Query 038637
Match_columns 962
No_of_seqs 535 out of 4354
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 13:05:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038637.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038637hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 5.5E-90 1.2E-94 815.0 43.4 820 22-938 14-856 (889)
2 PLN03210 Resistant to P. syrin 100.0 5.5E-64 1.2E-68 629.6 48.0 693 198-962 181-943 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.8E-43 3.9E-48 381.8 15.2 279 206-491 1-285 (287)
4 PLN00113 leucine-rich repeat r 99.9 2.7E-24 5.9E-29 271.9 19.7 350 580-960 89-486 (968)
5 PLN00113 leucine-rich repeat r 99.9 1.3E-23 2.7E-28 265.9 16.9 352 580-960 184-558 (968)
6 PLN03210 Resistant to P. syrin 99.8 1.2E-19 2.7E-24 229.2 20.6 316 606-962 549-906 (1153)
7 KOG0444 Cytoskeletal regulator 99.8 1.7E-22 3.6E-27 215.9 -6.2 322 559-924 55-379 (1255)
8 KOG0444 Cytoskeletal regulator 99.8 2.9E-21 6.4E-26 206.4 -5.6 317 579-941 50-375 (1255)
9 KOG4194 Membrane glycoprotein 99.7 7.2E-19 1.6E-23 187.5 4.1 354 558-957 77-447 (873)
10 KOG0472 Leucine-rich repeat pr 99.7 1.2E-19 2.6E-24 185.3 -4.7 221 612-857 88-308 (565)
11 KOG4194 Membrane glycoprotein 99.7 2.7E-18 5.9E-23 183.2 3.5 320 577-937 117-448 (873)
12 KOG0618 Serine/threonine phosp 99.6 1.4E-16 3E-21 179.7 -2.4 155 790-961 302-488 (1081)
13 KOG0618 Serine/threonine phosp 99.6 1.5E-16 3.3E-21 179.4 -4.3 301 613-939 43-418 (1081)
14 KOG0472 Leucine-rich repeat pr 99.5 3.3E-16 7.2E-21 160.4 -3.4 273 576-887 220-539 (565)
15 PRK15387 E3 ubiquitin-protein 99.5 6.5E-14 1.4E-18 164.1 13.6 250 617-939 203-456 (788)
16 KOG4658 Apoptotic ATPase [Sign 99.4 9.4E-14 2E-18 166.5 4.6 326 579-959 518-856 (889)
17 PRK15370 E3 ubiquitin-protein 99.4 4.4E-13 9.6E-18 158.4 9.4 241 616-940 179-427 (754)
18 PRK04841 transcriptional regul 99.4 1.6E-11 3.4E-16 155.2 23.9 292 202-538 15-332 (903)
19 PRK15387 E3 ubiquitin-protein 99.3 5.6E-12 1.2E-16 148.0 13.3 225 614-927 241-465 (788)
20 PRK00411 cdc6 cell division co 99.3 1.8E-10 3.9E-15 130.3 24.9 302 199-517 28-358 (394)
21 KOG0617 Ras suppressor protein 99.3 4.7E-14 1E-18 128.0 -5.5 165 636-844 30-194 (264)
22 PRK15370 E3 ubiquitin-protein 99.3 5.5E-12 1.2E-16 149.2 9.4 227 615-917 199-426 (754)
23 KOG0617 Ras suppressor protein 99.3 1E-13 2.2E-18 125.8 -5.7 155 576-743 25-180 (264)
24 TIGR02928 orc1/cdc6 family rep 99.2 2.9E-09 6.3E-14 119.2 27.9 302 201-518 15-351 (365)
25 TIGR03015 pepcterm_ATPase puta 99.1 2.7E-09 5.9E-14 113.9 20.6 182 228-415 43-242 (269)
26 KOG4237 Extracellular matrix p 99.1 3.8E-12 8.3E-17 131.0 -3.7 115 603-719 79-197 (498)
27 PRK00080 ruvB Holliday junctio 99.0 2.2E-09 4.8E-14 117.3 14.4 278 201-518 25-311 (328)
28 TIGR00635 ruvB Holliday juncti 99.0 3E-09 6.5E-14 115.7 15.3 278 201-518 4-290 (305)
29 PF01637 Arch_ATPase: Archaeal 99.0 1.1E-09 2.4E-14 114.4 10.0 196 203-410 1-233 (234)
30 COG2909 MalT ATP-dependent tra 99.0 4.4E-08 9.5E-13 111.9 21.9 296 202-540 20-340 (894)
31 cd00116 LRR_RI Leucine-rich re 98.9 1.4E-10 3E-15 127.6 -0.8 267 611-916 19-317 (319)
32 KOG4237 Extracellular matrix p 98.9 4.9E-11 1.1E-15 123.0 -6.0 102 617-720 69-174 (498)
33 PTZ00112 origin recognition co 98.9 1.6E-07 3.4E-12 108.1 20.8 302 200-517 754-1086(1164)
34 cd00116 LRR_RI Leucine-rich re 98.9 1.7E-10 3.7E-15 126.8 -2.9 282 620-938 3-317 (319)
35 PF05729 NACHT: NACHT domain 98.8 9.5E-09 2E-13 100.9 9.4 142 229-377 1-162 (166)
36 COG3899 Predicted ATPase [Gene 98.8 7.3E-08 1.6E-12 116.9 15.6 312 202-538 1-386 (849)
37 COG2256 MGS1 ATPase related to 98.7 8E-08 1.7E-12 100.8 12.0 172 200-408 29-209 (436)
38 PRK06893 DNA replication initi 98.6 3.7E-07 8E-12 94.0 13.4 156 228-415 39-207 (229)
39 PF14580 LRR_9: Leucine-rich r 98.6 3.4E-08 7.4E-13 95.2 4.8 132 578-721 13-151 (175)
40 PRK13342 recombination factor 98.6 7.6E-07 1.6E-11 100.4 15.8 178 201-413 12-198 (413)
41 KOG3207 Beta-tubulin folding c 98.5 2.9E-08 6.3E-13 104.4 1.6 211 636-916 118-336 (505)
42 COG4886 Leucine-rich repeat (L 98.5 9E-08 1.9E-12 108.4 4.2 181 612-840 113-294 (394)
43 PRK05564 DNA polymerase III su 98.5 3.9E-06 8.5E-11 91.2 16.6 180 201-411 4-190 (313)
44 PF13401 AAA_22: AAA domain; P 98.4 2.8E-07 6.1E-12 86.2 6.0 118 227-347 3-125 (131)
45 TIGR03420 DnaA_homol_Hda DnaA 98.4 2.2E-06 4.7E-11 88.8 12.9 170 206-413 22-203 (226)
46 KOG2028 ATPase related to the 98.4 2.7E-06 5.9E-11 87.4 12.9 158 226-406 160-331 (554)
47 PRK14961 DNA polymerase III su 98.4 5.8E-06 1.3E-10 91.5 16.8 197 201-409 16-218 (363)
48 PRK07003 DNA polymerase III su 98.4 7E-06 1.5E-10 94.7 17.4 199 201-412 16-222 (830)
49 KOG0532 Leucine-rich repeat (L 98.4 1.2E-08 2.5E-13 110.6 -5.0 191 619-886 79-270 (722)
50 KOG0532 Leucine-rich repeat (L 98.4 1.4E-08 3.1E-13 109.9 -4.6 106 605-715 89-194 (722)
51 PRK12402 replication factor C 98.4 3.7E-06 8.1E-11 93.0 14.0 199 201-410 15-225 (337)
52 PF13191 AAA_16: AAA ATPase do 98.4 7.6E-07 1.7E-11 89.0 7.7 48 202-252 1-48 (185)
53 cd01128 rho_factor Transcripti 98.3 7.4E-07 1.6E-11 91.8 6.9 91 227-318 15-113 (249)
54 PRK14960 DNA polymerase III su 98.3 6.9E-06 1.5E-10 93.7 15.1 181 201-409 15-217 (702)
55 KOG4341 F-box protein containi 98.3 1.8E-08 4E-13 105.3 -5.0 287 616-941 139-439 (483)
56 PRK14949 DNA polymerase III su 98.3 6.3E-06 1.4E-10 97.0 15.0 199 201-411 16-220 (944)
57 TIGR02903 spore_lon_C ATP-depe 98.3 9.6E-06 2.1E-10 95.4 16.6 202 201-412 154-396 (615)
58 PRK14963 DNA polymerase III su 98.3 1.6E-06 3.4E-11 99.0 9.6 195 201-408 14-214 (504)
59 COG1474 CDC6 Cdc6-related prot 98.3 2.4E-05 5.2E-10 85.5 18.3 205 202-412 18-239 (366)
60 PF13173 AAA_14: AAA domain 98.3 7.4E-07 1.6E-11 82.7 5.1 120 228-370 2-127 (128)
61 PRK12323 DNA polymerase III su 98.3 1E-05 2.2E-10 92.2 14.9 200 201-411 16-225 (700)
62 PLN03025 replication factor C 98.3 6.2E-06 1.3E-10 89.8 13.0 181 201-407 13-196 (319)
63 PRK04195 replication factor C 98.3 3.2E-05 7E-10 89.1 19.5 247 201-490 14-271 (482)
64 cd00009 AAA The AAA+ (ATPases 98.3 3.3E-06 7.1E-11 80.8 9.6 124 204-348 1-130 (151)
65 PF05496 RuvB_N: Holliday junc 98.3 5.5E-06 1.2E-10 81.6 10.5 178 201-412 24-222 (233)
66 COG4886 Leucine-rich repeat (L 98.3 7.6E-07 1.6E-11 100.9 4.9 197 618-862 96-293 (394)
67 PRK08727 hypothetical protein; 98.2 1.7E-05 3.8E-10 81.8 14.2 148 229-408 42-201 (233)
68 PRK14957 DNA polymerase III su 98.2 1.2E-05 2.6E-10 91.9 14.1 184 201-412 16-222 (546)
69 KOG1259 Nischarin, modulator o 98.2 3.4E-07 7.4E-12 91.4 1.1 59 797-858 351-411 (490)
70 PTZ00202 tuzin; Provisional 98.2 1.8E-05 3.8E-10 85.1 13.8 167 199-377 260-433 (550)
71 PRK13341 recombination factor 98.2 7.4E-06 1.6E-10 97.1 12.0 172 201-406 28-212 (725)
72 PLN03150 hypothetical protein; 98.2 1.5E-06 3.4E-11 103.0 6.3 94 616-709 419-513 (623)
73 PF13855 LRR_8: Leucine rich r 98.2 1.6E-06 3.5E-11 68.4 4.4 57 615-672 1-59 (61)
74 PRK00440 rfc replication facto 98.2 2.4E-05 5.2E-10 85.8 15.4 180 201-408 17-200 (319)
75 PRK14956 DNA polymerase III su 98.2 3.8E-06 8.3E-11 93.2 8.8 196 201-408 18-219 (484)
76 PRK06645 DNA polymerase III su 98.2 3.4E-05 7.4E-10 87.7 16.3 199 201-408 21-226 (507)
77 KOG3207 Beta-tubulin folding c 98.2 3.9E-07 8.5E-12 96.1 0.4 87 610-697 167-257 (505)
78 PRK08691 DNA polymerase III su 98.2 2E-05 4.4E-10 90.9 14.1 197 201-410 16-219 (709)
79 PRK14951 DNA polymerase III su 98.2 3.6E-05 7.9E-10 89.2 15.8 198 201-410 16-224 (618)
80 PRK07940 DNA polymerase III su 98.1 4.2E-05 9.2E-10 84.5 15.6 183 201-411 5-213 (394)
81 PF14580 LRR_9: Leucine-rich r 98.1 1.5E-06 3.3E-11 83.8 3.8 82 612-697 16-99 (175)
82 PRK07994 DNA polymerase III su 98.1 2.3E-05 5.1E-10 90.9 14.0 195 201-411 16-220 (647)
83 PLN03150 hypothetical protein; 98.1 4.8E-06 1E-10 98.8 8.6 109 586-701 420-530 (623)
84 TIGR00678 holB DNA polymerase 98.1 5.1E-05 1.1E-09 75.8 14.8 90 307-406 95-186 (188)
85 PRK09376 rho transcription ter 98.1 4.9E-06 1.1E-10 89.1 7.6 101 212-318 158-266 (416)
86 COG3903 Predicted ATPase [Gene 98.1 3.9E-06 8.6E-11 89.1 6.7 289 227-536 13-312 (414)
87 TIGR02397 dnaX_nterm DNA polym 98.1 6.3E-05 1.4E-09 83.9 16.9 183 201-412 14-219 (355)
88 PRK14964 DNA polymerase III su 98.1 5.3E-05 1.2E-09 85.4 16.0 180 201-408 13-214 (491)
89 PRK14958 DNA polymerase III su 98.1 3.8E-05 8.3E-10 88.0 15.1 182 201-410 16-219 (509)
90 PRK05642 DNA replication initi 98.1 3.2E-05 6.9E-10 79.8 13.1 155 228-414 45-211 (234)
91 PRK05896 DNA polymerase III su 98.1 4.5E-05 9.8E-10 87.2 15.2 197 201-413 16-223 (605)
92 PRK07471 DNA polymerase III su 98.1 6.7E-05 1.5E-09 82.2 16.1 193 201-412 19-239 (365)
93 PRK09112 DNA polymerase III su 98.1 6.9E-05 1.5E-09 81.7 16.0 197 201-412 23-241 (351)
94 PRK08084 DNA replication initi 98.1 3.4E-05 7.3E-10 79.8 12.8 154 228-413 45-211 (235)
95 PRK14962 DNA polymerase III su 98.1 3.4E-05 7.4E-10 87.4 13.7 186 201-414 14-222 (472)
96 PRK14955 DNA polymerase III su 98.1 4.1E-05 8.9E-10 85.8 13.7 195 201-409 16-226 (397)
97 KOG2227 Pre-initiation complex 98.1 0.0001 2.2E-09 79.3 15.7 213 200-415 149-376 (529)
98 PRK08903 DnaA regulatory inact 98.0 4.1E-05 8.9E-10 79.2 12.4 153 227-415 41-203 (227)
99 PF13855 LRR_8: Leucine rich r 98.0 5.3E-06 1.1E-10 65.4 4.4 58 639-697 1-60 (61)
100 PF00308 Bac_DnaA: Bacterial d 98.0 3.7E-05 8.1E-10 78.3 11.8 186 202-411 10-208 (219)
101 KOG2120 SCF ubiquitin ligase, 98.0 1.2E-07 2.7E-12 94.7 -6.2 84 798-886 286-373 (419)
102 PRK09087 hypothetical protein; 98.0 3.1E-05 6.7E-10 79.2 10.4 143 228-412 44-196 (226)
103 PRK14969 DNA polymerase III su 98.0 8.7E-05 1.9E-09 85.7 14.9 184 201-411 16-221 (527)
104 PRK09111 DNA polymerase III su 98.0 9.9E-05 2.1E-09 85.9 15.0 199 201-412 24-234 (598)
105 TIGR00767 rho transcription te 98.0 1.4E-05 2.9E-10 86.3 7.3 91 227-318 167-265 (415)
106 TIGR01242 26Sp45 26S proteasom 98.0 9.6E-06 2.1E-10 90.1 6.5 181 199-405 120-328 (364)
107 KOG0989 Replication factor C, 98.0 5.2E-05 1.1E-09 77.1 10.6 183 201-405 36-224 (346)
108 KOG1259 Nischarin, modulator o 97.9 1.6E-06 3.6E-11 86.7 -0.4 130 763-920 283-412 (490)
109 KOG1909 Ran GTPase-activating 97.9 1.2E-06 2.5E-11 90.2 -1.8 86 611-697 26-131 (382)
110 PRK14970 DNA polymerase III su 97.9 0.00021 4.6E-09 79.8 16.1 184 201-412 17-211 (367)
111 PRK14959 DNA polymerase III su 97.9 0.00018 4E-09 82.8 15.5 199 201-415 16-225 (624)
112 PRK14950 DNA polymerase III su 97.9 0.00022 4.7E-09 84.1 16.6 197 201-412 16-222 (585)
113 PRK14087 dnaA chromosomal repl 97.9 0.00019 4E-09 81.4 15.3 168 228-412 141-320 (450)
114 PRK07764 DNA polymerase III su 97.9 0.00017 3.7E-09 86.9 15.1 197 201-409 15-219 (824)
115 PF12799 LRR_4: Leucine Rich r 97.9 1.7E-05 3.6E-10 57.2 3.9 33 640-672 2-34 (44)
116 PRK14954 DNA polymerase III su 97.9 0.00017 3.6E-09 84.1 14.1 202 201-411 16-229 (620)
117 PF12799 LRR_4: Leucine Rich r 97.9 1.8E-05 4E-10 57.0 3.9 41 615-656 1-41 (44)
118 PRK14952 DNA polymerase III su 97.9 0.00035 7.6E-09 80.9 16.5 199 201-415 13-224 (584)
119 PHA02544 44 clamp loader, smal 97.8 0.00013 2.7E-09 79.9 12.2 148 201-376 21-171 (316)
120 PF05621 TniB: Bacterial TniB 97.8 0.00033 7.1E-09 72.7 14.0 194 209-407 45-257 (302)
121 PRK07133 DNA polymerase III su 97.8 0.00038 8.3E-09 81.5 16.1 195 201-412 18-221 (725)
122 PRK14953 DNA polymerase III su 97.8 0.00053 1.1E-08 78.3 16.9 184 201-412 16-221 (486)
123 TIGR03345 VI_ClpV1 type VI sec 97.8 0.00016 3.5E-09 88.3 13.1 179 201-405 187-390 (852)
124 TIGR02881 spore_V_K stage V sp 97.8 0.00021 4.5E-09 75.4 12.1 161 202-379 7-192 (261)
125 PRK15386 type III secretion pr 97.8 7.7E-05 1.7E-09 81.0 8.7 60 614-679 51-111 (426)
126 CHL00181 cbbX CbbX; Provisiona 97.8 0.00058 1.3E-08 72.5 15.3 135 228-379 59-210 (287)
127 PF14516 AAA_35: AAA-like doma 97.7 0.0044 9.5E-08 67.6 22.1 201 201-418 11-246 (331)
128 KOG1909 Ran GTPase-activating 97.7 4E-06 8.7E-11 86.3 -1.7 212 611-858 54-310 (382)
129 COG2255 RuvB Holliday junction 97.7 0.0015 3.2E-08 66.1 16.1 189 201-408 26-220 (332)
130 PRK08451 DNA polymerase III su 97.7 0.00068 1.5E-08 77.3 15.8 179 201-411 14-218 (535)
131 PRK06305 DNA polymerase III su 97.7 0.00053 1.2E-08 77.7 14.9 195 201-412 17-224 (451)
132 PRK14948 DNA polymerase III su 97.7 0.00067 1.4E-08 79.7 16.0 197 201-411 16-222 (620)
133 KOG2543 Origin recognition com 97.7 0.00021 4.6E-09 74.9 10.3 167 200-376 5-191 (438)
134 PRK14971 DNA polymerase III su 97.7 0.00078 1.7E-08 79.2 16.3 179 201-408 17-219 (614)
135 KOG4341 F-box protein containi 97.7 1.7E-06 3.6E-11 91.0 -5.1 307 584-936 138-460 (483)
136 TIGR02639 ClpA ATP-dependent C 97.7 0.00022 4.8E-09 86.5 12.1 155 201-378 182-358 (731)
137 PRK03992 proteasome-activating 97.6 9.6E-05 2.1E-09 82.5 7.4 180 200-405 130-337 (389)
138 PRK06647 DNA polymerase III su 97.6 0.0013 2.9E-08 76.3 16.9 199 201-411 16-220 (563)
139 PRK15386 type III secretion pr 97.6 0.00016 3.4E-09 78.7 8.6 137 797-961 71-212 (426)
140 KOG0531 Protein phosphatase 1, 97.6 1.5E-05 3.2E-10 90.5 0.5 100 611-715 91-191 (414)
141 TIGR00362 DnaA chromosomal rep 97.6 0.00079 1.7E-08 76.2 14.4 158 228-408 136-307 (405)
142 KOG2120 SCF ubiquitin ligase, 97.6 1.4E-06 3E-11 87.3 -7.0 164 755-941 201-376 (419)
143 TIGR02880 cbbX_cfxQ probable R 97.6 0.00054 1.2E-08 72.9 12.0 133 229-378 59-208 (284)
144 PRK11331 5-methylcytosine-spec 97.6 0.00026 5.6E-09 78.0 9.6 109 201-321 175-285 (459)
145 PRK06620 hypothetical protein; 97.6 0.0008 1.7E-08 68.2 12.5 135 229-409 45-187 (214)
146 KOG3665 ZYG-1-like serine/thre 97.6 3.3E-05 7.1E-10 91.4 2.6 134 639-775 122-261 (699)
147 PRK14965 DNA polymerase III su 97.6 0.0012 2.7E-08 77.3 15.5 196 201-412 16-222 (576)
148 KOG0531 Protein phosphatase 1, 97.5 1.5E-05 3.3E-10 90.4 -0.5 99 613-716 70-168 (414)
149 PRK14088 dnaA chromosomal repl 97.5 0.0013 2.7E-08 74.7 14.4 159 228-408 130-302 (440)
150 CHL00095 clpC Clp protease ATP 97.5 0.00048 1E-08 84.7 11.9 155 201-376 179-352 (821)
151 PRK05563 DNA polymerase III su 97.5 0.0023 5E-08 74.7 16.7 193 201-409 16-218 (559)
152 PRK00149 dnaA chromosomal repl 97.5 0.0011 2.3E-08 76.1 13.8 159 227-408 147-319 (450)
153 PRK14086 dnaA chromosomal repl 97.5 0.0017 3.7E-08 74.7 15.1 157 229-408 315-485 (617)
154 PRK12422 chromosomal replicati 97.5 0.00094 2E-08 75.4 12.4 154 228-404 141-306 (445)
155 PRK05707 DNA polymerase III su 97.5 0.0026 5.6E-08 68.9 15.1 97 307-411 105-203 (328)
156 PRK07399 DNA polymerase III su 97.4 0.0027 5.9E-08 68.3 14.9 196 201-410 4-220 (314)
157 TIGR03346 chaperone_ClpB ATP-d 97.4 0.00091 2E-08 82.5 12.8 157 201-378 173-349 (852)
158 PF05673 DUF815: Protein of un 97.4 0.0043 9.4E-08 62.4 15.0 108 198-333 24-132 (249)
159 COG0593 DnaA ATPase involved i 97.4 0.00088 1.9E-08 73.1 10.9 136 227-380 112-259 (408)
160 PRK11034 clpA ATP-dependent Cl 97.4 0.00069 1.5E-08 81.2 10.1 156 201-378 186-362 (758)
161 KOG4579 Leucine-rich repeat (L 97.3 1.5E-05 3.2E-10 70.8 -3.0 96 617-715 29-128 (177)
162 PRK10865 protein disaggregatio 97.3 0.0019 4E-08 79.5 13.7 45 201-251 178-222 (857)
163 KOG2982 Uncharacterized conser 97.3 7.7E-05 1.7E-09 75.1 1.2 201 612-854 68-287 (418)
164 PTZ00361 26 proteosome regulat 97.2 0.00097 2.1E-08 74.6 9.1 157 201-378 183-367 (438)
165 PRK08116 hypothetical protein; 97.2 0.00053 1.2E-08 72.1 6.7 103 229-347 115-220 (268)
166 PF00004 AAA: ATPase family as 97.2 0.00042 9.2E-09 64.6 5.4 21 231-251 1-21 (132)
167 smart00382 AAA ATPases associa 97.2 0.0011 2.3E-08 62.7 7.7 87 229-320 3-90 (148)
168 TIGR00602 rad24 checkpoint pro 97.2 0.0016 3.6E-08 75.9 10.5 50 201-251 84-133 (637)
169 PRK08769 DNA polymerase III su 97.1 0.012 2.7E-07 63.0 15.7 96 307-412 112-209 (319)
170 TIGR03689 pup_AAA proteasome A 97.1 0.0024 5.3E-08 72.5 10.7 165 201-378 182-378 (512)
171 PRK08118 topology modulation p 97.1 0.0002 4.4E-09 69.5 1.8 35 229-263 2-37 (167)
172 PTZ00454 26S protease regulato 97.1 0.0015 3.2E-08 72.6 8.5 180 200-405 144-351 (398)
173 PRK10536 hypothetical protein; 97.1 0.0059 1.3E-07 62.3 12.0 134 201-347 55-212 (262)
174 PRK08058 DNA polymerase III su 97.1 0.0079 1.7E-07 65.6 13.9 168 202-377 6-181 (329)
175 KOG3665 ZYG-1-like serine/thre 97.1 0.00039 8.6E-09 82.4 4.1 110 581-698 145-262 (699)
176 COG1373 Predicted ATPase (AAA+ 97.0 0.0049 1.1E-07 68.8 12.1 146 230-410 39-191 (398)
177 CHL00176 ftsH cell division pr 97.0 0.0032 6.9E-08 74.2 11.0 178 201-404 183-387 (638)
178 COG3267 ExeA Type II secretory 97.0 0.014 2.9E-07 58.7 13.5 183 226-413 49-247 (269)
179 PF04665 Pox_A32: Poxvirus A32 97.0 0.0013 2.8E-08 66.7 6.5 36 229-266 14-49 (241)
180 TIGR01241 FtsH_fam ATP-depende 97.0 0.0047 1E-07 71.7 11.4 180 200-405 54-260 (495)
181 KOG0991 Replication factor C, 97.0 0.0055 1.2E-07 59.9 9.8 44 201-250 27-70 (333)
182 PRK06090 DNA polymerase III su 97.0 0.019 4.2E-07 61.5 15.1 93 307-411 107-201 (319)
183 PRK06871 DNA polymerase III su 96.9 0.028 6E-07 60.5 16.1 179 210-408 11-200 (325)
184 PRK09361 radB DNA repair and r 96.9 0.0041 9E-08 64.1 9.6 46 227-275 22-67 (225)
185 KOG4579 Leucine-rich repeat (L 96.9 0.00018 4E-09 64.1 -0.4 76 604-681 66-141 (177)
186 COG5238 RNA1 Ran GTPase-activa 96.9 4.9E-05 1.1E-09 75.4 -4.6 85 612-697 27-131 (388)
187 PF10443 RNA12: RNA12 protein; 96.9 0.024 5.2E-07 61.8 15.3 200 206-421 1-288 (431)
188 smart00763 AAA_PrkA PrkA AAA d 96.9 0.00095 2.1E-08 71.6 4.4 51 202-252 52-102 (361)
189 PRK08181 transposase; Validate 96.9 0.0017 3.8E-08 67.8 6.1 100 229-347 107-208 (269)
190 COG5238 RNA1 Ran GTPase-activa 96.9 0.00023 5.1E-09 70.8 -0.3 15 902-916 299-313 (388)
191 PF13177 DNA_pol3_delta2: DNA 96.9 0.0068 1.5E-07 58.6 9.8 122 205-349 1-143 (162)
192 cd01123 Rad51_DMC1_radA Rad51_ 96.8 0.0042 9E-08 64.7 8.8 90 227-317 18-124 (235)
193 PRK12608 transcription termina 96.8 0.0071 1.5E-07 65.3 10.4 102 210-317 120-229 (380)
194 TIGR03345 VI_ClpV1 type VI sec 96.8 0.0038 8.3E-08 76.5 9.1 137 201-347 566-718 (852)
195 KOG1514 Origin recognition com 96.7 0.038 8.1E-07 63.2 15.4 202 202-414 397-624 (767)
196 TIGR02640 gas_vesic_GvpN gas v 96.7 0.021 4.6E-07 60.1 13.0 55 209-276 10-64 (262)
197 PRK10787 DNA-binding ATP-depen 96.7 0.0036 7.8E-08 75.8 8.0 165 201-378 322-506 (784)
198 KOG2004 Mitochondrial ATP-depe 96.7 0.026 5.6E-07 64.4 13.9 104 200-317 410-514 (906)
199 PRK08939 primosomal protein Dn 96.7 0.0051 1.1E-07 65.9 8.2 122 205-347 135-260 (306)
200 TIGR00763 lon ATP-dependent pr 96.7 0.013 2.7E-07 71.9 12.5 51 201-251 320-370 (775)
201 PRK07993 DNA polymerase III su 96.6 0.063 1.4E-06 58.4 16.4 179 209-409 10-202 (334)
202 PRK07261 topology modulation p 96.6 0.0042 9.1E-08 60.7 6.7 66 230-319 2-68 (171)
203 TIGR02237 recomb_radB DNA repa 96.6 0.0067 1.5E-07 61.7 8.4 49 226-277 10-58 (209)
204 KOG0741 AAA+-type ATPase [Post 96.6 0.047 1E-06 60.0 14.7 149 226-401 536-704 (744)
205 TIGR03346 chaperone_ClpB ATP-d 96.5 0.0092 2E-07 73.8 9.8 124 201-333 565-692 (852)
206 PRK06921 hypothetical protein; 96.5 0.007 1.5E-07 63.6 7.4 37 228-266 117-154 (266)
207 KOG1859 Leucine-rich repeat pr 96.4 0.00042 9E-09 78.2 -2.0 105 580-697 183-290 (1096)
208 PRK12377 putative replication 96.4 0.014 3E-07 60.3 9.2 102 228-347 101-205 (248)
209 PRK06526 transposase; Provisio 96.4 0.0036 7.8E-08 65.1 4.9 23 229-251 99-121 (254)
210 COG0466 Lon ATP-dependent Lon 96.4 0.0022 4.8E-08 73.1 3.5 165 200-378 322-508 (782)
211 KOG2982 Uncharacterized conser 96.4 0.00092 2E-08 67.6 0.5 79 615-697 45-132 (418)
212 PRK09183 transposase/IS protei 96.4 0.0049 1.1E-07 64.6 5.8 23 229-251 103-125 (259)
213 KOG1859 Leucine-rich repeat pr 96.4 8.9E-05 1.9E-09 83.4 -7.5 83 611-697 183-265 (1096)
214 COG1222 RPT1 ATP-dependent 26S 96.4 0.058 1.2E-06 56.8 13.2 188 201-415 151-371 (406)
215 PRK06964 DNA polymerase III su 96.4 0.057 1.2E-06 58.6 13.9 94 307-412 131-226 (342)
216 PF08423 Rad51: Rad51; InterP 96.4 0.0085 1.9E-07 62.6 7.5 90 227-317 37-142 (256)
217 PRK10865 protein disaggregatio 96.4 0.009 2E-07 73.5 8.7 123 201-333 568-695 (857)
218 TIGR02639 ClpA ATP-dependent C 96.4 0.012 2.5E-07 71.8 9.5 121 201-333 454-578 (731)
219 KOG2228 Origin recognition com 96.4 0.032 6.9E-07 58.1 11.0 172 202-378 25-219 (408)
220 PF02562 PhoH: PhoH-like prote 96.4 0.011 2.4E-07 58.7 7.6 127 205-347 4-155 (205)
221 PF01695 IstB_IS21: IstB-like 96.3 0.0029 6.3E-08 62.0 3.5 100 228-347 47-149 (178)
222 COG0470 HolB ATPase involved i 96.3 0.016 3.5E-07 63.6 9.8 125 202-347 2-148 (325)
223 PRK05541 adenylylsulfate kinas 96.3 0.0068 1.5E-07 59.7 6.0 36 227-264 6-41 (176)
224 cd01393 recA_like RecA is a b 96.3 0.022 4.8E-07 58.7 10.1 89 227-318 18-124 (226)
225 COG2812 DnaX DNA polymerase II 96.3 0.013 2.7E-07 66.3 8.6 188 201-406 16-215 (515)
226 PRK11889 flhF flagellar biosyn 96.3 0.024 5.2E-07 61.5 10.1 88 227-318 240-330 (436)
227 cd00983 recA RecA is a bacter 96.3 0.0079 1.7E-07 64.2 6.6 85 226-317 53-142 (325)
228 PF13207 AAA_17: AAA domain; P 96.3 0.0028 6E-08 58.1 2.7 22 230-251 1-22 (121)
229 PF07728 AAA_5: AAA domain (dy 96.3 0.0014 3E-08 61.9 0.7 42 231-277 2-43 (139)
230 KOG1644 U2-associated snRNP A' 96.3 0.0063 1.4E-07 58.5 5.0 79 616-697 43-124 (233)
231 TIGR02012 tigrfam_recA protein 96.2 0.0089 1.9E-07 63.8 6.7 86 226-318 53-143 (321)
232 PRK06696 uridine kinase; Valid 96.2 0.0056 1.2E-07 62.9 4.9 44 205-251 2-45 (223)
233 PRK15455 PrkA family serine pr 96.2 0.0032 7E-08 71.0 3.2 49 202-250 77-125 (644)
234 CHL00195 ycf46 Ycf46; Provisio 96.2 0.017 3.7E-07 65.9 9.0 181 201-405 228-429 (489)
235 cd01394 radB RadB. The archaea 96.2 0.025 5.5E-07 57.9 9.6 43 227-271 18-60 (218)
236 PRK07952 DNA replication prote 96.2 0.029 6.4E-07 57.8 9.8 83 228-327 99-181 (244)
237 PRK04296 thymidine kinase; Pro 96.2 0.0071 1.5E-07 60.2 5.2 114 229-349 3-117 (190)
238 CHL00095 clpC Clp protease ATP 96.1 0.016 3.4E-07 71.6 9.2 124 201-334 509-637 (821)
239 COG2607 Predicted ATPase (AAA+ 96.1 0.033 7.3E-07 55.1 9.4 121 199-347 58-182 (287)
240 PRK09354 recA recombinase A; P 96.1 0.012 2.7E-07 63.3 7.1 86 226-318 58-148 (349)
241 TIGR02902 spore_lonB ATP-depen 96.1 0.016 3.5E-07 67.4 8.6 44 201-250 65-108 (531)
242 PF00448 SRP54: SRP54-type pro 96.1 0.02 4.4E-07 57.0 8.1 57 228-286 1-58 (196)
243 PRK04132 replication factor C 96.1 0.072 1.6E-06 64.3 13.8 154 236-410 574-730 (846)
244 PHA00729 NTP-binding motif con 96.0 0.025 5.3E-07 56.9 8.2 24 227-250 16-39 (226)
245 PF00158 Sigma54_activat: Sigm 96.0 0.0096 2.1E-07 57.7 5.3 45 203-251 1-45 (168)
246 PRK08699 DNA polymerase III su 96.0 0.067 1.4E-06 58.0 12.2 71 307-377 112-184 (325)
247 PRK04301 radA DNA repair and r 96.0 0.028 6E-07 61.2 9.4 57 227-284 101-161 (317)
248 TIGR02238 recomb_DMC1 meiotic 96.0 0.021 4.5E-07 61.4 8.0 58 227-285 95-156 (313)
249 cd01133 F1-ATPase_beta F1 ATP 96.0 0.023 4.9E-07 59.1 8.0 88 228-317 69-172 (274)
250 PLN03187 meiotic recombination 95.9 0.022 4.9E-07 61.6 8.0 59 227-286 125-187 (344)
251 PF00560 LRR_1: Leucine Rich R 95.9 0.0035 7.5E-08 37.5 1.0 19 641-659 2-20 (22)
252 TIGR03499 FlhF flagellar biosy 95.9 0.028 6.2E-07 59.7 8.6 87 227-317 193-281 (282)
253 COG0468 RecA RecA/RadA recombi 95.9 0.037 7.9E-07 57.8 9.1 89 226-317 58-150 (279)
254 PF07693 KAP_NTPase: KAP famil 95.9 0.22 4.7E-06 54.7 15.8 42 207-251 2-43 (325)
255 TIGR02239 recomb_RAD51 DNA rep 95.8 0.034 7.4E-07 60.0 8.8 58 227-285 95-156 (316)
256 COG0542 clpA ATP-binding subun 95.8 0.015 3.3E-07 68.4 6.6 120 201-335 491-620 (786)
257 PF14532 Sigma54_activ_2: Sigm 95.8 0.004 8.7E-08 58.5 1.5 107 204-347 1-109 (138)
258 TIGR01243 CDC48 AAA family ATP 95.8 0.031 6.6E-07 68.4 9.4 180 201-406 178-382 (733)
259 KOG0733 Nuclear AAA ATPase (VC 95.7 0.03 6.6E-07 62.7 8.1 97 201-318 190-292 (802)
260 cd01120 RecA-like_NTPases RecA 95.7 0.045 9.7E-07 53.0 8.7 40 230-271 1-40 (165)
261 PRK08233 hypothetical protein; 95.7 0.03 6.5E-07 55.5 7.5 24 228-251 3-26 (182)
262 COG0542 clpA ATP-binding subun 95.7 0.024 5.2E-07 66.9 7.5 155 201-377 170-345 (786)
263 COG1618 Predicted nucleotide k 95.7 0.01 2.2E-07 55.0 3.5 23 229-251 6-28 (179)
264 COG0572 Udk Uridine kinase [Nu 95.7 0.021 4.6E-07 56.6 6.0 79 226-309 6-85 (218)
265 KOG0735 AAA+-type ATPase [Post 95.6 0.032 6.9E-07 63.6 7.9 93 200-317 407-503 (952)
266 KOG2123 Uncharacterized conser 95.6 0.00091 2E-08 67.0 -3.7 60 611-672 37-98 (388)
267 TIGR01243 CDC48 AAA family ATP 95.6 0.083 1.8E-06 64.7 12.2 179 201-405 453-657 (733)
268 TIGR02236 recomb_radA DNA repa 95.5 0.061 1.3E-06 58.4 9.7 57 227-284 94-154 (310)
269 cd00561 CobA_CobO_BtuR ATP:cor 95.5 0.038 8.3E-07 52.4 6.8 117 229-348 3-138 (159)
270 KOG2739 Leucine-rich acidic nu 95.5 0.0074 1.6E-07 60.7 2.0 60 637-697 63-127 (260)
271 PRK11034 clpA ATP-dependent Cl 95.5 0.037 8E-07 66.7 8.3 119 202-333 459-582 (758)
272 PF05659 RPW8: Arabidopsis bro 95.5 0.17 3.7E-06 47.4 10.8 80 3-86 5-85 (147)
273 PRK07667 uridine kinase; Provi 95.4 0.018 3.9E-07 57.6 4.7 38 210-251 3-40 (193)
274 PLN03186 DNA repair protein RA 95.4 0.074 1.6E-06 57.8 9.7 58 227-285 122-183 (342)
275 PRK09270 nucleoside triphospha 95.4 0.049 1.1E-06 56.2 8.1 26 226-251 31-56 (229)
276 KOG0744 AAA+-type ATPase [Post 95.4 0.041 8.8E-07 56.9 7.1 79 228-317 177-259 (423)
277 PRK13695 putative NTPase; Prov 95.4 0.012 2.6E-07 57.9 3.1 22 230-251 2-23 (174)
278 COG1484 DnaC DNA replication p 95.4 0.049 1.1E-06 56.8 7.8 82 227-326 104-185 (254)
279 COG1419 FlhF Flagellar GTP-bin 95.4 0.046 1E-06 59.2 7.7 87 227-317 202-290 (407)
280 PF06309 Torsin: Torsin; Inte 95.4 0.051 1.1E-06 48.8 6.7 50 202-251 26-76 (127)
281 KOG2123 Uncharacterized conser 95.4 0.0017 3.6E-08 65.2 -2.9 103 614-720 18-127 (388)
282 COG2884 FtsE Predicted ATPase 95.4 0.091 2E-06 50.3 8.6 61 295-355 142-204 (223)
283 KOG1644 U2-associated snRNP A' 95.3 0.02 4.4E-07 55.1 4.4 92 791-886 57-150 (233)
284 TIGR00959 ffh signal recogniti 95.3 0.08 1.7E-06 59.3 9.8 25 227-251 98-122 (428)
285 KOG2739 Leucine-rich acidic nu 95.2 0.0086 1.9E-07 60.2 1.6 85 611-696 61-153 (260)
286 PRK00625 shikimate kinase; Pro 95.2 0.11 2.4E-06 50.6 9.3 21 230-250 2-22 (173)
287 PRK10867 signal recognition pa 95.2 0.1 2.3E-06 58.4 10.2 25 226-250 98-122 (433)
288 KOG0730 AAA+-type ATPase [Post 95.2 0.22 4.8E-06 56.8 12.5 50 201-250 434-490 (693)
289 PF00154 RecA: recA bacterial 95.2 0.048 1E-06 58.2 7.1 86 226-318 51-141 (322)
290 PRK13531 regulatory ATPase Rav 95.2 0.023 4.9E-07 63.6 4.9 42 202-251 21-62 (498)
291 KOG0731 AAA+-type ATPase conta 95.2 0.2 4.4E-06 58.9 12.7 181 201-407 311-520 (774)
292 PRK05439 pantothenate kinase; 95.2 0.099 2.2E-06 55.7 9.5 95 210-309 70-166 (311)
293 KOG2035 Replication factor C, 95.1 0.052 1.1E-06 54.9 6.6 208 203-433 15-260 (351)
294 PRK06835 DNA replication prote 95.1 0.061 1.3E-06 58.2 7.9 36 229-266 184-219 (329)
295 COG0563 Adk Adenylate kinase a 95.1 0.029 6.3E-07 54.8 4.9 22 230-251 2-23 (178)
296 PTZ00301 uridine kinase; Provi 95.1 0.027 5.7E-07 56.8 4.6 23 228-250 3-25 (210)
297 COG4608 AppF ABC-type oligopep 95.0 0.085 1.8E-06 54.0 8.0 126 227-355 38-177 (268)
298 KOG0734 AAA+-type ATPase conta 95.0 0.051 1.1E-06 59.9 6.8 53 200-252 303-361 (752)
299 PF13604 AAA_30: AAA domain; P 95.0 0.018 4E-07 57.6 3.3 106 229-347 19-130 (196)
300 PRK14722 flhF flagellar biosyn 95.0 0.075 1.6E-06 58.1 8.1 89 227-318 136-225 (374)
301 TIGR03877 thermo_KaiC_1 KaiC d 95.0 0.1 2.3E-06 54.0 9.0 48 227-278 20-67 (237)
302 PRK06067 flagellar accessory p 95.0 0.071 1.5E-06 55.3 7.7 88 226-318 23-130 (234)
303 KOG1969 DNA replication checkp 95.0 0.064 1.4E-06 61.5 7.6 76 225-321 323-400 (877)
304 PTZ00035 Rad51 protein; Provis 95.0 0.17 3.6E-06 55.2 10.7 59 226-285 116-178 (337)
305 PF08298 AAA_PrkA: PrkA AAA do 95.0 0.03 6.5E-07 59.6 4.8 51 200-250 60-110 (358)
306 PRK00771 signal recognition pa 95.0 0.12 2.7E-06 58.0 9.9 88 226-317 93-184 (437)
307 cd01131 PilT Pilus retraction 94.9 0.023 4.9E-07 57.1 3.7 110 229-351 2-112 (198)
308 PRK12724 flagellar biosynthesi 94.9 0.073 1.6E-06 58.6 7.8 25 227-251 222-246 (432)
309 cd03214 ABC_Iron-Siderophores_ 94.9 0.15 3.2E-06 50.4 9.4 120 228-351 25-161 (180)
310 cd01121 Sms Sms (bacterial rad 94.9 0.15 3.3E-06 56.2 10.4 83 227-317 81-167 (372)
311 cd03115 SRP The signal recogni 94.9 0.1 2.3E-06 51.1 8.2 22 230-251 2-23 (173)
312 PRK12727 flagellar biosynthesi 94.9 0.11 2.4E-06 58.8 9.1 89 227-318 349-438 (559)
313 PF00485 PRK: Phosphoribulokin 94.9 0.02 4.3E-07 57.4 3.1 81 230-312 1-87 (194)
314 TIGR00390 hslU ATP-dependent p 94.9 0.064 1.4E-06 58.8 7.1 81 201-283 12-104 (441)
315 PF01583 APS_kinase: Adenylyls 94.9 0.035 7.5E-07 52.5 4.4 35 228-264 2-36 (156)
316 KOG1947 Leucine rich repeat pr 94.8 0.0044 9.5E-08 72.4 -2.1 61 637-697 186-254 (482)
317 cd02019 NK Nucleoside/nucleoti 94.8 0.019 4.1E-07 46.3 2.2 22 230-251 1-22 (69)
318 TIGR01817 nifA Nif-specific re 94.8 0.16 3.4E-06 59.8 10.9 48 200-251 195-242 (534)
319 PRK05703 flhF flagellar biosyn 94.8 0.11 2.3E-06 58.6 8.9 87 228-317 221-308 (424)
320 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.8 0.13 2.8E-06 48.6 8.3 24 228-251 26-49 (144)
321 PRK11608 pspF phage shock prot 94.8 0.036 7.8E-07 60.4 5.1 45 202-250 7-51 (326)
322 cd02025 PanK Pantothenate kina 94.8 0.091 2E-06 53.6 7.7 21 230-250 1-21 (220)
323 cd03238 ABC_UvrA The excision 94.8 0.1 2.2E-06 51.0 7.7 115 228-352 21-153 (176)
324 TIGR02974 phageshock_pspF psp 94.8 0.071 1.5E-06 58.1 7.3 45 203-251 1-45 (329)
325 PRK15429 formate hydrogenlyase 94.8 0.053 1.1E-06 65.9 6.9 47 201-251 376-422 (686)
326 PRK05480 uridine/cytidine kina 94.8 0.027 5.9E-07 57.2 3.8 26 226-251 4-29 (209)
327 PF13238 AAA_18: AAA domain; P 94.7 0.019 4.2E-07 53.0 2.5 21 231-251 1-21 (129)
328 TIGR00235 udk uridine kinase. 94.7 0.026 5.7E-07 57.2 3.6 26 226-251 4-29 (207)
329 KOG1051 Chaperone HSP104 and r 94.7 0.13 2.9E-06 61.8 9.8 115 201-328 562-680 (898)
330 cd03222 ABC_RNaseL_inhibitor T 94.7 0.12 2.6E-06 50.6 7.9 24 228-251 25-48 (177)
331 TIGR00064 ftsY signal recognit 94.7 0.17 3.6E-06 53.5 9.6 90 226-318 70-164 (272)
332 TIGR00554 panK_bact pantothena 94.7 0.13 2.9E-06 54.4 8.8 80 226-308 60-141 (290)
333 PLN00020 ribulose bisphosphate 94.7 0.06 1.3E-06 57.7 6.1 26 226-251 146-171 (413)
334 PF03308 ArgK: ArgK protein; 94.7 0.051 1.1E-06 55.2 5.3 63 209-275 14-76 (266)
335 COG1223 Predicted ATPase (AAA+ 94.6 0.035 7.7E-07 55.4 4.0 52 201-252 121-175 (368)
336 cd02028 UMPK_like Uridine mono 94.6 0.055 1.2E-06 53.3 5.4 22 230-251 1-22 (179)
337 PF13671 AAA_33: AAA domain; P 94.6 0.027 5.8E-07 53.2 3.1 21 230-250 1-21 (143)
338 PF00006 ATP-synt_ab: ATP synt 94.6 0.087 1.9E-06 53.1 6.8 83 229-317 16-114 (215)
339 COG1136 SalX ABC-type antimicr 94.6 0.18 3.9E-06 50.8 8.9 61 295-355 147-210 (226)
340 PRK06547 hypothetical protein; 94.5 0.045 9.8E-07 53.3 4.6 26 226-251 13-38 (172)
341 PRK12726 flagellar biosynthesi 94.5 0.17 3.6E-06 54.9 9.1 89 227-318 205-295 (407)
342 PF08433 KTI12: Chromatin asso 94.4 0.087 1.9E-06 55.3 6.7 23 229-251 2-24 (270)
343 PRK09519 recA DNA recombinatio 94.4 0.14 3E-06 61.2 9.0 86 226-318 58-148 (790)
344 TIGR00150 HI0065_YjeE ATPase, 94.4 0.055 1.2E-06 49.7 4.5 41 208-252 6-46 (133)
345 cd03247 ABCC_cytochrome_bd The 94.4 0.15 3.2E-06 50.3 8.0 24 228-251 28-51 (178)
346 COG1102 Cmk Cytidylate kinase 94.4 0.049 1.1E-06 50.6 4.1 44 230-286 2-45 (179)
347 PRK12723 flagellar biosynthesi 94.4 0.15 3.2E-06 56.4 8.6 88 227-318 173-264 (388)
348 COG1703 ArgK Putative periplas 94.3 0.059 1.3E-06 55.5 5.0 64 211-278 38-101 (323)
349 KOG0729 26S proteasome regulat 94.3 0.24 5.2E-06 49.7 8.9 95 201-317 177-279 (435)
350 PF12775 AAA_7: P-loop contain 94.3 0.051 1.1E-06 57.3 4.6 34 211-251 23-56 (272)
351 PRK06762 hypothetical protein; 94.3 0.033 7.2E-07 54.2 3.0 23 229-251 3-25 (166)
352 cd03216 ABC_Carb_Monos_I This 94.2 0.12 2.6E-06 50.0 6.9 116 228-351 26-145 (163)
353 PRK05342 clpX ATP-dependent pr 94.2 0.097 2.1E-06 58.5 6.8 50 201-250 71-130 (412)
354 COG1428 Deoxynucleoside kinase 94.2 0.033 7.2E-07 54.5 2.7 25 228-252 4-28 (216)
355 PRK14974 cell division protein 94.2 0.21 4.5E-06 54.1 9.1 90 227-319 139-233 (336)
356 COG0464 SpoVK ATPases of the A 94.1 0.48 1E-05 55.3 12.8 158 201-379 242-424 (494)
357 TIGR01360 aden_kin_iso1 adenyl 94.1 0.04 8.7E-07 54.9 3.3 24 227-250 2-25 (188)
358 PRK05201 hslU ATP-dependent pr 94.1 0.13 2.7E-06 56.6 7.1 81 201-283 15-107 (443)
359 PTZ00088 adenylate kinase 1; P 94.1 0.052 1.1E-06 55.5 4.0 21 231-251 9-29 (229)
360 cd03223 ABCD_peroxisomal_ALDP 94.0 0.26 5.7E-06 47.8 8.8 121 228-352 27-152 (166)
361 cd01122 GP4d_helicase GP4d_hel 94.0 0.3 6.5E-06 51.9 10.0 54 227-283 29-82 (271)
362 PRK07132 DNA polymerase III su 94.0 1.9 4.2E-05 46.0 15.8 157 228-411 18-185 (299)
363 PF07726 AAA_3: ATPase family 94.0 0.032 6.9E-07 50.3 2.0 27 231-259 2-28 (131)
364 cd03281 ABC_MSH5_euk MutS5 hom 94.0 0.048 1E-06 55.3 3.6 23 228-250 29-51 (213)
365 KOG1947 Leucine rich repeat pr 94.0 0.0098 2.1E-07 69.4 -1.7 157 796-962 186-364 (482)
366 PF00910 RNA_helicase: RNA hel 94.0 0.029 6.4E-07 49.9 1.8 21 231-251 1-21 (107)
367 PRK03839 putative kinase; Prov 93.9 0.038 8.3E-07 54.6 2.7 22 230-251 2-23 (180)
368 PF00560 LRR_1: Leucine Rich R 93.9 0.033 7.2E-07 33.2 1.4 22 616-638 1-22 (22)
369 TIGR03878 thermo_KaiC_2 KaiC d 93.9 0.18 3.8E-06 53.0 7.8 40 227-268 35-74 (259)
370 PRK04328 hypothetical protein; 93.9 0.18 3.9E-06 52.6 7.8 41 227-269 22-62 (249)
371 PRK05022 anaerobic nitric oxid 93.9 0.13 2.7E-06 60.1 7.3 63 201-269 187-249 (509)
372 TIGR02858 spore_III_AA stage I 93.8 0.22 4.7E-06 52.3 8.2 126 209-352 97-233 (270)
373 cd02027 APSK Adenosine 5'-phos 93.8 0.14 3.1E-06 48.6 6.3 22 230-251 1-22 (149)
374 PRK08972 fliI flagellum-specif 93.8 0.22 4.8E-06 55.3 8.6 87 227-317 161-261 (444)
375 KOG0733 Nuclear AAA ATPase (VC 93.8 0.49 1.1E-05 53.5 11.0 154 228-404 545-717 (802)
376 PRK04040 adenylate kinase; Pro 93.7 0.047 1E-06 54.1 3.0 23 228-250 2-24 (188)
377 TIGR03881 KaiC_arch_4 KaiC dom 93.7 0.33 7.2E-06 50.1 9.5 41 227-269 19-59 (229)
378 cd01135 V_A-ATPase_B V/A-type 93.7 0.22 4.7E-06 51.8 7.8 90 228-317 69-175 (276)
379 PRK10751 molybdopterin-guanine 93.7 0.066 1.4E-06 51.7 3.8 25 227-251 5-29 (173)
380 PRK06731 flhF flagellar biosyn 93.7 0.27 5.8E-06 51.5 8.5 90 227-319 74-165 (270)
381 PTZ00185 ATPase alpha subunit; 93.7 0.31 6.7E-06 54.7 9.3 89 228-318 189-299 (574)
382 PRK14721 flhF flagellar biosyn 93.7 0.32 6.9E-06 54.2 9.5 24 227-250 190-213 (420)
383 PRK11823 DNA repair protein Ra 93.7 0.31 6.6E-06 55.5 9.6 83 227-317 79-165 (446)
384 KOG0473 Leucine-rich repeat pr 93.6 0.0027 5.9E-08 62.0 -5.7 86 611-698 38-123 (326)
385 PF01078 Mg_chelatase: Magnesi 93.6 0.11 2.4E-06 51.3 5.2 42 201-250 3-44 (206)
386 KOG0924 mRNA splicing factor A 93.6 0.27 5.8E-06 55.8 8.6 117 228-350 371-512 (1042)
387 PRK10820 DNA-binding transcrip 93.6 0.12 2.6E-06 60.2 6.4 46 201-250 204-249 (520)
388 PRK06002 fliI flagellum-specif 93.6 0.17 3.6E-06 56.6 7.1 86 227-317 164-263 (450)
389 PRK15453 phosphoribulokinase; 93.6 0.29 6.3E-06 50.9 8.3 79 226-307 3-89 (290)
390 COG1066 Sms Predicted ATP-depe 93.5 0.51 1.1E-05 51.1 10.3 97 210-319 79-179 (456)
391 COG1875 NYN ribonuclease and A 93.5 0.35 7.7E-06 51.2 8.9 131 205-347 228-387 (436)
392 cd02023 UMPK Uridine monophosp 93.5 0.042 9.1E-07 55.3 2.2 21 230-250 1-21 (198)
393 COG1121 ZnuC ABC-type Mn/Zn tr 93.5 0.14 3.1E-06 52.3 6.0 122 228-351 30-202 (254)
394 KOG3347 Predicted nucleotide k 93.5 0.083 1.8E-06 48.2 3.7 72 228-310 7-78 (176)
395 TIGR02322 phosphon_PhnN phosph 93.5 0.058 1.2E-06 53.3 3.1 23 229-251 2-24 (179)
396 TIGR00708 cobA cob(I)alamin ad 93.4 0.3 6.5E-06 47.0 7.7 119 228-348 5-140 (173)
397 PRK14723 flhF flagellar biosyn 93.4 0.33 7.1E-06 57.9 9.6 86 228-317 185-272 (767)
398 TIGR00416 sms DNA repair prote 93.4 0.42 9E-06 54.5 10.2 96 210-317 80-179 (454)
399 cd03246 ABCC_Protease_Secretio 93.4 0.19 4.2E-06 49.2 6.6 24 228-251 28-51 (173)
400 PRK09280 F0F1 ATP synthase sub 93.4 0.3 6.5E-06 54.8 8.7 89 228-317 144-247 (463)
401 TIGR01425 SRP54_euk signal rec 93.3 0.39 8.4E-06 53.6 9.4 25 226-250 98-122 (429)
402 PRK00889 adenylylsulfate kinas 93.3 0.078 1.7E-06 52.1 3.7 25 227-251 3-27 (175)
403 KOG0728 26S proteasome regulat 93.3 2.2 4.7E-05 42.7 13.3 189 202-413 147-365 (404)
404 cd03228 ABCC_MRP_Like The MRP 93.3 0.24 5.2E-06 48.4 7.2 24 228-251 28-51 (171)
405 PRK00131 aroK shikimate kinase 93.2 0.062 1.3E-06 52.8 2.8 24 228-251 4-27 (175)
406 KOG3864 Uncharacterized conser 93.2 0.0089 1.9E-07 57.6 -3.0 61 875-939 124-187 (221)
407 PF13504 LRR_7: Leucine rich r 93.2 0.057 1.2E-06 29.8 1.4 16 640-655 2-17 (17)
408 PF12061 DUF3542: Protein of u 93.2 0.19 4E-06 51.7 6.1 54 34-87 319-373 (402)
409 TIGR01359 UMP_CMP_kin_fam UMP- 93.2 0.056 1.2E-06 53.6 2.5 22 230-251 1-22 (183)
410 KOG2170 ATPase of the AAA+ sup 93.2 0.17 3.7E-06 52.1 5.8 52 201-252 82-134 (344)
411 PRK08149 ATP synthase SpaL; Va 93.2 0.25 5.5E-06 55.0 7.7 87 227-317 150-250 (428)
412 PRK13765 ATP-dependent proteas 93.2 0.13 2.7E-06 60.7 5.7 75 201-285 31-105 (637)
413 cd02024 NRK1 Nicotinamide ribo 93.1 0.053 1.2E-06 53.4 2.2 22 230-251 1-22 (187)
414 PRK12597 F0F1 ATP synthase sub 93.1 0.21 4.4E-06 56.3 7.0 90 227-317 142-246 (461)
415 PF03193 DUF258: Protein of un 93.1 0.13 2.8E-06 48.9 4.6 34 209-251 25-58 (161)
416 PTZ00494 tuzin-like protein; P 93.1 0.9 2E-05 49.7 11.2 167 199-377 369-543 (664)
417 cd02029 PRK_like Phosphoribulo 93.1 0.25 5.4E-06 50.9 6.9 77 230-308 1-84 (277)
418 cd01132 F1_ATPase_alpha F1 ATP 93.0 0.42 9.1E-06 49.7 8.6 84 228-317 69-170 (274)
419 TIGR03263 guanyl_kin guanylate 93.0 0.074 1.6E-06 52.6 3.0 23 229-251 2-24 (180)
420 cd02021 GntK Gluconate kinase 92.9 0.064 1.4E-06 51.2 2.4 22 230-251 1-22 (150)
421 PRK07594 type III secretion sy 92.9 0.47 1E-05 53.1 9.3 87 227-317 154-254 (433)
422 PRK08533 flagellar accessory p 92.9 0.43 9.4E-06 49.1 8.6 49 227-279 23-71 (230)
423 PF03205 MobB: Molybdopterin g 92.9 0.076 1.7E-06 49.7 2.7 39 229-268 1-39 (140)
424 PRK06995 flhF flagellar biosyn 92.9 0.39 8.3E-06 54.5 8.7 87 227-317 255-343 (484)
425 PRK06217 hypothetical protein; 92.8 0.068 1.5E-06 53.0 2.5 22 230-251 3-24 (183)
426 PRK08927 fliI flagellum-specif 92.8 0.46 1E-05 53.1 9.1 87 227-317 157-257 (442)
427 TIGR00764 lon_rel lon-related 92.8 0.2 4.4E-06 59.2 6.7 74 201-285 18-92 (608)
428 cd00227 CPT Chloramphenicol (C 92.8 0.08 1.7E-06 52.0 2.9 23 229-251 3-25 (175)
429 COG0467 RAD55 RecA-superfamily 92.8 0.13 2.9E-06 54.2 4.7 42 226-269 21-62 (260)
430 TIGR03575 selen_PSTK_euk L-ser 92.8 0.25 5.4E-06 53.4 6.8 21 231-251 2-22 (340)
431 PRK05986 cob(I)alamin adenolsy 92.7 0.29 6.4E-06 47.8 6.6 120 227-348 21-158 (191)
432 COG1936 Predicted nucleotide k 92.7 0.081 1.8E-06 50.0 2.6 20 230-249 2-21 (180)
433 PF00625 Guanylate_kin: Guanyl 92.7 0.11 2.4E-06 51.4 3.8 38 228-267 2-39 (183)
434 KOG0727 26S proteasome regulat 92.7 0.34 7.4E-06 48.2 6.9 52 200-251 154-212 (408)
435 cd00820 PEPCK_HprK Phosphoenol 92.6 0.11 2.3E-06 45.7 3.0 22 228-249 15-36 (107)
436 PF08477 Miro: Miro-like prote 92.6 0.086 1.9E-06 47.9 2.7 22 231-252 2-23 (119)
437 TIGR02655 circ_KaiC circadian 92.6 0.57 1.2E-05 54.2 10.0 66 210-284 249-314 (484)
438 PRK03846 adenylylsulfate kinas 92.6 0.11 2.4E-06 52.1 3.7 25 226-250 22-46 (198)
439 PLN02348 phosphoribulokinase 92.6 0.33 7.2E-06 53.0 7.4 26 226-251 47-72 (395)
440 COG0529 CysC Adenylylsulfate k 92.5 0.11 2.4E-06 49.1 3.2 24 227-250 22-45 (197)
441 KOG3864 Uncharacterized conser 92.5 0.015 3.3E-07 56.1 -2.5 86 824-918 102-188 (221)
442 PRK10078 ribose 1,5-bisphospho 92.5 0.095 2.1E-06 52.1 3.1 23 229-251 3-25 (186)
443 PF13245 AAA_19: Part of AAA d 92.5 0.17 3.8E-06 41.5 4.0 22 229-250 11-33 (76)
444 COG1124 DppF ABC-type dipeptid 92.5 0.096 2.1E-06 52.4 3.0 24 227-250 32-55 (252)
445 PRK13949 shikimate kinase; Pro 92.5 0.083 1.8E-06 51.4 2.5 22 230-251 3-24 (169)
446 PRK13947 shikimate kinase; Pro 92.5 0.082 1.8E-06 51.7 2.5 21 230-250 3-23 (171)
447 COG0714 MoxR-like ATPases [Gen 92.5 0.26 5.7E-06 54.0 6.7 65 202-279 25-89 (329)
448 cd00544 CobU Adenosylcobinamid 92.4 0.32 7E-06 47.1 6.5 79 231-317 2-82 (169)
449 PRK14737 gmk guanylate kinase; 92.4 0.12 2.7E-06 51.1 3.6 25 227-251 3-27 (186)
450 COG2019 AdkA Archaeal adenylat 92.4 0.11 2.4E-06 48.5 3.0 23 228-250 4-26 (189)
451 PF03266 NTPase_1: NTPase; In 92.4 0.085 1.8E-06 51.1 2.4 21 231-251 2-22 (168)
452 COG0003 ArsA Predicted ATPase 92.4 0.21 4.5E-06 53.6 5.5 49 228-278 2-50 (322)
453 PRK06936 type III secretion sy 92.4 0.32 7E-06 54.2 7.2 85 227-317 161-261 (439)
454 PF13481 AAA_25: AAA domain; P 92.4 0.24 5.1E-06 49.6 5.8 41 229-269 33-81 (193)
455 PRK00300 gmk guanylate kinase; 92.4 0.1 2.2E-06 52.9 3.1 25 227-251 4-28 (205)
456 cd02020 CMPK Cytidine monophos 92.3 0.089 1.9E-06 49.9 2.5 21 230-250 1-21 (147)
457 KOG1532 GTPase XAB1, interacts 92.3 0.1 2.2E-06 52.6 2.9 90 226-316 17-123 (366)
458 COG4240 Predicted kinase [Gene 92.3 0.46 9.9E-06 46.8 7.1 84 226-310 48-135 (300)
459 cd04159 Arl10_like Arl10-like 92.3 0.55 1.2E-05 44.8 8.1 21 231-251 2-22 (159)
460 TIGR03498 FliI_clade3 flagella 92.3 0.55 1.2E-05 52.4 8.9 87 227-317 139-239 (418)
461 cd00071 GMPK Guanosine monopho 92.2 0.096 2.1E-06 49.0 2.5 21 231-251 2-22 (137)
462 KOG0736 Peroxisome assembly fa 92.2 0.76 1.7E-05 53.5 9.9 98 201-319 672-775 (953)
463 PRK10733 hflB ATP-dependent me 92.2 0.39 8.5E-06 57.5 8.2 157 201-378 152-335 (644)
464 cd03282 ABC_MSH4_euk MutS4 hom 92.2 0.16 3.5E-06 51.0 4.2 119 228-355 29-158 (204)
465 PRK14530 adenylate kinase; Pro 92.1 0.095 2.1E-06 53.5 2.6 22 230-251 5-26 (215)
466 COG1126 GlnQ ABC-type polar am 92.1 0.16 3.6E-06 49.8 4.0 36 227-265 27-62 (240)
467 PRK10875 recD exonuclease V su 92.1 0.5 1.1E-05 55.7 8.8 116 229-347 168-301 (615)
468 cd01134 V_A-ATPase_A V/A-type 92.0 0.88 1.9E-05 48.9 9.6 48 228-279 157-205 (369)
469 PRK12339 2-phosphoglycerate ki 92.0 0.13 2.7E-06 51.4 3.2 24 228-251 3-26 (197)
470 PRK05917 DNA polymerase III su 92.0 2.2 4.8E-05 45.1 12.5 41 307-347 94-134 (290)
471 COG3640 CooC CO dehydrogenase 91.9 0.25 5.4E-06 49.2 5.0 41 230-272 2-43 (255)
472 PF06745 KaiC: KaiC; InterPro 91.9 0.15 3.2E-06 52.6 3.7 42 227-269 18-59 (226)
473 PRK11388 DNA-binding transcrip 91.9 0.3 6.4E-06 59.0 6.9 47 201-251 325-371 (638)
474 cd01136 ATPase_flagellum-secre 91.9 0.96 2.1E-05 48.7 9.9 84 228-317 69-168 (326)
475 PRK05057 aroK shikimate kinase 91.9 0.12 2.5E-06 50.6 2.7 23 229-251 5-27 (172)
476 TIGR01313 therm_gnt_kin carboh 91.8 0.095 2.1E-06 50.8 2.1 21 231-251 1-21 (163)
477 PRK13948 shikimate kinase; Pro 91.8 0.13 2.8E-06 50.6 2.9 24 227-250 9-32 (182)
478 TIGR03305 alt_F1F0_F1_bet alte 91.8 0.34 7.5E-06 54.2 6.6 90 227-317 137-241 (449)
479 PRK12678 transcription termina 91.8 0.43 9.4E-06 54.2 7.3 100 212-317 405-512 (672)
480 cd00464 SK Shikimate kinase (S 91.8 0.12 2.6E-06 49.4 2.8 20 231-250 2-21 (154)
481 PRK14738 gmk guanylate kinase; 91.8 0.16 3.4E-06 51.4 3.6 25 226-250 11-35 (206)
482 TIGR02030 BchI-ChlI magnesium 91.8 0.21 4.6E-06 54.2 4.8 44 201-250 4-47 (337)
483 PRK06793 fliI flagellum-specif 91.8 0.73 1.6E-05 51.5 9.1 88 227-318 155-256 (432)
484 PRK05800 cobU adenosylcobinami 91.8 0.39 8.5E-06 46.7 6.2 81 230-317 3-85 (170)
485 TIGR01069 mutS2 MutS2 family p 91.7 0.069 1.5E-06 64.8 1.2 188 227-429 321-518 (771)
486 PRK06761 hypothetical protein; 91.7 0.24 5.1E-06 52.1 4.9 23 229-251 4-26 (282)
487 TIGR00073 hypB hydrogenase acc 91.7 0.14 3E-06 51.9 3.2 26 226-251 20-45 (207)
488 cd03243 ABC_MutS_homologs The 91.7 0.1 2.2E-06 52.7 2.1 22 229-250 30-51 (202)
489 PRK13975 thymidylate kinase; P 91.6 0.13 2.8E-06 51.6 2.9 23 229-251 3-25 (196)
490 PRK09099 type III secretion sy 91.6 0.69 1.5E-05 51.9 8.8 87 227-317 162-262 (441)
491 cd02034 CooC The accessory pro 91.6 0.65 1.4E-05 41.8 7.0 21 231-251 2-22 (116)
492 PLN02318 phosphoribulokinase/u 91.6 0.22 4.7E-06 57.1 4.8 25 226-250 63-87 (656)
493 PRK14527 adenylate kinase; Pro 91.6 0.15 3.2E-06 50.9 3.2 25 227-251 5-29 (191)
494 COG4639 Predicted kinase [Gene 91.6 0.16 3.4E-06 47.0 3.0 23 228-250 2-24 (168)
495 PF03969 AFG1_ATPase: AFG1-lik 91.6 0.13 2.7E-06 56.6 2.8 77 227-322 61-141 (362)
496 CHL00081 chlI Mg-protoporyphyr 91.6 0.18 4E-06 54.7 4.1 46 199-250 15-60 (350)
497 PRK08472 fliI flagellum-specif 91.6 0.67 1.4E-05 51.8 8.5 40 227-270 156-195 (434)
498 cd00984 DnaB_C DnaB helicase C 91.6 0.9 2E-05 47.3 9.3 53 227-282 12-64 (242)
499 TIGR02329 propionate_PrpR prop 91.5 0.25 5.5E-06 57.2 5.4 47 201-251 212-258 (526)
500 COG4181 Predicted ABC-type tra 91.5 1.1 2.4E-05 42.4 8.4 84 271-355 122-214 (228)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=5.5e-90 Score=815.04 Aligned_cols=820 Identities=28% Similarity=0.409 Sum_probs=581.7
Q ss_pred chHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHhhcccCChHHHHHHHHHHHHHhhhhhhhhhhhhhHHHhhhcCCCCc
Q 038637 22 PEGVELLTRHEKLKADFIKWKGMLEMIRAVLADAEDRRTKEKSVKMWLDNLQNLAYDLEDILDEFQTESLRRELLPQEPA 101 (962)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~~~~~~~~~~wl~~lr~~ayd~eD~lD~~~~~~~~~~~~~~~~~ 101 (962)
+.+.+++....++++.+..|+++|..+++++.||++++.....+..|.+.+++++|++||.++.|.......+..+ .
T Consensus 14 ~~l~~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~-~-- 90 (889)
T KOG4658|consen 14 QLLNRESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKAND-L-- 90 (889)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-H--
Confidence 3334556666678889999999999999999999999888888999999999999999999999998876543322 0
Q ss_pred cccccccccccccccccchhhccchhhhhhhhhccCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHhhhhccCcccccc
Q 038637 102 AVDQSSASTSTFWKFTDSLKRKVTDAVTLSKIRKLSTSDSPRSSFNFESKMVSQIEEVTARLQDIISTQKVLLKLKNVIS 181 (962)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~l~~i~~~~~~~~~~~~~~~ 181 (962)
..........+.. ..+.+..+..+..+.+++..+ ....+.++......
T Consensus 91 -----l~~~~~~~~~~c~--------------------------~~~~~~~~~~~~~~~~rv~~~-l~~ve~l~~~~~~~ 138 (889)
T KOG4658|consen 91 -----LSTRSVERQRLCL--------------------------CGFCSKNVSDSYKYGKRVSKV-LREVESLGSKGVFE 138 (889)
T ss_pred -----hhhhHHHHHHHhh--------------------------hhhHhHhhhhhHhHHHHHHHH-HHHHHHhcccccee
Confidence 0000000000000 123445555555555555555 33344444333221
Q ss_pred cccc-cccccCCCccccccCCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccc-hhcccc
Q 038637 182 DVKS-RNVRQIPPTTSLVNEAEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDR-VQRHFQ 259 (962)
Q Consensus 182 ~~~~-~~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~-~~~~F~ 259 (962)
.+.. .......++.+...+.. ||.+..++++++.|.+.. ..+++|+||||+||||||+.++|+.. ++.+|+
T Consensus 139 ~~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L~~d~------~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd 211 (889)
T KOG4658|consen 139 VVGESLDPREKVETRPIQSESD-VGLETMLEKLWNRLMEDD------VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFD 211 (889)
T ss_pred cccccccchhhcccCCCCcccc-ccHHHHHHHHHHHhccCC------CCEEEEECCCcccHHHHHHHHhcccchhcccCc
Confidence 1110 11122233445555555 999999999999997654 38999999999999999999999987 999999
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHhccCCCC-CCccHHHHHHHHHhHhCCceEEEEEecCCCCCccchhhccCCCCCCCCC
Q 038637 260 FKAWACVSEDFDVFRVTKSILKSIANDQSN-NDDDLNLLQEKLKKQLSGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPG 338 (962)
Q Consensus 260 ~~~wv~v~~~~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 338 (962)
.++||+||+.|+...++.+|++.++..... .....++++..|.+.|++|||+|||||||++ .+|+.+..++|....|
T Consensus 212 ~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g 289 (889)
T KOG4658|consen 212 GVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENG 289 (889)
T ss_pred eEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCC
Confidence 999999999999999999999999875442 2233478999999999999999999999997 5699999999999899
Q ss_pred cEEEEEecChhhHhh-hCCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHHHHHHhhhcC
Q 038637 339 SKIVVTTRNLDVANL-TRAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAAKTLGGLLRG 417 (962)
Q Consensus 339 s~ilvTtR~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~~L~~ 417 (962)
|+|++|||+++|+.. +++...+++.+|+++|||+||++.||.... ..++.++++|++++++|+|+|||++++|+.|+.
T Consensus 290 ~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~-~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~ 368 (889)
T KOG4658|consen 290 SKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTL-GSHPDIEELAKEVAEKCGGLPLALNVLGGLLAC 368 (889)
T ss_pred eEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccc-cccccHHHHHHHHHHHhCChHHHHHHHHHHhcC
Confidence 999999999999998 778889999999999999999999987533 344559999999999999999999999999999
Q ss_pred CCChhHHHHHHhhhhhcccc----cccCchhHHHhhccCCchhhHhHHhhhcCCCCCceeCHHHHHHHHHHcCCcccccC
Q 038637 418 KDDLTDWEFVLNTDIWKLQE----ENYGIIPALRVSYHFLPSQLKQCFAYCSLFPKDYEFQEEEIILLWTAEGFLDQEYN 493 (962)
Q Consensus 418 ~~~~~~w~~~~~~~~~~~~~----~~~~i~~~l~~sy~~L~~~~k~cfl~~~~fp~~~~i~~~~li~~W~aeg~i~~~~~ 493 (962)
|.+..+|+++.+...+.... ..+.+.++|++||+.||+++|.||+|||+||+||.|+++.||.+|+|||||.+..+
T Consensus 369 K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~ 448 (889)
T KOG4658|consen 369 KKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDG 448 (889)
T ss_pred CCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCcccc
Confidence 99999999999987665322 24679999999999999999999999999999999999999999999999998777
Q ss_pred CCcHHHHHHHHHHHHhhCCCcccccC--CCCcEEEcchhhHHHHHhhc-----cceeecccc--cccccccccCCceeEE
Q 038637 494 GRKMEDLGREFVRELHSRSLFQQSSR--DASRFVMHDLINDLARWAAG-----EIYFRMEDT--LAGENRQQFSQTLRHF 564 (962)
Q Consensus 494 ~~~~e~~~~~~l~~L~~r~ll~~~~~--~~~~~~mHdli~d~a~~~~~-----~~~~~~~~~--~~~~~~~~~~~~~r~l 564 (962)
+.++++.|++|+.+|++++|++.... ....|+|||+|||+|.++|+ +++.++... .........+..+|++
T Consensus 449 ~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~ 528 (889)
T KOG4658|consen 449 GETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRM 528 (889)
T ss_pred ccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEE
Confidence 88999999999999999999998763 35789999999999999999 555544432 1111122244678999
Q ss_pred EEEeeccccccccccccCCCCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCcccccccccCCCcCCeE
Q 038637 565 SYICREYDGKKRLESVCDVEHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFNLPNEIGNLKHLRCL 644 (962)
Q Consensus 565 s~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L 644 (962)
++.++... ....-..+++|+||.+..+.. ....++..+|..++.||||||++|..+..+|++|++|.|||||
T Consensus 529 s~~~~~~~---~~~~~~~~~~L~tLll~~n~~-----~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL 600 (889)
T KOG4658|consen 529 SLMNNKIE---HIAGSSENPKLRTLLLQRNSD-----WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL 600 (889)
T ss_pred EEeccchh---hccCCCCCCccceEEEeecch-----hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence 99887532 223344667899999887642 1245667789999999999999998999999999999999999
Q ss_pred eccCCCCccccccccccccCcEEeeCCCccccccchhcccCCCccEEecCCCCCccccCCCCCCCCCCCccCCeEeCCCC
Q 038637 645 NLSRTRIQILPESINSLYNLHTILLENCWELKKLCKDMGNLTKLRHLRNSDAGLLEEMPKGFGKLTSLLTLGRFVVGKDS 724 (962)
Q Consensus 645 ~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~ 724 (962)
+|+++.++.+|..+.+|..|++|++..+..+..+|..+..|++||+|.+.... .......++.+.+|++|..+.....+
T Consensus 601 ~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~Le~L~~ls~~~~s 679 (889)
T KOG4658|consen 601 DLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA-LSNDKLLLKELENLEHLENLSITISS 679 (889)
T ss_pred cccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc-cccchhhHHhhhcccchhhheeecch
Confidence 99999999999999999999999999998888888877889999999987654 11112234455556666544443222
Q ss_pred CCCcccccCcccCCCeEEEecc-CCCCChhhhhhhcCcCCcCCCceEEeccCCCCCCccchhhHHhhhccCC---CCCCc
Q 038637 725 GSGLRELKSLTHLQGTLRISKL-ENVEDVGDACEAQLNNKVNLRTLLLDWSARDVQNLDQCEFETRVLSMLK---PHRDV 800 (962)
Q Consensus 725 ~~~~~~l~~L~~L~~~L~i~~l-~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~---~~~~L 800 (962)
...+..+..+..|. ++.+.-. .. .........+..+.+|+.|.+..+... +. ......... ..+++
T Consensus 680 ~~~~e~l~~~~~L~-~~~~~l~~~~--~~~~~~~~~~~~l~~L~~L~i~~~~~~-----e~--~~~~~~~~~~~~~f~~l 749 (889)
T KOG4658|consen 680 VLLLEDLLGMTRLR-SLLQSLSIEG--CSKRTLISSLGSLGNLEELSILDCGIS-----EI--VIEWEESLIVLLCFPNL 749 (889)
T ss_pred hHhHhhhhhhHHHH-HHhHhhhhcc--cccceeecccccccCcceEEEEcCCCc-----hh--hcccccccchhhhHHHH
Confidence 21223333333332 1111000 00 111223334444555555555544410 00 000000000 11233
Q ss_pred CeEEEeecCCCCCCcCcCCCCCCCccEEEEeCCCCCC-CCCCCCCCCCcCeEeecCCCCceEeCccccCCCCCCCCCCcc
Q 038637 801 QELTIRGYGGTKFPIWLGDSSFSKLVNLKFGYCRMCT-SLPSVGQLPLLKHLKISGMDRVKSVGLEFYGSSCSVPFPSLE 879 (962)
Q Consensus 801 ~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~-~l~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~ 879 (962)
..+.+.++...+.+.|.. ..++|+.|.+..|...+ .+|....+..++.+. .+|+++.
T Consensus 750 ~~~~~~~~~~~r~l~~~~--f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i--------------------~~f~~~~ 807 (889)
T KOG4658|consen 750 SKVSILNCHMLRDLTWLL--FAPHLTSLSLVSCRLLEDIIPKLKALLELKELI--------------------LPFNKLE 807 (889)
T ss_pred HHHHhhccccccccchhh--ccCcccEEEEecccccccCCCHHHHhhhcccEE--------------------ecccccc
Confidence 333333333334444442 34455555555555442 223222333332211 2255555
Q ss_pred ee-eccccccccccccccCCccccCcCCccceEeEccCCCccccCCCCCCCcceEEEccc
Q 038637 880 TL-SFSDMREWEEWISCGAGQEVDEVFPKLRKLSLFNCYKLQGTLPKRLLLLEKLVIKSC 938 (962)
Q Consensus 880 ~L-~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~lp~~l~~L~~L~i~~c 938 (962)
.+ .+.+.+.+..+.. ..-.+|.|+.+.+..||++. .+| .+.++.|.+|
T Consensus 808 ~l~~~~~l~~l~~i~~------~~l~~~~l~~~~ve~~p~l~-~~P----~~~~~~i~~~ 856 (889)
T KOG4658|consen 808 GLRMLCSLGGLPQLYW------LPLSFLKLEELIVEECPKLG-KLP----LLSTLTIVGC 856 (889)
T ss_pred cceeeecCCCCceeEe------cccCccchhheehhcCcccc-cCc----cccccceecc
Confidence 55 3555555554422 12235667888888888877 444 4666777776
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=5.5e-64 Score=629.57 Aligned_cols=693 Identities=21% Similarity=0.266 Sum_probs=431.7
Q ss_pred ccCCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEe---CCC-----
Q 038637 198 VNEAEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACV---SED----- 269 (962)
Q Consensus 198 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v---~~~----- 269 (962)
.+...+|||+..++++..+|.... +++++|+|+||||+||||||+++|+ ++..+|+..+|+.. +..
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l~~----~~~~vvgI~G~gGiGKTTLA~~l~~--~l~~~F~g~vfv~~~~v~~~~~~~~ 254 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHLES----EEVRMVGIWGSSGIGKTTIARALFS--RLSRQFQSSVFIDRAFISKSMEIYS 254 (1153)
T ss_pred cccccccchHHHHHHHHHHHcccc----CceEEEEEEcCCCCchHHHHHHHHH--HHhhcCCeEEEeeccccccchhhcc
Confidence 345679999999999999885432 4789999999999999999999998 67788998887742 111
Q ss_pred ------CC-HHHHHHHHHHHhccCCCCCCccHHHHHHHHHhHhCCceEEEEEecCCCCCccchhhccCCCCCCCCCcEEE
Q 038637 270 ------FD-VFRVTKSILKSIANDQSNNDDDLNLLQEKLKKQLSGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIV 342 (962)
Q Consensus 270 ------~~-~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~il 342 (962)
++ ...++..++.++.......... ...+++.+++||+||||||||+. ..|+.+.......++||+||
T Consensus 255 ~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~----~~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrII 328 (1153)
T PLN03210 255 SANPDDYNMKLHLQRAFLSEILDKKDIKIYH----LGAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRII 328 (1153)
T ss_pred cccccccchhHHHHHHHHHHHhCCCCcccCC----HHHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEE
Confidence 01 2244555665554432211111 14577788999999999999875 57888877666667899999
Q ss_pred EEecChhhHhhhCCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHHHHHHhhhcCCCChh
Q 038637 343 VTTRNLDVANLTRAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAAKTLGGLLRGKDDLT 422 (962)
Q Consensus 343 vTtR~~~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~~L~~~~~~~ 422 (962)
||||+..++..++..++|+++.|++++||+||+++||+.. .+.+.+.+++++|+++|+|+||||+++|+.|+++ +..
T Consensus 329 iTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~--~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~ 405 (1153)
T PLN03210 329 VITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKN--SPPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKE 405 (1153)
T ss_pred EEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCC--CCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHH
Confidence 9999999998777778999999999999999999999753 3445688999999999999999999999999987 678
Q ss_pred HHHHHHhhhhhcccccccCchhHHHhhccCCch-hhHhHHhhhcCCCCCceeCHHHHHHHHHHcCCcccccCCCcHHHHH
Q 038637 423 DWEFVLNTDIWKLQEENYGIIPALRVSYHFLPS-QLKQCFAYCSLFPKDYEFQEEEIILLWTAEGFLDQEYNGRKMEDLG 501 (962)
Q Consensus 423 ~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~-~~k~cfl~~~~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~~e~~~ 501 (962)
+|+.++.+..... +..|.++|++||+.|++ ..|.||+++|+|+.+..++ .+..|++.+....
T Consensus 406 ~W~~~l~~L~~~~---~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~----------- 468 (1153)
T PLN03210 406 DWMDMLPRLRNGL---DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV----------- 468 (1153)
T ss_pred HHHHHHHHHHhCc---cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc-----------
Confidence 9999998865433 34699999999999987 5999999999999887553 4777888765432
Q ss_pred HHHHHHHhhCCCcccccCCCCcEEEcchhhHHHHHhhccce-------eeccc-cc-ccccccccCCceeEEEEEeeccc
Q 038637 502 REFVRELHSRSLFQQSSRDASRFVMHDLINDLARWAAGEIY-------FRMED-TL-AGENRQQFSQTLRHFSYICREYD 572 (962)
Q Consensus 502 ~~~l~~L~~r~ll~~~~~~~~~~~mHdli~d~a~~~~~~~~-------~~~~~-~~-~~~~~~~~~~~~r~ls~~~~~~~ 572 (962)
+..++.|++++|++... ..+.|||++|++|+.++.++. +.... +. .-.........++++++......
T Consensus 469 ~~~l~~L~~ksLi~~~~---~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~ 545 (1153)
T PLN03210 469 NIGLKNLVDKSLIHVRE---DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEID 545 (1153)
T ss_pred hhChHHHHhcCCEEEcC---CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccc
Confidence 22388999999998753 479999999999999987653 11110 00 00000112345677666543221
Q ss_pred cc-cccccccCCCCeeEEccCCCccccccccccCcchhhhC----------------------CCCcccEEEeCCCcCcc
Q 038637 573 GK-KRLESVCDVEHLRTFLPVNLSDYRRNYLAWSVPHMLLN----------------------HLPRLRVFSLCGYCNIF 629 (962)
Q Consensus 573 ~~-~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~----------------------~l~~Lr~L~L~~~~~~~ 629 (962)
.. .....|.++++|+.|.+.....-..+.....+|..+.. .+.+|+.|+|++| .+.
T Consensus 546 ~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s-~l~ 624 (1153)
T PLN03210 546 ELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGS-KLE 624 (1153)
T ss_pred eeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCc-ccc
Confidence 11 11234667888888866433100000011112222111 2344555555554 344
Q ss_pred cccccccCCCcCCeEeccCCC-CccccccccccccCcEEeeCCCccccccchhcccCCCccEEecCCCCCccccCCCCCC
Q 038637 630 NLPNEIGNLKHLRCLNLSRTR-IQILPESINSLYNLHTILLENCWELKKLCKDMGNLTKLRHLRNSDAGLLEEMPKGFGK 708 (962)
Q Consensus 630 ~lp~~i~~L~~Lr~L~Ls~~~-i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~ 708 (962)
.+|..+..+++|++|+|+++. +..+| .++.+++|++|++++|..+..+|..+.++++|++|++++|..+..+|..+ +
T Consensus 625 ~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~ 702 (1153)
T PLN03210 625 KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-N 702 (1153)
T ss_pred ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-C
Confidence 555555555555555555432 33444 24455555555555555555555555555555555555554455555443 3
Q ss_pred CCCCCccCCeEeCCCCCCCccccc-CcccCCCeEEEeccCCCCChhhhhhhcCcCCcCCCceEEeccCCCCCCccchhhH
Q 038637 709 LTSLLTLGRFVVGKDSGSGLRELK-SLTHLQGTLRISKLENVEDVGDACEAQLNNKVNLRTLLLDWSARDVQNLDQCEFE 787 (962)
Q Consensus 709 l~~L~~L~~~~~~~~~~~~~~~l~-~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 787 (962)
+++|+.|....... +..++ ...+|+ .|.+.... ...++..+ .+++|..|.+..+... .+... ..
T Consensus 703 l~sL~~L~Lsgc~~-----L~~~p~~~~nL~-~L~L~~n~-----i~~lP~~~-~l~~L~~L~l~~~~~~--~l~~~-~~ 767 (1153)
T PLN03210 703 LKSLYRLNLSGCSR-----LKSFPDISTNIS-WLDLDETA-----IEEFPSNL-RLENLDELILCEMKSE--KLWER-VQ 767 (1153)
T ss_pred CCCCCEEeCCCCCC-----ccccccccCCcC-eeecCCCc-----cccccccc-cccccccccccccchh--hcccc-cc
Confidence 44444442211110 00000 011222 22222111 01111111 2344555544432100 00000 00
Q ss_pred HhhhccCCCCCCcCeEEEeecC-CCCCCcCcCCCCCCCccEEEEeCCCCCCCCCCCCCCCCcCeEeecCCCCceEeCccc
Q 038637 788 TRVLSMLKPHRDVQELTIRGYG-GTKFPIWLGDSSFSKLVNLKFGYCRMCTSLPSVGQLPLLKHLKISGMDRVKSVGLEF 866 (962)
Q Consensus 788 ~~~~~~l~~~~~L~~L~l~~~~-~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~lp~L~~L~L~~~~~~~~~~~~~ 866 (962)
...+.....+++|+.|++++|. ...+|.++. .+++|+.|+|++|...+.+|...++++|+.|++++|..+..++.
T Consensus 768 ~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~--~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~-- 843 (1153)
T PLN03210 768 PLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQ--NLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPD-- 843 (1153)
T ss_pred ccchhhhhccccchheeCCCCCCccccChhhh--CCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccc--
Confidence 0000011224677888887764 445777764 67788888888887777777555777888888888776654432
Q ss_pred cCCCCCCCCCCcceeeccccccccccccccCCccccCcCCccceEeEccCCCccccCC---CCCCCcceEEEccccCccc
Q 038637 867 YGSSCSVPFPSLETLSFSDMREWEEWISCGAGQEVDEVFPKLRKLSLFNCYKLQGTLP---KRLLLLEKLVIKSCHRLLV 943 (962)
Q Consensus 867 ~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~lp---~~l~~L~~L~i~~c~~l~~ 943 (962)
..++|+.|+|+++ .++.++. ....+++|+.|++++|++|+ .+| ..+++|+.|++.+|.++..
T Consensus 844 -------~~~nL~~L~Ls~n-~i~~iP~------si~~l~~L~~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~C~~L~~ 908 (1153)
T PLN03210 844 -------ISTNISDLNLSRT-GIEEVPW------WIEKFSNLSFLDMNGCNNLQ-RVSLNISKLKHLETVDFSDCGALTE 908 (1153)
T ss_pred -------cccccCEeECCCC-CCccChH------HHhcCCCCCEEECCCCCCcC-ccCcccccccCCCeeecCCCccccc
Confidence 1457778887764 4444422 24467888888888888888 566 3467777788888887642
Q ss_pred c-C---------------CCCCCcCEEecCCCCCC
Q 038637 944 T-I---------------QCLPTLTELHTKLCRRV 962 (962)
Q Consensus 944 ~-l---------------~~l~~L~~L~l~~C~~L 962 (962)
. + ..+|+...+.+.+|.+|
T Consensus 909 ~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L 943 (1153)
T PLN03210 909 ASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNL 943 (1153)
T ss_pred ccCCCCchhhhhhcccccccCCchhccccccccCC
Confidence 1 1 12344455677777664
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.8e-43 Score=381.84 Aligned_cols=279 Identities=35% Similarity=0.602 Sum_probs=227.8
Q ss_pred chhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHhcc
Q 038637 206 REKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSIAN 285 (962)
Q Consensus 206 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~ 285 (962)
||.++++|.++|.... .+.++|+|+||||+||||||++++++..++.+|+.++|+.++...+...++..|+.+++.
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 7899999999998754 478999999999999999999999987789999999999999999999999999999988
Q ss_pred CCCC--CCccHHHHHHHHHhHhCCceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEEEecChhhHhhhCC-CCcccC
Q 038637 286 DQSN--NDDDLNLLQEKLKKQLSGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVVTTRNLDVANLTRA-YPKYGL 362 (962)
Q Consensus 286 ~~~~--~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~~-~~~~~l 362 (962)
.... ...+.+.....+++.|+++++||||||||+. ..|+.+...++....|++||||||+..++..+.. ...+++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l 154 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIEL 154 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEEC
T ss_pred cccccccccccccccccchhhhccccceeeeeeeccc--ccccccccccccccccccccccccccccccccccccccccc
Confidence 7432 4567778999999999999999999999875 5788888888777789999999999998877664 678999
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHHHHHHhhhcCCCChhHHHHHHhhhhhcccc---cc
Q 038637 363 KELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAAKTLGGLLRGKDDLTDWEFVLNTDIWKLQE---EN 439 (962)
Q Consensus 363 ~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~~L~~~~~~~~w~~~~~~~~~~~~~---~~ 439 (962)
++|++++|++||++.++... ....+..++.+++|+++|+|+||||+++|++|+.+.+..+|+.++++..+.... ..
T Consensus 155 ~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~ 233 (287)
T PF00931_consen 155 EPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYD 233 (287)
T ss_dssp SS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSC
T ss_pred cccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999987654 123445677899999999999999999999997766778999998876655432 23
Q ss_pred cCchhHHHhhccCCchhhHhHHhhhcCCCCCceeCHHHHHHHHHHcCCcccc
Q 038637 440 YGIIPALRVSYHFLPSQLKQCFAYCSLFPKDYEFQEEEIILLWTAEGFLDQE 491 (962)
Q Consensus 440 ~~i~~~l~~sy~~L~~~~k~cfl~~~~fp~~~~i~~~~li~~W~aeg~i~~~ 491 (962)
..+..++.+||+.||++.|.||+|||+||+++.|+++.++++|++||||...
T Consensus 234 ~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~~ 285 (287)
T PF00931_consen 234 RSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISSK 285 (287)
T ss_dssp HHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC--
T ss_pred ccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCccc
Confidence 5789999999999999999999999999999999999999999999999753
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.92 E-value=2.7e-24 Score=271.94 Aligned_cols=350 Identities=19% Similarity=0.215 Sum_probs=170.4
Q ss_pred ccCCCCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCc----------------------ccccccccC
Q 038637 580 VCDVEHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNI----------------------FNLPNEIGN 637 (962)
Q Consensus 580 ~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~----------------------~~lp~~i~~ 637 (962)
+..+++|+.|.+.++. +.+.+|..++.++++|++|+|++|... ..+|..+++
T Consensus 89 ~~~l~~L~~L~Ls~n~------~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~ 162 (968)
T PLN00113 89 IFRLPYIQTINLSNNQ------LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGS 162 (968)
T ss_pred HhCCCCCCEEECCCCc------cCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhc
Confidence 4456666666555432 233445444445555555555555222 234444555
Q ss_pred CCcCCeEeccCCCCc-cccccccccccCcEEeeCCCccccccchhcccCCCccEEecCCCCCccccCCCCCCCCCCCccC
Q 038637 638 LKHLRCLNLSRTRIQ-ILPESINSLYNLHTILLENCWELKKLCKDMGNLTKLRHLRNSDAGLLEEMPKGFGKLTSLLTLG 716 (962)
Q Consensus 638 L~~Lr~L~Ls~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 716 (962)
+.+|++|+|++|.+. .+|..++++++|++|++++|.....+|..++++++|++|++++|.....+|..++++++|++|.
T Consensus 163 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 242 (968)
T PLN00113 163 FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLD 242 (968)
T ss_pred CCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEE
Confidence 555555555555543 4455555555555555555533344455555555555555555544444555555555555543
Q ss_pred CeEeCCCCCCCcccccCcccCCCeEEEeccCCCCChhhhhhhcCcCCcCCCceEEeccCCCCCCccchhhHHhhhccCCC
Q 038637 717 RFVVGKDSGSGLRELKSLTHLQGTLRISKLENVEDVGDACEAQLNNKVNLRTLLLDWSARDVQNLDQCEFETRVLSMLKP 796 (962)
Q Consensus 717 ~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~ 796 (962)
.... ...+.....+.++++|+ .|.+.... .....+..+.++.+|+.|+++++. .....+..+..
T Consensus 243 L~~n-~l~~~~p~~l~~l~~L~-~L~L~~n~----l~~~~p~~l~~l~~L~~L~Ls~n~----------l~~~~p~~~~~ 306 (968)
T PLN00113 243 LVYN-NLTGPIPSSLGNLKNLQ-YLFLYQNK----LSGPIPPSIFSLQKLISLDLSDNS----------LSGEIPELVIQ 306 (968)
T ss_pred CcCc-eeccccChhHhCCCCCC-EEECcCCe----eeccCchhHhhccCcCEEECcCCe----------eccCCChhHcC
Confidence 2211 11112222334444444 44433211 111223334445555555555443 12234455566
Q ss_pred CCCcCeEEEeecCCC-CCCcCcCCCCCCCccEEEEeCCCCCCCCC-CCCCCCCcCeEeecCCCCceEeCccccCCC----
Q 038637 797 HRDVQELTIRGYGGT-KFPIWLGDSSFSKLVNLKFGYCRMCTSLP-SVGQLPLLKHLKISGMDRVKSVGLEFYGSS---- 870 (962)
Q Consensus 797 ~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L~~L~L~~~~~~~~~~~~~~~~~---- 870 (962)
+++|+.|++++|.+. ..|.++. .+++|+.|+|++|.+.+.+| .++.+++|+.|++++|.....++..+....
T Consensus 307 l~~L~~L~l~~n~~~~~~~~~~~--~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~ 384 (968)
T PLN00113 307 LQNLEILHLFSNNFTGKIPVALT--SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFK 384 (968)
T ss_pred CCCCcEEECCCCccCCcCChhHh--cCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCE
Confidence 677777777776654 3455553 57777777777777766666 566777777777776654333433332200
Q ss_pred --------------CCCCCCCcceeeccccccccccccccCCccccCcCCccceEeEccCCCccccCCC---CCCCcceE
Q 038637 871 --------------CSVPFPSLETLSFSDMREWEEWISCGAGQEVDEVFPKLRKLSLFNCYKLQGTLPK---RLLLLEKL 933 (962)
Q Consensus 871 --------------~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~lp~---~l~~L~~L 933 (962)
....+++|+.|++++|.-.... +.....+|+|+.|++++| .+++.+|. .+++|+.|
T Consensus 385 L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~------p~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L 457 (968)
T PLN00113 385 LILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL------PSEFTKLPLVYFLDISNN-NLQGRINSRKWDMPSLQML 457 (968)
T ss_pred EECcCCEecccCCHHHhCCCCCCEEECcCCEeeeEC------ChhHhcCCCCCEEECcCC-cccCccChhhccCCCCcEE
Confidence 0011344444444443211111 111234555566666554 44444442 35566666
Q ss_pred EEccccCcc--ccCCCCCCcCEEecCCCC
Q 038637 934 VIKSCHRLL--VTIQCLPTLTELHTKLCR 960 (962)
Q Consensus 934 ~i~~c~~l~--~~l~~l~~L~~L~l~~C~ 960 (962)
++.+|.... ......++|+.|++++|.
T Consensus 458 ~L~~n~~~~~~p~~~~~~~L~~L~ls~n~ 486 (968)
T PLN00113 458 SLARNKFFGGLPDSFGSKRLENLDLSRNQ 486 (968)
T ss_pred ECcCceeeeecCcccccccceEEECcCCc
Confidence 666665221 011123566677766654
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.90 E-value=1.3e-23 Score=265.90 Aligned_cols=352 Identities=20% Similarity=0.195 Sum_probs=199.9
Q ss_pred ccCCCCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCcccccccccCCCcCCeEeccCCCCc-cccccc
Q 038637 580 VCDVEHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQ-ILPESI 658 (962)
Q Consensus 580 ~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~-~lp~~i 658 (962)
+.++++|++|.+.++. +...+|.. +.++++|++|+|++|.....+|..++++++|++|+|++|.+. .+|..+
T Consensus 184 ~~~l~~L~~L~L~~n~------l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l 256 (968)
T PLN00113 184 LTNLTSLEFLTLASNQ------LVGQIPRE-LGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSL 256 (968)
T ss_pred hhhCcCCCeeeccCCC------CcCcCChH-HcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhH
Confidence 4556666666655432 22333433 456667777777766433456666677777777777776665 566666
Q ss_pred cccccCcEEeeCCCccccccchhcccCCCccEEecCCCCCccccCCCCCCCCCCCccCCeEeCCCCCCCcccccCcccCC
Q 038637 659 NSLYNLHTILLENCWELKKLCKDMGNLTKLRHLRNSDAGLLEEMPKGFGKLTSLLTLGRFVVGKDSGSGLRELKSLTHLQ 738 (962)
Q Consensus 659 ~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~ 738 (962)
+++++|++|++++|...+.+|..+.++++|++|++++|.....+|..++++++|+.|..... ...+.....+..+++|+
T Consensus 257 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~ 335 (968)
T PLN00113 257 GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSN-NFTGKIPVALTSLPRLQ 335 (968)
T ss_pred hCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCC-ccCCcCChhHhcCCCCC
Confidence 77777777777766444556666666777777777766655556666666666666643221 11122223344555555
Q ss_pred CeEEEeccCCCCChhhhhhhcCcCCcCCCceEEeccCCCCC--------------CccchhhHHhhhccCCCCCCcCeEE
Q 038637 739 GTLRISKLENVEDVGDACEAQLNNKVNLRTLLLDWSARDVQ--------------NLDQCEFETRVLSMLKPHRDVQELT 804 (962)
Q Consensus 739 ~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--------------~~~~~~~~~~~~~~l~~~~~L~~L~ 804 (962)
.|.+.... .....+..+..+.+|+.|+++++..... .+..+......+..+..+++|+.|+
T Consensus 336 -~L~L~~n~----l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~ 410 (968)
T PLN00113 336 -VLQLWSNK----FSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVR 410 (968)
T ss_pred -EEECcCCC----CcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEE
Confidence 55544322 1122334455556666666655441100 0001111222333444455566666
Q ss_pred EeecCCC-CCCcCcCCCCCCCccEEEEeCCCCCCCCC-CCCCCCCcCeEeecCCCCceEeCccccCCCCCCCCCCcceee
Q 038637 805 IRGYGGT-KFPIWLGDSSFSKLVNLKFGYCRMCTSLP-SVGQLPLLKHLKISGMDRVKSVGLEFYGSSCSVPFPSLETLS 882 (962)
Q Consensus 805 l~~~~~~-~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~ 882 (962)
+++|.+. .+|..+. .+++|+.|++++|.+.+.+| .+..+++|+.|++++|.....++..+ ..++|+.|+
T Consensus 411 L~~n~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-------~~~~L~~L~ 481 (968)
T PLN00113 411 LQDNSFSGELPSEFT--KLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-------GSKRLENLD 481 (968)
T ss_pred CcCCEeeeECChhHh--cCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-------ccccceEEE
Confidence 6655443 3344443 45666666666666555444 34456666666666655433333221 145677777
Q ss_pred ccccccccccccccCCccccCcCCccceEeEccCCCccccCC---CCCCCcceEEEccccC---ccccCCCCCCcCEEec
Q 038637 883 FSDMREWEEWISCGAGQEVDEVFPKLRKLSLFNCYKLQGTLP---KRLLLLEKLVIKSCHR---LLVTIQCLPTLTELHT 956 (962)
Q Consensus 883 l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~lp---~~l~~L~~L~i~~c~~---l~~~l~~l~~L~~L~l 956 (962)
+++|.-.... +.....+++|+.|++++| .+.+.+| ..+++|+.|+|++|.- ++..+.++++|+.|++
T Consensus 482 ls~n~l~~~~------~~~~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 554 (968)
T PLN00113 482 LSRNQFSGAV------PRKLGSLSELMQLKLSEN-KLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDL 554 (968)
T ss_pred CcCCccCCcc------ChhhhhhhccCEEECcCC-cceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEEC
Confidence 7765422221 112345788899999987 6766777 3568889999988863 3456778899999999
Q ss_pred CCCC
Q 038637 957 KLCR 960 (962)
Q Consensus 957 ~~C~ 960 (962)
++|.
T Consensus 555 s~N~ 558 (968)
T PLN00113 555 SQNQ 558 (968)
T ss_pred CCCc
Confidence 9886
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.83 E-value=1.2e-19 Score=229.18 Aligned_cols=316 Identities=21% Similarity=0.260 Sum_probs=195.2
Q ss_pred cchhhhCCCCcccEEEeCCCc------CcccccccccCCC-cCCeEeccCCCCccccccccccccCcEEeeCCCcccccc
Q 038637 606 VPHMLLNHLPRLRVFSLCGYC------NIFNLPNEIGNLK-HLRCLNLSRTRIQILPESINSLYNLHTILLENCWELKKL 678 (962)
Q Consensus 606 ~~~~~l~~l~~Lr~L~L~~~~------~~~~lp~~i~~L~-~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~l 678 (962)
+....|.+|++|+.|.+.++. ....+|..+..++ .||+|++.++.++.+|..+ .+.+|+.|++.+| .+..+
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s-~l~~L 626 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGS-KLEKL 626 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCc-ccccc
Confidence 344557788888888875431 1123455555543 4677777666666666665 3566666666666 56666
Q ss_pred chhcccCCCccEEecCCCCCccccCCCCCCCCCCCccCCeEeCCCCCCCcccccCcccCCCeEEEeccCCCCChhhhhhh
Q 038637 679 CKDMGNLTKLRHLRNSDAGLLEEMPKGFGKLTSLLTLGRFVVGKDSGSGLRELKSLTHLQGTLRISKLENVEDVGDACEA 758 (962)
Q Consensus 679 p~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~ 758 (962)
|.++..+++|+.|+++++..+..+| .++.+++|++|........ ......+.++++|+ .|.+.++.++... +.
