.+.++++++.++..+..+ .++|+.|++++|++++..+..+..+++|++|++++|++++.++..+..+++|++|++++|
T Consensus 9 ~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 355666666665543322 246666677666666555555666666666666666666655445566666666666666
Q ss_pred cCCCcchhhhcCCCCCCEEEccCCeecccCchhHhhhccCCccEEEccCCcCcccCc
Q 038636 308 LLRGHLPINLVSLRNLTSINLARNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWGNLP 364 (409)
Q Consensus 308 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~p 364 (409)
.+++..+..+..+++|++|++++|++++..+..+..+.. |++|++++|.+.+..|
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~--L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTS--LQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT--CCEEECCSSCBCCCHH
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcc--cCEEEecCCCeeccCc
Confidence 666555555566666666666666666444444444433 6666666666665443
No 131
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.64 E-value=1.3e-16 Score=149.70 Aligned_cols=260 Identities=14% Similarity=0.120 Sum_probs=151.3
Q ss_pred CCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccC--------CCCCCEEeccCCcCCCCCchhhcC
Q 038636 109 LTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITR--------LKKLQTLDLSHNSLSGIIPAQLSG 180 (409)
Q Consensus 109 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~--------l~~L~~L~l~~n~l~~~~p~~l~~ 180 (409)
+++|+.|||++|.+.. ....-+.++.++.+.+..|.+. +..|.+ +++|+.+++.+ .++..-+..|.+
T Consensus 48 l~~L~~LdLs~n~i~~-~~~~~~~~~~~~~~~~~~~~I~---~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~ 122 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKM-YSGKAGTYPNGKFYIYMANFVP---AYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKG 122 (329)
T ss_dssp CTTCCEEEEEEEEECC-EEESSSSSGGGCCEEECTTEEC---TTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTT
T ss_pred hccCeEEecCcceeEE-ecCccccccccccccccccccC---HHHhcccccccccccCCCcEEECCc-cccchhHHHhhc
Confidence 5666777777666651 0000112222333443333221 123444 77777777777 666555556777
Q ss_pred CCCCCeEEeecCcCCCCCCC-CCCCCCcCEEeCCCCCCC---CCCC----CCCCCCc-EEEeecccC-CCCCc-ccCCCC
Q 038636 181 LRSLTALRLSHNAFSGKIPS-LTGAWQLHTLDLDSNQLY---GNLP----KFPTSLR-TLSLSHNLL-SGHLS-SLRNLV 249 (409)
Q Consensus 181 l~~L~~L~L~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~---~~~~----~~~~~L~-~L~l~~n~l-~~~~~-~l~~l~ 249 (409)
+++|+.+++.+|.+....+. |..+.++..+....+... ..+. .-...|+ .+.+..... ..... .-....
T Consensus 123 ~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~ 202 (329)
T 3sb4_A 123 CDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPR 202 (329)
T ss_dssp CTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGG
T ss_pred CcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCcc
Confidence 77777777777776633222 555555655555442110 0000 0012233 222221110 00000 111234
Q ss_pred CCCEEEeeCCcCCCCCchhhc-CCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchhhhcCCCCCC-EEE
Q 038636 250 NLKSLDLSSNRFTGAISHEVL-TLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLT-SIN 327 (409)
Q Consensus 250 ~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~-~L~ 327 (409)
+++.+.+.++-.. .....+. .+++|+.+++++|+++.++...|..+.+|++|++.+| ++..-+..|.++++|+ .++
T Consensus 203 ~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~ 280 (329)
T 3sb4_A 203 DINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLE 280 (329)
T ss_dssp GCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEE
T ss_pred ccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEE
Confidence 5556666554211 1111221 3788899999888888888788888889999999887 6655566788888898 888
Q ss_pred ccCCeecccCchhHhhhccCCccEEEccCCcCcccCchhhhcCCCCCeEEc
Q 038636 328 LARNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWGNLPPEFSSSITRIRGSL 378 (409)
Q Consensus 328 L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~l 378 (409)
+.+ .++...+..|..+.. |+.+++++|.++..-+..|.++++|+.+..
T Consensus 281 l~~-~l~~I~~~aF~~c~~--L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 281 LPA-SVTAIEFGAFMGCDN--LRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp ECT-TCCEECTTTTTTCTT--EEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred Ecc-cceEEchhhhhCCcc--CCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 887 676666778887766 899998888888666667888888888753
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.61 E-value=1.8e-15 Score=128.67 Aligned_cols=133 Identities=21% Similarity=0.081 Sum_probs=105.5
Q ss_pred ccCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchhhhcCCCCC
Q 038636 244 SLRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNL 323 (409)
Q Consensus 244 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L 323 (409)
.+.++.+|+.|++++|.++. ++......++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred hcCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 45667888899999998884 454333344899999999999875 678888899999999999985544556889999
Q ss_pred CEEEccCCeecccCch--hHhhhccCCccEEEccCCcCcccCchh----hhcCCCCCeEEcCCCcc
Q 038636 324 TSINLARNQLSGHIPK--VYGAKLGSSWRSLFLDHNFLWGNLPPE----FSSSITRIRGSLAKNCL 383 (409)
Q Consensus 324 ~~L~L~~N~l~~~~p~--~~~~~~~~~L~~L~L~~N~l~~~~p~~----~~~~~~L~~L~l~~N~l 383 (409)
++|++++|+++ .+|. .+..++. |++|++++|.++ .+|.. +..+++|+.||+++|..
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~--L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKS--LTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTT--CCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CEEECCCCcCC-cchhhHhhhcCCC--CCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 99999999986 5565 6666655 999999999998 56764 88899999999999876
No 133
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.61 E-value=8.2e-16 Score=144.31 Aligned_cols=258 Identities=12% Similarity=0.144 Sum_probs=174.0
Q ss_pred CCcEEEEEccCCCCCCCCccccCCCCCCcEEEccCCcCCCCCcccccC--------CCCCcEEeccCccCCccCchhccC
Q 038636 85 TSRITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITD--------LRKLTTLYLPGNFFTGNIPVGITR 156 (409)
Q Consensus 85 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~--------l~~L~~L~L~~n~~~~~~p~~l~~ 156 (409)
..+++.|+|++|.+.... ..-+.++.++.+.+..+.+. +..|.+ +++|+.+++.. .++..-+.+|.+
T Consensus 48 l~~L~~LdLs~n~i~~~~-~~~~~~~~~~~~~~~~~~I~---~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~ 122 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYS-GKAGTYPNGKFYIYMANFVP---AYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKG 122 (329)
T ss_dssp CTTCCEEEEEEEEECCEE-ESSSSSGGGCCEEECTTEEC---TTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTT
T ss_pred hccCeEEecCcceeEEec-CccccccccccccccccccC---HHHhcccccccccccCCCcEEECCc-cccchhHHHhhc
Confidence 467999999999887211 11122333455555555443 234556 99999999999 777555567999
Q ss_pred CCCCCEEeccCCcCCCCCchhhcCCCCCCeEEeecCcC---CCCCCC--CCCCCCcC-EEeCCCCCCCCCCC-------C
Q 038636 157 LKKLQTLDLSHNSLSGIIPAQLSGLRSLTALRLSHNAF---SGKIPS--LTGAWQLH-TLDLDSNQLYGNLP-------K 223 (409)
Q Consensus 157 l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l---~~~~~~--~~~l~~L~-~L~l~~n~l~~~~~-------~ 223 (409)
+++|+++++.+|.+....+..|..+.++..+....+.. ...+.. +..+..|+ .+.+.... .++ .
T Consensus 123 ~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~ 199 (329)
T 3sb4_A 123 CDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAGL 199 (329)
T ss_dssp CTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTTC
T ss_pred CcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCC---cHHHHHhhccc
Confidence 99999999999998867777788877777666654321 011221 44555555 44443321 111 0
Q ss_pred CCCCCcEEEeecccCCCCCccc-CCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCC-E
Q 038636 224 FPTSLRTLSLSHNLLSGHLSSL-RNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQ-E 301 (409)
Q Consensus 224 ~~~~L~~L~l~~n~l~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~-~ 301 (409)
...++..+.+.++-.......+ ..+++|+.+++++|+++......|.++++|+.+++.+| ++.+....|.++.+|+ .
T Consensus 200 ~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~ 278 (329)
T 3sb4_A 200 QPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGT 278 (329)
T ss_dssp CGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEE
T ss_pred CccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEE
Confidence 1245666666654222111112 23678888999888888666777888888999998887 7777777888888898 8
Q ss_pred EEccCCcCCCcchhhhcCCCCCCEEEccCCeecccCchhHhhhccCCccEEEc
Q 038636 302 LDVQGNLLRGHLPINLVSLRNLTSINLARNQLSGHIPKVYGAKLGSSWRSLFL 354 (409)
Q Consensus 302 L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L 354 (409)
+++.+ .++..-+..|.++++|+.+++++|+++...+..|..+.. |+.++.
