Query 038637
Match_columns 962
No_of_seqs 535 out of 4354
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 22:53:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038637.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038637hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 2.2E-48 7.6E-53 455.6 27.3 317 204-543 131-473 (549)
2 1vt4_I APAF-1 related killer D 100.0 3.3E-39 1.1E-43 378.4 17.7 286 203-535 130-437 (1221)
3 3sfz_A APAF-1, apoptotic pepti 100.0 1.8E-37 6E-42 404.4 24.3 310 200-541 123-452 (1249)
4 1z6t_A APAF-1, apoptotic prote 100.0 3.7E-34 1.3E-38 341.1 22.7 305 201-539 124-450 (591)
5 3vq2_A TLR4, TOLL-like recepto 99.9 2.8E-24 9.5E-29 257.3 22.0 147 557-712 30-179 (606)
6 3rgz_A Protein brassinosteroid 99.9 8.5E-25 2.9E-29 267.9 17.2 346 583-960 293-715 (768)
7 3rgz_A Protein brassinosteroid 99.9 1.4E-24 4.9E-29 265.8 18.8 348 582-960 267-691 (768)
8 4eco_A Uncharacterized protein 99.9 1.4E-24 4.9E-29 259.5 14.8 322 606-960 198-577 (636)
9 4ecn_A Leucine-rich repeat pro 99.9 2.6E-24 8.8E-29 261.2 16.9 321 606-960 440-817 (876)
10 4ecn_A Leucine-rich repeat pro 99.9 1.3E-23 4.4E-28 255.1 19.5 305 613-939 489-838 (876)
11 4eco_A Uncharacterized protein 99.9 9.4E-24 3.2E-28 252.4 16.1 344 582-962 247-632 (636)
12 3t6q_A CD180 antigen; protein- 99.9 1.5E-22 5.1E-27 242.3 25.2 147 557-713 31-180 (606)
13 3o6n_A APL1; leucine-rich repe 99.9 5.3E-23 1.8E-27 231.6 20.0 303 582-939 43-350 (390)
14 3vq2_A TLR4, TOLL-like recepto 99.9 1.8E-22 6.2E-27 241.6 24.9 351 584-960 32-459 (606)
15 1o6v_A Internalin A; bacterial 99.9 2.7E-22 9.3E-27 231.2 24.9 338 559-960 46-386 (466)
16 1o6v_A Internalin A; bacterial 99.9 1.8E-22 6.1E-27 232.8 23.0 319 582-960 44-364 (466)
17 3oja_B Anopheles plasmodium-re 99.9 8.3E-23 2.8E-27 242.9 19.6 303 582-939 49-356 (597)
18 2z7x_B TOLL-like receptor 1, v 99.9 1.9E-22 6.7E-27 236.4 22.2 121 584-717 21-145 (520)
19 4fmz_A Internalin; leucine ric 99.9 1.5E-22 5.2E-27 224.1 19.8 302 579-960 39-344 (347)
20 3t6q_A CD180 antigen; protein- 99.9 3.7E-22 1.3E-26 238.9 24.2 123 584-716 33-159 (606)
21 3j0a_A TOLL-like receptor 5; m 99.9 8.8E-22 3E-26 243.7 27.9 361 557-959 22-461 (844)
22 2z81_A CD282 antigen, TOLL-lik 99.9 1.2E-22 4.1E-27 240.1 19.1 149 558-715 25-177 (549)
23 2z7x_B TOLL-like receptor 1, v 99.9 4.2E-22 1.4E-26 233.6 23.1 369 557-960 19-479 (520)
24 2z63_A TOLL-like receptor 4, v 99.9 3.8E-22 1.3E-26 237.0 23.0 369 557-960 26-481 (570)
25 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 1E-21 3.6E-26 232.2 24.1 118 584-715 52-174 (562)
26 2z63_A TOLL-like receptor 4, v 99.9 6.5E-22 2.2E-26 235.1 21.4 366 559-960 52-529 (570)
27 3v47_A TOLL-like receptor 5B a 99.9 2.3E-21 8E-26 223.2 25.0 125 823-960 275-406 (455)
28 4fmz_A Internalin; leucine ric 99.9 1.7E-21 5.8E-26 215.7 21.3 301 558-939 43-344 (347)
29 3bz5_A Internalin-J, INLJ; leu 99.9 1.9E-21 6.6E-26 222.2 21.6 301 579-939 37-350 (457)
30 2z81_A CD282 antigen, TOLL-lik 99.9 1.2E-21 4.2E-26 231.4 19.6 150 584-744 26-180 (549)
31 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 8.1E-21 2.8E-25 224.5 24.6 352 557-960 50-508 (562)
32 3j0a_A TOLL-like receptor 5; m 99.9 9.9E-21 3.4E-25 234.3 26.2 349 582-960 22-437 (844)
33 1ziw_A TOLL-like receptor 3; i 99.9 4.6E-21 1.6E-25 232.6 22.7 149 557-715 23-176 (680)
34 3v47_A TOLL-like receptor 5B a 99.9 4.8E-21 1.6E-25 220.6 20.6 353 557-939 28-406 (455)
35 2id5_A Lingo-1, leucine rich r 99.9 2.1E-20 7E-25 216.6 23.4 297 584-917 32-331 (477)
36 4fcg_A Uncharacterized protein 99.9 3.6E-21 1.2E-25 210.3 15.8 93 613-707 79-171 (328)
37 3bz5_A Internalin-J, INLJ; leu 99.8 2.6E-20 9E-25 212.8 22.0 299 559-920 42-352 (457)
38 1ziw_A TOLL-like receptor 3; i 99.8 3.7E-20 1.3E-24 224.6 22.9 125 584-717 25-152 (680)
39 2id5_A Lingo-1, leucine rich r 99.8 4.4E-20 1.5E-24 213.8 22.3 290 615-939 32-331 (477)
40 3o6n_A APL1; leucine-rich repe 99.8 5.1E-20 1.8E-24 207.2 20.4 302 559-920 45-352 (390)
41 2ft3_A Biglycan; proteoglycan, 99.8 2.5E-19 8.4E-24 196.7 20.1 280 616-961 34-332 (332)
42 3oja_B Anopheles plasmodium-re 99.8 1.3E-19 4.5E-24 215.3 19.0 303 559-917 51-356 (597)
43 4g8a_A TOLL-like receptor 4; l 99.8 3.8E-19 1.3E-23 214.2 22.2 379 557-960 50-578 (635)
44 1xku_A Decorin; proteoglycan, 99.8 9.5E-19 3.2E-23 191.9 21.6 279 616-959 32-329 (330)
45 4fcg_A Uncharacterized protein 99.8 1.4E-19 4.9E-24 197.5 13.0 228 637-936 79-309 (328)
46 1ogq_A PGIP-2, polygalacturona 99.8 5.4E-20 1.8E-24 199.7 8.3 125 584-715 50-179 (313)
47 1ogq_A PGIP-2, polygalacturona 99.8 7.5E-20 2.6E-24 198.6 8.3 149 559-715 50-202 (313)
48 4g8a_A TOLL-like receptor 4; l 99.8 1.1E-18 3.6E-23 210.3 18.6 353 584-960 52-553 (635)
49 1xku_A Decorin; proteoglycan, 99.8 2.3E-18 7.8E-23 188.9 17.3 97 615-715 52-150 (330)
50 2ft3_A Biglycan; proteoglycan, 99.8 2.8E-18 9.6E-23 188.3 16.7 268 615-939 54-331 (332)
51 1jl5_A Outer protein YOPM; leu 99.8 1.1E-17 3.7E-22 190.9 21.9 288 615-960 91-407 (454)
52 1jl5_A Outer protein YOPM; leu 99.8 2.4E-18 8.3E-23 196.3 15.9 227 582-857 9-248 (454)
53 3g06_A SSPH2 (leucine-rich rep 99.8 1.9E-17 6.4E-22 194.7 23.5 71 617-697 42-112 (622)
54 1z7x_W Ribonuclease inhibitor; 99.7 1.1E-19 3.9E-24 209.5 -7.3 385 559-960 3-438 (461)
55 2z66_A Variable lymphocyte rec 99.7 4.1E-17 1.4E-21 176.8 13.1 224 614-887 27-259 (306)
56 3ogk_B Coronatine-insensitive 99.7 3.4E-18 1.1E-22 203.9 4.7 345 585-960 139-524 (592)
57 3zyi_A Leucine-rich repeat-con 99.7 1.8E-16 6.2E-21 181.7 18.9 221 615-887 75-301 (452)
58 3g06_A SSPH2 (leucine-rich rep 99.7 4E-16 1.4E-20 183.3 21.1 101 798-924 201-301 (622)
59 2z66_A Variable lymphocyte rec 99.7 7.9E-17 2.7E-21 174.5 13.6 225 584-857 28-259 (306)
60 3o53_A Protein LRIM1, AGAP0063 99.7 4.6E-18 1.6E-22 185.0 3.7 257 606-927 25-283 (317)
61 3zyj_A Leucine-rich repeat-con 99.7 4.5E-16 1.5E-20 177.8 20.0 221 615-887 64-290 (440)
62 2z80_A TOLL-like receptor 2, v 99.7 9.3E-17 3.2E-21 177.7 12.6 207 604-856 44-259 (353)
63 1z7x_W Ribonuclease inhibitor; 99.7 6.2E-19 2.1E-23 203.4 -5.4 355 584-960 3-409 (461)
64 2z80_A TOLL-like receptor 2, v 99.7 1.1E-16 3.7E-21 177.2 12.9 249 584-887 52-312 (353)
65 3ogk_B Coronatine-insensitive 99.7 1E-18 3.5E-23 208.5 -4.0 350 582-960 110-499 (592)
66 3zyj_A Leucine-rich repeat-con 99.7 1.3E-15 4.5E-20 173.8 20.7 242 617-917 45-290 (440)
67 1ozn_A Reticulon 4 receptor; N 99.7 8.7E-17 3E-21 172.2 10.1 201 614-887 31-236 (285)
68 3zyi_A Leucine-rich repeat-con 99.7 7.4E-16 2.5E-20 176.6 16.8 221 584-857 75-301 (452)
69 3qfl_A MLA10; coiled-coil, (CC 99.7 7.2E-17 2.4E-21 143.5 6.4 80 12-91 2-83 (115)
70 2p1m_B Transport inhibitor res 99.6 5E-18 1.7E-22 202.6 -3.3 372 559-961 105-518 (594)
71 3o53_A Protein LRIM1, AGAP0063 99.6 1.2E-16 4.1E-21 173.8 7.6 246 581-892 31-278 (317)
72 1w5s_A Origin recognition comp 99.6 1.7E-15 5.8E-20 171.6 17.2 314 201-530 22-387 (412)
73 3oja_A Leucine-rich immune mol 99.6 1.3E-16 4.4E-21 183.9 5.4 239 613-916 32-272 (487)
74 1ozn_A Reticulon 4 receptor; N 99.6 5E-15 1.7E-19 158.4 17.5 219 618-917 14-236 (285)
75 2qen_A Walker-type ATPase; unk 99.6 9.6E-15 3.3E-19 161.5 18.2 292 199-535 10-349 (350)
76 2ast_B S-phase kinase-associat 99.6 1.3E-16 4.6E-21 175.3 1.4 236 615-929 70-315 (336)
77 3oja_A Leucine-rich immune mol 99.6 8.3E-16 2.8E-20 177.1 7.6 238 582-885 32-271 (487)
78 3rfs_A Internalin B, repeat mo 99.6 1.7E-14 5.8E-19 153.0 16.0 82 612-697 38-120 (272)
79 1wwl_A Monocyte differentiatio 99.6 4.1E-15 1.4E-19 161.2 10.4 78 637-715 93-178 (312)
80 1h6u_A Internalin H; cell adhe 99.6 5.1E-15 1.7E-19 160.0 11.0 190 613-857 39-228 (308)
81 2o6q_A Variable lymphocyte rec 99.6 3.2E-14 1.1E-18 150.8 16.9 77 617-697 18-96 (270)
82 1p9a_G Platelet glycoprotein I 99.6 2.4E-14 8.2E-19 153.0 15.4 63 794-857 144-206 (290)
83 2fna_A Conserved hypothetical 99.6 7.5E-14 2.6E-18 154.7 19.9 292 199-534 11-356 (357)
84 1wwl_A Monocyte differentiatio 99.6 8.9E-16 3E-20 166.5 3.2 248 611-920 39-309 (312)
85 2xwt_C Thyrotropin receptor; s 99.5 8.1E-14 2.8E-18 144.7 17.4 65 628-695 23-89 (239)
86 1p9a_G Platelet glycoprotein I 99.5 4.5E-14 1.5E-18 150.9 15.2 79 616-697 32-111 (290)
87 2z62_A TOLL-like receptor 4, v 99.5 2E-14 6.9E-19 152.9 12.5 202 615-857 28-235 (276)
88 4ay9_X Follicle-stimulating ho 99.5 1.5E-13 5E-18 151.5 19.7 237 618-937 12-255 (350)
89 2xwt_C Thyrotropin receptor; s 99.5 6.4E-14 2.2E-18 145.5 14.6 94 615-711 31-128 (239)
90 2p1m_B Transport inhibitor res 99.5 3.5E-16 1.2E-20 186.6 -3.0 355 559-941 130-519 (594)
91 2o6q_A Variable lymphocyte rec 99.5 1.8E-13 6.3E-18 144.8 16.1 175 615-857 37-216 (270)
92 2z62_A TOLL-like receptor 4, v 99.5 7.1E-14 2.4E-18 148.7 12.6 206 584-837 28-238 (276)
93 4ay9_X Follicle-stimulating ho 99.5 7.5E-13 2.6E-17 145.8 18.4 226 604-915 22-255 (350)
94 2ca6_A RAN GTPase-activating p 99.5 2.7E-15 9.3E-20 168.2 -1.5 87 611-698 28-134 (386)
95 1h6u_A Internalin H; cell adhe 99.5 1.7E-13 5.6E-18 148.1 11.9 192 635-887 37-228 (308)
96 4glp_A Monocyte differentiatio 99.4 3.4E-13 1.1E-17 146.0 13.1 202 614-857 90-305 (310)
97 3rfs_A Internalin B, repeat mo 99.4 1.9E-13 6.5E-18 144.9 10.6 111 580-703 37-149 (272)
98 2ast_B S-phase kinase-associat 99.4 1.6E-14 5.3E-19 158.8 1.6 104 584-696 70-178 (336)
99 2qby_B CDC6 homolog 3, cell di 99.4 1.5E-11 5.1E-16 137.6 23.0 292 201-518 20-340 (384)
100 1h6t_A Internalin B; cell adhe 99.4 8.5E-13 2.9E-17 141.1 11.7 169 612-857 43-211 (291)
101 3m19_A Variable lymphocyte rec 99.4 2.4E-12 8.3E-17 134.5 14.6 171 616-857 15-190 (251)
102 2v1u_A Cell division control p 99.4 1.8E-11 6.1E-16 137.2 22.6 295 201-517 19-351 (387)
103 1fnn_A CDC6P, cell division co 99.4 2.4E-11 8E-16 136.3 22.8 298 201-518 17-352 (389)
104 2ca6_A RAN GTPase-activating p 99.3 1.6E-13 5.4E-18 153.7 2.5 239 579-857 27-314 (386)
105 3cvr_A Invasion plasmid antige 99.3 2.5E-12 8.5E-17 149.2 11.1 177 616-860 60-244 (571)
106 1m9s_A Internalin B; cell inva 99.3 1E-12 3.5E-17 154.3 7.5 97 612-715 40-136 (605)
107 1m9s_A Internalin B; cell inva 99.3 1.8E-12 6.3E-17 152.1 8.7 104 580-697 39-142 (605)
108 3m19_A Variable lymphocyte rec 99.3 1.5E-11 5.3E-16 128.4 14.4 175 639-887 14-190 (251)
109 2qby_A CDC6 homolog 1, cell di 99.3 2.1E-11 7E-16 136.6 16.0 296 200-517 19-348 (386)
110 4glp_A Monocyte differentiatio 99.3 2.3E-12 8E-17 139.4 7.7 205 582-837 89-308 (310)
111 4ezg_A Putative uncharacterize 99.3 3.9E-12 1.3E-16 127.4 8.7 59 795-857 133-192 (197)
112 1h6t_A Internalin B; cell adhe 99.3 1.5E-11 5.2E-16 131.3 12.3 185 618-887 27-211 (291)
113 1xeu_A Internalin C; cellular 99.3 5.6E-12 1.9E-16 132.4 7.6 166 614-857 18-183 (263)
114 3goz_A Leucine-rich repeat-con 99.2 4.1E-13 1.4E-17 148.8 -1.4 214 608-857 15-264 (362)
115 4ezg_A Putative uncharacterize 99.2 1.6E-11 5.4E-16 123.0 9.6 100 613-715 42-141 (197)
116 3cvr_A Invasion plasmid antige 99.2 1.4E-11 5E-16 142.7 9.9 183 585-840 60-247 (571)
117 3e6j_A Variable lymphocyte rec 99.2 1.3E-10 4.5E-15 119.2 14.9 77 617-697 21-99 (229)
118 2v9t_B SLIT homolog 2 protein 99.2 1.7E-10 5.7E-15 117.6 15.5 81 618-703 14-96 (220)
119 3goz_A Leucine-rich repeat-con 99.2 5.7E-12 2E-16 139.5 3.9 233 582-857 20-295 (362)
120 1njg_A DNA polymerase III subu 99.2 1.7E-10 5.7E-15 120.1 14.4 198 201-415 23-231 (250)
121 1dce_A Protein (RAB geranylger 99.2 1.4E-13 4.7E-18 160.7 -11.3 214 635-934 345-566 (567)
122 1xeu_A Internalin C; cellular 99.1 9E-11 3.1E-15 123.2 9.5 97 611-715 37-133 (263)
123 2je0_A Acidic leucine-rich nuc 99.1 8.5E-11 2.9E-15 111.7 7.8 123 583-716 16-146 (149)
124 2xot_A Amphoterin-induced prot 99.1 8.8E-11 3E-15 129.8 9.0 76 618-697 21-99 (361)
125 2o6s_A Variable lymphocyte rec 99.1 1.3E-10 4.4E-15 117.5 9.3 75 619-697 11-87 (208)
126 2ell_A Acidic leucine-rich nuc 99.1 1.2E-10 4E-15 113.3 8.7 126 583-719 23-156 (168)
127 3e6j_A Variable lymphocyte rec 99.1 2.9E-10 9.9E-15 116.6 11.6 122 584-715 40-164 (229)
128 1a9n_A U2A', U2A'; complex (nu 99.1 1.7E-10 5.7E-15 113.2 9.2 129 578-718 13-148 (176)
129 2v9t_B SLIT homolog 2 protein 99.1 2.8E-10 9.5E-15 115.9 10.9 122 584-715 32-157 (220)
130 2v70_A SLIT-2, SLIT homolog 2 99.1 3.4E-10 1.2E-14 115.3 10.4 123 585-715 33-158 (220)
131 2chg_A Replication factor C sm 99.1 1.7E-09 5.9E-14 110.5 15.2 185 201-412 17-204 (226)
132 4b8c_D Glucose-repressible alc 99.0 3.2E-10 1.1E-14 136.7 9.5 117 580-706 220-336 (727)
133 2ell_A Acidic leucine-rich nuc 99.0 4.2E-10 1.4E-14 109.3 8.7 137 557-705 22-165 (168)
134 2o6s_A Variable lymphocyte rec 99.0 1.3E-09 4.5E-14 110.0 11.7 122 584-715 28-153 (208)
135 2v70_A SLIT-2, SLIT homolog 2 99.0 1.1E-09 3.8E-14 111.5 11.2 132 558-698 31-165 (220)
136 1dce_A Protein (RAB geranylger 99.0 1E-09 3.5E-14 127.9 10.4 117 586-715 443-565 (567)
137 2je0_A Acidic leucine-rich nuc 99.0 2.6E-10 9E-15 108.3 4.5 100 613-716 15-119 (149)
138 4b8c_D Glucose-repressible alc 98.9 6E-10 2E-14 134.3 7.1 106 607-715 216-321 (727)
139 1w8a_A SLIT protein; signaling 98.9 3.3E-09 1.1E-13 105.4 10.1 98 616-715 30-131 (192)
140 1hqc_A RUVB; extended AAA-ATPa 98.9 2.3E-09 7.7E-14 116.6 9.3 268 201-516 12-324 (324)
141 1sxj_B Activator 1 37 kDa subu 98.9 7.1E-09 2.4E-13 112.7 12.8 186 201-413 21-211 (323)
142 3sb4_A Hypothetical leucine ri 98.9 1.6E-08 5.6E-13 110.0 14.1 96 614-715 48-153 (329)
143 1a9n_A U2A', U2A'; complex (nu 98.8 2.2E-09 7.6E-14 105.0 6.3 100 611-715 15-118 (176)
144 2wfh_A SLIT homolog 2 protein 98.8 7.7E-09 2.6E-13 102.7 10.0 98 615-715 31-131 (193)
145 2xot_A Amphoterin-induced prot 98.8 9.8E-09 3.3E-13 113.3 11.0 122 584-715 39-168 (361)
146 1w8a_A SLIT protein; signaling 98.8 1.2E-08 4.1E-13 101.3 10.3 95 618-716 11-108 (192)
147 2r9u_A Variable lymphocyte rec 98.8 6.5E-09 2.2E-13 101.2 8.0 89 615-706 33-124 (174)
148 2wfh_A SLIT homolog 2 protein 98.8 2E-08 6.8E-13 99.7 11.3 94 618-716 13-108 (193)
149 2o6r_A Variable lymphocyte rec 98.8 1.4E-08 4.9E-13 99.3 9.8 86 610-697 47-135 (177)
150 1ds9_A Outer arm dynein; leuci 98.7 2.4E-10 8.2E-15 114.4 -4.5 125 579-715 43-179 (198)
151 2r9u_A Variable lymphocyte rec 98.7 2.1E-08 7.2E-13 97.6 9.2 95 617-716 14-111 (174)
152 3g39_A Variable lymphocyte rec 98.7 3.8E-08 1.3E-12 95.4 9.2 81 615-697 30-113 (170)
153 3g39_A Variable lymphocyte rec 98.7 3.7E-08 1.3E-12 95.5 9.2 97 616-717 10-109 (170)
154 1iqp_A RFCS; clamp loader, ext 98.7 7E-08 2.4E-12 104.9 11.7 187 201-414 25-214 (327)
155 1ds9_A Outer arm dynein; leuci 98.7 7.6E-10 2.6E-14 110.7 -4.0 101 610-715 43-145 (198)
156 3sb4_A Hypothetical leucine ri 98.6 2.4E-08 8.2E-13 108.6 6.4 271 614-924 24-313 (329)
157 2o6r_A Variable lymphocyte rec 98.6 9.1E-08 3.1E-12 93.6 9.9 100 614-716 27-130 (177)
158 3te6_A Regulatory protein SIR3 98.6 3.2E-07 1.1E-11 97.0 12.7 172 202-379 21-212 (318)
159 1jr3_A DNA polymerase III subu 98.5 4.3E-07 1.5E-11 100.7 12.9 196 201-412 16-221 (373)
160 2chq_A Replication factor C sm 98.5 6.9E-07 2.4E-11 96.6 13.6 182 201-412 17-204 (319)
161 4fs7_A Uncharacterized protein 98.5 1.2E-05 4E-10 89.6 22.9 320 578-954 65-393 (394)
162 4fdw_A Leucine rich hypothetic 98.5 8.5E-06 2.9E-10 90.5 21.3 84 606-695 127-212 (401)
163 4fdw_A Leucine rich hypothetic 98.5 3.5E-06 1.2E-10 93.6 18.1 103 580-696 132-236 (401)
164 2ifg_A High affinity nerve gro 98.4 6.3E-07 2.2E-11 98.2 9.0 89 605-697 23-114 (347)
165 2ifg_A High affinity nerve gro 98.3 9E-07 3.1E-11 97.0 9.3 95 619-716 12-109 (347)
166 1jbk_A CLPB protein; beta barr 98.3 4.7E-07 1.6E-11 89.7 5.7 45 201-251 22-66 (195)
167 1sxj_D Activator 1 41 kDa subu 98.2 4.4E-06 1.5E-10 91.7 11.7 196 201-412 37-235 (353)
168 3pfi_A Holliday junction ATP-d 98.2 1.4E-05 4.8E-10 86.9 15.3 177 201-411 29-226 (338)
169 3bos_A Putative DNA replicatio 98.2 1E-06 3.5E-11 90.9 5.5 174 201-412 28-217 (242)
170 3pvs_A Replication-associated 98.1 1.3E-05 4.4E-10 89.9 12.8 179 201-412 26-215 (447)
171 2ra8_A Uncharacterized protein 98.1 5.6E-07 1.9E-11 98.1 1.3 134 794-939 168-318 (362)
172 3h4m_A Proteasome-activating n 98.1 1.1E-05 3.8E-10 85.4 11.1 185 200-410 16-229 (285)
173 2z4s_A Chromosomal replication 98.1 2E-05 6.9E-10 88.5 13.2 160 228-409 130-303 (440)
174 1a5t_A Delta prime, HOLB; zinc 98.1 4.7E-05 1.6E-09 82.4 15.3 172 207-412 8-205 (334)
175 3uk6_A RUVB-like 2; hexameric 98.0 5E-05 1.7E-09 83.7 15.7 195 201-410 44-301 (368)
176 2qz4_A Paraplegin; AAA+, SPG7, 98.0 1.1E-05 3.9E-10 84.1 9.9 187 201-411 6-221 (262)
177 2ra8_A Uncharacterized protein 98.0 1.3E-06 4.4E-11 95.2 2.6 129 821-960 170-318 (362)
178 1sxj_A Activator 1 95 kDa subu 98.0 1.5E-05 5.1E-10 91.8 11.5 198 201-413 39-254 (516)
179 1sxj_E Activator 1 40 kDa subu 98.0 1.7E-05 5.8E-10 87.0 10.6 195 201-412 14-237 (354)
180 3e4g_A ATP synthase subunit S, 98.0 2.8E-06 9.4E-11 81.0 3.5 92 823-920 61-153 (176)
181 3u61_B DNA polymerase accessor 98.0 2.5E-05 8.4E-10 84.4 11.2 174 201-408 26-212 (324)
182 1d2n_A N-ethylmaleimide-sensit 97.9 0.00015 5.3E-09 75.8 15.0 196 202-430 34-260 (272)
183 3e4g_A ATP synthase subunit S, 97.9 4.8E-06 1.6E-10 79.3 2.9 86 846-942 61-153 (176)
184 3syl_A Protein CBBX; photosynt 97.9 2.8E-05 9.5E-10 83.4 9.1 161 202-379 32-218 (309)
185 2p65_A Hypothetical protein PF 97.8 1.4E-05 4.8E-10 78.4 5.6 45 201-251 22-66 (187)
186 4fs7_A Uncharacterized protein 97.8 0.00074 2.5E-08 74.9 19.9 282 578-915 88-375 (394)
187 1sxj_C Activator 1 40 kDa subu 97.8 9.7E-05 3.3E-09 80.2 12.2 182 201-409 25-209 (340)
188 3eie_A Vacuolar protein sortin 97.8 0.00019 6.5E-09 77.2 14.2 185 201-412 18-228 (322)
189 1l8q_A Chromosomal replication 97.8 0.00014 4.9E-09 78.3 12.9 155 227-406 36-202 (324)
190 3n70_A Transport activator; si 97.8 2.2E-05 7.5E-10 73.4 5.4 114 202-347 2-115 (145)
191 4gt6_A Cell surface protein; l 97.7 0.0022 7.7E-08 71.0 22.5 107 579-696 58-170 (394)
192 3un9_A NLR family member X1; l 97.7 3.5E-06 1.2E-10 92.6 -0.7 81 615-697 72-166 (372)
193 1xwi_A SKD1 protein; VPS4B, AA 97.7 0.00054 1.9E-08 73.4 16.2 188 201-412 12-223 (322)
194 2qp9_X Vacuolar protein sortin 97.7 0.00019 6.6E-09 78.1 12.5 185 201-412 51-261 (355)
195 3d8b_A Fidgetin-like protein 1 97.7 0.00021 7.1E-09 78.0 12.5 186 201-412 84-295 (357)
196 4gt6_A Cell surface protein; l 97.6 0.00073 2.5E-08 75.0 16.5 110 578-696 81-192 (394)
197 3pxg_A Negative regulator of g 97.6 0.00011 3.8E-09 83.2 9.7 145 201-378 180-338 (468)
198 2w58_A DNAI, primosome compone 97.6 5.8E-05 2E-09 75.1 6.1 119 208-347 36-158 (202)
199 3ec2_A DNA replication protein 97.6 4.7E-05 1.6E-09 74.2 5.2 121 206-347 19-142 (180)
200 3un9_A NLR family member X1; l 97.6 2.3E-05 8E-10 86.0 3.3 83 613-697 153-250 (372)
201 3rw6_A Nuclear RNA export fact 97.5 8.2E-05 2.8E-09 76.6 6.2 79 612-692 167-257 (267)
202 1qvr_A CLPB protein; coiled co 97.5 8.8E-05 3E-09 91.0 7.6 45 201-251 170-214 (854)
203 3b9p_A CG5977-PA, isoform A; A 97.5 0.00043 1.5E-08 73.5 12.1 184 201-412 21-233 (297)
204 3vfd_A Spastin; ATPase, microt 97.5 0.00052 1.8E-08 75.9 13.0 187 201-412 115-326 (389)
205 2zan_A Vacuolar protein sortin 97.5 0.0012 4.2E-08 74.1 16.1 188 201-412 134-345 (444)
206 2gno_A DNA polymerase III, gam 97.5 0.00028 9.6E-09 74.6 10.1 148 205-378 1-152 (305)
207 3rw6_A Nuclear RNA export fact 97.5 2.4E-05 8.3E-10 80.6 1.5 104 613-719 139-260 (267)
208 3cf0_A Transitional endoplasmi 97.5 0.0012 4.1E-08 70.0 14.7 180 201-406 15-222 (301)
209 1io0_A Tropomodulin; LRR prote 97.4 0.00013 4.4E-09 71.4 5.3 114 580-697 32-162 (185)
210 3hu3_A Transitional endoplasmi 97.4 0.00058 2E-08 77.2 11.3 185 201-411 204-414 (489)
211 3co5_A Putative two-component 97.4 5.1E-05 1.8E-09 70.7 2.1 46 202-251 5-50 (143)
212 4b4t_J 26S protease regulatory 97.4 0.0011 3.9E-08 71.6 12.6 180 200-405 147-354 (405)
213 4b4t_L 26S protease subunit RP 97.3 0.0016 5.6E-08 71.7 12.8 180 199-405 179-387 (437)
214 4b4t_K 26S protease regulatory 97.3 0.00084 2.9E-08 73.8 10.3 53 199-251 170-229 (428)
215 1io0_A Tropomodulin; LRR prote 97.2 0.00012 4.1E-09 71.5 3.1 90 608-698 29-135 (185)
216 1in4_A RUVB, holliday junction 97.2 0.0013 4.3E-08 71.0 11.4 176 201-410 25-221 (334)
217 4b4t_H 26S protease regulatory 97.2 0.0017 5.7E-08 71.3 12.3 179 201-405 209-415 (467)
218 3pxi_A Negative regulator of g 97.2 0.00096 3.3E-08 80.7 11.4 148 201-378 180-338 (758)
219 2bjv_A PSP operon transcriptio 97.2 0.00046 1.6E-08 71.9 7.4 47 201-251 6-52 (265)
220 4fcw_A Chaperone protein CLPB; 97.2 0.0011 3.9E-08 70.7 10.6 66 202-269 18-86 (311)
221 1r6b_X CLPA protein; AAA+, N-t 97.2 0.0021 7.1E-08 77.9 14.1 155 201-378 186-362 (758)
222 4h09_A Hypothetical leucine ri 97.2 0.018 6.3E-07 63.2 20.5 80 581-672 43-123 (379)
223 1ojl_A Transcriptional regulat 97.1 0.00062 2.1E-08 72.2 7.6 47 201-251 2-48 (304)
224 2r62_A Cell division protease 97.1 0.00028 9.4E-09 73.7 4.7 51 201-251 11-67 (268)
225 2c9o_A RUVB-like 1; hexameric 97.1 0.0011 3.8E-08 74.8 9.7 94 310-411 297-409 (456)
226 1ofh_A ATP-dependent HSL prote 97.0 0.0025 8.5E-08 68.0 11.4 51 201-251 15-73 (310)
227 1lv7_A FTSH; alpha/beta domain 97.0 0.0084 2.9E-07 61.8 15.1 183 201-409 12-222 (257)
228 4b4t_M 26S protease regulatory 97.0 0.0011 3.6E-08 73.1 8.3 178 200-404 180-386 (434)
229 2kjq_A DNAA-related protein; s 97.0 0.00021 7.3E-09 66.8 2.4 24 228-251 36-59 (149)
230 4h09_A Hypothetical leucine ri 97.0 0.039 1.3E-06 60.5 20.6 80 611-696 42-123 (379)
231 3pxi_A Negative regulator of g 96.9 0.0019 6.6E-08 78.1 10.0 155 201-377 491-674 (758)
232 4b4t_I 26S protease regulatory 96.9 0.0027 9.3E-08 68.9 9.6 178 200-404 181-387 (437)
233 2ce7_A Cell division protein F 96.8 0.0021 7.2E-08 72.0 8.6 179 201-405 16-221 (476)
234 2cvh_A DNA repair and recombin 96.8 0.0046 1.6E-07 62.0 10.4 86 227-318 19-115 (220)
235 3m6a_A ATP-dependent protease 96.8 0.0047 1.6E-07 71.1 11.3 50 201-250 81-130 (543)
236 2r44_A Uncharacterized protein 96.7 0.0017 5.7E-08 70.1 6.4 42 201-250 27-68 (331)
237 3cf2_A TER ATPase, transitiona 96.6 0.005 1.7E-07 73.1 10.4 179 201-405 204-407 (806)
238 2vhj_A Ntpase P4, P4; non- hyd 96.5 0.0011 3.9E-08 69.1 3.6 69 227-318 122-192 (331)
239 3hr8_A Protein RECA; alpha and 96.1 0.012 4E-07 63.2 8.3 85 227-318 60-149 (356)
240 1qvr_A CLPB protein; coiled co 96.0 0.01 3.5E-07 72.6 8.5 50 202-251 559-611 (854)
241 2x8a_A Nuclear valosin-contain 96.0 0.042 1.4E-06 57.0 11.9 155 201-378 10-191 (274)
242 2qgz_A Helicase loader, putati 95.9 0.0085 2.9E-07 63.5 6.5 43 206-251 133-175 (308)
243 1r6b_X CLPA protein; AAA+, N-t 95.9 0.0072 2.4E-07 73.2 6.7 51 201-251 458-511 (758)
244 3io5_A Recombination and repai 95.9 0.022 7.5E-07 59.2 9.0 82 230-318 30-121 (333)
245 1v5w_A DMC1, meiotic recombina 95.8 0.028 9.4E-07 60.5 9.9 90 227-317 121-228 (343)
246 2zr9_A Protein RECA, recombina 95.7 0.02 6.7E-07 61.7 8.4 85 227-318 60-149 (349)
247 1xp8_A RECA protein, recombina 95.7 0.021 7.2E-07 61.7 8.6 85 227-318 73-162 (366)
248 2dhr_A FTSH; AAA+ protein, hex 95.7 0.03 1E-06 63.1 10.0 176 200-405 30-236 (499)
249 1ypw_A Transitional endoplasmi 95.7 0.039 1.3E-06 66.6 11.6 158 200-378 203-385 (806)
250 2b8t_A Thymidine kinase; deoxy 95.6 0.0041 1.4E-07 62.0 2.4 114 227-348 11-126 (223)
251 1rz3_A Hypothetical protein rb 95.6 0.012 4.3E-07 57.9 5.7 43 205-250 2-44 (201)
252 1u94_A RECA protein, recombina 95.6 0.018 6E-07 62.1 7.1 84 227-317 62-150 (356)
253 1n0w_A DNA repair protein RAD5 95.5 0.024 8.1E-07 57.7 7.8 91 227-318 23-129 (243)
254 2z43_A DNA repair and recombin 95.5 0.03 1E-06 59.8 8.6 90 227-317 106-212 (324)
255 2i1q_A DNA repair and recombin 95.3 0.03 1E-06 59.8 7.9 90 227-317 97-213 (322)
256 3t15_A Ribulose bisphosphate c 95.2 0.024 8.1E-07 59.6 6.7 25 227-251 35-59 (293)
257 1odf_A YGR205W, hypothetical 3 95.2 0.078 2.7E-06 55.3 10.4 82 226-307 29-117 (290)
258 1jr3_D DNA polymerase III, del 94.9 0.17 5.8E-06 54.4 12.6 157 228-411 18-184 (343)
259 1g5t_A COB(I)alamin adenosyltr 94.8 0.012 4.2E-07 56.7 2.9 118 229-348 29-163 (196)
260 3c8u_A Fructokinase; YP_612366 94.8 0.02 6.7E-07 56.8 4.3 39 209-251 7-45 (208)
261 4a74_A DNA repair and recombin 94.5 0.097 3.3E-06 52.5 8.9 47 227-273 24-74 (231)
262 3ice_A Transcription terminati 94.5 0.044 1.5E-06 58.4 6.3 53 212-270 163-216 (422)
263 2px0_A Flagellar biosynthesis 94.5 0.072 2.5E-06 55.8 8.0 87 227-317 104-191 (296)
264 1pzn_A RAD51, DNA repair and r 94.3 0.079 2.7E-06 57.0 7.9 91 227-318 130-241 (349)
265 3rfe_A Platelet glycoprotein I 94.2 0.058 2E-06 48.6 5.7 51 619-672 12-65 (130)
266 3dm5_A SRP54, signal recogniti 94.2 0.39 1.3E-05 52.8 13.2 24 227-250 99-122 (443)
267 3nbx_X ATPase RAVA; AAA+ ATPas 94.2 0.033 1.1E-06 62.8 4.9 42 202-251 23-64 (500)
268 1zp6_A Hypothetical protein AT 94.1 0.028 9.6E-07 54.7 3.7 25 227-251 8-32 (191)
269 3kb2_A SPBC2 prophage-derived 94.1 0.023 8E-07 54.2 2.9 22 229-250 2-23 (173)
270 3lw7_A Adenylate kinase relate 94.0 0.025 8.4E-07 54.2 3.0 20 229-248 2-21 (179)
271 3tqc_A Pantothenate kinase; bi 94.0 0.049 1.7E-06 57.4 5.5 46 203-250 69-114 (321)
272 3hws_A ATP-dependent CLP prote 94.0 0.035 1.2E-06 60.4 4.5 50 202-251 16-74 (363)
273 1gvn_B Zeta; postsegregational 94.0 0.053 1.8E-06 56.6 5.6 41 209-250 15-55 (287)
274 1qhx_A CPT, protein (chloramph 93.9 0.026 8.8E-07 54.3 2.9 22 229-250 4-25 (178)
275 2ga8_A Hypothetical 39.9 kDa p 93.8 0.061 2.1E-06 57.0 5.7 45 204-250 2-46 (359)
276 3vaa_A Shikimate kinase, SK; s 93.8 0.029 1E-06 55.1 3.1 23 228-250 25-47 (199)
277 3bh0_A DNAB-like replicative h 93.7 0.2 6.7E-06 53.1 9.6 52 227-282 67-118 (315)
278 3lda_A DNA repair protein RAD5 93.7 0.12 4.3E-06 56.3 8.1 57 227-284 177-237 (400)
279 3uie_A Adenylyl-sulfate kinase 93.7 0.038 1.3E-06 54.3 3.7 25 227-251 24-48 (200)
280 1ly1_A Polynucleotide kinase; 93.7 0.036 1.2E-06 53.3 3.4 22 229-250 3-24 (181)
281 1kgd_A CASK, peripheral plasma 93.7 0.031 1.1E-06 53.9 2.9 23 228-250 5-27 (180)
282 2p5t_B PEZT; postsegregational 93.6 0.059 2E-06 55.2 5.1 43 207-250 12-54 (253)
283 2w0m_A SSO2452; RECA, SSPF, un 93.5 0.13 4.5E-06 51.6 7.6 24 228-251 23-46 (235)
284 1kag_A SKI, shikimate kinase I 93.4 0.031 1.1E-06 53.4 2.5 22 229-250 5-26 (173)
285 1knq_A Gluconate kinase; ALFA/ 93.4 0.05 1.7E-06 52.0 4.0 24 227-250 7-30 (175)
286 1ixz_A ATP-dependent metallopr 93.4 0.074 2.5E-06 54.5 5.5 50 201-251 16-72 (254)
287 4gp7_A Metallophosphoesterase; 93.2 0.046 1.6E-06 52.1 3.4 24 227-250 8-31 (171)
288 3trf_A Shikimate kinase, SK; a 93.2 0.041 1.4E-06 53.2 3.0 23 228-250 5-27 (185)
289 4eun_A Thermoresistant glucoki 93.2 0.042 1.4E-06 54.0 3.1 24 227-250 28-51 (200)
290 2rhm_A Putative kinase; P-loop 93.1 0.052 1.8E-06 52.8 3.7 24 227-250 4-27 (193)
291 3tau_A Guanylate kinase, GMP k 93.1 0.046 1.6E-06 54.0 3.3 25 227-251 7-31 (208)
292 3tr0_A Guanylate kinase, GMP k 93.1 0.047 1.6E-06 53.8 3.3 23 228-250 7-29 (205)
293 1nks_A Adenylate kinase; therm 93.1 0.044 1.5E-06 53.3 3.0 23 229-251 2-24 (194)
294 3asz_A Uridine kinase; cytidin 93.1 0.052 1.8E-06 53.8 3.6 24 227-250 5-28 (211)
295 2bdt_A BH3686; alpha-beta prot 93.0 0.051 1.7E-06 52.8 3.4 22 229-250 3-24 (189)
296 2qt1_A Nicotinamide riboside k 93.0 0.057 2E-06 53.3 3.8 25 227-251 20-44 (207)
297 3t61_A Gluconokinase; PSI-biol 93.0 0.041 1.4E-06 54.1 2.7 23 228-250 18-40 (202)
298 1vma_A Cell division protein F 93.0 0.19 6.5E-06 52.7 7.9 88 227-317 103-195 (306)
299 1ye8_A Protein THEP1, hypothet 92.9 0.052 1.8E-06 52.0 3.1 22 230-251 2-23 (178)
300 1sky_E F1-ATPase, F1-ATP synth 92.9 0.22 7.4E-06 55.0 8.4 51 229-280 152-203 (473)
301 3a00_A Guanylate kinase, GMP k 92.9 0.04 1.4E-06 53.4 2.4 22 229-250 2-23 (186)
302 1ukz_A Uridylate kinase; trans 92.8 0.067 2.3E-06 52.6 4.0 25 226-250 13-37 (203)
303 1zuh_A Shikimate kinase; alpha 92.8 0.05 1.7E-06 51.6 2.9 24 227-250 6-29 (168)
304 1uf9_A TT1252 protein; P-loop, 92.8 0.061 2.1E-06 52.8 3.7 25 226-250 6-30 (203)
305 1um8_A ATP-dependent CLP prote 92.8 0.066 2.2E-06 58.6 4.2 49 202-250 22-94 (376)
306 3iij_A Coilin-interacting nucl 92.7 0.047 1.6E-06 52.5 2.6 23 228-250 11-33 (180)
307 2j41_A Guanylate kinase; GMP, 92.7 0.058 2E-06 53.2 3.3 24 228-251 6-29 (207)
308 1xjc_A MOBB protein homolog; s 92.7 0.057 2E-06 50.9 3.0 25 227-251 3-27 (169)
309 1iy2_A ATP-dependent metallopr 92.7 0.097 3.3E-06 54.4 5.2 51 200-251 39-96 (278)
310 1g8p_A Magnesium-chelatase 38 92.7 0.041 1.4E-06 59.5 2.4 45 201-251 24-68 (350)
311 1uj2_A Uridine-cytidine kinase 92.6 0.063 2.2E-06 54.9 3.6 25 226-250 20-44 (252)
312 3umf_A Adenylate kinase; rossm 92.6 0.061 2.1E-06 53.2 3.3 26 226-251 27-52 (217)
313 1jjv_A Dephospho-COA kinase; P 92.6 0.064 2.2E-06 52.9 3.5 22 229-250 3-24 (206)
314 1y63_A LMAJ004144AAA protein; 92.6 0.062 2.1E-06 51.9 3.3 24 227-250 9-32 (184)
315 4a1f_A DNAB helicase, replicat 92.6 0.31 1.1E-05 51.7 8.9 53 227-283 45-97 (338)
316 2ze6_A Isopentenyl transferase 92.6 0.061 2.1E-06 55.0 3.4 22 229-250 2-23 (253)
317 2qor_A Guanylate kinase; phosp 92.5 0.052 1.8E-06 53.5 2.7 24 227-250 11-34 (204)
318 1kht_A Adenylate kinase; phosp 92.5 0.061 2.1E-06 52.2 3.1 22 229-250 4-25 (192)
319 2xxa_A Signal recognition part 92.4 0.53 1.8E-05 52.0 10.9 43 209-251 78-123 (433)
320 2ck3_D ATP synthase subunit be 92.4 0.39 1.3E-05 52.9 9.5 65 212-282 142-207 (482)
321 1tev_A UMP-CMP kinase; ploop, 92.4 0.07 2.4E-06 52.0 3.4 23 228-250 3-25 (196)
322 1lvg_A Guanylate kinase, GMP k 92.4 0.05 1.7E-06 53.3 2.4 22 229-250 5-26 (198)
323 3a4m_A L-seryl-tRNA(SEC) kinas 92.4 0.071 2.4E-06 54.8 3.6 24 227-250 3-26 (260)
324 2if2_A Dephospho-COA kinase; a 92.4 0.063 2.2E-06 52.8 3.1 22 229-250 2-23 (204)
325 2c95_A Adenylate kinase 1; tra 92.4 0.066 2.3E-06 52.2 3.2 24 227-250 8-31 (196)
326 3aez_A Pantothenate kinase; tr 92.3 0.074 2.5E-06 56.1 3.7 25 226-250 88-112 (312)
327 1cke_A CK, MSSA, protein (cyti 92.3 0.064 2.2E-06 53.8 3.1 22 229-250 6-27 (227)
328 2bbw_A Adenylate kinase 4, AK4 92.3 0.065 2.2E-06 54.6 3.2 23 228-250 27-49 (246)
329 2yvu_A Probable adenylyl-sulfa 92.3 0.089 3E-06 50.9 4.0 25 227-251 12-36 (186)
330 2jaq_A Deoxyguanosine kinase; 92.3 0.059 2E-06 53.0 2.7 21 230-250 2-22 (205)
331 2jeo_A Uridine-cytidine kinase 92.3 0.08 2.7E-06 53.9 3.8 24 227-250 24-47 (245)
332 1pgv_A TMD-1, tropomodulin TMD 92.2 0.18 6E-06 48.8 5.9 86 610-696 36-136 (197)
333 3kl4_A SRP54, signal recogniti 92.2 0.39 1.3E-05 52.8 9.4 25 227-251 96-120 (433)
334 1htw_A HI0065; nucleotide-bind 92.2 0.09 3.1E-06 49.2 3.7 24 227-250 32-55 (158)
335 3ney_A 55 kDa erythrocyte memb 92.2 0.073 2.5E-06 51.6 3.1 24 227-250 18-41 (197)
336 3tlx_A Adenylate kinase 2; str 92.1 0.1 3.5E-06 52.9 4.4 24 227-250 28-51 (243)
337 1via_A Shikimate kinase; struc 92.1 0.068 2.3E-06 51.1 2.9 22 229-250 5-26 (175)
338 3cm0_A Adenylate kinase; ATP-b 92.1 0.082 2.8E-06 51.1 3.4 23 228-250 4-26 (186)
339 2iyv_A Shikimate kinase, SK; t 92.1 0.055 1.9E-06 52.3 2.1 22 229-250 3-24 (184)
340 1znw_A Guanylate kinase, GMP k 92.0 0.076 2.6E-06 52.4 3.2 24 227-250 19-42 (207)
341 2plr_A DTMP kinase, probable t 91.9 0.09 3.1E-06 52.0 3.6 23 229-251 5-27 (213)
342 1sq5_A Pantothenate kinase; P- 91.9 0.17 5.8E-06 53.4 5.9 25 226-250 78-102 (308)
343 1qf9_A UMP/CMP kinase, protein 91.9 0.1 3.6E-06 50.6 4.0 23 228-250 6-28 (194)
344 2ffh_A Protein (FFH); SRP54, s 91.9 0.3 1E-05 53.5 8.0 24 228-251 98-121 (425)
345 2cdn_A Adenylate kinase; phosp 91.9 0.091 3.1E-06 51.5 3.6 24 227-250 19-42 (201)
346 1ex7_A Guanylate kinase; subst 91.8 0.066 2.3E-06 51.5 2.4 22 229-250 2-23 (186)
347 3e70_C DPA, signal recognition 91.8 0.55 1.9E-05 49.7 9.7 25 227-251 128-152 (328)
348 1rj9_A FTSY, signal recognitio 91.8 0.091 3.1E-06 55.2 3.6 24 227-250 101-124 (304)
349 1e6c_A Shikimate kinase; phosp 91.8 0.066 2.3E-06 51.0 2.4 22 229-250 3-24 (173)
350 2bwj_A Adenylate kinase 5; pho 91.7 0.08 2.7E-06 51.8 3.0 22 229-250 13-34 (199)
351 1z6g_A Guanylate kinase; struc 91.7 0.071 2.4E-06 53.1 2.6 23 228-250 23-45 (218)
352 2grj_A Dephospho-COA kinase; T 91.7 0.086 3E-06 51.2 3.0 25 226-250 10-34 (192)
353 2vli_A Antibiotic resistance p 91.7 0.06 2E-06 51.9 1.9 23 228-250 5-27 (183)
354 1g41_A Heat shock protein HSLU 91.6 0.13 4.5E-06 56.6 4.8 50 201-250 15-72 (444)
355 2pt5_A Shikimate kinase, SK; a 91.6 0.081 2.8E-06 50.1 2.7 21 230-250 2-22 (168)
356 3rfe_A Platelet glycoprotein I 91.6 0.21 7.2E-06 44.9 5.3 54 642-698 11-67 (130)
357 4e22_A Cytidylate kinase; P-lo 91.6 0.091 3.1E-06 53.7 3.3 23 228-250 27-49 (252)
358 1s96_A Guanylate kinase, GMP k 91.6 0.09 3.1E-06 52.3 3.1 24 227-250 15-38 (219)
359 2pez_A Bifunctional 3'-phospho 91.6 0.11 3.7E-06 49.9 3.6 24 227-250 4-27 (179)
360 3l0o_A Transcription terminati 91.6 0.096 3.3E-06 55.7 3.4 52 212-269 164-216 (427)
361 2f6r_A COA synthase, bifunctio 91.5 0.11 3.6E-06 54.1 3.8 24 226-249 73-96 (281)
362 3cmu_A Protein RECA, recombina 91.5 0.23 8E-06 64.5 7.5 84 227-317 1426-1514(2050)
363 2f1r_A Molybdopterin-guanine d 91.5 0.068 2.3E-06 50.7 2.0 23 229-251 3-25 (171)
364 2pbr_A DTMP kinase, thymidylat 91.5 0.084 2.9E-06 51.3 2.8 21 230-250 2-22 (195)
365 1fx0_B ATP synthase beta chain 91.4 0.42 1.4E-05 52.8 8.4 64 213-282 155-219 (498)
366 2hf9_A Probable hydrogenase ni 91.4 0.18 6.2E-06 50.3 5.3 25 227-251 37-61 (226)
367 1tue_A Replication protein E1; 91.4 0.13 4.4E-06 49.8 3.8 37 210-251 45-81 (212)
368 1aky_A Adenylate kinase; ATP:A 91.4 0.097 3.3E-06 52.2 3.2 23 228-250 4-26 (220)
369 1nn5_A Similar to deoxythymidy 91.3 0.1 3.6E-06 51.6 3.3 24 228-251 9-32 (215)
370 2wwf_A Thymidilate kinase, put 91.2 0.1 3.5E-06 51.6 3.1 24 228-251 10-33 (212)
371 3fwy_A Light-independent proto 91.2 0.12 3.9E-06 54.7 3.6 25 226-250 46-70 (314)
372 2qe7_A ATP synthase subunit al 91.1 0.27 9.2E-06 54.4 6.5 94 213-317 152-263 (502)
373 1zd8_A GTP:AMP phosphotransfer 91.1 0.1 3.4E-06 52.4 3.0 24 227-250 6-29 (227)
374 1ls1_A Signal recognition part 91.0 0.51 1.7E-05 49.2 8.4 24 228-251 98-121 (295)
375 2z0h_A DTMP kinase, thymidylat 91.0 0.1 3.4E-06 50.9 2.8 22 230-251 2-23 (197)
376 2i3b_A HCR-ntpase, human cance 90.9 0.099 3.4E-06 50.6 2.6 22 230-251 3-24 (189)
377 2v54_A DTMP kinase, thymidylat 90.8 0.11 3.7E-06 51.1 2.8 23 229-251 5-27 (204)
378 3fb4_A Adenylate kinase; psych 90.8 0.12 4.1E-06 51.3 3.2 21 230-250 2-22 (216)
379 1m7g_A Adenylylsulfate kinase; 90.8 0.14 4.8E-06 50.6 3.7 25 227-251 24-48 (211)
380 1gtv_A TMK, thymidylate kinase 90.8 0.07 2.4E-06 52.9 1.4 22 230-251 2-23 (214)
381 3tif_A Uncharacterized ABC tra 90.7 0.12 4.1E-06 52.1 3.1 23 228-250 31-53 (235)
382 1zak_A Adenylate kinase; ATP:A 90.7 0.1 3.6E-06 52.0 2.7 24 227-250 4-27 (222)
383 2onk_A Molybdate/tungstate ABC 90.7 0.12 4E-06 52.2 3.0 22 229-250 25-46 (240)
384 1vht_A Dephospho-COA kinase; s 90.7 0.15 5E-06 50.8 3.7 23 228-250 4-26 (218)
385 3p32_A Probable GTPase RV1496/ 90.6 0.23 8E-06 53.5 5.5 37 210-250 65-101 (355)
386 2wsm_A Hydrogenase expression/ 90.6 0.17 5.7E-06 50.4 4.1 41 205-251 13-53 (221)
387 3b9q_A Chloroplast SRP recepto 90.6 0.14 4.8E-06 53.7 3.6 25 227-251 99-123 (302)
388 2pcj_A ABC transporter, lipopr 90.6 0.12 4.2E-06 51.6 3.0 22 229-250 31-52 (224)
389 3dl0_A Adenylate kinase; phosp 90.5 0.13 4.4E-06 51.1 3.2 21 230-250 2-22 (216)
390 2ehv_A Hypothetical protein PH 90.5 0.12 4.3E-06 52.5 3.1 24 227-250 29-52 (251)
391 3lnc_A Guanylate kinase, GMP k 90.5 0.086 2.9E-06 53.1 1.8 23 228-250 27-50 (231)
392 1j8m_F SRP54, signal recogniti 90.5 0.75 2.6E-05 47.9 9.1 24 228-251 98-121 (297)
393 2j37_W Signal recognition part 90.5 1.3 4.5E-05 49.7 11.5 41 210-250 80-123 (504)
394 2r6a_A DNAB helicase, replicat 90.5 0.56 1.9E-05 52.5 8.6 51 227-280 202-252 (454)
395 1np6_A Molybdopterin-guanine d 90.4 0.14 4.7E-06 48.8 3.0 25 227-251 5-29 (174)
396 2ged_A SR-beta, signal recogni 90.4 0.2 6.9E-06 48.5 4.3 25 227-251 47-71 (193)
397 3nwj_A ATSK2; P loop, shikimat 90.3 0.11 3.7E-06 52.8 2.3 22 229-250 49-70 (250)
398 2r9v_A ATP synthase subunit al 90.1 0.44 1.5E-05 52.7 7.1 94 213-317 165-276 (515)
399 3gfo_A Cobalt import ATP-bindi 90.1 0.14 4.9E-06 52.7 3.1 23 228-250 34-56 (275)
400 1q57_A DNA primase/helicase; d 90.1 0.73 2.5E-05 52.3 9.4 54 227-283 241-294 (503)
401 2cbz_A Multidrug resistance-as 90.0 0.16 5.3E-06 51.3 3.3 24 228-251 31-54 (237)
402 3d3q_A TRNA delta(2)-isopenten 90.0 0.16 5.4E-06 53.7 3.4 22 229-250 8-29 (340)
403 3r20_A Cytidylate kinase; stru 90.0 0.15 5.3E-06 50.9 3.1 23 228-250 9-31 (233)
404 3be4_A Adenylate kinase; malar 90.0 0.13 4.4E-06 51.2 2.5 22 229-250 6-27 (217)
405 1b0u_A Histidine permease; ABC 90.0 0.15 5.1E-06 52.3 3.1 23 228-250 32-54 (262)
406 3ake_A Cytidylate kinase; CMP 90.0 0.16 5.3E-06 50.0 3.2 21 230-250 4-24 (208)
407 4akg_A Glutathione S-transfera 89.9 1.2 4E-05 60.3 12.1 78 229-317 1268-1345(2695)
408 3k1j_A LON protease, ATP-depen 89.9 0.22 7.4E-06 58.1 4.8 43 201-251 41-83 (604)
409 3b85_A Phosphate starvation-in 89.9 0.12 4E-06 51.0 2.1 23 229-251 23-45 (208)
410 3hjn_A DTMP kinase, thymidylat 89.8 0.41 1.4E-05 46.6 6.0 22 230-251 2-23 (197)
411 1mv5_A LMRA, multidrug resista 89.8 0.19 6.6E-06 50.9 3.7 24 227-250 27-50 (243)
412 4g1u_C Hemin import ATP-bindin 89.8 0.16 5.4E-06 52.2 3.1 23 228-250 37-59 (266)
413 1ji0_A ABC transporter; ATP bi 89.8 0.16 5.6E-06 51.3 3.1 23 228-250 32-54 (240)
414 1sgw_A Putative ABC transporte 89.7 0.14 4.7E-06 50.6 2.5 22 229-250 36-57 (214)
415 3a8t_A Adenylate isopentenyltr 89.7 0.2 6.9E-06 52.7 3.9 25 227-251 39-63 (339)
416 2olj_A Amino acid ABC transpor 89.7 0.17 5.9E-06 51.8 3.3 23 228-250 50-72 (263)
417 3sr0_A Adenylate kinase; phosp 89.7 0.17 5.9E-06 49.6 3.2 22 230-251 2-23 (206)
418 1g6h_A High-affinity branched- 89.7 0.16 5.6E-06 51.8 3.1 23 228-250 33-55 (257)
419 2og2_A Putative signal recogni 89.6 0.19 6.5E-06 53.9 3.6 25 227-251 156-180 (359)
420 2pze_A Cystic fibrosis transme 89.5 0.17 5.9E-06 50.6 3.1 24 228-251 34-57 (229)
421 2ff7_A Alpha-hemolysin translo 89.5 0.17 5.9E-06 51.3 3.1 22 229-250 36-57 (247)
422 2d2e_A SUFC protein; ABC-ATPas 89.5 0.18 6E-06 51.4 3.2 22 229-250 30-51 (250)
423 2zej_A Dardarin, leucine-rich 89.5 0.17 5.9E-06 48.6 3.0 22 230-251 4-25 (184)
424 1vpl_A ABC transporter, ATP-bi 89.4 0.18 6E-06 51.5 3.1 23 228-250 41-63 (256)
425 1yrb_A ATP(GTP)binding protein 89.4 0.24 8.2E-06 50.8 4.2 25 226-250 12-36 (262)
426 3cf2_A TER ATPase, transitiona 89.3 0.64 2.2E-05 55.2 8.1 52 200-251 476-534 (806)
427 2wji_A Ferrous iron transport 89.2 0.23 7.8E-06 46.7 3.6 23 229-251 4-26 (165)
428 2zu0_C Probable ATP-dependent 89.2 0.19 6.3E-06 51.8 3.1 23 228-250 46-68 (267)
429 2xb4_A Adenylate kinase; ATP-b 89.2 0.19 6.4E-06 50.2 3.1 21 230-250 2-22 (223)
430 3exa_A TRNA delta(2)-isopenten 89.2 0.22 7.4E-06 51.8 3.6 23 228-250 3-25 (322)
431 2qi9_C Vitamin B12 import ATP- 89.2 0.19 6.5E-06 51.0 3.1 22 229-250 27-48 (249)
432 1ak2_A Adenylate kinase isoenz 89.2 0.2 6.8E-06 50.4 3.3 25 227-251 15-39 (233)