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L-~~lp~si~~L~~L~-~L~L~~c~~L~~L----p~ 699 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSL-VELPSSIQYLNKLE-DLDMSRCENLEIL----PT 699 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCc-cccchhhhccCCCC-EEeCCCCCCcCcc----CC
Confidence 6666666666666666655455555 3555666666633221111 11122344555555 5555544433222 11
Q ss_pred cCcCCcCCCceEEeccCCCCCCccchhhHHhhhccCCCCCCcCeEEEeecCCCCCCcCcC--------------------
Q 038637 759 QLNNKVNLRTLLLDWSARDVQNLDQCEFETRVLSMLKPHRDVQELTIRGYGGTKFPIWLG-------------------- 818 (962)
Q Consensus 759 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~-------------------- 818 (962)
.+ ++++|+.|.++++. . ...++. .+.+|+.|+++++.+..+|..+.
T Consensus 700 ~i-~l~sL~~L~Lsgc~-~---------L~~~p~---~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~ 765 (1153)
T PLN03210 700 GI-NLKSLYRLNLSGCS-R---------LKSFPD---ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWER 765 (1153)
T ss_pred cC-CCCCCCEEeCCCCC-C---------cccccc---ccCCcCeeecCCCccccccccccccccccccccccchhhcccc
Confidence 11 44566666665543 1 001111 12345555555555444443321
Q ss_pred --------CCCCCCccEEEEeCCCCCCCCC-CCCCCCCcCeEeecCCCCceEeCccccCCCCCCCCCCcceeeccccccc
Q 038637 819 --------DSSFSKLVNLKFGYCRMCTSLP-SVGQLPLLKHLKISGMDRVKSVGLEFYGSSCSVPFPSLETLSFSDMREW 889 (962)
Q Consensus 819 --------~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l 889 (962)
...+++|+.|+|++|.....+| .++++++|+.|+|++|+.++.++... .+++|+.|+|++|..+
T Consensus 766 ~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-------~L~sL~~L~Ls~c~~L 838 (1153)
T PLN03210 766 VQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-------NLESLESLDLSGCSRL 838 (1153)
T ss_pred ccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-------CccccCEEECCCCCcc
Confidence 0123578888888887777777 67888999999999888888776543 2788999999988877
Q ss_pred cccccccCCccccCcCCccceEeEccCCCccccCC---CCCCCcceEEEccccCccc---cCCCCCCcCEEecCCCCCC
Q 038637 890 EEWISCGAGQEVDEVFPKLRKLSLFNCYKLQGTLP---KRLLLLEKLVIKSCHRLLV---TIQCLPTLTELHTKLCRRV 962 (962)
Q Consensus 890 ~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~lp---~~l~~L~~L~i~~c~~l~~---~l~~l~~L~~L~l~~C~~L 962 (962)
..++. ..++|+.|+++++ .++ .+| ..+++|+.|++.+|+++.. .+..+++|+.|++++|++|
T Consensus 839 ~~~p~---------~~~nL~~L~Ls~n-~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L 906 (1153)
T PLN03210 839 RTFPD---------ISTNISDLNLSRT-GIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGAL 906 (1153)
T ss_pred ccccc---------cccccCEeECCCC-CCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCccc
Confidence 66532 3568899999886 777 688 4578999999999998743 3566889999999999875
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.82 E-value=1.7e-22 Score=215.88 Aligned_cols=322 Identities=20% Similarity=0.226 Sum_probs=228.1
Q ss_pred CceeEEEEEeeccccccccccccCCCCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCcccccccccCC
Q 038637 559 QTLRHFSYICREYDGKKRLESVCDVEHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFNLPNEIGNL 638 (962)
Q Consensus 559 ~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~lp~~i~~L 638 (962)
++..|+++..+... ....++..++.||++.+..+. .-...+|..+| ++..|.+||||+| .+.+.|..+..-
T Consensus 55 qkLEHLs~~HN~L~--~vhGELs~Lp~LRsv~~R~N~-----LKnsGiP~diF-~l~dLt~lDLShN-qL~EvP~~LE~A 125 (1255)
T KOG0444|consen 55 QKLEHLSMAHNQLI--SVHGELSDLPRLRSVIVRDNN-----LKNSGIPTDIF-RLKDLTILDLSHN-QLREVPTNLEYA 125 (1255)
T ss_pred hhhhhhhhhhhhhH--hhhhhhccchhhHHHhhhccc-----cccCCCCchhc-ccccceeeecchh-hhhhcchhhhhh
Confidence 34567776655322 223467788999999888753 22345677755 6999999999999 799999999999
Q ss_pred CcCCeEeccCCCCccccccc-cccccCcEEeeCCCccccccchhcccCCCccEEecCCCCCccccCCCCCCCCCCCccCC
Q 038637 639 KHLRCLNLSRTRIQILPESI-NSLYNLHTILLENCWELKKLCKDMGNLTKLRHLRNSDAGLLEEMPKGFGKLTSLLTLGR 717 (962)
Q Consensus 639 ~~Lr~L~Ls~~~i~~lp~~i-~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~ 717 (962)
+++-.|+||+|+|..+|.++ .+|..|-+|||++| .++.+|+.+..|.+|+.|.+++|+...---..+..+++|++|+.
T Consensus 126 Kn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhm 204 (1255)
T KOG0444|consen 126 KNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHM 204 (1255)
T ss_pred cCcEEEEcccCccccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhc
Confidence 99999999999999999875 48999999999999 89999999999999999999999742211122334666666654
Q ss_pred eEeCCCCCCCcccccCcccCCCeEEEeccCCCCChhhhhhhcCcCCcCCCceEEeccCCCCCCccchhhHHhhhccCCCC
Q 038637 718 FVVGKDSGSGLRELKSLTHLQGTLRISKLENVEDVGDACEAQLNNKVNLRTLLLDWSARDVQNLDQCEFETRVLSMLKPH 797 (962)
Q Consensus 718 ~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 797 (962)
-.....-......+..|.+|+ .+.++.. .....+..+-++.+|+.|+++.+.+. +.--.....
T Consensus 205 s~TqRTl~N~Ptsld~l~NL~-dvDlS~N-----~Lp~vPecly~l~~LrrLNLS~N~it-----------eL~~~~~~W 267 (1255)
T KOG0444|consen 205 SNTQRTLDNIPTSLDDLHNLR-DVDLSEN-----NLPIVPECLYKLRNLRRLNLSGNKIT-----------ELNMTEGEW 267 (1255)
T ss_pred ccccchhhcCCCchhhhhhhh-hcccccc-----CCCcchHHHhhhhhhheeccCcCcee-----------eeeccHHHH
Confidence 333322223334444455554 3333221 11224456667788888888876521 111111223
Q ss_pred CCcCeEEEeecCCCCCCcCcCCCCCCCccEEEEeCCCCC-CCCC-CCCCCCCcCeEeecCCCCceEeCccccCCCCCCCC
Q 038637 798 RDVQELTIRGYGGTKFPIWLGDSSFSKLVNLKFGYCRMC-TSLP-SVGQLPLLKHLKISGMDRVKSVGLEFYGSSCSVPF 875 (962)
Q Consensus 798 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~-~~l~-~l~~lp~L~~L~L~~~~~~~~~~~~~~~~~~~~~f 875 (962)
.+|+.|+++.|+.+.+|..++ .+++|+.|.+.+|.+. +.+| .+|.|.+|+.+...+| .++-+|..++. |
T Consensus 268 ~~lEtLNlSrNQLt~LP~avc--KL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN-~LElVPEglcR------C 338 (1255)
T KOG0444|consen 268 ENLETLNLSRNQLTVLPDAVC--KLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANN-KLELVPEGLCR------C 338 (1255)
T ss_pred hhhhhhccccchhccchHHHh--hhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhcc-ccccCchhhhh------h
Confidence 578889999999999999887 7899999999988877 5677 6889999999988864 57777777665 8
Q ss_pred CCcceeeccccccccccccccCCccccCcCCccceEeEccCCCccccCC
Q 038637 876 PSLETLSFSDMREWEEWISCGAGQEVDEVFPKLRKLSLFNCYKLQGTLP 924 (962)
Q Consensus 876 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~lp 924 (962)
+.|+.|.|+.+. |-.. +.....+|.|+.|++.++|+|. .-|
T Consensus 339 ~kL~kL~L~~Nr-LiTL------PeaIHlL~~l~vLDlreNpnLV-MPP 379 (1255)
T KOG0444|consen 339 VKLQKLKLDHNR-LITL------PEAIHLLPDLKVLDLRENPNLV-MPP 379 (1255)
T ss_pred HHHHHhcccccc-eeec------hhhhhhcCCcceeeccCCcCcc-CCC
Confidence 899999998753 3222 2235568999999999999987 444
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.78 E-value=2.9e-21 Score=206.44 Aligned_cols=317 Identities=25% Similarity=0.271 Sum_probs=232.3
Q ss_pred cccCCCCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCcc--cccccccCCCcCCeEeccCCCCccccc
Q 038637 579 SVCDVEHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIF--NLPNEIGNLKHLRCLNLSRTRIQILPE 656 (962)
Q Consensus 579 ~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~--~lp~~i~~L~~Lr~L~Ls~~~i~~lp~ 656 (962)
++..+.+|..|.+..+. +. + ..+-++.++.||.+++..| ++. .+|..|..|..|..||||+|.+++.|.
T Consensus 50 EL~~lqkLEHLs~~HN~------L~-~-vhGELs~Lp~LRsv~~R~N-~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~ 120 (1255)
T KOG0444|consen 50 ELSRLQKLEHLSMAHNQ------LI-S-VHGELSDLPRLRSVIVRDN-NLKNSGIPTDIFRLKDLTILDLSHNQLREVPT 120 (1255)
T ss_pred HHHHHhhhhhhhhhhhh------hH-h-hhhhhccchhhHHHhhhcc-ccccCCCCchhcccccceeeecchhhhhhcch
Confidence 34556666666555432 11 1 1233678899999999988 443 479999999999999999999999999
Q ss_pred cccccccCcEEeeCCCccccccchhc-ccCCCccEEecCCCCCccccCCCCCCCCCCCccCCeEeCCCCCCCcccccCcc
Q 038637 657 SINSLYNLHTILLENCWELKKLCKDM-GNLTKLRHLRNSDAGLLEEMPKGFGKLTSLLTLGRFVVGKDSGSGLRELKSLT 735 (962)
Q Consensus 657 ~i~~L~~L~~L~L~~~~~l~~lp~~i-~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~ 735 (962)
.+.+-.++-+|+|++| +++.+|..+ .+|+.|-+|+++.|. +..+|+.+.+|..||+|..... .....-+..|++++
T Consensus 121 ~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~N-PL~hfQLrQLPsmt 197 (1255)
T KOG0444|consen 121 NLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNN-PLNHFQLRQLPSMT 197 (1255)
T ss_pred hhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCC-hhhHHHHhcCccch
Confidence 9999999999999999 899999864 799999999999998 8999999999999999954221 11222334444444
Q ss_pred cCCCeEEEeccCCCCChhhhhhhcCcCCcCCCceEEeccCCCCCCccchhhHHhhhccCCCCCCcCeEEEeecCCCCCCc
Q 038637 736 HLQGTLRISKLENVEDVGDACEAQLNNKVNLRTLLLDWSARDVQNLDQCEFETRVLSMLKPHRDVQELTIRGYGGTKFPI 815 (962)
Q Consensus 736 ~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~ 815 (962)
.| .+..+.+.......++.++..+.+|..++++.++ ...+|+.+-.+++|+.|+|++|.++.+..
T Consensus 198 sL----~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~-----------Lp~vPecly~l~~LrrLNLS~N~iteL~~ 262 (1255)
T KOG0444|consen 198 SL----SVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN-----------LPIVPECLYKLRNLRRLNLSGNKITELNM 262 (1255)
T ss_pred hh----hhhhcccccchhhcCCCchhhhhhhhhccccccC-----------CCcchHHHhhhhhhheeccCcCceeeeec
Confidence 44 4444455555566777888888899999888776 23567777888899999999998887655
Q ss_pred CcCCCCCCCccEEEEeCCCCCCCCC-CCCCCCCcCeEeecCCCCceE--eCccccCCCCCCCCCCcceeecccccccccc
Q 038637 816 WLGDSSFSKLVNLKFGYCRMCTSLP-SVGQLPLLKHLKISGMDRVKS--VGLEFYGSSCSVPFPSLETLSFSDMREWEEW 892 (962)
Q Consensus 816 ~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L~~L~L~~~~~~~~--~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~ 892 (962)
... ...+|+.|+|+.|+++ .+| .+..|+.|+.|.+.+|. +.. +|..+ +.+.+|+.+...+ ++|+-.
T Consensus 263 ~~~--~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~Nk-L~FeGiPSGI------GKL~~Levf~aan-N~LElV 331 (1255)
T KOG0444|consen 263 TEG--EWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNK-LTFEGIPSGI------GKLIQLEVFHAAN-NKLELV 331 (1255)
T ss_pred cHH--HHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCc-ccccCCccch------hhhhhhHHHHhhc-cccccC
Confidence 443 5678999999998865 466 77888999998887653 222 22221 2266777777776 345443
Q ss_pred ccccCCccccCcCCccceEeEccCCCccccCCC---CCCCcceEEEccccCc
Q 038637 893 ISCGAGQEVDEVFPKLRKLSLFNCYKLQGTLPK---RLLLLEKLVIKSCHRL 941 (962)
Q Consensus 893 ~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~lp~---~l~~L~~L~i~~c~~l 941 (962)
+ ....-++.|+.|.++.+ .|. .+|. -++.|+.|++..++++
T Consensus 332 P------EglcRC~kL~kL~L~~N-rLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 332 P------EGLCRCVKLQKLKLDHN-RLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred c------hhhhhhHHHHHhccccc-cee-echhhhhhcCCcceeeccCCcCc
Confidence 2 12345788999998886 666 5885 3688888888888887
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.74 E-value=7.2e-19 Score=187.54 Aligned_cols=354 Identities=20% Similarity=0.250 Sum_probs=213.8
Q ss_pred CCceeEEEEEeeccccccccccccCCCCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCccccc-cccc
Q 038637 558 SQTLRHFSYICREYDGKKRLESVCDVEHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFNLP-NEIG 636 (962)
Q Consensus 558 ~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~lp-~~i~ 636 (962)
+...+-+.+..+... ...+..|.++++|+.+.+..+. ...+|.. -....+|+.|+|.+| .+..+. +++.
T Consensus 77 p~~t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~-------Lt~IP~f-~~~sghl~~L~L~~N-~I~sv~se~L~ 146 (873)
T KOG4194|consen 77 PSQTQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNE-------LTRIPRF-GHESGHLEKLDLRHN-LISSVTSEELS 146 (873)
T ss_pred ccceeeeeccccccc-cCcHHHHhcCCcceeeeeccch-------hhhcccc-cccccceeEEeeecc-ccccccHHHHH
Confidence 344444444443221 1223445566666666555432 1234431 223445777777777 555553 4566
Q ss_pred CCCcCCeEeccCCCCccccc-cccccccCcEEeeCCCcccccc-chhcccCCCccEEecCCCCCccccCC-CCCCCCCCC
Q 038637 637 NLKHLRCLNLSRTRIQILPE-SINSLYNLHTILLENCWELKKL-CKDMGNLTKLRHLRNSDAGLLEEMPK-GFGKLTSLL 713 (962)
Q Consensus 637 ~L~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~-~i~~l~~L~ 713 (962)
-++.||.||||.|.|+++|. ++..-.++++|+|++| .++.+ -..|..|.+|..|.++.|. +..+|. .|.+|++|+
T Consensus 147 ~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N-~It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~ 224 (873)
T KOG4194|consen 147 ALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASN-RITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLE 224 (873)
T ss_pred hHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccc-cccccccccccccchheeeecccCc-ccccCHHHhhhcchhh
Confidence 67777777777777777665 4555577777777777 44444 3346677777777777777 555554 455677777
Q ss_pred ccCCeEe--CCCCCCCcccccCcccCCCeEEEeccCCCCChhhhhhhcCcCCcCCCceEEeccCCCCCCccchhhHHhhh
Q 038637 714 TLGRFVV--GKDSGSGLRELKSLTHLQGTLRISKLENVEDVGDACEAQLNNKVNLRTLLLDWSARDVQNLDQCEFETRVL 791 (962)
Q Consensus 714 ~L~~~~~--~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 791 (962)
.|..... ....+..++.|.+|.+|+ |.-.++.... ...+-.+.+++.|+|..+.. ..---
T Consensus 225 ~LdLnrN~irive~ltFqgL~Sl~nlk--lqrN~I~kL~------DG~Fy~l~kme~l~L~~N~l----------~~vn~ 286 (873)
T KOG4194|consen 225 SLDLNRNRIRIVEGLTFQGLPSLQNLK--LQRNDISKLD------DGAFYGLEKMEHLNLETNRL----------QAVNE 286 (873)
T ss_pred hhhccccceeeehhhhhcCchhhhhhh--hhhcCccccc------Ccceeeecccceeecccchh----------hhhhc
Confidence 7643221 112233445555555543 2212221111 12344566778888776652 22223
Q ss_pred ccCCCCCCcCeEEEeecCCCCC--CcCcCCCCCCCccEEEEeCCCCCCCCC-CCCCCCCcCeEeecCCCCceEeCc-ccc
Q 038637 792 SMLKPHRDVQELTIRGYGGTKF--PIWLGDSSFSKLVNLKFGYCRMCTSLP-SVGQLPLLKHLKISGMDRVKSVGL-EFY 867 (962)
Q Consensus 792 ~~l~~~~~L~~L~l~~~~~~~~--p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L~~L~L~~~~~~~~~~~-~~~ 867 (962)
.++..+..|+.|+++.|.+.++ ..|- ..++|++|+|++|.+..--+ .+..|..|+.|.|++|. +..+.. .|.
T Consensus 287 g~lfgLt~L~~L~lS~NaI~rih~d~Ws---ftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns-i~~l~e~af~ 362 (873)
T KOG4194|consen 287 GWLFGLTSLEQLDLSYNAIQRIHIDSWS---FTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS-IDHLAEGAFV 362 (873)
T ss_pred ccccccchhhhhccchhhhheeecchhh---hcccceeEeccccccccCChhHHHHHHHhhhhcccccc-hHHHHhhHHH
Confidence 4567788999999999988765 4454 57899999999998764323 67778899999999864 444432 232
Q ss_pred CCCCCCCCCCcceeeccccccccccccccCCccccCcCCccceEeEccCCCccccCC----CCCCCcceEEEccccCc--
Q 038637 868 GSSCSVPFPSLETLSFSDMREWEEWISCGAGQEVDEVFPKLRKLSLFNCYKLQGTLP----KRLLLLEKLVIKSCHRL-- 941 (962)
Q Consensus 868 ~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~lp----~~l~~L~~L~i~~c~~l-- 941 (962)
+ +.+|+.|+|+++. + +|...+... ....+|+|++|++.++ +|+ .+| .++++|+.|++.++.-.
T Consensus 363 ~------lssL~~LdLr~N~-l-s~~IEDaa~-~f~gl~~LrkL~l~gN-qlk-~I~krAfsgl~~LE~LdL~~NaiaSI 431 (873)
T KOG4194|consen 363 G------LSSLHKLDLRSNE-L-SWCIEDAAV-AFNGLPSLRKLRLTGN-QLK-SIPKRAFSGLEALEHLDLGDNAIASI 431 (873)
T ss_pred H------hhhhhhhcCcCCe-E-EEEEecchh-hhccchhhhheeecCc-eee-ecchhhhccCcccceecCCCCcceee
Confidence 2 7899999999853 3 333322111 1234999999999997 898 788 46889999999887632
Q ss_pred -cccCCCCCCcCEEecC
Q 038637 942 -LVTIQCLPTLTELHTK 957 (962)
Q Consensus 942 -~~~l~~l~~L~~L~l~ 957 (962)
+..+..+ .|++|-+.
T Consensus 432 q~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 432 QPNAFEPM-ELKELVMN 447 (873)
T ss_pred cccccccc-hhhhhhhc
Confidence 2334444 56655543
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.72 E-value=1.2e-19 Score=185.34 Aligned_cols=221 Identities=23% Similarity=0.244 Sum_probs=116.8
Q ss_pred CCCCcccEEEeCCCcCcccccccccCCCcCCeEeccCCCCccccccccccccCcEEeeCCCccccccchhcccCCCccEE
Q 038637 612 NHLPRLRVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLENCWELKKLCKDMGNLTKLRHL 691 (962)
Q Consensus 612 ~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 691 (962)
..+..+..|+.++| .+..+|..++.+..|+.|++++|.+.++|++|+.+..|+.|+..+| .+..+|.++.++.+|..|
T Consensus 88 g~l~~l~~l~vs~n-~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N-~i~slp~~~~~~~~l~~l 165 (565)
T KOG0472|consen 88 GELEALKSLNVSHN-KLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNN-QISSLPEDMVNLSKLSKL 165 (565)
T ss_pred HHHHHHHHhhcccc-hHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhcccc-ccccCchHHHHHHHHHHh
Confidence 33444445555555 4555555555555555555555555555555555555555555554 455555555555555555
Q ss_pred ecCCCCCccccCCCCCCCCCCCccCCeEeCCCCCCCcccccCcccCCCeEEEeccCCCCChhhhhhhcCcCCcCCCceEE
Q 038637 692 RNSDAGLLEEMPKGFGKLTSLLTLGRFVVGKDSGSGLRELKSLTHLQGTLRISKLENVEDVGDACEAQLNNKVNLRTLLL 771 (962)
Q Consensus 692 ~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l 771 (962)
++.+|. +..+|+..-+++.|++|...... -+....+++.|..|. .|.+ ..- .-.+...+.++..|..|++
T Consensus 166 ~~~~n~-l~~l~~~~i~m~~L~~ld~~~N~--L~tlP~~lg~l~~L~-~LyL---~~N---ki~~lPef~gcs~L~Elh~ 235 (565)
T KOG0472|consen 166 DLEGNK-LKALPENHIAMKRLKHLDCNSNL--LETLPPELGGLESLE-LLYL---RRN---KIRFLPEFPGCSLLKELHV 235 (565)
T ss_pred hccccc-hhhCCHHHHHHHHHHhcccchhh--hhcCChhhcchhhhH-HHHh---hhc---ccccCCCCCccHHHHHHHh
Confidence 555554 44444444345555555321110 111122233332221 1111 000 0001112333333333333
Q ss_pred eccCCCCCCccchhhHHhhhccCCCCCCcCeEEEeecCCCCCCcCcCCCCCCCccEEEEeCCCCCCCCCCCCCCCCcCeE
Q 038637 772 DWSARDVQNLDQCEFETRVLSMLKPHRDVQELTIRGYGGTKFPIWLGDSSFSKLVNLKFGYCRMCTSLPSVGQLPLLKHL 851 (962)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~lp~L~~L 851 (962)
..+. ......+.+..+++|..|++..|++..+|..++ -+.+|.+|++++|.+..-.+.+|++ +|+.|
T Consensus 236 g~N~----------i~~lpae~~~~L~~l~vLDLRdNklke~Pde~c--lLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L 302 (565)
T KOG0472|consen 236 GENQ----------IEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEIC--LLRSLERLDLSNNDISSLPYSLGNL-HLKFL 302 (565)
T ss_pred cccH----------HHhhHHHHhcccccceeeeccccccccCchHHH--HhhhhhhhcccCCccccCCcccccc-eeeeh
Confidence 2222 122223345577889999999999999998886 6888999999998877644588988 89999
Q ss_pred eecCCC
Q 038637 852 KISGMD 857 (962)
Q Consensus 852 ~L~~~~ 857 (962)
.+.+|+
T Consensus 303 ~leGNP 308 (565)
T KOG0472|consen 303 ALEGNP 308 (565)
T ss_pred hhcCCc
Confidence 888875
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.71 E-value=2.7e-18 Score=183.18 Aligned_cols=320 Identities=21% Similarity=0.220 Sum_probs=228.3
Q ss_pred ccccc-CCCCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCccccc-ccccCCCcCCeEeccCCCCccc
Q 038637 577 LESVC-DVEHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFNLP-NEIGNLKHLRCLNLSRTRIQIL 654 (962)
Q Consensus 577 ~~~~~-~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~lp-~~i~~L~~Lr~L~Ls~~~i~~l 654 (962)
.+.+. ...++..|.+.++. ..++-...++-++.||+||||.| .+..+| .++..-.++++|+|++|+|+.+
T Consensus 117 IP~f~~~sghl~~L~L~~N~-------I~sv~se~L~~l~alrslDLSrN-~is~i~~~sfp~~~ni~~L~La~N~It~l 188 (873)
T KOG4194|consen 117 IPRFGHESGHLEKLDLRHNL-------ISSVTSEELSALPALRSLDLSRN-LISEIPKPSFPAKVNIKKLNLASNRITTL 188 (873)
T ss_pred cccccccccceeEEeeeccc-------cccccHHHHHhHhhhhhhhhhhc-hhhcccCCCCCCCCCceEEeecccccccc
Confidence 34443 34568888777642 34455566788999999999999 788888 5677778999999999999977
Q ss_pred cc-cccccccCcEEeeCCCccccccch-hcccCCCccEEecCCCCCcccc-CCCCCCCCCCCccCC--eEeCCCCCCCcc
Q 038637 655 PE-SINSLYNLHTILLENCWELKKLCK-DMGNLTKLRHLRNSDAGLLEEM-PKGFGKLTSLLTLGR--FVVGKDSGSGLR 729 (962)
Q Consensus 655 p~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~-p~~i~~l~~L~~L~~--~~~~~~~~~~~~ 729 (962)
-. .|.+|.+|-+|.|+.| .+..+|. .|.+|++|+.|++..|. +..+ -..|..|.+|+.|.. ..+....+..+.
T Consensus 189 ~~~~F~~lnsL~tlkLsrN-rittLp~r~Fk~L~~L~~LdLnrN~-irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy 266 (873)
T KOG4194|consen 189 ETGHFDSLNSLLTLKLSRN-RITTLPQRSFKRLPKLESLDLNRNR-IRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFY 266 (873)
T ss_pred ccccccccchheeeecccC-cccccCHHHhhhcchhhhhhccccc-eeeehhhhhcCchhhhhhhhhhcCcccccCccee
Confidence 54 6888999999999999 7777776 45679999999999987 3333 234677888887743 233344455667
Q ss_pred cccCcccCCCeEEEeccCCCCChhhhhhhcCcCCcCCCceEEeccCCCCCCccchhhHHhhhccCCCCCCcCeEEEeecC
Q 038637 730 ELKSLTHLQGTLRISKLENVEDVGDACEAQLNNKVNLRTLLLDWSARDVQNLDQCEFETRVLSMLKPHRDVQELTIRGYG 809 (962)
Q Consensus 730 ~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 809 (962)
.+.++..| .|....+..+ ....+-++..|+.|+++++. +....++.+..+++|+.|+|+.|.
T Consensus 267 ~l~kme~l--~L~~N~l~~v------n~g~lfgLt~L~~L~lS~Na----------I~rih~d~WsftqkL~~LdLs~N~ 328 (873)
T KOG4194|consen 267 GLEKMEHL--NLETNRLQAV------NEGWLFGLTSLEQLDLSYNA----------IQRIHIDSWSFTQKLKELDLSSNR 328 (873)
T ss_pred eeccccee--ecccchhhhh------hcccccccchhhhhccchhh----------hheeecchhhhcccceeEeccccc
Confidence 77777665 3443333332 22446678889999988876 234456778888999999999999
Q ss_pred CCCCCcCcCCCCCCCccEEEEeCCCCCCCCC--CCCCCCCcCeEeecCCCCceEeCccccCCCCCCCCCCcceeeccccc
Q 038637 810 GTKFPIWLGDSSFSKLVNLKFGYCRMCTSLP--SVGQLPLLKHLKISGMDRVKSVGLEFYGSSCSVPFPSLETLSFSDMR 887 (962)
Q Consensus 810 ~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~--~l~~lp~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~ 887 (962)
++++++.-. ..++.|+.|.|++|.+.- +. .+..+.+|+.|+|++|..-..+...- ....++|+|+.|.|.+ +
T Consensus 329 i~~l~~~sf-~~L~~Le~LnLs~Nsi~~-l~e~af~~lssL~~LdLr~N~ls~~IEDaa---~~f~gl~~LrkL~l~g-N 402 (873)
T KOG4194|consen 329 ITRLDEGSF-RVLSQLEELNLSHNSIDH-LAEGAFVGLSSLHKLDLRSNELSWCIEDAA---VAFNGLPSLRKLRLTG-N 402 (873)
T ss_pred cccCChhHH-HHHHHhhhhcccccchHH-HHhhHHHHhhhhhhhcCcCCeEEEEEecch---hhhccchhhhheeecC-c
Confidence 999876443 268899999999998652 22 56778999999999876443442211 1123399999999999 4
Q ss_pred cccccccccCCccccCcCCccceEeEccCCCccccCC---CCCCCcceEEEcc
Q 038637 888 EWEEWISCGAGQEVDEVFPKLRKLSLFNCYKLQGTLP---KRLLLLEKLVIKS 937 (962)
Q Consensus 888 ~l~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~lp---~~l~~L~~L~i~~ 937 (962)
+++.+.. .....+++|+.|++.+++ +.+.=| ..+ .|++|.+..
T Consensus 403 qlk~I~k-----rAfsgl~~LE~LdL~~Na-iaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 403 QLKSIPK-----RAFSGLEALEHLDLGDNA-IASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred eeeecch-----hhhccCcccceecCCCCc-ceeecccccccc-hhhhhhhcc
Confidence 6777754 123458999999999974 442233 234 788887754
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.57 E-value=1.4e-16 Score=179.71 Aligned_cols=155 Identities=19% Similarity=0.252 Sum_probs=111.6
Q ss_pred hhccCCCCCCcCeEEEeecCCCCCCcCcC------------------------CCCCCCccEEEEeCCCCCC-CCCCCCC
Q 038637 790 VLSMLKPHRDVQELTIRGYGGTKFPIWLG------------------------DSSFSKLVNLKFGYCRMCT-SLPSVGQ 844 (962)
Q Consensus 790 ~~~~l~~~~~L~~L~l~~~~~~~~p~~~~------------------------~~~l~~L~~L~L~~~~~~~-~l~~l~~ 844 (962)
++..+.+.++|+.|++..|.+..+|..+. ...++.|+.|++.+|.+.+ .+|.+.+
T Consensus 302 ip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~ 381 (1081)
T KOG0618|consen 302 IPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVN 381 (1081)
T ss_pred CCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhcc
Confidence 44556667889999999888877775321 1245678889999999885 4788999
Q ss_pred CCCcCeEeecCCCCceEeCccccCCCCCCCCCCcceeeccccccccccccccCCccccCcCCccceEeEccCCCccccCC
Q 038637 845 LPLLKHLKISGMDRVKSVGLEFYGSSCSVPFPSLETLSFSDMREWEEWISCGAGQEVDEVFPKLRKLSLFNCYKLQGTLP 924 (962)
Q Consensus 845 lp~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~lp 924 (962)
.++|+.|+|++| .+..++...... ++.|+.|+|+++ +|+.++. ....++.|+.|...+| .|. .+|
T Consensus 382 ~~hLKVLhLsyN-rL~~fpas~~~k-----le~LeeL~LSGN-kL~~Lp~------tva~~~~L~tL~ahsN-~l~-~fP 446 (1081)
T KOG0618|consen 382 FKHLKVLHLSYN-RLNSFPASKLRK-----LEELEELNLSGN-KLTTLPD------TVANLGRLHTLRAHSN-QLL-SFP 446 (1081)
T ss_pred ccceeeeeeccc-ccccCCHHHHhc-----hHHhHHHhcccc-hhhhhhH------HHHhhhhhHHHhhcCC-cee-ech
Confidence 999999999986 466666655544 899999999994 6666643 2346788888888775 666 678
Q ss_pred C--CCCCcceEEEccccCccc-----cCCCCCCcCEEecCCCCC
Q 038637 925 K--RLLLLEKLVIKSCHRLLV-----TIQCLPTLTELHTKLCRR 961 (962)
Q Consensus 925 ~--~l~~L~~L~i~~c~~l~~-----~l~~l~~L~~L~l~~C~~ 961 (962)
+ .++.|+.++++ |.++.. ..+. |+|++|+++|.+.
T Consensus 447 e~~~l~qL~~lDlS-~N~L~~~~l~~~~p~-p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 447 ELAQLPQLKVLDLS-CNNLSEVTLPEALPS-PNLKYLDLSGNTR 488 (1081)
T ss_pred hhhhcCcceEEecc-cchhhhhhhhhhCCC-cccceeeccCCcc
Confidence 3 46778888875 444422 2222 6888888888764
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.55 E-value=1.5e-16 Score=179.39 Aligned_cols=301 Identities=25% Similarity=0.288 Sum_probs=153.4
Q ss_pred CCCcccEEEeCCCcCcccccccccCCCcCCeEeccCCCCccccccccccccCcEEeeCCCccccccchhcccCCCccEEe
Q 038637 613 HLPRLRVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLENCWELKKLCKDMGNLTKLRHLR 692 (962)
Q Consensus 613 ~l~~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 692 (962)
+.-+|++||+++| .+...|..|..+.+|+.|+++.|.|..+|.+++++.+|++|+|.+| .+..+|.++..+++|+.|+
T Consensus 43 ~~v~L~~l~lsnn-~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n-~l~~lP~~~~~lknl~~Ld 120 (1081)
T KOG0618|consen 43 KRVKLKSLDLSNN-QISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNN-RLQSLPASISELKNLQYLD 120 (1081)
T ss_pred heeeeEEeecccc-ccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccc-hhhcCchhHHhhhcccccc
Confidence 3334666666666 5666666666666666666666666666666666666666666666 6666666666666666666
Q ss_pred cCCCCCccccCCCCCCCCCCCccCCe------------------EeCCCCCCCcccccCcccCCCeEEEeccCCCCChhh
Q 038637 693 NSDAGLLEEMPKGFGKLTSLLTLGRF------------------VVGKDSGSGLRELKSLTHLQGTLRISKLENVEDVGD 754 (962)
Q Consensus 693 l~~~~~~~~~p~~i~~l~~L~~L~~~------------------~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~ 754 (962)
+++|. ...+|..+..++.+..+... ..+...+..+.+...+++ .+.+...+-
T Consensus 121 lS~N~-f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~---~ldLr~N~~------ 190 (1081)
T KOG0618|consen 121 LSFNH-FGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH---QLDLRYNEM------ 190 (1081)
T ss_pred cchhc-cCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe---eeecccchh------
Confidence 66665 34444444333332222110 000011112222222222 111111000
Q ss_pred hhhhcCcCCcCCCc----------eEEeccCCCCCCccchhhHHhhhccCCCCCCcCeEEEeecCCCCCCcCcCCCCCCC
Q 038637 755 ACEAQLNNKVNLRT----------LLLDWSARDVQNLDQCEFETRVLSMLKPHRDVQELTIRGYGGTKFPIWLGDSSFSK 824 (962)
Q Consensus 755 ~~~~~l~~~~~L~~----------L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~ 824 (962)
....+.++.+|+. +.+.+........+.+... ....-.-+.+|++++++.+.+..+|+|+. .+.+
T Consensus 191 -~~~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~--~~~~~p~p~nl~~~dis~n~l~~lp~wi~--~~~n 265 (1081)
T KOG0618|consen 191 -EVLDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLT--TLDVHPVPLNLQYLDISHNNLSNLPEWIG--ACAN 265 (1081)
T ss_pred -hhhhhhhccchhhhhhhhcccceEEecCcchheeeeccCcce--eeccccccccceeeecchhhhhcchHHHH--hccc
Confidence 0112222223333 3322221100001111111 11112335789999999999999999996 7888
Q ss_pred ccEEEEeCCCCCC----------------------CCC-CCCCCCCcCeEeecCCCCceEeCccccCC------------
Q 038637 825 LVNLKFGYCRMCT----------------------SLP-SVGQLPLLKHLKISGMDRVKSVGLEFYGS------------ 869 (962)
Q Consensus 825 L~~L~L~~~~~~~----------------------~l~-~l~~lp~L~~L~L~~~~~~~~~~~~~~~~------------ 869 (962)
|+.|...+|.++. .+| .++.+..|++|+|..|+ +...+..+...
T Consensus 266 le~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~-L~~lp~~~l~v~~~~l~~ln~s~ 344 (1081)
T KOG0618|consen 266 LEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN-LPSLPDNFLAVLNASLNTLNVSS 344 (1081)
T ss_pred ceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcc-ccccchHHHhhhhHHHHHHhhhh
Confidence 9998888887742 133 44558889999988754 33332211100
Q ss_pred --------CCCCCCCCcceeeccccccccccccccCCccccCcCCccceEeEccCCCccccCC----CCCCCcceEEEcc
Q 038637 870 --------SCSVPFPSLETLSFSDMREWEEWISCGAGQEVDEVFPKLRKLSLFNCYKLQGTLP----KRLLLLEKLVIKS 937 (962)
Q Consensus 870 --------~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~lp----~~l~~L~~L~i~~ 937 (962)
.....++.|+.|.+.++ .|++-.. .....|++|+.|++++| .|. .+| ..++.|++|+++|
T Consensus 345 n~l~~lp~~~e~~~~~Lq~LylanN-~Ltd~c~-----p~l~~~~hLKVLhLsyN-rL~-~fpas~~~kle~LeeL~LSG 416 (1081)
T KOG0618|consen 345 NKLSTLPSYEENNHAALQELYLANN-HLTDSCF-----PVLVNFKHLKVLHLSYN-RLN-SFPASKLRKLEELEELNLSG 416 (1081)
T ss_pred ccccccccccchhhHHHHHHHHhcC-cccccch-----hhhccccceeeeeeccc-ccc-cCCHHHHhchHHhHHHhccc
Confidence 01112445555555553 2322111 11334666777777665 565 566 3455666666665
Q ss_pred cc
Q 038637 938 CH 939 (962)
Q Consensus 938 c~ 939 (962)
+.
T Consensus 417 Nk 418 (1081)
T KOG0618|consen 417 NK 418 (1081)
T ss_pred ch
Confidence 43
No 14
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.53 E-value=3.3e-16 Score=160.41 Aligned_cols=273 Identities=20% Similarity=0.175 Sum_probs=168.2
Q ss_pred ccccccCCCCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCcccccccccCCCcCCeEeccCCCCcccc
Q 038637 576 RLESVCDVEHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILP 655 (962)
Q Consensus 576 ~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~~lp 655 (962)
.+++|..|+-|..|.+-.+. ...+|....+++++|.+|||..| .+.++|+.++.+.+|.+||+|+|.|+.+|
T Consensus 220 ~lPef~gcs~L~Elh~g~N~-------i~~lpae~~~~L~~l~vLDLRdN-klke~Pde~clLrsL~rLDlSNN~is~Lp 291 (565)
T KOG0472|consen 220 FLPEFPGCSLLKELHVGENQ-------IEMLPAEHLKHLNSLLVLDLRDN-KLKEVPDEICLLRSLERLDLSNNDISSLP 291 (565)
T ss_pred cCCCCCccHHHHHHHhcccH-------HHhhHHHHhcccccceeeecccc-ccccCchHHHHhhhhhhhcccCCccccCC
Confidence 45678888888888766542 35677888889999999999999 89999999999999999999999999999
Q ss_pred ccccccccCcEEeeCCCccccccchhc------------------------------------------ccCCCccEEec
Q 038637 656 ESINSLYNLHTILLENCWELKKLCKDM------------------------------------------GNLTKLRHLRN 693 (962)
Q Consensus 656 ~~i~~L~~L~~L~L~~~~~l~~lp~~i------------------------------------------~~L~~L~~L~l 693 (962)
.++++| +|+.|.+.|| .+..+-.++ ..+.+.+.|++
T Consensus 292 ~sLgnl-hL~~L~leGN-PlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~ 369 (565)
T KOG0472|consen 292 YSLGNL-HLKFLALEGN-PLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDV 369 (565)
T ss_pred cccccc-eeeehhhcCC-chHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcc
Confidence 999999 9999999998 333222222 12233444444
Q ss_pred CCCCCccccCCCCCCCCCCCccCCeEeCCCCCCCcccc----cCcccCCCeEEEeccCCCCChhhhhhhcCcCCcCCCce
Q 038637 694 SDAGLLEEMPKGFGKLTSLLTLGRFVVGKDSGSGLREL----KSLTHLQGTLRISKLENVEDVGDACEAQLNNKVNLRTL 769 (962)
Q Consensus 694 ~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l----~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L 769 (962)
++-. +..+|..+..-..=+. ...-..+...+.++ ..+..+...+..+ .....-.+..++.+++|..|
T Consensus 370 s~~q-lt~VPdEVfea~~~~~---Vt~VnfskNqL~elPk~L~~lkelvT~l~ls-----nn~isfv~~~l~~l~kLt~L 440 (565)
T KOG0472|consen 370 SDKQ-LTLVPDEVFEAAKSEI---VTSVNFSKNQLCELPKRLVELKELVTDLVLS-----NNKISFVPLELSQLQKLTFL 440 (565)
T ss_pred cccc-cccCCHHHHHHhhhcc---eEEEecccchHhhhhhhhHHHHHHHHHHHhh-----cCccccchHHHHhhhcceee
Confidence 4433 3334432211110000 00001122222222 2222111000000 01112234456677788888
Q ss_pred EEeccCCCCCCccchhhHHhhhccCCCCCCcCeEEEeecCCCCCCcCcCCCCCCCccEEEEeCCCCCCCCC-CCCCCCCc
Q 038637 770 LLDWSARDVQNLDQCEFETRVLSMLKPHRDVQELTIRGYGGTKFPIWLGDSSFSKLVNLKFGYCRMCTSLP-SVGQLPLL 848 (962)
Q Consensus 770 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L 848 (962)
+++++. -.++|..+.....|+.|+|+.|.+..+|..+- .+..|+.+-.++|+....-| .++++.+|
T Consensus 441 ~L~NN~-----------Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y--~lq~lEtllas~nqi~~vd~~~l~nm~nL 507 (565)
T KOG0472|consen 441 DLSNNL-----------LNDLPEEMGSLVRLQTLNLSFNRFRMLPECLY--ELQTLETLLASNNQIGSVDPSGLKNMRNL 507 (565)
T ss_pred ecccch-----------hhhcchhhhhhhhhheecccccccccchHHHh--hHHHHHHHHhccccccccChHHhhhhhhc
Confidence 887765 23556666666778889998888888887663 33344444444454433223 36777888
Q ss_pred CeEeecCCCCceEeCccccCCCCCCCCCCcceeeccccc
Q 038637 849 KHLKISGMDRVKSVGLEFYGSSCSVPFPSLETLSFSDMR 887 (962)
Q Consensus 849 ~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~ 887 (962)
.+|++.+| .+..+|..... +.+|+.|.++++|
T Consensus 508 ~tLDL~nN-dlq~IPp~Lgn------mtnL~hLeL~gNp 539 (565)
T KOG0472|consen 508 TTLDLQNN-DLQQIPPILGN------MTNLRHLELDGNP 539 (565)
T ss_pred ceeccCCC-chhhCChhhcc------ccceeEEEecCCc
Confidence 88888754 46666665543 7788888888765
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.52 E-value=6.5e-14 Score=164.05 Aligned_cols=250 Identities=22% Similarity=0.184 Sum_probs=129.5
Q ss_pred ccEEEeCCCcCcccccccccCCCcCCeEeccCCCCccccccccccccCcEEeeCCCccccccchhcccCCCccEEecCCC
Q 038637 617 LRVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLENCWELKKLCKDMGNLTKLRHLRNSDA 696 (962)
Q Consensus 617 Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~ 696 (962)
-.+|+|+++ .+..+|..+. .+|+.|++++|.++.+|.. +++|++|++++| .+..+|.. .++|+.|++.+|
T Consensus 203 ~~~LdLs~~-~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~N 272 (788)
T PRK15387 203 NAVLNVGES-GLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGN-QLTSLPVL---PPGLLELSIFSN 272 (788)
T ss_pred CcEEEcCCC-CCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCC-ccCcccCc---ccccceeeccCC
Confidence 445666665 5555665554 2566666666666666542 355666666665 55555532 345566666655
Q ss_pred CCccccCCCCCCCCCCCccCCeEeCCCCCCCcccccC-cccCCCeEEEeccCCCCChhhhhhhcCcCCcCCCceEEeccC
Q 038637 697 GLLEEMPKGFGKLTSLLTLGRFVVGKDSGSGLRELKS-LTHLQGTLRISKLENVEDVGDACEAQLNNKVNLRTLLLDWSA 775 (962)
Q Consensus 697 ~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~-L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 775 (962)
. +..+|.... +|..|.... ..+..++. ++.|+ .|.+.+. .+.. ++. ...+|+.|.+.++.
T Consensus 273 ~-L~~Lp~lp~---~L~~L~Ls~------N~Lt~LP~~p~~L~-~LdLS~N-~L~~----Lp~---lp~~L~~L~Ls~N~ 333 (788)
T PRK15387 273 P-LTHLPALPS---GLCKLWIFG------NQLTSLPVLPPGLQ-ELSVSDN-QLAS----LPA---LPSELCKLWAYNNQ 333 (788)
T ss_pred c-hhhhhhchh---hcCEEECcC------Cccccccccccccc-eeECCCC-cccc----CCC---CcccccccccccCc
Confidence 4 444443222 222221100 01111110 11222 2222211 0000 000 01245556555544
Q ss_pred CCCCCccchhhHHhhhccCCCCCCcCeEEEeecCCCCCCcCcCCCCCCCccEEEEeCCCCCCCCCCCCCCCCcCeEeecC
Q 038637 776 RDVQNLDQCEFETRVLSMLKPHRDVQELTIRGYGGTKFPIWLGDSSFSKLVNLKFGYCRMCTSLPSVGQLPLLKHLKISG 855 (962)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~lp~L~~L~L~~ 855 (962)
+. .++. .+.+|+.|++++|.+..+|.. .++|+.|++++|.+. .+|.+ .++|+.|++++
T Consensus 334 L~-----------~LP~---lp~~Lq~LdLS~N~Ls~LP~l-----p~~L~~L~Ls~N~L~-~LP~l--~~~L~~LdLs~ 391 (788)
T PRK15387 334 LT-----------SLPT---LPSGLQELSVSDNQLASLPTL-----PSELYKLWAYNNRLT-SLPAL--PSGLKELIVSG 391 (788)
T ss_pred cc-----------cccc---cccccceEecCCCccCCCCCC-----Ccccceehhhccccc-cCccc--ccccceEEecC
Confidence 11 1111 124788888888877777752 346777788777655 35532 25678888877
Q ss_pred CCCceEeCccccCCCCCCCCCCcceeeccccccccccccccCCccccCcCCccceEeEccCCCccccCCC---CCCCcce
Q 038637 856 MDRVKSVGLEFYGSSCSVPFPSLETLSFSDMREWEEWISCGAGQEVDEVFPKLRKLSLFNCYKLQGTLPK---RLLLLEK 932 (962)
Q Consensus 856 ~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~lp~---~l~~L~~ 932 (962)
|. +..++.. +++|+.|+++++ .+..++. .+++|+.|++++| +|+ .+|. .+++|+.
T Consensus 392 N~-Lt~LP~l---------~s~L~~LdLS~N-~LssIP~---------l~~~L~~L~Ls~N-qLt-~LP~sl~~L~~L~~ 449 (788)
T PRK15387 392 NR-LTSLPVL---------PSELKELMVSGN-RLTSLPM---------LPSGLLSLSVYRN-QLT-RLPESLIHLSSETT 449 (788)
T ss_pred Cc-ccCCCCc---------ccCCCEEEccCC-cCCCCCc---------chhhhhhhhhccC-ccc-ccChHHhhccCCCe
Confidence 64 3333321 457888888875 3544422 2346777888876 677 6774 3567777
Q ss_pred EEEcccc
Q 038637 933 LVIKSCH 939 (962)
Q Consensus 933 L~i~~c~ 939 (962)
|++++++
T Consensus 450 LdLs~N~ 456 (788)
T PRK15387 450 VNLEGNP 456 (788)
T ss_pred EECCCCC
Confidence 8887765
No 16
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.41 E-value=9.4e-14 Score=166.51 Aligned_cols=326 Identities=27% Similarity=0.324 Sum_probs=195.1
Q ss_pred cccCCCCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcC-cccccc-cccCCCcCCeEeccCC-CCcccc
Q 038637 579 SVCDVEHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCN-IFNLPN-EIGNLKHLRCLNLSRT-RIQILP 655 (962)
Q Consensus 579 ~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~-~~~lp~-~i~~L~~Lr~L~Ls~~-~i~~lp 655 (962)
...+....|...+.++.. ..++. -..++.|++|-+.+|.. +..++. .|..|++|++|||++| .+.+||
T Consensus 518 ~~~~~~~~rr~s~~~~~~-------~~~~~--~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP 588 (889)
T KOG4658|consen 518 QVKSWNSVRRMSLMNNKI-------EHIAG--SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLP 588 (889)
T ss_pred cccchhheeEEEEeccch-------hhccC--CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCC
Confidence 344455666666555431 11111 13456799999998842 556654 4778999999999975 467999
Q ss_pred ccccccccCcEEeeCCCccccccchhcccCCCccEEecCCCCCccccCCCCCCCCCCCccCCeEeC-CCCCCCcccccCc
Q 038637 656 ESINSLYNLHTILLENCWELKKLCKDMGNLTKLRHLRNSDAGLLEEMPKGFGKLTSLLTLGRFVVG-KDSGSGLRELKSL 734 (962)
Q Consensus 656 ~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~-~~~~~~~~~l~~L 734 (962)
++|+.|.+|++|+++++ .+..+|.++.+|++|.||++..+..+..+|..+..|.+|++|..+... ..+...+.++.+|
T Consensus 589 ~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~L 667 (889)
T KOG4658|consen 589 SSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENL 667 (889)
T ss_pred hHHhhhhhhhcccccCC-CccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcc
Confidence 99999999999999999 899999999999999999999988666776666679999999776654 3334455666666
Q ss_pred ccCCCeEEEeccCCCCChhhhhhhcCcCCcCCCceEEeccCCCCCCccchhhHHhhhccCCCCCCcCeEEEeecCCCCCC
Q 038637 735 THLQGTLRISKLENVEDVGDACEAQLNNKVNLRTLLLDWSARDVQNLDQCEFETRVLSMLKPHRDVQELTIRGYGGTKFP 814 (962)
Q Consensus 735 ~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p 814 (962)
.+|+ .+.+..... .....+..+..|.++...-.. .. .........+..+++|+.|.+.++.+...+
T Consensus 668 e~L~-~ls~~~~s~------~~~e~l~~~~~L~~~~~~l~~------~~-~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~ 733 (889)
T KOG4658|consen 668 EHLE-NLSITISSV------LLLEDLLGMTRLRSLLQSLSI------EG-CSKRTLISSLGSLGNLEELSILDCGISEIV 733 (889)
T ss_pred cchh-hheeecchh------HhHhhhhhhHHHHHHhHhhhh------cc-cccceeecccccccCcceEEEEcCCCchhh
Confidence 6665 454432111 111122233333332211110 00 001223344566677777777777654322
Q ss_pred -cCcCC---CC-CCCccEEEEeCCCCCCCCCCCCCCCCcCeEeecCCCCceEeCccccCCCCCCCCCCcceeeccccccc
Q 038637 815 -IWLGD---SS-FSKLVNLKFGYCRMCTSLPSVGQLPLLKHLKISGMDRVKSVGLEFYGSSCSVPFPSLETLSFSDMREW 889 (962)
Q Consensus 815 -~~~~~---~~-l~~L~~L~L~~~~~~~~l~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l 889 (962)
.|... .. ++++..+.+.+|.....+.+..-.|+|++|.+..|..++.+ .|.++.+....
T Consensus 734 ~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~------------i~~~k~~~~l~---- 797 (889)
T KOG4658|consen 734 IEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDI------------IPKLKALLELK---- 797 (889)
T ss_pred cccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccC------------CCHHHHhhhcc----
Confidence 12211 11 44566666666665555545555667777777776655544 22222211100
Q ss_pred cccccccCCccccCcCCccceE-eEc---cCCCccccCCCCCCCcceEEEccccCccccCCCCCCcCEEecCCC
Q 038637 890 EEWISCGAGQEVDEVFPKLRKL-SLF---NCYKLQGTLPKRLLLLEKLVIKSCHRLLVTIQCLPTLTELHTKLC 959 (962)
Q Consensus 890 ~~~~~~~~~~~~~~~~p~L~~L-~l~---~c~~L~~~lp~~l~~L~~L~i~~c~~l~~~l~~l~~L~~L~l~~C 959 (962)
.. ...|+++..+ .+. +.+++. ..|-..+.|+.+.+..|+++ ..+|.+..+.+.+|
T Consensus 798 -~~---------i~~f~~~~~l~~~~~l~~l~~i~-~~~l~~~~l~~~~ve~~p~l----~~~P~~~~~~i~~~ 856 (889)
T KOG4658|consen 798 -EL---------ILPFNKLEGLRMLCSLGGLPQLY-WLPLSFLKLEELIVEECPKL----GKLPLLSTLTIVGC 856 (889)
T ss_pred -cE---------EecccccccceeeecCCCCceeE-ecccCccchhheehhcCccc----ccCccccccceecc
Confidence 00 1123333333 233 333333 34544566889999999885 45677777777776
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.40 E-value=4.4e-13 Score=158.36 Aligned_cols=241 Identities=18% Similarity=0.240 Sum_probs=150.4
Q ss_pred cccEEEeCCCcCcccccccccCCCcCCeEeccCCCCccccccccccccCcEEeeCCCccccccchhcccCCCccEEecCC
Q 038637 616 RLRVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLENCWELKKLCKDMGNLTKLRHLRNSD 695 (962)
Q Consensus 616 ~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~ 695 (962)
+..+|+++++ .+..+|..+. .+|+.|+|++|.++.+|..+. .+|++|++++| .+..+|..+. .+|+.|++++
T Consensus 179 ~~~~L~L~~~-~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N-~LtsLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 179 NKTELRLKIL-GLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSN-QLTSIPATLP--DTIQEMELSI 250 (754)
T ss_pred CceEEEeCCC-CcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCC-ccccCChhhh--ccccEEECcC
Confidence 4566777776 5666776553 467777777777777776654 47777777776 5666665442 4677777777
Q ss_pred CCCccccCCCCCCCCCCCccCCeEeCCCCCCCcccccCcccCCCeEEEeccCCCCChhhhhhhcCcCCcCCCceEEeccC
Q 038637 696 AGLLEEMPKGFGKLTSLLTLGRFVVGKDSGSGLRELKSLTHLQGTLRISKLENVEDVGDACEAQLNNKVNLRTLLLDWSA 775 (962)
Q Consensus 696 ~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 775 (962)
|. +..+|..+. ++|+.|... . . ++.. ++..+. .+|+.|+++++.
T Consensus 251 N~-L~~LP~~l~--s~L~~L~Ls---~---N------~L~~-------------------LP~~l~--~sL~~L~Ls~N~ 294 (754)
T PRK15370 251 NR-ITELPERLP--SALQSLDLF---H---N------KISC-------------------LPENLP--EELRYLSVYDNS 294 (754)
T ss_pred Cc-cCcCChhHh--CCCCEEECc---C---C------ccCc-------------------cccccC--CCCcEEECCCCc
Confidence 76 445665442 234433110 0 0 0000 000111 256666666554
Q ss_pred CCCCCccchhhHHhhhccCCCCCCcCeEEEeecCCCCCCcCcCCCCCCCccEEEEeCCCCCCCCC-CCCCCCCcCeEeec
Q 038637 776 RDVQNLDQCEFETRVLSMLKPHRDVQELTIRGYGGTKFPIWLGDSSFSKLVNLKFGYCRMCTSLP-SVGQLPLLKHLKIS 854 (962)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L~~L~L~ 854 (962)
+. .++..+ +++|+.|++++|.+..+|..+ .++|+.|++++|.+.. +| .+ .++|+.|+++
T Consensus 295 Lt-----------~LP~~l--p~sL~~L~Ls~N~Lt~LP~~l----~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls 354 (754)
T PRK15370 295 IR-----------TLPAHL--PSGITHLNVQSNSLTALPETL----PPGLKTLEAGENALTS-LPASL--PPELQVLDVS 354 (754)
T ss_pred cc-----------cCcccc--hhhHHHHHhcCCccccCCccc----cccceeccccCCcccc-CChhh--cCcccEEECC
Confidence 11 112212 247899999999888888654 3689999999998764 55 23 3799999999
Q ss_pred CCCCceEeCccccCCCCCCCCCCcceeeccccccccccccccCCccccCcCCccceEeEccCCCccccCCCC-------C
Q 038637 855 GMDRVKSVGLEFYGSSCSVPFPSLETLSFSDMREWEEWISCGAGQEVDEVFPKLRKLSLFNCYKLQGTLPKR-------L 927 (962)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~lp~~-------l 927 (962)
+|. +..++..+ .++|+.|+|++| .+..++. ...++|+.|++++| +|+ .+|.. +
T Consensus 355 ~N~-L~~LP~~l--------p~~L~~LdLs~N-~Lt~LP~--------~l~~sL~~LdLs~N-~L~-~LP~sl~~~~~~~ 414 (754)
T PRK15370 355 KNQ-ITVLPETL--------PPTITTLDVSRN-ALTNLPE--------NLPAALQIMQASRN-NLV-RLPESLPHFRGEG 414 (754)
T ss_pred CCC-CCcCChhh--------cCCcCEEECCCC-cCCCCCH--------hHHHHHHHHhhccC-Ccc-cCchhHHHHhhcC
Confidence 875 44454322 468999999986 4555432 12347999999997 787 67753 3
Q ss_pred CCcceEEEccccC
Q 038637 928 LLLEKLVIKSCHR 940 (962)
Q Consensus 928 ~~L~~L~i~~c~~ 940 (962)
+++..|.+.+++-
T Consensus 415 ~~l~~L~L~~Npl 427 (754)
T PRK15370 415 PQPTRIIVEYNPF 427 (754)
T ss_pred CCccEEEeeCCCc
Confidence 6678888887763
No 18
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.40 E-value=1.6e-11 Score=155.16 Aligned_cols=292 Identities=16% Similarity=0.193 Sum_probs=179.9
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeC-CCCCHHHHHHHHH
Q 038637 202 EVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVS-EDFDVFRVTKSIL 280 (962)
Q Consensus 202 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~-~~~~~~~~~~~il 280 (962)
.+|-|+. |.+.|... ...+++.|+|++|.||||++...... ++.++|+++. ...+...+...++
T Consensus 15 ~~~~R~r----l~~~l~~~-----~~~~~~~v~apaG~GKTtl~~~~~~~------~~~~~w~~l~~~d~~~~~f~~~l~ 79 (903)
T PRK04841 15 NTVVRER----LLAKLSGA-----NNYRLVLVTSPAGYGKTTLISQWAAG------KNNLGWYSLDESDNQPERFASYLI 79 (903)
T ss_pred ccCcchH----HHHHHhcc-----cCCCeEEEECCCCCCHHHHHHHHHHh------CCCeEEEecCcccCCHHHHHHHHH
Confidence 4566665 44444322 25789999999999999999988752 2368899996 4456677777777
Q ss_pred HHhccCCCC------------CCccHHHHHHHHHhHhC--CceEEEEEecCCCCCccchh-hccCCCCCCCCCcEEEEEe
Q 038637 281 KSIANDQSN------------NDDDLNLLQEKLKKQLS--GNKFLLVLDDVWNKNYNYWS-ILSCPFGAGAPGSKIVVTT 345 (962)
Q Consensus 281 ~~l~~~~~~------------~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~~~~~-~l~~~l~~~~~gs~ilvTt 345 (962)
..+...... ...+...+...+-..+. +.+++|||||+..-+..... .+...+.....+.++||||
T Consensus 80 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~s 159 (903)
T PRK04841 80 AALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLS 159 (903)
T ss_pred HHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEe
Confidence 777422110 11222233333333332 67899999999664322222 2222222334567888999
Q ss_pred cChhh---HhhhCCCCcccCC----CCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHHHHHHhhhcCC
Q 038637 346 RNLDV---ANLTRAYPKYGLK----ELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAAKTLGGLLRGK 418 (962)
Q Consensus 346 R~~~v---~~~~~~~~~~~l~----~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~~L~~~ 418 (962)
|...- ..........++. +|+.+|+.++|....- .+-..+.+.+|.+.|+|.|+++..++..+...
T Consensus 160 R~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~-------~~~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~ 232 (903)
T PRK04841 160 RNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLS-------SPIEAAESSRLCDDVEGWATALQLIALSARQN 232 (903)
T ss_pred CCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccC-------CCCCHHHHHHHHHHhCChHHHHHHHHHHHhhC
Confidence 98421 1111112234455 9999999999976531 11224567889999999999999998777544
Q ss_pred CChhHHHHHHhhhhhcccc-cccCchhHHHh-hccCCchhhHhHHhhhcCCCCCceeCHHHHHHHHHHcCCcccccCCCc
Q 038637 419 DDLTDWEFVLNTDIWKLQE-ENYGIIPALRV-SYHFLPSQLKQCFAYCSLFPKDYEFQEEEIILLWTAEGFLDQEYNGRK 496 (962)
Q Consensus 419 ~~~~~w~~~~~~~~~~~~~-~~~~i~~~l~~-sy~~L~~~~k~cfl~~~~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~ 496 (962)
+.... ... +.+.. ....+...+.- .++.||++.+..+...|+++ .++.+.+- .+..
T Consensus 233 ~~~~~--~~~----~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~l~~------~l~~------- 290 (903)
T PRK04841 233 NSSLH--DSA----RRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDALIV------RVTG------- 290 (903)
T ss_pred CCchh--hhh----HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHHHHH------HHcC-------
Confidence 22100 000 11111 11234444333 47899999999999999996 34433221 1111
Q ss_pred HHHHHHHHHHHHhhCCCccc-ccCCCCcEEEcchhhHHHHHhh
Q 038637 497 MEDLGREFVRELHSRSLFQQ-SSRDASRFVMHDLINDLARWAA 538 (962)
Q Consensus 497 ~e~~~~~~l~~L~~r~ll~~-~~~~~~~~~mHdli~d~a~~~~ 538 (962)
.+.+...+++|.+++++.. .+.+...|+.|++++++++...
T Consensus 291 -~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 291 -EENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred -CCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 1224678999999999753 3333457899999999998765
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.34 E-value=5.6e-12 Score=147.97 Aligned_cols=225 Identities=20% Similarity=0.152 Sum_probs=141.6
Q ss_pred CCcccEEEeCCCcCcccccccccCCCcCCeEeccCCCCccccccccccccCcEEeeCCCccccccchhcccCCCccEEec
Q 038637 614 LPRLRVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLENCWELKKLCKDMGNLTKLRHLRN 693 (962)
Q Consensus 614 l~~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 693 (962)
+++|++|+|++| .+..+|.. ..+|+.|+|++|.++.+|... .+|+.|++++| .+..+|. .+++|++|++
T Consensus 241 p~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~lp---~~L~~L~Ls~N-~Lt~LP~---~p~~L~~LdL 309 (788)
T PRK15387 241 PPELRTLEVSGN-QLTSLPVL---PPGLLELSIFSNPLTHLPALP---SGLCKLWIFGN-QLTSLPV---LPPGLQELSV 309 (788)
T ss_pred CCCCcEEEecCC-ccCcccCc---ccccceeeccCCchhhhhhch---hhcCEEECcCC-ccccccc---cccccceeEC
Confidence 466777777777 56666642 356777777777777766532 45667777777 5666664 2466777777
Q ss_pred CCCCCccccCCCCCCCCCCCccCCeEeCCCCCCCcccccCcccCCCeEEEeccCCCCChhhhhhhcCcCCcCCCceEEec
Q 038637 694 SDAGLLEEMPKGFGKLTSLLTLGRFVVGKDSGSGLRELKSLTHLQGTLRISKLENVEDVGDACEAQLNNKVNLRTLLLDW 773 (962)
Q Consensus 694 ~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 773 (962)
++|. +..+|..... |+.|.... ..+ .. ++. ...+|+.|++++
T Consensus 310 S~N~-L~~Lp~lp~~---L~~L~Ls~------N~L------------------~~-------LP~---lp~~Lq~LdLS~ 351 (788)
T PRK15387 310 SDNQ-LASLPALPSE---LCKLWAYN------NQL------------------TS-------LPT---LPSGLQELSVSD 351 (788)
T ss_pred CCCc-cccCCCCccc---cccccccc------Ccc------------------cc-------ccc---cccccceEecCC
Confidence 7775 4445542222 22221100 000 00 000 013688888887
Q ss_pred cCCCCCCccchhhHHhhhccCCCCCCcCeEEEeecCCCCCCcCcCCCCCCCccEEEEeCCCCCCCCCCCCCCCCcCeEee
Q 038637 774 SARDVQNLDQCEFETRVLSMLKPHRDVQELTIRGYGGTKFPIWLGDSSFSKLVNLKFGYCRMCTSLPSVGQLPLLKHLKI 853 (962)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~lp~L~~L~L 853 (962)
+.+. .++. .+++|+.|.+++|.+..+|.. ..+|+.|+|++|.+.. +|.. .++|+.|++
T Consensus 352 N~Ls-----------~LP~---lp~~L~~L~Ls~N~L~~LP~l-----~~~L~~LdLs~N~Lt~-LP~l--~s~L~~LdL 409 (788)
T PRK15387 352 NQLA-----------SLPT---LPSELYKLWAYNNRLTSLPAL-----PSGLKELIVSGNRLTS-LPVL--PSELKELMV 409 (788)
T ss_pred CccC-----------CCCC---CCcccceehhhccccccCccc-----ccccceEEecCCcccC-CCCc--ccCCCEEEc
Confidence 6621 1221 246789999999998888863 3579999999998764 6643 368999999
Q ss_pred cCCCCceEeCccccCCCCCCCCCCcceeeccccccccccccccCCccccCcCCccceEeEccCCCccccCCCCC
Q 038637 854 SGMDRVKSVGLEFYGSSCSVPFPSLETLSFSDMREWEEWISCGAGQEVDEVFPKLRKLSLFNCYKLQGTLPKRL 927 (962)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~lp~~l 927 (962)
++|. +..++.. +.+|+.|+++++ +++.++. ..+.+++|+.|++++| .|++..|..+
T Consensus 410 S~N~-LssIP~l---------~~~L~~L~Ls~N-qLt~LP~------sl~~L~~L~~LdLs~N-~Ls~~~~~~L 465 (788)
T PRK15387 410 SGNR-LTSLPML---------PSGLLSLSVYRN-QLTRLPE------SLIHLSSETTVNLEGN-PLSERTLQAL 465 (788)
T ss_pred cCCc-CCCCCcc---------hhhhhhhhhccC-cccccCh------HHhhccCCCeEECCCC-CCCchHHHHH
Confidence 9875 5545421 457889999884 4655432 2456899999999998 6776555433
No 20
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.34 E-value=1.8e-10 Score=130.32 Aligned_cols=302 Identities=15% Similarity=0.110 Sum_probs=177.9
Q ss_pred cCCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHH
Q 038637 199 NEAEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKS 278 (962)
Q Consensus 199 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~ 278 (962)
.+..++||++++++|...+..... ......+.|+|++|+|||++++.++++.......-..+++++....+...++..
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~--~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~ 105 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALR--GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSE 105 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhC--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHH
Confidence 345799999999999999854321 224456789999999999999999985432222234567777777788899999
Q ss_pred HHHHhccC-CCCCCccHHHHHHHHHhHhC--CceEEEEEecCCCCC----ccchhhccCCCCCCCCCcE--EEEEecChh
Q 038637 279 ILKSIAND-QSNNDDDLNLLQEKLKKQLS--GNKFLLVLDDVWNKN----YNYWSILSCPFGAGAPGSK--IVVTTRNLD 349 (962)
Q Consensus 279 il~~l~~~-~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~----~~~~~~l~~~l~~~~~gs~--ilvTtR~~~ 349 (962)
++.++... ......+.+.+.+.+.+.+. ++..+||||+++.-. .+.+..+...+.. ..+++ +|.++....
T Consensus 106 i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~~ 184 (394)
T PRK00411 106 IARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDLT 184 (394)
T ss_pred HHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCcc
Confidence 99999762 22123345666777777765 467899999996532 1222233222221 12333 566666544
Q ss_pred hHhhhC-------CCCcccCCCCCHHHHHHHHHHhhcCC--CCCCCCcchHHHHHHHHHhcCCChHHHHHHHhhh--c--
Q 038637 350 VANLTR-------AYPKYGLKELSDDDCLRVVIQHSLGA--TGFSTNQSLKDVGEKIAKKCKGLPLAAKTLGGLL--R-- 416 (962)
Q Consensus 350 v~~~~~-------~~~~~~l~~L~~~~~~~Lf~~~a~~~--~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~~L--~-- 416 (962)
+..... ....+.+.+++.++..+++..++-.. .+...+..++.+++......|..+.|+.++-.+. +
T Consensus 185 ~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~ 264 (394)
T PRK00411 185 FLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAER 264 (394)
T ss_pred hhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 332211 12457899999999999998876321 1112222333334433333466778877765432 1
Q ss_pred -CC--CChhHHHHHHhhhhhcccccccCchhHHHhhccCCchhhHhHHhhhcCC-CC-CceeCHHHHHHH--HHHcCCcc
Q 038637 417 -GK--DDLTDWEFVLNTDIWKLQEENYGIIPALRVSYHFLPSQLKQCFAYCSLF-PK-DYEFQEEEIILL--WTAEGFLD 489 (962)
Q Consensus 417 -~~--~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~~~f-p~-~~~i~~~~li~~--W~aeg~i~ 489 (962)
+. -+.+....+.+.. -.....-.+..||.+.|..+..++.. .. ...+....+... .+++.+-.
T Consensus 265 ~~~~~I~~~~v~~a~~~~----------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~ 334 (394)
T PRK00411 265 EGSRKVTEEDVRKAYEKS----------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGY 334 (394)
T ss_pred cCCCCcCHHHHHHHHHHH----------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCC
Confidence 11 1344444444432 11233456789999988877665532 11 133555555432 23322110
Q ss_pred cccCCCcHHHHHHHHHHHHhhCCCcccc
Q 038637 490 QEYNGRKMEDLGREFVRELHSRSLFQQS 517 (962)
Q Consensus 490 ~~~~~~~~e~~~~~~l~~L~~r~ll~~~ 517 (962)
..........|+++|...|+|+..
T Consensus 335 ----~~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 335 ----EPRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred ----CcCcHHHHHHHHHHHHhcCCeEEE
Confidence 011234567799999999999754
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.30 E-value=4.7e-14 Score=127.98 Aligned_cols=165 Identities=23% Similarity=0.331 Sum_probs=93.1
Q ss_pred cCCCcCCeEeccCCCCccccccccccccCcEEeeCCCccccccchhcccCCCccEEecCCCCCccccCCCCCCCCCCCcc
Q 038637 636 GNLKHLRCLNLSRTRIQILPESINSLYNLHTILLENCWELKKLCKDMGNLTKLRHLRNSDAGLLEEMPKGFGKLTSLLTL 715 (962)
Q Consensus 636 ~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 715 (962)
..+.+...|.||+|+++.+|+.|..|.+|+.|++.+| .++++|..+..|++|++|+++-|. +..+|.+||.++.|+.|
T Consensus 30 f~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~levl 107 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALEVL 107 (264)
T ss_pred cchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhh-hhcCccccCCCchhhhh
Confidence 3445555566666666666666666666666666666 666666666666666666666554 55666666666666655
Q ss_pred CCeEeCCCCCCCcccccCcccCCCeEEEeccCCCCChhhhhhhcCcCCcCCCceEEeccCCCCCCccchhhHHhhhccCC
Q 038637 716 GRFVVGKDSGSGLRELKSLTHLQGTLRISKLENVEDVGDACEAQLNNKVNLRTLLLDWSARDVQNLDQCEFETRVLSMLK 795 (962)
Q Consensus 716 ~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~ 795 (962)
..-+.+ |. ...++..+-.+..|+.|.+..++ .+.++..++
T Consensus 108 dltynn---------------l~--------------e~~lpgnff~m~tlralyl~dnd-----------fe~lp~dvg 147 (264)
T KOG0617|consen 108 DLTYNN---------------LN--------------ENSLPGNFFYMTTLRALYLGDND-----------FEILPPDVG 147 (264)
T ss_pred hccccc---------------cc--------------cccCCcchhHHHHHHHHHhcCCC-----------cccCChhhh
Confidence 322111 00 00111111122233333333332 124455566
Q ss_pred CCCCcCeEEEeecCCCCCCcCcCCCCCCCccEEEEeCCCCCCCCCCCCC
Q 038637 796 PHRDVQELTIRGYGGTKFPIWLGDSSFSKLVNLKFGYCRMCTSLPSVGQ 844 (962)
Q Consensus 796 ~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~ 844 (962)
.+.+|+.|.+..|...++|..++ .+..|++|++.+|.+.--.|.+++
T Consensus 148 ~lt~lqil~lrdndll~lpkeig--~lt~lrelhiqgnrl~vlppel~~ 194 (264)
T KOG0617|consen 148 KLTNLQILSLRDNDLLSLPKEIG--DLTRLRELHIQGNRLTVLPPELAN 194 (264)
T ss_pred hhcceeEEeeccCchhhCcHHHH--HHHHHHHHhcccceeeecChhhhh
Confidence 67777777777777777777775 677777777777776543334443
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.29 E-value=5.5e-12 Score=149.18 Aligned_cols=227 Identities=14% Similarity=0.174 Sum_probs=144.1
Q ss_pred CcccEEEeCCCcCcccccccccCCCcCCeEeccCCCCccccccccccccCcEEeeCCCccccccchhcccCCCccEEecC
Q 038637 615 PRLRVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLENCWELKKLCKDMGNLTKLRHLRNS 694 (962)
Q Consensus 615 ~~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 694 (962)
+.|+.|+|++| .+..+|..+. .+|++|+|++|.++.+|..+. .+|+.|+|++| .+..+|..+. .+|+.|+++
T Consensus 199 ~~L~~L~Ls~N-~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N-~L~~LP~~l~--s~L~~L~Ls 270 (754)
T PRK15370 199 EQITTLILDNN-ELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSIN-RITELPERLP--SALQSLDLF 270 (754)
T ss_pred cCCcEEEecCC-CCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCC-ccCcCChhHh--CCCCEEECc
Confidence 35778888877 6777776554 478888888888887777554 46788888887 5667776653 477888887
Q ss_pred CCCCccccCCCCCCCCCCCccCCeEeCCCCCCCcccccCcccCCCeEEEeccCCCCChhhhhhhcCcCCcCCCceEEecc
Q 038637 695 DAGLLEEMPKGFGKLTSLLTLGRFVVGKDSGSGLRELKSLTHLQGTLRISKLENVEDVGDACEAQLNNKVNLRTLLLDWS 774 (962)
Q Consensus 695 ~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 774 (962)
+|. +..+|..+. ++|+.|.... . +++.+- ..+ ..+|+.|.+.++
T Consensus 271 ~N~-L~~LP~~l~--~sL~~L~Ls~------N------~Lt~LP-------------------~~l--p~sL~~L~Ls~N 314 (754)
T PRK15370 271 HNK-ISCLPENLP--EELRYLSVYD------N------SIRTLP-------------------AHL--PSGITHLNVQSN 314 (754)
T ss_pred CCc-cCccccccC--CCCcEEECCC------C------ccccCc-------------------ccc--hhhHHHHHhcCC
Confidence 776 556665543 2444442110 0 010000 000 124555666655
Q ss_pred CCCCCCccchhhHHhhhccCCCCCCcCeEEEeecCCCCCCcCcCCCCCCCccEEEEeCCCCCCCCC-CCCCCCCcCeEee
Q 038637 775 ARDVQNLDQCEFETRVLSMLKPHRDVQELTIRGYGGTKFPIWLGDSSFSKLVNLKFGYCRMCTSLP-SVGQLPLLKHLKI 853 (962)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L~~L~L 853 (962)
... .++.. .+++|+.|.+++|.+..+|..+ .++|+.|+|++|.+. .+| .+ .++|+.|+|
T Consensus 315 ~Lt-----------~LP~~--l~~sL~~L~Ls~N~Lt~LP~~l----~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdL 374 (754)
T PRK15370 315 SLT-----------ALPET--LPPGLKTLEAGENALTSLPASL----PPELQVLDVSKNQIT-VLPETL--PPTITTLDV 374 (754)
T ss_pred ccc-----------cCCcc--ccccceeccccCCccccCChhh----cCcccEEECCCCCCC-cCChhh--cCCcCEEEC
Confidence 411 11221 2368999999999999998765 368999999999876 355 23 369999999
Q ss_pred cCCCCceEeCccccCCCCCCCCCCcceeeccccccccccccccCCccccCcCCccceEeEccCC
Q 038637 854 SGMDRVKSVGLEFYGSSCSVPFPSLETLSFSDMREWEEWISCGAGQEVDEVFPKLRKLSLFNCY 917 (962)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~c~ 917 (962)
++|. +..++..+ .++|+.|++++| ++..++... ....+.+|++..|++.+||
T Consensus 375 s~N~-Lt~LP~~l--------~~sL~~LdLs~N-~L~~LP~sl--~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 375 SRNA-LTNLPENL--------PAALQIMQASRN-NLVRLPESL--PHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred CCCc-CCCCCHhH--------HHHHHHHhhccC-CcccCchhH--HHHhhcCCCccEEEeeCCC
Confidence 9975 44555432 347999999985 455442200 1112346889999999984
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.26 E-value=1e-13 Score=125.79 Aligned_cols=155 Identities=28% Similarity=0.328 Sum_probs=121.1
Q ss_pred ccccccCCCCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCcccccccccCCCcCCeEeccCCCCcccc
Q 038637 576 RLESVCDVEHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILP 655 (962)
Q Consensus 576 ~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~~lp 655 (962)
.++.+.+++++..|.+..++ ...+|+. +..+.+|++|++++| .++++|.+++.|+.||.|++.-|++..+|
T Consensus 25 ~~~gLf~~s~ITrLtLSHNK-------l~~vppn-ia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnrl~~lp 95 (264)
T KOG0617|consen 25 ELPGLFNMSNITRLTLSHNK-------LTVVPPN-IAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNRLNILP 95 (264)
T ss_pred hcccccchhhhhhhhcccCc-------eeecCCc-HHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhhhhcCc
Confidence 34555667777777776643 2344555 467999999999999 79999999999999999999999999999
Q ss_pred ccccccccCcEEeeCCCccc-cccchhcccCCCccEEecCCCCCccccCCCCCCCCCCCccCCeEeCCCCCCCcccccCc
Q 038637 656 ESINSLYNLHTILLENCWEL-KKLCKDMGNLTKLRHLRNSDAGLLEEMPKGFGKLTSLLTLGRFVVGKDSGSGLRELKSL 734 (962)
Q Consensus 656 ~~i~~L~~L~~L~L~~~~~l-~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L 734 (962)
..|+.++-|++|||.+|... ..+|..+..++.|+.|++++|. .+.+|..+|++++||.|..-..+- -....+++.|
T Consensus 96 rgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lrdndl--l~lpkeig~l 172 (264)
T KOG0617|consen 96 RGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKLTNLQILSLRDNDL--LSLPKEIGDL 172 (264)
T ss_pred cccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhhcceeEEeeccCch--hhCcHHHHHH
Confidence 99999999999999988322 4689999999999999999998 788999999999999995332221 1223455555
Q ss_pred ccCCCeEEE
Q 038637 735 THLQGTLRI 743 (962)
Q Consensus 735 ~~L~~~L~i 743 (962)
++|+ .|.|
T Consensus 173 t~lr-elhi 180 (264)
T KOG0617|consen 173 TRLR-ELHI 180 (264)
T ss_pred HHHH-HHhc
Confidence 5555 4544
No 24
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.25 E-value=2.9e-09 Score=119.15 Aligned_cols=302 Identities=12% Similarity=0.077 Sum_probs=173.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchh-ccc---ceEEEEEeCCCCCHHHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQ-RHF---QFKAWACVSEDFDVFRVT 276 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~F---~~~~wv~v~~~~~~~~~~ 276 (962)
..++||+.++++|...|..... ......+.|+|++|+|||++++.+++..... ... -..+|+++....+...++
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~--~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~~ 92 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILR--GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQVL 92 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHHH
Confidence 4689999999999999865321 2244678999999999999999999843211 111 135688888877888999
Q ss_pred HHHHHHhc---cCCCCCCccHHHHHHHHHhHhC--CceEEEEEecCCCCC---ccchhhccCCC-CCCC--CCcEEEEEe
Q 038637 277 KSILKSIA---NDQSNNDDDLNLLQEKLKKQLS--GNKFLLVLDDVWNKN---YNYWSILSCPF-GAGA--PGSKIVVTT 345 (962)
Q Consensus 277 ~~il~~l~---~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~---~~~~~~l~~~l-~~~~--~gs~ilvTt 345 (962)
..|++++. ........+..+....+.+.+. +++++||||+++.-. ......+.... .... ....+|.+|
T Consensus 93 ~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~ 172 (365)
T TIGR02928 93 VELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGIS 172 (365)
T ss_pred HHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEE
Confidence 99999984 2222122344455555666553 568899999995531 11112222211 1111 223445555
Q ss_pred cChhhHhhhC-------CCCcccCCCCCHHHHHHHHHHhhcC-CCCCCCCcchHHHHHHHHHhcCCChHH-HHHHHhhh-
Q 038637 346 RNLDVANLTR-------AYPKYGLKELSDDDCLRVVIQHSLG-ATGFSTNQSLKDVGEKIAKKCKGLPLA-AKTLGGLL- 415 (962)
Q Consensus 346 R~~~v~~~~~-------~~~~~~l~~L~~~~~~~Lf~~~a~~-~~~~~~~~~~~~~~~~I~~~c~glPLa-i~~~~~~L- 415 (962)
.......... ....+.+.+++.++..+++..++-. .......++..+....++..+.|.|-. +.++-.+.
T Consensus 173 n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~ 252 (365)
T TIGR02928 173 NDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGE 252 (365)
T ss_pred CCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4433211111 1245789999999999999988631 111112233334555677777888843 33332211
Q ss_pred -c--C-C--CChhHHHHHHhhhhhcccccccCchhHHHhhccCCchhhHhHHhhhcCC--CCCceeCHHHHHHHHH--Hc
Q 038637 416 -R--G-K--DDLTDWEFVLNTDIWKLQEENYGIIPALRVSYHFLPSQLKQCFAYCSLF--PKDYEFQEEEIILLWT--AE 485 (962)
Q Consensus 416 -~--~-~--~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~~~f--p~~~~i~~~~li~~W~--ae 485 (962)
+ . . -+.+..+.+.+.. -.....-++..||.+.|..+..++.. .++..+....+...+- ++
T Consensus 253 ~a~~~~~~~it~~~v~~a~~~~----------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~ 322 (365)
T TIGR02928 253 IAEREGAERVTEDHVEKAQEKI----------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCE 322 (365)
T ss_pred HHHHcCCCCCCHHHHHHHHHHH----------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Confidence 1 1 1 1233333333321 11233446678999888766665421 1334466666665331 22
Q ss_pred CCcccccCCCcHHHHHHHHHHHHhhCCCccccc
Q 038637 486 GFLDQEYNGRKMEDLGREFVRELHSRSLFQQSS 518 (962)
Q Consensus 486 g~i~~~~~~~~~e~~~~~~l~~L~~r~ll~~~~ 518 (962)
.+ .. ....+.....+++.|...|+|+...
T Consensus 323 ~~-~~---~~~~~~~~~~~l~~l~~~gli~~~~ 351 (365)
T TIGR02928 323 DI-GV---DPLTQRRISDLLNELDMLGLVEAEE 351 (365)
T ss_pred hc-CC---CCCcHHHHHHHHHHHHhcCCeEEEE
Confidence 11 10 1223466788999999999998643
No 25
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.15 E-value=2.7e-09 Score=113.89 Aligned_cols=182 Identities=18% Similarity=0.152 Sum_probs=116.1
Q ss_pred cEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCccHH----HHHHHHHh
Q 038637 228 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSIANDQSNNDDDLN----LLQEKLKK 303 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~----~~~~~l~~ 303 (962)
.+++.|+|++|+|||||++.+++..... .+ ..+|+ +....+..+++..++..++.+.. . .+.. .+...+..
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~-~~-~~~~~-~~~~~~~~~~l~~i~~~lG~~~~-~-~~~~~~~~~l~~~l~~ 117 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQE-RV-VAAKL-VNTRVDAEDLLRMVAADFGLETE-G-RDKAALLRELEDFLIE 117 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCC-Ce-EEeee-eCCCCCHHHHHHHHHHHcCCCCC-C-CCHHHHHHHHHHHHHH
Confidence 4688999999999999999999853321 11 12233 33455778889999988876543 2 2222 23333333
Q ss_pred Hh-CCceEEEEEecCCCCCccchhhccCCCC---CCCCCcEEEEEecChhhHhhhC----------CCCcccCCCCCHHH
Q 038637 304 QL-SGNKFLLVLDDVWNKNYNYWSILSCPFG---AGAPGSKIVVTTRNLDVANLTR----------AYPKYGLKELSDDD 369 (962)
Q Consensus 304 ~l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~---~~~~gs~ilvTtR~~~v~~~~~----------~~~~~~l~~L~~~~ 369 (962)
.. .+++.++|+||+|.-+...++.+..... .......|++|.... ...... ....+.+++++.+|
T Consensus 118 ~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e 196 (269)
T TIGR03015 118 QFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREE 196 (269)
T ss_pred HHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHH
Confidence 22 6788999999998866555665543221 112233456665542 221111 12357899999999
Q ss_pred HHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHHHHHHhhh
Q 038637 370 CLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAAKTLGGLL 415 (962)
Q Consensus 370 ~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~~L 415 (962)
..+++...+-.........-..+..+.|++.++|.|..|..++..+
T Consensus 197 ~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 197 TREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9999987764322111122346889999999999999999998765
No 26
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.10 E-value=3.8e-12 Score=130.97 Aligned_cols=115 Identities=26% Similarity=0.282 Sum_probs=95.2
Q ss_pred ccCcchhhhCCCCcccEEEeCCCcCcccc-cccccCCCcCCeEeccC-CCCccccc-cccccccCcEEeeCCCccccccc
Q 038637 603 AWSVPHMLLNHLPRLRVFSLCGYCNIFNL-PNEIGNLKHLRCLNLSR-TRIQILPE-SINSLYNLHTILLENCWELKKLC 679 (962)
Q Consensus 603 ~~~~~~~~l~~l~~Lr~L~L~~~~~~~~l-p~~i~~L~~Lr~L~Ls~-~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp 679 (962)
...+|...|+.+++||.||||+| .|..+ |+.|.++..|-.|-+.+ |+|+.+|+ .|+.|..||-|.+.-|......+
T Consensus 79 I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~ 157 (498)
T KOG4237|consen 79 ISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQ 157 (498)
T ss_pred cccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhH
Confidence 46789999999999999999999 67776 78999999988877766 99999998 58899999999998884434445
Q ss_pred hhcccCCCccEEecCCCCCccccCC-CCCCCCCCCccCCeE
Q 038637 680 KDMGNLTKLRHLRNSDAGLLEEMPK-GFGKLTSLLTLGRFV 719 (962)
Q Consensus 680 ~~i~~L~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~~~~ 719 (962)
..+..|++|..|.+.+|. ...++. .+..+.++++++.-.
T Consensus 158 ~al~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~ 197 (498)
T KOG4237|consen 158 DALRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQ 197 (498)
T ss_pred HHHHHhhhcchhcccchh-hhhhccccccchhccchHhhhc
Confidence 678999999999999987 677776 578888888885433
No 27
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.04 E-value=2.2e-09 Score=117.34 Aligned_cols=278 Identities=15% Similarity=0.116 Sum_probs=154.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSIL 280 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 280 (962)
.+|+|++..++.+..++..... .......+.|+|++|+||||||+.+++.. ...+ .++.. ........+..++
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~GppG~GKT~la~~ia~~l--~~~~---~~~~~-~~~~~~~~l~~~l 97 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKK-RGEALDHVLLYGPPGLGKTTLANIIANEM--GVNI---RITSG-PALEKPGDLAAIL 97 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHh-cCCCCCcEEEECCCCccHHHHHHHHHHHh--CCCe---EEEec-ccccChHHHHHHH
Confidence 5699999999999888854221 12345678899999999999999998843 2222 11211 1122223333444
Q ss_pred HHhccCCCCCCccH----HHHHHHHHhHhCCceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEEEecChhhHhhhC-
Q 038637 281 KSIANDQSNNDDDL----NLLQEKLKKQLSGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVVTTRNLDVANLTR- 355 (962)
Q Consensus 281 ~~l~~~~~~~~~~~----~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~- 355 (962)
..+....---.++. ....+.+...+.+.+..+|+|+..+... +...++ +.+-|..|++...+.....
T Consensus 98 ~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~-----~~~~l~---~~~li~at~~~~~l~~~L~s 169 (328)
T PRK00080 98 TNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARS-----IRLDLP---PFTLIGATTRAGLLTSPLRD 169 (328)
T ss_pred HhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccc-----eeecCC---CceEEeecCCcccCCHHHHH
Confidence 44332110000111 1233445555666666777776533211 111112 2445666777543332211
Q ss_pred -CCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHHHHHHhhhcCCCChhHHHHHHhhhhhc
Q 038637 356 -AYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAAKTLGGLLRGKDDLTDWEFVLNTDIWK 434 (962)
Q Consensus 356 -~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~~L~~~~~~~~w~~~~~~~~~~ 434 (962)
-...+++++++.++..+++.+.+-... ....++.+..|++.|+|.|-.+..+...+ ..|...... ..
T Consensus 170 Rf~~~~~l~~~~~~e~~~il~~~~~~~~----~~~~~~~~~~ia~~~~G~pR~a~~~l~~~------~~~a~~~~~--~~ 237 (328)
T PRK00080 170 RFGIVQRLEFYTVEELEKIVKRSARILG----VEIDEEGALEIARRSRGTPRIANRLLRRV------RDFAQVKGD--GV 237 (328)
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHHHcC----CCcCHHHHHHHHHHcCCCchHHHHHHHHH------HHHHHHcCC--CC
Confidence 124588999999999999998764321 12335678999999999996554444332 112111100 00
Q ss_pred ccc-cccCchhHHHhhccCCchhhHhHHh-hhcCCCCCceeCHHHHHHHHHHcCCcccccCCCcHHHHHHHHHH-HHhhC
Q 038637 435 LQE-ENYGIIPALRVSYHFLPSQLKQCFA-YCSLFPKDYEFQEEEIILLWTAEGFLDQEYNGRKMEDLGREFVR-ELHSR 511 (962)
Q Consensus 435 ~~~-~~~~i~~~l~~sy~~L~~~~k~cfl-~~~~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~~e~~~~~~l~-~L~~r 511 (962)
... .-......+...+..|++..+..+. ....|+.+ .+..+.+-... . ...+.+++.++ .|++.
T Consensus 238 I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l------g------~~~~~~~~~~e~~Li~~ 304 (328)
T PRK00080 238 ITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL------G------EERDTIEDVYEPYLIQQ 304 (328)
T ss_pred CCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH------C------CCcchHHHHhhHHHHHc
Confidence 000 0012334456677888888777775 67777665 46665553322 1 11234555556 89999
Q ss_pred CCccccc
Q 038637 512 SLFQQSS 518 (962)
Q Consensus 512 ~ll~~~~ 518 (962)
+|++...
T Consensus 305 ~li~~~~ 311 (328)
T PRK00080 305 GFIQRTP 311 (328)
T ss_pred CCcccCC
Confidence 9998654
No 28
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.04 E-value=3e-09 Score=115.68 Aligned_cols=278 Identities=15% Similarity=0.111 Sum_probs=153.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSIL 280 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 280 (962)
.+|||++..+++|..++..... .......+.++|++|+|||+||+.+++.. ...+ ..+..+..... ..+...+
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~-~~~~~~~~ll~Gp~G~GKT~la~~ia~~~--~~~~---~~~~~~~~~~~-~~l~~~l 76 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKM-RQEALDHLLLYGPPGLGKTTLAHIIANEM--GVNL---KITSGPALEKP-GDLAAIL 76 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCCHHHHHHHHHHHh--CCCE---EEeccchhcCc-hhHHHHH
Confidence 4699999999999998864321 12345668899999999999999998843 2222 11221111111 2222333
Q ss_pred HHhccCCCCCCcc----HHHHHHHHHhHhCCceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEEEecChhhHhhhC-
Q 038637 281 KSIANDQSNNDDD----LNLLQEKLKKQLSGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVVTTRNLDVANLTR- 355 (962)
Q Consensus 281 ~~l~~~~~~~~~~----~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~- 355 (962)
..+....---.++ ....++.+...+.+.+..+|+++..... .| ...++ +.+-|..||+...+.....
T Consensus 77 ~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~--~~---~~~~~---~~~li~~t~~~~~l~~~l~s 148 (305)
T TIGR00635 77 TNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSAR--SV---RLDLP---PFTLVGATTRAGMLTSPLRD 148 (305)
T ss_pred HhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCcccc--ce---eecCC---CeEEEEecCCccccCHHHHh
Confidence 3333211000011 1123455666666777777787764431 12 11222 3455666777644433211
Q ss_pred -CCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHHHHHHhhhcCCCChhHHHHHHhhhhhc
Q 038637 356 -AYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAAKTLGGLLRGKDDLTDWEFVLNTDIWK 434 (962)
Q Consensus 356 -~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~~L~~~~~~~~w~~~~~~~~~~ 434 (962)
-...+.+++++.++..+++.+.+-.. + ..-..+....|++.|+|.|-.+..++..+ |..........
T Consensus 149 R~~~~~~l~~l~~~e~~~il~~~~~~~-~---~~~~~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~~~~~~~ 216 (305)
T TIGR00635 149 RFGIILRLEFYTVEELAEIVSRSAGLL-N---VEIEPEAALEIARRSRGTPRIANRLLRRV--------RDFAQVRGQKI 216 (305)
T ss_pred hcceEEEeCCCCHHHHHHHHHHHHHHh-C---CCcCHHHHHHHHHHhCCCcchHHHHHHHH--------HHHHHHcCCCC
Confidence 12457899999999999999876422 1 12235677889999999997665554432 11100000000
Q ss_pred ccc-cccCchhHHHhhccCCchhhHhHHh-hhcCCCCCceeCHHHHHHHHHHcCCcccccCCCcHHHHHHHHHH-HHhhC
Q 038637 435 LQE-ENYGIIPALRVSYHFLPSQLKQCFA-YCSLFPKDYEFQEEEIILLWTAEGFLDQEYNGRKMEDLGREFVR-ELHSR 511 (962)
Q Consensus 435 ~~~-~~~~i~~~l~~sy~~L~~~~k~cfl-~~~~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~~e~~~~~~l~-~L~~r 511 (962)
... .-......+...|..++++.+..+. .+..++.+ .+..+.+-... +. ....++..++ .|+++
T Consensus 217 it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l-----------g~-~~~~~~~~~e~~Li~~ 283 (305)
T TIGR00635 217 INRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL-----------GE-DADTIEDVYEPYLLQI 283 (305)
T ss_pred cCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh-----------CC-CcchHHHhhhHHHHHc
Confidence 000 0011222356678889888777666 55666543 44444433221 11 1235666677 69999
Q ss_pred CCccccc
Q 038637 512 SLFQQSS 518 (962)
Q Consensus 512 ~ll~~~~ 518 (962)
+|++...
T Consensus 284 ~li~~~~ 290 (305)
T TIGR00635 284 GFLQRTP 290 (305)
T ss_pred CCcccCC
Confidence 9997654
No 29
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.01 E-value=1.1e-09 Score=114.44 Aligned_cols=196 Identities=20% Similarity=0.205 Sum_probs=99.2
Q ss_pred cccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHH---
Q 038637 203 VYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSI--- 279 (962)
Q Consensus 203 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i--- 279 (962)
|+||+.++++|.+++... ..+.+.|+|+.|+|||+|++.+.+.. +..-...+|+...+.... .....+
T Consensus 1 F~gR~~el~~l~~~l~~~------~~~~~~l~G~rg~GKTsLl~~~~~~~--~~~~~~~~y~~~~~~~~~-~~~~~~~~~ 71 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG------PSQHILLYGPRGSGKTSLLKEFINEL--KEKGYKVVYIDFLEESNE-SSLRSFIEE 71 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHHC--T--EECCCHHCCTTBSHH-HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh------cCcEEEEEcCCcCCHHHHHHHHHHHh--hhcCCcEEEEecccchhh-hHHHHHHHH
Confidence 689999999999999654 34789999999999999999998843 221113444444444322 222222
Q ss_pred -------HHHhccCCCC---------CCccHHHHHHHHHhHh--CCceEEEEEecCCCCC------ccchhhccCCCCC-
Q 038637 280 -------LKSIANDQSN---------NDDDLNLLQEKLKKQL--SGNKFLLVLDDVWNKN------YNYWSILSCPFGA- 334 (962)
Q Consensus 280 -------l~~l~~~~~~---------~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~------~~~~~~l~~~l~~- 334 (962)
.+.+...... ...........+.+.+ .+++++||+||+..-. ......+...+..
T Consensus 72 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~ 151 (234)
T PF01637_consen 72 TSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSL 151 (234)
T ss_dssp HHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhc
Confidence 1112211110 1111122222222222 2345999999994432 0111112211211
Q ss_pred -CCCCcEEEEEecChhhHhh--------hCCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCCh
Q 038637 335 -GAPGSKIVVTTRNLDVANL--------TRAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLP 405 (962)
Q Consensus 335 -~~~gs~ilvTtR~~~v~~~--------~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glP 405 (962)
......+|++.....+... .+....+.+++|+.+++++++....-.. ... +.-.+..++|+..+||+|
T Consensus 152 ~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~--~~~-~~~~~~~~~i~~~~gG~P 228 (234)
T PF01637_consen 152 LSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL--IKL-PFSDEDIEEIYSLTGGNP 228 (234)
T ss_dssp ---TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-H
T ss_pred cccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh--hcc-cCCHHHHHHHHHHhCCCH
Confidence 1233345555554443332 1222348999999999999998865322 111 223566799999999999
Q ss_pred HHHHH
Q 038637 406 LAAKT 410 (962)
Q Consensus 406 Lai~~ 410 (962)
..|..
T Consensus 229 ~~l~~ 233 (234)
T PF01637_consen 229 RYLQE 233 (234)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 98864
No 30
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.98 E-value=4.4e-08 Score=111.91 Aligned_cols=296 Identities=18% Similarity=0.202 Sum_probs=189.1
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCC-CCCHHHHHHHHH
Q 038637 202 EVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSE-DFDVFRVTKSIL 280 (962)
Q Consensus 202 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~-~~~~~~~~~~il 280 (962)
..|-|.. |++.|... .+.+.+.|..|+|.|||||+-+.+. + ...=..++|.++.+ +.++..+..-++
T Consensus 20 ~~v~R~r----L~~~L~~~-----~~~RL~li~APAGfGKttl~aq~~~--~-~~~~~~v~Wlslde~dndp~rF~~yLi 87 (894)
T COG2909 20 NYVVRPR----LLDRLRRA-----NDYRLILISAPAGFGKTTLLAQWRE--L-AADGAAVAWLSLDESDNDPARFLSYLI 87 (894)
T ss_pred cccccHH----HHHHHhcC-----CCceEEEEeCCCCCcHHHHHHHHHH--h-cCcccceeEeecCCccCCHHHHHHHHH
Confidence 3455554 55666433 3689999999999999999988865 1 12235688999876 467888888888
Q ss_pred HHhccCCCC------------CCccHHHHHHHHHhHhC--CceEEEEEecCCCCCccchh-hccCCCCCCCCCcEEEEEe
Q 038637 281 KSIANDQSN------------NDDDLNLLQEKLKKQLS--GNKFLLVLDDVWNKNYNYWS-ILSCPFGAGAPGSKIVVTT 345 (962)
Q Consensus 281 ~~l~~~~~~------------~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~~~~~-~l~~~l~~~~~gs~ilvTt 345 (962)
..+..-.+. ...+...+.+.+...+. .++..+||||..-....... .+...+.....+-..||||
T Consensus 88 ~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~S 167 (894)
T COG2909 88 AALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTS 167 (894)
T ss_pred HHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEe
Confidence 888743321 22334445555555554 46899999998543222222 2222333444788999999
Q ss_pred cChh---hHhhhCCCCcccC----CCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHHHHHHhhhcCC
Q 038637 346 RNLD---VANLTRAYPKYGL----KELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAAKTLGGLLRGK 418 (962)
Q Consensus 346 R~~~---v~~~~~~~~~~~l----~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~~L~~~ 418 (962)
|+.. +++.--.....++ -.++.+|+-++|.... ..+-.+.-++.+.+..+|-+-|+..++=.++.+
T Consensus 168 R~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~-------~l~Ld~~~~~~L~~~teGW~~al~L~aLa~~~~ 240 (894)
T COG2909 168 RSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRG-------SLPLDAADLKALYDRTEGWAAALQLIALALRNN 240 (894)
T ss_pred ccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcC-------CCCCChHHHHHHHhhcccHHHHHHHHHHHccCC
Confidence 9853 2222111222333 3588999999998763 112234568899999999999999999888744
Q ss_pred CChhHHHHHHhhhhhcccccccCchh-HHHhhccCCchhhHhHHhhhcCCCCCceeCHHHHHHHHHHcCCcccccCCCcH
Q 038637 419 DDLTDWEFVLNTDIWKLQEENYGIIP-ALRVSYHFLPSQLKQCFAYCSLFPKDYEFQEEEIILLWTAEGFLDQEYNGRKM 497 (962)
Q Consensus 419 ~~~~~w~~~~~~~~~~~~~~~~~i~~-~l~~sy~~L~~~~k~cfl~~~~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~~ 497 (962)
.+.+.-...++- ....+.. ...--++.||+++|..++-+|+++.- -..|+..- +-
T Consensus 241 ~~~~q~~~~LsG-------~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~f----~~eL~~~L-------------tg 296 (894)
T COG2909 241 TSAEQSLRGLSG-------AASHLSDYLVEEVLDRLPPELRDFLLQTSVLSRF----NDELCNAL-------------TG 296 (894)
T ss_pred CcHHHHhhhccc-------hHHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHHh----hHHHHHHH-------------hc
Confidence 333322222210 0111111 22334688999999999999998542 12333221 11
Q ss_pred HHHHHHHHHHHhhCCCcc-cccCCCCcEEEcchhhHHHHHhhcc
Q 038637 498 EDLGREFVRELHSRSLFQ-QSSRDASRFVMHDLINDLARWAAGE 540 (962)
Q Consensus 498 e~~~~~~l~~L~~r~ll~-~~~~~~~~~~mHdli~d~a~~~~~~ 540 (962)
++.+...+++|-+++|+- +-++....|+.|.++.||.+.....
T Consensus 297 ~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 297 EENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred CCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 345677899999999875 4444578899999999998765543
No 31
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.92 E-value=1.4e-10 Score=127.63 Aligned_cols=267 Identities=19% Similarity=0.143 Sum_probs=122.6
Q ss_pred hCCCCcccEEEeCCCcCc-----ccccccccCCCcCCeEeccCCCCcc-------ccccccccccCcEEeeCCCcccccc
Q 038637 611 LNHLPRLRVFSLCGYCNI-----FNLPNEIGNLKHLRCLNLSRTRIQI-------LPESINSLYNLHTILLENCWELKKL 678 (962)
Q Consensus 611 l~~l~~Lr~L~L~~~~~~-----~~lp~~i~~L~~Lr~L~Ls~~~i~~-------lp~~i~~L~~L~~L~L~~~~~l~~l 678 (962)
+..+..|++|++++| .+ ..++..+...+.|++|+++++.+.. ++..+.++++|+.|++++|......
T Consensus 19 ~~~l~~L~~l~l~~~-~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 97 (319)
T cd00116 19 LPKLLCLQVLRLEGN-TLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDG 97 (319)
T ss_pred HHHHhhccEEeecCC-CCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhH
Confidence 445555777777766 33 2244445556667777776665542 2334555667777777666433334
Q ss_pred chhcccCCC---ccEEecCCCCCcc----ccCCCCCCC-CCCCccCCeEeCCCCCCCcccccCcccCCCeEEEeccCCCC
Q 038637 679 CKDMGNLTK---LRHLRNSDAGLLE----EMPKGFGKL-TSLLTLGRFVVGKDSGSGLRELKSLTHLQGTLRISKLENVE 750 (962)
Q Consensus 679 p~~i~~L~~---L~~L~l~~~~~~~----~~p~~i~~l-~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~ 750 (962)
+..+..+.+ |++|++++|.... .+...+..+ ++|+.| .+....-..