T Consensus 279 l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~--L~~ly~ 328 (329)
T 3sb4_A 279 LELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVP--SKLIYK 328 (329)
T ss_dssp EEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCC--CCEEEC
T ss_pred EEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcc--hhhhcc
Confidence 88887 677555678888889999998888888777778877765 888763
No 134
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.55 E-value=6.6e-15 Score=125.14 Aligned_cols=105 Identities=23% Similarity=0.180 Sum_probs=62.7
Q ss_pred CCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchh--hhcCCCCCCEEE
Q 038636 250 NLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPI--NLVSLRNLTSIN 327 (409)
Q Consensus 250 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~--~l~~l~~L~~L~ 327 (409)
+|++|++++|.+++. ..+..+++|++|++++|.+++.++..+..+++|++|++++|.++ .+|. .+..+++|+.|+
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEE
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEE
Confidence 566666666666543 34556666666666666666543333355666666666666664 4444 566666777777
Q ss_pred ccCCeecccCchh----HhhhccCCccEEEccCCcCc
Q 038636 328 LARNQLSGHIPKV----YGAKLGSSWRSLFLDHNFLW 360 (409)
Q Consensus 328 L~~N~l~~~~p~~----~~~~~~~~L~~L~L~~N~l~ 360 (409)
+++|.++ .+|.. +..++. |++||+++|.+.
T Consensus 120 l~~N~i~-~~~~~~~~~~~~l~~--L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 120 ILRNPVT-NKKHYRLYVIYKVPQ--VRVLDFQKVKLK 153 (176)
T ss_dssp CCSSGGG-GSTTHHHHHHHHCTT--CSEETTEECCHH
T ss_pred ecCCCCC-CcHhHHHHHHHHCCc--cceeCCCcCCHH
Confidence 7777666 34442 555544 777777766654
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.52 E-value=1.2e-16 Score=138.67 Aligned_cols=131 Identities=18% Similarity=0.159 Sum_probs=89.8
Q ss_pred ccCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchhhhcCCCCC
Q 038636 244 SLRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNL 323 (409)
Q Consensus 244 ~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L 323 (409)
.+..+++|++|++++|.+++ +| .+..+++|++|++++|.++. .+..+..+++|++|++++|.+++ +| .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~-l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECS-CSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCccc-ccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence 56667777777777777775 45 67777777777777777775 33344455677788888877774 45 56777778
Q ss_pred CEEEccCCeecccCc-hhHhhhccCCccEEEccCCcCcccCchh----------hhcCCCCCeEEcCCCcc
Q 038636 324 TSINLARNQLSGHIP-KVYGAKLGSSWRSLFLDHNFLWGNLPPE----------FSSSITRIRGSLAKNCL 383 (409)
Q Consensus 324 ~~L~L~~N~l~~~~p-~~~~~~~~~~L~~L~L~~N~l~~~~p~~----------~~~~~~L~~L~l~~N~l 383 (409)
++|++++|++++..+ ..+..++. |++|++++|.+++.+|.. +..+++|+.|| +|++
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~--L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i 184 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDK--LEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPV 184 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTT--CSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGG
T ss_pred CEEECCCCcCCchhHHHHHhcCCC--CCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--Cccc
Confidence 888888887774322 35555544 788888888777665542 67777788776 5554
No 136
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.51 E-value=6.6e-13 Score=127.60 Aligned_cols=260 Identities=12% Similarity=0.086 Sum_probs=143.7
Q ss_pred CCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEeccCCcCCCCCchhhcCCCCCCeEEe
Q 038636 110 TELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTALRL 189 (409)
Q Consensus 110 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L 189 (409)
..++.+.+.++ ++..-..+|.++ +|+.+.+..+ +...-..+|.+ .+|+.+.+.. .++..-+..|.++++|+.+++
T Consensus 113 ~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 113 KGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 45555555442 332233445543 5666666554 43233334444 3566666654 444344455666666666666
Q ss_pred ecCcCCCCCCCCCCCCCcCEEeCCCCCCCCCCC---CCCCCCcEEEeecccCCCCCc-ccCCCCCCCEEEeeCCcCCCCC
Q 038636 190 SHNAFSGKIPSLTGAWQLHTLDLDSNQLYGNLP---KFPTSLRTLSLSHNLLSGHLS-SLRNLVNLKSLDLSSNRFTGAI 265 (409)
Q Consensus 190 ~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~l~~n~l~~~~ 265 (409)
.+|.++..........+|+.+.+..+ +...-. .-.++|+.+.+..+ ++.... .|.+ .+|+.+.+. +.++...
T Consensus 188 ~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~ 263 (401)
T 4fdw_A 188 SKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIA 263 (401)
T ss_dssp TTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEEC
T ss_pred CCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEC
Confidence 66665532222222456666666533 221111 11245666666553 332223 4555 567777774 3455455
Q ss_pred chhhcCCCCCcEEEccCCcCC-----ccCCCCCCCCCCCCEEEccCCcCCCcchhhhcCCCCCCEEEccCCeecccCchh
Q 038636 266 SHEVLTLPQVVSIDVSVNRLT-----AIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLTSINLARNQLSGHIPKV 340 (409)
Q Consensus 266 ~~~~~~l~~L~~L~L~~n~l~-----~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~ 340 (409)
..+|.++++|+.+++.+|.+. .+....|..+++|+.+++.+ .++..-...|.++++|+.+.|..| ++...+.+
T Consensus 264 ~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~a 341 (401)
T 4fdw_A 264 SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSA 341 (401)
T ss_dssp TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTS
T ss_pred hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHh
Confidence 566777777777777766654 34555677777777777773 455444556777777777777554 55445556
Q ss_pred HhhhccCCccEEEccCCcCcccCchhhhcCC-CCCeEEcCCCcc
Q 038636 341 YGAKLGSSWRSLFLDHNFLWGNLPPEFSSSI-TRIRGSLAKNCL 383 (409)
Q Consensus 341 ~~~~~~~~L~~L~L~~N~l~~~~p~~~~~~~-~L~~L~l~~N~l 383 (409)
|..+ . |+.+++.+|.+....+..|..++ .++.|.+-.+.+
T Consensus 342 F~~~-~--L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 342 FNNT-G--IKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp SSSS-C--CCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred CCCC-C--CCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 6665 4 77777777776644444555553 466666665544
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.49 E-value=2.2e-13 Score=114.98 Aligned_cols=106 Identities=23% Similarity=0.213 Sum_probs=64.9
Q ss_pred cEEEeecccCCCCCcccCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCc
Q 038636 229 RTLSLSHNLLSGHLSSLRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNL 308 (409)
Q Consensus 229 ~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~ 308 (409)
+.+++++|.++..+..+. ++|++|++++|++++..|..|..+++|++|+|++|+++++++..+..+++|++|+|++|+
T Consensus 12 ~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 444555555544333332 556666666666666666666666666666666666666555555666666666666666
Q ss_pred CCCcchhhhcCCCCCCEEEccCCeeccc
Q 038636 309 LRGHLPINLVSLRNLTSINLARNQLSGH 336 (409)
Q Consensus 309 l~~~~p~~l~~l~~L~~L~L~~N~l~~~ 336 (409)
+++..+..|..+++|++|+|++|.+.+.
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 6655555566666777777777766644
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.47 E-value=8.4e-16 Score=133.36 Aligned_cols=131 Identities=18% Similarity=0.189 Sum_probs=110.5
Q ss_pred CCCCCCCEEEeeCCcCCCCCch------hhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchhhhcC
Q 038636 246 RNLVNLKSLDLSSNRFTGAISH------EVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVS 319 (409)
Q Consensus 246 ~~l~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~ 319 (409)
.....++.++++.+.+.|..|. .+..+++|++|++++|.+++++ .+..+++|++|++++|.++ .+|..+..