433 1cr0_A DNA primase/helicase; R 89.2 0.48 1.6E-05 49.6 6.4 52 227-282 34-86 (296)
434 1e4v_A Adenylate kinase; trans 89.1 0.19 6.5E-06 49.8 3.1 21 230-250 2-22 (214)
435 1a7j_A Phosphoribulokinase; tr 89.1 0.094 3.2E-06 54.7 0.8 24 227-250 4-27 (290)
436 1oix_A RAS-related protein RAB 89.1 0.19 6.6E-06 48.6 3.1 24 228-251 29-52 (191)
437 2ghi_A Transport protein; mult 89.1 0.2 6.9E-06 51.3 3.3 24 228-251 46-69 (260)
438 3cmu_A Protein RECA, recombina 89.1 0.53 1.8E-05 61.3 7.7 86 227-319 382-472 (2050)
439 3crm_A TRNA delta(2)-isopenten 89.0 0.21 7E-06 52.5 3.3 22 229-250 6-27 (323)
440 2ixe_A Antigen peptide transpo 89.0 0.2 7E-06 51.6 3.3 23 228-250 45-67 (271)
441 2nq2_C Hypothetical ABC transp 89.0 0.2 6.7E-06 51.1 3.1 22 229-250 32-53 (253)
442 2yz2_A Putative ABC transporte 88.9 0.2 6.8E-06 51.5 3.1 23 228-250 33-55 (266)
443 2ihy_A ABC transporter, ATP-bi 88.9 0.2 6.9E-06 51.8 3.1 23 228-250 47-69 (279)
444 3bgw_A DNAB-like replicative h 88.8 1.4 4.9E-05 48.8 10.1 52 227-282 196-247 (444)
445 2v9p_A Replication protein E1; 88.8 0.21 7.1E-06 52.2 3.1 24 227-250 125-148 (305)
446 1zu4_A FTSY; GTPase, signal re 88.7 0.24 8.3E-06 52.3 3.7 25 227-251 104-128 (320)
447 2eyu_A Twitching motility prot 88.7 0.25 8.6E-06 50.5 3.7 24 227-250 24-47 (261)
448 3zvl_A Bifunctional polynucleo 88.7 0.21 7.3E-06 55.1 3.4 26 226-251 256-281 (416)
449 2dyk_A GTP-binding protein; GT 88.6 0.23 8E-06 46.2 3.2 23 229-251 2-24 (161)
450 2vp4_A Deoxynucleoside kinase; 88.6 0.21 7.3E-06 50.1 3.0 25 226-250 18-42 (230)
451 4eaq_A DTMP kinase, thymidylat 88.5 0.39 1.3E-05 48.0 4.9 25 227-251 25-49 (229)
452 3e1s_A Exodeoxyribonuclease V, 88.5 0.6 2E-05 53.8 7.1 104 229-346 205-314 (574)
453 3vr4_D V-type sodium ATPase su 88.5 0.38 1.3E-05 52.5 5.1 86 229-317 152-257 (465)
454 2yhs_A FTSY, cell division pro 88.5 0.25 8.7E-06 54.8 3.7 43 226-271 291-333 (503)
455 2f9l_A RAB11B, member RAS onco 88.5 0.22 7.4E-06 48.6 2.9 24 228-251 5-28 (199)
456 1ltq_A Polynucleotide kinase; 88.4 0.23 8E-06 52.2 3.4 22 229-250 3-24 (301)
457 3cmw_A Protein RECA, recombina 88.4 0.5 1.7E-05 60.6 6.8 82 229-317 384-470 (1706)
458 3foz_A TRNA delta(2)-isopenten 88.4 0.29 1E-05 50.7 3.9 24 227-250 9-32 (316)
459 3mfy_A V-type ATP synthase alp 88.3 1 3.5E-05 50.2 8.4 58 212-278 216-274 (588)
460 2dr3_A UPF0273 protein PH0284; 88.1 0.32 1.1E-05 49.2 4.1 40 227-268 22-61 (247)
461 1pgv_A TMD-1, tropomodulin TMD 88.1 0.4 1.4E-05 46.3 4.4 114 581-697 38-168 (197)
462 2ck3_A ATP synthase subunit al 88.1 0.64 2.2E-05 51.5 6.6 98 213-317 152-271 (510)
463 2v3c_C SRP54, signal recogniti 88.1 0.27 9.4E-06 54.2 3.7 25 227-251 98-122 (432)
464 2qmh_A HPR kinase/phosphorylas 88.0 0.26 9.1E-06 47.3 3.0 24 228-251 34-57 (205)
465 3nh6_A ATP-binding cassette SU 88.0 0.24 8.3E-06 51.8 3.0 24 227-250 79-102 (306)
466 1svm_A Large T antigen; AAA+ f 88.0 0.44 1.5E-05 51.5 5.1 24 227-250 168-191 (377)
467 3gqb_B V-type ATP synthase bet 88.0 0.26 9E-06 53.8 3.3 89 229-317 148-260 (464)
468 2pjz_A Hypothetical protein ST 87.9 0.26 8.7E-06 50.5 3.1 22 229-250 31-52 (263)
469 3sop_A Neuronal-specific septi 87.9 0.25 8.6E-06 50.8 3.1 21 230-250 4-24 (270)
470 2q6t_A DNAB replication FORK h 87.8 1.2 4.2E-05 49.5 8.9 54 227-283 199-252 (444)
471 1q3t_A Cytidylate kinase; nucl 87.8 0.28 9.5E-06 49.4 3.3 25 226-250 14-38 (236)
472 2wjg_A FEOB, ferrous iron tran 87.8 0.32 1.1E-05 46.7 3.6 25 227-251 6-30 (188)
473 2lkc_A Translation initiation 87.7 0.36 1.2E-05 45.7 4.0 26 226-251 6-31 (178)
474 1nlf_A Regulatory protein REPA 87.6 0.27 9.2E-06 51.0 3.1 23 228-250 30-52 (279)
475 1fx0_A ATP synthase alpha chai 87.5 0.51 1.8E-05 52.2 5.3 84 228-317 163-264 (507)
476 2nzj_A GTP-binding protein REM 87.4 0.29 1E-05 46.2 3.1 24 228-251 4-27 (175)
477 3vr4_A V-type sodium ATPase ca 87.4 1.3 4.5E-05 49.6 8.5 50 212-270 221-270 (600)
478 3end_A Light-independent proto 87.3 0.55 1.9E-05 49.4 5.4 42 226-269 39-80 (307)
479 2r8r_A Sensor protein; KDPD, P 87.2 0.61 2.1E-05 45.9 5.2 41 229-271 7-47 (228)
480 2bbs_A Cystic fibrosis transme 87.1 0.31 1.1E-05 50.6 3.2 24 228-251 64-87 (290)
481 2yv5_A YJEQ protein; hydrolase 87.1 0.41 1.4E-05 50.2 4.2 31 210-249 156-186 (302)
482 3q72_A GTP-binding protein RAD 87.0 0.31 1E-05 45.6 2.9 22 230-251 4-25 (166)
483 2gj8_A MNME, tRNA modification 87.0 0.31 1.1E-05 46.2 3.0 23 229-251 5-27 (172)
484 2ce2_X GTPase HRAS; signaling 87.0 0.3 1E-05 45.5 2.9 22 230-251 5-26 (166)
485 1nij_A Hypothetical protein YJ 86.9 0.28 9.5E-06 52.0 2.8 24 227-250 3-26 (318)
486 2ocp_A DGK, deoxyguanosine kin 86.9 0.32 1.1E-05 49.1 3.2 24 228-251 2-25 (241)
487 3kta_A Chromosome segregation 86.9 0.33 1.1E-05 46.5 3.1 22 229-250 27-48 (182)
488 4edh_A DTMP kinase, thymidylat 86.9 0.93 3.2E-05 44.6 6.4 24 228-251 6-29 (213)
489 1fzq_A ADP-ribosylation factor 86.8 0.42 1.4E-05 45.7 3.8 25 227-251 15-39 (181)
490 1u0j_A DNA replication protein 86.8 0.53 1.8E-05 47.7 4.6 37 211-251 91-127 (267)
491 1svi_A GTP-binding protein YSX 86.7 0.4 1.4E-05 46.4 3.7 25 227-251 22-46 (195)
492 3fvq_A Fe(3+) IONS import ATP- 86.6 0.33 1.1E-05 51.9 3.1 23 228-250 30-52 (359)
493 3f9v_A Minichromosome maintena 86.6 0.23 7.9E-06 57.5 2.1 50 202-251 296-350 (595)
494 3q85_A GTP-binding protein REM 86.6 0.35 1.2E-05 45.4 3.0 22 229-250 3-24 (169)
495 3tui_C Methionine import ATP-b 86.5 0.34 1.2E-05 51.8 3.1 23 228-250 54-76 (366)
496 2erx_A GTP-binding protein DI- 86.5 0.35 1.2E-05 45.5 3.0 23 229-251 4-26 (172)
497 1tq4_A IIGP1, interferon-induc 86.4 0.36 1.2E-05 52.8 3.3 24 227-250 68-91 (413)
498 1p5z_B DCK, deoxycytidine kina 86.3 0.26 8.9E-06 50.6 2.1 24 227-250 23-46 (263)
499 3con_A GTPase NRAS; structural 86.3 0.35 1.2E-05 46.6 2.9 23 229-251 22-44 (190)
500 1z2a_A RAS-related protein RAB 86.1 0.44 1.5E-05 44.6 3.5 24 228-251 5-28 (168)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=2.2e-48 Score=455.63 Aligned_cols=317 Identities=17% Similarity=0.233 Sum_probs=259.2
Q ss_pred ccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhC--ccchhcccceEEEEEeCCCC--CHHHHHHHH
Q 038637 204 YGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYN--DDRVQRHFQFKAWACVSEDF--DVFRVTKSI 279 (962)
Q Consensus 204 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~--~~~~~~~F~~~~wv~v~~~~--~~~~~~~~i 279 (962)
|||+.++++|.++|.... +...++|+|+||||+||||||+++|+ +.+++.+|+.++||++++.+ +...++..|
T Consensus 131 ~GR~~~~~~l~~~L~~~~---~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC---DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT---TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc---CCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHHHH
Confidence 599999999999997542 24689999999999999999999998 67889999999999999985 899999999
Q ss_pred HHHhccCCC------CCCccHHHHHHHHHhHhCCc-eEEEEEecCCCCCccchhhccCCCCCCCCCcEEEEEecChhhHh
Q 038637 280 LKSIANDQS------NNDDDLNLLQEKLKKQLSGN-KFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVVTTRNLDVAN 352 (962)
Q Consensus 280 l~~l~~~~~------~~~~~~~~~~~~l~~~l~~k-r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~ 352 (962)
+.+++.... ....+.+.++..+++.|+++ ||||||||||+.+...|... +||+||||||+..++.
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~~--------~gs~ilvTTR~~~v~~ 279 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQE--------LRLRCLVTTRDVEISN 279 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHHH--------TTCEEEEEESBGGGGG
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhccccc--------CCCEEEEEcCCHHHHH
Confidence 999986521 02334577889999999996 99999999998543234322 7999999999999998
Q ss_pred hhC-CCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHHHHHHhhhcCCCChhHHHHHHhhh
Q 038637 353 LTR-AYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAAKTLGGLLRGKDDLTDWEFVLNTD 431 (962)
Q Consensus 353 ~~~-~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~~L~~~~~~~~w~~~~~~~ 431 (962)
.++ ...+|++++|++++||+||.+++|+.. .++.+++++++|+++|+|+||||+++|+.|+.+ . .+|...+.+.
T Consensus 280 ~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~---~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~-w~~~~~l~~~ 354 (549)
T 2a5y_B 280 AASQTCEFIEVTSLEIDECYDFLEAYGMPMP---VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T-FEKMAQLNNK 354 (549)
T ss_dssp GCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S-HHHHHHHHHH
T ss_pred HcCCCCeEEECCCCCHHHHHHHHHHHhcCCC---CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-h-HHHHHHhHHH
Confidence 876 335799999999999999999987642 246788999999999999999999999999776 2 2333334333
Q ss_pred hhcccccccCchhHHHhhccCCchhhHhHHh-----------hhcCCCCCceeCHHHHHHHHHHc--CCcccccCCCcHH
Q 038637 432 IWKLQEENYGIIPALRVSYHFLPSQLKQCFA-----------YCSLFPKDYEFQEEEIILLWTAE--GFLDQEYNGRKME 498 (962)
Q Consensus 432 ~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl-----------~~~~fp~~~~i~~~~li~~W~ae--g~i~~~~~~~~~e 498 (962)
.+.. ....+.+++.+||+.||+++|.||+ |||+||+++.|+ +.+|+|+ ||+.....+.+.+
T Consensus 355 l~~~--~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~ 428 (549)
T 2a5y_B 355 LESR--GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDD 428 (549)
T ss_dssp HHHH--CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTH
T ss_pred hhcc--cHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHH
Confidence 3322 2356999999999999999999999 999999999999 8999999 9998755466788
Q ss_pred HHHHHHHHHHhhCCCcccccCC-CCcEEEcchhhHHHHHhhcccee
Q 038637 499 DLGREFVRELHSRSLFQQSSRD-ASRFVMHDLINDLARWAAGEIYF 543 (962)
Q Consensus 499 ~~~~~~l~~L~~r~ll~~~~~~-~~~~~mHdli~d~a~~~~~~~~~ 543 (962)
+.++ ||++|++|||+++...+ ..+|+|||+||+||++++.++++
T Consensus 429 ~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 429 EVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp HHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 8888 99999999999987543 56899999999999999987765
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=3.3e-39 Score=378.43 Aligned_cols=286 Identities=20% Similarity=0.244 Sum_probs=231.3
Q ss_pred cccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccce-EEEEEeCCCCCHHHHHHHHHH
Q 038637 203 VYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQF-KAWACVSEDFDVFRVTKSILK 281 (962)
Q Consensus 203 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~-~~wv~v~~~~~~~~~~~~il~ 281 (962)
.|||+.++++|.++|.... ..++|+|+||||+||||||+++|++.+++.+|+. ++|+++++.++...++..+++
T Consensus 130 ~VGRe~eLeeL~elL~~~d-----~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~ 204 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELR-----PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCC-----SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccC-----CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 4899999999999997532 4689999999999999999999998788999997 899999999999888888877
Q ss_pred HhccCC---CC-------CCccHHHHHHHHHhHh---CCceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEEEecCh
Q 038637 282 SIANDQ---SN-------NDDDLNLLQEKLKKQL---SGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVVTTRNL 348 (962)
Q Consensus 282 ~l~~~~---~~-------~~~~~~~~~~~l~~~l---~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 348 (962)
.+.... .. ...+.+.+.+.+++.| .+||+||||||||+. ..|+.+ + +||+||||||++
T Consensus 205 lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~f----~---pGSRILVTTRd~ 275 (1221)
T 1vt4_I 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAF----N---LSCKILLTTRFK 275 (1221)
T ss_dssp HHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHHH----H---SSCCEEEECSCS
T ss_pred HHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChH--HHHHhh----C---CCeEEEEeccCh
Confidence 543211 10 1123456677777766 789999999999983 566654 2 799999999999
Q ss_pred hhHhhhCCCCcccCC------CCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHHHHHHhhhcCCC-Ch
Q 038637 349 DVANLTRAYPKYGLK------ELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAAKTLGGLLRGKD-DL 421 (962)
Q Consensus 349 ~v~~~~~~~~~~~l~------~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~~L~~~~-~~ 421 (962)
.++..+.....|.++ +|+++|||+||+++ ++.. ..++..+| |+|+||||+++|+.|+.+. +.
T Consensus 276 ~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~-~g~~-------~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~ 344 (1221)
T 1vt4_I 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY-LDCR-------PQDLPREV---LTTNPRRLSIIAESIRDGLATW 344 (1221)
T ss_dssp HHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHH-HCCC-------TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSH
T ss_pred HHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHH-cCCC-------HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCH
Confidence 988754433456677 99999999999998 3321 12333444 9999999999999999874 56
Q ss_pred hHHHHHHhhhhhcccccccCchhHHHhhccCCchhh-HhHHhhhcCCCCCceeCHHHHHHHHHHcCCcccccCCCcHHHH
Q 038637 422 TDWEFVLNTDIWKLQEENYGIIPALRVSYHFLPSQL-KQCFAYCSLFPKDYEFQEEEIILLWTAEGFLDQEYNGRKMEDL 500 (962)
Q Consensus 422 ~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~-k~cfl~~~~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~~e~~ 500 (962)
++|... ....+..+|.+||+.||++. |.||+|||+||+++.|+.+.++.+|+++| ++.
T Consensus 345 eeW~~~----------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG-----------eed 403 (1221)
T 1vt4_I 345 DNWKHV----------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----------KSD 403 (1221)
T ss_dssp HHHHHC----------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----------SHH
T ss_pred HHHhcC----------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC-----------HHH
Confidence 788653 13468999999999999999 99999999999999999999999998876 135
Q ss_pred HHHHHHHHhhCCCcccccCCCCcEEEcchhhHHHH
Q 038637 501 GREFVRELHSRSLFQQSSRDASRFVMHDLINDLAR 535 (962)
Q Consensus 501 ~~~~l~~L~~r~ll~~~~~~~~~~~mHdli~d~a~ 535 (962)
++.+|++|+++|||+... ...+|+|||++++++.
T Consensus 404 Ae~~L~eLvdRSLLq~d~-~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 404 VMVVVNKLHKYSLVEKQP-KESTISIPSIYLELKV 437 (1221)
T ss_dssp HHHHHHHHHTSSSSSBCS-SSSEEBCCCHHHHHHH
T ss_pred HHHHHHHHHhhCCEEEeC-CCCEEEehHHHHHHhc
Confidence 889999999999999853 3568999999999663
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.8e-37 Score=404.40 Aligned_cols=310 Identities=20% Similarity=0.313 Sum_probs=249.6
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccch-hccc-ceEEEEEeCCCCC--HHHH
Q 038637 200 EAEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRV-QRHF-QFKAWACVSEDFD--VFRV 275 (962)
Q Consensus 200 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~F-~~~~wv~v~~~~~--~~~~ 275 (962)
...||||++++++|.++|.... +..++|+|+||||+||||||+++|++.+. ..+| +.++||++++..+ ....
T Consensus 123 ~~~~vgR~~~~~~l~~~l~~~~----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 198 (1249)
T 3sfz_A 123 PVIFVTRKKLVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMK 198 (1249)
T ss_dssp CSSCCCCHHHHHHHHHHHHTTT----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHH
T ss_pred CceeccHHHHHHHHHHHHhhcc----CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHH
Confidence 4569999999999999997653 36899999999999999999999997544 4555 4666999998543 4455
Q ss_pred HHHHHHHhccCCC---CCCccHHHHHHHHHhHhCCc--eEEEEEecCCCCCccchhhccCCCCCCCCCcEEEEEecChhh
Q 038637 276 TKSILKSIANDQS---NNDDDLNLLQEKLKKQLSGN--KFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVVTTRNLDV 350 (962)
Q Consensus 276 ~~~il~~l~~~~~---~~~~~~~~~~~~l~~~l~~k--r~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v 350 (962)
+..++..+..... ....+.+.+.+.++..+.++ |+||||||||+. ..|..+ .+||+||||||++.+
T Consensus 199 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~~~-------~~~~~ilvTtR~~~~ 269 (1249)
T 3sfz_A 199 LQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLKAF-------DNQCQILLTTRDKSV 269 (1249)
T ss_dssp HHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHTTT-------CSSCEEEEEESSTTT
T ss_pred HHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHHHhh-------cCCCEEEEEcCCHHH
Confidence 6777777765432 13456788999999999877 999999999874 344443 479999999999999
Q ss_pred Hhh-hCCCCcccCCC-CCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHHHHHHhhhcCCCChhHHHHHH
Q 038637 351 ANL-TRAYPKYGLKE-LSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAAKTLGGLLRGKDDLTDWEFVL 428 (962)
Q Consensus 351 ~~~-~~~~~~~~l~~-L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~~L~~~~~~~~w~~~~ 428 (962)
+.. ......+.+.+ |+++++++||...++.. .+..++++++|+++|+|+||||+++|++|+.++ ..|...+
T Consensus 270 ~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~-----~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l 342 (1249)
T 3sfz_A 270 TDSVMGPKHVVPVESGLGREKGLEILSLFVNMK-----KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYL 342 (1249)
T ss_dssp TTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC-----STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHH
T ss_pred HHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC-----hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHH
Confidence 854 44557788985 99999999999988432 234456799999999999999999999998875 4687777
Q ss_pred hhhhhcccc--------cccCchhHHHhhccCCchhhHhHHhhhcCCCCCceeCHHHHHHHHHHcCCcccccCCCcHHHH
Q 038637 429 NTDIWKLQE--------ENYGIIPALRVSYHFLPSQLKQCFAYCSLFPKDYEFQEEEIILLWTAEGFLDQEYNGRKMEDL 500 (962)
Q Consensus 429 ~~~~~~~~~--------~~~~i~~~l~~sy~~L~~~~k~cfl~~~~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~~e~~ 500 (962)
+........ ....+..++.+||+.||+++|.||+|||+||+++.|+++.++.+|.++ ++.
T Consensus 343 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~------------~~~ 410 (1249)
T 3sfz_A 343 RQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE------------TEE 410 (1249)
T ss_dssp HHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC------------HHH
T ss_pred HHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC------------HHH
Confidence 654332211 113588999999999999999999999999999999999999999543 467
Q ss_pred HHHHHHHHhhCCCcccccCC-CCcEEEcchhhHHHHHhhccc
Q 038637 501 GREFVRELHSRSLFQQSSRD-ASRFVMHDLINDLARWAAGEI 541 (962)
Q Consensus 501 ~~~~l~~L~~r~ll~~~~~~-~~~~~mHdli~d~a~~~~~~~ 541 (962)
+++++++|+++||++....+ ..+|+||++||++|+..+.++
T Consensus 411 ~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 411 VEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 89999999999999976533 336999999999999988765
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=3.7e-34 Score=341.09 Aligned_cols=305 Identities=23% Similarity=0.355 Sum_probs=235.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccch-hcccc-eEEEEEeCCCCCHHHHHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRV-QRHFQ-FKAWACVSEDFDVFRVTKS 278 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~-~~~F~-~~~wv~v~~~~~~~~~~~~ 278 (962)
..||||+.++++|.++|.... ++.++|+|+||||+||||||++++++.++ ..+|+ .++|++++.. +...++..
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~~ 198 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKLK----GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLMK 198 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTST----TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHHH
T ss_pred CeecccHHHHHHHHHHHhccc----CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHHH
Confidence 459999999999999996532 36799999999999999999999997666 78894 7999999876 34444444
Q ss_pred H---HHHhccCC---CCCCccHHHHHHHHHhHhCC--ceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEEEecChhh
Q 038637 279 I---LKSIANDQ---SNNDDDLNLLQEKLKKQLSG--NKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVVTTRNLDV 350 (962)
Q Consensus 279 i---l~~l~~~~---~~~~~~~~~~~~~l~~~l~~--kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v 350 (962)
+ +..++... .....+.+.+...++..+.+ +++||||||+|+. ..++. + .+|++||||||+..+
T Consensus 199 l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--~~l~~----l---~~~~~ilvTsR~~~~ 269 (591)
T 1z6t_A 199 LQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS--WVLKA----F---DSQCQILLTTRDKSV 269 (591)
T ss_dssp HHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--HHHHT----T---CSSCEEEEEESCGGG
T ss_pred HHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH--HHHHH----h---cCCCeEEEECCCcHH
Confidence 3 34444211 11345667788888888876 7899999999864 23322 2 468999999999988
Q ss_pred HhhhCCCCccc---CCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHHHHHHhhhcCCCChhHHHHH
Q 038637 351 ANLTRAYPKYG---LKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAAKTLGGLLRGKDDLTDWEFV 427 (962)
Q Consensus 351 ~~~~~~~~~~~---l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~~L~~~~~~~~w~~~ 427 (962)
+..+. ...++ +++|+.+++++||...++.. .....+.+.+|+++|+|+||||.++|+.|+.++ ..|..+
T Consensus 270 ~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~-----~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~ 341 (591)
T 1z6t_A 270 TDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMK-----KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYY 341 (591)
T ss_dssp GTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC-----GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHH
T ss_pred HHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCC-----cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHH
Confidence 76543 23343 36999999999999987531 122346789999999999999999999998774 368877
Q ss_pred Hhhhhhccc--------ccccCchhHHHhhccCCchhhHhHHhhhcCCCCCceeCHHHHHHHHHHcCCcccccCCCcHHH
Q 038637 428 LNTDIWKLQ--------EENYGIIPALRVSYHFLPSQLKQCFAYCSLFPKDYEFQEEEIILLWTAEGFLDQEYNGRKMED 499 (962)
Q Consensus 428 ~~~~~~~~~--------~~~~~i~~~l~~sy~~L~~~~k~cfl~~~~fp~~~~i~~~~li~~W~aeg~i~~~~~~~~~e~ 499 (962)
++....... .....+..++.+||+.||++.|.||++||+||+++.|+.+.++..|.++ ++
T Consensus 342 l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~------------~~ 409 (591)
T 1z6t_A 342 LKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME------------TE 409 (591)
T ss_dssp HHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC------------HH
T ss_pred HHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC------------HH
Confidence 765432211 1123688899999999999999999999999999999999999999542 34
Q ss_pred HHHHHHHHHhhCCCcccccCC-CCcEEEcchhhHHHHHhhc
Q 038637 500 LGREFVRELHSRSLFQQSSRD-ASRFVMHDLINDLARWAAG 539 (962)
Q Consensus 500 ~~~~~l~~L~~r~ll~~~~~~-~~~~~mHdli~d~a~~~~~ 539 (962)
.++.++++|+++||++....+ ...|+||+++|++++....
T Consensus 410 ~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 410 EVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp HHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred HHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhhh
Confidence 578899999999999865432 3479999999999998743
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.92 E-value=2.8e-24 Score=257.32 Aligned_cols=147 Identities=17% Similarity=0.140 Sum_probs=108.0
Q ss_pred cCCceeEEEEEeeccccccccccccCCCCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCcccc-cccc
Q 038637 557 FSQTLRHFSYICREYDGKKRLESVCDVEHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFNL-PNEI 635 (962)
Q Consensus 557 ~~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~l-p~~i 635 (962)
.+..++++.+..+..... ....+.++++|+.|.+.++. + ..++...|.++++|++|+|++| .+..+ |..|
T Consensus 30 ~~~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~------l-~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~p~~~ 100 (606)
T 3vq2_A 30 IPSSTKNIDLSFNPLKIL-KSYSFSNFSELQWLDLSRCE------I-ETIEDKAWHGLHHLSNLILTGN-PIQSFSPGSF 100 (606)
T ss_dssp SCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCC------C-CEECTTTTTTCTTCCEEECTTC-CCCCCCTTSS
T ss_pred CCCCcCEEECCCCCcCEe-ChhhccCCccCcEEeCCCCc------c-cccCHHHhhchhhcCEeECCCC-cccccChhhc
Confidence 456788888776543322 12357788999999887753 2 2344455788999999999998 56666 7889
Q ss_pred cCCCcCCeEeccCCCCcccc-ccccccccCcEEeeCCCcccc-ccchhcccCCCccEEecCCCCCccccCCCCCCCCCC
Q 038637 636 GNLKHLRCLNLSRTRIQILP-ESINSLYNLHTILLENCWELK-KLCKDMGNLTKLRHLRNSDAGLLEEMPKGFGKLTSL 712 (962)
Q Consensus 636 ~~L~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L 712 (962)
+++.+|++|+|++|.+..+| ..++++++|++|++++|.... .+|..+.++++|++|++++|......|..++.+++|
T Consensus 101 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 179 (606)
T 3vq2_A 101 SGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLREN 179 (606)
T ss_dssp TTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHC
T ss_pred CCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhcc
Confidence 99999999999999998777 678999999999999984332 578889999999999999887443334444444433
No 6
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.92 E-value=8.5e-25 Score=267.86 Aligned_cols=346 Identities=20% Similarity=0.227 Sum_probs=239.0
Q ss_pred CCCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCccccccc-ccCCCcCCeEeccCCCCc-cccccccc
Q 038637 583 VEHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFNLPNE-IGNLKHLRCLNLSRTRIQ-ILPESINS 660 (962)
Q Consensus 583 ~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~lp~~-i~~L~~Lr~L~Ls~~~i~-~lp~~i~~ 660 (962)
+++|+.|.+.++. +...+|. .+.++++|++|+|++|.....+|.. ++++++|++|+|++|.+. .+|..+.+
T Consensus 293 ~~~L~~L~Ls~n~------l~~~~p~-~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~ 365 (768)
T 3rgz_A 293 CDTLTGLDLSGNH------FYGAVPP-FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTN 365 (768)
T ss_dssp CTTCSEEECCSSE------EEECCCG-GGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHH
T ss_pred cCcCCEEECcCCc------CCCccch-HHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHh
Confidence 3677777666542 2333343 3567777777777777333366654 777777888888777776 77777777
Q ss_pred cc-cCcEEeeCCCccccccchhccc--CCCccEEecCCCCCccccCCCCCCCCCCCccCCeEeCCCCCCCcccccCcccC
Q 038637 661 LY-NLHTILLENCWELKKLCKDMGN--LTKLRHLRNSDAGLLEEMPKGFGKLTSLLTLGRFVVGKDSGSGLRELKSLTHL 737 (962)
Q Consensus 661 L~-~L~~L~L~~~~~l~~lp~~i~~--L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L 737 (962)
+. +|++|++++|...+.+|..+.. +++|++|++++|.....+|..++.+++|++|..... ...+.....+.++++|
T Consensus 366 l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L 444 (768)
T 3rgz_A 366 LSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFN-YLSGTIPSSLGSLSKL 444 (768)
T ss_dssp HTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSS-EEESCCCGGGGGCTTC
T ss_pred hhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCC-cccCcccHHHhcCCCC
Confidence 76 7788888777555566666665 777888888887755577777888888877743221 1122333456666667
Q ss_pred CCeEEEeccCCCCChhhhhhhcCcCCcCCCceEEeccCCCCCCccchhhHHhhhccCCCCCCcCeEEEeecCCC-CCCcC
Q 038637 738 QGTLRISKLENVEDVGDACEAQLNNKVNLRTLLLDWSARDVQNLDQCEFETRVLSMLKPHRDVQELTIRGYGGT-KFPIW 816 (962)
Q Consensus 738 ~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~ 816 (962)
+ .|.+.... .....+..+..+++|+.|++.++.. ....+..+..+++|+.|++++|.+. .+|.|
T Consensus 445 ~-~L~L~~n~----l~~~~p~~~~~l~~L~~L~L~~N~l----------~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~ 509 (768)
T 3rgz_A 445 R-DLKLWLNM----LEGEIPQELMYVKTLETLILDFNDL----------TGEIPSGLSNCTNLNWISLSNNRLTGEIPKW 509 (768)
T ss_dssp C-EEECCSSC----CCSCCCGGGGGCTTCCEEECCSSCC----------CSCCCGGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred C-EEECCCCc----ccCcCCHHHcCCCCceEEEecCCcc----------cCcCCHHHhcCCCCCEEEccCCccCCcCChH
Confidence 6 66665432 2223445566778888888887762 2234566777889999999998877 67888
Q ss_pred cCCCCCCCccEEEEeCCCCCCCCC-CCCCCCCcCeEeecCCCCceEeCccccCC--------------------------
Q 038637 817 LGDSSFSKLVNLKFGYCRMCTSLP-SVGQLPLLKHLKISGMDRVKSVGLEFYGS-------------------------- 869 (962)
Q Consensus 817 ~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L~~L~L~~~~~~~~~~~~~~~~-------------------------- 869 (962)
+. .+++|++|+|++|.+.+.+| .++.+++|+.|++++|+....++..+...
T Consensus 510 ~~--~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (768)
T 3rgz_A 510 IG--RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC 587 (768)
T ss_dssp GG--GCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTC
T ss_pred Hh--cCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccc
Confidence 85 78899999999998887777 68889999999998876544444332110
Q ss_pred --------------------------------------CCCCCCCCcceeeccccccccccccccCCccccCcCCccceE
Q 038637 870 --------------------------------------SCSVPFPSLETLSFSDMREWEEWISCGAGQEVDEVFPKLRKL 911 (962)
Q Consensus 870 --------------------------------------~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L 911 (962)
.....+++|+.|+++++. +.... +...+.+++|+.|
T Consensus 588 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~-l~g~i-----p~~l~~l~~L~~L 661 (768)
T 3rgz_A 588 HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNM-LSGYI-----PKEIGSMPYLFIL 661 (768)
T ss_dssp CSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSC-CBSCC-----CGGGGGCTTCCEE
T ss_pred cccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCc-ccccC-----CHHHhccccCCEE
Confidence 011225788889998864 33221 2335678999999
Q ss_pred eEccCCCccccCCC---CCCCcceEEEcccc---CccccCCCCCCcCEEecCCCC
Q 038637 912 SLFNCYKLQGTLPK---RLLLLEKLVIKSCH---RLLVTIQCLPTLTELHTKLCR 960 (962)
Q Consensus 912 ~l~~c~~L~~~lp~---~l~~L~~L~i~~c~---~l~~~l~~l~~L~~L~l~~C~ 960 (962)
++++| +++|.+|. .+++|+.|++++|. .++..+.++++|+.|+|++|+
T Consensus 662 ~Ls~N-~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 662 NLGHN-DISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNN 715 (768)
T ss_dssp ECCSS-CCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSE
T ss_pred eCcCC-ccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCc
Confidence 99997 78888884 57889999999887 446678889999999999874
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.92 E-value=1.4e-24 Score=265.80 Aligned_cols=348 Identities=18% Similarity=0.114 Sum_probs=237.9
Q ss_pred CCCCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCcccccccccCCCcCCeEeccCCCCc-ccccc-cc
Q 038637 582 DVEHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQ-ILPES-IN 659 (962)
Q Consensus 582 ~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~-~lp~~-i~ 659 (962)
.+++|+.|.+.++. +.+.+|..++..+++|++|+|++|.....+|..++++++|++|+|++|.+. .+|.. +.
T Consensus 267 ~l~~L~~L~L~~n~------l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~ 340 (768)
T 3rgz_A 267 PLKSLQYLSLAENK------FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 340 (768)
T ss_dssp CCTTCCEEECCSSE------EEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHT
T ss_pred ccCCCCEEECcCCc------cCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHh
Confidence 45555555555432 333455544444567777777777333356666777777777777777766 66655 66
Q ss_pred ccccCcEEeeCCCccccccchhcccCC-CccEEecCCCCCccccCCCCCC--CCCCCccCCeEeCCCCCCCcccccCccc
Q 038637 660 SLYNLHTILLENCWELKKLCKDMGNLT-KLRHLRNSDAGLLEEMPKGFGK--LTSLLTLGRFVVGKDSGSGLRELKSLTH 736 (962)
Q Consensus 660 ~L~~L~~L~L~~~~~l~~lp~~i~~L~-~L~~L~l~~~~~~~~~p~~i~~--l~~L~~L~~~~~~~~~~~~~~~l~~L~~ 736 (962)
++++|++|++++|...+.+|..+..++ +|++|++++|.....+|..+.. +++|++|..... ...+.....+.++++
T Consensus 341 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~p~~l~~l~~ 419 (768)
T 3rgz_A 341 KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN-GFTGKIPPTLSNCSE 419 (768)
T ss_dssp TCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSS-EEEEECCGGGGGCTT
T ss_pred cCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCC-ccccccCHHHhcCCC
Confidence 777777777777744446676676666 7777777777655556666555 566666632211 111122334566666
Q ss_pred CCCeEEEeccCCCCChhhhhhhcCcCCcCCCceEEeccCCCCCCccchhhHHhhhccCCCCCCcCeEEEeecCCC-CCCc
Q 038637 737 LQGTLRISKLENVEDVGDACEAQLNNKVNLRTLLLDWSARDVQNLDQCEFETRVLSMLKPHRDVQELTIRGYGGT-KFPI 815 (962)
Q Consensus 737 L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~ 815 (962)
|+ .|.+.... .....+..+..+++|+.|.+..+.. ....+..+..+++|+.|++++|.+. .+|.
T Consensus 420 L~-~L~Ls~N~----l~~~~p~~l~~l~~L~~L~L~~n~l----------~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 484 (768)
T 3rgz_A 420 LV-SLHLSFNY----LSGTIPSSLGSLSKLRDLKLWLNML----------EGEIPQELMYVKTLETLILDFNDLTGEIPS 484 (768)
T ss_dssp CC-EEECCSSE----EESCCCGGGGGCTTCCEEECCSSCC----------CSCCCGGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred CC-EEECcCCc----ccCcccHHHhcCCCCCEEECCCCcc----------cCcCCHHHcCCCCceEEEecCCcccCcCCH
Confidence 66 66665432 2223445667788889888887762 2245566777899999999999887 5788
Q ss_pred CcCCCCCCCccEEEEeCCCCCCCCC-CCCCCCCcCeEeecCCCCceEeCccccCCCCCCCCCCcceeecccccccccccc
Q 038637 816 WLGDSSFSKLVNLKFGYCRMCTSLP-SVGQLPLLKHLKISGMDRVKSVGLEFYGSSCSVPFPSLETLSFSDMREWEEWIS 894 (962)
Q Consensus 816 ~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~ 894 (962)
++. .+++|++|+|++|.+.+.+| .++.+++|++|+|++|.....++..+.. +++|+.|++++|+-...++.
T Consensus 485 ~l~--~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~------l~~L~~L~Ls~N~l~g~ip~ 556 (768)
T 3rgz_A 485 GLS--NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD------CRSLIWLDLNTNLFNGTIPA 556 (768)
T ss_dssp GGG--GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGG------CTTCCEEECCSSEEESBCCG
T ss_pred HHh--cCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcC------CCCCCEEECCCCccCCcCCh
Confidence 875 79999999999999998888 7899999999999998776677766654 89999999998653322211
Q ss_pred cc----------------------------------------------------------------CCccccCcCCccce
Q 038637 895 CG----------------------------------------------------------------AGQEVDEVFPKLRK 910 (962)
Q Consensus 895 ~~----------------------------------------------------------------~~~~~~~~~p~L~~ 910 (962)
.. ......+.+++|+.
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~ 636 (768)
T 3rgz_A 557 AMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF 636 (768)
T ss_dssp GGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCE
T ss_pred HHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccE
Confidence 00 00011234688999
Q ss_pred EeEccCCCccccCCC---CCCCcceEEEcccc---CccccCCCCCCcCEEecCCCC
Q 038637 911 LSLFNCYKLQGTLPK---RLLLLEKLVIKSCH---RLLVTIQCLPTLTELHTKLCR 960 (962)
Q Consensus 911 L~l~~c~~L~~~lp~---~l~~L~~L~i~~c~---~l~~~l~~l~~L~~L~l~~C~ 960 (962)
|++++| +++|.+|. .+++|+.|++++|. .++..+.++++|+.|+|++|.
T Consensus 637 LdLs~N-~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~ 691 (768)
T 3rgz_A 637 LDMSYN-MLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNK 691 (768)
T ss_dssp EECCSS-CCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC
T ss_pred EECcCC-cccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCc
Confidence 999998 88888884 57899999999987 456788999999999999985
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.91 E-value=1.4e-24 Score=259.50 Aligned_cols=322 Identities=14% Similarity=0.110 Sum_probs=237.8
Q ss_pred cchhhhCCCCcccEEEeCCCcCccc------------------cccccc--CCCcCCeEeccCCCCc-cccccccccccC
Q 038637 606 VPHMLLNHLPRLRVFSLCGYCNIFN------------------LPNEIG--NLKHLRCLNLSRTRIQ-ILPESINSLYNL 664 (962)
Q Consensus 606 ~~~~~l~~l~~Lr~L~L~~~~~~~~------------------lp~~i~--~L~~Lr~L~Ls~~~i~-~lp~~i~~L~~L 664 (962)
+|.. +.++++|++|+|++| .+.. +|..++ ++++|++|+|++|.+. .+|..++++++|
T Consensus 198 ip~~-l~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 275 (636)
T 4eco_A 198 VSKA-VMRLTKLRQFYMGNS-PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEM 275 (636)
T ss_dssp ECGG-GGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSC
T ss_pred CCHH-HhcccCCCEEECcCC-ccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCC
Confidence 5654 788999999999999 5766 999999 9999999999999876 889999999999
Q ss_pred cEEeeCCCcccc--ccchhcccC------CCccEEecCCCCCccccCC--CCCCCCCCCccCCeEeCCCCCCCcccccCc
Q 038637 665 HTILLENCWELK--KLCKDMGNL------TKLRHLRNSDAGLLEEMPK--GFGKLTSLLTLGRFVVGKDSGSGLRELKSL 734 (962)
Q Consensus 665 ~~L~L~~~~~l~--~lp~~i~~L------~~L~~L~l~~~~~~~~~p~--~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L 734 (962)
++|++++|..+. .+|..+..+ ++|++|++++|. +..+|. .++.+++|++|...... ..+ .+..+..+
T Consensus 276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~-l~g-~ip~~~~l 352 (636)
T 4eco_A 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQ-LEG-KLPAFGSE 352 (636)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCC-CEE-ECCCCEEE
T ss_pred CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCc-Ccc-chhhhCCC
Confidence 999999995244 689988887 999999999998 558998 89999999988433221 111 11155566
Q ss_pred ccCCCeEEEeccCCCCChhhhhhhcCcCCcC-CCceEEeccCCCCCCccchhhHHhhhccCCCC--CCcCeEEEeecCCC
Q 038637 735 THLQGTLRISKLENVEDVGDACEAQLNNKVN-LRTLLLDWSARDVQNLDQCEFETRVLSMLKPH--RDVQELTIRGYGGT 811 (962)
Q Consensus 735 ~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~ 811 (962)
++|+ .|.+.+.. ...++..+..+++ |+.|+++++... .++..+..+ ++|+.|++++|.+.
T Consensus 353 ~~L~-~L~L~~N~-----l~~lp~~l~~l~~~L~~L~Ls~N~l~-----------~lp~~~~~~~l~~L~~L~Ls~N~l~ 415 (636)
T 4eco_A 353 IKLA-SLNLAYNQ-----ITEIPANFCGFTEQVENLSFAHNKLK-----------YIPNIFDAKSVSVMSAIDFSYNEIG 415 (636)
T ss_dssp EEES-EEECCSSE-----EEECCTTSEEECTTCCEEECCSSCCS-----------SCCSCCCTTCSSCEEEEECCSSCTT
T ss_pred CCCC-EEECCCCc-----cccccHhhhhhcccCcEEEccCCcCc-----------ccchhhhhcccCccCEEECcCCcCC
Confidence 6666 66655422 1145556778888 999999887621 344555544 48999999999876
Q ss_pred C-CCcCcCC-----CCCCCccEEEEeCCCCCCCCC--CCCCCCCcCeEeecCCCCceEeCccccCCC--CCCCCCCccee
Q 038637 812 K-FPIWLGD-----SSFSKLVNLKFGYCRMCTSLP--SVGQLPLLKHLKISGMDRVKSVGLEFYGSS--CSVPFPSLETL 881 (962)
Q Consensus 812 ~-~p~~~~~-----~~l~~L~~L~L~~~~~~~~l~--~l~~lp~L~~L~L~~~~~~~~~~~~~~~~~--~~~~f~~L~~L 881 (962)
. .|.++.. ..+++|+.|+|++|.+. .+| .+..+++|++|+|++|.. ..++....... ....+++|+.|
T Consensus 416 ~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l-~~i~~~~~~~~~~~~~~l~~L~~L 493 (636)
T 4eco_A 416 SVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNML-TEIPKNSLKDENENFKNTYLLTSI 493 (636)
T ss_dssp TTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCC-SBCCSSSSEETTEECTTGGGCCEE
T ss_pred CcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCC-CCcCHHHhccccccccccCCccEE
Confidence 4 4555530 14679999999999887 455 355789999999998754 45554432210 00113499999
Q ss_pred eccccccccccccccCCccccC--cCCccceEeEccCCCccccCCC---CCCCcceEEEcccc---------CccccCCC
Q 038637 882 SFSDMREWEEWISCGAGQEVDE--VFPKLRKLSLFNCYKLQGTLPK---RLLLLEKLVIKSCH---------RLLVTIQC 947 (962)
Q Consensus 882 ~l~~~~~l~~~~~~~~~~~~~~--~~p~L~~L~l~~c~~L~~~lp~---~l~~L~~L~i~~c~---------~l~~~l~~ 947 (962)
+++++ .+..++. ... .+++|+.|++++| ++++ +|. .+++|+.|++++|. .++..+.+
T Consensus 494 ~Ls~N-~l~~lp~------~~~~~~l~~L~~L~Ls~N-~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~ 564 (636)
T 4eco_A 494 DLRFN-KLTKLSD------DFRATTLPYLVGIDLSYN-SFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL 564 (636)
T ss_dssp ECCSS-CCCBCCG------GGSTTTCTTCCEEECCSS-CCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGG
T ss_pred ECcCC-cCCccCh------hhhhccCCCcCEEECCCC-CCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhc
Confidence 99986 4554432 233 7899999999998 8884 884 57899999997643 33456778
Q ss_pred CCCcCEEecCCCC
Q 038637 948 LPTLTELHTKLCR 960 (962)
Q Consensus 948 l~~L~~L~l~~C~ 960 (962)
+++|+.|+|++|.