T Consensus 98 ~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L--------------------------~L~~n~l~~ 151 (319)
T cd00116 98 CGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKL--------------------------VLGRNRLEG 151 (319)
T ss_pred HHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEE--------------------------EcCCCcCCc
Confidence 444444433 7777776665221 111112222 223322 222211100
Q ss_pred ChhhhhhhcCcCCcCCCceEEeccCCCCCCccchhhHHhhhccCCCCCCcCeEEEeecCCCC-----CCcCcCCCCCCCc
Q 038637 751 DVGDACEAQLNNKVNLRTLLLDWSARDVQNLDQCEFETRVLSMLKPHRDVQELTIRGYGGTK-----FPIWLGDSSFSKL 825 (962)
Q Consensus 751 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----~p~~~~~~~l~~L 825 (962)
.....+...+..+.+|+.|++.++.. ... ....+...+...++|+.|++++|.+.. ++..+. .+++|
T Consensus 152 ~~~~~~~~~~~~~~~L~~L~l~~n~l-----~~~-~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~--~~~~L 223 (319)
T cd00116 152 ASCEALAKALRANRDLKELNLANNGI-----GDA-GIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLA--SLKSL 223 (319)
T ss_pred hHHHHHHHHHHhCCCcCEEECcCCCC-----chH-HHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhc--ccCCC
Confidence 11112223344445666666665541 110 011223334444677777777665431 122222 45677
Q ss_pred cEEEEeCCCCCCC-CCCC-----CCCCCcCeEeecCCCCceEeCccccCCCCCCCCCCcceeeccccccccccccccCCc
Q 038637 826 VNLKFGYCRMCTS-LPSV-----GQLPLLKHLKISGMDRVKSVGLEFYGSSCSVPFPSLETLSFSDMREWEEWISCGAGQ 899 (962)
Q Consensus 826 ~~L~L~~~~~~~~-l~~l-----~~lp~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~ 899 (962)
+.|++++|.+.+. +..+ ...+.|++|++++|.. ...+..... .....+++|+.|+++++. +........ .
T Consensus 224 ~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i-~~~~~~~l~-~~~~~~~~L~~l~l~~N~-l~~~~~~~~-~ 299 (319)
T cd00116 224 EVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDI-TDDGAKDLA-EVLAEKESLLELDLRGNK-FGEEGAQLL-A 299 (319)
T ss_pred CEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCC-CcHHHHHHH-HHHhcCCCccEEECCCCC-CcHHHHHHH-H
Confidence 7777777765531 1111 1246777777776632 211100000 001115677777777643 322210000 0
Q ss_pred cccCcC-CccceEeEccC
Q 038637 900 EVDEVF-PKLRKLSLFNC 916 (962)
Q Consensus 900 ~~~~~~-p~L~~L~l~~c 916 (962)
.....+ +.|+.|++.++
T Consensus 300 ~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 300 ESLLEPGNELESLWVKDD 317 (319)
T ss_pred HHHhhcCCchhhcccCCC
Confidence 012234 67788877765
No 32
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.87 E-value=4.9e-11 Score=122.98 Aligned_cols=102 Identities=24% Similarity=0.345 Sum_probs=83.0
Q ss_pred ccEEEeCCCcCccccc-ccccCCCcCCeEeccCCCCccc-cccccccccCcEEeeCCCccccccchh-cccCCCccEEec
Q 038637 617 LRVFSLCGYCNIFNLP-NEIGNLKHLRCLNLSRTRIQIL-PESINSLYNLHTILLENCWELKKLCKD-MGNLTKLRHLRN 693 (962)
Q Consensus 617 Lr~L~L~~~~~~~~lp-~~i~~L~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l 693 (962)
-..++|..| .|..+| .+|+.++.||.||||+|.|+.+ |..|..|.+|-.|-+.+++.+..+|.. |++|..|+.|.+
T Consensus 69 tveirLdqN-~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll 147 (498)
T KOG4237|consen 69 TVEIRLDQN-QISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL 147 (498)
T ss_pred ceEEEeccC-CcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence 456788888 799998 6789999999999999999966 668899999999988886699999885 689999999998
Q ss_pred CCCCCccccC-CCCCCCCCCCccCCeEe
Q 038637 694 SDAGLLEEMP-KGFGKLTSLLTLGRFVV 720 (962)
Q Consensus 694 ~~~~~~~~~p-~~i~~l~~L~~L~~~~~ 720 (962)
.-|. +..++ ..+..|++|..|..|..
T Consensus 148 Nan~-i~Cir~~al~dL~~l~lLslyDn 174 (498)
T KOG4237|consen 148 NANH-INCIRQDALRDLPSLSLLSLYDN 174 (498)
T ss_pred Chhh-hcchhHHHHHHhhhcchhcccch
Confidence 8877 44443 45777888877766654
No 33
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.86 E-value=1.6e-07 Score=108.12 Aligned_cols=302 Identities=15% Similarity=0.133 Sum_probs=164.6
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccch---hcccc--eEEEEEeCCCCCHHH
Q 038637 200 EAEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRV---QRHFQ--FKAWACVSEDFDVFR 274 (962)
Q Consensus 200 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~~F~--~~~wv~v~~~~~~~~ 274 (962)
+..+.|||+++++|...|...-. +.....++.|+|++|.|||+.++.|.+.... ....+ .+++|.+....+...
T Consensus 754 PD~LPhREeEIeeLasfL~paIk-gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIK-QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHh-cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 35688999999999999865432 1233467889999999999999999874211 11122 356788877778889
Q ss_pred HHHHHHHHhccCCCCCCccHHHHHHHHHhHhC---CceEEEEEecCCCCCccchhhccCCCC-CCCCCcEEEE--EecCh
Q 038637 275 VTKSILKSIANDQSNNDDDLNLLQEKLKKQLS---GNKFLLVLDDVWNKNYNYWSILSCPFG-AGAPGSKIVV--TTRNL 348 (962)
Q Consensus 275 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~---~kr~LlVlDdv~~~~~~~~~~l~~~l~-~~~~gs~ilv--TtR~~ 348 (962)
++..|.+++.+.............+.+...+. ....+||||++..-....-+.+...+. ....+++|+| +|...
T Consensus 833 IYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 833 AYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTM 912 (1164)
T ss_pred HHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCch
Confidence 99999999965443233333444555555442 234589999994321111111211111 1124555544 33321
Q ss_pred h--------hHhhhCCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHHHHHHhhhcCCC-
Q 038637 349 D--------VANLTRAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAAKTLGGLLRGKD- 419 (962)
Q Consensus 349 ~--------v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~~L~~~~- 419 (962)
+ +...++ ...+...+++.++-.+++..++-...+.-.+..++-+|+.++...|-.=.||.++-.+...+.
T Consensus 913 DLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEikeg 991 (1164)
T PTZ00112 913 DLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKRG 991 (1164)
T ss_pred hcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcCC
Confidence 1 222222 234778999999999999998854322223334444555555444555566666655443221
Q ss_pred ---ChhHHHHHHhhhhhcccccccCchhHHHhhccCCchhhHhHHhhhcCCCC---CceeCHHHHHHHH--HHc--C-Cc
Q 038637 420 ---DLTDWEFVLNTDIWKLQEENYGIIPALRVSYHFLPSQLKQCFAYCSLFPK---DYEFQEEEIILLW--TAE--G-FL 488 (962)
Q Consensus 420 ---~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~~~fp~---~~~i~~~~li~~W--~ae--g-~i 488 (962)
..+.-..+.+.. -...+.-....||.+.|-.+..+...-+ ...++...+.... +++ | .+
T Consensus 992 skVT~eHVrkAleei----------E~srI~e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~Gk~i 1061 (1164)
T PTZ00112 992 QKIVPRDITEATNQL----------FDSPLTNAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETSGKYI 1061 (1164)
T ss_pred CccCHHHHHHHHHHH----------HhhhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhhhhhc
Confidence 111111111110 1112333456789887776654432211 1234444443322 222 1 11
Q ss_pred ccccCCCcHHHHHHHHHHHHhhCCCcccc
Q 038637 489 DQEYNGRKMEDLGREFVRELHSRSLFQQS 517 (962)
Q Consensus 489 ~~~~~~~~~e~~~~~~l~~L~~r~ll~~~ 517 (962)
. .....+ ...+++.+|...|+|-..
T Consensus 1062 G---v~plTq-RV~d~L~eL~~LGIIl~e 1086 (1164)
T PTZ00112 1062 G---MCSNNE-LFKIMLDKLVKMGILLIR 1086 (1164)
T ss_pred C---CCCcHH-HHHHHHHHHHhcCeEEec
Confidence 1 112223 677788888888877543
No 34
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.86 E-value=1.7e-10 Score=126.84 Aligned_cols=282 Identities=20% Similarity=0.134 Sum_probs=168.8
Q ss_pred EEeCCCcCc--ccccccccCCCcCCeEeccCCCCc-----cccccccccccCcEEeeCCCccc------cccchhcccCC
Q 038637 620 FSLCGYCNI--FNLPNEIGNLKHLRCLNLSRTRIQ-----ILPESINSLYNLHTILLENCWEL------KKLCKDMGNLT 686 (962)
Q Consensus 620 L~L~~~~~~--~~lp~~i~~L~~Lr~L~Ls~~~i~-----~lp~~i~~L~~L~~L~L~~~~~l------~~lp~~i~~L~ 686 (962)
|+|.++ .+ ...+..+..+.+|++|+++++.++ .+++.+...++|++|+++++... ..++..+..++
T Consensus 3 l~L~~~-~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 3 LSLKGE-LLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred cccccC-cccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 556555 33 234455667788999999999984 56777888899999999887332 23455677889
Q ss_pred CccEEecCCCCCccccCCCCCCCCCCCccCCeEeCCCCCCCcccccCcccCCCeEEEeccCCCCChhhhhhhcCcCC-cC
Q 038637 687 KLRHLRNSDAGLLEEMPKGFGKLTSLLTLGRFVVGKDSGSGLRELKSLTHLQGTLRISKLENVEDVGDACEAQLNNK-VN 765 (962)
Q Consensus 687 ~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~-~~ 765 (962)
+|++|++++|......+..+..+.+ + ++|+ .|.+....-.......+...+..+ ++
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~l~~---------------------~-~~L~-~L~ls~~~~~~~~~~~l~~~l~~~~~~ 138 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLESLLR---------------------S-SSLQ-ELKLNNNGLGDRGLRLLAKGLKDLPPA 138 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHHHhc---------------------c-Cccc-EEEeeCCccchHHHHHHHHHHHhCCCC
Confidence 9999999998743333333333222 0 1222 333333221111122233345555 78
Q ss_pred CCceEEeccCCCCCCccchhhHHhhhccCCCCCCcCeEEEeecCCCC-----CCcCcCCCCCCCccEEEEeCCCCCCC--
Q 038637 766 LRTLLLDWSARDVQNLDQCEFETRVLSMLKPHRDVQELTIRGYGGTK-----FPIWLGDSSFSKLVNLKFGYCRMCTS-- 838 (962)
Q Consensus 766 L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----~p~~~~~~~l~~L~~L~L~~~~~~~~-- 838 (962)
|+.|++..+.. ... ....+...+..+++|+.|+++++.+.. ++..+. .+++|+.|++++|.+.+.
T Consensus 139 L~~L~L~~n~l-----~~~-~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~--~~~~L~~L~L~~n~i~~~~~ 210 (319)
T cd00116 139 LEKLVLGRNRL-----EGA-SCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLK--ANCNLEVLDLNNNGLTDEGA 210 (319)
T ss_pred ceEEEcCCCcC-----Cch-HHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHH--hCCCCCEEeccCCccChHHH
Confidence 99999998862 111 122344556667889999999987652 122221 457999999999987632
Q ss_pred --CC-CCCCCCCcCeEeecCCCCceEeCc-cccCCCCCCCCCCcceeeccccccccccccccCCccccCcCCccceEeEc
Q 038637 839 --LP-SVGQLPLLKHLKISGMDRVKSVGL-EFYGSSCSVPFPSLETLSFSDMREWEEWISCGAGQEVDEVFPKLRKLSLF 914 (962)
Q Consensus 839 --l~-~l~~lp~L~~L~L~~~~~~~~~~~-~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~ 914 (962)
++ .+..+|+|++|++++|+. ...+. .+.. ......+.|+.|++++|. ++.... .........+++|+.|+++
T Consensus 211 ~~l~~~~~~~~~L~~L~ls~n~l-~~~~~~~l~~-~~~~~~~~L~~L~l~~n~-i~~~~~-~~l~~~~~~~~~L~~l~l~ 286 (319)
T cd00116 211 SALAETLASLKSLEVLNLGDNNL-TDAGAAALAS-ALLSPNISLLTLSLSCND-ITDDGA-KDLAEVLAEKESLLELDLR 286 (319)
T ss_pred HHHHHHhcccCCCCEEecCCCcC-chHHHHHHHH-HHhccCCCceEEEccCCC-CCcHHH-HHHHHHHhcCCCccEEECC
Confidence 22 466789999999999753 22111 1111 000124799999999863 321100 0000112346899999999
Q ss_pred cCCCcccc----CC---CCC-CCcceEEEccc
Q 038637 915 NCYKLQGT----LP---KRL-LLLEKLVIKSC 938 (962)
Q Consensus 915 ~c~~L~~~----lp---~~l-~~L~~L~i~~c 938 (962)
+| .++.. +. ... +.|+.|++.+.
T Consensus 287 ~N-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 287 GN-KFGEEGAQLLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred CC-CCcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence 97 56521 11 123 57777777654
No 35
>PF05729 NACHT: NACHT domain
Probab=98.85 E-value=9.5e-09 Score=100.85 Aligned_cols=142 Identities=17% Similarity=0.214 Sum_probs=86.9
Q ss_pred EEEEEEcCCCchHHHHHHHHhCccchhcc----cceEEEEEeCCCCCHH---HHHHHHHHHhccCCCCCCccHHHHHHHH
Q 038637 229 SVISINGMGGVGKTTLAQLVYNDDRVQRH----FQFKAWACVSEDFDVF---RVTKSILKSIANDQSNNDDDLNLLQEKL 301 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----F~~~~wv~v~~~~~~~---~~~~~il~~l~~~~~~~~~~~~~~~~~l 301 (962)
+++.|+|.+|+||||+++.++........ +...+|.+.+...... .+...+..+..... ..... .+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~----~~~~~---~~ 73 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI----APIEE---LL 73 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch----hhhHH---HH
Confidence 57899999999999999999875332222 4456677766544332 33333333332211 11111 12
Q ss_pred HhH-hCCceEEEEEecCCCCCcc-------chhhccC-CCCC-CCCCcEEEEEecChhh---HhhhCCCCcccCCCCCHH
Q 038637 302 KKQ-LSGNKFLLVLDDVWNKNYN-------YWSILSC-PFGA-GAPGSKIVVTTRNLDV---ANLTRAYPKYGLKELSDD 368 (962)
Q Consensus 302 ~~~-l~~kr~LlVlDdv~~~~~~-------~~~~l~~-~l~~-~~~gs~ilvTtR~~~v---~~~~~~~~~~~l~~L~~~ 368 (962)
... .+.++++||+|++.+-... .+..+.. .+.. ..++.+++||+|.... .........+.+.+|+++
T Consensus 74 ~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~ 153 (166)
T PF05729_consen 74 QELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEE 153 (166)
T ss_pred HHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHH
Confidence 111 2578999999999543211 1222222 2222 2478999999999665 333444467899999999
Q ss_pred HHHHHHHHh
Q 038637 369 DCLRVVIQH 377 (962)
Q Consensus 369 ~~~~Lf~~~ 377 (962)
+..+++.+.
T Consensus 154 ~~~~~~~~~ 162 (166)
T PF05729_consen 154 DIKQYLRKY 162 (166)
T ss_pred HHHHHHHHH
Confidence 999999765
No 36
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.78 E-value=7.3e-08 Score=116.87 Aligned_cols=312 Identities=14% Similarity=0.173 Sum_probs=180.9
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEE---eCCCC---CHHHH
Q 038637 202 EVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWAC---VSEDF---DVFRV 275 (962)
Q Consensus 202 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~---v~~~~---~~~~~ 275 (962)
+++||+.+++.|...+..... +...++.+.|..|||||+|+++|.. .+.+.+...+--. ...+. ...+.
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~---g~~~~~lv~G~sGIGKsalv~ev~~--~i~~~~~~~i~~~f~q~~~~ipl~~lvq~ 75 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSK---GRGEVVLVAGESGIGKSALVNEVHK--PITQQRGYFIKGKFDQFERNIPLSPLVQA 75 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhC---CCeEEEEEeecCCCcHHHHHHHHHH--HHhccceeeeHhhcccccCCCchHHHHHH
Confidence 378999999999999976543 5667999999999999999999987 3333321111111 11111 22334
Q ss_pred HHHHHHHhccCC-------------------CC---------------------CCccHH-----HHHHHHHhHhC-Cce
Q 038637 276 TKSILKSIANDQ-------------------SN---------------------NDDDLN-----LLQEKLKKQLS-GNK 309 (962)
Q Consensus 276 ~~~il~~l~~~~-------------------~~---------------------~~~~~~-----~~~~~l~~~l~-~kr 309 (962)
++++..++.... .. .....+ ..+..+..... .|+
T Consensus 76 ~r~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~p 155 (849)
T COG3899 76 FRDLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHP 155 (849)
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCC
Confidence 444444442111 00 000001 12233344443 469
Q ss_pred EEEEEecCCCCCccchhhccCCCCCCC------CCcEEEEEecCh--hhHhhhCCCCcccCCCCCHHHHHHHHHHhhcCC
Q 038637 310 FLLVLDDVWNKNYNYWSILSCPFGAGA------PGSKIVVTTRNL--DVANLTRAYPKYGLKELSDDDCLRVVIQHSLGA 381 (962)
Q Consensus 310 ~LlVlDdv~~~~~~~~~~l~~~l~~~~------~gs~ilvTtR~~--~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~ 381 (962)
.++|+||+.+.+....+.+...+.... +..-.+.|.+.. .+.........+.+.||+..+...+..... +.
T Consensus 156 lVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l-~~ 234 (849)
T COG3899 156 LVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATL-GC 234 (849)
T ss_pred eEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHh-CC
Confidence 999999996665444444433222111 111122233322 122222234679999999999999997764 21
Q ss_pred CCCCCCcchHHHHHHHHHhcCCChHHHHHHHhhhcCC------CChhHHHHHHhhhhhcccccccCchhHHHhhccCCch
Q 038637 382 TGFSTNQSLKDVGEKIAKKCKGLPLAAKTLGGLLRGK------DDLTDWEFVLNTDIWKLQEENYGIIPALRVSYHFLPS 455 (962)
Q Consensus 382 ~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~~L~~~------~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~ 455 (962)
. .....+....|+++..|+|+.+.-+-..+... .+...|..-..+. ......+.+...+..-.+.||.
T Consensus 235 ~----~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i--~~~~~~~~vv~~l~~rl~kL~~ 308 (849)
T COG3899 235 T----KLLPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASL--GILATTDAVVEFLAARLQKLPG 308 (849)
T ss_pred c----ccccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhc--CCchhhHHHHHHHHHHHhcCCH
Confidence 1 23345778999999999999999998887664 2333443322111 1111112255568888999999
Q ss_pred hhHhHHhhhcCCCCCceeCHHHHHHHHHHcCCcccccCCCcHHHHHHHHHHHHhhCCCccccc-----CCC--C-cEEEc
Q 038637 456 QLKQCFAYCSLFPKDYEFQEEEIILLWTAEGFLDQEYNGRKMEDLGREFVRELHSRSLFQQSS-----RDA--S-RFVMH 527 (962)
Q Consensus 456 ~~k~cfl~~~~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~~e~~~~~~l~~L~~r~ll~~~~-----~~~--~-~~~mH 527 (962)
..+..+-..|++- -.|+.+.|-..|- ....+.+....+.|....++...+ .+. . +-..|
T Consensus 309 ~t~~Vl~~AA~iG--~~F~l~~La~l~~-----------~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H 375 (849)
T COG3899 309 TTREVLKAAACIG--NRFDLDTLAALAE-----------DSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLH 375 (849)
T ss_pred HHHHHHHHHHHhC--ccCCHHHHHHHHh-----------hchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhH
Confidence 9999999999985 4566666655442 133455666666666555553221 111 1 22468
Q ss_pred chhhHHHHHhh
Q 038637 528 DLINDLARWAA 538 (962)
Q Consensus 528 dli~d~a~~~~ 538 (962)
|.+++.|-...
T Consensus 376 ~~vqqaaY~~i 386 (849)
T COG3899 376 DRVQQAAYNLI 386 (849)
T ss_pred HHHHHHHhccC
Confidence 88888885443
No 37
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.73 E-value=8e-08 Score=100.80 Aligned_cols=172 Identities=23% Similarity=0.278 Sum_probs=103.9
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHH
Q 038637 200 EAEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSI 279 (962)
Q Consensus 200 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i 279 (962)
..+++|-+..+.+.++ .+.+.-..+||++|+||||||+.+.. .....|. .++...+-.+-++.+
T Consensus 29 Q~HLlg~~~~lrr~v~---------~~~l~SmIl~GPPG~GKTTlA~liA~--~~~~~f~-----~~sAv~~gvkdlr~i 92 (436)
T COG2256 29 QEHLLGEGKPLRRAVE---------AGHLHSMILWGPPGTGKTTLARLIAG--TTNAAFE-----ALSAVTSGVKDLREI 92 (436)
T ss_pred hHhhhCCCchHHHHHh---------cCCCceeEEECCCCCCHHHHHHHHHH--hhCCceE-----EeccccccHHHHHHH
Confidence 3445555555544433 24667788999999999999999987 3444443 333333222222222
Q ss_pred HHHhccCCCCCCccHHHHHHHH-HhHhCCceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEE--EecChhh---Hhh
Q 038637 280 LKSIANDQSNNDDDLNLLQEKL-KKQLSGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVV--TTRNLDV---ANL 353 (962)
Q Consensus 280 l~~l~~~~~~~~~~~~~~~~~l-~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv--TtR~~~v---~~~ 353 (962)
.+.- +....+++.+|++|.|+.-+..+.+.+. |.-..|.-|+| ||.++.- ...
T Consensus 93 ------------------~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lL---p~vE~G~iilIGATTENPsF~ln~AL 151 (436)
T COG2256 93 ------------------IEEARKNRLLGRRTILFLDEIHRFNKAQQDALL---PHVENGTIILIGATTENPSFELNPAL 151 (436)
T ss_pred ------------------HHHHHHHHhcCCceEEEEehhhhcChhhhhhhh---hhhcCCeEEEEeccCCCCCeeecHHH
Confidence 2222 2223589999999999776554544444 34446777777 7776431 112
Q ss_pred hCCCCcccCCCCCHHHHHHHHHHhhcCC-CCCC--CCcchHHHHHHHHHhcCCChHHH
Q 038637 354 TRAYPKYGLKELSDDDCLRVVIQHSLGA-TGFS--TNQSLKDVGEKIAKKCKGLPLAA 408 (962)
Q Consensus 354 ~~~~~~~~l~~L~~~~~~~Lf~~~a~~~-~~~~--~~~~~~~~~~~I~~~c~glPLai 408 (962)
..-..++.+++|+.++-.+++.+.+... .+.. ...-.++....|+..++|---++
T Consensus 152 lSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~a 209 (436)
T COG2256 152 LSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRA 209 (436)
T ss_pred hhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHH
Confidence 2344689999999999999998833221 1111 11123457777888888876443
No 38
>PRK06893 DNA replication initiation factor; Validated
Probab=98.63 E-value=3.7e-07 Score=93.98 Aligned_cols=156 Identities=17% Similarity=0.152 Sum_probs=96.4
Q ss_pred cEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCccHHHHHHHHHhHhCC
Q 038637 228 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSIANDQSNNDDDLNLLQEKLKKQLSG 307 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 307 (962)
.+.+.++|++|+|||+||+++++. .......+.|+.+.... ... ..+.+.+.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~y~~~~~~~---~~~----------------------~~~~~~~~- 90 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNH--YLLNQRTAIYIPLSKSQ---YFS----------------------PAVLENLE- 90 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEeeHHHhh---hhh----------------------HHHHhhcc-
Confidence 367899999999999999999984 33333445666653110 000 01111122
Q ss_pred ceEEEEEecCCCCC-ccchhh-ccCCCCCC-CCCcEEEEE-ecC---------hhhHhhhCCCCcccCCCCCHHHHHHHH
Q 038637 308 NKFLLVLDDVWNKN-YNYWSI-LSCPFGAG-APGSKIVVT-TRN---------LDVANLTRAYPKYGLKELSDDDCLRVV 374 (962)
Q Consensus 308 kr~LlVlDdv~~~~-~~~~~~-l~~~l~~~-~~gs~ilvT-tR~---------~~v~~~~~~~~~~~l~~L~~~~~~~Lf 374 (962)
+.-+||+||+|... ...|+. +...+... ..|+.+||+ +.. +++...+.....++++++++++.++++
T Consensus 91 ~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL 170 (229)
T PRK06893 91 QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVL 170 (229)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHH
Confidence 23489999998642 234553 22222211 245566554 443 356666666678999999999999999
Q ss_pred HHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHHHHHHhhh
Q 038637 375 IQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAAKTLGGLL 415 (962)
Q Consensus 375 ~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~~L 415 (962)
.++++... -.--+++..-|++.+.|..-.+..+-..|
T Consensus 171 ~~~a~~~~----l~l~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 171 QRNAYQRG----IELSDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHHcC----CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 99886432 12235778889999988776665544433
No 39
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.61 E-value=3.4e-08 Score=95.19 Aligned_cols=132 Identities=27% Similarity=0.309 Sum_probs=53.2
Q ss_pred ccccCCCCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCcccccccccCCCcCCeEeccCCCCcccccc
Q 038637 578 ESVCDVEHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPES 657 (962)
Q Consensus 578 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~ 657 (962)
+...+..++|.|.+.++. +. .+ ..+-..+.+|++|+|++| .+..++ .+..+++|+.|++++|.|+.+++.
T Consensus 13 ~~~~n~~~~~~L~L~~n~------I~-~I-e~L~~~l~~L~~L~Ls~N-~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~ 82 (175)
T PF14580_consen 13 AQYNNPVKLRELNLRGNQ------IS-TI-ENLGATLDKLEVLDLSNN-QITKLE-GLPGLPRLKTLDLSNNRISSISEG 82 (175)
T ss_dssp -------------------------------S--TT-TT--EEE-TTS---S--T-T----TT--EEE--SS---S-CHH
T ss_pred cccccccccccccccccc------cc-cc-cchhhhhcCCCEEECCCC-CCcccc-CccChhhhhhcccCCCCCCccccc
Confidence 334455667788777653 11 11 221125788999999999 788886 488899999999999999999766
Q ss_pred c-cccccCcEEeeCCCccccccc--hhcccCCCccEEecCCCCCccccCC----CCCCCCCCCccCCeEeC
Q 038637 658 I-NSLYNLHTILLENCWELKKLC--KDMGNLTKLRHLRNSDAGLLEEMPK----GFGKLTSLLTLGRFVVG 721 (962)
Q Consensus 658 i-~~L~~L~~L~L~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~~~p~----~i~~l~~L~~L~~~~~~ 721 (962)
+ ..+++|++|++++| .+..+- ..+..+++|++|++.+|+ ....+. -+..+++|+.|....+.
T Consensus 83 l~~~lp~L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V~ 151 (175)
T PF14580_consen 83 LDKNLPNLQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDVT 151 (175)
T ss_dssp HHHH-TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEETT
T ss_pred hHHhCCcCCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEEcc
Confidence 5 46999999999998 565442 246789999999999998 343333 25677888888665554
No 40
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.59 E-value=7.6e-07 Score=100.44 Aligned_cols=178 Identities=20% Similarity=0.241 Sum_probs=105.0
Q ss_pred CccccchhhHHH---HHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHH
Q 038637 201 AEVYGREKEEEE---IVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTK 277 (962)
Q Consensus 201 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 277 (962)
+++||++..+.. +..++... ....+.++|++|+||||||+.+++. ....| +.++.......-++
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~------~~~~ilL~GppGtGKTtLA~~ia~~--~~~~~-----~~l~a~~~~~~~ir 78 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAG------RLSSMILWGPPGTGKTTLARIIAGA--TDAPF-----EALSAVTSGVKDLR 78 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcC------CCceEEEECCCCCCHHHHHHHHHHH--hCCCE-----EEEecccccHHHHH
Confidence 458888877655 66666432 4567889999999999999999873 22222 22222111111112
Q ss_pred HHHHHhccCCCCCCccHHHHHHHHHhH-hCCceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEE--EecChh--hH-
Q 038637 278 SILKSIANDQSNNDDDLNLLQEKLKKQ-LSGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVV--TTRNLD--VA- 351 (962)
Q Consensus 278 ~il~~l~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv--TtR~~~--v~- 351 (962)
.++ +..... ..+++.+|++|+++.-.....+.+...+. .|..+++ ||.+.. +.
T Consensus 79 ~ii------------------~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~ 137 (413)
T PRK13342 79 EVI------------------EEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNP 137 (413)
T ss_pred HHH------------------HHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccH
Confidence 222 222111 24578899999998765555555554443 3444544 344322 11
Q ss_pred hhhCCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHHHHHHh
Q 038637 352 NLTRAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAAKTLGG 413 (962)
Q Consensus 352 ~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~ 413 (962)
....-...+.+.+++.++...++.+.+..... ...+...+....|++.|+|.|..+..+..
T Consensus 138 aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~-~~i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 138 ALLSRAQVFELKPLSEEDIEQLLKRALEDKER-GLVELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred HHhccceeeEeCCCCHHHHHHHHHHHHHHhhc-CCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 11222357899999999999999875432110 00123356788899999999976654443
No 41
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=2.9e-08 Score=104.42 Aligned_cols=211 Identities=22% Similarity=0.202 Sum_probs=114.8
Q ss_pred cCCCcCCeEeccCCCCccccc--cccccccCcEEeeCCCccc---cccchhcccCCCccEEecCCCCCccccCCCCCCCC
Q 038637 636 GNLKHLRCLNLSRTRIQILPE--SINSLYNLHTILLENCWEL---KKLCKDMGNLTKLRHLRNSDAGLLEEMPKGFGKLT 710 (962)
Q Consensus 636 ~~L~~Lr~L~Ls~~~i~~lp~--~i~~L~~L~~L~L~~~~~l---~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~ 710 (962)
.++..||...|.++.+...+. ....|++++.|||+.| .+ ..+-.-...|++|+.|+++.|.+ .. | ++..+
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nrl-~~-~--~~s~~ 192 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNRL-SN-F--ISSNT 192 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhh-hHHhHHHHHHHHHhcccchhcccccccc-cC-C--ccccc
Confidence 456667777777776665553 4556777777777776 22 22333346677777777777651 11 1 11000
Q ss_pred CCCccCCeEeCCCCCCCcccccCcccCCCeEEEeccCCCCChhhhhhhcCcCCcCCCceEEeccCCCCCCccchhhHHhh
Q 038637 711 SLLTLGRFVVGKDSGSGLRELKSLTHLQGTLRISKLENVEDVGDACEAQLNNKVNLRTLLLDWSARDVQNLDQCEFETRV 790 (962)
Q Consensus 711 ~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 790 (962)
+. . +.+|+.|.++.|+. + ..++
T Consensus 193 ---~~-----------------~-----------------------------l~~lK~L~l~~CGl-----s----~k~V 214 (505)
T KOG3207|consen 193 ---TL-----------------L-----------------------------LSHLKQLVLNSCGL-----S----WKDV 214 (505)
T ss_pred ---hh-----------------h-----------------------------hhhhheEEeccCCC-----C----HHHH
Confidence 00 1 12344444444441 1 1233
Q ss_pred hccCCCCCCcCeEEEeecCCCCCCcCcCCCCCCCccEEEEeCCCCCC--CCCCCCCCCCcCeEeecCCCCceEeCccccC
Q 038637 791 LSMLKPHRDVQELTIRGYGGTKFPIWLGDSSFSKLVNLKFGYCRMCT--SLPSVGQLPLLKHLKISGMDRVKSVGLEFYG 868 (962)
Q Consensus 791 ~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~--~l~~l~~lp~L~~L~L~~~~~~~~~~~~~~~ 868 (962)
...+..+|+|+.|.+.+|..... ......-+..|+.|+|++|.+.+ ..+..+.||.|+.|.++.|. +.++..--.+
T Consensus 215 ~~~~~~fPsl~~L~L~~N~~~~~-~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~ 292 (505)
T KOG3207|consen 215 QWILLTFPSLEVLYLEANEIILI-KATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIAEPDVE 292 (505)
T ss_pred HHHHHhCCcHHHhhhhcccccce-ecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccC-cchhcCCCcc
Confidence 33344567788888877742111 11111246678888888888763 34677888888888887653 3333211111
Q ss_pred C-CCCCCCCCcceeeccccccccccccccCCccccCcCCccceEeEccC
Q 038637 869 S-SCSVPFPSLETLSFSDMREWEEWISCGAGQEVDEVFPKLRKLSLFNC 916 (962)
Q Consensus 869 ~-~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~c 916 (962)
. .-...||+|++|++..+ +..+|.. .......++|+.|.+..+
T Consensus 293 s~~kt~~f~kL~~L~i~~N-~I~~w~s----l~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 293 SLDKTHTFPKLEYLNISEN-NIRDWRS----LNHLRTLENLKHLRITLN 336 (505)
T ss_pred chhhhcccccceeeecccC-ccccccc----cchhhccchhhhhhcccc
Confidence 0 01234888888888875 4555543 222445677777776543
No 42
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.47 E-value=9e-08 Score=108.42 Aligned_cols=181 Identities=27% Similarity=0.334 Sum_probs=127.2
Q ss_pred CCCCcccEEEeCCCcCcccccccccCCC-cCCeEeccCCCCccccccccccccCcEEeeCCCccccccchhcccCCCccE
Q 038637 612 NHLPRLRVFSLCGYCNIFNLPNEIGNLK-HLRCLNLSRTRIQILPESINSLYNLHTILLENCWELKKLCKDMGNLTKLRH 690 (962)
Q Consensus 612 ~~l~~Lr~L~L~~~~~~~~lp~~i~~L~-~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 690 (962)
..+..+..|++.++ .+..+|...+.+. +|++|++++|.+..+|..++.+++|+.|++++| .+..+|.....+++|+.
T Consensus 113 ~~~~~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 113 LELTNLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNN 190 (394)
T ss_pred hcccceeEEecCCc-ccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhhh
Confidence 44578999999998 7999998888885 999999999999999989999999999999999 88899887779999999
Q ss_pred EecCCCCCccccCCCCCCCCCCCccCCeEeCCCCCCCcccccCcccCCCeEEEeccCCCCChhhhhhhcCcCCcCCCceE
Q 038637 691 LRNSDAGLLEEMPKGFGKLTSLLTLGRFVVGKDSGSGLRELKSLTHLQGTLRISKLENVEDVGDACEAQLNNKVNLRTLL 770 (962)
Q Consensus 691 L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~ 770 (962)
|++++|. +..+|..++.+..|++|...... .+..+ ..+.++.++..|.
T Consensus 191 L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~-----~~~~~--------------------------~~~~~~~~l~~l~ 238 (394)
T COG4886 191 LDLSGNK-ISDLPPEIELLSALEELDLSNNS-----IIELL--------------------------SSLSNLKNLSGLE 238 (394)
T ss_pred eeccCCc-cccCchhhhhhhhhhhhhhcCCc-----ceecc--------------------------hhhhhcccccccc
Confidence 9999988 77888766566667666321110 00000 1112222233333
Q ss_pred EeccCCCCCCccchhhHHhhhccCCCCCCcCeEEEeecCCCCCCcCcCCCCCCCccEEEEeCCCCCCCCC
Q 038637 771 LDWSARDVQNLDQCEFETRVLSMLKPHRDVQELTIRGYGGTKFPIWLGDSSFSKLVNLKFGYCRMCTSLP 840 (962)
Q Consensus 771 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~ 840 (962)
+..+. ....+..+..+++++.|+++++.+..++. +. .+.+|+.|+++++.....+|
T Consensus 239 l~~n~-----------~~~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~--~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 239 LSNNK-----------LEDLPESIGNLSNLETLDLSNNQISSISS-LG--SLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred cCCce-----------eeeccchhccccccceecccccccccccc-cc--ccCccCEEeccCccccccch
Confidence 22222 01113455666778888888887777766 32 67778888888877766555
No 43
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.47 E-value=3.9e-06 Score=91.17 Aligned_cols=180 Identities=13% Similarity=0.200 Sum_probs=115.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCcc----chhcccceEEEEEe-CCCCCHHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDD----RVQRHFQFKAWACV-SEDFDVFRV 275 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~----~~~~~F~~~~wv~v-~~~~~~~~~ 275 (962)
.+++|.+..++.+..++.... -.....++|+.|+||||+|+.++... ....|.|...|... +......+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-----~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~- 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-----FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD- 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-
Confidence 458899999999999985432 34577899999999999999888731 12345665555442 22222222
Q ss_pred HHHHHHHhccCCCCCCccHHHHHHHHHhHhCCceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEEEecChhhH-h-h
Q 038637 276 TKSILKSIANDQSNNDDDLNLLQEKLKKQLSGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVVTTRNLDVA-N-L 353 (962)
Q Consensus 276 ~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~-~-~ 353 (962)
.+++.+.+...+ ..+++-++|+|++...+...++.+...+.....++.+|++|.+.+.. . .
T Consensus 78 ir~~~~~~~~~p-----------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI 140 (313)
T PRK05564 78 IRNIIEEVNKKP-----------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTI 140 (313)
T ss_pred HHHHHHHHhcCc-----------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHH
Confidence 223333332211 12455567777775555567888888887777788888888664321 1 1
Q ss_pred hCCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHHHHH
Q 038637 354 TRAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAAKTL 411 (962)
Q Consensus 354 ~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~ 411 (962)
..-...+.+.++++++....+.+.. .. ...+.+..++..++|.|.-+...
T Consensus 141 ~SRc~~~~~~~~~~~~~~~~l~~~~-~~-------~~~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 141 KSRCQIYKLNRLSKEEIEKFISYKY-ND-------IKEEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred HhhceeeeCCCcCHHHHHHHHHHHh-cC-------CCHHHHHHHHHHcCCCHHHHHHH
Confidence 2223578999999999988776542 11 11344778899999998755433
No 44
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.44 E-value=2.8e-07 Score=86.25 Aligned_cols=118 Identities=17% Similarity=0.209 Sum_probs=79.1
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchh---cccceEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCccHHHHHHHHHh
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQ---RHFQFKAWACVSEDFDVFRVTKSILKSIANDQSNNDDDLNLLQEKLKK 303 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~---~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~ 303 (962)
+.+++.|+|++|+|||++++.+.+..... ..-..++|+.+....+...+...|+.+++.... ...+...+.+.+.+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~-~~~~~~~l~~~~~~ 81 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLK-SRQTSDELRSLLID 81 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSS-STS-HHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCcccc-ccCCHHHHHHHHHH
Confidence 34789999999999999999998843111 013456799998888999999999999998765 34556666677777
Q ss_pred HhCCc-eEEEEEecCCCC-CccchhhccCCCCCCCCCcEEEEEecC
Q 038637 304 QLSGN-KFLLVLDDVWNK-NYNYWSILSCPFGAGAPGSKIVVTTRN 347 (962)
Q Consensus 304 ~l~~k-r~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTtR~ 347 (962)
.+... ..+||+|++..- +...++.+..... ..+.+||+..+.
T Consensus 82 ~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 82 ALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 77654 469999999553 3334444433222 566777777664
No 45
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.43 E-value=2.2e-06 Score=88.85 Aligned_cols=170 Identities=16% Similarity=0.140 Sum_probs=99.5
Q ss_pred chhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHhcc
Q 038637 206 REKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSIAN 285 (962)
Q Consensus 206 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~ 285 (962)
.+..++.+..++.. .....|.|+|++|+|||+||+.+++.. .......++++++.-.+. .
T Consensus 22 ~~~~~~~l~~~~~~------~~~~~lll~G~~G~GKT~la~~~~~~~--~~~~~~~~~i~~~~~~~~------~------ 81 (226)
T TIGR03420 22 NAELLAALRQLAAG------KGDRFLYLWGESGSGKSHLLQAACAAA--EERGKSAIYLPLAELAQA------D------ 81 (226)
T ss_pred cHHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHHH--HhcCCcEEEEeHHHHHHh------H------
Confidence 44566777776532 245788999999999999999998742 223334456654332110 0
Q ss_pred CCCCCCccHHHHHHHHHhHhCCceEEEEEecCCCCCcc-ch-hhccCCCCC-CCCCcEEEEEecChh---------hHhh
Q 038637 286 DQSNNDDDLNLLQEKLKKQLSGNKFLLVLDDVWNKNYN-YW-SILSCPFGA-GAPGSKIVVTTRNLD---------VANL 353 (962)
Q Consensus 286 ~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~-~~-~~l~~~l~~-~~~gs~ilvTtR~~~---------v~~~ 353 (962)
. .+...+.+ .-+||+||+..-... .| +.+...+.. ...+.++|+||+... +...
T Consensus 82 ---------~----~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r 147 (226)
T TIGR03420 82 ---------P----EVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTR 147 (226)
T ss_pred ---------H----HHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHH
Confidence 0 01111222 238999999653321 22 223332221 123457888887532 2222
Q ss_pred hCCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHHHHHHh
Q 038637 354 TRAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAAKTLGG 413 (962)
Q Consensus 354 ~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~ 413 (962)
+.....+++.++++++...++...+-.. + -+--++..+.|++.+.|.|..+.-+..
T Consensus 148 ~~~~~~i~l~~l~~~e~~~~l~~~~~~~-~---~~~~~~~l~~L~~~~~gn~r~L~~~l~ 203 (226)
T TIGR03420 148 LAWGLVFQLPPLSDEEKIAALQSRAARR-G---LQLPDEVADYLLRHGSRDMGSLMALLD 203 (226)
T ss_pred HhcCeeEecCCCCHHHHHHHHHHHHHHc-C---CCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 2223568999999999999988754321 1 122346678888889999887766543
No 46
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.43 E-value=2.7e-06 Score=87.44 Aligned_cols=158 Identities=19% Similarity=0.232 Sum_probs=99.2
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCccHHHHHHHHHhHh
Q 038637 226 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSIANDQSNNDDDLNLLQEKLKKQL 305 (962)
Q Consensus 226 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 305 (962)
+....+.+||++|.||||||+.+....+... ..||..|....-..-.+.|+++.... ..+
T Consensus 160 ~~ipSmIlWGppG~GKTtlArlia~tsk~~S----yrfvelSAt~a~t~dvR~ife~aq~~----------------~~l 219 (554)
T KOG2028|consen 160 NRIPSMILWGPPGTGKTTLARLIASTSKKHS----YRFVELSATNAKTNDVRDIFEQAQNE----------------KSL 219 (554)
T ss_pred CCCCceEEecCCCCchHHHHHHHHhhcCCCc----eEEEEEeccccchHHHHHHHHHHHHH----------------Hhh
Confidence 3677888999999999999999998543322 44666666544444445554443221 124
Q ss_pred CCceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEE--EecChhh---HhhhCCCCcccCCCCCHHHHHHHHHHhhc-
Q 038637 306 SGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVV--TTRNLDV---ANLTRAYPKYGLKELSDDDCLRVVIQHSL- 379 (962)
Q Consensus 306 ~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv--TtR~~~v---~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~- 379 (962)
.++|.+|++|.|..-+..+.+.+ +|...+|+-++| ||.+... +.......++.+++|..++-..++.+..-
T Consensus 220 ~krkTilFiDEiHRFNksQQD~f---LP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~ 296 (554)
T KOG2028|consen 220 TKRKTILFIDEIHRFNKSQQDTF---LPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIAS 296 (554)
T ss_pred hcceeEEEeHHhhhhhhhhhhcc---cceeccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHh
Confidence 67899999999966443333333 455567877776 7776532 22234456799999999998888877332
Q ss_pred -CC-CC---CCCCc---chHHHHHHHHHhcCCChH
Q 038637 380 -GA-TG---FSTNQ---SLKDVGEKIAKKCKGLPL 406 (962)
Q Consensus 380 -~~-~~---~~~~~---~~~~~~~~I~~~c~glPL 406 (962)
+. +. .-+++ ....+..-++..|.|-.-
T Consensus 297 l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 297 LGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred hccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 11 11 11221 234567777778888653
No 47
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=5.8e-06 Score=91.47 Aligned_cols=197 Identities=14% Similarity=0.135 Sum_probs=107.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSIL 280 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 280 (962)
.+++|.+..++.+.+.+.... -...+.++|+.|+||||+|+.++............ .+.......++.....
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~~-----~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~---pc~~c~~c~~~~~~~~ 87 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLGR-----IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSN---PCRKCIICKEIEKGLC 87 (363)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCC---CCCCCHHHHHHhcCCC
Confidence 468999999999998885432 24567899999999999999998632110000000 0000000000000000
Q ss_pred HHhc-cCCC--CCCccHHHHHHHHHhH-hCCceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEEEecCh-hhHhh-h
Q 038637 281 KSIA-NDQS--NNDDDLNLLQEKLKKQ-LSGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVVTTRNL-DVANL-T 354 (962)
Q Consensus 281 ~~l~-~~~~--~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~-~ 354 (962)
-.+. .+.. ....+...+.+.+... ..+++-++|+|++...+...++.+...+.......++|++|.+. .+... .
T Consensus 88 ~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~ 167 (363)
T PRK14961 88 LDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTIL 167 (363)
T ss_pred CceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHH
Confidence 0000 0000 0111112222221111 12455699999996655455666666665544566677766543 33222 2
Q ss_pred CCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHHH
Q 038637 355 RAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAAK 409 (962)
Q Consensus 355 ~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~ 409 (962)
+....+++.+++.++..+.+...+-... ....++.+..|++.++|.|-.+.
T Consensus 168 SRc~~~~~~~l~~~el~~~L~~~~~~~g----~~i~~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 168 SRCLQFKLKIISEEKIFNFLKYILIKES----IDTDEYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred hhceEEeCCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHH
Confidence 2235789999999999988877653221 11234667889999999885433
No 48
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.41 E-value=7e-06 Score=94.70 Aligned_cols=199 Identities=12% Similarity=0.120 Sum_probs=111.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSIL 280 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 280 (962)
+++||.+..++.|.+++.... -...+.++|..|+||||+|+.+.+...-...++ +..++.+.+...+...-.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-----L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~---~~PCG~C~sCr~I~~G~h 87 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVT---SQPCGVCRACREIDEGRF 87 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCC---CCCCcccHHHHHHhcCCC
Confidence 569999999999999985432 235567999999999999998876321111000 000111101111100000
Q ss_pred -HHhccCCCCCCccHHHHHHHHHhH----hCCceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEEEecChh-hHh-h
Q 038637 281 -KSIANDQSNNDDDLNLLQEKLKKQ----LSGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVVTTRNLD-VAN-L 353 (962)
Q Consensus 281 -~~l~~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~-~ 353 (962)
.-+..+.. .....+++.+.+... ..++.-++|||++...+...|..++..+.......++|+||.+.. +.. .
T Consensus 88 ~DviEIDAa-s~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TI 166 (830)
T PRK07003 88 VDYVEMDAA-SNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTV 166 (830)
T ss_pred ceEEEeccc-ccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchh
Confidence 00000000 011122222222211 124555888999977666667777666655456778777777632 221 1
Q ss_pred hCCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCCh-HHHHHHH
Q 038637 354 TRAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLP-LAAKTLG 412 (962)
Q Consensus 354 ~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glP-Lai~~~~ 412 (962)
..-...+.++.++.++..+.+.+.+-. ++ -....+....|++.++|.. -|+.++-
T Consensus 167 rSRCq~f~Fk~Ls~eeIv~~L~~Il~~-Eg---I~id~eAL~lIA~~A~GsmRdALsLLd 222 (830)
T PRK07003 167 LSRCLQFNLKQMPAGHIVSHLERILGE-ER---IAFEPQALRLLARAAQGSMRDALSLTD 222 (830)
T ss_pred hhheEEEecCCcCHHHHHHHHHHHHHH-cC---CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 222357999999999999988776422 11 1223567888999999865 4555533
No 49
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.40 E-value=1.2e-08 Score=110.61 Aligned_cols=191 Identities=23% Similarity=0.275 Sum_probs=114.4
Q ss_pred EEEeCCCcCcccccccccCCCcCCeEeccCCCCccccccccccccCcEEeeCCCccccccchhcccCCCccEEecCCCCC
Q 038637 619 VFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLENCWELKKLCKDMGNLTKLRHLRNSDAGL 698 (962)
Q Consensus 619 ~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~ 698 (962)
..||+.| ....+|..++.+..|..|.|..|.+..+|..+++|..|.+|||+.| .+..+|..+..|+ |+.|-+++|.
T Consensus 79 ~aDlsrN-R~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~sNNk- 154 (722)
T KOG0532|consen 79 FADLSRN-RFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLIVSNNK- 154 (722)
T ss_pred hhhcccc-ccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEEEecCc-
Confidence 3455555 4555555555555555566655555566666666666666666555 5555555555544 5555555544
Q ss_pred ccccCCCCCCCCCCCccCCeEeCCCCCCCcccccCcccCCCeEEEeccCCCCChhhhhhhcCcCCcCCCceEEeccCCCC
Q 038637 699 LEEMPKGFGKLTSLLTLGRFVVGKDSGSGLRELKSLTHLQGTLRISKLENVEDVGDACEAQLNNKVNLRTLLLDWSARDV 778 (962)
Q Consensus 699 ~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 778 (962)
++.+|..++-+..| ..|+.+.|.
T Consensus 155 l~~lp~~ig~~~tl------------------------------------------------------~~ld~s~ne--- 177 (722)
T KOG0532|consen 155 LTSLPEEIGLLPTL------------------------------------------------------AHLDVSKNE--- 177 (722)
T ss_pred cccCCcccccchhH------------------------------------------------------HHhhhhhhh---
Confidence 45555555422222 222222222
Q ss_pred CCccchhhHHhhhccCCCCCCcCeEEEeecCCCCCCcCcCCCCCCCccEEEEeCCCCCCCCC-CCCCCCCcCeEeecCCC
Q 038637 779 QNLDQCEFETRVLSMLKPHRDVQELTIRGYGGTKFPIWLGDSSFSKLVNLKFGYCRMCTSLP-SVGQLPLLKHLKISGMD 857 (962)
Q Consensus 779 ~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L~~L~L~~~~ 857 (962)
....+..++.+.+|+.|.+..|....+|..+. .| .|..|+++.|+.. .+| .+.+|..|++|.|.+|+
T Consensus 178 --------i~slpsql~~l~slr~l~vrRn~l~~lp~El~--~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 178 --------IQSLPSQLGYLTSLRDLNVRRNHLEDLPEELC--SL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred --------hhhchHHhhhHHHHHHHHHhhhhhhhCCHHHh--CC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCC
Confidence 22445567778889999999999999998875 44 4899999888765 466 78899999999999876
Q ss_pred CceEeCccccCCCCCCCCCCcceeecccc
Q 038637 858 RVKSVGLEFYGSSCSVPFPSLETLSFSDM 886 (962)
Q Consensus 858 ~~~~~~~~~~~~~~~~~f~~L~~L~l~~~ 886 (962)
+.+-+..++-.+- .--.|+|+..-|
T Consensus 246 -LqSPPAqIC~kGk---VHIFKyL~~qA~ 270 (722)
T KOG0532|consen 246 -LQSPPAQICEKGK---VHIFKYLSTQAC 270 (722)
T ss_pred -CCCChHHHHhccc---eeeeeeecchhc
Confidence 3444444333221 122355555554
No 50
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.39 E-value=1.4e-08 Score=109.86 Aligned_cols=106 Identities=30% Similarity=0.463 Sum_probs=93.5
Q ss_pred CcchhhhCCCCcccEEEeCCCcCcccccccccCCCcCCeEeccCCCCccccccccccccCcEEeeCCCccccccchhccc
Q 038637 605 SVPHMLLNHLPRLRVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLENCWELKKLCKDMGN 684 (962)
Q Consensus 605 ~~~~~~l~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~ 684 (962)
.+|.. +..|-.|..|.|..| .+..+|..++++..|.||||+.|.++.+|..++.|+ |+.|-+++| +++.+|..++.
T Consensus 89 elp~~-~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~ 164 (722)
T KOG0532|consen 89 ELPEE-ACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN-KLTSLPEEIGL 164 (722)
T ss_pred cCchH-HHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC-ccccCCccccc
Confidence 34544 456778888999888 688899999999999999999999999999999876 999999998 89999999999
Q ss_pred CCCccEEecCCCCCccccCCCCCCCCCCCcc
Q 038637 685 LTKLRHLRNSDAGLLEEMPKGFGKLTSLLTL 715 (962)
Q Consensus 685 L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 715 (962)
+..|.+|+.+.|. +..+|..++.+.+|+.|
T Consensus 165 ~~tl~~ld~s~ne-i~slpsql~~l~slr~l 194 (722)
T KOG0532|consen 165 LPTLAHLDVSKNE-IQSLPSQLGYLTSLRDL 194 (722)
T ss_pred chhHHHhhhhhhh-hhhchHHhhhHHHHHHH
Confidence 9999999999998 78888888888888777
No 51
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.38 E-value=3.7e-06 Score=93.03 Aligned_cols=199 Identities=15% Similarity=0.114 Sum_probs=105.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccc-eEEEEEeCCCCCH-HHHHH-
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQ-FKAWACVSEDFDV-FRVTK- 277 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~-~~~wv~v~~~~~~-~~~~~- 277 (962)
++++|++..++.+..++... ..+.+.++|++|+||||+|+.+.+... ...+. ..+.++++.-.+. ...+.
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~GtGKT~la~~~~~~l~-~~~~~~~~~~i~~~~~~~~~~~~~~~ 87 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP------NLPHLLVQGPPGSGKTAAVRALARELY-GDPWENNFTEFNVADFFDQGKKYLVE 87 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhc-CcccccceEEechhhhhhcchhhhhc
Confidence 45889999999999888533 345688999999999999999887321 11122 1234443321100 00000
Q ss_pred --HHHHHhccCCCCCCccHHHHHHHHHhH---h--CCceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEEEecCh-h
Q 038637 278 --SILKSIANDQSNNDDDLNLLQEKLKKQ---L--SGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVVTTRNL-D 349 (962)
Q Consensus 278 --~il~~l~~~~~~~~~~~~~~~~~l~~~---l--~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~ 349 (962)
.....+...........+.....++.. . .+.+-+||+||+..-.......+...+......+++|+||... .
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~ 167 (337)
T PRK12402 88 DPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSK 167 (337)
T ss_pred CcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhh
Confidence 000000000000001112222222211 1 2344589999995543333334443333333456777777542 2
Q ss_pred hHhh-hCCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHHHH
Q 038637 350 VANL-TRAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAAKT 410 (962)
Q Consensus 350 v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~ 410 (962)
+... ......+.+.+++.++...++.+.+-.. +. .-..+....|++.++|.+-.+..
T Consensus 168 ~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~-~~---~~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 168 LIPPIRSRCLPLFFRAPTDDELVDVLESIAEAE-GV---DYDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred CchhhcCCceEEEecCCCHHHHHHHHHHHHHHc-CC---CCCHHHHHHHHHHcCCCHHHHHH
Confidence 2221 1223467889999999988888765322 11 12356788899999887655433
No 52
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.38 E-value=7.6e-07 Score=89.04 Aligned_cols=48 Identities=27% Similarity=0.385 Sum_probs=32.6
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCcc
Q 038637 202 EVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDD 252 (962)
Q Consensus 202 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 252 (962)
.||||+++++++...|. .. .....+.+.|+|++|+|||+|.++++...
T Consensus 1 ~fvgR~~e~~~l~~~l~-~~--~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLD-AA--QSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp --TT-HHHHHHHHHTTG-GT--SS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH-HH--HcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999995 22 23467999999999999999999998843
No 53
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.35 E-value=7.4e-07 Score=91.76 Aligned_cols=91 Identities=19% Similarity=0.172 Sum_probs=63.0
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCC--CCHHHHHHHHHHHhccCCCCCCcc-----HHHHHH
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSED--FDVFRVTKSILKSIANDQSNNDDD-----LNLLQE 299 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~--~~~~~~~~~il~~l~~~~~~~~~~-----~~~~~~ 299 (962)
....+.|+|++|+|||||++.++++.... +|+..+|+.+... ++..++++.+...+-......... .....+
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~-~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKN-HPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccc-cCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 44678999999999999999999975444 8999999997776 799999999844433222211111 112222
Q ss_pred HHHhH-hCCceEEEEEecCC
Q 038637 300 KLKKQ-LSGNKFLLVLDDVW 318 (962)
Q Consensus 300 ~l~~~-l~~kr~LlVlDdv~ 318 (962)
..... -.+++.++++|++.
T Consensus 94 ~a~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSIT 113 (249)
T ss_pred HHHHHHHCCCCEEEEEECHH
Confidence 22222 25899999999994
No 54
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=6.9e-06 Score=93.72 Aligned_cols=181 Identities=15% Similarity=0.125 Sum_probs=108.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhc-------------------ccceE
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQR-------------------HFQFK 261 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~F~~~ 261 (962)
.++||.+..++.|..++.... -...+.++|+.|+||||+|+.+++...-.. .|...
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-----l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDv 89 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-----LHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDL 89 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCce
Confidence 569999999999999996443 246779999999999999998876321100 01111
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhccCCCCCCccHHHHHHHHHh-HhCCceEEEEEecCCCCCccchhhccCCCCCCCCCcE
Q 038637 262 AWACVSEDFDVFRVTKSILKSIANDQSNNDDDLNLLQEKLKK-QLSGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSK 340 (962)
Q Consensus 262 ~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 340 (962)
+.++.+... ...+...+.+.+.. -..++.-++|+|++..-+......+...+.....+.+
T Consensus 90 iEIDAAs~~-------------------~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~ 150 (702)
T PRK14960 90 IEIDAASRT-------------------KVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVK 150 (702)
T ss_pred EEecccccC-------------------CHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcE
Confidence 111111110 11111222222111 1235666899999976555556666655554445667
Q ss_pred EEEEecCh-hhH-hhhCCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHHH
Q 038637 341 IVVTTRNL-DVA-NLTRAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAAK 409 (962)
Q Consensus 341 ilvTtR~~-~v~-~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~ 409 (962)
+|++|.+. .+. ........+++++++.++..+.+.+.+-.. + .....+....|++.++|.+-.+.
T Consensus 151 FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kE-g---I~id~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 151 FLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKE-Q---IAADQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred EEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHc-C---CCCCHHHHHHHHHHcCCCHHHHH
Confidence 77777653 222 112334679999999999998887765321 1 12235667889999999885443
No 55
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.34 E-value=1.8e-08 Score=105.29 Aligned_cols=287 Identities=17% Similarity=0.145 Sum_probs=139.7
Q ss_pred cccEEEeCCCcCccccc--ccccCCCcCCeEeccCCC-Cc--cccccccccccCcEEeeCCCccccccch--hcccCCCc
Q 038637 616 RLRVFSLCGYCNIFNLP--NEIGNLKHLRCLNLSRTR-IQ--ILPESINSLYNLHTILLENCWELKKLCK--DMGNLTKL 688 (962)
Q Consensus 616 ~Lr~L~L~~~~~~~~lp--~~i~~L~~Lr~L~Ls~~~-i~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L 688 (962)
.|+.|.+.|+.....-+ ....+++++..|++.++. ++ .+-+.-..+++|++|++..|..+....- -...+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 58888898885443322 334567788888888765 22 1212223688899999988866654321 23567888
Q ss_pred cEEecCCCCCccccCCCCCCCCCCCccCCeEeCCCCCCCcccccCcccCCCeEEEeccCCCCChhhhhhhcCcCCcCCCc
Q 038637 689 RHLRNSDAGLLEEMPKGFGKLTSLLTLGRFVVGKDSGSGLRELKSLTHLQGTLRISKLENVEDVGDACEAQLNNKVNLRT 768 (962)
Q Consensus 689 ~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~ 768 (962)
.+|+++.|.-+.. .+++.+. ....++. ++...++... ..+++...-..+..+..
T Consensus 219 ~~lNlSwc~qi~~--------~gv~~~~------------rG~~~l~----~~~~kGC~e~--~le~l~~~~~~~~~i~~ 272 (483)
T KOG4341|consen 219 KYLNLSWCPQISG--------NGVQALQ------------RGCKELE----KLSLKGCLEL--ELEALLKAAAYCLEILK 272 (483)
T ss_pred HHhhhccCchhhc--------CcchHHh------------ccchhhh----hhhhcccccc--cHHHHHHHhccChHhhc
Confidence 9998888762221 1222221 0111111 1111111110 01111111112222333
Q ss_pred eEEeccCCCCCCccchhhHHhhhccCCCCCCcCeEEEeecC-CCCCCcCcCCCCCCCccEEEEeCCCCCCCC--CCCC-C
Q 038637 769 LLLDWSARDVQNLDQCEFETRVLSMLKPHRDVQELTIRGYG-GTKFPIWLGDSSFSKLVNLKFGYCRMCTSL--PSVG-Q 844 (962)
Q Consensus 769 L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l--~~l~-~ 844 (962)
+++..+. .+.+ ..+...-..+..|+.|..+++. +...+-|--....++|+.|.+..|+..... ..++ +
T Consensus 273 lnl~~c~-~lTD-------~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn 344 (483)
T KOG4341|consen 273 LNLQHCN-QLTD-------EDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRN 344 (483)
T ss_pred cchhhhc-cccc-------hHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcC
Confidence 3333332 1111 1122222345566777666653 222333322235677777777777754322 2333 5
Q ss_pred CCCcCeEeecCCCCceEeCccccCCCCCCCCCCcceeeccccccccccccccCCccccCcCCccceEeEccCCCccccCC
Q 038637 845 LPLLKHLKISGMDRVKSVGLEFYGSSCSVPFPSLETLSFSDMREWEEWISCGAGQEVDEVFPKLRKLSLFNCYKLQGTLP 924 (962)
Q Consensus 845 lp~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~lp 924 (962)
.+.|+.+++.+|..+..- ++.. -...+|.|+.|.+++|...++-..- ........+..|+.|.+.+||.++...-
T Consensus 345 ~~~Le~l~~e~~~~~~d~--tL~s--ls~~C~~lr~lslshce~itD~gi~-~l~~~~c~~~~l~~lEL~n~p~i~d~~L 419 (483)
T KOG4341|consen 345 CPHLERLDLEECGLITDG--TLAS--LSRNCPRLRVLSLSHCELITDEGIR-HLSSSSCSLEGLEVLELDNCPLITDATL 419 (483)
T ss_pred Chhhhhhcccccceehhh--hHhh--hccCCchhccCChhhhhhhhhhhhh-hhhhccccccccceeeecCCCCchHHHH
Confidence 667777777666432211 1111 1223677777777765543332100 0000122456677777777776653332
Q ss_pred ---CCCCCcceEEEccccCc
Q 038637 925 ---KRLLLLEKLVIKSCHRL 941 (962)
Q Consensus 925 ---~~l~~L~~L~i~~c~~l 941 (962)
...++|+.+++.+|..+
T Consensus 420 e~l~~c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 420 EHLSICRNLERIELIDCQDV 439 (483)
T ss_pred HHHhhCcccceeeeechhhh
Confidence 23467777777777765
No 56
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.34 E-value=6.3e-06 Score=96.98 Aligned_cols=199 Identities=15% Similarity=0.131 Sum_probs=111.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHH---
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTK--- 277 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~--- 277 (962)
.++||.+..++.|.+++.... -...+.++|+.|+||||+|+.+++...-....... .|.....-..+..
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r-----l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~---pCg~C~sC~~i~~g~~ 87 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR-----LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTAT---PCGVCSSCVEIAQGRF 87 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCC---CCCCchHHHHHhcCCC
Confidence 569999999999999885432 23445899999999999999998742111000000 0000000000000
Q ss_pred HHHHHhccCCCCCCccHHHHHHHHHh-HhCCceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEEEecC-hhhHhh-h
Q 038637 278 SILKSIANDQSNNDDDLNLLQEKLKK-QLSGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVVTTRN-LDVANL-T 354 (962)
Q Consensus 278 ~il~~l~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~~~-~ 354 (962)
..+..+.........+..++.+.+.. -..+++-++|+|++...+....+.++..+.......++|++|.+ ..+... .
T Consensus 88 ~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIl 167 (944)
T PRK14949 88 VDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVL 167 (944)
T ss_pred ceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHH
Confidence 00000000000011222233322221 12467779999999776666677776666554455666655544 433322 2
Q ss_pred CCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHHHHH
Q 038637 355 RAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAAKTL 411 (962)
Q Consensus 355 ~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~ 411 (962)
.....|++++|+.++..+.+.+.+-.. + .....+....|++.++|.|--+..+
T Consensus 168 SRCq~f~fkpLs~eEI~~~L~~il~~E-g---I~~edeAL~lIA~~S~Gd~R~ALnL 220 (944)
T PRK14949 168 SRCLQFNLKSLTQDEIGTQLNHILTQE-Q---LPFEAEALTLLAKAANGSMRDALSL 220 (944)
T ss_pred HhheEEeCCCCCHHHHHHHHHHHHHHc-C---CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 223679999999999999887755321 1 1223567888999999988544333
No 57
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.33 E-value=9.6e-06 Score=95.39 Aligned_cols=202 Identities=21% Similarity=0.208 Sum_probs=118.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccc---eEEEEEeCC---CCCHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQ---FKAWACVSE---DFDVFR 274 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~---~~~wv~v~~---~~~~~~ 274 (962)
++++|++..+..+...+... ....+.|+|++|+||||||+.+++.......++ ..-|+.+.. ..+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~ 227 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASP------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPRE 227 (615)
T ss_pred HhceeCcHHHHHHHHHHhcC------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHH
Confidence 35889999999888877432 345799999999999999999987543322221 233544432 122222
Q ss_pred HHHHH---------------HHHhccCCC---------C------CCc-cHHHHHHHHHhHhCCceEEEEEecCCCCCcc
Q 038637 275 VTKSI---------------LKSIANDQS---------N------NDD-DLNLLQEKLKKQLSGNKFLLVLDDVWNKNYN 323 (962)
Q Consensus 275 ~~~~i---------------l~~l~~~~~---------~------~~~-~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~ 323 (962)
+...+ +...+.... . +.. -....+..+.+.++++++.++-|+.|..+..
T Consensus 228 i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~ 307 (615)
T TIGR02903 228 VTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPN 307 (615)
T ss_pred HhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcc
Confidence 21111 121111100 0 000 1133577888899999999998888877777
Q ss_pred chhhccCCCCCCCCCcEEEE--EecChh-hHhhh-CCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHH
Q 038637 324 YWSILSCPFGAGAPGSKIVV--TTRNLD-VANLT-RAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAK 399 (962)
Q Consensus 324 ~~~~l~~~l~~~~~gs~ilv--TtR~~~-v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~ 399 (962)
.|+.+...+....+...|++ ||++.. +...+ .....+.+.+++.+|.+.++.+.+-.. +.. -..++...|.+
T Consensus 308 ~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~-~v~---ls~eal~~L~~ 383 (615)
T TIGR02903 308 VPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKI-NVH---LAAGVEELIAR 383 (615)
T ss_pred cchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHc-CCC---CCHHHHHHHHH
Confidence 78888777766655555555 566532 11111 122357789999999999998865321 111 11344444555
Q ss_pred hcCCChHHHHHHH
Q 038637 400 KCKGLPLAAKTLG 412 (962)
Q Consensus 400 ~c~glPLai~~~~ 412 (962)
.+..-+-|+..++
T Consensus 384 ys~~gRraln~L~ 396 (615)
T TIGR02903 384 YTIEGRKAVNILA 396 (615)
T ss_pred CCCcHHHHHHHHH
Confidence 4443344554444
No 58
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=1.6e-06 Score=98.99 Aligned_cols=195 Identities=17% Similarity=0.174 Sum_probs=111.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHH--
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKS-- 278 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~-- 278 (962)
.+++|.+..++.|..++.... -...+.++|++|+||||+|+.+++.....+.+....|.|.+- ..+...
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~-----l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc----~~i~~~~h 84 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGR-----LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESC----LAVRRGAH 84 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhh----HHHhcCCC
Confidence 458999999999988886532 235569999999999999999987432212222222322211 000000
Q ss_pred -HHHHhccCCCCCCccHHHHHHHHHh-HhCCceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEEEec-ChhhHhhh-
Q 038637 279 -ILKSIANDQSNNDDDLNLLQEKLKK-QLSGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVVTTR-NLDVANLT- 354 (962)
Q Consensus 279 -il~~l~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR-~~~v~~~~- 354 (962)
-+..+.........+..++.+.+.. -..+++-++|+|+++..+...+..+...+........+|++|. ...+...+
T Consensus 85 ~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~ 164 (504)
T PRK14963 85 PDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTIL 164 (504)
T ss_pred CceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHh
Confidence 0000010000011122222222221 1234666899999977665667777666655444555555554 33333222
Q ss_pred CCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHH
Q 038637 355 RAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAA 408 (962)
Q Consensus 355 ~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai 408 (962)
.....+++.+++.++....+.+.+-..+ . ....+....|++.++|.+--+
T Consensus 165 SRc~~~~f~~ls~~el~~~L~~i~~~eg-i---~i~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 165 SRTQHFRFRRLTEEEIAGKLRRLLEAEG-R---EAEPEALQLVARLADGAMRDA 214 (504)
T ss_pred cceEEEEecCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCCHHHH
Confidence 2345799999999999999988764321 1 123567888999999988544
No 59
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=2.4e-05 Score=85.51 Aligned_cols=205 Identities=15% Similarity=0.135 Sum_probs=127.1
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccc--eEEEEEeCCCCCHHHHHHHH
Q 038637 202 EVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQ--FKAWACVSEDFDVFRVTKSI 279 (962)
Q Consensus 202 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~--~~~wv~v~~~~~~~~~~~~i 279 (962)
.+.+|+.+++++...|...-. +....-+.|+|..|.|||+.++.|.+. +..... ..++|++-...+..+++..|
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~--~~~p~n~~iyG~~GTGKT~~~~~v~~~--l~~~~~~~~~~yINc~~~~t~~~i~~~i 93 (366)
T COG1474 18 ELPHREEEINQLASFLAPALR--GERPSNIIIYGPTGTGKTATVKFVMEE--LEESSANVEVVYINCLELRTPYQVLSKI 93 (366)
T ss_pred cccccHHHHHHHHHHHHHHhc--CCCCccEEEECCCCCCHhHHHHHHHHH--HHhhhccCceEEEeeeeCCCHHHHHHHH
Confidence 388999999999998876543 223334899999999999999999984 333322 26899999999999999999
Q ss_pred HHHhccCCCCCCccHHHHHHHHHhHhC--CceEEEEEecCCCCCccchhhccCCCCCCC-CCcEEE--EEecChhhHhh-
Q 038637 280 LKSIANDQSNNDDDLNLLQEKLKKQLS--GNKFLLVLDDVWNKNYNYWSILSCPFGAGA-PGSKIV--VTTRNLDVANL- 353 (962)
Q Consensus 280 l~~l~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-~gs~il--vTtR~~~v~~~- 353 (962)
+.+++.... ......+..+.+.+.+. ++.+++|||++..--...-+.+-..+.... ..++|+ ..+-+......
T Consensus 94 ~~~~~~~p~-~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~l 172 (366)
T COG1474 94 LNKLGKVPL-TGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYL 172 (366)
T ss_pred HHHcCCCCC-CCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHh
Confidence 999984443 44555566666766664 588999999994321111012211122111 245443 33433332222
Q ss_pred -------hCCCCcccCCCCCHHHHHHHHHHhhcCCC-CCCCCcchHHHHHHHHHhcC-CChHHHHHHH
Q 038637 354 -------TRAYPKYGLKELSDDDCLRVVIQHSLGAT-GFSTNQSLKDVGEKIAKKCK-GLPLAAKTLG 412 (962)
Q Consensus 354 -------~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~-~~~~~~~~~~~~~~I~~~c~-glPLai~~~~ 412 (962)
.+. ..+..++-+.+|-.+++..++-..- .....+..-+....++..-+ -.=.||.++-
T Consensus 173 d~rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr 239 (366)
T COG1474 173 DPRVKSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILR 239 (366)
T ss_pred hhhhhhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHH
Confidence 222 2377899999999999998874321 11223333333444444444 4445555444
No 60
>PF13173 AAA_14: AAA domain
Probab=98.30 E-value=7.4e-07 Score=82.70 Aligned_cols=120 Identities=20% Similarity=0.160 Sum_probs=75.9
Q ss_pred cEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCccHHHHHHHHHhHhCC
Q 038637 228 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSIANDQSNNDDDLNLLQEKLKKQLSG 307 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 307 (962)
-+++.|.|+.|+|||||+++++.+.. .....++++..+....... +.+ +.+.+.+....
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~-----------------~~~-~~~~~~~~~~~ 60 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLA-----------------DPD-LLEYFLELIKP 60 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHh-----------------hhh-hHHHHHHhhcc
Confidence 36899999999999999999987432 2344566655443221000 000 22334443444
Q ss_pred ceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEEEecChhhHhhh------CCCCcccCCCCCHHHH
Q 038637 308 NKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVVTTRNLDVANLT------RAYPKYGLKELSDDDC 370 (962)
Q Consensus 308 kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~------~~~~~~~l~~L~~~~~ 370 (962)
++.+|+||++... ..|......+.+..+..+|++|+........- +....+++.||+-.|.
T Consensus 61 ~~~~i~iDEiq~~--~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 61 GKKYIFIDEIQYL--PDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred CCcEEEEehhhhh--ccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 7888999999543 56777766666555678999999886554321 1223578888887663
No 61
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=1e-05 Score=92.20 Aligned_cols=200 Identities=14% Similarity=0.125 Sum_probs=109.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhc---ccceEEEEEeCCCCCHHHHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQR---HFQFKAWACVSEDFDVFRVTK 277 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---~F~~~~wv~v~~~~~~~~~~~ 277 (962)
.++||.+..++.|.+++.... -...+.++|+.|+||||+|+.+.+...-.. ... ...-.++...+-..+..
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-----LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g-~~~~PCG~C~sC~~I~a 89 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-----LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGG-ITAQPCGQCRACTEIDA 89 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCcccccc-CCCCCCcccHHHHHHHc
Confidence 569999999999999996543 235668999999999999998876321100 000 00000000000000000
Q ss_pred ----HHHHHhccCCCCCCccHHHHHHHHHhH-hCCceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEE-EecChhhH
Q 038637 278 ----SILKSIANDQSNNDDDLNLLQEKLKKQ-LSGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVV-TTRNLDVA 351 (962)
Q Consensus 278 ----~il~~l~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-TtR~~~v~ 351 (962)
+++ .+........++..++.+.+... ..++.-++|+|++...+...++.+...+.....+.++|+ ||....+.
T Consensus 90 G~hpDvi-EIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLl 168 (700)
T PRK12323 90 GRFVDYI-EMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIP 168 (700)
T ss_pred CCCCcce-EecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhh
Confidence 000 00000000111122222222111 145666999999977766677777766655445556555 44444443
Q ss_pred hh-hCCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHHHHH
Q 038637 352 NL-TRAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAAKTL 411 (962)
Q Consensus 352 ~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~ 411 (962)
.. ..-...+.++.++.++..+.+.+.+-. ++. ....+..+.|++.++|.|.-...+
T Consensus 169 pTIrSRCq~f~f~~ls~eei~~~L~~Il~~-Egi---~~d~eAL~~IA~~A~Gs~RdALsL 225 (700)
T PRK12323 169 VTVLSRCLQFNLKQMPPGHIVSHLDAILGE-EGI---AHEVNALRLLAQAAQGSMRDALSL 225 (700)
T ss_pred hHHHHHHHhcccCCCChHHHHHHHHHHHHH-cCC---CCCHHHHHHHHHHcCCCHHHHHHH
Confidence 22 122357999999999999988765422 111 122456688999999999654443
No 62
>PLN03025 replication factor C subunit; Provisional
Probab=98.29 E-value=6.2e-06 Score=89.83 Aligned_cols=181 Identities=13% Similarity=0.150 Sum_probs=102.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccce-EEEEEeCCCCCHHHHHHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQF-KAWACVSEDFDVFRVTKSI 279 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~-~~wv~v~~~~~~~~~~~~i 279 (962)
.+++|.+..++.|..++... +.+.+.++|++|+||||+|+.+++.. ....|.. .+-+..++.... +..+.+
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~G~GKTtla~~la~~l-~~~~~~~~~~eln~sd~~~~-~~vr~~ 84 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG------NMPNLILSGPPGTGKTTSILALAHEL-LGPNYKEAVLELNASDDRGI-DVVRNK 84 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHH-hcccCccceeeecccccccH-HHHHHH
Confidence 45889998888888777432 34567899999999999999998732 1112221 111122222111 122222
Q ss_pred HHHhccCCCCCCccHHHHHHHHHhHhCCceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEEEecCh-hhHh-hhCCC
Q 038637 280 LKSIANDQSNNDDDLNLLQEKLKKQLSGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVVTTRNL-DVAN-LTRAY 357 (962)
Q Consensus 280 l~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~-~~~~~ 357 (962)
++.+..... ..-.++.-++|+|++..........+...+......+++|+++... .+.. .....
T Consensus 85 i~~~~~~~~--------------~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc 150 (319)
T PLN03025 85 IKMFAQKKV--------------TLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRC 150 (319)
T ss_pred HHHHHhccc--------------cCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhh
Confidence 222111100 0002456689999996654444444444343333556777766442 2211 11123
Q ss_pred CcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHH
Q 038637 358 PKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLA 407 (962)
Q Consensus 358 ~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLa 407 (962)
..++++++++++....+...+-.. +.. -..+....|++.++|..-.
T Consensus 151 ~~i~f~~l~~~~l~~~L~~i~~~e-gi~---i~~~~l~~i~~~~~gDlR~ 196 (319)
T PLN03025 151 AIVRFSRLSDQEILGRLMKVVEAE-KVP---YVPEGLEAIIFTADGDMRQ 196 (319)
T ss_pred hcccCCCCCHHHHHHHHHHHHHHc-CCC---CCHHHHHHHHHHcCCCHHH
Confidence 568999999999998888766322 211 2246678899999987643
No 63
>PRK04195 replication factor C large subunit; Provisional
Probab=98.29 E-value=3.2e-05 Score=89.15 Aligned_cols=247 Identities=19% Similarity=0.158 Sum_probs=134.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSIL 280 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 280 (962)
.+++|.+..++.+.+|+..... ....+.+.|+|++|+||||+|+.+++... |+ .+-++.+...+ ...+..++
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~--g~~~~~lLL~GppG~GKTtla~ala~el~----~~-~ielnasd~r~-~~~i~~~i 85 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLK--GKPKKALLLYGPPGVGKTSLAHALANDYG----WE-VIELNASDQRT-ADVIERVA 85 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHcC----CC-EEEEccccccc-HHHHHHHH
Confidence 4599999999999999865331 12368899999999999999999988431 22 22233333222 22333333
Q ss_pred HHhccCCCCCCccHHHHHHHHHhHhCCceEEEEEecCCCCCc----cchhhccCCCCCCCCCcEEEEEecCh-hhHh--h
Q 038637 281 KSIANDQSNNDDDLNLLQEKLKKQLSGNKFLLVLDDVWNKNY----NYWSILSCPFGAGAPGSKIVVTTRNL-DVAN--L 353 (962)
Q Consensus 281 ~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~----~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~--~ 353 (962)
........ ....++-+||+|++..-.. ..+..+...+.. .+..||+|+.+. .... .
T Consensus 86 ~~~~~~~s---------------l~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~L 148 (482)
T PRK04195 86 GEAATSGS---------------LFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLREL 148 (482)
T ss_pred HHhhccCc---------------ccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhH
Confidence 32221110 0113677999999965321 123334333321 334466665432 2211 1
Q ss_pred hCCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHHHHHHhhhcCC-C--ChhHHHHHHhh
Q 038637 354 TRAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAAKTLGGLLRGK-D--DLTDWEFVLNT 430 (962)
Q Consensus 354 ~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~~L~~~-~--~~~~w~~~~~~ 430 (962)
-.....+.+.+++.++....+.+.+... +.. ...+....|++.++|..-.+......+... . +.+....+..
T Consensus 149 rsr~~~I~f~~~~~~~i~~~L~~i~~~e-gi~---i~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~- 223 (482)
T PRK04195 149 RNACLMIEFKRLSTRSIVPVLKRICRKE-GIE---CDDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR- 223 (482)
T ss_pred hccceEEEecCCCHHHHHHHHHHHHHHc-CCC---CCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc-
Confidence 1233568899999999988887765332 212 225678899999999776554433333332 1 2222222221
Q ss_pred hhhcccccccCchhHHHhhcc-CCchhhHhHHhhhcCCCCCceeCHHHHHHHHHHcCCccc
Q 038637 431 DIWKLQEENYGIIPALRVSYH-FLPSQLKQCFAYCSLFPKDYEFQEEEIILLWTAEGFLDQ 490 (962)
Q Consensus 431 ~~~~~~~~~~~i~~~l~~sy~-~L~~~~k~cfl~~~~fp~~~~i~~~~li~~W~aeg~i~~ 490 (962)
.....+++.++..-+. .-+......+.. ..++.+ .+-.|+.|.+...
T Consensus 224 -----~d~~~~if~~l~~i~~~k~~~~a~~~~~~-------~~~~~~-~i~~~l~en~~~~ 271 (482)
T PRK04195 224 -----RDREESIFDALDAVFKARNADQALEASYD-------VDEDPD-DLIEWIDENIPKE 271 (482)
T ss_pred -----CCCCCCHHHHHHHHHCCCCHHHHHHHHHc-------ccCCHH-HHHHHHHhccccc
Confidence 1112345555554443 222233332222 223333 4678999998764
No 64
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.29 E-value=3.3e-06 Score=80.84 Aligned_cols=124 Identities=18% Similarity=0.094 Sum_probs=70.5
Q ss_pred ccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHh
Q 038637 204 YGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSI 283 (962)
Q Consensus 204 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l 283 (962)
+|++..++.+...+... ..+.+.|+|++|+|||++|+.+++... ..-..++++.+.+..........+...
T Consensus 1 ~~~~~~~~~i~~~~~~~------~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~- 71 (151)
T cd00009 1 VGQEEAIEALREALELP------PPKNLLLYGPPGTGKTTLARAIANELF--RPGAPFLYLNASDLLEGLVVAELFGHF- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCeEEEehhhhhhhhHHHHHhhhh-
Confidence 47888899998888543 346889999999999999999998432 112345566554443322211111000
Q ss_pred ccCCCCCCccHHHHHHHHHhHhCCceEEEEEecCCCCC---ccchhhccCCCCCC---CCCcEEEEEecCh
Q 038637 284 ANDQSNNDDDLNLLQEKLKKQLSGNKFLLVLDDVWNKN---YNYWSILSCPFGAG---APGSKIVVTTRNL 348 (962)
Q Consensus 284 ~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~---~~~~~~l~~~l~~~---~~gs~ilvTtR~~ 348 (962)
............++.++|+||++... ...+..+...+... ..+..||+||...
T Consensus 72 ------------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~ 130 (151)
T cd00009 72 ------------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRP 130 (151)
T ss_pred ------------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcc
Confidence 00111122234567899999997431 12222222222221 3577888888764
No 65
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.27 E-value=5.5e-06 Score=81.60 Aligned_cols=178 Identities=21% Similarity=0.235 Sum_probs=89.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSIL 280 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 280 (962)
.+|||.+.-++.+.-++..... ....+..+.++|++|+||||||+-+++. ....|. +.+. ...+...-+..++
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~-r~~~l~h~lf~GPPG~GKTTLA~IIA~e--~~~~~~---~~sg-~~i~k~~dl~~il 96 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKK-RGEALDHMLFYGPPGLGKTTLARIIANE--LGVNFK---ITSG-PAIEKAGDLAAIL 96 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHC-TTS---EEEEESSTTSSHHHHHHHHHHH--CT--EE---EEEC-CC--SCHHHHHHH
T ss_pred HHccCcHHHHhhhHHHHHHHHh-cCCCcceEEEECCCccchhHHHHHHHhc--cCCCeE---eccc-hhhhhHHHHHHHH
Confidence 5799999988887655542211 1246788999999999999999999983 444442 2221 1111111111222
Q ss_pred HHhccCCCCCCccHHHHHHHHHhHhCCceEEEEEecCCCCCccchhhccCCCCC--------C-----------CCCcEE
Q 038637 281 KSIANDQSNNDDDLNLLQEKLKKQLSGNKFLLVLDDVWNKNYNYWSILSCPFGA--------G-----------APGSKI 341 (962)
Q Consensus 281 ~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~--------~-----------~~gs~i 341 (962)
..+ +++.+|++|.++.-+...-+.+..++.+ . .+-+-|
T Consensus 97 ~~l-----------------------~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTli 153 (233)
T PF05496_consen 97 TNL-----------------------KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLI 153 (233)
T ss_dssp HT-------------------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEE
T ss_pred Hhc-----------------------CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEe
Confidence 222 1234555666644332222222111110 0 123345
Q ss_pred EEEecChhhHhhhCCC--CcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHHHHHH
Q 038637 342 VVTTRNLDVANLTRAY--PKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAAKTLG 412 (962)
Q Consensus 342 lvTtR~~~v~~~~~~~--~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~ 412 (962)
=-|||...+..-...- -..+++..+.+|-.++..+.+-. -.-+-.++.+.+|+++|.|.|--+.-+-
T Consensus 154 gATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~----l~i~i~~~~~~~Ia~rsrGtPRiAnrll 222 (233)
T PF05496_consen 154 GATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARI----LNIEIDEDAAEEIARRSRGTPRIANRLL 222 (233)
T ss_dssp EEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHC----TT-EE-HHHHHHHHHCTTTSHHHHHHHH
T ss_pred eeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHH----hCCCcCHHHHHHHHHhcCCChHHHHHHH
Confidence 5588875444333221 23579999999999999876532 2234457889999999999996444333
No 66
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.25 E-value=7.6e-07 Score=100.87 Aligned_cols=197 Identities=23% Similarity=0.324 Sum_probs=141.9
Q ss_pred cEEEeCCCcCcccccccccCCCcCCeEeccCCCCccccccccccc-cCcEEeeCCCccccccchhcccCCCccEEecCCC
Q 038637 618 RVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLY-NLHTILLENCWELKKLCKDMGNLTKLRHLRNSDA 696 (962)
Q Consensus 618 r~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~-~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~ 696 (962)
..|++..+ .+...+..+..+..+..|++.++.++.+|..+..+. +|+.|++++| .+..+|..+..+++|+.|++++|
T Consensus 96 ~~l~~~~~-~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 96 PSLDLNLN-RLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred ceeecccc-ccccCchhhhcccceeEEecCCcccccCccccccchhhccccccccc-chhhhhhhhhccccccccccCCc
Confidence 35777777 443444456677899999999999999999999995 9999999999 88899888999999999999999
Q ss_pred CCccccCCCCCCCCCCCccCCeEeCCCCCCCcccccCcccCCCeEEEeccCCCCChhhhhhhcCcCCcCCCceEEeccCC
Q 038637 697 GLLEEMPKGFGKLTSLLTLGRFVVGKDSGSGLRELKSLTHLQGTLRISKLENVEDVGDACEAQLNNKVNLRTLLLDWSAR 776 (962)
Q Consensus 697 ~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 776 (962)
. +..+|...+.+++|+.|..- +..+..+.. .......|++|.+..+.
T Consensus 174 ~-l~~l~~~~~~~~~L~~L~ls------~N~i~~l~~-------------------------~~~~~~~L~~l~~~~N~- 220 (394)
T COG4886 174 D-LSDLPKLLSNLSNLNNLDLS------GNKISDLPP-------------------------EIELLSALEELDLSNNS- 220 (394)
T ss_pred h-hhhhhhhhhhhhhhhheecc------CCccccCch-------------------------hhhhhhhhhhhhhcCCc-
Confidence 8 78888776677777666321 111111111 01122346666655552
Q ss_pred CCCCccchhhHHhhhccCCCCCCcCeEEEeecCCCCCCcCcCCCCCCCccEEEEeCCCCCCCCCCCCCCCCcCeEeecCC
Q 038637 777 DVQNLDQCEFETRVLSMLKPHRDVQELTIRGYGGTKFPIWLGDSSFSKLVNLKFGYCRMCTSLPSVGQLPLLKHLKISGM 856 (962)
Q Consensus 777 ~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~lp~L~~L~L~~~ 856 (962)
....+..+....++..|.+.++.+..+|.++. .+++|+.|++++|.+.. ++.++.+.+|+.|+++++
T Consensus 221 ----------~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~--~l~~l~~L~~s~n~i~~-i~~~~~~~~l~~L~~s~n 287 (394)
T COG4886 221 ----------IIELLSSLSNLKNLSGLELSNNKLEDLPESIG--NLSNLETLDLSNNQISS-ISSLGSLTNLRELDLSGN 287 (394)
T ss_pred ----------ceecchhhhhcccccccccCCceeeeccchhc--cccccceeccccccccc-cccccccCccCEEeccCc
Confidence 12344456666777778788887776677775 78889999999998765 445888999999999987
Q ss_pred CCceEe
Q 038637 857 DRVKSV 862 (962)
Q Consensus 857 ~~~~~~ 862 (962)
......
T Consensus 288 ~~~~~~ 293 (394)
T COG4886 288 SLSNAL 293 (394)
T ss_pred cccccc
Confidence 654443
No 67
>PRK08727 hypothetical protein; Validated
Probab=98.24 E-value=1.7e-05 Score=81.80 Aligned_cols=148 Identities=17% Similarity=0.168 Sum_probs=89.1
Q ss_pred EEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCccHHHHHHHHHhHhCCc
Q 038637 229 SVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSIANDQSNNDDDLNLLQEKLKKQLSGN 308 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k 308 (962)
..+.|+|..|+|||+|++++++. .......+.|+++.+ ....+. +.+. .+ .+
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~--~~~~~~~~~y~~~~~------~~~~~~------------------~~~~-~l-~~ 93 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAA--AEQAGRSSAYLPLQA------AAGRLR------------------DALE-AL-EG 93 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEeHHH------hhhhHH------------------HHHH-HH-hc
Confidence 46999999999999999999874 333333556665322 111110 1111 11 12
Q ss_pred eEEEEEecCCCCC-ccchhhccCCCCC--CCCCcEEEEEecCh---------hhHhhhCCCCcccCCCCCHHHHHHHHHH
Q 038637 309 KFLLVLDDVWNKN-YNYWSILSCPFGA--GAPGSKIVVTTRNL---------DVANLTRAYPKYGLKELSDDDCLRVVIQ 376 (962)
Q Consensus 309 r~LlVlDdv~~~~-~~~~~~l~~~l~~--~~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf~~ 376 (962)
.-+||+||+.... ...|......+.. ...|..||+|++.. ++...+.....+++++++.++-.+++.+
T Consensus 94 ~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~ 173 (233)
T PRK08727 94 RSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRE 173 (233)
T ss_pred CCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHH
Confidence 3489999995321 1233322222221 12466799999852 2333333456789999999999999998
Q ss_pred hhcCCCCCCCCcchHHHHHHHHHhcCCChHHH
Q 038637 377 HSLGATGFSTNQSLKDVGEKIAKKCKGLPLAA 408 (962)
Q Consensus 377 ~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai 408 (962)
++... +. .--++...-|++.++|-.-.+
T Consensus 174 ~a~~~-~l---~l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 174 RAQRR-GL---ALDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHc-CC---CCCHHHHHHHHHhCCCCHHHH
Confidence 77532 11 223567788888888766554
No 68
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=1.2e-05 Score=91.86 Aligned_cols=184 Identities=20% Similarity=0.141 Sum_probs=109.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchh-------------------cccceE
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQ-------------------RHFQFK 261 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-------------------~~F~~~ 261 (962)
.+++|.+..++.|...+.... -...+.++|+.|+||||+|+.+++...-. +.|...
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r-----l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK-----VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 468999999999999885432 23557899999999999999997621100 012222
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhccCCCCCCccHHHHHHHHHhH-hCCceEEEEEecCCCCCccchhhccCCCCCCCCCcE
Q 038637 262 AWACVSEDFDVFRVTKSILKSIANDQSNNDDDLNLLQEKLKKQ-LSGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSK 340 (962)
Q Consensus 262 ~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 340 (962)
+++........ .+...+.+.+... ..+++-++|+|++...+...++.+...+......+.
T Consensus 91 ieidaas~~gv-------------------d~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~ 151 (546)
T PRK14957 91 IEIDAASRTGV-------------------EETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVK 151 (546)
T ss_pred EEeecccccCH-------------------HHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCce
Confidence 22222111111 1222233333211 235667999999976655566667666655445555
Q ss_pred EEE-EecChhhHhh-hCCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChH-HHHHHH
Q 038637 341 IVV-TTRNLDVANL-TRAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPL-AAKTLG 412 (962)
Q Consensus 341 ilv-TtR~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPL-ai~~~~ 412 (962)
+|+ ||....+... ......+++++++.++....+.+.+-. .+ -...++....|++.++|.+- |+..+-
T Consensus 152 fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~-eg---i~~e~~Al~~Ia~~s~GdlR~alnlLe 222 (546)
T PRK14957 152 FILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAK-EN---INSDEQSLEYIAYHAKGSLRDALSLLD 222 (546)
T ss_pred EEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHH-cC---CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 554 5544333322 223467999999999988877764422 11 12235667789999999764 444443
No 69
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.22 E-value=3.4e-07 Score=91.41 Aligned_cols=59 Identities=20% Similarity=0.331 Sum_probs=36.2
Q ss_pred CCCcCeEEEeecCCCCCCcCcCCCCCCCccEEEEeCCCCC--CCCCCCCCCCCcCeEeecCCCC
Q 038637 797 HRDVQELTIRGYGGTKFPIWLGDSSFSKLVNLKFGYCRMC--TSLPSVGQLPLLKHLKISGMDR 858 (962)
Q Consensus 797 ~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~--~~l~~l~~lp~L~~L~L~~~~~ 858 (962)
+.+++.|.+.+|.+..+.. + ..+.+|..|++++|++. +....+|+||.|++|.|.+|+.
T Consensus 351 LGNIKtL~La~N~iE~LSG-L--~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 351 LGNIKTLKLAQNKIETLSG-L--RKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hcCEeeeehhhhhHhhhhh-h--HhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 3455566666655443322 1 14566777777777654 3445678888888888887764
No 70
>PTZ00202 tuzin; Provisional
Probab=98.22 E-value=1.8e-05 Score=85.06 Aligned_cols=167 Identities=14% Similarity=0.171 Sum_probs=99.5
Q ss_pred cCCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHH
Q 038637 199 NEAEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKS 278 (962)
Q Consensus 199 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~ 278 (962)
+...|+||+.++++|...|...+. ...+++.|+|++|.|||||++.+..... +. ..+++.. +..++++.
T Consensus 260 ~~~~FVGReaEla~Lr~VL~~~d~---~~privvLtG~~G~GKTTLlR~~~~~l~----~~-qL~vNpr---g~eElLr~ 328 (550)
T PTZ00202 260 VIRQFVSREAEESWVRQVLRRLDT---AHPRIVVFTGFRGCGKSSLCRSAVRKEG----MP-AVFVDVR---GTEDTLRS 328 (550)
T ss_pred CccCCCCcHHHHHHHHHHHhccCC---CCceEEEEECCCCCCHHHHHHHHHhcCC----ce-EEEECCC---CHHHHHHH
Confidence 346799999999999999865432 2456999999999999999999986322 21 2233222 67999999
Q ss_pred HHHHhccCCCCCC-ccHHHHHHHHHhHh-C-CceEEEEEecCCCCC-ccchhhccCCCCCCCCCcEEEEEecChhhHhhh
Q 038637 279 ILKSIANDQSNND-DDLNLLQEKLKKQL-S-GNKFLLVLDDVWNKN-YNYWSILSCPFGAGAPGSKIVVTTRNLDVANLT 354 (962)
Q Consensus 279 il~~l~~~~~~~~-~~~~~~~~~l~~~l-~-~kr~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~ 354 (962)
++.+++.+..... .-.+.+++.+.+.- . +++.+||+-==...+ .-.+.+.. .+.....-|.|++----+.+....
T Consensus 329 LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne~v-~la~drr~ch~v~evpleslt~~~ 407 (550)
T PTZ00202 329 VVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNEVV-ALACDRRLCHVVIEVPLESLTIAN 407 (550)
T ss_pred HHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHHHH-HHHccchhheeeeeehHhhcchhc
Confidence 9999997433121 12244444444432 3 677777764221111 01112211 122233456666654333322111
Q ss_pred C---CCCcccCCCCCHHHHHHHHHHh
Q 038637 355 R---AYPKYGLKELSDDDCLRVVIQH 377 (962)
Q Consensus 355 ~---~~~~~~l~~L~~~~~~~Lf~~~ 377 (962)
. --.-|.++.++.++|.++....
T Consensus 408 ~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 408 TLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred ccCccceeEecCCCCHHHHHHHHhhc
Confidence 1 1234788999999998876553
No 71
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.21 E-value=7.4e-06 Score=97.14 Aligned_cols=172 Identities=22% Similarity=0.260 Sum_probs=96.9
Q ss_pred CccccchhhHH---HHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHH
Q 038637 201 AEVYGREKEEE---EIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTK 277 (962)
Q Consensus 201 ~~~vGr~~~~~---~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 277 (962)
++|+|.+..+. .+...+.. .....+.++|++|+||||||+.+++. ...+|.. ++.+. ...
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~------~~~~slLL~GPpGtGKTTLA~aIA~~--~~~~f~~---lna~~-~~i----- 90 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA------DRVGSLILYGPPGVGKTTLARIIANH--TRAHFSS---LNAVL-AGV----- 90 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHH--hcCccee---ehhhh-hhh-----
Confidence 45889888774 45555532 24567789999999999999999973 3333311 11110 000
Q ss_pred HHHHHhccCCCCCCccHHHHHHHHHhHh--CCceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEEE--ecCh--hhH
Q 038637 278 SILKSIANDQSNNDDDLNLLQEKLKKQL--SGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVVT--TRNL--DVA 351 (962)
Q Consensus 278 ~il~~l~~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvT--tR~~--~v~ 351 (962)
.+.....+...+.+ .+++.++|+||++.-....++.+...+. .|+.++++ |.+. .+.
T Consensus 91 --------------~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~ 153 (725)
T PRK13341 91 --------------KDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVN 153 (725)
T ss_pred --------------HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhh
Confidence 01111122222222 2467899999997655445555544332 35555553 4432 121
Q ss_pred hh-hCCCCcccCCCCCHHHHHHHHHHhhcCCC---CCCCCcchHHHHHHHHHhcCCChH
Q 038637 352 NL-TRAYPKYGLKELSDDDCLRVVIQHSLGAT---GFSTNQSLKDVGEKIAKKCKGLPL 406 (962)
Q Consensus 352 ~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~---~~~~~~~~~~~~~~I~~~c~glPL 406 (962)
.. ..-...+.+++|+.++...++.+.+-... +.....-.++....|++.+.|.--
T Consensus 154 ~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 154 KALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred hHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 11 11235689999999999999987653100 001112235667888888888643
No 72
>PLN03150 hypothetical protein; Provisional
Probab=98.21 E-value=1.5e-06 Score=103.00 Aligned_cols=94 Identities=27% Similarity=0.330 Sum_probs=80.9
Q ss_pred cccEEEeCCCcCcccccccccCCCcCCeEeccCCCCc-cccccccccccCcEEeeCCCccccccchhcccCCCccEEecC
Q 038637 616 RLRVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQ-ILPESINSLYNLHTILLENCWELKKLCKDMGNLTKLRHLRNS 694 (962)
Q Consensus 616 ~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 694 (962)
.++.|+|++|.....+|..++.|.+|++|+|++|.+. .+|..++.+.+|++|+|++|...+.+|..+.+|++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788999998544578888999999999999999998 888899999999999999996667889999999999999999
Q ss_pred CCCCccccCCCCCCC
Q 038637 695 DAGLLEEMPKGFGKL 709 (962)
Q Consensus 695 ~~~~~~~~p~~i~~l 709 (962)
+|.+...+|..++.+
T Consensus 499 ~N~l~g~iP~~l~~~ 513 (623)
T PLN03150 499 GNSLSGRVPAALGGR 513 (623)
T ss_pred CCcccccCChHHhhc
Confidence 998777888877643
No 73
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.20 E-value=1.6e-06 Score=68.36 Aligned_cols=57 Identities=28% Similarity=0.506 Sum_probs=36.8
Q ss_pred CcccEEEeCCCcCccccc-ccccCCCcCCeEeccCCCCccccc-cccccccCcEEeeCCC
Q 038637 615 PRLRVFSLCGYCNIFNLP-NEIGNLKHLRCLNLSRTRIQILPE-SINSLYNLHTILLENC 672 (962)
Q Consensus 615 ~~Lr~L~L~~~~~~~~lp-~~i~~L~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~ 672 (962)
++|++|++++| .+..+| ..|.++++|++|++++|.++.+|+ .+..+++|++|++++|
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 35666777766 566665 456667777777777766666554 4566666666666666
No 74
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.20 E-value=2.4e-05 Score=85.83 Aligned_cols=180 Identities=14% Similarity=0.155 Sum_probs=102.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEe--CCCCCHHHHHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACV--SEDFDVFRVTKS 278 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v--~~~~~~~~~~~~ 278 (962)
.+++|++..++.+..++... ..+.+.++|++|+||||+|+.+++... ...+.. .++.+ +...... ....
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~~l~-~~~~~~-~~i~~~~~~~~~~~-~~~~ 87 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALARELY-GEDWRE-NFLELNASDERGID-VIRN 87 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHc-CCcccc-ceEEeccccccchH-HHHH
Confidence 45889999999999998543 334579999999999999999987421 111211 12222 2211111 1111
Q ss_pred HHHHhccCCCCCCccHHHHHHHHHhHhCCceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEEEecCh-hhHh-hhCC
Q 038637 279 ILKSIANDQSNNDDDLNLLQEKLKKQLSGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVVTTRNL-DVAN-LTRA 356 (962)
Q Consensus 279 il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~-~~~~ 356 (962)
.+.++....+ .-...+-++++|++..-.......+...+......+.+|+++... .+.. ....
T Consensus 88 ~i~~~~~~~~---------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr 152 (319)
T PRK00440 88 KIKEFARTAP---------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSR 152 (319)
T ss_pred HHHHHHhcCC---------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHH
Confidence 1111111000 001235689999985543333444444444334456777766432 1111 1112
Q ss_pred CCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHH
Q 038637 357 YPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAA 408 (962)
Q Consensus 357 ~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai 408 (962)
...+++.++++++....+...+-.. +. .-.++....+++.++|.+--+
T Consensus 153 ~~~~~~~~l~~~ei~~~l~~~~~~~-~~---~i~~~al~~l~~~~~gd~r~~ 200 (319)
T PRK00440 153 CAVFRFSPLKKEAVAERLRYIAENE-GI---EITDDALEAIYYVSEGDMRKA 200 (319)
T ss_pred hheeeeCCCCHHHHHHHHHHHHHHc-CC---CCCHHHHHHHHHHcCCCHHHH
Confidence 3458899999999988888766322 11 123567888999999987653
No 75
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=3.8e-06 Score=93.20 Aligned_cols=196 Identities=15% Similarity=0.075 Sum_probs=111.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSIL 280 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 280 (962)
.++||.+..+..|..++.... -...+.++|+.|+||||+|+.+++...-. +... ...+........+...+.
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-----i~ha~Lf~GP~GtGKTTlAriLAk~Lnce-~~~~--~~pCg~C~sC~~i~~g~~ 89 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-----IGHAYIFFGPRGVGKTTIARILAKRLNCE-NPIG--NEPCNECTSCLEITKGIS 89 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhcCcc-cccC--ccccCCCcHHHHHHccCC
Confidence 468999999999999886442 23467899999999999999998732111 1000 011111111112211110
Q ss_pred HHh---ccCCCCCCccHHHHHHHHHhH-hCCceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEE-EecChhhHhh-h
Q 038637 281 KSI---ANDQSNNDDDLNLLQEKLKKQ-LSGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVV-TTRNLDVANL-T 354 (962)
Q Consensus 281 ~~l---~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-TtR~~~v~~~-~ 354 (962)
..+ .........+..++.+.+... ..++.-++|+|++..-+...++.+...+........+|+ ||....+... .
T Consensus 90 ~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~ 169 (484)
T PRK14956 90 SDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETIL 169 (484)
T ss_pred ccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHH
Confidence 000 000000112223333333321 245667999999977666677777666654434445444 4444444322 2
Q ss_pred CCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHH
Q 038637 355 RAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAA 408 (962)
Q Consensus 355 ~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai 408 (962)
.-...|.+.+++.++..+.+.+.+-.. + -....+....|++.++|.+--+
T Consensus 170 SRCq~~~f~~ls~~~i~~~L~~i~~~E-g---i~~e~eAL~~Ia~~S~Gd~RdA 219 (484)
T PRK14956 170 SRCQDFIFKKVPLSVLQDYSEKLCKIE-N---VQYDQEGLFWIAKKGDGSVRDM 219 (484)
T ss_pred hhhheeeecCCCHHHHHHHHHHHHHHc-C---CCCCHHHHHHHHHHcCChHHHH
Confidence 233569999999999988887765322 1 1223567888999999998533
No 76
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.19 E-value=3.4e-05 Score=87.70 Aligned_cols=199 Identities=18% Similarity=0.199 Sum_probs=111.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccce-EEEEEeCCCCCHHHHHHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQF-KAWACVSEDFDVFRVTKSI 279 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~-~~wv~v~~~~~~~~~~~~i 279 (962)
.+++|.+..+..|...+.... -...+.++|+.|+||||+|+.+++...-...... ..+..+....+-..+....