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~-~l~~~~~~ 91 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIK-KIENLDAV 91 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEEC-SCSSHHHH
T ss_pred HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcc-cccchhhc
Confidence 3445566666777777666665 8999999999999999999843 7888999999999999999 78888888
Q ss_pred CCCCCEEEccCCeecccCchhHhhhccCCccEEEccCCcCcccCc-hhhhcCCCCCeEEcCCCcc
Q 038636 320 LRNLTSINLARNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWGNLP-PEFSSSITRIRGSLAKNCL 383 (409)
Q Consensus 320 l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~p-~~~~~~~~L~~L~l~~N~l 383 (409)
+++|++|++++|++++ +| .+..+.. |++|++++|.+++..+ ..+..+++|++|++++|++
T Consensus 92 ~~~L~~L~L~~N~l~~-l~-~~~~l~~--L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 92 ADTLEELWISYNQIAS-LS-GIEKLVN--LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp HHHCSEEEEEEEECCC-HH-HHHHHHH--SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred CCcCCEEECcCCcCCc-CC-ccccCCC--CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 8999999999999996 55 6788877 9999999999985322 4788999999999999998
No 139
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.46 E-value=3.7e-12 Score=122.35 Aligned_cols=242 Identities=11% Similarity=0.136 Sum_probs=132.8
Q ss_pred ccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEeccCCcCCCCCchhhcCCCCC
Q 038636 105 SIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSL 184 (409)
Q Consensus 105 ~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L 184 (409)
+|.++ +|+.+++..+ ++..-..+|.++ +|+.+.+.. .+...-+..|.++++|+.+++.+|.++......|. ..+|
T Consensus 131 aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L 205 (401)
T 4fdw_A 131 AFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGI 205 (401)
T ss_dssp TTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCC
T ss_pred hcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-eccc
Confidence 45553 5666666554 443333445553 566666664 44433345566666777777766666633333333 4666
Q ss_pred CeEEeecCcCCCCCCC--CCCCCCcCEEeCCCCCCCCCCC-CC-CCCCcEEEeecccCCCCCc-ccCCCCCCCEEEeeCC
Q 038636 185 TALRLSHNAFSGKIPS--LTGAWQLHTLDLDSNQLYGNLP-KF-PTSLRTLSLSHNLLSGHLS-SLRNLVNLKSLDLSSN 259 (409)
Q Consensus 185 ~~L~L~~n~l~~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~-~~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~l~~n 259 (409)
+.+.+..+ +. .++. |.++++|+.+.+..+ ++..-. .+ ..+|+.+.+.+ .++.... .|.++++|+.+++.+|
T Consensus 206 ~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~ 281 (401)
T 4fdw_A 206 EEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGS 281 (401)
T ss_dssp SEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESS
T ss_pred CEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCc
Confidence 66666643 33 2332 666666666666653 221111 11 15566666633 3333333 6666667777776666
Q ss_pred cCC-----CCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchhhhcCCCCCCEEEccCCeec
Q 038636 260 RFT-----GAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLTSINLARNQLS 334 (409)
Q Consensus 260 ~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~ 334 (409)
.+. ......|.++++|+.+++. +.++.+....|.++.+|+.+.+..+ ++..-+..|.++ +|+.+++++|.+.
T Consensus 282 ~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 282 TFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp CCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred cccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence 543 2334556666677777666 3466555566666667777766443 443444556666 6777777666665
Q ss_pred ccCchhHhhhccCCccEEEccCCcC
Q 038636 335 GHIPKVYGAKLGSSWRSLFLDHNFL 359 (409)
Q Consensus 335 ~~~p~~~~~~~~~~L~~L~L~~N~l 359 (409)
...+..|..++ .+++.|++..+.+
T Consensus 359 ~l~~~~F~~~~-~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 359 QVFEKVWYGFP-DDITVIRVPAESV 382 (401)
T ss_dssp BCCCSSCCCSC-TTCCEEEECGGGH
T ss_pred ccccccccCCC-CCccEEEeCHHHH
Confidence 44444444443 2356666655543
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.46 E-value=4.9e-13 Score=113.31 Aligned_cols=105 Identities=22% Similarity=0.195 Sum_probs=65.9
Q ss_pred cEEEeecccCCCCCcccCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCc
Q 038636 229 RTLSLSHNLLSGHLSSLRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNL 308 (409)
Q Consensus 229 ~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~ 308 (409)
+.+++++|.++..+..+. ++|+.|++++|++++..|..|..+++|++|+|++|++++++...+..+++|++|+|++|+
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 345555555543333332 566666676666666666666667777777777777766554455666777777777777
Q ss_pred CCCcchhhhcCCCCCCEEEccCCeecc
Q 038636 309 LRGHLPINLVSLRNLTSINLARNQLSG 335 (409)
Q Consensus 309 l~~~~p~~l~~l~~L~~L~L~~N~l~~ 335 (409)
+++..+..+..+++|+.|+|++|.+..
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred cceeCHHHhccccCCCEEEeCCCCccc
Confidence 775444456667777777777777664
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.46 E-value=6.5e-13 Score=112.10 Aligned_cols=107 Identities=21% Similarity=0.194 Sum_probs=92.8
Q ss_pred cCEEeCCCCCCCCCCCCCCCCCcEEEeecccCCCCCc-ccCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcC
Q 038636 207 LHTLDLDSNQLYGNLPKFPTSLRTLSLSHNLLSGHLS-SLRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRL 285 (409)
Q Consensus 207 L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 285 (409)
.+.+++++|.++.....++++|++|++++|.+++..+ .|..+++|++|++++|++++..+..|..+++|++|+|++|++
T Consensus 11 ~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l 90 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL 90 (170)
T ss_dssp TTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCcc
Confidence 4677888887776444666888999999999998877 799999999999999999988887889999999999999999
Q ss_pred CccCCCCCCCCCCCCEEEccCCcCCCcc
Q 038636 286 TAIEMTTLSGDTHLQELDVQGNLLRGHL 313 (409)
Q Consensus 286 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 313 (409)
+++++..+..+++|++|+|++|.++...
T Consensus 91 ~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 91 KSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 9977777999999999999999998554
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.46 E-value=3.2e-13 Score=114.47 Aligned_cols=105 Identities=16% Similarity=0.150 Sum_probs=74.1
Q ss_pred CEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCCCcchhhhcCCCCCCEEEccCC
Q 038636 252 KSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLTSINLARN 331 (409)
Q Consensus 252 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N 331 (409)
+.+++++|+++ .+|..+. ++|++|+|++|++++..+..+..+++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 57777777775 5555543 67777888877777766667777777777777777777555555677777777777777
Q ss_pred eecccCchhHhhhccCCccEEEccCCcCcc
Q 038636 332 QLSGHIPKVYGAKLGSSWRSLFLDHNFLWG 361 (409)
Q Consensus 332 ~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~ 361 (409)
++++..+..|..+.. |++|+|++|.+..
T Consensus 92 ~l~~l~~~~~~~l~~--L~~L~L~~N~~~c 119 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKS--LTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCCTTTTTTCTT--CSEEECCSSCBCT
T ss_pred ccceeCHHHhccccC--CCEEEeCCCCccc
Confidence 777555545666654 7777777777763
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.35 E-value=4.7e-14 Score=134.34 Aligned_cols=180 Identities=18% Similarity=0.106 Sum_probs=115.6
Q ss_pred CCCcCEEeCCCCCCCCCCC--------CCCCCCcEEEeecccCCCCCc--ccCCCCCCCEEEeeCCcCCCCCchhh----
Q 038636 204 AWQLHTLDLDSNQLYGNLP--------KFPTSLRTLSLSHNLLSGHLS--SLRNLVNLKSLDLSSNRFTGAISHEV---- 269 (409)
Q Consensus 204 l~~L~~L~l~~n~l~~~~~--------~~~~~L~~L~l~~n~l~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~~---- 269 (409)
.+.|+.|++++|.++.... ...++|++|++++|.++.... ....+++|+.|+|++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 3578899999998875322 122578888998888765322 22345578888888888875444443
Q ss_pred -cCCCCCcEEEccCCcCCccCCC----CCCCCCCCCEEEccCCcCCCc----chhhhcCCCCCCEEEccCCeecccCchh
Q 038636 270 -LTLPQVVSIDVSVNRLTAIEMT----TLSGDTHLQELDVQGNLLRGH----LPINLVSLRNLTSINLARNQLSGHIPKV 340 (409)
Q Consensus 270 -~~l~~L~~L~L~~n~l~~~~~~----~~~~~~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~~p~~ 340 (409)
...++|++|+|++|.++..... .+...++|++|+|++|.+++. ++..+...++|+.|+|++|.+++.....
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 2467888888888888653322 235567888888888888743 3555667788888888888887654433
Q ss_pred Hhhh--ccCCccEEEccCCcCcccCchhhhcCCC-----CCeEE--cCCCcc
Q 038636 341 YGAK--LGSSWRSLFLDHNFLWGNLPPEFSSSIT-----RIRGS--LAKNCL 383 (409)
Q Consensus 341 ~~~~--~~~~L~~L~L~~N~l~~~~p~~~~~~~~-----L~~L~--l~~N~l 383 (409)
+... ..++|++|+|++|.|++.....+..+.. ++.+. +.+|.+
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~ 282 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAV 282 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----C
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCcc
Confidence 3321 1134888888888887665555554432 44444 445544
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.35 E-value=3e-14 Score=135.70 Aligned_cols=189 Identities=20% Similarity=0.164 Sum_probs=112.7
Q ss_pred CCCCCEEeccCCcCCCCCchhhcC-----CCCCCeEEeecCcCCCCCCC--CCCCCCcCEEeCCCCCCCCCCCCCCCCCc
Q 038636 157 LKKLQTLDLSHNSLSGIIPAQLSG-----LRSLTALRLSHNAFSGKIPS--LTGAWQLHTLDLDSNQLYGNLPKFPTSLR 229 (409)
Q Consensus 157 l~~L~~L~l~~n~l~~~~p~~l~~-----l~~L~~L~L~~n~l~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~L~ 229 (409)
++.|++|++++|.++......+.. .++|++|+|++|.++..... ...+++|++|++++|.++.....