T Consensus 565 l~~L~~L~Ls~N~ 577 (636)
T 4eco_A 565 CPSLTQLQIGSND 577 (636)
T ss_dssp CSSCCEEECCSSC
T ss_pred CCCCCEEECCCCc
Confidence 9999999999985
No 9
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.91 E-value=2.6e-24 Score=261.20 Aligned_cols=321 Identities=13% Similarity=0.115 Sum_probs=236.9
Q ss_pred cchhhhCCCCcccEEEeCCCcCccc------------------cccccc--CCCcCCeEeccCCCCc-cccccccccccC
Q 038637 606 VPHMLLNHLPRLRVFSLCGYCNIFN------------------LPNEIG--NLKHLRCLNLSRTRIQ-ILPESINSLYNL 664 (962)
Q Consensus 606 ~~~~~l~~l~~Lr~L~L~~~~~~~~------------------lp~~i~--~L~~Lr~L~Ls~~~i~-~lp~~i~~L~~L 664 (962)
+|.. +.++++|++|+|++| .+.. +|..++ ++++|++|+|++|.+. .+|..+++|++|
T Consensus 440 IP~~-l~~L~~L~~L~Ls~N-~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L 517 (876)
T 4ecn_A 440 ISKA-IQRLTKLQIIYFANS-PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPEL 517 (876)
T ss_dssp ECGG-GGGCTTCCEEEEESC-CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSC
T ss_pred hhHH-HhcCCCCCEEECcCC-cCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCC
Confidence 5554 788999999999999 5666 999988 9999999999999865 899999999999
Q ss_pred cEEeeCCCcccc--ccchhcccCC-------CccEEecCCCCCccccCC--CCCCCCCCCccCCeEeCCCCCCCcccccC
Q 038637 665 HTILLENCWELK--KLCKDMGNLT-------KLRHLRNSDAGLLEEMPK--GFGKLTSLLTLGRFVVGKDSGSGLRELKS 733 (962)
Q Consensus 665 ~~L~L~~~~~l~--~lp~~i~~L~-------~L~~L~l~~~~~~~~~p~--~i~~l~~L~~L~~~~~~~~~~~~~~~l~~ 733 (962)
++|+|++|..+. .+|..+..++ +|++|++++|. +..+|. .++++++|++|...... .. .+..+.+
T Consensus 518 ~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~-l~--~lp~~~~ 593 (876)
T 4ecn_A 518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNK-VR--HLEAFGT 593 (876)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSC-CC--BCCCCCT
T ss_pred CEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCC-cc--cchhhcC
Confidence 999999995244 5888777766 99999999998 558998 89999999988432221 11 2335666
Q ss_pred cccCCCeEEEeccCCCCChhhhhhhcCcCCcC-CCceEEeccCCCCCCccchhhHHhhhccCCCC--CCcCeEEEeecCC
Q 038637 734 LTHLQGTLRISKLENVEDVGDACEAQLNNKVN-LRTLLLDWSARDVQNLDQCEFETRVLSMLKPH--RDVQELTIRGYGG 810 (962)
Q Consensus 734 L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~ 810 (962)
+++|+ .|.+.+..- . .++..+..+++ |+.|+++++... .++..+... ++|+.|++++|.+
T Consensus 594 L~~L~-~L~Ls~N~l----~-~lp~~l~~l~~~L~~L~Ls~N~L~-----------~lp~~~~~~~~~~L~~L~Ls~N~l 656 (876)
T 4ecn_A 594 NVKLT-DLKLDYNQI----E-EIPEDFCAFTDQVEGLGFSHNKLK-----------YIPNIFNAKSVYVMGSVDFSYNKI 656 (876)
T ss_dssp TSEES-EEECCSSCC----S-CCCTTSCEECTTCCEEECCSSCCC-----------SCCSCCCTTCSSCEEEEECCSSCT
T ss_pred CCcce-EEECcCCcc----c-cchHHHhhccccCCEEECcCCCCC-----------cCchhhhccccCCCCEEECcCCcC
Confidence 77776 666654321 1 35556778888 999999888621 334445544 3499999999987
Q ss_pred CCC-Cc---CcCCCCCCCccEEEEeCCCCCCCCC--CCCCCCCcCeEeecCCCCceEeCccccCCC--CCCCCCCcceee
Q 038637 811 TKF-PI---WLGDSSFSKLVNLKFGYCRMCTSLP--SVGQLPLLKHLKISGMDRVKSVGLEFYGSS--CSVPFPSLETLS 882 (962)
Q Consensus 811 ~~~-p~---~~~~~~l~~L~~L~L~~~~~~~~l~--~l~~lp~L~~L~L~~~~~~~~~~~~~~~~~--~~~~f~~L~~L~ 882 (962)
... |. .+....+++|+.|+|++|.+. .+| .+..+++|+.|+|++|. +..++....... ....+++|+.|+
T Consensus 657 ~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~~~~~~~l~nl~~L~~L~ 734 (876)
T 4ecn_A 657 GSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNL-MTSIPENSLKPKDGNYKNTYLLTTID 734 (876)
T ss_dssp TTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCC-CSCCCTTSSSCTTSCCTTGGGCCEEE
T ss_pred CCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCc-CCccChHHhccccccccccCCccEEE
Confidence 643 32 222124568999999999887 566 34588999999999874 446655443210 011245999999
Q ss_pred ccccccccccccccCCccccC--cCCccceEeEccCCCccccCCC---CCCCcceEEEcccc---------CccccCCCC
Q 038637 883 FSDMREWEEWISCGAGQEVDE--VFPKLRKLSLFNCYKLQGTLPK---RLLLLEKLVIKSCH---------RLLVTIQCL 948 (962)
Q Consensus 883 l~~~~~l~~~~~~~~~~~~~~--~~p~L~~L~l~~c~~L~~~lp~---~l~~L~~L~i~~c~---------~l~~~l~~l 948 (962)
|++| .+..++. ... .+|+|+.|++++| ++++ +|. .+++|+.|++++|+ .++..+.++
T Consensus 735 Ls~N-~L~~lp~------~l~~~~l~~L~~L~Ls~N-~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L 805 (876)
T 4ecn_A 735 LRFN-KLTSLSD------DFRATTLPYLSNMDVSYN-CFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTC 805 (876)
T ss_dssp CCSS-CCCCCCG------GGSTTTCTTCCEEECCSS-CCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGC
T ss_pred CCCC-CCccchH------HhhhccCCCcCEEEeCCC-CCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcC
Confidence 9996 5555432 233 7899999999998 7884 883 57899999998743 234467789
Q ss_pred CCcCEEecCCCC
Q 038637 949 PTLTELHTKLCR 960 (962)
Q Consensus 949 ~~L~~L~l~~C~ 960 (962)
++|+.|+|++|.
T Consensus 806 ~~L~~L~Ls~N~ 817 (876)
T 4ecn_A 806 PSLIQLQIGSND 817 (876)
T ss_dssp SSCCEEECCSSC
T ss_pred CCCCEEECCCCC
Confidence 999999999985
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.90 E-value=1.3e-23 Score=255.07 Aligned_cols=305 Identities=16% Similarity=0.154 Sum_probs=133.8
Q ss_pred CCCcccEEEeCCCcCcccccccccCCCcCCeEeccCCC-Ccc--ccccccccc-------cCcEEeeCCCccccccch--
Q 038637 613 HLPRLRVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTR-IQI--LPESINSLY-------NLHTILLENCWELKKLCK-- 680 (962)
Q Consensus 613 ~l~~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~-i~~--lp~~i~~L~-------~L~~L~L~~~~~l~~lp~-- 680 (962)
++++|++|+|++|.....+|..++++++|++|+|++|. ++. +|..++++. +|++|++++| .+..+|.
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~~ 567 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASA 567 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCBCCCHH
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCccCChh
Confidence 55555555555554344555555555555555555554 442 555554444 5555555555 3335555
Q ss_pred hcccCCCccEEecCCCCCccccCCCCCCCCCCCccCCeEeCCCCCCCcccccCccc-CCCeEEEeccCCCCChhhhhhhc
Q 038637 681 DMGNLTKLRHLRNSDAGLLEEMPKGFGKLTSLLTLGRFVVGKDSGSGLRELKSLTH-LQGTLRISKLENVEDVGDACEAQ 759 (962)
Q Consensus 681 ~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~-L~~~L~i~~l~~~~~~~~~~~~~ 759 (962)
.+.++++|++|++++|. +..+| .++.+++|+.|...... .. .....+.++++ |+ .|.+.+..- . .++..
T Consensus 568 ~l~~L~~L~~L~Ls~N~-l~~lp-~~~~L~~L~~L~Ls~N~-l~-~lp~~l~~l~~~L~-~L~Ls~N~L-~----~lp~~ 637 (876)
T 4ecn_A 568 SLQKMVKLGLLDCVHNK-VRHLE-AFGTNVKLTDLKLDYNQ-IE-EIPEDFCAFTDQVE-GLGFSHNKL-K----YIPNI 637 (876)
T ss_dssp HHTTCTTCCEEECTTSC-CCBCC-CCCTTSEESEEECCSSC-CS-CCCTTSCEECTTCC-EEECCSSCC-C----SCCSC
T ss_pred hhhcCCCCCEEECCCCC-cccch-hhcCCCcceEEECcCCc-cc-cchHHHhhccccCC-EEECcCCCC-C----cCchh
Confidence 55555555555555555 23455 45555555554221111 01 11112333333 43 444332210 0 11122
Q ss_pred CcCCc--CCCceEEeccCCCCC--C-----------------ccchhhHHhhhcc-CCCCCCcCeEEEeecCCCCCCcCc
Q 038637 760 LNNKV--NLRTLLLDWSARDVQ--N-----------------LDQCEFETRVLSM-LKPHRDVQELTIRGYGGTKFPIWL 817 (962)
Q Consensus 760 l~~~~--~L~~L~l~~~~~~~~--~-----------------~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~p~~~ 817 (962)
+..+. +|+.|+++++..... . +..+.+. .++.. +..+++|+.|++++|.+..+|.++
T Consensus 638 ~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~ 716 (876)
T 4ecn_A 638 FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENS 716 (876)
T ss_dssp CCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTS
T ss_pred hhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHH
Confidence 22221 244444444331000 0 0000000 11111 123455666666666555555544
Q ss_pred CCC------CCCCccEEEEeCCCCCCCCC-CCC--CCCCcCeEeecCCCCceEeCccccCCCCCCCCCCcceeecccccc
Q 038637 818 GDS------SFSKLVNLKFGYCRMCTSLP-SVG--QLPLLKHLKISGMDRVKSVGLEFYGSSCSVPFPSLETLSFSDMRE 888 (962)
Q Consensus 818 ~~~------~l~~L~~L~L~~~~~~~~l~-~l~--~lp~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~ 888 (962)
... .+++|+.|+|++|.+. .+| .+. .+++|+.|+|++|.. ..++..+.. +++|+.|+|++++.
T Consensus 717 ~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L-~~lp~~l~~------L~~L~~L~Ls~N~~ 788 (876)
T 4ecn_A 717 LKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCF-SSFPTQPLN------SSQLKAFGIRHQRD 788 (876)
T ss_dssp SSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCC-SSCCCGGGG------CTTCCEEECCCCBC
T ss_pred hccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCC-Cccchhhhc------CCCCCEEECCCCCC
Confidence 311 1125666666666554 344 333 566666666665432 224333332 56666666655331
Q ss_pred ccccccccCCccccCcCCccceEeEccCCCccccCCCC-CCCcceEEEcccc
Q 038637 889 WEEWISCGAGQEVDEVFPKLRKLSLFNCYKLQGTLPKR-LLLLEKLVIKSCH 939 (962)
Q Consensus 889 l~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~lp~~-l~~L~~L~i~~c~ 939 (962)
+......+..+.....+++|+.|++++| .+. .+|.. .++|+.|+|++|+
T Consensus 789 ls~N~l~~~ip~~l~~L~~L~~L~Ls~N-~L~-~Ip~~l~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 789 AEGNRILRQWPTGITTCPSLIQLQIGSN-DIR-KVDEKLTPQLYILDIADNP 838 (876)
T ss_dssp TTCCBCCCCCCTTGGGCSSCCEEECCSS-CCC-BCCSCCCSSSCEEECCSCT
T ss_pred cccccccccChHHHhcCCCCCEEECCCC-CCC-ccCHhhcCCCCEEECCCCC
Confidence 1111000000112334566666666665 443 55542 3556666666665
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.90 E-value=9.4e-24 Score=252.44 Aligned_cols=344 Identities=14% Similarity=0.159 Sum_probs=191.7
Q ss_pred CCCCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCcc--cccccccCC------CcCCeEeccCCCCcc
Q 038637 582 DVEHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIF--NLPNEIGNL------KHLRCLNLSRTRIQI 653 (962)
Q Consensus 582 ~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~--~lp~~i~~L------~~Lr~L~Ls~~~i~~ 653 (962)
++++|+.|.+.++. +...+|. .+.++++|++|+|++|..+. .+|..++.+ ++|++|+|++|.++.
T Consensus 247 ~l~~L~~L~L~~n~------l~~~~p~-~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ 319 (636)
T 4eco_A 247 NLKDLTDVEVYNCP------NLTKLPT-FLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT 319 (636)
T ss_dssp GCTTCCEEEEECCT------TCSSCCT-TTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSS
T ss_pred ccCCCCEEEecCCc------CCccChH-HHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCc
Confidence 56667777665532 3344453 35667777777777773143 466666665 677777777777777
Q ss_pred ccc--cccccccCcEEeeCCCccccccchhcccCCCccEEecCCCCCccccCCCCCCCCC-CCccCCeEeCCCCCCCccc
Q 038637 654 LPE--SINSLYNLHTILLENCWELKKLCKDMGNLTKLRHLRNSDAGLLEEMPKGFGKLTS-LLTLGRFVVGKDSGSGLRE 730 (962)
Q Consensus 654 lp~--~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~-L~~L~~~~~~~~~~~~~~~ 730 (962)
+|. .++++++|++|++++|...+.+| .+..+++|++|++++|. +..+|..++.+++ |++|......- . .....
T Consensus 320 ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~l-~-~lp~~ 395 (636)
T 4eco_A 320 FPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNKL-K-YIPNI 395 (636)
T ss_dssp CCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSE-EEECCTTSEEECTTCCEEECCSSCC-S-SCCSC
T ss_pred cCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCc-cccccHhhhhhcccCcEEEccCCcC-c-ccchh
Confidence 776 67777777777777773333666 66777777777777766 4466766776666 66663321111 1 01111
Q ss_pred ccCc--ccCCCeEEEeccCCCCChhhhhhhcCc-------CCcCCCceEEeccCCCCCCccchhhHHhhhc-cCCCCCCc
Q 038637 731 LKSL--THLQGTLRISKLENVEDVGDACEAQLN-------NKVNLRTLLLDWSARDVQNLDQCEFETRVLS-MLKPHRDV 800 (962)
Q Consensus 731 l~~L--~~L~~~L~i~~l~~~~~~~~~~~~~l~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~-~l~~~~~L 800 (962)
+..+ .+|+ .|.+.... .....+..+. .+.+|+.|+++++... .++. .+..+++|
T Consensus 396 ~~~~~l~~L~-~L~Ls~N~----l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-----------~lp~~~~~~l~~L 459 (636)
T 4eco_A 396 FDAKSVSVMS-AIDFSYNE----IGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-----------KFPKELFSTGSPL 459 (636)
T ss_dssp CCTTCSSCEE-EEECCSSC----TTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-----------SCCTHHHHTTCCC
T ss_pred hhhcccCccC-EEECcCCc----CCCcchhhhcccccccccCCCCCEEECcCCccC-----------cCCHHHHccCCCC
Confidence 1111 1333 33333221 1122222333 4456777777666521 1111 12235677
Q ss_pred CeEEEeecCCCCCCcCcCCC------CCCCccEEEEeCCCCCCCCC-CCC--CCCCcCeEeecCCCCceEeCccccCCCC
Q 038637 801 QELTIRGYGGTKFPIWLGDS------SFSKLVNLKFGYCRMCTSLP-SVG--QLPLLKHLKISGMDRVKSVGLEFYGSSC 871 (962)
Q Consensus 801 ~~L~l~~~~~~~~p~~~~~~------~l~~L~~L~L~~~~~~~~l~-~l~--~lp~L~~L~L~~~~~~~~~~~~~~~~~~ 871 (962)
+.|++++|.+..+|...... .+++|+.|+|++|.+. .+| .+. .+++|+.|+|++|... .++..+..
T Consensus 460 ~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~~--- 534 (636)
T 4eco_A 460 SSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFS-KFPTQPLN--- 534 (636)
T ss_dssp SEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCS-SCCCGGGG---
T ss_pred CEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCC-CcChhhhc---
Confidence 77788777777777655310 1227778888777766 455 444 7778888888776533 35544433
Q ss_pred CCCCCCcceeeccccccccccccccCCccccCcCCccceEeEccCCCccccCCCC-CCCcceEEEccccCccc-------
Q 038637 872 SVPFPSLETLSFSDMREWEEWISCGAGQEVDEVFPKLRKLSLFNCYKLQGTLPKR-LLLLEKLVIKSCHRLLV------- 943 (962)
Q Consensus 872 ~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~lp~~-l~~L~~L~i~~c~~l~~------- 943 (962)
+++|+.|+++++..+..-...+..+...+.+++|+.|++++| +++ .+|.. .++|+.|++++|+-..-
T Consensus 535 ---l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~-~ip~~~~~~L~~L~Ls~N~l~~~~~~~~~~ 609 (636)
T 4eco_A 535 ---SSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN-DIR-KVNEKITPNISVLDIKDNPNISIDLSYVCP 609 (636)
T ss_dssp ---CSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCC-BCCSCCCTTCCEEECCSCTTCEEECTTTHH
T ss_pred ---CCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC-cCC-ccCHhHhCcCCEEECcCCCCccccHHhcch
Confidence 777888887553311111111111122445778888888887 565 67743 36788888887763311
Q ss_pred ----cCCCCCCcCEEecCCCCCC
Q 038637 944 ----TIQCLPTLTELHTKLCRRV 962 (962)
Q Consensus 944 ----~l~~l~~L~~L~l~~C~~L 962 (962)
....+...+..+|.+|+.|
T Consensus 610 ~~~~~~~~l~~~~~~~i~~C~~L 632 (636)
T 4eco_A 610 YIEAGMYMLFYDKTQDIRGCDAL 632 (636)
T ss_dssp HHHTTCCEEECCTTSEEESCGGG
T ss_pred hhhcccceeecCCccccCCCccc
Confidence 1112223455677777754
No 12
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.90 E-value=1.5e-22 Score=242.29 Aligned_cols=147 Identities=10% Similarity=0.095 Sum_probs=105.7
Q ss_pred cCCceeEEEEEeeccccccccccccCCCCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCcccc-cccc
Q 038637 557 FSQTLRHFSYICREYDGKKRLESVCDVEHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFNL-PNEI 635 (962)
Q Consensus 557 ~~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~l-p~~i 635 (962)
++..++++.+..+..... ....+.++++|++|.+.++. + ..+....|.++++|++|+|++| .+..+ |..+
T Consensus 31 l~~~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~------i-~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~ 101 (606)
T 3t6q_A 31 LPNSTECLEFSFNVLPTI-QNTTFSRLINLTFLDLTRCQ------I-YWIHEDTFQSQHRLDTLVLTAN-PLIFMAETAL 101 (606)
T ss_dssp SCTTCCEEECTTCCCSEE-CTTTSTTCTTCSEEECTTCC------C-CEECTTTTTTCTTCCEEECTTC-CCSEECTTTT
T ss_pred CCCcCcEEEccCCccCcC-ChhHhccCccceEEECCCCc------c-ceeChhhccCccccCeeeCCCC-cccccChhhh
Confidence 456778888776644322 12357788999999887753 2 2234445788999999999998 45444 6788
Q ss_pred cCCCcCCeEeccCCCCccc-cccccccccCcEEeeCCCccccccc-hhcccCCCccEEecCCCCCccccCCCCCCCCCCC
Q 038637 636 GNLKHLRCLNLSRTRIQIL-PESINSLYNLHTILLENCWELKKLC-KDMGNLTKLRHLRNSDAGLLEEMPKGFGKLTSLL 713 (962)
Q Consensus 636 ~~L~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~ 713 (962)
+++++|++|+|++|.++.+ |..++++++|++|++++| .+..++ ..+..+++|++|++++|......|..++.+++|+
T Consensus 102 ~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 180 (606)
T 3t6q_A 102 SGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQAT 180 (606)
T ss_dssp SSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSS-CCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCC
T ss_pred cccccccEeeccccCcccCCcchhccCCcccEEECCCC-cccccCcccccCCcccCEEEcccCcccccChhhhhhhcccc
Confidence 8999999999999998877 567888999999999988 555441 3344588899999888874433455567777776
No 13
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.90 E-value=5.3e-23 Score=231.63 Aligned_cols=303 Identities=19% Similarity=0.207 Sum_probs=185.7
Q ss_pred CCCCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCccccc-ccccCCCcCCeEeccCCCCccccc-ccc
Q 038637 582 DVEHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFNLP-NEIGNLKHLRCLNLSRTRIQILPE-SIN 659 (962)
Q Consensus 582 ~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~lp-~~i~~L~~Lr~L~Ls~~~i~~lp~-~i~ 659 (962)
.+++++.|.+.++. ...+|..++.++++|++|+|++| .+..+| ..+..+++|++|+|++|.++.+|. .++
T Consensus 43 ~l~~l~~l~l~~~~-------l~~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 114 (390)
T 3o6n_A 43 TLNNQKIVTFKNST-------MRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ 114 (390)
T ss_dssp GGCCCSEEEEESCE-------ESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred ccCCceEEEecCCc-------hhhCChhHhcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCCCCCcCCHHHhc
Confidence 46788888776642 34577777888999999999999 677765 578999999999999999997754 588
Q ss_pred ccccCcEEeeCCCccccccchhc-ccCCCccEEecCCCCCccccCCCCCCCCCCCccCCeEeCCCCCCCcccccCcccCC
Q 038637 660 SLYNLHTILLENCWELKKLCKDM-GNLTKLRHLRNSDAGLLEEMPKGFGKLTSLLTLGRFVVGKDSGSGLRELKSLTHLQ 738 (962)
Q Consensus 660 ~L~~L~~L~L~~~~~l~~lp~~i-~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~ 738 (962)
++++|++|++++| .+..+|..+ ..+++|++|++++|......|..++.+++|++|...... .... .+..++.|+
T Consensus 115 ~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~---~~~~l~~L~ 189 (390)
T 3o6n_A 115 NVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHV---DLSLIPSLF 189 (390)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC-CSBC---CGGGCTTCS
T ss_pred CCCCCCEEECCCC-ccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc-CCcc---ccccccccc
Confidence 9999999999999 777888764 889999999999998444445568888888888432211 1111 223334443
Q ss_pred CeEEEeccCCCCChhhhhhhcCcCCcCCCceEEeccCCCCCCccchhhHHhhhccCCCCCCcCeEEEeecCCCCCCcCcC
Q 038637 739 GTLRISKLENVEDVGDACEAQLNNKVNLRTLLLDWSARDVQNLDQCEFETRVLSMLKPHRDVQELTIRGYGGTKFPIWLG 818 (962)
Q Consensus 739 ~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~ 818 (962)
.+.+.... ...+....+|+.|+++++... .++. ..+++|+.|++++|.+...+ ++.
T Consensus 190 -~L~l~~n~---------l~~~~~~~~L~~L~l~~n~l~-----------~~~~--~~~~~L~~L~l~~n~l~~~~-~l~ 245 (390)
T 3o6n_A 190 -HANVSYNL---------LSTLAIPIAVEELDASHNSIN-----------VVRG--PVNVELTILKLQHNNLTDTA-WLL 245 (390)
T ss_dssp -EEECCSSC---------CSEEECCSSCSEEECCSSCCC-----------EEEC--CCCSSCCEEECCSSCCCCCG-GGG
T ss_pred -eeeccccc---------ccccCCCCcceEEECCCCeee-----------eccc--cccccccEEECCCCCCcccH-HHc
Confidence 44333211 011222345666666555411 0111 12356666666666655443 332
Q ss_pred CCCCCCccEEEEeCCCCCCCCC-CCCCCCCcCeEeecCCCCceEeCccccCCCCCCCCCCcceeeccccccccccccccC
Q 038637 819 DSSFSKLVNLKFGYCRMCTSLP-SVGQLPLLKHLKISGMDRVKSVGLEFYGSSCSVPFPSLETLSFSDMREWEEWISCGA 897 (962)
Q Consensus 819 ~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~ 897 (962)
.+++|++|+|++|.+.+..| .++.+++|+.|++++|. +..++..+. .+|+|+.|+++++ .+..++.
T Consensus 246 --~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~------~l~~L~~L~L~~n-~l~~~~~--- 312 (390)
T 3o6n_A 246 --NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQ------PIPTLKVLDLSHN-HLLHVER--- 312 (390)
T ss_dssp --GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSC-CCEEECSSS------CCTTCCEEECCSS-CCCCCGG---
T ss_pred --CCCCccEEECCCCcCCCcChhHccccccCCEEECCCCc-CcccCcccC------CCCCCCEEECCCC-cceecCc---
Confidence 56666666666666554433 45666666666666643 333332221 1566666666664 3333311
Q ss_pred CccccCcCCccceEeEccCCCccccCC-CCCCCcceEEEcccc
Q 038637 898 GQEVDEVFPKLRKLSLFNCYKLQGTLP-KRLLLLEKLVIKSCH 939 (962)
Q Consensus 898 ~~~~~~~~p~L~~L~l~~c~~L~~~lp-~~l~~L~~L~i~~c~ 939 (962)
..+.+++|+.|++++| .++ .+| ..+++|+.|++++++
T Consensus 313 ---~~~~l~~L~~L~L~~N-~i~-~~~~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 313 ---NQPQFDRLENLYLDHN-SIV-TLKLSTHHTLKNLTLSHND 350 (390)
T ss_dssp ---GHHHHTTCSEEECCSS-CCC-CCCCCTTCCCSEEECCSSC
T ss_pred ---cccccCcCCEEECCCC-ccc-eeCchhhccCCEEEcCCCC
Confidence 1234566666666665 455 333 455666666666554
No 14
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.90 E-value=1.8e-22 Score=241.57 Aligned_cols=351 Identities=18% Similarity=0.162 Sum_probs=211.2
Q ss_pred CCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCcccc-cccccCCCcCCeEeccCCCCccc-ccccccc
Q 038637 584 EHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFNL-PNEIGNLKHLRCLNLSRTRIQIL-PESINSL 661 (962)
Q Consensus 584 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~l-p~~i~~L~~Lr~L~Ls~~~i~~l-p~~i~~L 661 (962)
++++.|.+.++. + ..++...|.++++|++|+|++| .+..+ |..|+++++|++|+|++|.++.+ |..++++
T Consensus 32 ~~l~~L~Ls~n~------l-~~~~~~~~~~l~~L~~L~Ls~n-~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l 103 (606)
T 3vq2_A 32 SSTKNIDLSFNP------L-KILKSYSFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGL 103 (606)
T ss_dssp TTCCEEECTTSC------C-CEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTC
T ss_pred CCcCEEECCCCC------c-CEeChhhccCCccCcEEeCCCC-cccccCHHHhhchhhcCEeECCCCcccccChhhcCCc
Confidence 788999887753 2 3345556889999999999999 67666 67899999999999999999977 7889999
Q ss_pred ccCcEEeeCCCccccccc-hhcccCCCccEEecCCCCCcc-ccCCCCCCCCCCCccCCeEeCCCCCCCcccccCcccCCC
Q 038637 662 YNLHTILLENCWELKKLC-KDMGNLTKLRHLRNSDAGLLE-EMPKGFGKLTSLLTLGRFVVGKDSGSGLRELKSLTHLQG 739 (962)
Q Consensus 662 ~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~-~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~ 739 (962)
++|++|++++| .+..+| ..+.++++|++|++++|.... .+|..++++++|++|..... .........+..+.+|+.
T Consensus 104 ~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~ 181 (606)
T 3vq2_A 104 TSLENLVAVET-KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN-YIQTITVNDLQFLRENPQ 181 (606)
T ss_dssp TTCCEEECTTS-CCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS-CCCEECTTTTHHHHHCTT
T ss_pred ccCCEEEccCC-ccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC-cceecChhhhhhhhcccc
Confidence 99999999999 565555 679999999999999998443 57889999999999843221 111111122223332221
Q ss_pred ---eEEEeccC--------------------CCCChhhhhhhcCcCCcCCCceEEeccCCCC----CCc-----------
Q 038637 740 ---TLRISKLE--------------------NVEDVGDACEAQLNNKVNLRTLLLDWSARDV----QNL----------- 781 (962)
Q Consensus 740 ---~L~i~~l~--------------------~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~----~~~----------- 781 (962)
.+.+.... .........+..+.++..|+.+.+....... ...
T Consensus 182 ~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l 261 (606)
T 3vq2_A 182 VNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV 261 (606)
T ss_dssp CCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGS
T ss_pred ccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhc
Confidence 23322110 0000011122222233333333332211000 000
Q ss_pred --------cchhhHHhhhccCCCCCCcCeEEEeecCCCCCCcCcCCCCCCCccEEEEeCCCCCCCCCCCCCCCCcCeEee
Q 038637 782 --------DQCEFETRVLSMLKPHRDVQELTIRGYGGTKFPIWLGDSSFSKLVNLKFGYCRMCTSLPSVGQLPLLKHLKI 853 (962)
Q Consensus 782 --------~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~lp~L~~L~L 853 (962)
..+......+. +..+++|+.|+++++.+..+| ++. .+++|+.|++++|.+ +.+|.+ .+++|+.|++
T Consensus 262 ~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~-~l~--~~~~L~~L~l~~n~l-~~lp~~-~l~~L~~L~l 335 (606)
T 3vq2_A 262 TIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYLE-DVP--KHFKWQSLSIIRCQL-KQFPTL-DLPFLKSLTL 335 (606)
T ss_dssp EEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCCC-CCC--TTCCCSEEEEESCCC-SSCCCC-CCSSCCEEEE
T ss_pred cHhheeccccccccccccc-cccCCCCCEEEecCccchhhh-hcc--ccccCCEEEcccccC-cccccC-CCCccceeec
Confidence 01111122232 556778888888888877777 553 677888888888877 667766 7788888888
Q ss_pred cCCCCceEeCccccCCCCCCCCCCcceeecccccccccccccc--------------------CCccccCcCCccceEeE
Q 038637 854 SGMDRVKSVGLEFYGSSCSVPFPSLETLSFSDMREWEEWISCG--------------------AGQEVDEVFPKLRKLSL 913 (962)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~--------------------~~~~~~~~~p~L~~L~l 913 (962)
++|..+..+. +. .+++|+.|+++++. +....... ........+++|+.|++
T Consensus 336 ~~n~~~~~~~--~~------~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l 406 (606)
T 3vq2_A 336 TMNKGSISFK--KV------ALPSLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDF 406 (606)
T ss_dssp ESCSSCEECC--CC------CCTTCCEEECCSSC-EEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEEC
T ss_pred cCCcCccchh--hc------cCCCCCEEECcCCc-cCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeEC
Confidence 7775444331 11 15555555555432 11110000 00011334566666666
Q ss_pred ccCCCccccCC----CCCCCcceEEEccccCc---cccCCCCCCcCEEecCCCC
Q 038637 914 FNCYKLQGTLP----KRLLLLEKLVIKSCHRL---LVTIQCLPTLTELHTKLCR 960 (962)
Q Consensus 914 ~~c~~L~~~lp----~~l~~L~~L~i~~c~~l---~~~l~~l~~L~~L~l~~C~ 960 (962)
++| ++.+..| ..+++|+.|++++|... +..+..+++|+.|++++|.
T Consensus 407 ~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 459 (606)
T 3vq2_A 407 QHS-TLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS 459 (606)
T ss_dssp TTS-EEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE
T ss_pred CCC-ccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCc
Confidence 665 4443333 24567777777776632 2346667777777777763
No 15
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.89 E-value=2.7e-22 Score=231.24 Aligned_cols=338 Identities=19% Similarity=0.238 Sum_probs=229.7
Q ss_pred CceeEEEEEeeccccccccccccCCCCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCcccccccccCC
Q 038637 559 QTLRHFSYICREYDGKKRLESVCDVEHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFNLPNEIGNL 638 (962)
Q Consensus 559 ~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~lp~~i~~L 638 (962)
..++.+.+..... ..++.+..+++|+.|.+.++. + ..++. +.++++|++|++++| .+..++. ++++
T Consensus 46 ~~l~~L~l~~~~i---~~l~~~~~l~~L~~L~Ls~n~------l-~~~~~--~~~l~~L~~L~l~~n-~l~~~~~-~~~l 111 (466)
T 1o6v_A 46 DQVTTLQADRLGI---KSIDGVEYLNNLTQINFSNNQ------L-TDITP--LKNLTKLVDILMNNN-QIADITP-LANL 111 (466)
T ss_dssp HTCCEEECCSSCC---CCCTTGGGCTTCCEEECCSSC------C-CCCGG--GTTCTTCCEEECCSS-CCCCCGG-GTTC
T ss_pred ccccEEecCCCCC---ccCcchhhhcCCCEEECCCCc------c-CCchh--hhccccCCEEECCCC-ccccChh-hcCC
Confidence 3466666654432 234456677888888777653 2 22333 678888888888888 6777766 8888
Q ss_pred CcCCeEeccCCCCccccccccccccCcEEeeCCCccccccchhcccCCCccEEecCCCCCccccCCCCCCCCCCCccCCe
Q 038637 639 KHLRCLNLSRTRIQILPESINSLYNLHTILLENCWELKKLCKDMGNLTKLRHLRNSDAGLLEEMPKGFGKLTSLLTLGRF 718 (962)
Q Consensus 639 ~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~ 718 (962)
++|++|+|++|.++.+|. +.++++|++|++++| .+..+|. +..+++|++|+++.+ ...++. ++.+++|++|...
T Consensus 112 ~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~~--~~~~~~-~~~l~~L~~L~l~ 185 (466)
T 1o6v_A 112 TNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSN-TISDISA-LSGLTSLQQLSFGNQ--VTDLKP-LANLTTLERLDIS 185 (466)
T ss_dssp TTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEE-EECCCGG-GTTCTTCSEEEEEES--CCCCGG-GTTCTTCCEEECC
T ss_pred CCCCEEECCCCCCCCChH-HcCCCCCCEEECCCC-ccCCChh-hccCCcccEeecCCc--ccCchh-hccCCCCCEEECc
Confidence 888888888888888776 788888888888888 5666663 788888888888642 233332 6777777776432
Q ss_pred EeCCCCCCCcccccCcccCCCeEEEeccCCCCChhhhhhhcCcCCcCCCceEEeccCCCCCCccchhhHHhhhccCCCCC
Q 038637 719 VVGKDSGSGLRELKSLTHLQGTLRISKLENVEDVGDACEAQLNNKVNLRTLLLDWSARDVQNLDQCEFETRVLSMLKPHR 798 (962)
Q Consensus 719 ~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 798 (962)
.. .-..+..+..+++|+ .|.+.+..-. .. ..+..+++|+.|+++++... . ...+..++
T Consensus 186 ~n---~l~~~~~l~~l~~L~-~L~l~~n~l~-~~-----~~~~~l~~L~~L~l~~n~l~-----~-------~~~l~~l~ 243 (466)
T 1o6v_A 186 SN---KVSDISVLAKLTNLE-SLIATNNQIS-DI-----TPLGILTNLDELSLNGNQLK-----D-------IGTLASLT 243 (466)
T ss_dssp SS---CCCCCGGGGGCTTCS-EEECCSSCCC-CC-----GGGGGCTTCCEEECCSSCCC-----C-------CGGGGGCT
T ss_pred CC---cCCCChhhccCCCCC-EEEecCCccc-cc-----ccccccCCCCEEECCCCCcc-----c-------chhhhcCC
Confidence 21 222334566666776 6666543211 11 11456778888888877521 1 12355678
Q ss_pred CcCeEEEeecCCCCCCcCcCCCCCCCccEEEEeCCCCCCCCCCCCCCCCcCeEeecCCCCceEeCccccCCCCCCCCCCc
Q 038637 799 DVQELTIRGYGGTKFPIWLGDSSFSKLVNLKFGYCRMCTSLPSVGQLPLLKHLKISGMDRVKSVGLEFYGSSCSVPFPSL 878 (962)
Q Consensus 799 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L 878 (962)
+|+.|++++|.+..++. +. .+++|+.|++++|.+.. ++.+..+++|+.|++++|.. ..++. +. .+++|
T Consensus 244 ~L~~L~l~~n~l~~~~~-~~--~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~L~~n~l-~~~~~-~~------~l~~L 311 (466)
T 1o6v_A 244 NLTDLDLANNQISNLAP-LS--GLTKLTELKLGANQISN-ISPLAGLTALTNLELNENQL-EDISP-IS------NLKNL 311 (466)
T ss_dssp TCSEEECCSSCCCCCGG-GT--TCTTCSEEECCSSCCCC-CGGGTTCTTCSEEECCSSCC-SCCGG-GG------GCTTC
T ss_pred CCCEEECCCCccccchh-hh--cCCCCCEEECCCCccCc-cccccCCCccCeEEcCCCcc-cCchh-hc------CCCCC
Confidence 89999999888877765 32 68889999999887765 44478888999999988753 33322 21 28899
Q ss_pred ceeeccccccccccccccCCccccCcCCccceEeEccCCCccccCC--CCCCCcceEEEccccCc-cccCCCCCCcCEEe
Q 038637 879 ETLSFSDMREWEEWISCGAGQEVDEVFPKLRKLSLFNCYKLQGTLP--KRLLLLEKLVIKSCHRL-LVTIQCLPTLTELH 955 (962)
Q Consensus 879 ~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~lp--~~l~~L~~L~i~~c~~l-~~~l~~l~~L~~L~ 955 (962)
+.|++++|. +..+.. ...+++|+.|++++| +++ .++ ..+++|+.|++.+|.-. ...+..+++|+.|+
T Consensus 312 ~~L~L~~n~-l~~~~~-------~~~l~~L~~L~l~~n-~l~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ 381 (466)
T 1o6v_A 312 TYLTLYFNN-ISDISP-------VSSLTKLQRLFFYNN-KVS-DVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLG 381 (466)
T ss_dssp SEEECCSSC-CSCCGG-------GGGCTTCCEEECCSS-CCC-CCGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCCEEE
T ss_pred CEEECcCCc-CCCchh-------hccCccCCEeECCCC-ccC-CchhhccCCCCCEEeCCCCccCccchhhcCCCCCEEe
Confidence 999998863 444322 456889999999988 677 344 46788999999888632 12367888999999
Q ss_pred cCCCC
Q 038637 956 TKLCR 960 (962)
Q Consensus 956 l~~C~ 960 (962)
+++|+
T Consensus 382 l~~n~ 386 (466)
T 1o6v_A 382 LNDQA 386 (466)
T ss_dssp CCCEE
T ss_pred ccCCc
Confidence 98874
No 16
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.89 E-value=1.8e-22 Score=232.81 Aligned_cols=319 Identities=20% Similarity=0.278 Sum_probs=245.0
Q ss_pred CCCCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCcccccccccCCCcCCeEeccCCCCcccccccccc
Q 038637 582 DVEHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSL 661 (962)
Q Consensus 582 ~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L 661 (962)
+++++++|.+.++. ...++. +..+++|++|+|++| .+..+|. ++++++|++|++++|.+..+|. ++++
T Consensus 44 ~l~~l~~L~l~~~~-------i~~l~~--~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l 111 (466)
T 1o6v_A 44 DLDQVTTLQADRLG-------IKSIDG--VEYLNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNNQIADITP-LANL 111 (466)
T ss_dssp HHHTCCEEECCSSC-------CCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTC
T ss_pred HhccccEEecCCCC-------CccCcc--hhhhcCCCEEECCCC-ccCCchh-hhccccCCEEECCCCccccChh-hcCC
Confidence 45778888877643 123442 567999999999999 7888877 9999999999999999998887 9999
Q ss_pred ccCcEEeeCCCccccccchhcccCCCccEEecCCCCCccccCCCCCCCCCCCccCCeEeCCCCCCCcccccCcccCCCeE
Q 038637 662 YNLHTILLENCWELKKLCKDMGNLTKLRHLRNSDAGLLEEMPKGFGKLTSLLTLGRFVVGKDSGSGLRELKSLTHLQGTL 741 (962)
Q Consensus 662 ~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L 741 (962)
++|++|++++| .+..+|. +..+++|++|++++|. +..+| .++.+++|++|... . ....+..+.++++|+ .|
T Consensus 112 ~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~-~~~~l~~L~~L~l~-~---~~~~~~~~~~l~~L~-~L 182 (466)
T 1o6v_A 112 TNLTGLTLFNN-QITDIDP-LKNLTNLNRLELSSNT-ISDIS-ALSGLTSLQQLSFG-N---QVTDLKPLANLTTLE-RL 182 (466)
T ss_dssp TTCCEEECCSS-CCCCCGG-GTTCTTCSEEEEEEEE-ECCCG-GGTTCTTCSEEEEE-E---SCCCCGGGTTCTTCC-EE
T ss_pred CCCCEEECCCC-CCCCChH-HcCCCCCCEEECCCCc-cCCCh-hhccCCcccEeecC-C---cccCchhhccCCCCC-EE
Confidence 99999999999 7777776 8999999999999987 55555 48889999988542 1 122334577788887 78
Q ss_pred EEeccCCCCChhhhhhhcCcCCcCCCceEEeccCCCCCCccchhhHHhhhccCCCCCCcCeEEEeecCCCCCCcCcCCCC
Q 038637 742 RISKLENVEDVGDACEAQLNNKVNLRTLLLDWSARDVQNLDQCEFETRVLSMLKPHRDVQELTIRGYGGTKFPIWLGDSS 821 (962)
Q Consensus 742 ~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~ 821 (962)
.+....- ... ..+..+++|+.|.++++... . . ..+..+++|+.|++++|.+..++. +. .
T Consensus 183 ~l~~n~l-~~~-----~~l~~l~~L~~L~l~~n~l~-----~------~-~~~~~l~~L~~L~l~~n~l~~~~~-l~--~ 241 (466)
T 1o6v_A 183 DISSNKV-SDI-----SVLAKLTNLESLIATNNQIS-----D------I-TPLGILTNLDELSLNGNQLKDIGT-LA--S 241 (466)
T ss_dssp ECCSSCC-CCC-----GGGGGCTTCSEEECCSSCCC-----C------C-GGGGGCTTCCEEECCSSCCCCCGG-GG--G
T ss_pred ECcCCcC-CCC-----hhhccCCCCCEEEecCCccc-----c------c-ccccccCCCCEEECCCCCcccchh-hh--c
Confidence 7765431 111 23677889999999887621 1 1 114557899999999998887764 32 7
Q ss_pred CCCccEEEEeCCCCCCCCCCCCCCCCcCeEeecCCCCceEeCccccCCCCCCCCCCcceeeccccccccccccccCCccc
Q 038637 822 FSKLVNLKFGYCRMCTSLPSVGQLPLLKHLKISGMDRVKSVGLEFYGSSCSVPFPSLETLSFSDMREWEEWISCGAGQEV 901 (962)
Q Consensus 822 l~~L~~L~L~~~~~~~~l~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~ 901 (962)
+++|+.|++++|.+... +.+..+++|+.|++++|. +..++. +. .+++|+.|+++++ .+..+..
T Consensus 242 l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~-l~~~~~-~~------~l~~L~~L~L~~n-~l~~~~~------- 304 (466)
T 1o6v_A 242 LTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQ-ISNISP-LA------GLTALTNLELNEN-QLEDISP------- 304 (466)
T ss_dssp CTTCSEEECCSSCCCCC-GGGTTCTTCSEEECCSSC-CCCCGG-GT------TCTTCSEEECCSS-CCSCCGG-------
T ss_pred CCCCCEEECCCCccccc-hhhhcCCCCCEEECCCCc-cCcccc-cc------CCCccCeEEcCCC-cccCchh-------
Confidence 89999999999987654 448899999999999875 333332 22 2899999999986 3444422
Q ss_pred cCcCCccceEeEccCCCccccCC-CCCCCcceEEEccccCc-cccCCCCCCcCEEecCCCC
Q 038637 902 DEVFPKLRKLSLFNCYKLQGTLP-KRLLLLEKLVIKSCHRL-LVTIQCLPTLTELHTKLCR 960 (962)
Q Consensus 902 ~~~~p~L~~L~l~~c~~L~~~lp-~~l~~L~~L~i~~c~~l-~~~l~~l~~L~~L~l~~C~ 960 (962)
.+.+|+|+.|++++| ++++..| ..+++|+.|++.+|.-- ...+.++++|+.|++++|+
T Consensus 305 ~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 305 ISNLKNLTYLTLYFN-NISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQ 364 (466)
T ss_dssp GGGCTTCSEEECCSS-CCSCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC
T ss_pred hcCCCCCCEEECcCC-cCCCchhhccCccCCEeECCCCccCCchhhccCCCCCEEeCCCCc
Confidence 457899999999998 7774444 56899999999999622 2467889999999999985
No 17
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=8.3e-23 Score=242.92 Aligned_cols=303 Identities=19% Similarity=0.209 Sum_probs=194.7
Q ss_pred CCCCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCccccc-ccccCCCcCCeEeccCCCCccccc-ccc
Q 038637 582 DVEHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFNLP-NEIGNLKHLRCLNLSRTRIQILPE-SIN 659 (962)
Q Consensus 582 ~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~lp-~~i~~L~~Lr~L~Ls~~~i~~lp~-~i~ 659 (962)
.+.+++.+.+.++. ...+|..++.++++|++|+|++| .+..+| ..|+.+++|++|+|++|.++.+|. .++
T Consensus 49 ~l~~l~~l~l~~~~-------l~~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 120 (597)
T 3oja_B 49 TLNNQKIVTFKNST-------MRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ 120 (597)
T ss_dssp GGCCCSEEEESSCE-------ESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cCCCceEEEeeCCC-------CCCcCHHHHccCCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHc
Confidence 45677877766642 34577788889999999999999 577665 589999999999999999997776 468
Q ss_pred ccccCcEEeeCCCccccccchh-cccCCCccEEecCCCCCccccCCCCCCCCCCCccCCeEeCCCCCCCcccccCcccCC
Q 038637 660 SLYNLHTILLENCWELKKLCKD-MGNLTKLRHLRNSDAGLLEEMPKGFGKLTSLLTLGRFVVGKDSGSGLRELKSLTHLQ 738 (962)
Q Consensus 660 ~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~ 738 (962)
++++|++|+|++| .+..+|.. +.++++|++|++++|......|..++.+++|++|..... ..... .+..++.|+
T Consensus 121 ~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~---~~~~l~~L~ 195 (597)
T 3oja_B 121 NVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHV---DLSLIPSLF 195 (597)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS-CCSBC---CGGGCTTCS
T ss_pred CCCCCCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC-CCCCc---Chhhhhhhh
Confidence 9999999999999 77788776 489999999999999855555557888999888843221 11111 233344444
Q ss_pred CeEEEeccCCCCChhhhhhhcCcCCcCCCceEEeccCCCCCCccchhhHHhhhccCCCCCCcCeEEEeecCCCCCCcCcC
Q 038637 739 GTLRISKLENVEDVGDACEAQLNNKVNLRTLLLDWSARDVQNLDQCEFETRVLSMLKPHRDVQELTIRGYGGTKFPIWLG 818 (962)
Q Consensus 739 ~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~ 818 (962)
.|.+.... ...+....+|+.|+++++... .++. ..+++|+.|++++|.+... .++.
T Consensus 196 -~L~l~~n~---------l~~l~~~~~L~~L~ls~n~l~-----------~~~~--~~~~~L~~L~L~~n~l~~~-~~l~ 251 (597)
T 3oja_B 196 -HANVSYNL---------LSTLAIPIAVEELDASHNSIN-----------VVRG--PVNVELTILKLQHNNLTDT-AWLL 251 (597)
T ss_dssp -EEECCSSC---------CSEEECCTTCSEEECCSSCCC-----------EEEC--SCCSCCCEEECCSSCCCCC-GGGG
T ss_pred -hhhcccCc---------cccccCCchhheeeccCCccc-----------cccc--ccCCCCCEEECCCCCCCCC-hhhc
Confidence 44433211 011223345666666655411 1111 1124677777777766543 3443
Q ss_pred CCCCCCccEEEEeCCCCCCCCC-CCCCCCCcCeEeecCCCCceEeCccccCCCCCCCCCCcceeeccccccccccccccC
Q 038637 819 DSSFSKLVNLKFGYCRMCTSLP-SVGQLPLLKHLKISGMDRVKSVGLEFYGSSCSVPFPSLETLSFSDMREWEEWISCGA 897 (962)
Q Consensus 819 ~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~ 897 (962)
.+++|+.|+|++|.+.+..| .++.+++|+.|+|++|. +..++..+. .+|+|+.|+|++|. +..++.
T Consensus 252 --~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~------~l~~L~~L~Ls~N~-l~~i~~--- 318 (597)
T 3oja_B 252 --NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR-LVALNLYGQ------PIPTLKVLDLSHNH-LLHVER--- 318 (597)
T ss_dssp --GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSC-CCEEECSSS------CCTTCCEEECCSSC-CCCCGG---
T ss_pred --cCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCC-CCCCCcccc------cCCCCcEEECCCCC-CCccCc---
Confidence 56777777777776665544 56667777777777653 334433221 26777777777643 333321
Q ss_pred CccccCcCCccceEeEccCCCccccCC-CCCCCcceEEEcccc
Q 038637 898 GQEVDEVFPKLRKLSLFNCYKLQGTLP-KRLLLLEKLVIKSCH 939 (962)
Q Consensus 898 ~~~~~~~~p~L~~L~l~~c~~L~~~lp-~~l~~L~~L~i~~c~ 939 (962)
..+.+|+|+.|++++| .++ .+| ..+++|+.|++++|+
T Consensus 319 ---~~~~l~~L~~L~L~~N-~l~-~~~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 319 ---NQPQFDRLENLYLDHN-SIV-TLKLSTHHTLKNLTLSHND 356 (597)
T ss_dssp ---GHHHHTTCSEEECCSS-CCC-CCCCCTTCCCSEEECCSSC
T ss_pred ---ccccCCCCCEEECCCC-CCC-CcChhhcCCCCEEEeeCCC
Confidence 1334677777777776 455 233 556677777776655
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.89 E-value=1.9e-22 Score=236.44 Aligned_cols=121 Identities=17% Similarity=0.147 Sum_probs=98.4
Q ss_pred CCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCcccc-cccccCCCcCCeEeccCCCCccccccccccc
Q 038637 584 EHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFNL-PNEIGNLKHLRCLNLSRTRIQILPESINSLY 662 (962)
Q Consensus 584 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~l-p~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~ 662 (962)
++++.|.+.++. + ..++...|.++++|++|+|++| .+..+ |..|+++++|++|+|++|.++.+|.. .++
T Consensus 21 ~~L~~L~Ls~n~------i-~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~ 90 (520)
T 2z7x_B 21 QKTTILNISQNY------I-SELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTV 90 (520)
T ss_dssp TTCSEEECCSSC------C-CCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCC
T ss_pred ccccEEECCCCc------c-cccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCCCceeecCcc--ccC
Confidence 789999888753 2 3455556889999999999999 56666 78899999999999999999999988 899
Q ss_pred cCcEEeeCCCcccc-ccchhcccCCCccEEecCCCCCccccCCCCCCCCCC--CccCC
Q 038637 663 NLHTILLENCWELK-KLCKDMGNLTKLRHLRNSDAGLLEEMPKGFGKLTSL--LTLGR 717 (962)
Q Consensus 663 ~L~~L~L~~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L--~~L~~ 717 (962)
+|++|++++|.... .+|..++++++|++|++++|.... ..++.+++| ++|..
T Consensus 91 ~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l 145 (520)
T 2z7x_B 91 NLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLL 145 (520)
T ss_dssp CCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEE
T ss_pred CccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEe
Confidence 99999999994333 467899999999999999988433 346667777 77643
No 19
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=1.5e-22 Score=224.14 Aligned_cols=302 Identities=19% Similarity=0.252 Sum_probs=197.0
Q ss_pred cccCCCCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCcccccccccCCCcCCeEeccCCCCccccccc
Q 038637 579 SVCDVEHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESI 658 (962)
Q Consensus 579 ~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i 658 (962)
.+..+++|++|.+.++. + ..++. +..+++|++|++++| .+..+|. +.++++|++|++++|.++.+| .+
T Consensus 39 ~~~~l~~L~~L~l~~~~------i-~~~~~--~~~~~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~ 106 (347)
T 4fmz_A 39 TQEELESITKLVVAGEK------V-ASIQG--IEYLTNLEYLNLNGN-QITDISP-LSNLVKLTNLYIGTNKITDIS-AL 106 (347)
T ss_dssp CHHHHTTCSEEECCSSC------C-CCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCCG-GG
T ss_pred cchhcccccEEEEeCCc------c-ccchh--hhhcCCccEEEccCC-ccccchh-hhcCCcCCEEEccCCcccCch-HH
Confidence 34466777887776643 1 22222 566788888888887 6777766 778888888888888887775 47
Q ss_pred cccccCcEEeeCCCccccccchhcccCCCccEEecCCCCCccccCCCCCCCCCCCccCCeEeCCCCCCCcccccCcccCC
Q 038637 659 NSLYNLHTILLENCWELKKLCKDMGNLTKLRHLRNSDAGLLEEMPKGFGKLTSLLTLGRFVVGKDSGSGLRELKSLTHLQ 738 (962)
Q Consensus 659 ~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~ 738 (962)
.++++|++|++++| .+..+|. +..+++|++|++++|.....++ .++.+++|++|.