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r-----i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~ 95 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR-----LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHN 95 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCC
Confidence 468999999998888775432 3467889999999999999999874211110000 0001111111101110000
Q ss_pred ---HHHhccCCCCCCccHHHHHHHHHh-HhCCceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEE-EecChhhHhhh
Q 038637 280 ---LKSIANDQSNNDDDLNLLQEKLKK-QLSGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVV-TTRNLDVANLT 354 (962)
Q Consensus 280 ---l~~l~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-TtR~~~v~~~~ 354 (962)
+..+.........+...+.+.... -..+++-++|+|+++.-+...|..+...+......+.+|+ ||+...+....
T Consensus 96 h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI 175 (507)
T PRK06645 96 HPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATI 175 (507)
T ss_pred CCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHH
Confidence 000000000011122222222211 1245677899999987666677777766665545566554 55544444322
Q ss_pred -CCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHH
Q 038637 355 -RAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAA 408 (962)
Q Consensus 355 -~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai 408 (962)
.....+++.+++.++....+.+.+-..+ .....+....|++.++|.+--+
T Consensus 176 ~SRc~~~ef~~ls~~el~~~L~~i~~~eg----i~ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 176 ISRCQRYDLRRLSFEEIFKLLEYITKQEN----LKTDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred HhcceEEEccCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHH
Confidence 2335689999999999999988764321 1122456778999999987543
No 77
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=3.9e-07 Score=96.08 Aligned_cols=87 Identities=20% Similarity=0.190 Sum_probs=40.7
Q ss_pred hhCCCCcccEEEeCCCcCccccccc--ccCCCcCCeEeccCCCCc--cccccccccccCcEEeeCCCccccccchhcccC
Q 038637 610 LLNHLPRLRVFSLCGYCNIFNLPNE--IGNLKHLRCLNLSRTRIQ--ILPESINSLYNLHTILLENCWELKKLCKDMGNL 685 (962)
Q Consensus 610 ~l~~l~~Lr~L~L~~~~~~~~lp~~--i~~L~~Lr~L~Ls~~~i~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L 685 (962)
+...+++|+.|+|+.| .+....++ -..+.||+.|.|+.|+++ .+-.....+++|+.|+|..|..+.........+
T Consensus 167 i~eqLp~Le~LNls~N-rl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~ 245 (505)
T KOG3207|consen 167 IAEQLPSLENLNLSSN-RLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKIL 245 (505)
T ss_pred HHHhcccchhcccccc-cccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhh
Confidence 3455566666666655 22211111 124555666666666555 222223345556666665553222222223345
Q ss_pred CCccEEecCCCC
Q 038637 686 TKLRHLRNSDAG 697 (962)
Q Consensus 686 ~~L~~L~l~~~~ 697 (962)
+.|+.|+|++|+
T Consensus 246 ~~L~~LdLs~N~ 257 (505)
T KOG3207|consen 246 QTLQELDLSNNN 257 (505)
T ss_pred hHHhhccccCCc
Confidence 555566665555
No 78
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.17 E-value=2e-05 Score=90.91 Aligned_cols=197 Identities=12% Similarity=0.134 Sum_probs=105.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHH-
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSI- 279 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i- 279 (962)
.++||.+..+..|..++.... -...+.++|+.|+||||+|+.+.+...-.... -+..++....-..+...-
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r-----l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~---~~~pCg~C~sCr~i~~g~~ 87 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR-----LHHAYLLTGTRGVGKTTIARILAKSLNCENAQ---HGEPCGVCQSCTQIDAGRY 87 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccCCC---CCCCCcccHHHHHHhccCc
Confidence 569999999999999986542 24568999999999999999887631111000 000011100000000000
Q ss_pred HHHhccCCCCCCccHHHHHHHHHh---H-hCCceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEEEecCh-hhHh-h
Q 038637 280 LKSIANDQSNNDDDLNLLQEKLKK---Q-LSGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVVTTRNL-DVAN-L 353 (962)
Q Consensus 280 l~~l~~~~~~~~~~~~~~~~~l~~---~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~-~ 353 (962)
..-+..+.. .....+.+.+.+.. . ..+++-++|+|++...+......+...+......+++|++|.+. .+.. .
T Consensus 88 ~DvlEidaA-s~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TI 166 (709)
T PRK08691 88 VDLLEIDAA-SNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTV 166 (709)
T ss_pred cceEEEecc-ccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHH
Confidence 000000000 11111222222211 1 13566689999996544434444555454333456666666542 2221 1
Q ss_pred hCCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHHHH
Q 038637 354 TRAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAAKT 410 (962)
Q Consensus 354 ~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~ 410 (962)
.+....+.+.+++.++....+.+.+-.. + .....+....|++.++|.+--+..
T Consensus 167 rSRC~~f~f~~Ls~eeI~~~L~~Il~kE-g---i~id~eAL~~Ia~~A~GslRdAln 219 (709)
T PRK08691 167 LSRCLQFVLRNMTAQQVADHLAHVLDSE-K---IAYEPPALQLLGRAAAGSMRDALS 219 (709)
T ss_pred HHHHhhhhcCCCCHHHHHHHHHHHHHHc-C---CCcCHHHHHHHHHHhCCCHHHHHH
Confidence 1222458899999999998887765322 2 122356788899999998854433
No 79
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=3.6e-05 Score=89.22 Aligned_cols=198 Identities=14% Similarity=0.144 Sum_probs=108.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhccc--ceEEEEEeCCCCCHHHHHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHF--QFKAWACVSEDFDVFRVTKS 278 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F--~~~~wv~v~~~~~~~~~~~~ 278 (962)
+++||-+..++.|.+++.... -...+.++|+.|+||||+|+.+.+...-.... .....-.++...+-..+...
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-----l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~i~~g 90 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-----LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRDIDSG 90 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHHHHcC
Confidence 568999999999999886543 34567899999999999999885421100000 00000001111000000000
Q ss_pred H---HHHhccCCCCCCccHHHHHHHHHhH----hCCceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEEEe-cChhh
Q 038637 279 I---LKSIANDQSNNDDDLNLLQEKLKKQ----LSGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVVTT-RNLDV 350 (962)
Q Consensus 279 i---l~~l~~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~~~v 350 (962)
- +..+... .....+++.+.+... ..++.-++|+|++...+...++.+...+.......++|++| ....+
T Consensus 91 ~h~D~~eldaa---s~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~ki 167 (618)
T PRK14951 91 RFVDYTELDAA---SNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKV 167 (618)
T ss_pred CCCceeecCcc---cccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhh
Confidence 0 0000000 111122222222110 12445589999998776667777776665544555665554 43333
Q ss_pred H-hhhCCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHHHH
Q 038637 351 A-NLTRAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAAKT 410 (962)
Q Consensus 351 ~-~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~ 410 (962)
. ........+++++++.++..+.+.+.+-.. +. ....+....|++.++|.+--+..
T Consensus 168 l~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~e-gi---~ie~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 168 PVTVLSRCLQFNLRPMAPETVLEHLTQVLAAE-NV---PAEPQALRLLARAARGSMRDALS 224 (618)
T ss_pred hHHHHHhceeeecCCCCHHHHHHHHHHHHHHc-CC---CCCHHHHHHHHHHcCCCHHHHHH
Confidence 2 222334679999999999988887765321 11 12246678899999998754443
No 80
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.15 E-value=4.2e-05 Score=84.50 Aligned_cols=183 Identities=13% Similarity=0.098 Sum_probs=105.8
Q ss_pred CccccchhhHHHHHHHHhcCCCC----CCCCcEEEEEEcCCCchHHHHHHHHhCccchhc------------------cc
Q 038637 201 AEVYGREKEEEEIVELLLNDGLR----ADDGFSVISINGMGGVGKTTLAQLVYNDDRVQR------------------HF 258 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~----~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~------------------~F 258 (962)
++++|.+..++.|..++...... ...-...+.++|+.|+|||++|+.+++...-.. ..
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~h 84 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTH 84 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCC
Confidence 45889999999999999764310 001246688999999999999998865211000 00
Q ss_pred ceEEEEEeC-CCCCHHHHHHHHHHHhccCCCCCCccHHHHHHHHHh-HhCCceEEEEEecCCCCCccchhhccCCCCCCC
Q 038637 259 QFKAWACVS-EDFDVFRVTKSILKSIANDQSNNDDDLNLLQEKLKK-QLSGNKFLLVLDDVWNKNYNYWSILSCPFGAGA 336 (962)
Q Consensus 259 ~~~~wv~v~-~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~ 336 (962)
+...++... ... ...+...+.+.+.. -..+++-++|+|++...+......+...+....
T Consensus 85 pD~~~i~~~~~~i-------------------~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~ 145 (394)
T PRK07940 85 PDVRVVAPEGLSI-------------------GVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPP 145 (394)
T ss_pred CCEEEeccccccC-------------------CHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCC
Confidence 111111110 000 01111222222211 113455588889997665555555655555444
Q ss_pred CCcEEEEEecC-hhhHhh-hCCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHHHHH
Q 038637 337 PGSKIVVTTRN-LDVANL-TRAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAAKTL 411 (962)
Q Consensus 337 ~gs~ilvTtR~-~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~ 411 (962)
.+..+|++|.+ ..+... ..-...+.+.+++.++..+.+.+.. + . ..+.+..++..++|.|.....+
T Consensus 146 ~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~----~--~---~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 146 PRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD----G--V---DPETARRAARASQGHIGRARRL 213 (394)
T ss_pred CCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc----C--C---CHHHHHHHHHHcCCCHHHHHHH
Confidence 56666666655 333322 2233578999999999998886432 1 1 1355788999999999755444
No 81
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.15 E-value=1.5e-06 Score=83.83 Aligned_cols=82 Identities=29% Similarity=0.438 Sum_probs=29.8
Q ss_pred CCCCcccEEEeCCCcCccccccccc-CCCcCCeEeccCCCCccccccccccccCcEEeeCCCccccccchhc-ccCCCcc
Q 038637 612 NHLPRLRVFSLCGYCNIFNLPNEIG-NLKHLRCLNLSRTRIQILPESINSLYNLHTILLENCWELKKLCKDM-GNLTKLR 689 (962)
Q Consensus 612 ~~l~~Lr~L~L~~~~~~~~lp~~i~-~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i-~~L~~L~ 689 (962)
.+...++.|+|++| .+..+. .++ .+.+|+.|+|++|.|+.++ .+..|++|++|++++| .+..++..+ ..+++|+
T Consensus 16 ~n~~~~~~L~L~~n-~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 16 NNPVKLRELNLRGN-QISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNN-RISSISEGLDKNLPNLQ 91 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred cccccccccccccc-cccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCC-CCCccccchHHhCCcCC
Confidence 45567899999999 687774 466 6889999999999999885 5788999999999999 787786655 4699999
Q ss_pred EEecCCCC
Q 038637 690 HLRNSDAG 697 (962)
Q Consensus 690 ~L~l~~~~ 697 (962)
+|++++|.
T Consensus 92 ~L~L~~N~ 99 (175)
T PF14580_consen 92 ELYLSNNK 99 (175)
T ss_dssp EEE-TTS-
T ss_pred EEECcCCc
Confidence 99999987
No 82
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.14 E-value=2.3e-05 Score=90.95 Aligned_cols=195 Identities=17% Similarity=0.142 Sum_probs=109.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSIL 280 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 280 (962)
.++||.+..++.|...+.... -...+.++|+.|+||||+|+.+++...-...+.. ..++.. ..-+.|.
T Consensus 16 ~divGQe~vv~~L~~~l~~~r-----l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~---~pCg~C----~~C~~i~ 83 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR-----LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITA---TPCGEC----DNCREIE 83 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCC---CCCCCC----HHHHHHH
Confidence 569999999999999885432 2345689999999999999999763211100000 001111 1111111
Q ss_pred HH-------hccCCCCCCccHHHHHHHHHhH-hCCceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEEE-ecChhhH
Q 038637 281 KS-------IANDQSNNDDDLNLLQEKLKKQ-LSGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVVT-TRNLDVA 351 (962)
Q Consensus 281 ~~-------l~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvT-tR~~~v~ 351 (962)
.. +.........+..++.+.+... ..+++-++|+|++...+....+.+...+.......++|++ |....+.
T Consensus 84 ~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl 163 (647)
T PRK07994 84 QGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (647)
T ss_pred cCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccc
Confidence 00 0000000112222333322211 2466779999999776666666666655544445555554 4444433
Q ss_pred h-hhCCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHHHHH
Q 038637 352 N-LTRAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAAKTL 411 (962)
Q Consensus 352 ~-~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~ 411 (962)
. ...-...|.+++++.++....+.+.+-.. + .....+....|++.++|.+--+..+
T Consensus 164 ~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e-~---i~~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 164 VTILSRCLQFHLKALDVEQIRQQLEHILQAE-Q---IPFEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred hHHHhhheEeeCCCCCHHHHHHHHHHHHHHc-C---CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 2 12224679999999999998887754221 1 1123466788999999988644443
No 83
>PLN03150 hypothetical protein; Provisional
Probab=98.14 E-value=4.8e-06 Score=98.84 Aligned_cols=109 Identities=21% Similarity=0.244 Sum_probs=88.5
Q ss_pred eeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCcccccccccCCCcCCeEeccCCCCc-cccccccccccC
Q 038637 586 LRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQ-ILPESINSLYNL 664 (962)
Q Consensus 586 Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~-~lp~~i~~L~~L 664 (962)
++.|.+.++ .+.+.+|.. +.++++|+.|+|++|.....+|..++.+.+|++|+|++|.+. .+|..+++|++|
T Consensus 420 v~~L~L~~n------~L~g~ip~~-i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L 492 (623)
T PLN03150 420 IDGLGLDNQ------GLRGFIPND-ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSL 492 (623)
T ss_pred EEEEECCCC------CccccCCHH-HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCC
Confidence 555555543 344556655 678999999999999544689999999999999999999998 789999999999
Q ss_pred cEEeeCCCccccccchhcccC-CCccEEecCCCCCccc
Q 038637 665 HTILLENCWELKKLCKDMGNL-TKLRHLRNSDAGLLEE 701 (962)
Q Consensus 665 ~~L~L~~~~~l~~lp~~i~~L-~~L~~L~l~~~~~~~~ 701 (962)
++|+|++|...+.+|..+..+ .++..+++.+|..+..
T Consensus 493 ~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 493 RILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred CEEECcCCcccccCChHHhhccccCceEEecCCccccC
Confidence 999999997777899988764 5677888888864443
No 84
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.14 E-value=5.1e-05 Score=75.81 Aligned_cols=90 Identities=14% Similarity=0.187 Sum_probs=61.7
Q ss_pred CceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEEEecCh-hhHhh-hCCCCcccCCCCCHHHHHHHHHHhhcCCCCC
Q 038637 307 GNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVVTTRNL-DVANL-TRAYPKYGLKELSDDDCLRVVIQHSLGATGF 384 (962)
Q Consensus 307 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 384 (962)
+.+-++|+|++..-....++.+...+......+.+|++|++. .+... ......+++.+++.++..+.+.+. +
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~--g---- 168 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ--G---- 168 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc--C----
Confidence 556689999996655555666666665544566777777653 22221 122357999999999999988776 1
Q ss_pred CCCcchHHHHHHHHHhcCCChH
Q 038637 385 STNQSLKDVGEKIAKKCKGLPL 406 (962)
Q Consensus 385 ~~~~~~~~~~~~I~~~c~glPL 406 (962)
..++.+..|++.++|.|.
T Consensus 169 ----i~~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 169 ----ISEEAAELLLALAGGSPG 186 (188)
T ss_pred ----CCHHHHHHHHHHcCCCcc
Confidence 114668899999999885
No 85
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.13 E-value=4.9e-06 Score=89.08 Aligned_cols=101 Identities=19% Similarity=0.222 Sum_probs=65.9
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCC--CHHHHHHHHHHHhccCCCC
Q 038637 212 EIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDF--DVFRVTKSILKSIANDQSN 289 (962)
Q Consensus 212 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~--~~~~~~~~il~~l~~~~~~ 289 (962)
++++.+..-. .-.-..|+|++|+||||||++||++.... +|+..+||.+.+.. +..++++.+...+-....+
T Consensus 158 rvID~l~PIG-----kGQR~lIvgppGvGKTTLaK~Ian~I~~n-hFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d 231 (416)
T PRK09376 158 RIIDLIAPIG-----KGQRGLIVAPPKAGKTVLLQNIANSITTN-HPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFD 231 (416)
T ss_pred eeeeeecccc-----cCceEEEeCCCCCChhHHHHHHHHHHHhh-cCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCC
Confidence 3555554432 33566899999999999999999965444 89999999999887 7778888876433222221
Q ss_pred CCccHH-----HHHHHHHhH-hCCceEEEEEecCC
Q 038637 290 NDDDLN-----LLQEKLKKQ-LSGNKFLLVLDDVW 318 (962)
Q Consensus 290 ~~~~~~-----~~~~~l~~~-l~~kr~LlVlDdv~ 318 (962)
.....+ ...+.-... -.+++++|++|++.
T Consensus 232 ~~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 232 EPAERHVQVAEMVIEKAKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChH
Confidence 111111 111111111 36899999999993
No 86
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.13 E-value=3.9e-06 Score=89.09 Aligned_cols=289 Identities=17% Similarity=0.166 Sum_probs=174.5
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhcccceE-EEEEeCCCCCHHHHHHHHHHHhccCCCCCCccHHHHHHHHHhHh
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFK-AWACVSEDFDVFRVTKSILKSIANDQSNNDDDLNLLQEKLKKQL 305 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~-~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 305 (962)
..+.+.++|.|||||||++-.+.. +..-|... .++.+..-.|...+.-.....++-...+ .+.....+....
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~---~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~----g~~~~~~~~~~~ 85 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH---AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQP----GDSAVDTLVRRI 85 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh---HhhhcccceeeeeccccCchhHhHHHHHhhccccccc----chHHHHHHHHHH
Confidence 458899999999999999987765 45567644 4566666666666666666666654431 223344555666
Q ss_pred CCceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEEEecChhhHhhhCCCCcccCCCCCHH-HHHHHHHHhhcCCCC-
Q 038637 306 SGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVVTTRNLDVANLTRAYPKYGLKELSDD-DCLRVVIQHSLGATG- 383 (962)
Q Consensus 306 ~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~~~~~~~l~~L~~~-~~~~Lf~~~a~~~~~- 383 (962)
.++|.++|+||.-.- ...-..+...+..+.+.-.|+.|+|+.... .....+.+..|+.. ++.++|...+.....
T Consensus 86 ~~rr~llvldncehl-~~~~a~~i~all~~~~~~~~~atsre~~l~---~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~ 161 (414)
T COG3903 86 GDRRALLVLDNCEHL-LDACAALIVALLGACPRLAILATSREAILV---AGEVHRRVPSLSLFDEAIELFVCRAVLVALS 161 (414)
T ss_pred hhhhHHHHhcCcHHH-HHHHHHHHHHHHccchhhhhHHHhHhhhcc---cccccccCCccccCCchhHHHHHHHHHhccc
Confidence 789999999997221 111122222333444555788888874332 23345777777765 788888776632211
Q ss_pred CCCCcchHHHHHHHHHhcCCChHHHHHHHhhhcCCCC-------hhHHHHHHhhhhhcccccccCchhHHHhhccCCchh
Q 038637 384 FSTNQSLKDVGEKIAKKCKGLPLAAKTLGGLLRGKDD-------LTDWEFVLNTDIWKLQEENYGIIPALRVSYHFLPSQ 456 (962)
Q Consensus 384 ~~~~~~~~~~~~~I~~~c~glPLai~~~~~~L~~~~~-------~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~ 456 (962)
..-..........|+++..|.|++|...++..++-.. .+.|....+- ............+.+.+||.-|...
T Consensus 162 f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~-~r~a~~~~qtl~asl~ws~~lLtgw 240 (414)
T COG3903 162 FWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGG-ARLAVLRQQTLRASLDWSYALLTGW 240 (414)
T ss_pred eeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcc-cccchhHHHhccchhhhhhHhhhhH
Confidence 1222334677889999999999999999988766521 1122221111 1111112245778999999999999
Q ss_pred hHhHHhhhcCCCCCceeCHHHHHHHHHHcCCcccccCCCcHHHHHHHHHHHHhhCCCcccccC-CCCcEEEcchhhHHHH
Q 038637 457 LKQCFAYCSLFPKDYEFQEEEIILLWTAEGFLDQEYNGRKMEDLGREFVRELHSRSLFQQSSR-DASRFVMHDLINDLAR 535 (962)
Q Consensus 457 ~k~cfl~~~~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~~e~~~~~~l~~L~~r~ll~~~~~-~~~~~~mHdli~d~a~ 535 (962)
.+-.|--++.|...+.-. ...|.+-|--. .-..-.....+..+++.+++-.... +...|+.-+-++.|+.
T Consensus 241 e~~~~~rLa~~~g~f~~~----l~~~~a~g~~~-----~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~Yal 311 (414)
T COG3903 241 ERALFGRLAVFVGGFDLG----LALAVAAGADV-----DVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYAL 311 (414)
T ss_pred HHHHhcchhhhhhhhccc----HHHHHhcCCcc-----ccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 999999999998776554 33454444211 0012234445677777777643321 1223333344444444
Q ss_pred H
Q 038637 536 W 536 (962)
Q Consensus 536 ~ 536 (962)
.
T Consensus 312 a 312 (414)
T COG3903 312 A 312 (414)
T ss_pred H
Confidence 3
No 87
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.13 E-value=6.3e-05 Score=83.89 Aligned_cols=183 Identities=16% Similarity=0.182 Sum_probs=107.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchh--------------------cccce
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQ--------------------RHFQF 260 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--------------------~~F~~ 260 (962)
.+++|.+..++.+.+++.... -...+.++|++|+||||+|+.+.....-. .+++.
T Consensus 14 ~~iig~~~~~~~l~~~~~~~~-----~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~ 88 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNGR-----IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV 88 (355)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 468999999999999885432 24577899999999999998887532100 01221
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhccCCCCCCccHHHHHHHHHhH-hCCceEEEEEecCCCCCccchhhccCCCCCCCCCc
Q 038637 261 KAWACVSEDFDVFRVTKSILKSIANDQSNNDDDLNLLQEKLKKQ-LSGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGS 339 (962)
Q Consensus 261 ~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 339 (962)
+++..+.... ..+...+.+.+... ..+++-++|+|++..-.......+...+......+
T Consensus 89 -~~~~~~~~~~-------------------~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~ 148 (355)
T TIGR02397 89 -IEIDAASNNG-------------------VDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHV 148 (355)
T ss_pred -EEeeccccCC-------------------HHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccce
Confidence 2221111111 11122222222211 22455588999985443344555555554444556
Q ss_pred EEEEEecChh-hHh-hhCCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHHHHHH
Q 038637 340 KIVVTTRNLD-VAN-LTRAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAAKTLG 412 (962)
Q Consensus 340 ~ilvTtR~~~-v~~-~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~ 412 (962)
.+|++|.+.. +.. .......+++.++++++..+.+...+-.. +. .-.++.+..|++.++|.|-.+....
T Consensus 149 ~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~-g~---~i~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 149 VFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKE-GI---KIEDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred eEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHc-CC---CCCHHHHHHHHHHcCCChHHHHHHH
Confidence 6666665433 222 12233568889999999988888765322 11 1224678889999999986655443
No 88
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=5.3e-05 Score=85.37 Aligned_cols=180 Identities=14% Similarity=0.129 Sum_probs=108.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccc------h-------------hcccceE
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDR------V-------------QRHFQFK 261 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~------~-------------~~~F~~~ 261 (962)
.++||.+..++.|.+.+.... -...+.++|+.|+||||+|+.++.... . .+.+..+
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r-----i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK-----IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 568999999998888885432 235788999999999999988865210 0 0111222
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhccCCCCCCccHHHHHHHHHh-HhCCceEEEEEecCCCCCccchhhccCCCCCCCCCcE
Q 038637 262 AWACVSEDFDVFRVTKSILKSIANDQSNNDDDLNLLQEKLKK-QLSGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSK 340 (962)
Q Consensus 262 ~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 340 (962)
+.++.+......+ ..++.+.... -..++.-++|+|++..-+....+.+...+....+.++
T Consensus 88 ~eidaas~~~vdd-------------------IR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~ 148 (491)
T PRK14964 88 IEIDAASNTSVDD-------------------IKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVK 148 (491)
T ss_pred EEEecccCCCHHH-------------------HHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeE
Confidence 3333322222211 1122211111 0134566899999966555556666665655445666
Q ss_pred EEEEec-ChhhHhh-hCCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHH
Q 038637 341 IVVTTR-NLDVANL-TRAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAA 408 (962)
Q Consensus 341 ilvTtR-~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai 408 (962)
+|++|. ...+... ......+++.+++.++....+.+.+-... ..-.++....|++.++|.+-.+
T Consensus 149 fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Eg----i~i~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 149 FILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKEN----IEHDEESLKLIAENSSGSMRNA 214 (491)
T ss_pred EEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHH
Confidence 666553 3344332 22346789999999999998887663321 1223566788999999987544
No 89
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=3.8e-05 Score=88.00 Aligned_cols=182 Identities=14% Similarity=0.099 Sum_probs=106.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchh-------------------cccceE
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQ-------------------RHFQFK 261 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-------------------~~F~~~ 261 (962)
.++||-+..++.|.+++.... -...+.++|+.|+||||+|+.+.+...-. +.|...
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-----l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-----LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 469999999999999996542 23457899999999999999887632111 111112
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhccCCCCCCccHHHHHHHHHh-HhCCceEEEEEecCCCCCccchhhccCCCCCCCCCcE
Q 038637 262 AWACVSEDFDVFRVTKSILKSIANDQSNNDDDLNLLQEKLKK-QLSGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSK 340 (962)
Q Consensus 262 ~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 340 (962)
+.++.+....+. +..++.+.+.. -..++.-++|+|++..-+......+...+......++
T Consensus 91 ~eidaas~~~v~-------------------~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~ 151 (509)
T PRK14958 91 FEVDAASRTKVE-------------------DTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVK 151 (509)
T ss_pred EEEcccccCCHH-------------------HHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeE
Confidence 222222111111 11222222111 1135666899999976655566666555554445566
Q ss_pred EEEEecC-hhhHh-hhCCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHHHH
Q 038637 341 IVVTTRN-LDVAN-LTRAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAAKT 410 (962)
Q Consensus 341 ilvTtR~-~~v~~-~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~ 410 (962)
+|++|-+ ..+.. .......+++++++.++....+...+-. .+. ....+....|++.++|.+--+..
T Consensus 152 fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~-egi---~~~~~al~~ia~~s~GslR~al~ 219 (509)
T PRK14958 152 FILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKE-ENV---EFENAALDLLARAANGSVRDALS 219 (509)
T ss_pred EEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHH-cCC---CCCHHHHHHHHHHcCCcHHHHHH
Confidence 6665543 33322 1223356889999999887766555422 111 12245677899999998854433
No 90
>PRK05642 DNA replication initiation factor; Validated
Probab=98.12 E-value=3.2e-05 Score=79.85 Aligned_cols=155 Identities=20% Similarity=0.192 Sum_probs=92.0
Q ss_pred cEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCccHHHHHHHHHhHhCC
Q 038637 228 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSIANDQSNNDDDLNLLQEKLKKQLSG 307 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 307 (962)
...+.|+|..|+|||+|++++++.. ...-..++|++..+ +... ... +.+.+.+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~--~~~~~~v~y~~~~~------~~~~---------------~~~----~~~~~~~ 97 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRF--EQRGEPAVYLPLAE------LLDR---------------GPE----LLDNLEQ 97 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH--HhCCCcEEEeeHHH------HHhh---------------hHH----HHHhhhh
Confidence 3678999999999999999998732 22223456665422 1110 011 2222222
Q ss_pred ceEEEEEecCCCCC-ccchhh-ccCCCCC-CCCCcEEEEEecChh---------hHhhhCCCCcccCCCCCHHHHHHHHH
Q 038637 308 NKFLLVLDDVWNKN-YNYWSI-LSCPFGA-GAPGSKIVVTTRNLD---------VANLTRAYPKYGLKELSDDDCLRVVI 375 (962)
Q Consensus 308 kr~LlVlDdv~~~~-~~~~~~-l~~~l~~-~~~gs~ilvTtR~~~---------v~~~~~~~~~~~l~~L~~~~~~~Lf~ 375 (962)
-. ++|+||+.... ...|+. +...+.. ...|..||+|++... +...+.....+++++++.++-.+++.
T Consensus 98 ~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~ 176 (234)
T PRK05642 98 YE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQ 176 (234)
T ss_pred CC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHH
Confidence 22 68899995321 134443 3322221 125678899887522 22333345678999999999999999
Q ss_pred HhhcCCCCCCCCcchHHHHHHHHHhcCCChHHHHHHHhh
Q 038637 376 QHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAAKTLGGL 414 (962)
Q Consensus 376 ~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~~ 414 (962)
+++... +. .--+++..-|++.+.|..-.+..+-..
T Consensus 177 ~ka~~~-~~---~l~~ev~~~L~~~~~~d~r~l~~~l~~ 211 (234)
T PRK05642 177 LRASRR-GL---HLTDEVGHFILTRGTRSMSALFDLLER 211 (234)
T ss_pred HHHHHc-CC---CCCHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 776432 11 122578888999998876655544433
No 91
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.11 E-value=4.5e-05 Score=87.23 Aligned_cols=197 Identities=15% Similarity=0.164 Sum_probs=107.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSIL 280 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 280 (962)
.+++|++..++.+.+++.... -.+.+.++|+.|+||||+|+.+++... |.-|.... ....-...+.+.
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r-----l~hA~Lf~GP~GvGKTTlA~~lAk~L~------C~~~~~~~-~Cg~C~sCr~i~ 83 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK-----LTHAYIFSGPRGIGKTSIAKIFAKAIN------CLNPKDGD-CCNSCSVCESIN 83 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhc------CCCCCCCC-CCcccHHHHHHH
Confidence 568999999999999885432 235688999999999999999876321 11111100 000001111111
Q ss_pred HHhcc-----CCC--CCCccHHHHHHHHHhH-hCCceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEEEe-cChhhH
Q 038637 281 KSIAN-----DQS--NNDDDLNLLQEKLKKQ-LSGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVVTT-RNLDVA 351 (962)
Q Consensus 281 ~~l~~-----~~~--~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~~~v~ 351 (962)
..... +.. ....+...+.+.+... ..+++-++|+|++...+...+..+...+........+|++| ....+.
T Consensus 84 ~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl 163 (605)
T PRK05896 84 TNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIP 163 (605)
T ss_pred cCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhh
Confidence 10000 000 0111122222222211 12334469999996655455666665554443455555444 433443
Q ss_pred h-hhCCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChH-HHHHHHh
Q 038637 352 N-LTRAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPL-AAKTLGG 413 (962)
Q Consensus 352 ~-~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPL-ai~~~~~ 413 (962)
. .......+++.++++++....+...+-.. + ..-..+.+..|++.++|.+- |+..+-.
T Consensus 164 ~TI~SRcq~ieF~~Ls~~eL~~~L~~il~ke-g---i~Is~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 164 LTIISRCQRYNFKKLNNSELQELLKSIAKKE-K---IKIEDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHHHhhhhhcccCCCCHHHHHHHHHHHHHHc-C---CCCCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 2 22234579999999999998888765321 1 11224567889999999664 4444443
No 92
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.11 E-value=6.7e-05 Score=82.22 Aligned_cols=193 Identities=15% Similarity=0.103 Sum_probs=109.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceE--------EEEEeCCCCCH
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFK--------AWACVSEDFDV 272 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~--------~wv~v~~~~~~ 272 (962)
.+++|.+..++.|.+.+.... -...+.++|+.|+||+|+|..+.+..--....... ..+ +...
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~-~~~c--- 89 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGR-----LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAI-DPDH--- 89 (365)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccC-CCCC---
Confidence 568999999999999986543 24568899999999999998776631100000000 000 0000
Q ss_pred HHHHHHHHHHhccC---------CC----CCCccHHHHHHHHHhHh-----CCceEEEEEecCCCCCccchhhccCCCCC
Q 038637 273 FRVTKSILKSIAND---------QS----NNDDDLNLLQEKLKKQL-----SGNKFLLVLDDVWNKNYNYWSILSCPFGA 334 (962)
Q Consensus 273 ~~~~~~il~~l~~~---------~~----~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~ 334 (962)
..-+.+...-..+ .. ......+++ ..+.+.+ .+.+-++|+||+...+......+...+..
T Consensus 90 -~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdqi-R~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEe 167 (365)
T PRK07471 90 -PVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEV-RELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEE 167 (365)
T ss_pred -hHHHHHHccCCCCeEEEecccccccccccccccHHHH-HHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhc
Confidence 0111111000000 00 011122332 2233333 24567899999977666666666666654
Q ss_pred CCCCcEEEEEecCh-hhHhh-hCCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHHHHHH
Q 038637 335 GAPGSKIVVTTRNL-DVANL-TRAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAAKTLG 412 (962)
Q Consensus 335 ~~~gs~ilvTtR~~-~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~ 412 (962)
...++.+|++|... .+... ......+.+.+++.++..+++...... . ..+....++..++|.|..+..+.
T Consensus 168 pp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~-----~---~~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 168 PPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD-----L---PDDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred CCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc-----C---CHHHHHHHHHHcCCCHHHHHHHh
Confidence 44566666666654 33222 223457899999999999999875311 1 11223678999999998665543
No 93
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.10 E-value=6.9e-05 Score=81.67 Aligned_cols=197 Identities=16% Similarity=0.155 Sum_probs=111.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhc--ccceEEEEEeCCCCCHHHHHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQR--HFQFKAWACVSEDFDVFRVTKS 278 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--~F~~~~wv~v~~~~~~~~~~~~ 278 (962)
..++|.+...+.+...+.... -...+.|+|+.|+||||+|..+.+..--.. .+.... .......-...+.
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~gr-----l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~---~~~~~~~c~~c~~ 94 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREGK-----LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPET---LADPDPASPVWRQ 94 (351)
T ss_pred hhccCcHHHHHHHHHHHHcCC-----CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccc---cCCCCCCCHHHHH
Confidence 568999999999999996543 345689999999999999998876321100 011110 0001111112222
Q ss_pred HHHHhc-------cCC-C-----CCCccHHHHHHHHHhHh-----CCceEEEEEecCCCCCccchhhccCCCCCCCCCcE
Q 038637 279 ILKSIA-------NDQ-S-----NNDDDLNLLQEKLKKQL-----SGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSK 340 (962)
Q Consensus 279 il~~l~-------~~~-~-----~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 340 (962)
+...-. .+. . ......+++. .+.+.+ .+++-++|+|++...+....+.+...+........
T Consensus 95 i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~ 173 (351)
T PRK09112 95 IAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARAL 173 (351)
T ss_pred HHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCce
Confidence 222110 000 0 0111223322 333333 35667999999977665555666555544334444
Q ss_pred -EEEEecChhhHhh-hCCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHHHHHH
Q 038637 341 -IVVTTRNLDVANL-TRAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAAKTLG 412 (962)
Q Consensus 341 -ilvTtR~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~ 412 (962)
|++|++...+... ..-...+++.+++.++..+++.+.... .. ...+.+..|++.++|.|.....+.
T Consensus 174 fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~-----~~-~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 174 FILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS-----QG-SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred EEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc-----cC-CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4445444333221 122357999999999999999874311 11 224557789999999998665443
No 94
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.10 E-value=3.4e-05 Score=79.78 Aligned_cols=154 Identities=16% Similarity=0.159 Sum_probs=91.8
Q ss_pred cEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCccHHHHHHHHHhHhCC
Q 038637 228 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSIANDQSNNDDDLNLLQEKLKKQLSG 307 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 307 (962)
.+.+.|+|+.|+|||+|++.+++. ....-..+.++.+..... ...+..+.+. .
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~--~~~~~~~v~y~~~~~~~~---------------------~~~~~~~~~~----~ 97 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAE--LSQRGRAVGYVPLDKRAW---------------------FVPEVLEGME----Q 97 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEEHHHHhh---------------------hhHHHHHHhh----h
Confidence 357899999999999999999874 222223345655432100 0011111121 1
Q ss_pred ceEEEEEecCCCCC-ccchhhcc-CCCCC-CCCC-cEEEEEecCh---------hhHhhhCCCCcccCCCCCHHHHHHHH
Q 038637 308 NKFLLVLDDVWNKN-YNYWSILS-CPFGA-GAPG-SKIVVTTRNL---------DVANLTRAYPKYGLKELSDDDCLRVV 374 (962)
Q Consensus 308 kr~LlVlDdv~~~~-~~~~~~l~-~~l~~-~~~g-s~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf 374 (962)
--+|++||+.... ...|+... ..+.. ...| .++|+||+.. ++...+....+++++++++++-.+++
T Consensus 98 -~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l 176 (235)
T PRK08084 98 -LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQAL 176 (235)
T ss_pred -CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHH
Confidence 1378999995422 13344322 22211 1133 4789998753 34445556678999999999999999
Q ss_pred HHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHHHHHHh
Q 038637 375 IQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAAKTLGG 413 (962)
Q Consensus 375 ~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~ 413 (962)
.+++... +. .--+++..-|++.+.|..-++..+-.
T Consensus 177 ~~~a~~~-~~---~l~~~v~~~L~~~~~~d~r~l~~~l~ 211 (235)
T PRK08084 177 QLRARLR-GF---ELPEDVGRFLLKRLDREMRTLFMTLD 211 (235)
T ss_pred HHHHHHc-CC---CCCHHHHHHHHHhhcCCHHHHHHHHH
Confidence 8866432 21 23367888899999887665544443
No 95
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.09 E-value=3.4e-05 Score=87.37 Aligned_cols=186 Identities=17% Similarity=0.210 Sum_probs=104.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcc-------------------cceE
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRH-------------------FQFK 261 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-------------------F~~~ 261 (962)
+++||.+.....|...+.... -...+.++|++|+||||+|+.+++....... +...
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-----l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-----ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 469999988888888775432 2356789999999999999999763211000 0011
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhccCCCCCCccHHHHHHHHHh-HhCCceEEEEEecCCCCCccchhhccCCCCCCCCCcE
Q 038637 262 AWACVSEDFDVFRVTKSILKSIANDQSNNDDDLNLLQEKLKK-QLSGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSK 340 (962)
Q Consensus 262 ~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 340 (962)
..++.+..... .+...+.+.+.. -..+++-++|+|++..-.....+.+...+........
T Consensus 89 ~el~aa~~~gi-------------------d~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv 149 (472)
T PRK14962 89 IELDAASNRGI-------------------DEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVV 149 (472)
T ss_pred EEEeCcccCCH-------------------HHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEE
Confidence 11111111111 111111111111 1235667999999965433344555555543333344
Q ss_pred EEEEecC-hhhHhhh-CCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCC-ChHHHHHHHhh
Q 038637 341 IVVTTRN-LDVANLT-RAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKG-LPLAAKTLGGL 414 (962)
Q Consensus 341 ilvTtR~-~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~g-lPLai~~~~~~ 414 (962)
+|++|.+ ..+.... .....+++.+++.++....+.+.+... + -.-.++....|++.++| .+.|+..+-.+
T Consensus 150 ~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~e-g---i~i~~eal~~Ia~~s~GdlR~aln~Le~l 222 (472)
T PRK14962 150 FVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAE-G---IEIDREALSFIAKRASGGLRDALTMLEQV 222 (472)
T ss_pred EEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHc-C---CCCCHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 4444433 3333322 234578899999999988888766322 1 12235667788888865 46676666553
No 96
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=4.1e-05 Score=85.84 Aligned_cols=195 Identities=14% Similarity=0.159 Sum_probs=107.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEE-----EEeCCCCCHHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAW-----ACVSEDFDVFRV 275 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~w-----v~v~~~~~~~~~ 275 (962)
.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+++...-....+...| -.++...+-.
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~-----~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~-- 88 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCR-- 88 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC-----cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHH--
Confidence 468999999999988885432 2345789999999999999988763211110100001 1111111111
Q ss_pred HHHHHHHhccC----CCCCCccHHHHHHHHHhHh-----CCceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEEEe-
Q 038637 276 TKSILKSIAND----QSNNDDDLNLLQEKLKKQL-----SGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVVTT- 345 (962)
Q Consensus 276 ~~~il~~l~~~----~~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt- 345 (962)
.+......+ ........+++.+ +.+.+ .+++-++|+|++...+...++.+...+......+.+|++|
T Consensus 89 --~~~~~~~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~ 165 (397)
T PRK14955 89 --DFDAGTSLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATT 165 (397)
T ss_pred --HHhcCCCCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeC
Confidence 110000000 0001111222222 12222 3456688999996655556777766666554566666555
Q ss_pred cChhhHhhh-CCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHHH
Q 038637 346 RNLDVANLT-RAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAAK 409 (962)
Q Consensus 346 R~~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~ 409 (962)
+...+.... .....+++.++++++....+...+-.. + ..-..+.+..|++.++|.+--+.
T Consensus 166 ~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~-g---~~i~~~al~~l~~~s~g~lr~a~ 226 (397)
T PRK14955 166 ELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAE-G---ISVDADALQLIGRKAQGSMRDAQ 226 (397)
T ss_pred ChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHc-C---CCCCHHHHHHHHHHcCCCHHHHH
Confidence 433333221 123468899999999988887765221 1 12335778899999999875433
No 97
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.06 E-value=0.0001 Score=79.25 Aligned_cols=213 Identities=18% Similarity=0.138 Sum_probs=127.6
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHH
Q 038637 200 EAEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSI 279 (962)
Q Consensus 200 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i 279 (962)
++.++||+.+++.+.+++...-+ ....+.+.|.|-+|.|||.+...++.+..-...=.+++++.+..-....+++..|
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle--~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI 226 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLE--LNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKI 226 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhh--cccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHH
Confidence 46789999999999999976543 3467788999999999999999999864322222345777777656777888888
Q ss_pred HHHhccCCCCCCccHHHHHHHHHhHhCC--ceEEEEEecCCCCCccchhhccCCCCC-CCCCcEEEEEecCh--hhHh--
Q 038637 280 LKSIANDQSNNDDDLNLLQEKLKKQLSG--NKFLLVLDDVWNKNYNYWSILSCPFGA-GAPGSKIVVTTRNL--DVAN-- 352 (962)
Q Consensus 280 l~~l~~~~~~~~~~~~~~~~~l~~~l~~--kr~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~ilvTtR~~--~v~~-- 352 (962)
...+..... ......+.+..+..+..+ +-+|+|+|.+..-....-..+...|.+ .-+++++|+.---. +..+
T Consensus 227 ~~~~~q~~~-s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~ 305 (529)
T KOG2227|consen 227 FSSLLQDLV-SPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRF 305 (529)
T ss_pred HHHHHHHhc-CCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHH
Confidence 887733322 112224556666666654 368999999843211111222222322 23677766543211 1111
Q ss_pred --h-----hCCCCcccCCCCCHHHHHHHHHHhhcCCCCC-CCCcchHHHHHHHHHhcCCChHHHHHHHhhh
Q 038637 353 --L-----TRAYPKYGLKELSDDDCLRVVIQHSLGATGF-STNQSLKDVGEKIAKKCKGLPLAAKTLGGLL 415 (962)
Q Consensus 353 --~-----~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~-~~~~~~~~~~~~I~~~c~glPLai~~~~~~L 415 (962)
. ......+..+|.+.++-.++|..+.-..... ..+..++-.|++.+.-.|-+--|+.+.-+++
T Consensus 306 LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ai 376 (529)
T KOG2227|consen 306 LPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAI 376 (529)
T ss_pred hhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 0 1123467889999999999999987433221 1112333344444444444555555554443
No 98
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.05 E-value=4.1e-05 Score=79.15 Aligned_cols=153 Identities=18% Similarity=0.080 Sum_probs=87.0
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCccHHHHHHHHHhHhC
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSIANDQSNNDDDLNLLQEKLKKQLS 306 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 306 (962)
..+.+.|+|+.|+|||+||+.+++... .... ...+++...... . + ...
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~-~~~~-~~~~i~~~~~~~------~----~-------------------~~~- 88 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADAS-YGGR-NARYLDAASPLL------A----F-------------------DFD- 88 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH-hCCC-cEEEEehHHhHH------H----H-------------------hhc-
Confidence 346788999999999999999988421 1111 234444322110 0 0 011
Q ss_pred CceEEEEEecCCCCCccchhhccCCCCCC-CCCc-EEEEEecChhhHh--------hhCCCCcccCCCCCHHHHHHHHHH
Q 038637 307 GNKFLLVLDDVWNKNYNYWSILSCPFGAG-APGS-KIVVTTRNLDVAN--------LTRAYPKYGLKELSDDDCLRVVIQ 376 (962)
Q Consensus 307 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-~~gs-~ilvTtR~~~v~~--------~~~~~~~~~l~~L~~~~~~~Lf~~ 376 (962)
...-+||+||+..-+...-..+...+... ..+. .||+|++...... .+.....+++.++++++-..++.+
T Consensus 89 ~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~ 168 (227)
T PRK08903 89 PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKA 168 (227)
T ss_pred ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHH
Confidence 12347889999543222222233333211 2344 3666666432111 222235789999999887777765
Q ss_pred hhcCCCCCCCCcchHHHHHHHHHhcCCChHHHHHHHhhh
Q 038637 377 HSLGATGFSTNQSLKDVGEKIAKKCKGLPLAAKTLGGLL 415 (962)
Q Consensus 377 ~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~~L 415 (962)
.+-. .+ ..--++....+++.+.|.+..+..+-..+
T Consensus 169 ~~~~-~~---v~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 169 AAAE-RG---LQLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHH-cC---CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 4321 11 12235678888999999998887766554
No 99
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.05 E-value=5.3e-06 Score=65.43 Aligned_cols=58 Identities=33% Similarity=0.454 Sum_probs=51.7
Q ss_pred CcCCeEeccCCCCccccc-cccccccCcEEeeCCCccccccch-hcccCCCccEEecCCCC
Q 038637 639 KHLRCLNLSRTRIQILPE-SINSLYNLHTILLENCWELKKLCK-DMGNLTKLRHLRNSDAG 697 (962)
Q Consensus 639 ~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~ 697 (962)
++|++|++++|.++.+|. .+..+++|++|++++| .+..+|. .+..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence 479999999999999986 6789999999999998 6777765 67999999999999986
No 100
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.05 E-value=3.7e-05 Score=78.30 Aligned_cols=186 Identities=15% Similarity=0.138 Sum_probs=101.6
Q ss_pred ccccch-hhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHH
Q 038637 202 EVYGRE-KEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSIL 280 (962)
Q Consensus 202 ~~vGr~-~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 280 (962)
.++|-. +..-.....+..... .....+.|+|..|+|||.|.+++++.......=..++++ +..++...+.
T Consensus 10 fv~g~~N~~a~~~~~~ia~~~~---~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~------~~~~f~~~~~ 80 (219)
T PF00308_consen 10 FVVGESNELAYAAAKAIAENPG---ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYL------SAEEFIREFA 80 (219)
T ss_dssp S--TTTTHHHHHHHHHHHHSTT---TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEE------EHHHHHHHHH
T ss_pred CCcCCcHHHHHHHHHHHHhcCC---CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceee------cHHHHHHHHH
Confidence 345642 333344444544432 244568999999999999999999843211111134455 3455666666
Q ss_pred HHhccCCCCCCccHHHHHHHHHhHhCCceEEEEEecCCCCCc-cchhhccCCCCC--CCCCcEEEEEecCh---------
Q 038637 281 KSIANDQSNNDDDLNLLQEKLKKQLSGNKFLLVLDDVWNKNY-NYWSILSCPFGA--GAPGSKIVVTTRNL--------- 348 (962)
Q Consensus 281 ~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-~~~~~l~~~l~~--~~~gs~ilvTtR~~--------- 348 (962)
..+... ... .+++.+++ -=+|++||++.-.. ..|......+-+ ...|.+||+|++..
T Consensus 81 ~~~~~~------~~~----~~~~~~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~ 149 (219)
T PF00308_consen 81 DALRDG------EIE----EFKDRLRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLP 149 (219)
T ss_dssp HHHHTT------SHH----HHHHHHCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-H
T ss_pred HHHHcc------cch----hhhhhhhc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccCh
Confidence 655431 122 23333332 34788999955321 223332221111 13577899999652
Q ss_pred hhHhhhCCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHHHHH
Q 038637 349 DVANLTRAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAAKTL 411 (962)
Q Consensus 349 ~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~ 411 (962)
++...+...-.+++++++.++..+++.+++-... -+--++++.-|++.+.+..-.+.-+
T Consensus 150 ~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~----~~l~~~v~~~l~~~~~~~~r~L~~~ 208 (219)
T PF00308_consen 150 DLRSRLSWGLVVELQPPDDEDRRRILQKKAKERG----IELPEEVIEYLARRFRRDVRELEGA 208 (219)
T ss_dssp HHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT------S-HHHHHHHHHHTTSSHHHHHHH
T ss_pred hhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhC----CCCcHHHHHHHHHhhcCCHHHHHHH
Confidence 2334444566799999999999999998874321 1233577777888877765554433
No 101
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=1.2e-07 Score=94.65 Aligned_cols=84 Identities=19% Similarity=0.195 Sum_probs=49.1
Q ss_pred CCcCeEEEeecCCCCCCcCcC--CCCCCCccEEEEeCCCCCCC--CCCCCCCCCcCeEeecCCCCceEeCccccCCCCCC
Q 038637 798 RDVQELTIRGYGGTKFPIWLG--DSSFSKLVNLKFGYCRMCTS--LPSVGQLPLLKHLKISGMDRVKSVGLEFYGSSCSV 873 (962)
Q Consensus 798 ~~L~~L~l~~~~~~~~p~~~~--~~~l~~L~~L~L~~~~~~~~--l~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~~~~~ 873 (962)
++|..|+|+||.-.-.-+.+. ...+++|..|+|++|..... +..+-+++.|++|.+++|..+- +..+.. ..
T Consensus 286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~--p~~~~~---l~ 360 (419)
T KOG2120|consen 286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDII--PETLLE---LN 360 (419)
T ss_pred hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCC--hHHeee---ec
Confidence 467777777764221111110 02578888888888876643 2256678888888888886432 222211 12
Q ss_pred CCCCcceeecccc
Q 038637 874 PFPSLETLSFSDM 886 (962)
Q Consensus 874 ~f~~L~~L~l~~~ 886 (962)
..|+|.+|++.+|
T Consensus 361 s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 361 SKPSLVYLDVFGC 373 (419)
T ss_pred cCcceEEEEeccc
Confidence 2677777777765
No 102
>PRK09087 hypothetical protein; Validated
Probab=98.01 E-value=3.1e-05 Score=79.17 Aligned_cols=143 Identities=15% Similarity=0.116 Sum_probs=87.5
Q ss_pred cEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCccHHHHHHHHHhHhCC
Q 038637 228 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSIANDQSNNDDDLNLLQEKLKKQLSG 307 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 307 (962)
.+.+.|+|+.|+|||+|++.++.... ..+++.. .+...++. .+ .+
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-------~~~i~~~------~~~~~~~~------------------~~----~~ 88 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-------ALLIHPN------EIGSDAAN------------------AA----AE 88 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-------CEEecHH------HcchHHHH------------------hh----hc
Confidence 36789999999999999998886421 1233221 11111111 11 11
Q ss_pred ceEEEEEecCCCCCccchhhccCCCCC-CCCCcEEEEEecC---------hhhHhhhCCCCcccCCCCCHHHHHHHHHHh
Q 038637 308 NKFLLVLDDVWNKNYNYWSILSCPFGA-GAPGSKIVVTTRN---------LDVANLTRAYPKYGLKELSDDDCLRVVIQH 377 (962)
Q Consensus 308 kr~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~ilvTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 377 (962)
-+|++||+..... .-+.+...+.. ...|..||+|++. .++...+.....+++++++.++-.+++.++
T Consensus 89 --~~l~iDDi~~~~~-~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~ 165 (226)
T PRK09087 89 --GPVLIEDIDAGGF-DETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKL 165 (226)
T ss_pred --CeEEEECCCCCCC-CHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHH
Confidence 2788899943211 11222222211 1246779998874 344555566678999999999999999988
Q ss_pred hcCCCCCCCCcchHHHHHHHHHhcCCChHHHHHHH
Q 038637 378 SLGATGFSTNQSLKDVGEKIAKKCKGLPLAAKTLG 412 (962)
Q Consensus 378 a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~ 412 (962)
+-.. +. .--+++..-|++.+.|..-++..+-
T Consensus 166 ~~~~-~~---~l~~ev~~~La~~~~r~~~~l~~~l 196 (226)
T PRK09087 166 FADR-QL---YVDPHVVYYLVSRMERSLFAAQTIV 196 (226)
T ss_pred HHHc-CC---CCCHHHHHHHHHHhhhhHHHHHHHH
Confidence 7432 21 2236778889999988877666433
No 103
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=8.7e-05 Score=85.72 Aligned_cols=184 Identities=15% Similarity=0.142 Sum_probs=104.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchh-------------------cccceE
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQ-------------------RHFQFK 261 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-------------------~~F~~~ 261 (962)
+++||.+..++.|..++.... -...+.++|+.|+||||+|+.+.....-. +.|...
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~ 90 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-----LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDL 90 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCce
Confidence 468999999999999986432 23456799999999999999887632110 011112
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhccCCCCCCccHHHHHHHHHhHhCCceEEEEEecCCCCCccchhhccCCCCCCCCCcEE
Q 038637 262 AWACVSEDFDVFRVTKSILKSIANDQSNNDDDLNLLQEKLKKQLSGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKI 341 (962)
Q Consensus 262 ~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 341 (962)
+++..+..... +.+++++..+.. .-..+++-++|+|++...+....+.+...+......+.+
T Consensus 91 ~ei~~~~~~~v-d~ir~l~~~~~~-----------------~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~f 152 (527)
T PRK14969 91 IEVDAASNTQV-DAMRELLDNAQY-----------------APTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKF 152 (527)
T ss_pred eEeeccccCCH-HHHHHHHHHHhh-----------------CcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEE
Confidence 22221111111 111112111110 011356679999999665544555555555544345556
Q ss_pred EEEecC-hhhHh-hhCCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChH-HHHHH
Q 038637 342 VVTTRN-LDVAN-LTRAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPL-AAKTL 411 (962)
Q Consensus 342 lvTtR~-~~v~~-~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPL-ai~~~ 411 (962)
|++|.+ ..+.. .......+++++++.++..+.+.+.+-. ++ -...++....|++.++|.+- |+..+
T Consensus 153 IL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~-eg---i~~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 153 ILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQ-EN---IPFDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred EEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHH-cC---CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 555533 32221 1112356899999999998887765422 11 11234567889999999775 44444
No 104
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.98 E-value=9.9e-05 Score=85.91 Aligned_cols=199 Identities=15% Similarity=0.145 Sum_probs=110.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccc--eEEEEEeCCCCCHHHHHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQ--FKAWACVSEDFDVFRVTKS 278 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~--~~~wv~v~~~~~~~~~~~~ 278 (962)
.++||.+..++.|.+++.... -...+.++|+.|+||||+|+.+++...-..... ...+-.++....- +.
T Consensus 24 ~dliGq~~~v~~L~~~~~~gr-----i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C----~~ 94 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGR-----IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHC----QA 94 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHH----HH
Confidence 468999999999999996442 245688999999999999999977321111100 0000001111000 11
Q ss_pred HHHHhcc-------CCCCCCccHHHHHHHHHhH-hCCceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEEEe-cChh
Q 038637 279 ILKSIAN-------DQSNNDDDLNLLQEKLKKQ-LSGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVVTT-RNLD 349 (962)
Q Consensus 279 il~~l~~-------~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~~~ 349 (962)
|...-.. .......+..++.+.++.. ..+++-++|+|++...+....+.+...+......+.+|++| ....
T Consensus 95 i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~k 174 (598)
T PRK09111 95 IMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRK 174 (598)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhh
Confidence 1111000 0000111222232222211 12455578999996655455566665555444566666555 4333
Q ss_pred hHhh-hCCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHHHHHH
Q 038637 350 VANL-TRAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAAKTLG 412 (962)
Q Consensus 350 v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~ 412 (962)
+... ......+++..++.++....+.+.+-.. + .....+....|++.++|.+.-+...-
T Consensus 175 ll~tI~SRcq~~~f~~l~~~el~~~L~~i~~ke-g---i~i~~eAl~lIa~~a~Gdlr~al~~L 234 (598)
T PRK09111 175 VPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKE-G---VEVEDEALALIARAAEGSVRDGLSLL 234 (598)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHc-C---CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3222 2233578999999999999888765322 1 11224678889999999986554433
No 105
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.98 E-value=1.4e-05 Score=86.27 Aligned_cols=91 Identities=15% Similarity=0.125 Sum_probs=63.5
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCC--CCHHHHHHHHHHHhccCCCCCCccH-----HHHHH
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSED--FDVFRVTKSILKSIANDQSNNDDDL-----NLLQE 299 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~--~~~~~~~~~il~~l~~~~~~~~~~~-----~~~~~ 299 (962)
.-..+.|+|++|.|||||++.+++.... .+|+..+||.+.+. .++.++++.++..+-.......... ..+.+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I~~-nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAITR-NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhhcc-cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 4467899999999999999999996433 37999999999866 7899999999655443332111111 11122
Q ss_pred HHHhH-hCCceEEEEEecCC
Q 038637 300 KLKKQ-LSGNKFLLVLDDVW 318 (962)
Q Consensus 300 ~l~~~-l~~kr~LlVlDdv~ 318 (962)
..... -.+++.+|++|++.
T Consensus 246 ~Ae~~~~~GkdVVLlIDEit 265 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSIT 265 (415)
T ss_pred HHHHHHHcCCCeEEEEEChh
Confidence 22222 35899999999994
No 106
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.97 E-value=9.6e-06 Score=90.12 Aligned_cols=181 Identities=17% Similarity=0.132 Sum_probs=98.9
Q ss_pred cCCccccchhhHHHHHHHHhcCCCC-------CCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCC
Q 038637 199 NEAEVYGREKEEEEIVELLLNDGLR-------ADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFD 271 (962)
Q Consensus 199 ~~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~ 271 (962)
...++.|++..+++|.+.+...... +-...+-+.++|++|+|||++|+++++. ....| +.+.
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~--l~~~~-----~~v~---- 188 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNATF-----IRVV---- 188 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--CCCCE-----Eecc----
Confidence 3457899999999999887532110 0123456899999999999999999983 33333 2221
Q ss_pred HHHHHHHHHHHhccCCCCCCccHHHHHHHHHhHhCCceEEEEEecCCCCC-----------cc---chhhccCCCC--CC
Q 038637 272 VFRVTKSILKSIANDQSNNDDDLNLLQEKLKKQLSGNKFLLVLDDVWNKN-----------YN---YWSILSCPFG--AG 335 (962)
Q Consensus 272 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----------~~---~~~~l~~~l~--~~ 335 (962)
...+ .....+ .....+...+...-...+.+|++|+++.-. .. .+..+...+. ..
T Consensus 189 ~~~l----~~~~~g------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~ 258 (364)
T TIGR01242 189 GSEL----VRKYIG------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP 258 (364)
T ss_pred hHHH----HHHhhh------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC
Confidence 1111 111100 011111222222223467899999985320 00 1112221121 11
Q ss_pred CCCcEEEEEecChhhHh-hh----CCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCCh
Q 038637 336 APGSKIVVTTRNLDVAN-LT----RAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLP 405 (962)
Q Consensus 336 ~~gs~ilvTtR~~~v~~-~~----~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glP 405 (962)
..+.+||.||....... .. .-...+.+...+.++..++|..++.+..- ..... ...+++.+.|..
T Consensus 259 ~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l-~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 259 RGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKL-AEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCC-CccCC----HHHHHHHcCCCC
Confidence 24667888887543211 11 12346889999999999999987644321 11112 456777777764
No 107
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.96 E-value=5.2e-05 Score=77.07 Aligned_cols=183 Identities=17% Similarity=0.167 Sum_probs=112.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEE-EEeCCCCCHHHHHHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAW-ACVSEDFDVFRVTKSI 279 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~w-v~v~~~~~~~~~~~~i 279 (962)
.+++|.+..+.-|.+.+... ..++...+|++|.|||+-|..+++..--...|.+++- .++|..-... +.+.-
T Consensus 36 de~~gQe~vV~~L~~a~~~~------~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr~K 108 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLRR------ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVREK 108 (346)
T ss_pred HhhcchHHHHHHHHHHHhhc------CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chhhh
Confidence 46889999999999998652 5688999999999999999888774333455766653 2333322111 11110
Q ss_pred HHHhccCCCCCCccHHHHHHHHHhHh--CCce-EEEEEecCCCCCccchhhccCCCCCCCCCcEEEEEecCh-hhHhh-h
Q 038637 280 LKSIANDQSNNDDDLNLLQEKLKKQL--SGNK-FLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVVTTRNL-DVANL-T 354 (962)
Q Consensus 280 l~~l~~~~~~~~~~~~~~~~~l~~~l--~~kr-~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~-~ 354 (962)
+ .+...+........ .-++ =.||||++.....+.|..+...+......++.++.+-.. .+..- .
T Consensus 109 i-----------k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~ 177 (346)
T KOG0989|consen 109 I-----------KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLV 177 (346)
T ss_pred h-----------cCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHH
Confidence 0 11111111110000 1133 378899998888889999988777655666655554442 22111 1
Q ss_pred CCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCCh
Q 038637 355 RAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLP 405 (962)
Q Consensus 355 ~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glP 405 (962)
.-...|..++|.+++...-+...+-..+ -+-..+..+.|++.++|--
T Consensus 178 SRC~KfrFk~L~d~~iv~rL~~Ia~~E~----v~~d~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 178 SRCQKFRFKKLKDEDIVDRLEKIASKEG----VDIDDDALKLIAKISDGDL 224 (346)
T ss_pred hhHHHhcCCCcchHHHHHHHHHHHHHhC----CCCCHHHHHHHHHHcCCcH
Confidence 1224588999999999888887764322 2233567888999998854
No 108
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.94 E-value=1.6e-06 Score=86.66 Aligned_cols=130 Identities=19% Similarity=0.123 Sum_probs=86.6
Q ss_pred CcCCCceEEeccCCCCCCccchhhHHhhhccCCCCCCcCeEEEeecCCCCCCcCcCCCCCCCccEEEEeCCCCCCCCCCC
Q 038637 763 KVNLRTLLLDWSARDVQNLDQCEFETRVLSMLKPHRDVQELTIRGYGGTKFPIWLGDSSFSKLVNLKFGYCRMCTSLPSV 842 (962)
Q Consensus 763 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l 842 (962)
.+.|+.|+++++. ..++-++..-.|.++.|+++.|++..+-+ +. .+++|+.|+|++|.+...--+-
T Consensus 283 Wq~LtelDLS~N~-----------I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La--~L~~L~~LDLS~N~Ls~~~Gwh 348 (490)
T KOG1259|consen 283 WQELTELDLSGNL-----------ITQIDESVKLAPKLRRLILSQNRIRTVQN-LA--ELPQLQLLDLSGNLLAECVGWH 348 (490)
T ss_pred Hhhhhhccccccc-----------hhhhhhhhhhccceeEEeccccceeeehh-hh--hcccceEeecccchhHhhhhhH
Confidence 3567778877776 33555666677888899998888776655 32 6888999999988876433344
Q ss_pred CCCCCcCeEeecCCCCceEeCccccCCCCCCCCCCcceeeccccccccccccccCCccccCcCCccceEeEccCCCcc
Q 038637 843 GQLPLLKHLKISGMDRVKSVGLEFYGSSCSVPFPSLETLSFSDMREWEEWISCGAGQEVDEVFPKLRKLSLFNCYKLQ 920 (962)
Q Consensus 843 ~~lp~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~ 920 (962)
..|.|.+.|.|.+| .++.+. | ...+-+|..|++++++ ++.... ....|.+|.|+.|.+.+|| +.
T Consensus 349 ~KLGNIKtL~La~N-~iE~LS----G---L~KLYSLvnLDl~~N~-Ie~lde----V~~IG~LPCLE~l~L~~NP-l~ 412 (490)
T KOG1259|consen 349 LKLGNIKTLKLAQN-KIETLS----G---LRKLYSLVNLDLSSNQ-IEELDE----VNHIGNLPCLETLRLTGNP-LA 412 (490)
T ss_pred hhhcCEeeeehhhh-hHhhhh----h---hHhhhhheeccccccc-hhhHHH----hcccccccHHHHHhhcCCC-cc
Confidence 56778888888875 333321 1 1226788888888743 333221 1235678999999998875 44
No 109
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.93 E-value=1.2e-06 Score=90.21 Aligned_cols=86 Identities=22% Similarity=0.225 Sum_probs=56.7
Q ss_pred hCCCCcccEEEeCCCcCccc-----ccccccCCCcCCeEeccCCC----Cccccccc-------cccccCcEEeeCCCcc
Q 038637 611 LNHLPRLRVFSLCGYCNIFN-----LPNEIGNLKHLRCLNLSRTR----IQILPESI-------NSLYNLHTILLENCWE 674 (962)
Q Consensus 611 l~~l~~Lr~L~L~~~~~~~~-----lp~~i~~L~~Lr~L~Ls~~~----i~~lp~~i-------~~L~~L~~L~L~~~~~ 674 (962)
+..+..+..|+|||| .+.. +-..+.+.++||.-+++.-. ..++|+.+ -..++|++|||+.|-.
T Consensus 26 ~~~~~s~~~l~lsgn-t~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGN-TFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred hcccCceEEEeccCC-chhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 556788999999999 4432 33556677899999998632 22555542 3456888888888732
Q ss_pred ccccch----hcccCCCccEEecCCCC
Q 038637 675 LKKLCK----DMGNLTKLRHLRNSDAG 697 (962)
Q Consensus 675 l~~lp~----~i~~L~~L~~L~l~~~~ 697 (962)
-...+. -+..+..|+||++.+|.
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~G 131 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCG 131 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCC
Confidence 222222 24567788888887776
No 110
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.93 E-value=0.00021 Score=79.77 Aligned_cols=184 Identities=16% Similarity=0.222 Sum_probs=103.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccch------hcccceEEE-EEeCCCCCHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRV------QRHFQFKAW-ACVSEDFDVF 273 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~------~~~F~~~~w-v~v~~~~~~~ 273 (962)
.+++|.+..++.+.+.+.... -.+.+.++|++|+||||+|+.+.+.... ...|...+. +......+.
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~-----~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~- 90 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNH-----LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDAASNNSV- 90 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEeccccCCCH-
Confidence 458999999999999995432 3468889999999999999998763211 011211111 110000001
Q ss_pred HHHHHHHHHhccCCCCCCccHHHHHHHHHh-HhCCceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEEEe-cChhhH
Q 038637 274 RVTKSILKSIANDQSNNDDDLNLLQEKLKK-QLSGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVVTT-RNLDVA 351 (962)
Q Consensus 274 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~~~v~ 351 (962)
.+...+.+.+.. -..+++-++|+|++.......+..+...+......+.+|++| ....+.
T Consensus 91 ------------------~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~ 152 (367)
T PRK14970 91 ------------------DDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKII 152 (367)
T ss_pred ------------------HHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCC
Confidence 111111111111 112445579999985544344555544443333345555554 332322
Q ss_pred h-hhCCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChH-HHHHHH
Q 038637 352 N-LTRAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPL-AAKTLG 412 (962)
Q Consensus 352 ~-~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPL-ai~~~~ 412 (962)
. .......++.+++++++....+...+...+ . .-..+.+..|++.++|.+- ++..+-
T Consensus 153 ~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g-~---~i~~~al~~l~~~~~gdlr~~~~~le 211 (367)
T PRK14970 153 PTILSRCQIFDFKRITIKDIKEHLAGIAVKEG-I---KFEDDALHIIAQKADGALRDALSIFD 211 (367)
T ss_pred HHHHhcceeEecCCccHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 2 122335689999999999988887664321 1 1225678889999998665 333333
No 111
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.92 E-value=0.00018 Score=82.85 Aligned_cols=199 Identities=15% Similarity=0.142 Sum_probs=111.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSIL 280 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 280 (962)
.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+++...-....+.. .+... ..-+.|.
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r-----i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~---pCg~C----~sC~~i~ 83 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR-----VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGE---PCNTC----EQCRKVT 83 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhccccCCCCCC---CCccc----HHHHHHh
Confidence 468999988888888885432 24677889999999999999888742111000000 00010 0011111
Q ss_pred HHhc-------cCCCCCCccHHHHHHHHHh-HhCCceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEEEecC-hhhH
Q 038637 281 KSIA-------NDQSNNDDDLNLLQEKLKK-QLSGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVVTTRN-LDVA 351 (962)
Q Consensus 281 ~~l~-------~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~ 351 (962)
.... ........+...+.+.+.. -..+++-+||+|++...+...+..+...+........+|++|.. ..+.
T Consensus 84 ~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll 163 (624)
T PRK14959 84 QGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFP 163 (624)
T ss_pred cCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhh
Confidence 0000 0000011112222222221 12356678999999665555566666666543345555555544 3333
Q ss_pred hh-hCCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCCh-HHHHHHHhhh
Q 038637 352 NL-TRAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLP-LAAKTLGGLL 415 (962)
Q Consensus 352 ~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glP-Lai~~~~~~L 415 (962)
.. ......+++++++.++....+...+.... .....+.+..|++.++|.+ -|+..+..++
T Consensus 164 ~TI~SRcq~i~F~pLs~~eL~~~L~~il~~eg----i~id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 164 VTIVSRCQHFTFTRLSEAGLEAHLTKVLGREG----VDYDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHHHhhhhccccCCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 22 22235689999999999988877553221 1123567888999999965 6777776544
No 112
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.92 E-value=0.00022 Score=84.07 Aligned_cols=197 Identities=16% Similarity=0.165 Sum_probs=108.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSIL 280 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 280 (962)
+++||.+..++.|..++.... -...+.++|+.|+||||+|+.+++......... -+ ...+.-...+.|.
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-----i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~--~~----~~c~~c~~c~~i~ 84 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-----VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP--KG----RPCGTCEMCRAIA 84 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC--CC----CCCccCHHHHHHh
Confidence 468999999999988885432 235668999999999999999976321100000 00 0011111222222
Q ss_pred HHhccC-----C--CCCCccHHHHHHHHHhH-hCCceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEEEecC-hhhH
Q 038637 281 KSIAND-----Q--SNNDDDLNLLQEKLKKQ-LSGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVVTTRN-LDVA 351 (962)
Q Consensus 281 ~~l~~~-----~--~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~ 351 (962)
.....+ . .....+..++.+.+... ..+++-++|+|++..-+....+.+...+......+.+|++|.+ ..+.
T Consensus 85 ~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll 164 (585)
T PRK14950 85 EGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVP 164 (585)
T ss_pred cCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhh
Confidence 111110 0 00111222222222211 1245678999999654444455565555444445666665543 3332
Q ss_pred hh-hCCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHHHHHH
Q 038637 352 NL-TRAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAAKTLG 412 (962)
Q Consensus 352 ~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~ 412 (962)
.. ......+.+..++.++....+.+.+... +. ....+.+..|++.++|.+..+...-
T Consensus 165 ~tI~SR~~~i~f~~l~~~el~~~L~~~a~~e-gl---~i~~eal~~La~~s~Gdlr~al~~L 222 (585)
T PRK14950 165 ATILSRCQRFDFHRHSVADMAAHLRKIAAAE-GI---NLEPGALEAIARAATGSMRDAENLL 222 (585)
T ss_pred HHHHhccceeeCCCCCHHHHHHHHHHHHHHc-CC---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 21 2233568899999999888887765322 11 1224678899999999986554433
No 113
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.91 E-value=0.00019 Score=81.40 Aligned_cols=168 Identities=12% Similarity=0.106 Sum_probs=100.2
Q ss_pred cEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCccHHHHHHHHHhHhCC
Q 038637 228 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSIANDQSNNDDDLNLLQEKLKKQLSG 307 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 307 (962)
..-+.|+|..|+|||+|++++.+.......-..++++ +..++...+...+.... + ..+.+++.+.
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv------~~~~f~~~~~~~l~~~~-------~-~~~~~~~~~~- 205 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYM------SGDEFARKAVDILQKTH-------K-EIEQFKNEIC- 205 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEE------EHHHHHHHHHHHHHHhh-------h-HHHHHHHHhc-
Confidence 3558999999999999999998832111111223344 34456666666654311 1 1223333333
Q ss_pred ceEEEEEecCCCCCc-cch-hhccCCCCC-CCCCcEEEEEecCh---------hhHhhhCCCCcccCCCCCHHHHHHHHH
Q 038637 308 NKFLLVLDDVWNKNY-NYW-SILSCPFGA-GAPGSKIVVTTRNL---------DVANLTRAYPKYGLKELSDDDCLRVVI 375 (962)
Q Consensus 308 kr~LlVlDdv~~~~~-~~~-~~l~~~l~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf~ 375 (962)
+.-+||+||+..... ..+ +.+...+.. ...|..||+|+... .+...+...-.+.+++++.++-.+++.
T Consensus 206 ~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~ 285 (450)
T PRK14087 206 QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIK 285 (450)
T ss_pred cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHH
Confidence 234888999954321 122 223222221 12455788887642 233334445678899999999999999
Q ss_pred HhhcCCCCCCCCcchHHHHHHHHHhcCCChHHHHHHH
Q 038637 376 QHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAAKTLG 412 (962)
Q Consensus 376 ~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~ 412 (962)
+++-... .. ..-.+++..-|++.++|.|-.+.-+.
T Consensus 286 ~~~~~~g-l~-~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 286 KEIKNQN-IK-QEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHHHhcC-CC-CCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 8874321 10 12346788999999999997766554
No 114
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.88 E-value=0.00017 Score=86.92 Aligned_cols=197 Identities=14% Similarity=0.076 Sum_probs=108.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHH--
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKS-- 278 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~-- 278 (962)
.++||.+..++.|..++.... -...+.++|+.|+||||+|+.+.+...-....... .|+.+.+-..+...
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-----i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~---pCg~C~sC~~~~~g~~ 86 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-----INHAYLFSGPRGCGKTSSARILARSLNCVEGPTST---PCGECDSCVALAPGGP 86 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCC---CCcccHHHHHHHcCCC
Confidence 468999999999999986532 23457899999999999999887642110000000 00111000000000
Q ss_pred --H-HHHhccCCCCCCccHHHHHHHHH-hHhCCceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEEEec-ChhhHhh
Q 038637 279 --I-LKSIANDQSNNDDDLNLLQEKLK-KQLSGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVVTTR-NLDVANL 353 (962)
Q Consensus 279 --i-l~~l~~~~~~~~~~~~~~~~~l~-~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR-~~~v~~~ 353 (962)
+ +..+........++..++.+.+. .-..++.-++|||++...+...++.|+..+......+.+|++|. ...+...
T Consensus 87 ~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~T 166 (824)
T PRK07764 87 GSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGT 166 (824)
T ss_pred CCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHH
Confidence 0 00000000001112222222211 11235556888999977666667777766665545666565554 3344332
Q ss_pred -hCCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHHH
Q 038637 354 -TRAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAAK 409 (962)
Q Consensus 354 -~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~ 409 (962)
......|++..++.++..+++.+..-. ++. ....+....|++.++|.+..+.
T Consensus 167 IrSRc~~v~F~~l~~~~l~~~L~~il~~-EGv---~id~eal~lLa~~sgGdlR~Al 219 (824)
T PRK07764 167 IRSRTHHYPFRLVPPEVMRGYLERICAQ-EGV---PVEPGVLPLVIRAGGGSVRDSL 219 (824)
T ss_pred HHhheeEEEeeCCCHHHHHHHHHHHHHH-cCC---CCCHHHHHHHHHHcCCCHHHHH
Confidence 223467899999999988888765421 111 1234567789999999885443
No 115
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.87 E-value=1.7e-05 Score=57.16 Aligned_cols=33 Identities=39% Similarity=0.516 Sum_probs=16.3
Q ss_pred cCCeEeccCCCCccccccccccccCcEEeeCCC
Q 038637 640 HLRCLNLSRTRIQILPESINSLYNLHTILLENC 672 (962)
Q Consensus 640 ~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~ 672 (962)
+|++|+|++|.|+.+|..+++|++|++|++++|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC
Confidence 445555555555555554555555555555555
No 116
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.86 E-value=0.00017 Score=84.12 Aligned_cols=202 Identities=18% Similarity=0.194 Sum_probs=107.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEE-----EeCCCCCHHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWA-----CVSEDFDVFRV 275 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv-----~v~~~~~~~~~ 275 (962)
.++||.+..+..|..++.... -...+.++|+.|+||||+|+.+.+...-....+...|- .++....-..+
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r-----i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence 468999999999999885432 23558899999999999998887632111101000010 11111111110
Q ss_pred HHHH---HHHhccCCCCCCccHHHHHHHHHh-HhCCceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEEEe-cChhh
Q 038637 276 TKSI---LKSIANDQSNNDDDLNLLQEKLKK-QLSGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVVTT-RNLDV 350 (962)
Q Consensus 276 ~~~i---l~~l~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt-R~~~v 350 (962)
...- +..+.+......++...+.+.+.. -..+++-++|+|++...+....+.+...+......+.+|++| +...+
T Consensus 91 ~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kL 170 (620)
T PRK14954 91 DAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (620)
T ss_pred hccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 0000 000000000011122222222211 123455578999996655455566666665444455555444 44444
Q ss_pred Hh-hhCCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChH-HHHHH
Q 038637 351 AN-LTRAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPL-AAKTL 411 (962)
Q Consensus 351 ~~-~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPL-ai~~~ 411 (962)
.. .......+++.+++.++....+.+.+-.. + ..-..+.+..|++.++|..- |+..+
T Consensus 171 l~TI~SRc~~vef~~l~~~ei~~~L~~i~~~e-g---i~I~~eal~~La~~s~Gdlr~al~eL 229 (620)
T PRK14954 171 PATIASRCQRFNFKRIPLDEIQSQLQMICRAE-G---IQIDADALQLIARKAQGSMRDAQSIL 229 (620)
T ss_pred hHHHHhhceEEecCCCCHHHHHHHHHHHHHHc-C---CCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 32 23345679999999999888777654321 1 11235678889999999654 44433
No 117
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.85 E-value=1.8e-05 Score=56.96 Aligned_cols=41 Identities=34% Similarity=0.483 Sum_probs=32.6
Q ss_pred CcccEEEeCCCcCcccccccccCCCcCCeEeccCCCCccccc
Q 038637 615 PRLRVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPE 656 (962)
Q Consensus 615 ~~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~ 656 (962)
++|++|++++| .+..+|..+++|++|++|++++|.|+.+|.
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 46889999988 788888888899999999999998886653
No 118
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.85 E-value=0.00035 Score=80.92 Aligned_cols=199 Identities=15% Similarity=0.087 Sum_probs=110.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSIL 280 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 280 (962)
.++||.+..++.|..++.... -...+.++|+.|+||||+|+.+++...-....+ +..++...+ -+.|.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~r-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~~pCg~C~~----C~~i~ 80 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAGR-----INHAYLFSGPRGCGKTSSARILARSLNCAQGPT---ATPCGVCES----CVALA 80 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---CCcccccHH----HHHhh
Confidence 568999999999999996432 234568999999999999998886321100000 001111100 00000
Q ss_pred HH---------hccCCCCCCccHHHHHHHHHhH-hCCceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEE-EecChh
Q 038637 281 KS---------IANDQSNNDDDLNLLQEKLKKQ-LSGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVV-TTRNLD 349 (962)
Q Consensus 281 ~~---------l~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-TtR~~~ 349 (962)
.. +........++..++.+.+... ..+++-++|+|++...+....+.+...+........+|+ ||....
T Consensus 81 ~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~k 160 (584)
T PRK14952 81 PNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEK 160 (584)
T ss_pred cccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHh
Confidence 00 0000000112222233322211 134556889999976665666666666655444555555 444444
Q ss_pred hHhh-hCCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChH-HHHHHHhhh
Q 038637 350 VANL-TRAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPL-AAKTLGGLL 415 (962)
Q Consensus 350 v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPL-ai~~~~~~L 415 (962)
+... ..-...+++.+++.++..+.+.+.+-.. + .....+....|++.++|.+- |+..+-.++
T Consensus 161 ll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~e-g---i~i~~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 161 VLPTIRSRTHHYPFRLLPPRTMRALIARICEQE-G---VVVDDAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred hHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHc-C---CCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3322 2234679999999999888887655322 1 11224567888999999874 554444433
No 119
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.84 E-value=0.00013 Score=79.92 Aligned_cols=148 Identities=14% Similarity=0.155 Sum_probs=81.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSIL 280 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 280 (962)
.+++|.+...+.+..++.... -..++.++|++|+||||+|+.+++.. ... ...++.+. .. ....+..+
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~-----~~~~lll~G~~G~GKT~la~~l~~~~--~~~---~~~i~~~~-~~-~~~i~~~l 88 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGR-----IPNMLLHSPSPGTGKTTVAKALCNEV--GAE---VLFVNGSD-CR-IDFVRNRL 88 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCC-----CCeEEEeeCcCCCCHHHHHHHHHHHh--Ccc---ceEeccCc-cc-HHHHHHHH
Confidence 568999999999999986432 34677779999999999999998732 211 22333333 11 11111211
Q ss_pred HHhccCCCCCCccHHHHHHHHHhHhCCceEEEEEecCCCC-CccchhhccCCCCCCCCCcEEEEEecChh-hHh-hhCCC
Q 038637 281 KSIANDQSNNDDDLNLLQEKLKKQLSGNKFLLVLDDVWNK-NYNYWSILSCPFGAGAPGSKIVVTTRNLD-VAN-LTRAY 357 (962)
Q Consensus 281 ~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~-~~~~~ 357 (962)
..+.... .+.+.+-++|+||+... .......+...+.....++++|+||.... +.. .....
T Consensus 89 ~~~~~~~----------------~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~ 152 (316)
T PHA02544 89 TRFASTV----------------SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRC 152 (316)
T ss_pred HHHHHhh----------------cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhc
Confidence 1111000 01134557889999543 22222333333333346778888886532 111 11122
Q ss_pred CcccCCCCCHHHHHHHHHH
Q 038637 358 PKYGLKELSDDDCLRVVIQ 376 (962)
Q Consensus 358 ~~~~l~~L~~~~~~~Lf~~ 376 (962)
..+.+...+.++..+++..
T Consensus 153 ~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 153 RVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred eEEEeCCCCHHHHHHHHHH
Confidence 3566667777776665543
No 120
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.82 E-value=0.00033 Score=72.73 Aligned_cols=194 Identities=18% Similarity=0.170 Sum_probs=114.2
Q ss_pred hHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcc----cceEEEEEeCCCCCHHHHHHHHHHHhc
Q 038637 209 EEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRH----FQFKAWACVSEDFDVFRVTKSILKSIA 284 (962)
Q Consensus 209 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----F~~~~wv~v~~~~~~~~~~~~il~~l~ 284 (962)
.++++.++|.... ....+-+.|||.+|.|||++++++.+..-.... --.++.|.....++...+...|+.+++
T Consensus 45 ~L~~L~~Ll~~P~---~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lg 121 (302)
T PF05621_consen 45 ALDRLEELLEYPK---RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALG 121 (302)
T ss_pred HHHHHHHHHhCCc---ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhC
Confidence 4455555565443 357788999999999999999999864321111 114667888889999999999999999
Q ss_pred cCCCCCCccHHHHHHHHHhHhCC-ceEEEEEecCCCC---CccchhhccC---CCCCCCCCcEEEEEecChhhHhhh---
Q 038637 285 NDQSNNDDDLNLLQEKLKKQLSG-NKFLLVLDDVWNK---NYNYWSILSC---PFGAGAPGSKIVVTTRNLDVANLT--- 354 (962)
Q Consensus 285 ~~~~~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~---~~~~~~~l~~---~l~~~~~gs~ilvTtR~~~v~~~~--- 354 (962)
.+.. .......+...+...++. +-=+||+|.+.+- ....-..+.. .+.+.-.=+-|.+-|+..--+-..
T Consensus 122 aP~~-~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~Q 200 (302)
T PF05621_consen 122 APYR-PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQ 200 (302)
T ss_pred cccC-CCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHH
Confidence 8875 444445555555555543 3448899999551 1111122222 222222344566666653221111
Q ss_pred --CCCCcccCCCCCHH-HHHHHHHHhh--cCCCCCCCCcchHHHHHHHHHhcCCChHH
Q 038637 355 --RAYPKYGLKELSDD-DCLRVVIQHS--LGATGFSTNQSLKDVGEKIAKKCKGLPLA 407 (962)
Q Consensus 355 --~~~~~~~l~~L~~~-~~~~Lf~~~a--~~~~~~~~~~~~~~~~~~I~~~c~glPLa 407 (962)
.-..++.++.-+.+ +...|+.... ++-.. ...-..++++..|...++|+.=-
T Consensus 201 La~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~-~S~l~~~~la~~i~~~s~G~iG~ 257 (302)
T PF05621_consen 201 LASRFEPFELPRWELDEEFRRLLASFERALPLRK-PSNLASPELARRIHERSEGLIGE 257 (302)
T ss_pred HHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCC-CCCCCCHHHHHHHHHHcCCchHH
Confidence 11234556555443 4455554322 22221 11224578999999999998643
No 121
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.82 E-value=0.00038 Score=81.53 Aligned_cols=195 Identities=14% Similarity=0.173 Sum_probs=108.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcc-c---ceEEEE-EeCCCCCHHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRH-F---QFKAWA-CVSEDFDVFRV 275 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-F---~~~~wv-~v~~~~~~~~~ 275 (962)
.+++|.+..++.|..++.... -.+.+.++|+.|+||||+|+.++...--... . .|.... +....++..
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r-----l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvi-- 90 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK-----ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDII-- 90 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEE--
Confidence 468999999999999996542 2456679999999999999988763110000 0 000000 000011100
Q ss_pred HHHHHHHhccCCCCCCccHHHHHHHHHhH-hCCceEEEEEecCCCCCccchhhccCCCCCCCCCcEEE-EEecChhhHh-
Q 038637 276 TKSILKSIANDQSNNDDDLNLLQEKLKKQ-LSGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIV-VTTRNLDVAN- 352 (962)
Q Consensus 276 ~~~il~~l~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~il-vTtR~~~v~~- 352 (962)
.+.........+.+++.+.+... ..+++-++|+|++.......+..+...+........+| +|++...+..
T Consensus 91 ------eidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~T 164 (725)
T PRK07133 91 ------EMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLT 164 (725)
T ss_pred ------EEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHH
Confidence 00000000112233333333221 23566689999996655556666666555443444444 5555444432
Q ss_pred hhCCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChH-HHHHHH
Q 038637 353 LTRAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPL-AAKTLG 412 (962)
Q Consensus 353 ~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPL-ai~~~~ 412 (962)
.......+++.+++.++....+...+-..+ -....+.+..|++.++|.+- |+..+-
T Consensus 165 I~SRcq~ieF~~L~~eeI~~~L~~il~keg----I~id~eAl~~LA~lS~GslR~AlslLe 221 (725)
T PRK07133 165 ILSRVQRFNFRRISEDEIVSRLEFILEKEN----ISYEKNALKLIAKLSSGSLRDALSIAE 221 (725)
T ss_pred HHhhceeEEccCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 222345799999999999988877543211 11224567889999999774 444433
No 122
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.81 E-value=0.00053 Score=78.28 Aligned_cols=184 Identities=14% Similarity=0.119 Sum_probs=105.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccch---hc----------------ccceE
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRV---QR----------------HFQFK 261 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~----------------~F~~~ 261 (962)
.+++|.+..++.|.+++.... -.....++|+.|+||||+|+.++....- .. .|...
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-----i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~ 90 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-----VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDL 90 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcE
Confidence 468899999999999995532 2345678999999999999988763110 00 01111
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhccCCCCCCccHHHHHHHHHhH-hCCceEEEEEecCCCCCccchhhccCCCCCCCCCcE
Q 038637 262 AWACVSEDFDVFRVTKSILKSIANDQSNNDDDLNLLQEKLKKQ-LSGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSK 340 (962)
Q Consensus 262 ~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ 340 (962)
.++..+... ...+...+.+.+... ..+++-++|+|++..-+....+.+...+........
T Consensus 91 ~eidaas~~-------------------gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v 151 (486)
T PRK14953 91 IEIDAASNR-------------------GIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTI 151 (486)
T ss_pred EEEeCccCC-------------------CHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeE
Confidence 111111110 111122222222211 135667999999965544445555555544434455
Q ss_pred EEEEe-cChhhHhh-hCCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHHHHHH
Q 038637 341 IVVTT-RNLDVANL-TRAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAAKTLG 412 (962)
Q Consensus 341 ilvTt-R~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~ 412 (962)
+|++| +...+... ......+.+.+++.++....+.+.+-..+ . ....+.+..|++.++|.+-.+....
T Consensus 152 ~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~eg-i---~id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 152 FILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEK-I---EYEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred EEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 55544 43333321 22335688999999999888877653221 1 2234667788999999776544443
No 123
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.79 E-value=0.00016 Score=88.29 Aligned_cols=179 Identities=15% Similarity=0.163 Sum_probs=95.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcc------cceEEE-EEeCCCCCHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRH------FQFKAW-ACVSEDFDVF 273 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~------F~~~~w-v~v~~~~~~~ 273 (962)
.++|||+.++.++++.|.... ..-+.++|++|+||||+|+.+++. +... ....+| +..+.-
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~------~~n~lLvG~pGvGKTal~~~La~~--i~~~~v~~~l~~~~i~~l~l~~l---- 254 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR------QNNPILTGEAGVGKTAVVEGLALR--IAAGDVPPALRNVRLLSLDLGLL---- 254 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC------cCceeEECCCCCCHHHHHHHHHHH--HhhCCCCccccCCeEEEeehhhh----
Confidence 468999999999999986543 234569999999999999999873 2111 122333 222110
Q ss_pred HHHHHHHHHhccCCCCCCccHH-HHHHHHHhHh-CCceEEEEEecCCCCC-------ccchh-hccCCCCCCCCC-cEEE
Q 038637 274 RVTKSILKSIANDQSNNDDDLN-LLQEKLKKQL-SGNKFLLVLDDVWNKN-------YNYWS-ILSCPFGAGAPG-SKIV 342 (962)
Q Consensus 274 ~~~~~il~~l~~~~~~~~~~~~-~~~~~l~~~l-~~kr~LlVlDdv~~~~-------~~~~~-~l~~~l~~~~~g-s~il 342 (962)
..+.. ...+.+ .+...+.+.- .+++.+|++|++..-. ..+-. .+...+ ..| -++|
T Consensus 255 ---------~ag~~--~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l---~~G~l~~I 320 (852)
T TIGR03345 255 ---------QAGAS--VKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPAL---ARGELRTI 320 (852)
T ss_pred ---------hcccc--cchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHh---hCCCeEEE
Confidence 00000 111221 2222222221 2468999999985421 11111 122222 233 4555
Q ss_pred EEecChhhHhh-------hCCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCCh
Q 038637 343 VTTRNLDVANL-------TRAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLP 405 (962)
Q Consensus 343 vTtR~~~v~~~-------~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glP 405 (962)
-||...+.... ..-...+.+++++.++..+++....-.......-.-..+....+++.+.++.
T Consensus 321 gaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 321 AATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred EecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 55554332111 1233579999999999999975443211111112233556666777776544
No 124
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.77 E-value=0.00021 Score=75.45 Aligned_cols=161 Identities=12% Similarity=0.116 Sum_probs=79.6
Q ss_pred ccccchhhHHHHHHHHhc---------CCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCH
Q 038637 202 EVYGREKEEEEIVELLLN---------DGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDV 272 (962)
Q Consensus 202 ~~vGr~~~~~~l~~~L~~---------~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~ 272 (962)
.++|.+..+++|.+.... ..-...+....+.++|++|+||||+|+.++....-.+.-....++.++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~--- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA--- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH---
Confidence 478988877766543211 11111235567889999999999999999763211111111123333211
Q ss_pred HHHHHHHHHHhccCCCCCCccHHHHHHHHHhHhCCceEEEEEecCCCCC--------ccchhhccCCCCCCCCCcEEEEE
Q 038637 273 FRVTKSILKSIANDQSNNDDDLNLLQEKLKKQLSGNKFLLVLDDVWNKN--------YNYWSILSCPFGAGAPGSKIVVT 344 (962)
Q Consensus 273 ~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--------~~~~~~l~~~l~~~~~gs~ilvT 344 (962)
++ ....-+ .......+.+... . .-+|++|++..-. ....+.+...+........+|++
T Consensus 84 -~l----~~~~~g------~~~~~~~~~~~~a-~--~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila 149 (261)
T TIGR02881 84 -DL----VGEYIG------HTAQKTREVIKKA-L--GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILA 149 (261)
T ss_pred -Hh----hhhhcc------chHHHHHHHHHhc-c--CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEec
Confidence 11 111100 1111222222222 1 2488999995411 11223333333333233355555
Q ss_pred ecChhhHhh-------hC-CCCcccCCCCCHHHHHHHHHHhhc
Q 038637 345 TRNLDVANL-------TR-AYPKYGLKELSDDDCLRVVIQHSL 379 (962)
Q Consensus 345 tR~~~v~~~-------~~-~~~~~~l~~L~~~~~~~Lf~~~a~ 379 (962)
+...+.... .. -...+.+++++.++..+++.+.+-
T Consensus 150 ~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 150 GYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred CCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 544332110 01 123578899999999998887653
No 125
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.77 E-value=7.7e-05 Score=81.04 Aligned_cols=60 Identities=20% Similarity=0.275 Sum_probs=27.0
Q ss_pred CCcccEEEeCCCcCcccccccccCCCcCCeEeccC-CCCccccccccccccCcEEeeCCCccccccc
Q 038637 614 LPRLRVFSLCGYCNIFNLPNEIGNLKHLRCLNLSR-TRIQILPESINSLYNLHTILLENCWELKKLC 679 (962)
Q Consensus 614 l~~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~-~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp 679 (962)
+++++.|++++| .+..+|. + ..+|+.|.+++ +.++.+|..+. .+|++|++++|..+..+|
T Consensus 51 ~~~l~~L~Is~c-~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP 111 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLP 111 (426)
T ss_pred hcCCCEEEeCCC-CCcccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccc
Confidence 455555555555 4555551 1 12355555544 22334443331 345555555444343343
No 126
>CHL00181 cbbX CbbX; Provisional
Probab=97.76 E-value=0.00058 Score=72.53 Aligned_cols=135 Identities=14% Similarity=0.064 Sum_probs=71.8
Q ss_pred cEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCccHHHHHHHHHhHhCC
Q 038637 228 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSIANDQSNNDDDLNLLQEKLKKQLSG 307 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 307 (962)
...+.++|++|+||||+|+.++......+.-...-|+.++. .+ +...+.+.. .......+.+.
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~----l~~~~~g~~------~~~~~~~l~~a--- 121 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DD----LVGQYIGHT------APKTKEVLKKA--- 121 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HH----HHHHHhccc------hHHHHHHHHHc---
Confidence 34588999999999999999976321111112222444441 12 222221111 11122223222
Q ss_pred ceEEEEEecCCCC---------CccchhhccCCCCCCCCCcEEEEEecChhhHhhh--------CCCCcccCCCCCHHHH
Q 038637 308 NKFLLVLDDVWNK---------NYNYWSILSCPFGAGAPGSKIVVTTRNLDVANLT--------RAYPKYGLKELSDDDC 370 (962)
Q Consensus 308 kr~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~--------~~~~~~~l~~L~~~~~ 370 (962)
..-+|++|++..- ..+....+...+.......+||+++....+.... .-...+.+++++.++.
T Consensus 122 ~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el 201 (287)
T CHL00181 122 MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEEL 201 (287)
T ss_pred cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHH
Confidence 2348999999531 1112223333343443456777777654433221 1234688999999999
Q ss_pred HHHHHHhhc
Q 038637 371 LRVVIQHSL 379 (962)
Q Consensus 371 ~~Lf~~~a~ 379 (962)
.+++...+-
T Consensus 202 ~~I~~~~l~ 210 (287)
T CHL00181 202 LQIAKIMLE 210 (287)
T ss_pred HHHHHHHHH
Confidence 988877653
No 127
>PF14516 AAA_35: AAA-like domain
Probab=97.74 E-value=0.0044 Score=67.65 Aligned_cols=201 Identities=12% Similarity=0.092 Sum_probs=116.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCC-----CCHHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSED-----FDVFRV 275 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~-----~~~~~~ 275 (962)
...|.|...-+++.+.+... ...+.|.|+..+|||+|..++.+..+.. .+ ..+++++..- .+....
T Consensus 11 ~~Yi~R~~~e~~~~~~i~~~-------G~~~~I~apRq~GKTSll~~l~~~l~~~-~~-~~v~id~~~~~~~~~~~~~~f 81 (331)
T PF14516_consen 11 PFYIERPPAEQECYQEIVQP-------GSYIRIKAPRQMGKTSLLLRLLERLQQQ-GY-RCVYIDLQQLGSAIFSDLEQF 81 (331)
T ss_pred CcccCchHHHHHHHHHHhcC-------CCEEEEECcccCCHHHHHHHHHHHHHHC-CC-EEEEEEeecCCCcccCCHHHH
Confidence 34678987777788777543 3589999999999999999998743222 33 3456766542 245555
Q ss_pred HHHHHHHhccCCCC----------CCccHHHHHHHHHhHh---CCceEEEEEecCCCCCc------cchhhccCCCCCCC
Q 038637 276 TKSILKSIANDQSN----------NDDDLNLLQEKLKKQL---SGNKFLLVLDDVWNKNY------NYWSILSCPFGAGA 336 (962)
Q Consensus 276 ~~~il~~l~~~~~~----------~~~~~~~~~~~l~~~l---~~kr~LlVlDdv~~~~~------~~~~~l~~~l~~~~ 336 (962)
++.++..+...-.. ...........+.+++ .+++.+|++|++..--. +-+..+........
T Consensus 82 ~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~ 161 (331)
T PF14516_consen 82 LRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRK 161 (331)
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcc
Confidence 55555444332210 0112223333444432 26899999999943110 11111211111100
Q ss_pred ----CCcEEEEEecCh---hhHhh----hCCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCCh
Q 038637 337 ----PGSKIVVTTRNL---DVANL----TRAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLP 405 (962)
Q Consensus 337 ----~gs~ilvTtR~~---~v~~~----~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glP 405 (962)
..+-.++..... ...+. ......++|++++.+|...|...+-.. .-....++|...+||+|
T Consensus 162 ~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~--------~~~~~~~~l~~~tgGhP 233 (331)
T PF14516_consen 162 NNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE--------FSQEQLEQLMDWTGGHP 233 (331)
T ss_pred cCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc--------CCHHHHHHHHHHHCCCH
Confidence 111122222211 11111 112346889999999999999876321 11233889999999999
Q ss_pred HHHHHHHhhhcCC
Q 038637 406 LAAKTLGGLLRGK 418 (962)
Q Consensus 406 Lai~~~~~~L~~~ 418 (962)
..+..++..+...
T Consensus 234 ~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 234 YLVQKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHHHHc
Confidence 9999999998664
No 128
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.73 E-value=4e-06 Score=86.34 Aligned_cols=212 Identities=21% Similarity=0.183 Sum_probs=111.1
Q ss_pred hCCCCcccEEEeCCCcCc----ccccc-------cccCCCcCCeEeccCCCCc-----cccccccccccCcEEeeCCCcc
Q 038637 611 LNHLPRLRVFSLCGYCNI----FNLPN-------EIGNLKHLRCLNLSRTRIQ-----ILPESINSLYNLHTILLENCWE 674 (962)
Q Consensus 611 l~~l~~Lr~L~L~~~~~~----~~lp~-------~i~~L~~Lr~L~Ls~~~i~-----~lp~~i~~L~~L~~L~L~~~~~ 674 (962)
+.+-+.|+..++++- .. ..+|+ .+-.+++|++|+||.|-+. .+-.-+.+++.|++|.|.+| .
T Consensus 54 L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~-G 131 (382)
T KOG1909|consen 54 LASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNC-G 131 (382)
T ss_pred HhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcC-C
Confidence 455566777666653 11 12232 2334557777777777654 22334566788888888877 3
Q ss_pred cccc--------------chhcccCCCccEEecCCCCCccccCC-----CCCCCCCCCccCCeEeCCCCCCCcccccCcc
Q 038637 675 LKKL--------------CKDMGNLTKLRHLRNSDAGLLEEMPK-----GFGKLTSLLTLGRFVVGKDSGSGLRELKSLT 735 (962)
Q Consensus 675 l~~l--------------p~~i~~L~~L~~L~l~~~~~~~~~p~-----~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~ 735 (962)
++.. ...+..-++||.+..+.|. +...+. .+...+.|+.++..+.+..
T Consensus 132 lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr-len~ga~~~A~~~~~~~~leevr~~qN~I~------------ 198 (382)
T KOG1909|consen 132 LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR-LENGGATALAEAFQSHPTLEEVRLSQNGIR------------ 198 (382)
T ss_pred CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc-cccccHHHHHHHHHhccccceEEEeccccc------------
Confidence 3221 1223455678888777765 333221 1333333333322221100
Q ss_pred cCCCeEEEeccCCCCChhhhhhhcCcCCcCCCceEEeccCCCCCCccchhhHHhhhccCCCCCCcCeEEEeecCCCC---
Q 038637 736 HLQGTLRISKLENVEDVGDACEAQLNNKVNLRTLLLDWSARDVQNLDQCEFETRVLSMLKPHRDVQELTIRGYGGTK--- 812 (962)
Q Consensus 736 ~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--- 812 (962)
......+...+..+++|+.|+|..+... .. -....-..++..++|+.|++.+|....
T Consensus 199 --------------~eG~~al~eal~~~~~LevLdl~DNtft---~e---gs~~LakaL~s~~~L~El~l~dcll~~~Ga 258 (382)
T KOG1909|consen 199 --------------PEGVTALAEALEHCPHLEVLDLRDNTFT---LE---GSVALAKALSSWPHLRELNLGDCLLENEGA 258 (382)
T ss_pred --------------CchhHHHHHHHHhCCcceeeecccchhh---hH---HHHHHHHHhcccchheeecccccccccccH
Confidence 0111233445566677777777655411 00 012233445556677777777764431
Q ss_pred --CCcCcCCCCCCCccEEEEeCCCCCCC----C-CCCCCCCCcCeEeecCCCC
Q 038637 813 --FPIWLGDSSFSKLVNLKFGYCRMCTS----L-PSVGQLPLLKHLKISGMDR 858 (962)
Q Consensus 813 --~p~~~~~~~l~~L~~L~L~~~~~~~~----l-~~l~~lp~L~~L~L~~~~~ 858 (962)
+-.-+. ...|+|+.|.+.+|.+... + -.+...|.|+.|.|++|..
T Consensus 259 ~a~~~al~-~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 259 IAFVDALK-ESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHHHh-ccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 111122 2367788888888876521 1 1345578888888887753
No 129
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.72 E-value=0.0015 Score=66.13 Aligned_cols=189 Identities=18% Similarity=0.176 Sum_probs=98.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSIL 280 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 280 (962)
.+|||.++-++.+.-.+..... .+..+-.|.++|++|.||||||.-+++. ....+. ++-+.......-+..|+
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~-r~e~lDHvLl~GPPGlGKTTLA~IIA~E--mgvn~k----~tsGp~leK~gDlaaiL 98 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKK-RGEALDHVLLFGPPGLGKTTLAHIIANE--LGVNLK----ITSGPALEKPGDLAAIL 98 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHh-cCCCcCeEEeeCCCCCcHHHHHHHHHHH--hcCCeE----ecccccccChhhHHHHH
Confidence 5699999988888777754432 3457889999999999999999999984 332221 22222222222222333
Q ss_pred HHhccCCCCCCccHHHHH----HHHHhHhCCceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEEEecChhhHhhhC-
Q 038637 281 KSIANDQSNNDDDLNLLQ----EKLKKQLSGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVVTTRNLDVANLTR- 355 (962)
Q Consensus 281 ~~l~~~~~~~~~~~~~~~----~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~- 355 (962)
..+....---.++...+. +.+--.+.+-+.=|++.--.. -..+.-.++ +-+-|=-|||.-.+.+-..