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~------ 144 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACK------ 144 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHH------
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHH------
Confidence 357888888888876443333322 25677777777665432111 12233455555555544321110
Q ss_pred EEEeecccCCCCCc-cc-CCCCCCCEEEeeCCcCCC----CCchhhcCCCCCcEEEccCCcCCccC----CCCCCCCCCC
Q 038636 230 TLSLSHNLLSGHLS-SL-RNLVNLKSLDLSSNRFTG----AISHEVLTLPQVVSIDVSVNRLTAIE----MTTLSGDTHL 299 (409)
Q Consensus 230 ~L~l~~n~l~~~~~-~l-~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~~~~L 299 (409)
.+. .+ ...++|+.|++++|.++. .++..+...++|++|+|++|.+++.. ...+...++|
T Consensus 145 -----------~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L 213 (372)
T 3un9_A 145 -----------DLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQL 213 (372)
T ss_dssp -----------HHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCC
T ss_pred -----------HHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCc
Confidence 000 11 245678888888888764 23444567888888888888887533 2234556789
Q ss_pred CEEEccCCcCCCc----chhhhcCCCCCCEEEccCCeecccCchhHhhhccCC---ccEEE--ccCCcCccc
Q 038636 300 QELDVQGNLLRGH----LPINLVSLRNLTSINLARNQLSGHIPKVYGAKLGSS---WRSLF--LDHNFLWGN 362 (409)
Q Consensus 300 ~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~---L~~L~--L~~N~l~~~ 362 (409)
++|+|++|.+++. ++..+...++|++|+|++|.|++.....+....... ++.+. +..|.++..
T Consensus 214 ~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~~ 285 (372)
T 3un9_A 214 QELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEY 285 (372)
T ss_dssp CEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHHH
T ss_pred CeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCHH
Confidence 9999999998853 344556678999999999999887777776654333 66666 666666543
No 145
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.30 E-value=1.5e-10 Score=111.03 Aligned_cols=282 Identities=13% Similarity=0.143 Sum_probs=166.9
Q ss_pred CCcEEEEEccCCCCCCCCccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCC-----------------
Q 038636 85 TSRITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFT----------------- 147 (409)
Q Consensus 85 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~----------------- 147 (409)
..+++++.+.. .++..-..+|.++++|+.+++.++ ++..-..+|.+++.|+.+.+..+--.
T Consensus 70 c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~~ 147 (394)
T 4fs7_A 70 CRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITIP 147 (394)
T ss_dssp CTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEECC
T ss_pred CCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccccccC
Confidence 35678888864 355444556888888888888654 33233455667777776665433100
Q ss_pred ----ccCchhccCCCCCCEEeccCCcCCCCCchhhcCCCCCCeEEeecCcCCCCCCC--CCCCCCcCEEeCCCCCCC-CC
Q 038636 148 ----GNIPVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTALRLSHNAFSGKIPS--LTGAWQLHTLDLDSNQLY-GN 220 (409)
Q Consensus 148 ----~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~--~~~l~~L~~L~l~~n~l~-~~ 220 (409)
..-..+|.++++|+.+.+..+. .......|.++.+|+.+.+..+ +. .++. +.++..|+.+.+..+... +.
T Consensus 148 ~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~-~I~~~~F~~~~~L~~i~~~~~~~~i~~ 224 (394)
T 4fs7_A 148 EGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LK-IIRDYCFAECILLENMEFPNSLYYLGD 224 (394)
T ss_dssp TTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CC-EECTTTTTTCTTCCBCCCCTTCCEECT
T ss_pred ccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ce-EeCchhhccccccceeecCCCceEeeh
Confidence 0011234555666666665432 2223344555666666666544 22 2222 555555655555443221 11
Q ss_pred CCCCCCCCcEEEeecccCCCCCc-ccCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCC
Q 038636 221 LPKFPTSLRTLSLSHNLLSGHLS-SLRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHL 299 (409)
Q Consensus 221 ~~~~~~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L 299 (409)
......+|+.+.+.... +.... .+..+..++.+.+..+... .....|..+..++.+....+.+ ....+..+.+|
T Consensus 225 ~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L 299 (394)
T 4fs7_A 225 FALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSL 299 (394)
T ss_dssp TTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTC
T ss_pred hhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee---ccccccccccc
Confidence 11112567777665432 22222 6677778888888766433 4445667777888777766543 33456778888
Q ss_pred CEEEccCCcCCCcchhhhcCCCCCCEEEccCCeecccCchhHhhhccCCccEEEccCCcCcccCchhhhcCCCCCeEEcC
Q 038636 300 QELDVQGNLLRGHLPINLVSLRNLTSINLARNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWGNLPPEFSSSITRIRGSLA 379 (409)
Q Consensus 300 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~l~ 379 (409)
+.+.+.++ ++..-...|.++.+|+.++|..+ ++.....+|..+.. |+.+++..+ ++..-...|.++.+|+.+++.
T Consensus 300 ~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~--L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp 374 (394)
T 4fs7_A 300 TEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTS--LSNINFPLS-LRKIGANAFQGCINLKKVELP 374 (394)
T ss_dssp CEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTT--CCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred cccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCC--CCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence 88888654 55344556788888888888654 55455667777755 888888766 554445678888888888886
Q ss_pred CC
Q 038636 380 KN 381 (409)
Q Consensus 380 ~N 381 (409)
.+
T Consensus 375 ~~ 376 (394)
T 4fs7_A 375 KR 376 (394)
T ss_dssp GG
T ss_pred CC
Confidence 54
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.28 E-value=1.2e-11 Score=116.51 Aligned_cols=105 Identities=20% Similarity=0.212 Sum_probs=83.6
Q ss_pred CEEEeeCC-cCCCCCchhhcCCCCCcEEEccC-CcCCccCCCCCCCCCCCCEEEccCCcCCCcchhhhcCCCCCCEEEcc
Q 038636 252 KSLDLSSN-RFTGAISHEVLTLPQVVSIDVSV-NRLTAIEMTTLSGDTHLQELDVQGNLLRGHLPINLVSLRNLTSINLA 329 (409)
Q Consensus 252 ~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~ 329 (409)
..++++++ +++ .+|. +..+++|+.|+|++ |.++++++..|..+++|+.|+|++|+|++..|..|.++++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35688887 777 4676 88888899999985 88888777778888889999999998888888888888889999999
Q ss_pred CCeecccCchhHhhhccCCccEEEccCCcCcc
Q 038636 330 RNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWG 361 (409)
Q Consensus 330 ~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~ 361 (409)
+|+|++..+..+..+ . |++|+|.+|.+..
T Consensus 89 ~N~l~~~~~~~~~~~-~--L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNALESLSWKTVQGL-S--LQELVLSGNPLHC 117 (347)
T ss_dssp SSCCSCCCSTTTCSC-C--CCEEECCSSCCCC
T ss_pred CCccceeCHHHcccC-C--ceEEEeeCCCccC
Confidence 998886555544433 2 8888888888874
No 147
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.27 E-value=1.5e-11 Score=115.86 Aligned_cols=101 Identities=22% Similarity=0.238 Sum_probs=86.3
Q ss_pred cCC-CCCCCCccccCCCCCCcEEEccC-CcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEeccCCcCC
Q 038636 94 DSS-GYDGFLTPSIGNLTELTTLDLSR-NNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDLSHNSLS 171 (409)
Q Consensus 94 ~~~-~l~~~~~~~l~~l~~L~~L~L~~-n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l~~n~l~ 171 (409)
+++ ++++ +|. +..+++|++|+|++ |.+++..+..|+++++|++|+|++|.+++..|..|.++++|++|+|++|.++
T Consensus 16 ~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 93 (347)
T 2ifg_A 16 TRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALE 93 (347)
T ss_dssp CSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCS
T ss_pred CCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccc
Confidence 344 5665 676 99999999999996 9999877788999999999999999999888889999999999999999999
Q ss_pred CCCchhhcCCCCCCeEEeecCcCCCC
Q 038636 172 GIIPAQLSGLRSLTALRLSHNAFSGK 197 (409)
Q Consensus 172 ~~~p~~l~~l~~L~~L~L~~n~l~~~ 197 (409)
+..+..+..++ |+.|++.+|.+...
T Consensus 94 ~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 94 SLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp CCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred eeCHHHcccCC-ceEEEeeCCCccCC
Confidence 76655666555 99999999988753
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.12 E-value=1.6e-09 Score=103.86 Aligned_cols=278 Identities=13% Similarity=0.040 Sum_probs=186.3
Q ss_pred CCcEEEEEccCCCCCCCCccccCCCCCCcEEEccCCc---------------------CCCCCcccccCCCCCcEEeccC
Q 038636 85 TSRITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNN---------------------FRGPIPDTITDLRKLTTLYLPG 143 (409)
Q Consensus 85 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~---------------------l~~~~p~~l~~l~~L~~L~L~~ 143 (409)
..+++.+++..+ ++..-...|.+++.|+.+.+..+- .......+|.++++|+.+.+..