T Consensus 107 ~~l~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~---------------------- 161 (347)
T 4fmz_A 107 QNLTNLRELYLNED-NISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLT---------------------- 161 (347)
T ss_dssp TTCTTCSEEECTTS-CCCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEE----------------------
T ss_pred cCCCcCCEEECcCC-cccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEE----------------------
Confidence 78888888888887 5666665 7788888888888876444433 355666665552
Q ss_pred CeEEEeccCCCCChhhhhhhcCcCCcCCCceEEeccCCCCCCccchhhHHhhhccCCCCCCcCeEEEeecCCCCCCcCcC
Q 038637 739 GTLRISKLENVEDVGDACEAQLNNKVNLRTLLLDWSARDVQNLDQCEFETRVLSMLKPHRDVQELTIRGYGGTKFPIWLG 818 (962)
Q Consensus 739 ~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~ 818 (962)
+.+..- ... ..+..+++|+.|+++++... . ...+..+++|+.|+++++.+...+. +
T Consensus 162 ----l~~~~~-~~~-----~~~~~l~~L~~L~l~~n~l~-----------~-~~~~~~l~~L~~L~l~~n~l~~~~~-~- 217 (347)
T 4fmz_A 162 ----VTESKV-KDV-----TPIANLTDLYSLSLNYNQIE-----------D-ISPLASLTSLHYFTAYVNQITDITP-V- 217 (347)
T ss_dssp ----CCSSCC-CCC-----GGGGGCTTCSEEECTTSCCC-----------C-CGGGGGCTTCCEEECCSSCCCCCGG-G-
T ss_pred ----ecCCCc-CCc-----hhhccCCCCCEEEccCCccc-----------c-cccccCCCccceeecccCCCCCCch-h-
Confidence 211110 000 01445566777777666521 0 1114556778888888887776655 3
Q ss_pred CCCCCCccEEEEeCCCCCCCCCCCCCCCCcCeEeecCCCCceEeCccccCCCCCCCCCCcceeeccccccccccccccCC
Q 038637 819 DSSFSKLVNLKFGYCRMCTSLPSVGQLPLLKHLKISGMDRVKSVGLEFYGSSCSVPFPSLETLSFSDMREWEEWISCGAG 898 (962)
Q Consensus 819 ~~~l~~L~~L~L~~~~~~~~l~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~ 898 (962)
..+++|++|++++|.+.. ++.+..+++|++|++++|. +..++ .+ ..+++|+.|++++| .+..+..
T Consensus 218 -~~~~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~n~-l~~~~-~~------~~l~~L~~L~l~~n-~l~~~~~---- 282 (347)
T 4fmz_A 218 -ANMTRLNSLKIGNNKITD-LSPLANLSQLTWLEIGTNQ-ISDIN-AV------KDLTKLKMLNVGSN-QISDISV---- 282 (347)
T ss_dssp -GGCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSC-CCCCG-GG------TTCTTCCEEECCSS-CCCCCGG----
T ss_pred -hcCCcCCEEEccCCccCC-CcchhcCCCCCEEECCCCc-cCCCh-hH------hcCCCcCEEEccCC-ccCCChh----
Confidence 267888888888887654 4447788888888888764 33331 12 22788888888875 4444321
Q ss_pred ccccCcCCccceEeEccCCCccccCC---CCCCCcceEEEccccCcc-ccCCCCCCcCEEecCCCC
Q 038637 899 QEVDEVFPKLRKLSLFNCYKLQGTLP---KRLLLLEKLVIKSCHRLL-VTIQCLPTLTELHTKLCR 960 (962)
Q Consensus 899 ~~~~~~~p~L~~L~l~~c~~L~~~lp---~~l~~L~~L~i~~c~~l~-~~l~~l~~L~~L~l~~C~ 960 (962)
...+++|+.|++++| .+++..| ..+++|+.|++++|+--. ..+..+++|++|++++|+
T Consensus 283 ---~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 283 ---LNNLSQLNSLFLNNN-QLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQV 344 (347)
T ss_dssp ---GGGCTTCSEEECCSS-CCCGGGHHHHHTCTTCSEEECCSSSCCCCGGGGGCTTCSEESSSCC-
T ss_pred ---hcCCCCCCEEECcCC-cCCCcChhHhhccccCCEEEccCCccccccChhhhhccceeehhhhc
Confidence 346788888888887 5653333 357888888888887221 236778899999998885
No 20
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.89 E-value=3.7e-22 Score=238.90 Aligned_cols=123 Identities=11% Similarity=0.110 Sum_probs=98.5
Q ss_pred CCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCcccc-cccccCCCcCCeEeccCCCCccc-ccccccc
Q 038637 584 EHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFNL-PNEIGNLKHLRCLNLSRTRIQIL-PESINSL 661 (962)
Q Consensus 584 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~l-p~~i~~L~~Lr~L~Ls~~~i~~l-p~~i~~L 661 (962)
++++.|.+.++. + ..++...|.++++|++|+|++| .+..+ |..|+++++|++|+|++|.+..+ |..++++
T Consensus 33 ~~l~~L~Ls~n~------i-~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 104 (606)
T 3t6q_A 33 NSTECLEFSFNV------L-PTIQNTTFSRLINLTFLDLTRC-QIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGP 104 (606)
T ss_dssp TTCCEEECTTCC------C-SEECTTTSTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSC
T ss_pred CcCcEEEccCCc------c-CcCChhHhccCccceEEECCCC-ccceeChhhccCccccCeeeCCCCcccccChhhhccc
Confidence 468888877753 2 2344556889999999999999 56555 78899999999999999999865 6789999
Q ss_pred ccCcEEeeCCCcccccc-chhcccCCCccEEecCCCCCcccc-CCCCCCCCCCCccC
Q 038637 662 YNLHTILLENCWELKKL-CKDMGNLTKLRHLRNSDAGLLEEM-PKGFGKLTSLLTLG 716 (962)
Q Consensus 662 ~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~-p~~i~~l~~L~~L~ 716 (962)
++|++|++++| .+..+ |..+.++++|++|++++|.. ..+ ++.+..+++|++|.
T Consensus 105 ~~L~~L~L~~n-~i~~l~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~ 159 (606)
T 3t6q_A 105 KALKHLFFIQT-GISSIDFIPLHNQKTLESLYLGSNHI-SSIKLPKGFPTEKLKVLD 159 (606)
T ss_dssp TTCCEEECTTS-CCSCGGGSCCTTCTTCCEEECCSSCC-CCCCCCTTCCCTTCCEEE
T ss_pred ccccEeecccc-CcccCCcchhccCCcccEEECCCCcc-cccCcccccCCcccCEEE
Confidence 99999999999 56655 67789999999999999984 443 23344488888874
No 21
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.89 E-value=8.8e-22 Score=243.70 Aligned_cols=361 Identities=17% Similarity=0.156 Sum_probs=219.2
Q ss_pred cCCceeEEEEEeeccccccccccccCCCCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCcccc-cccc
Q 038637 557 FSQTLRHFSYICREYDGKKRLESVCDVEHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFNL-PNEI 635 (962)
Q Consensus 557 ~~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~l-p~~i 635 (962)
.+..++++.+..+..... ....+.++++|+.|.+.++. ....++...|.++++|++|+|++| .+..+ |..|
T Consensus 22 lp~~l~~LdLs~N~i~~i-~~~~~~~l~~L~~LdLs~n~------~~~~i~~~~f~~L~~L~~L~Ls~N-~l~~~~p~~~ 93 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTV-TASSFPFLEQLQLLELGSQY------TPLTIDKEAFRNLPNLRILDLGSS-KIYFLHPDAF 93 (844)
T ss_dssp SCTTCCEEEEESCCCCEE-CSSSCSSCCSCSEEEECTTC------CCCEECTTTTSSCTTCCEEECTTC-CCCEECTTSS
T ss_pred CCCCcCEEECCCCcCCcc-ChhHCcccccCeEEeCCCCC------CccccCHHHhcCCCCCCEEECCCC-cCcccCHhHc
Confidence 556788888887654322 23457788999999887752 234555566889999999999999 56555 7889
Q ss_pred cCCCcCCeEeccCCCCcc-cccc--ccccccCcEEeeCCCcccccc--chhcccCCCccEEecCCCCCccccCCCCCCC-
Q 038637 636 GNLKHLRCLNLSRTRIQI-LPES--INSLYNLHTILLENCWELKKL--CKDMGNLTKLRHLRNSDAGLLEEMPKGFGKL- 709 (962)
Q Consensus 636 ~~L~~Lr~L~Ls~~~i~~-lp~~--i~~L~~L~~L~L~~~~~l~~l--p~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l- 709 (962)
+++.+|++|+|++|.+.. +|.. +++|++|++|++++| .+..+ +..+.++++|++|++++|......|..++.+
T Consensus 94 ~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~ 172 (844)
T 3j0a_A 94 QGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQ 172 (844)
T ss_dssp CSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHH
T ss_pred cCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCCcCCeeCHHHccccc
Confidence 999999999999999884 5654 889999999999998 44443 3568999999999999988555566666665
Q ss_pred -CCCCccCCeEeCCCCCCCcccccCcc------cCCCeEEEeccCCCCChhhhh--------------------------
Q 038637 710 -TSLLTLGRFVVGKDSGSGLRELKSLT------HLQGTLRISKLENVEDVGDAC-------------------------- 756 (962)
Q Consensus 710 -~~L~~L~~~~~~~~~~~~~~~l~~L~------~L~~~L~i~~l~~~~~~~~~~-------------------------- 756 (962)
++|+.|..... .........+..+. .|+ .|.+....-.......+
T Consensus 173 ~~~L~~L~L~~n-~l~~~~~~~~~~~~~~~~~~~L~-~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~ 250 (844)
T 3j0a_A 173 GKTLSFFSLAAN-SLYSRVSVDWGKCMNPFRNMVLE-ILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH 250 (844)
T ss_dssp HCSSCCCEECCS-BSCCCCCCCCCSSSCTTTTCCBS-EEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCS
T ss_pred CCccceEECCCC-ccccccccchhhcCCccccCcee-EEecCCCcCchhHHHHHHhhcCcccccceeccccccccccccc
Confidence 66666632211 11111111111111 133 34333221000000000
Q ss_pred ------hhcCcC--CcCCCceEEeccCCCCCCccchhhHHhhhccCCCCCCcCeEEEeecCCCCCC-cCcCCCCCCCccE
Q 038637 757 ------EAQLNN--KVNLRTLLLDWSARDVQNLDQCEFETRVLSMLKPHRDVQELTIRGYGGTKFP-IWLGDSSFSKLVN 827 (962)
Q Consensus 757 ------~~~l~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p-~~~~~~~l~~L~~ 827 (962)
...+.. ..+|+.|+++++.. ....+..+..+++|+.|++++|.+..++ ..+. .+++|++
T Consensus 251 ~l~~~~~~~f~~l~~~~L~~L~Ls~n~l----------~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~--~l~~L~~ 318 (844)
T 3j0a_A 251 NIKDPDQNTFAGLARSSVRHLDLSHGFV----------FSLNSRVFETLKDLKVLNLAYNKINKIADEAFY--GLDNLQV 318 (844)
T ss_dssp SSTTGGGTTTTTTTTSCCCEEECTTCCC----------CEECSCCSSSCCCCCEEEEESCCCCEECTTTTT--TCSSCCE
T ss_pred ccCCCChhhhhccccCCccEEECCCCcc----------cccChhhhhcCCCCCEEECCCCcCCCCChHHhc--CCCCCCE
Confidence 111111 14566666655541 1123445666778888888888776553 3443 6778888
Q ss_pred EEEeCCCCCCCCC-CCCCCCCcCeEeecCCCCceEeCccccCCCCCCCCCCcceeeccccccccccccccCCccccCcCC
Q 038637 828 LKFGYCRMCTSLP-SVGQLPLLKHLKISGMDRVKSVGLEFYGSSCSVPFPSLETLSFSDMREWEEWISCGAGQEVDEVFP 906 (962)
Q Consensus 828 L~L~~~~~~~~l~-~l~~lp~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p 906 (962)
|+|++|.+....| .++.+++|++|++++|. +..++..... .+++|+.|+++++. +..+ ..+|
T Consensus 319 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~-----~l~~L~~L~Ls~N~-l~~i----------~~~~ 381 (844)
T 3j0a_A 319 LNLSYNLLGELYSSNFYGLPKVAYIDLQKNH-IAIIQDQTFK-----FLEKLQTLDLRDNA-LTTI----------HFIP 381 (844)
T ss_dssp EEEESCCCSCCCSCSCSSCTTCCEEECCSCC-CCCCCSSCSC-----SCCCCCEEEEETCC-SCCC----------SSCC
T ss_pred EECCCCCCCccCHHHhcCCCCCCEEECCCCC-CCccChhhhc-----CCCCCCEEECCCCC-CCcc----------cCCC
Confidence 8888887765544 67778888888888764 4444332222 27788888887753 3322 1256
Q ss_pred ccceEeEccCCCccccCCC-------------------------CCCCcceEEEccccCc----cccCCCCCCcCEEecC
Q 038637 907 KLRKLSLFNCYKLQGTLPK-------------------------RLLLLEKLVIKSCHRL----LVTIQCLPTLTELHTK 957 (962)
Q Consensus 907 ~L~~L~l~~c~~L~~~lp~-------------------------~l~~L~~L~i~~c~~l----~~~l~~l~~L~~L~l~ 957 (962)
+|+.|++++| +++ .+|. .+++|+.|++++|.-- ...+..+++|+.|+++
T Consensus 382 ~L~~L~l~~N-~l~-~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls 459 (844)
T 3j0a_A 382 SIPDIFLSGN-KLV-TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLG 459 (844)
T ss_dssp SCSEEEEESC-CCC-CCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEE
T ss_pred CcchhccCCC-Ccc-cccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCC
Confidence 6666666665 454 4543 3455556665555421 0123345666666666
Q ss_pred CC
Q 038637 958 LC 959 (962)
Q Consensus 958 ~C 959 (962)
+|
T Consensus 460 ~N 461 (844)
T 3j0a_A 460 EN 461 (844)
T ss_dssp SC
T ss_pred CC
Confidence 65
No 22
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.89 E-value=1.2e-22 Score=240.11 Aligned_cols=149 Identities=16% Similarity=0.203 Sum_probs=117.0
Q ss_pred CCceeEEEEEeeccccccccccccCCCCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCcccccc-ccc
Q 038637 558 SQTLRHFSYICREYDGKKRLESVCDVEHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFNLPN-EIG 636 (962)
Q Consensus 558 ~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~lp~-~i~ 636 (962)
+..++++.+..+..... ....+.++++|++|.+.++. + ..++...|.++++|++|+|++| .+..+|. .++
T Consensus 25 ~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~------i-~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~ 95 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYI-GHGDLRACANLQVLILKSSR------I-NTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFG 95 (549)
T ss_dssp CTTCCEEECCSSCCCEE-CSSTTSSCTTCCEEECTTSC------C-CEECTTTTTTCTTCCEEECTTS-CCCSCCHHHHT
T ss_pred CCCccEEECcCCccCcc-ChhhhhcCCcccEEECCCCC------c-CccChhhccccccCCEEECCCC-ccCccCHHHhc
Confidence 45778888876643321 12457789999999888753 2 2344456788999999999999 6777764 599
Q ss_pred CCCcCCeEeccCCCCcc--ccccccccccCcEEeeCCCccccccc-hhcccCCCccEEecCCCCCccccCCCCCCCCCCC
Q 038637 637 NLKHLRCLNLSRTRIQI--LPESINSLYNLHTILLENCWELKKLC-KDMGNLTKLRHLRNSDAGLLEEMPKGFGKLTSLL 713 (962)
Q Consensus 637 ~L~~Lr~L~Ls~~~i~~--lp~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~ 713 (962)
++++|++|+|++|.++. .|..++++++|++|++++|..+..+| ..+..+++|++|++++|......|..++.+++|+
T Consensus 96 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 175 (549)
T 2z81_A 96 PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIH 175 (549)
T ss_dssp TCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEE
T ss_pred cCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCc
Confidence 99999999999999984 46789999999999999996577776 4789999999999999986666788888777766
Q ss_pred cc
Q 038637 714 TL 715 (962)
Q Consensus 714 ~L 715 (962)
+|
T Consensus 176 ~L 177 (549)
T 2z81_A 176 HL 177 (549)
T ss_dssp EE
T ss_pred eE
Confidence 65
No 23
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.89 E-value=4.2e-22 Score=233.60 Aligned_cols=369 Identities=15% Similarity=0.116 Sum_probs=218.9
Q ss_pred cCCceeEEEEEeeccccccccccccCCCCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCccccccccc
Q 038637 557 FSQTLRHFSYICREYDGKKRLESVCDVEHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFNLPNEIG 636 (962)
Q Consensus 557 ~~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~lp~~i~ 636 (962)
++..++++.+..+..... ....+..+++|++|.+.++. + ..++...|.++++|++|+|++| .+..+|..
T Consensus 19 ~~~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~------l-~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-- 87 (520)
T 2z7x_B 19 LSQKTTILNISQNYISEL-WTSDILSLSKLRILIISHNR------I-QYLDISVFKFNQELEYLDLSHN-KLVKISCH-- 87 (520)
T ss_dssp CCTTCSEEECCSSCCCCC-CHHHHTTCTTCCEEECCSSC------C-CEEEGGGGTTCTTCCEEECCSS-CCCEEECC--
T ss_pred ccccccEEECCCCccccc-ChhhccccccccEEecCCCc------c-CCcChHHhhcccCCCEEecCCC-ceeecCcc--
Confidence 346788898887654322 12357789999999988763 2 2344456889999999999999 78889876
Q ss_pred CCCcCCeEeccCCCCcc--ccccccccccCcEEeeCCCccccccchhcccCCCc--cEEecCCCCC--ccccCCCCCCCC
Q 038637 637 NLKHLRCLNLSRTRIQI--LPESINSLYNLHTILLENCWELKKLCKDMGNLTKL--RHLRNSDAGL--LEEMPKGFGKLT 710 (962)
Q Consensus 637 ~L~~Lr~L~Ls~~~i~~--lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L--~~L~l~~~~~--~~~~p~~i~~l~ 710 (962)
.+.+|++|+|++|.++. +|..++++++|++|++++| .+.. ..+..+++| ++|++++|.. ....|..++.++
T Consensus 88 ~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n-~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~ 164 (520)
T 2z7x_B 88 PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT-HLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFN 164 (520)
T ss_dssp CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEES-SCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCC
T ss_pred ccCCccEEeccCCccccccchhhhccCCcceEEEecCc-ccch--hhccccccceeeEEEeecccccccccccccccccc
Confidence 89999999999999985 6789999999999999999 4544 457788888 9999999885 455566555533
Q ss_pred --------------------------CCCccCCeEeCCCC-----CCCcccccCcccCCCeEEEeccCC-----------
Q 038637 711 --------------------------SLLTLGRFVVGKDS-----GSGLRELKSLTHLQGTLRISKLEN----------- 748 (962)
Q Consensus 711 --------------------------~L~~L~~~~~~~~~-----~~~~~~l~~L~~L~~~L~i~~l~~----------- 748 (962)
+|+.|......... ...+..+..++.|+ .|.+....-
T Consensus 165 ~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~l~~~~~~~~~~~ 243 (520)
T 2z7x_B 165 TESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLS-NLTLNNIETTWNSFIRILQL 243 (520)
T ss_dssp EEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCC-EEEEEEEEEEHHHHHHHHHH
T ss_pred cceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchh-hccccccccCHHHHHHHHHH
Confidence 33333221110000 00011223333333 333322100
Q ss_pred -----CC-------ChhhhhhhcC-----cCCcCCCceEEeccCCCCCCccchhhHHh---------------h--hccC
Q 038637 749 -----VE-------DVGDACEAQL-----NNKVNLRTLLLDWSARDVQNLDQCEFETR---------------V--LSML 794 (962)
Q Consensus 749 -----~~-------~~~~~~~~~l-----~~~~~L~~L~l~~~~~~~~~~~~~~~~~~---------------~--~~~l 794 (962)
+. ...+.++..+ ..+++|+.+++..+... +........ + ....
T Consensus 244 ~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~---~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 320 (520)
T 2z7x_B 244 VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG---FPQSYIYEIFSNMNIKNFTVSGTRMVHMLCP 320 (520)
T ss_dssp HHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCC---SCTHHHHHHHHTCCCSEEEEESSCCCCCCCC
T ss_pred hhhCcccEEEeecccccCccccchhhcccccCceeEecccccccee---cchhhhhcccccCceeEEEcCCCccccccch
Confidence 00 0000112222 33444444444443310 000000000 0 0001
Q ss_pred CCCCCcCeEEEeecCCCC-CCcCcCCCCCCCccEEEEeCCCCCC--CCC-CCCCCCCcCeEeecCCCCceEeCccccCCC
Q 038637 795 KPHRDVQELTIRGYGGTK-FPIWLGDSSFSKLVNLKFGYCRMCT--SLP-SVGQLPLLKHLKISGMDRVKSVGLEFYGSS 870 (962)
Q Consensus 795 ~~~~~L~~L~l~~~~~~~-~p~~~~~~~l~~L~~L~L~~~~~~~--~l~-~l~~lp~L~~L~L~~~~~~~~~~~~~~~~~ 870 (962)
..+++|+.|++++|.+.. .|.++. .+++|++|+|++|.+.+ .+| .++.+++|++|++++|.....++.....
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~-- 396 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCG--HLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS-- 396 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCC--CCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCC--
T ss_pred hhCCcccEEEeECCccChhhhhhhc--cCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhc--
Confidence 345666666666666554 455553 56667777777666553 233 3566677777777665433224433222
Q ss_pred CCCCCCCcceeeccccccccccccccCCccccCcCCccceEeEccCCCccccCCC---CCCCcceEEEcccc--Ccccc-
Q 038637 871 CSVPFPSLETLSFSDMREWEEWISCGAGQEVDEVFPKLRKLSLFNCYKLQGTLPK---RLLLLEKLVIKSCH--RLLVT- 944 (962)
Q Consensus 871 ~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~lp~---~l~~L~~L~i~~c~--~l~~~- 944 (962)
.+++|+.|+++++. +..... ....++|+.|++++| +++ .+|. .+++|+.|++++|. .++..
T Consensus 397 ---~l~~L~~L~Ls~N~-l~~~~~-------~~l~~~L~~L~Ls~N-~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~ 463 (520)
T 2z7x_B 397 ---WTKSLLSLNMSSNI-LTDTIF-------RCLPPRIKVLDLHSN-KIK-SIPKQVVKLEALQELNVASNQLKSVPDGI 463 (520)
T ss_dssp ---CCTTCCEEECCSSC-CCGGGG-------GSCCTTCCEEECCSS-CCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTT
T ss_pred ---cCccCCEEECcCCC-CCcchh-------hhhcccCCEEECCCC-ccc-ccchhhhcCCCCCEEECCCCcCCccCHHH
Confidence 16777777777753 221111 111268888888887 777 6774 46888888888876 33333
Q ss_pred CCCCCCcCEEecCCCC
Q 038637 945 IQCLPTLTELHTKLCR 960 (962)
Q Consensus 945 l~~l~~L~~L~l~~C~ 960 (962)
+..+++|+.|++++++
T Consensus 464 ~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 464 FDRLTSLQKIWLHTNP 479 (520)
T ss_dssp TTTCTTCCEEECCSSC
T ss_pred hccCCcccEEECcCCC
Confidence 6778889999998876
No 24
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.89 E-value=3.8e-22 Score=237.05 Aligned_cols=369 Identities=18% Similarity=0.156 Sum_probs=221.5
Q ss_pred cCCceeEEEEEeeccccccccccccCCCCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCccccc-ccc
Q 038637 557 FSQTLRHFSYICREYDGKKRLESVCDVEHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFNLP-NEI 635 (962)
Q Consensus 557 ~~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~lp-~~i 635 (962)
.+..++++.+..+..... ....+.++++|++|.+.++. + ..++...|.++++|++|+|++| .+..+| ..|
T Consensus 26 l~~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~------i-~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~ 96 (570)
T 2z63_A 26 LPFSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCE------I-QTIEDGAYQSLSHLSTLILTGN-PIQSLALGAF 96 (570)
T ss_dssp SCSSCCEEECCSCCCCEE-CTTTTTTCSSCCEEECTTCC------C-CEECTTTTTTCTTCCEEECTTC-CCCEECTTTT
T ss_pred ccccccEEEccCCccCcc-ChhHhhCCCCceEEECCCCc------C-CccCcccccCchhCCEEeCcCC-cCCccCHhhh
Confidence 456788888876643322 12357789999999888753 2 2355566888999999999999 576665 789
Q ss_pred cCCCcCCeEeccCCCCccccc-cccccccCcEEeeCCCcccc--ccchhcccCCCccEEecCCCCCccccCCCCCCCCCC
Q 038637 636 GNLKHLRCLNLSRTRIQILPE-SINSLYNLHTILLENCWELK--KLCKDMGNLTKLRHLRNSDAGLLEEMPKGFGKLTSL 712 (962)
Q Consensus 636 ~~L~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~--~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L 712 (962)
+++.+|++|++++|.++.+|. .++++++|++|++++| .+. .+|..+.++++|++|++++|......|..++.+++|
T Consensus 97 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 175 (570)
T 2z63_A 97 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (570)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTC
T ss_pred cCccccccccccccccccCCCccccccccccEEecCCC-ccceecChhhhcccCCCCEEeCcCCccceecHHHccchhcc
Confidence 999999999999999998876 6899999999999999 454 478899999999999999988444445566666666
Q ss_pred CccC-CeEeCCC--CCCCcccccCcccCCCeEEEecc---------------------------CCC-------------
Q 038637 713 LTLG-RFVVGKD--SGSGLRELKSLTHLQGTLRISKL---------------------------ENV------------- 749 (962)
Q Consensus 713 ~~L~-~~~~~~~--~~~~~~~l~~L~~L~~~L~i~~l---------------------------~~~------------- 749 (962)
..+. ....... .......+..+ .|+ .|.+... ...
T Consensus 176 ~~~~~~L~l~~n~l~~~~~~~~~~~-~L~-~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~ 253 (570)
T 2z63_A 176 PLLNLSLDLSLNPMNFIQPGAFKEI-RLH-KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEG 253 (570)
T ss_dssp TTCCCEEECTTCCCCEECTTTTTTC-EEE-EEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGG
T ss_pred chhhhhcccCCCCceecCHHHhccC-cce-eEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhcc
Confidence 2211 0111100 00000001111 121 2222110 000
Q ss_pred --------------CChhhhhhhcCcCCcCCCceEEeccCCCCCCccchhhHHhhhccCCCCCCcCeEEEeecCCCCCCc
Q 038637 750 --------------EDVGDACEAQLNNKVNLRTLLLDWSARDVQNLDQCEFETRVLSMLKPHRDVQELTIRGYGGTKFPI 815 (962)
Q Consensus 750 --------------~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~ 815 (962)
.......+..+..+++|+.|.+.++.. ..++..+..+ +|+.|+++++.+..+|.
T Consensus 254 l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l-----------~~l~~~~~~~-~L~~L~l~~n~~~~l~~ 321 (570)
T 2z63_A 254 LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI-----------ERVKDFSYNF-GWQHLELVNCKFGQFPT 321 (570)
T ss_dssp GGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEE-----------CSCCBCCSCC-CCSEEEEESCBCSSCCB
T ss_pred ccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccc-----------hhhhhhhccC-CccEEeeccCcccccCc
Confidence 001111223345556677777666541 1233444455 67777777776666665
Q ss_pred CcCCCCCCCccEEEEeCCCCCCCCCCCCCCCCcCeEeecCCCCceEe--CccccCC-----------------CCCCCCC
Q 038637 816 WLGDSSFSKLVNLKFGYCRMCTSLPSVGQLPLLKHLKISGMDRVKSV--GLEFYGS-----------------SCSVPFP 876 (962)
Q Consensus 816 ~~~~~~l~~L~~L~L~~~~~~~~l~~l~~lp~L~~L~L~~~~~~~~~--~~~~~~~-----------------~~~~~f~ 876 (962)
+ .+++|+.|++.+|......+. ..+|+|++|++++|...... +..+.+. .....++
T Consensus 322 ~----~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~ 396 (570)
T 2z63_A 322 L----KLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLE 396 (570)
T ss_dssp C----BCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCT
T ss_pred c----cccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccC
Confidence 2 355666666666655443333 45566666666654321110 1111110 0001155
Q ss_pred CcceeeccccccccccccccCCccccCcCCccceEeEccCCCccccCC---CCCCCcceEEEccccC----ccccCCCCC
Q 038637 877 SLETLSFSDMREWEEWISCGAGQEVDEVFPKLRKLSLFNCYKLQGTLP---KRLLLLEKLVIKSCHR----LLVTIQCLP 949 (962)
Q Consensus 877 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~lp---~~l~~L~~L~i~~c~~----l~~~l~~l~ 949 (962)
+|+.|+++++. +..... ......+++|+.|++++| .+.+..| ..+++|+.|++.+|.- ++..+..++
T Consensus 397 ~L~~L~l~~n~-l~~~~~----~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~ 470 (570)
T 2z63_A 397 QLEHLDFQHSN-LKQMSE----FSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 470 (570)
T ss_dssp TCCEEECTTSE-EESCTT----SCTTTTCTTCCEEECTTS-CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred CCCEEEccCCc-cccccc----hhhhhcCCCCCEEeCcCC-cccccchhhhhcCCcCcEEECcCCcCccccchhhhhccc
Confidence 66666666542 222111 112346788999999888 5664455 3578899999998863 445678889
Q ss_pred CcCEEecCCCC
Q 038637 950 TLTELHTKLCR 960 (962)
Q Consensus 950 ~L~~L~l~~C~ 960 (962)
+|+.|+|++|.
T Consensus 471 ~L~~L~l~~n~ 481 (570)
T 2z63_A 471 NLTFLDLSQCQ 481 (570)
T ss_dssp TCCEEECTTSC
T ss_pred CCCEEECCCCc
Confidence 99999999884
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.88 E-value=1e-21 Score=232.22 Aligned_cols=118 Identities=24% Similarity=0.263 Sum_probs=82.1
Q ss_pred CCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCcccc-cccccCCCcCCeEeccCCCCccccccccccc
Q 038637 584 EHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFNL-PNEIGNLKHLRCLNLSRTRIQILPESINSLY 662 (962)
Q Consensus 584 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~l-p~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~ 662 (962)
++++.|.+.++. + ..++...|.++++|++|+|++| .+..+ |..|+++++|++|+|++|.++.+|.. .++
T Consensus 52 ~~L~~L~Ls~N~------i-~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~ 121 (562)
T 3a79_B 52 PRTKALSLSQNS------I-SELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMA 121 (562)
T ss_dssp TTCCEEECCSSC------C-CCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCT
T ss_pred CCcCEEECCCCC------c-cccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccc
Confidence 677777776643 2 2344455777888888888888 56555 56788888888888888888888876 788
Q ss_pred cCcEEeeCCCcccccc--chhcccCCCccEEecCCCCCccccCCCCCCCCCC--Ccc
Q 038637 663 NLHTILLENCWELKKL--CKDMGNLTKLRHLRNSDAGLLEEMPKGFGKLTSL--LTL 715 (962)
Q Consensus 663 ~L~~L~L~~~~~l~~l--p~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L--~~L 715 (962)
+|++|++++| .+..+ |..+.++++|++|++++|.... ..++.+++| ++|
T Consensus 122 ~L~~L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L 174 (562)
T 3a79_B 122 SLRHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCI 174 (562)
T ss_dssp TCSEEECCSS-CCSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEEEE
T ss_pred cCCEEECCCC-CccccCchHhhcccCcccEEecCCCcccc---CchhhhhhceeeEE
Confidence 8888888888 45544 4678888888888888876322 234455555 554
No 26
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.88 E-value=6.5e-22 Score=235.06 Aligned_cols=366 Identities=19% Similarity=0.135 Sum_probs=227.3
Q ss_pred CceeEEEEEeeccccccccccccCCCCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCcccccc-cccC
Q 038637 559 QTLRHFSYICREYDGKKRLESVCDVEHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFNLPN-EIGN 637 (962)
Q Consensus 559 ~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~lp~-~i~~ 637 (962)
...+++.+..+..... ....+.++++|+.|.+.++. + ..++...|.++++|++|++++| .+..+|. .+++
T Consensus 52 ~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L~~n~------l-~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~ 122 (570)
T 2z63_A 52 PELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNP------I-QSLALGAFSGLSSLQKLVAVET-NLASLENFPIGH 122 (570)
T ss_dssp SSCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCC------C-CEECTTTTTTCTTCCEEECTTS-CCCCSTTCSCTT
T ss_pred CCceEEECCCCcCCcc-CcccccCchhCCEEeCcCCc------C-CccCHhhhcCcccccccccccc-ccccCCCccccc
Confidence 4567777665532221 12346778888888887653 1 2344455778888888888888 6777764 5888
Q ss_pred CCcCCeEeccCCCCcc--ccccccccccCcEEeeCCCccccccchhcccCCCc----cEEecCCCCCc------------
Q 038637 638 LKHLRCLNLSRTRIQI--LPESINSLYNLHTILLENCWELKKLCKDMGNLTKL----RHLRNSDAGLL------------ 699 (962)
Q Consensus 638 L~~Lr~L~Ls~~~i~~--lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L----~~L~l~~~~~~------------ 699 (962)
+.+|++|+|++|.+.. +|..++++++|++|++++|......|..+..+++| ++|++++|...
T Consensus 123 l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L 202 (570)
T 2z63_A 123 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRL 202 (570)
T ss_dssp CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEE
T ss_pred cccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcc
Confidence 8888888888888874 68888888888888888883323234455555555 55555544311
Q ss_pred ---------------------------------------------------------------------cccCCCCCCCC
Q 038637 700 ---------------------------------------------------------------------EEMPKGFGKLT 710 (962)
Q Consensus 700 ---------------------------------------------------------------------~~~p~~i~~l~ 710 (962)
...|..++.++
T Consensus 203 ~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~ 282 (570)
T 2z63_A 203 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT 282 (570)
T ss_dssp EEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGT
T ss_pred eeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcC
Confidence 11223344455
Q ss_pred CCCccCCeEeCCCCCCCcccccCcccCCCeEEEeccCCCCChhhh----------------hhhcCcCCcCCCceEEecc
Q 038637 711 SLLTLGRFVVGKDSGSGLRELKSLTHLQGTLRISKLENVEDVGDA----------------CEAQLNNKVNLRTLLLDWS 774 (962)
Q Consensus 711 ~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~----------------~~~~l~~~~~L~~L~l~~~ 774 (962)
+|++|......- . .....+..+ .|+ .|.+.+..-. ..... .......+++|+.|+++++
T Consensus 283 ~L~~L~l~~~~l-~-~l~~~~~~~-~L~-~L~l~~n~~~-~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n 357 (570)
T 2z63_A 283 NVSSFSLVSVTI-E-RVKDFSYNF-GWQ-HLELVNCKFG-QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRN 357 (570)
T ss_dssp TCSEEEEESCEE-C-SCCBCCSCC-CCS-EEEEESCBCS-SCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSS
T ss_pred cccEEEecCccc-h-hhhhhhccC-Ccc-EEeeccCccc-ccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCC
Confidence 666553211110 0 011112233 444 4444332211 00000 0000134556666666555
Q ss_pred CCCCCCccchhhHHhhhccCCCCCCcCeEEEeecCCCCCCcCcCCCCCCCccEEEEeCCCCCCCCC--CCCCCCCcCeEe
Q 038637 775 ARDVQNLDQCEFETRVLSMLKPHRDVQELTIRGYGGTKFPIWLGDSSFSKLVNLKFGYCRMCTSLP--SVGQLPLLKHLK 852 (962)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~--~l~~lp~L~~L~ 852 (962)
... .. ...+..+..+++|+.|++++|.+..+|..+. .+++|+.|++++|.+....| .+..+++|++|+
T Consensus 358 ~l~-----~~---~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 427 (570)
T 2z63_A 358 GLS-----FK---GCCSQSDFGTTSLKYLDLSFNGVITMSSNFL--GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLD 427 (570)
T ss_dssp CCB-----EE---EEEEHHHHTCSCCCEEECCSCSEEEEEEEEE--TCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEE
T ss_pred ccC-----cc---ccccccccccCccCEEECCCCcccccccccc--ccCCCCEEEccCCccccccchhhhhcCCCCCEEe
Confidence 411 00 0112334567889999999888777766553 78999999999998776555 678999999999
Q ss_pred ecCCCCceEeCccccCCCCCCCCCCcceeeccccccccccccccCCccccCcCCccceEeEccCCCccccCCC---CCCC
Q 038637 853 ISGMDRVKSVGLEFYGSSCSVPFPSLETLSFSDMREWEEWISCGAGQEVDEVFPKLRKLSLFNCYKLQGTLPK---RLLL 929 (962)
Q Consensus 853 L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~lp~---~l~~ 929 (962)
+++|......+..+.+ +++|+.|++++|.-.... . +.....+++|+.|++++| ++++..|. .+++
T Consensus 428 l~~n~l~~~~~~~~~~------l~~L~~L~l~~n~l~~~~-~----p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~ 495 (570)
T 2z63_A 428 ISHTHTRVAFNGIFNG------LSSLEVLKMAGNSFQENF-L----PDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSS 495 (570)
T ss_dssp CTTSCCEECCTTTTTT------CTTCCEEECTTCEEGGGE-E----CSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTT
T ss_pred CcCCcccccchhhhhc------CCcCcEEECcCCcCcccc-c----hhhhhcccCCCEEECCCC-ccccCChhhhhcccC
Confidence 9988644333333332 899999999997532111 1 123456899999999998 77755463 5689
Q ss_pred cceEEEccccC--c-cccCCCCCCcCEEecCCCC
Q 038637 930 LEKLVIKSCHR--L-LVTIQCLPTLTELHTKLCR 960 (962)
Q Consensus 930 L~~L~i~~c~~--l-~~~l~~l~~L~~L~l~~C~ 960 (962)
|+.|++++|.- + +..+.++++|+.|++++|+
T Consensus 496 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 496 LQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCc
Confidence 99999999862 2 2357789999999999975
No 27
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.88 E-value=2.3e-21 Score=223.22 Aligned_cols=125 Identities=17% Similarity=0.142 Sum_probs=61.4
Q ss_pred CCccEEEEeCCCCCCCCC-CCCCCCCcCeEeecCCCCceEeCccccCCCCCCCCCCcceeeccccccccccccccCCccc
Q 038637 823 SKLVNLKFGYCRMCTSLP-SVGQLPLLKHLKISGMDRVKSVGLEFYGSSCSVPFPSLETLSFSDMREWEEWISCGAGQEV 901 (962)
Q Consensus 823 ~~L~~L~L~~~~~~~~l~-~l~~lp~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~ 901 (962)
++|+.|++++|.+.+..| .++.+++|++|++++|......+..+.+ +++|+.|+++++ .+..+.. ..
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------l~~L~~L~Ls~N-~l~~~~~-----~~ 342 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG------LTHLLKLNLSQN-FLGSIDS-----RM 342 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT------CTTCCEEECCSS-CCCEECG-----GG
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcC------cccCCEEECCCC-ccCCcCh-----hH
Confidence 456666666665554444 4555666666666655422222222222 556666666654 2332211 11
Q ss_pred cCcCCccceEeEccCCCccccCC---CCCCCcceEEEcccc--Ccc-ccCCCCCCcCEEecCCCC
Q 038637 902 DEVFPKLRKLSLFNCYKLQGTLP---KRLLLLEKLVIKSCH--RLL-VTIQCLPTLTELHTKLCR 960 (962)
Q Consensus 902 ~~~~p~L~~L~l~~c~~L~~~lp---~~l~~L~~L~i~~c~--~l~-~~l~~l~~L~~L~l~~C~ 960 (962)
.+.+++|+.|++++| ++++..| ..+++|+.|++++|. .++ ..+..+++|+.|+|++++
T Consensus 343 ~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 343 FENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp GTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hcCcccCCEEECCCC-cccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCC
Confidence 234566666666665 4543323 234566666666554 111 123455666666666543
No 28
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.87 E-value=1.7e-21 Score=215.67 Aligned_cols=301 Identities=16% Similarity=0.199 Sum_probs=214.6
Q ss_pred CCceeEEEEEeeccccccccccccCCCCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCcccccccccC
Q 038637 558 SQTLRHFSYICREYDGKKRLESVCDVEHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFNLPNEIGN 637 (962)
Q Consensus 558 ~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~lp~~i~~ 637 (962)
...++++.+.+.... .++.+..+++|+.|.+.++. + ..++. +.++++|++|++++| .+..+| .+.+
T Consensus 43 l~~L~~L~l~~~~i~---~~~~~~~~~~L~~L~l~~n~------i-~~~~~--~~~l~~L~~L~L~~n-~i~~~~-~~~~ 108 (347)
T 4fmz_A 43 LESITKLVVAGEKVA---SIQGIEYLTNLEYLNLNGNQ------I-TDISP--LSNLVKLTNLYIGTN-KITDIS-ALQN 108 (347)
T ss_dssp HTTCSEEECCSSCCC---CCTTGGGCTTCCEEECCSSC------C-CCCGG--GTTCTTCCEEECCSS-CCCCCG-GGTT
T ss_pred cccccEEEEeCCccc---cchhhhhcCCccEEEccCCc------c-ccchh--hhcCCcCCEEEccCC-cccCch-HHcC
Confidence 356788888765433 34567789999999988753 2 23333 789999999999999 788776 5999
Q ss_pred CCcCCeEeccCCCCccccccccccccCcEEeeCCCccccccchhcccCCCccEEecCCCCCccccCCCCCCCCCCCccCC
Q 038637 638 LKHLRCLNLSRTRIQILPESINSLYNLHTILLENCWELKKLCKDMGNLTKLRHLRNSDAGLLEEMPKGFGKLTSLLTLGR 717 (962)
Q Consensus 638 L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~ 717 (962)
+++|++|++++|.+..+|. +..+++|++|++++|.....++. +..+++|++|++++|. +..++. ++.+++|++|..
T Consensus 109 l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~-~~~~~~-~~~l~~L~~L~l 184 (347)
T 4fmz_A 109 LTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESK-VKDVTP-IANLTDLYSLSL 184 (347)
T ss_dssp CTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEEC
T ss_pred CCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCC-cCCchh-hccCCCCCEEEc
Confidence 9999999999999999887 89999999999999966666554 9999999999999987 444443 666666666632
Q ss_pred eEeCCCCCCCcccccCcccCCCeEEEeccCCCCChhhhhhhcCcCCcCCCceEEeccCCCCCCccchhhHHhhhccCCCC
Q 038637 718 FVVGKDSGSGLRELKSLTHLQGTLRISKLENVEDVGDACEAQLNNKVNLRTLLLDWSARDVQNLDQCEFETRVLSMLKPH 797 (962)
Q Consensus 718 ~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 797 (962)
... .-..+. .+..+++|+.|.+.++... . ...+..+
T Consensus 185 ~~n---~l~~~~-----------------------------~~~~l~~L~~L~l~~n~l~-----~-------~~~~~~~ 220 (347)
T 4fmz_A 185 NYN---QIEDIS-----------------------------PLASLTSLHYFTAYVNQIT-----D-------ITPVANM 220 (347)
T ss_dssp TTS---CCCCCG-----------------------------GGGGCTTCCEEECCSSCCC-----C-------CGGGGGC
T ss_pred cCC---cccccc-----------------------------cccCCCccceeecccCCCC-----C-------CchhhcC
Confidence 110 000001 1344566777777665511 0 0114567
Q ss_pred CCcCeEEEeecCCCCCCcCcCCCCCCCccEEEEeCCCCCCCCCCCCCCCCcCeEeecCCCCceEeCccccCCCCCCCCCC
Q 038637 798 RDVQELTIRGYGGTKFPIWLGDSSFSKLVNLKFGYCRMCTSLPSVGQLPLLKHLKISGMDRVKSVGLEFYGSSCSVPFPS 877 (962)
Q Consensus 798 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~ 877 (962)
++|+.|++++|.+..+|. +. .+++|++|++++|.+.. ++.+..+++|++|++++|. +..++ .+. .+++
T Consensus 221 ~~L~~L~l~~n~l~~~~~-~~--~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~n~-l~~~~-~~~------~l~~ 288 (347)
T 4fmz_A 221 TRLNSLKIGNNKITDLSP-LA--NLSQLTWLEIGTNQISD-INAVKDLTKLKMLNVGSNQ-ISDIS-VLN------NLSQ 288 (347)
T ss_dssp TTCCEEECCSSCCCCCGG-GT--TCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSC-CCCCG-GGG------GCTT
T ss_pred CcCCEEEccCCccCCCcc-hh--cCCCCCEEECCCCccCC-ChhHhcCCCcCEEEccCCc-cCCCh-hhc------CCCC
Confidence 788899998888887776 43 78889999999887654 5778888999999998874 44332 122 2889
Q ss_pred cceeeccccccccccccccCCccccCcCCccceEeEccCCCccccCC-CCCCCcceEEEcccc
Q 038637 878 LETLSFSDMREWEEWISCGAGQEVDEVFPKLRKLSLFNCYKLQGTLP-KRLLLLEKLVIKSCH 939 (962)
Q Consensus 878 L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~lp-~~l~~L~~L~i~~c~ 939 (962)
|+.|++++|. +..... ...+.+|+|+.|++++| .+++..| ..+++|+.|++++|+
T Consensus 289 L~~L~L~~n~-l~~~~~-----~~l~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 289 LNSLFLNNNQ-LGNEDM-----EVIGGLTNLTTLFLSQN-HITDIRPLASLSKMDSADFANQV 344 (347)
T ss_dssp CSEEECCSSC-CCGGGH-----HHHHTCTTCSEEECCSS-SCCCCGGGGGCTTCSEESSSCC-
T ss_pred CCEEECcCCc-CCCcCh-----hHhhccccCCEEEccCC-ccccccChhhhhccceeehhhhc
Confidence 9999998864 333221 12345889999999998 5764334 568889999988875
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.87 E-value=1.9e-21 Score=222.16 Aligned_cols=301 Identities=19% Similarity=0.140 Sum_probs=199.7
Q ss_pred cccCCCCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCcccccccccCCCcCCeEeccCCCCccccccc
Q 038637 579 SVCDVEHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESI 658 (962)
Q Consensus 579 ~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i 658 (962)
.+.++++|+.|.+.++. +. .+| .+..+++|++|+|++| .+..+| ++.+++|++|+|++|.++.+| +
T Consensus 37 ~~~~l~~L~~L~Ls~n~------l~-~~~--~l~~l~~L~~L~Ls~n-~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~ 102 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSS------IT-DMT--GIEKLTGLTKLICTSN-NITTLD--LSQNTNLTYLACDSNKLTNLD--V 102 (457)
T ss_dssp EHHHHTTCCEEECCSSC------CC-CCT--TGGGCTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSSCCSCCC--C
T ss_pred ChhHcCCCCEEEccCCC------cc-cCh--hhcccCCCCEEEccCC-cCCeEc--cccCCCCCEEECcCCCCceee--c
Confidence 45677889999887753 22 234 3678899999999998 677776 889999999999999999886 8
Q ss_pred cccccCcEEeeCCCccccccchhcccCCCccEEecCCCCCccccCCCCCCCCCCCccCCeEeCCCCCCCcccccCcccCC
Q 038637 659 NSLYNLHTILLENCWELKKLCKDMGNLTKLRHLRNSDAGLLEEMPKGFGKLTSLLTLGRFVVGKDSGSGLRELKSLTHLQ 738 (962)
Q Consensus 659 ~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~ 738 (962)
+++++|++|++++| .+..+| +..+++|++|++++|. +..+| ++.+++|++|.......... + .+..+++|+
T Consensus 103 ~~l~~L~~L~L~~N-~l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~~--~-~~~~l~~L~ 173 (457)
T 3bz5_A 103 TPLTKLTYLNCDTN-KLTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKITK--L-DVTPQTQLT 173 (457)
T ss_dssp TTCTTCCEEECCSS-CCSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCCC--C-CCTTCTTCC
T ss_pred CCCCcCCEEECCCC-cCCeec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCcccc--c-ccccCCcCC
Confidence 89999999999998 666676 8899999999999987 45554 77788887774322211111 1 355666666
Q ss_pred CeEEEeccCCCCChhhhhhhcCcCCcCCCceEEeccCCCCCCccchhhHHhhhccCCCCCCcCeEEEeecCCCCCCcCcC
Q 038637 739 GTLRISKLENVEDVGDACEAQLNNKVNLRTLLLDWSARDVQNLDQCEFETRVLSMLKPHRDVQELTIRGYGGTKFPIWLG 818 (962)
Q Consensus 739 ~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~ 818 (962)
.|.+.... +.. + .+..+++|+.|.+.++... . + .+..+++|+.|++++|.+..+| +.
T Consensus 174 -~L~ls~n~-l~~----l--~l~~l~~L~~L~l~~N~l~-----~------~--~l~~l~~L~~L~Ls~N~l~~ip--~~ 230 (457)
T 3bz5_A 174 -TLDCSFNK-ITE----L--DVSQNKLLNRLNCDTNNIT-----K------L--DLNQNIQLTFLDCSSNKLTEID--VT 230 (457)
T ss_dssp -EEECCSSC-CCC----C--CCTTCTTCCEEECCSSCCS-----C------C--CCTTCTTCSEEECCSSCCSCCC--CT
T ss_pred -EEECCCCc-cce----e--ccccCCCCCEEECcCCcCC-----e------e--ccccCCCCCEEECcCCcccccC--cc
Confidence 66665432 111 1 1567778888888777621 1 1 2667788888888888888777 32
Q ss_pred CCCCCCccEEEEeCCCCCCCCCCCCCCCCcCeEee----------cCCCCceEeCccccCCCCCCCCCCcceeecccccc
Q 038637 819 DSSFSKLVNLKFGYCRMCTSLPSVGQLPLLKHLKI----------SGMDRVKSVGLEFYGSSCSVPFPSLETLSFSDMRE 888 (962)
Q Consensus 819 ~~~l~~L~~L~L~~~~~~~~l~~l~~lp~L~~L~L----------~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~ 888 (962)
.+++|+.|++++|.+.+. | ++.+++|+.|++ ++|.....++. ..+++|+.|++++|..
T Consensus 231 --~l~~L~~L~l~~N~l~~~-~-~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~--------~~l~~L~~L~Ls~n~~ 298 (457)
T 3bz5_A 231 --PLTQLTYFDCSVNPLTEL-D-VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQA--------EGCRKIKELDVTHNTQ 298 (457)
T ss_dssp --TCTTCSEEECCSSCCSCC-C-CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEEC--------TTCTTCCCCCCTTCTT
T ss_pred --ccCCCCEEEeeCCcCCCc-C-HHHCCCCCEEeccCCCCCEEECCCCccCCcccc--------cccccCCEEECCCCcc
Confidence 678888888888877653 3 344555554444 44433333321 1267888888888776
Q ss_pred ccccccccCCc--cccCcCCccceEeEccCCCccccCC-CCCCCcceEEEcccc
Q 038637 889 WEEWISCGAGQ--EVDEVFPKLRKLSLFNCYKLQGTLP-KRLLLLEKLVIKSCH 939 (962)
Q Consensus 889 l~~~~~~~~~~--~~~~~~p~L~~L~l~~c~~L~~~lp-~~l~~L~~L~i~~c~ 939 (962)
+..++...... -....+|+|+.|++++| ++++ ++ ..+++|+.|+++++.
T Consensus 299 l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~-l~l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 299 LYLLDCQAAGITELDLSQNPKLVYLYLNNT-ELTE-LDVSHNTKLKSLSCVNAH 350 (457)
T ss_dssp CCEEECTTCCCSCCCCTTCTTCCEEECTTC-CCSC-CCCTTCTTCSEEECCSSC
T ss_pred cceeccCCCcceEechhhcccCCEEECCCC-cccc-cccccCCcCcEEECCCCC
Confidence 66554311100 01334567777777775 6663 44 456777777776653
No 30
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.87 E-value=1.2e-21 Score=231.44 Aligned_cols=150 Identities=22% Similarity=0.231 Sum_probs=113.1
Q ss_pred CCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCccccc-ccccCCCcCCeEeccCCCCcccccc-cccc
Q 038637 584 EHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFNLP-NEIGNLKHLRCLNLSRTRIQILPES-INSL 661 (962)
Q Consensus 584 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~lp-~~i~~L~~Lr~L~Ls~~~i~~lp~~-i~~L 661 (962)
+++++|.+.++. +. .++...|.++++|++|+|++| .+..++ ..|+++++|++|+|++|.++.+|.. ++++
T Consensus 26 ~~L~~L~Ls~n~------l~-~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 97 (549)
T 2z81_A 26 AAMKSLDLSFNK------IT-YIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPL 97 (549)
T ss_dssp TTCCEEECCSSC------CC-EECSSTTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTC
T ss_pred CCccEEECcCCc------cC-ccChhhhhcCCcccEEECCCC-CcCccChhhccccccCCEEECCCCccCccCHHHhccC
Confidence 688999887753 22 233345789999999999999 566665 7899999999999999999988775 9999
Q ss_pred ccCcEEeeCCCcccc--ccchhcccCCCccEEecCCCCCccccC-CCCCCCCCCCccCCeEeCCCCCCCcccccCcccCC
Q 038637 662 YNLHTILLENCWELK--KLCKDMGNLTKLRHLRNSDAGLLEEMP-KGFGKLTSLLTLGRFVVGKDSGSGLRELKSLTHLQ 738 (962)
Q Consensus 662 ~~L~~L~L~~~~~l~--~lp~~i~~L~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~ 738 (962)
++|++|++++| .+. ..|..+.++++|++|++++|.....+| ..++.+++|++|..... ...+.....+.++++|+
T Consensus 98 ~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~ 175 (549)
T 2z81_A 98 SSLKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL-SLRNYQSQSLKSIRDIH 175 (549)
T ss_dssp TTCCEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET-TCCEECTTTTTTCSEEE
T ss_pred CCCcEEECCCC-cccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCC-cccccChhhhhccccCc
Confidence 99999999999 555 456789999999999999998666776 47899999998854332 22222233444555554
Q ss_pred CeEEEe
Q 038637 739 GTLRIS 744 (962)
Q Consensus 739 ~~L~i~ 744 (962)
.|.+.