T Consensus 99 t~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~-----Arsv~ldLp---pFTLIGATTr~G~lt~PLrd 170 (332)
T COG2255 99 TNLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPA-----ARSIRLDLP---PFTLIGATTRAGMLTNPLRD 170 (332)
T ss_pred hcCCcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCc-----cceEeccCC---CeeEeeeccccccccchhHH
Confidence 332211100001111111 111112222222222221100 011111121 2233445888644333222
Q ss_pred -CCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHH
Q 038637 356 -AYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAA 408 (962)
Q Consensus 356 -~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai 408 (962)
-.-+.+++-.+.+|-.++..+.+-.- .-+-.++.+.+|+++..|.|--.
T Consensus 171 RFGi~~rlefY~~~eL~~Iv~r~a~~l----~i~i~~~~a~eIA~rSRGTPRIA 220 (332)
T COG2255 171 RFGIIQRLEFYTVEELEEIVKRSAKIL----GIEIDEEAALEIARRSRGTPRIA 220 (332)
T ss_pred hcCCeeeeecCCHHHHHHHHHHHHHHh----CCCCChHHHHHHHHhccCCcHHH
Confidence 12356788899999999988876221 12233577899999999999533
No 130
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.72 E-value=0.00068 Score=77.32 Aligned_cols=179 Identities=14% Similarity=0.154 Sum_probs=107.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccc---hhc-----------------ccce
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDR---VQR-----------------HFQF 260 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~---~~~-----------------~F~~ 260 (962)
.++||-+..++.|...+.... -..+..++|+.|+||||+|+.+.+..- -.. |++
T Consensus 14 deiiGqe~v~~~L~~~I~~gr-----l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~d- 87 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNR-----LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHID- 87 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCe-
Confidence 468999999999999885432 234668999999999999997765310 000 011
Q ss_pred EEEEEeCCCCCHHHHHHHHHHHhccCCCCCCccHHHHHHHHHhH----hCCceEEEEEecCCCCCccchhhccCCCCCCC
Q 038637 261 KAWACVSEDFDVFRVTKSILKSIANDQSNNDDDLNLLQEKLKKQ----LSGNKFLLVLDDVWNKNYNYWSILSCPFGAGA 336 (962)
Q Consensus 261 ~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~ 336 (962)
.+.+..+.. ...+.+.+.+... ..+++-++|+|++...+....+.+...+....
T Consensus 88 v~eldaas~----------------------~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp 145 (535)
T PRK08451 88 IIEMDAASN----------------------RGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPP 145 (535)
T ss_pred EEEeccccc----------------------cCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcC
Confidence 111111110 1122222222210 12456688999997666555666665555444
Q ss_pred CCcEEEEEecCh-hhHh-hhCCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHHHHH
Q 038637 337 PGSKIVVTTRNL-DVAN-LTRAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAAKTL 411 (962)
Q Consensus 337 ~gs~ilvTtR~~-~v~~-~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~ 411 (962)
..+++|++|.+. .+.. .......+++.+++.++....+.+.+-.. +. ...++.+..|++.++|.+--+...
T Consensus 146 ~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~E-Gi---~i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 146 SYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKE-GV---SYEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred CceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHc-CC---CCCHHHHHHHHHHcCCcHHHHHHH
Confidence 566666666552 2221 11223578999999999988887655322 21 123567889999999998554444
No 131
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.71 E-value=0.00053 Score=77.73 Aligned_cols=195 Identities=16% Similarity=0.193 Sum_probs=104.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhc----ccceEEEE-----EeCCCCC
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQR----HFQFKAWA-----CVSEDFD 271 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~F~~~~wv-----~v~~~~~ 271 (962)
.+++|.+..++.|.+++.... -...+.++|+.|+||||+|+.+.+...-.. .-.|.... .....++
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~-----i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR-----AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 568999999999999985432 235678999999999999988876321000 00000000 0000000
Q ss_pred HHHHHHHHHHHhccCCCCCCccHHHHHHHHHhH-hCCceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEEEecC-hh
Q 038637 272 VFRVTKSILKSIANDQSNNDDDLNLLQEKLKKQ-LSGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVVTTRN-LD 349 (962)
Q Consensus 272 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~ 349 (962)
.. .+.+.......+...+.+.+... ..+++-++|+|++........+.+...+........+|++|.. ..
T Consensus 92 ~~--------~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~k 163 (451)
T PRK06305 92 VL--------EIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHK 163 (451)
T ss_pred eE--------EeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHh
Confidence 00 00000000111222222222111 1356668899998554433445555555544445566666533 33
Q ss_pred hHhh-hCCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChH-HHHHHH
Q 038637 350 VANL-TRAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPL-AAKTLG 412 (962)
Q Consensus 350 v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPL-ai~~~~ 412 (962)
+... ......+++.++++++....+.+.+-.. + -....+.+..|++.++|.+- |+..+-
T Consensus 164 l~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~e-g---~~i~~~al~~L~~~s~gdlr~a~~~Le 224 (451)
T PRK06305 164 IPGTILSRCQKMHLKRIPEETIIDKLALIAKQE-G---IETSREALLPIARAAQGSLRDAESLYD 224 (451)
T ss_pred cchHHHHhceEEeCCCCCHHHHHHHHHHHHHHc-C---CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3221 2233568999999999988887754321 1 11235678889999999764 444443
No 132
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.71 E-value=0.00067 Score=79.72 Aligned_cols=197 Identities=13% Similarity=0.148 Sum_probs=106.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSIL 280 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 280 (962)
.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+++...-. ..+......++ .-...+.+.
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-----l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~-~~~~~~~~~Cg----~C~~C~~i~ 85 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-----IAPAYLFTGPRGTGKTSSARILAKSLNCL-NSDKPTPEPCG----KCELCRAIA 85 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCChHHHHHHHHHHhcCC-CcCCCCCCCCc----ccHHHHHHh
Confidence 468899999999999986542 23567899999999999999998742111 11000000011 111111111
Q ss_pred HHhccCC----CCCCccHHHHHHHHHhH----hCCceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEEEecC-hhhH
Q 038637 281 KSIANDQ----SNNDDDLNLLQEKLKKQ----LSGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVVTTRN-LDVA 351 (962)
Q Consensus 281 ~~l~~~~----~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~ 351 (962)
.....+. .......+.+.+.+... ..+++-++|+|++...+...+..+...+........+|++|.+ ..+.
T Consensus 86 ~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~ll 165 (620)
T PRK14948 86 AGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVL 165 (620)
T ss_pred cCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhh
Confidence 1111000 00111222222222111 1245568899999665555566666655544344555544443 3332
Q ss_pred hh-hCCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHHHHH
Q 038637 352 NL-TRAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAAKTL 411 (962)
Q Consensus 352 ~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~ 411 (962)
.. ......+++..++.++....+.+.+-.. + .....+.+..|++.++|.+..+...
T Consensus 166 pTIrSRc~~~~f~~l~~~ei~~~L~~ia~ke-g---i~is~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 166 PTIISRCQRFDFRRIPLEAMVQHLSEIAEKE-S---IEIEPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred HHHHhheeEEEecCCCHHHHHHHHHHHHHHh-C---CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 22 2233567888999988887776654221 1 1122456888999999988655433
No 133
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.70 E-value=0.00021 Score=74.89 Aligned_cols=167 Identities=17% Similarity=0.171 Sum_probs=102.3
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHH
Q 038637 200 EAEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSI 279 (962)
Q Consensus 200 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i 279 (962)
++.|.+|+.++..+..++..... .-+.+|.|+|-.|.|||.+.+++.+.. .. ..+|+++-+.|+.+-++..|
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~---~~PS~~~iyG~sgTGKT~~~r~~l~~~--n~---~~vw~n~~ecft~~~lle~I 76 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSC---TIPSIVHIYGHSGTGKTYLVRQLLRKL--NL---ENVWLNCVECFTYAILLEKI 76 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCc---ccceeEEEeccCCCchhHHHHHHHhhc--CC---cceeeehHHhccHHHHHHHH
Confidence 45678999999999998865432 245667999999999999999999854 21 35799999999999999999
Q ss_pred HHHhc-cCCCCCC-----ccHHHHHHHHHh--HhC--CceEEEEEecCCCCCccchhhc-----cCCCCCCCCCcEEEEE
Q 038637 280 LKSIA-NDQSNND-----DDLNLLQEKLKK--QLS--GNKFLLVLDDVWNKNYNYWSIL-----SCPFGAGAPGSKIVVT 344 (962)
Q Consensus 280 l~~l~-~~~~~~~-----~~~~~~~~~l~~--~l~--~kr~LlVlDdv~~~~~~~~~~l-----~~~l~~~~~gs~ilvT 344 (962)
+.+.+ .+..... .+.......+.+ ..+ ++.++||||++..- .+.+.+ .....-.....-+|++
T Consensus 77 L~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~l--rD~~a~ll~~l~~L~el~~~~~i~iil 154 (438)
T KOG2543|consen 77 LNKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADAL--RDMDAILLQCLFRLYELLNEPTIVIIL 154 (438)
T ss_pred HHHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhh--hccchHHHHHHHHHHHHhCCCceEEEE
Confidence 99996 2222111 111222233333 122 46899999999331 121111 1100001112334444
Q ss_pred ecCh--hhHh-hhCCCC--cccCCCCCHHHHHHHHHH
Q 038637 345 TRNL--DVAN-LTRAYP--KYGLKELSDDDCLRVVIQ 376 (962)
Q Consensus 345 tR~~--~v~~-~~~~~~--~~~l~~L~~~~~~~Lf~~ 376 (962)
+-.. ..-. .+++.. ++..+..+.+|..+++.+
T Consensus 155 s~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~ 191 (438)
T KOG2543|consen 155 SAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSR 191 (438)
T ss_pred eccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhc
Confidence 4332 1111 123322 466788899999888855
No 134
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.70 E-value=0.00078 Score=79.19 Aligned_cols=179 Identities=17% Similarity=0.174 Sum_probs=106.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccch---------------------hcccc
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRV---------------------QRHFQ 259 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~---------------------~~~F~ 259 (962)
.+++|.+..++.|..++.... -...+.++|+.|+||||+|+.+.....- ..+|+
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~-----l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n 91 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNK-----LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYN 91 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCc
Confidence 468999999999999996432 2456789999999999999887663210 01222
Q ss_pred eEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCccHHHHHHHHHhH-hCCceEEEEEecCCCCCccchhhccCCCCCCCCC
Q 038637 260 FKAWACVSEDFDVFRVTKSILKSIANDQSNNDDDLNLLQEKLKKQ-LSGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPG 338 (962)
Q Consensus 260 ~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~g 338 (962)
. ..++.+..... .+...+.+.+... ..+++=++|+|++...+...++.+...+......
T Consensus 92 ~-~~ld~~~~~~v-------------------d~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~ 151 (614)
T PRK14971 92 I-HELDAASNNSV-------------------DDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSY 151 (614)
T ss_pred e-EEecccccCCH-------------------HHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCC
Confidence 1 11111111111 1111111111110 1244558899999766555666676666554455
Q ss_pred cEEEE-EecChhhHhh-hCCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHH
Q 038637 339 SKIVV-TTRNLDVANL-TRAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAA 408 (962)
Q Consensus 339 s~ilv-TtR~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai 408 (962)
+.+|+ ||+...+... ......+++.++++++....+.+.+-.. +. ....+.+..|++.++|..--+
T Consensus 152 tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~e-gi---~i~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 152 AIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKE-GI---TAEPEALNVIAQKADGGMRDA 219 (614)
T ss_pred eEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHc-CC---CCCHHHHHHHHHHcCCCHHHH
Confidence 66555 4444444332 2234679999999999998887755321 11 122456788999999977543
No 135
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.69 E-value=1.7e-06 Score=91.00 Aligned_cols=307 Identities=17% Similarity=0.162 Sum_probs=172.1
Q ss_pred CCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCccccc-ccc-cCCCcCCeEeccCC-CCc--cccccc
Q 038637 584 EHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFNLP-NEI-GNLKHLRCLNLSRT-RIQ--ILPESI 658 (962)
Q Consensus 584 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~lp-~~i-~~L~~Lr~L~Ls~~-~i~--~lp~~i 658 (962)
..||.|.+.+..... .+-...+..+++++..|++.+|..+++-. .++ ..+..|++|+|..| .++ .|-...
T Consensus 138 g~lk~LSlrG~r~v~-----~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la 212 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVG-----DSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLA 212 (483)
T ss_pred cccccccccccccCC-----cchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHH
Confidence 457778777764322 12233456789999999999996555432 223 46889999999984 454 222234
Q ss_pred cccccCcEEeeCCCccccc--cchhcccCCCccEEecCCCCCccccCCCCCCCCCCCccCCeEeCCCCCCCcccccCccc
Q 038637 659 NSLYNLHTILLENCWELKK--LCKDMGNLTKLRHLRNSDAGLLEEMPKGFGKLTSLLTLGRFVVGKDSGSGLRELKSLTH 736 (962)
Q Consensus 659 ~~L~~L~~L~L~~~~~l~~--lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~ 736 (962)
..+++|.+|++++|..+.. +..-.....+|+.+.+.||.- .+ ++.|..... ....
T Consensus 213 ~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e---~~--------le~l~~~~~------------~~~~ 269 (483)
T KOG4341|consen 213 EGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLE---LE--------LEALLKAAA------------YCLE 269 (483)
T ss_pred HhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhccccc---cc--------HHHHHHHhc------------cChH
Confidence 4689999999999976654 111123334444444444321 00 111100000 0000
Q ss_pred CCCeEEEeccCCCCChhhhhhhcCcCCcCCCceEEeccCCCCCCccchhhHHhhhccC-CCCCCcCeEEEeecCC-CCCC
Q 038637 737 LQGTLRISKLENVEDVGDACEAQLNNKVNLRTLLLDWSARDVQNLDQCEFETRVLSML-KPHRDVQELTIRGYGG-TKFP 814 (962)
Q Consensus 737 L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~-~~~p 814 (962)
+. ++....+..+.+. .....-..+..|+.|..+.+. + .+...+..+ ..+++|+.|.+.+++. +..-
T Consensus 270 i~-~lnl~~c~~lTD~--~~~~i~~~c~~lq~l~~s~~t-~--------~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ 337 (483)
T KOG4341|consen 270 IL-KLNLQHCNQLTDE--DLWLIACGCHALQVLCYSSCT-D--------ITDEVLWALGQHCHNLQVLELSGCQQFSDRG 337 (483)
T ss_pred hh-ccchhhhccccch--HHHHHhhhhhHhhhhcccCCC-C--------CchHHHHHHhcCCCceEEEeccccchhhhhh
Confidence 00 1111111111111 111222344567777666554 1 122333333 3568899999988752 1110
Q ss_pred cCcCCCCCCCccEEEEeCCCCCCC--CC-CCCCCCCcCeEeecCCCCceEeCccccCCCCCCCCCCcceeeccccccccc
Q 038637 815 IWLGDSSFSKLVNLKFGYCRMCTS--LP-SVGQLPLLKHLKISGMDRVKSVGLEFYGSSCSVPFPSLETLSFSDMREWEE 891 (962)
Q Consensus 815 ~~~~~~~l~~L~~L~L~~~~~~~~--l~-~l~~lp~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~ 891 (962)
-..-..+.+.|+.+++..|....+ +- .-.++|.|+.|.+++|..+...+..... .+..+...|+.|.+.+++.+++
T Consensus 338 ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~-~~~c~~~~l~~lEL~n~p~i~d 416 (483)
T KOG4341|consen 338 FTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLS-SSSCSLEGLEVLELDNCPLITD 416 (483)
T ss_pred hhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhh-hccccccccceeeecCCCCchH
Confidence 001113678899999999887633 22 2347899999999999877665332221 1223478899999999987776
Q ss_pred cccccCCccccCcCCccceEeEccCCCccccC----CCCCCCcceEEEc
Q 038637 892 WISCGAGQEVDEVFPKLRKLSLFNCYKLQGTL----PKRLLLLEKLVIK 936 (962)
Q Consensus 892 ~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~l----p~~l~~L~~L~i~ 936 (962)
-.. .....+++|+.+++..|...+..- -.++|+++...+.
T Consensus 417 ~~L-----e~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~~ 460 (483)
T KOG4341|consen 417 ATL-----EHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAYF 460 (483)
T ss_pred HHH-----HHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhhc
Confidence 433 224468999999999997665211 1466776655443
No 136
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.69 E-value=0.00022 Score=86.52 Aligned_cols=155 Identities=19% Similarity=0.256 Sum_probs=83.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccc---hhccc-ceEEEEEeCCCCCHHHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDR---VQRHF-QFKAWACVSEDFDVFRVT 276 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~---~~~~F-~~~~wv~v~~~~~~~~~~ 276 (962)
++++||+++++++++.|.... ..-+.++|++|+|||++|+.+++... +...+ ...+|.. +...+
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~------~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~-----~~~~l- 249 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK------KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL-----DMGSL- 249 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC------CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe-----cHHHH-
Confidence 468999999999999885543 23457999999999999999987321 11111 2334321 11111
Q ss_pred HHHHHHhccCCCCCCccHHHHHHHHHhHh-CCceEEEEEecCCCCC---------ccchhhccCCCCCCCCC-cEEEEEe
Q 038637 277 KSILKSIANDQSNNDDDLNLLQEKLKKQL-SGNKFLLVLDDVWNKN---------YNYWSILSCPFGAGAPG-SKIVVTT 345 (962)
Q Consensus 277 ~~il~~l~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~---------~~~~~~l~~~l~~~~~g-s~ilvTt 345 (962)
+. +.. ...+.+.....+.+.+ +.++.+|++|++..-. .+.-+.+...+. .| -++|-+|
T Consensus 250 ---~a---~~~--~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~---~g~i~~IgaT 318 (731)
T TIGR02639 250 ---LA---GTK--YRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS---SGKLRCIGST 318 (731)
T ss_pred ---hh---hcc--ccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh---CCCeEEEEec
Confidence 10 000 1112222222333322 3467899999985210 111122332222 23 2444444
Q ss_pred cChhhHh-------hhCCCCcccCCCCCHHHHHHHHHHhh
Q 038637 346 RNLDVAN-------LTRAYPKYGLKELSDDDCLRVVIQHS 378 (962)
Q Consensus 346 R~~~v~~-------~~~~~~~~~l~~L~~~~~~~Lf~~~a 378 (962)
-..+... ...-...+.+++++.++..+++....
T Consensus 319 t~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 319 TYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred CHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 4322111 11123568999999999999998654
No 137
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.64 E-value=9.6e-05 Score=82.46 Aligned_cols=180 Identities=15% Similarity=0.145 Sum_probs=96.1
Q ss_pred CCccccchhhHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCH
Q 038637 200 EAEVYGREKEEEEIVELLLNDGL-------RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDV 272 (962)
Q Consensus 200 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~ 272 (962)
.+++.|++..+++|.+.+...-. .+-...+-|.++|++|+|||++|+++++. .... |+.++.
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~--~~~~-----~i~v~~---- 198 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE--TNAT-----FIRVVG---- 198 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHH--hCCC-----EEEeeh----
Confidence 35789999999999887743211 01124567899999999999999999883 2222 222211
Q ss_pred HHHHHHHHHHhccCCCCCCccHHHHHHHHHhHhCCceEEEEEecCCCC-----------CccchhhccCC---CC--CCC
Q 038637 273 FRVTKSILKSIANDQSNNDDDLNLLQEKLKKQLSGNKFLLVLDDVWNK-----------NYNYWSILSCP---FG--AGA 336 (962)
Q Consensus 273 ~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-----------~~~~~~~l~~~---l~--~~~ 336 (962)
..+ .....+ .....+...+...-...+.+|+|||+..- +...+..+... +. ...
T Consensus 199 ~~l----~~~~~g------~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~ 268 (389)
T PRK03992 199 SEL----VQKFIG------EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR 268 (389)
T ss_pred HHH----hHhhcc------chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC
Confidence 111 111111 01111112222222346789999998431 00111112111 11 112
Q ss_pred CCcEEEEEecChhhHh-hh----CCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCCh
Q 038637 337 PGSKIVVTTRNLDVAN-LT----RAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLP 405 (962)
Q Consensus 337 ~gs~ilvTtR~~~v~~-~~----~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glP 405 (962)
.+..||.||...+... .. .-...+.++..+.++-.++|..+..+..- ..... ...+++.+.|.-
T Consensus 269 ~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~-~~~~~----~~~la~~t~g~s 337 (389)
T PRK03992 269 GNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNL-ADDVD----LEELAELTEGAS 337 (389)
T ss_pred CCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCC-CCcCC----HHHHHHHcCCCC
Confidence 3567777776643221 11 12346889999999999999887643211 11112 355666776643
No 138
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.64 E-value=0.0013 Score=76.27 Aligned_cols=199 Identities=15% Similarity=0.095 Sum_probs=110.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHH-
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSI- 279 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i- 279 (962)
.+++|-+..++.|..++.... -.+.+.++|+.|+||||+|+.+++..--..... ...+....+-..+....
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~-----i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~---~~pC~~C~~C~~i~~~~~ 87 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK-----IANAYIFSGPRGVGKTSSARAFARCLNCVNGPT---PMPCGECSSCKSIDNDNS 87 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhccccCCC---CCCCccchHHHHHHcCCC
Confidence 468999999999999996532 345688999999999999999987421110000 00111111111110000
Q ss_pred --HHHhccCCCCCCccHHHHHHHHHh-HhCCceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEEEecC-hhhHhh-h
Q 038637 280 --LKSIANDQSNNDDDLNLLQEKLKK-QLSGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVVTTRN-LDVANL-T 354 (962)
Q Consensus 280 --l~~l~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~~~-~ 354 (962)
+..+.+.......+..++.+.+.. -..+++-++|+|++...+...++.+...+......+.+|++|.. ..+... .
T Consensus 88 ~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~ 167 (563)
T PRK06647 88 LDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIK 167 (563)
T ss_pred CCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHH
Confidence 000000000011122222222221 12356668999999766555666676666654455666655543 333322 2
Q ss_pred CCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHHHHH
Q 038637 355 RAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAAKTL 411 (962)
Q Consensus 355 ~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~ 411 (962)
.....+++.+++.++....+.+.+.... -+..++.+..|++.++|.+-.+...
T Consensus 168 SRc~~~~f~~l~~~el~~~L~~i~~~eg----i~id~eAl~lLa~~s~GdlR~alsl 220 (563)
T PRK06647 168 SRCQHFNFRLLSLEKIYNMLKKVCLEDQ----IKYEDEALKWIAYKSTGSVRDAYTL 220 (563)
T ss_pred HhceEEEecCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence 2335688999999999888877653321 1223567788999999988544433
No 139
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.63 E-value=0.00016 Score=78.69 Aligned_cols=137 Identities=20% Similarity=0.288 Sum_probs=69.6
Q ss_pred CCCcCeEEEeec-CCCCCCcCcCCCCCCCccEEEEeCCCCCCCCCCCCCCCCcCeEeecCCCCceEeCccccCCCCCCCC
Q 038637 797 HRDVQELTIRGY-GGTKFPIWLGDSSFSKLVNLKFGYCRMCTSLPSVGQLPLLKHLKISGMDRVKSVGLEFYGSSCSVPF 875 (962)
Q Consensus 797 ~~~L~~L~l~~~-~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~~~~~~f 875 (962)
+++|++|.++++ ....+|..+ .++|++|.+++|.....+| ++|+.|++..+ ....++ .-.
T Consensus 71 P~sLtsL~Lsnc~nLtsLP~~L----P~nLe~L~Ls~Cs~L~sLP-----~sLe~L~L~~n-~~~~L~---------~LP 131 (426)
T PRK15386 71 PNELTEITIENCNNLTTLPGSI----PEGLEKLTVCHCPEISGLP-----ESVRSLEIKGS-ATDSIK---------NVP 131 (426)
T ss_pred CCCCcEEEccCCCCcccCCchh----hhhhhheEccCcccccccc-----cccceEEeCCC-CCcccc---------cCc
Confidence 345666666653 233444432 2456666666664433333 34555555432 111111 013
Q ss_pred CCcceeeccccccccccccccCCccccCcCCccceEeEccCCCccccCCCCC-CCcceEEEcccc--CccccCCCC-CCc
Q 038637 876 PSLETLSFSDMREWEEWISCGAGQEVDEVFPKLRKLSLFNCYKLQGTLPKRL-LLLEKLVIKSCH--RLLVTIQCL-PTL 951 (962)
Q Consensus 876 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~lp~~l-~~L~~L~i~~c~--~l~~~l~~l-~~L 951 (962)
++|+.|.+.++.....+.. . ....++|+.|.+++|..+. +|..+ .+|+.|.++.+. .+.-....+ +++
T Consensus 132 ssLk~L~I~~~n~~~~~~l----p--~~LPsSLk~L~Is~c~~i~--LP~~LP~SLk~L~ls~n~~~sLeI~~~sLP~nl 203 (426)
T PRK15386 132 NGLTSLSINSYNPENQARI----D--NLISPSLKTLSLTGCSNII--LPEKLPESLQSITLHIEQKTTWNISFEGFPDGL 203 (426)
T ss_pred chHhheecccccccccccc----c--cccCCcccEEEecCCCccc--CcccccccCcEEEecccccccccCccccccccc
Confidence 5677777754321111111 0 1123589999999986543 45433 488889987653 221122233 356
Q ss_pred CEEecCCCCC
Q 038637 952 TELHTKLCRR 961 (962)
Q Consensus 952 ~~L~l~~C~~ 961 (962)
.|.+.+|-+
T Consensus 204 -~L~f~n~lk 212 (426)
T PRK15386 204 -DIDLQNSVL 212 (426)
T ss_pred -Eechhhhcc
Confidence 788888754
No 140
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.61 E-value=1.5e-05 Score=90.48 Aligned_cols=100 Identities=25% Similarity=0.351 Sum_probs=64.6
Q ss_pred hCCCCcccEEEeCCCcCcccccccccCCCcCCeEeccCCCCccccccccccccCcEEeeCCCccccccchhcccCCCccE
Q 038637 611 LNHLPRLRVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLENCWELKKLCKDMGNLTKLRH 690 (962)
Q Consensus 611 l~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 690 (962)
+..+++|..|++.+| .+..+...+..+.+|++|+|++|.|+.+ ..+..|..|+.|++.+| .+..++ .+..+++|+.
T Consensus 91 l~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N-~i~~~~-~~~~l~~L~~ 166 (414)
T KOG0531|consen 91 LSKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGN-LISDIS-GLESLKSLKL 166 (414)
T ss_pred cccccceeeeecccc-chhhcccchhhhhcchheeccccccccc-cchhhccchhhheeccC-cchhcc-CCccchhhhc
Confidence 456777777777777 5666655577777888888888777766 34566677778888777 555553 3555777777
Q ss_pred EecCCCCCccccCCC-CCCCCCCCcc
Q 038637 691 LRNSDAGLLEEMPKG-FGKLTSLLTL 715 (962)
Q Consensus 691 L~l~~~~~~~~~p~~-i~~l~~L~~L 715 (962)
+++++|. +..+... +..+.++..+
T Consensus 167 l~l~~n~-i~~ie~~~~~~~~~l~~l 191 (414)
T KOG0531|consen 167 LDLSYNR-IVDIENDELSELISLEEL 191 (414)
T ss_pred ccCCcch-hhhhhhhhhhhccchHHH
Confidence 7777776 3333221 2444444444
No 141
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.61 E-value=0.00079 Score=76.15 Aligned_cols=158 Identities=18% Similarity=0.166 Sum_probs=90.7
Q ss_pred cEEEEEEcCCCchHHHHHHHHhCccchhccc--ceEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCccHHHHHHHHHhHh
Q 038637 228 FSVISINGMGGVGKTTLAQLVYNDDRVQRHF--QFKAWACVSEDFDVFRVTKSILKSIANDQSNNDDDLNLLQEKLKKQL 305 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F--~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 305 (962)
...+.|+|+.|+|||+|++++++. +.... ..+++++ ..++...+...+... ..+...+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~--l~~~~~~~~v~yi~------~~~~~~~~~~~~~~~------~~~~~~~~~---- 197 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNE--ILENNPNAKVVYVS------SEKFTNDFVNALRNN------KMEEFKEKY---- 197 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HHHhCCCCcEEEEE------HHHHHHHHHHHHHcC------CHHHHHHHH----
Confidence 456899999999999999999984 33322 2344553 334444555554321 122222222
Q ss_pred CCceEEEEEecCCCCCcc-ch-hhccCCCCC-CCCCcEEEEEecCh--h-------hHhhhCCCCcccCCCCCHHHHHHH
Q 038637 306 SGNKFLLVLDDVWNKNYN-YW-SILSCPFGA-GAPGSKIVVTTRNL--D-------VANLTRAYPKYGLKELSDDDCLRV 373 (962)
Q Consensus 306 ~~kr~LlVlDdv~~~~~~-~~-~~l~~~l~~-~~~gs~ilvTtR~~--~-------v~~~~~~~~~~~l~~L~~~~~~~L 373 (962)
++ .-+||+||+...... .+ +.+...+.. ...+..||+|+... . +...+.....+.+++.+.++-..+
T Consensus 198 ~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~i 276 (405)
T TIGR00362 198 RS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAI 276 (405)
T ss_pred Hh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHH
Confidence 22 238899999542211 11 222222211 12355688877642 1 222222334688999999999999
Q ss_pred HHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHH
Q 038637 374 VIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAA 408 (962)
Q Consensus 374 f~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai 408 (962)
+.+++-... ..--+++...|++.+.|.+-.+
T Consensus 277 l~~~~~~~~----~~l~~e~l~~ia~~~~~~~r~l 307 (405)
T TIGR00362 277 LQKKAEEEG----LELPDEVLEFIAKNIRSNVREL 307 (405)
T ss_pred HHHHHHHcC----CCCCHHHHHHHHHhcCCCHHHH
Confidence 998874321 1223577888888888876543
No 142
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=1.4e-06 Score=87.35 Aligned_cols=164 Identities=23% Similarity=0.262 Sum_probs=108.0
Q ss_pred hhhhcCcCCcCCCceEEeccCCCCCCccchhhHHhhhccCCCCCCcCeEEEeecCCCC-CCc-CcCCCCCCCccEEEEeC
Q 038637 755 ACEAQLNNKVNLRTLLLDWSARDVQNLDQCEFETRVLSMLKPHRDVQELTIRGYGGTK-FPI-WLGDSSFSKLVNLKFGY 832 (962)
Q Consensus 755 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~p~-~~~~~~l~~L~~L~L~~ 832 (962)
.+...|+.+.+|+.|++.+... ++.+-..+..-.+|+.|+|+++.+-+ ..- .+. .+++.|.+|+|++
T Consensus 201 tl~~iLs~C~kLk~lSlEg~~L----------dD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~-~scs~L~~LNlsW 269 (419)
T KOG2120|consen 201 TLHGILSQCSKLKNLSLEGLRL----------DDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLL-SSCSRLDELNLSW 269 (419)
T ss_pred HHHHHHHHHHhhhhcccccccc----------CcHHHHHHhccccceeeccccccccchhHHHHHH-HhhhhHhhcCchH
Confidence 4455677788899998887652 23344455667899999999886532 111 111 3788999999999
Q ss_pred CCCCCCCC--CCC-CCCCcCeEeecCCCCceEeC-ccccCCCCCCCCCCcceeeccccccccccccccCCccccCcCCcc
Q 038637 833 CRMCTSLP--SVG-QLPLLKHLKISGMDRVKSVG-LEFYGSSCSVPFPSLETLSFSDMREWEEWISCGAGQEVDEVFPKL 908 (962)
Q Consensus 833 ~~~~~~l~--~l~-~lp~L~~L~L~~~~~~~~~~-~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L 908 (962)
|......- ... --++|..|+|++|...-... .+.. ..-+|+|..|+|+++..++.- + ......|+.|
T Consensus 270 c~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL----~~rcp~l~~LDLSD~v~l~~~-~----~~~~~kf~~L 340 (419)
T KOG2120|consen 270 CFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTL----VRRCPNLVHLDLSDSVMLKND-C----FQEFFKFNYL 340 (419)
T ss_pred hhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHH----HHhCCceeeeccccccccCch-H----HHHHHhcchh
Confidence 98874332 111 23689999999875321110 0000 112899999999998877652 1 1234568999
Q ss_pred ceEeEccCCCccccCC------CCCCCcceEEEccccCc
Q 038637 909 RKLSLFNCYKLQGTLP------KRLLLLEKLVIKSCHRL 941 (962)
Q Consensus 909 ~~L~l~~c~~L~~~lp------~~l~~L~~L~i~~c~~l 941 (962)
+.|.++.|..+ +| ...|+|..|++.+|-.-
T Consensus 341 ~~lSlsRCY~i---~p~~~~~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 341 QHLSLSRCYDI---IPETLLELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred eeeehhhhcCC---ChHHeeeeccCcceEEEEeccccCc
Confidence 99999999643 23 35689999999998643
No 143
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.60 E-value=0.00054 Score=72.90 Aligned_cols=133 Identities=14% Similarity=0.070 Sum_probs=70.5
Q ss_pred EEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCccHHHHHHHHHhHhCCc
Q 038637 229 SVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSIANDQSNNDDDLNLLQEKLKKQLSGN 308 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k 308 (962)
..+.++|++|.||||+|+.++......+......|+.++. . +++..+.+.. .......+.+. .
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~----~l~~~~~g~~------~~~~~~~~~~a---~ 121 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----D----DLVGQYIGHT------APKTKEILKRA---M 121 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----H----HHhHhhcccc------hHHHHHHHHHc---c
Confidence 3578999999999999987766321111111223444442 1 2222222211 11222223222 2
Q ss_pred eEEEEEecCCCC---------CccchhhccCCCCCCCCCcEEEEEecChhhHhhhC--------CCCcccCCCCCHHHHH
Q 038637 309 KFLLVLDDVWNK---------NYNYWSILSCPFGAGAPGSKIVVTTRNLDVANLTR--------AYPKYGLKELSDDDCL 371 (962)
Q Consensus 309 r~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~--------~~~~~~l~~L~~~~~~ 371 (962)
.-+|+||++..- ....+..+...+.....+.+||+++.......... -...+++++++.+|-.
T Consensus 122 ~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~ 201 (284)
T TIGR02880 122 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELL 201 (284)
T ss_pred CcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHH
Confidence 358899998521 11223334444444445566777765433222211 1245889999999999
Q ss_pred HHHHHhh
Q 038637 372 RVVIQHS 378 (962)
Q Consensus 372 ~Lf~~~a 378 (962)
+++...+
T Consensus 202 ~I~~~~l 208 (284)
T TIGR02880 202 VIAGLML 208 (284)
T ss_pred HHHHHHH
Confidence 9988765
No 144
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.59 E-value=0.00026 Score=77.98 Aligned_cols=109 Identities=15% Similarity=0.144 Sum_probs=71.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSIL 280 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 280 (962)
.++++.+..++.+...|... +.|.++|++|+|||++|+.+++.......|+.+.||++++.++..+++..+-
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~r 246 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYR 246 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccC
Confidence 45788899999999998643 4678899999999999999988544445678888999999888766654221
Q ss_pred HHhccCCCCCCccHHHHHHHHHhHhC--CceEEEEEecCCCCC
Q 038637 281 KSIANDQSNNDDDLNLLQEKLKKQLS--GNKFLLVLDDVWNKN 321 (962)
Q Consensus 281 ~~l~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~ 321 (962)
.....-........+.+..... ++++++|+|++...+
T Consensus 247 ----P~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRan 285 (459)
T PRK11331 247 ----PNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRAN 285 (459)
T ss_pred ----CCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccC
Confidence 1000000001112222222222 468999999995433
No 145
>PRK06620 hypothetical protein; Validated
Probab=97.58 E-value=0.0008 Score=68.20 Aligned_cols=135 Identities=13% Similarity=0.072 Sum_probs=79.6
Q ss_pred EEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCccHHHHHHHHHhHhCCc
Q 038637 229 SVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSIANDQSNNDDDLNLLQEKLKKQLSGN 308 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k 308 (962)
+.+.|+|++|+|||+|++.+++... . .++. ..+. . + +..+ .
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~--~-----~~~~--~~~~---------------------~-~-------~~~~-~ 85 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN--A-----YIIK--DIFF---------------------N-E-------EILE-K 85 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC--C-----EEcc--hhhh---------------------c-h-------hHHh-c
Confidence 6789999999999999999877431 1 1111 0000 0 0 0011 2
Q ss_pred eEEEEEecCCCCCccchhhccCCCC-CCCCCcEEEEEecChh-------hHhhhCCCCcccCCCCCHHHHHHHHHHhhcC
Q 038637 309 KFLLVLDDVWNKNYNYWSILSCPFG-AGAPGSKIVVTTRNLD-------VANLTRAYPKYGLKELSDDDCLRVVIQHSLG 380 (962)
Q Consensus 309 r~LlVlDdv~~~~~~~~~~l~~~l~-~~~~gs~ilvTtR~~~-------v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~ 380 (962)
.-++++||+..-. + ..+...+. ....|..||+|++... ....+....++++++++.++-..++.+.+..
T Consensus 86 ~d~lliDdi~~~~--~-~~lf~l~N~~~e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~ 162 (214)
T PRK06620 86 YNAFIIEDIENWQ--E-PALLHIFNIINEKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSI 162 (214)
T ss_pred CCEEEEeccccch--H-HHHHHHHHHHHhcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHH
Confidence 3478899994211 1 11211111 0135778999987532 3333445567999999999988888776532
Q ss_pred CCCCCCCcchHHHHHHHHHhcCCChHHHH
Q 038637 381 ATGFSTNQSLKDVGEKIAKKCKGLPLAAK 409 (962)
Q Consensus 381 ~~~~~~~~~~~~~~~~I~~~c~glPLai~ 409 (962)
.+. .--+++..-|++.+.|.--.+.
T Consensus 163 -~~l---~l~~ev~~~L~~~~~~d~r~l~ 187 (214)
T PRK06620 163 -SSV---TISRQIIDFLLVNLPREYSKII 187 (214)
T ss_pred -cCC---CCCHHHHHHHHHHccCCHHHHH
Confidence 111 1235778888888887654443
No 146
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.57 E-value=3.3e-05 Score=91.39 Aligned_cols=134 Identities=21% Similarity=0.215 Sum_probs=85.0
Q ss_pred CcCCeEeccCCCCc--ccccccc-ccccCcEEeeCCCcc-ccccchhcccCCCccEEecCCCCCccccCCCCCCCCCCCc
Q 038637 639 KHLRCLNLSRTRIQ--ILPESIN-SLYNLHTILLENCWE-LKKLCKDMGNLTKLRHLRNSDAGLLEEMPKGFGKLTSLLT 714 (962)
Q Consensus 639 ~~Lr~L~Ls~~~i~--~lp~~i~-~L~~L~~L~L~~~~~-l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~ 714 (962)
.+|++|+++|...- ..|..++ .||.|+.|.+.+-.. ..++-.-..++++|+.||+++++ +..+ .++++|++||+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCc-HHHhccccHHH
Confidence 46777777764322 4455555 478888888876422 12333445678888888888887 4444 67888999998
Q ss_pred cCCeEeCCCCCCCcccccCcccCCCeEEEeccCCCCCh--hhhhhhcCcCCcCCCceEEeccC
Q 038637 715 LGRFVVGKDSGSGLRELKSLTHLQGTLRISKLENVEDV--GDACEAQLNNKVNLRTLLLDWSA 775 (962)
Q Consensus 715 L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~--~~~~~~~l~~~~~L~~L~l~~~~ 775 (962)
|......-.+...+.+|-+|++|+ .|+|+.-...... .....+.-..+++|+.|+.+++.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~-vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLR-VLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCC-eeeccccccccchHHHHHHHHhcccCccccEEecCCcc
Confidence 877666655566677777777777 7777654332222 12222333446777777766554
No 147
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.56 E-value=0.0012 Score=77.32 Aligned_cols=196 Identities=16% Similarity=0.157 Sum_probs=105.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSIL 280 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 280 (962)
+++||.+..++.|.+++.... -...+.++|+.|+||||+|+.+++...-....+. -.+.... .-+.|.
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~---~~c~~c~----~c~~i~ 83 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR-----VAHAFLFTGARGVGKTSTARILAKALNCEQGLTA---EPCNVCP----PCVEIT 83 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCC---CCCCccH----HHHHHh
Confidence 568999999999999985432 2355689999999999999988763210000000 0000000 000000
Q ss_pred HH-------hccCCCCCCccHHHHHHHHHhH-hCCceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEE-EecChhhH
Q 038637 281 KS-------IANDQSNNDDDLNLLQEKLKKQ-LSGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVV-TTRNLDVA 351 (962)
Q Consensus 281 ~~-------l~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-TtR~~~v~ 351 (962)
.. +.+.......+..++.+.+... ..+++-++|+|++...+....+.+...+......+.+|+ ||....+.
T Consensus 84 ~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~ 163 (576)
T PRK14965 84 EGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVP 163 (576)
T ss_pred cCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhh
Confidence 00 0000000111222333222211 124555889999966554555556555544434555554 54444443
Q ss_pred hh-hCCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCCh-HHHHHHH
Q 038637 352 NL-TRAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLP-LAAKTLG 412 (962)
Q Consensus 352 ~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glP-Lai~~~~ 412 (962)
.. ......+++.+++.++....+...+-. .+ -....+....|++.++|.. .|+..+-
T Consensus 164 ~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~-eg---i~i~~~al~~la~~a~G~lr~al~~Ld 222 (576)
T PRK14965 164 ITILSRCQRFDFRRIPLQKIVDRLRYIADQ-EG---ISISDAALALVARKGDGSMRDSLSTLD 222 (576)
T ss_pred HHHHHhhhhhhcCCCCHHHHHHHHHHHHHH-hC---CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 32 223456889999999988877665422 11 1123566788999999966 4554443
No 148
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.55 E-value=1.5e-05 Score=90.36 Aligned_cols=99 Identities=28% Similarity=0.381 Sum_probs=77.4
Q ss_pred CCCcccEEEeCCCcCcccccccccCCCcCCeEeccCCCCccccccccccccCcEEeeCCCccccccchhcccCCCccEEe
Q 038637 613 HLPRLRVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLENCWELKKLCKDMGNLTKLRHLR 692 (962)
Q Consensus 613 ~l~~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 692 (962)
.+..+..+++..| .+...-..++.+.+|.+|++.+|.|..+...+..+.+|++|++++| .+..+. .+..++.|+.|+
T Consensus 70 ~l~~l~~l~l~~n-~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~-~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 70 SLTSLKELNLRQN-LIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFN-KITKLE-GLSTLTLLKELN 146 (414)
T ss_pred HhHhHHhhccchh-hhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccc-cccccc-chhhccchhhhe
Confidence 4566677777777 5666556688999999999999999988777899999999999999 777774 478888899999
Q ss_pred cCCCCCccccCCCCCCCCCCCccC
Q 038637 693 NSDAGLLEEMPKGFGKLTSLLTLG 716 (962)
Q Consensus 693 l~~~~~~~~~p~~i~~l~~L~~L~ 716 (962)
+.+|. +..++ ++..+++|+.+.
T Consensus 147 l~~N~-i~~~~-~~~~l~~L~~l~ 168 (414)
T KOG0531|consen 147 LSGNL-ISDIS-GLESLKSLKLLD 168 (414)
T ss_pred eccCc-chhcc-CCccchhhhccc
Confidence 99997 44433 445566666653
No 149
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.52 E-value=0.0013 Score=74.67 Aligned_cols=159 Identities=16% Similarity=0.113 Sum_probs=92.2
Q ss_pred cEEEEEEcCCCchHHHHHHHHhCccchhccc-c-eEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCccHHHHHHHHHhHh
Q 038637 228 FSVISINGMGGVGKTTLAQLVYNDDRVQRHF-Q-FKAWACVSEDFDVFRVTKSILKSIANDQSNNDDDLNLLQEKLKKQL 305 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F-~-~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 305 (962)
..-+.|+|++|+|||+||+++++. ..... . .++|++. .++...+...+... ..+. +++..
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~--l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~------~~~~----f~~~~ 191 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLVDSMKEG------KLNE----FREKY 191 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHhcc------cHHH----HHHHH
Confidence 445899999999999999999984 33322 2 3456643 44555565555321 1222 22223
Q ss_pred CCceEEEEEecCCCCC-ccch-hhccCCCCC-CCCCcEEEEEecC-hh--------hHhhhCCCCcccCCCCCHHHHHHH
Q 038637 306 SGNKFLLVLDDVWNKN-YNYW-SILSCPFGA-GAPGSKIVVTTRN-LD--------VANLTRAYPKYGLKELSDDDCLRV 373 (962)
Q Consensus 306 ~~kr~LlVlDdv~~~~-~~~~-~~l~~~l~~-~~~gs~ilvTtR~-~~--------v~~~~~~~~~~~l~~L~~~~~~~L 373 (962)
..+.-+|++||+..-. ...+ +.+...+.. ...|..||+||.. .. +...+.....+++++.+.++-..+
T Consensus 192 ~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~I 271 (440)
T PRK14088 192 RKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKI 271 (440)
T ss_pred HhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHH
Confidence 3345589999995321 1111 122222211 1234578888753 21 222233445678999999999999
Q ss_pred HHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHH
Q 038637 374 VIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAA 408 (962)
Q Consensus 374 f~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai 408 (962)
+.+.+-.. + -.--+++...|++.+.|.--.+
T Consensus 272 L~~~~~~~-~---~~l~~ev~~~Ia~~~~~~~R~L 302 (440)
T PRK14088 272 ARKMLEIE-H---GELPEEVLNFVAENVDDNLRRL 302 (440)
T ss_pred HHHHHHhc-C---CCCCHHHHHHHHhccccCHHHH
Confidence 98886422 1 1123577888888888764433
No 150
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.52 E-value=0.00048 Score=84.72 Aligned_cols=155 Identities=19% Similarity=0.179 Sum_probs=83.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccc---hhccc-ceEEEEEeCCCCCHHHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDR---VQRHF-QFKAWACVSEDFDVFRVT 276 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~---~~~~F-~~~~wv~v~~~~~~~~~~ 276 (962)
.+++||+++++++++.|.... ..-+.++|++|+|||++|+.++.... +.... ...+|. + +...+
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~------~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~-l----~~~~l- 246 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT------KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVIT-L----DIGLL- 246 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc------cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEE-e----eHHHH-
Confidence 458999999999999996543 23456999999999999999887421 11111 234442 1 22111
Q ss_pred HHHHHHhccCCCCCCccHHHHHHHH-HhHhCCceEEEEEecCCCC-------CccchhhccCCCCCCCCCcEEEEEecCh
Q 038637 277 KSILKSIANDQSNNDDDLNLLQEKL-KKQLSGNKFLLVLDDVWNK-------NYNYWSILSCPFGAGAPGSKIVVTTRNL 348 (962)
Q Consensus 277 ~~il~~l~~~~~~~~~~~~~~~~~l-~~~l~~kr~LlVlDdv~~~-------~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 348 (962)
+.+.. ...+.++....+ .+.-+.++.+|++|++..- ...+...+..+.... ..-++|.+|...
T Consensus 247 ------~ag~~--~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r-g~l~~IgaTt~~ 317 (821)
T CHL00095 247 ------LAGTK--YRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR-GELQCIGATTLD 317 (821)
T ss_pred ------hccCC--CccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC-CCcEEEEeCCHH
Confidence 11111 122233322222 2222356899999999421 000111222221111 123555555544
Q ss_pred hhHhh-------hCCCCcccCCCCCHHHHHHHHHH
Q 038637 349 DVANL-------TRAYPKYGLKELSDDDCLRVVIQ 376 (962)
Q Consensus 349 ~v~~~-------~~~~~~~~l~~L~~~~~~~Lf~~ 376 (962)
+.... ......+.++..+.++...++..
T Consensus 318 ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~ 352 (821)
T CHL00095 318 EYRKHIEKDPALERRFQPVYVGEPSVEETIEILFG 352 (821)
T ss_pred HHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHH
Confidence 43221 12334678888899998888764
No 151
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.51 E-value=0.0023 Score=74.69 Aligned_cols=193 Identities=15% Similarity=0.146 Sum_probs=104.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSIL 280 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 280 (962)
++++|.+..++.+.+++.... -.+.+.++|+.|+||||+|+.+.....-...-+.. .++.. ..-+.|.
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~---pC~~C----~~C~~i~ 83 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK-----ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGE---PCNEC----EICKAIT 83 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC---CCCcc----HHHHHHh
Confidence 569999999999999996543 24567789999999999998886531100000000 00000 0111111
Q ss_pred HHhc-------cCCCCCCccHHHHHHHHHhH-hCCceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEE-EecChhhH
Q 038637 281 KSIA-------NDQSNNDDDLNLLQEKLKKQ-LSGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVV-TTRNLDVA 351 (962)
Q Consensus 281 ~~l~-------~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-TtR~~~v~ 351 (962)
.... ........+..++.+.+... ..++.-++|+|++..-....+..+...+........+|+ ||....+.
T Consensus 84 ~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~ 163 (559)
T PRK05563 84 NGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIP 163 (559)
T ss_pred cCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCc
Confidence 0000 00000111122222222211 235666889999966554556666555544334444444 44443332
Q ss_pred hh-hCCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHHH
Q 038637 352 NL-TRAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAAK 409 (962)
Q Consensus 352 ~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~ 409 (962)
.. ......+++.+++.++....+...+-.. +. ....+.+..|++.++|.+..+.
T Consensus 164 ~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~e-gi---~i~~~al~~ia~~s~G~~R~al 218 (559)
T PRK05563 164 ATILSRCQRFDFKRISVEDIVERLKYILDKE-GI---EYEDEALRLIARAAEGGMRDAL 218 (559)
T ss_pred HHHHhHheEEecCCCCHHHHHHHHHHHHHHc-CC---CCCHHHHHHHHHHcCCCHHHHH
Confidence 22 2223568899999999888887765321 11 1224667888999998876443
No 152
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.51 E-value=0.0011 Score=76.09 Aligned_cols=159 Identities=16% Similarity=0.157 Sum_probs=92.8
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhcccc--eEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCccHHHHHHHHHhH
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQ--FKAWACVSEDFDVFRVTKSILKSIANDQSNNDDDLNLLQEKLKKQ 304 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~--~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~ 304 (962)
...-+.|+|+.|+|||+|++++++. +...+. .+++++. .++...+...+... ..+.. .+.
T Consensus 147 ~~~~l~l~G~~G~GKThL~~ai~~~--~~~~~~~~~v~yi~~------~~~~~~~~~~~~~~------~~~~~----~~~ 208 (450)
T PRK00149 147 AYNPLFIYGGVGLGKTHLLHAIGNY--ILEKNPNAKVVYVTS------EKFTNDFVNALRNN------TMEEF----KEK 208 (450)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEEEH------HHHHHHHHHHHHcC------cHHHH----HHH
Confidence 3456899999999999999999984 433332 3445533 33344444444221 12222 233
Q ss_pred hCCceEEEEEecCCCCCcc--chhhccCCCCC-CCCCcEEEEEecCh--h-------hHhhhCCCCcccCCCCCHHHHHH
Q 038637 305 LSGNKFLLVLDDVWNKNYN--YWSILSCPFGA-GAPGSKIVVTTRNL--D-------VANLTRAYPKYGLKELSDDDCLR 372 (962)
Q Consensus 305 l~~kr~LlVlDdv~~~~~~--~~~~l~~~l~~-~~~gs~ilvTtR~~--~-------v~~~~~~~~~~~l~~L~~~~~~~ 372 (962)
++ +.-+||+||+...... ..+.+...+.. ...|..||+||... . +...+.....+++++.+.++-..
T Consensus 209 ~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~ 287 (450)
T PRK00149 209 YR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIA 287 (450)
T ss_pred Hh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHH
Confidence 33 2348999999542111 11222221111 11345688887652 1 22333344578999999999999
Q ss_pred HHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHH
Q 038637 373 VVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAA 408 (962)
Q Consensus 373 Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai 408 (962)
++.+++-.. + ..--+++...|++.+.|..-.+
T Consensus 288 il~~~~~~~-~---~~l~~e~l~~ia~~~~~~~R~l 319 (450)
T PRK00149 288 ILKKKAEEE-G---IDLPDEVLEFIAKNITSNVREL 319 (450)
T ss_pred HHHHHHHHc-C---CCCCHHHHHHHHcCcCCCHHHH
Confidence 999987432 1 1233577888999999876543
No 153
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.50 E-value=0.0017 Score=74.68 Aligned_cols=157 Identities=14% Similarity=0.132 Sum_probs=91.7
Q ss_pred EEEEEEcCCCchHHHHHHHHhCccchhccc--ceEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCccHHHHHHHHHhHhC
Q 038637 229 SVISINGMGGVGKTTLAQLVYNDDRVQRHF--QFKAWACVSEDFDVFRVTKSILKSIANDQSNNDDDLNLLQEKLKKQLS 306 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F--~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 306 (962)
..+.|+|..|+|||.|++++++. ....+ -.+++++ ..++..++...+... ..+. +++.+.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~--a~~~~~g~~V~Yit------aeef~~el~~al~~~------~~~~----f~~~y~ 376 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHY--ARRLYPGTRVRYVS------SEEFTNEFINSIRDG------KGDS----FRRRYR 376 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEee------HHHHHHHHHHHHHhc------cHHH----HHHHhh
Confidence 45899999999999999999984 33222 2344553 344444444443221 1122 222233
Q ss_pred CceEEEEEecCCCCCc-cchhh-ccCCCCC-CCCCcEEEEEecCh---------hhHhhhCCCCcccCCCCCHHHHHHHH
Q 038637 307 GNKFLLVLDDVWNKNY-NYWSI-LSCPFGA-GAPGSKIVVTTRNL---------DVANLTRAYPKYGLKELSDDDCLRVV 374 (962)
Q Consensus 307 ~kr~LlVlDdv~~~~~-~~~~~-l~~~l~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf 374 (962)
+ -=+|||||+..... ..|.. +...+.. ...|..|||||... .+...+...-.+++...+.+.-..++
T Consensus 377 ~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL 455 (617)
T PRK14086 377 E-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAIL 455 (617)
T ss_pred c-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHH
Confidence 2 24788999954321 22222 2222211 12456788888762 23334445567899999999999999
Q ss_pred HHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHH
Q 038637 375 IQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAA 408 (962)
Q Consensus 375 ~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai 408 (962)
.+++... +. .--++++.-|++.+.+..-.+
T Consensus 456 ~kka~~r-~l---~l~~eVi~yLa~r~~rnvR~L 485 (617)
T PRK14086 456 RKKAVQE-QL---NAPPEVLEFIASRISRNIREL 485 (617)
T ss_pred HHHHHhc-CC---CCCHHHHHHHHHhccCCHHHH
Confidence 9887432 21 222577778888877664433
No 154
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.47 E-value=0.00094 Score=75.43 Aligned_cols=154 Identities=13% Similarity=0.081 Sum_probs=86.4
Q ss_pred cEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCccHHHHHHHHHhHhCC
Q 038637 228 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSIANDQSNNDDDLNLLQEKLKKQLSG 307 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 307 (962)
..-+.|+|+.|+|||+|++++++.. ......+++++ ...+...+...+... .. +.++..++
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l--~~~~~~v~yi~------~~~f~~~~~~~l~~~------~~----~~f~~~~~- 201 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHAL--RESGGKILYVR------SELFTEHLVSAIRSG------EM----QRFRQFYR- 201 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHH--HHcCCCEEEee------HHHHHHHHHHHHhcc------hH----HHHHHHcc-
Confidence 4568899999999999999999843 22223344553 334444444444321 11 22333333
Q ss_pred ceEEEEEecCCCCCccc--hhhccCCCCC-CCCCcEEEEEecCh---------hhHhhhCCCCcccCCCCCHHHHHHHHH
Q 038637 308 NKFLLVLDDVWNKNYNY--WSILSCPFGA-GAPGSKIVVTTRNL---------DVANLTRAYPKYGLKELSDDDCLRVVI 375 (962)
Q Consensus 308 kr~LlVlDdv~~~~~~~--~~~l~~~l~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf~ 375 (962)
..-++++||+....... .+.+...+.. ...|..||+||... .+...+.....+++.+++.++...++.
T Consensus 202 ~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~ 281 (445)
T PRK12422 202 NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLE 281 (445)
T ss_pred cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHH
Confidence 33488889985432111 1222222110 11355788888542 222233344678899999999999998
Q ss_pred HhhcCCCCCCCCcchHHHHHHHHHhcCCC
Q 038637 376 QHSLGATGFSTNQSLKDVGEKIAKKCKGL 404 (962)
Q Consensus 376 ~~a~~~~~~~~~~~~~~~~~~I~~~c~gl 404 (962)
+++-... ..--+++..-|+..+.|.
T Consensus 282 ~k~~~~~----~~l~~evl~~la~~~~~d 306 (445)
T PRK12422 282 RKAEALS----IRIEETALDFLIEALSSN 306 (445)
T ss_pred HHHHHcC----CCCCHHHHHHHHHhcCCC
Confidence 8774321 112245666677766644
No 155
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.46 E-value=0.0026 Score=68.90 Aligned_cols=97 Identities=13% Similarity=0.107 Sum_probs=63.9
Q ss_pred CceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEEEecChh-hHhh-hCCCCcccCCCCCHHHHHHHHHHhhcCCCCC
Q 038637 307 GNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVVTTRNLD-VANL-TRAYPKYGLKELSDDDCLRVVIQHSLGATGF 384 (962)
Q Consensus 307 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 384 (962)
+++-++|+|++...+......+...+.....++.+|+||.+.+ +... .+-...+.+.+++.+++.+.+.... +.
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~-~~--- 180 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL-PE--- 180 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc-cc---
Confidence 3444557799977666666777666665546677777777643 3222 2234568999999999998887652 11
Q ss_pred CCCcchHHHHHHHHHhcCCChHHHHHH
Q 038637 385 STNQSLKDVGEKIAKKCKGLPLAAKTL 411 (962)
Q Consensus 385 ~~~~~~~~~~~~I~~~c~glPLai~~~ 411 (962)
...+.+..++..++|.|+.+..+
T Consensus 181 ----~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 181 ----SDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred ----CChHHHHHHHHHcCCCHHHHHHH
Confidence 11344567889999999866544
No 156
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.44 E-value=0.0027 Score=68.29 Aligned_cols=196 Identities=14% Similarity=0.092 Sum_probs=108.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccch-------------hcccceEEEEEeC
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRV-------------QRHFQFKAWACVS 267 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-------------~~~F~~~~wv~v~ 267 (962)
++++|.+..++.+...+.... -.....++|+.|+||+++|..+.+..-- ....+...|+.-.
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-----l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~ 78 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-----IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPT 78 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecc
Confidence 468999999999999996543 2478899999999999999777653100 1122333444321
Q ss_pred CCCCHHHHHHHHHHHhccCC-CCCCccHHHHHHHHHhHh-----CCceEEEEEecCCCCCccchhhccCCCCCCCCCcEE
Q 038637 268 EDFDVFRVTKSILKSIANDQ-SNNDDDLNLLQEKLKKQL-----SGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKI 341 (962)
Q Consensus 268 ~~~~~~~~~~~il~~l~~~~-~~~~~~~~~~~~~l~~~l-----~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~i 341 (962)
...+-..+-.+-++..+... .......+++ +.+.+.+ .+++-++|+|++...+......+...+.... .+.+
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~~~~~I~id~i-r~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~f 156 (314)
T PRK07399 79 YQHQGKLITASEAEEAGLKRKAPPQIRLEQI-REIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTL 156 (314)
T ss_pred ccccccccchhhhhhccccccccccCcHHHH-HHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeE
Confidence 00000000011111111000 0011112222 2233333 3566789999996655555555655554333 3345
Q ss_pred EEEecC-hhhHh-hhCCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHHHH
Q 038637 342 VVTTRN-LDVAN-LTRAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAAKT 410 (962)
Q Consensus 342 lvTtR~-~~v~~-~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~ 410 (962)
|++|.+ ..+.. ..+-...+++.++++++..+.+.+..... ........++..++|.|..+..
T Consensus 157 ILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~-------~~~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 157 ILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEE-------ILNINFPELLALAQGSPGAAIA 220 (314)
T ss_pred EEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccc-------cchhHHHHHHHHcCCCHHHHHH
Confidence 555444 33332 22234679999999999999998764211 1111235789999999976544
No 157
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.43 E-value=0.00091 Score=82.53 Aligned_cols=157 Identities=14% Similarity=0.105 Sum_probs=82.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhc----ccceEEEEEeCCCCCHHHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQR----HFQFKAWACVSEDFDVFRVT 276 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~~~ 276 (962)
.++|||+.++++++..|.... ...+.++|++|+|||++|+.+.....-.. -....+|.. +...+
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~------~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l-----~~~~l- 240 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT------KNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL-----DMGAL- 240 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe-----eHHHH-
Confidence 459999999999999995543 24456899999999999998877321110 012233321 11111
Q ss_pred HHHHHHhccCCCCCCccHHHHHHHHHhHh-C-CceEEEEEecCCCCC-----c--cchhhccCCCCCCCCCcEEEEEecC
Q 038637 277 KSILKSIANDQSNNDDDLNLLQEKLKKQL-S-GNKFLLVLDDVWNKN-----Y--NYWSILSCPFGAGAPGSKIVVTTRN 347 (962)
Q Consensus 277 ~~il~~l~~~~~~~~~~~~~~~~~l~~~l-~-~kr~LlVlDdv~~~~-----~--~~~~~l~~~l~~~~~gs~ilvTtR~ 347 (962)
+ .+.. ...+.+.....+.+.+ + +++.+|++|++..-. . .+-..+..+.... ..-++|-+|-.
T Consensus 241 ---~---a~~~--~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~-g~i~~IgaTt~ 311 (852)
T TIGR03346 241 ---I---AGAK--YRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALAR-GELHCIGATTL 311 (852)
T ss_pred ---h---hcch--hhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhc-CceEEEEeCcH
Confidence 1 0100 1112222222222222 2 468999999995311 0 0111222222221 12344544444
Q ss_pred hhhHhh-------hCCCCcccCCCCCHHHHHHHHHHhh
Q 038637 348 LDVANL-------TRAYPKYGLKELSDDDCLRVVIQHS 378 (962)
Q Consensus 348 ~~v~~~-------~~~~~~~~l~~L~~~~~~~Lf~~~a 378 (962)
.+.... ..-...+.++..+.++...++....
T Consensus 312 ~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 312 DEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 333211 1223467889899999999887653
No 158
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.42 E-value=0.0043 Score=62.44 Aligned_cols=108 Identities=21% Similarity=0.252 Sum_probs=66.0
Q ss_pred ccCCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHH
Q 038637 198 VNEAEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTK 277 (962)
Q Consensus 198 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 277 (962)
+.-+.++|.|.+++.|++-...-.. .....-+.++|..|.|||++++++.+...-.+ .+ -|.|.+.
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt~~Fl~--G~pannvLL~G~rGtGKSSlVkall~~y~~~G---LR-lIev~k~-------- 89 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENTEQFLQ--GLPANNVLLWGARGTGKSSLVKALLNEYADQG---LR-LIEVSKE-------- 89 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHc--CCCCcceEEecCCCCCHHHHHHHHHHHHhhcC---ce-EEEECHH--------
Confidence 3446799999999998775432221 12445678899999999999999987432222 11 1222221
Q ss_pred HHHHHhccCCCCCCccHHHHHHHHHhHhCCceEEEEEecCCCC-CccchhhccCCCC
Q 038637 278 SILKSIANDQSNNDDDLNLLQEKLKKQLSGNKFLLVLDDVWNK-NYNYWSILSCPFG 333 (962)
Q Consensus 278 ~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~ 333 (962)
...++..+.+.++. ...||+|++||+.-+ .......++..+.
T Consensus 90 ------------~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~Le 132 (249)
T PF05673_consen 90 ------------DLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLE 132 (249)
T ss_pred ------------HhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhc
Confidence 22334444555542 457999999999432 2344555655554
No 159
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.42 E-value=0.00088 Score=73.09 Aligned_cols=136 Identities=19% Similarity=0.163 Sum_probs=82.1
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCccHHHHHHHHHhHhC
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSIANDQSNNDDDLNLLQEKLKKQLS 306 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 306 (962)
....+.|+|..|.|||.|++++.+ ....+.+....+.+ +.......++..+... -.+..++..
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign--~~~~~~~~a~v~y~----~se~f~~~~v~a~~~~----------~~~~Fk~~y- 174 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGN--EALANGPNARVVYL----TSEDFTNDFVKALRDN----------EMEKFKEKY- 174 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHH--HHHhhCCCceEEec----cHHHHHHHHHHHHHhh----------hHHHHHHhh-
Confidence 567899999999999999999999 44444443333332 2333333333333221 123344443
Q ss_pred CceEEEEEecCCCCCc-cchh-hccCCCCC-CCCCcEEEEEecC---------hhhHhhhCCCCcccCCCCCHHHHHHHH
Q 038637 307 GNKFLLVLDDVWNKNY-NYWS-ILSCPFGA-GAPGSKIVVTTRN---------LDVANLTRAYPKYGLKELSDDDCLRVV 374 (962)
Q Consensus 307 ~kr~LlVlDdv~~~~~-~~~~-~l~~~l~~-~~~gs~ilvTtR~---------~~v~~~~~~~~~~~l~~L~~~~~~~Lf 374 (962)
.-=++++||++--.. +.|+ .+...|.. ...|-.||+|++. ..+...+...-.+++.+++.+....++
T Consensus 175 -~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL 253 (408)
T COG0593 175 -SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAIL 253 (408)
T ss_pred -ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHH
Confidence 233888999954211 1222 22222221 1234489999875 234555566678999999999999999
Q ss_pred HHhhcC
Q 038637 375 IQHSLG 380 (962)
Q Consensus 375 ~~~a~~ 380 (962)
.+++..
T Consensus 254 ~kka~~ 259 (408)
T COG0593 254 RKKAED 259 (408)
T ss_pred HHHHHh
Confidence 987643
No 160
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.36 E-value=0.00069 Score=81.16 Aligned_cols=156 Identities=22% Similarity=0.262 Sum_probs=85.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcc-----cceEEEEEeCCCCCHHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRH-----FQFKAWACVSEDFDVFRV 275 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-----F~~~~wv~v~~~~~~~~~ 275 (962)
..++||+.+++++++.|.... ..-+.++|++|+|||++|+.+++.. +... .++.+|.. +...+
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~------~~n~LLvGppGvGKT~lae~la~~i-~~~~vP~~l~~~~~~~l-----~~~~l 253 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR------KNNPLLVGESGVGKTAIAEGLAWRI-VQGDVPEVMADCTIYSL-----DIGSL 253 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHHH-HhcCCCchhcCCeEEec-----cHHHH
Confidence 358999999999999996643 2334689999999999999998632 1111 23444421 11111
Q ss_pred HHHHHHHhccCCCCCCccHHHHHHHHHhHh-CCceEEEEEecCCCC--------CccchhhccCCCCCCCCCcEEEEEec
Q 038637 276 TKSILKSIANDQSNNDDDLNLLQEKLKKQL-SGNKFLLVLDDVWNK--------NYNYWSILSCPFGAGAPGSKIVVTTR 346 (962)
Q Consensus 276 ~~~il~~l~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~--------~~~~~~~l~~~l~~~~~gs~ilvTtR 346 (962)
+ .+.. ...+.+.....+.+.+ +.++.+|++|++..- ...+...+..++... ..-+||-+|.
T Consensus 254 ----l---aG~~--~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt 323 (758)
T PRK11034 254 ----L---AGTK--YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTT 323 (758)
T ss_pred ----h---cccc--hhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCC
Confidence 1 1111 1122222222222222 346779999999421 111222222222222 2234555554
Q ss_pred ChhhHhh-------hCCCCcccCCCCCHHHHHHHHHHhh
Q 038637 347 NLDVANL-------TRAYPKYGLKELSDDDCLRVVIQHS 378 (962)
Q Consensus 347 ~~~v~~~-------~~~~~~~~l~~L~~~~~~~Lf~~~a 378 (962)
..+.... ..-...+.+++++.++..+++....
T Consensus 324 ~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 324 YQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred hHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 4333211 1223568999999999999998654
No 161
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.34 E-value=1.5e-05 Score=70.85 Aligned_cols=96 Identities=19% Similarity=0.284 Sum_probs=56.7
Q ss_pred ccEEEeCCCcCcccccc---cccCCCcCCeEeccCCCCcccccccc-ccccCcEEeeCCCccccccchhcccCCCccEEe
Q 038637 617 LRVFSLCGYCNIFNLPN---EIGNLKHLRCLNLSRTRIQILPESIN-SLYNLHTILLENCWELKKLCKDMGNLTKLRHLR 692 (962)
Q Consensus 617 Lr~L~L~~~~~~~~lp~---~i~~L~~Lr~L~Ls~~~i~~lp~~i~-~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 692 (962)
+..|+|+.| .+..+++ .+....+|...+|++|.++..|+.+. +.+.+.+|++.+| .+..+|.++..++.|+.|+
T Consensus 29 ~h~ldLssc-~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSC-QLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccc-hhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcc
Confidence 444566666 4444432 34455566666667776666666555 3346666666666 6666666666667777777
Q ss_pred cCCCCCccccCCCCCCCCCCCcc
Q 038637 693 NSDAGLLEEMPKGFGKLTSLLTL 715 (962)
Q Consensus 693 l~~~~~~~~~p~~i~~l~~L~~L 715 (962)
++.|. +...|.-|..|.+|-.|
T Consensus 107 l~~N~-l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 107 LRFNP-LNAEPRVIAPLIKLDML 128 (177)
T ss_pred cccCc-cccchHHHHHHHhHHHh
Confidence 66666 45555555555444444
No 162
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.33 E-value=0.0019 Score=79.46 Aligned_cols=45 Identities=24% Similarity=0.327 Sum_probs=37.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
.++|||+.+++++++.|.... ..-+.++|++|+|||++|+.+...
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~------~~n~lL~G~pGvGKT~l~~~la~~ 222 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT------KNNPVLIGEPGVGKTAIVEGLAQR 222 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC------cCceEEECCCCCCHHHHHHHHHHH
Confidence 469999999999999996543 245569999999999999988873
No 163
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.32 E-value=7.7e-05 Score=75.12 Aligned_cols=201 Identities=19% Similarity=0.197 Sum_probs=104.4
Q ss_pred CCCCcccEEEeCCCcCccccc---ccccCCCcCCeEeccCCCCccccccc-cccccCcEEeeCCCcc-ccccchhcccCC
Q 038637 612 NHLPRLRVFSLCGYCNIFNLP---NEIGNLKHLRCLNLSRTRIQILPESI-NSLYNLHTILLENCWE-LKKLCKDMGNLT 686 (962)
Q Consensus 612 ~~l~~Lr~L~L~~~~~~~~lp---~~i~~L~~Lr~L~Ls~~~i~~lp~~i-~~L~~L~~L~L~~~~~-l~~lp~~i~~L~ 686 (962)
..+..++.|||.+| .+.... ..+.+|++|++|+|+.|.+..-.... -.+.+|++|-|.+++. .......+..+|
T Consensus 68 ~~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 68 SSVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP 146 (418)
T ss_pred HHhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence 45667777888777 454432 23457778888888877655222222 2456777777777632 123334456667
Q ss_pred CccEEecCCCCCccccCC---CCCC-CCCCCccCCeEeCCCCCCCcccccCcccCCCeEEEeccCCCCChhhhhhhcCcC
Q 038637 687 KLRHLRNSDAGLLEEMPK---GFGK-LTSLLTLGRFVVGKDSGSGLRELKSLTHLQGTLRISKLENVEDVGDACEAQLNN 762 (962)
Q Consensus 687 ~L~~L~l~~~~~~~~~p~---~i~~-l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~ 762 (962)
+++.|+++.|. +..+-. .+.. -+.+.+| ..+. +. ............-
T Consensus 147 ~vtelHmS~N~-~rq~n~Dd~c~e~~s~~v~tl-------------------h~~~-------c~--~~~w~~~~~l~r~ 197 (418)
T KOG2982|consen 147 KVTELHMSDNS-LRQLNLDDNCIEDWSTEVLTL-------------------HQLP-------CL--EQLWLNKNKLSRI 197 (418)
T ss_pred hhhhhhhccch-hhhhccccccccccchhhhhh-------------------hcCC-------cH--HHHHHHHHhHHhh
Confidence 77777766664 111100 0000 0011111 1111 00 0000001111112
Q ss_pred CcCCCceEEeccCCCCCCccchhhHHhhhccCCCCCCcCeEEEeecCCCCCCcCcC---CCCCCCccEEEEeCCCCCCCC
Q 038637 763 KVNLRTLLLDWSARDVQNLDQCEFETRVLSMLKPHRDVQELTIRGYGGTKFPIWLG---DSSFSKLVNLKFGYCRMCTSL 839 (962)
Q Consensus 763 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~---~~~l~~L~~L~L~~~~~~~~l 839 (962)
.+++.++.+.-+..+ +...-....+++.+.-|++..+++. +|-. -..++.|+.|.++++++.+.+
T Consensus 198 Fpnv~sv~v~e~PlK---------~~s~ek~se~~p~~~~LnL~~~~id---swasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLK---------TESSEKGSEPFPSLSCLNLGANNID---SWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred cccchheeeecCccc---------chhhcccCCCCCcchhhhhcccccc---cHHHHHHHcCCchhheeeccCCcccccc
Confidence 356666665554421 1122234556677777888776554 3421 126889999999999988765
Q ss_pred C-------CCCCCCCcCeEeec
Q 038637 840 P-------SVGQLPLLKHLKIS 854 (962)
Q Consensus 840 ~-------~l~~lp~L~~L~L~ 854 (962)
. .++.|++++.|+=+
T Consensus 266 ~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 266 RGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred cCCcceEEEEeeccceEEecCc
Confidence 4 45778888887543
No 164
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.25 E-value=0.00097 Score=74.56 Aligned_cols=157 Identities=18% Similarity=0.181 Sum_probs=85.9
Q ss_pred CccccchhhHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGL-------RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVF 273 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 273 (962)
.++.|.+..+++|.+.+.-.-. -+-...+-|.++|++|.|||++|+++++. ....| +.+..+.
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e--l~~~f---i~V~~se----- 252 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE--TSATF---LRVVGSE----- 252 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh--hCCCE---EEEecch-----
Confidence 4578999999999887742110 01123456789999999999999999983 33333 1121111
Q ss_pred HHHHHHHHHhccCCCCCCccHHHHHHHHHhHhCCceEEEEEecCCCCC-----------cc---chhhccCCCC--CCCC
Q 038637 274 RVTKSILKSIANDQSNNDDDLNLLQEKLKKQLSGNKFLLVLDDVWNKN-----------YN---YWSILSCPFG--AGAP 337 (962)
Q Consensus 274 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----------~~---~~~~l~~~l~--~~~~ 337 (962)
+ .....+ .....+...+.....+.+.+|+||++..-. .. ....+...+. ....
T Consensus 253 -L----~~k~~G------e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~ 321 (438)
T PTZ00361 253 -L----IQKYLG------DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRG 321 (438)
T ss_pred -h----hhhhcc------hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccC
Confidence 1 111110 111112222333334567889999873210 00 0011111111 1123
Q ss_pred CcEEEEEecChhhHhh-h----CCCCcccCCCCCHHHHHHHHHHhh
Q 038637 338 GSKIVVTTRNLDVANL-T----RAYPKYGLKELSDDDCLRVVIQHS 378 (962)
Q Consensus 338 gs~ilvTtR~~~v~~~-~----~~~~~~~l~~L~~~~~~~Lf~~~a 378 (962)
+.+||+||...+.... + .-...+.+...+.++..++|..+.
T Consensus 322 ~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~ 367 (438)
T PTZ00361 322 DVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHT 367 (438)
T ss_pred CeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHH
Confidence 5678888876443322 1 123468899999999999998765
No 165
>PRK08116 hypothetical protein; Validated
Probab=97.25 E-value=0.00053 Score=72.11 Aligned_cols=103 Identities=21% Similarity=0.220 Sum_probs=58.0
Q ss_pred EEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCccHHHHHHHHHhHhCCc
Q 038637 229 SVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSIANDQSNNDDDLNLLQEKLKKQLSGN 308 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k 308 (962)
.-+.++|..|+|||+||.++++. ...+-..+++++ ..+++..+...+.... ..+... +.+.+.+-
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~--l~~~~~~v~~~~------~~~ll~~i~~~~~~~~---~~~~~~----~~~~l~~~ 179 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANE--LIEKGVPVIFVN------FPQLLNRIKSTYKSSG---KEDENE----IIRSLVNA 179 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEE------HHHHHHHHHHHHhccc---cccHHH----HHHHhcCC
Confidence 45889999999999999999984 333333455664 4445555554443221 112222 22333333
Q ss_pred eEEEEEecCCCCCccchhh--ccCCCCC-CCCCcEEEEEecC
Q 038637 309 KFLLVLDDVWNKNYNYWSI--LSCPFGA-GAPGSKIVVTTRN 347 (962)
Q Consensus 309 r~LlVlDdv~~~~~~~~~~--l~~~l~~-~~~gs~ilvTtR~ 347 (962)
. ||||||+..+...+|.. +...+.. -..+..+|+||..
T Consensus 180 d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 180 D-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred C-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 3 89999995443344433 2222211 1245678999864
No 166
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.24 E-value=0.00042 Score=64.64 Aligned_cols=21 Identities=43% Similarity=0.542 Sum_probs=19.3
Q ss_pred EEEEcCCCchHHHHHHHHhCc
Q 038637 231 ISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 231 i~I~G~~GiGKTtLa~~v~~~ 251 (962)
|.|+|++|+||||+|+.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 579999999999999999984
No 167
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.20 E-value=0.0011 Score=62.67 Aligned_cols=87 Identities=18% Similarity=0.037 Sum_probs=45.9
Q ss_pred EEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCccHHHHHHHHHhHhCCc
Q 038637 229 SVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSIANDQSNNDDDLNLLQEKLKKQLSGN 308 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k 308 (962)
..+.|+|++|+||||+|+.++.... ......+++..+........... ........ ...........+.+..+..
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 77 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELG--PPGGGVIYIDGEDILEEVLDQLL--LIIVGGKK-ASGSGELRLRLALALARKL 77 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccC--CCCCCEEEECCEEccccCHHHHH--hhhhhccC-CCCCHHHHHHHHHHHHHhc
Confidence 5789999999999999999988432 22223455554443322222111 11111111 1122222233333333333
Q ss_pred -eEEEEEecCCCC
Q 038637 309 -KFLLVLDDVWNK 320 (962)
Q Consensus 309 -r~LlVlDdv~~~ 320 (962)
..+|++|+++..
T Consensus 78 ~~~viiiDei~~~ 90 (148)
T smart00382 78 KPDVLILDEITSL 90 (148)
T ss_pred CCCEEEEECCccc
Confidence 489999999664
No 168
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.19 E-value=0.0016 Score=75.89 Aligned_cols=50 Identities=24% Similarity=0.329 Sum_probs=40.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
.+++|.++.++++..++..... .....+++.|+|++|.||||+++.++..
T Consensus 84 del~~~~~ki~~l~~~l~~~~~-~~~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVL-ENAPKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhccc-ccCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5699999999999999865432 1223468999999999999999999873
No 169
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.13 E-value=0.012 Score=63.03 Aligned_cols=96 Identities=11% Similarity=0.152 Sum_probs=62.1
Q ss_pred CceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEEEecC-hhhHh-hhCCCCcccCCCCCHHHHHHHHHHhhcCCCCC
Q 038637 307 GNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVVTTRN-LDVAN-LTRAYPKYGLKELSDDDCLRVVIQHSLGATGF 384 (962)
Q Consensus 307 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~~-~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 384 (962)
+++-++|+|++...+...-..+...+.....++.+|++|.. ..+.. ..+-...+.+.+++.+++.+.+.+..
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~------ 185 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG------ 185 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC------
Confidence 45668999999665544445555555554467777776665 33332 22233568899999999998886531
Q ss_pred CCCcchHHHHHHHHHhcCCChHHHHHHH
Q 038637 385 STNQSLKDVGEKIAKKCKGLPLAAKTLG 412 (962)
Q Consensus 385 ~~~~~~~~~~~~I~~~c~glPLai~~~~ 412 (962)
.+ ...+..++..++|.|+.+..+.
T Consensus 186 -~~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 186 -VS---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred -CC---hHHHHHHHHHcCCCHHHHHHHh
Confidence 11 2336678999999998765444
No 170
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.13 E-value=0.0024 Score=72.49 Aligned_cols=165 Identities=13% Similarity=0.133 Sum_probs=88.5
Q ss_pred CccccchhhHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcc-----cceEEEEEeCC
Q 038637 201 AEVYGREKEEEEIVELLLNDGL-------RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRH-----FQFKAWACVSE 268 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-----F~~~~wv~v~~ 268 (962)
.++.|.+..+++|.+.+...-. .+-...+-+.++|++|.|||++|+++++.. ... +....|+.+..
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL--~~~i~~~~~~~~~fl~v~~ 259 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSL--AQRIGAETGDKSYFLNIKG 259 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhh--ccccccccCCceeEEeccc
Confidence 4578899999999887642110 011234568999999999999999999843 222 12233444332
Q ss_pred CCCHHHHHHHHHHHhccCCCCCCccHHHHHHHHHhHh-CCceEEEEEecCCCCC-------ccc-----hhhccCCCCCC
Q 038637 269 DFDVFRVTKSILKSIANDQSNNDDDLNLLQEKLKKQL-SGNKFLLVLDDVWNKN-------YNY-----WSILSCPFGAG 335 (962)
Q Consensus 269 ~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~-------~~~-----~~~l~~~l~~~ 335 (962)
. +++....+. .......+.+..+... .+++++|+||++..-- ..+ ...+...+...
T Consensus 260 ~--------eLl~kyvGe---te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl 328 (512)
T TIGR03689 260 P--------ELLNKYVGE---TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGV 328 (512)
T ss_pred h--------hhcccccch---HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccc
Confidence 1 111111000 0111122222222222 3578999999995310 001 11222222211
Q ss_pred --CCCcEEEEEecChhhHh-hh----CCCCcccCCCCCHHHHHHHHHHhh
Q 038637 336 --APGSKIVVTTRNLDVAN-LT----RAYPKYGLKELSDDDCLRVVIQHS 378 (962)
Q Consensus 336 --~~gs~ilvTtR~~~v~~-~~----~~~~~~~l~~L~~~~~~~Lf~~~a 378 (962)
..+..||.||...+... .+ .-...+.++..+.++..++|..+.
T Consensus 329 ~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 329 ESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred ccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 13445666665543221 11 223458899999999999998875
No 171
>PRK08118 topology modulation protein; Reviewed
Probab=97.12 E-value=0.0002 Score=69.54 Aligned_cols=35 Identities=31% Similarity=0.510 Sum_probs=27.6
Q ss_pred EEEEEEcCCCchHHHHHHHHhCccchh-cccceEEE
Q 038637 229 SVISINGMGGVGKTTLAQLVYNDDRVQ-RHFQFKAW 263 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~F~~~~w 263 (962)
+-|.|+|++|+||||||+.+++..... -+||..+|
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 358999999999999999999854433 45776665
No 172
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.09 E-value=0.0015 Score=72.63 Aligned_cols=180 Identities=13% Similarity=0.106 Sum_probs=95.1
Q ss_pred CCccccchhhHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCH
Q 038637 200 EAEVYGREKEEEEIVELLLNDGL-------RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDV 272 (962)
Q Consensus 200 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~ 272 (962)
-.++.|.+..+++|.+.+...-. .+-...+-|.++|++|.|||++|+++++. ....| +.+..
T Consensus 144 ~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~--l~~~f---i~i~~------ 212 (398)
T PTZ00454 144 YSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH--TTATF---IRVVG------ 212 (398)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE---EEEeh------
Confidence 35688999999888887642110 01124567889999999999999999984 22222 11211
Q ss_pred HHHHHHHHHHhccCCCCCCccHHHHHHHHHhHhCCceEEEEEecCCCCC-----------cc---chhhccCCCCC--CC
Q 038637 273 FRVTKSILKSIANDQSNNDDDLNLLQEKLKKQLSGNKFLLVLDDVWNKN-----------YN---YWSILSCPFGA--GA 336 (962)
Q Consensus 273 ~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----------~~---~~~~l~~~l~~--~~ 336 (962)
.. +.....+ .....+.+.+.......+.+|++|++..-. .. .+..+...+.. ..
T Consensus 213 s~----l~~k~~g------e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~ 282 (398)
T PTZ00454 213 SE----FVQKYLG------EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT 282 (398)
T ss_pred HH----HHHHhcc------hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC
Confidence 11 1111111 111222233333335678899999974210 00 01112222211 12
Q ss_pred CCcEEEEEecChhhHh-h-h---CCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCCh
Q 038637 337 PGSKIVVTTRNLDVAN-L-T---RAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLP 405 (962)
Q Consensus 337 ~gs~ilvTtR~~~v~~-~-~---~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glP 405 (962)
.+..||+||...+... . . .-...+.++..+.++..++|..+.-. .+.....+ ...+++.+.|+-
T Consensus 283 ~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~-~~l~~dvd----~~~la~~t~g~s 351 (398)
T PTZ00454 283 TNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSK-MNLSEEVD----LEDFVSRPEKIS 351 (398)
T ss_pred CCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhc-CCCCcccC----HHHHHHHcCCCC
Confidence 4567888887643322 1 1 12345788888888888888765422 11122222 345566666654
No 173
>PRK10536 hypothetical protein; Provisional
Probab=97.09 E-value=0.0059 Score=62.33 Aligned_cols=134 Identities=13% Similarity=0.195 Sum_probs=73.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEE----eCCC--C---C
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWAC----VSED--F---D 271 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~----v~~~--~---~ 271 (962)
..+.++......++.++.. ..+|.++|++|.|||+||.++..+.-..+.|+..+-+. +++. | +
T Consensus 55 ~~i~p~n~~Q~~~l~al~~--------~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~ 126 (262)
T PRK10536 55 SPILARNEAQAHYLKAIES--------KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGD 126 (262)
T ss_pred ccccCCCHHHHHHHHHHhc--------CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCC
Confidence 4567888889999998843 24899999999999999998876432233444333221 1110 0 1
Q ss_pred HHH----HHHHHHHHhccCCCCCCccHHHHHH--------HHHhHhCCceE---EEEEecCCCCCccchhhccCCCCCCC
Q 038637 272 VFR----VTKSILKSIANDQSNNDDDLNLLQE--------KLKKQLSGNKF---LLVLDDVWNKNYNYWSILSCPFGAGA 336 (962)
Q Consensus 272 ~~~----~~~~il~~l~~~~~~~~~~~~~~~~--------~l~~~l~~kr~---LlVlDdv~~~~~~~~~~l~~~l~~~~ 336 (962)
..+ .+.-+...+..-. .....+.+.. .=-.+++|+.+ +||+|.+.+.+..+...+... .+
T Consensus 127 ~~eK~~p~~~pi~D~L~~~~--~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR---~g 201 (262)
T PRK10536 127 IAEKFAPYFRPVYDVLVRRL--GASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTR---LG 201 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHh--ChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhh---cC
Confidence 111 1111111111100 0001111100 00134566554 999999987665544444433 34
Q ss_pred CCcEEEEEecC
Q 038637 337 PGSKIVVTTRN 347 (962)
Q Consensus 337 ~gs~ilvTtR~ 347 (962)
.+|++|+|--.
T Consensus 202 ~~sk~v~~GD~ 212 (262)
T PRK10536 202 ENVTVIVNGDI 212 (262)
T ss_pred CCCEEEEeCCh
Confidence 89999998754
No 174
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.08 E-value=0.0079 Score=65.61 Aligned_cols=168 Identities=8% Similarity=0.037 Sum_probs=86.8
Q ss_pred cccc-chhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHH
Q 038637 202 EVYG-REKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSIL 280 (962)
Q Consensus 202 ~~vG-r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 280 (962)
.++| -+..++.+...+.... -.....++|+.|+||||+|+.+.+..--....... .++...+-..+....-
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~-----l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~---~cg~C~~c~~~~~~~h 77 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNR-----LSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE---PCGTCTNCKRIDSGNH 77 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC---CCCcCHHHHHHhcCCC
Confidence 3567 6667778888775432 34566899999999999998886531100000000 0000000000000000
Q ss_pred HHhc-cCCCCCCccHHHHHHHHHhH----hCCceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEEEecCh-hhHh-h
Q 038637 281 KSIA-NDQSNNDDDLNLLQEKLKKQ----LSGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVVTTRNL-DVAN-L 353 (962)
Q Consensus 281 ~~l~-~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~-~ 353 (962)
-.+. ..........+++.+.+... ..+.+=++|+|++...+......+...+.....++.+|++|.+. .+.. .
T Consensus 78 pD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TI 157 (329)
T PRK08058 78 PDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTI 157 (329)
T ss_pred CCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHH
Confidence 0000 00000111122222222111 23455678999986655555566666666555677777777653 3322 2
Q ss_pred hCCCCcccCCCCCHHHHHHHHHHh
Q 038637 354 TRAYPKYGLKELSDDDCLRVVIQH 377 (962)
Q Consensus 354 ~~~~~~~~l~~L~~~~~~~Lf~~~ 377 (962)
..-...+++.++++++..+.+.+.
T Consensus 158 rSRc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 158 LSRCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred HhhceeeeCCCCCHHHHHHHHHHc
Confidence 223467999999999998888653
No 175
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.08 E-value=0.00039 Score=82.40 Aligned_cols=110 Identities=21% Similarity=0.224 Sum_probs=81.7
Q ss_pred cCCCCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCcccccccccCCCcCCeEeccCCCCcccc--ccc
Q 038637 581 CDVEHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILP--ESI 658 (962)
Q Consensus 581 ~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~~lp--~~i 658 (962)
.-+|.||+|.+.+.. +...-....+.+|++|+.||+|++ ++..+ ..+++|++|+.|.+++-.+..-+ ..+
T Consensus 145 ~~LPsL~sL~i~~~~------~~~~dF~~lc~sFpNL~sLDIS~T-nI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~L 216 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQ------FDNDDFSQLCASFPNLRSLDISGT-NISNL-SGISRLKNLQVLSMRNLEFESYQDLIDL 216 (699)
T ss_pred hhCcccceEEecCce------ecchhHHHHhhccCccceeecCCC-CccCc-HHHhccccHHHHhccCCCCCchhhHHHH
Confidence 468899999887743 111223456789999999999999 78877 67999999999999987776332 357
Q ss_pred cccccCcEEeeCCCcccccc------chhcccCCCccEEecCCCCC
Q 038637 659 NSLYNLHTILLENCWELKKL------CKDMGNLTKLRHLRNSDAGL 698 (962)
Q Consensus 659 ~~L~~L~~L~L~~~~~l~~l------p~~i~~L~~L~~L~l~~~~~ 698 (962)
.+|++|++||++.......- -..-..||+||.||.+++..
T Consensus 217 F~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 217 FNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred hcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcch
Confidence 78999999999977433211 11224589999999998864
No 176
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.04 E-value=0.0049 Score=68.82 Aligned_cols=146 Identities=18% Similarity=0.143 Sum_probs=84.0
Q ss_pred EEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCC-CHHHHHHHHHHHhccCCCCCCccHHHHHHHHHhHhCCc
Q 038637 230 VISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDF-DVFRVTKSILKSIANDQSNNDDDLNLLQEKLKKQLSGN 308 (962)
Q Consensus 230 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k 308 (962)
++.|+|+.++||||+++.+.... ... .+++..-+.. +..++ .+ ....+...-..+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~--~~~---~iy~~~~d~~~~~~~l-~d------------------~~~~~~~~~~~~ 94 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGL--LEE---IIYINFDDLRLDRIEL-LD------------------LLRAYIELKERE 94 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhC--Ccc---eEEEEecchhcchhhH-HH------------------HHHHHHHhhccC
Confidence 99999999999999997766532 121 3444332221 11111 11 111111111127
Q ss_pred eEEEEEecCCCCCccchhhccCCCCCCCCCcEEEEEecChhhHh-----h-hCCCCcccCCCCCHHHHHHHHHHhhcCCC
Q 038637 309 KFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVVTTRNLDVAN-----L-TRAYPKYGLKELSDDDCLRVVIQHSLGAT 382 (962)
Q Consensus 309 r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~-----~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~ 382 (962)
+..|+||.|.. ...|+.....+.+..+. +|++|+-+..... . .+-...+++.||+-.|...+--..+
T Consensus 95 ~~yifLDEIq~--v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~~~~---- 167 (398)
T COG1373 95 KSYIFLDEIQN--VPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKGEEI---- 167 (398)
T ss_pred CceEEEecccC--chhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhccccc----
Confidence 78999999954 46788887777766655 8888887754322 1 1223468899999988876532000
Q ss_pred CCCCCcchHHHHHHHHHhcCCChHHHHH
Q 038637 383 GFSTNQSLKDVGEKIAKKCKGLPLAAKT 410 (962)
Q Consensus 383 ~~~~~~~~~~~~~~I~~~c~glPLai~~ 410 (962)
... .. ...-.-.-..||.|-++..
T Consensus 168 --~~~-~~-~~~f~~Yl~~GGfP~~v~~ 191 (398)
T COG1373 168 --EPS-KL-ELLFEKYLETGGFPESVKA 191 (398)
T ss_pred --chh-HH-HHHHHHHHHhCCCcHHHhC
Confidence 000 11 1133334456888887754
No 177
>CHL00176 ftsH cell division protein; Validated
Probab=97.04 E-value=0.0032 Score=74.18 Aligned_cols=178 Identities=16% Similarity=0.200 Sum_probs=95.1
Q ss_pred CccccchhhHHHHHHHH---hcCCC---CCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHH
Q 038637 201 AEVYGREKEEEEIVELL---LNDGL---RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFR 274 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L---~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 274 (962)
.+++|.++.++++.+.+ ..... .+....+-|.++|++|.|||+||+.++... ... |+.++.. +
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~--~~p-----~i~is~s----~ 251 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA--EVP-----FFSISGS----E 251 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--CCC-----eeeccHH----H
Confidence 56889887776665544 22110 011234568999999999999999998732 211 2322211 1
Q ss_pred HHHHHHHHhccCCCCCCccHHHHHHHHHhHhCCceEEEEEecCCCCC----------ccc----hhhccCCCC--CCCCC
Q 038637 275 VTKSILKSIANDQSNNDDDLNLLQEKLKKQLSGNKFLLVLDDVWNKN----------YNY----WSILSCPFG--AGAPG 338 (962)
Q Consensus 275 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------~~~----~~~l~~~l~--~~~~g 338 (962)
+. .... ......+...+.......+++|++||+..-. ... +..+...+. ....+
T Consensus 252 f~----~~~~------g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ 321 (638)
T CHL00176 252 FV----EMFV------GVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKG 321 (638)
T ss_pred HH----HHhh------hhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCC
Confidence 11 0100 0111223344445556778999999994210 011 222222221 12345
Q ss_pred cEEEEEecChhhHh-hh----CCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCC
Q 038637 339 SKIVVTTRNLDVAN-LT----RAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGL 404 (962)
Q Consensus 339 s~ilvTtR~~~v~~-~~----~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~gl 404 (962)
-.||.||...+... .+ .-...+.+...+.++-.++++.++-... .........+++.+.|.
T Consensus 322 ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~-----~~~d~~l~~lA~~t~G~ 387 (638)
T CHL00176 322 VIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKK-----LSPDVSLELIARRTPGF 387 (638)
T ss_pred eeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcc-----cchhHHHHHHHhcCCCC
Confidence 56777776643322 11 1234677888888988888888763211 11123456677777773
No 178
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.02 E-value=0.014 Score=58.66 Aligned_cols=183 Identities=16% Similarity=0.199 Sum_probs=107.2
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeC-CCCCHHHHHHHHHHHhccCCCC-CCccHHHHHHHHHh
Q 038637 226 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVS-EDFDVFRVTKSILKSIANDQSN-NDDDLNLLQEKLKK 303 (962)
Q Consensus 226 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~-~~~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~l~~ 303 (962)
.+.+++.++|.-|.|||+++++...... =+.++-+.+. ...+...+...|...+..+... .....++....+..
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~~----~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~a 124 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASLN----EDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAA 124 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhcC----CCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHH
Confidence 3557999999999999999995543211 1112223333 4567788888888888773321 11223344444444
Q ss_pred Hh-CCce-EEEEEecCCCCCccchhhccCCCCCCCCC---cEEEEEecC--------hhhHhhhCCCCc-ccCCCCCHHH
Q 038637 304 QL-SGNK-FLLVLDDVWNKNYNYWSILSCPFGAGAPG---SKIVVTTRN--------LDVANLTRAYPK-YGLKELSDDD 369 (962)
Q Consensus 304 ~l-~~kr-~LlVlDdv~~~~~~~~~~l~~~l~~~~~g---s~ilvTtR~--------~~v~~~~~~~~~-~~l~~L~~~~ 369 (962)
.. +++| ..+++|+.........+.++....-...+ -+|+..-.. ........-... |++.|++.++
T Consensus 125 l~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~ 204 (269)
T COG3267 125 LVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAE 204 (269)
T ss_pred HHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHH
Confidence 44 4677 89999998665544444443322111111 224433222 111111111123 8999999999
Q ss_pred HHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHHHHHHh
Q 038637 370 CLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAAKTLGG 413 (962)
Q Consensus 370 ~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~ 413 (962)
...++..+.-+. ....+--..+....|..+..|.|.+|..++.
T Consensus 205 t~~yl~~~Le~a-~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 205 TGLYLRHRLEGA-GLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHHHHHHHHhcc-CCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 888888775443 2222222356677899999999999988774
No 179
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.01 E-value=0.0013 Score=66.73 Aligned_cols=36 Identities=25% Similarity=0.272 Sum_probs=28.5
Q ss_pred EEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEe
Q 038637 229 SVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACV 266 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v 266 (962)
--++|+|..|+|||||+..+.. .....|+.+.+++-
T Consensus 14 fr~viIG~sGSGKT~li~~lL~--~~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLY--YLRHKFDHIFLITP 49 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHH--hhcccCCEEEEEec
Confidence 3568999999999999999887 45677877666644
No 180
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.96 E-value=0.0047 Score=71.75 Aligned_cols=180 Identities=13% Similarity=0.139 Sum_probs=92.3
Q ss_pred CCccccchhhHHHHHHHHh---cCCC---CCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHH
Q 038637 200 EAEVYGREKEEEEIVELLL---NDGL---RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVF 273 (962)
Q Consensus 200 ~~~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 273 (962)
-.+++|.+..++++.+.+. .... .+....+-+.++|++|.|||+||+.++... ... ++.++. .
T Consensus 54 ~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~--~~~-----~~~i~~----~ 122 (495)
T TIGR01241 54 FKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA--GVP-----FFSISG----S 122 (495)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc--CCC-----eeeccH----H
Confidence 3568898887776665443 1100 011234558899999999999999998742 222 222221 1
Q ss_pred HHHHHHHHHhccCCCCCCccHHHHHHHHHhHhCCceEEEEEecCCCCC----------ccchhh----ccCCCC--CCCC
Q 038637 274 RVTKSILKSIANDQSNNDDDLNLLQEKLKKQLSGNKFLLVLDDVWNKN----------YNYWSI----LSCPFG--AGAP 337 (962)
Q Consensus 274 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------~~~~~~----l~~~l~--~~~~ 337 (962)
++. ....+ .....+...+.......+.+|++|++..-. ...+.. +...+. ....
T Consensus 123 ~~~----~~~~g------~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~ 192 (495)
T TIGR01241 123 DFV----EMFVG------VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNT 192 (495)
T ss_pred HHH----HHHhc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCC
Confidence 111 11101 111223333344444567899999983310 011111 111111 1223
Q ss_pred CcEEEEEecChh-hHhhh----CCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCCh
Q 038637 338 GSKIVVTTRNLD-VANLT----RAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLP 405 (962)
Q Consensus 338 gs~ilvTtR~~~-v~~~~----~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glP 405 (962)
+-.||.||.... +-..+ .-...+.++..+.++-.++|..+.-... ... ......+++.+.|.-
T Consensus 193 ~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~-~~~----~~~l~~la~~t~G~s 260 (495)
T TIGR01241 193 GVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKK-LAP----DVDLKAVARRTPGFS 260 (495)
T ss_pred CeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCC-CCc----chhHHHHHHhCCCCC
Confidence 445666776543 11111 2234678888888888888887653211 111 122447788887743
No 181
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.96 E-value=0.0055 Score=59.87 Aligned_cols=44 Identities=23% Similarity=0.333 Sum_probs=35.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhC
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
.++||-++.++++.-.-. +++.+.+.|.||+|+||||-+...++
T Consensus 27 ~dIVGNe~tv~rl~via~------~gnmP~liisGpPG~GKTTsi~~LAr 70 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAK------EGNMPNLIISGPPGTGKTTSILCLAR 70 (333)
T ss_pred HHhhCCHHHHHHHHHHHH------cCCCCceEeeCCCCCchhhHHHHHHH
Confidence 468999998888866653 34778899999999999998777765
No 182
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.96 E-value=0.019 Score=61.48 Aligned_cols=93 Identities=15% Similarity=0.135 Sum_probs=63.1
Q ss_pred CceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEEEecCh-hhHh-hhCCCCcccCCCCCHHHHHHHHHHhhcCCCCC
Q 038637 307 GNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVVTTRNL-DVAN-LTRAYPKYGLKELSDDDCLRVVIQHSLGATGF 384 (962)
Q Consensus 307 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~-~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 384 (962)
+++=++|+|++...+......+...+.....++.+|++|.+. .+.. ..+-...+.+.+++.++..+.+....
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~------ 180 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG------ 180 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC------
Confidence 445588899997766666777776666555667766666653 3332 22334578999999999999886531
Q ss_pred CCCcchHHHHHHHHHhcCCChHHHHHH
Q 038637 385 STNQSLKDVGEKIAKKCKGLPLAAKTL 411 (962)
Q Consensus 385 ~~~~~~~~~~~~I~~~c~glPLai~~~ 411 (962)
.. .+..++..++|.|+.+..+
T Consensus 181 -~~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 181 -IT-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred -Cc-----hHHHHHHHcCCCHHHHHHH
Confidence 01 1356788999999977655
No 183
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=96.93 E-value=0.028 Score=60.50 Aligned_cols=179 Identities=11% Similarity=0.063 Sum_probs=96.7
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhccc---ceE-----EEEEeCCCCCHHHHHHHHHH
Q 038637 210 EEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHF---QFK-----AWACVSEDFDVFRVTKSILK 281 (962)
Q Consensus 210 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F---~~~-----~wv~v~~~~~~~~~~~~il~ 281 (962)
-+.|...+..+. -.....++|+.|+||+++|+.++...--.... .|. -++..+.++|...+.-.
T Consensus 11 ~~~l~~~~~~~r-----l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~--- 82 (325)
T PRK06871 11 YQQITQAFQQGL-----GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPI--- 82 (325)
T ss_pred HHHHHHHHHcCC-----cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccc---
Confidence 445666664332 24567799999999999998886521100000 010 01111222221111000
Q ss_pred HhccCCCCCCccHHHHHHHHHhH-hCCceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEEEecCh-hhHhh-hCCCC
Q 038637 282 SIANDQSNNDDDLNLLQEKLKKQ-LSGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVVTTRNL-DVANL-TRAYP 358 (962)
Q Consensus 282 ~l~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~-~~~~~ 358 (962)
.+ .....++..++.+.+... ..+++=++|+|++...+......+...+.....++.+|++|.+. .+... .+-..
T Consensus 83 --~~-~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~ 159 (325)
T PRK06871 83 --DN-KDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQ 159 (325)
T ss_pred --cC-CCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhce
Confidence 00 000111222222222211 13566688899997766666667766676655677777777653 33322 22345
Q ss_pred cccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHH
Q 038637 359 KYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAA 408 (962)
Q Consensus 359 ~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai 408 (962)
.+.+.++++++..+.+..... .. ...+...+..++|.|+.+
T Consensus 160 ~~~~~~~~~~~~~~~L~~~~~------~~---~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 160 TWLIHPPEEQQALDWLQAQSS------AE---ISEILTALRINYGRPLLA 200 (325)
T ss_pred EEeCCCCCHHHHHHHHHHHhc------cC---hHHHHHHHHHcCCCHHHH
Confidence 789999999999988876531 01 123566788899999644
No 184
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.92 E-value=0.0041 Score=64.11 Aligned_cols=46 Identities=15% Similarity=0.133 Sum_probs=35.3
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHH
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRV 275 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~ 275 (962)
.-.++.|+|.+|+|||++|.+++.. ....-..++|++.. .++...+
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~--~~~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVE--AAKNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEECC-CCCHHHH
Confidence 5689999999999999999998863 22334678899887 5665544
No 185
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.92 E-value=0.00018 Score=64.10 Aligned_cols=76 Identities=21% Similarity=0.314 Sum_probs=51.9
Q ss_pred cCcchhhhCCCCcccEEEeCCCcCcccccccccCCCcCCeEeccCCCCccccccccccccCcEEeeCCCccccccchh
Q 038637 604 WSVPHMLLNHLPRLRVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLENCWELKKLCKD 681 (962)
Q Consensus 604 ~~~~~~~l~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~ 681 (962)
.++|..+..+++.++.|+|++| .+.++|..+..++.||.|+++.|.+...|.-|..|.+|-.|+..++ -..++|-+
T Consensus 66 k~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~n-a~~eid~d 141 (177)
T KOG4579|consen 66 KKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPEN-ARAEIDVD 141 (177)
T ss_pred hhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCC-ccccCcHH
Confidence 3455555566667777777777 6777776677777777777777777777777777777777777666 45555554
No 186
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.90 E-value=4.9e-05 Score=75.45 Aligned_cols=85 Identities=24% Similarity=0.252 Sum_probs=60.7
Q ss_pred CCCCcccEEEeCCCcCccc-----ccccccCCCcCCeEeccCCCCc----cccc-------cccccccCcEEeeCCCccc
Q 038637 612 NHLPRLRVFSLCGYCNIFN-----LPNEIGNLKHLRCLNLSRTRIQ----ILPE-------SINSLYNLHTILLENCWEL 675 (962)
Q Consensus 612 ~~l~~Lr~L~L~~~~~~~~-----lp~~i~~L~~Lr~L~Ls~~~i~----~lp~-------~i~~L~~L~~L~L~~~~~l 675 (962)
.-+..+..++||||. +.. +...|.+-.+|+..+++.-... ++|+ .+-++++||+.+|+.|-.-
T Consensus 27 ~~~d~~~evdLSGNt-igtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 27 EMMDELVEVDLSGNT-IGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HhhcceeEEeccCCc-ccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 347789999999994 432 3455667788999999863211 4444 3557899999999988544
Q ss_pred cccchh----cccCCCccEEecCCCC
Q 038637 676 KKLCKD----MGNLTKLRHLRNSDAG 697 (962)
Q Consensus 676 ~~lp~~----i~~L~~L~~L~l~~~~ 697 (962)
...|.. |..-+.|.||.+++|.