T Consensus 93 c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~ 171 (394)
T 4fs7_A 93 CSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPD 171 (394)
T ss_dssp CTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCT
T ss_pred CCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccccccCccccccchhhhcccCCCcEEecCC
Confidence 356777777643 333333456666666665554320 1111234578889999999986
Q ss_pred ccCCccCchhccCCCCCCEEeccCCcCCCCCchhhcCCCCCCeEEeecCcCCCCCCCCCCCCCcCEEeCCCCCC--CCCC
Q 038636 144 NFFTGNIPVGITRLKKLQTLDLSHNSLSGIIPAQLSGLRSLTALRLSHNAFSGKIPSLTGAWQLHTLDLDSNQL--YGNL 221 (409)
Q Consensus 144 n~~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l--~~~~ 221 (409)
+... .-...|.++.+|+.+.+..+ ++......+.++..|+.+.+..+... .-.......+|+.+.+....- ....
T Consensus 172 ~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i~~~~~~~~~l~~i~ip~~~~~i~~~~ 248 (394)
T 4fs7_A 172 SMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-LGDFALSKTGVKNIIIPDSFTELGKSV 248 (394)
T ss_dssp TCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-ECTTTTTTCCCCEEEECTTCCEECSST
T ss_pred ccce-eccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE-eehhhcccCCCceEEECCCceeccccc
Confidence 5432 44467888999999999766 44344567888899999888765432 112244456788887754321 1111
Q ss_pred CCCCCCCcEEEeecccCCCCCcccCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCE
Q 038636 222 PKFPTSLRTLSLSHNLLSGHLSSLRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQE 301 (409)
Q Consensus 222 ~~~~~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~ 301 (409)
......++.+.+..+...-....+..+..++.+....+.+. ...+..+.+|+.+.+..+ ++.+....|..+.+|+.
T Consensus 249 f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~ 324 (394)
T 4fs7_A 249 FYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVS 324 (394)
T ss_dssp TTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCE
T ss_pred ccccccceeEEcCCCcceeeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCE
Confidence 12336788888877644322237888889998888766533 345778899999999754 77767778899999999
Q ss_pred EEccCCcCCCcchhhhcCCCCCCEEEccCCeecccCchhHhhhccCCccEEEccCCcCcccCchhhhcCCCCCeE
Q 038636 302 LDVQGNLLRGHLPINLVSLRNLTSINLARNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWGNLPPEFSSSITRIRG 376 (409)
Q Consensus 302 L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L 376 (409)
+++.++ ++..-...|.++.+|+.+++..+ ++.....+|..+.+ |+.+++..+ +. .+...|.++++|+.+
T Consensus 325 i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~--L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 325 IDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCIN--LKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp ECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTT--CCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred EEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCC--CCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 999754 66444567889999999999877 66566677888766 999999765 22 345567777777664
No 149
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.06 E-value=1.1e-08 Score=98.04 Aligned_cols=102 Identities=14% Similarity=0.155 Sum_probs=54.0
Q ss_pred EEEEEccCCCCCCCCccccCCCCCCcEEEccCCc---CCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEe
Q 038636 88 ITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNN---FRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLD 164 (409)
Q Consensus 88 v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~---l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~ 164 (409)
++++.+... ++..-..+|.++++|+.+.+..+. ++..-..+|..+.+|+.+.+..+ ++..-...|..+.+|+.+.
T Consensus 66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~ 143 (394)
T 4gt6_A 66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVT 143 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEE
T ss_pred CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccc
Confidence 555555432 343334556777777777776543 33223345666666666665543 2222234456666677766
Q ss_pred ccCCcCCCCCchhhcCCCCCCeEEeecC
Q 038636 165 LSHNSLSGIIPAQLSGLRSLTALRLSHN 192 (409)
Q Consensus 165 l~~n~l~~~~p~~l~~l~~L~~L~L~~n 192 (409)
+..+ +.......+..+.+|+.+.+..+
T Consensus 144 lp~~-~~~I~~~~F~~c~~L~~i~~~~~ 170 (394)
T 4gt6_A 144 IPEG-VTSVADGMFSYCYSLHTVTLPDS 170 (394)
T ss_dssp CCTT-CCEECTTTTTTCTTCCEEECCTT
T ss_pred ccce-eeeecccceecccccccccccce
Confidence 6533 22223344556666666666543
No 150
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.01 E-value=3.8e-08 Score=94.29 Aligned_cols=269 Identities=10% Similarity=0.109 Sum_probs=165.1
Q ss_pred cccCCCC-CCcEEEccCCcCCCCCcccccCCCCCcEEeccCcc---CCccCchhccCCCCCCEEeccCCcCCCCCchhhc
Q 038636 104 PSIGNLT-ELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNF---FTGNIPVGITRLKKLQTLDLSHNSLSGIIPAQLS 179 (409)
Q Consensus 104 ~~l~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~---~~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~ 179 (409)
.+|.++. .|+.+.+..+ ++..-..+|.++++|+.+.+..|. ++..-..+|..+.+|+.+.+..+ ++......+.
T Consensus 57 ~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~ 134 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFH 134 (394)
T ss_dssp TTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTT
T ss_pred hhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhh
Confidence 4577774 5999999764 554556789999999999998763 44333457888899998887654 4434455788
Q ss_pred CCCCCCeEEeecCcCCCCCCC--CCCCCCcCEEeCCCCCCCCCCC-CC-CCCCcEEEeecccCCCCCcccCCCCCCCEEE
Q 038636 180 GLRSLTALRLSHNAFSGKIPS--LTGAWQLHTLDLDSNQLYGNLP-KF-PTSLRTLSLSHNLLSGHLSSLRNLVNLKSLD 255 (409)
Q Consensus 180 ~l~~L~~L~L~~n~l~~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~-~~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~ 255 (409)
.+.+|+.+.+..+.. .+.. +..+.+|+.+.+..+- ...-. .+ ...|+.+.+..+...-....+..+.+++...
T Consensus 135 ~c~~L~~i~lp~~~~--~I~~~~F~~c~~L~~i~~~~~~-~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~ 211 (394)
T 4gt6_A 135 HCEELDTVTIPEGVT--SVADGMFSYCYSLHTVTLPDSV-TAIEERAFTGTALTQIHIPAKVTRIGTNAFSECFALSTIT 211 (394)
T ss_dssp TCTTCCEEECCTTCC--EECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCCCSEEEECTTCCEECTTTTTTCTTCCEEE
T ss_pred hhcccccccccceee--eecccceeccccccccccccee-eEeccccccccceeEEEECCcccccccchhhhccccceec
Confidence 899999999975432 2333 7778888888886542 11101 11 1456666654432211111333444444333
Q ss_pred eeCCc------------------------------------CCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCC
Q 038636 256 LSSNR------------------------------------FTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHL 299 (409)
Q Consensus 256 l~~n~------------------------------------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L 299 (409)
...+. ++.....+|..+..|+.+.+..+. ..+....+..+.+|
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L 290 (394)
T 4gt6_A 212 SDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSV-VSIGTGAFMNCPAL 290 (394)
T ss_dssp ECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTC-CEECTTTTTTCTTC
T ss_pred ccccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEeccccc-ceecCccccccccc
Confidence 22211 111122345666777777776443 33455567777888
Q ss_pred CEEEccCCcCCCcchhhhcCCCCCCEEEccCCeecccCchhHhhhccCCccEEEccCCcCcccCchhhhcCCCCCeEEcC
Q 038636 300 QELDVQGNLLRGHLPINLVSLRNLTSINLARNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWGNLPPEFSSSITRIRGSLA 379 (409)
Q Consensus 300 ~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~l~ 379 (409)
+.+.+. +.++..-...|.++.+|+.++|..+ ++.....+|..+.. |+.+.+..+ ++..-...|.++++|+.+++.
T Consensus 291 ~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~--L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~ 365 (394)
T 4gt6_A 291 QDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ--LERIAIPSS-VTKIPESAFSNCTALNNIEYS 365 (394)
T ss_dssp CEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT--CCEEEECTT-CCBCCGGGGTTCTTCCEEEES
T ss_pred ccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC--CCEEEECcc-cCEEhHhHhhCCCCCCEEEEC
Confidence 888875 3444344456777788888888654 44444556766655 888888644 553334567778888888887
Q ss_pred CCcc
Q 038636 380 KNCL 383 (409)
Q Consensus 380 ~N~l 383 (409)
++..