T Consensus 176 -~L~l~ 180 (549)
T 2z81_A 176 -HLTLH 180 (549)
T ss_dssp -EEEEE
T ss_pred -eEecc
Confidence 45444
No 31
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.86 E-value=8.1e-21 Score=224.55 Aligned_cols=352 Identities=14% Similarity=0.109 Sum_probs=227.8
Q ss_pred cCCceeEEEEEeeccccccccccccCCCCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCccccccccc
Q 038637 557 FSQTLRHFSYICREYDGKKRLESVCDVEHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFNLPNEIG 636 (962)
Q Consensus 557 ~~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~lp~~i~ 636 (962)
.+..++.+.+..+..... ....+.++++|+.|.+.++. + ..++...|.++++|++|+|++| .+..+|..
T Consensus 50 ~~~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~------l-~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-- 118 (562)
T 3a79_B 50 LPPRTKALSLSQNSISEL-RMPDISFLSELRVLRLSHNR------I-RSLDFHVFLFNQDLEYLDVSHN-RLQNISCC-- 118 (562)
T ss_dssp SCTTCCEEECCSSCCCCC-CGGGTTTCTTCCEEECCSCC------C-CEECTTTTTTCTTCCEEECTTS-CCCEECSC--
T ss_pred CCCCcCEEECCCCCcccc-ChhhhccCCCccEEECCCCC------C-CcCCHHHhCCCCCCCEEECCCC-cCCccCcc--
Confidence 346788888877654322 12467889999999988753 2 2344456889999999999999 78899976
Q ss_pred CCCcCCeEeccCCCCcccc--ccccccccCcEEeeCCCccccccchhcccCCCc--cEEecCCCCC--ccccCCCCCCCC
Q 038637 637 NLKHLRCLNLSRTRIQILP--ESINSLYNLHTILLENCWELKKLCKDMGNLTKL--RHLRNSDAGL--LEEMPKGFGKLT 710 (962)
Q Consensus 637 ~L~~Lr~L~Ls~~~i~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L--~~L~l~~~~~--~~~~p~~i~~l~ 710 (962)
.+.+|++|+|++|.++.+| ..++++++|++|++++| .+.. ..+..+++| ++|++++|.. ....|..+..+.
T Consensus 119 ~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n-~l~~--~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~ 195 (562)
T 3a79_B 119 PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA-KFRQ--LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPN 195 (562)
T ss_dssp CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECS-BCCT--TTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECC
T ss_pred ccccCCEEECCCCCccccCchHhhcccCcccEEecCCC-cccc--CchhhhhhceeeEEEeecccccccccCcccccccC
Confidence 8999999999999999765 78999999999999998 4443 345666666 9999999875 444555554433
Q ss_pred --------------------------CCCccCCeEeCCCC------CCCcccccCcc-----------------------
Q 038637 711 --------------------------SLLTLGRFVVGKDS------GSGLRELKSLT----------------------- 735 (962)
Q Consensus 711 --------------------------~L~~L~~~~~~~~~------~~~~~~l~~L~----------------------- 735 (962)
+|+.|. ..... ...+..+..++
T Consensus 196 ~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~---l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~ 272 (562)
T 3a79_B 196 TTVLHLVFHPNSLFSVQVNMSVNALGHLQLSN---IKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF 272 (562)
T ss_dssp EEEEEEEECSSSCCCCCCEEEESSEEEEEEEE---EECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH
T ss_pred cceEEEEecCccchhhhhhhcccccceEEEec---ccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHh
Confidence 222221 10000 00000000011
Q ss_pred ----cCCCeEEEeccCCCCChhhhhhhcC-----cCCc--------------------------CCCceEEeccCCCCCC
Q 038637 736 ----HLQGTLRISKLENVEDVGDACEAQL-----NNKV--------------------------NLRTLLLDWSARDVQN 780 (962)
Q Consensus 736 ----~L~~~L~i~~l~~~~~~~~~~~~~l-----~~~~--------------------------~L~~L~l~~~~~~~~~ 780 (962)
+|+ .|.+.+..- ...++..+ .+++ +|+.|.+..+...
T Consensus 273 ~~~~~L~-~L~l~~n~l----~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~--- 344 (562)
T 3a79_B 273 FWPRPVE-YLNIYNLTI----TERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFI--- 344 (562)
T ss_dssp HTTSSEE-EEEEEEEEE----CSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCC---
T ss_pred hhccccc-EEEEeccEe----eccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcc---
Confidence 222 333322110 00111111 2222 3444444443310
Q ss_pred ccchhhHHhhhccCCCCCCcCeEEEeecCCCC-CCcCcCCCCCCCccEEEEeCCCCCC--CCC-CCCCCCCcCeEeecCC
Q 038637 781 LDQCEFETRVLSMLKPHRDVQELTIRGYGGTK-FPIWLGDSSFSKLVNLKFGYCRMCT--SLP-SVGQLPLLKHLKISGM 856 (962)
Q Consensus 781 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~p~~~~~~~l~~L~~L~L~~~~~~~--~l~-~l~~lp~L~~L~L~~~ 856 (962)
.......+++|+.|++++|.+.. .|.++. .+++|+.|+|++|.+.. .+| .++.+++|++|++++|
T Consensus 345 ---------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N 413 (562)
T 3a79_B 345 ---------HMVCPPSPSSFTFLNFTQNVFTDSVFQGCS--TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLN 413 (562)
T ss_dssp ---------CCCCCSSCCCCCEEECCSSCCCTTTTTTCC--SCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTS
T ss_pred ---------cccCccCCCCceEEECCCCccccchhhhhc--ccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCC
Confidence 00011567889999999988775 566664 78899999999988764 223 5788999999999987
Q ss_pred CCceEeCccccCCCCCCCCCCcceeeccccccccccccccCCccccCcC-CccceEeEccCCCccccCCC---CCCCcce
Q 038637 857 DRVKSVGLEFYGSSCSVPFPSLETLSFSDMREWEEWISCGAGQEVDEVF-PKLRKLSLFNCYKLQGTLPK---RLLLLEK 932 (962)
Q Consensus 857 ~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~-p~L~~L~l~~c~~L~~~lp~---~l~~L~~ 932 (962)
.....++...... +++|+.|+++++. +.... ...+ ++|+.|++++| +++ .+|. .+++|+.
T Consensus 414 ~l~~~~~~~~~~~-----l~~L~~L~l~~n~-l~~~~--------~~~l~~~L~~L~L~~N-~l~-~ip~~~~~l~~L~~ 477 (562)
T 3a79_B 414 SLNSHAYDRTCAW-----AESILVLNLSSNM-LTGSV--------FRCLPPKVKVLDLHNN-RIM-SIPKDVTHLQALQE 477 (562)
T ss_dssp CCBSCCSSCCCCC-----CTTCCEEECCSSC-CCGGG--------GSSCCTTCSEEECCSS-CCC-CCCTTTTSSCCCSE
T ss_pred cCCCccChhhhcC-----cccCCEEECCCCC-CCcch--------hhhhcCcCCEEECCCC-cCc-ccChhhcCCCCCCE
Confidence 6443355443322 7899999999864 33221 1123 69999999998 888 7884 4689999
Q ss_pred EEEcccc--Ccccc-CCCCCCcCEEecCCCC
Q 038637 933 LVIKSCH--RLLVT-IQCLPTLTELHTKLCR 960 (962)
Q Consensus 933 L~i~~c~--~l~~~-l~~l~~L~~L~l~~C~ 960 (962)
|++++|. .++.. +..+++|+.|+++++|
T Consensus 478 L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 478 LNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp EECCSSCCCCCCTTSTTTCTTCCCEECCSCC
T ss_pred EECCCCCCCCCCHHHHhcCCCCCEEEecCCC
Confidence 9999886 33433 7788999999999876
No 32
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.86 E-value=9.9e-21 Score=234.26 Aligned_cols=349 Identities=17% Similarity=0.172 Sum_probs=237.9
Q ss_pred CCCCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCcccc-cccccCCCcCCeEeccCCCCccc-ccccc
Q 038637 582 DVEHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFNL-PNEIGNLKHLRCLNLSRTRIQIL-PESIN 659 (962)
Q Consensus 582 ~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~l-p~~i~~L~~Lr~L~Ls~~~i~~l-p~~i~ 659 (962)
..++++.|.+.++. +. .++...|.++++|++|+|++|..+..+ |..|+++++|++|+|++|.+..+ |..++
T Consensus 22 lp~~l~~LdLs~N~------i~-~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~ 94 (844)
T 3j0a_A 22 VLNTTERLLLSFNY------IR-TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQ 94 (844)
T ss_dssp SCTTCCEEEEESCC------CC-EECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSC
T ss_pred CCCCcCEEECCCCc------CC-ccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHcc
Confidence 44788998887653 22 233445789999999999999666677 68899999999999999999966 78999
Q ss_pred ccccCcEEeeCCCccccccchh--cccCCCccEEecCCCCCccccC-CCCCCCCCCCccCCeEeCCCCCCCcccccCc--
Q 038637 660 SLYNLHTILLENCWELKKLCKD--MGNLTKLRHLRNSDAGLLEEMP-KGFGKLTSLLTLGRFVVGKDSGSGLRELKSL-- 734 (962)
Q Consensus 660 ~L~~L~~L~L~~~~~l~~lp~~--i~~L~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L-- 734 (962)
++++|++|+|++|.....+|.. +.++++|++|++++|......| ..++++++|++|... .+.........+..+
T Consensus 95 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls-~N~i~~~~~~~l~~l~~ 173 (844)
T 3j0a_A 95 GLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS-SNQIFLVCEHELEPLQG 173 (844)
T ss_dssp SCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEE-SSCCCCCCSGGGHHHHH
T ss_pred CCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECC-CCcCCeeCHHHcccccC
Confidence 9999999999999544446665 8999999999999998444333 468999999998432 222233333444444
Q ss_pred ccCCCeEEEeccCCCCChhhhhhhcCcCCc------CCCceEEeccCCCCCCcc--------------------------
Q 038637 735 THLQGTLRISKLENVEDVGDACEAQLNNKV------NLRTLLLDWSARDVQNLD-------------------------- 782 (962)
Q Consensus 735 ~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~------~L~~L~l~~~~~~~~~~~-------------------------- 782 (962)
++|+ .|.+....-.. ..+..+..+. .|+.|+++++........
T Consensus 174 ~~L~-~L~L~~n~l~~----~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~ 248 (844)
T 3j0a_A 174 KTLS-FFSLAANSLYS----RVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFG 248 (844)
T ss_dssp CSSC-CCEECCSBSCC----CCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSS
T ss_pred Cccc-eEECCCCcccc----ccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccc
Confidence 5565 66665432111 1111222222 488888877642100000
Q ss_pred chhhHHhhhccCCC--CCCcCeEEEeecCCCCC-CcCcCCCCCCCccEEEEeCCCCCCCCC-CCCCCCCcCeEeecCCCC
Q 038637 783 QCEFETRVLSMLKP--HRDVQELTIRGYGGTKF-PIWLGDSSFSKLVNLKFGYCRMCTSLP-SVGQLPLLKHLKISGMDR 858 (962)
Q Consensus 783 ~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L~~L~L~~~~~ 858 (962)
...........+.. +++|+.|++++|.+..+ |.++. .+++|+.|+|++|.+....| .++.+++|++|+|++|..
T Consensus 249 ~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l 326 (844)
T 3j0a_A 249 FHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE--TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL 326 (844)
T ss_dssp CSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSS--SCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCC
T ss_pred ccccCCCChhhhhccccCCccEEECCCCcccccChhhhh--cCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCC
Confidence 00000011111222 37899999999987765 44443 78999999999999886655 688999999999999754
Q ss_pred ceEeCccccCCCCCCCCCCcceeeccccccccccccccCCccccCcCCccceEeEccCCCccccCCCCCCCcceEEEccc
Q 038637 859 VKSVGLEFYGSSCSVPFPSLETLSFSDMREWEEWISCGAGQEVDEVFPKLRKLSLFNCYKLQGTLPKRLLLLEKLVIKSC 938 (962)
Q Consensus 859 ~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~lp~~l~~L~~L~i~~c 938 (962)
....+..+.+ +++|+.|+++++ .+..+.. .....+++|+.|++++| .++ .++. +++|+.|.+.+|
T Consensus 327 ~~~~~~~~~~------l~~L~~L~L~~N-~i~~~~~-----~~~~~l~~L~~L~Ls~N-~l~-~i~~-~~~L~~L~l~~N 391 (844)
T 3j0a_A 327 GELYSSNFYG------LPKVAYIDLQKN-HIAIIQD-----QTFKFLEKLQTLDLRDN-ALT-TIHF-IPSIPDIFLSGN 391 (844)
T ss_dssp SCCCSCSCSS------CTTCCEEECCSC-CCCCCCS-----SCSCSCCCCCEEEEETC-CSC-CCSS-CCSCSEEEEESC
T ss_pred CccCHHHhcC------CCCCCEEECCCC-CCCccCh-----hhhcCCCCCCEEECCCC-CCC-cccC-CCCcchhccCCC
Confidence 3332333333 899999999986 4544422 22456899999999998 777 5665 788999998877
Q ss_pred cCc--cc----------------------cCCCCCCcCEEecCCCC
Q 038637 939 HRL--LV----------------------TIQCLPTLTELHTKLCR 960 (962)
Q Consensus 939 ~~l--~~----------------------~l~~l~~L~~L~l~~C~ 960 (962)
.-. +. .+.++|+|+.|+|++|.
T Consensus 392 ~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~ 437 (844)
T 3j0a_A 392 KLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNR 437 (844)
T ss_dssp CCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCC
T ss_pred CcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCc
Confidence 521 11 12367889999988764
No 33
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.86 E-value=4.6e-21 Score=232.63 Aligned_cols=149 Identities=16% Similarity=0.118 Sum_probs=104.6
Q ss_pred cCCceeEEEEEeeccccccccccccCCCCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCcccccc-cc
Q 038637 557 FSQTLRHFSYICREYDGKKRLESVCDVEHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFNLPN-EI 635 (962)
Q Consensus 557 ~~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~lp~-~i 635 (962)
.+..++++.+..+..... ....+.++++|++|.+.++. + ..++...+.++++|++|+|++| .+..+|. .|
T Consensus 23 ~~~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~------l-~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~ 93 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNT------I-SKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTF 93 (680)
T ss_dssp SCTTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSC------C-CCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTT
T ss_pred cCCCCcEEECCCCCCCCc-CHHHHhCCCcCcEEECCCCc------c-CccCHHHHhcccCcCEEECCCC-ccCccChhhh
Confidence 446788888876643322 12346778889998887643 2 2334455778888999999888 6777775 58
Q ss_pred cCCCcCCeEeccCCCCcccc-ccccccccCcEEeeCCCccccccchhcccCCCccEEecCCCCCccccCC-CC--CCCCC
Q 038637 636 GNLKHLRCLNLSRTRIQILP-ESINSLYNLHTILLENCWELKKLCKDMGNLTKLRHLRNSDAGLLEEMPK-GF--GKLTS 711 (962)
Q Consensus 636 ~~L~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~-~i--~~l~~ 711 (962)
+++.+|++|+|++|.+..+| ..++++++|++|++++|......|..+.++++|++|++++|.. ..++. .+ ..+++
T Consensus 94 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~~~~~~ 172 (680)
T 1ziw_A 94 AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI-QALKSEELDIFANSS 172 (680)
T ss_dssp TTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCC-CCBCHHHHGGGTTCE
T ss_pred ccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcc-cccCHHHhhcccccc
Confidence 88899999999988888776 4688889999999988854444566678888888888888873 33332 22 23456
Q ss_pred CCcc
Q 038637 712 LLTL 715 (962)
Q Consensus 712 L~~L 715 (962)
|++|
T Consensus 173 L~~L 176 (680)
T 1ziw_A 173 LKKL 176 (680)
T ss_dssp ESEE
T ss_pred ccEE
Confidence 6665
No 34
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.86 E-value=4.8e-21 Score=220.61 Aligned_cols=353 Identities=14% Similarity=0.132 Sum_probs=207.8
Q ss_pred cCCceeEEEEEeeccccccccccccCCCCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCcccc-cccc
Q 038637 557 FSQTLRHFSYICREYDGKKRLESVCDVEHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFNL-PNEI 635 (962)
Q Consensus 557 ~~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~l-p~~i 635 (962)
.+..++++.+..+..... ....+.++++|+.|.+.++. +...++...|.++++|++|+|++| .+..+ |..+
T Consensus 28 l~~~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~------~~~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~ 99 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAEL-NETSFSRLQDLQFLKVEQQT------PGLVIRNNTFRGLSSLIILKLDYN-QFLQLETGAF 99 (455)
T ss_dssp CCTTCCEEECCSSCCCEE-CTTTTSSCTTCCEEECCCCS------TTCEECTTTTTTCTTCCEEECTTC-TTCEECTTTT
T ss_pred CCCccCEEEecCCccCcC-ChhHhccCccccEEECcCCc------ccceECcccccccccCCEEeCCCC-ccCccChhhc
Confidence 345667777665533221 12345677777777776642 223444555677777888888777 44444 6677
Q ss_pred cCCCcCCeEeccCCCCcc-cccc--ccccccCcEEeeCCCcccccc-chh-cccCCCccEEecCCCCCccccCCCCCCC-
Q 038637 636 GNLKHLRCLNLSRTRIQI-LPES--INSLYNLHTILLENCWELKKL-CKD-MGNLTKLRHLRNSDAGLLEEMPKGFGKL- 709 (962)
Q Consensus 636 ~~L~~Lr~L~Ls~~~i~~-lp~~--i~~L~~L~~L~L~~~~~l~~l-p~~-i~~L~~L~~L~l~~~~~~~~~p~~i~~l- 709 (962)
+++++|++|+|++|.++. .|.. +.++++|++|++++| .+..+ |.. +.++++|++|++++|......|..++.+
T Consensus 100 ~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~ 178 (455)
T 3v47_A 100 NGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQ 178 (455)
T ss_dssp TTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGT
T ss_pred cCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCCCCcccccChhhhhccc
Confidence 777778888887777763 3444 777777888888777 34433 544 6777778888877777444445555544
Q ss_pred -CCCCccCCeEeC--CCCCCCc-----ccccCcccCCCeEEEeccCCCCChhhhhhhcC---cCCcCCCceEEeccCCCC
Q 038637 710 -TSLLTLGRFVVG--KDSGSGL-----RELKSLTHLQGTLRISKLENVEDVGDACEAQL---NNKVNLRTLLLDWSARDV 778 (962)
Q Consensus 710 -~~L~~L~~~~~~--~~~~~~~-----~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l---~~~~~L~~L~l~~~~~~~ 778 (962)
.+|+.|...... ......+ ..+..++.|+ .|.+.+..- ....+..+ ....+|+.|.+..+....
T Consensus 179 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~-~L~Ls~n~l----~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 253 (455)
T 3v47_A 179 GKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSIT-TLDLSGNGF----KESMAKRFFDAIAGTKIQSLILSNSYNMG 253 (455)
T ss_dssp TCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEE-EEECTTSCC----CHHHHHHHHHHTTTCCEEEEECTTCTTTS
T ss_pred cccccccccccCcccccchhhccccccccccccceee-eEecCCCcc----cccchhhhhccccccceeeEeeccccccc
Confidence 333333111000 0000000 0111223333 444332211 11111111 122566666666543110
Q ss_pred CCccchhhHHhhhccC--CCCCCcCeEEEeecCCCCC-CcCcCCCCCCCccEEEEeCCCCCCCCC-CCCCCCCcCeEeec
Q 038637 779 QNLDQCEFETRVLSML--KPHRDVQELTIRGYGGTKF-PIWLGDSSFSKLVNLKFGYCRMCTSLP-SVGQLPLLKHLKIS 854 (962)
Q Consensus 779 ~~~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L~~L~L~ 854 (962)
...............+ ..+++|+.|++++|.+... |.++. .+++|+.|+|++|.+.+..| .++.+++|++|+++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 331 (455)
T 3v47_A 254 SSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFS--HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLS 331 (455)
T ss_dssp CCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTT--TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred cccchhhhccCcccccccccccCceEEEecCccccccchhhcc--cCCCCCEEECCCCcccccChhHhcCcccCCEEECC
Confidence 0000000000000001 1236899999999987754 55664 78999999999999887666 78899999999999
Q ss_pred CCCCceEeCccccCCCCCCCCCCcceeeccccccccccccccCCccccCcCCccceEeEccCCCccccCC----CCCCCc
Q 038637 855 GMDRVKSVGLEFYGSSCSVPFPSLETLSFSDMREWEEWISCGAGQEVDEVFPKLRKLSLFNCYKLQGTLP----KRLLLL 930 (962)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~lp----~~l~~L 930 (962)
+|. +..++....+. +++|+.|+++++ .+..+.. .....+++|+.|++++| +++ .+| ..+++|
T Consensus 332 ~N~-l~~~~~~~~~~-----l~~L~~L~Ls~N-~l~~~~~-----~~~~~l~~L~~L~L~~N-~l~-~~~~~~~~~l~~L 397 (455)
T 3v47_A 332 QNF-LGSIDSRMFEN-----LDKLEVLDLSYN-HIRALGD-----QSFLGLPNLKELALDTN-QLK-SVPDGIFDRLTSL 397 (455)
T ss_dssp SSC-CCEECGGGGTT-----CTTCCEEECCSS-CCCEECT-----TTTTTCTTCCEEECCSS-CCS-CCCTTTTTTCTTC
T ss_pred CCc-cCCcChhHhcC-----cccCCEEECCCC-cccccCh-----hhccccccccEEECCCC-ccc-cCCHhHhccCCcc
Confidence 875 45554333222 899999999996 3444422 23456899999999997 788 465 357899
Q ss_pred ceEEEcccc
Q 038637 931 EKLVIKSCH 939 (962)
Q Consensus 931 ~~L~i~~c~ 939 (962)
+.|++++++
T Consensus 398 ~~L~l~~N~ 406 (455)
T 3v47_A 398 QKIWLHTNP 406 (455)
T ss_dssp CEEECCSSC
T ss_pred cEEEccCCC
Confidence 999998765
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.85 E-value=2.1e-20 Score=216.56 Aligned_cols=297 Identities=19% Similarity=0.154 Sum_probs=190.3
Q ss_pred CCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCcccc-cccccCCCcCCeEeccCCCCcccccc-cccc
Q 038637 584 EHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFNL-PNEIGNLKHLRCLNLSRTRIQILPES-INSL 661 (962)
Q Consensus 584 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~l-p~~i~~L~~Lr~L~Ls~~~i~~lp~~-i~~L 661 (962)
++++.|.+.++. + ..++...|.++++|++|+|++| .+..+ |..|+++++|++|+|++|.++.+|.. +.++
T Consensus 32 ~~l~~L~L~~n~------l-~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 103 (477)
T 2id5_A 32 TETRLLDLGKNR------I-KTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGL 103 (477)
T ss_dssp TTCSEEECCSSC------C-CEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTC
T ss_pred CCCcEEECCCCc------c-ceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCcCCccCcccccCC
Confidence 467777766643 2 2344445778888999999888 56655 67888889999999998888888764 6788
Q ss_pred ccCcEEeeCCCccccccchhcccCCCccEEecCCCCCccccCCCCCCCCCCCccCCeEeCCCCCCCcccccCcccCCCeE
Q 038637 662 YNLHTILLENCWELKKLCKDMGNLTKLRHLRNSDAGLLEEMPKGFGKLTSLLTLGRFVVGKDSGSGLRELKSLTHLQGTL 741 (962)
Q Consensus 662 ~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L 741 (962)
++|++|++++|......|..+..+++|++|++++|......|..++.+++|++|.... ..........+.++++|+ .|
T Consensus 104 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~-~L 181 (477)
T 2id5_A 104 SNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEK-CNLTSIPTEALSHLHGLI-VL 181 (477)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEES-CCCSSCCHHHHTTCTTCC-EE
T ss_pred CCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCC-CcCcccChhHhcccCCCc-EE
Confidence 8999999988844444566788888999999988875444556778888888774322 122222223355666666 66
Q ss_pred EEeccCCCCChhhhhhhcCcCCcCCCceEEeccCCCCCCccchhhHHhhhccCCCCCCcCeEEEeecCCCCCCcCcCCCC
Q 038637 742 RISKLENVEDVGDACEAQLNNKVNLRTLLLDWSARDVQNLDQCEFETRVLSMLKPHRDVQELTIRGYGGTKFPIWLGDSS 821 (962)
Q Consensus 742 ~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~ 821 (962)
.+....- .......+..+++|+.|+++++.. ...++.......+|+.|++++|.+..+|.... ..
T Consensus 182 ~l~~n~i----~~~~~~~~~~l~~L~~L~l~~~~~----------~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~ 246 (477)
T 2id5_A 182 RLRHLNI----NAIRDYSFKRLYRLKVLEISHWPY----------LDTMTPNCLYGLNLTSLSITHCNLTAVPYLAV-RH 246 (477)
T ss_dssp EEESCCC----CEECTTCSCSCTTCCEEEEECCTT----------CCEECTTTTTTCCCSEEEEESSCCCSCCHHHH-TT
T ss_pred eCCCCcC----cEeChhhcccCcccceeeCCCCcc----------ccccCcccccCccccEEECcCCcccccCHHHh-cC
Confidence 6654321 112223466677778887776541 11222233334478888888877777764322 26
Q ss_pred CCCccEEEEeCCCCCCCCC-CCCCCCCcCeEeecCCCCceEeCccccCCCCCCCCCCcceeeccccccccccccccCCcc
Q 038637 822 FSKLVNLKFGYCRMCTSLP-SVGQLPLLKHLKISGMDRVKSVGLEFYGSSCSVPFPSLETLSFSDMREWEEWISCGAGQE 900 (962)
Q Consensus 822 l~~L~~L~L~~~~~~~~l~-~l~~lp~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~ 900 (962)
+++|+.|+|++|.+....+ .+..+++|+.|+|++|......+..|.+ +++|+.|+|+++ .++.+.. .
T Consensus 247 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~L~~N-~l~~~~~-----~ 314 (477)
T 2id5_A 247 LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRG------LNYLRVLNVSGN-QLTTLEE-----S 314 (477)
T ss_dssp CTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTT------CTTCCEEECCSS-CCSCCCG-----G
T ss_pred ccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcC------cccCCEEECCCC-cCceeCH-----h
Confidence 7778888888777654333 5677778888888776433322333322 777888888775 3444322 1
Q ss_pred ccCcCCccceEeEccCC
Q 038637 901 VDEVFPKLRKLSLFNCY 917 (962)
Q Consensus 901 ~~~~~p~L~~L~l~~c~ 917 (962)
....+++|+.|++++|+
T Consensus 315 ~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 315 VFHSVGNLETLILDSNP 331 (477)
T ss_dssp GBSCGGGCCEEECCSSC
T ss_pred HcCCCcccCEEEccCCC
Confidence 23456777888877763
No 36
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.85 E-value=3.6e-21 Score=210.29 Aligned_cols=93 Identities=22% Similarity=0.372 Sum_probs=84.1
Q ss_pred CCCcccEEEeCCCcCcccccccccCCCcCCeEeccCCCCccccccccccccCcEEeeCCCccccccchhcccCCCccEEe
Q 038637 613 HLPRLRVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLENCWELKKLCKDMGNLTKLRHLR 692 (962)
Q Consensus 613 ~l~~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 692 (962)
....+++|+|++| .+..+|..++++++|++|+|++|.++.+|..++++++|++|++++| .+..+|..+.++++|++|+
T Consensus 79 ~~~~l~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 79 TQPGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELS 156 (328)
T ss_dssp TSTTCCEEEEESS-CCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTCCEEE
T ss_pred cccceeEEEccCC-CchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCCCEEE
Confidence 4578999999999 7889999999999999999999999999999999999999999999 6779999999999999999
Q ss_pred cCCCCCccccCCCCC
Q 038637 693 NSDAGLLEEMPKGFG 707 (962)
Q Consensus 693 l~~~~~~~~~p~~i~ 707 (962)
+++|.....+|..++
T Consensus 157 L~~n~~~~~~p~~~~ 171 (328)
T 4fcg_A 157 IRACPELTELPEPLA 171 (328)
T ss_dssp EEEETTCCCCCSCSE
T ss_pred CCCCCCccccChhHh
Confidence 999876777776543
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.85 E-value=2.6e-20 Score=212.76 Aligned_cols=299 Identities=16% Similarity=0.142 Sum_probs=170.2
Q ss_pred CceeEEEEEeeccccccccccccCCCCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCcccccccccCC
Q 038637 559 QTLRHFSYICREYDGKKRLESVCDVEHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFNLPNEIGNL 638 (962)
Q Consensus 559 ~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~lp~~i~~L 638 (962)
...+++.+..+... .++.+..+++|+.|.+.++. +. .++ +..+++|++|++++| .+..+| ++++
T Consensus 42 ~~L~~L~Ls~n~l~---~~~~l~~l~~L~~L~Ls~n~------l~-~~~---~~~l~~L~~L~Ls~N-~l~~~~--~~~l 105 (457)
T 3bz5_A 42 ATLTSLDCHNSSIT---DMTGIEKLTGLTKLICTSNN------IT-TLD---LSQNTNLTYLACDSN-KLTNLD--VTPL 105 (457)
T ss_dssp TTCCEEECCSSCCC---CCTTGGGCTTCSEEECCSSC------CS-CCC---CTTCTTCSEEECCSS-CCSCCC--CTTC
T ss_pred CCCCEEEccCCCcc---cChhhcccCCCCEEEccCCc------CC-eEc---cccCCCCCEEECcCC-CCceee--cCCC
Confidence 45566666554332 23456667777777766643 11 122 566777777777777 566664 7777
Q ss_pred CcCCeEeccCCCCccccccccccccCcEEeeCCCccccccchhcccCCCccEEecCCCCCccccCCCCCCCCCCCccCCe
Q 038637 639 KHLRCLNLSRTRIQILPESINSLYNLHTILLENCWELKKLCKDMGNLTKLRHLRNSDAGLLEEMPKGFGKLTSLLTLGRF 718 (962)
Q Consensus 639 ~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~ 718 (962)
++|++|++++|.++.+| ++++++|++|++++| .+..+| +..+++|++|++++|.....+ .++.+++|++|...
T Consensus 106 ~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N-~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls 178 (457)
T 3bz5_A 106 TKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARN-TLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCS 178 (457)
T ss_dssp TTCCEEECCSSCCSCCC--CTTCTTCCEEECTTS-CCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECC
T ss_pred CcCCEEECCCCcCCeec--CCCCCcCCEEECCCC-ccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECC
Confidence 77777777777777765 677777777777777 555553 677777777777777545544 35666666666322
Q ss_pred EeCCCCCCCcccccCcccCCCeEEEeccCCCCChhhhhhhcCcCCcCCCceEEeccCCCCCCccchhhHHhhhccCCCCC
Q 038637 719 VVGKDSGSGLRELKSLTHLQGTLRISKLENVEDVGDACEAQLNNKVNLRTLLLDWSARDVQNLDQCEFETRVLSMLKPHR 798 (962)
Q Consensus 719 ~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~ 798 (962)
.. ...+ +. +..++.|+ .|.+....- ... .+..+++|+.|+++++... .++ +..++
T Consensus 179 ~n-~l~~--l~-l~~l~~L~-~L~l~~N~l-~~~------~l~~l~~L~~L~Ls~N~l~-----------~ip--~~~l~ 233 (457)
T 3bz5_A 179 FN-KITE--LD-VSQNKLLN-RLNCDTNNI-TKL------DLNQNIQLTFLDCSSNKLT-----------EID--VTPLT 233 (457)
T ss_dssp SS-CCCC--CC-CTTCTTCC-EEECCSSCC-SCC------CCTTCTTCSEEECCSSCCS-----------CCC--CTTCT
T ss_pred CC-ccce--ec-cccCCCCC-EEECcCCcC-Cee------ccccCCCCCEEECcCCccc-----------ccC--ccccC
Confidence 21 1111 11 44555555 555543211 111 2556677777777766521 112 55667
Q ss_pred CcCeEEEeecCCCCCCcCcCCCCCCCccEE----------EEeCCCCCCCCCCCCCCCCcCeEeecCCCCceEeCccccC
Q 038637 799 DVQELTIRGYGGTKFPIWLGDSSFSKLVNL----------KFGYCRMCTSLPSVGQLPLLKHLKISGMDRVKSVGLEFYG 868 (962)
Q Consensus 799 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L----------~L~~~~~~~~l~~l~~lp~L~~L~L~~~~~~~~~~~~~~~ 868 (962)
+|+.|++++|.+..+|.. .+++|+.| ++++|...+.+| ++.+++|+.|++++|..+..++.....
T Consensus 234 ~L~~L~l~~N~l~~~~~~----~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-~~~l~~L~~L~Ls~n~~l~~l~~~~~~ 308 (457)
T 3bz5_A 234 QLTYFDCSVNPLTELDVS----TLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-AEGCRKIKELDVTHNTQLYLLDCQAAG 308 (457)
T ss_dssp TCSEEECCSSCCSCCCCT----TCTTCCEEECTTCCCSCCCCTTCTTCCEEE-CTTCTTCCCCCCTTCTTCCEEECTTCC
T ss_pred CCCEEEeeCCcCCCcCHH----HCCCCCEEeccCCCCCEEECCCCccCCccc-ccccccCCEEECCCCcccceeccCCCc
Confidence 777777777776666532 34444443 344444333343 456677777777777766665432110
Q ss_pred CC--CCCCCCCcceeeccccccccccccccCCccccCcCCccceEeEccCCCcc
Q 038637 869 SS--CSVPFPSLETLSFSDMREWEEWISCGAGQEVDEVFPKLRKLSLFNCYKLQ 920 (962)
Q Consensus 869 ~~--~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~ 920 (962)
-. ....+++|+.|+++++ .++.+ ..+.+++|+.|++++| +++
T Consensus 309 L~~L~l~~~~~L~~L~L~~N-~l~~l--------~l~~l~~L~~L~l~~N-~l~ 352 (457)
T 3bz5_A 309 ITELDLSQNPKLVYLYLNNT-ELTEL--------DVSHNTKLKSLSCVNA-HIQ 352 (457)
T ss_dssp CSCCCCTTCTTCCEEECTTC-CCSCC--------CCTTCTTCSEEECCSS-CCC
T ss_pred ceEechhhcccCCEEECCCC-ccccc--------ccccCCcCcEEECCCC-CCC
Confidence 00 0112455555555553 23322 1345677777777775 666
No 38
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.84 E-value=3.7e-20 Score=224.65 Aligned_cols=125 Identities=19% Similarity=0.187 Sum_probs=104.5
Q ss_pred CCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCcccc-cccccCCCcCCeEeccCCCCccccc-ccccc
Q 038637 584 EHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFNL-PNEIGNLKHLRCLNLSRTRIQILPE-SINSL 661 (962)
Q Consensus 584 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~l-p~~i~~L~~Lr~L~Ls~~~i~~lp~-~i~~L 661 (962)
++++.|.+.++. + ..++...|.++++|++|+|++| .+..+ |..++++++|++|+|++|.++.+|. .++++
T Consensus 25 ~~l~~L~Ls~n~------l-~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l 96 (680)
T 1ziw_A 25 TNITVLNLTHNQ------L-RRLPAANFTRYSQLTSLDVGFN-TISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFC 96 (680)
T ss_dssp TTCSEEECCSSC------C-CCCCGGGGGGGTTCSEEECCSS-CCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCcEEECCCCC------C-CCcCHHHHhCCCcCcEEECCCC-ccCccCHHHHhcccCcCEEECCCCccCccChhhhccC
Confidence 688999887653 2 3456666889999999999999 56555 6789999999999999999999997 59999
Q ss_pred ccCcEEeeCCCccccccc-hhcccCCCccEEecCCCCCccccCCCCCCCCCCCccCC
Q 038637 662 YNLHTILLENCWELKKLC-KDMGNLTKLRHLRNSDAGLLEEMPKGFGKLTSLLTLGR 717 (962)
Q Consensus 662 ~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~ 717 (962)
++|++|++++| .+..+| ..+.++++|++|++++|......|..++++++|++|..
T Consensus 97 ~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 152 (680)
T 1ziw_A 97 TNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLL 152 (680)
T ss_dssp TTCSEEECCSS-CCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEEC
T ss_pred CCCCEEECCCC-ccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEc
Confidence 99999999999 566665 67899999999999999865666677889999998843
No 39
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.84 E-value=4.4e-20 Score=213.83 Aligned_cols=290 Identities=20% Similarity=0.187 Sum_probs=208.7
Q ss_pred CcccEEEeCCCcCcccc-cccccCCCcCCeEeccCCCCccc-cccccccccCcEEeeCCCccccccchh-cccCCCccEE
Q 038637 615 PRLRVFSLCGYCNIFNL-PNEIGNLKHLRCLNLSRTRIQIL-PESINSLYNLHTILLENCWELKKLCKD-MGNLTKLRHL 691 (962)
Q Consensus 615 ~~Lr~L~L~~~~~~~~l-p~~i~~L~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L 691 (962)
+.|++|+|++| .+..+ |..|.++++|++|+|++|.++.+ |..+.++++|++|+|++| .+..+|.. +.++++|++|
T Consensus 32 ~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 109 (477)
T 2id5_A 32 TETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKL 109 (477)
T ss_dssp TTCSEEECCSS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEE
T ss_pred CCCcEEECCCC-ccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cCCccCcccccCCCCCCEE
Confidence 57999999999 67776 57899999999999999999976 778999999999999999 67778764 6899999999
Q ss_pred ecCCCCCccccCCCCCCCCCCCccCCeEeCCCCCCCcccccCcccCCCeEEEeccCCCCChhhhhhhcCcCCcCCCceEE
Q 038637 692 RNSDAGLLEEMPKGFGKLTSLLTLGRFVVGKDSGSGLRELKSLTHLQGTLRISKLENVEDVGDACEAQLNNKVNLRTLLL 771 (962)
Q Consensus 692 ~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l 771 (962)
++++|......|..++.+++|++|.... +.........+.++++|+ .|.+....- .......+..+++|+.|.+
T Consensus 110 ~Ls~n~i~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~-~L~l~~n~l----~~~~~~~l~~l~~L~~L~l 183 (477)
T 2id5_A 110 DISENKIVILLDYMFQDLYNLKSLEVGD-NDLVYISHRAFSGLNSLE-QLTLEKCNL----TSIPTEALSHLHGLIVLRL 183 (477)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEEECC-TTCCEECTTSSTTCTTCC-EEEEESCCC----SSCCHHHHTTCTTCCEEEE
T ss_pred ECCCCccccCChhHccccccCCEEECCC-CccceeChhhccCCCCCC-EEECCCCcC----cccChhHhcccCCCcEEeC
Confidence 9999986566677889999998884322 111222233456667777 777765321 1112234567788999988
Q ss_pred eccCCCCCCccchhhHHhhhccCCCCCCcCeEEEeecCCC-CCCcCcCCCCCCCccEEEEeCCCCCCCCC--CCCCCCCc
Q 038637 772 DWSARDVQNLDQCEFETRVLSMLKPHRDVQELTIRGYGGT-KFPIWLGDSSFSKLVNLKFGYCRMCTSLP--SVGQLPLL 848 (962)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~L~~~~~~~~l~--~l~~lp~L 848 (962)
.++... ......+..+++|+.|+++++... .+|.... ...+|+.|+|++|.+. .+| .+..+++|
T Consensus 184 ~~n~i~----------~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L 250 (477)
T 2id5_A 184 RHLNIN----------AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL--YGLNLTSLSITHCNLT-AVPYLAVRHLVYL 250 (477)
T ss_dssp ESCCCC----------EECTTCSCSCTTCCEEEEECCTTCCEECTTTT--TTCCCSEEEEESSCCC-SCCHHHHTTCTTC
T ss_pred CCCcCc----------EeChhhcccCcccceeeCCCCccccccCcccc--cCccccEEECcCCccc-ccCHHHhcCcccc
Confidence 877621 122345677888999999887533 4555543 4558999999998766 355 57888999
Q ss_pred CeEeecCCCCceEeCccccCCCCCCCCCCcceeeccccccccccccccCCccccCcCCccceEeEccCCCccccCC----
Q 038637 849 KHLKISGMDRVKSVGLEFYGSSCSVPFPSLETLSFSDMREWEEWISCGAGQEVDEVFPKLRKLSLFNCYKLQGTLP---- 924 (962)
Q Consensus 849 ~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~lp---- 924 (962)
+.|+|++|. +..++...... +++|+.|+|+++ .+..+.. .....+++|+.|++++| +++ .+|
T Consensus 251 ~~L~Ls~n~-l~~~~~~~~~~-----l~~L~~L~L~~n-~l~~~~~-----~~~~~l~~L~~L~L~~N-~l~-~~~~~~~ 316 (477)
T 2id5_A 251 RFLNLSYNP-ISTIEGSMLHE-----LLRLQEIQLVGG-QLAVVEP-----YAFRGLNYLRVLNVSGN-QLT-TLEESVF 316 (477)
T ss_dssp CEEECCSSC-CCEECTTSCTT-----CTTCCEEECCSS-CCSEECT-----TTBTTCTTCCEEECCSS-CCS-CCCGGGB
T ss_pred CeeECCCCc-CCccChhhccc-----cccCCEEECCCC-ccceECH-----HHhcCcccCCEEECCCC-cCc-eeCHhHc
Confidence 999998875 44554432222 888999999885 3444322 22446789999999987 777 465
Q ss_pred CCCCCcceEEEcccc
Q 038637 925 KRLLLLEKLVIKSCH 939 (962)
Q Consensus 925 ~~l~~L~~L~i~~c~ 939 (962)
..+++|+.|++.+++
T Consensus 317 ~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 317 HSVGNLETLILDSNP 331 (477)
T ss_dssp SCGGGCCEEECCSSC
T ss_pred CCCcccCEEEccCCC
Confidence 346788888887765
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.84 E-value=5.1e-20 Score=207.17 Aligned_cols=302 Identities=17% Similarity=0.134 Sum_probs=220.9
Q ss_pred CceeEEEEEeecccccccccc--ccCCCCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCccccc-ccc
Q 038637 559 QTLRHFSYICREYDGKKRLES--VCDVEHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFNLP-NEI 635 (962)
Q Consensus 559 ~~~r~ls~~~~~~~~~~~~~~--~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~lp-~~i 635 (962)
...+.+.+..+... .++. +..+++|+.|.+.++. + ..++...|..+++|++|+|++| .+..+| ..+
T Consensus 45 ~~l~~l~l~~~~l~---~l~~~~~~~l~~L~~L~L~~n~------i-~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~ 113 (390)
T 3o6n_A 45 NNQKIVTFKNSTMR---KLPAALLDSFRQVELLNLNDLQ------I-EEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVF 113 (390)
T ss_dssp CCCSEEEEESCEES---EECTHHHHHCCCCSEEECTTSC------C-CEECTTTTTTCTTCCEEECCSS-CCCCCCTTTT
T ss_pred CCceEEEecCCchh---hCChhHhcccccCcEEECCCCc------c-cccChhhccCCCCcCEEECCCC-CCCcCCHHHh
Confidence 56778887765432 2222 5678999999988753 2 3345556789999999999999 677664 668
Q ss_pred cCCCcCCeEeccCCCCcccccc-ccccccCcEEeeCCCcccccc-chhcccCCCccEEecCCCCCccccCCCCCCCCCCC
Q 038637 636 GNLKHLRCLNLSRTRIQILPES-INSLYNLHTILLENCWELKKL-CKDMGNLTKLRHLRNSDAGLLEEMPKGFGKLTSLL 713 (962)
Q Consensus 636 ~~L~~Lr~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~ 713 (962)
+++++|++|+|++|.++.+|.. +.++++|++|++++| .+..+ |..+..+++|++|++++|. +..++ ++.+++|+
T Consensus 114 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~--~~~l~~L~ 189 (390)
T 3o6n_A 114 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNR-LTHVD--LSLIPSLF 189 (390)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSSC-CSBCC--GGGCTTCS
T ss_pred cCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEECCCCc-CCccc--cccccccc
Confidence 9999999999999999999987 489999999999999 55555 5568999999999999998 44443 56677777
Q ss_pred ccCCeEeCCCCCCCcccccCcccCCCeEEEeccCCCCChhhhhhhcCcCCcCCCceEEeccCCCCCCccchhhHHhhhcc
Q 038637 714 TLGRFVVGKDSGSGLRELKSLTHLQGTLRISKLENVEDVGDACEAQLNNKVNLRTLLLDWSARDVQNLDQCEFETRVLSM 793 (962)
Q Consensus 714 ~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 793 (962)
.|.. ....+..+.....|+ .|.+....- .. .+ ....++|+.|.+.++... . ...
T Consensus 190 ~L~l------~~n~l~~~~~~~~L~-~L~l~~n~l-~~----~~--~~~~~~L~~L~l~~n~l~-----~-------~~~ 243 (390)
T 3o6n_A 190 HANV------SYNLLSTLAIPIAVE-ELDASHNSI-NV----VR--GPVNVELTILKLQHNNLT-----D-------TAW 243 (390)
T ss_dssp EEEC------CSSCCSEEECCSSCS-EEECCSSCC-CE----EE--CCCCSSCCEEECCSSCCC-----C-------CGG
T ss_pred eeec------ccccccccCCCCcce-EEECCCCee-ee----cc--ccccccccEEECCCCCCc-----c-------cHH
Confidence 7632 122344444555666 666654221 11 11 123468999999988621 1 134
Q ss_pred CCCCCCcCeEEEeecCCCCC-CcCcCCCCCCCccEEEEeCCCCCCCCCCCCCCCCcCeEeecCCCCceEeCccccCCCCC
Q 038637 794 LKPHRDVQELTIRGYGGTKF-PIWLGDSSFSKLVNLKFGYCRMCTSLPSVGQLPLLKHLKISGMDRVKSVGLEFYGSSCS 872 (962)
Q Consensus 794 l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~~~~ 872 (962)
+..+++|+.|++++|.+... |..+. .+++|+.|+|++|.+....+.++.+|+|++|++++|. +..++..+..
T Consensus 244 l~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~---- 316 (390)
T 3o6n_A 244 LLNYPGLVEVDLSYNELEKIMYHPFV--KMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQ---- 316 (390)
T ss_dssp GGGCTTCSEEECCSSCCCEEESGGGT--TCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHH----
T ss_pred HcCCCCccEEECCCCcCCCcChhHcc--ccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCc-ceecCccccc----
Confidence 66788999999999988765 66664 7899999999999876543356789999999999984 5555554433
Q ss_pred CCCCCcceeeccccccccccccccCCccccCcCCccceEeEccCCCcc
Q 038637 873 VPFPSLETLSFSDMREWEEWISCGAGQEVDEVFPKLRKLSLFNCYKLQ 920 (962)
Q Consensus 873 ~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~ 920 (962)
+++|+.|++++++ +..+. ...+++|+.|++++| .+.
T Consensus 317 --l~~L~~L~L~~N~-i~~~~--------~~~~~~L~~L~l~~N-~~~ 352 (390)
T 3o6n_A 317 --FDRLENLYLDHNS-IVTLK--------LSTHHTLKNLTLSHN-DWD 352 (390)
T ss_dssp --HTTCSEEECCSSC-CCCCC--------CCTTCCCSEEECCSS-CEE
T ss_pred --cCcCCEEECCCCc-cceeC--------chhhccCCEEEcCCC-Ccc
Confidence 8999999999964 44432 456899999999998 443
No 41
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.82 E-value=2.5e-19 Score=196.73 Aligned_cols=280 Identities=16% Similarity=0.164 Sum_probs=174.3
Q ss_pred cccEEEeCCCcCcccccccccCCCcCCeEeccCCCCccccc-cccccccCcEEeeCCCcccccc-chhcccCCCccEEec
Q 038637 616 RLRVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPE-SINSLYNLHTILLENCWELKKL-CKDMGNLTKLRHLRN 693 (962)
Q Consensus 616 ~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l 693 (962)
+|++++++++ .+..+|..+. .+|++|+|++|.+..+|. .+.++++|++|++++| .+..+ |..+..+++|++|++
T Consensus 34 ~l~~l~~~~~-~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 34 HLRVVQCSDL-GLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp ETTEEECCSS-CCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEEC
T ss_pred cCCEEECCCC-CccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEEC
Confidence 5777777777 5677776553 577777777777776643 6777777777777777 44444 666777777777777
Q ss_pred CCCCCccccCCCCCCCCCCCccCCeEeCCCCCCCcccccCcccCCCeEEEeccCCCCChhhhhhhcCcCCcCCCceEEec
Q 038637 694 SDAGLLEEMPKGFGKLTSLLTLGRFVVGKDSGSGLRELKSLTHLQGTLRISKLENVEDVGDACEAQLNNKVNLRTLLLDW 773 (962)
Q Consensus 694 ~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 773 (962)
++|. +..+|..+. ++|++|..... . +. ......+..+++|+.|++.+
T Consensus 110 ~~n~-l~~l~~~~~--~~L~~L~l~~n------~---------i~---------------~~~~~~~~~l~~L~~L~l~~ 156 (332)
T 2ft3_A 110 SKNH-LVEIPPNLP--SSLVELRIHDN------R---------IR---------------KVPKGVFSGLRNMNCIEMGG 156 (332)
T ss_dssp CSSC-CCSCCSSCC--TTCCEEECCSS------C---------CC---------------CCCSGGGSSCSSCCEEECCS
T ss_pred CCCc-CCccCcccc--ccCCEEECCCC------c---------cC---------------ccCHhHhCCCccCCEEECCC
Confidence 7776 456665543 44544421100 0 00 00011234555666666665
Q ss_pred cCCCCCCccchhhHHhhhccCCCCCCcCeEEEeecCCCCCCcCcCCCCCCCccEEEEeCCCCCCCCC-CCCCCCCcCeEe
Q 038637 774 SARDVQNLDQCEFETRVLSMLKPHRDVQELTIRGYGGTKFPIWLGDSSFSKLVNLKFGYCRMCTSLP-SVGQLPLLKHLK 852 (962)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L~~L~ 852 (962)
+... . ....+..+..+ +|+.|++++|.+..+|..+ .++|++|++++|.+....+ .+..+++|++|+
T Consensus 157 n~l~-----~---~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~----~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~ 223 (332)
T 2ft3_A 157 NPLE-----N---SGFEPGAFDGL-KLNYLRISEAKLTGIPKDL----PETLNELHLDHNKIQAIELEDLLRYSKLYRLG 223 (332)
T ss_dssp CCCB-----G---GGSCTTSSCSC-CCSCCBCCSSBCSSCCSSS----CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCB
T ss_pred Cccc-----c---CCCCcccccCC-ccCEEECcCCCCCccCccc----cCCCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence 5411 0 01123334444 7888888888877777655 2678888888887766543 677888888888
Q ss_pred ecCCCCceEeCc-cccCCCCCCCCCCcceeeccccccccccccccCCccccCcCCccceEeEccCCCccccCCC------
Q 038637 853 ISGMDRVKSVGL-EFYGSSCSVPFPSLETLSFSDMREWEEWISCGAGQEVDEVFPKLRKLSLFNCYKLQGTLPK------ 925 (962)
Q Consensus 853 L~~~~~~~~~~~-~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~lp~------ 925 (962)
+++|. +..++. .+.. +++|+.|+++++ .+..++. ....+++|+.|++++| .++ .+|.