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCC
Confidence 455543 5677889999999887
No 187
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.90 E-value=0.024 Score=61.83 Aligned_cols=200 Identities=14% Similarity=0.161 Sum_probs=118.4
Q ss_pred chhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHH-HHHhCccchhcccceEEEEEeCCC---CCHHHHHHHHHH
Q 038637 206 REKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLA-QLVYNDDRVQRHFQFKAWACVSED---FDVFRVTKSILK 281 (962)
Q Consensus 206 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~F~~~~wv~v~~~---~~~~~~~~~il~ 281 (962)
|.+..++|..||.+..+ ..|.|.||.|+||+.|+ .++..+.+. +..++|.+- -+-..+++.++.
T Consensus 1 R~e~~~~L~~wL~e~~~------TFIvV~GPrGSGK~elV~d~~L~~r~~------vL~IDC~~i~~ar~D~~~I~~lA~ 68 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPN------TFIVVQGPRGSGKRELVMDHVLKDRKN------VLVIDCDQIVKARGDAAFIKNLAS 68 (431)
T ss_pred CchHHHHHHHHHhcCCC------eEEEEECCCCCCccHHHHHHHHhCCCC------EEEEEChHhhhccChHHHHHHHHH
Confidence 56778999999977654 79999999999999999 777664322 445554332 123334444444
Q ss_pred Hhc-----------------------cCCCCCCccH-HHHH-------HHHHh-------------------HhC---Cc
Q 038637 282 SIA-----------------------NDQSNNDDDL-NLLQ-------EKLKK-------------------QLS---GN 308 (962)
Q Consensus 282 ~l~-----------------------~~~~~~~~~~-~~~~-------~~l~~-------------------~l~---~k 308 (962)
++| +....-.... .++. ..|++ +|+ .+
T Consensus 69 qvGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~ 148 (431)
T PF10443_consen 69 QVGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPER 148 (431)
T ss_pred hcCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCcc
Confidence 433 2111111111 1111 11211 111 23
Q ss_pred eEEEEEecCCCCC---------ccchhhccCCCCCCCCCcEEEEEecChhhHhh----hC--CCCcccCCCCCHHHHHHH
Q 038637 309 KFLLVLDDVWNKN---------YNYWSILSCPFGAGAPGSKIVVTTRNLDVANL----TR--AYPKYGLKELSDDDCLRV 373 (962)
Q Consensus 309 r~LlVlDdv~~~~---------~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~----~~--~~~~~~l~~L~~~~~~~L 373 (962)
+-+||+|+.-... ..+|..... ..+=.+||++|-+...... +. ..+.+.|.-.+++.|.++
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv----~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~y 224 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLV----QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQY 224 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHH----hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHH
Confidence 6799999984422 123333211 1244578888877544433 22 345678999999999999
Q ss_pred HHHhhcCCCCC------------CC----CcchHHHHHHHHHhcCCChHHHHHHHhhhcCCCCh
Q 038637 374 VIQHSLGATGF------------ST----NQSLKDVGEKIAKKCKGLPLAAKTLGGLLRGKDDL 421 (962)
Q Consensus 374 f~~~a~~~~~~------------~~----~~~~~~~~~~I~~~c~glPLai~~~~~~L~~~~~~ 421 (962)
..++.-..... .. .....+-....++..||==.-+..+++.++...++
T Consensus 225 V~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p 288 (431)
T PF10443_consen 225 VLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESP 288 (431)
T ss_pred HHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCH
Confidence 99886432110 00 01244556678888999999999999998877554
No 188
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.87 E-value=0.00095 Score=71.60 Aligned_cols=51 Identities=18% Similarity=0.288 Sum_probs=42.1
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCcc
Q 038637 202 EVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDD 252 (962)
Q Consensus 202 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 252 (962)
+++|.++.++++++++...........+++.++|++|.||||||+.+.+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 699999999999999976432123456899999999999999999998743
No 189
>PRK08181 transposase; Validated
Probab=96.86 E-value=0.0017 Score=67.80 Aligned_cols=100 Identities=18% Similarity=0.109 Sum_probs=52.8
Q ss_pred EEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCccHHHHHHHHHhHhCCc
Q 038637 229 SVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSIANDQSNNDDDLNLLQEKLKKQLSGN 308 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k 308 (962)
.-+.++|++|+|||.||..+.+. .....-.+.|++ ..+++..+.... ...........+ . +
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~--a~~~g~~v~f~~------~~~L~~~l~~a~------~~~~~~~~l~~l----~-~ 167 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLA--LIENGWRVLFTR------TTDLVQKLQVAR------RELQLESAIAKL----D-K 167 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHH--HHHcCCceeeee------HHHHHHHHHHHH------hCCcHHHHHHHH----h-c
Confidence 45899999999999999999873 333333345553 344444443321 111222222222 1 3
Q ss_pred eEEEEEecCCCCCccchh--hccCCCCCCCCCcEEEEEecC
Q 038637 309 KFLLVLDDVWNKNYNYWS--ILSCPFGAGAPGSKIVVTTRN 347 (962)
Q Consensus 309 r~LlVlDdv~~~~~~~~~--~l~~~l~~~~~gs~ilvTtR~ 347 (962)
-=|||+||+.......|. .+...+.....+..+||||..
T Consensus 168 ~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~ 208 (269)
T PRK08181 168 FDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQ 208 (269)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 349999999543322222 222222211112358888875
No 190
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.86 E-value=0.00023 Score=70.79 Aligned_cols=15 Identities=20% Similarity=0.209 Sum_probs=9.2
Q ss_pred cCcCCccceEeEccC
Q 038637 902 DEVFPKLRKLSLFNC 916 (962)
Q Consensus 902 ~~~~p~L~~L~l~~c 916 (962)
.+.+|-|..|.+.+|
T Consensus 299 ~~~~p~L~~le~ngN 313 (388)
T COG5238 299 QDAVPLLVDLERNGN 313 (388)
T ss_pred hcccHHHHHHHHccC
Confidence 345666666666654
No 191
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.86 E-value=0.0068 Score=58.56 Aligned_cols=122 Identities=15% Similarity=0.130 Sum_probs=69.8
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCcc----chh--------------cccceEEEEEe
Q 038637 205 GREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDD----RVQ--------------RHFQFKAWACV 266 (962)
Q Consensus 205 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~----~~~--------------~~F~~~~wv~v 266 (962)
|-+...+.|.+.+.... -...+.++|+.|+||+++|..+.+.. ... .......|+.-
T Consensus 1 gq~~~~~~L~~~~~~~~-----l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-----LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCTC-------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHcCC-----cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 55666777777775432 24567899999999999998876531 110 11222334432
Q ss_pred CCC---CCHHHHHHHHHHHhccCCCCCCccHHHHHHHHHhHhCCceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEE
Q 038637 267 SED---FDVFRVTKSILKSIANDQSNNDDDLNLLQEKLKKQLSGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVV 343 (962)
Q Consensus 267 ~~~---~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv 343 (962)
... ....++ +.+...+..... .++.=++|+||+.......+..+...+......+.+|+
T Consensus 76 ~~~~~~i~i~~i-r~i~~~~~~~~~-----------------~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL 137 (162)
T PF13177_consen 76 DKKKKSIKIDQI-REIIEFLSLSPS-----------------EGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFIL 137 (162)
T ss_dssp TTSSSSBSHHHH-HHHHHHCTSS-T-----------------TSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEE
T ss_pred ccccchhhHHHH-HHHHHHHHHHHh-----------------cCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEE
Confidence 222 122222 133333322211 24566889999977777777777777766667888888
Q ss_pred EecChh
Q 038637 344 TTRNLD 349 (962)
Q Consensus 344 TtR~~~ 349 (962)
+|.+.+
T Consensus 138 ~t~~~~ 143 (162)
T PF13177_consen 138 ITNNPS 143 (162)
T ss_dssp EES-GG
T ss_pred EECChH
Confidence 888753
No 192
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.83 E-value=0.0042 Score=64.65 Aligned_cols=90 Identities=23% Similarity=0.182 Sum_probs=54.0
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhc----ccceEEEEEeCCCCCHHHHHHHHHHHhccCCC-----------CCC
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQR----HFQFKAWACVSEDFDVFRVTKSILKSIANDQS-----------NND 291 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~-----------~~~ 291 (962)
.-.++.|+|.+|+|||+||.+++....... .-..++|++....++..++. ++++..+.... ...
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~~ 96 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLV-QIAERFGLDPEEVLDNIYVARAYNS 96 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHH-HHHHHhccChHhHhcCEEEEecCCH
Confidence 568999999999999999999875322222 13578899988877765443 33343332110 011
Q ss_pred ccHHHHHHHHHhHhC-C-ceEEEEEecC
Q 038637 292 DDLNLLQEKLKKQLS-G-NKFLLVLDDV 317 (962)
Q Consensus 292 ~~~~~~~~~l~~~l~-~-kr~LlVlDdv 317 (962)
.+.......+.+.+. . +--+||+|.+
T Consensus 97 ~~l~~~l~~l~~~l~~~~~~~liVIDSi 124 (235)
T cd01123 97 DHQLQLLEELEAILIESSRIKLVIVDSV 124 (235)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEeCc
Confidence 122233344444443 3 5668888887
No 193
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.81 E-value=0.0071 Score=65.31 Aligned_cols=102 Identities=20% Similarity=0.165 Sum_probs=63.6
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccce-EEEEEeCCC-CCHHHHHHHHHHHhccCC
Q 038637 210 EEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQF-KAWACVSED-FDVFRVTKSILKSIANDQ 287 (962)
Q Consensus 210 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~-~~wv~v~~~-~~~~~~~~~il~~l~~~~ 287 (962)
..++++.+..-. .-.-+.|+|.+|+|||||++.+++... ..+-+. .+|+.+.+. .+..++.+.+...+....
T Consensus 120 ~~RvID~l~PiG-----kGQR~LIvG~pGtGKTTLl~~la~~i~-~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast 193 (380)
T PRK12608 120 SMRVVDLVAPIG-----KGQRGLIVAPPRAGKTVLLQQIAAAVA-ANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYAST 193 (380)
T ss_pred hHhhhhheeecC-----CCceEEEECCCCCCHHHHHHHHHHHHH-hcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeec
Confidence 345777776543 224558999999999999999887321 122233 467777765 467888888888776544
Q ss_pred CCCCccH----HHHHHHHHhHh--CCceEEEEEecC
Q 038637 288 SNNDDDL----NLLQEKLKKQL--SGNKFLLVLDDV 317 (962)
Q Consensus 288 ~~~~~~~----~~~~~~l~~~l--~~kr~LlVlDdv 317 (962)
.+..... ......+-+++ ++++.+||+|++
T Consensus 194 ~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 194 FDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 2111111 11111222222 589999999999
No 194
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.77 E-value=0.0038 Score=76.47 Aligned_cols=137 Identities=18% Similarity=0.200 Sum_probs=75.1
Q ss_pred CccccchhhHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGL---RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTK 277 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 277 (962)
..++|.+..++.+.+.+..... .......++.++|+.|+|||.||+.+... .-+.....+-++++.-.+..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~--l~~~~~~~~~~dmse~~~~~---- 639 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAEL--LYGGEQNLITINMSEFQEAH---- 639 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHH--HhCCCcceEEEeHHHhhhhh----
Confidence 4689999999999998854211 11234568899999999999999988763 21111222223322211110
Q ss_pred HHHHHhccCCCC--CCccHHHHHHHHHhHhCCceEEEEEecCCCCCccchhhccCCCCCCC-----------CCcEEEEE
Q 038637 278 SILKSIANDQSN--NDDDLNLLQEKLKKQLSGNKFLLVLDDVWNKNYNYWSILSCPFGAGA-----------PGSKIVVT 344 (962)
Q Consensus 278 ~il~~l~~~~~~--~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~-----------~gs~ilvT 344 (962)
-...+.+.... .......+.+.+++ ...-+|+||++...+...++.+...+..+. ..+-||+|
T Consensus 640 -~~~~l~g~~~gyvg~~~~g~L~~~v~~---~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~T 715 (852)
T TIGR03345 640 -TVSRLKGSPPGYVGYGEGGVLTEAVRR---KPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLT 715 (852)
T ss_pred -hhccccCCCCCcccccccchHHHHHHh---CCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEe
Confidence 11122222111 11122334444443 455699999996655556666655444332 34556666
Q ss_pred ecC
Q 038637 345 TRN 347 (962)
Q Consensus 345 tR~ 347 (962)
|..
T Consensus 716 SNl 718 (852)
T TIGR03345 716 SNA 718 (852)
T ss_pred CCC
Confidence 653
No 195
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.71 E-value=0.038 Score=63.18 Aligned_cols=202 Identities=17% Similarity=0.156 Sum_probs=119.2
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccc------hhcccceEEEEEeCCCCCHHHH
Q 038637 202 EVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDR------VQRHFQFKAWACVSEDFDVFRV 275 (962)
Q Consensus 202 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~------~~~~F~~~~wv~v~~~~~~~~~ 275 (962)
.+-+|+.+..+|-..+...-.. +...+.+.|.|-+|.|||..+..|.+... -...|+ .+.|+.-.-..+.++
T Consensus 397 sLpcRe~E~~~I~~f~~~~i~~-~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~~ 474 (767)
T KOG1514|consen 397 SLPCRENEFSEIEDFLRSFISD-QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPREI 474 (767)
T ss_pred cccchhHHHHHHHHHHHhhcCC-CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHHH
Confidence 3558999999999988765431 24556999999999999999999988432 112343 234444455679999
Q ss_pred HHHHHHHhccCCCCCCccHHHHHHHHHhHhC-----CceEEEEEecC---CCCCccchhhccCCCCC-CCCCcEEEEEec
Q 038637 276 TKSILKSIANDQSNNDDDLNLLQEKLKKQLS-----GNKFLLVLDDV---WNKNYNYWSILSCPFGA-GAPGSKIVVTTR 346 (962)
Q Consensus 276 ~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~-----~kr~LlVlDdv---~~~~~~~~~~l~~~l~~-~~~gs~ilvTtR 346 (962)
...|..++.+........ .+.+..+.. .+.++|++|++ |+..++ -+-..|.+ ..++||++|-+=
T Consensus 475 Y~~I~~~lsg~~~~~~~a----l~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~Qd---VlYn~fdWpt~~~sKLvvi~I 547 (767)
T KOG1514|consen 475 YEKIWEALSGERVTWDAA----LEALNFRFTVPKPKRSTTVVLIDELDILVTRSQD---VLYNIFDWPTLKNSKLVVIAI 547 (767)
T ss_pred HHHHHHhcccCcccHHHH----HHHHHHhhccCCCCCCCEEEEeccHHHHhcccHH---HHHHHhcCCcCCCCceEEEEe
Confidence 999999998765422233 333433332 35678888887 332221 12222322 346777666442
Q ss_pred C--hh---------hHhhhCCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHHHHHHhh
Q 038637 347 N--LD---------VANLTRAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAAKTLGGL 414 (962)
Q Consensus 347 ~--~~---------v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~~ 414 (962)
. .+ ++..++ ...+...+.++++-.++...+..+... ......+-++++++...|-.-.|+.+.-++
T Consensus 548 aNTmdlPEr~l~nrvsSRlg-~tRi~F~pYth~qLq~Ii~~RL~~~~~-f~~~aielvarkVAavSGDaRraldic~RA 624 (767)
T KOG1514|consen 548 ANTMDLPERLLMNRVSSRLG-LTRICFQPYTHEQLQEIISARLKGLDA-FENKAIELVARKVAAVSGDARRALDICRRA 624 (767)
T ss_pred cccccCHHHHhccchhhhcc-ceeeecCCCCHHHHHHHHHHhhcchhh-cchhHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 2 11 111111 134667777888877777766543311 223344455666666666555555555444
No 196
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.70 E-value=0.021 Score=60.13 Aligned_cols=55 Identities=20% Similarity=0.206 Sum_probs=34.8
Q ss_pred hHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHH
Q 038637 209 EEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVT 276 (962)
Q Consensus 209 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~ 276 (962)
-++++..++... .-|.+.|++|+|||+||+.+.+ .... ..+++++....+..+++
T Consensus 10 l~~~~l~~l~~g--------~~vLL~G~~GtGKT~lA~~la~--~lg~---~~~~i~~~~~~~~~dll 64 (262)
T TIGR02640 10 VTSRALRYLKSG--------YPVHLRGPAGTGKTTLAMHVAR--KRDR---PVMLINGDAELTTSDLV 64 (262)
T ss_pred HHHHHHHHHhcC--------CeEEEEcCCCCCHHHHHHHHHH--HhCC---CEEEEeCCccCCHHHHh
Confidence 345555555332 3456899999999999999986 2222 23456666655554443
No 197
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.70 E-value=0.0036 Score=75.80 Aligned_cols=165 Identities=18% Similarity=0.214 Sum_probs=85.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSIL 280 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 280 (962)
.+.+|.++.+++|+++|............++.++|++|+||||+|+.++.. ....|- -+..+...+..++...-
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~--l~~~~~---~i~~~~~~d~~~i~g~~- 395 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKA--TGRKYV---RMALGGVRDEAEIRGHR- 395 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHH--hCCCEE---EEEcCCCCCHHHhccch-
Confidence 468999999999999886422111234568999999999999999999872 333332 23333333332221110
Q ss_pred HHhccCCCCCCccHHHHHHHHHhHhCCceEEEEEecCCCCCccc----hhhccCCCCC---------------CCCCcEE
Q 038637 281 KSIANDQSNNDDDLNLLQEKLKKQLSGNKFLLVLDDVWNKNYNY----WSILSCPFGA---------------GAPGSKI 341 (962)
Q Consensus 281 ~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~----~~~l~~~l~~---------------~~~gs~i 341 (962)
+.. .......+...+... ....-+++||.+..-.... ...+...+.. .-...-+
T Consensus 396 ~~~------~g~~~G~~~~~l~~~-~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~ 468 (784)
T PRK10787 396 RTY------IGSMPGKLIQKMAKV-GVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMF 468 (784)
T ss_pred hcc------CCCCCcHHHHHHHhc-CCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEE
Confidence 000 111122333334332 2234478899984322111 1112111111 1123334
Q ss_pred EEEecChhhHhh-hCCCCcccCCCCCHHHHHHHHHHhh
Q 038637 342 VVTTRNLDVANL-TRAYPKYGLKELSDDDCLRVVIQHS 378 (962)
Q Consensus 342 lvTtR~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a 378 (962)
|.|+....+... ..-...+.+.++++++-.++..++.
T Consensus 469 i~TaN~~~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L 506 (784)
T PRK10787 469 VATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHL 506 (784)
T ss_pred EEcCCCCCCCHHHhcceeeeecCCCCHHHHHHHHHHhh
Confidence 445544322221 1122467888999888888877654
No 198
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.026 Score=64.44 Aligned_cols=104 Identities=25% Similarity=0.343 Sum_probs=68.6
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHH
Q 038637 200 EAEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSI 279 (962)
Q Consensus 200 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i 279 (962)
+.+.+|.++-+++|++++.-..-.++.+-+++..+|++|+|||.+|+.|+. -..+.|- -++|+.-.|..++
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~--ALnRkFf---RfSvGG~tDvAeI---- 480 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIAR--ALNRKFF---RFSVGGMTDVAEI---- 480 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHH--HhCCceE---EEeccccccHHhh----
Confidence 456789999999999999654433455789999999999999999999987 3334442 3455655555444
Q ss_pred HHHhccCCCC-CCccHHHHHHHHHhHhCCceEEEEEecC
Q 038637 280 LKSIANDQSN-NDDDLNLLQEKLKKQLSGNKFLLVLDDV 317 (962)
Q Consensus 280 l~~l~~~~~~-~~~~~~~~~~~l~~~l~~kr~LlVlDdv 317 (962)
.+.... -..-+..+++.++.. +...-|+.+|.|
T Consensus 481 ----kGHRRTYVGAMPGkiIq~LK~v-~t~NPliLiDEv 514 (906)
T KOG2004|consen 481 ----KGHRRTYVGAMPGKIIQCLKKV-KTENPLILIDEV 514 (906)
T ss_pred ----cccceeeeccCChHHHHHHHhh-CCCCceEEeehh
Confidence 111110 223344555555443 445678888988
No 199
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.68 E-value=0.0051 Score=65.87 Aligned_cols=122 Identities=16% Similarity=0.150 Sum_probs=68.8
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHhc
Q 038637 205 GREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSIA 284 (962)
Q Consensus 205 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~ 284 (962)
+|....+...+++..-.. ....+-+.++|..|+|||.||.++++.. ...-..+.++++ ..++..+-....
T Consensus 135 ~~~~~~~~~~~fi~~~~~--~~~~~gl~L~G~~G~GKThLa~Aia~~l--~~~g~~v~~~~~------~~l~~~lk~~~~ 204 (306)
T PRK08939 135 DRLDALMAALDFLEAYPP--GEKVKGLYLYGDFGVGKSYLLAAIANEL--AKKGVSSTLLHF------PEFIRELKNSIS 204 (306)
T ss_pred HHHHHHHHHHHHHHHhhc--cCCCCeEEEECCCCCCHHHHHHHHHHHH--HHcCCCEEEEEH------HHHHHHHHHHHh
Confidence 455555555666643221 1234678999999999999999999853 222223455544 344455544432
Q ss_pred cCCCCCCccHHHHHHHHHhHhCCceEEEEEecCCCCCccchhh--ccCCC-CCC-CCCcEEEEEecC
Q 038637 285 NDQSNNDDDLNLLQEKLKKQLSGNKFLLVLDDVWNKNYNYWSI--LSCPF-GAG-APGSKIVVTTRN 347 (962)
Q Consensus 285 ~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~--l~~~l-~~~-~~gs~ilvTtR~ 347 (962)
. .... +.+.. ++ +-=||||||+-.+....|.. +...+ ... ..+..+|+||-.
T Consensus 205 ~------~~~~---~~l~~-l~-~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 205 D------GSVK---EKIDA-VK-EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred c------CcHH---HHHHH-hc-CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 1 1122 22222 22 45589999997665566753 43333 222 245568888853
No 200
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.66 E-value=0.013 Score=71.90 Aligned_cols=51 Identities=31% Similarity=0.455 Sum_probs=38.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
.+++|.+..+++|.+++.........+.+++.++|++|+|||++|+.+++.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~ 370 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA 370 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 458899999999998775321111224458999999999999999999883
No 201
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.65 E-value=0.063 Score=58.38 Aligned_cols=179 Identities=14% Similarity=0.082 Sum_probs=97.7
Q ss_pred hHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccc---hhcccceE-----EEEEeCCCCCHHHHHHHHH
Q 038637 209 EEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDR---VQRHFQFK-----AWACVSEDFDVFRVTKSIL 280 (962)
Q Consensus 209 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~---~~~~F~~~-----~wv~v~~~~~~~~~~~~il 280 (962)
.-+++...+..+. -...+.+.|+.|+||+++|..++..-- ....-.|. -++..+.++|...+
T Consensus 10 ~~~~l~~~~~~~r-----l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i----- 79 (334)
T PRK07993 10 DYEQLVGSYQAGR-----GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL----- 79 (334)
T ss_pred HHHHHHHHHHcCC-----cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE-----
Confidence 3455666664432 356778999999999999988755210 00000110 01111222221111
Q ss_pred HHhccCCCCCCccHHHHH---HHHHh-HhCCceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEEEecC-hhhHhh-h
Q 038637 281 KSIANDQSNNDDDLNLLQ---EKLKK-QLSGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVVTTRN-LDVANL-T 354 (962)
Q Consensus 281 ~~l~~~~~~~~~~~~~~~---~~l~~-~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~~~-~ 354 (962)
...........+++. +.+.. -..+++=++|+|++...+...-..+...+.....++.+|++|.+ ..+... .
T Consensus 80 ---~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIr 156 (334)
T PRK07993 80 ---TPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLR 156 (334)
T ss_pred ---ecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHH
Confidence 000000112223322 22221 11356678999999766655666666666655566776666665 334322 2
Q ss_pred CCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHHH
Q 038637 355 RAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAAK 409 (962)
Q Consensus 355 ~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~ 409 (962)
+-...+.+.+++.++..+.+.... + .+ .+.+..++..++|.|..+.
T Consensus 157 SRCq~~~~~~~~~~~~~~~L~~~~-~-----~~---~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 157 SRCRLHYLAPPPEQYALTWLSREV-T-----MS---QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred hccccccCCCCCHHHHHHHHHHcc-C-----CC---HHHHHHHHHHcCCCHHHHH
Confidence 234568999999999988876531 1 11 2346788999999996443
No 202
>PRK07261 topology modulation protein; Provisional
Probab=96.64 E-value=0.0042 Score=60.67 Aligned_cols=66 Identities=20% Similarity=0.260 Sum_probs=40.2
Q ss_pred EEEEEcCCCchHHHHHHHHhCccchh-cccceEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCccHHHHHHHHHhHhCCc
Q 038637 230 VISINGMGGVGKTTLAQLVYNDDRVQ-RHFQFKAWACVSEDFDVFRVTKSILKSIANDQSNNDDDLNLLQEKLKKQLSGN 308 (962)
Q Consensus 230 vi~I~G~~GiGKTtLa~~v~~~~~~~-~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k 308 (962)
-|.|+|++|+||||||+.+....... -+.|...|-... ...+.++....+.+.+.+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~ 59 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNW----------------------QERDDDDMIADISNFLLKH 59 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecccc----------------------ccCCHHHHHHHHHHHHhCC
Confidence 47899999999999999987642221 234444442110 1223345555666666665
Q ss_pred eEEEEEecCCC
Q 038637 309 KFLLVLDDVWN 319 (962)
Q Consensus 309 r~LlVlDdv~~ 319 (962)
+ .|+|+...
T Consensus 60 ~--wIidg~~~ 68 (171)
T PRK07261 60 D--WIIDGNYS 68 (171)
T ss_pred C--EEEcCcch
Confidence 5 67787743
No 203
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.62 E-value=0.0067 Score=61.75 Aligned_cols=49 Identities=16% Similarity=0.198 Sum_probs=37.3
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHH
Q 038637 226 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTK 277 (962)
Q Consensus 226 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 277 (962)
+.-.++.|+|++|+|||++|.+++.. ....-..++|++... ++..++.+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~--~~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVN--AARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH--HHhCCCeEEEEECCC-CCHHHHHH
Confidence 35689999999999999999988763 333456788999876 66655544
No 204
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.61 E-value=0.047 Score=60.04 Aligned_cols=149 Identities=14% Similarity=0.173 Sum_probs=88.5
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCccHHHHHHHHHhHh
Q 038637 226 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSIANDQSNNDDDLNLLQEKLKKQL 305 (962)
Q Consensus 226 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 305 (962)
..+..+.+.|++|+|||+||..++. ...|+.+--++-..-.. .+ .......+.....+.-
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~----~S~FPFvKiiSpe~miG-------------~s---EsaKc~~i~k~F~DAY 595 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIAL----SSDFPFVKIISPEDMIG-------------LS---ESAKCAHIKKIFEDAY 595 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHh----hcCCCeEEEeChHHccC-------------cc---HHHHHHHHHHHHHHhh
Confidence 4677788999999999999999976 35687654442211110 00 1122233444455555
Q ss_pred CCceEEEEEecCCCCCccchhhccCC---------------CCCCCCCcEEEEEecChhhHhhhCC----CCcccCCCCC
Q 038637 306 SGNKFLLVLDDVWNKNYNYWSILSCP---------------FGAGAPGSKIVVTTRNLDVANLTRA----YPKYGLKELS 366 (962)
Q Consensus 306 ~~kr~LlVlDdv~~~~~~~~~~l~~~---------------l~~~~~gs~ilvTtR~~~v~~~~~~----~~~~~l~~L~ 366 (962)
++.--.||+||+ +...+|-.+..- .|..+..--|+-||....+...|+. ...|.++.++
T Consensus 596 kS~lsiivvDdi--ErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~ 673 (744)
T KOG0741|consen 596 KSPLSIIVVDDI--ERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLT 673 (744)
T ss_pred cCcceEEEEcch--hhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccC
Confidence 667789999999 333444433321 1222223335557877888877663 2467888888
Q ss_pred H-HHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhc
Q 038637 367 D-DDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKC 401 (962)
Q Consensus 367 ~-~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c 401 (962)
. ++..+.++..- ...+...+.++.+...+|
T Consensus 674 ~~~~~~~vl~~~n-----~fsd~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 674 TGEQLLEVLEELN-----IFSDDEVRAIAEQLLSKK 704 (744)
T ss_pred chHHHHHHHHHcc-----CCCcchhHHHHHHHhccc
Confidence 7 77777776632 122334456666666666
No 205
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.49 E-value=0.0092 Score=73.81 Aligned_cols=124 Identities=16% Similarity=0.189 Sum_probs=70.1
Q ss_pred CccccchhhHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGL---RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTK 277 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 277 (962)
..++|.+..++.+.+.+..... .......++.++|+.|+|||++|+.+... ....-...+.++++.-.+...+
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~--l~~~~~~~i~~d~s~~~~~~~~-- 640 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEF--LFDDEDAMVRIDMSEYMEKHSV-- 640 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHH--hcCCCCcEEEEechhhcccchH--
Confidence 4589999999999999875321 01123467889999999999999999873 2111123344444433221111
Q ss_pred HHHHHhccCCCC-CCccHHHHHHHHHhHhCCceEEEEEecCCCCCccchhhccCCCC
Q 038637 278 SILKSIANDQSN-NDDDLNLLQEKLKKQLSGNKFLLVLDDVWNKNYNYWSILSCPFG 333 (962)
Q Consensus 278 ~il~~l~~~~~~-~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~ 333 (962)
..-++.+... ...+...+...++. ....+|+||++...+...+..+...+.
T Consensus 641 --~~l~g~~~g~~g~~~~g~l~~~v~~---~p~~vlllDeieka~~~v~~~Ll~~l~ 692 (852)
T TIGR03346 641 --ARLIGAPPGYVGYEEGGQLTEAVRR---KPYSVVLFDEVEKAHPDVFNVLLQVLD 692 (852)
T ss_pred --HHhcCCCCCccCcccccHHHHHHHc---CCCcEEEEeccccCCHHHHHHHHHHHh
Confidence 1112221110 11122333344432 233489999997766667776666554
No 206
>PRK06921 hypothetical protein; Provisional
Probab=96.47 E-value=0.007 Score=63.61 Aligned_cols=37 Identities=24% Similarity=0.187 Sum_probs=27.5
Q ss_pred cEEEEEEcCCCchHHHHHHHHhCccchhcc-cceEEEEEe
Q 038637 228 FSVISINGMGGVGKTTLAQLVYNDDRVQRH-FQFKAWACV 266 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-F~~~~wv~v 266 (962)
...+.++|..|+|||+||.++++. +... -..+++++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~--l~~~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANE--LMRKKGVPVLYFPF 154 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHH--HhhhcCceEEEEEH
Confidence 467899999999999999999984 3332 334566653
No 207
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.44 E-value=0.00042 Score=78.21 Aligned_cols=105 Identities=19% Similarity=0.170 Sum_probs=75.0
Q ss_pred ccCCCCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCccccccc-ccCCCcCCeEeccCCCCccccccc
Q 038637 580 VCDVEHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFNLPNE-IGNLKHLRCLNLSRTRIQILPESI 658 (962)
Q Consensus 580 ~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~lp~~-i~~L~~Lr~L~Ls~~~i~~lp~~i 658 (962)
+.-++.+++|.+..++ +.. ...+..|++|+.|||++| .+..+|.- ...+ +|..|.|++|.++.| ..|
T Consensus 183 Lqll~ale~LnLshNk------~~~---v~~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc-~L~~L~lrnN~l~tL-~gi 250 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNK------FTK---VDNLRRLPKLKHLDLSYN-CLRHVPQLSMVGC-KLQLLNLRNNALTTL-RGI 250 (1096)
T ss_pred HHHHHHhhhhccchhh------hhh---hHHHHhcccccccccccc-hhccccccchhhh-hheeeeecccHHHhh-hhH
Confidence 3345677787776653 111 124677889999999998 68878742 2233 499999999988877 467
Q ss_pred cccccCcEEeeCCCccccccc--hhcccCCCccEEecCCCC
Q 038637 659 NSLYNLHTILLENCWELKKLC--KDMGNLTKLRHLRNSDAG 697 (962)
Q Consensus 659 ~~L~~L~~L~L~~~~~l~~lp--~~i~~L~~L~~L~l~~~~ 697 (962)
.+|.+|+.||+++| .+.... .-++.|..|+.|.+.||+
T Consensus 251 e~LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 251 ENLKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred HhhhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 88999999999988 443321 136778889999999987
No 208
>PRK12377 putative replication protein; Provisional
Probab=96.44 E-value=0.014 Score=60.35 Aligned_cols=102 Identities=21% Similarity=0.123 Sum_probs=54.7
Q ss_pred cEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCccHHHHHHHHHhHhCC
Q 038637 228 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSIANDQSNNDDDLNLLQEKLKKQLSG 307 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 307 (962)
...+.++|.+|+|||+||.++++. .......++++++ .+++..+-..... ....... + +.+ .
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~--l~~~g~~v~~i~~------~~l~~~l~~~~~~-----~~~~~~~---l-~~l-~ 162 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNR--LLAKGRSVIVVTV------PDVMSRLHESYDN-----GQSGEKF---L-QEL-C 162 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHcCCCeEEEEH------HHHHHHHHHHHhc-----cchHHHH---H-HHh-c
Confidence 357899999999999999999984 3333334566644 3444444333311 1111112 2 222 3
Q ss_pred ceEEEEEecCCCCCccchhh--ccCCCCCC-CCCcEEEEEecC
Q 038637 308 NKFLLVLDDVWNKNYNYWSI--LSCPFGAG-APGSKIVVTTRN 347 (962)
Q Consensus 308 kr~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~ilvTtR~ 347 (962)
+--||||||+-......|.. +...+... ...--+||||-.
T Consensus 163 ~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 163 KVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 45699999994443334432 22222211 122346777753
No 209
>PRK06526 transposase; Provisional
Probab=96.43 E-value=0.0036 Score=65.13 Aligned_cols=23 Identities=30% Similarity=0.206 Sum_probs=20.4
Q ss_pred EEEEEEcCCCchHHHHHHHHhCc
Q 038637 229 SVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
.-+.|+|++|+|||+||..+...
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~ 121 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIR 121 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHH
Confidence 46899999999999999999763
No 210
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.43 E-value=0.0022 Score=73.07 Aligned_cols=165 Identities=22% Similarity=0.248 Sum_probs=91.9
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHH
Q 038637 200 EAEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSI 279 (962)
Q Consensus 200 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i 279 (962)
+.+.+|.++.+++|+++|.-..-...-+-+++.+||++|+|||.|++.|+. -..+.|- -++++.--|..++
T Consensus 322 d~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~--al~Rkfv---R~sLGGvrDEAEI---- 392 (782)
T COG0466 322 DKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAK--ALGRKFV---RISLGGVRDEAEI---- 392 (782)
T ss_pred cccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHH--HhCCCEE---EEecCccccHHHh----
Confidence 456789999999999999643321234568999999999999999999998 4445553 3344444443333
Q ss_pred HHHhccCCCC-CCccHHHHHHHHHhHhCCceEEEEEecCCCCC----------------ccchhhccCCCCCC-CCCcE-
Q 038637 280 LKSIANDQSN-NDDDLNLLQEKLKKQLSGNKFLLVLDDVWNKN----------------YNYWSILSCPFGAG-APGSK- 340 (962)
Q Consensus 280 l~~l~~~~~~-~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------------~~~~~~l~~~l~~~-~~gs~- 340 (962)
.+.... -..-+..+.+.+++. +.+.-+++||.+.-.. +++-..+....... --=|.
T Consensus 393 ----RGHRRTYIGamPGrIiQ~mkka-~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~V 467 (782)
T COG0466 393 ----RGHRRTYIGAMPGKIIQGMKKA-GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKV 467 (782)
T ss_pred ----ccccccccccCChHHHHHHHHh-CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhhe
Confidence 111110 112234444444432 4577899999983211 01111111111100 01133
Q ss_pred EEEEecC-hh-h-HhhhCCCCcccCCCCCHHHHHHHHHHhh
Q 038637 341 IVVTTRN-LD-V-ANLTRAYPKYGLKELSDDDCLRVVIQHS 378 (962)
Q Consensus 341 ilvTtR~-~~-v-~~~~~~~~~~~l~~L~~~~~~~Lf~~~a 378 (962)
+.|||-+ .+ + +..+.-..++++.+.+++|-.++-+++.
T Consensus 468 mFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~L 508 (782)
T COG0466 468 MFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHL 508 (782)
T ss_pred EEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhc
Confidence 3344433 22 1 2223334578888888888887776664
No 211
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.42 E-value=0.00092 Score=67.60 Aligned_cols=79 Identities=24% Similarity=0.173 Sum_probs=45.4
Q ss_pred CcccEEEeCCCcCccccc--ccc-cCCCcCCeEeccCCCCccc---cccccccccCcEEeeCCCcc---ccccchhcccC
Q 038637 615 PRLRVFSLCGYCNIFNLP--NEI-GNLKHLRCLNLSRTRIQIL---PESINSLYNLHTILLENCWE---LKKLCKDMGNL 685 (962)
Q Consensus 615 ~~Lr~L~L~~~~~~~~lp--~~i-~~L~~Lr~L~Ls~~~i~~l---p~~i~~L~~L~~L~L~~~~~---l~~lp~~i~~L 685 (962)
+.+..|.+.++ .+...- ..| ....+++.|||.+|.|+.. -..+.+|+.|++|+|+.|.. ++.+| ..+
T Consensus 45 ra~ellvln~~-~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp---~p~ 120 (418)
T KOG2982|consen 45 RALELLVLNGS-IIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP---LPL 120 (418)
T ss_pred cchhhheecCC-CCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc---ccc
Confidence 34456666666 454432 223 3567888899988888743 33344677777777777621 11222 234
Q ss_pred CCccEEecCCCC
Q 038637 686 TKLRHLRNSDAG 697 (962)
Q Consensus 686 ~~L~~L~l~~~~ 697 (962)
.+|+.|-++++.
T Consensus 121 ~nl~~lVLNgT~ 132 (418)
T KOG2982|consen 121 KNLRVLVLNGTG 132 (418)
T ss_pred cceEEEEEcCCC
Confidence 466666666554
No 212
>PRK09183 transposase/IS protein; Provisional
Probab=96.41 E-value=0.0049 Score=64.56 Aligned_cols=23 Identities=39% Similarity=0.433 Sum_probs=20.2
Q ss_pred EEEEEEcCCCchHHHHHHHHhCc
Q 038637 229 SVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
..+.|+|++|+|||+||..+...
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHH
Confidence 46789999999999999999763
No 213
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.39 E-value=8.9e-05 Score=83.37 Aligned_cols=83 Identities=25% Similarity=0.295 Sum_probs=61.5
Q ss_pred hCCCCcccEEEeCCCcCcccccccccCCCcCCeEeccCCCCccccccccccccCcEEeeCCCccccccchhcccCCCccE
Q 038637 611 LNHLPRLRVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLENCWELKKLCKDMGNLTKLRH 690 (962)
Q Consensus 611 l~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 690 (962)
+.-++.|+.|+|++| .+...- .+..|++|++|||++|.+..+|.--.--.+|+.|.+++| .+..+ .++.+|.+|++
T Consensus 183 Lqll~ale~LnLshN-k~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN-~l~tL-~gie~LksL~~ 258 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHN-KFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNN-ALTTL-RGIENLKSLYG 258 (1096)
T ss_pred HHHHHHhhhhccchh-hhhhhH-HHHhcccccccccccchhccccccchhhhhheeeeeccc-HHHhh-hhHHhhhhhhc
Confidence 455678888888888 566654 577888888888888888877763222223888888888 56665 35888888888
Q ss_pred EecCCCC
Q 038637 691 LRNSDAG 697 (962)
Q Consensus 691 L~l~~~~ 697 (962)
||+++|-
T Consensus 259 LDlsyNl 265 (1096)
T KOG1859|consen 259 LDLSYNL 265 (1096)
T ss_pred cchhHhh
Confidence 8888875
No 214
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.058 Score=56.84 Aligned_cols=188 Identities=17% Similarity=0.162 Sum_probs=103.1
Q ss_pred CccccchhhHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGL-------RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVF 273 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 273 (962)
.++=|-++.+++|.+...-+-. -+=..++=|.++|++|.|||-||++|++ +....|-.+ ..
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~--~T~AtFIrv-----vg----- 218 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVAN--QTDATFIRV-----VG----- 218 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCceEEEe-----cc-----
Confidence 4455799999999887743211 0123567788999999999999999999 444444322 11
Q ss_pred HHHHHHHHHhccCCCCCCccHHHHHHHHHhHhC-CceEEEEEecCCCC-----------Ccc---chhhccCCCCCC--C
Q 038637 274 RVTKSILKSIANDQSNNDDDLNLLQEKLKKQLS-GNKFLLVLDDVWNK-----------NYN---YWSILSCPFGAG--A 336 (962)
Q Consensus 274 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~~-----------~~~---~~~~l~~~l~~~--~ 336 (962)
.++++..-+. ...++..+.+.-+ ..+..|++|.+..- +.+ ..-++...+... .
T Consensus 219 ---SElVqKYiGE-------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~ 288 (406)
T COG1222 219 ---SELVQKYIGE-------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPR 288 (406)
T ss_pred ---HHHHHHHhcc-------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCC
Confidence 1233332222 1234455555444 45788888887320 001 111222233221 2
Q ss_pred CCcEEEEEecChhhHhh-----hCCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCCh----HH
Q 038637 337 PGSKIVVTTRNLDVANL-----TRAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLP----LA 407 (962)
Q Consensus 337 ~gs~ilvTtR~~~v~~~-----~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glP----La 407 (962)
..-|||..|-..++..- ..-...++++.-+.+.-.++|.-|+-.-. ....-++ +.|++.|.|.- -|
T Consensus 289 ~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~-l~~dvd~----e~la~~~~g~sGAdlka 363 (406)
T COG1222 289 GNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMN-LADDVDL----ELLARLTEGFSGADLKA 363 (406)
T ss_pred CCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhcc-CccCcCH----HHHHHhcCCCchHHHHH
Confidence 45688988876554331 12335677776666666677776653221 1222233 44566666654 34
Q ss_pred HHHHHhhh
Q 038637 408 AKTLGGLL 415 (962)
Q Consensus 408 i~~~~~~L 415 (962)
|.+=|+++
T Consensus 364 ictEAGm~ 371 (406)
T COG1222 364 ICTEAGMF 371 (406)
T ss_pred HHHHHhHH
Confidence 44555554
No 215
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.39 E-value=0.057 Score=58.58 Aligned_cols=94 Identities=14% Similarity=0.170 Sum_probs=62.3
Q ss_pred CceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEEEecC-hhhHhh-hCCCCcccCCCCCHHHHHHHHHHhhcCCCCC
Q 038637 307 GNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVVTTRN-LDVANL-TRAYPKYGLKELSDDDCLRVVIQHSLGATGF 384 (962)
Q Consensus 307 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~ 384 (962)
+++=++|+|++...+...+..+...+....+++.+|++|.+ ..+... .+-...+.+.+++.++..+.+.....
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~~----- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQGV----- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcCC-----
Confidence 45558889999777777777777777666667766665555 433322 22335789999999999998876411
Q ss_pred CCCcchHHHHHHHHHhcCCChHHHHHHH
Q 038637 385 STNQSLKDVGEKIAKKCKGLPLAAKTLG 412 (962)
Q Consensus 385 ~~~~~~~~~~~~I~~~c~glPLai~~~~ 412 (962)
.+ ...++..++|.|+.+..+.
T Consensus 206 --~~-----~~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 206 --AD-----ADALLAEAGGAPLAALALA 226 (342)
T ss_pred --Ch-----HHHHHHHcCCCHHHHHHHH
Confidence 11 1235778899997554443
No 216
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.39 E-value=0.0085 Score=62.59 Aligned_cols=90 Identities=24% Similarity=0.223 Sum_probs=53.8
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchh----cccceEEEEEeCCCCCHHHHHHHHHHHhccCCCC--------CCccH
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQ----RHFQFKAWACVSEDFDVFRVTKSILKSIANDQSN--------NDDDL 294 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~--------~~~~~ 294 (962)
.-.+.-|+|++|+|||.|+.+++-...+. +.=..++|++....|+..++. +|++....+... ...+.
T Consensus 37 ~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~ 115 (256)
T PF08423_consen 37 TGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDL 115 (256)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSH
T ss_pred CCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCH
Confidence 45799999999999999998776432222 122358899999999887775 466654322100 11122
Q ss_pred HHH---HHHHHhHh-CCceEEEEEecC
Q 038637 295 NLL---QEKLKKQL-SGNKFLLVLDDV 317 (962)
Q Consensus 295 ~~~---~~~l~~~l-~~kr~LlVlDdv 317 (962)
+++ ...+...+ +++--|||+|.+
T Consensus 116 ~~l~~~L~~l~~~l~~~~ikLIVIDSI 142 (256)
T PF08423_consen 116 EELLELLEQLPKLLSESKIKLIVIDSI 142 (256)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred HHHHHHHHHHHhhccccceEEEEecch
Confidence 333 33333333 234458888888
No 217
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.37 E-value=0.009 Score=73.54 Aligned_cols=123 Identities=16% Similarity=0.174 Sum_probs=67.2
Q ss_pred CccccchhhHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGL---RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTK 277 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 277 (962)
..++|.+..++.+...+..... ..+....++.++|+.|+|||++|+.+++.. ...-...+.++++.-...
T Consensus 568 ~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l--~~~~~~~i~id~se~~~~----- 640 (857)
T PRK10865 568 HRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM--FDSDDAMVRIDMSEFMEK----- 640 (857)
T ss_pred CeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh--hcCCCcEEEEEhHHhhhh-----
Confidence 3588999999999888864321 011233578899999999999999998632 111122344444332111
Q ss_pred HHHHHhccCCCC-CC-ccHHHHHHHHHhHhCCceEEEEEecCCCCCccchhhccCCCC
Q 038637 278 SILKSIANDQSN-ND-DDLNLLQEKLKKQLSGNKFLLVLDDVWNKNYNYWSILSCPFG 333 (962)
Q Consensus 278 ~il~~l~~~~~~-~~-~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~ 333 (962)
.....+.+..+. .. .....+.+.++. ...-+|+||++...+...+..+...+.
T Consensus 641 ~~~~~LiG~~pgy~g~~~~g~l~~~v~~---~p~~vLllDEieka~~~v~~~Ll~ile 695 (857)
T PRK10865 641 HSVSRLVGAPPGYVGYEEGGYLTEAVRR---RPYSVILLDEVEKAHPDVFNILLQVLD 695 (857)
T ss_pred hhHHHHhCCCCcccccchhHHHHHHHHh---CCCCeEEEeehhhCCHHHHHHHHHHHh
Confidence 112222222211 11 111223333321 223599999996656666666655443
No 218
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.36 E-value=0.012 Score=71.78 Aligned_cols=121 Identities=19% Similarity=0.249 Sum_probs=69.3
Q ss_pred CccccchhhHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGL---RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTK 277 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 277 (962)
..++|.+..++.|.+.+..... ..+....++.++|+.|+|||+||+.++... +...+.++.++-.+...
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l-----~~~~~~~d~se~~~~~~--- 525 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL-----GVHLERFDMSEYMEKHT--- 525 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh-----cCCeEEEeCchhhhccc---
Confidence 4588999999999888864211 012234578999999999999999998732 22345555544222111
Q ss_pred HHHHHhccCCCC-CCccHHHHHHHHHhHhCCceEEEEEecCCCCCccchhhccCCCC
Q 038637 278 SILKSIANDQSN-NDDDLNLLQEKLKKQLSGNKFLLVLDDVWNKNYNYWSILSCPFG 333 (962)
Q Consensus 278 ~il~~l~~~~~~-~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~ 333 (962)
+...++.+... .......+.+.++. ...-+++||++...+.+.+..+...+.
T Consensus 526 -~~~lig~~~gyvg~~~~~~l~~~~~~---~p~~VvllDEieka~~~~~~~Ll~~ld 578 (731)
T TIGR02639 526 -VSRLIGAPPGYVGFEQGGLLTEAVRK---HPHCVLLLDEIEKAHPDIYNILLQVMD 578 (731)
T ss_pred -HHHHhcCCCCCcccchhhHHHHHHHh---CCCeEEEEechhhcCHHHHHHHHHhhc
Confidence 11112221110 11122333333332 334599999997666666666655554
No 219
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=96.35 E-value=0.032 Score=58.10 Aligned_cols=172 Identities=23% Similarity=0.214 Sum_probs=88.8
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCc-cchhcccceEEEEEeCCCCCH-HHHHHHH
Q 038637 202 EVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYND-DRVQRHFQFKAWACVSEDFDV-FRVTKSI 279 (962)
Q Consensus 202 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~-~~~~~~F~~~~wv~v~~~~~~-~~~~~~i 279 (962)
.++|-.++..++-.++..... .+...-|.|+|+.|.|||+|...+..+ .+...+| .-|........ +-.++.|
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~--~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~---l~v~Lng~~~~dk~al~~I 99 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTIL--HGESNSVIIIGPRGSGKTILIDTRLSDIQENGENF---LLVRLNGELQTDKIALKGI 99 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHH--hcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeE---EEEEECccchhhHHHHHHH
Confidence 477888888888888754321 123456789999999999998777765 1222332 33334333322 2234555
Q ss_pred HHHhccCCCC---CC----ccHHHHHHHHHhHh--CCceEEEEEecCCCCCccchhhccC-----CCCCCCCCcEEEEEe
Q 038637 280 LKSIANDQSN---ND----DDLNLLQEKLKKQL--SGNKFLLVLDDVWNKNYNYWSILSC-----PFGAGAPGSKIVVTT 345 (962)
Q Consensus 280 l~~l~~~~~~---~~----~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~~~~~~~l~~-----~l~~~~~gs~ilvTt 345 (962)
.+|+...... .. ++...+...+...- .+-++++|+|.+.-.....-..+.- .-....+-+-|-+||
T Consensus 100 ~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Tt 179 (408)
T KOG2228|consen 100 TRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTT 179 (408)
T ss_pred HHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeec
Confidence 5554332110 22 22333333333211 1235788887773321111111111 111233556677899
Q ss_pred cCh-------hhHhhhCCCCcccCCCCCHHHHHHHHHHhh
Q 038637 346 RNL-------DVANLTRAYPKYGLKELSDDDCLRVVIQHS 378 (962)
Q Consensus 346 R~~-------~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a 378 (962)
|-. .|-.......++-++.++-++...++++..
T Consensus 180 rld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 180 RLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 863 233323333345567777777777777654
No 220
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.35 E-value=0.011 Score=58.67 Aligned_cols=127 Identities=21% Similarity=0.235 Sum_probs=64.0
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEe----CCC--CCHH-----
Q 038637 205 GREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACV----SED--FDVF----- 273 (962)
Q Consensus 205 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v----~~~--~~~~----- 273 (962)
.+..+-...++.|.. ..++.+.|++|.|||.||-+..-+.-..+.|+..+++.- ++. |-+-
T Consensus 4 p~~~~Q~~~~~al~~--------~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK 75 (205)
T PF02562_consen 4 PKNEEQKFALDALLN--------NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEK 75 (205)
T ss_dssp --SHHHHHHHHHHHH---------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS-------
T ss_pred CCCHHHHHHHHHHHh--------CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHH
Confidence 344556666777752 258999999999999999888765444577877776532 111 1000
Q ss_pred -----HHHHHHHHHhccCCCCCCccHHHHHHHH------HhHhCCc---eEEEEEecCCCCCccchhhccCCCCCCCCCc
Q 038637 274 -----RVTKSILKSIANDQSNNDDDLNLLQEKL------KKQLSGN---KFLLVLDDVWNKNYNYWSILSCPFGAGAPGS 339 (962)
Q Consensus 274 -----~~~~~il~~l~~~~~~~~~~~~~~~~~l------~~~l~~k---r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 339 (962)
.-+.+.+..+. .....+.+.+.= -.+++|+ ..+||+|++.+.+..++..+..- .+.||
T Consensus 76 ~~p~~~p~~d~l~~~~-----~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~s 147 (205)
T PF02562_consen 76 MEPYLRPIYDALEELF-----GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGS 147 (205)
T ss_dssp --TTTHHHHHHHTTTS------TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-
T ss_pred HHHHHHHHHHHHHHHh-----ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCc
Confidence 11122222221 111122221100 1334554 46999999988777777776554 34899
Q ss_pred EEEEEecC
Q 038637 340 KIVVTTRN 347 (962)
Q Consensus 340 ~ilvTtR~ 347 (962)
|||++--.
T Consensus 148 kii~~GD~ 155 (205)
T PF02562_consen 148 KIIITGDP 155 (205)
T ss_dssp EEEEEE--
T ss_pred EEEEecCc
Confidence 99998754
No 221
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.34 E-value=0.0029 Score=62.04 Aligned_cols=100 Identities=20% Similarity=0.220 Sum_probs=49.3
Q ss_pred cEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCccHHHHHHHHHhHhCC
Q 038637 228 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSIANDQSNNDDDLNLLQEKLKKQLSG 307 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 307 (962)
..-+.++|+.|+|||.||.++.+.. ..+=-.+.|++ ..+++..+ .... .....+.....+ .
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~--~~~g~~v~f~~------~~~L~~~l----~~~~--~~~~~~~~~~~l----~- 107 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEA--IRKGYSVLFIT------ASDLLDEL----KQSR--SDGSYEELLKRL----K- 107 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHH--HHTT--EEEEE------HHHHHHHH----HCCH--CCTTHCHHHHHH----H-
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHh--ccCCcceeEee------cCceeccc----cccc--cccchhhhcCcc----c-
Confidence 3568999999999999999998742 22222345564 33444443 2221 111222222222 2
Q ss_pred ceEEEEEecCCCCCccchhh--ccCCCCCC-CCCcEEEEEecC
Q 038637 308 NKFLLVLDDVWNKNYNYWSI--LSCPFGAG-APGSKIVVTTRN 347 (962)
Q Consensus 308 kr~LlVlDdv~~~~~~~~~~--l~~~l~~~-~~gs~ilvTtR~ 347 (962)
+-=||||||+-......|.. +...+... ..+ .+||||..
T Consensus 108 ~~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~ 149 (178)
T PF01695_consen 108 RVDLLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNL 149 (178)
T ss_dssp TSSCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS
T ss_pred cccEecccccceeeecccccccchhhhhHhhccc-CeEeeCCC
Confidence 23478899996554444432 11111111 123 57888864
No 222
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.33 E-value=0.016 Score=63.61 Aligned_cols=125 Identities=13% Similarity=0.107 Sum_probs=73.7
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhc-------------------ccceEE
Q 038637 202 EVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQR-------------------HFQFKA 262 (962)
Q Consensus 202 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-------------------~F~~~~ 262 (962)
.++|-+....++..+...... ....+.++|++|+||||+|..+.+...-.. ..+.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~----~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 77 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGR----LPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFL 77 (325)
T ss_pred CcccchhHHHHHHHHHHhcCC----CCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceE
Confidence 467788888888888864431 223599999999999999988887421000 112333
Q ss_pred EEEeCCCCC---HHHHHHHHHHHhccCCCCCCccHHHHHHHHHhHhCCceEEEEEecCCCCCccchhhccCCCCCCCCCc
Q 038637 263 WACVSEDFD---VFRVTKSILKSIANDQSNNDDDLNLLQEKLKKQLSGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGS 339 (962)
Q Consensus 263 wv~v~~~~~---~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs 339 (962)
.+..+.... ..+..+++.+....... .++.-++++|++...+.+.-..+...+......+
T Consensus 78 el~~s~~~~~~i~~~~vr~~~~~~~~~~~-----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~ 140 (325)
T COG0470 78 ELNPSDLRKIDIIVEQVRELAEFLSESPL-----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNT 140 (325)
T ss_pred EecccccCCCcchHHHHHHHHHHhccCCC-----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCe
Confidence 343333332 22333333333322110 3567789999996655444455555555555677
Q ss_pred EEEEEecC
Q 038637 340 KIVVTTRN 347 (962)
Q Consensus 340 ~ilvTtR~ 347 (962)
.+|++|..
T Consensus 141 ~~il~~n~ 148 (325)
T COG0470 141 RFILITND 148 (325)
T ss_pred EEEEEcCC
Confidence 88887774
No 223
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.31 E-value=0.0068 Score=59.74 Aligned_cols=36 Identities=33% Similarity=0.530 Sum_probs=28.4
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEE
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWA 264 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv 264 (962)
...+|.++|+.|+||||+|+.+++ +....+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~--~l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYE--RLKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHH--HHHHcCCcEEEE
Confidence 456999999999999999999987 444455555555
No 224
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.31 E-value=0.022 Score=58.74 Aligned_cols=89 Identities=19% Similarity=0.084 Sum_probs=54.6
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhccc------ceEEEEEeCCCCCHHHHHHHHHHHhccCCC--------CCCc
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHF------QFKAWACVSEDFDVFRVTKSILKSIANDQS--------NNDD 292 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F------~~~~wv~v~~~~~~~~~~~~il~~l~~~~~--------~~~~ 292 (962)
.-.++.|+|++|+|||+||.+++... ...- ..++|++....++...+. .+.+....... ....
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~--~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEA--QLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHh--hcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCC
Confidence 56899999999999999999887632 1222 457899988877765543 33333222110 0123
Q ss_pred cHHHHHHHHHhHhC----CceEEEEEecCC
Q 038637 293 DLNLLQEKLKKQLS----GNKFLLVLDDVW 318 (962)
Q Consensus 293 ~~~~~~~~l~~~l~----~kr~LlVlDdv~ 318 (962)
+.+++...+.+..+ .+.-+||+|.+.
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 44555555554432 344588999883
No 225
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.30 E-value=0.013 Score=66.30 Aligned_cols=188 Identities=18% Similarity=0.192 Sum_probs=106.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchh--cccceEEEEEeCCCCCHHHHHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQ--RHFQFKAWACVSEDFDVFRVTKS 278 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--~~F~~~~wv~v~~~~~~~~~~~~ 278 (962)
+++||.+.-...|...+.... -...-...|+.|+||||+|+-++...--. .+.+ .+.+.. .-+.
T Consensus 16 ~evvGQe~v~~~L~nal~~~r-----i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~e-----PC~~C~----~Ck~ 81 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGR-----IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAE-----PCGKCI----SCKE 81 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCc-----chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCC-----cchhhh----hhHh
Confidence 457999999999999996653 23455678999999999998886521100 1111 111111 1111
Q ss_pred HHHH-----hccCC--CCCCccHHHHHHHHHhHh-CCceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEEEecC-hh
Q 038637 279 ILKS-----IANDQ--SNNDDDLNLLQEKLKKQL-SGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVVTTRN-LD 349 (962)
Q Consensus 279 il~~-----l~~~~--~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~ 349 (962)
|-.. +..+. ...-++..++.+.+.-.- ++|-=+.|+|.|+--+...|..+..-+...-.....|+.|.+ ..
T Consensus 82 I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~K 161 (515)
T COG2812 82 INEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQK 161 (515)
T ss_pred hhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCc
Confidence 1111 00000 002222333333332211 344448899999776777788877766654455555555554 33
Q ss_pred hH-hhhCCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChH
Q 038637 350 VA-NLTRAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPL 406 (962)
Q Consensus 350 v~-~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPL 406 (962)
+. ...+-.+.|.++.++.++-...+...+-. + .-...++....|++..+|..-
T Consensus 162 ip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~-E---~I~~e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 162 IPNTILSRCQRFDFKRLDLEEIAKHLAAILDK-E---GINIEEDALSLIARAAEGSLR 215 (515)
T ss_pred CchhhhhccccccccCCCHHHHHHHHHHHHHh-c---CCccCHHHHHHHHHHcCCChh
Confidence 32 22334567999999999888887765522 1 122335666777777777554
No 226
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.28 E-value=0.024 Score=61.47 Aligned_cols=88 Identities=15% Similarity=0.084 Sum_probs=47.6
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCC--HHHHHHHHHHHhccCCCCCCccHHHHHHHHHhH
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFD--VFRVTKSILKSIANDQSNNDDDLNLLQEKLKKQ 304 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~--~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~ 304 (962)
+.++|+++|++|+||||++..++... ...=..+..++.. .+. ..+-++...+.++.+.. ...+...+.+.+...
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L--~~~GkkVglI~aD-t~RiaAvEQLk~yae~lgipv~-v~~d~~~L~~aL~~l 315 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQF--HGKKKTVGFITTD-HSRIGTVQQLQDYVKTIGFEVI-AVRDEAAMTRALTYF 315 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHH--HHcCCcEEEEecC-CcchHHHHHHHHHhhhcCCcEE-ecCCHHHHHHHHHHH
Confidence 45899999999999999999887632 2221223344432 232 22223333334433322 233455566555544
Q ss_pred hCC-ceEEEEEecCC
Q 038637 305 LSG-NKFLLVLDDVW 318 (962)
Q Consensus 305 l~~-kr~LlVlDdv~ 318 (962)
-.. +.=+|++|-.-
T Consensus 316 k~~~~~DvVLIDTaG 330 (436)
T PRK11889 316 KEEARVDYILIDTAG 330 (436)
T ss_pred HhccCCCEEEEeCcc
Confidence 322 23367777763
No 227
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.28 E-value=0.0079 Score=64.25 Aligned_cols=85 Identities=25% Similarity=0.203 Sum_probs=55.2
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHhccCCC----CCCccHHHHHHHH
Q 038637 226 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSIANDQS----NNDDDLNLLQEKL 301 (962)
Q Consensus 226 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~----~~~~~~~~~~~~l 301 (962)
+.-+++-|+|++|+||||||.+++.. ....-..++|++....++.. .+++++.+.. ....+.++....+
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~--~~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~ 125 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAE--AQKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIA 125 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHH
Confidence 35689999999999999999988763 23334567899887777653 2344433211 0223445555555
Q ss_pred HhHhC-CceEEEEEecC
Q 038637 302 KKQLS-GNKFLLVLDDV 317 (962)
Q Consensus 302 ~~~l~-~kr~LlVlDdv 317 (962)
...++ +.--+||+|-|
T Consensus 126 ~~li~s~~~~lIVIDSv 142 (325)
T cd00983 126 DSLVRSGAVDLIVVDSV 142 (325)
T ss_pred HHHHhccCCCEEEEcch
Confidence 55443 45568999997
No 228
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.27 E-value=0.0028 Score=58.07 Aligned_cols=22 Identities=45% Similarity=0.573 Sum_probs=20.3
Q ss_pred EEEEEcCCCchHHHHHHHHhCc
Q 038637 230 VISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 230 vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
+|.|+|++|+||||+|+.+.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999873
No 229
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.26 E-value=0.0014 Score=61.86 Aligned_cols=42 Identities=26% Similarity=0.160 Sum_probs=29.5
Q ss_pred EEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHH
Q 038637 231 ISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTK 277 (962)
Q Consensus 231 i~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 277 (962)
|.++|++|+|||+||+.++.. ... ...-+.++...+..++..
T Consensus 2 vlL~G~~G~GKt~l~~~la~~--~~~---~~~~i~~~~~~~~~dl~g 43 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAAL--LGR---PVIRINCSSDTTEEDLIG 43 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHH--HTC---EEEEEE-TTTSTHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHH--hhc---ceEEEEecccccccccee
Confidence 679999999999999999873 211 223466777777766643
No 230
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.25 E-value=0.0063 Score=58.51 Aligned_cols=79 Identities=24% Similarity=0.341 Sum_probs=50.0
Q ss_pred cccEEEeCCCcCcccccccccCCCcCCeEeccCCCCcccccccc-ccccCcEEeeCCCccccccch--hcccCCCccEEe
Q 038637 616 RLRVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESIN-SLYNLHTILLENCWELKKLCK--DMGNLTKLRHLR 692 (962)
Q Consensus 616 ~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~-~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~ 692 (962)
....+||++| .+..++. +..+..|..|.|.+|+|+.+-+.+. .+++|++|.|.+| .+.++-. .+..+++|++|.
T Consensus 43 ~~d~iDLtdN-dl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 43 QFDAIDLTDN-DLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred ccceeccccc-chhhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceee
Confidence 4556777777 4555543 6667777777777777776666555 3556777777777 4444321 245666777777
Q ss_pred cCCCC
Q 038637 693 NSDAG 697 (962)
Q Consensus 693 l~~~~ 697 (962)
+-+|+
T Consensus 120 ll~Np 124 (233)
T KOG1644|consen 120 LLGNP 124 (233)
T ss_pred ecCCc
Confidence 66665
No 231
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.25 E-value=0.0089 Score=63.83 Aligned_cols=86 Identities=23% Similarity=0.203 Sum_probs=55.2
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHhccCCCC----CCccHHHHHHHH
Q 038637 226 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSIANDQSN----NDDDLNLLQEKL 301 (962)
Q Consensus 226 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~~~~~l 301 (962)
+.-+++-|+|++|+||||||.++... ....-..++|++..+.++.. .+++++.+... .....++....+
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~--~~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~ 125 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIA 125 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 36689999999999999999887763 23334567799887766653 24444432110 223445555555
Q ss_pred HhHhC-CceEEEEEecCC
Q 038637 302 KKQLS-GNKFLLVLDDVW 318 (962)
Q Consensus 302 ~~~l~-~kr~LlVlDdv~ 318 (962)
...++ +..-+||+|.+-
T Consensus 126 ~~li~~~~~~lIVIDSv~ 143 (321)
T TIGR02012 126 ETLVRSGAVDIIVVDSVA 143 (321)
T ss_pred HHHhhccCCcEEEEcchh
Confidence 55443 456689999983
No 232
>PRK06696 uridine kinase; Validated
Probab=96.21 E-value=0.0056 Score=62.92 Aligned_cols=44 Identities=25% Similarity=0.311 Sum_probs=36.0
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 205 GREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 205 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
.|++-+++|.+.+.... .+...+|+|.|.+|+||||||+.+...
T Consensus 2 ~~~~~~~~la~~~~~~~---~~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 2 SRKQLIKELAEHILTLN---LTRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred cHHHHHHHHHHHHHHhC---CCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 46777888888887543 246789999999999999999999873
No 233
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.20 E-value=0.0032 Score=70.99 Aligned_cols=49 Identities=27% Similarity=0.391 Sum_probs=39.9
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhC
Q 038637 202 EVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 202 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
+++|.++.+++|++.|..........-+++.++|++|+||||||+.+.+
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~ 125 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKS 125 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHH
Confidence 5899999999999999432211233568999999999999999999987
No 234
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.20 E-value=0.017 Score=65.88 Aligned_cols=181 Identities=13% Similarity=0.057 Sum_probs=88.8
Q ss_pred CccccchhhHHHHHHHHhcC----CCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHH
Q 038637 201 AEVYGREKEEEEIVELLLND----GLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVT 276 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~----~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~ 276 (962)
+++-|.+..++.+.+....- ...+-...+-|.++|++|.|||.+|+.+++. ....| +-++++. +
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e--~~~~~---~~l~~~~------l- 295 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIAND--WQLPL---LRLDVGK------L- 295 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEEhHH------h-
Confidence 45778777666665432110 0001124567889999999999999999884 22222 1122111 1
Q ss_pred HHHHHHhccCCCCCCccHHHHHHHHHhHhCCceEEEEEecCCCCCc--cc----------hhhccCCCCCCCCCcEEEEE
Q 038637 277 KSILKSIANDQSNNDDDLNLLQEKLKKQLSGNKFLLVLDDVWNKNY--NY----------WSILSCPFGAGAPGSKIVVT 344 (962)
Q Consensus 277 ~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--~~----------~~~l~~~l~~~~~gs~ilvT 344 (962)
.... .......+.+.+...-...+++|++|++..--. .. ...+...+.....+.-||.|
T Consensus 296 ---~~~~------vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaT 366 (489)
T CHL00195 296 ---FGGI------VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVAT 366 (489)
T ss_pred ---cccc------cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 0000 011112222233322235789999999842100 00 01111112222234456667
Q ss_pred ecChh-hHhh----hCCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCCh
Q 038637 345 TRNLD-VANL----TRAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLP 405 (962)
Q Consensus 345 tR~~~-v~~~----~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glP 405 (962)
|.... +-.. ..-...+.++..+.++-.++|..+.-.... ... .......+++.+.|+-
T Consensus 367 TN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~-~~~--~~~dl~~La~~T~GfS 429 (489)
T CHL00195 367 ANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRP-KSW--KKYDIKKLSKLSNKFS 429 (489)
T ss_pred cCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCC-Ccc--cccCHHHHHhhcCCCC
Confidence 76543 2111 123346778888889988998877533211 000 0112455666666653
No 235
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.18 E-value=0.025 Score=57.93 Aligned_cols=43 Identities=19% Similarity=0.085 Sum_probs=32.1
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCC
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFD 271 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~ 271 (962)
.-.++.|.|.+|+||||+|.+++.. ....-..++|++....++
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~--~~~~g~~v~yi~~e~~~~ 60 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVE--TAGQGKKVAYIDTEGLSS 60 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCCCCH
Confidence 5689999999999999999998763 222334567887665554
No 236
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.16 E-value=0.029 Score=57.77 Aligned_cols=83 Identities=20% Similarity=0.229 Sum_probs=47.9
Q ss_pred cEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCccHHHHHHHHHhHhCC
Q 038637 228 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSIANDQSNNDDDLNLLQEKLKKQLSG 307 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 307 (962)
...+.++|.+|+|||+||.++++.. ...-..+++++ ..+++..+-..... .....+. +.+.+.
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l--~~~g~~v~~it------~~~l~~~l~~~~~~----~~~~~~~----~l~~l~- 161 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNEL--LLRGKSVLIIT------VADIMSAMKDTFSN----SETSEEQ----LLNDLS- 161 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEE------HHHHHHHHHHHHhh----ccccHHH----HHHHhc-
Confidence 4578999999999999999999843 22223445553 34444444333321 1112222 222344
Q ss_pred ceEEEEEecCCCCCccchhh
Q 038637 308 NKFLLVLDDVWNKNYNYWSI 327 (962)
Q Consensus 308 kr~LlVlDdv~~~~~~~~~~ 327 (962)
+.=+||+||+......+|+.
T Consensus 162 ~~dlLvIDDig~~~~s~~~~ 181 (244)
T PRK07952 162 NVDLLVIDEIGVQTESRYEK 181 (244)
T ss_pred cCCEEEEeCCCCCCCCHHHH
Confidence 33488889996655455553
No 237
>PRK04296 thymidine kinase; Provisional
Probab=96.15 E-value=0.0071 Score=60.22 Aligned_cols=114 Identities=11% Similarity=-0.048 Sum_probs=61.2
Q ss_pred EEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHhccCCCC-CCccHHHHHHHHHhHhCC
Q 038637 229 SVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSIANDQSN-NDDDLNLLQEKLKKQLSG 307 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~l~~~l~~ 307 (962)
.++.|+|+.|.||||+|..+... ...+-..++.+. ..++.+.....++.+++..... ......++...+.+ ..+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~--~~~~g~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~ 77 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYN--YEERGMKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGE 77 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHH--HHHcCCeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCC
Confidence 57889999999999999888763 323322333331 2222222233455555432221 12233445555554 333
Q ss_pred ceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEEEecChh
Q 038637 308 NKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVVTTRNLD 349 (962)
Q Consensus 308 kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~ 349 (962)
+.-+||+|.+.--+.++...+...+ ...|..||+|.+..+
T Consensus 78 ~~dvviIDEaq~l~~~~v~~l~~~l--~~~g~~vi~tgl~~~ 117 (190)
T PRK04296 78 KIDCVLIDEAQFLDKEQVVQLAEVL--DDLGIPVICYGLDTD 117 (190)
T ss_pred CCCEEEEEccccCCHHHHHHHHHHH--HHcCCeEEEEecCcc
Confidence 4458999999432222122222221 236788999998743
No 238
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.15 E-value=0.016 Score=71.61 Aligned_cols=124 Identities=14% Similarity=0.178 Sum_probs=68.2
Q ss_pred CccccchhhHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGL---RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTK 277 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 277 (962)
..++|.+..++.|.+.+..... ..+....++.++|+.|+|||+||+.++.. .-..-...+-++.++-.+...+.+
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~--l~~~~~~~~~~d~s~~~~~~~~~~ 586 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASY--FFGSEDAMIRLDMSEYMEKHTVSK 586 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHH--hcCCccceEEEEchhccccccHHH
Confidence 4689999999999888853211 01223456778999999999999998762 111112233444443222211111
Q ss_pred HHHHHhccCCC-CCCccHHHHHHHHHhHhCCce-EEEEEecCCCCCccchhhccCCCCC
Q 038637 278 SILKSIANDQS-NNDDDLNLLQEKLKKQLSGNK-FLLVLDDVWNKNYNYWSILSCPFGA 334 (962)
Q Consensus 278 ~il~~l~~~~~-~~~~~~~~~~~~l~~~l~~kr-~LlVlDdv~~~~~~~~~~l~~~l~~ 334 (962)
-++.+.. ........+.+. ++.++ -+++||++...+...+..+...+..
T Consensus 587 ----l~g~~~gyvg~~~~~~l~~~----~~~~p~~VvllDeieka~~~v~~~Llq~le~ 637 (821)
T CHL00095 587 ----LIGSPPGYVGYNEGGQLTEA----VRKKPYTVVLFDEIEKAHPDIFNLLLQILDD 637 (821)
T ss_pred ----hcCCCCcccCcCccchHHHH----HHhCCCeEEEECChhhCCHHHHHHHHHHhcc
Confidence 1221111 011122233333 33344 5889999976666666666655543
No 239
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.14 E-value=0.033 Score=55.14 Aligned_cols=121 Identities=21% Similarity=0.258 Sum_probs=70.7
Q ss_pred cCCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHH
Q 038637 199 NEAEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKS 278 (962)
Q Consensus 199 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~ 278 (962)
+-..++|.|..++.|++--..-.. .....-|.++|..|.|||.|++++.+. .....-. -|.|.+.
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F~~--G~pANnVLLwGaRGtGKSSLVKA~~~e--~~~~glr--LVEV~k~--------- 122 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQFAE--GLPANNVLLWGARGTGKSSLVKALLNE--YADEGLR--LVEVDKE--------- 122 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHHHc--CCcccceEEecCCCCChHHHHHHHHHH--HHhcCCe--EEEEcHH---------
Confidence 345689999999888765432111 123456789999999999999999883 3333222 2222211
Q ss_pred HHHHhccCCCCCCccHHHHHHHHHhHhCCceEEEEEecCCCC-CccchhhccCCCCCC---CCCcEEEEEecC
Q 038637 279 ILKSIANDQSNNDDDLNLLQEKLKKQLSGNKFLLVLDDVWNK-NYNYWSILSCPFGAG---APGSKIVVTTRN 347 (962)
Q Consensus 279 il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~---~~gs~ilvTtR~ 347 (962)
+..++..+.+.|+. ..+||.|+.||+.-+ ....+..++..+..+ .+.-.++..|.+
T Consensus 123 -----------dl~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 123 -----------DLATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred -----------HHhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 11222233333332 468999999999543 335566677666533 233344444544
No 240
>PRK09354 recA recombinase A; Provisional
Probab=96.12 E-value=0.012 Score=63.28 Aligned_cols=86 Identities=24% Similarity=0.203 Sum_probs=56.6
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHhccCCCC----CCccHHHHHHHH
Q 038637 226 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSIANDQSN----NDDDLNLLQEKL 301 (962)
Q Consensus 226 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~~~~~l 301 (962)
+.-+++-|+|++|+||||||.+++.. ....-..++|++....++.. .+++++.+... .....++....+
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~--~~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~ 130 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAE--AQKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIA 130 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHH
Confidence 35689999999999999999988763 33334567899888877753 34444432210 223455555555
Q ss_pred HhHhC-CceEEEEEecCC
Q 038637 302 KKQLS-GNKFLLVLDDVW 318 (962)
Q Consensus 302 ~~~l~-~kr~LlVlDdv~ 318 (962)
...++ +.--+||+|-|-
T Consensus 131 ~~li~s~~~~lIVIDSva 148 (349)
T PRK09354 131 DTLVRSGAVDLIVVDSVA 148 (349)
T ss_pred HHHhhcCCCCEEEEeChh
Confidence 55543 455689999983
No 241
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.12 E-value=0.016 Score=67.40 Aligned_cols=44 Identities=32% Similarity=0.407 Sum_probs=35.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhC
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
.+++|.+..++.+...+... ....|.|+|++|+|||++|+.+++
T Consensus 65 ~~iiGqs~~i~~l~~al~~~------~~~~vLi~Ge~GtGKt~lAr~i~~ 108 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGP------NPQHVIIYGPPGVGKTAAARLVLE 108 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHH
Confidence 35899999999998876433 234568999999999999999975
No 242
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.10 E-value=0.02 Score=57.03 Aligned_cols=57 Identities=19% Similarity=0.142 Sum_probs=37.0
Q ss_pred cEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCC-CCCHHHHHHHHHHHhccC
Q 038637 228 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSE-DFDVFRVTKSILKSIAND 286 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~-~~~~~~~~~~il~~l~~~ 286 (962)
++||.++|+.|+||||.+-+++.....+ =..+..++... .....+-++...+.++.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp 58 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK--GKKVALISADTYRIGAVEQLKTYAEILGVP 58 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT--T--EEEEEESTSSTHHHHHHHHHHHHHTEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc--cccceeecCCCCCccHHHHHHHHHHHhccc
Confidence 4799999999999999887776643322 23345565532 234556667777777754
No 243
>PRK04132 replication factor C small subunit; Provisional
Probab=96.06 E-value=0.072 Score=64.33 Aligned_cols=154 Identities=11% Similarity=0.038 Sum_probs=93.2
Q ss_pred CCCchHHHHHHHHhCccchhcccc-eEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCccHHHHHHHHHhHhCCceEEEEE
Q 038637 236 MGGVGKTTLAQLVYNDDRVQRHFQ-FKAWACVSEDFDVFRVTKSILKSIANDQSNNDDDLNLLQEKLKKQLSGNKFLLVL 314 (962)
Q Consensus 236 ~~GiGKTtLa~~v~~~~~~~~~F~-~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVl 314 (962)
|.++||||+|..++++.- ...++ ..+-+++++..... ..++++..+..... . -..+.-++|+
T Consensus 574 Ph~lGKTT~A~ala~~l~-g~~~~~~~lElNASd~rgid-~IR~iIk~~a~~~~-~--------------~~~~~KVvII 636 (846)
T PRK04132 574 PTVLHNTTAALALARELF-GENWRHNFLELNASDERGIN-VIREKVKEFARTKP-I--------------GGASFKIIFL 636 (846)
T ss_pred CCcccHHHHHHHHHHhhh-cccccCeEEEEeCCCcccHH-HHHHHHHHHHhcCC-c--------------CCCCCEEEEE
Confidence 779999999999998421 12222 24556666544443 33444444322111 0 0124579999
Q ss_pred ecCCCCCccchhhccCCCCCCCCCcEEEEEecC-hhhHhh-hCCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHH
Q 038637 315 DDVWNKNYNYWSILSCPFGAGAPGSKIVVTTRN-LDVANL-TRAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKD 392 (962)
Q Consensus 315 Ddv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~ 392 (962)
|++...+......+...+......+++|++|.+ ..+... ..-...+.+.+++.++....+...+... +.. ...+
T Consensus 637 DEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~E-gi~---i~~e 712 (846)
T PRK04132 637 DEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENE-GLE---LTEE 712 (846)
T ss_pred ECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhc-CCC---CCHH
Confidence 999777666666776666554456666666555 333222 2234679999999999888877654321 111 1256
Q ss_pred HHHHHHHhcCCChHHHHH
Q 038637 393 VGEKIAKKCKGLPLAAKT 410 (962)
Q Consensus 393 ~~~~I~~~c~glPLai~~ 410 (962)
....|++.++|.+-.+..
T Consensus 713 ~L~~Ia~~s~GDlR~AIn 730 (846)
T PRK04132 713 GLQAILYIAEGDMRRAIN 730 (846)
T ss_pred HHHHHHHHcCCCHHHHHH
Confidence 788999999998854433
No 244
>PHA00729 NTP-binding motif containing protein
Probab=96.03 E-value=0.025 Score=56.91 Aligned_cols=24 Identities=46% Similarity=0.494 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhC
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
+...|.|+|.+|+||||||..+.+
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~ 39 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVAR 39 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999999999987
No 245
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.03 E-value=0.0096 Score=57.69 Aligned_cols=45 Identities=22% Similarity=0.294 Sum_probs=32.8
Q ss_pred cccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 203 VYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 203 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
+||....+.++++.+..... .. .-|.|+|..|+||+.+|+.+++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~---~~-~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS---SD-LPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT---ST-S-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhC---CC-CCEEEEcCCCCcHHHHHHHHHHh
Confidence 46888888888887765432 23 44569999999999999999883
No 246
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.02 E-value=0.067 Score=57.95 Aligned_cols=71 Identities=13% Similarity=0.101 Sum_probs=42.3
Q ss_pred CceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEEEecCh-hhHhhh-CCCCcccCCCCCHHHHHHHHHHh
Q 038637 307 GNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVVTTRNL-DVANLT-RAYPKYGLKELSDDDCLRVVIQH 377 (962)
Q Consensus 307 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~ 377 (962)
+++-++|+|++..-+...-..+...+.....+..+|++|.+. .+...+ .-...+.+.+++.++..+.+...
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 344455668886655444444444443333456666677664 333322 23357889999999999888653
No 247
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.01 E-value=0.028 Score=61.20 Aligned_cols=57 Identities=14% Similarity=0.176 Sum_probs=40.9
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhcc----cceEEEEEeCCCCCHHHHHHHHHHHhc
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQRH----FQFKAWACVSEDFDVFRVTKSILKSIA 284 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----F~~~~wv~v~~~~~~~~~~~~il~~l~ 284 (962)
...++-|+|++|+|||++|.+++........ =..++|++....|+..++.+ +++.++
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~-~~~~~g 161 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQ-MAEALG 161 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHH-HHHHcC
Confidence 5689999999999999999988754221111 13688999999888877653 344443
No 248
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.98 E-value=0.021 Score=61.44 Aligned_cols=58 Identities=17% Similarity=0.149 Sum_probs=42.0
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchh----cccceEEEEEeCCCCCHHHHHHHHHHHhcc
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQ----RHFQFKAWACVSEDFDVFRVTKSILKSIAN 285 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~F~~~~wv~v~~~~~~~~~~~~il~~l~~ 285 (962)
.-+++-|+|++|+|||+|+.+++-..... ..=..++|++....|++.++.+ +++.++.
T Consensus 95 ~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~-~a~~~g~ 156 (313)
T TIGR02238 95 SMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRA-IAERFGV 156 (313)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHH-HHHHcCC
Confidence 56899999999999999998776422211 1123678999999998888754 5666554
No 249
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=95.98 E-value=0.023 Score=59.09 Aligned_cols=88 Identities=22% Similarity=0.268 Sum_probs=52.8
Q ss_pred cEEEEEEcCCCchHHHHHHHHhCccchhcccc-eEEEEEeCCCCC-HHHHHHHHHHHhccCC------CCCCccHH----
Q 038637 228 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFQ-FKAWACVSEDFD-VFRVTKSILKSIANDQ------SNNDDDLN---- 295 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~-~~~wv~v~~~~~-~~~~~~~il~~l~~~~------~~~~~~~~---- 295 (962)
-.-++|+|.+|+||||||+.+++. ++.+|+ ..+++-+++... ..++.+++...=..+. ..+.....
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~--i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINN--IAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHH--HHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 356799999999999999999984 444454 455677777653 4455555544211110 00111111
Q ss_pred -HHHHHHHhHh---CCceEEEEEecC
Q 038637 296 -LLQEKLKKQL---SGNKFLLVLDDV 317 (962)
Q Consensus 296 -~~~~~l~~~l---~~kr~LlVlDdv 317 (962)
...-.+.+++ +++.+|+++||+
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCh
Confidence 1122334444 389999999998
No 250
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.92 E-value=0.022 Score=61.62 Aligned_cols=59 Identities=19% Similarity=0.103 Sum_probs=42.8
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccch----hcccceEEEEEeCCCCCHHHHHHHHHHHhccC
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRV----QRHFQFKAWACVSEDFDVFRVTKSILKSIAND 286 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~----~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~ 286 (962)
.-+++-|+|++|+|||+|+..++-.... .+.-..++|++....|++.++.. +++.++.+
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d 187 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMD 187 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 5689999999999999999887642221 11124678999999999888754 55665543
No 251
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.91 E-value=0.0035 Score=37.47 Aligned_cols=19 Identities=32% Similarity=0.558 Sum_probs=9.9
Q ss_pred CCeEeccCCCCcccccccc
Q 038637 641 LRCLNLSRTRIQILPESIN 659 (962)
Q Consensus 641 Lr~L~Ls~~~i~~lp~~i~ 659 (962)
|++|+|++|.++.+|++|+
T Consensus 2 L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp ESEEEETSSEESEEGTTTT
T ss_pred ccEEECCCCcCEeCChhhc
Confidence 4555555555555555443
No 252
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.90 E-value=0.028 Score=59.75 Aligned_cols=87 Identities=21% Similarity=0.134 Sum_probs=46.7
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchh-cccceEEEEEeCCCC-CHHHHHHHHHHHhccCCCCCCccHHHHHHHHHhH
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQ-RHFQFKAWACVSEDF-DVFRVTKSILKSIANDQSNNDDDLNLLQEKLKKQ 304 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~F~~~~wv~v~~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~ 304 (962)
..+++.|+|+.|+||||++..++...... +.+ .+..++..... ...+.+....+.++.+.. ...+...+.+.+...
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~-~V~li~~D~~r~~a~eql~~~~~~~~~p~~-~~~~~~~l~~~l~~~ 270 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNK-KVALITTDTYRIGAVEQLKTYAKILGVPVK-VARDPKELRKALDRL 270 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCC-eEEEEECCccchhHHHHHHHHHHHhCCcee-ccCCHHHHHHHHHHc
Confidence 46799999999999999998887643222 112 34455543211 122233333333333322 233444555555543
Q ss_pred hCCceEEEEEecC
Q 038637 305 LSGNKFLLVLDDV 317 (962)
Q Consensus 305 l~~kr~LlVlDdv 317 (962)
.+ .=+|++|..
T Consensus 271 -~~-~d~vliDt~ 281 (282)
T TIGR03499 271 -RD-KDLILIDTA 281 (282)
T ss_pred -cC-CCEEEEeCC
Confidence 33 346777753
No 253
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.89 E-value=0.037 Score=57.80 Aligned_cols=89 Identities=24% Similarity=0.203 Sum_probs=57.6
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHH-hc---cCCCCCCccHHHHHHHH
Q 038637 226 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKS-IA---NDQSNNDDDLNLLQEKL 301 (962)
Q Consensus 226 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~-l~---~~~~~~~~~~~~~~~~l 301 (962)
+.-+++-|+|+.|.||||+|.+++-. .+..-..++|++.-..+++..+.. +... +. ...+....+..++++.+
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~--aq~~g~~a~fIDtE~~l~p~r~~~-l~~~~~d~l~v~~~~~~e~q~~i~~~~ 134 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVAN--AQKPGGKAAFIDTEHALDPERAKQ-LGVDLLDNLLVSQPDTGEQQLEIAEKL 134 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHH--hhcCCCeEEEEeCCCCCCHHHHHH-HHHhhhcceeEecCCCHHHHHHHHHHH
Confidence 46799999999999999999887763 334444789999999998876643 3333 22 11111222233344444
Q ss_pred HhHhCCceEEEEEecC
Q 038637 302 KKQLSGNKFLLVLDDV 317 (962)
Q Consensus 302 ~~~l~~kr~LlVlDdv 317 (962)
......+--|+|+|.+
T Consensus 135 ~~~~~~~i~LvVVDSv 150 (279)
T COG0468 135 ARSGAEKIDLLVVDSV 150 (279)
T ss_pred HHhccCCCCEEEEecC
Confidence 4444444569999988
No 254
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=95.85 E-value=0.22 Score=54.67 Aligned_cols=42 Identities=21% Similarity=0.373 Sum_probs=32.9
Q ss_pred hhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 207 EKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 207 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
+.-.+.|.+.+.... .....+|+|.|.=|+||||+.+.+...
T Consensus 2 ~~~a~~la~~I~~~~---~~~~~~IgL~G~WGsGKSs~l~~l~~~ 43 (325)
T PF07693_consen 2 KPYAKALAEIIKNPD---SDDPFVIGLYGEWGSGKSSFLNMLKEE 43 (325)
T ss_pred hHHHHHHHHHHhccC---CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 445567777776543 247789999999999999999998874
No 255
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.81 E-value=0.034 Score=59.99 Aligned_cols=58 Identities=17% Similarity=0.031 Sum_probs=40.4
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhc----ccceEEEEEeCCCCCHHHHHHHHHHHhcc
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQR----HFQFKAWACVSEDFDVFRVTKSILKSIAN 285 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~~~~~il~~l~~ 285 (962)
...++.|+|.+|+|||+|+..++....... .-..++|++....|+..++ .++.+.++.
T Consensus 95 ~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl-~~ia~~~~~ 156 (316)
T TIGR02239 95 TGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERL-LAIAERYGL 156 (316)
T ss_pred CCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHH-HHHHHHcCC
Confidence 578999999999999999988865221111 1135689998888887764 444555443
No 256
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.81 E-value=0.015 Score=68.42 Aligned_cols=120 Identities=16% Similarity=0.243 Sum_probs=72.8
Q ss_pred CccccchhhHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCchHHHHHHHHhCccchhccc---ceEEEEEeCCCCCHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGL---RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHF---QFKAWACVSEDFDVFR 274 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F---~~~~wv~v~~~~~~~~ 274 (962)
..++|.+..++.+.+.+..... ..+....+...+|+.|||||-||++++.. -| +..+-++ +.+
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~-----Lfg~e~aliR~D------MSE 559 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEA-----LFGDEQALIRID------MSE 559 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHH-----hcCCCccceeec------hHH
Confidence 4689999999999998864332 12345678888999999999999988762 23 2333333 333
Q ss_pred HHHH-HHHHhccCCCC--CCccHHHHHHHHHhHhCCceE-EEEEecCCCCCccchhhccCCCCCC
Q 038637 275 VTKS-ILKSIANDQSN--NDDDLNLLQEKLKKQLSGNKF-LLVLDDVWNKNYNYWSILSCPFGAG 335 (962)
Q Consensus 275 ~~~~-il~~l~~~~~~--~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~~~~~~~~~l~~~l~~~ 335 (962)
.... -+..+-+.++. .-.+...+-+. .+.++| +|.||.+.-.+++..+.+...|.++
T Consensus 560 y~EkHsVSrLIGaPPGYVGyeeGG~LTEa----VRr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 560 YMEKHSVSRLIGAPPGYVGYEEGGQLTEA----VRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred HHHHHHHHHHhCCCCCCceeccccchhHh----hhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 3222 12333333321 12223344444 456777 8889999666666666666655543
No 257
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.80 E-value=0.004 Score=58.52 Aligned_cols=107 Identities=15% Similarity=0.088 Sum_probs=58.6
Q ss_pred ccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccch-hcccceEEEEEeCCCCCHHHHHHHHHHH
Q 038637 204 YGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRV-QRHFQFKAWACVSEDFDVFRVTKSILKS 282 (962)
Q Consensus 204 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~F~~~~wv~v~~~~~~~~~~~~il~~ 282 (962)
||.-..++++.+.+..-.. ...-|.|+|..|+||+++|+.++..... ...|... ++..
T Consensus 1 vG~S~~~~~l~~~l~~~a~----~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~---~~~~-------------- 59 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK----SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVI---DCAS-------------- 59 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC----SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCC---CHHC--------------
T ss_pred CCCCHHHHHHHHHHHHHhC----CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEe---chhh--------------
Confidence 4666677777776654321 2345689999999999999988874321 1122210 0000
Q ss_pred hccCCCCCCccHHHHHHHHHhHhCCceEEEEEecCCCCCccchhhccCCCCC-CCCCcEEEEEecC
Q 038637 283 IANDQSNNDDDLNLLQEKLKKQLSGNKFLLVLDDVWNKNYNYWSILSCPFGA-GAPGSKIVVTTRN 347 (962)
Q Consensus 283 l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs~ilvTtR~ 347 (962)
.+ .+.+.. .+.--++++|+..-+......+...+.. .....|+|.||+.
T Consensus 60 ---------~~----~~~l~~---a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~ 109 (138)
T PF14532_consen 60 ---------LP----AELLEQ---AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQ 109 (138)
T ss_dssp ---------TC----HHHHHH---CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC
T ss_pred ---------Cc----HHHHHH---cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 00 111111 1344577888866554455555544442 2467799999875
No 258
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.78 E-value=0.031 Score=68.40 Aligned_cols=180 Identities=16% Similarity=0.127 Sum_probs=91.6
Q ss_pred CccccchhhHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGL-------RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVF 273 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 273 (962)
+++.|.+..+++|.+++..... -+-...+-|.++|++|+|||+||+.+++. ....| +.++.+
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~--~~~~~---i~i~~~------ 246 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE--AGAYF---ISINGP------ 246 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH--hCCeE---EEEecH------
Confidence 4588999999999887743210 00123466889999999999999999873 22222 222211
Q ss_pred HHHHHHHHHhccCCCCCCccHHHHHHHHHhHhCCceEEEEEecCCCCCc-----------cchhhccCCCCCC-CCCcEE
Q 038637 274 RVTKSILKSIANDQSNNDDDLNLLQEKLKKQLSGNKFLLVLDDVWNKNY-----------NYWSILSCPFGAG-APGSKI 341 (962)
Q Consensus 274 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-----------~~~~~l~~~l~~~-~~gs~i 341 (962)
++ .... .......+...+.........+|++|++..-.. .....+...+... ..+..+
T Consensus 247 ~i----~~~~------~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vi 316 (733)
T TIGR01243 247 EI----MSKY------YGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVI 316 (733)
T ss_pred HH----hccc------ccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEE
Confidence 11 0000 111122233333344455678999999833110 0111222222211 123344
Q ss_pred EE-EecChh-hHhhhC----CCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChH
Q 038637 342 VV-TTRNLD-VANLTR----AYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPL 406 (962)
Q Consensus 342 lv-TtR~~~-v~~~~~----~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPL 406 (962)
|| ||.... +..... -...+.+...+.++-.+++..+.-.. .... ......+++.+.|.--
T Consensus 317 vI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~-~l~~----d~~l~~la~~t~G~~g 382 (733)
T TIGR01243 317 VIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNM-PLAE----DVDLDKLAEVTHGFVG 382 (733)
T ss_pred EEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCC-CCcc----ccCHHHHHHhCCCCCH
Confidence 44 554322 222111 12356777778888888887543211 1011 1225667888887653
No 259
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.74 E-value=0.03 Score=62.65 Aligned_cols=97 Identities=19% Similarity=0.288 Sum_probs=61.7
Q ss_pred CccccchhhHHHHHHHHhcCCCC------CCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGLR------ADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFR 274 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 274 (962)
.++=|.++.+.++.+++.....+ +-...+=|.++|++|.|||.||+++++.. .-.| +.++..
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel--~vPf-----~~isAp----- 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL--GVPF-----LSISAP----- 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc--CCce-----Eeecch-----
Confidence 45668999999998888653210 11345678899999999999999999843 3222 333322
Q ss_pred HHHHHHHHhccCCCCCCccHHHHHHHHHhHhCCceEEEEEecCC
Q 038637 275 VTKSILKSIANDQSNNDDDLNLLQEKLKKQLSGNKFLLVLDDVW 318 (962)
Q Consensus 275 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~ 318 (962)
+|+..+. ....+.+.+...+.-..-++++++|++.
T Consensus 258 ---eivSGvS------GESEkkiRelF~~A~~~aPcivFiDeID 292 (802)
T KOG0733|consen 258 ---EIVSGVS------GESEKKIRELFDQAKSNAPCIVFIDEID 292 (802)
T ss_pred ---hhhcccC------cccHHHHHHHHHHHhccCCeEEEeeccc
Confidence 2222222 2233344444445556789999999984
No 260
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.71 E-value=0.045 Score=52.97 Aligned_cols=40 Identities=25% Similarity=0.299 Sum_probs=29.3
Q ss_pred EEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCC
Q 038637 230 VISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFD 271 (962)
Q Consensus 230 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~ 271 (962)
++.|+|++|+||||++..+... ....-..++|++......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~--~~~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALN--IATKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHH--HHhcCCEEEEEECCcchH
Confidence 3689999999999999999873 222334567777766543
No 261
>PRK08233 hypothetical protein; Provisional
Probab=95.70 E-value=0.03 Score=55.48 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCchHHHHHHHHhCc
Q 038637 228 FSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
..+|+|.|.+|+||||||+.++..
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhh
Confidence 479999999999999999999864
No 262
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.70 E-value=0.024 Score=66.87 Aligned_cols=155 Identities=17% Similarity=0.218 Sum_probs=84.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhccc-----ceEEEEEeCCCCCHHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHF-----QFKAWACVSEDFDVFRV 275 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F-----~~~~wv~v~~~~~~~~~ 275 (962)
++++||++|++++++.|..... +-+ .++|.+|+|||++|.-++..- +.+.- +..++. .
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~K----NNP--vLiGEpGVGKTAIvEGLA~rI-v~g~VP~~L~~~~i~s-----L----- 232 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTK----NNP--VLVGEPGVGKTAIVEGLAQRI-VNGDVPESLKDKRIYS-----L----- 232 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCC----CCC--eEecCCCCCHHHHHHHHHHHH-hcCCCCHHHcCCEEEE-----e-----
Confidence 4689999999999999976543 223 368999999999876555420 11111 111111 0
Q ss_pred HHHHHHHhccCCCCCCccHHHHHHHHHhHhC-CceEEEEEecCCCC---------CccchhhccCCCCCCCCCcEEEEEe
Q 038637 276 TKSILKSIANDQSNNDDDLNLLQEKLKKQLS-GNKFLLVLDDVWNK---------NYNYWSILSCPFGAGAPGSKIVVTT 345 (962)
Q Consensus 276 ~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~-~kr~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~ilvTt 345 (962)
++..-+.+.. ...+.++..+.+-+.++ .++..+++|.++.- ..+.-..++.+|. .+.--.|=-||
T Consensus 233 --D~g~LvAGak--yRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLA-RGeL~~IGATT 307 (786)
T COG0542 233 --DLGSLVAGAK--YRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALA-RGELRCIGATT 307 (786)
T ss_pred --cHHHHhcccc--ccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHh-cCCeEEEEecc
Confidence 1111111211 33455555555544443 45899999998541 0111122222222 22223455566
Q ss_pred cChhh------HhhhCCCCcccCCCCCHHHHHHHHHHh
Q 038637 346 RNLDV------ANLTRAYPKYGLKELSDDDCLRVVIQH 377 (962)
Q Consensus 346 R~~~v------~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 377 (962)
-++-- +....-.+.+.+...+.+++..+++-.
T Consensus 308 ~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGl 345 (786)
T COG0542 308 LDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGL 345 (786)
T ss_pred HHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHH
Confidence 55321 111223467889999999999988654
No 263
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.69 E-value=0.01 Score=54.98 Aligned_cols=23 Identities=43% Similarity=0.485 Sum_probs=20.7
Q ss_pred EEEEEEcCCCchHHHHHHHHhCc
Q 038637 229 SVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
--|.|+|++|+||||+++.+.+.
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~ 28 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEK 28 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHH
Confidence 46799999999999999999873
No 264
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.68 E-value=0.021 Score=56.63 Aligned_cols=79 Identities=23% Similarity=0.233 Sum_probs=45.0
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHhccCC-CCCCccHHHHHHHHHhH
Q 038637 226 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSIANDQ-SNNDDDLNLLQEKLKKQ 304 (962)
Q Consensus 226 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~-~~~~~~~~~~~~~l~~~ 304 (962)
.++.+|+|.|.+|+||||+|+.++. ....++... ++-. .+-...-.....+...... ...+.+.+-+.+.|...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~--~~~~~~~~~--I~~D-~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L 80 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSE--QLGVEKVVV--ISLD-DYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDL 80 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHH--HhCcCcceE--eecc-ccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHH
Confidence 3568999999999999999999987 333331111 1111 1100000111111111111 11556778888889888
Q ss_pred hCCce
Q 038637 305 LSGNK 309 (962)
Q Consensus 305 l~~kr 309 (962)
+++++
T Consensus 81 ~~g~~ 85 (218)
T COG0572 81 KQGKP 85 (218)
T ss_pred HcCCc
Confidence 88887
No 265
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.65 E-value=0.032 Score=63.59 Aligned_cols=93 Identities=20% Similarity=0.173 Sum_probs=56.0
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHH
Q 038637 200 EAEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSI 279 (962)
Q Consensus 200 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i 279 (962)
+.+|+--...+++..+...... -....|.|.|+.|+|||+||+++++... +.+.-.+.+|+++.--
T Consensus 407 e~d~i~~~s~kke~~n~~~spv----~~~~~Ill~G~~GsGKT~L~kal~~~~~-k~~~~hv~~v~Cs~l~--------- 472 (952)
T KOG0735|consen 407 EHDFIQVPSYKKENANQELSPV----FRHGNILLNGPKGSGKTNLVKALFDYYS-KDLIAHVEIVSCSTLD--------- 472 (952)
T ss_pred CCceeecchhhhhhhhhhcccc----cccccEEEeCCCCCCHhHHHHHHHHHhc-cccceEEEEEechhcc---------
Confidence 3445444444444444443332 2457789999999999999999998544 4444455567666431
Q ss_pred HHHhccCCCCCCccHHHHHHH----HHhHhCCceEEEEEecC
Q 038637 280 LKSIANDQSNNDDDLNLLQEK----LKKQLSGNKFLLVLDDV 317 (962)
Q Consensus 280 l~~l~~~~~~~~~~~~~~~~~----l~~~l~~kr~LlVlDdv 317 (962)
....+..+.. +.+.+...+-+|||||+
T Consensus 473 -----------~~~~e~iQk~l~~vfse~~~~~PSiIvLDdl 503 (952)
T KOG0735|consen 473 -----------GSSLEKIQKFLNNVFSEALWYAPSIIVLDDL 503 (952)
T ss_pred -----------chhHHHHHHHHHHHHHHHHhhCCcEEEEcch
Confidence 1112222222 33344567889999998
No 266
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.63 E-value=0.00091 Score=67.01 Aligned_cols=60 Identities=28% Similarity=0.384 Sum_probs=35.3
Q ss_pred hCCCCcccEEEeCCCcCcccccccccCCCcCCeEeccCCCCccccc--cccccccCcEEeeCCC
Q 038637 611 LNHLPRLRVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPE--SINSLYNLHTILLENC 672 (962)
Q Consensus 611 l~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~--~i~~L~~L~~L~L~~~ 672 (962)
..+|+.|+||.||-| .+..+. .+..++.|+.|+|+.|.|..+.+ .+.+|++|++|.|..|
T Consensus 37 c~kMp~lEVLsLSvN-kIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 37 CEKMPLLEVLSLSVN-KISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred HHhcccceeEEeecc-ccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence 456666666666666 455552 25566666666666666664433 3445666666655554
No 267
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.61 E-value=0.083 Score=64.66 Aligned_cols=179 Identities=15% Similarity=0.149 Sum_probs=92.2
Q ss_pred CccccchhhHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGL-------RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVF 273 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 273 (962)
.++.|.+..+++|.+.+.-... .+-...+-|.++|++|.|||++|+++++. ....| +.+...