T Consensus 366 ~~~~ 369 (394)
T 4gt6_A 366 GSRS 369 (394)
T ss_dssp SCHH
T ss_pred Ccee
Confidence 7653
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.01 E-value=1.2e-10 Score=109.94 Aligned_cols=205 Identities=15% Similarity=0.162 Sum_probs=115.0
Q ss_pred CCcEEEEEccCCCCCC-CC-------ccccCCCCCCcEEEccCCcCC---------CCCcccccCCCCCcEEeccCccCC
Q 038636 85 TSRITAIYLDSSGYDG-FL-------TPSIGNLTELTTLDLSRNNFR---------GPIPDTITDLRKLTTLYLPGNFFT 147 (409)
Q Consensus 85 ~~~v~~L~L~~~~l~~-~~-------~~~l~~l~~L~~L~L~~n~l~---------~~~p~~l~~l~~L~~L~L~~n~~~ 147 (409)
..+|+.|.+....+.| .. ..++.++++|+.|.+...... +.+...+..+|+|+.|++++|.-.
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence 4678899888776553 21 233556789999988665321 224455567778888888776311
Q ss_pred ccCchhccCCCCCCEEeccCCcCCCCCchhhc--CCCCCCeEEeecC--cCCCCCCCCCCCCCcCEEeCCCCCCCCCCC-
Q 038636 148 GNIPVGITRLKKLQTLDLSHNSLSGIIPAQLS--GLRSLTALRLSHN--AFSGKIPSLTGAWQLHTLDLDSNQLYGNLP- 222 (409)
Q Consensus 148 ~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~--~l~~L~~L~L~~n--~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~- 222 (409)
.++. +. +++|++|++..+.+.......+. .+++|++|+|+.+ ...+. ..+..+.. .+.
T Consensus 186 -~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~-~~~~~l~~-------------~l~~ 248 (362)
T 2ra8_A 186 -SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFD-GDMNVFRP-------------LFSK 248 (362)
T ss_dssp -BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCC-SCGGGTGG-------------GSCT
T ss_pred -eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccc-hhHHHHHH-------------HHhc
Confidence 2333 33 67788888877766533323333 5777777777532 11111 00000000 000
Q ss_pred CCCCCCcEEEeecccCCCCCc----ccCCCCCCCEEEeeCCcCCCC----CchhhcCCCCCcEEEccCCcCCccCCCCCC
Q 038636 223 KFPTSLRTLSLSHNLLSGHLS----SLRNLVNLKSLDLSSNRFTGA----ISHEVLTLPQVVSIDVSVNRLTAIEMTTLS 294 (409)
Q Consensus 223 ~~~~~L~~L~l~~n~l~~~~~----~l~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 294 (409)
..+++|+.|++.+|.+..... ....+++|++|+|+.|.+.+. ++..+..+++|+.|++++|.++......+.
T Consensus 249 ~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~ 328 (362)
T 2ra8_A 249 DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQ 328 (362)
T ss_dssp TTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHH
T ss_pred CCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHH
Confidence 112566666666666553221 113467788888888877653 233334567888888888877653333332
Q ss_pred C-CCCCCEEEccCCc
Q 038636 295 G-DTHLQELDVQGNL 308 (409)
Q Consensus 295 ~-~~~L~~L~Ls~n~ 308 (409)
. + ...+++++++
T Consensus 329 ~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 329 KSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHC--CSEEECCSBC
T ss_pred HHc--CCEEEecCCc
Confidence 1 1 3557777766
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.96 E-value=1.9e-09 Score=101.83 Aligned_cols=151 Identities=14% Similarity=0.171 Sum_probs=94.9
Q ss_pred CCCcEEEeecccCCCCCcccCCCCCCCEEEeeCCcCCCCCchhhc--CCCCCcEEEccC--CcCCcc-CC----CCC--C
Q 038636 226 TSLRTLSLSHNLLSGHLSSLRNLVNLKSLDLSSNRFTGAISHEVL--TLPQVVSIDVSV--NRLTAI-EM----TTL--S 294 (409)
Q Consensus 226 ~~L~~L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~--n~l~~~-~~----~~~--~ 294 (409)
++|+.|.+++|.-... +.+. .++|+.|++..+.+.......+. .+|+|++|+|+. |...+. .. +.+ .
T Consensus 172 P~L~~L~L~g~~~l~l-~~~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~ 249 (362)
T 2ra8_A 172 PLLNNLKIKGTNNLSI-GKKP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKD 249 (362)
T ss_dssp TTCCEEEEECCBTCBC-CSCB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTT
T ss_pred CCCcEEEEeCCCCcee-cccc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcC
Confidence 5677777766521111 2232 67888888888877654444444 678888888853 221110 01 112 3
Q ss_pred CCCCCCEEEccCCcCCCcchhhhc---CCCCCCEEEccCCeecccCchhH----hhhccCCccEEEccCCcCcccCchhh
Q 038636 295 GDTHLQELDVQGNLLRGHLPINLV---SLRNLTSINLARNQLSGHIPKVY----GAKLGSSWRSLFLDHNFLWGNLPPEF 367 (409)
Q Consensus 295 ~~~~L~~L~Ls~n~l~~~~p~~l~---~l~~L~~L~L~~N~l~~~~p~~~----~~~~~~~L~~L~L~~N~l~~~~p~~~ 367 (409)
.+++|+.|++.+|.+.+..+..+. .+++|++|+|+.|.+.+..+..+ ..++. |+.|+|++|.++...-..+
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~--L~~L~L~~n~i~d~~~~~l 327 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKH--LKFINMKYNYLSDEMKKEL 327 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTT--CSEEECCSBBCCHHHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCc--ceEEECCCCcCCHHHHHHH
Confidence 478899999988888765544443 46789999999998887544333 33444 8999999888876544444
Q ss_pred hc-CCCCCeEEcCCCc
Q 038636 368 SS-SITRIRGSLAKNC 382 (409)
Q Consensus 368 ~~-~~~L~~L~l~~N~ 382 (409)
.. + ...+++++++
T Consensus 328 ~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 328 QKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHC--CSEEECCSBC
T ss_pred HHHc--CCEEEecCCc
Confidence 43 2 3667888775
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.77 E-value=6e-07 Score=85.31 Aligned_cols=283 Identities=14% Similarity=0.084 Sum_probs=154.4
Q ss_pred CcEEEEEccCCCCCCCCccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEec
Q 038636 86 SRITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLDL 165 (409)
Q Consensus 86 ~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~l 165 (409)
.+++.+.+.. +++..-..+|.++.+|+.++|..+ ++..-..+|.++ +|+.+.+..+ +...-...|.. .+|+.+.+
T Consensus 46 ~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~i~l 120 (379)
T 4h09_A 46 DRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDDFEF 120 (379)
T ss_dssp GGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSEEEC
T ss_pred cCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcccccC
Confidence 3456666653 344444456888889999888754 443344566666 5777776543 33122233443 47888888
Q ss_pred cCCcCCCCCchhhcCCCCCCeEEeecCcCCCCCCCCCCCCCcCEEeCCCCCCCCCCC---------------CCCCCCcE
Q 038636 166 SHNSLSGIIPAQLSGLRSLTALRLSHNAFSGKIPSLTGAWQLHTLDLDSNQLYGNLP---------------KFPTSLRT 230 (409)
Q Consensus 166 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~---------------~~~~~L~~ 230 (409)
..+ ++......+.+ .+++.+.+..+--.-....+.....++.+.+..+....... .....+..
T Consensus 121 p~~-~~~i~~~~F~~-~~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (379)
T 4h09_A 121 PGA-TTEIGNYIFYN-SSVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTE 198 (379)
T ss_dssp CTT-CCEECTTTTTT-CCCCEEEECTTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSE
T ss_pred CCc-ccccccccccc-ceeeeeeccceeeccccchhcccccccccccccccceeecccceecccccceeccccccccccc
Confidence 654 22122233333 35666655443211111125566666666665433211000 00123333
Q ss_pred EEeecccCCCCCcccCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCcCC
Q 038636 231 LSLSHNLLSGHLSSLRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNLLR 310 (409)
Q Consensus 231 L~l~~n~l~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~l~ 310 (409)
+.+....-.-....+....+|+.+.+..+ +.......+..+..|+.+.+..+ ++.+....+..+.+|+.+.+..+ +.