T Consensus 224 L~~N~-l~~~~~~~~~~------l~~L~~L~L~~N-~l~~lp~------~l~~l~~L~~L~l~~N-~l~-~~~~~~~~~~ 287 (332)
T 2ft3_A 224 LGHNQ-IRMIENGSLSF------LPTLRELHLDNN-KLSRVPA------GLPDLKLLQVVYLHTN-NIT-KVGVNDFCPV 287 (332)
T ss_dssp CCSSC-CCCCCTTGGGG------CTTCCEEECCSS-CCCBCCT------TGGGCTTCCEEECCSS-CCC-BCCTTSSSCS
T ss_pred CCCCc-CCcCChhHhhC------CCCCCEEECCCC-cCeecCh------hhhcCccCCEEECCCC-CCC-ccChhHcccc
Confidence 88764 333333 2322 788888888875 4444422 2456788888888887 676 4541
Q ss_pred ----CCCCcceEEEccccCc-----cccCCCCCCcCEEecCCCCC
Q 038637 926 ----RLLLLEKLVIKSCHRL-----LVTIQCLPTLTELHTKLCRR 961 (962)
Q Consensus 926 ----~l~~L~~L~i~~c~~l-----~~~l~~l~~L~~L~l~~C~~ 961 (962)
..++|+.|++.+++.. +..+.++++|+.|++++|.+
T Consensus 288 ~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~~ 332 (332)
T 2ft3_A 288 GFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYKK 332 (332)
T ss_dssp SCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC-----
T ss_pred ccccccccccceEeecCcccccccCcccccccchhhhhhcccccC
Confidence 1356888998888733 24577889999999998864
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.82 E-value=1.3e-19 Score=215.30 Aligned_cols=303 Identities=16% Similarity=0.095 Sum_probs=218.6
Q ss_pred CceeEEEEEeeccccccccccccCCCCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCccccc-ccccC
Q 038637 559 QTLRHFSYICREYDGKKRLESVCDVEHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFNLP-NEIGN 637 (962)
Q Consensus 559 ~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~lp-~~i~~ 637 (962)
...+.+.+..+...... ...+..+++|+.|.+.++. + ..++...|..+++|++|+|++| .+..+| ..|++
T Consensus 51 ~~l~~l~l~~~~l~~lp-~~~~~~l~~L~~L~L~~n~------l-~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~ 121 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLP-AALLDSFRQVELLNLNDLQ------I-EEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQN 121 (597)
T ss_dssp CCCSEEEESSCEESEEC-THHHHHCCCCSEEECTTSC------C-CEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTT
T ss_pred CCceEEEeeCCCCCCcC-HHHHccCCCCcEEECCCCC------C-CCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcC
Confidence 34566666544322110 1124578999999988753 2 2345556789999999999999 577765 56799
Q ss_pred CCcCCeEeccCCCCcccccc-ccccccCcEEeeCCCccccccchhcccCCCccEEecCCCCCccccCCCCCCCCCCCccC
Q 038637 638 LKHLRCLNLSRTRIQILPES-INSLYNLHTILLENCWELKKLCKDMGNLTKLRHLRNSDAGLLEEMPKGFGKLTSLLTLG 716 (962)
Q Consensus 638 L~~Lr~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 716 (962)
+++|++|+|++|.++.+|.. ++++++|++|++++|......|..+..+++|++|++++|. +..+| ++.+++|+.|.
T Consensus 122 l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~--~~~l~~L~~L~ 198 (597)
T 3oja_B 122 VPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVD--LSLIPSLFHAN 198 (597)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC-CSBCC--GGGCTTCSEEE
T ss_pred CCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC-CCCcC--hhhhhhhhhhh
Confidence 99999999999999999987 4899999999999994444445579999999999999998 45443 55677777763
Q ss_pred CeEeCCCCCCCcccccCcccCCCeEEEeccCCCCChhhhhhhcCcCCcCCCceEEeccCCCCCCccchhhHHhhhccCCC
Q 038637 717 RFVVGKDSGSGLRELKSLTHLQGTLRISKLENVEDVGDACEAQLNNKVNLRTLLLDWSARDVQNLDQCEFETRVLSMLKP 796 (962)
Q Consensus 717 ~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~ 796 (962)
. +...+..+.....|+ .|.+....- .. +.. ....+|+.|.++++... + +..+..
T Consensus 199 l------~~n~l~~l~~~~~L~-~L~ls~n~l-~~----~~~--~~~~~L~~L~L~~n~l~-----~-------~~~l~~ 252 (597)
T 3oja_B 199 V------SYNLLSTLAIPIAVE-ELDASHNSI-NV----VRG--PVNVELTILKLQHNNLT-----D-------TAWLLN 252 (597)
T ss_dssp C------CSSCCSEEECCTTCS-EEECCSSCC-CE----EEC--SCCSCCCEEECCSSCCC-----C-------CGGGGG
T ss_pred c------ccCccccccCCchhh-eeeccCCcc-cc----ccc--ccCCCCCEEECCCCCCC-----C-------Chhhcc
Confidence 2 223344455555666 666654321 11 111 12358999999988721 1 245667
Q ss_pred CCCcCeEEEeecCCCCC-CcCcCCCCCCCccEEEEeCCCCCCCCCCCCCCCCcCeEeecCCCCceEeCccccCCCCCCCC
Q 038637 797 HRDVQELTIRGYGGTKF-PIWLGDSSFSKLVNLKFGYCRMCTSLPSVGQLPLLKHLKISGMDRVKSVGLEFYGSSCSVPF 875 (962)
Q Consensus 797 ~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~~~~~~f 875 (962)
+++|+.|++++|.+... |..+. .+++|+.|+|++|.+....+.++.+|+|+.|+|++|. +..++..+.. +
T Consensus 253 l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~------l 323 (597)
T 3oja_B 253 YPGLVEVDLSYNELEKIMYHPFV--KMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQ------F 323 (597)
T ss_dssp CTTCSEEECCSSCCCEEESGGGT--TCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHH------H
T ss_pred CCCCCEEECCCCccCCCCHHHhc--CccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCC-CCccCccccc------C
Confidence 89999999999988765 66664 7999999999999887643466789999999999975 4456555433 8
Q ss_pred CCcceeeccccccccccccccCCccccCcCCccceEeEccCC
Q 038637 876 PSLETLSFSDMREWEEWISCGAGQEVDEVFPKLRKLSLFNCY 917 (962)
Q Consensus 876 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~c~ 917 (962)
++|+.|+|++|. +..+. ...+|+|+.|++++|+
T Consensus 324 ~~L~~L~L~~N~-l~~~~--------~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 324 DRLENLYLDHNS-IVTLK--------LSTHHTLKNLTLSHND 356 (597)
T ss_dssp TTCSEEECCSSC-CCCCC--------CCTTCCCSEEECCSSC
T ss_pred CCCCEEECCCCC-CCCcC--------hhhcCCCCEEEeeCCC
Confidence 999999999964 44332 4568999999999984
No 43
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.81 E-value=3.8e-19 Score=214.16 Aligned_cols=379 Identities=16% Similarity=0.118 Sum_probs=227.1
Q ss_pred cCCceeEEEEEeeccccccccccccCCCCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCccccc-ccc
Q 038637 557 FSQTLRHFSYICREYDGKKRLESVCDVEHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFNLP-NEI 635 (962)
Q Consensus 557 ~~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~lp-~~i 635 (962)
.+..++++.+..+..... ....|.++++|+.|.+.++. ...++...|.++++|++|+|++| .+..+| ..|
T Consensus 50 lp~~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~-------i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f 120 (635)
T 4g8a_A 50 LPFSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCE-------IQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAF 120 (635)
T ss_dssp SCTTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCC-------CCEECTTTTTTCTTCCEEECTTC-CCCEECGGGG
T ss_pred CCcCCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCc-------CCCcChhHhcCCCCCCEEEccCC-cCCCCCHHHh
Confidence 556788888877644322 12357789999999888753 23466677899999999999999 688887 568
Q ss_pred cCCCcCCeEeccCCCCccccc-cccccccCcEEeeCCCcccc--ccchhcccCCCccEEecCCCCCccccCCCCCCCCCC
Q 038637 636 GNLKHLRCLNLSRTRIQILPE-SINSLYNLHTILLENCWELK--KLCKDMGNLTKLRHLRNSDAGLLEEMPKGFGKLTSL 712 (962)
Q Consensus 636 ~~L~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~--~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L 712 (962)
.++.+|++|+|++|.++.+|. .+++|++|++|++++| .+. .+|..+..+++|++|++++|......|..+..+.++
T Consensus 121 ~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l 199 (635)
T 4g8a_A 121 SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 199 (635)
T ss_dssp TTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTC
T ss_pred cCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccC-ccccCCCchhhccchhhhhhcccCccccccccccccchhhh
Confidence 999999999999999998886 5899999999999999 444 457888999999999999987433223323222221
Q ss_pred CccCC-------------------------------------------------eEe--CC---------CCCCC-----
Q 038637 713 LTLGR-------------------------------------------------FVV--GK---------DSGSG----- 727 (962)
Q Consensus 713 ~~L~~-------------------------------------------------~~~--~~---------~~~~~----- 727 (962)
+.+.. ... .. .....
T Consensus 200 ~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~ 279 (635)
T 4g8a_A 200 PLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLC 279 (635)
T ss_dssp TTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGG
T ss_pred hhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccccccccccccccccc
Confidence 11000 000 00 00000
Q ss_pred -----------------------------------------cccccCcccCCCeEEEeccC--CCCC-----h-------
Q 038637 728 -----------------------------------------LRELKSLTHLQGTLRISKLE--NVED-----V------- 752 (962)
Q Consensus 728 -----------------------------------------~~~l~~L~~L~~~L~i~~l~--~~~~-----~------- 752 (962)
+..+.....++ .|.+.+.. .... .
T Consensus 280 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~l~~L~~l~l~~ 358 (635)
T 4g8a_A 280 NLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQ-HLELVNCKFGQFPTLKLKSLKRLTFTS 358 (635)
T ss_dssp GSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCS-EEEEESCEESSCCCCBCTTCCEEEEES
T ss_pred chhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhh-hhhcccccccCcCcccchhhhhccccc
Confidence 00011111222 23322110 0000 0
Q ss_pred -hhhhhhcCcCCcCCCceEEeccCCCCCCccchh---------------hHHhhhccCCCCCCcCeEEEeecCCCCCCcC
Q 038637 753 -GDACEAQLNNKVNLRTLLLDWSARDVQNLDQCE---------------FETRVLSMLKPHRDVQELTIRGYGGTKFPIW 816 (962)
Q Consensus 753 -~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~---------------~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~ 816 (962)
..........+++|+.|.++.+........... ........+..+++|+.+++.++.....+..
T Consensus 359 n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~ 438 (635)
T 4g8a_A 359 NKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEF 438 (635)
T ss_dssp CCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSS
T ss_pred ccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccc
Confidence 000112233567788887776542100000000 0001122234456666666665543322211
Q ss_pred cCCCCCCCccEEEEeCCCCCCCCC-CCCCCCCcCeEeecCCCCceEe-CccccCCCCCCCCCCcceeecccccccccccc
Q 038637 817 LGDSSFSKLVNLKFGYCRMCTSLP-SVGQLPLLKHLKISGMDRVKSV-GLEFYGSSCSVPFPSLETLSFSDMREWEEWIS 894 (962)
Q Consensus 817 ~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L~~L~L~~~~~~~~~-~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~ 894 (962)
.....+++|+.++++.|.+....+ .+..+++|+.|++++|.....+ +..+.. +++|+.|+|++| .++.+..
T Consensus 439 ~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~------l~~L~~L~Ls~N-~L~~l~~ 511 (635)
T 4g8a_A 439 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE------LRNLTFLDLSQC-QLEQLSP 511 (635)
T ss_dssp CTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTT------CTTCCEEECTTS-CCCEECT
T ss_pred cccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhh------ccccCEEECCCC-ccCCcCh
Confidence 111357778888888777665444 5667788888888887644432 332322 788999999886 4555432
Q ss_pred ccCCccccCcCCccceEeEccCCCccccCC----CCCCCcceEEEccccCc---cccCCCC-CCcCEEecCCCC
Q 038637 895 CGAGQEVDEVFPKLRKLSLFNCYKLQGTLP----KRLLLLEKLVIKSCHRL---LVTIQCL-PTLTELHTKLCR 960 (962)
Q Consensus 895 ~~~~~~~~~~~p~L~~L~l~~c~~L~~~lp----~~l~~L~~L~i~~c~~l---~~~l~~l-~~L~~L~l~~C~ 960 (962)
...+.+++|+.|+|++| +++ .+| ..+++|+.|+++++.-- +..+.++ ++|+.|+|+++|
T Consensus 512 -----~~f~~l~~L~~L~Ls~N-~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 512 -----TAFNSLSSLQVLNMSHN-NFF-SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp -----TTTTTCTTCCEEECTTS-CCC-BCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred -----HHHcCCCCCCEEECCCC-cCC-CCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 22456789999999987 787 454 35788999999887622 3356666 579999998765
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.81 E-value=9.5e-19 Score=191.92 Aligned_cols=279 Identities=17% Similarity=0.184 Sum_probs=173.8
Q ss_pred cccEEEeCCCcCcccccccccCCCcCCeEeccCCCCccccc-cccccccCcEEeeCCCcccccc-chhcccCCCccEEec
Q 038637 616 RLRVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPE-SINSLYNLHTILLENCWELKKL-CKDMGNLTKLRHLRN 693 (962)
Q Consensus 616 ~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l 693 (962)
+|++++++++ .+..+|..+. ++|++|+|++|.++.+|. .++++++|++|++++| .+..+ |..+..+++|++|++
T Consensus 32 ~l~~l~~~~~-~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L 107 (330)
T 1xku_A 32 HLRVVQCSDL-GLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYL 107 (330)
T ss_dssp ETTEEECTTS-CCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEEC
T ss_pred CCeEEEecCC-CccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEEC
Confidence 5666777666 5666665443 466777777777766655 5667777777777766 34333 666677777777777
Q ss_pred CCCCCccccCCCCCCCCCCCccCCeEeCCCCCCCcccccCcccCCCeEEEeccCCCCChhhhhhhcCcCCcCCCceEEec
Q 038637 694 SDAGLLEEMPKGFGKLTSLLTLGRFVVGKDSGSGLRELKSLTHLQGTLRISKLENVEDVGDACEAQLNNKVNLRTLLLDW 773 (962)
Q Consensus 694 ~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 773 (962)
++|. +..+|..+. ++|++|.. .... ........+.++++|+.|++..
T Consensus 108 s~n~-l~~l~~~~~--~~L~~L~l--------------------------~~n~----l~~~~~~~~~~l~~L~~L~l~~ 154 (330)
T 1xku_A 108 SKNQ-LKELPEKMP--KTLQELRV--------------------------HENE----ITKVRKSVFNGLNQMIVVELGT 154 (330)
T ss_dssp CSSC-CSBCCSSCC--TTCCEEEC--------------------------CSSC----CCBBCHHHHTTCTTCCEEECCS
T ss_pred CCCc-CCccChhhc--ccccEEEC--------------------------CCCc----ccccCHhHhcCCccccEEECCC
Confidence 7665 445555443 34444311 0000 0000112234455666666665
Q ss_pred cCCCCCCccchhhHHhhhccCCCCCCcCeEEEeecCCCCCCcCcCCCCCCCccEEEEeCCCCCCCCC-CCCCCCCcCeEe
Q 038637 774 SARDVQNLDQCEFETRVLSMLKPHRDVQELTIRGYGGTKFPIWLGDSSFSKLVNLKFGYCRMCTSLP-SVGQLPLLKHLK 852 (962)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L~~L~ 852 (962)
+... . ....+..+..+++|+.|+++++.+..+|..+ .++|++|++++|.+.+..| .++.+++|++|+
T Consensus 155 n~l~-----~---~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~----~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 222 (330)
T 1xku_A 155 NPLK-----S---SGIENGAFQGMKKLSYIRIADTNITTIPQGL----PPSLTELHLDGNKITKVDAASLKGLNNLAKLG 222 (330)
T ss_dssp SCCC-----G---GGBCTTGGGGCTTCCEEECCSSCCCSCCSSC----CTTCSEEECTTSCCCEECTGGGTTCTTCCEEE
T ss_pred CcCC-----c---cCcChhhccCCCCcCEEECCCCccccCCccc----cccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence 5411 0 0122334556778888888888888887755 3788999999888776544 678889999999
Q ss_pred ecCCCCceEeCc-cccCCCCCCCCCCcceeeccccccccccccccCCccccCcCCccceEeEccCCCccccCCC------
Q 038637 853 ISGMDRVKSVGL-EFYGSSCSVPFPSLETLSFSDMREWEEWISCGAGQEVDEVFPKLRKLSLFNCYKLQGTLPK------ 925 (962)
Q Consensus 853 L~~~~~~~~~~~-~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~lp~------ 925 (962)
+++|. +..++. .+.. +++|+.|+++++ .+..++. ....+++|+.|++++| .++ .+|.
T Consensus 223 Ls~n~-l~~~~~~~~~~------l~~L~~L~L~~N-~l~~lp~------~l~~l~~L~~L~l~~N-~i~-~~~~~~f~~~ 286 (330)
T 1xku_A 223 LSFNS-ISAVDNGSLAN------TPHLRELHLNNN-KLVKVPG------GLADHKYIQVVYLHNN-NIS-AIGSNDFCPP 286 (330)
T ss_dssp CCSSC-CCEECTTTGGG------STTCCEEECCSS-CCSSCCT------TTTTCSSCCEEECCSS-CCC-CCCTTSSSCS
T ss_pred CCCCc-CceeChhhccC------CCCCCEEECCCC-cCccCCh------hhccCCCcCEEECCCC-cCC-ccChhhcCCc
Confidence 98875 444433 2322 788999999886 4444422 2456789999999987 677 4542
Q ss_pred ----CCCCcceEEEccccCc-----cccCCCCCCcCEEecCCC
Q 038637 926 ----RLLLLEKLVIKSCHRL-----LVTIQCLPTLTELHTKLC 959 (962)
Q Consensus 926 ----~l~~L~~L~i~~c~~l-----~~~l~~l~~L~~L~l~~C 959 (962)
..++|+.|++.+++-. +..+..+++|+.++|+++
T Consensus 287 ~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 287 GYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred ccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 1367888999888742 245777889999999876
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.80 E-value=1.4e-19 Score=197.54 Aligned_cols=228 Identities=19% Similarity=0.241 Sum_probs=155.2
Q ss_pred CCCcCCeEeccCCCCccccccccccccCcEEeeCCCccccccchhcccCCCccEEecCCCCCccccCCCCCCCCCCCccC
Q 038637 637 NLKHLRCLNLSRTRIQILPESINSLYNLHTILLENCWELKKLCKDMGNLTKLRHLRNSDAGLLEEMPKGFGKLTSLLTLG 716 (962)
Q Consensus 637 ~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~ 716 (962)
...++++|+|++|.++.+|..++++++|++|++++| .+..+|..+..+++|++|++++|. +..+|..++.+++|++|.
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELS 156 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCC-CccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCEEE
Confidence 357899999999999999999999999999999999 666999999999999999999998 558888888888888874
Q ss_pred CeEeCCCCCCCcccccCcccCCCeEEEeccCCCCChhhhhhhcCcCCcCCCceEEeccCCCCCCccchhhHHhhhccCCC
Q 038637 717 RFVVGKDSGSGLRELKSLTHLQGTLRISKLENVEDVGDACEAQLNNKVNLRTLLLDWSARDVQNLDQCEFETRVLSMLKP 796 (962)
Q Consensus 717 ~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~ 796 (962)
........ .+- ..+.. + .....+..
T Consensus 157 L~~n~~~~-----------~~p-------------------~~~~~------~-------------------~~~~~~~~ 181 (328)
T 4fcg_A 157 IRACPELT-----------ELP-------------------EPLAS------T-------------------DASGEHQG 181 (328)
T ss_dssp EEEETTCC-----------CCC-------------------SCSEE------E-------------------C-CCCEEE
T ss_pred CCCCCCcc-----------ccC-------------------hhHhh------c-------------------cchhhhcc
Confidence 33221100 000 00000 0 00111334
Q ss_pred CCCcCeEEEeecCCCCCCcCcCCCCCCCccEEEEeCCCCCCCCCCCCCCCCcCeEeecCCCCceEeCccccCCCCCCCCC
Q 038637 797 HRDVQELTIRGYGGTKFPIWLGDSSFSKLVNLKFGYCRMCTSLPSVGQLPLLKHLKISGMDRVKSVGLEFYGSSCSVPFP 876 (962)
Q Consensus 797 ~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~ 876 (962)
+++|+.|++++|.+..+|.++. .+++|++|+|++|.+.+..+.++.+++|++|++++|+....++..+.+ ++
T Consensus 182 l~~L~~L~L~~n~l~~lp~~l~--~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~------l~ 253 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIRSLPASIA--NLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGG------RA 253 (328)
T ss_dssp STTCCEEEEEEECCCCCCGGGG--GCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTC------CC
T ss_pred CCCCCEEECcCCCcCcchHhhc--CCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcC------CC
Confidence 5667777777777777776664 677777777777776653346677777777777777666655554433 67
Q ss_pred CcceeeccccccccccccccCCccccCcCCccceEeEccCCCccccCCCC---CCCcceEEEc
Q 038637 877 SLETLSFSDMREWEEWISCGAGQEVDEVFPKLRKLSLFNCYKLQGTLPKR---LLLLEKLVIK 936 (962)
Q Consensus 877 ~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~lp~~---l~~L~~L~i~ 936 (962)
+|+.|++++|+.+..++. ..+.+++|+.|++++|+.+. .+|.. +++|+.+.+.
T Consensus 254 ~L~~L~L~~n~~~~~~p~------~~~~l~~L~~L~L~~n~~~~-~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 254 PLKRLILKDCSNLLTLPL------DIHRLTQLEKLDLRGCVNLS-RLPSLIAQLPANCIILVP 309 (328)
T ss_dssp CCCEEECTTCTTCCBCCT------TGGGCTTCCEEECTTCTTCC-CCCGGGGGSCTTCEEECC
T ss_pred CCCEEECCCCCchhhcch------hhhcCCCCCEEeCCCCCchh-hccHHHhhccCceEEeCC
Confidence 777777777665554422 24457788888888875444 67754 3444444443
No 46
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.79 E-value=5.4e-20 Score=199.74 Aligned_cols=125 Identities=18% Similarity=0.297 Sum_probs=87.8
Q ss_pred CCeeEEccCCCcccccccccc--CcchhhhCCCCcccEEEeCC-CcCcccccccccCCCcCCeEeccCCCCc-ccccccc
Q 038637 584 EHLRTFLPVNLSDYRRNYLAW--SVPHMLLNHLPRLRVFSLCG-YCNIFNLPNEIGNLKHLRCLNLSRTRIQ-ILPESIN 659 (962)
Q Consensus 584 ~~Lr~L~~~~~~~~~~~~~~~--~~~~~~l~~l~~Lr~L~L~~-~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~-~lp~~i~ 659 (962)
.+++.|.+.++. +.+ .+|. .+.++++|++|+|++ |.....+|..++++++|++|+|++|.++ .+|..+.
T Consensus 50 ~~l~~L~L~~~~------l~~~~~~~~-~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~ 122 (313)
T 1ogq_A 50 YRVNNLDLSGLN------LPKPYPIPS-SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS 122 (313)
T ss_dssp CCEEEEEEECCC------CSSCEECCG-GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGG
T ss_pred ceEEEEECCCCC------ccCCcccCh-hHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHh
Confidence 467777666542 233 3444 356788888888884 5334467777888888888888888887 7777788
Q ss_pred ccccCcEEeeCCCccccccchhcccCCCccEEecCCCCCccccCCCCCCCC-CCCcc
Q 038637 660 SLYNLHTILLENCWELKKLCKDMGNLTKLRHLRNSDAGLLEEMPKGFGKLT-SLLTL 715 (962)
Q Consensus 660 ~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~-~L~~L 715 (962)
++++|++|++++|.....+|..+..+++|++|++++|.....+|..++.++ +|++|
T Consensus 123 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L 179 (313)
T 1ogq_A 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSM 179 (313)
T ss_dssp GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEE
T ss_pred CCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEE
Confidence 888888888888844446777788888888888888775446776666665 55555
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.79 E-value=7.5e-20 Score=198.62 Aligned_cols=149 Identities=19% Similarity=0.266 Sum_probs=103.7
Q ss_pred CceeEEEEEeeccccc-cccccccCCCCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCcc-ccccccc
Q 038637 559 QTLRHFSYICREYDGK-KRLESVCDVEHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIF-NLPNEIG 636 (962)
Q Consensus 559 ~~~r~ls~~~~~~~~~-~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~-~lp~~i~ 636 (962)
..++++.+........ .....+.++++|+.|.+.+. +.+...+|.. +.++++|++|+|++| .+. .+|..++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~-----n~l~~~~p~~-l~~l~~L~~L~Ls~n-~l~~~~p~~~~ 122 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGI-----NNLVGPIPPA-IAKLTQLHYLYITHT-NVSGAIPDFLS 122 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEE-----TTEESCCCGG-GGGCTTCSEEEEEEE-CCEEECCGGGG
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCC-----CcccccCChh-HhcCCCCCEEECcCC-eeCCcCCHHHh
Confidence 4677777776544321 12345667788888877631 1233445544 577888888888888 454 6788888
Q ss_pred CCCcCCeEeccCCCCc-cccccccccccCcEEeeCCCccccccchhcccCC-CccEEecCCCCCccccCCCCCCCCCCCc
Q 038637 637 NLKHLRCLNLSRTRIQ-ILPESINSLYNLHTILLENCWELKKLCKDMGNLT-KLRHLRNSDAGLLEEMPKGFGKLTSLLT 714 (962)
Q Consensus 637 ~L~~Lr~L~Ls~~~i~-~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~-~L~~L~l~~~~~~~~~p~~i~~l~~L~~ 714 (962)
++++|++|+|++|.+. .+|..+.++++|++|++++|.....+|..+..++ +|++|++++|.....+|..++.++ |+.
T Consensus 123 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~ 201 (313)
T 1ogq_A 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAF 201 (313)
T ss_dssp GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSE
T ss_pred CCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccE
Confidence 8888888888888888 7788888888888888888844447788888887 888888888875446666665554 444
Q ss_pred c
Q 038637 715 L 715 (962)
Q Consensus 715 L 715 (962)
|
T Consensus 202 L 202 (313)
T 1ogq_A 202 V 202 (313)
T ss_dssp E
T ss_pred E
Confidence 4
No 48
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.79 E-value=1.1e-18 Score=210.31 Aligned_cols=353 Identities=19% Similarity=0.202 Sum_probs=212.4
Q ss_pred CCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCccccc-ccccCCCcCCeEeccCCCCccccc-ccccc
Q 038637 584 EHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFNLP-NEIGNLKHLRCLNLSRTRIQILPE-SINSL 661 (962)
Q Consensus 584 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~lp-~~i~~L~~Lr~L~Ls~~~i~~lp~-~i~~L 661 (962)
++++.|.+.++. + ..++...|.++++|++|+|++| .+..+| ..|.+|++|++|+|++|+++.+|. .|.+|
T Consensus 52 ~~~~~LdLs~N~------i-~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L 123 (635)
T 4g8a_A 52 FSTKNLDLSFNP------L-RHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 123 (635)
T ss_dssp TTCCEEECTTSC------C-CEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTC
T ss_pred cCCCEEEeeCCC------C-CCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCC
Confidence 368888887653 2 3566667899999999999999 788886 569999999999999999999986 57999
Q ss_pred ccCcEEeeCCCccccccch-hcccCCCccEEecCCCCCcc-ccCCCCCCCCCCCccCCeEeCCCCC---CCcccccCccc
Q 038637 662 YNLHTILLENCWELKKLCK-DMGNLTKLRHLRNSDAGLLE-EMPKGFGKLTSLLTLGRFVVGKDSG---SGLRELKSLTH 736 (962)
Q Consensus 662 ~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~-~~p~~i~~l~~L~~L~~~~~~~~~~---~~~~~l~~L~~ 736 (962)
.+|++|++++| .+..+|. .++++++|++|++++|.... ..|..++.+++|++|...... ... ..+..+.++..
T Consensus 124 ~~L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l~~L~~l~~ 201 (635)
T 4g8a_A 124 SSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPL 201 (635)
T ss_dssp TTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHHTCTT
T ss_pred CCCCEEECCCC-cCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc-ccccccccccchhhhhh
Confidence 99999999999 6777765 58999999999999998432 457778899999988432111 110 01111111110
Q ss_pred CCC-----------------------eEEEec---------------------------cCCCCChhh------------
Q 038637 737 LQG-----------------------TLRISK---------------------------LENVEDVGD------------ 754 (962)
Q Consensus 737 L~~-----------------------~L~i~~---------------------------l~~~~~~~~------------ 754 (962)
+.. .+.+.. .........
T Consensus 202 ~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l 281 (635)
T 4g8a_A 202 LNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 281 (635)
T ss_dssp CCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGS
T ss_pred hhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccch
Confidence 000 000000 000000000
Q ss_pred ---------------hhh----------------------hcCcCCcCCCceEEeccCCCCC------Cccchhh---HH
Q 038637 755 ---------------ACE----------------------AQLNNKVNLRTLLLDWSARDVQ------NLDQCEF---ET 788 (962)
Q Consensus 755 ---------------~~~----------------------~~l~~~~~L~~L~l~~~~~~~~------~~~~~~~---~~ 788 (962)
... ..+.....|+.|.+..+..... .+..... ..
T Consensus 282 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~ 361 (635)
T 4g8a_A 282 TIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKG 361 (635)
T ss_dssp EEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCS
T ss_pred hhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccC
Confidence 000 0011112334444433221000 0000000 00
Q ss_pred hhhccCCCCCCcCeEEEeecCCCC--------------------------CCcCcCCCCCCCccEEEEeCCCCCCCCC--
Q 038637 789 RVLSMLKPHRDVQELTIRGYGGTK--------------------------FPIWLGDSSFSKLVNLKFGYCRMCTSLP-- 840 (962)
Q Consensus 789 ~~~~~l~~~~~L~~L~l~~~~~~~--------------------------~p~~~~~~~l~~L~~L~L~~~~~~~~l~-- 840 (962)
........+++|+.|+++++.... .+..+ ..+++|+.+++..|......+
T Consensus 362 ~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~--~~l~~L~~l~l~~~~~~~~~~~~ 439 (635)
T 4g8a_A 362 GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNF--LGLEQLEHLDFQHSNLKQMSEFS 439 (635)
T ss_dssp CCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCC--TTCTTCCEEECTTSEEESTTSSC
T ss_pred CCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccc--cccccccchhhhhcccccccccc
Confidence 001112235677777777664421 11222 145566666666555443332
Q ss_pred CCCCCCCcCeEeecCCCCceEeCccccCCCCCCCCCCcceeeccccccccccccccCCccccCcCCccceEeEccCCCcc
Q 038637 841 SVGQLPLLKHLKISGMDRVKSVGLEFYGSSCSVPFPSLETLSFSDMREWEEWISCGAGQEVDEVFPKLRKLSLFNCYKLQ 920 (962)
Q Consensus 841 ~l~~lp~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~ 920 (962)
.+..+++|+.++++.|.. ..+..... ..+++|+.|+++++.....+.. .....+++|+.|++++| +++
T Consensus 440 ~~~~l~~l~~l~ls~n~l-~~~~~~~~-----~~~~~L~~L~Ls~N~~~~~~~~-----~~~~~l~~L~~L~Ls~N-~L~ 507 (635)
T 4g8a_A 440 VFLSLRNLIYLDISHTHT-RVAFNGIF-----NGLSSLEVLKMAGNSFQENFLP-----DIFTELRNLTFLDLSQC-QLE 507 (635)
T ss_dssp TTTTCTTCCEEECTTSCC-EECCTTTT-----TTCTTCCEEECTTCEEGGGEEC-----SCCTTCTTCCEEECTTS-CCC
T ss_pred cccccccccccccccccc-cccccccc-----ccchhhhhhhhhhcccccccCc-----hhhhhccccCEEECCCC-ccC
Confidence 456677777777776543 33322222 2288999999998765554432 23456899999999998 888
Q ss_pred ccCC---CCCCCcceEEEcccc--Cc-cccCCCCCCcCEEecCCCC
Q 038637 921 GTLP---KRLLLLEKLVIKSCH--RL-LVTIQCLPTLTELHTKLCR 960 (962)
Q Consensus 921 ~~lp---~~l~~L~~L~i~~c~--~l-~~~l~~l~~L~~L~l~~C~ 960 (962)
+..| .++++|+.|++++|. .+ +..+.++++|+.|+|+++.
T Consensus 508 ~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~ 553 (635)
T 4g8a_A 508 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 553 (635)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSC
T ss_pred CcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCc
Confidence 5445 357899999999986 22 2457889999999999874
No 49
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.78 E-value=2.3e-18 Score=188.88 Aligned_cols=97 Identities=24% Similarity=0.396 Sum_probs=61.9
Q ss_pred CcccEEEeCCCcCcccccc-cccCCCcCCeEeccCCCCccc-cccccccccCcEEeeCCCccccccchhcccCCCccEEe
Q 038637 615 PRLRVFSLCGYCNIFNLPN-EIGNLKHLRCLNLSRTRIQIL-PESINSLYNLHTILLENCWELKKLCKDMGNLTKLRHLR 692 (962)
Q Consensus 615 ~~Lr~L~L~~~~~~~~lp~-~i~~L~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 692 (962)
+.|++|+|++| .+..+|. .++++++|++|+|++|.++.+ |..++++++|++|++++| .+..+|..+. ++|++|+
T Consensus 52 ~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~--~~L~~L~ 127 (330)
T 1xku_A 52 PDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPEKMP--KTLQELR 127 (330)
T ss_dssp TTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCSSCC--TTCCEEE
T ss_pred CCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-cCCccChhhc--ccccEEE
Confidence 46677777777 5655553 567777777777777777755 566777777777777777 5666665544 6777777
Q ss_pred cCCCCCccccCCCCCCCCCCCcc
Q 038637 693 NSDAGLLEEMPKGFGKLTSLLTL 715 (962)
Q Consensus 693 l~~~~~~~~~p~~i~~l~~L~~L 715 (962)
+++|......+..++.+++|++|
T Consensus 128 l~~n~l~~~~~~~~~~l~~L~~L 150 (330)
T 1xku_A 128 VHENEITKVRKSVFNGLNQMIVV 150 (330)
T ss_dssp CCSSCCCBBCHHHHTTCTTCCEE
T ss_pred CCCCcccccCHhHhcCCccccEE
Confidence 77766322222335556666555
No 50
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.77 E-value=2.8e-18 Score=188.27 Aligned_cols=268 Identities=16% Similarity=0.153 Sum_probs=134.9
Q ss_pred CcccEEEeCCCcCccccc-ccccCCCcCCeEeccCCCCccc-cccccccccCcEEeeCCCccccccchhcccCCCccEEe
Q 038637 615 PRLRVFSLCGYCNIFNLP-NEIGNLKHLRCLNLSRTRIQIL-PESINSLYNLHTILLENCWELKKLCKDMGNLTKLRHLR 692 (962)
Q Consensus 615 ~~Lr~L~L~~~~~~~~lp-~~i~~L~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 692 (962)
++|++|+|++| .+..++ ..+.++++|++|+|++|.++.+ |..++++++|++|++++| .+..+|..+. ++|++|+
T Consensus 54 ~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~--~~L~~L~ 129 (332)
T 2ft3_A 54 PDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-HLVEIPPNLP--SSLVELR 129 (332)
T ss_dssp TTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS-CCCSCCSSCC--TTCCEEE
T ss_pred CCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC-cCCccCcccc--ccCCEEE
Confidence 56777777777 455553 5677777777777777777755 556777777777777777 5666766554 6777777
Q ss_pred cCCCCCccccCC-CCCCCCCCCccCCeEeCCCCCCCcccccCcccCCCeEEEeccCCCCChhhhhhhcCcCCcCCCceEE
Q 038637 693 NSDAGLLEEMPK-GFGKLTSLLTLGRFVVGKDSGSGLRELKSLTHLQGTLRISKLENVEDVGDACEAQLNNKVNLRTLLL 771 (962)
Q Consensus 693 l~~~~~~~~~p~-~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l 771 (962)
+++|. +..+|. .++.+++|++|...... +... ...+..+..+ +|+.|++
T Consensus 130 l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~------l~~~----------------------~~~~~~~~~l-~L~~L~l 179 (332)
T 2ft3_A 130 IHDNR-IRKVPKGVFSGLRNMNCIEMGGNP------LENS----------------------GFEPGAFDGL-KLNYLRI 179 (332)
T ss_dssp CCSSC-CCCCCSGGGSSCSSCCEEECCSCC------CBGG----------------------GSCTTSSCSC-CCSCCBC
T ss_pred CCCCc-cCccCHhHhCCCccCCEEECCCCc------cccC----------------------CCCcccccCC-ccCEEEC
Confidence 77776 444444 35666666666321110 0000 0001112222 4444444
Q ss_pred eccCCCCCCccchhhHHhhhccCCCCCCcCeEEEeecCCCCCC-cCcCCCCCCCccEEEEeCCCCCCCCC-CCCCCCCcC
Q 038637 772 DWSARDVQNLDQCEFETRVLSMLKPHRDVQELTIRGYGGTKFP-IWLGDSSFSKLVNLKFGYCRMCTSLP-SVGQLPLLK 849 (962)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p-~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L~ 849 (962)
+++... .++..+ +++|+.|++++|.+..++ ..+. .+++|+.|+|++|.+....+ .++.+++|+
T Consensus 180 ~~n~l~-----------~l~~~~--~~~L~~L~l~~n~i~~~~~~~l~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 244 (332)
T 2ft3_A 180 SEAKLT-----------GIPKDL--PETLNELHLDHNKIQAIELEDLL--RYSKLYRLGLGHNQIRMIENGSLSFLPTLR 244 (332)
T ss_dssp CSSBCS-----------SCCSSS--CSSCSCCBCCSSCCCCCCTTSST--TCTTCSCCBCCSSCCCCCCTTGGGGCTTCC
T ss_pred cCCCCC-----------ccCccc--cCCCCEEECCCCcCCccCHHHhc--CCCCCCEEECCCCcCCcCChhHhhCCCCCC
Confidence 443311 111111 145555666655555443 2332 45566666666665544333 455556666
Q ss_pred eEeecCCCCceEeCccccCCCCCCCCCCcceeeccccccccccccccCCc-cccCcCCccceEeEccCCCccccCC----
Q 038637 850 HLKISGMDRVKSVGLEFYGSSCSVPFPSLETLSFSDMREWEEWISCGAGQ-EVDEVFPKLRKLSLFNCYKLQGTLP---- 924 (962)
Q Consensus 850 ~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~-~~~~~~p~L~~L~l~~c~~L~~~lp---- 924 (962)
.|++++|. +..++..+.. +++|+.|+++++ .++.+....... .....+++|+.|++.+||-....++
T Consensus 245 ~L~L~~N~-l~~lp~~l~~------l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~ 316 (332)
T 2ft3_A 245 ELHLDNNK-LSRVPAGLPD------LKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATF 316 (332)
T ss_dssp EEECCSSC-CCBCCTTGGG------CTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGG
T ss_pred EEECCCCc-CeecChhhhc------CccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcccccccCcccc
Confidence 66665542 3344433322 556666666553 233332110000 0011245566666666643211122
Q ss_pred CCCCCcceEEEcccc
Q 038637 925 KRLLLLEKLVIKSCH 939 (962)
Q Consensus 925 ~~l~~L~~L~i~~c~ 939 (962)
..+++|+.|.+.+|.
T Consensus 317 ~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 317 RCVTDRLAIQFGNYK 331 (332)
T ss_dssp TTBCCSTTEEC----
T ss_pred cccchhhhhhccccc
Confidence 234566666665553
No 51
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.77 E-value=1.1e-17 Score=190.89 Aligned_cols=288 Identities=18% Similarity=0.162 Sum_probs=124.6
Q ss_pred CcccEEEeCCCcCcccccccccCCCcCCeEeccCCCCccccccccccccCcEEeeCCCccccccchhcccCCCccEEecC
Q 038637 615 PRLRVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLENCWELKKLCKDMGNLTKLRHLRNS 694 (962)
Q Consensus 615 ~~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 694 (962)
++|++|++++| .+..+|.. +.+|++|++++|.++.+|... ++|++|++++| .+..+| .+..+++|++|+++
T Consensus 91 ~~L~~L~l~~n-~l~~lp~~---~~~L~~L~l~~n~l~~l~~~~---~~L~~L~L~~n-~l~~lp-~~~~l~~L~~L~l~ 161 (454)
T 1jl5_A 91 PHLESLVASCN-SLTELPEL---PQSLKSLLVDNNNLKALSDLP---PLLEYLGVSNN-QLEKLP-ELQNSSFLKIIDVD 161 (454)
T ss_dssp TTCSEEECCSS-CCSSCCCC---CTTCCEEECCSSCCSCCCSCC---TTCCEEECCSS-CCSSCC-CCTTCTTCCEEECC
T ss_pred CCCCEEEccCC-cCCccccc---cCCCcEEECCCCccCcccCCC---CCCCEEECcCC-CCCCCc-ccCCCCCCCEEECC
Confidence 34555555555 34444432 244555555555555444321 45666666655 444455 35666666666666
Q ss_pred CCCCccccCCCCCCCCCCCccCCeEeCCCCCCCcccccCcccCCCeEEEeccCCCCChhhhhhhcCcCCcCCCceEEecc
Q 038637 695 DAGLLEEMPKGFGKLTSLLTLGRFVVGKDSGSGLRELKSLTHLQGTLRISKLENVEDVGDACEAQLNNKVNLRTLLLDWS 774 (962)
Q Consensus 695 ~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 774 (962)
+|. +..+|..+. +|++|..... .-..+..+.++++|+ .|.+.+..- .. ++. ...+|+.|+++++
T Consensus 162 ~N~-l~~lp~~~~---~L~~L~L~~n---~l~~l~~~~~l~~L~-~L~l~~N~l-~~----l~~---~~~~L~~L~l~~n 225 (454)
T 1jl5_A 162 NNS-LKKLPDLPP---SLEFIAAGNN---QLEELPELQNLPFLT-AIYADNNSL-KK----LPD---LPLSLESIVAGNN 225 (454)
T ss_dssp SSC-CSCCCCCCT---TCCEEECCSS---CCSSCCCCTTCTTCC-EEECCSSCC-SS----CCC---CCTTCCEEECCSS
T ss_pred CCc-CcccCCCcc---cccEEECcCC---cCCcCccccCCCCCC-EEECCCCcC-Cc----CCC---CcCcccEEECcCC
Confidence 655 334444332 3333321111 111122344444444 444432110 00 000 0124555555444
Q ss_pred CCCCCCccchhhHHhhhccCCCCCCcCeEEEeecCCCCCCcCcCCCCCCCccEEEEeCCCCCCCCCCCCCCCCcCeEeec
Q 038637 775 ARDVQNLDQCEFETRVLSMLKPHRDVQELTIRGYGGTKFPIWLGDSSFSKLVNLKFGYCRMCTSLPSVGQLPLLKHLKIS 854 (962)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~lp~L~~L~L~ 854 (962)
... .++ .+..+++|+.|++++|.+..+|.. +++|+.|++++|.+.+ +|.. +++|+.|+++
T Consensus 226 ~l~-----------~lp-~~~~l~~L~~L~l~~N~l~~l~~~-----~~~L~~L~l~~N~l~~-l~~~--~~~L~~L~ls 285 (454)
T 1jl5_A 226 ILE-----------ELP-ELQNLPFLTTIYADNNLLKTLPDL-----PPSLEALNVRDNYLTD-LPEL--PQSLTFLDVS 285 (454)
T ss_dssp CCS-----------SCC-CCTTCTTCCEEECCSSCCSSCCSC-----CTTCCEEECCSSCCSC-CCCC--CTTCCEEECC
T ss_pred cCC-----------ccc-ccCCCCCCCEEECCCCcCCccccc-----ccccCEEECCCCcccc-cCcc--cCcCCEEECc
Confidence 310 112 244555666666666555555432 2455555555555443 3321 2455555555
Q ss_pred CCCCceEeCccc--------cCC--CCCCCC-CCcceeeccccccccccccccCCccccCcCCccceEeEccCCCccccC
Q 038637 855 GMDRVKSVGLEF--------YGS--SCSVPF-PSLETLSFSDMREWEEWISCGAGQEVDEVFPKLRKLSLFNCYKLQGTL 923 (962)
Q Consensus 855 ~~~~~~~~~~~~--------~~~--~~~~~f-~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~l 923 (962)
+|. +..++... .+. .....+ ++|+.|+++++ .+..++ ..+++|+.|++++| +++ .+
T Consensus 286 ~N~-l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N-~l~~lp---------~~~~~L~~L~L~~N-~l~-~l 352 (454)
T 1jl5_A 286 ENI-FSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN-KLIELP---------ALPPRLERLIASFN-HLA-EV 352 (454)
T ss_dssp SSC-CSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSS-CCSCCC---------CCCTTCCEEECCSS-CCS-CC
T ss_pred CCc-cCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCC-cccccc---------ccCCcCCEEECCCC-ccc-cc
Confidence 543 22221000 000 000012 36666666653 233321 13577777777776 666 56
Q ss_pred CCCCCCcceEEEccccC-----ccccCCCC-------------CCcCEEecCCCC
Q 038637 924 PKRLLLLEKLVIKSCHR-----LLVTIQCL-------------PTLTELHTKLCR 960 (962)
Q Consensus 924 p~~l~~L~~L~i~~c~~-----l~~~l~~l-------------~~L~~L~l~~C~ 960 (962)
|..+++|+.|++++|.- ++..+.++ ++|+.|++++++
T Consensus 353 p~~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 353 PELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP 407 (454)
T ss_dssp CCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCC---------------------
T ss_pred cchhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc
Confidence 66667777777777652 22233333 667777777654
No 52
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.77 E-value=2.4e-18 Score=196.26 Aligned_cols=227 Identities=16% Similarity=0.108 Sum_probs=131.6
Q ss_pred CCCCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCcccccccccCCCcC-------------CeEeccC
Q 038637 582 DVEHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFNLPNEIGNLKHL-------------RCLNLSR 648 (962)
Q Consensus 582 ~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~L-------------r~L~Ls~ 648 (962)
..++||.|.+.++. + +.+|.. +.++++|++|++++|.....+|.+++++.+| ++|++++
T Consensus 9 ~~~~L~~L~l~~n~------l-~~iP~~-i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~ 80 (454)
T 1jl5_A 9 SNTFLQEPLRHSSN------L-TEMPVE-AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNN 80 (454)
T ss_dssp ---------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTT
T ss_pred ccccchhhhcccCc------h-hhCChh-HhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecC
Confidence 35778887776642 3 567765 6889999999999985445789889888875 9999999
Q ss_pred CCCccccccccccccCcEEeeCCCccccccchhcccCCCccEEecCCCCCccccCCCCCCCCCCCccCCeEeCCCCCCCc
Q 038637 649 TRIQILPESINSLYNLHTILLENCWELKKLCKDMGNLTKLRHLRNSDAGLLEEMPKGFGKLTSLLTLGRFVVGKDSGSGL 728 (962)
Q Consensus 649 ~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~ 728 (962)
|.++.+|.. .++|++|++++| .+..+|.. +++|++|++++|. +..+|... ++|++|..... .-..+
T Consensus 81 ~~l~~lp~~---~~~L~~L~l~~n-~l~~lp~~---~~~L~~L~l~~n~-l~~l~~~~---~~L~~L~L~~n---~l~~l 146 (454)
T 1jl5_A 81 LGLSSLPEL---PPHLESLVASCN-SLTELPEL---PQSLKSLLVDNNN-LKALSDLP---PLLEYLGVSNN---QLEKL 146 (454)
T ss_dssp SCCSCCCSC---CTTCSEEECCSS-CCSSCCCC---CTTCCEEECCSSC-CSCCCSCC---TTCCEEECCSS---CCSSC
T ss_pred CccccCCCC---cCCCCEEEccCC-cCCccccc---cCCCcEEECCCCc-cCcccCCC---CCCCEEECcCC---CCCCC
Confidence 999988873 478999999988 66667753 4778888888876 44444321 45555532211 11123
Q ss_pred ccccCcccCCCeEEEeccCCCCChhhhhhhcCcCCcCCCceEEeccCCCCCCccchhhHHhhhccCCCCCCcCeEEEeec
Q 038637 729 RELKSLTHLQGTLRISKLENVEDVGDACEAQLNNKVNLRTLLLDWSARDVQNLDQCEFETRVLSMLKPHRDVQELTIRGY 808 (962)
Q Consensus 729 ~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 808 (962)
..+.++++|+ .|.+.+.. +.. ++. ...+|+.|+++++... .++ .+..+++|+.|++++|
T Consensus 147 p~~~~l~~L~-~L~l~~N~-l~~----lp~---~~~~L~~L~L~~n~l~-----------~l~-~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 147 PELQNSSFLK-IIDVDNNS-LKK----LPD---LPPSLEFIAAGNNQLE-----------ELP-ELQNLPFLTAIYADNN 205 (454)
T ss_dssp CCCTTCTTCC-EEECCSSC-CSC----CCC---CCTTCCEEECCSSCCS-----------SCC-CCTTCTTCCEEECCSS
T ss_pred cccCCCCCCC-EEECCCCc-Ccc----cCC---CcccccEEECcCCcCC-----------cCc-cccCCCCCCEEECCCC
Confidence 3466666666 66665422 111 111 1236777777766521 122 4666777777777777
Q ss_pred CCCCCCcCcCCCCCCCccEEEEeCCCCCCCCCCCCCCCCcCeEeecCCC
Q 038637 809 GGTKFPIWLGDSSFSKLVNLKFGYCRMCTSLPSVGQLPLLKHLKISGMD 857 (962)
Q Consensus 809 ~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~lp~L~~L~L~~~~ 857 (962)
.+..+|... ++|++|++++|.+. .+|.++.+++|++|++++|.
T Consensus 206 ~l~~l~~~~-----~~L~~L~l~~n~l~-~lp~~~~l~~L~~L~l~~N~ 248 (454)
T 1jl5_A 206 SLKKLPDLP-----LSLESIVAGNNILE-ELPELQNLPFLTTIYADNNL 248 (454)
T ss_dssp CCSSCCCCC-----TTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSC
T ss_pred cCCcCCCCc-----CcccEEECcCCcCC-cccccCCCCCCCEEECCCCc
Confidence 776666532 46777777777655 56667777777777777653
No 53
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.76 E-value=1.9e-17 Score=194.67 Aligned_cols=71 Identities=18% Similarity=0.180 Sum_probs=35.9
Q ss_pred ccEEEeCCCcCcccccccccCCCcCCeEeccCCCCccccccccccccCcEEeeCCCccccccchhcccCCCccEEecCCC
Q 038637 617 LRVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLENCWELKKLCKDMGNLTKLRHLRNSDA 696 (962)
Q Consensus 617 Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~ 696 (962)
+++|++++| .+..+|..+. ++|++|+|++|.++.+|. .+++|++|+|++| .+..+|. .+++|++|++++|
T Consensus 42 l~~L~ls~n-~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N 111 (622)
T 3g06_A 42 NAVLNVGES-GLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGN-QLTSLPV---LPPGLLELSIFSN 111 (622)
T ss_dssp CCEEECCSS-CCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEECSC
T ss_pred CcEEEecCC-CcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECcCC
Confidence 455555555 4445554443 455555555555555554 3455555555555 3444444 4455555555555
Q ss_pred C
Q 038637 697 G 697 (962)
Q Consensus 697 ~ 697 (962)
.
T Consensus 112 ~ 112 (622)
T 3g06_A 112 P 112 (622)
T ss_dssp C
T ss_pred c
Confidence 4
No 54
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.70 E-value=1.1e-19 Score=209.48 Aligned_cols=385 Identities=15% Similarity=0.094 Sum_probs=208.8
Q ss_pred CceeEEEEEeeccccccccccccCCCCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCcccc-cccc-c
Q 038637 559 QTLRHFSYICREYDGKKRLESVCDVEHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFNL-PNEI-G 636 (962)
Q Consensus 559 ~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~l-p~~i-~ 636 (962)
...+++.+.++..........+..+++|++|.+.++. +... ........+..+++|++|+|++| .+... +..+ .
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~--~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~ 78 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG-LTEA--RCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQ 78 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSC-CCHH--HHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHH
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCC-CCHH--HHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHHHH
Confidence 3455666655433221111124567778888776653 1000 00011234567788888888887 45432 2222 2
Q ss_pred CCC----cCCeEeccCCCCc-----cccccccccccCcEEeeCCCccccccchhc-----ccCCCccEEecCCCCCcc--
Q 038637 637 NLK----HLRCLNLSRTRIQ-----ILPESINSLYNLHTILLENCWELKKLCKDM-----GNLTKLRHLRNSDAGLLE-- 700 (962)
Q Consensus 637 ~L~----~Lr~L~Ls~~~i~-----~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i-----~~L~~L~~L~l~~~~~~~-- 700 (962)
.+. +|++|+|++|.+. .+|..+.++++|++|++++|......+..+ ...++|++|++++|....
T Consensus 79 ~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 158 (461)
T 1z7x_W 79 GLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS 158 (461)
T ss_dssp TTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred HHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH
Confidence 344 6888888888877 467778888888888888884222222222 235678888888886432
Q ss_pred --ccCCCCCCCCCCCccCCeEeCCCCCCCccccc-----CcccCCCeEEEeccCCCCChhhhhhhcCcCCcCCCceEEec
Q 038637 701 --EMPKGFGKLTSLLTLGRFVVGKDSGSGLRELK-----SLTHLQGTLRISKLENVEDVGDACEAQLNNKVNLRTLLLDW 773 (962)
Q Consensus 701 --~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~-----~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 773 (962)
.++..+..+++|++|...... .....+..+. .+++|+ .|.+.+..-.......+...+..+++|+.|++++
T Consensus 159 ~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~-~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 236 (461)
T 1z7x_W 159 CEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLE-ALKLESCGVTSDNCRDLCGIVASKASLRELALGS 236 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCC-EEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCce-EEEccCCCCcHHHHHHHHHHHHhCCCccEEeccC
Confidence 234445566777776332111 1111111111 233565 6666554322222223455566778888888887
Q ss_pred cCCCCCCccchhhHHhhhccCCCCCCcCeEEEeecCCCC-----CCcCcCCCCCCCccEEEEeCCCCCCC----CC--CC
Q 038637 774 SARDVQNLDQCEFETRVLSMLKPHRDVQELTIRGYGGTK-----FPIWLGDSSFSKLVNLKFGYCRMCTS----LP--SV 842 (962)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----~p~~~~~~~l~~L~~L~L~~~~~~~~----l~--~l 842 (962)
+. +..............++++|+.|++++|.+.. +|..+. .+++|++|+|++|.+.+. +. ..