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e--~~~~f-----i~v~~~---- 521 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE--SGANF-----IAVRGP---- 521 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh--cCCCE-----EEEehH----
Confidence 4578888888888776642110 01123455789999999999999999984 22222 222211
Q ss_pred HHHHHHHHHhccCCCCCCccHHHHHHHHHhHhCCceEEEEEecCCCC------C--cc----chhhccCCCCC--CCCCc
Q 038637 274 RVTKSILKSIANDQSNNDDDLNLLQEKLKKQLSGNKFLLVLDDVWNK------N--YN----YWSILSCPFGA--GAPGS 339 (962)
Q Consensus 274 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~------~--~~----~~~~l~~~l~~--~~~gs 339 (962)
+++.... ......+.......-+..+.+|++|++..- . .. ....+...+.. ...+.
T Consensus 522 ----~l~~~~v------Gese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v 591 (733)
T TIGR01243 522 ----EILSKWV------GESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNV 591 (733)
T ss_pred ----HHhhccc------CcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCE
Confidence 1111111 111122223333333456789999998321 0 00 01112222221 12344
Q ss_pred EEEEEecChhhHh-hh----CCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCCh
Q 038637 340 KIVVTTRNLDVAN-LT----RAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLP 405 (962)
Q Consensus 340 ~ilvTtR~~~v~~-~~----~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glP 405 (962)
.||.||...+... .. .-...+.++..+.++-.++|..+.-+. ......+ ...+++.+.|.-
T Consensus 592 ~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~-~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 592 VVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSM-PLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred EEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCC-CCCccCC----HHHHHHHcCCCC
Confidence 5666776544322 11 223467788888888888887654221 1111112 355667777654
No 268
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.54 E-value=0.061 Score=58.41 Aligned_cols=57 Identities=12% Similarity=0.120 Sum_probs=40.7
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhc----ccceEEEEEeCCCCCHHHHHHHHHHHhc
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQR----HFQFKAWACVSEDFDVFRVTKSILKSIA 284 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~~~~~il~~l~ 284 (962)
...++-|+|++|+|||+++.+++....... .=..++||+....|+..++. ++++.++
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 568999999999999999998875432210 11268899999988887654 3444443
No 269
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=95.50 E-value=0.038 Score=52.44 Aligned_cols=117 Identities=18% Similarity=0.136 Sum_probs=58.5
Q ss_pred EEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCC---CCCHHHHHHHHHHHh-----ccCC----CCCCcc---
Q 038637 229 SVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSE---DFDVFRVTKSILKSI-----ANDQ----SNNDDD--- 293 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~---~~~~~~~~~~il~~l-----~~~~----~~~~~~--- 293 (962)
..|-|++..|.||||+|-...- +...+=-.+.++..-+ ......+++.+ ..+ +... .....+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~--ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLAL--RALGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 4678888899999999976654 2223222233332222 23333333332 000 0000 000011
Q ss_pred HHHHHHHHHhHhCCce-EEEEEecCCCC---CccchhhccCCCCCCCCCcEEEEEecCh
Q 038637 294 LNLLQEKLKKQLSGNK-FLLVLDDVWNK---NYNYWSILSCPFGAGAPGSKIVVTTRNL 348 (962)
Q Consensus 294 ~~~~~~~l~~~l~~kr-~LlVlDdv~~~---~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 348 (962)
.....+..++.+.... =|+|||++-.. .....+.+...+.....+.-||+|.|+.
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 1122233344444434 49999998321 1233444555554455677899999984
No 270
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.48 E-value=0.0074 Score=60.69 Aligned_cols=60 Identities=25% Similarity=0.326 Sum_probs=27.4
Q ss_pred CCCcCCeEeccCC--CCc-cccccccccccCcEEeeCCCccccccc--hhcccCCCccEEecCCCC
Q 038637 637 NLKHLRCLNLSRT--RIQ-ILPESINSLYNLHTILLENCWELKKLC--KDMGNLTKLRHLRNSDAG 697 (962)
Q Consensus 637 ~L~~Lr~L~Ls~~--~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp--~~i~~L~~L~~L~l~~~~ 697 (962)
.|++|++|.++.| ++. .++....++++|++|++++| .+..+. ..+..+.+|..|++..|.
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhhhhcchhhhhcccCC
Confidence 4455555555555 332 33333444455555555555 222210 113444555555555544
No 271
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.47 E-value=0.037 Score=66.67 Aligned_cols=119 Identities=17% Similarity=0.190 Sum_probs=66.6
Q ss_pred ccccchhhHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHH
Q 038637 202 EVYGREKEEEEIVELLLNDGL---RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKS 278 (962)
Q Consensus 202 ~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~ 278 (962)
.++|.+..++.|.+.+..... ........+.++|+.|+|||++|+.++... . ...+.+++++-.+.. .
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l--~---~~~i~id~se~~~~~----~ 529 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL--G---IELLRFDMSEYMERH----T 529 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh--C---CCcEEeechhhcccc----c
Confidence 589999999999988863211 012235678999999999999999997732 2 123344444322211 1
Q ss_pred HHHHhccCCCC--CCccHHHHHHHHHhHhCCceEEEEEecCCCCCccchhhccCCCC
Q 038637 279 ILKSIANDQSN--NDDDLNLLQEKLKKQLSGNKFLLVLDDVWNKNYNYWSILSCPFG 333 (962)
Q Consensus 279 il~~l~~~~~~--~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~ 333 (962)
+ ..+.+.... .......+.+.++ +...-+|+||++...+.+.+..+...+.
T Consensus 530 ~-~~LiG~~~gyvg~~~~g~L~~~v~---~~p~sVlllDEieka~~~v~~~LLq~ld 582 (758)
T PRK11034 530 V-SRLIGAPPGYVGFDQGGLLTDAVI---KHPHAVLLLDEIEKAHPDVFNLLLQVMD 582 (758)
T ss_pred H-HHHcCCCCCcccccccchHHHHHH---hCCCcEEEeccHhhhhHHHHHHHHHHHh
Confidence 1 222222110 1111122333332 2334699999996666566666654443
No 272
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=95.46 E-value=0.17 Score=47.42 Aligned_cols=80 Identities=16% Similarity=0.296 Sum_probs=58.4
Q ss_pred hHHHHHHHHHHHHHHHHhcchHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHhhccc-CChHHHHHHHHHHHHHhhhhh
Q 038637 3 FIGEAVLGASVQMLLEKLAPEGVELLTRHEKLKADFIKWKGMLEMIRAVLADAEDRRT-KEKSVKMWLDNLQNLAYDLED 81 (962)
Q Consensus 3 ~~~~~~~~~~v~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~~~-~~~~~~~wl~~lr~~ayd~eD 81 (962)
.++||+++++++.++..+. .........+.-+++|...++.|..++++-+.-.. -|..-+.-++++.+..-++++
T Consensus 5 L~~gaalG~~~~eLlk~v~----~~~~k~~~fk~~l~~L~sTl~~i~P~i~eI~~~~~eld~~~~ee~e~L~~~L~~g~~ 80 (147)
T PF05659_consen 5 LVGGAALGAVFGELLKAVI----DASKKSLSFKSILKRLESTLESIIPIIKEIDKLNVELDRPRQEEIERLKELLEKGKE 80 (147)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHhhhhHHHHHHHHHHHhhhHHHHHHHHhhhcCCchhHHHHHHHHHHHHHHH
Confidence 3555666665555555444 44555556778889999999999999999887532 233337788999999999999
Q ss_pred hhhhh
Q 038637 82 ILDEF 86 (962)
Q Consensus 82 ~lD~~ 86 (962)
+++.|
T Consensus 81 LV~k~ 85 (147)
T PF05659_consen 81 LVEKC 85 (147)
T ss_pred HHHHh
Confidence 99998
No 273
>PRK07667 uridine kinase; Provisional
Probab=95.44 E-value=0.018 Score=57.59 Aligned_cols=38 Identities=18% Similarity=0.428 Sum_probs=30.2
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 210 EEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 210 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
.++|.+.+.... +...+|+|.|.+|+||||+|+.+...
T Consensus 3 ~~~~~~~~~~~~----~~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 3 TNELINIMKKHK----ENRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred HHHHHHHHHhcC----CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 566777775543 35589999999999999999999873
No 274
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.43 E-value=0.074 Score=57.76 Aligned_cols=58 Identities=17% Similarity=0.073 Sum_probs=41.9
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchh----cccceEEEEEeCCCCCHHHHHHHHHHHhcc
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQ----RHFQFKAWACVSEDFDVFRVTKSILKSIAN 285 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~F~~~~wv~v~~~~~~~~~~~~il~~l~~ 285 (962)
...++-|+|.+|+|||+||..++-..... ..-..++|++....|++.++ .+|++.++.
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~ 183 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGL 183 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCC
Confidence 56889999999999999998776432211 11126889999999988776 455666544
No 275
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=95.42 E-value=0.049 Score=56.16 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=23.5
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 226 DGFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 226 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
.+..+|+|.|+.|.|||||++.+..-
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 56899999999999999999998873
No 276
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.42 E-value=0.041 Score=56.85 Aligned_cols=79 Identities=14% Similarity=0.242 Sum_probs=47.6
Q ss_pred cEEEEEEcCCCchHHHHHHHHhCcc--chhcccceEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCccHHHHHHHHHhHh
Q 038637 228 FSVISINGMGGVGKTTLAQLVYNDD--RVQRHFQFKAWACVSEDFDVFRVTKSILKSIANDQSNNDDDLNLLQEKLKKQL 305 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~~~--~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 305 (962)
-++|.++||+|.|||+|.++.++.. |..+.+....-+.+... .++.....+ ...-...+.+.|++.+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh----sLFSKWFsE-------SgKlV~kmF~kI~ELv 245 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH----SLFSKWFSE-------SGKLVAKMFQKIQELV 245 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh----HHHHHHHhh-------hhhHHHHHHHHHHHHH
Confidence 5899999999999999999999864 33344544444444332 222222221 2223345556667777
Q ss_pred CCceE--EEEEecC
Q 038637 306 SGNKF--LLVLDDV 317 (962)
Q Consensus 306 ~~kr~--LlVlDdv 317 (962)
+++.. .+.+|.|
T Consensus 246 ~d~~~lVfvLIDEV 259 (423)
T KOG0744|consen 246 EDRGNLVFVLIDEV 259 (423)
T ss_pred hCCCcEEEEEeHHH
Confidence 66544 3445777
No 277
>PRK13695 putative NTPase; Provisional
Probab=95.37 E-value=0.012 Score=57.89 Aligned_cols=22 Identities=45% Similarity=0.498 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHhCc
Q 038637 230 VISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 230 vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
.|+|+|.+|+|||||++.+++.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~ 23 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAEL 23 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999998874
No 278
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.37 E-value=0.049 Score=56.80 Aligned_cols=82 Identities=22% Similarity=0.226 Sum_probs=47.0
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCccHHHHHHHHHhHhC
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSIANDQSNNDDDLNLLQEKLKKQLS 306 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 306 (962)
+..-+.++|.+|+|||.||.++.+. +...=-.+.+++ ..+++.++....... .....+.+.+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~--l~~~g~sv~f~~------~~el~~~Lk~~~~~~---------~~~~~l~~~l~ 166 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNE--LLKAGISVLFIT------APDLLSKLKAAFDEG---------RLEEKLLRELK 166 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHH--HHHcCCeEEEEE------HHHHHHHHHHHHhcC---------chHHHHHHHhh
Confidence 3456899999999999999999984 333222344553 445555554444321 11222222222
Q ss_pred CceEEEEEecCCCCCccchh
Q 038637 307 GNKFLLVLDDVWNKNYNYWS 326 (962)
Q Consensus 307 ~kr~LlVlDdv~~~~~~~~~ 326 (962)
+-=||||||+--.....|.
T Consensus 167 -~~dlLIiDDlG~~~~~~~~ 185 (254)
T COG1484 167 -KVDLLIIDDIGYEPFSQEE 185 (254)
T ss_pred -cCCEEEEecccCccCCHHH
Confidence 2238999999554434443
No 279
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.37 E-value=0.046 Score=59.25 Aligned_cols=87 Identities=20% Similarity=0.158 Sum_probs=48.3
Q ss_pred CcEEEEEEcCCCchHHH-HHHHHhCccchhcccceEEEEEeCC-CCCHHHHHHHHHHHhccCCCCCCccHHHHHHHHHhH
Q 038637 227 GFSVISINGMGGVGKTT-LAQLVYNDDRVQRHFQFKAWACVSE-DFDVFRVTKSILKSIANDQSNNDDDLNLLQEKLKKQ 304 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTt-La~~v~~~~~~~~~F~~~~wv~v~~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~ 304 (962)
+.++|.+||+.|+|||| ||+..+.-.....+ ..++.++... .....+-++.-.+-++.+-. ...+..++...+...
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~-~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~-vv~~~~el~~ai~~l 279 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKK-KKVAIITTDTYRIGAVEQLKTYADIMGVPLE-VVYSPKELAEAIEAL 279 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccC-cceEEEEeccchhhHHHHHHHHHHHhCCceE-EecCHHHHHHHHHHh
Confidence 47999999999999987 66666542211222 3345555432 22334444555555555543 445566666655543
Q ss_pred hCCceEEEEEecC
Q 038637 305 LSGNKFLLVLDDV 317 (962)
Q Consensus 305 l~~kr~LlVlDdv 317 (962)
++. =+|.+|-+
T Consensus 280 -~~~-d~ILVDTa 290 (407)
T COG1419 280 -RDC-DVILVDTA 290 (407)
T ss_pred -hcC-CEEEEeCC
Confidence 333 34555655
No 280
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.36 E-value=0.051 Score=48.79 Aligned_cols=50 Identities=20% Similarity=0.317 Sum_probs=34.8
Q ss_pred ccccchhhHHHHHHHHhcCCC-CCCCCcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 202 EVYGREKEEEEIVELLLNDGL-RADDGFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 202 ~~vGr~~~~~~l~~~L~~~~~-~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
.++|..-..+.+++.+..--. ....++-|++.+|+.|+|||.+|+.+++.
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 456666555555555532111 12467899999999999999999888775
No 281
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.36 E-value=0.0017 Score=65.16 Aligned_cols=103 Identities=20% Similarity=0.257 Sum_probs=78.6
Q ss_pred CCcccEEEeCCCcCcccccccccCCCcCCeEeccCCCCccccccccccccCcEEeeCCCccccccch--hcccCCCccEE
Q 038637 614 LPRLRVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLENCWELKKLCK--DMGNLTKLRHL 691 (962)
Q Consensus 614 l~~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L 691 (962)
+.+.+.|++.|| .+.++. .+.+|+.|+.|.||-|+|+.| +.+..+++|+.|.|+.| .+..+-. -+.+|++||.|
T Consensus 18 l~~vkKLNcwg~-~L~DIs-ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDIS-ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCC-CccHHH-HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhH
Confidence 556788899998 777763 356899999999999999988 56788999999999988 5655532 36789999999
Q ss_pred ecCCCCCccccCCC-----CCCCCCCCccCCeEe
Q 038637 692 RNSDAGLLEEMPKG-----FGKLTSLLTLGRFVV 720 (962)
Q Consensus 692 ~l~~~~~~~~~p~~-----i~~l~~L~~L~~~~~ 720 (962)
-|..|+....-+.. +.-|++|+.|....+
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~V 127 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVPV 127 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhccCccc
Confidence 99888765544433 456777777765444
No 282
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.36 E-value=0.091 Score=50.34 Aligned_cols=61 Identities=15% Similarity=0.249 Sum_probs=38.1
Q ss_pred HHHHHHHHhHhCCceEEEEEecCCC--CCccchhhccCCCCCCCCCcEEEEEecChhhHhhhC
Q 038637 295 NLLQEKLKKQLSGNKFLLVLDDVWN--KNYNYWSILSCPFGAGAPGSKIVVTTRNLDVANLTR 355 (962)
Q Consensus 295 ~~~~~~l~~~l~~kr~LlVlDdv~~--~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~ 355 (962)
++-.-.|.+.+-+++-+++=|.--. +....|+.+.-.-.-+..|+.||++|-+.++.+.+.
T Consensus 142 EQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 142 EQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence 3444456666777888888886421 112345444322223457999999999988877653
No 283
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.35 E-value=0.02 Score=55.11 Aligned_cols=92 Identities=21% Similarity=0.226 Sum_probs=65.3
Q ss_pred hccCCCCCCcCeEEEeecCCCCCCcCcCCCCCCCccEEEEeCCCCC--CCCCCCCCCCCcCeEeecCCCCceEeCccccC
Q 038637 791 LSMLKPHRDVQELTIRGYGGTKFPIWLGDSSFSKLVNLKFGYCRMC--TSLPSVGQLPLLKHLKISGMDRVKSVGLEFYG 868 (962)
Q Consensus 791 ~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~--~~l~~l~~lp~L~~L~L~~~~~~~~~~~~~~~ 868 (962)
+..+..++.|..|.+.+|.++.+..-+. ..+++|..|.|.+|++. +++..+..+|.|++|.+-+|+--..-.-..+-
T Consensus 57 l~~lp~l~rL~tLll~nNrIt~I~p~L~-~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yv 135 (233)
T KOG1644|consen 57 LDNLPHLPRLHTLLLNNNRITRIDPDLD-TFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYV 135 (233)
T ss_pred cccCCCccccceEEecCCcceeeccchh-hhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEE
Confidence 4556778889999999998888765554 47888999999999886 56677888999999999887632211100000
Q ss_pred CCCCCCCCCcceeecccc
Q 038637 869 SSCSVPFPSLETLSFSDM 886 (962)
Q Consensus 869 ~~~~~~f~~L~~L~l~~~ 886 (962)
.-.+|+|+.|++...
T Consensus 136 ---l~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 136 ---LYKLPSLRTLDFQKV 150 (233)
T ss_pred ---EEecCcceEeehhhh
Confidence 011789999998773
No 284
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=95.34 E-value=0.08 Score=59.28 Aligned_cols=25 Identities=32% Similarity=0.295 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
.+.++.++|.+|+||||.|..++..
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~ 122 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYY 122 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999998777663
No 285
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.24 E-value=0.0086 Score=60.22 Aligned_cols=85 Identities=28% Similarity=0.310 Sum_probs=56.9
Q ss_pred hCCCCcccEEEeCCC--cCcccccccccCCCcCCeEeccCCCCcccc--ccccccccCcEEeeCCCcccccc----chhc
Q 038637 611 LNHLPRLRVFSLCGY--CNIFNLPNEIGNLKHLRCLNLSRTRIQILP--ESINSLYNLHTILLENCWELKKL----CKDM 682 (962)
Q Consensus 611 l~~l~~Lr~L~L~~~--~~~~~lp~~i~~L~~Lr~L~Ls~~~i~~lp--~~i~~L~~L~~L~L~~~~~l~~l----p~~i 682 (962)
|..+++|+.|.++.| .....++-....+++|++|+|++|+|.-+- .....+.||..|++.+|.... + -..+
T Consensus 61 ~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~-l~dyre~vf 139 (260)
T KOG2739|consen 61 FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTN-LDDYREKVF 139 (260)
T ss_pred CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccc-cccHHHHHH
Confidence 567888999999988 444445544566799999999999987421 235578888899999984332 2 1124
Q ss_pred ccCCCccEEecCCC
Q 038637 683 GNLTKLRHLRNSDA 696 (962)
Q Consensus 683 ~~L~~L~~L~l~~~ 696 (962)
.-+++|++|+-...
T Consensus 140 ~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 140 LLLPSLKYLDGCDV 153 (260)
T ss_pred HHhhhhcccccccc
Confidence 45666666654433
No 286
>PRK00625 shikimate kinase; Provisional
Probab=95.23 E-value=0.11 Score=50.61 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=19.2
Q ss_pred EEEEEcCCCchHHHHHHHHhC
Q 038637 230 VISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 230 vi~I~G~~GiGKTtLa~~v~~ 250 (962)
.|.++|++|+||||+++.+..
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~ 22 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAK 22 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999976
No 287
>PRK10867 signal recognition particle protein; Provisional
Probab=95.21 E-value=0.1 Score=58.41 Aligned_cols=25 Identities=36% Similarity=0.417 Sum_probs=21.1
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhC
Q 038637 226 DGFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 226 ~~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
....+|.++|++|+||||.|..++.
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~ 122 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAK 122 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHH
Confidence 3478999999999999998776665
No 288
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.19 E-value=0.22 Score=56.84 Aligned_cols=50 Identities=22% Similarity=0.169 Sum_probs=34.8
Q ss_pred CccccchhhHHHHHHHHhcCCCC-------CCCCcEEEEEEcCCCchHHHHHHHHhC
Q 038637 201 AEVYGREKEEEEIVELLLNDGLR-------ADDGFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
+++=|.++-+.+|.+...-.... +-...+=|..+|++|.|||++|+++++
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAn 490 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALAN 490 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhh
Confidence 34445777777776555432110 113567889999999999999999998
No 289
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=95.18 E-value=0.048 Score=58.15 Aligned_cols=86 Identities=22% Similarity=0.151 Sum_probs=51.5
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHhccCCCC----CCccHHHHHHHH
Q 038637 226 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSIANDQSN----NDDDLNLLQEKL 301 (962)
Q Consensus 226 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~~~~~l 301 (962)
+.-+++-|+|+.|+||||||..+.. ..+..-...+|++....++... ++.++.+... .+...++....+
T Consensus 51 p~G~ivEi~G~~ssGKttLaL~~ia--~~q~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~ 123 (322)
T PF00154_consen 51 PRGRIVEIYGPESSGKTTLALHAIA--EAQKQGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIA 123 (322)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH--HHHHTT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHH
T ss_pred ccCceEEEeCCCCCchhhhHHHHHH--hhhcccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHH
Confidence 3568999999999999999988886 3344456788999988877633 3444433221 222334444455
Q ss_pred HhHhC-CceEEEEEecCC
Q 038637 302 KKQLS-GNKFLLVLDDVW 318 (962)
Q Consensus 302 ~~~l~-~kr~LlVlDdv~ 318 (962)
...++ +..-++|+|-|-
T Consensus 124 e~lirsg~~~lVVvDSv~ 141 (322)
T PF00154_consen 124 EQLIRSGAVDLVVVDSVA 141 (322)
T ss_dssp HHHHHTTSESEEEEE-CT
T ss_pred HHHhhcccccEEEEecCc
Confidence 55454 344588999883
No 290
>PRK13531 regulatory ATPase RavA; Provisional
Probab=95.18 E-value=0.023 Score=63.58 Aligned_cols=42 Identities=17% Similarity=0.194 Sum_probs=36.2
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 202 EVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 202 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
.++||++.++.+...+.... .|.|.|++|+|||++|+.+...
T Consensus 21 ~i~gre~vI~lll~aalag~--------hVLL~GpPGTGKT~LAraLa~~ 62 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSGE--------SVFLLGPPGIAKSLIARRLKFA 62 (498)
T ss_pred hccCcHHHHHHHHHHHccCC--------CEEEECCCChhHHHHHHHHHHH
Confidence 37899999999988886553 5789999999999999999873
No 291
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.18 E-value=0.2 Score=58.89 Aligned_cols=181 Identities=15% Similarity=0.116 Sum_probs=96.6
Q ss_pred CccccchhhHHH---HHHHHhcCCC---CCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHH
Q 038637 201 AEVYGREKEEEE---IVELLLNDGL---RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFR 274 (962)
Q Consensus 201 ~~~vGr~~~~~~---l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 274 (962)
.++.|-|+.+++ +++.|..+.. -+..-++=+.++|++|.|||-||++++-... +-|++++..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-------VPF~svSGS----- 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-------VPFFSVSGS----- 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-------CceeeechH-----
Confidence 467887765555 4555544321 0123466788999999999999999998432 224444432
Q ss_pred HHHHHHHHhccCCCCCCccHHHHHHHHHhHh-CCceEEEEEecCCCC---------------CccchhhccCCCCCCCCC
Q 038637 275 VTKSILKSIANDQSNNDDDLNLLQEKLKKQL-SGNKFLLVLDDVWNK---------------NYNYWSILSCPFGAGAPG 338 (962)
Q Consensus 275 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~---------------~~~~~~~l~~~l~~~~~g 338 (962)
+.++.+.+.. ...+..+...- ...+..|.+|++..- ......++...+.....+
T Consensus 379 ---EFvE~~~g~~-------asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~ 448 (774)
T KOG0731|consen 379 ---EFVEMFVGVG-------ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS 448 (774)
T ss_pred ---HHHHHhcccc-------hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC
Confidence 1122221111 01111222211 345677888876321 112233333333322222
Q ss_pred c--EEEEEecChhhHhh--h---CCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHH
Q 038637 339 S--KIVVTTRNLDVANL--T---RAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLA 407 (962)
Q Consensus 339 s--~ilvTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLa 407 (962)
+ -++-+|...++... + .-...+.++.-+.....++|..++-.... ..+..++.+ |+...-|.+=|
T Consensus 449 ~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~---~~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 449 KGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKL---DDEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred CcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCC---CcchhhHHH-HHhcCCCCcHH
Confidence 3 23335655544332 1 23456788888888889999888743322 234456666 88888887744
No 292
>PRK05439 pantothenate kinase; Provisional
Probab=95.17 E-value=0.099 Score=55.70 Aligned_cols=95 Identities=19% Similarity=0.126 Sum_probs=51.1
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcc--cceEEEEEeCCCCCHHHHHHHHHHHhccCC
Q 038637 210 EEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRH--FQFKAWACVSEDFDVFRVTKSILKSIANDQ 287 (962)
Q Consensus 210 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~--F~~~~wv~v~~~~~~~~~~~~il~~l~~~~ 287 (962)
...+...+.... .....-+|+|.|.+|+||||+|+.+.. ..... -..+.-++...-+...+.+..- ..+....
T Consensus 70 ~~~~~~~fl~~~--~~~~~~iIgIaG~~gsGKSTla~~L~~--~l~~~~~~~~v~vi~~DdFy~~~~~l~~~-~l~~~kg 144 (311)
T PRK05439 70 LQAALEQFLGKN--GQKVPFIIGIAGSVAVGKSTTARLLQA--LLSRWPEHPKVELVTTDGFLYPNAVLEER-GLMKRKG 144 (311)
T ss_pred HHHHHHHHhccc--CCCCCEEEEEECCCCCCHHHHHHHHHH--HHHhhCCCCceEEEeccccccCHHHHhhh-hccccCC
Confidence 344444444322 235678999999999999999998876 22221 1223334443333222222210 0111111
Q ss_pred CCCCccHHHHHHHHHhHhCCce
Q 038637 288 SNNDDDLNLLQEKLKKQLSGNK 309 (962)
Q Consensus 288 ~~~~~~~~~~~~~l~~~l~~kr 309 (962)
.....|.+.+.+.|....+++.
T Consensus 145 ~Pes~D~~~l~~~L~~Lk~G~~ 166 (311)
T PRK05439 145 FPESYDMRALLRFLSDVKSGKP 166 (311)
T ss_pred CcccccHHHHHHHHHHHHcCCC
Confidence 1245677777777777776665
No 293
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.12 E-value=0.052 Score=54.89 Aligned_cols=208 Identities=14% Similarity=0.170 Sum_probs=108.3
Q ss_pred cccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCc----cchhcccceEEEEEeCCC---------
Q 038637 203 VYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYND----DRVQRHFQFKAWACVSED--------- 269 (962)
Q Consensus 203 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~----~~~~~~F~~~~wv~v~~~--------- 269 (962)
+.++++..+++..... ..+.+...++|+.|.||-|.+..+.+. .-.+-.-+.+.|.+-+..
T Consensus 15 l~~~~e~~~~Lksl~~------~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS 88 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSS------TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSS 88 (351)
T ss_pred cccHHHHHHHHHHhcc------cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecc
Confidence 5677777777666553 235788999999999999977555442 111222344455444332
Q ss_pred -C-----------CHHHHHHHHHHHhccCCCCCCccHHHHHHHHHhHhCCceE-EEEEecCCCCCccchhhccCCCCCCC
Q 038637 270 -F-----------DVFRVTKSILKSIANDQSNNDDDLNLLQEKLKKQLSGNKF-LLVLDDVWNKNYNYWSILSCPFGAGA 336 (962)
Q Consensus 270 -~-----------~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~~~~~~~~~l~~~l~~~~ 336 (962)
+ .-+-+.+++++++.....-+ .-..+.| ++|+-.+.+-..+....+..-+..-.
T Consensus 89 ~yHlEitPSDaG~~DRvViQellKevAQt~qie-------------~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs 155 (351)
T KOG2035|consen 89 NYHLEITPSDAGNYDRVVIQELLKEVAQTQQIE-------------TQGQRPFKVVVINEADELTRDAQHALRRTMEKYS 155 (351)
T ss_pred cceEEeChhhcCcccHHHHHHHHHHHHhhcchh-------------hccccceEEEEEechHhhhHHHHHHHHHHHHHHh
Confidence 1 12334444444444332100 0012344 44444443322233333433333333
Q ss_pred CCcEEEEEecCh-h-hHhhhCCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHHHHHHhh
Q 038637 337 PGSKIVVTTRNL-D-VANLTRAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAAKTLGGL 414 (962)
Q Consensus 337 ~gs~ilvTtR~~-~-v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~~ 414 (962)
..+|+|+..-+. . +...-.-.-.+++...+++|-...+.+.+-.. +...+ .+++.+|+++++|.---...+-..
T Consensus 156 ~~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE-~l~lp---~~~l~rIa~kS~~nLRrAllmlE~ 231 (351)
T KOG2035|consen 156 SNCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKE-GLQLP---KELLKRIAEKSNRNLRRALLMLEA 231 (351)
T ss_pred cCceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHh-cccCc---HHHHHHHHHHhcccHHHHHHHHHH
Confidence 566776643321 1 11111112347889999999999888765322 22222 688999999999865333222222
Q ss_pred hc--CC--------CChhHHHHHHhhhhh
Q 038637 415 LR--GK--------DDLTDWEFVLNTDIW 433 (962)
Q Consensus 415 L~--~~--------~~~~~w~~~~~~~~~ 433 (962)
++ .. -..-+|+-+..+...
T Consensus 232 ~~~~n~~~~a~~~~i~~~dWe~~i~e~a~ 260 (351)
T KOG2035|consen 232 VRVNNEPFTANSQVIPKPDWEIYIQEIAR 260 (351)
T ss_pred HHhccccccccCCCCCCccHHHHHHHHHH
Confidence 21 11 124578877765443
No 294
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.12 E-value=0.061 Score=58.17 Aligned_cols=36 Identities=17% Similarity=0.148 Sum_probs=26.6
Q ss_pred EEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEe
Q 038637 229 SVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACV 266 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v 266 (962)
..+.++|..|+|||+||.++++.. ...-..++++++
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l--~~~g~~V~y~t~ 219 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKEL--LDRGKSVIYRTA 219 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHH--HHCCCeEEEEEH
Confidence 568999999999999999999843 222234556643
No 295
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.11 E-value=0.029 Score=54.84 Aligned_cols=22 Identities=41% Similarity=0.466 Sum_probs=19.9
Q ss_pred EEEEEcCCCchHHHHHHHHhCc
Q 038637 230 VISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 230 vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
.|.|.|++|+||||+|+.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999885
No 296
>PTZ00301 uridine kinase; Provisional
Probab=95.07 E-value=0.027 Score=56.77 Aligned_cols=23 Identities=35% Similarity=0.625 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCchHHHHHHHHhC
Q 038637 228 FSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
..+|+|.|.+|+||||||+.+..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~ 25 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVS 25 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHH
Confidence 47999999999999999998876
No 297
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.03 E-value=0.085 Score=53.99 Aligned_cols=126 Identities=13% Similarity=0.100 Sum_probs=73.0
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCC-----CCCHHHHHHHHHHHhccCCCC-----CCccHHH
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSE-----DFDVFRVTKSILKSIANDQSN-----NDDDLNL 296 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~-----~~~~~~~~~~il~~l~~~~~~-----~~~~~~~ 296 (962)
+..++++||..|.||||+++.+..=. ..-...++..-.+ .....+-..++++.++..... ..-+..+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~---~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQ 114 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLE---EPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQ 114 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCc---CCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchh
Confidence 34689999999999999999998722 2222333332111 223445566777776644311 2223333
Q ss_pred HH-HHHHhHhCCceEEEEEecCCCC-CccchhhccCCCC--CCCCCcEEEEEecChhhHhhhC
Q 038637 297 LQ-EKLKKQLSGNKFLLVLDDVWNK-NYNYWSILSCPFG--AGAPGSKIVVTTRNLDVANLTR 355 (962)
Q Consensus 297 ~~-~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~--~~~~gs~ilvTtR~~~v~~~~~ 355 (962)
.+ -.|.+.|.-+.-++|.|..-+. +...-.++...+. ....|-..+..|-+-.++..++
T Consensus 115 rQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~is 177 (268)
T COG4608 115 RQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYIS 177 (268)
T ss_pred hhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhc
Confidence 33 3466778888999999986332 1111122222222 1235667888888877777655
No 298
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.03 E-value=0.051 Score=59.86 Aligned_cols=53 Identities=32% Similarity=0.315 Sum_probs=37.8
Q ss_pred CCccccchh---hHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCchHHHHHHHHhCcc
Q 038637 200 EAEVYGREK---EEEEIVELLLNDGL---RADDGFSVISINGMGGVGKTTLAQLVYNDD 252 (962)
Q Consensus 200 ~~~~vGr~~---~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 252 (962)
-.++-|-|+ |+++|+++|..+.. -+..=++=|.++|++|.|||-||++|+-..
T Consensus 303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA 361 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA 361 (752)
T ss_pred cccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc
Confidence 345678765 66777888865431 012235678899999999999999999843
No 299
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.01 E-value=0.018 Score=57.57 Aligned_cols=106 Identities=13% Similarity=0.122 Sum_probs=51.6
Q ss_pred EEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCccHHHHHHHHHhHh---
Q 038637 229 SVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSIANDQSNNDDDLNLLQEKLKKQL--- 305 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l--- 305 (962)
+++.|.|++|.||||+++.+....... ...+.+......-... +.+..+.. ..............-
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~---g~~v~~~apT~~Aa~~----L~~~~~~~----a~Ti~~~l~~~~~~~~~~ 87 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAA---GKRVIGLAPTNKAAKE----LREKTGIE----AQTIHSFLYRIPNGDDEG 87 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHT---T--EEEEESSHHHHHH----HHHHHTS-----EEEHHHHTTEECCEECCS
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhC---CCeEEEECCcHHHHHH----HHHhhCcc----hhhHHHHHhcCCcccccc
Confidence 688899999999999999887633222 2333333333322222 22222211 111111110000000
Q ss_pred ---CCceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEEEecC
Q 038637 306 ---SGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVVTTRN 347 (962)
Q Consensus 306 ---~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~ 347 (962)
..++-+||+|+++--+...+..+...... .|+++|+.--.
T Consensus 88 ~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~ 130 (196)
T PF13604_consen 88 RPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDP 130 (196)
T ss_dssp SCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-T
T ss_pred cccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCc
Confidence 12335999999977665566666554443 57788876543
No 300
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.00 E-value=0.075 Score=58.13 Aligned_cols=89 Identities=18% Similarity=0.092 Sum_probs=49.0
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCC-CCCHHHHHHHHHHHhccCCCCCCccHHHHHHHHHhHh
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSE-DFDVFRVTKSILKSIANDQSNNDDDLNLLQEKLKKQL 305 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 305 (962)
+..++.++|+.|+||||++.++............+..++... .....+-++...+.++.+.. ...+...+...+.+ +
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~-~~~~~~~l~~~l~~-l 213 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVH-AVKDGGDLQLALAE-L 213 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceE-ecCCcccHHHHHHH-h
Confidence 346899999999999999999887422111112344554322 22344555555566655432 22223333344433 3
Q ss_pred CCceEEEEEecCC
Q 038637 306 SGNKFLLVLDDVW 318 (962)
Q Consensus 306 ~~kr~LlVlDdv~ 318 (962)
.++ =+|++|..-
T Consensus 214 ~~~-DlVLIDTaG 225 (374)
T PRK14722 214 RNK-HMVLIDTIG 225 (374)
T ss_pred cCC-CEEEEcCCC
Confidence 444 455688873
No 301
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.99 E-value=0.1 Score=54.04 Aligned_cols=48 Identities=17% Similarity=0.258 Sum_probs=34.1
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHH
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKS 278 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~ 278 (962)
.-.++.|.|.+|+|||++|.++.... . ..-..++|++..+ +..++.+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~-~-~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNG-L-QMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH-H-HcCCcEEEEEeeC--CHHHHHHH
Confidence 56899999999999999998876521 1 2345678888765 34455444
No 302
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.98 E-value=0.071 Score=55.29 Aligned_cols=88 Identities=20% Similarity=0.149 Sum_probs=54.5
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHhccCCC-----------------
Q 038637 226 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSIANDQS----------------- 288 (962)
Q Consensus 226 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~----------------- 288 (962)
+.-.++.|+|.+|+|||+||.++.... . .+=..++|++..+. ..++.+.+ .+++.+..
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~-~-~~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~ 97 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGA-L-KQGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEG 97 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHH-H-hCCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEeccccc
Confidence 356899999999999999999986531 1 22346778888654 34444443 23321110
Q ss_pred --CCCccHHHHHHHHHhHhCC-ceEEEEEecCC
Q 038637 289 --NNDDDLNLLQEKLKKQLSG-NKFLLVLDDVW 318 (962)
Q Consensus 289 --~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~ 318 (962)
....+.+.+.+.+.+.+.. +.-++|+|.+-
T Consensus 98 ~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 98 FEWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred cccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 0112335566666666653 55589999974
No 303
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.98 E-value=0.064 Score=61.54 Aligned_cols=76 Identities=21% Similarity=0.267 Sum_probs=49.7
Q ss_pred CCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCccHHHHHHHHHhH
Q 038637 225 DDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSIANDQSNNDDDLNLLQEKLKKQ 304 (962)
Q Consensus 225 ~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~ 304 (962)
.+.-+++.++|++|+||||||+-|+...- | .++=+++|+.-+...+-..|...+.....
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqaG----Y-sVvEINASDeRt~~~v~~kI~~avq~~s~---------------- 381 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQAG----Y-SVVEINASDERTAPMVKEKIENAVQNHSV---------------- 381 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhcC----c-eEEEecccccccHHHHHHHHHHHHhhccc----------------
Confidence 35679999999999999999999987421 2 24456666665555555554444433221
Q ss_pred h--CCceEEEEEecCCCCC
Q 038637 305 L--SGNKFLLVLDDVWNKN 321 (962)
Q Consensus 305 l--~~kr~LlVlDdv~~~~ 321 (962)
+ .+++.-+|+|.+....
T Consensus 382 l~adsrP~CLViDEIDGa~ 400 (877)
T KOG1969|consen 382 LDADSRPVCLVIDEIDGAP 400 (877)
T ss_pred cccCCCcceEEEecccCCc
Confidence 2 2567778999986543
No 304
>PTZ00035 Rad51 protein; Provisional
Probab=94.97 E-value=0.17 Score=55.24 Aligned_cols=59 Identities=15% Similarity=0.063 Sum_probs=40.2
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhCccchh----cccceEEEEEeCCCCCHHHHHHHHHHHhcc
Q 038637 226 DGFSVISINGMGGVGKTTLAQLVYNDDRVQ----RHFQFKAWACVSEDFDVFRVTKSILKSIAN 285 (962)
Q Consensus 226 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~F~~~~wv~v~~~~~~~~~~~~il~~l~~ 285 (962)
..-.++.|+|.+|+|||+|+..++-..... ..=..++|++....|+..++ .++.+.++.
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri-~~ia~~~g~ 178 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERI-VQIAERFGL 178 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHH-HHHHHHhCC
Confidence 356899999999999999998886432210 11234669998888887764 444555443
No 305
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=94.96 E-value=0.03 Score=59.64 Aligned_cols=51 Identities=27% Similarity=0.417 Sum_probs=43.7
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhC
Q 038637 200 EAEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 200 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
+..|+|.++.++++++.+.......+..-+|+.++|+.|.||||||+.+.+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 357999999999999999765543456789999999999999999998876
No 306
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.96 E-value=0.12 Score=57.98 Aligned_cols=88 Identities=14% Similarity=0.157 Sum_probs=46.9
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCC--HHHHHHHHHHHhccCCCC--CCccHHHHHHHH
Q 038637 226 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFD--VFRVTKSILKSIANDQSN--NDDDLNLLQEKL 301 (962)
Q Consensus 226 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~--~~~~~~~il~~l~~~~~~--~~~~~~~~~~~l 301 (962)
..+.+|.++|.+|+||||+|..++..... ..+ .+..|++. .+. ..+.++.+..+++.+... ...+........
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~-~g~-kV~lV~~D-~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~a 169 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKK-KGL-KVGLVAAD-TYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEG 169 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHH-cCC-eEEEecCC-CCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHH
Confidence 35789999999999999999988864322 122 23334332 222 234455556665543221 112332322222
Q ss_pred HhHhCCceEEEEEecC
Q 038637 302 KKQLSGNKFLLVLDDV 317 (962)
Q Consensus 302 ~~~l~~kr~LlVlDdv 317 (962)
.+.+.+. =+||+|..
T Consensus 170 l~~~~~~-DvVIIDTA 184 (437)
T PRK00771 170 LEKFKKA-DVIIVDTA 184 (437)
T ss_pred HHHhhcC-CEEEEECC
Confidence 2223333 46777776
No 307
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.94 E-value=0.023 Score=57.09 Aligned_cols=110 Identities=12% Similarity=0.211 Sum_probs=56.7
Q ss_pred EEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHH-HHHHHHHHHhccCCCCCCccHHHHHHHHHhHhCC
Q 038637 229 SVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVF-RVTKSILKSIANDQSNNDDDLNLLQEKLKKQLSG 307 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~-~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 307 (962)
.+|.|+|+.|.||||++..+... ...+....+++ +.+..... .-...++.+- . ...+.....+.++..+..
T Consensus 2 GlilI~GptGSGKTTll~~ll~~--~~~~~~~~i~t-~e~~~E~~~~~~~~~i~q~----~-vg~~~~~~~~~i~~aLr~ 73 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDY--INKNKTHHILT-IEDPIEFVHESKRSLINQR----E-VGLDTLSFENALKAALRQ 73 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH--hhhcCCcEEEE-EcCCccccccCccceeeec----c-cCCCccCHHHHHHHHhcC
Confidence 47899999999999999887763 22233333333 22221100 0000111110 0 111223355667777766
Q ss_pred ceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEEEecChhhH
Q 038637 308 NKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVVTTRNLDVA 351 (962)
Q Consensus 308 kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~ 351 (962)
..=.+++|.+.+. +....+... ...|-.++.|+-..++.
T Consensus 74 ~pd~ii~gEird~--e~~~~~l~~---a~~G~~v~~t~Ha~~~~ 112 (198)
T cd01131 74 DPDVILVGEMRDL--ETIRLALTA---AETGHLVMSTLHTNSAA 112 (198)
T ss_pred CcCEEEEcCCCCH--HHHHHHHHH---HHcCCEEEEEecCCcHH
Confidence 6779999999543 333332222 22455677777655443
No 308
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.94 E-value=0.073 Score=58.64 Aligned_cols=25 Identities=28% Similarity=0.222 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
...++.++|++|+||||+|..++..
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3578999999999999999988763
No 309
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.91 E-value=0.15 Score=50.42 Aligned_cols=120 Identities=16% Similarity=0.108 Sum_probs=62.7
Q ss_pred cEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEE---eCCCCCHHHHH------HHHHHHhccCCC-----CCCcc
Q 038637 228 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWAC---VSEDFDVFRVT------KSILKSIANDQS-----NNDDD 293 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~---v~~~~~~~~~~------~~il~~l~~~~~-----~~~~~ 293 (962)
-.+++|+|+.|.|||||++.++... ......+++. +. ..+..... .++++.++.... ..-..
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~---~~~~G~v~~~g~~~~-~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~ 100 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLL---KPSSGEILLDGKDLA-SLSPKELARKIAYVPQALELLGLAHLADRPFNELSG 100 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCCcEEEECCEECC-cCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCH
Confidence 4689999999999999999998732 2233444332 21 11222211 123444443211 01111
Q ss_pred HHHHHHHHHhHhCCceEEEEEecCCC-CCccchhhccCCCCCC-CC-CcEEEEEecChhhH
Q 038637 294 LNLLQEKLKKQLSGNKFLLVLDDVWN-KNYNYWSILSCPFGAG-AP-GSKIVVTTRNLDVA 351 (962)
Q Consensus 294 ~~~~~~~l~~~l~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~-~~-gs~ilvTtR~~~v~ 351 (962)
.+...-.+.+.+...+-++++|+--. -+....+.+...+... .. +..||++|.+.+..
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~ 161 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA 161 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 22223345555666778899998732 1222233333333221 12 67788888876544
No 310
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.90 E-value=0.15 Score=56.16 Aligned_cols=83 Identities=20% Similarity=0.213 Sum_probs=48.7
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHhccCCCC----CCccHHHHHHHHH
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSIANDQSN----NDDDLNLLQEKLK 302 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~~~~~l~ 302 (962)
.-.++.|.|.+|+|||||+.+++.. ....-..++|++..+. ..++ +.-++.++..... ...+.+.+.+.+.
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~--~a~~g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~ 155 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAAR--LAKRGGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASIE 155 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH--HHhcCCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHH
Confidence 4579999999999999999988763 2222245677765443 3332 2223444432221 1233444444443
Q ss_pred hHhCCceEEEEEecC
Q 038637 303 KQLSGNKFLLVLDDV 317 (962)
Q Consensus 303 ~~l~~kr~LlVlDdv 317 (962)
+.+.-+||+|.+
T Consensus 156 ---~~~~~lVVIDSI 167 (372)
T cd01121 156 ---ELKPDLVIIDSI 167 (372)
T ss_pred ---hcCCcEEEEcch
Confidence 235567888887
No 311
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=94.88 E-value=0.1 Score=51.12 Aligned_cols=22 Identities=45% Similarity=0.481 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHhCc
Q 038637 230 VISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 230 vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
++.++|++|+||||++..++..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~ 23 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6789999999999999988763
No 312
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.87 E-value=0.11 Score=58.81 Aligned_cols=89 Identities=18% Similarity=0.087 Sum_probs=45.4
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCC-CCCHHHHHHHHHHHhccCCCCCCccHHHHHHHHHhHh
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSE-DFDVFRVTKSILKSIANDQSNNDDDLNLLQEKLKKQL 305 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 305 (962)
...+|.|+|++|+||||++..+............+..++... .....+.++.....++.... ...+...+...+++.
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~-~a~d~~~L~~aL~~l- 426 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVH-EADSAESLLDLLERL- 426 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeE-ecCcHHHHHHHHHHh-
Confidence 458999999999999999988876321111122344444322 11122222222233332221 223344455555433
Q ss_pred CCceEEEEEecCC
Q 038637 306 SGNKFLLVLDDVW 318 (962)
Q Consensus 306 ~~kr~LlVlDdv~ 318 (962)
.+ .=+|++|..-
T Consensus 427 ~~-~DLVLIDTaG 438 (559)
T PRK12727 427 RD-YKLVLIDTAG 438 (559)
T ss_pred cc-CCEEEecCCC
Confidence 33 4477788773
No 313
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.87 E-value=0.02 Score=57.42 Aligned_cols=81 Identities=25% Similarity=0.322 Sum_probs=43.4
Q ss_pred EEEEEcCCCchHHHHHHHHhCccchhcccc---eEEEEEeCCCCCHHHHHHHHHHHhccC---CCCCCccHHHHHHHHHh
Q 038637 230 VISINGMGGVGKTTLAQLVYNDDRVQRHFQ---FKAWACVSEDFDVFRVTKSILKSIAND---QSNNDDDLNLLQEKLKK 303 (962)
Q Consensus 230 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~---~~~wv~v~~~~~~~~~~~~il~~l~~~---~~~~~~~~~~~~~~l~~ 303 (962)
||+|.|++|+||||+|+.+...... .... .....+............. -...... ......+.+.+.+.+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~-~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~~~~~~p~a~d~~~l~~~l~~ 78 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK-RGIPAMEMDIILSLDDFYDDYHLRDR-KGRGENRYNFDHPDAFDFDLLKEDLKA 78 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT-CTTTCCCSEEEEEGGGGBHHHHHHHH-HHHCTTTSSTTSGGGBSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc-cCcCccceeEEEeecccccccchhhH-hhccccccCCCCccccCHHHHHHHHHH
Confidence 6999999999999999999873211 1122 1222322222222222221 1111111 11145677778888887
Q ss_pred HhCCceEEE
Q 038637 304 QLSGNKFLL 312 (962)
Q Consensus 304 ~l~~kr~Ll 312 (962)
..+++..-+
T Consensus 79 L~~g~~i~~ 87 (194)
T PF00485_consen 79 LKNGGSIEI 87 (194)
T ss_dssp HHTTSCEEE
T ss_pred HhCCCcccc
Confidence 767766544
No 314
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=94.87 E-value=0.064 Score=58.81 Aligned_cols=81 Identities=20% Similarity=0.251 Sum_probs=49.3
Q ss_pred CccccchhhHHHHHHHHhcC--------CCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhccc---ceEEEEEeC-C
Q 038637 201 AEVYGREKEEEEIVELLLND--------GLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHF---QFKAWACVS-E 268 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F---~~~~wv~v~-~ 268 (962)
..++|.++.+..+...+... .-......+.|.++|++|+|||++|+.+... ....| +...+...+ .
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~--l~~~fi~vdat~~~e~g~v 89 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKL--ANAPFIKVEATKFTEVGYV 89 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHH--hCCeEEEeecceeecCCcc
Confidence 45889988888887666542 0001123467899999999999999999873 33333 222122221 2
Q ss_pred CCCHHHHHHHHHHHh
Q 038637 269 DFDVFRVTKSILKSI 283 (962)
Q Consensus 269 ~~~~~~~~~~il~~l 283 (962)
..+...+++.+.+..
T Consensus 90 G~dvE~i~r~l~e~A 104 (441)
T TIGR00390 90 GRDVESMVRDLTDAA 104 (441)
T ss_pred cCCHHHHHHHHHHHH
Confidence 235666666665554
No 315
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.85 E-value=0.035 Score=52.49 Aligned_cols=35 Identities=31% Similarity=0.225 Sum_probs=25.3
Q ss_pred cEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEE
Q 038637 228 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWA 264 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv 264 (962)
..||.|+|.+|+||||||+++.. +....-..+.++
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~--~L~~~g~~~~~L 36 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALER--RLFARGIKVYLL 36 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHH--HHHHTTS-EEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH--HHHHcCCcEEEe
Confidence 36899999999999999999988 333333334444
No 316
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.83 E-value=0.0044 Score=72.42 Aligned_cols=61 Identities=25% Similarity=0.173 Sum_probs=34.4
Q ss_pred CCCcCCeEeccCCC-Ccc--ccccccccccCcEEeeCCC-ccccccc----hhcccCCCccEEecCCCC
Q 038637 637 NLKHLRCLNLSRTR-IQI--LPESINSLYNLHTILLENC-WELKKLC----KDMGNLTKLRHLRNSDAG 697 (962)
Q Consensus 637 ~L~~Lr~L~Ls~~~-i~~--lp~~i~~L~~L~~L~L~~~-~~l~~lp----~~i~~L~~L~~L~l~~~~ 697 (962)
.++.|+.|.+.++. +.. +-.....+++|+.|++++| ......+ .....+++|++|++..+.
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 254 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCG 254 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhh
Confidence 36677777777653 333 3345567788888888763 2221111 123445666777766654
No 317
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.81 E-value=0.019 Score=46.29 Aligned_cols=22 Identities=36% Similarity=0.616 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHhCc
Q 038637 230 VISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 230 vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
+|.|.|..|+||||+|+.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999988874
No 318
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=94.80 E-value=0.16 Score=59.82 Aligned_cols=48 Identities=19% Similarity=0.251 Sum_probs=38.4
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 200 EAEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 200 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
...++|....+.++.+.+..... ...-|.|+|..|+|||++|+.+++.
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~lA~~ih~~ 242 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVAR----SNSTVLLRGESGTGKELIAKAIHYL 242 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCccHHHHHHHHHHh
Confidence 45789999999999888865432 2345679999999999999999874
No 319
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.79 E-value=0.11 Score=58.64 Aligned_cols=87 Identities=17% Similarity=0.079 Sum_probs=46.3
Q ss_pred cEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCC-CHHHHHHHHHHHhccCCCCCCccHHHHHHHHHhHhC
Q 038637 228 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDF-DVFRVTKSILKSIANDQSNNDDDLNLLQEKLKKQLS 306 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 306 (962)
.+++.++|++|+||||++..++........-..+..|+....- ...+.++...+.++.+.. ...+...+...+.+. .
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~-~~~~~~~l~~~l~~~-~ 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVE-VVYDPKELAKALEQL-R 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceE-ccCCHHhHHHHHHHh-C
Confidence 4699999999999999888776532211222345556543211 111223333333443322 233344555555542 3
Q ss_pred CceEEEEEecC
Q 038637 307 GNKFLLVLDDV 317 (962)
Q Consensus 307 ~kr~LlVlDdv 317 (962)
..=+|++|..
T Consensus 299 -~~DlVlIDt~ 308 (424)
T PRK05703 299 -DCDVILIDTA 308 (424)
T ss_pred -CCCEEEEeCC
Confidence 2457888866
No 320
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.79 E-value=0.13 Score=48.62 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCchHHHHHHHHhCc
Q 038637 228 FSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
-.+++|+|..|.|||||++.+..-
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCC
Confidence 368999999999999999999874
No 321
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=94.79 E-value=0.036 Score=60.40 Aligned_cols=45 Identities=20% Similarity=0.152 Sum_probs=36.3
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhC
Q 038637 202 EVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 202 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
.++|+...+.++.+.+..... .-.-|.|+|..|+||+++|+.++.
T Consensus 7 ~liG~S~~~~~~~~~i~~~a~----~~~pVlI~GE~GtGK~~lA~~iH~ 51 (326)
T PRK11608 7 NLLGEANSFLEVLEQVSRLAP----LDKPVLIIGERGTGKELIASRLHY 51 (326)
T ss_pred ccEECCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHH
Confidence 488999999988888765432 234578999999999999999986
No 322
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=94.79 E-value=0.091 Score=53.59 Aligned_cols=21 Identities=38% Similarity=0.556 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHhC
Q 038637 230 VISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 230 vi~I~G~~GiGKTtLa~~v~~ 250 (962)
+|+|.|..|+||||+|+.+..
T Consensus 1 IigI~G~sGSGKTTla~~L~~ 21 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQA 21 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHH
Confidence 589999999999999999987
No 323
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=94.77 E-value=0.1 Score=51.00 Aligned_cols=115 Identities=18% Similarity=0.207 Sum_probs=59.4
Q ss_pred cEEEEEEcCCCchHHHHHHHHhCcc-c--hhcc---cc--eEEEEEeCCCCCHHHHHHHHHHHhccCCC---CC--Ccc-
Q 038637 228 FSVISINGMGGVGKTTLAQLVYNDD-R--VQRH---FQ--FKAWACVSEDFDVFRVTKSILKSIANDQS---NN--DDD- 293 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~~~-~--~~~~---F~--~~~wv~v~~~~~~~~~~~~il~~l~~~~~---~~--~~~- 293 (962)
-.+++|+|+.|.|||||.+.+..+. . +... |. ...|+ .+ .+.++.++.... .. .-+
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSg 90 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSG 90 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCH
Confidence 4689999999999999999886321 1 1111 11 12232 22 355666654321 01 111
Q ss_pred HHHHHHHHHhHhCCc--eEEEEEecCCCC-CccchhhccCCCCC-CCCCcEEEEEecChhhHh
Q 038637 294 LNLLQEKLKKQLSGN--KFLLVLDDVWNK-NYNYWSILSCPFGA-GAPGSKIVVTTRNLDVAN 352 (962)
Q Consensus 294 ~~~~~~~l~~~l~~k--r~LlVlDdv~~~-~~~~~~~l~~~l~~-~~~gs~ilvTtR~~~v~~ 352 (962)
.+...-.+...+..+ .-++++|+--.. +....+.+...+.. ...|..||++|.+.+...
T Consensus 91 Gq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 91 GELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 122223344455555 678888986331 22222333332221 124677888888876554
No 324
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=94.76 E-value=0.071 Score=58.06 Aligned_cols=45 Identities=20% Similarity=0.106 Sum_probs=33.8
Q ss_pred cccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 203 VYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 203 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
+||....+.++.+.+..... .-.-|.|+|..|+||+++|+.+++.
T Consensus 1 liG~S~~m~~~~~~~~~~a~----~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAP----LDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhC----CCCCEEEECCCCChHHHHHHHHHHh
Confidence 46777777777777754432 2345789999999999999999863
No 325
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=94.75 E-value=0.053 Score=65.85 Aligned_cols=47 Identities=23% Similarity=0.263 Sum_probs=37.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
..++|+...+.++.+.+..-.. .-.-|.|+|..|+|||++|+.+++.
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~----~~~pVLI~GE~GTGK~~lA~~ih~~ 422 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQ----SDSTVLILGETGTGKELIARAIHNL 422 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhC----CCCCEEEECCCCcCHHHHHHHHHHh
Confidence 4689999999888777754322 2346789999999999999999874
No 326
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.75 E-value=0.027 Score=57.21 Aligned_cols=26 Identities=38% Similarity=0.597 Sum_probs=23.3
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 226 DGFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 226 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
.+..+|+|+|.+|+||||||+.++..
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999873
No 327
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.74 E-value=0.019 Score=53.00 Aligned_cols=21 Identities=43% Similarity=0.656 Sum_probs=19.2
Q ss_pred EEEEcCCCchHHHHHHHHhCc
Q 038637 231 ISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 231 i~I~G~~GiGKTtLa~~v~~~ 251 (962)
|.|.|.+|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999874
No 328
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.73 E-value=0.026 Score=57.21 Aligned_cols=26 Identities=38% Similarity=0.556 Sum_probs=22.9
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 226 DGFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 226 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
+...+|+|+|++|+||||||+.++..
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 35689999999999999999999863
No 329
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=94.72 E-value=0.13 Score=61.78 Aligned_cols=115 Identities=17% Similarity=0.201 Sum_probs=69.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCC--CCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRAD--DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKS 278 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~--~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~ 278 (962)
..++|.++.+..|.+.+........ .......+.|+.|+|||-||++++. .+-+..+..+-++.++ ...
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~--~~Fgse~~~IriDmse------~~e- 632 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAE--YVFGSEENFIRLDMSE------FQE- 632 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHH--HHcCCccceEEechhh------hhh-
Confidence 3588999999999888876543112 2567888999999999999999876 3333444445554443 222
Q ss_pred HHHHhccCCC-CCCccHHHHHHHHHhHhCCceE-EEEEecCCCCCccchhhc
Q 038637 279 ILKSIANDQS-NNDDDLNLLQEKLKKQLSGNKF-LLVLDDVWNKNYNYWSIL 328 (962)
Q Consensus 279 il~~l~~~~~-~~~~~~~~~~~~l~~~l~~kr~-LlVlDdv~~~~~~~~~~l 328 (962)
+.+.++.+.. ......+ .|.+.++.++| +|+||||.-.+......+
T Consensus 633 vskligsp~gyvG~e~gg----~LteavrrrP~sVVLfdeIEkAh~~v~n~l 680 (898)
T KOG1051|consen 633 VSKLIGSPPGYVGKEEGG----QLTEAVKRRPYSVVLFEEIEKAHPDVLNIL 680 (898)
T ss_pred hhhccCCCcccccchhHH----HHHHHHhcCCceEEEEechhhcCHHHHHHH
Confidence 2233333221 1222233 45555666666 667899966555444433
No 330
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.71 E-value=0.12 Score=50.62 Aligned_cols=24 Identities=38% Similarity=0.483 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCchHHHHHHHHhCc
Q 038637 228 FSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
-.+++|+|+.|.|||||++.+..-
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcC
Confidence 468999999999999999999863
No 331
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.69 E-value=0.17 Score=53.47 Aligned_cols=90 Identities=20% Similarity=0.180 Sum_probs=47.7
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHH--HHHHHHHHHhccCCC--CCCccH-HHHHHH
Q 038637 226 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVF--RVTKSILKSIANDQS--NNDDDL-NLLQEK 300 (962)
Q Consensus 226 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~--~~~~~il~~l~~~~~--~~~~~~-~~~~~~ 300 (962)
.+.++|.++|++|+||||++..++... ...-..+.+++.. .+... +-++...+..+.+.. ....+. ....+.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l--~~~g~~V~li~~D-~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~ 146 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKL--KKQGKSVLLAAGD-TFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDA 146 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHH--HhcCCEEEEEeCC-CCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH
Confidence 356899999999999999988887632 2222234455443 33322 333344444442211 011222 222344
Q ss_pred HHhHhCCceEEEEEecCC
Q 038637 301 LKKQLSGNKFLLVLDDVW 318 (962)
Q Consensus 301 l~~~l~~kr~LlVlDdv~ 318 (962)
+........=++++|-.-
T Consensus 147 l~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 147 IQKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHHCCCCEEEEeCCC
Confidence 444433444577788763
No 332
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=94.68 E-value=0.13 Score=54.35 Aligned_cols=80 Identities=21% Similarity=0.139 Sum_probs=42.6
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhCccchhccc-c-eEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCccHHHHHHHHHh
Q 038637 226 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHF-Q-FKAWACVSEDFDVFRVTKSILKSIANDQSNNDDDLNLLQEKLKK 303 (962)
Q Consensus 226 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F-~-~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~ 303 (962)
....+|+|.|..|+||||+|+.+.. ...... . .+..++...-.......... ..+.........+.+.+.+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~--ll~~~~~~g~V~vi~~D~f~~~~~~l~~~-g~~~~~g~P~s~D~~~l~~~L~~ 136 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA--LLSRWPEHRKVELITTDGFLHPNQVLKER-NLMKKKGFPESYDMHRLVKFLSD 136 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH--HHhhcCCCCceEEEecccccccHHHHHHc-CCccccCCChhccHHHHHHHHHH
Confidence 4678999999999999999987754 121111 1 23334333322222222221 00101111245666777777777
Q ss_pred HhCCc
Q 038637 304 QLSGN 308 (962)
Q Consensus 304 ~l~~k 308 (962)
...++
T Consensus 137 Lk~g~ 141 (290)
T TIGR00554 137 LKSGK 141 (290)
T ss_pred HHCCC
Confidence 66654
No 333
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=94.68 E-value=0.06 Score=57.67 Aligned_cols=26 Identities=27% Similarity=0.368 Sum_probs=23.8
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 226 DGFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 226 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
..+..+.|+|++|.|||.+|++++..
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999984
No 334
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.66 E-value=0.051 Score=55.22 Aligned_cols=63 Identities=24% Similarity=0.190 Sum_probs=37.1
Q ss_pred hHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHH
Q 038637 209 EEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRV 275 (962)
Q Consensus 209 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~ 275 (962)
+..++++.+.... ++..+|+|+|++|+|||||..++....+.+++=-.++-|+-|..++--.+
T Consensus 14 ~~~~ll~~l~~~~----g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAl 76 (266)
T PF03308_consen 14 EARELLKRLYPHT----GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGAL 76 (266)
T ss_dssp HHHHHHHHHGGGT----T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---S
T ss_pred HHHHHHHHHHhhc----CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcc
Confidence 4556777776543 36789999999999999999888775433333333444555555543333
No 335
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.64 E-value=0.035 Score=55.41 Aligned_cols=52 Identities=29% Similarity=0.357 Sum_probs=39.0
Q ss_pred CccccchhhHHH---HHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCcc
Q 038637 201 AEVYGREKEEEE---IVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDD 252 (962)
Q Consensus 201 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 252 (962)
+++||.++.+.+ |+++|.....=++-.++-|..+|++|.|||.+|+++++..
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~ 175 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA 175 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc
Confidence 568998876643 5667755432123457889999999999999999999953
No 336
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.59 E-value=0.055 Score=53.27 Aligned_cols=22 Identities=45% Similarity=0.667 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHhCc
Q 038637 230 VISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 230 vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
+|+|.|.+|+||||||+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 337
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.58 E-value=0.027 Score=53.24 Aligned_cols=21 Identities=38% Similarity=0.526 Sum_probs=19.3
Q ss_pred EEEEEcCCCchHHHHHHHHhC
Q 038637 230 VISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 230 vi~I~G~~GiGKTtLa~~v~~ 250 (962)
+|.++|++|+||||+|+.+..
T Consensus 1 lii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999975
No 338
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.56 E-value=0.087 Score=53.10 Aligned_cols=83 Identities=25% Similarity=0.332 Sum_probs=51.2
Q ss_pred EEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCC-CHHHHHHHHHHHhccC-------CCCCCccH------
Q 038637 229 SVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDF-DVFRVTKSILKSIAND-------QSNNDDDL------ 294 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~~~~~il~~l~~~-------~~~~~~~~------ 294 (962)
.-++|.|.+|+|||+|+..+.++.. -+..+++.+++.. ...++.+++...-..+ ..+...-.
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~----~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~ 91 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQD----ADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPY 91 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT----TTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhccc----ccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhc
Confidence 5679999999999999999987532 2344788887664 4555555554331111 11011111
Q ss_pred --HHHHHHHHhHhCCceEEEEEecC
Q 038637 295 --NLLQEKLKKQLSGNKFLLVLDDV 317 (962)
Q Consensus 295 --~~~~~~l~~~l~~kr~LlVlDdv 317 (962)
-...+.+++ +++.+|+++||+
T Consensus 92 ~a~t~AEyfrd--~G~dVlli~Dsl 114 (215)
T PF00006_consen 92 TALTIAEYFRD--QGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHHH--TTSEEEEEEETH
T ss_pred cchhhhHHHhh--cCCceeehhhhh
Confidence 122344444 799999999998
No 339
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.56 E-value=0.18 Score=50.79 Aligned_cols=61 Identities=11% Similarity=0.147 Sum_probs=36.6
Q ss_pred HHHHHHHHhHhCCceEEEEEecCCCC-CccchhhccCCCCC--CCCCcEEEEEecChhhHhhhC
Q 038637 295 NLLQEKLKKQLSGNKFLLVLDDVWNK-NYNYWSILSCPFGA--GAPGSKIVVTTRNLDVANLTR 355 (962)
Q Consensus 295 ~~~~~~l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~--~~~gs~ilvTtR~~~v~~~~~ 355 (962)
++-.-.+.+.|-..+-+|+-|+--.. +...-+.+...+.. ...|..||+.|-+..+|..+.
T Consensus 147 qqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 147 QQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred HHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCC
Confidence 33344567777788888888875221 11122223333322 235888999999999998643
No 340
>PRK06547 hypothetical protein; Provisional
Probab=94.54 E-value=0.045 Score=53.27 Aligned_cols=26 Identities=38% Similarity=0.547 Sum_probs=23.1
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 226 DGFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 226 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
....+|.|.|++|+||||+|+.+...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999863
No 341
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.51 E-value=0.17 Score=54.94 Aligned_cols=89 Identities=15% Similarity=0.051 Sum_probs=52.4
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCC-CHHHHHHHHHHHhccCCCCCCccHHHHHHHHHhHh
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDF-DVFRVTKSILKSIANDQSNNDDDLNLLQEKLKKQL 305 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 305 (962)
+.+++.|+|+.|+||||++..++.... ..-..+.++++...- ...+-++...+.++.+.. ...+...+.+.+...-
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~--~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~-~~~dp~dL~~al~~l~ 281 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLL--KQNRTVGFITTDTFRSGAVEQFQGYADKLDVELI-VATSPAELEEAVQYMT 281 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEE-ecCCHHHHHHHHHHHH
Confidence 568999999999999999988876322 221245566554321 223445555555544332 2345566666665433
Q ss_pred C-CceEEEEEecCC
Q 038637 306 S-GNKFLLVLDDVW 318 (962)
Q Consensus 306 ~-~kr~LlVlDdv~ 318 (962)
. +..=+|++|-.-
T Consensus 282 ~~~~~D~VLIDTAG 295 (407)
T PRK12726 282 YVNCVDHILIDTVG 295 (407)
T ss_pred hcCCCCEEEEECCC
Confidence 1 334577788773
No 342
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.44 E-value=0.087 Score=55.30 Aligned_cols=23 Identities=30% Similarity=0.315 Sum_probs=18.1
Q ss_pred EEEEEEcCCCchHHHHHHHHhCc
Q 038637 229 SVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
+.|.|.|.+|+||||+|+.+...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~ 24 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKY 24 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Confidence 46899999999999999999874
No 343
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=94.41 E-value=0.14 Score=61.20 Aligned_cols=86 Identities=23% Similarity=0.162 Sum_probs=57.2
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHhccCCCC----CCccHHHHHHHH
Q 038637 226 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSIANDQSN----NDDDLNLLQEKL 301 (962)
Q Consensus 226 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~~~~~l 301 (962)
+.-+++-|+|++|+||||||.+++.. ....=..++|++..+.++.. .+++++.+... .....++....+
T Consensus 58 p~GsiteI~G~~GsGKTtLal~~~~~--a~~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i 130 (790)
T PRK09519 58 PRGRVIEIYGPESSGKTTVALHAVAN--AQAAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIA 130 (790)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHH
Confidence 35689999999999999999776552 22223567899888877743 56666654321 233345555555
Q ss_pred HhHhC-CceEEEEEecCC
Q 038637 302 KKQLS-GNKFLLVLDDVW 318 (962)
Q Consensus 302 ~~~l~-~kr~LlVlDdv~ 318 (962)
...++ ++--|||+|-+-
T Consensus 131 ~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 131 DMLIRSGALDIVVIDSVA 148 (790)
T ss_pred HHHhhcCCCeEEEEcchh
Confidence 55554 456689999984
No 344
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.38 E-value=0.055 Score=49.67 Aligned_cols=41 Identities=27% Similarity=0.204 Sum_probs=29.1
Q ss_pred hhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCcc
Q 038637 208 KEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDD 252 (962)
Q Consensus 208 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 252 (962)
++.+++.+.|...- ..-.+|.+.|.-|.||||+++.++...
T Consensus 6 ~~t~~l~~~l~~~l----~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 6 KAMDKFGKAFAKPL----DFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHhC----CCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34455555554322 134589999999999999999998753
No 345
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.38 E-value=0.15 Score=50.27 Aligned_cols=24 Identities=42% Similarity=0.520 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCchHHHHHHHHhCc
Q 038637 228 FSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
-.+++|+|+.|.|||||++.+..-
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 358999999999999999999874
No 346
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.37 E-value=0.049 Score=50.59 Aligned_cols=44 Identities=23% Similarity=0.348 Sum_probs=32.2
Q ss_pred EEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHhccC
Q 038637 230 VISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSIAND 286 (962)
Q Consensus 230 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~ 286 (962)
+|.|-|++|.||||+|+.+.++.-.. | | +.-.++++|++..+.+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~--~-----v------saG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK--L-----V------SAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc--e-----e------eccHHHHHHHHHcCCC
Confidence 68999999999999999998853221 1 1 3345677888777664
No 347
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.37 E-value=0.15 Score=56.41 Aligned_cols=88 Identities=14% Similarity=0.108 Sum_probs=50.3
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhc--ccceEEEEEeCCCCCHH--HHHHHHHHHhccCCCCCCccHHHHHHHHH
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQR--HFQFKAWACVSEDFDVF--RVTKSILKSIANDQSNNDDDLNLLQEKLK 302 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~--~F~~~~wv~v~~~~~~~--~~~~~il~~l~~~~~~~~~~~~~~~~~l~ 302 (962)
..++|.++|+.|+||||.+..++....... +-..+..+++. .+... .-++...+.++.+.. ...+.+.+...+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D-t~R~aa~eQL~~~a~~lgvpv~-~~~~~~~l~~~L~ 250 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID-NYRIGAKKQIQTYGDIMGIPVK-AIESFKDLKEEIT 250 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc-CccHHHHHHHHHHhhcCCcceE-eeCcHHHHHHHHH
Confidence 468999999999999999988876332211 11233344443 33322 234455555554332 3334455555555
Q ss_pred hHhCCceEEEEEecCC
Q 038637 303 KQLSGNKFLLVLDDVW 318 (962)
Q Consensus 303 ~~l~~kr~LlVlDdv~ 318 (962)
+. .+.=+|++|..-
T Consensus 251 ~~--~~~DlVLIDTaG 264 (388)
T PRK12723 251 QS--KDFDLVLVDTIG 264 (388)
T ss_pred Hh--CCCCEEEEcCCC
Confidence 43 344578888873
No 348
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=94.34 E-value=0.059 Score=55.51 Aligned_cols=64 Identities=23% Similarity=0.208 Sum_probs=44.8
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHH
Q 038637 211 EEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKS 278 (962)
Q Consensus 211 ~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~ 278 (962)
.+|+..+.... ++..+|+|+|.||+|||||...+.....-.++=-.++=|+-|.+++--.++-+
T Consensus 38 ~~ll~~l~p~t----G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGD 101 (323)
T COG1703 38 RELLRALYPRT----GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGD 101 (323)
T ss_pred HHHHHHHhhcC----CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCcccccc
Confidence 45666665443 57889999999999999999888775544555455666776777765444433
No 349
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.29 E-value=0.24 Score=49.68 Aligned_cols=95 Identities=19% Similarity=0.204 Sum_probs=57.0
Q ss_pred CccccchhhHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGL-------RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVF 273 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 273 (962)
+++=|-.+++++|.+...-.-- -+-+..+=|..+|++|.|||-+|++|+| +....|-.++
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravan--rtdacfirvi----------- 243 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVAN--RTDACFIRVI----------- 243 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhc--ccCceEEeeh-----------
Confidence 3455777888888776533211 0113456788999999999999999999 5555553332
Q ss_pred HHHHHHHHHhccCCCCCCccHHHHHHHHHhHhCC-ceEEEEEecC
Q 038637 274 RVTKSILKSIANDQSNNDDDLNLLQEKLKKQLSG-NKFLLVLDDV 317 (962)
Q Consensus 274 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv 317 (962)
-.++.+..-+ +....+.++.+.-+. |-++|+||.+
T Consensus 244 --gselvqkyvg-------egarmvrelf~martkkaciiffdei 279 (435)
T KOG0729|consen 244 --GSELVQKYVG-------EGARMVRELFEMARTKKACIIFFDEI 279 (435)
T ss_pred --hHHHHHHHhh-------hhHHHHHHHHHHhcccceEEEEeecc
Confidence 1122222211 112344455555554 5678888887
No 350
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.28 E-value=0.051 Score=57.30 Aligned_cols=34 Identities=32% Similarity=0.545 Sum_probs=25.9
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 211 EEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 211 ~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
..+++.+.... +-+.++|+.|+|||++++...+.
T Consensus 23 ~~ll~~l~~~~-------~pvLl~G~~GtGKT~li~~~l~~ 56 (272)
T PF12775_consen 23 SYLLDLLLSNG-------RPVLLVGPSGTGKTSLIQNFLSS 56 (272)
T ss_dssp HHHHHHHHHCT-------EEEEEESSTTSSHHHHHHHHHHC
T ss_pred HHHHHHHHHcC-------CcEEEECCCCCchhHHHHhhhcc
Confidence 45666665542 56789999999999999988753
No 351
>PRK06762 hypothetical protein; Provisional
Probab=94.27 E-value=0.033 Score=54.23 Aligned_cols=23 Identities=39% Similarity=0.592 Sum_probs=21.0
Q ss_pred EEEEEEcCCCchHHHHHHHHhCc
Q 038637 229 SVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
.+|.|+|++|+||||+|+.+.+.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999863
No 352
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.23 E-value=0.12 Score=50.01 Aligned_cols=116 Identities=18% Similarity=0.059 Sum_probs=58.8
Q ss_pred cEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCC--CCCHHHHHHHHHHHhccCCCCCCccHHHHHHHHHhHh
Q 038637 228 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSE--DFDVFRVTKSILKSIANDQSNNDDDLNLLQEKLKKQL 305 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~--~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 305 (962)
-.+++|+|+.|.|||||.+.++.-. ......+++.-.. ..+..+..+ +.++--. +-...+...-.+.+.+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~---~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~~--qLS~G~~qrl~laral 97 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLY---KPDSGEILVDGKEVSFASPRDARR---AGIAMVY--QLSVGERQMVEIARAL 97 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC---CCCCeEEEECCEECCcCCHHHHHh---cCeEEEE--ecCHHHHHHHHHHHHH
Confidence 3689999999999999999998732 2234444442111 111111111 1111100 1111222233445555
Q ss_pred CCceEEEEEecCCC-CCccchhhccCCCCC-CCCCcEEEEEecChhhH
Q 038637 306 SGNKFLLVLDDVWN-KNYNYWSILSCPFGA-GAPGSKIVVTTRNLDVA 351 (962)
Q Consensus 306 ~~kr~LlVlDdv~~-~~~~~~~~l~~~l~~-~~~gs~ilvTtR~~~v~ 351 (962)
-.++-++++|+.-. -+......+...+.. ...|..||++|.+....
T Consensus 98 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~ 145 (163)
T cd03216 98 ARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEV 145 (163)
T ss_pred hcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 66677888998733 122223333333321 12466788888876533
No 353
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=94.20 E-value=0.097 Score=58.51 Aligned_cols=50 Identities=28% Similarity=0.268 Sum_probs=35.4
Q ss_pred CccccchhhHHHHHHHHhcC----CC------CCCCCcEEEEEEcCCCchHHHHHHHHhC
Q 038637 201 AEVYGREKEEEEIVELLLND----GL------RADDGFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~----~~------~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
..+||.+..++.+...+... .. .....-+.+.++|++|+|||++|+.++.
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~ 130 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLAR 130 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 45899999998886655211 00 0011235689999999999999999986
No 354
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.20 E-value=0.033 Score=54.47 Aligned_cols=25 Identities=48% Similarity=0.525 Sum_probs=22.5
Q ss_pred cEEEEEEcCCCchHHHHHHHHhCcc
Q 038637 228 FSVISINGMGGVGKTTLAQLVYNDD 252 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~~~ 252 (962)
..+|+|-||-|+||||||+++.+..
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l 28 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHL 28 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHh
Confidence 4789999999999999999999854
No 355
>PRK14974 cell division protein FtsY; Provisional
Probab=94.17 E-value=0.21 Score=54.10 Aligned_cols=90 Identities=14% Similarity=0.128 Sum_probs=47.1
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCC--HHHHHHHHHHHhccCCCC--CCccHHH-HHHHH
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFD--VFRVTKSILKSIANDQSN--NDDDLNL-LQEKL 301 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~--~~~~~~~il~~l~~~~~~--~~~~~~~-~~~~l 301 (962)
+..+|.++|++|+||||++..++.... ...+ .++.+. .+.+. ..+-++.....++.+... ...+... +.+.+
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~-~~g~-~V~li~-~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLK-KNGF-SVVIAA-GDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCC-eEEEec-CCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 568999999999999998877775322 1223 233333 23332 223345556666543211 1222222 23333
Q ss_pred HhHhCCceEEEEEecCCC
Q 038637 302 KKQLSGNKFLLVLDDVWN 319 (962)
Q Consensus 302 ~~~l~~kr~LlVlDdv~~ 319 (962)
........=+|++|-.-.
T Consensus 216 ~~~~~~~~DvVLIDTaGr 233 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGR 233 (336)
T ss_pred HHHHhCCCCEEEEECCCc
Confidence 332222223888898743
No 356
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.13 E-value=0.48 Score=55.26 Aligned_cols=158 Identities=16% Similarity=0.092 Sum_probs=83.2
Q ss_pred CccccchhhHHHHHHHHh---cCCC----CCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHH
Q 038637 201 AEVYGREKEEEEIVELLL---NDGL----RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVF 273 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~---~~~~----~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 273 (962)
..+.|.+..++.+.+.+. .... .+-...+.+-++|++|.|||.||+++++ ....+|-.+.+-
T Consensus 242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~--~~~~~fi~v~~~--------- 310 (494)
T COG0464 242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVAL--ESRSRFISVKGS--------- 310 (494)
T ss_pred ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHh--hCCCeEEEeeCH---------
Confidence 345566666655555442 2111 0123566899999999999999999998 333444322211
Q ss_pred HHHHHHHHHhccCCCCCCccHHHHHHHHHhHhCCceEEEEEecCCCC------Cc-----cchhhccCCCCCCC--CCcE
Q 038637 274 RVTKSILKSIANDQSNNDDDLNLLQEKLKKQLSGNKFLLVLDDVWNK------NY-----NYWSILSCPFGAGA--PGSK 340 (962)
Q Consensus 274 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~------~~-----~~~~~l~~~l~~~~--~gs~ 340 (962)
+++... -......+.+......+..+..|++|.+..- +. ....++...+.... .+..
T Consensus 311 ----~l~sk~------vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~ 380 (494)
T COG0464 311 ----ELLSKW------VGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVL 380 (494)
T ss_pred ----HHhccc------cchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceE
Confidence 111111 1111222333334444578899999998320 00 11222233332122 3333
Q ss_pred EEEEecChhhHh-hh----CCCCcccCCCCCHHHHHHHHHHhhc
Q 038637 341 IVVTTRNLDVAN-LT----RAYPKYGLKELSDDDCLRVVIQHSL 379 (962)
Q Consensus 341 ilvTtR~~~v~~-~~----~~~~~~~l~~L~~~~~~~Lf~~~a~ 379 (962)
||-||-...... .+ .-...+.+..-+.++..+.|..+.-
T Consensus 381 vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~ 424 (494)
T COG0464 381 VIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLR 424 (494)
T ss_pred EEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhc
Confidence 444554433222 11 2234678889999999999988763
No 357
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.12 E-value=0.04 Score=54.92 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhC
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
+.++|.|+|++|+||||+|+.+..
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~ 25 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVE 25 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999985
No 358
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=94.06 E-value=0.13 Score=56.62 Aligned_cols=81 Identities=21% Similarity=0.252 Sum_probs=50.3
Q ss_pred CccccchhhHHHHHHHHhcC--------CCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhccc---ceEEEEEe-CC
Q 038637 201 AEVYGREKEEEEIVELLLND--------GLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHF---QFKAWACV-SE 268 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F---~~~~wv~v-~~ 268 (962)
..++|.+..++.+..++... ........+.|.++|++|+|||+||+.+... ....| +...|... ..
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~--l~~~fi~vD~t~f~e~Gyv 92 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKL--ANAPFIKVEATKFTEVGYV 92 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHH--hCChheeecchhhccCCcc
Confidence 45889999999998888541 0000112467899999999999999999873 22222 22222221 12
Q ss_pred CCCHHHHHHHHHHHh
Q 038637 269 DFDVFRVTKSILKSI 283 (962)
Q Consensus 269 ~~~~~~~~~~il~~l 283 (962)
..+...+++.+.+..
T Consensus 93 G~d~e~~ir~L~~~A 107 (443)
T PRK05201 93 GRDVESIIRDLVEIA 107 (443)
T ss_pred cCCHHHHHHHHHHHH
Confidence 235666666666655
No 359
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.06 E-value=0.052 Score=55.52 Aligned_cols=21 Identities=38% Similarity=0.608 Sum_probs=19.2
Q ss_pred EEEEcCCCchHHHHHHHHhCc
Q 038637 231 ISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 231 i~I~G~~GiGKTtLa~~v~~~ 251 (962)
|.|+|++|+||||+|+.+...
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 889999999999999999763
No 360
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.03 E-value=0.26 Score=47.84 Aligned_cols=121 Identities=9% Similarity=-0.011 Sum_probs=57.2
Q ss_pred cEEEEEEcCCCchHHHHHHHHhCccch-hcc--cce-EEEEEeCCCCCHHHHHHHHHHHhccCCCCCCccHHHHHHHHHh
Q 038637 228 FSVISINGMGGVGKTTLAQLVYNDDRV-QRH--FQF-KAWACVSEDFDVFRVTKSILKSIANDQSNNDDDLNLLQEKLKK 303 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~--F~~-~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~ 303 (962)
-.+++|+|+.|.|||||++.+..-... .+. ++. ..-..+.+..... ...+.+.+.......-...+...-.+.+
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~--~~tv~~nl~~~~~~~LS~G~~~rv~lar 104 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLP--LGTLREQLIYPWDDVLSGGEQQRLAFAR 104 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccc--cccHHHHhhccCCCCCCHHHHHHHHHHH
Confidence 468999999999999999999874221 111 111 0011223332111 0122222211011122222333334455
Q ss_pred HhCCceEEEEEecCCCC-CccchhhccCCCCCCCCCcEEEEEecChhhHh
Q 038637 304 QLSGNKFLLVLDDVWNK-NYNYWSILSCPFGAGAPGSKIVVTTRNLDVAN 352 (962)
Q Consensus 304 ~l~~kr~LlVlDdv~~~-~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 352 (962)
.+-.++=++++|+--.. +......+...+... +..||++|.+.....
T Consensus 105 al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 105 LLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred HHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 55566677888886321 112222222222221 356788887765543
No 361
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.02 E-value=0.3 Score=51.95 Aligned_cols=54 Identities=24% Similarity=0.169 Sum_probs=36.5
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHh
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSI 283 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l 283 (962)
.-.++.|.|.+|+||||++.+++...- ..+=..++|++.... ..++...+...+
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~-~~~g~~vl~iS~E~~--~~~~~~r~~~~~ 82 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLI-TQHGVRVGTISLEEP--VVRTARRLLGQY 82 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH-HhcCceEEEEEcccC--HHHHHHHHHHHH
Confidence 346888999999999999998876421 221245778877653 455666665543
No 362
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=94.02 E-value=1.9 Score=46.00 Aligned_cols=157 Identities=11% Similarity=0.056 Sum_probs=85.5
Q ss_pred cEEEEEEcCCCchHHHHHHHHhCcc---c-----hhcccceEEEEEe-CCCCCHHHHHHHHHHHhccCCCCCCccHHHHH
Q 038637 228 FSVISINGMGGVGKTTLAQLVYNDD---R-----VQRHFQFKAWACV-SEDFDVFRVTKSILKSIANDQSNNDDDLNLLQ 298 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~~~---~-----~~~~F~~~~wv~v-~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~ 298 (962)
.++..++|..|.||+++|..+.+.. . ...|=+...++.. +......++ +++.+.+...+
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~I-r~l~~~~~~~~----------- 85 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEF-LSAINKLYFSS----------- 85 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHH-HHHHHHhccCC-----------
Confidence 3555699999999999998886631 0 0111112222221 111111111 12222221110
Q ss_pred HHHHhHhCCceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEEEecC-hhhHh-hhCCCCcccCCCCCHHHHHHHHHH
Q 038637 299 EKLKKQLSGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVVTTRN-LDVAN-LTRAYPKYGLKELSDDDCLRVVIQ 376 (962)
Q Consensus 299 ~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-~~v~~-~~~~~~~~~l~~L~~~~~~~Lf~~ 376 (962)
.-.+.+=++|+|++...+......+...+......+.+|++|.+ ..+.. .......+++.++++++..+.+..
T Consensus 86 -----~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 86 -----FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLS 160 (299)
T ss_pred -----cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHH
Confidence 01246778888998555544555666666655566776665543 33333 233456799999999999887765
Q ss_pred hhcCCCCCCCCcchHHHHHHHHHhcCCChHHHHHH
Q 038637 377 HSLGATGFSTNQSLKDVGEKIAKKCKGLPLAAKTL 411 (962)
Q Consensus 377 ~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~ 411 (962)
.. . .++.+..++...+|.--|+..+
T Consensus 161 ~~-------~---~~~~a~~~a~~~~~~~~a~~~~ 185 (299)
T PRK07132 161 KN-------K---EKEYNWFYAYIFSNFEQAEKYI 185 (299)
T ss_pred cC-------C---ChhHHHHHHHHcCCHHHHHHHH
Confidence 31 1 1244666676777744555554
No 363
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=94.01 E-value=0.032 Score=50.26 Aligned_cols=27 Identities=37% Similarity=0.610 Sum_probs=18.5
Q ss_pred EEEEcCCCchHHHHHHHHhCccchhcccc
Q 038637 231 ISINGMGGVGKTTLAQLVYNDDRVQRHFQ 259 (962)
Q Consensus 231 i~I~G~~GiGKTtLa~~v~~~~~~~~~F~ 259 (962)
|.|+|.+|+||||+|+.++. .....|.
T Consensus 2 vLleg~PG~GKT~la~~lA~--~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALAR--SLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHH--HTT--EE
T ss_pred EeeECCCccHHHHHHHHHHH--HcCCcee
Confidence 67999999999999999987 4555664
No 364
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.98 E-value=0.048 Score=55.34 Aligned_cols=23 Identities=26% Similarity=0.287 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCchHHHHHHHHhC
Q 038637 228 FSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
.+++.|+|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48899999999999999998874
No 365
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=93.97 E-value=0.0098 Score=69.45 Aligned_cols=157 Identities=27% Similarity=0.337 Sum_probs=95.4
Q ss_pred CCCCcCeEEEeecCCCC---CCcCcCCCCCCCccEEEEeCC-CCCCCCC-----CCCCCCCcCeEeecCCCCceEeCccc
Q 038637 796 PHRDVQELTIRGYGGTK---FPIWLGDSSFSKLVNLKFGYC-RMCTSLP-----SVGQLPLLKHLKISGMDRVKSVGLEF 866 (962)
Q Consensus 796 ~~~~L~~L~l~~~~~~~---~p~~~~~~~l~~L~~L~L~~~-~~~~~l~-----~l~~lp~L~~L~L~~~~~~~~~~~~~ 866 (962)
.+++|+.|.+.++.... +-... ..+++|+.|++++| ......+ ....+++|+.|+++.+..+...+...
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALA--LKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHH--hhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 36888888888764322 11222 26789999999884 3322211 33456889999999887666665544
Q ss_pred cCCCCCCCCCCcceeeccccccccccccccCCccccCcCCccceEeEccCCCcccc----CCCCCCCcceEEEccc---c
Q 038637 867 YGSSCSVPFPSLETLSFSDMREWEEWISCGAGQEVDEVFPKLRKLSLFNCYKLQGT----LPKRLLLLEKLVIKSC---H 939 (962)
Q Consensus 867 ~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~----lp~~l~~L~~L~i~~c---~ 939 (962)
.... +|+|+.|.+.+|..+++-.. ......+|+|+.|+++.|..++.. +..++++|+.|.+.++ +
T Consensus 264 l~~~----c~~L~~L~l~~c~~lt~~gl----~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~ 335 (482)
T KOG1947|consen 264 LASR----CPNLETLSLSNCSNLTDEGL----VSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCP 335 (482)
T ss_pred HHhh----CCCcceEccCCCCccchhHH----HHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCc
Confidence 4322 78999999888776443322 112346788999999999776421 1234566666555444 3
Q ss_pred Cccc----cCCCCC--CcCEEecCCCCCC
Q 038637 940 RLLV----TIQCLP--TLTELHTKLCRRV 962 (962)
Q Consensus 940 ~l~~----~l~~l~--~L~~L~l~~C~~L 962 (962)
.+.. .+.... .+..+.+.+|++|
T Consensus 336 ~l~~~~l~~~~~~~~d~~~~~~~~~~~~l 364 (482)
T KOG1947|consen 336 SLTDLSLSGLLTLTSDDLAELILRSCPKL 364 (482)
T ss_pred cHHHHHHHHhhccCchhHhHHHHhcCCCc
Confidence 4422 122222 6777777777764
No 366
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=93.96 E-value=0.029 Score=49.86 Aligned_cols=21 Identities=48% Similarity=0.629 Sum_probs=18.7
Q ss_pred EEEEcCCCchHHHHHHHHhCc
Q 038637 231 ISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 231 i~I~G~~GiGKTtLa~~v~~~ 251 (962)
|.|+|++|+|||+||+.++.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~ 21 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKD 21 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 579999999999999998873
No 367
>PRK03839 putative kinase; Provisional
Probab=93.92 E-value=0.038 Score=54.61 Aligned_cols=22 Identities=45% Similarity=0.777 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHhCc
Q 038637 230 VISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 230 vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
.|.|+|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999884
No 368
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.91 E-value=0.033 Score=33.21 Aligned_cols=22 Identities=32% Similarity=0.628 Sum_probs=18.2
Q ss_pred cccEEEeCCCcCcccccccccCC
Q 038637 616 RLRVFSLCGYCNIFNLPNEIGNL 638 (962)
Q Consensus 616 ~Lr~L~L~~~~~~~~lp~~i~~L 638 (962)
+|++|||++| .++.+|.+|++|
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSS-EESEEGTTTTT-
T ss_pred CccEEECCCC-cCEeCChhhcCC
Confidence 5899999999 788999877654
No 369
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.90 E-value=0.18 Score=53.03 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=29.9
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCC
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSE 268 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~ 268 (962)
.-+++.|.|++|+|||++|.++.... ...=..+++++...
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~--a~~Ge~vlyis~Ee 74 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQ--ASRGNPVLFVTVES 74 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH--HhCCCcEEEEEecC
Confidence 56899999999999999999876532 12234677888764
No 370
>PRK04328 hypothetical protein; Provisional
Probab=93.89 E-value=0.18 Score=52.65 Aligned_cols=41 Identities=17% Similarity=0.228 Sum_probs=31.0
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCC
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSED 269 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~ 269 (962)
.-.++.|.|.+|.|||+||.++.... ...-...+|++..+.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~--~~~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNG--LQMGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH--HhcCCcEEEEEeeCC
Confidence 56899999999999999998876532 223456788887664
No 371
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=93.89 E-value=0.13 Score=60.08 Aligned_cols=63 Identities=16% Similarity=0.113 Sum_probs=44.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCC
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSED 269 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~ 269 (962)
..++|+...++++.+.+..... .-.-|.|+|..|+|||++|+.+++... ..-...+.|++..-
T Consensus 187 ~~iig~s~~~~~~~~~i~~~a~----~~~pVlI~Ge~GtGK~~~A~~ih~~s~--r~~~p~v~v~c~~~ 249 (509)
T PRK05022 187 GEMIGQSPAMQQLKKEIEVVAA----SDLNVLILGETGVGKELVARAIHAASP--RADKPLVYLNCAAL 249 (509)
T ss_pred CceeecCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHhCC--cCCCCeEEEEcccC
Confidence 5689999999999888865432 335678999999999999999987421 11123345665554
No 372
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=93.85 E-value=0.22 Score=52.33 Aligned_cols=126 Identities=16% Similarity=0.052 Sum_probs=64.3
Q ss_pred hHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEE---eCCCCCHHHHHHHHHHHhcc
Q 038637 209 EEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWAC---VSEDFDVFRVTKSILKSIAN 285 (962)
Q Consensus 209 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~---v~~~~~~~~~~~~il~~l~~ 285 (962)
..+.++..|... .+...+.|+|+.|.|||||.+.+..... .....+++. +....+.. ++......
T Consensus 97 ~~~~~l~~l~~~-----~~~~~~~i~g~~g~GKttl~~~l~~~~~---~~~G~i~~~g~~v~~~d~~~----ei~~~~~~ 164 (270)
T TIGR02858 97 AADKLLPYLVRN-----NRVLNTLIISPPQCGKTTLLRDLARILS---TGISQLGLRGKKVGIVDERS----EIAGCVNG 164 (270)
T ss_pred cHHHHHHHHHhC-----CCeeEEEEEcCCCCCHHHHHHHHhCccC---CCCceEEECCEEeecchhHH----HHHHHhcc
Confidence 345555556532 2457899999999999999999987421 222233321 11111112 22222211
Q ss_pred CCCC-------CCccHHHHHHHHHhHh-CCceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEEEecChhhHh
Q 038637 286 DQSN-------NDDDLNLLQEKLKKQL-SGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVVTTRNLDVAN 352 (962)
Q Consensus 286 ~~~~-------~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 352 (962)
-... ...+... ...+...+ ...+=++++|.+-. .+.+..+...+ ..|..||+||-...+..
T Consensus 165 ~~q~~~~~r~~v~~~~~k-~~~~~~~i~~~~P~villDE~~~--~e~~~~l~~~~---~~G~~vI~ttH~~~~~~ 233 (270)
T TIGR02858 165 VPQHDVGIRTDVLDGCPK-AEGMMMLIRSMSPDVIVVDEIGR--EEDVEALLEAL---HAGVSIIATAHGRDVED 233 (270)
T ss_pred cccccccccccccccchH-HHHHHHHHHhCCCCEEEEeCCCc--HHHHHHHHHHH---hCCCEEEEEechhHHHH
Confidence 1100 0011111 11222222 24677999999843 23344444433 25778999998765543
No 373
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=93.84 E-value=0.14 Score=48.64 Aligned_cols=22 Identities=36% Similarity=0.646 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHhCc
Q 038637 230 VISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 230 vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
+|.|+|.+|+||||+|+.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999998773
No 374
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=93.83 E-value=0.22 Score=55.31 Aligned_cols=87 Identities=17% Similarity=0.188 Sum_probs=51.4
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCC-HHHHHHHHHHHhccCC------CCCCccHHH---
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFD-VFRVTKSILKSIANDQ------SNNDDDLNL--- 296 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~-~~~~~~~il~~l~~~~------~~~~~~~~~--- 296 (962)
.-..++|+|..|+|||||++.+++.. ..+..+.+-+++... ..++...++..-+... ..+......
T Consensus 161 ~GqrigI~G~sG~GKSTLL~~I~~~~----~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 161 KGQRMGLFAGSGVGKSVLLGMMTRGT----TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CCCEEEEECCCCCChhHHHHHhccCC----CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 34678999999999999999998632 224556666776643 3445555544321111 001111111
Q ss_pred --HHHHHHhHh--CCceEEEEEecC
Q 038637 297 --LQEKLKKQL--SGNKFLLVLDDV 317 (962)
Q Consensus 297 --~~~~l~~~l--~~kr~LlVlDdv 317 (962)
..-.+.+++ +++.+|+++||+
T Consensus 237 ~~~A~tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 237 CETATTIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcCh
Confidence 112233333 589999999998
No 375
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.81 E-value=0.49 Score=53.49 Aligned_cols=154 Identities=16% Similarity=0.235 Sum_probs=82.1
Q ss_pred cEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCccHHHHHHHHHhHhCC
Q 038637 228 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSIANDQSNNDDDLNLLQEKLKKQLSG 307 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 307 (962)
..=|.++|++|.|||-||++|+|. .+..| ++|-.. +++...-+ .....+....++.-..
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANE--ag~NF-----isVKGP--------ELlNkYVG------ESErAVR~vFqRAR~s 603 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANE--AGANF-----ISVKGP--------ELLNKYVG------ESERAVRQVFQRARAS 603 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhh--ccCce-----EeecCH--------HHHHHHhh------hHHHHHHHHHHHhhcC
Confidence 556789999999999999999994 44444 333332 11111111 1122223333333356
Q ss_pred ceEEEEEecCCCC-----Cccc------hhhccCCCCC--CCCCcEEEEEecChhhHhh--hC---CCCcccCCCCCHHH
Q 038637 308 NKFLLVLDDVWNK-----NYNY------WSILSCPFGA--GAPGSKIVVTTRNLDVANL--TR---AYPKYGLKELSDDD 369 (962)
Q Consensus 308 kr~LlVlDdv~~~-----~~~~------~~~l~~~l~~--~~~gs~ilvTtR~~~v~~~--~~---~~~~~~l~~L~~~~ 369 (962)
-+++|+||.+..- +... ..++...+.. ...|.-||-.|-..++... .. -....-++.-+.+|
T Consensus 604 aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~e 683 (802)
T KOG0733|consen 604 APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEE 683 (802)
T ss_pred CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHH
Confidence 7899999998321 1111 1222223321 2245566666666554332 12 22345567777888
Q ss_pred HHHHHHHhhcCCCCC-CCCcchHHHHHHHHHhcCCC
Q 038637 370 CLRVVIQHSLGATGF-STNQSLKDVGEKIAKKCKGL 404 (962)
Q Consensus 370 ~~~Lf~~~a~~~~~~-~~~~~~~~~~~~I~~~c~gl 404 (962)
-.++++...-..... ..+-++.++++. .+|.|+
T Consensus 684 R~~ILK~~tkn~k~pl~~dVdl~eia~~--~~c~gf 717 (802)
T KOG0733|consen 684 RVAILKTITKNTKPPLSSDVDLDEIARN--TKCEGF 717 (802)
T ss_pred HHHHHHHHhccCCCCCCcccCHHHHhhc--ccccCC
Confidence 888888776421111 233456666553 355554
No 376
>PRK04040 adenylate kinase; Provisional
Probab=93.75 E-value=0.047 Score=54.11 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCchHHHHHHHHhC
Q 038637 228 FSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
..+|.|+|++|+||||+++.+..
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~ 24 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALE 24 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHH
Confidence 36899999999999999999987
No 377
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=93.74 E-value=0.33 Score=50.07 Aligned_cols=41 Identities=17% Similarity=0.169 Sum_probs=29.9
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCC
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSED 269 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~ 269 (962)
.-.++.|.|.+|+||||+|.++.... . ..-..++|++....
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~-~-~~g~~~~~is~e~~ 59 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKG-L-RDGDPVIYVTTEES 59 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHH-H-hcCCeEEEEEccCC
Confidence 56899999999999999998876532 1 22346778876443
No 378
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=93.74 E-value=0.22 Score=51.76 Aligned_cols=90 Identities=18% Similarity=0.181 Sum_probs=54.1
Q ss_pred cEEEEEEcCCCchHHHHHHHHhCccch--hcccceEEEEEeCCCC-CHHHHHHHHHHHhccCC------CCCCccHHH--
Q 038637 228 FSVISINGMGGVGKTTLAQLVYNDDRV--QRHFQFKAWACVSEDF-DVFRVTKSILKSIANDQ------SNNDDDLNL-- 296 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~~~~~--~~~F~~~~wv~v~~~~-~~~~~~~~il~~l~~~~------~~~~~~~~~-- 296 (962)
-.-++|.|..|+|||+|+.++.+.... +.+-+..+++-+++.. +..++..++.+.=.... ..+......
T Consensus 69 GQR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~ 148 (276)
T cd01135 69 GQKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERII 148 (276)
T ss_pred CCEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHH
Confidence 345799999999999999998875321 1234677888888765 45555555544311111 001111111
Q ss_pred ---HHHHHHhHh---CCceEEEEEecC
Q 038637 297 ---LQEKLKKQL---SGNKFLLVLDDV 317 (962)
Q Consensus 297 ---~~~~l~~~l---~~kr~LlVlDdv 317 (962)
..-.+.+++ +++++|+++||+
T Consensus 149 a~~~a~aiAEyfrd~~g~~VLl~~D~l 175 (276)
T cd01135 149 TPRMALTTAEYLAYEKGKHVLVILTDM 175 (276)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEcCh
Confidence 122334444 378999999998
No 379
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.73 E-value=0.066 Score=51.72 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=22.5
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
...+++|+|..|+|||||++.+...
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 5679999999999999999999863
No 380
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.69 E-value=0.27 Score=51.53 Aligned_cols=90 Identities=14% Similarity=0.092 Sum_probs=46.5
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCC-CHHHHHHHHHHHhccCCCCCCccHHHHHHHHHhHh
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDF-DVFRVTKSILKSIANDQSNNDDDLNLLQEKLKKQL 305 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 305 (962)
+..++.++|.+|+||||+++.+.... ...=..+.+++..... ....-++...+.++-+.. ...+...+.+.+...-
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l--~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~-~~~~~~~l~~~l~~l~ 150 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQF--HGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVI-AVRDEAAMTRALTYFK 150 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHH--HHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEE-ecCCHHHHHHHHHHHH
Confidence 34699999999999999998886632 2111234455543221 111222222333332211 2234445555544332
Q ss_pred C-CceEEEEEecCCC
Q 038637 306 S-GNKFLLVLDDVWN 319 (962)
Q Consensus 306 ~-~kr~LlVlDdv~~ 319 (962)
+ .+.=++++|..-.
T Consensus 151 ~~~~~D~ViIDt~Gr 165 (270)
T PRK06731 151 EEARVDYILIDTAGK 165 (270)
T ss_pred hcCCCCEEEEECCCC
Confidence 2 2345788888743
No 381
>PTZ00185 ATPase alpha subunit; Provisional
Probab=93.69 E-value=0.31 Score=54.73 Aligned_cols=89 Identities=18% Similarity=0.208 Sum_probs=53.5
Q ss_pred cEEEEEEcCCCchHHHHH-HHHhCccch-----hcccceEEEEEeCCCCCHHHHHHHHHHHhcc-CCC------CCCccH
Q 038637 228 FSVISINGMGGVGKTTLA-QLVYNDDRV-----QRHFQFKAWACVSEDFDVFRVTKSILKSIAN-DQS------NNDDDL 294 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa-~~v~~~~~~-----~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~-~~~------~~~~~~ 294 (962)
-.-++|.|..|+|||+|| ..+.+...+ ..+-+..+++-+++..+...-+.+.+++-+. +.. .+....