T Consensus 199 ~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~ 275 (379)
T 4h09_A 199 FTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK 275 (379)
T ss_dssp EECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS
T ss_pred cccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce
Confidence 33332211111114555666777766544 33333455666777777777654 55555566777777777777543 44
Q ss_pred CcchhhhcCCCCCCEEEccCCeecccCchhHhhhccCCccEEEccCCcCcccCchhhhcCCCCCeEEcCCC
Q 038636 311 GHLPINLVSLRNLTSINLARNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWGNLPPEFSSSITRIRGSLAKN 381 (409)
Q Consensus 311 ~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~l~~N 381 (409)
..-...|.++++|+.+.+.++.++......|..+.. |+.+.+..+ ++..-...|.++.+|+.+.+..+
T Consensus 276 ~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~--L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 276 TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVK--LSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTT--CCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred eccccccccccccccccccccccceehhhhhcCCCC--CCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 233445677777887777777776555566666655 777777654 44333456777777777776543
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.67 E-value=1.2e-08 Score=86.92 Aligned_cols=115 Identities=16% Similarity=0.128 Sum_probs=55.9
Q ss_pred hcCCCCCcEEEccCC-cCCccCCC----CCCCCCCCCEEEccCCcCCCc----chhhhcCCCCCCEEEccCCeecccCch
Q 038636 269 VLTLPQVVSIDVSVN-RLTAIEMT----TLSGDTHLQELDVQGNLLRGH----LPINLVSLRNLTSINLARNQLSGHIPK 339 (409)
Q Consensus 269 ~~~l~~L~~L~L~~n-~l~~~~~~----~~~~~~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~~p~ 339 (409)
+...+.|++|+|++| .+...... .+...++|++|+|++|.+... +...+...++|++|+|++|.|......
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 334455555555555 44432111 223345555566665555532 233344445666666666666544322
Q ss_pred hHhhhc--cCCccEEEc--cCCcCccc----CchhhhcCCCCCeEEcCCCcc
Q 038636 340 VYGAKL--GSSWRSLFL--DHNFLWGN----LPPEFSSSITRIRGSLAKNCL 383 (409)
Q Consensus 340 ~~~~~~--~~~L~~L~L--~~N~l~~~----~p~~~~~~~~L~~L~l~~N~l 383 (409)
.++..- .++|++|+| ++|.++.. +...+...+.|+.|++++|.+
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 222210 123666666 55666543 233344445666666666655
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.63 E-value=9.7e-09 Score=87.54 Aligned_cols=118 Identities=14% Similarity=0.114 Sum_probs=83.1
Q ss_pred ccCCCCCCCEEEeeCC-cCCCC----CchhhcCCCCCcEEEccCCcCCccCCC----CCCCCCCCCEEEccCCcCCCc--
Q 038636 244 SLRNLVNLKSLDLSSN-RFTGA----ISHEVLTLPQVVSIDVSVNRLTAIEMT----TLSGDTHLQELDVQGNLLRGH-- 312 (409)
Q Consensus 244 ~l~~l~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~~~~L~~L~Ls~n~l~~~-- 312 (409)
.+...+.|++|+|++| .+... +...+...++|++|+|++|.+...... .+...++|++|+|++|.+.+.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 4566778888888888 77632 344556678888888888888653322 234457888999999988854
Q ss_pred --chhhhcCCCCCCEEEc--cCCeecccCchhHhhh--ccCCccEEEccCCcCcc
Q 038636 313 --LPINLVSLRNLTSINL--ARNQLSGHIPKVYGAK--LGSSWRSLFLDHNFLWG 361 (409)
Q Consensus 313 --~p~~l~~l~~L~~L~L--~~N~l~~~~p~~~~~~--~~~~L~~L~L~~N~l~~ 361 (409)
+...+...++|++|+| ++|.+.......+... ..++|++|+|++|.+..
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 4556677788999999 8898887654444433 11349999999998863
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.46 E-value=2.9e-07 Score=82.62 Aligned_cols=79 Identities=22% Similarity=0.212 Sum_probs=41.2
Q ss_pred CCCCEEEccCCcCCC--cchhhhcCCCCCCEEEccCCeecccCchhHhhhccCCccEEEccCCcCcccCch-------hh
Q 038636 297 THLQELDVQGNLLRG--HLPINLVSLRNLTSINLARNQLSGHIPKVYGAKLGSSWRSLFLDHNFLWGNLPP-------EF 367 (409)
Q Consensus 297 ~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N~l~~~~p~-------~~ 367 (409)
++|+.|+|++|++++ .+|..+..+++|+.|+|++|+|++. ..+..+...+|++|+|++|.+++.+|. .+
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il 247 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIR 247 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHHH
Confidence 344444444444443 3344455566666666666666543 222333211266666666666665542 35
Q ss_pred hcCCCCCeEE
Q 038636 368 SSSITRIRGS 377 (409)
Q Consensus 368 ~~~~~L~~L~ 377 (409)
..+++|+.||
T Consensus 248 ~~~P~L~~LD 257 (267)
T 3rw6_A 248 ERFPKLLRLD 257 (267)
T ss_dssp HHCTTCCEES
T ss_pred HHCcccCeEC
Confidence 5666666665
No 157
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.46 E-value=2.6e-05 Score=73.90 Aligned_cols=260 Identities=10% Similarity=0.079 Sum_probs=159.5
Q ss_pred CCcEEEEEccCCCCCCCCccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccCccCCccCchhccCCCCCCEEe
Q 038636 85 TSRITAIYLDSSGYDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPGNFFTGNIPVGITRLKKLQTLD 164 (409)
Q Consensus 85 ~~~v~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~~~~~~p~~l~~l~~L~~L~ 164 (409)
..+++.+.+..+ ++..-..+|.++ .|+.+.+..+ ++.....+|.. .+|+.+.+..+-.. .-...|.+ .+|+.+.
T Consensus 68 C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~~i~lp~~~~~-i~~~~F~~-~~l~~~~ 141 (379)
T 4h09_A 68 CYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLDDFEFPGATTE-IGNYIFYN-SSVKRIV 141 (379)
T ss_dssp CTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCSEEECCTTCCE-ECTTTTTT-CCCCEEE
T ss_pred CCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcccccCCCcccc-cccccccc-ceeeeee
Confidence 467888888743 554444567776 6888877654 33222334544 47999999765322 22234444 3566666
Q ss_pred ccCCcCCCCCchhhcCCCCCCeEEeecCcCCCCCC-------------CCCCCCCcCEEeCCCCCCCCC--CCCCCCCCc
Q 038636 165 LSHNSLSGIIPAQLSGLRSLTALRLSHNAFSGKIP-------------SLTGAWQLHTLDLDSNQLYGN--LPKFPTSLR 229 (409)
Q Consensus 165 l~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~-------------~~~~l~~L~~L~l~~n~l~~~--~~~~~~~L~ 229 (409)
+..+ ++......+..+.+++.+.+..+....... .+.....+..+.+......-. ......+|+
T Consensus 142 ~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~ 220 (379)
T 4h09_A 142 IPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVKTVTAYGFSYGKNLK 220 (379)
T ss_dssp ECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCCEECTTTTTTCSSCS
T ss_pred ccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccccccccccceeEEeecccccccccc
Confidence 5433 333344566777888888776543221110 123333444444433221100 012235677
Q ss_pred EEEeecccCCCCCc-ccCCCCCCCEEEeeCCcCCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccCCc
Q 038636 230 TLSLSHNLLSGHLS-SLRNLVNLKSLDLSSNRFTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGNL 308 (409)
Q Consensus 230 ~L~l~~n~l~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n~ 308 (409)
.+.+..+ +..... .+..+..|+.+.+..+ ++......|.++.+|+.+.+.. .++.+....|..+.+|+.+.+.++.
T Consensus 221 ~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~ 297 (379)
T 4h09_A 221 KITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSA 297 (379)
T ss_dssp EEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTT
T ss_pred eeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccccccccccccc
Confidence 7777554 222222 6778888999888765 5545556777888899988864 4666566778888999999998888
Q ss_pred CCCcchhhhcCCCCCCEEEccCCeecccCchhHhhhccCCccEEEccCC
Q 038636 309 LRGHLPINLVSLRNLTSINLARNQLSGHIPKVYGAKLGSSWRSLFLDHN 357 (409)
Q Consensus 309 l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~L~~L~L~~N 357 (409)
++..-...|.++.+|+.+.|..+ ++.....+|.++.. |+.+.+..+
T Consensus 298 i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~--L~~i~ip~~ 343 (379)
T 4h09_A 298 IETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKA--LSTISYPKS 343 (379)
T ss_dssp CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT--CCCCCCCTT
T ss_pred cceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCC--CCEEEECCc
Confidence 87555667888899999999754 55455567777755 888877544
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.39 E-value=2.5e-07 Score=82.98 Aligned_cols=104 Identities=20% Similarity=0.234 Sum_probs=74.0
Q ss_pred CCCCCCcE--EEccCCcCC---CCCcccccCCCCCcEEeccCccCCc--cCchhccCCCCCCEEeccCCcCCCCCchhhc
Q 038636 107 GNLTELTT--LDLSRNNFR---GPIPDTITDLRKLTTLYLPGNFFTG--NIPVGITRLKKLQTLDLSHNSLSGIIPAQLS 179 (409)
Q Consensus 107 ~~l~~L~~--L~L~~n~l~---~~~p~~l~~l~~L~~L~L~~n~~~~--~~p~~l~~l~~L~~L~l~~n~l~~~~p~~l~ 179 (409)
...+.|+. ++++.|... +.++....++++|++|+|++|.+++ .+|..+..+++|++|+|++|.+++. ..+.