T Consensus 237 n~-----l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~--~~~~L~~L~Ls~n~i~~~~~~~l~~~l~ 309 (461)
T 1z7x_W 237 NK-----LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR--AKESLKELSLAGNELGDEGARLLCETLL 309 (461)
T ss_dssp SB-----CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH--HCTTCCEEECTTCCCHHHHHHHHHHHHT
T ss_pred Cc-----CChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHh--hCCCcceEECCCCCCchHHHHHHHHHhc
Confidence 65 21111111112223457788888888887664 455443 578888888888876432 11 11
Q ss_pred CCCCCcCeEeecCCCCceEeCccccCCCCCCCCCCcceeeccccccccccccccCCccccCcCCccceEeEccCCCccc-
Q 038637 843 GQLPLLKHLKISGMDRVKSVGLEFYGSSCSVPFPSLETLSFSDMREWEEWISCGAGQEVDEVFPKLRKLSLFNCYKLQG- 921 (962)
Q Consensus 843 ~~lp~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~- 921 (962)
...++|++|++++|.. ...+...... ....+++|+.|+++++ .+.+..............++|+.|++++| .+++
T Consensus 310 ~~~~~L~~L~L~~n~l-~~~~~~~l~~-~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~ 385 (461)
T 1z7x_W 310 EPGCQLESLWVKSCSF-TAACCSHFSS-VLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDS 385 (461)
T ss_dssp STTCCCCEEECTTSCC-BGGGHHHHHH-HHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHH
T ss_pred cCCccceeeEcCCCCC-chHHHHHHHH-HHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCC-CCChh
Confidence 2346888888888752 2211000000 0011588888888886 34332110000000112678888888888 6663
Q ss_pred ---cCCC---CCCCcceEEEccccCccc-------cCC-CCCCcCEEecCCCC
Q 038637 922 ---TLPK---RLLLLEKLVIKSCHRLLV-------TIQ-CLPTLTELHTKLCR 960 (962)
Q Consensus 922 ---~lp~---~l~~L~~L~i~~c~~l~~-------~l~-~l~~L~~L~l~~C~ 960 (962)
.+|. .+++|+.|++++|+--.. .++ ..++|+.|.+.++.
T Consensus 386 ~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 386 SCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIY 438 (461)
T ss_dssp HHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred hHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccc
Confidence 3442 467888888888862211 222 24567777776653
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.70 E-value=4.1e-17 Score=176.77 Aligned_cols=224 Identities=20% Similarity=0.180 Sum_probs=143.9
Q ss_pred CCcccEEEeCCCcCccccccc-ccCCCcCCeEeccCCCCccc---cccccccccCcEEeeCCCccccccchhcccCCCcc
Q 038637 614 LPRLRVFSLCGYCNIFNLPNE-IGNLKHLRCLNLSRTRIQIL---PESINSLYNLHTILLENCWELKKLCKDMGNLTKLR 689 (962)
Q Consensus 614 l~~Lr~L~L~~~~~~~~lp~~-i~~L~~Lr~L~Ls~~~i~~l---p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 689 (962)
.++|++|+|++| .+..+|.. +.++++|++|+|++|.++.+ |..+..+++|++|++++| .+..+|..+..+++|+
T Consensus 27 ~~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~l~~~~~~l~~L~ 104 (306)
T 2z66_A 27 PSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLE 104 (306)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC-SEEEEEEEEETCTTCC
T ss_pred CCCCCEEECCCC-ccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC-ccccChhhcCCCCCCC
Confidence 367999999998 68888754 68999999999999998855 677778999999999999 7778888899999999
Q ss_pred EEecCCCCCccccCC--CCCCCCCCCccCCeEeCCCCCCCcccccCcccCCCeEEEeccCCCCChhhhhhhcCcCCcCCC
Q 038637 690 HLRNSDAGLLEEMPK--GFGKLTSLLTLGRFVVGKDSGSGLRELKSLTHLQGTLRISKLENVEDVGDACEAQLNNKVNLR 767 (962)
Q Consensus 690 ~L~l~~~~~~~~~p~--~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~ 767 (962)
+|++++|. +..++. .+..+++|++|.. .... ........+..+++|+
T Consensus 105 ~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l--------------------------~~n~----l~~~~~~~~~~l~~L~ 153 (306)
T 2z66_A 105 HLDFQHSN-LKQMSEFSVFLSLRNLIYLDI--------------------------SHTH----TRVAFNGIFNGLSSLE 153 (306)
T ss_dssp EEECTTSE-EESSTTTTTTTTCTTCCEEEC--------------------------TTSC----CEECSTTTTTTCTTCC
T ss_pred EEECCCCc-ccccccchhhhhccCCCEEEC--------------------------CCCc----CCccchhhcccCcCCC
Confidence 99999987 444443 4556666555521 1100 0011122344556666
Q ss_pred ceEEeccCCCCCCccchhhHHhhhccCCCCCCcCeEEEeecCCCCC-CcCcCCCCCCCccEEEEeCCCCCCCCC-CCCCC
Q 038637 768 TLLLDWSARDVQNLDQCEFETRVLSMLKPHRDVQELTIRGYGGTKF-PIWLGDSSFSKLVNLKFGYCRMCTSLP-SVGQL 845 (962)
Q Consensus 768 ~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l 845 (962)
.|.+.++... ....+..+..+++|+.|++++|.+..+ |.++. .+++|+.|+|++|.+....+ .+..+
T Consensus 154 ~L~l~~n~l~---------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l 222 (306)
T 2z66_A 154 VLKMAGNSFQ---------ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN--SLSSLQVLNMSHNNFFSLDTFPYKCL 222 (306)
T ss_dssp EEECTTCEEG---------GGEECSCCTTCTTCCEEECTTSCCCEECTTTTT--TCTTCCEEECTTSCCSBCCSGGGTTC
T ss_pred EEECCCCccc---------cccchhHHhhCcCCCEEECCCCCcCCcCHHHhc--CCCCCCEEECCCCccCccChhhccCc
Confidence 6666655410 012345566667777777777766655 44443 56677777777776554333 45666
Q ss_pred CCcCeEeecCCCCceEeCccccCCCCCCCC-CCcceeeccccc
Q 038637 846 PLLKHLKISGMDRVKSVGLEFYGSSCSVPF-PSLETLSFSDMR 887 (962)
Q Consensus 846 p~L~~L~L~~~~~~~~~~~~~~~~~~~~~f-~~L~~L~l~~~~ 887 (962)
++|++|++++|......+..+.. + ++|+.|++++++
T Consensus 223 ~~L~~L~L~~N~l~~~~~~~~~~------~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 223 NSLQVLDYSLNHIMTSKKQELQH------FPSSLAFLNLTQND 259 (306)
T ss_dssp TTCCEEECTTSCCCBCSSSSCCC------CCTTCCEEECTTCC
T ss_pred ccCCEeECCCCCCcccCHHHHHh------hhccCCEEEccCCC
Confidence 77777777766433222222221 4 366666666643
No 56
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.70 E-value=3.4e-18 Score=203.95 Aligned_cols=345 Identities=14% Similarity=0.071 Sum_probs=197.3
Q ss_pred CeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCccc-----ccccccCCCcCCeEeccCCCCc-----cc
Q 038637 585 HLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFN-----LPNEIGNLKHLRCLNLSRTRIQ-----IL 654 (962)
Q Consensus 585 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~-----lp~~i~~L~~Lr~L~Ls~~~i~-----~l 654 (962)
+|+.|.+.++.. +.......+..++++|++|+|++| .+.. ++..+..+++|++|+|++|.++ .+
T Consensus 139 ~L~~L~L~~~~~-----~~~~~l~~~~~~~~~L~~L~L~~~-~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l 212 (592)
T 3ogk_B 139 DLETLKLDKCSG-----FTTDGLLSIVTHCRKIKTLLMEES-SFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDL 212 (592)
T ss_dssp GCCEEEEESCEE-----EEHHHHHHHHHHCTTCSEEECTTC-EEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHH
T ss_pred cCcEEECcCCCC-----cCHHHHHHHHhhCCCCCEEECccc-cccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHH
Confidence 378887766531 111112233456888888888888 3322 3334557788888888888875 45
Q ss_pred cccccccccCcEEeeCCCccccccchhcccCCCccEEecCCCCCc---cccCCCCCCCCCCCccCCeEeCCCCC-CCccc
Q 038637 655 PESINSLYNLHTILLENCWELKKLCKDMGNLTKLRHLRNSDAGLL---EEMPKGFGKLTSLLTLGRFVVGKDSG-SGLRE 730 (962)
Q Consensus 655 p~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~---~~~p~~i~~l~~L~~L~~~~~~~~~~-~~~~~ 730 (962)
+..+.++++|++|++++| .+..+|..+..+++|++|+++.+... ...+..++.+++|+.|. ...... .....
T Consensus 213 ~~~~~~~~~L~~L~L~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~---l~~~~~~~l~~~ 288 (592)
T 3ogk_B 213 ETIARNCRSLVSVKVGDF-EILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLG---LSYMGPNEMPIL 288 (592)
T ss_dssp HHHHHHCTTCCEEECSSC-BGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEE---ETTCCTTTGGGG
T ss_pred HHHHhhCCCCcEEeccCc-cHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccC---ccccchhHHHHH
Confidence 566678888999988888 66678888888888888888753322 22334456666666652 221111 12233
Q ss_pred ccCcccCCCeEEEeccCCCCChhhhhhhcCcCCcCCCceEEeccCCCCCCccchhhHHhhhccCCCCCCcCeEEEee---
Q 038637 731 LKSLTHLQGTLRISKLENVEDVGDACEAQLNNKVNLRTLLLDWSARDVQNLDQCEFETRVLSMLKPHRDVQELTIRG--- 807 (962)
Q Consensus 731 l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~--- 807 (962)
+..+++|+ .|.+.... + ........+..+++|+.|.+..+. ...........+++|++|++++
T Consensus 289 ~~~~~~L~-~L~Ls~~~-l--~~~~~~~~~~~~~~L~~L~L~~~~----------~~~~l~~~~~~~~~L~~L~L~~g~~ 354 (592)
T 3ogk_B 289 FPFAAQIR-KLDLLYAL-L--ETEDHCTLIQKCPNLEVLETRNVI----------GDRGLEVLAQYCKQLKRLRIERGAD 354 (592)
T ss_dssp GGGGGGCC-EEEETTCC-C--CHHHHHHHHTTCTTCCEEEEEGGG----------HHHHHHHHHHHCTTCCEEEEECCCC
T ss_pred HhhcCCCc-EEecCCCc-C--CHHHHHHHHHhCcCCCEEeccCcc----------CHHHHHHHHHhCCCCCEEEeecCcc
Confidence 45566777 77776544 2 122333445677888888887322 0112222234467788888883
Q ss_pred -------c-CCCC--CCcCcCCCCCCCccEEEEeCCCCCCCC-CCCCC-CCCcCeEeecC---CCCceEeCccccCCCCC
Q 038637 808 -------Y-GGTK--FPIWLGDSSFSKLVNLKFGYCRMCTSL-PSVGQ-LPLLKHLKISG---MDRVKSVGLEFYGSSCS 872 (962)
Q Consensus 808 -------~-~~~~--~p~~~~~~~l~~L~~L~L~~~~~~~~l-~~l~~-lp~L~~L~L~~---~~~~~~~~~~~~~~~~~ 872 (962)
+ .... ++... ..+++|++|++..+.+.+.. ..++. +|+|+.|++.+ |+.+...+.+-.-....
T Consensus 355 ~~~~~~~~~~~~~~~~~~l~--~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~ 432 (592)
T 3ogk_B 355 EQGMEDEEGLVSQRGLIALA--QGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLL 432 (592)
T ss_dssp SSTTSSTTCCCCHHHHHHHH--HHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHH
T ss_pred ccccccccCccCHHHHHHHH--hhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHH
Confidence 2 2210 11111 14778888888666554322 23433 77888888873 33444321110000001
Q ss_pred CCCCCcceeecccccc-ccccccccCCccccCcCCccceEeEccCCCccc-cCC---CCCCCcceEEEccccCc----cc
Q 038637 873 VPFPSLETLSFSDMRE-WEEWISCGAGQEVDEVFPKLRKLSLFNCYKLQG-TLP---KRLLLLEKLVIKSCHRL----LV 943 (962)
Q Consensus 873 ~~f~~L~~L~l~~~~~-l~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~-~lp---~~l~~L~~L~i~~c~~l----~~ 943 (962)
..+++|+.|+++.|.+ +..... ......+|+|+.|++++| ++++ .++ .++++|+.|+|++|+-- ..
T Consensus 433 ~~~~~L~~L~L~~~~~~l~~~~~----~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 507 (592)
T 3ogk_B 433 IGCKKLRRFAFYLRQGGLTDLGL----SYIGQYSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAA 507 (592)
T ss_dssp HHCTTCCEEEEECCGGGCCHHHH----HHHHHSCTTCCEEEECSC-CSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHH
T ss_pred HhCCCCCEEEEecCCCCccHHHH----HHHHHhCccceEeeccCC-CCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHH
Confidence 1277888888865442 221111 011123678888888877 4543 122 56778888888888711 12
Q ss_pred cCCCCCCcCEEecCCCC
Q 038637 944 TIQCLPTLTELHTKLCR 960 (962)
Q Consensus 944 ~l~~l~~L~~L~l~~C~ 960 (962)
.+..+++|++|+|++|+
T Consensus 508 ~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 508 AVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHHHCSSCCEEEEESCB
T ss_pred HHHhcCccCeeECcCCc
Confidence 23457888888888875
No 57
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.70 E-value=1.8e-16 Score=181.70 Aligned_cols=221 Identities=23% Similarity=0.294 Sum_probs=157.3
Q ss_pred CcccEEEeCCCcCcccc-cccccCCCcCCeEeccCCCCcccc-ccccccccCcEEeeCCCccccccchh-cccCCCccEE
Q 038637 615 PRLRVFSLCGYCNIFNL-PNEIGNLKHLRCLNLSRTRIQILP-ESINSLYNLHTILLENCWELKKLCKD-MGNLTKLRHL 691 (962)
Q Consensus 615 ~~Lr~L~L~~~~~~~~l-p~~i~~L~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L 691 (962)
++|++|+|++| .+..+ |..|.++++|++|+|++|.++.++ ..+.++++|++|+|++| .+..+|.. +..+++|++|
T Consensus 75 ~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 152 (452)
T 3zyi_A 75 SNTRYLNLMEN-NIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN-WLTVIPSGAFEYLSKLREL 152 (452)
T ss_dssp TTCSEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSBCCTTTSSSCTTCCEE
T ss_pred CCccEEECcCC-cCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC-cCCccChhhhcccCCCCEE
Confidence 57889999988 56665 577889999999999999888665 57888999999999988 56666654 7888999999
Q ss_pred ecCCCCCccccCC-CCCCCCCCCccCCeEeCCCCCCCcccccCcccCCCeEEEeccCCCCChhhhhhhcCcCCcCCCceE
Q 038637 692 RNSDAGLLEEMPK-GFGKLTSLLTLGRFVVGKDSGSGLRELKSLTHLQGTLRISKLENVEDVGDACEAQLNNKVNLRTLL 770 (962)
Q Consensus 692 ~l~~~~~~~~~p~-~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~ 770 (962)
++++|. +..+|. .+..+++|+.|.... ...+. .+ ....+.++++|+.|+
T Consensus 153 ~L~~N~-l~~~~~~~~~~l~~L~~L~l~~--------------~~~l~-~i--------------~~~~~~~l~~L~~L~ 202 (452)
T 3zyi_A 153 WLRNNP-IESIPSYAFNRVPSLMRLDLGE--------------LKKLE-YI--------------SEGAFEGLFNLKYLN 202 (452)
T ss_dssp ECCSCC-CCEECTTTTTTCTTCCEEECCC--------------CTTCC-EE--------------CTTTTTTCTTCCEEE
T ss_pred ECCCCC-cceeCHhHHhcCCcccEEeCCC--------------CCCcc-cc--------------ChhhccCCCCCCEEE
Confidence 999887 445554 566777776663211 11111 00 012345667788888
Q ss_pred EeccCCCCCCccchhhHHhhhccCCCCCCcCeEEEeecCCCCC-CcCcCCCCCCCccEEEEeCCCCCCCCC-CCCCCCCc
Q 038637 771 LDWSARDVQNLDQCEFETRVLSMLKPHRDVQELTIRGYGGTKF-PIWLGDSSFSKLVNLKFGYCRMCTSLP-SVGQLPLL 848 (962)
Q Consensus 771 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L 848 (962)
++++... . ...+..+++|+.|++++|.+..+ |.++. .+++|+.|+|++|.+....+ .+..+++|
T Consensus 203 L~~n~l~-----------~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 268 (452)
T 3zyi_A 203 LGMCNIK-----------D-MPNLTPLVGLEELEMSGNHFPEIRPGSFH--GLSSLKKLWVMNSQVSLIERNAFDGLASL 268 (452)
T ss_dssp CTTSCCS-----------S-CCCCTTCTTCCEEECTTSCCSEECGGGGT--TCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred CCCCccc-----------c-cccccccccccEEECcCCcCcccCccccc--CccCCCEEEeCCCcCceECHHHhcCCCCC
Confidence 7776521 1 12466788899999999887766 45554 78899999999988776544 67888999
Q ss_pred CeEeecCCCCceEeCccccCCCCCCCCCCcceeeccccc
Q 038637 849 KHLKISGMDRVKSVGLEFYGSSCSVPFPSLETLSFSDMR 887 (962)
Q Consensus 849 ~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~ 887 (962)
+.|+|++|. +..++...... +++|+.|+|++++
T Consensus 269 ~~L~L~~N~-l~~~~~~~~~~-----l~~L~~L~L~~Np 301 (452)
T 3zyi_A 269 VELNLAHNN-LSSLPHDLFTP-----LRYLVELHLHHNP 301 (452)
T ss_dssp CEEECCSSC-CSCCCTTSSTT-----CTTCCEEECCSSC
T ss_pred CEEECCCCc-CCccChHHhcc-----ccCCCEEEccCCC
Confidence 999998874 45555443332 7889999998865
No 58
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.69 E-value=4e-16 Score=183.31 Aligned_cols=101 Identities=20% Similarity=0.090 Sum_probs=59.0
Q ss_pred CCcCeEEEeecCCCCCCcCcCCCCCCCccEEEEeCCCCCCCCCCCCCCCCcCeEeecCCCCceEeCccccCCCCCCCCCC
Q 038637 798 RDVQELTIRGYGGTKFPIWLGDSSFSKLVNLKFGYCRMCTSLPSVGQLPLLKHLKISGMDRVKSVGLEFYGSSCSVPFPS 877 (962)
Q Consensus 798 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~ 877 (962)
++|+.|.+++|.+..+|. .+++|+.|+|++|.+.. +| ..+++|+.|++++|. +..++. .+++
T Consensus 201 ~~L~~L~L~~N~l~~l~~-----~~~~L~~L~Ls~N~L~~-lp--~~l~~L~~L~Ls~N~-L~~lp~---------~~~~ 262 (622)
T 3g06_A 201 SELYKLWAYNNRLTSLPA-----LPSGLKELIVSGNRLTS-LP--VLPSELKELMVSGNR-LTSLPM---------LPSG 262 (622)
T ss_dssp TTCCEEECCSSCCSSCCC-----CCTTCCEEECCSSCCSC-CC--CCCTTCCEEECCSSC-CSCCCC---------CCTT
T ss_pred chhhEEECcCCcccccCC-----CCCCCCEEEccCCccCc-CC--CCCCcCcEEECCCCC-CCcCCc---------cccc
Confidence 567777777776666664 23567777777775543 44 455677777777653 333432 1567
Q ss_pred cceeeccccccccccccccCCccccCcCCccceEeEccCCCccccCC
Q 038637 878 LETLSFSDMREWEEWISCGAGQEVDEVFPKLRKLSLFNCYKLQGTLP 924 (962)
Q Consensus 878 L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~lp 924 (962)
|+.|+|++| .+..++. ....+++|+.|++++| .+++..|
T Consensus 263 L~~L~Ls~N-~L~~lp~------~l~~l~~L~~L~L~~N-~l~~~~~ 301 (622)
T 3g06_A 263 LLSLSVYRN-QLTRLPE------SLIHLSSETTVNLEGN-PLSERTL 301 (622)
T ss_dssp CCEEECCSS-CCCSCCG------GGGGSCTTCEEECCSC-CCCHHHH
T ss_pred CcEEeCCCC-CCCcCCH------HHhhccccCEEEecCC-CCCCcCH
Confidence 777777764 3443321 2345677777777776 4543333
No 59
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.69 E-value=7.9e-17 Score=174.52 Aligned_cols=225 Identities=18% Similarity=0.147 Sum_probs=172.6
Q ss_pred CCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCcccc---cccccCCCcCCeEeccCCCCccccccccc
Q 038637 584 EHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFNL---PNEIGNLKHLRCLNLSRTRIQILPESINS 660 (962)
Q Consensus 584 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~l---p~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~ 660 (962)
++++.|.+.++. + ..++...|.++++|++|+|++| .+..+ |..+..+.+|++|+|++|.+..+|..+..
T Consensus 28 ~~l~~L~L~~n~------l-~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~ 99 (306)
T 2z66_A 28 SSATRLELESNK------L-QSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG 99 (306)
T ss_dssp TTCCEEECCSSC------C-CCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEET
T ss_pred CCCCEEECCCCc------c-CccCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEECCCCccccChhhcCC
Confidence 578888877653 2 3567777889999999999999 56554 56777899999999999999999999999
Q ss_pred cccCcEEeeCCCccccccch--hcccCCCccEEecCCCCCccccCCCCCCCCCCCccCCeEeCCCCCCCcccccCcccCC
Q 038637 661 LYNLHTILLENCWELKKLCK--DMGNLTKLRHLRNSDAGLLEEMPKGFGKLTSLLTLGRFVVGKDSGSGLRELKSLTHLQ 738 (962)
Q Consensus 661 L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~ 738 (962)
+++|++|++++| .+..+|. .+..+++|++|++++|......|..++.+++|++|..... . +.
T Consensus 100 l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n------~---------l~ 163 (306)
T 2z66_A 100 LEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN------S---------FQ 163 (306)
T ss_dssp CTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTC------E---------EG
T ss_pred CCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCC------c---------cc
Confidence 999999999999 6776664 6889999999999999855555666777777777632100 0 00
Q ss_pred CeEEEeccCCCCChhhhhhhcCcCCcCCCceEEeccCCCCCCccchhhHHhhhccCCCCCCcCeEEEeecCCCCCCcCcC
Q 038637 739 GTLRISKLENVEDVGDACEAQLNNKVNLRTLLLDWSARDVQNLDQCEFETRVLSMLKPHRDVQELTIRGYGGTKFPIWLG 818 (962)
Q Consensus 739 ~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~ 818 (962)
....+..+..+++|+.|+++++... ...+..+..+++|+.|++++|.+..++....
T Consensus 164 --------------~~~~~~~~~~l~~L~~L~Ls~n~l~----------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 219 (306)
T 2z66_A 164 --------------ENFLPDIFTELRNLTFLDLSQCQLE----------QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY 219 (306)
T ss_dssp --------------GGEECSCCTTCTTCCEEECTTSCCC----------EECTTTTTTCTTCCEEECTTSCCSBCCSGGG
T ss_pred --------------cccchhHHhhCcCCCEEECCCCCcC----------CcCHHHhcCCCCCCEEECCCCccCccChhhc
Confidence 0012334566778888888877621 2234567788999999999999887765322
Q ss_pred CCCCCCccEEEEeCCCCCCCCC-CCCCCC-CcCeEeecCCC
Q 038637 819 DSSFSKLVNLKFGYCRMCTSLP-SVGQLP-LLKHLKISGMD 857 (962)
Q Consensus 819 ~~~l~~L~~L~L~~~~~~~~l~-~l~~lp-~L~~L~L~~~~ 857 (962)
..+++|+.|+|++|.+.+..| .+..+| +|++|++++|+
T Consensus 220 -~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 220 -KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp -TTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred -cCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 378999999999999887666 678885 99999999876
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.69 E-value=4.6e-18 Score=185.04 Aligned_cols=257 Identities=12% Similarity=0.101 Sum_probs=175.5
Q ss_pred cchhhhCCCCcccEEEeCCCcCccccc-ccccCCCcCCeEeccCCCCccccccccccccCcEEeeCCCccccccchhccc
Q 038637 606 VPHMLLNHLPRLRVFSLCGYCNIFNLP-NEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLENCWELKKLCKDMGN 684 (962)
Q Consensus 606 ~~~~~l~~l~~Lr~L~L~~~~~~~~lp-~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~ 684 (962)
.+...+..+++|++|+|++| .+..++ ..++++++|++|+|++|.++.++. +..+++|++|++++| .+..+| .
T Consensus 25 ~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n-~l~~l~----~ 97 (317)
T 3o53_A 25 ALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELL----V 97 (317)
T ss_dssp HHHHHHTTGGGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSS-EEEEEE----E
T ss_pred hHHHHhccCCCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCC-cccccc----C
Confidence 34455677888999999998 566664 678899999999999999987765 888999999999998 666665 3
Q ss_pred CCCccEEecCCCCCccccCCCCCCCCCCCccCCeEeCCCCCCCcccccCcccCCCeEEEeccCCCCChhhhhhhcCcCCc
Q 038637 685 LTKLRHLRNSDAGLLEEMPKGFGKLTSLLTLGRFVVGKDSGSGLRELKSLTHLQGTLRISKLENVEDVGDACEAQLNNKV 764 (962)
Q Consensus 685 L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~ 764 (962)
.++|++|++++|. +..++.. .+++|++|. +.+.. ........+..++
T Consensus 98 ~~~L~~L~l~~n~-l~~~~~~--~~~~L~~L~--------------------------l~~N~----l~~~~~~~~~~l~ 144 (317)
T 3o53_A 98 GPSIETLHAANNN-ISRVSCS--RGQGKKNIY--------------------------LANNK----ITMLRDLDEGCRS 144 (317)
T ss_dssp CTTCCEEECCSSC-CSEEEEC--CCSSCEEEE--------------------------CCSSC----CCSGGGBCTGGGS
T ss_pred CCCcCEEECCCCc-cCCcCcc--ccCCCCEEE--------------------------CCCCC----CCCccchhhhccC
Confidence 4889999999887 4444322 234444442 11100 0011122344566
Q ss_pred CCCceEEeccCCCCCCccchhhHHhhhccC-CCCCCcCeEEEeecCCCCCCcCcCCCCCCCccEEEEeCCCCCCCCCCCC
Q 038637 765 NLRTLLLDWSARDVQNLDQCEFETRVLSML-KPHRDVQELTIRGYGGTKFPIWLGDSSFSKLVNLKFGYCRMCTSLPSVG 843 (962)
Q Consensus 765 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~ 843 (962)
+|+.|+++++... ...+..+ ..+++|+.|++++|.+..+|... .+++|+.|+|++|.+....+.+.
T Consensus 145 ~L~~L~Ls~N~l~----------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~---~l~~L~~L~Ls~N~l~~l~~~~~ 211 (317)
T 3o53_A 145 RVQYLDLKLNEID----------TVNFAELAASSDTLEHLNLQYNFIYDVKGQV---VFAKLKTLDLSSNKLAFMGPEFQ 211 (317)
T ss_dssp SEEEEECTTSCCC----------EEEGGGGGGGTTTCCEEECTTSCCCEEECCC---CCTTCCEEECCSSCCCEECGGGG
T ss_pred CCCEEECCCCCCC----------cccHHHHhhccCcCCEEECCCCcCccccccc---ccccCCEEECCCCcCCcchhhhc
Confidence 7777877776521 1112222 24678999999998888776554 48899999999998776555788
Q ss_pred CCCCcCeEeecCCCCceEeCccccCCCCCCCCCCcceeeccccccccccccccCCccccCcCCccceEeEccCCCccccC
Q 038637 844 QLPLLKHLKISGMDRVKSVGLEFYGSSCSVPFPSLETLSFSDMREWEEWISCGAGQEVDEVFPKLRKLSLFNCYKLQGTL 923 (962)
Q Consensus 844 ~lp~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~l 923 (962)
.+++|+.|++++|. +..++..+.. +++|+.|++++++-...+. ......+|+|+.|++.+|+.+++..
T Consensus 212 ~l~~L~~L~L~~N~-l~~l~~~~~~------l~~L~~L~l~~N~~~~~~~-----~~~~~~~~~L~~l~l~~~~~l~~~~ 279 (317)
T 3o53_A 212 SAAGVTWISLRNNK-LVLIEKALRF------SQNLEHFDLRGNGFHCGTL-----RDFFSKNQRVQTVAKQTVKKLTGQN 279 (317)
T ss_dssp GGTTCSEEECTTSC-CCEECTTCCC------CTTCCEEECTTCCCBHHHH-----HHHHHTCHHHHHHHHHHHHHHHSSS
T ss_pred ccCcccEEECcCCc-ccchhhHhhc------CCCCCEEEccCCCccCcCH-----HHHHhccccceEEECCCchhccCCc
Confidence 88999999999874 5566655433 7899999999865331211 1223468889999998888887655
Q ss_pred CCCC
Q 038637 924 PKRL 927 (962)
Q Consensus 924 p~~l 927 (962)
|..+
T Consensus 280 ~~~~ 283 (317)
T 3o53_A 280 EEEC 283 (317)
T ss_dssp SCCC
T ss_pred hhcc
Confidence 5444
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.69 E-value=4.5e-16 Score=177.76 Aligned_cols=221 Identities=22% Similarity=0.294 Sum_probs=157.5
Q ss_pred CcccEEEeCCCcCccccc-ccccCCCcCCeEeccCCCCcccc-ccccccccCcEEeeCCCccccccch-hcccCCCccEE
Q 038637 615 PRLRVFSLCGYCNIFNLP-NEIGNLKHLRCLNLSRTRIQILP-ESINSLYNLHTILLENCWELKKLCK-DMGNLTKLRHL 691 (962)
Q Consensus 615 ~~Lr~L~L~~~~~~~~lp-~~i~~L~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L 691 (962)
+++++|+|++| .+..++ ..|.++++|++|+|++|.++.++ ..+.++++|++|+|++| .+..+|. .+..+++|++|
T Consensus 64 ~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 141 (440)
T 3zyj_A 64 TNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN-RLTTIPNGAFVYLSKLKEL 141 (440)
T ss_dssp TTCSEEECCSC-CCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS-CCSSCCTTTSCSCSSCCEE
T ss_pred CCCcEEEccCC-cCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC-cCCeeCHhHhhccccCcee
Confidence 57888999988 566664 67889999999999999988766 56888999999999988 6667765 57888999999
Q ss_pred ecCCCCCccccCC-CCCCCCCCCccCCeEeCCCCCCCcccccCcccCCCeEEEeccCCCCChhhhhhhcCcCCcCCCceE
Q 038637 692 RNSDAGLLEEMPK-GFGKLTSLLTLGRFVVGKDSGSGLRELKSLTHLQGTLRISKLENVEDVGDACEAQLNNKVNLRTLL 770 (962)
Q Consensus 692 ~l~~~~~~~~~p~-~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~ 770 (962)
++++|. +..+|. .+..+++|++|.... ...+. . .....+.++++|+.|+
T Consensus 142 ~L~~N~-i~~~~~~~~~~l~~L~~L~l~~--------------~~~l~-~--------------i~~~~~~~l~~L~~L~ 191 (440)
T 3zyj_A 142 WLRNNP-IESIPSYAFNRIPSLRRLDLGE--------------LKRLS-Y--------------ISEGAFEGLSNLRYLN 191 (440)
T ss_dssp ECCSCC-CCEECTTTTTTCTTCCEEECCC--------------CTTCC-E--------------ECTTTTTTCSSCCEEE
T ss_pred eCCCCc-ccccCHHHhhhCcccCEeCCCC--------------CCCcc-e--------------eCcchhhcccccCeec
Confidence 999887 444443 566777776663211 01111 0 0112345667788888
Q ss_pred EeccCCCCCCccchhhHHhhhccCCCCCCcCeEEEeecCCCCC-CcCcCCCCCCCccEEEEeCCCCCCCCC-CCCCCCCc
Q 038637 771 LDWSARDVQNLDQCEFETRVLSMLKPHRDVQELTIRGYGGTKF-PIWLGDSSFSKLVNLKFGYCRMCTSLP-SVGQLPLL 848 (962)
Q Consensus 771 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L 848 (962)
++++... . ...+..+++|+.|++++|.+..+ |..+. .+++|+.|+|++|.+....+ .+..+++|
T Consensus 192 L~~n~l~-----------~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 257 (440)
T 3zyj_A 192 LAMCNLR-----------E-IPNLTPLIKLDELDLSGNHLSAIRPGSFQ--GLMHLQKLWMIQSQIQVIERNAFDNLQSL 257 (440)
T ss_dssp CTTSCCS-----------S-CCCCTTCSSCCEEECTTSCCCEECTTTTT--TCTTCCEEECTTCCCCEECTTSSTTCTTC
T ss_pred CCCCcCc-----------c-ccccCCCcccCEEECCCCccCccChhhhc--cCccCCEEECCCCceeEEChhhhcCCCCC
Confidence 7776521 1 12367788899999999887766 44553 78899999999988776544 67888999
Q ss_pred CeEeecCCCCceEeCccccCCCCCCCCCCcceeeccccc
Q 038637 849 KHLKISGMDRVKSVGLEFYGSSCSVPFPSLETLSFSDMR 887 (962)
Q Consensus 849 ~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~ 887 (962)
+.|+|++|. +..++...... +++|+.|+|++++
T Consensus 258 ~~L~L~~N~-l~~~~~~~~~~-----l~~L~~L~L~~Np 290 (440)
T 3zyj_A 258 VEINLAHNN-LTLLPHDLFTP-----LHHLERIHLHHNP 290 (440)
T ss_dssp CEEECTTSC-CCCCCTTTTSS-----CTTCCEEECCSSC
T ss_pred CEEECCCCC-CCccChhHhcc-----ccCCCEEEcCCCC
Confidence 999998864 45555443332 7889999998865
No 62
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.68 E-value=9.3e-17 Score=177.75 Aligned_cols=207 Identities=18% Similarity=0.149 Sum_probs=130.6
Q ss_pred cCcchhhhCCCCcccEEEeCCCcCcccccc-cccCCCcCCeEeccCCCCcccc-ccccccccCcEEeeCCCccccccchh
Q 038637 604 WSVPHMLLNHLPRLRVFSLCGYCNIFNLPN-EIGNLKHLRCLNLSRTRIQILP-ESINSLYNLHTILLENCWELKKLCKD 681 (962)
Q Consensus 604 ~~~~~~~l~~l~~Lr~L~L~~~~~~~~lp~-~i~~L~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~lp~~ 681 (962)
..+|..+ .++|++|++++| .+..+|. .+.++++|++|+|++|.++.++ ..+.++++|++|++++| .+..+|..
T Consensus 44 ~~iP~~~---~~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~ 118 (353)
T 2z80_A 44 NSIPSGL---TEAVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSS 118 (353)
T ss_dssp SSCCTTC---CTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSSCCHH
T ss_pred ccccccc---cccCcEEECCCC-cCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cCCcCCHh
Confidence 3455543 358999999998 6777764 7899999999999999998775 56889999999999998 67777766
Q ss_pred -cccCCCccEEecCCCCCccccCC--CCCCCCCCCccCCeEeCCCCCCCcccccCcccCCCeEEEeccCCCCChhhhhhh
Q 038637 682 -MGNLTKLRHLRNSDAGLLEEMPK--GFGKLTSLLTLGRFVVGKDSGSGLRELKSLTHLQGTLRISKLENVEDVGDACEA 758 (962)
Q Consensus 682 -i~~L~~L~~L~l~~~~~~~~~p~--~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~ 758 (962)
+..+++|++|++++|. +..+|. .++.+++|++|......... .....
T Consensus 119 ~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~-----------------------------~~~~~ 168 (353)
T 2z80_A 119 WFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFT-----------------------------KIQRK 168 (353)
T ss_dssp HHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCC-----------------------------EECTT
T ss_pred HhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCcccc-----------------------------ccCHH
Confidence 7889999999999987 556665 56667777666322211000 00112
Q ss_pred cCcCCcCCCceEEeccCCCCCCccchhhHHhhhccCCCCCCcCeEEEeecCCCCCCcCcCCCCCCCccEEEEeCCCCCCC
Q 038637 759 QLNNKVNLRTLLLDWSARDVQNLDQCEFETRVLSMLKPHRDVQELTIRGYGGTKFPIWLGDSSFSKLVNLKFGYCRMCTS 838 (962)
Q Consensus 759 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~ 838 (962)
.+.++++|+.|+++++... ...+..+..+++|+.|++++|.+..+|..+. ..+++|+.|++++|.+.+.
T Consensus 169 ~~~~l~~L~~L~l~~n~l~----------~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~L~L~~n~l~~~ 237 (353)
T 2z80_A 169 DFAGLTFLEELEIDASDLQ----------SYEPKSLKSIQNVSHLILHMKQHILLLEIFV-DVTSSVECLELRDTDLDTF 237 (353)
T ss_dssp TTTTCCEEEEEEEEETTCC----------EECTTTTTTCSEEEEEEEECSCSTTHHHHHH-HHTTTEEEEEEESCBCTTC
T ss_pred HccCCCCCCEEECCCCCcC----------ccCHHHHhccccCCeecCCCCccccchhhhh-hhcccccEEECCCCccccc
Confidence 2344556666666655411 1223445556666777776666655554332 1356677777776665532
Q ss_pred C----CCCCCCCCcCeEeecCC
Q 038637 839 L----PSVGQLPLLKHLKISGM 856 (962)
Q Consensus 839 l----~~l~~lp~L~~L~L~~~ 856 (962)
. +.....+.++.+++.++
T Consensus 238 ~~~~l~~~~~~~~l~~l~L~~~ 259 (353)
T 2z80_A 238 HFSELSTGETNSLIKKFTFRNV 259 (353)
T ss_dssp CCC------CCCCCCEEEEESC
T ss_pred cccccccccccchhhccccccc
Confidence 1 12233445555555554
No 63
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.68 E-value=6.2e-19 Score=203.35 Aligned_cols=355 Identities=18% Similarity=0.122 Sum_probs=222.4
Q ss_pred CCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCcc-----cccccccCCCcCCeEeccCCCCcc-cccc
Q 038637 584 EHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIF-----NLPNEIGNLKHLRCLNLSRTRIQI-LPES 657 (962)
Q Consensus 584 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~-----~lp~~i~~L~~Lr~L~Ls~~~i~~-lp~~ 657 (962)
++|+.|.+.++. +.......++..+++|++|+|++| .+. .++..+..+++|++|+|++|.+.. .+..
T Consensus 3 ~~l~~L~Ls~~~------l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~ 75 (461)
T 1z7x_W 3 LDIQSLDIQCEE------LSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNELGDVGVHC 75 (461)
T ss_dssp EEEEEEEEESCC------CCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHH
T ss_pred ccceehhhhhcc------cCchhHHHHHhhcCCccEEEccCC-CCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHH
Confidence 456677665432 222223445678899999999999 565 457778889999999999999874 2333
Q ss_pred c-cccc----cCcEEeeCCCcccc-----ccchhcccCCCccEEecCCCCCccccCCC-----CCCCCCCCccCCeEeCC
Q 038637 658 I-NSLY----NLHTILLENCWELK-----KLCKDMGNLTKLRHLRNSDAGLLEEMPKG-----FGKLTSLLTLGRFVVGK 722 (962)
Q Consensus 658 i-~~L~----~L~~L~L~~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~~~~~p~~-----i~~l~~L~~L~~~~~~~ 722 (962)
+ ..+. +|++|++++|. +. .+|..+..+++|++|++++|......+.. ....++|++|..... .
T Consensus 76 l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~ 153 (461)
T 1z7x_W 76 VLQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC-S 153 (461)
T ss_dssp HHHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-C
T ss_pred HHHHHhhCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCC-C
Confidence 3 3455 79999999994 44 56888999999999999999843222222 223456777643211 1
Q ss_pred CCCCC----cccccCcccCCCeEEEeccCCCCChhhhhhhcCc-CCcCCCceEEeccCCCCCCccchhhHHhhhccCCCC
Q 038637 723 DSGSG----LRELKSLTHLQGTLRISKLENVEDVGDACEAQLN-NKVNLRTLLLDWSARDVQNLDQCEFETRVLSMLKPH 797 (962)
Q Consensus 723 ~~~~~----~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 797 (962)
..... ...+..+++|+ .|.+.+..-.......+...+. ..++|+.|+++++... .. ....++..+..+
T Consensus 154 l~~~~~~~l~~~l~~~~~L~-~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~-----~~-~~~~l~~~l~~~ 226 (461)
T 1z7x_W 154 LSAASCEPLASVLRAKPDFK-ELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVT-----SD-NCRDLCGIVASK 226 (461)
T ss_dssp CBGGGHHHHHHHHHHCTTCC-EEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCB-----TT-HHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHhhCCCCC-EEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCc-----HH-HHHHHHHHHHhC
Confidence 11111 22244456777 7776653310000111212221 3558999999887621 11 112345556677
Q ss_pred CCcCeEEEeecCCCCC------CcCcCCCCCCCccEEEEeCCCCCCC----CC-CCCCCCCcCeEeecCCCCceEeCccc
Q 038637 798 RDVQELTIRGYGGTKF------PIWLGDSSFSKLVNLKFGYCRMCTS----LP-SVGQLPLLKHLKISGMDRVKSVGLEF 866 (962)
Q Consensus 798 ~~L~~L~l~~~~~~~~------p~~~~~~~l~~L~~L~L~~~~~~~~----l~-~l~~lp~L~~L~L~~~~~~~~~~~~~ 866 (962)
++|+.|++++|.+... +.+. ..+++|++|++++|.+... ++ .+..+++|++|++++|. +...+...
T Consensus 227 ~~L~~L~Ls~n~l~~~~~~~l~~~~~--~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~ 303 (461)
T 1z7x_W 227 ASLRELALGSNKLGDVGMAELCPGLL--HPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE-LGDEGARL 303 (461)
T ss_dssp TTCCEEECCSSBCHHHHHHHHHHHHT--STTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHHHHHHH
T ss_pred CCccEEeccCCcCChHHHHHHHHHHh--cCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC-CchHHHHH
Confidence 8999999999875432 2222 2578999999999987642 33 56678999999999875 33222111
Q ss_pred cCCCCCCCCCCcceeeccccccccccccccCCccccCcCCccceEeEccCCCccccCC--------CCCCCcceEEEccc
Q 038637 867 YGSSCSVPFPSLETLSFSDMREWEEWISCGAGQEVDEVFPKLRKLSLFNCYKLQGTLP--------KRLLLLEKLVIKSC 938 (962)
Q Consensus 867 ~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~lp--------~~l~~L~~L~i~~c 938 (962)
.........++|+.|++++|. +....... .......+++|+.|++++| .+++..+ ...++|+.|++++|
T Consensus 304 l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~-l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n 380 (461)
T 1z7x_W 304 LCETLLEPGCQLESLWVKSCS-FTAACCSH-FSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC 380 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSC-CBGGGHHH-HHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS
T ss_pred HHHHhccCCccceeeEcCCCC-CchHHHHH-HHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCC
Confidence 110001125799999999975 33221000 0011235799999999998 6653222 22579999999999
Q ss_pred cCc-------cccCCCCCCcCEEecCCCC
Q 038637 939 HRL-------LVTIQCLPTLTELHTKLCR 960 (962)
Q Consensus 939 ~~l-------~~~l~~l~~L~~L~l~~C~ 960 (962)
.-- +..+..+++|++|++++|+
T Consensus 381 ~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 381 DVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp CCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred CCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 632 3356678999999999985
No 64
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.68 E-value=1.1e-16 Score=177.20 Aligned_cols=249 Identities=20% Similarity=0.188 Sum_probs=169.4
Q ss_pred CCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCcccc-cccccCCCcCCeEeccCCCCcccccc-cccc
Q 038637 584 EHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFNL-PNEIGNLKHLRCLNLSRTRIQILPES-INSL 661 (962)
Q Consensus 584 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~l-p~~i~~L~~Lr~L~Ls~~~i~~lp~~-i~~L 661 (962)
++|+.|.+.++. + ..++...+.++++|++|+|++| .+..+ |..++++++|++|+|++|.++.+|.. ++++
T Consensus 52 ~~L~~L~l~~n~------i-~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 123 (353)
T 2z80_A 52 EAVKSLDLSNNR------I-TYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPL 123 (353)
T ss_dssp TTCCEEECTTSC------C-CEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTC
T ss_pred ccCcEEECCCCc------C-cccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCC
Confidence 589999887753 2 3455556889999999999999 67766 56799999999999999999999886 8899
Q ss_pred ccCcEEeeCCCccccccch--hcccCCCccEEecCCCCCcccc-CCCCCCCCCCCccCCeEeCCCCCCCcccccCcccCC
Q 038637 662 YNLHTILLENCWELKKLCK--DMGNLTKLRHLRNSDAGLLEEM-PKGFGKLTSLLTLGRFVVGKDSGSGLRELKSLTHLQ 738 (962)
Q Consensus 662 ~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~~-p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~ 738 (962)
++|++|++++| .+..+|. .+..+++|++|++++|..+..+ |..++.+++|++|..... ...
T Consensus 124 ~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n-~l~-------------- 187 (353)
T 2z80_A 124 SSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS-DLQ-------------- 187 (353)
T ss_dssp TTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET-TCC--------------
T ss_pred ccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC-CcC--------------
Confidence 99999999999 7778887 6889999999999998545555 456777777777732211 000
Q ss_pred CeEEEeccCCCCChhhhhhhcCcCCcCCCceEEeccCCCCCCccchhhHHhhhccCCCCCCcCeEEEeecCCCCCCcCc-
Q 038637 739 GTLRISKLENVEDVGDACEAQLNNKVNLRTLLLDWSARDVQNLDQCEFETRVLSMLKPHRDVQELTIRGYGGTKFPIWL- 817 (962)
Q Consensus 739 ~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~- 817 (962)
...+..+..+++|+.|+++++... . .... .+..+++|+.|++++|.+..++...
T Consensus 188 ---------------~~~~~~l~~l~~L~~L~l~~n~l~-----~--~~~~---~~~~~~~L~~L~L~~n~l~~~~~~~l 242 (353)
T 2z80_A 188 ---------------SYEPKSLKSIQNVSHLILHMKQHI-----L--LLEI---FVDVTSSVECLELRDTDLDTFHFSEL 242 (353)
T ss_dssp ---------------EECTTTTTTCSEEEEEEEECSCST-----T--HHHH---HHHHTTTEEEEEEESCBCTTCCCC--
T ss_pred ---------------ccCHHHHhccccCCeecCCCCccc-----c--chhh---hhhhcccccEEECCCCcccccccccc
Confidence 011233455667777777766511 0 0111 1223567888888887766543211
Q ss_pred -CCCCCCCccEEEEeCCCCCC----CCC-CCCCCCCcCeEeecCCCCceEeCccccCCCCCCCCCCcceeeccccc
Q 038637 818 -GDSSFSKLVNLKFGYCRMCT----SLP-SVGQLPLLKHLKISGMDRVKSVGLEFYGSSCSVPFPSLETLSFSDMR 887 (962)
Q Consensus 818 -~~~~l~~L~~L~L~~~~~~~----~l~-~l~~lp~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~ 887 (962)
.....+.++.++|.++.+.+ .+| .++.+++|+.|++++|. +..++....+. +++|+.|++++++
T Consensus 243 ~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~-l~~i~~~~~~~-----l~~L~~L~L~~N~ 312 (353)
T 2z80_A 243 STGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ-LKSVPDGIFDR-----LTSLQKIWLHTNP 312 (353)
T ss_dssp ----CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC-CCCCCTTTTTT-----CTTCCEEECCSSC
T ss_pred ccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC-CCccCHHHHhc-----CCCCCEEEeeCCC
Confidence 01235667788888777653 233 46677888888887764 44555443222 6777777777754
No 65
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.68 E-value=1e-18 Score=208.47 Aligned_cols=350 Identities=12% Similarity=0.070 Sum_probs=227.4
Q ss_pred CCCCeeEEccCCCccccccccccCcchhhhCCCCc-ccEEEeCCCcCcc--cccccccCCCcCCeEeccCCCCcc-----
Q 038637 582 DVEHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPR-LRVFSLCGYCNIF--NLPNEIGNLKHLRCLNLSRTRIQI----- 653 (962)
Q Consensus 582 ~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~-Lr~L~L~~~~~~~--~lp~~i~~L~~Lr~L~Ls~~~i~~----- 653 (962)
.+++|+.|.+.++. +....+..+...++. |++|+|++|..+. .++..+.++++|++|+|++|.+..
T Consensus 110 ~~~~L~~L~L~~~~------i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~ 183 (592)
T 3ogk_B 110 NLRQLKSVHFRRMI------VSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKW 183 (592)
T ss_dssp HCTTCCEEEEESCB------CCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHH
T ss_pred hCCCCCeEEeeccE------ecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhH
Confidence 67889999877642 222222222222444 9999999985332 233444588999999999998752
Q ss_pred ccccccccccCcEEeeCCCccc----cccchhcccCCCccEEecCCCCCccccCCCCCCCCCCCccCCeEeCC--CCCCC
Q 038637 654 LPESINSLYNLHTILLENCWEL----KKLCKDMGNLTKLRHLRNSDAGLLEEMPKGFGKLTSLLTLGRFVVGK--DSGSG 727 (962)
Q Consensus 654 lp~~i~~L~~L~~L~L~~~~~l----~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~--~~~~~ 727 (962)
++..+.++++|++|++++|... ..++..+..+++|++|++++|. ...+|..++.+++|++|....... .....
T Consensus 184 l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~ 262 (592)
T 3ogk_B 184 LHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEK 262 (592)
T ss_dssp HHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTS
T ss_pred HHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHH
Confidence 4555678999999999988432 3566667889999999999987 566787788889998885422111 11233
Q ss_pred cccccCcccCCCeEEEeccCCCCChhhhhhhcCcCCcCCCceEEeccCCCCCCccchhhHHhhhccCCCCCCcCeEEEee
Q 038637 728 LRELKSLTHLQGTLRISKLENVEDVGDACEAQLNNKVNLRTLLLDWSARDVQNLDQCEFETRVLSMLKPHRDVQELTIRG 807 (962)
Q Consensus 728 ~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 807 (962)
...+..+++|+ .+.+.... ...++..+..+++|++|+++++... .......+..+++|+.|++.+
T Consensus 263 ~~~l~~~~~L~-~L~l~~~~-----~~~l~~~~~~~~~L~~L~Ls~~~l~---------~~~~~~~~~~~~~L~~L~L~~ 327 (592)
T 3ogk_B 263 YMNLVFPRKLC-RLGLSYMG-----PNEMPILFPFAAQIRKLDLLYALLE---------TEDHCTLIQKCPNLEVLETRN 327 (592)
T ss_dssp SSCCCCCTTCC-EEEETTCC-----TTTGGGGGGGGGGCCEEEETTCCCC---------HHHHHHHHTTCTTCCEEEEEG
T ss_pred HHHhhcccccc-ccCccccc-----hhHHHHHHhhcCCCcEEecCCCcCC---------HHHHHHHHHhCcCCCEEeccC
Confidence 45566777777 77765532 2334556677889999999987621 122334457789999999985
Q ss_pred cCCC-CCCcCcCCCCCCCccEEEEeC----------CCCCCC--CC-CCCCCCCcCeEeecCCCCceEeCccccCCCCCC
Q 038637 808 YGGT-KFPIWLGDSSFSKLVNLKFGY----------CRMCTS--LP-SVGQLPLLKHLKISGMDRVKSVGLEFYGSSCSV 873 (962)
Q Consensus 808 ~~~~-~~p~~~~~~~l~~L~~L~L~~----------~~~~~~--l~-~l~~lp~L~~L~L~~~~~~~~~~~~~~~~~~~~ 873 (962)
+... .++.... .+++|++|+|++ |..... ++ ....+|+|++|++.. +.+...+....+ .