T Consensus 189 GQR~lIfGd~GtGKTtLAld~IinQ~~~~~~~~~~~~~v~VyvaIGeR~rEV~ei~~~L~e~GaL~~TvVV~AtAdep~~ 268 (574)
T PTZ00185 189 GQRELIVGDRQTGKTSIAVSTIINQVRINQQILSKNAVISIYVSIGQRCSNVARIHRLLRSYGALRYTTVMAATAAEPAG 268 (574)
T ss_pred CCEEEeecCCCCChHHHHHHHHHhhhhhccccccCCCCEEEEEEeccchHHHHHHHHHHHhcCCccceEEEEECCCCCHH
Confidence 356799999999999997 666664322 1234567888888876544435555555431 110 011111
Q ss_pred ---------HHHHHHHHhHhCCceEEEEEecCC
Q 038637 295 ---------NLLQEKLKKQLSGNKFLLVLDDVW 318 (962)
Q Consensus 295 ---------~~~~~~l~~~l~~kr~LlVlDdv~ 318 (962)
-.+.+.+++ +++..|+|+||+.
T Consensus 269 ~r~~Apy~a~tiAEYFrd--~GkdVLiv~DDLT 299 (574)
T PTZ00185 269 LQYLAPYSGVTMGEYFMN--RGRHCLCVYDDLS 299 (574)
T ss_pred HHHHHHHHHHHHHHHHHH--cCCCEEEEEcCch
Confidence 123334443 5899999999983
No 382
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.65 E-value=0.32 Score=54.24 Aligned_cols=24 Identities=33% Similarity=0.310 Sum_probs=21.2
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhC
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
...+++++|+.|+||||++..+..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~ 213 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAA 213 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999987765
No 383
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.65 E-value=0.31 Score=55.51 Aligned_cols=83 Identities=19% Similarity=0.187 Sum_probs=47.9
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHhccCCCC----CCccHHHHHHHHH
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSIANDQSN----NDDDLNLLQEKLK 302 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~~~~~l~ 302 (962)
.-.++.|.|.+|+|||||+.+++... ...-..++|++..+.+ .++.. -++.++.+... ...+.+.+.+.+.
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~--a~~g~~vlYvs~Ees~--~qi~~-ra~rlg~~~~~l~~~~e~~l~~i~~~i~ 153 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARL--AAAGGKVLYVSGEESA--SQIKL-RAERLGLPSDNLYLLAETNLEAILATIE 153 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEEccccH--HHHHH-HHHHcCCChhcEEEeCCCCHHHHHHHHH
Confidence 45799999999999999999987742 2222356787765433 33322 23444432211 1233444444443
Q ss_pred hHhCCceEEEEEecC
Q 038637 303 KQLSGNKFLLVLDDV 317 (962)
Q Consensus 303 ~~l~~kr~LlVlDdv 317 (962)
+ .+.-++|+|.+
T Consensus 154 ~---~~~~lVVIDSI 165 (446)
T PRK11823 154 E---EKPDLVVIDSI 165 (446)
T ss_pred h---hCCCEEEEech
Confidence 2 34457888887
No 384
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.64 E-value=0.0027 Score=61.99 Aligned_cols=86 Identities=16% Similarity=0.227 Sum_probs=74.0
Q ss_pred hCCCCcccEEEeCCCcCcccccccccCCCcCCeEeccCCCCccccccccccccCcEEeeCCCccccccchhcccCCCccE
Q 038637 611 LNHLPRLRVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLENCWELKKLCKDMGNLTKLRH 690 (962)
Q Consensus 611 l~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 690 (962)
+..++..++||++.| .+..+-..+.-+..|..|+++.|.+..+|+.++.+..+..+++..| .....|.+.+.++++++
T Consensus 38 i~~~kr~tvld~~s~-r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSN-RLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKSQKKEPHPKK 115 (326)
T ss_pred hhccceeeeehhhhh-HHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCccccccCCcch
Confidence 456788899999988 6777777788888899999999999999999999999999998877 78889999999999999
Q ss_pred EecCCCCC
Q 038637 691 LRNSDAGL 698 (962)
Q Consensus 691 L~l~~~~~ 698 (962)
++..++.+
T Consensus 116 ~e~k~~~~ 123 (326)
T KOG0473|consen 116 NEQKKTEF 123 (326)
T ss_pred hhhccCcc
Confidence 99888764
No 385
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=93.61 E-value=0.11 Score=51.31 Aligned_cols=42 Identities=21% Similarity=0.278 Sum_probs=31.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhC
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
++++|.+..+..+.-.... ..-+.++|++|+|||++|+.+..
T Consensus 3 ~dI~GQe~aKrAL~iAAaG--------~h~lLl~GppGtGKTmlA~~l~~ 44 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAG--------GHHLLLIGPPGTGKTMLARRLPS 44 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHC--------C--EEEES-CCCTHHHHHHHHHH
T ss_pred hhhcCcHHHHHHHHHHHcC--------CCCeEEECCCCCCHHHHHHHHHH
Confidence 4688998888877666642 35789999999999999999864
No 386
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=93.60 E-value=0.27 Score=55.82 Aligned_cols=117 Identities=25% Similarity=0.368 Sum_probs=66.2
Q ss_pred cEEEEEEcCCCchHHH-HHHHHhCccchhcccceEEEEEeCCC--CCHHHHHHHHHHHhccCCCC------------C--
Q 038637 228 FSVISINGMGGVGKTT-LAQLVYNDDRVQRHFQFKAWACVSED--FDVFRVTKSILKSIANDQSN------------N-- 290 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTt-La~~v~~~~~~~~~F~~~~wv~v~~~--~~~~~~~~~il~~l~~~~~~------------~-- 290 (962)
-.||.|+|..|.|||| ||+.+|.+- |...--+-+.++ .....+.+.+.++++..-.. .
T Consensus 371 n~vvvivgETGSGKTTQl~QyL~edG-----Y~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEdvT~~~ 445 (1042)
T KOG0924|consen 371 NQVVVIVGETGSGKTTQLAQYLYEDG-----YADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFEDVTSED 445 (1042)
T ss_pred CcEEEEEecCCCCchhhhHHHHHhcc-----cccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEEEeeecCCCc
Confidence 4799999999999999 888888752 211112334443 33456677777777543210 0
Q ss_pred -----CccHHHHHHHHHhHhCCceEEEEEecCCCCCcc--c-hhhccCCCCCCCCCcEEEEEecChhh
Q 038637 291 -----DDDLNLLQEKLKKQLSGNKFLLVLDDVWNKNYN--Y-WSILSCPFGAGAPGSKIVVTTRNLDV 350 (962)
Q Consensus 291 -----~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~--~-~~~l~~~l~~~~~gs~ilvTtR~~~v 350 (962)
-.+.--+.+.|.+..-+|=-.||+|.+.+.+.. . ...+...+ .....-|+||||-..+.
T Consensus 446 T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~l-arRrdlKliVtSATm~a 512 (1042)
T KOG0924|consen 446 TKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVL-ARRRDLKLIVTSATMDA 512 (1042)
T ss_pred eeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHH-HhhccceEEEeeccccH
Confidence 012223444454444455568999999764321 1 11112122 22356799999977544
No 387
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=93.59 E-value=0.12 Score=60.25 Aligned_cols=46 Identities=20% Similarity=0.153 Sum_probs=34.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhC
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
..++|....+.++++.+..... .-.-|.|+|..|+||+++|+.+..
T Consensus 204 ~~~ig~s~~~~~~~~~~~~~A~----~~~pvlI~GE~GtGK~~lA~aiH~ 249 (520)
T PRK10820 204 SQIVAVSPKMRQVVEQARKLAM----LDAPLLITGDTGTGKDLLAYACHL 249 (520)
T ss_pred cceeECCHHHHHHHHHHHHHhC----CCCCEEEECCCCccHHHHHHHHHH
Confidence 4588998888888877753221 123478999999999999999875
No 388
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=93.56 E-value=0.17 Score=56.55 Aligned_cols=86 Identities=20% Similarity=0.250 Sum_probs=48.3
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHhccC-----CCCCCccH-------
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSIAND-----QSNNDDDL------- 294 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~-----~~~~~~~~------- 294 (962)
.-..++|+|..|+|||||++.+..... ....+++..--..-+..++....+...... ...+....
T Consensus 164 ~Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~ 240 (450)
T PRK06002 164 AGQRIGIFAGSGVGKSTLLAMLARADA---FDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPL 240 (450)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC---CCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHH
Confidence 346789999999999999998886321 222344443223445555544444433111 11011111
Q ss_pred --HHHHHHHHhHhCCceEEEEEecC
Q 038637 295 --NLLQEKLKKQLSGNKFLLVLDDV 317 (962)
Q Consensus 295 --~~~~~~l~~~l~~kr~LlVlDdv 317 (962)
-.+.+.+++ +++.+|+++||+
T Consensus 241 ~a~~iAEyfrd--~G~~Vll~~Dsl 263 (450)
T PRK06002 241 TATAIAEYFRD--RGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHHHH--cCCCEEEeccch
Confidence 122333343 589999999998
No 389
>PRK15453 phosphoribulokinase; Provisional
Probab=93.55 E-value=0.29 Score=50.92 Aligned_cols=79 Identities=13% Similarity=0.156 Sum_probs=44.0
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhCccchhcccce-EEEEEeCC--CCCHHHHHHHHH--HHhccCCC---CCCccHHHH
Q 038637 226 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQF-KAWACVSE--DFDVFRVTKSIL--KSIANDQS---NNDDDLNLL 297 (962)
Q Consensus 226 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~-~~wv~v~~--~~~~~~~~~~il--~~l~~~~~---~~~~~~~~~ 297 (962)
.+..+|+|.|.+|+||||+|+.+... .. +... .+.++... .++...+-..+. +.-+.... ..+.+.+.+
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~i--f~-~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL 79 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKI--FR-RENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDEL 79 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH--Hh-hcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHH
Confidence 35689999999999999999988752 21 1121 22333222 123333322221 12221111 256677888
Q ss_pred HHHHHhHhCC
Q 038637 298 QEKLKKQLSG 307 (962)
Q Consensus 298 ~~~l~~~l~~ 307 (962)
.+.++...++
T Consensus 80 ~~~l~~l~~~ 89 (290)
T PRK15453 80 EQLFREYGET 89 (290)
T ss_pred HHHHHHHhcC
Confidence 8888876653
No 390
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=93.55 E-value=0.51 Score=51.08 Aligned_cols=97 Identities=23% Similarity=0.232 Sum_probs=58.8
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHhccCCCC
Q 038637 210 EEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSIANDQSN 289 (962)
Q Consensus 210 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~ 289 (962)
..++-..|-..-. .-.+|.|-|.+|+|||||.-++..+ ....- .+.+|+-.+.. .++ +--++.++....+
T Consensus 79 ~~EldRVLGGG~V----~Gs~iLIgGdPGIGKSTLLLQva~~--lA~~~-~vLYVsGEES~--~Qi-klRA~RL~~~~~~ 148 (456)
T COG1066 79 IEELDRVLGGGLV----PGSVILIGGDPGIGKSTLLLQVAAR--LAKRG-KVLYVSGEESL--QQI-KLRADRLGLPTNN 148 (456)
T ss_pred hHHHHhhhcCCcc----cccEEEEccCCCCCHHHHHHHHHHH--HHhcC-cEEEEeCCcCH--HHH-HHHHHHhCCCccc
Confidence 4445555533322 4579999999999999999988873 33333 56677554443 222 2234555543322
Q ss_pred ----CCccHHHHHHHHHhHhCCceEEEEEecCCC
Q 038637 290 ----NDDDLNLLQEKLKKQLSGNKFLLVLDDVWN 319 (962)
Q Consensus 290 ----~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 319 (962)
...+.+.+.+.+.+ .+.-++|+|-+..
T Consensus 149 l~l~aEt~~e~I~~~l~~---~~p~lvVIDSIQT 179 (456)
T COG1066 149 LYLLAETNLEDIIAELEQ---EKPDLVVIDSIQT 179 (456)
T ss_pred eEEehhcCHHHHHHHHHh---cCCCEEEEeccce
Confidence 33455555554443 6788999999843
No 391
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=93.54 E-value=0.35 Score=51.23 Aligned_cols=131 Identities=23% Similarity=0.303 Sum_probs=69.1
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCcc-chhcccceEE----EEEeCCCC-----C---
Q 038637 205 GREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDD-RVQRHFQFKA----WACVSEDF-----D--- 271 (962)
Q Consensus 205 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~-~~~~~F~~~~----wv~v~~~~-----~--- 271 (962)
+|..+..--+++|+. +.+..|.+.|.+|.|||.||-+..-.. ..+..|...+ -+.+++.. .
T Consensus 228 prn~eQ~~ALdlLld------~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEe 301 (436)
T COG1875 228 PRNAEQRVALDLLLD------DDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEE 301 (436)
T ss_pred cccHHHHHHHHHhcC------CCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhh
Confidence 455555556677754 467999999999999999986553221 2233343322 23333321 1
Q ss_pred -H---HHHHHHHHHHhccCCCCCCccHHHHHHHH---------HhHhCCc---eEEEEEecCCCCCccchhhccCCCCCC
Q 038637 272 -V---FRVTKSILKSIANDQSNNDDDLNLLQEKL---------KKQLSGN---KFLLVLDDVWNKNYNYWSILSCPFGAG 335 (962)
Q Consensus 272 -~---~~~~~~il~~l~~~~~~~~~~~~~~~~~l---------~~~l~~k---r~LlVlDdv~~~~~~~~~~l~~~l~~~ 335 (962)
+ .+-.-+-++.+....... .+.+...+ -.+.+|+ +-+||+|...+-...+.. ..+...
T Consensus 302 Km~PWmq~i~DnLE~L~~~~~~~---~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheik---TiltR~ 375 (436)
T COG1875 302 KMGPWMQAIFDNLEVLFSPNEPG---DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELK---TILTRA 375 (436)
T ss_pred hccchHHHHHhHHHHHhcccccc---hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHH---HHHHhc
Confidence 1 111222233333322111 12222221 1222343 458999999775544443 334456
Q ss_pred CCCcEEEEEecC
Q 038637 336 APGSKIVVTTRN 347 (962)
Q Consensus 336 ~~gs~ilvTtR~ 347 (962)
+.|||||.|--.
T Consensus 376 G~GsKIVl~gd~ 387 (436)
T COG1875 376 GEGSKIVLTGDP 387 (436)
T ss_pred cCCCEEEEcCCH
Confidence 799999998743
No 392
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.52 E-value=0.042 Score=55.30 Aligned_cols=21 Identities=43% Similarity=0.659 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHhC
Q 038637 230 VISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 230 vi~I~G~~GiGKTtLa~~v~~ 250 (962)
+|+|.|+.|+||||||+.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999876
No 393
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=93.51 E-value=0.14 Score=52.29 Aligned_cols=122 Identities=16% Similarity=0.150 Sum_probs=66.2
Q ss_pred cEEEEEEcCCCchHHHHHHHHhCccc-hhc---c-------c---ceEEEEEeCCCC------CH---------------
Q 038637 228 FSVISINGMGGVGKTTLAQLVYNDDR-VQR---H-------F---QFKAWACVSEDF------DV--------------- 272 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~~~~-~~~---~-------F---~~~~wv~v~~~~------~~--------------- 272 (962)
-.+++|+|+.|.|||||.+.+.--.+ .++ . + ..+.||.=...+ +.
T Consensus 30 G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~ 109 (254)
T COG1121 30 GEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWF 109 (254)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccc
Confidence 37899999999999999999976211 000 0 1 123343210011 11
Q ss_pred -------HHHHHHHHHHhccCCCC----CCccHHHHH-HHHHhHhCCceEEEEEecCCC----CCccchhhccCCCCCCC
Q 038637 273 -------FRVTKSILKSIANDQSN----NDDDLNLLQ-EKLKKQLSGNKFLLVLDDVWN----KNYNYWSILSCPFGAGA 336 (962)
Q Consensus 273 -------~~~~~~il~~l~~~~~~----~~~~~~~~~-~~l~~~l~~kr~LlVlDdv~~----~~~~~~~~l~~~l~~~~ 336 (962)
.+...+.+++++...-. ..-+..+.+ -.|.+.|..+.=|++||.--. ......-.+...+..
T Consensus 110 ~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~-- 187 (254)
T COG1121 110 RRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ-- 187 (254)
T ss_pred ccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHH--
Confidence 24455556665543211 122223333 346677888899999998522 111222223333332
Q ss_pred CCcEEEEEecChhhH
Q 038637 337 PGSKIVVTTRNLDVA 351 (962)
Q Consensus 337 ~gs~ilvTtR~~~v~ 351 (962)
.|..||++|-+-...
T Consensus 188 eg~tIl~vtHDL~~v 202 (254)
T COG1121 188 EGKTVLMVTHDLGLV 202 (254)
T ss_pred CCCEEEEEeCCcHHh
Confidence 388899999885543
No 394
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=93.46 E-value=0.083 Score=48.24 Aligned_cols=72 Identities=15% Similarity=0.134 Sum_probs=42.1
Q ss_pred cEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCccHHHHHHHHHhHhCC
Q 038637 228 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSIANDQSNNDDDLNLLQEKLKKQLSG 307 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 307 (962)
.+-|.|.|-+|+||||+|.+++.-. . .-|+++|+-..-..+... ..........|.+.+.+.|...+.+
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~----~---~~~i~isd~vkEn~l~~g----yDE~y~c~i~DEdkv~D~Le~~m~~ 75 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKT----G---LEYIEISDLVKENNLYEG----YDEEYKCHILDEDKVLDELEPLMIE 75 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHh----C---CceEehhhHHhhhcchhc----ccccccCccccHHHHHHHHHHHHhc
Confidence 4568899999999999999998521 1 236666553322222211 1111112445667777777776655
Q ss_pred ceE
Q 038637 308 NKF 310 (962)
Q Consensus 308 kr~ 310 (962)
-.+
T Consensus 76 Gg~ 78 (176)
T KOG3347|consen 76 GGN 78 (176)
T ss_pred CCc
Confidence 333
No 395
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.45 E-value=0.058 Score=53.30 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.5
Q ss_pred EEEEEEcCCCchHHHHHHHHhCc
Q 038637 229 SVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
.++.|+|+.|+|||||++.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998764
No 396
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=93.45 E-value=0.3 Score=47.04 Aligned_cols=119 Identities=16% Similarity=0.098 Sum_probs=59.7
Q ss_pred cEEEEEEcCCCchHHHHHHHHhCccchhcc-cceE--EEEEeCCCCCHHHHHHHHHHH---hccCC----CCCCcc---H
Q 038637 228 FSVISINGMGGVGKTTLAQLVYNDDRVQRH-FQFK--AWACVSEDFDVFRVTKSILKS---IANDQ----SNNDDD---L 294 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~-F~~~--~wv~v~~~~~~~~~~~~il~~---l~~~~----~~~~~~---~ 294 (962)
...|-|++..|.||||.|-.+.- +...+ +... -|+.-.........+....-. .+... .....+ .
T Consensus 5 ~Gli~v~~g~GkGKtt~a~g~a~--ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~ 82 (173)
T TIGR00708 5 RGIIIVHTGNGKGKTTAAFGMAL--RALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIA 82 (173)
T ss_pred ccEEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHH
Confidence 36788888899999999976654 22222 2221 133322223333343332000 01100 001111 1
Q ss_pred HHHHHHHHhHhCCceE-EEEEecCCC---CCccchhhccCCCCCCCCCcEEEEEecCh
Q 038637 295 NLLQEKLKKQLSGNKF-LLVLDDVWN---KNYNYWSILSCPFGAGAPGSKIVVTTRNL 348 (962)
Q Consensus 295 ~~~~~~l~~~l~~kr~-LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 348 (962)
....+..++.+...+| |+|||.+-. -..-..+.+...+.....+.-||+|-|+.
T Consensus 83 ~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 83 KAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 2233444555554444 999999832 11223344555554445677999999984
No 397
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.41 E-value=0.33 Score=57.90 Aligned_cols=86 Identities=20% Similarity=0.174 Sum_probs=48.4
Q ss_pred cEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCC--HHHHHHHHHHHhccCCCCCCccHHHHHHHHHhHh
Q 038637 228 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFD--VFRVTKSILKSIANDQSNNDDDLNLLQEKLKKQL 305 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~--~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 305 (962)
.+|+.++|+.|+||||.+..++........-..+..++.. .+. ..+-++...+.++.+.. ...+...+.+.+.+ +
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~D-t~RigA~eQL~~~a~~~gvpv~-~~~~~~~l~~al~~-~ 261 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTD-SFRIGALEQLRIYGRILGVPVH-AVKDAADLRFALAA-L 261 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCc-ccchHHHHHHHHHHHhCCCCcc-ccCCHHHHHHHHHH-h
Confidence 5799999999999999988887643211111233444432 232 33445555555554433 23345555555543 3
Q ss_pred CCceEEEEEecC
Q 038637 306 SGNKFLLVLDDV 317 (962)
Q Consensus 306 ~~kr~LlVlDdv 317 (962)
+++. +|++|-.
T Consensus 262 ~~~D-~VLIDTA 272 (767)
T PRK14723 262 GDKH-LVLIDTV 272 (767)
T ss_pred cCCC-EEEEeCC
Confidence 4443 6666765
No 398
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=93.39 E-value=0.42 Score=54.47 Aligned_cols=96 Identities=18% Similarity=0.149 Sum_probs=52.0
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHhccCCCC
Q 038637 210 EEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSIANDQSN 289 (962)
Q Consensus 210 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~ 289 (962)
+.++-+.|...- ..-.++.|.|.+|+|||||+.++.... ...-..++|++..+. ..++.. -++.++.....
T Consensus 80 i~~LD~vLgGGi----~~GsvilI~G~pGsGKTTL~lq~a~~~--a~~g~kvlYvs~EEs--~~qi~~-ra~rlg~~~~~ 150 (454)
T TIGR00416 80 FGELDRVLGGGI----VPGSLILIGGDPGIGKSTLLLQVACQL--AKNQMKVLYVSGEES--LQQIKM-RAIRLGLPEPN 150 (454)
T ss_pred cHHHHHHhcCCc----cCCeEEEEEcCCCCCHHHHHHHHHHHH--HhcCCcEEEEECcCC--HHHHHH-HHHHcCCChHH
Confidence 344555553332 356899999999999999999886632 222135678765543 333222 12333322110
Q ss_pred ----CCccHHHHHHHHHhHhCCceEEEEEecC
Q 038637 290 ----NDDDLNLLQEKLKKQLSGNKFLLVLDDV 317 (962)
Q Consensus 290 ----~~~~~~~~~~~l~~~l~~kr~LlVlDdv 317 (962)
...+.+.+.+.+.+ .+.-++|+|.+
T Consensus 151 l~~~~e~~~~~I~~~i~~---~~~~~vVIDSI 179 (454)
T TIGR00416 151 LYVLSETNWEQICANIEE---ENPQACVIDSI 179 (454)
T ss_pred eEEcCCCCHHHHHHHHHh---cCCcEEEEecc
Confidence 22334444444432 24457888877
No 399
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=93.38 E-value=0.19 Score=49.20 Aligned_cols=24 Identities=38% Similarity=0.480 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCchHHHHHHHHhCc
Q 038637 228 FSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
-.+++|+|+.|.|||||.+.+..-
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~ 51 (173)
T cd03246 28 GESLAIIGPSGSGKSTLARLILGL 51 (173)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 358999999999999999999863
No 400
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=93.36 E-value=0.3 Score=54.80 Aligned_cols=89 Identities=25% Similarity=0.270 Sum_probs=53.1
Q ss_pred cEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCC-CHHHHHHHHHHHhccCC------CCCCccHH-----
Q 038637 228 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDF-DVFRVTKSILKSIANDQ------SNNDDDLN----- 295 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~~~~~il~~l~~~~------~~~~~~~~----- 295 (962)
-.-++|.|.+|+|||||+.++...... .+=+..+++-+++.. ...+++.+++..=.... ..+.....
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~-~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~ 222 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAK-EHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVA 222 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHh-cCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHH
Confidence 456799999999999999988664221 111356777777664 45556666654321111 00111111
Q ss_pred HHHHHHHhHh---CCceEEEEEecC
Q 038637 296 LLQEKLKKQL---SGNKFLLVLDDV 317 (962)
Q Consensus 296 ~~~~~l~~~l---~~kr~LlVlDdv 317 (962)
...-.+.+++ +++.+|+++||+
T Consensus 223 ~~a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 223 LTGLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHHHhcCCceEEEecch
Confidence 1223344555 679999999999
No 401
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.32 E-value=0.39 Score=53.61 Aligned_cols=25 Identities=32% Similarity=0.351 Sum_probs=21.8
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhC
Q 038637 226 DGFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 226 ~~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
....+|.++|+.|+||||+|..++.
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~ 122 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAY 122 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3478999999999999999988775
No 402
>PRK00889 adenylylsulfate kinase; Provisional
Probab=93.31 E-value=0.078 Score=52.14 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
...+|.|+|++|+||||+|+.+...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~ 27 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEK 27 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4469999999999999999999873
No 403
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=93.30 E-value=2.2 Score=42.71 Aligned_cols=189 Identities=17% Similarity=0.178 Sum_probs=94.4
Q ss_pred cccc-chhhHHHHHHHHhcCCCC-------CCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHH
Q 038637 202 EVYG-REKEEEEIVELLLNDGLR-------ADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVF 273 (962)
Q Consensus 202 ~~vG-r~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 273 (962)
++|| .|..+.+|.+.+.-.... +-.+++=+.++|++|.|||-||++|+.+. +..|+.||..
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht-------~c~firvsgs---- 215 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-------DCTFIRVSGS---- 215 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc-------ceEEEEechH----
Confidence 3555 677777777766432110 12356778899999999999999998742 3445656543
Q ss_pred HHHHHHHHHhccCCCCCCccHHHHHHHHHhHh-CCceEEEEEecCCCCC-----------ccc---hhhccCCCC--CCC
Q 038637 274 RVTKSILKSIANDQSNNDDDLNLLQEKLKKQL-SGNKFLLVLDDVWNKN-----------YNY---WSILSCPFG--AGA 336 (962)
Q Consensus 274 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~-----------~~~---~~~l~~~l~--~~~ 336 (962)
++.+..-+.. .....++.-.. ..-+-.|+.|.+.+-. .+. .-++...+. ...
T Consensus 216 ----elvqk~igeg-------srmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeat 284 (404)
T KOG0728|consen 216 ----ELVQKYIGEG-------SRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEAT 284 (404)
T ss_pred ----HHHHHHhhhh-------HHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccc
Confidence 1112111110 11111121111 2345567777763310 000 011112222 123
Q ss_pred CCcEEEEEecChhhHhh-----hCCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHHHHH
Q 038637 337 PGSKIVVTTRNLDVANL-----TRAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAAKTL 411 (962)
Q Consensus 337 ~gs~ilvTtR~~~v~~~-----~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~ 411 (962)
+.-+||+.|..-++... ......++.++-+++.-.++++-+.-.- +....-.+..+|+++....|.---++-+=
T Consensus 285 knikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkm-nl~rgi~l~kiaekm~gasgaevk~vcte 363 (404)
T KOG0728|consen 285 KNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKM-NLTRGINLRKIAEKMPGASGAEVKGVCTE 363 (404)
T ss_pred cceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhh-chhcccCHHHHHHhCCCCccchhhhhhhh
Confidence 55678887766544332 1234567888888888788876654221 11222345555555544333333344444
Q ss_pred Hh
Q 038637 412 GG 413 (962)
Q Consensus 412 ~~ 413 (962)
|+
T Consensus 364 ag 365 (404)
T KOG0728|consen 364 AG 365 (404)
T ss_pred hh
Confidence 44
No 404
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.30 E-value=0.24 Score=48.40 Aligned_cols=24 Identities=33% Similarity=0.414 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCchHHHHHHHHhCc
Q 038637 228 FSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
-.+++|+|+.|.|||||.+.++.-
T Consensus 28 G~~~~l~G~nGsGKstLl~~i~G~ 51 (171)
T cd03228 28 GEKVAIVGPSGSGKSTLLKLLLRL 51 (171)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 468999999999999999999874
No 405
>PRK00131 aroK shikimate kinase; Reviewed
Probab=93.22 E-value=0.062 Score=52.79 Aligned_cols=24 Identities=29% Similarity=0.419 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCchHHHHHHHHhCc
Q 038637 228 FSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
...|.|+|++|+||||+|+.++..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999999999873
No 406
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.21 E-value=0.0089 Score=57.59 Aligned_cols=61 Identities=20% Similarity=0.413 Sum_probs=25.9
Q ss_pred CCCcceeeccccccccccccccCCccccCcCCccceEeEccCCCccccCC---CCCCCcceEEEcccc
Q 038637 875 FPSLETLSFSDMREWEEWISCGAGQEVDEVFPKLRKLSLFNCYKLQGTLP---KRLLLLEKLVIKSCH 939 (962)
Q Consensus 875 f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~lp---~~l~~L~~L~i~~c~ 939 (962)
+++++.|.+.+|..+.+|.. ....+..|+|+.|+|++||.++..-- ..+++|+.|.|.+.+
T Consensus 124 l~~i~~l~l~~ck~~dD~~L----~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 124 LRSIKSLSLANCKYFDDWCL----ERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLP 187 (221)
T ss_pred cchhhhheeccccchhhHHH----HHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCch
Confidence 34444444444444444433 11122345555555555555542100 223445555544443
No 407
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.20 E-value=0.057 Score=29.83 Aligned_cols=16 Identities=50% Similarity=0.831 Sum_probs=5.5
Q ss_pred cCCeEeccCCCCcccc
Q 038637 640 HLRCLNLSRTRIQILP 655 (962)
Q Consensus 640 ~Lr~L~Ls~~~i~~lp 655 (962)
+|+.|+|++|+++.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 3444444444444433
No 408
>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide. The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.
Probab=93.19 E-value=0.19 Score=51.68 Aligned_cols=54 Identities=19% Similarity=0.253 Sum_probs=45.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhhc-ccCChHHHHHHHHHHHHHhhhhhhhhhhh
Q 038637 34 LKADFIKWKGMLEMIRAVLADAEDR-RTKEKSVKMWLDNLQNLAYDLEDILDEFQ 87 (962)
Q Consensus 34 ~~~~~~~l~~~l~~i~~~l~~a~~~-~~~~~~~~~wl~~lr~~ayd~eD~lD~~~ 87 (962)
++.+++-+|.+++.+|.||+..... ...-+..+.++.++-..||++|.++|-+.
T Consensus 319 lKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~~ed~a~~ii~kAyevEYVVDaCi 373 (402)
T PF12061_consen 319 LKNQIQVIQTELESLQPFLKHVVEEPHNKHDTNEDCATQIIRKAYEVEYVVDACI 373 (402)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhccchhhhhhhhHHHHHHHHHhheeeeeehhh
Confidence 5789999999999999999987443 33323389999999999999999999973
No 409
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=93.19 E-value=0.056 Score=53.61 Aligned_cols=22 Identities=27% Similarity=0.362 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHhCc
Q 038637 230 VISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 230 vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
+|.|+|++|+||||+|+.+...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999763
No 410
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=93.18 E-value=0.17 Score=52.10 Aligned_cols=52 Identities=19% Similarity=0.300 Sum_probs=38.3
Q ss_pred CccccchhhHHHHHHHHhcCCC-CCCCCcEEEEEEcCCCchHHHHHHHHhCcc
Q 038637 201 AEVYGREKEEEEIVELLLNDGL-RADDGFSVISINGMGGVGKTTLAQLVYNDD 252 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~-~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~ 252 (962)
..++|..-.++.|+..+.+--. ....++-+++.+|..|.||.-.++.++++.
T Consensus 82 ~~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~ 134 (344)
T KOG2170|consen 82 RALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENL 134 (344)
T ss_pred HHhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHH
Confidence 3467877777777776653211 124678899999999999999999988753
No 411
>PRK08149 ATP synthase SpaL; Validated
Probab=93.17 E-value=0.25 Score=55.03 Aligned_cols=87 Identities=16% Similarity=0.276 Sum_probs=50.6
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCC-CCHHHHHHHHHHHhccCC------CCCCccHH----
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSED-FDVFRVTKSILKSIANDQ------SNNDDDLN---- 295 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~-~~~~~~~~~il~~l~~~~------~~~~~~~~---- 295 (962)
+-..++|+|..|+|||||++.++.... -+..+...+... -+..++..+.+....... ..+.....
T Consensus 150 ~Gq~i~I~G~sG~GKTTLl~~i~~~~~----~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a 225 (428)
T PRK08149 150 VGQRMGIFASAGCGKTSLMNMLIEHSE----ADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNA 225 (428)
T ss_pred cCCEEEEECCCCCChhHHHHHHhcCCC----CCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhH
Confidence 346789999999999999999987432 233334445443 345566666665432211 00111111
Q ss_pred -HHHHHHHhHh--CCceEEEEEecC
Q 038637 296 -LLQEKLKKQL--SGNKFLLVLDDV 317 (962)
Q Consensus 296 -~~~~~l~~~l--~~kr~LlVlDdv 317 (962)
.....+.+++ ++|++|+++||+
T Consensus 226 ~~~a~tiAE~fr~~G~~Vll~~Dsl 250 (428)
T PRK08149 226 ALVATTVAEYFRDQGKRVVLFIDSM 250 (428)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccch
Confidence 1222233333 589999999999
No 412
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=93.16 E-value=0.13 Score=60.70 Aligned_cols=75 Identities=16% Similarity=0.068 Sum_probs=55.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSIL 280 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 280 (962)
+.++|.++.++.|...+... +.+.++|++|.||||+|+.+.... ...+|+..+|..- ...+...+++.++
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--------~~~l~~G~~G~GKttla~~l~~~l-~~~~~~~~~~~~n-p~~~~~~~~~~v~ 100 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--------RHVMMIGSPGTGKSMLAKAMAELL-PKEELQDILVYPN-PEDPNNPKIRTVP 100 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--------CeEEEECCCCCcHHHHHHHHHHHc-ChHhHHHheEeeC-CCcchHHHHHHHH
Confidence 45889999988888777432 368899999999999999998742 2334677778655 3346777777777
Q ss_pred HHhcc
Q 038637 281 KSIAN 285 (962)
Q Consensus 281 ~~l~~ 285 (962)
.+++.
T Consensus 101 ~~~G~ 105 (637)
T PRK13765 101 AGKGK 105 (637)
T ss_pred HhcCH
Confidence 66654
No 413
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.15 E-value=0.053 Score=53.36 Aligned_cols=22 Identities=41% Similarity=0.626 Sum_probs=19.9
Q ss_pred EEEEEcCCCchHHHHHHHHhCc
Q 038637 230 VISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 230 vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
+|+|.|.+|+||||+|+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 414
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=93.12 E-value=0.21 Score=56.30 Aligned_cols=90 Identities=21% Similarity=0.195 Sum_probs=54.7
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCC-CHHHHHHHHHHHhccCC------CCCCccHH----
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDF-DVFRVTKSILKSIANDQ------SNNDDDLN---- 295 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~~~~~il~~l~~~~------~~~~~~~~---- 295 (962)
+-.-++|.|.+|+|||||+.++.+... +.+-+..+++-+++.. ...++..++...-.... ..+.....
T Consensus 142 kGQR~gIfa~~G~GKt~Ll~~~~~~~~-~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a 220 (461)
T PRK12597 142 KGGKTGLFGGAGVGKTVLMMELIFNIS-KQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRV 220 (461)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH-hhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHH
Confidence 345679999999999999988887432 2255777788777654 34455555544321111 00111111
Q ss_pred -HHHHHHHhHh---CCceEEEEEecC
Q 038637 296 -LLQEKLKKQL---SGNKFLLVLDDV 317 (962)
Q Consensus 296 -~~~~~l~~~l---~~kr~LlVlDdv 317 (962)
...-.+.+++ +++.+|+++||+
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 221 VLTGLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeccc
Confidence 1223344444 489999999999
No 415
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=93.09 E-value=0.13 Score=48.89 Aligned_cols=34 Identities=35% Similarity=0.521 Sum_probs=28.5
Q ss_pred hHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 209 EEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 209 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
.+++|.++|. + +++.++|..|+|||||+..+..+
T Consensus 25 g~~~l~~~l~--------~-k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 25 GIEELKELLK--------G-KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp THHHHHHHHT--------T-SEEEEECSTTSSHHHHHHHHHTS
T ss_pred CHHHHHHHhc--------C-CEEEEECCCCCCHHHHHHHHHhh
Confidence 4677888882 2 78999999999999999999875
No 416
>PTZ00494 tuzin-like protein; Provisional
Probab=93.08 E-value=0.9 Score=49.67 Aligned_cols=167 Identities=15% Similarity=0.156 Sum_probs=97.7
Q ss_pred cCCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHH
Q 038637 199 NEAEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKS 278 (962)
Q Consensus 199 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~ 278 (962)
....+|.|+.+-..+...|...+ ...++++.+.|.-|.||++|.+.....+.. ..++|++....| -++.
T Consensus 369 ~~~~~V~R~~eE~~vRqvL~qld---~aHPRIvV~TG~~GcGKSslcRsAvrkE~~-----paV~VDVRg~ED---tLrs 437 (664)
T PTZ00494 369 AEAFEVRREDEEALVRSVLTQMA---PSHPRIVALAGGSGGGRCVPCRRAVRVEGV-----ALVHVDVGGTED---TLRS 437 (664)
T ss_pred ccccccchhhHHHHHHHHHhhcc---CCCCcEEEEecCCCCCchHHHHHHHHHcCC-----CeEEEEecCCcc---hHHH
Confidence 45678999988877777776554 357899999999999999999988774322 356788877654 4778
Q ss_pred HHHHhccCCCCCCcc-HHHHHHHHHh---HhCCceEEEEEecCCCCC-ccchhhccCCCCCCCCCcEEEEEecChhhHhh
Q 038637 279 ILKSIANDQSNNDDD-LNLLQEKLKK---QLSGNKFLLVLDDVWNKN-YNYWSILSCPFGAGAPGSKIVVTTRNLDVANL 353 (962)
Q Consensus 279 il~~l~~~~~~~~~~-~~~~~~~l~~---~l~~kr~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~ 353 (962)
|++.++.+.-..-.| ++-+.+..+. ...++.-+||+-==...+ .-.+.+.. .|.....-+.|++----+.+...
T Consensus 438 VVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~v-aLacDrRlCHvv~EVplESLT~~ 516 (664)
T PTZ00494 438 VVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEVV-SLVSDCQACHIVLAVPMKALTPL 516 (664)
T ss_pred HHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHHH-HHHccchhheeeeechHhhhchh
Confidence 888888765322222 2333333332 234566666663211110 01111111 12222244566654433322211
Q ss_pred hC---CCCcccCCCCCHHHHHHHHHHh
Q 038637 354 TR---AYPKYGLKELSDDDCLRVVIQH 377 (962)
Q Consensus 354 ~~---~~~~~~l~~L~~~~~~~Lf~~~ 377 (962)
.. -..-|.++.++.++|.++....
T Consensus 517 n~~LPRLDFy~VPnFSr~QAf~YtqH~ 543 (664)
T PTZ00494 517 NVSSRRLDFYCIPPFSRRQAFAYAEHT 543 (664)
T ss_pred hccCccceeEecCCcCHHHHHHHHhcc
Confidence 11 1235788999999998877553
No 417
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=93.07 E-value=0.25 Score=50.94 Aligned_cols=77 Identities=17% Similarity=0.185 Sum_probs=42.4
Q ss_pred EEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCC--CCHHHHHHHHHHHh----ccCC-CCCCccHHHHHHHHH
Q 038637 230 VISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSED--FDVFRVTKSILKSI----ANDQ-SNNDDDLNLLQEKLK 302 (962)
Q Consensus 230 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~--~~~~~~~~~il~~l----~~~~-~~~~~~~~~~~~~l~ 302 (962)
+|+|.|.+|+||||+|+++.... +..=...+.++...- ++....-..+.... +-+. ...+.+.+.+.+.++
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l--~~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~ 78 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIF--AREGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFR 78 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH--HhcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHH
Confidence 58999999999999999887632 211111233332221 22223322222222 1111 125667788888888
Q ss_pred hHhCCc
Q 038637 303 KQLSGN 308 (962)
Q Consensus 303 ~~l~~k 308 (962)
.+.+++
T Consensus 79 ~L~~g~ 84 (277)
T cd02029 79 TYGETG 84 (277)
T ss_pred HHHcCC
Confidence 777654
No 418
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=93.04 E-value=0.42 Score=49.73 Aligned_cols=84 Identities=20% Similarity=0.246 Sum_probs=48.6
Q ss_pred cEEEEEEcCCCchHHHHH-HHHhCccchhcccceE-EEEEeCCCC-CHHHHHHHHHHHhccCC------CCCCccH----
Q 038637 228 FSVISINGMGGVGKTTLA-QLVYNDDRVQRHFQFK-AWACVSEDF-DVFRVTKSILKSIANDQ------SNNDDDL---- 294 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~F~~~-~wv~v~~~~-~~~~~~~~il~~l~~~~------~~~~~~~---- 294 (962)
-.-++|.|.+|+|||+|| ..+.+. .+-+.. +++-+++.. ...++.+++...=.... ..+....
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~----~~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 144 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQ----KGKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYL 144 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHh----cCCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHH
Confidence 356799999999999996 666652 122333 667777764 34555555543211110 0011111
Q ss_pred -----HHHHHHHHhHhCCceEEEEEecC
Q 038637 295 -----NLLQEKLKKQLSGNKFLLVLDDV 317 (962)
Q Consensus 295 -----~~~~~~l~~~l~~kr~LlVlDdv 317 (962)
-.+.+.++. +++.+|+|+||+
T Consensus 145 a~~~a~aiAE~fr~--~G~~Vlvl~Dsl 170 (274)
T cd01132 145 APYTGCAMGEYFMD--NGKHALIIYDDL 170 (274)
T ss_pred HHHHHHHHHHHHHH--CCCCEEEEEcCh
Confidence 123344443 589999999999
No 419
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=92.99 E-value=0.074 Score=52.57 Aligned_cols=23 Identities=39% Similarity=0.664 Sum_probs=21.0
Q ss_pred EEEEEEcCCCchHHHHHHHHhCc
Q 038637 229 SVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
++|.|+|+.|+||||||+.++..
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~ 24 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEE 24 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHcc
Confidence 57899999999999999999873
No 420
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=92.92 E-value=0.064 Score=51.15 Aligned_cols=22 Identities=27% Similarity=0.573 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHhCc
Q 038637 230 VISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 230 vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
++.|+|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 3789999999999999999773
No 421
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=92.92 E-value=0.47 Score=53.05 Aligned_cols=87 Identities=17% Similarity=0.247 Sum_probs=50.3
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCC-CHHHHHHHHHHHhccCC------CCCCccHHH---
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDF-DVFRVTKSILKSIANDQ------SNNDDDLNL--- 296 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~~~~~il~~l~~~~------~~~~~~~~~--- 296 (962)
.-..++|+|..|+|||||++.+.+.. +.+..+++.+++.. ...+++.+....=.... ..+......
T Consensus 154 ~GqrigI~G~sG~GKSTLL~~I~~~~----~~d~~vi~~iGeRgrEv~efl~~~~~~~~~~rtv~vv~tsd~p~~~r~~a 229 (433)
T PRK07594 154 EGQRVGIFSAPGVGKSTLLAMLCNAP----DADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVATSDRPALERVRA 229 (433)
T ss_pred CCCEEEEECCCCCCccHHHHHhcCCC----CCCEEEEEEECCCchHHHHHHHHhhccCCcceEEEEEECCCCCHHHHHHH
Confidence 34688999999999999999998732 34445666666543 34455555432110000 001111111
Q ss_pred --HHHHHHhHh--CCceEEEEEecC
Q 038637 297 --LQEKLKKQL--SGNKFLLVLDDV 317 (962)
Q Consensus 297 --~~~~l~~~l--~~kr~LlVlDdv 317 (962)
..-.+.+++ +++++|+++||+
T Consensus 230 ~~~a~tiAEyfrd~G~~VLl~~Dsl 254 (433)
T PRK07594 230 LFVATTIAEFFRDNGKRVVLLADSL 254 (433)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCH
Confidence 112233333 589999999999
No 422
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=92.88 E-value=0.43 Score=49.06 Aligned_cols=49 Identities=20% Similarity=0.158 Sum_probs=31.4
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHH
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSI 279 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i 279 (962)
...++.|.|.+|.||||+|.++.... .+.. ..+++++... +..++.+.+
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~-~~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGF-LQNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH-HhCC-CcEEEEeCCC--CHHHHHHHH
Confidence 34699999999999999986665532 1222 3456666333 455665555
No 423
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=92.88 E-value=0.076 Score=49.70 Aligned_cols=39 Identities=23% Similarity=0.330 Sum_probs=26.6
Q ss_pred EEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCC
Q 038637 229 SVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSE 268 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~ 268 (962)
++|.|+|+.|+|||||++.+.+.. .+..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l-~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL-KRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH-HHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH-hHcCCceEEEEEccC
Confidence 489999999999999999999843 223455555555554
No 424
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.87 E-value=0.39 Score=54.52 Aligned_cols=87 Identities=17% Similarity=0.144 Sum_probs=44.9
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCC--CHHHHHHHHHHHhccCCCCCCccHHHHHHHHHhH
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDF--DVFRVTKSILKSIANDQSNNDDDLNLLQEKLKKQ 304 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~--~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~ 304 (962)
..+|++++|+.|+||||++..++.....+..-..+..++.. .+ ...+-++...+.++.+.. ...+..+....+ ..
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~D-t~RigA~EQLr~~AeilGVpv~-~~~~~~Dl~~aL-~~ 331 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTD-SYRIGGHEQLRIYGKILGVPVH-AVKDAADLRLAL-SE 331 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCC-ccchhHHHHHHHHHHHhCCCee-ccCCchhHHHHH-Hh
Confidence 35799999999999999999888643222111234445433 23 223334444454444332 112222222222 23
Q ss_pred hCCceEEEEEecC
Q 038637 305 LSGNKFLLVLDDV 317 (962)
Q Consensus 305 l~~kr~LlVlDdv 317 (962)
++++ -.+++|-.
T Consensus 332 L~d~-d~VLIDTa 343 (484)
T PRK06995 332 LRNK-HIVLIDTI 343 (484)
T ss_pred ccCC-CeEEeCCC
Confidence 3444 36666765
No 425
>PRK06217 hypothetical protein; Validated
Probab=92.84 E-value=0.068 Score=52.96 Aligned_cols=22 Identities=36% Similarity=0.504 Sum_probs=20.1
Q ss_pred EEEEEcCCCchHHHHHHHHhCc
Q 038637 230 VISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 230 vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
.|.|.|.+|+||||+|+++...
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~ 24 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAER 24 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999874
No 426
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=92.81 E-value=0.46 Score=53.06 Aligned_cols=87 Identities=17% Similarity=0.198 Sum_probs=51.0
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCC-HHHHHHHHHHHhccCC------CCCCccHHH---
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFD-VFRVTKSILKSIANDQ------SNNDDDLNL--- 296 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~-~~~~~~~il~~l~~~~------~~~~~~~~~--- 296 (962)
+-..++|+|..|+|||||++.+++... -+..+++-+++... ..++..+.+..-+... ..+......
T Consensus 157 ~Gqri~I~G~sG~GKTtLL~~I~~~~~----~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a 232 (442)
T PRK08927 157 RGQRMGIFAGSGVGKSVLLSMLARNAD----ADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQA 232 (442)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccC----CCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHH
Confidence 346789999999999999999987432 24455666766543 3344444444322111 001111111
Q ss_pred --HHHHHHhHh--CCceEEEEEecC
Q 038637 297 --LQEKLKKQL--SGNKFLLVLDDV 317 (962)
Q Consensus 297 --~~~~l~~~l--~~kr~LlVlDdv 317 (962)
..-.+.+++ +++.+|+++||+
T Consensus 233 ~~~a~tiAEyfrd~G~~Vll~~Dsl 257 (442)
T PRK08927 233 AYLTLAIAEYFRDQGKDVLCLMDSV 257 (442)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEeCc
Confidence 122233333 589999999999
No 427
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=92.79 E-value=0.2 Score=59.21 Aligned_cols=74 Identities=16% Similarity=0.103 Sum_probs=49.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhc-ccceEEEEEeCCCCCHHHHHHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQR-HFQFKAWACVSEDFDVFRVTKSI 279 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~F~~~~wv~v~~~~~~~~~~~~i 279 (962)
++++|.++.++.+...+... +.+.++|++|+||||+|+.+.+. +.. .|...+++. ....+...+++.+
T Consensus 18 ~~viG~~~a~~~l~~a~~~~--------~~~ll~G~pG~GKT~la~~la~~--l~~~~~~~~~~~~-n~~~~~~~~~~~v 86 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQK--------RNVLLIGEPGVGKSMLAKAMAEL--LPDEELEDILVYP-NPEDPNMPRIVEV 86 (608)
T ss_pred hhccCHHHHHHHHHHHHHcC--------CCEEEECCCCCCHHHHHHHHHHH--cCchhheeEEEEe-CCCCCchHHHHHH
Confidence 56889999888877777432 25569999999999999999873 322 333333332 2223455667777
Q ss_pred HHHhcc
Q 038637 280 LKSIAN 285 (962)
Q Consensus 280 l~~l~~ 285 (962)
..+++.
T Consensus 87 ~~~~g~ 92 (608)
T TIGR00764 87 PAGEGR 92 (608)
T ss_pred HHhhch
Confidence 766654
No 428
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=92.79 E-value=0.08 Score=52.03 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.8
Q ss_pred EEEEEEcCCCchHHHHHHHHhCc
Q 038637 229 SVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
++|.+.|++|+||||+|+.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~ 25 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSV 25 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999763
No 429
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=92.78 E-value=0.13 Score=54.21 Aligned_cols=42 Identities=26% Similarity=0.203 Sum_probs=35.3
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCC
Q 038637 226 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSED 269 (962)
Q Consensus 226 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~ 269 (962)
+.-+++.|+|.+|+|||++|.++.. +...+...++||+..+.
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~--~~~~~ge~vlyvs~~e~ 62 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLY--EGAREGEPVLYVSTEES 62 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHH--HHHhcCCcEEEEEecCC
Confidence 4668999999999999999998887 44555888999988766
No 430
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=92.75 E-value=0.25 Score=53.43 Aligned_cols=21 Identities=29% Similarity=0.422 Sum_probs=18.7
Q ss_pred EEEEcCCCchHHHHHHHHhCc
Q 038637 231 ISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 231 i~I~G~~GiGKTtLa~~v~~~ 251 (962)
+.+.|++|.||||+++.+.+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~ 22 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSAT 22 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999999863
No 431
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=92.75 E-value=0.29 Score=47.84 Aligned_cols=120 Identities=17% Similarity=0.072 Sum_probs=59.9
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhcccceEE---EEEeCCCCCHHHHHHHH--HHH--hccCC----CCCCcc--
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKA---WACVSEDFDVFRVTKSI--LKS--IANDQ----SNNDDD-- 293 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~---wv~v~~~~~~~~~~~~i--l~~--l~~~~----~~~~~~-- 293 (962)
....|-|+|..|-||||.|-.+.- +...+=-.+. |.--.........++.+ +.. .+... .....+
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~--ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~ 98 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMAL--RAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIA 98 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHH--HHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHH
Confidence 346889999999999999966654 2222211122 22212122333333321 000 01100 001111
Q ss_pred -HHHHHHHHHhHhCCce-EEEEEecCCC---CCccchhhccCCCCCCCCCcEEEEEecCh
Q 038637 294 -LNLLQEKLKKQLSGNK-FLLVLDDVWN---KNYNYWSILSCPFGAGAPGSKIVVTTRNL 348 (962)
Q Consensus 294 -~~~~~~~l~~~l~~kr-~LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 348 (962)
.....+..++.+.+.+ =|+|||.+-. ...-..+++...+.....+.-||+|-|+.
T Consensus 99 ~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 99 AAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 1223334455554444 4999999822 11233455555555445677999999984
No 432
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=92.69 E-value=0.081 Score=49.97 Aligned_cols=20 Identities=50% Similarity=0.806 Sum_probs=18.4
Q ss_pred EEEEEcCCCchHHHHHHHHh
Q 038637 230 VISINGMGGVGKTTLAQLVY 249 (962)
Q Consensus 230 vi~I~G~~GiGKTtLa~~v~ 249 (962)
.|.|+|.+|+||||+++.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999998886
No 433
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=92.68 E-value=0.11 Score=51.44 Aligned_cols=38 Identities=24% Similarity=0.238 Sum_probs=28.5
Q ss_pred cEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeC
Q 038637 228 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVS 267 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~ 267 (962)
.++|.|+|+.|+|||||++++.. .....|...++.+-.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~--~~~~~~~~~v~~TTR 39 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQ--EFPDKFGRVVSHTTR 39 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHH--HSTTTEEEEEEEESS
T ss_pred CCEEEEECCCCCCHHHHHHHHHH--hcccccccceeeccc
Confidence 36889999999999999999987 344556555554433
No 434
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=92.66 E-value=0.34 Score=48.23 Aligned_cols=52 Identities=29% Similarity=0.224 Sum_probs=38.2
Q ss_pred CCccccchhhHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 200 EAEVYGREKEEEEIVELLLNDGL-------RADDGFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 200 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
-.++=|.|-.++++.+...-.-. .+-+.++-|.++|++|.|||.||++|+++
T Consensus 154 y~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~ 212 (408)
T KOG0727|consen 154 YADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANH 212 (408)
T ss_pred ccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhc
Confidence 34566888888888877642211 12235677889999999999999999995
No 435
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=92.60 E-value=0.11 Score=45.65 Aligned_cols=22 Identities=36% Similarity=0.409 Sum_probs=19.9
Q ss_pred cEEEEEEcCCCchHHHHHHHHh
Q 038637 228 FSVISINGMGGVGKTTLAQLVY 249 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~ 249 (962)
-..++|+|+.|.|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4689999999999999999876
No 436
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=92.60 E-value=0.086 Score=47.87 Aligned_cols=22 Identities=36% Similarity=0.575 Sum_probs=19.7
Q ss_pred EEEEcCCCchHHHHHHHHhCcc
Q 038637 231 ISINGMGGVGKTTLAQLVYNDD 252 (962)
Q Consensus 231 i~I~G~~GiGKTtLa~~v~~~~ 252 (962)
|.|+|..|+|||||.+.+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~ 23 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGE 23 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 6899999999999999998754
No 437
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=92.59 E-value=0.57 Score=54.19 Aligned_cols=66 Identities=17% Similarity=0.049 Sum_probs=41.7
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHhc
Q 038637 210 EEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSIA 284 (962)
Q Consensus 210 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~ 284 (962)
+.++-+.|...- ..-.++.|.|++|+|||||+.++... ...+=..+++++..+. ..++.+.+ +.++
T Consensus 249 i~~lD~~lgGG~----~~gs~~li~G~~G~GKt~l~~~f~~~--~~~~ge~~~y~s~eEs--~~~i~~~~-~~lg 314 (484)
T TIGR02655 249 VVRLDEMCGGGF----FKDSIILATGATGTGKTLLVSKFLEN--ACANKERAILFAYEES--RAQLLRNA-YSWG 314 (484)
T ss_pred hHhHHHHhcCCc----cCCcEEEEECCCCCCHHHHHHHHHHH--HHHCCCeEEEEEeeCC--HHHHHHHH-HHcC
Confidence 345555664433 35689999999999999999988773 2233345667665444 44444443 3443
No 438
>PRK03846 adenylylsulfate kinase; Provisional
Probab=92.58 E-value=0.11 Score=52.14 Aligned_cols=25 Identities=28% Similarity=0.384 Sum_probs=22.6
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhC
Q 038637 226 DGFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 226 ~~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
.+..+|.|+|++|+||||||+.+..
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~ 46 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEE 46 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999999987
No 439
>PLN02348 phosphoribulokinase
Probab=92.56 E-value=0.33 Score=53.02 Aligned_cols=26 Identities=31% Similarity=0.452 Sum_probs=23.4
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 226 DGFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 226 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
.+..+|+|.|.+|.||||+|+.+.+.
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~ 72 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSV 72 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999873
No 440
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=92.54 E-value=0.11 Score=49.14 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhC
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
+..+|.++|.+|.||||+|.+++.
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~ 45 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEE 45 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHH
Confidence 567999999999999999999987
No 441
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.52 E-value=0.015 Score=56.07 Aligned_cols=86 Identities=20% Similarity=0.200 Sum_probs=55.8
Q ss_pred CccEEEEeCCCCC-CCCCCCCCCCCcCeEeecCCCCceEeCccccCCCCCCCCCCcceeeccccccccccccccCCcccc
Q 038637 824 KLVNLKFGYCRMC-TSLPSVGQLPLLKHLKISGMDRVKSVGLEFYGSSCSVPFPSLETLSFSDMREWEEWISCGAGQEVD 902 (962)
Q Consensus 824 ~L~~L~L~~~~~~-~~l~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~ 902 (962)
.++.++-+++.+. ..+.-+.+++.++.|.+.+|..+..-..++.+. .+|+|+.|+|++|+.+++-.. ...
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~----~~~~L~~L~lsgC~rIT~~GL-----~~L 172 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGG----LAPSLQDLDLSGCPRITDGGL-----ACL 172 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcc----cccchheeeccCCCeechhHH-----HHH
Confidence 3566666666554 334456777788888888877666555554442 378888888888887665422 224
Q ss_pred CcCCccceEeEccCCC
Q 038637 903 EVFPKLRKLSLFNCYK 918 (962)
Q Consensus 903 ~~~p~L~~L~l~~c~~ 918 (962)
..+++|+.|.|++.|.
T Consensus 173 ~~lknLr~L~l~~l~~ 188 (221)
T KOG3864|consen 173 LKLKNLRRLHLYDLPY 188 (221)
T ss_pred HHhhhhHHHHhcCchh
Confidence 4678888888877653
No 442
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=92.52 E-value=0.095 Score=52.07 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.7
Q ss_pred EEEEEEcCCCchHHHHHHHHhCc
Q 038637 229 SVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
.++.|+|+.|+|||||++.+...
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~ 25 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQR 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhcc
Confidence 47899999999999999999774
No 443
>PF13245 AAA_19: Part of AAA domain
Probab=92.51 E-value=0.17 Score=41.49 Aligned_cols=22 Identities=36% Similarity=0.543 Sum_probs=16.7
Q ss_pred EEEEEEcCCCchHHH-HHHHHhC
Q 038637 229 SVISINGMGGVGKTT-LAQLVYN 250 (962)
Q Consensus 229 ~vi~I~G~~GiGKTt-La~~v~~ 250 (962)
+++.|.|++|.|||+ +++.+.+
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 578889999999995 4444444
No 444
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=92.51 E-value=0.096 Score=52.43 Aligned_cols=24 Identities=38% Similarity=0.491 Sum_probs=21.3
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhC
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
.-.+++|+|..|.|||||++.+.-
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~G 55 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAG 55 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhc
Confidence 346899999999999999999975
No 445
>PRK13949 shikimate kinase; Provisional
Probab=92.48 E-value=0.083 Score=51.43 Aligned_cols=22 Identities=36% Similarity=0.480 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHhCc
Q 038637 230 VISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 230 vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
-|.|+|++|+||||+++.++..
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 446
>PRK13947 shikimate kinase; Provisional
Probab=92.46 E-value=0.082 Score=51.75 Aligned_cols=21 Identities=38% Similarity=0.480 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHhC
Q 038637 230 VISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 230 vi~I~G~~GiGKTtLa~~v~~ 250 (962)
.|.|+|++|+||||+|+.+.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~ 23 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVAT 23 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 488999999999999999987
No 447
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=92.46 E-value=0.26 Score=53.97 Aligned_cols=65 Identities=23% Similarity=0.166 Sum_probs=46.8
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHH
Q 038637 202 EVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSI 279 (962)
Q Consensus 202 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~i 279 (962)
.++|++..+..+...+... +.+.+.|++|+|||+||+.++.. .. -...++.+.......++.-..
T Consensus 25 ~~~g~~~~~~~~l~a~~~~--------~~vll~G~PG~gKT~la~~lA~~--l~---~~~~~i~~t~~l~p~d~~G~~ 89 (329)
T COG0714 25 VVVGDEEVIELALLALLAG--------GHVLLEGPPGVGKTLLARALARA--LG---LPFVRIQCTPDLLPSDLLGTY 89 (329)
T ss_pred eeeccHHHHHHHHHHHHcC--------CCEEEECCCCccHHHHHHHHHHH--hC---CCeEEEecCCCCCHHHhcCch
Confidence 3788888888877777654 45789999999999999999873 32 233566677766666654433
No 448
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=92.45 E-value=0.32 Score=47.13 Aligned_cols=79 Identities=16% Similarity=0.167 Sum_probs=44.9
Q ss_pred EEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHhccCC--CCCCccHHHHHHHHHhHhCCc
Q 038637 231 ISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSIANDQ--SNNDDDLNLLQEKLKKQLSGN 308 (962)
Q Consensus 231 i~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~--~~~~~~~~~~~~~l~~~l~~k 308 (962)
+.|.|.+|+|||++|.++... ....++++.-.+.++. ++...|.+...... .........+.+.+.+. . +
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~-----~~~~~~y~at~~~~d~-em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~-~-~ 73 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE-----LGGPVTYIATAEAFDD-EMAERIARHRKRRPAHWRTIETPRDLVSALKEL-D-P 73 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh-----cCCCeEEEEccCcCCH-HHHHHHHHHHHhCCCCceEeecHHHHHHHHHhc-C-C
Confidence 679999999999999988753 2245667776776654 34444433222111 11112223344444222 2 2
Q ss_pred eEEEEEecC
Q 038637 309 KFLLVLDDV 317 (962)
Q Consensus 309 r~LlVlDdv 317 (962)
.-.+++|.+
T Consensus 74 ~~~VLIDcl 82 (169)
T cd00544 74 GDVVLIDCL 82 (169)
T ss_pred CCEEEEEcH
Confidence 337899997
No 449
>PRK14737 gmk guanylate kinase; Provisional
Probab=92.41 E-value=0.12 Score=51.06 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=22.5
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
..++|.|+|++|+|||||++.+...
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~ 27 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEE 27 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 4688999999999999999999873
No 450
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=92.40 E-value=0.11 Score=48.53 Aligned_cols=23 Identities=39% Similarity=0.639 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCchHHHHHHHHhC
Q 038637 228 FSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
.++|.|+|.+|+||||+.+.+..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~ 26 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALK 26 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHH
Confidence 68999999999999999887765
No 451
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=92.39 E-value=0.085 Score=51.12 Aligned_cols=21 Identities=52% Similarity=0.661 Sum_probs=18.3
Q ss_pred EEEEcCCCchHHHHHHHHhCc
Q 038637 231 ISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 231 i~I~G~~GiGKTtLa~~v~~~ 251 (962)
|.|+|.+|+|||||++.+++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~ 22 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEE 22 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHH
Confidence 689999999999999999874
No 452
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=92.37 E-value=0.21 Score=53.62 Aligned_cols=49 Identities=20% Similarity=0.196 Sum_probs=33.1
Q ss_pred cEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHH
Q 038637 228 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKS 278 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~ 278 (962)
.+++.+.|.||+||||+|.+..- ........+.-|+.....++.+++..
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~--~lA~~g~kvLlvStDPAhsL~d~f~~ 50 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAV--KLAESGKKVLLVSTDPAHSLGDVFDL 50 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHH--HHHHcCCcEEEEEeCCCCchHhhhcc
Confidence 47999999999999999987554 23333344666666666555555433
No 453
>PRK06936 type III secretion system ATPase; Provisional
Probab=92.36 E-value=0.32 Score=54.22 Aligned_cols=85 Identities=20% Similarity=0.263 Sum_probs=51.8
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCC-CHHHHHHHHHHHhccCC------CCCCccH-----
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDF-DVFRVTKSILKSIANDQ------SNNDDDL----- 294 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~~~~~il~~l~~~~------~~~~~~~----- 294 (962)
+-..++|.|..|+|||||.+.+++... -+..+++-+++.. ...++....+..-+... ..+....
T Consensus 161 ~Gq~~~I~G~sG~GKStLl~~Ia~~~~----~dv~V~~liGERgrEv~ef~~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (439)
T PRK06936 161 EGQRMGIFAAAGGGKSTLLASLIRSAE----VDVTVLALIGERGREVREFIESDLGEEGLRKAVLVVATSDRPSMERAKA 236 (439)
T ss_pred CCCEEEEECCCCCChHHHHHHHhcCCC----CCEEEEEEEccCcHHHHHHHHHHhcccccceeEEEEECCCCCHHHHHHH
Confidence 446889999999999999999998432 2566777777764 33444434333211111 0011111
Q ss_pred ----HHHHHHHHhHhCCceEEEEEecC
Q 038637 295 ----NLLQEKLKKQLSGNKFLLVLDDV 317 (962)
Q Consensus 295 ----~~~~~~l~~~l~~kr~LlVlDdv 317 (962)
-.+++.+++ +++++|+++||+
T Consensus 237 ~~~a~tiAEyfrd--~G~~Vll~~Dsl 261 (439)
T PRK06936 237 GFVATSIAEYFRD--QGKRVLLLMDSV 261 (439)
T ss_pred HHHHHHHHHHHHH--cCCCEEEeccch
Confidence 123334443 589999999999
No 454
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=92.36 E-value=0.24 Score=49.57 Aligned_cols=41 Identities=27% Similarity=0.284 Sum_probs=26.8
Q ss_pred EEEEEEcCCCchHHHHHHHHhCccchhccc--------ceEEEEEeCCC
Q 038637 229 SVISINGMGGVGKTTLAQLVYNDDRVQRHF--------QFKAWACVSED 269 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F--------~~~~wv~v~~~ 269 (962)
.++.|+|++|+||||++..+....-....| ..++|++....
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~ 81 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS 81 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC
Confidence 478999999999999998887643322222 24667766655
No 455
>PRK00300 gmk guanylate kinase; Provisional
Probab=92.36 E-value=0.1 Score=52.85 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
...+|+|+|+.|+||||||+.++..
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~ 28 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLER 28 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3468999999999999999999874
No 456
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=92.33 E-value=0.089 Score=49.89 Aligned_cols=21 Identities=43% Similarity=0.771 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHhC
Q 038637 230 VISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 230 vi~I~G~~GiGKTtLa~~v~~ 250 (962)
+|.|+|++|+||||+|+.+..
T Consensus 1 ~I~i~G~~GsGKst~a~~la~ 21 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAK 21 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999986
No 457
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=92.31 E-value=0.1 Score=52.62 Aligned_cols=90 Identities=17% Similarity=0.244 Sum_probs=48.8
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEE-------EEEeCCCCCHHHH--HHHHHHHhccCCCCCC-----
Q 038637 226 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKA-------WACVSEDFDVFRV--TKSILKSIANDQSNND----- 291 (962)
Q Consensus 226 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~-------wv~v~~~~~~~~~--~~~il~~l~~~~~~~~----- 291 (962)
.+..+|.++||+|.||||..++++.+...+..-+.++ -+...-+.|+++. .++..++.+..+....
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLN 96 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLN 96 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHH
Confidence 3567888999999999999999987533222111111 1112233455544 4566777655443221
Q ss_pred ---ccHHHHHHHHHhHhCCceEEEEEec
Q 038637 292 ---DDLNLLQEKLKKQLSGNKFLLVLDD 316 (962)
Q Consensus 292 ---~~~~~~~~~l~~~l~~kr~LlVlDd 316 (962)
...++..+.|.+.-..-.|. ++|-
T Consensus 97 LF~tk~dqv~~~iek~~~~~~~~-liDT 123 (366)
T KOG1532|consen 97 LFATKFDQVIELIEKRAEEFDYV-LIDT 123 (366)
T ss_pred HHHHHHHHHHHHHHHhhcccCEE-EEcC
Confidence 12355555555554443443 3343
No 458
>COG4240 Predicted kinase [General function prediction only]
Probab=92.31 E-value=0.46 Score=46.84 Aligned_cols=84 Identities=15% Similarity=0.118 Sum_probs=53.3
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHhcc----CCCCCCccHHHHHHHH
Q 038637 226 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSIAN----DQSNNDDDLNLLQEKL 301 (962)
Q Consensus 226 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~----~~~~~~~~~~~~~~~l 301 (962)
++.-+++|.|+-|+||||++..+++....+.- ...+..+..+-+-...-...++++... .......|..-+.+.+
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~kg~-ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnVL 126 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGL-ERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNVL 126 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHHhcc-cceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHHH
Confidence 46789999999999999999999985322221 355566555544444445555565421 1111445666677777
Q ss_pred HhHhCCceE
Q 038637 302 KKQLSGNKF 310 (962)
Q Consensus 302 ~~~l~~kr~ 310 (962)
....+++.-
T Consensus 127 nai~~g~~~ 135 (300)
T COG4240 127 NAIARGGPT 135 (300)
T ss_pred HHHhcCCCC
Confidence 777777643
No 459
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=92.30 E-value=0.55 Score=44.77 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=19.4
Q ss_pred EEEEcCCCchHHHHHHHHhCc
Q 038637 231 ISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 231 i~I~G~~GiGKTtLa~~v~~~ 251 (962)
|+|+|..|+|||||.+.+...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 689999999999999999875
No 460
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=92.30 E-value=0.55 Score=52.41 Aligned_cols=87 Identities=21% Similarity=0.243 Sum_probs=48.4
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCC-CCHHHHHHHHHHHhccCC------CCCCccHHH---
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSED-FDVFRVTKSILKSIANDQ------SNNDDDLNL--- 296 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~-~~~~~~~~~il~~l~~~~------~~~~~~~~~--- 296 (962)
.-..++|+|..|+|||||++.+..... -+..+.+.+++. -...++....+..-+... ..+......
T Consensus 139 ~Gq~i~I~G~sG~GKTtLl~~I~~~~~----~~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a 214 (418)
T TIGR03498 139 RGQRLGIFAGSGVGKSTLLSMLARNTD----ADVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQA 214 (418)
T ss_pred CCcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHH
Confidence 346789999999999999999987422 122333334443 334445554443322111 001111111
Q ss_pred --HHHHHHhHh--CCceEEEEEecC
Q 038637 297 --LQEKLKKQL--SGNKFLLVLDDV 317 (962)
Q Consensus 297 --~~~~l~~~l--~~kr~LlVlDdv 317 (962)
..-.+.+++ +++.+|+++||+
T Consensus 215 ~~~a~~iAEyfrd~G~~Vll~~Dsl 239 (418)
T TIGR03498 215 AYTATAIAEYFRDQGKDVLLLMDSV 239 (418)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccch
Confidence 122234444 589999999998
No 461
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=92.23 E-value=0.096 Score=48.97 Aligned_cols=21 Identities=38% Similarity=0.676 Sum_probs=19.3
Q ss_pred EEEEcCCCchHHHHHHHHhCc
Q 038637 231 ISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 231 i~I~G~~GiGKTtLa~~v~~~ 251 (962)
|.|+|+.|+|||||++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhc
Confidence 789999999999999999874
No 462
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.21 E-value=0.76 Score=53.50 Aligned_cols=98 Identities=20% Similarity=0.207 Sum_probs=58.7
Q ss_pred CccccchhhHHHHHHHHhcCCC------CCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGL------RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFR 274 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 274 (962)
+++=|.++.+.+|.+-+.-.-. .+-.+..=|.++|++|.|||-+|++|+... . ..|++|-..
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc--s-----L~FlSVKGP----- 739 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC--S-----LNFLSVKGP----- 739 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc--e-----eeEEeecCH-----
Confidence 4466889889998887643111 011234567899999999999999998732 1 224555433
Q ss_pred HHHHHHHHhccCCCCCCccHHHHHHHHHhHhCCceEEEEEecCCC
Q 038637 275 VTKSILKSIANDQSNNDDDLNLLQEKLKKQLSGNKFLLVLDDVWN 319 (962)
Q Consensus 275 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~ 319 (962)
+++...-+ ...+.+.+...+.-+.++++|+||.+.+
T Consensus 740 ---ELLNMYVG------qSE~NVR~VFerAR~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 740 ---ELLNMYVG------QSEENVREVFERARSAAPCVIFFDELDS 775 (953)
T ss_pred ---HHHHHHhc------chHHHHHHHHHHhhccCCeEEEeccccc
Confidence 12221111 1123333334444456899999999844
No 463
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=92.18 E-value=0.39 Score=57.50 Aligned_cols=157 Identities=15% Similarity=0.144 Sum_probs=78.8
Q ss_pred CccccchhhHHHHHHHHhcCCC------CCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGL------RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFR 274 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 274 (962)
.++.|.+..++++.+.+.-... ....-.+-|.++|++|.|||++|+.++.. ....| +.++.++
T Consensus 152 ~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~--~~~~f---~~is~~~------ 220 (644)
T PRK10733 152 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVPF---FTISGSD------ 220 (644)
T ss_pred HHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHH--cCCCE---EEEehHH------
Confidence 3566777666666554422110 00011234899999999999999999873 22222 1222211
Q ss_pred HHHHHHHHhccCCCCCCccHHHHHHHHHhHhCCceEEEEEecCCCCC----------ccchh----hccCCCCC--CCCC
Q 038637 275 VTKSILKSIANDQSNNDDDLNLLQEKLKKQLSGNKFLLVLDDVWNKN----------YNYWS----ILSCPFGA--GAPG 338 (962)
Q Consensus 275 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~----------~~~~~----~l~~~l~~--~~~g 338 (962)
+. .... ......+.+.+.......+.+|++|+++.-. ...+. .+...+.. ...+
T Consensus 221 ~~----~~~~------g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~ 290 (644)
T PRK10733 221 FV----EMFV------GVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEG 290 (644)
T ss_pred hH----Hhhh------cccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCC
Confidence 11 1110 0111223333333334567899999984310 01111 11111111 1234
Q ss_pred cEEEEEecChhhHhh-h----CCCCcccCCCCCHHHHHHHHHHhh
Q 038637 339 SKIVVTTRNLDVANL-T----RAYPKYGLKELSDDDCLRVVIQHS 378 (962)
Q Consensus 339 s~ilvTtR~~~v~~~-~----~~~~~~~l~~L~~~~~~~Lf~~~a 378 (962)
.-||.||...+.... . .-...+.+...+.++-.+++..+.
T Consensus 291 vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~ 335 (644)
T PRK10733 291 IIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHM 335 (644)
T ss_pred eeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHh
Confidence 455667776543221 1 123457788888888888887765
No 464
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.17 E-value=0.16 Score=51.03 Aligned_cols=119 Identities=14% Similarity=0.107 Sum_probs=59.3
Q ss_pred cEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHhccCCCC--CC----ccHHHHHHHH
Q 038637 228 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSIANDQSN--ND----DDLNLLQEKL 301 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~--~~----~~~~~~~~~l 301 (962)
.+++.|+|+.|.||||+.+.+.... +..+ ...+|.+.. ..-.+...|...++..... .. .+..++...+
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~~~-~la~--~G~~vpa~~--~~l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il 103 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIALLA-IMAQ--IGCFVPAEY--ATLPIFNRLLSRLSNDDSMERNLSTFASEMSETAYIL 103 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH-HHHH--cCCCcchhh--cCccChhheeEecCCccccchhhhHHHHHHHHHHHHH
Confidence 4789999999999999998886432 1111 111221111 1112223333333322110 00 0111222111
Q ss_pred HhHhCCceEEEEEecCCCCC-ccc----hhhccCCCCCCCCCcEEEEEecChhhHhhhC
Q 038637 302 KKQLSGNKFLLVLDDVWNKN-YNY----WSILSCPFGAGAPGSKIVVTTRNLDVANLTR 355 (962)
Q Consensus 302 ~~~l~~kr~LlVlDdv~~~~-~~~----~~~l~~~l~~~~~gs~ilvTtR~~~v~~~~~ 355 (962)
. +..++-|+++|..-... ..+ ...+...+. ..|+.+|++|-..+++....
T Consensus 104 -~-~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~--~~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 104 -D-YADGDSLVLIDELGRGTSSADGFAISLAILECLI--KKESTVFFATHFRDIAAILG 158 (204)
T ss_pred -H-hcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhh
Confidence 1 23567899999973321 111 111222222 23789999999988887654
No 465
>PRK14530 adenylate kinase; Provisional
Probab=92.14 E-value=0.095 Score=53.48 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=19.8
Q ss_pred EEEEEcCCCchHHHHHHHHhCc
Q 038637 230 VISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 230 vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
.|.|+|++|+||||+|+.++..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~ 26 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEE 26 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999763
No 466
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.14 E-value=0.16 Score=49.82 Aligned_cols=36 Identities=22% Similarity=0.134 Sum_probs=27.0
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEE
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWAC 265 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~ 265 (962)
.-.|++|+|++|+|||||.+-+.. ....=...+|+.
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~---LE~~~~G~I~i~ 62 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNG---LEEPDSGSITVD 62 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHC---CcCCCCceEEEC
Confidence 346999999999999999998875 223334566663
No 467
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=92.11 E-value=0.5 Score=55.71 Aligned_cols=116 Identities=16% Similarity=0.149 Sum_probs=58.6
Q ss_pred EEEEEEcCCCchHHHHHHHHhCccch-hcccceEEEEEeCCCCCHHHHHHHHHHHhccCCCCC--CccHHHHHHHHHhHh
Q 038637 229 SVISINGMGGVGKTTLAQLVYNDDRV-QRHFQFKAWACVSEDFDVFRVTKSILKSIANDQSNN--DDDLNLLQEKLKKQL 305 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~--~~~~~~~~~~l~~~l 305 (962)
++..|.|.+|.||||++..+...... ...=...+.+......-..++.+.+-..+..-.... ......-...|.+.|
T Consensus 168 ~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~TiHrlL 247 (615)
T PRK10875 168 RISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEASTLHRLL 247 (615)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHHHHHHh
Confidence 68899999999999999888763211 111123455555554444455544433222110000 000000112223333
Q ss_pred C----C--------ce---EEEEEecCCCCCccchhhccCCCCCCCCCcEEEEEecC
Q 038637 306 S----G--------NK---FLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVVTTRN 347 (962)
Q Consensus 306 ~----~--------kr---~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~ 347 (962)
. + .+ -++|+|.+.--+......+..+++ +++|+|+---.
T Consensus 248 g~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al~---~~~rlIlvGD~ 301 (615)
T PRK10875 248 GAQPGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLIDALP---PHARVIFLGDR 301 (615)
T ss_pred CcCCCccchhhccccCCCCCeEEEChHhcccHHHHHHHHHhcc---cCCEEEEecch
Confidence 1 1 11 289999985444444445555554 57788876543
No 468
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=92.02 E-value=0.88 Score=48.88 Aligned_cols=48 Identities=19% Similarity=0.166 Sum_probs=35.6
Q ss_pred cEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCC-CHHHHHHHH
Q 038637 228 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDF-DVFRVTKSI 279 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~-~~~~~~~~i 279 (962)
-..++|.|..|+|||+|++++.+.. +-+.++++-+++.. ...+++.++
T Consensus 157 Gqr~~I~G~~G~GKT~L~~~Iak~~----~~dvvVyv~iGERg~Ev~e~l~ef 205 (369)
T cd01134 157 GGTAAIPGPFGCGKTVIQQSLSKYS----NSDIVIYVGCGERGNEMTEVLEEF 205 (369)
T ss_pred CCEEEEECCCCCChHHHHHHHHhCC----CCCEEEEEEeCCChHHHHHHHHHH
Confidence 4578999999999999999998842 33567888888764 344555544
No 469
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=92.02 E-value=0.13 Score=51.38 Aligned_cols=24 Identities=29% Similarity=0.515 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCchHHHHHHHHhCc
Q 038637 228 FSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
..+|.|.|.+|+||||+|+.+...
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~ 26 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARH 26 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999873
No 470
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=92.00 E-value=2.2 Score=45.05 Aligned_cols=41 Identities=7% Similarity=0.042 Sum_probs=29.1
Q ss_pred CceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEEEecC
Q 038637 307 GNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVVTTRN 347 (962)
Q Consensus 307 ~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~ 347 (962)
++.=++|+|++...+.+.+..+...+.....++.+|++|.+
T Consensus 94 ~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~ 134 (290)
T PRK05917 94 SPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAK 134 (290)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCC
Confidence 55568889999777667777777777665566666666655
No 471
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=91.92 E-value=0.25 Score=49.19 Aligned_cols=41 Identities=32% Similarity=0.489 Sum_probs=27.1
Q ss_pred EEEEEcCCCchHHHHHHHHhCccchhcc-cceEEEEEeCCCCCH
Q 038637 230 VISINGMGGVGKTTLAQLVYNDDRVQRH-FQFKAWACVSEDFDV 272 (962)
Q Consensus 230 vi~I~G~~GiGKTtLa~~v~~~~~~~~~-F~~~~wv~v~~~~~~ 272 (962)
.|+|+|-||+||||+|..+... -...+ |+ +.-|+...++++
T Consensus 2 kIaI~GKGG~GKTtiaalll~~-l~~~~~~~-VLvVDaDpd~nL 43 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKR-LLSKGGYN-VLVVDADPDSNL 43 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHH-HHhcCCce-EEEEeCCCCCCh
Confidence 5899999999999999874432 12222 33 445666666654
No 472
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=91.91 E-value=0.15 Score=52.63 Aligned_cols=42 Identities=29% Similarity=0.269 Sum_probs=28.5
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCC
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSED 269 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~ 269 (962)
.-.++.|.|.+|+|||++|.++.... .+..=+.++|++..+.
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~-~~~~ge~vlyvs~ee~ 59 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNG-LKNFGEKVLYVSFEEP 59 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH-HHHHT--EEEEESSS-
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHh-hhhcCCcEEEEEecCC
Confidence 56899999999999999998876532 1111245678877554
No 473
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=91.91 E-value=0.3 Score=59.00 Aligned_cols=47 Identities=19% Similarity=0.222 Sum_probs=35.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
+.++|....+.++.+.+..... ...-|.|+|..|+||+++|+.+.+.
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~----~~~pvli~Ge~GtGK~~~A~~ih~~ 371 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAK----SSFPVLLCGEEGVGKALLAQAIHNE 371 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhC----cCCCEEEECCCCcCHHHHHHHHHHh
Confidence 3578988888888777754432 2233689999999999999999874
No 474
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=91.90 E-value=0.96 Score=48.68 Aligned_cols=84 Identities=20% Similarity=0.295 Sum_probs=49.1
Q ss_pred cEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCC-CCHHHHHHHHHHHhccCC------CCCCccH------
Q 038637 228 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSED-FDVFRVTKSILKSIANDQ------SNNDDDL------ 294 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~-~~~~~~~~~il~~l~~~~------~~~~~~~------ 294 (962)
-..++|+|..|.|||||.+.+..... -+..+..-++.. -+..++....+..-.... ..+....
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~~----~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~ 144 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGTT----ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAA 144 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC----CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHH
Confidence 35789999999999999999987432 233444555433 345555555554322111 0011111
Q ss_pred ---HHHHHHHHhHhCCceEEEEEecC
Q 038637 295 ---NLLQEKLKKQLSGNKFLLVLDDV 317 (962)
Q Consensus 295 ---~~~~~~l~~~l~~kr~LlVlDdv 317 (962)
-...+.+++ ++|.+|+++||+
T Consensus 145 ~~a~~~AEyfr~--~g~~Vll~~Dsl 168 (326)
T cd01136 145 YTATAIAEYFRD--QGKDVLLLMDSL 168 (326)
T ss_pred HHHHHHHHHHHH--cCCCeEEEeccc
Confidence 122333333 589999999998
No 475
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=91.88 E-value=0.12 Score=50.64 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=20.7
Q ss_pred EEEEEEcCCCchHHHHHHHHhCc
Q 038637 229 SVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
..|.|+|+.|+||||+|+.+...
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~ 27 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHH
Confidence 46899999999999999999873
No 476
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=91.84 E-value=0.095 Score=50.81 Aligned_cols=21 Identities=29% Similarity=0.531 Sum_probs=18.6
Q ss_pred EEEEcCCCchHHHHHHHHhCc
Q 038637 231 ISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 231 i~I~G~~GiGKTtLa~~v~~~ 251 (962)
|.|+|++|+||||+|+.+...
T Consensus 1 i~l~G~~GsGKSTla~~l~~~ 21 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHR 21 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999873
No 477
>PRK13948 shikimate kinase; Provisional
Probab=91.82 E-value=0.13 Score=50.57 Aligned_cols=24 Identities=17% Similarity=0.342 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhC
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
..+.|.++|+.|+||||+++.+..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~ 32 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSR 32 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 557889999999999999999987
No 478
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=91.82 E-value=0.34 Score=54.19 Aligned_cols=90 Identities=16% Similarity=0.161 Sum_probs=54.6
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCC-HHHHHHHHHHHhccCC------CCCCccHH----
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFD-VFRVTKSILKSIANDQ------SNNDDDLN---- 295 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~-~~~~~~~il~~l~~~~------~~~~~~~~---- 295 (962)
+-.-++|.|.+|+|||+|+.++.+... +.+-+..+++-+++... ..++..++...=.... ..+.....
T Consensus 137 kGQr~~Ifg~~G~GKt~l~~~~~~~~~-~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~ 215 (449)
T TIGR03305 137 RGGKAGLFGGAGVGKTVLLTEMIHNMV-GQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRV 215 (449)
T ss_pred cCCEEEeecCCCCChhHHHHHHHHHHH-hcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHH
Confidence 345679999999999999999877532 23346778888877653 4455555544311110 00111111
Q ss_pred -HHHHHHHhHh---CCceEEEEEecC
Q 038637 296 -LLQEKLKKQL---SGNKFLLVLDDV 317 (962)
Q Consensus 296 -~~~~~l~~~l---~~kr~LlVlDdv 317 (962)
...-.+.+++ +++.+|+++||+
T Consensus 216 ~~~a~tiAEyfrd~~G~~VLl~~Dsl 241 (449)
T TIGR03305 216 GHTALTMAEYFRDDEKQDVLLLIDNI 241 (449)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecCh
Confidence 1223344554 468999999998
No 479
>PRK12678 transcription termination factor Rho; Provisional
Probab=91.82 E-value=0.43 Score=54.24 Aligned_cols=100 Identities=19% Similarity=0.181 Sum_probs=52.1
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEE-EEEeCCCCC-HHHHHHHHHHHhccCCCC
Q 038637 212 EIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKA-WACVSEDFD-VFRVTKSILKSIANDQSN 289 (962)
Q Consensus 212 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~-wv~v~~~~~-~~~~~~~il~~l~~~~~~ 289 (962)
++++.|.... .-.-..|+|++|+|||||++.|.+.. ...+-++.+ .+-|.+... +.++.+.+-.++-.....
T Consensus 405 RvIDll~PIG-----kGQR~LIvgpp~aGKTtLL~~IAn~i-~~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D 478 (672)
T PRK12678 405 RVIDLIMPIG-----KGQRGLIVSPPKAGKTTILQNIANAI-TTNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFD 478 (672)
T ss_pred eeeeeecccc-----cCCEeEEeCCCCCCHHHHHHHHHHHH-hhcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCC
Confidence 3555554432 34567899999999999999998832 112223333 444555432 223333221111111111
Q ss_pred CCccH----HHHHHHHHhHh--CCceEEEEEecC
Q 038637 290 NDDDL----NLLQEKLKKQL--SGNKFLLVLDDV 317 (962)
Q Consensus 290 ~~~~~----~~~~~~l~~~l--~~kr~LlVlDdv 317 (962)
..... ..+.-.+.+++ .++.+||++|++
T Consensus 479 ~p~~~~~~~a~~ai~~Ae~fre~G~dVlillDSl 512 (672)
T PRK12678 479 RPPSDHTTVAELAIERAKRLVELGKDVVVLLDSI 512 (672)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 11111 11222333444 689999999998
No 480
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=91.80 E-value=0.12 Score=49.43 Aligned_cols=20 Identities=45% Similarity=0.669 Sum_probs=18.7
Q ss_pred EEEEcCCCchHHHHHHHHhC
Q 038637 231 ISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 231 i~I~G~~GiGKTtLa~~v~~ 250 (962)
|.|+|++|.||||+|+.+..
T Consensus 2 i~l~G~~GsGKstla~~la~ 21 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAK 21 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 68999999999999999976
No 481
>PRK14738 gmk guanylate kinase; Provisional
Probab=91.79 E-value=0.16 Score=51.43 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=22.3
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhC
Q 038637 226 DGFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 226 ~~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
...+.|.|+|++|+|||||++.+..
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~ 35 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRE 35 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHh
Confidence 3678899999999999999999975
No 482
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=91.77 E-value=0.21 Score=54.20 Aligned_cols=44 Identities=14% Similarity=0.282 Sum_probs=34.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhC
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
+.+||.+..+..++-.+... ...-|.|.|..|+|||||++.+..
T Consensus 4 ~~ivgq~~~~~al~~~~~~~------~~g~vli~G~~G~gKttl~r~~~~ 47 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDP------KIGGVMVMGDRGTGKSTAVRALAA 47 (337)
T ss_pred cccccHHHHHHHHHHHhcCC------CCCeEEEEcCCCCCHHHHHHHHHH
Confidence 45889999888876666543 345677999999999999999975
No 483
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=91.76 E-value=0.73 Score=51.51 Aligned_cols=88 Identities=23% Similarity=0.275 Sum_probs=50.2
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCC-CCHHHHHHHHHHHhccCC-------CCCCccH----
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSED-FDVFRVTKSILKSIANDQ-------SNNDDDL---- 294 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~-~~~~~~~~~il~~l~~~~-------~~~~~~~---- 294 (962)
.-..++|+|..|.|||||++.++..... +..+..-+++. ....+.++..+..-+... .+...-.
T Consensus 155 ~Gqri~I~G~sG~GKTtLl~~Ia~~~~~----~~gvI~~iGerg~ev~e~~~~~l~~~gl~~tvvv~~tsd~s~~~r~ra 230 (432)
T PRK06793 155 IGQKIGIFAGSGVGKSTLLGMIAKNAKA----DINVISLVGERGREVKDFIRKELGEEGMRKSVVVVATSDESHLMQLRA 230 (432)
T ss_pred CCcEEEEECCCCCChHHHHHHHhccCCC----CeEEEEeCCCCcccHHHHHHHHhhhcccceeEEEEECCCCCHHHHHHH
Confidence 3467899999999999999999874321 22222233333 556666665555432111 1011111
Q ss_pred HHHHHHHHhHh--CCceEEEEEecCC
Q 038637 295 NLLQEKLKKQL--SGNKFLLVLDDVW 318 (962)
Q Consensus 295 ~~~~~~l~~~l--~~kr~LlVlDdv~ 318 (962)
......+.+++ +++..|+++||+-
T Consensus 231 ~~~a~~iAEyfr~~G~~VLlilDslT 256 (432)
T PRK06793 231 AKLATSIAEYFRDQGNNVLLMMDSVT 256 (432)
T ss_pred HHHHHHHHHHHHHcCCcEEEEecchH
Confidence 11222333333 4899999999983
No 484
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=91.76 E-value=0.39 Score=46.66 Aligned_cols=81 Identities=14% Similarity=0.138 Sum_probs=43.6
Q ss_pred EEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHhccCCC--CCCccHHHHHHHHHhHhCC
Q 038637 230 VISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSIANDQS--NNDDDLNLLQEKLKKQLSG 307 (962)
Q Consensus 230 vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~--~~~~~~~~~~~~l~~~l~~ 307 (962)
++.|.|.+|+||||+|..+.... .. ..+++.-...+ ..+..+.|......... ........+...+.....+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~--~~---~~~~iat~~~~-~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~ 76 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS--GL---QVLYIATAQPF-DDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAP 76 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc--CC---CcEeCcCCCCC-hHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCC
Confidence 68999999999999999987632 11 23344433333 33455555443322211 0111122344445443333
Q ss_pred ceEEEEEecC
Q 038637 308 NKFLLVLDDV 317 (962)
Q Consensus 308 kr~LlVlDdv 317 (962)
.-++++|.+
T Consensus 77 -~~~VlID~L 85 (170)
T PRK05800 77 -GRCVLVDCL 85 (170)
T ss_pred -CCEEEehhH
Confidence 236888887
No 485
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=91.73 E-value=0.069 Score=64.78 Aligned_cols=188 Identities=15% Similarity=0.117 Sum_probs=83.1
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHhccCC------CCCCccHHHHHHH
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSIANDQ------SNNDDDLNLLQEK 300 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~------~~~~~~~~~~~~~ 300 (962)
+.+++.|+|+.|.||||+.+.+.-..- ......+|.+..... ...+..+...++... ..-......+...
T Consensus 321 ~~~~liItGpNg~GKSTlLK~i~~~~l---~aq~G~~Vpa~~~~~-~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~i 396 (771)
T TIGR01069 321 EKRVLAITGPNTGGKTVTLKTLGLLAL---MFQSGIPIPANEHSE-IPYFEEIFADIGDEQSIEQNLSTFSGHMKNISAI 396 (771)
T ss_pred CceEEEEECCCCCCchHHHHHHHHHHH---HHHhCCCccCCcccc-ccchhheeeecChHhHHhhhhhHHHHHHHHHHHH
Confidence 347899999999999999998865310 011111222211100 001111111111100 0001111222222
Q ss_pred HHhHhCCceEEEEEecCCCC-CccchhhccCC-CCC-CCCCcEEEEEecChhhHhhhCCCCcccCCCCCH-HHHHHHHHH
Q 038637 301 LKKQLSGNKFLLVLDDVWNK-NYNYWSILSCP-FGA-GAPGSKIVVTTRNLDVANLTRAYPKYGLKELSD-DDCLRVVIQ 376 (962)
Q Consensus 301 l~~~l~~kr~LlVlDdv~~~-~~~~~~~l~~~-l~~-~~~gs~ilvTtR~~~v~~~~~~~~~~~l~~L~~-~~~~~Lf~~ 376 (962)
+.. + +.+-|+++|..-.- +......+... +.. ...|+.+|+||-..++.........+....+.- ++... |..
T Consensus 397 l~~-~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~~~~~~~~v~~~~~~~d~~~l~-p~Y 473 (771)
T TIGR01069 397 LSK-T-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKALMYNNEGVENASVLFDEETLS-PTY 473 (771)
T ss_pred HHh-c-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhcCCCCeEEeEEEEcCCCCc-eEE
Confidence 222 2 47899999998542 22222222111 111 135789999999987755432211111000000 01111 111
Q ss_pred hhcCCCCCCCCcchHHHHHHHHHhcCCChHHHHHHHhhhcCCCChhHHHHHHh
Q 038637 377 HSLGATGFSTNQSLKDVGEKIAKKCKGLPLAAKTLGGLLRGKDDLTDWEFVLN 429 (962)
Q Consensus 377 ~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~~L~~~~~~~~w~~~~~ 429 (962)
+...+ .+ -...|-.|++++ |+|-.|.--|..+... .....+.+++
T Consensus 474 kl~~G---~~---g~S~a~~iA~~~-Glp~~ii~~A~~~~~~-~~~~~~~li~ 518 (771)
T TIGR01069 474 KLLKG---IP---GESYAFEIAQRY-GIPHFIIEQAKTFYGE-FKEEINVLIE 518 (771)
T ss_pred EECCC---CC---CCcHHHHHHHHh-CcCHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 11110 01 123567777776 8888888777766543 2234444443
No 486
>PRK06761 hypothetical protein; Provisional
Probab=91.70 E-value=0.24 Score=52.07 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=21.3
Q ss_pred EEEEEEcCCCchHHHHHHHHhCc
Q 038637 229 SVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
++|.|.|++|+||||+|+.+++.
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~ 26 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDI 26 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999984
No 487
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=91.67 E-value=0.14 Score=51.87 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=23.5
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 226 DGFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 226 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
.++++|+++|+.|+|||||..++...
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~ 45 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDN 45 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999998763
No 488
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=91.66 E-value=0.1 Score=52.71 Aligned_cols=22 Identities=23% Similarity=0.194 Sum_probs=20.4
Q ss_pred EEEEEEcCCCchHHHHHHHHhC
Q 038637 229 SVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
.+++|+|+.|.||||+.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 6899999999999999999984
No 489
>PRK13975 thymidylate kinase; Provisional
Probab=91.64 E-value=0.13 Score=51.65 Aligned_cols=23 Identities=39% Similarity=0.609 Sum_probs=21.1
Q ss_pred EEEEEEcCCCchHHHHHHHHhCc
Q 038637 229 SVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
..|.|.|+.|+||||+|+.+...
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~ 25 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEK 25 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999874
No 490
>PRK09099 type III secretion system ATPase; Provisional
Probab=91.63 E-value=0.69 Score=51.90 Aligned_cols=87 Identities=18% Similarity=0.270 Sum_probs=48.7
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCC-CCHHHHHHHHHHHhccCC------CCCCccHHH---
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSED-FDVFRVTKSILKSIANDQ------SNNDDDLNL--- 296 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~-~~~~~~~~~il~~l~~~~------~~~~~~~~~--- 296 (962)
+-..++|.|..|+|||||++.+...... +..+.+-+++. ....++.+.+...-.... ..+......
T Consensus 162 ~Gq~~~I~G~sG~GKTtLl~~ia~~~~~----d~~vi~~iGer~~ev~ef~~~~~~~~~l~rtvvv~~tsd~p~~~r~~a 237 (441)
T PRK09099 162 EGQRMGIFAPAGVGKSTLMGMFARGTQC----DVNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKA 237 (441)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCC----CeEEEEEEccChHHHHHHHHHHhhcCCcceEEEEEECCCCCHHHHHHH
Confidence 4468899999999999999999874321 23333444443 344455455543321110 001111111
Q ss_pred --HHHHHHhHh--CCceEEEEEecC
Q 038637 297 --LQEKLKKQL--SGNKFLLVLDDV 317 (962)
Q Consensus 297 --~~~~l~~~l--~~kr~LlVlDdv 317 (962)
..-.+.+++ +++.+|+++||+
T Consensus 238 ~~~a~tiAEyfrd~G~~VLl~~Dsl 262 (441)
T PRK09099 238 AYVATAIAEYFRDRGLRVLLMMDSL 262 (441)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccch
Confidence 112233333 589999999998
No 491
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=91.61 E-value=0.65 Score=41.83 Aligned_cols=21 Identities=57% Similarity=0.830 Sum_probs=18.9
Q ss_pred EEEEcCCCchHHHHHHHHhCc
Q 038637 231 ISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 231 i~I~G~~GiGKTtLa~~v~~~ 251 (962)
|.+.|.||+||||++..++..
T Consensus 2 i~~~GkgG~GKTt~a~~la~~ 22 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARY 22 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999988773
No 492
>PLN02318 phosphoribulokinase/uridine kinase
Probab=91.61 E-value=0.22 Score=57.09 Aligned_cols=25 Identities=36% Similarity=0.688 Sum_probs=22.9
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhC
Q 038637 226 DGFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 226 ~~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
.+..+|+|.|+.|.||||||+.+..
T Consensus 63 ~~riIIGIaGpSGSGKTTLAk~Lag 87 (656)
T PLN02318 63 DGIILVGVAGPSGAGKTVFTEKVLN 87 (656)
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHh
Confidence 3678999999999999999999986
No 493
>PRK14527 adenylate kinase; Provisional
Probab=91.59 E-value=0.15 Score=50.93 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
...+|.|+|++|+||||+|+.++..
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~ 29 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQE 29 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999998763
No 494
>COG4639 Predicted kinase [General function prediction only]
Probab=91.57 E-value=0.16 Score=47.05 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=19.5
Q ss_pred cEEEEEEcCCCchHHHHHHHHhC
Q 038637 228 FSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
...|.+.|.+|+||+|.|+.-+.
T Consensus 2 ~~LvvL~G~~~sGKsT~ak~n~~ 24 (168)
T COG4639 2 RILVVLRGASGSGKSTFAKENFL 24 (168)
T ss_pred ceEEEEecCCCCchhHHHHHhCC
Confidence 36789999999999999988443
No 495
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=91.56 E-value=0.13 Score=56.56 Aligned_cols=77 Identities=22% Similarity=0.304 Sum_probs=45.7
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccch----hcccceEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCccHHHHHHHHH
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRV----QRHFQFKAWACVSEDFDVFRVTKSILKSIANDQSNNDDDLNLLQEKLK 302 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~----~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~ 302 (962)
..+=+.|+|..|.|||.|...+|+...+ +-||. ....++-+.+..-.. ....+.. +.
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh--------------~Fm~~vh~~l~~~~~-~~~~l~~----va 121 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFH--------------EFMLDVHSRLHQLRG-QDDPLPQ----VA 121 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCcccccccccc--------------HHHHHHHHHHHHHhC-CCccHHH----HH
Confidence 5677899999999999999999986433 22332 222333333322111 2222333 33
Q ss_pred hHhCCceEEEEEecCCCCCc
Q 038637 303 KQLSGNKFLLVLDDVWNKNY 322 (962)
Q Consensus 303 ~~l~~kr~LlVlDdv~~~~~ 322 (962)
+.+.++..||.||...-.+.
T Consensus 122 ~~l~~~~~lLcfDEF~V~Di 141 (362)
T PF03969_consen 122 DELAKESRLLCFDEFQVTDI 141 (362)
T ss_pred HHHHhcCCEEEEeeeeccch
Confidence 44456677999999855443
No 496
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=91.56 E-value=0.18 Score=54.69 Aligned_cols=46 Identities=17% Similarity=0.276 Sum_probs=36.5
Q ss_pred cCCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhC
Q 038637 199 NEAEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 199 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
+-+.+||.++.+..|...+... ...-|.|.|..|.||||+|+.++.
T Consensus 15 pf~~ivGq~~~k~al~~~~~~p------~~~~vli~G~~GtGKs~~ar~~~~ 60 (350)
T CHL00081 15 PFTAIVGQEEMKLALILNVIDP------KIGGVMIMGDRGTGKSTTIRALVD 60 (350)
T ss_pred CHHHHhChHHHHHHHHHhccCC------CCCeEEEEcCCCCCHHHHHHHHHH
Confidence 3467999998888877766443 445677999999999999999966
No 497
>PRK08472 fliI flagellum-specific ATP synthase; Validated
Probab=91.56 E-value=0.67 Score=51.85 Aligned_cols=40 Identities=25% Similarity=0.184 Sum_probs=28.4
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCC
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDF 270 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~ 270 (962)
+-..++|+|..|+|||||++.+..... -+..+...+++..
T Consensus 156 ~Gq~~~i~G~sG~GKStLl~~i~~~~~----~~v~vi~~iGerg 195 (434)
T PRK08472 156 KGQKLGIFAGSGVGKSTLMGMIVKGCL----APIKVVALIGERG 195 (434)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhccC----CCEEEEEeeCccc
Confidence 346889999999999999999986321 2344455555554
No 498
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=91.56 E-value=0.9 Score=47.30 Aligned_cols=53 Identities=15% Similarity=0.083 Sum_probs=35.9
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHH
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKS 282 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~ 282 (962)
.-.++.|.|.+|+|||++|..++.+.-. .+=..++|++... +..++...++..
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~-~~g~~vly~s~E~--~~~~~~~r~~~~ 64 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAK-KQGKPVLFFSLEM--SKEQLLQRLLAS 64 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHH-hCCCceEEEeCCC--CHHHHHHHHHHH
Confidence 4478999999999999999988764322 2123566776555 456666666544
No 499
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=91.55 E-value=0.25 Score=57.17 Aligned_cols=47 Identities=21% Similarity=0.231 Sum_probs=37.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
..++|....++++.+.+..-.. .-.-|.|.|..|+||+++|+.+++.
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~A~----~~~pVLI~GE~GTGKe~lA~~IH~~ 258 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLYAR----SDATVLILGESGTGKELVAQAIHQL 258 (526)
T ss_pred hheeeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCcCHHHHHHHHHHh
Confidence 3589999988888888754321 2356789999999999999999864
No 500
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=91.54 E-value=1.1 Score=42.36 Aligned_cols=84 Identities=14% Similarity=0.127 Sum_probs=50.5
Q ss_pred CHHHHHHHHHHHhccCCCC-----CCccHHHHHHHHHhHhCCceEEEEEecCCC----CCccchhhccCCCCCCCCCcEE
Q 038637 271 DVFRVTKSILKSIANDQSN-----NDDDLNLLQEKLKKQLSGNKFLLVLDDVWN----KNYNYWSILSCPFGAGAPGSKI 341 (962)
Q Consensus 271 ~~~~~~~~il~~l~~~~~~-----~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~----~~~~~~~~l~~~l~~~~~gs~i 341 (962)
+.....+..+++++....- +-..-++-.-.|.+.+...+-+++-|.--. ..-....++...+ ....|+..
T Consensus 122 ~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~l-nre~G~Tl 200 (228)
T COG4181 122 DSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFAL-NRERGTTL 200 (228)
T ss_pred cHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHH-hhhcCceE
Confidence 5566678888888764421 222234444567777788888888776421 1112222333332 23478888
Q ss_pred EEEecChhhHhhhC
Q 038637 342 VVTTRNLDVANLTR 355 (962)
Q Consensus 342 lvTtR~~~v~~~~~ 355 (962)
|+-|-+..+|..|.
T Consensus 201 VlVTHD~~LA~Rc~ 214 (228)
T COG4181 201 VLVTHDPQLAARCD 214 (228)
T ss_pred EEEeCCHHHHHhhh
Confidence 88899999988765
Done!