T Consensus 138 ~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~ 215 (267)
T 3rw6_A 138 RSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELD 215 (267)
T ss_dssp GGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGG
T ss_pred CCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhh
Confidence 33444444 556666322 1122222568899999999999987 5567777899999999999999865 3444
Q ss_pred CCC--CCCeEEeecCcCCCCCCC--------CCCCCCcCEEeC
Q 038636 180 GLR--SLTALRLSHNAFSGKIPS--------LTGAWQLHTLDL 212 (409)
Q Consensus 180 ~l~--~L~~L~L~~n~l~~~~~~--------~~~l~~L~~L~l 212 (409)
.+. +|++|+|++|.+.+.+|. +..+++|+.||-
T Consensus 216 ~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 216 KIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp GGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred hcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 444 899999999999876662 567788888874
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.11 E-value=1.5e-06 Score=72.59 Aligned_cols=33 Identities=12% Similarity=0.241 Sum_probs=13.0
Q ss_pred CcEEEccCCcCCccCCCCCCCCCCCCEEEccCC
Q 038636 275 VVSIDVSVNRLTAIEMTTLSGDTHLQELDVQGN 307 (409)
Q Consensus 275 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~n 307 (409)
|++||++++.++......+..+++|++|+|++|
T Consensus 63 L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C 95 (176)
T 3e4g_A 63 IQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKC 95 (176)
T ss_dssp EEEEEEESCCCCGGGGGGGTTCSCCCEEEEESC
T ss_pred EeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCC
Confidence 444444444433333333333444444444443
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.10 E-value=3e-06 Score=70.69 Aligned_cols=87 Identities=8% Similarity=-0.131 Sum_probs=71.3
Q ss_pred CCCCEEEccCCcCCCcchhhhcCCCCCCEEEccCC-eecccCchhHhhhc--cCCccEEEccCCc-CcccCchhhhcCCC
Q 038636 297 THLQELDVQGNLLRGHLPINLVSLRNLTSINLARN-QLSGHIPKVYGAKL--GSSWRSLFLDHNF-LWGNLPPEFSSSIT 372 (409)
Q Consensus 297 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~N-~l~~~~p~~~~~~~--~~~L~~L~L~~N~-l~~~~p~~~~~~~~ 372 (409)
..|++||++++.++..--..+.++++|+.|+|++| .++...-..++... .++|++|+|++|. ++..--..+.++++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 47999999999999776677889999999999999 58876666666531 1239999999984 88766667888999
Q ss_pred CCeEEcCCCcc
Q 038636 373 RIRGSLAKNCL 383 (409)
Q Consensus 373 L~~L~l~~N~l 383 (409)
|+.|++++++-
T Consensus 141 L~~L~L~~c~~ 151 (176)
T 3e4g_A 141 LKYLFLSDLPG 151 (176)
T ss_dssp CCEEEEESCTT
T ss_pred CCEEECCCCCC
Confidence 99999999863
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.67 E-value=5.5e-05 Score=64.22 Aligned_cols=113 Identities=10% Similarity=0.122 Sum_probs=59.0
Q ss_pred CCCCCcEEEccCC-cCCccCC----CCCCCCCCCCEEEccCCcCCCc----chhhhcCCCCCCEEEccCCeecccCchhH
Q 038636 271 TLPQVVSIDVSVN-RLTAIEM----TTLSGDTHLQELDVQGNLLRGH----LPINLVSLRNLTSINLARNQLSGHIPKVY 341 (409)
Q Consensus 271 ~l~~L~~L~L~~n-~l~~~~~----~~~~~~~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~N~l~~~~p~~~ 341 (409)
+-+.|++|+|++| ++..... ..+..-+.|+.|+|++|.+.+. +...+..-+.|+.|+|++|.|.......+
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3455666666553 4433111 1233445666666666666532 23334445667777777777765544444
Q ss_pred hhhc--cCCccEEEccCC---cCccc----CchhhhcCCCCCeEEcCCCcc
Q 038636 342 GAKL--GSSWRSLFLDHN---FLWGN----LPPEFSSSITRIRGSLAKNCL 383 (409)
Q Consensus 342 ~~~~--~~~L~~L~L~~N---~l~~~----~p~~~~~~~~L~~L~l~~N~l 383 (409)
+..- ++.|++|+|++| .+... +...+..-+.|..|+++.|..
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 4321 133777777654 33322 333445556677777766644
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.49 E-value=5.1e-05 Score=64.42 Aligned_cols=114 Identities=11% Similarity=0.168 Sum_probs=70.7
Q ss_pred cCCCCCCCEEEeeCC-cCCC----CCchhhcCCCCCcEEEccCCcCCccCCCCC----CCCCCCCEEEccCCcCCCc---
Q 038636 245 LRNLVNLKSLDLSSN-RFTG----AISHEVLTLPQVVSIDVSVNRLTAIEMTTL----SGDTHLQELDVQGNLLRGH--- 312 (409)
Q Consensus 245 l~~l~~L~~L~l~~n-~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~~~~L~~L~Ls~n~l~~~--- 312 (409)
+.+-+.|+.|+|++| .+.. .+.+.+..-..|+.|+|++|.+.......+ ..-+.|++|+|++|.|.+.
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 345567777777764 5542 234455666778888888888775433332 3456788888888888743
Q ss_pred -chhhhcCCCCCCEEEccCC---eecccCc----hhHhhhccCCccEEEccCCcCc
Q 038636 313 -LPINLVSLRNLTSINLARN---QLSGHIP----KVYGAKLGSSWRSLFLDHNFLW 360 (409)
Q Consensus 313 -~p~~l~~l~~L~~L~L~~N---~l~~~~p----~~~~~~~~~~L~~L~L~~N~l~ 360 (409)
+-+.+..-+.|+.|+|++| .+..... +.+... +.|++|+++.|.+.
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N--~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEEN--ESLLRVGISFASME 170 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHC--SSCCEEECCCCCHH
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhC--CCcCeEeccCCCcc
Confidence 3334555677888888765 3443322 333333 34888888877654
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.12 E-value=0.00068 Score=53.57 Aligned_cols=57 Identities=19% Similarity=0.229 Sum_probs=28.1
Q ss_pred EEEccCCeec-ccCchhHhhhccCCccEEEccCCcCcccCchhhhcCCCCCeEEcCCCccCC
Q 038636 325 SINLARNQLS-GHIPKVYGAKLGSSWRSLFLDHNFLWGNLPPEFSSSITRIRGSLAKNCLSC 385 (409)
Q Consensus 325 ~L~L~~N~l~-~~~p~~~~~~~~~~L~~L~L~~N~l~~~~p~~~~~~~~L~~L~l~~N~l~~ 385 (409)
.++.+++.++ ..+|..+. +++++|+|++|+|+..-+..|..+++|+.|+|++|+|.|
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp----~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C 69 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP----VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC 69 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC----TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred EEEeCCCCCccccCCCCCC----cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence 4455555543 23443221 235556666666553333344555556666666666633
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.47 E-value=0.0046 Score=48.69 Aligned_cols=53 Identities=28% Similarity=0.402 Sum_probs=26.0
Q ss_pred EEeCCCCCCC-CCCC-CCCCCCcEEEeecccCCCCCc-ccCCCCCCCEEEeeCCcC
Q 038636 209 TLDLDSNQLY-GNLP-KFPTSLRTLSLSHNLLSGHLS-SLRNLVNLKSLDLSSNRF 261 (409)
Q Consensus 209 ~L~l~~n~l~-~~~~-~~~~~L~~L~l~~n~l~~~~~-~l~~l~~L~~L~l~~n~l 261 (409)
.++.++++++ ..+| .++++|+.|+|++|.++...+ .|..+++|+.|+|.+|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4555555554 2333 344455555555555554444 444455555555555543
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=44.85 E-value=37 Score=24.54 Aligned_cols=45 Identities=16% Similarity=0.137 Sum_probs=25.3
Q ss_pred CCCCCccccCCCCCCcEEEccCCcCCCCCcccccCCCCCcEEeccC
Q 038636 98 YDGFLTPSIGNLTELTTLDLSRNNFRGPIPDTITDLRKLTTLYLPG 143 (409)
Q Consensus 98 l~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 143 (409)
++..-...|.+++.|+.+.|..+ ++..-..+|.++.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 33333445666777777766654 2223334566666666666654
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=42.65 E-value=36 Score=24.63 Aligned_cols=45 Identities=22% Similarity=0.182 Sum_probs=25.1
Q ss_pred CCCCCchhhcCCCCCcEEEccCCcCCccCCCCCCCCCCCCEEEccC
Q 038636 261 FTGAISHEVLTLPQVVSIDVSVNRLTAIEMTTLSGDTHLQELDVQG 306 (409)
Q Consensus 261 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~Ls~ 306 (409)
++..-...|.++.+|+.+.+..+ ++.+....|..|.+|+.+.+.+
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 33333445666666666666543 4444455666666666666654
Done!