T Consensus 328 ~~~~~~l~~~~~--~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~-~~l~~~~~~~l~----~ 400 (592)
T 3ogk_B 328 VIGDRGLEVLAQ--YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYV-SDITNESLESIG----T 400 (592)
T ss_dssp GGHHHHHHHHHH--HCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEE-SCCCHHHHHHHH----H
T ss_pred ccCHHHHHHHHH--hCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeec-CCccHHHHHHHH----h
Confidence 4221 2232222 578999999995 544432 22 234589999999954 444332211111 1
Q ss_pred CCCCcceeeccc---cccccccccccCCccccCcCCccceEeEccCCC-cccc----CCCCCCCcceEEEccccCc----
Q 038637 874 PFPSLETLSFSD---MREWEEWISCGAGQEVDEVFPKLRKLSLFNCYK-LQGT----LPKRLLLLEKLVIKSCHRL---- 941 (962)
Q Consensus 874 ~f~~L~~L~l~~---~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~c~~-L~~~----lp~~l~~L~~L~i~~c~~l---- 941 (962)
.+++|+.|++++ ++.++..+...........+++|+.|+++.|.+ +++. +...+++|+.|++.+|.--
T Consensus 401 ~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 480 (592)
T 3ogk_B 401 YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGL 480 (592)
T ss_dssp HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHH
T ss_pred hCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHH
Confidence 178999999984 334443211000001123589999999988753 4322 2245889999999988732
Q ss_pred cccCCCCCCcCEEecCCCC
Q 038637 942 LVTIQCLPTLTELHTKLCR 960 (962)
Q Consensus 942 ~~~l~~l~~L~~L~l~~C~ 960 (962)
...+..+++|++|+|++|+
T Consensus 481 ~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 481 MEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp HHHHTCCTTCCEEEEESCC
T ss_pred HHHHhcCcccCeeeccCCC
Confidence 2345788999999999997
No 66
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.67 E-value=1.3e-15 Score=173.85 Aligned_cols=242 Identities=18% Similarity=0.198 Sum_probs=170.6
Q ss_pred ccEEEeCCCcCcccccccccCCCcCCeEeccCCCCcccc-ccccccccCcEEeeCCCcccccc-chhcccCCCccEEecC
Q 038637 617 LRVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILP-ESINSLYNLHTILLENCWELKKL-CKDMGNLTKLRHLRNS 694 (962)
Q Consensus 617 Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~ 694 (962)
.+.++.++. .+..+|..+. .+|++|+|++|.++.++ ..+.++++|++|+|++| .+..+ |..+.++++|++|+++
T Consensus 45 ~~~v~c~~~-~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRK-NLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSC-CCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCCC-CcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECC
Confidence 456777776 7889998775 68999999999999776 67999999999999999 55555 4678999999999999
Q ss_pred CCCCccccCC-CCCCCCCCCccCCeEeCCCCCCCcccccCcccCCCeEEEeccCCCCChhhhhhhcCcCCcCCCceEEec
Q 038637 695 DAGLLEEMPK-GFGKLTSLLTLGRFVVGKDSGSGLRELKSLTHLQGTLRISKLENVEDVGDACEAQLNNKVNLRTLLLDW 773 (962)
Q Consensus 695 ~~~~~~~~p~-~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 773 (962)
+|. +..+|. .+..+++|++|..... . +. ......+.++++|+.|++..
T Consensus 121 ~n~-l~~~~~~~~~~l~~L~~L~L~~N------~---------i~---------------~~~~~~~~~l~~L~~L~l~~ 169 (440)
T 3zyj_A 121 DNR-LTTIPNGAFVYLSKLKELWLRNN------P---------IE---------------SIPSYAFNRIPSLRRLDLGE 169 (440)
T ss_dssp SSC-CSSCCTTTSCSCSSCCEEECCSC------C---------CC---------------EECTTTTTTCTTCCEEECCC
T ss_pred CCc-CCeeCHhHhhccccCceeeCCCC------c---------cc---------------ccCHHHhhhCcccCEeCCCC
Confidence 997 556665 4777887777732111 0 10 00112345667778887776
Q ss_pred cCCCCCCccchhhHHhhhccCCCCCCcCeEEEeecCCCCCCcCcCCCCCCCccEEEEeCCCCCCCCC-CCCCCCCcCeEe
Q 038637 774 SARDVQNLDQCEFETRVLSMLKPHRDVQELTIRGYGGTKFPIWLGDSSFSKLVNLKFGYCRMCTSLP-SVGQLPLLKHLK 852 (962)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L~~L~ 852 (962)
+. . + .......+..+++|+.|++++|.+..+|... .+++|+.|+|++|.+....| .+..+++|+.|+
T Consensus 170 ~~-~---l-----~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 237 (440)
T 3zyj_A 170 LK-R---L-----SYISEGAFEGLSNLRYLNLAMCNLREIPNLT---PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLW 237 (440)
T ss_dssp CT-T---C-----CEECTTTTTTCSSCCEEECTTSCCSSCCCCT---TCSSCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CC-C---c-----ceeCcchhhcccccCeecCCCCcCccccccC---CCcccCEEECCCCccCccChhhhccCccCCEEE
Confidence 43 1 0 0111234667888999999988888888532 68889999999888776545 678888999999
Q ss_pred ecCCCCceEeCccccCCCCCCCCCCcceeeccccccccccccccCCccccCcCCccceEeEccCC
Q 038637 853 ISGMDRVKSVGLEFYGSSCSVPFPSLETLSFSDMREWEEWISCGAGQEVDEVFPKLRKLSLFNCY 917 (962)
Q Consensus 853 L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~c~ 917 (962)
|++|. +..++..... .+++|+.|+|+++ .++.+.. .....+++|+.|++++||
T Consensus 238 L~~n~-l~~~~~~~~~-----~l~~L~~L~L~~N-~l~~~~~-----~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 238 MIQSQ-IQVIERNAFD-----NLQSLVEINLAHN-NLTLLPH-----DLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CTTCC-CCEECTTSST-----TCTTCCEEECTTS-CCCCCCT-----TTTSSCTTCCEEECCSSC
T ss_pred CCCCc-eeEEChhhhc-----CCCCCCEEECCCC-CCCccCh-----hHhccccCCCEEEcCCCC
Confidence 98864 4444433222 2788888888885 4554432 123457888888888764
No 67
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.67 E-value=8.7e-17 Score=172.22 Aligned_cols=201 Identities=19% Similarity=0.203 Sum_probs=120.8
Q ss_pred CCcccEEEeCCCcCccccc-ccccCCCcCCeEeccCCCCccc-cccccccccCcEEeeCCCcccccc-chhcccCCCccE
Q 038637 614 LPRLRVFSLCGYCNIFNLP-NEIGNLKHLRCLNLSRTRIQIL-PESINSLYNLHTILLENCWELKKL-CKDMGNLTKLRH 690 (962)
Q Consensus 614 l~~Lr~L~L~~~~~~~~lp-~~i~~L~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~ 690 (962)
.++|++|+|++| .+..+| ..+..+++|++|+|++|.++.+ |..+.++++|++|++++|..+..+ |..+..+++|++
T Consensus 31 ~~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~ 109 (285)
T 1ozn_A 31 PAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109 (285)
T ss_dssp CTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred CCCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence 457888888887 566665 5677888888888888888766 567788888888888887436655 566778888888
Q ss_pred EecCCCCCccccCCCCCCCCCCCccCCeEeCCCCCCCcccccCcccCCCeEEEeccCCCCChhhhhhhcCcCCcCCCceE
Q 038637 691 LRNSDAGLLEEMPKGFGKLTSLLTLGRFVVGKDSGSGLRELKSLTHLQGTLRISKLENVEDVGDACEAQLNNKVNLRTLL 770 (962)
Q Consensus 691 L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~ 770 (962)
|++++|......|..++.+++|++| +
T Consensus 110 L~l~~n~l~~~~~~~~~~l~~L~~L------------------------------------------------------~ 135 (285)
T 1ozn_A 110 LHLDRCGLQELGPGLFRGLAALQYL------------------------------------------------------Y 135 (285)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEE------------------------------------------------------E
T ss_pred EECCCCcCCEECHhHhhCCcCCCEE------------------------------------------------------E
Confidence 8888876333334445555555444 2
Q ss_pred EeccCCCCCCccchhhHHhhhccCCCCCCcCeEEEeecCCCCCCcC-cCCCCCCCccEEEEeCCCCCCCCC-CCCCCCCc
Q 038637 771 LDWSARDVQNLDQCEFETRVLSMLKPHRDVQELTIRGYGGTKFPIW-LGDSSFSKLVNLKFGYCRMCTSLP-SVGQLPLL 848 (962)
Q Consensus 771 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~-~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L 848 (962)
++++... ......+..+++|+.|++++|.+..+|.. +. .+++|+.|+|++|.+.+..| .++.+++|
T Consensus 136 l~~n~l~----------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 203 (285)
T 1ozn_A 136 LQDNALQ----------ALPDDTFRDLGNLTHLFLHGNRISSVPERAFR--GLHSLDRLLLHQNRVAHVHPHAFRDLGRL 203 (285)
T ss_dssp CCSSCCC----------CCCTTTTTTCTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred CCCCccc----------ccCHhHhccCCCccEEECCCCcccccCHHHhc--CccccCEEECCCCcccccCHhHccCcccc
Confidence 2111100 00011234455666666666655555442 32 56667777777666655434 56666677
Q ss_pred CeEeecCCCCceEeCccccCCCCCCCCCCcceeeccccc
Q 038637 849 KHLKISGMDRVKSVGLEFYGSSCSVPFPSLETLSFSDMR 887 (962)
Q Consensus 849 ~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~ 887 (962)
+.|++++|. +..++...... +++|+.|++++++
T Consensus 204 ~~L~l~~n~-l~~~~~~~~~~-----l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 204 MTLYLFANN-LSALPTEALAP-----LRALQYLRLNDNP 236 (285)
T ss_dssp CEEECCSSC-CSCCCHHHHTT-----CTTCCEEECCSSC
T ss_pred cEeeCCCCc-CCcCCHHHccc-----CcccCEEeccCCC
Confidence 777776653 33333221221 6666666666654
No 68
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.66 E-value=7.4e-16 Score=176.63 Aligned_cols=221 Identities=16% Similarity=0.194 Sum_probs=157.9
Q ss_pred CCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCccccc-ccccCCCcCCeEeccCCCCcccccc-cccc
Q 038637 584 EHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFNLP-NEIGNLKHLRCLNLSRTRIQILPES-INSL 661 (962)
Q Consensus 584 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~lp-~~i~~L~~Lr~L~Ls~~~i~~lp~~-i~~L 661 (962)
++++.|.+.++. + ..++...|.++++|++|+|++| .+..++ ..|.++.+|++|+|++|.++.+|.. +..+
T Consensus 75 ~~l~~L~L~~n~------i-~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 146 (452)
T 3zyi_A 75 SNTRYLNLMENN------I-QMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYL 146 (452)
T ss_dssp TTCSEEECCSSC------C-CEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSC
T ss_pred CCccEEECcCCc------C-ceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCCCcCCccChhhhccc
Confidence 578888777653 2 2344455788999999999999 666664 7789999999999999999988875 7889
Q ss_pred ccCcEEeeCCCccccccch-hcccCCCccEEecCCCCCccccCCC-CCCCCCCCccCCeEeCCCCCCCcccccCcccCCC
Q 038637 662 YNLHTILLENCWELKKLCK-DMGNLTKLRHLRNSDAGLLEEMPKG-FGKLTSLLTLGRFVVGKDSGSGLRELKSLTHLQG 739 (962)
Q Consensus 662 ~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~ 739 (962)
++|++|+|++| .+..+|. .+.++++|++|++++|..+..+|.. +..+++|+.|.... ..+..+
T Consensus 147 ~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~------n~l~~~-------- 211 (452)
T 3zyi_A 147 SKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM------CNIKDM-------- 211 (452)
T ss_dssp TTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTT------SCCSSC--------
T ss_pred CCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCC------Cccccc--------
Confidence 99999999999 5666655 6789999999999987767777653 66777777663211 111111
Q ss_pred eEEEeccCCCCChhhhhhhcCcCCcCCCceEEeccCCCCCCccchhhHHhhhccCCCCCCcCeEEEeecCCCCC-CcCcC
Q 038637 740 TLRISKLENVEDVGDACEAQLNNKVNLRTLLLDWSARDVQNLDQCEFETRVLSMLKPHRDVQELTIRGYGGTKF-PIWLG 818 (962)
Q Consensus 740 ~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-p~~~~ 818 (962)
..+..+++|+.|+++++.. ....+..+..+++|+.|++++|.+..+ |..+.
T Consensus 212 ------------------~~~~~l~~L~~L~Ls~N~l----------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 263 (452)
T 3zyi_A 212 ------------------PNLTPLVGLEELEMSGNHF----------PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFD 263 (452)
T ss_dssp ------------------CCCTTCTTCCEEECTTSCC----------SEECGGGGTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred ------------------ccccccccccEEECcCCcC----------cccCcccccCccCCCEEEeCCCcCceECHHHhc
Confidence 1134456777777776652 122345566778888888888877755 33443
Q ss_pred CCCCCCccEEEEeCCCCCCCCC-CCCCCCCcCeEeecCCC
Q 038637 819 DSSFSKLVNLKFGYCRMCTSLP-SVGQLPLLKHLKISGMD 857 (962)
Q Consensus 819 ~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L~~L~L~~~~ 857 (962)
.+++|+.|+|++|.+....+ .+..+++|+.|+|++|+
T Consensus 264 --~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 264 --GLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp --TCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred --CCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 67888888888887764333 56778888888888765
No 69
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.66 E-value=7.2e-17 Score=143.50 Aligned_cols=80 Identities=24% Similarity=0.383 Sum_probs=74.0
Q ss_pred HHHHHHHHhcchHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHhhc--ccCChHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 038637 12 SVQMLLEKLAPEGVELLTRHEKLKADFIKWKGMLEMIRAVLADAEDR--RTKEKSVKMWLDNLQNLAYDLEDILDEFQTE 89 (962)
Q Consensus 12 ~v~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~--~~~~~~~~~wl~~lr~~ayd~eD~lD~~~~~ 89 (962)
+|+.+++||++.+.+|+.+..||++|+++|+++|++|++||.||+.+ +..+++++.|++||||+|||+|||||+|.|+
T Consensus 2 ~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~ 81 (115)
T 3qfl_A 2 AISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQ 81 (115)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888999999999999999999999999999999999999998 5689999999999999999999999999998
Q ss_pred HH
Q 038637 90 SL 91 (962)
Q Consensus 90 ~~ 91 (962)
..
T Consensus 82 ~~ 83 (115)
T 3qfl_A 82 VD 83 (115)
T ss_dssp HH
T ss_pred hc
Confidence 63
No 70
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.64 E-value=5e-18 Score=202.59 Aligned_cols=372 Identities=15% Similarity=0.112 Sum_probs=224.1
Q ss_pred CceeEEEEEeecccccccccccc-CCCCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCccc-----cc
Q 038637 559 QTLRHFSYICREYDGKKRLESVC-DVEHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFN-----LP 632 (962)
Q Consensus 559 ~~~r~ls~~~~~~~~~~~~~~~~-~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~-----lp 632 (962)
...+++.+...... ...+..+. .+++|++|.+.++.. +.......++.++++|++|+|++|. +.. ++
T Consensus 105 ~~L~~L~L~~~~~~-~~~~~~l~~~~~~L~~L~L~~~~~-----~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~ 177 (594)
T 2p1m_B 105 TWLEEIRLKRMVVT-DDCLELIAKSFKNFKVLVLSSCEG-----FSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLS 177 (594)
T ss_dssp TTCCEEEEESCBCC-HHHHHHHHHHCTTCCEEEEESCEE-----EEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGG
T ss_pred CCCCeEEeeCcEEc-HHHHHHHHHhCCCCcEEeCCCcCC-----CCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHH
Confidence 35777877765322 12223333 578999998877531 1222233445678999999999984 433 33
Q ss_pred ccccCCCcCCeEeccCCC--Cc--cccccccccccCcEEeeCCCccccccchhcccCCCccEEecCCCCC------cccc
Q 038637 633 NEIGNLKHLRCLNLSRTR--IQ--ILPESINSLYNLHTILLENCWELKKLCKDMGNLTKLRHLRNSDAGL------LEEM 702 (962)
Q Consensus 633 ~~i~~L~~Lr~L~Ls~~~--i~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~------~~~~ 702 (962)
.....+++|++|+|++|. +. .++..+.++++|++|++++|..+..+|..+..+++|++|++..+.. +..+
T Consensus 178 ~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l 257 (594)
T 2p1m_B 178 HFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGL 257 (594)
T ss_dssp GSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHH
T ss_pred HHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHH
Confidence 334477899999999886 32 3444456689999999999977777888889999999999776531 2234
Q ss_pred CCCCCCCCCCCccCCeEeCCCCCCCccc-ccCcccCCCeEEEeccCCCCChhhhhhhcCcCCcCCCceEEeccCCCCCCc
Q 038637 703 PKGFGKLTSLLTLGRFVVGKDSGSGLRE-LKSLTHLQGTLRISKLENVEDVGDACEAQLNNKVNLRTLLLDWSARDVQNL 781 (962)
Q Consensus 703 p~~i~~l~~L~~L~~~~~~~~~~~~~~~-l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 781 (962)
+..++++++|+.|..+.. .....+.. ...+++|+ .|.+.... +. ...+...+..+++|+.|.+..+. .
T Consensus 258 ~~~l~~~~~L~~Ls~~~~--~~~~~l~~~~~~~~~L~-~L~L~~~~-l~--~~~l~~~~~~~~~L~~L~l~~~~-~---- 326 (594)
T 2p1m_B 258 SVALSGCKELRCLSGFWD--AVPAYLPAVYSVCSRLT-TLNLSYAT-VQ--SYDLVKLLCQCPKLQRLWVLDYI-E---- 326 (594)
T ss_dssp HHHHHTCTTCCEEECCBT--CCGGGGGGGHHHHTTCC-EEECTTCC-CC--HHHHHHHHTTCTTCCEEEEEGGG-H----
T ss_pred HHHHhcCCCcccccCCcc--cchhhHHHHHHhhCCCC-EEEccCCC-CC--HHHHHHHHhcCCCcCEEeCcCcc-C----
Confidence 445677788877732211 11111221 22456777 77776554 22 22344446678899999988653 1
Q ss_pred cchhhHHhhhccCCCCCCcCeEEEeecC------CCCCCc----CcCCCCCCCccEEEEeCCCCCCC-CCCCC-CCCCcC
Q 038637 782 DQCEFETRVLSMLKPHRDVQELTIRGYG------GTKFPI----WLGDSSFSKLVNLKFGYCRMCTS-LPSVG-QLPLLK 849 (962)
Q Consensus 782 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~------~~~~p~----~~~~~~l~~L~~L~L~~~~~~~~-l~~l~-~lp~L~ 849 (962)
..........+++|+.|++.++. ...+.. .+. ..+++|+.|.+..+.+.+. +..+. .+|+|+
T Consensus 327 -----~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~-~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~ 400 (594)
T 2p1m_B 327 -----DAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVS-MGCPKLESVLYFCRQMTNAALITIARNRPNMT 400 (594)
T ss_dssp -----HHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHH-HHCTTCCEEEEEESCCCHHHHHHHHHHCTTCC
T ss_pred -----HHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHH-HhchhHHHHHHhcCCcCHHHHHHHHhhCCCcc
Confidence 11122222346789999996531 111111 000 1378899997776665432 22333 578999
Q ss_pred eEeec-----CCCCceEeCccccCCCCCCCCCCcceeeccccccccccccccCCccccCcCCccceEeEccCCCccccCC
Q 038637 850 HLKIS-----GMDRVKSVGLEFYGSSCSVPFPSLETLSFSDMREWEEWISCGAGQEVDEVFPKLRKLSLFNCYKLQGTLP 924 (962)
Q Consensus 850 ~L~L~-----~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~lp 924 (962)
.|++. +|+.+...+....-..-...+++|+.|++++ .+..... ......+++|+.|++++| .+++..+
T Consensus 401 ~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~----~~l~~~~~~L~~L~L~~~-~i~~~~~ 473 (594)
T 2p1m_B 401 RFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVF----EYIGTYAKKMEMLSVAFA-GDSDLGM 473 (594)
T ss_dssp EEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHH----HHHHHHCTTCCEEEEESC-CSSHHHH
T ss_pred eeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHH----HHHHHhchhccEeeccCC-CCcHHHH
Confidence 99998 4555553321100000011278999999976 3332211 001123788999999988 4543222
Q ss_pred ----CCCCCcceEEEccccCcc----ccCCCCCCcCEEecCCCCC
Q 038637 925 ----KRLLLLEKLVIKSCHRLL----VTIQCLPTLTELHTKLCRR 961 (962)
Q Consensus 925 ----~~l~~L~~L~i~~c~~l~----~~l~~l~~L~~L~l~~C~~ 961 (962)
..+++|+.|++++|+.-. ..+..+++|+.|+|++|+.
T Consensus 474 ~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 474 HHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 457889999999998521 1345688999999999973
No 71
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.64 E-value=1.2e-16 Score=173.76 Aligned_cols=246 Identities=11% Similarity=0.082 Sum_probs=178.9
Q ss_pred cCCCCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCcccccccccCCCcCCeEeccCCCCccccccccc
Q 038637 581 CDVEHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINS 660 (962)
Q Consensus 581 ~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~ 660 (962)
..+++|+.|.+.++. + ..++...+.++++|++|+|++| .+..++. +..+++|++|+|++|.++.+|.
T Consensus 31 ~~~~~L~~L~L~~n~------l-~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~---- 97 (317)
T 3o53_A 31 QSAWNVKELDLSGNP------L-SQISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNYVQELLV---- 97 (317)
T ss_dssp TTGGGCSEEECTTSC------C-CCCCHHHHTTCTTCCEEECTTS-CCEEEEE-ETTCTTCCEEECCSSEEEEEEE----
T ss_pred ccCCCCCEEECcCCc------c-CcCCHHHhhCCCcCCEEECCCC-cCCcchh-hhhcCCCCEEECcCCccccccC----
Confidence 456789999888753 2 3345556889999999999999 6766665 9999999999999999987763
Q ss_pred cccCcEEeeCCCccccccchhcccCCCccEEecCCCCCccccCCCCCCCCCCCccCCeEeCCCCCCCcccccCcccCCCe
Q 038637 661 LYNLHTILLENCWELKKLCKDMGNLTKLRHLRNSDAGLLEEMPKGFGKLTSLLTLGRFVVGKDSGSGLRELKSLTHLQGT 740 (962)
Q Consensus 661 L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~ 740 (962)
+++|++|++++| .+..++. ..+++|++|++++|......|..++.+++|++|.... . .+. .
T Consensus 98 ~~~L~~L~l~~n-~l~~~~~--~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~------N---------~l~-~ 158 (317)
T 3o53_A 98 GPSIETLHAANN-NISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL------N---------EID-T 158 (317)
T ss_dssp CTTCCEEECCSS-CCSEEEE--CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTT------S---------CCC-E
T ss_pred CCCcCEEECCCC-ccCCcCc--cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCC------C---------CCC-c
Confidence 489999999999 6666654 3478999999999984443445677777777663210 0 111 0
Q ss_pred EEEeccCCCCChhhhhhhc-CcCCcCCCceEEeccCCCCCCccchhhHHhhhccCCCCCCcCeEEEeecCCCCCCcCcCC
Q 038637 741 LRISKLENVEDVGDACEAQ-LNNKVNLRTLLLDWSARDVQNLDQCEFETRVLSMLKPHRDVQELTIRGYGGTKFPIWLGD 819 (962)
Q Consensus 741 L~i~~l~~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~ 819 (962)
+ .... ...+++|+.|+++++... .+ .....+++|+.|++++|.+..+|..+.
T Consensus 159 ~--------------~~~~~~~~l~~L~~L~L~~N~l~-----------~~-~~~~~l~~L~~L~Ls~N~l~~l~~~~~- 211 (317)
T 3o53_A 159 V--------------NFAELAASSDTLEHLNLQYNFIY-----------DV-KGQVVFAKLKTLDLSSNKLAFMGPEFQ- 211 (317)
T ss_dssp E--------------EGGGGGGGTTTCCEEECTTSCCC-----------EE-ECCCCCTTCCEEECCSSCCCEECGGGG-
T ss_pred c--------------cHHHHhhccCcCCEEECCCCcCc-----------cc-ccccccccCCEEECCCCcCCcchhhhc-
Confidence 0 0111 234578888988877621 11 233457899999999999998888764
Q ss_pred CCCCCccEEEEeCCCCCCCCCCCCCCCCcCeEeecCCCCc-eEeCccccCCCCCCCCCCcceeecccccccccc
Q 038637 820 SSFSKLVNLKFGYCRMCTSLPSVGQLPLLKHLKISGMDRV-KSVGLEFYGSSCSVPFPSLETLSFSDMREWEEW 892 (962)
Q Consensus 820 ~~l~~L~~L~L~~~~~~~~l~~l~~lp~L~~L~L~~~~~~-~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~ 892 (962)
.+++|+.|+|++|.+....+.+..+++|+.|++++|+.. ..++. +.+. +++|+.|++.+++.++..
T Consensus 212 -~l~~L~~L~L~~N~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~-~~~~-----~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 212 -SAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRD-FFSK-----NQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp -GGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCCBHHHHHH-HHHT-----CHHHHHHHHHHHHHHHSS
T ss_pred -ccCcccEEECcCCcccchhhHhhcCCCCCEEEccCCCccCcCHHH-HHhc-----cccceEEECCCchhccCC
Confidence 789999999999988753337889999999999998754 22222 2222 889999999877766654
No 72
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.64 E-value=1.7e-15 Score=171.61 Aligned_cols=314 Identities=11% Similarity=0.000 Sum_probs=187.4
Q ss_pred CccccchhhHHHHHHHH-hcCCCCCCCCcEEEEE--EcCCCchHHHHHHHHhCccchh---cccc-eEEEEEeCCCCCHH
Q 038637 201 AEVYGREKEEEEIVELL-LNDGLRADDGFSVISI--NGMGGVGKTTLAQLVYNDDRVQ---RHFQ-FKAWACVSEDFDVF 273 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L-~~~~~~~~~~~~vi~I--~G~~GiGKTtLa~~v~~~~~~~---~~F~-~~~wv~v~~~~~~~ 273 (962)
..++||+.++++|.+++ ...........+.+.| +|++|+||||||+.+++..... ..|. ..+|+.+....+..
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLY 101 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHH
Confidence 57999999999999988 4321100013456667 9999999999999999843211 0122 35688877778899
Q ss_pred HHHHHHHHHhccCCCCCCccHHHHHHHHHhHhC--CceEEEEEecCCCCC------ccchhhccCCCCCC---C--CCcE
Q 038637 274 RVTKSILKSIANDQSNNDDDLNLLQEKLKKQLS--GNKFLLVLDDVWNKN------YNYWSILSCPFGAG---A--PGSK 340 (962)
Q Consensus 274 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~------~~~~~~l~~~l~~~---~--~gs~ 340 (962)
.++..++.+++........+...+...+.+.+. +++++|||||+|.-. ...+..+...+... . ....
T Consensus 102 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~ 181 (412)
T 1w5s_A 102 TILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIG 181 (412)
T ss_dssp HHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEE
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEE
Confidence 999999999876543223345556666666664 789999999997621 12333332222211 2 3445
Q ss_pred EEEEecChhhHhhh--------C-CCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcC------CCh
Q 038637 341 IVVTTRNLDVANLT--------R-AYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCK------GLP 405 (962)
Q Consensus 341 ilvTtR~~~v~~~~--------~-~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~------glP 405 (962)
||+||+...+.... . ....+.+.+++.++.+++|..++..... ......+....|++.|+ |.|
T Consensus 182 lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~G~p 259 (412)
T 1w5s_A 182 FLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLR--DTVWEPRHLELISDVYGEDKGGDGSA 259 (412)
T ss_dssp EEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBC--TTSCCHHHHHHHHHHHCGGGTSCCCH
T ss_pred EEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCC--CCCCChHHHHHHHHHHHHhccCCCcH
Confidence 88888765432111 1 1123899999999999999765321000 01122567888999999 999
Q ss_pred HHHHHHHhhh---c---CC--CChhHHHHHHhhhhhcccccccCc-hhHHHhhccCCchhhHhHHhhhcCCC--CCceeC
Q 038637 406 LAAKTLGGLL---R---GK--DDLTDWEFVLNTDIWKLQEENYGI-IPALRVSYHFLPSQLKQCFAYCSLFP--KDYEFQ 474 (962)
Q Consensus 406 Lai~~~~~~L---~---~~--~~~~~w~~~~~~~~~~~~~~~~~i-~~~l~~sy~~L~~~~k~cfl~~~~fp--~~~~i~ 474 (962)
..+..+.... + .. -+.+.+..+.... . ...+.-++..||++.+.++..++.+. .+..+.
T Consensus 260 ~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~----------~~~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~ 329 (412)
T 1w5s_A 260 RRAIVALKMACEMAEAMGRDSLSEDLVRKAVSEN----------EAASIQTHELEALSIHELIILRLIAEATLGGMEWIN 329 (412)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC----------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBC
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH----------hccchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCcc
Confidence 7655554321 1 11 1223333222211 1 23455577889999999999888653 233555
Q ss_pred HHHHHHHHH--H-cCCcccccCCCcHHHHHHHHHHHHhhCCCcccccC---CCCcEEEcchh
Q 038637 475 EEEIILLWT--A-EGFLDQEYNGRKMEDLGREFVRELHSRSLFQQSSR---DASRFVMHDLI 530 (962)
Q Consensus 475 ~~~li~~W~--a-eg~i~~~~~~~~~e~~~~~~l~~L~~r~ll~~~~~---~~~~~~mHdli 530 (962)
...+...|. + .-. . ...........++++|...++|..... ...+|++|++.
T Consensus 330 ~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~~g~~~~~~l~ 387 (412)
T 1w5s_A 330 AGLLRQRYEDASLTMY-N---VKPRGYTQYHIYLKHLTSLGLVDAKPSGRGMRGRTTLFRLA 387 (412)
T ss_dssp HHHHHHHHHHHHHHHS-C---CCCCCHHHHHHHHHHHHHTTSEEEECC-------CCEEEEC
T ss_pred HHHHHHHHHHHHHhhc-C---CCCCCHHHHHHHHHHHHhCCCEEeecccCCCCCceeEEEeC
Confidence 655554442 2 110 0 011123456789999999999987542 13456666665
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.62 E-value=1.3e-16 Score=183.89 Aligned_cols=239 Identities=12% Similarity=0.100 Sum_probs=146.4
Q ss_pred CCCcccEEEeCCCcCcccc-cccccCCCcCCeEeccCCCCccccccccccccCcEEeeCCCccccccchhcccCCCccEE
Q 038637 613 HLPRLRVFSLCGYCNIFNL-PNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLENCWELKKLCKDMGNLTKLRHL 691 (962)
Q Consensus 613 ~l~~Lr~L~L~~~~~~~~l-p~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 691 (962)
.+++|++|+|++| .+..+ |..|+.+++|++|+|++|.++.+++ ++.+++|++|+|++| .+..+|. .++|++|
T Consensus 32 ~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~~----~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELLV----GPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSS-CCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSS-EEEEEEE----CTTCCEE
T ss_pred cCCCccEEEeeCC-cCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCC-cCCCCCC----CCCcCEE
Confidence 3457888888888 56555 4678888888888888888876655 788888888888888 5666653 3788888
Q ss_pred ecCCCCCccccCCCCCCCCCCCccCCeEeCCCCCCCcccccCcccCCCeEEEeccCCCCChhhhhhhcCcCCcCCCceEE
Q 038637 692 RNSDAGLLEEMPKGFGKLTSLLTLGRFVVGKDSGSGLRELKSLTHLQGTLRISKLENVEDVGDACEAQLNNKVNLRTLLL 771 (962)
Q Consensus 692 ~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l 771 (962)
++++|. +..+|.. .+++|++|. +.+.. .....+..+..+++|+.|++
T Consensus 105 ~L~~N~-l~~~~~~--~l~~L~~L~--------------------------L~~N~----l~~~~~~~~~~l~~L~~L~L 151 (487)
T 3oja_A 105 HAANNN-ISRVSCS--RGQGKKNIY--------------------------LANNK----ITMLRDLDEGCRSRVQYLDL 151 (487)
T ss_dssp ECCSSC-CCCEEEC--CCSSCEEEE--------------------------CCSSC----CCSGGGBCGGGGSSEEEEEC
T ss_pred ECcCCc-CCCCCcc--ccCCCCEEE--------------------------CCCCC----CCCCCchhhcCCCCCCEEEC
Confidence 888877 3333321 233444431 11100 01111223444566666766
Q ss_pred eccCCCCCCccchhhHHhhhccCC-CCCCcCeEEEeecCCCCCCcCcCCCCCCCccEEEEeCCCCCCCCCCCCCCCCcCe
Q 038637 772 DWSARDVQNLDQCEFETRVLSMLK-PHRDVQELTIRGYGGTKFPIWLGDSSFSKLVNLKFGYCRMCTSLPSVGQLPLLKH 850 (962)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~lp~L~~ 850 (962)
+++... ...+..+. .+++|+.|++++|.+..+|... .+++|+.|+|++|.+.+..|.++.+++|+.
T Consensus 152 s~N~l~----------~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~---~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~ 218 (487)
T 3oja_A 152 KLNEID----------TVNFAELAASSDTLEHLNLQYNFIYDVKGQV---VFAKLKTLDLSSNKLAFMGPEFQSAAGVTW 218 (487)
T ss_dssp TTSCCC----------EEEGGGGGGGTTTCCEEECTTSCCCEEECCC---CCTTCCEEECCSSCCCEECGGGGGGTTCSE
T ss_pred CCCCCC----------CcChHHHhhhCCcccEEecCCCccccccccc---cCCCCCEEECCCCCCCCCCHhHcCCCCccE
Confidence 665511 11222332 4577888888887777665544 477888888888877665556777788888
Q ss_pred EeecCCCCceEeCccccCCCCCCCCCCcceeeccccccccccccccCCccccCcCCccceEeEccC
Q 038637 851 LKISGMDRVKSVGLEFYGSSCSVPFPSLETLSFSDMREWEEWISCGAGQEVDEVFPKLRKLSLFNC 916 (962)
Q Consensus 851 L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~c 916 (962)
|+|++|. +..++..+.. +++|+.|++++++-..... +.....++.|+.|++..+
T Consensus 219 L~Ls~N~-l~~lp~~l~~------l~~L~~L~l~~N~l~c~~~-----~~~~~~l~~L~~l~~~~~ 272 (487)
T 3oja_A 219 ISLRNNK-LVLIEKALRF------SQNLEHFDLRGNGFHCGTL-----RDFFSKNQRVQTVAKQTV 272 (487)
T ss_dssp EECTTSC-CCEECTTCCC------CTTCCEEECTTCCBCHHHH-----HHHHTTCHHHHHHHHHHH
T ss_pred EEecCCc-Ccccchhhcc------CCCCCEEEcCCCCCcCcch-----HHHHHhCCCCcEEecccc
Confidence 8888764 4455544332 6788888887765321111 112334667777766533
No 74
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.62 E-value=5e-15 Score=158.43 Aligned_cols=219 Identities=20% Similarity=0.145 Sum_probs=157.8
Q ss_pred cEEEeCCCcCcccccccccCCCcCCeEeccCCCCccccc-cccccccCcEEeeCCCcccccc-chhcccCCCccEEecCC
Q 038637 618 RVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPE-SINSLYNLHTILLENCWELKKL-CKDMGNLTKLRHLRNSD 695 (962)
Q Consensus 618 r~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~ 695 (962)
++++.+++ .+..+|..+ ..+|++|+|++|.++.+|. .+.++++|++|++++| .+..+ |..+..+++|++|++++
T Consensus 14 ~~~~c~~~-~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQ-GLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSS-CCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcC-CcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCC
Confidence 67888887 788888655 4799999999999998874 6889999999999999 55555 77889999999999999
Q ss_pred CCCcccc-CCCCCCCCCCCccCCeEeCCCCCCCcccccCcccCCCeEEEeccCCCCChhhhhhhcCcCCcCCCceEEecc
Q 038637 696 AGLLEEM-PKGFGKLTSLLTLGRFVVGKDSGSGLRELKSLTHLQGTLRISKLENVEDVGDACEAQLNNKVNLRTLLLDWS 774 (962)
Q Consensus 696 ~~~~~~~-p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 774 (962)
|..+..+ |..+..+++|++| ++.++
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L------------------------------------------------------~l~~n 115 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTL------------------------------------------------------HLDRC 115 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEE------------------------------------------------------ECTTS
T ss_pred CCCccccCHHHhcCCcCCCEE------------------------------------------------------ECCCC
Confidence 8634444 3444444444444 22222
Q ss_pred CCCCCCccchhhHHhhhccCCCCCCcCeEEEeecCCCCCCcCcCCCCCCCccEEEEeCCCCCCCCC-CCCCCCCcCeEee
Q 038637 775 ARDVQNLDQCEFETRVLSMLKPHRDVQELTIRGYGGTKFPIWLGDSSFSKLVNLKFGYCRMCTSLP-SVGQLPLLKHLKI 853 (962)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L~~L~L 853 (962)
... ...+..+..+++|+.|++++|.+..+|.... ..+++|+.|+|++|.+....+ .+..+++|++|++
T Consensus 116 ~l~----------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 184 (285)
T 1ozn_A 116 GLQ----------ELGPGLFRGLAALQYLYLQDNALQALPDDTF-RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL 184 (285)
T ss_dssp CCC----------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred cCC----------EECHhHhhCCcCCCEEECCCCcccccCHhHh-ccCCCccEEECCCCcccccCHHHhcCccccCEEEC
Confidence 100 0112345667899999999999888875432 378999999999998765444 5889999999999
Q ss_pred cCCCCceEeCccccCCCCCCCCCCcceeeccccccccccccccCCccccCcCCccceEeEccCC
Q 038637 854 SGMDRVKSVGLEFYGSSCSVPFPSLETLSFSDMREWEEWISCGAGQEVDEVFPKLRKLSLFNCY 917 (962)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~c~ 917 (962)
++|......+..+.. +++|+.|+++++ .+..+.. .....+++|+.|++++|+
T Consensus 185 ~~n~l~~~~~~~~~~------l~~L~~L~l~~n-~l~~~~~-----~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 185 HQNRVAHVHPHAFRD------LGRLMTLYLFAN-NLSALPT-----EALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CSSCCCEECTTTTTT------CTTCCEEECCSS-CCSCCCH-----HHHTTCTTCCEEECCSSC
T ss_pred CCCcccccCHhHccC------cccccEeeCCCC-cCCcCCH-----HHcccCcccCEEeccCCC
Confidence 997643333333332 899999999986 4444321 124568999999999974
No 75
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.61 E-value=9.6e-15 Score=161.47 Aligned_cols=292 Identities=13% Similarity=0.163 Sum_probs=178.8
Q ss_pred cCCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCC------CH
Q 038637 199 NEAEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDF------DV 272 (962)
Q Consensus 199 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~------~~ 272 (962)
....|+||+.++++|.+++... +++.|+|++|+|||||++++++.. . .+|+++.... +.
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~--------~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~~~ 74 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY--------PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHITR 74 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC--------SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCBCH
T ss_pred ChHhcCChHHHHHHHHHHHhcC--------CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCCCH
Confidence 3456999999999999998531 689999999999999999998742 1 6777765432 55
Q ss_pred HHHHHHHHHHhcc-----------------CCCCCCccHHHHHHHHHhHhCC-ceEEEEEecCCCCCc-------cchhh
Q 038637 273 FRVTKSILKSIAN-----------------DQSNNDDDLNLLQEKLKKQLSG-NKFLLVLDDVWNKNY-------NYWSI 327 (962)
Q Consensus 273 ~~~~~~il~~l~~-----------------~~~~~~~~~~~~~~~l~~~l~~-kr~LlVlDdv~~~~~-------~~~~~ 327 (962)
..+...+.+.+.. .......+...+.+.+.+..+. ++++||+||++.-+. ..+..
T Consensus 75 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~ 154 (350)
T 2qen_A 75 EELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLAL 154 (350)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHH
Confidence 6666666665532 0000123455666666665543 389999999966321 12222
Q ss_pred ccCCCCCCCCCcEEEEEecChhh-Hhh----------h-CCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHH
Q 038637 328 LSCPFGAGAPGSKIVVTTRNLDV-ANL----------T-RAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGE 395 (962)
Q Consensus 328 l~~~l~~~~~gs~ilvTtR~~~v-~~~----------~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~ 395 (962)
+..... ...+.++|+|++...+ ... . .....+++.+|+.+|+.+++.... ...+.. ...+.+.
T Consensus 155 L~~~~~-~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~-~~~~~~---~~~~~~~ 229 (350)
T 2qen_A 155 FAYAYD-SLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGF-REVNLD---VPENEIE 229 (350)
T ss_dssp HHHHHH-HCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHH-HTTTCC---CCHHHHH
T ss_pred HHHHHH-hcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHH-HHcCCC---CCHHHHH
Confidence 322111 1257889999887643 221 0 112368899999999999997653 211111 1246788
Q ss_pred HHHHhcCCChHHHHHHHhhhcCCCChhHHH-HHHhhhhhcccccccCchhHHHhhccCC---chhhHhHHhhhcCCCCCc
Q 038637 396 KIAKKCKGLPLAAKTLGGLLRGKDDLTDWE-FVLNTDIWKLQEENYGIIPALRVSYHFL---PSQLKQCFAYCSLFPKDY 471 (962)
Q Consensus 396 ~I~~~c~glPLai~~~~~~L~~~~~~~~w~-~~~~~~~~~~~~~~~~i~~~l~~sy~~L---~~~~k~cfl~~~~fp~~~ 471 (962)
.|+..|+|+|+++..++..+....+...+. ...+. +...+.-.+..+ ++..+..+..+|. +
T Consensus 230 ~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~l~~~~~~~~~~l~~la~---g- 294 (350)
T 2qen_A 230 EAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEV-----------AKGLIMGELEELRRRSPRYVDILRAIAL---G- 294 (350)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHH-----------HHHHHHHHHHHHHHHCHHHHHHHHHHHT---T-
T ss_pred HHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHH-----------HHHHHHHHHHHHHhCChhHHHHHHHHHh---C-
Confidence 999999999999999987643211221111 11111 111111111222 7888999999987 2
Q ss_pred eeCHHHHHHHHHHcCCcccccCCCcHHHHHHHHHHHHhhCCCcccccCCCCcEEE-cchhhHHHH
Q 038637 472 EFQEEEIILLWTAEGFLDQEYNGRKMEDLGREFVRELHSRSLFQQSSRDASRFVM-HDLINDLAR 535 (962)
Q Consensus 472 ~i~~~~li~~W~aeg~i~~~~~~~~~e~~~~~~l~~L~~r~ll~~~~~~~~~~~m-Hdli~d~a~ 535 (962)
.++...+.....+.. ++. .......+++.|.+.++|.... ..|.+ |++++++.+
T Consensus 295 ~~~~~~l~~~~~~~~------~~~-~~~~~~~~l~~L~~~gli~~~~---~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 295 YNRWSLIRDYLAVKG------TKI-PEPRLYALLENLKKMNWIVEED---NTYKIADPVVATVLR 349 (350)
T ss_dssp CCSHHHHHHHHHHTT------CCC-CHHHHHHHHHHHHHTTSEEEET---TEEEESSHHHHHHHT
T ss_pred CCCHHHHHHHHHHHh------CCC-CHHHHHHHHHHHHhCCCEEecC---CEEEEecHHHHHHHc
Confidence 244455544332211 011 2345778999999999998753 35655 778877653
No 76
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.59 E-value=1.3e-16 Score=175.33 Aligned_cols=236 Identities=18% Similarity=0.172 Sum_probs=132.1
Q ss_pred CcccEEEeCCCcCcccccccccCCCcCCeEeccCCCCcc--ccccccccccCcEEeeCCCccccccchhcccCCCccEEe
Q 038637 615 PRLRVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQI--LPESINSLYNLHTILLENCWELKKLCKDMGNLTKLRHLR 692 (962)
Q Consensus 615 ~~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~~--lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 692 (962)
+.+++|++++| .+...+..+..+++|++|+|++|.+.. +|..+..+++|++|++++|......|..+..+++|++|+
T Consensus 70 ~~l~~L~l~~n-~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRS-FMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTC-EECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCc-cccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 56666666666 444444445566666666666666652 566666666666666666643334555566666666666
Q ss_pred cCCCCCccccCCCCCCCCCCCccCCeEeCCCCCCCcccccCcccCCCeEEEeccCCCCChhhhhhhcCcCCcCCCceEEe
Q 038637 693 NSDAGLLEEMPKGFGKLTSLLTLGRFVVGKDSGSGLRELKSLTHLQGTLRISKLENVEDVGDACEAQLNNKVNLRTLLLD 772 (962)
Q Consensus 693 l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 772 (962)
+++|..+.. ..+...+.++++|+.|+++
T Consensus 149 L~~~~~l~~----------------------------------------------------~~l~~~~~~~~~L~~L~l~ 176 (336)
T 2ast_B 149 LSGCSGFSE----------------------------------------------------FALQTLLSSCSRLDELNLS 176 (336)
T ss_dssp CTTCBSCCH----------------------------------------------------HHHHHHHHHCTTCCEEECC
T ss_pred CCCCCCCCH----------------------------------------------------HHHHHHHhcCCCCCEEcCC
Confidence 666521211 0111122233445555555
Q ss_pred cc-CCCCCCccchhhHHhhhccCCCCC-CcCeEEEeecC--C--CCCCcCcCCCCCCCccEEEEeCCCC-CC-CCCCCCC
Q 038637 773 WS-ARDVQNLDQCEFETRVLSMLKPHR-DVQELTIRGYG--G--TKFPIWLGDSSFSKLVNLKFGYCRM-CT-SLPSVGQ 844 (962)
Q Consensus 773 ~~-~~~~~~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~--~--~~~p~~~~~~~l~~L~~L~L~~~~~-~~-~l~~l~~ 844 (962)
++ . +. ...++..+..++ +|+.|++++|. + ..+|..+. .+++|+.|++++|.. .+ .++.++.
T Consensus 177 ~~~~-----l~----~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~--~~~~L~~L~l~~~~~l~~~~~~~l~~ 245 (336)
T 2ast_B 177 WCFD-----FT----EKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR--RCPNLVHLDLSDSVMLKNDCFQEFFQ 245 (336)
T ss_dssp CCTT-----CC----HHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHH--HCTTCSEEECTTCTTCCGGGGGGGGG
T ss_pred CCCC-----cC----hHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHh--hCCCCCEEeCCCCCcCCHHHHHHHhC
Confidence 44 2 11 111223334455 77777777763 2 22344443 578888888888884 32 3446778
Q ss_pred CCCcCeEeecCCCCceEeCccccCCCCCCCCCCcceeeccccccccccccccCCccccCcCCccceEeEccCCCccccCC
Q 038637 845 LPLLKHLKISGMDRVKSVGLEFYGSSCSVPFPSLETLSFSDMREWEEWISCGAGQEVDEVFPKLRKLSLFNCYKLQGTLP 924 (962)
Q Consensus 845 lp~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~lp 924 (962)
+++|++|++++|..+...+..... .+++|+.|++++| +..... .....+|..|++++| ++++..|
T Consensus 246 l~~L~~L~l~~~~~~~~~~~~~l~-----~~~~L~~L~l~~~--i~~~~~-------~~l~~~l~~L~l~~n-~l~~~~~ 310 (336)
T 2ast_B 246 LNYLQHLSLSRCYDIIPETLLELG-----EIPTLKTLQVFGI--VPDGTL-------QLLKEALPHLQINCS-HFTTIAR 310 (336)
T ss_dssp CTTCCEEECTTCTTCCGGGGGGGG-----GCTTCCEEECTTS--SCTTCH-------HHHHHHSTTSEESCC-CSCCTTC
T ss_pred CCCCCEeeCCCCCCCCHHHHHHHh-----cCCCCCEEeccCc--cCHHHH-------HHHHhhCcceEEecc-cCccccC
Confidence 889999999888633322211111 2889999999887 222111 111134666777654 8887667
Q ss_pred CCCCC
Q 038637 925 KRLLL 929 (962)
Q Consensus 925 ~~l~~ 929 (962)
....+
T Consensus 311 ~~~~~ 315 (336)
T 2ast_B 311 PTIGN 315 (336)
T ss_dssp SSCSS
T ss_pred Ccccc
Confidence 55443
No 77
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.59 E-value=8.3e-16 Score=177.14 Aligned_cols=238 Identities=12% Similarity=0.082 Sum_probs=173.0
Q ss_pred CCCCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCcccccccccCCCcCCeEeccCCCCcccccccccc
Q 038637 582 DVEHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSL 661 (962)
Q Consensus 582 ~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L 661 (962)
.+++|+.|.+.++. +. .++...|..+++|++|+|++| .+...+. ++.+++|++|+|++|.++.+|. .
T Consensus 32 ~~~~L~~L~Ls~n~------l~-~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~ 98 (487)
T 3oja_A 32 SAWNVKELDLSGNP------LS-QISAADLAPFTKLELLNLSSN-VLYETLD-LESLSTLRTLDLNNNYVQELLV----G 98 (487)
T ss_dssp TGGGCCEEECCSSC------CC-CCCGGGGTTCTTCCEEECTTS-CCEEEEE-CTTCTTCCEEECCSSEEEEEEE----C
T ss_pred cCCCccEEEeeCCc------CC-CCCHHHHhCCCCCCEEEeeCC-CCCCCcc-cccCCCCCEEEecCCcCCCCCC----C
Confidence 45589999888753 22 345556889999999999999 6766655 9999999999999999998774 3
Q ss_pred ccCcEEeeCCCccccccchhcccCCCccEEecCCCCCccccCCCCCCCCCCCccCCeEeCCCCCCCcccccCcccCCCeE
Q 038637 662 YNLHTILLENCWELKKLCKDMGNLTKLRHLRNSDAGLLEEMPKGFGKLTSLLTLGRFVVGKDSGSGLRELKSLTHLQGTL 741 (962)
Q Consensus 662 ~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L 741 (962)
++|++|++++| .+..+|. ..+++|++|++++|......|..++.+++|++|.... . .+.
T Consensus 99 ~~L~~L~L~~N-~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~------N---------~l~--- 157 (487)
T 3oja_A 99 PSIETLHAANN-NISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL------N---------EID--- 157 (487)
T ss_dssp TTCCEEECCSS-CCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTT------S---------CCC---
T ss_pred CCcCEEECcCC-cCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCC------C---------CCC---
Confidence 89999999999 6666654 3578999999999985555566778888777773210 0 111
Q ss_pred EEeccCCCCChhhhhhhcC-cCCcCCCceEEeccCCCCCCccchhhHHhhhccCCCCCCcCeEEEeecCCCCCCcCcCCC
Q 038637 742 RISKLENVEDVGDACEAQL-NNKVNLRTLLLDWSARDVQNLDQCEFETRVLSMLKPHRDVQELTIRGYGGTKFPIWLGDS 820 (962)
Q Consensus 742 ~i~~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~ 820 (962)
...+..+ ..+++|+.|+++++... .. .....+++|+.|++++|.+..+|..+.
T Consensus 158 ------------~~~~~~l~~~l~~L~~L~Ls~N~l~-----------~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~-- 211 (487)
T 3oja_A 158 ------------TVNFAELAASSDTLEHLNLQYNFIY-----------DV-KGQVVFAKLKTLDLSSNKLAFMGPEFQ-- 211 (487)
T ss_dssp ------------EEEGGGGGGGTTTCCEEECTTSCCC-----------EE-ECCCCCTTCCEEECCSSCCCEECGGGG--
T ss_pred ------------CcChHHHhhhCCcccEEecCCCccc-----------cc-cccccCCCCCEEECCCCCCCCCCHhHc--
Confidence 0111222 25678888888887621 11 234468899999999999998888764
Q ss_pred CCCCccEEEEeCCCCCCCCCCCCCCCCcCeEeecCCCCc-eEeCccccCCCCCCCCCCcceeeccc
Q 038637 821 SFSKLVNLKFGYCRMCTSLPSVGQLPLLKHLKISGMDRV-KSVGLEFYGSSCSVPFPSLETLSFSD 885 (962)
Q Consensus 821 ~l~~L~~L~L~~~~~~~~l~~l~~lp~L~~L~L~~~~~~-~~~~~~~~~~~~~~~f~~L~~L~l~~ 885 (962)
.+++|+.|+|++|.+....+.++.+++|+.|++++|+.. ..++..+ +. ++.|+.|.+..
T Consensus 212 ~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~-~~-----l~~L~~l~~~~ 271 (487)
T 3oja_A 212 SAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFF-SK-----NQRVQTVAKQT 271 (487)
T ss_dssp GGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHH-TT-----CHHHHHHHHHH
T ss_pred CCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHH-Hh-----CCCCcEEeccc
Confidence 789999999999998763347888999999999998654 1222222 21 77777777753
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.58 E-value=1.7e-14 Score=152.96 Aligned_cols=82 Identities=22% Similarity=0.312 Sum_probs=55.4
Q ss_pred CCCCcccEEEeCCCcCcccccccccCCCcCCeEeccCCCCccccccccccccCcEEeeCCCccccccch-hcccCCCccE
Q 038637 612 NHLPRLRVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLENCWELKKLCK-DMGNLTKLRH 690 (962)
Q Consensus 612 ~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~ 690 (962)
..+++|+.|++++| .+..++ .+..+++|++|+|++|.+..+| .+.++++|++|++++| .+..+|. .+..+++|++
T Consensus 38 ~~l~~L~~L~l~~~-~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 38 NELNSIDQIIANNS-DIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGN-QLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHTTCCEEECTTS-CCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCE
T ss_pred ccccceeeeeeCCC-Cccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCC-ccCccChhHhcCCcCCCE
Confidence 34566777777777 565554 3667777777777777777654 5677777777777777 4545444 3567777777
Q ss_pred EecCCCC
Q 038637 691 LRNSDAG 697 (962)
Q Consensus 691 L~l~~~~ 697 (962)
|++++|.
T Consensus 114 L~L~~n~ 120 (272)
T 3rfs_A 114 LVLVENQ 120 (272)
T ss_dssp EECTTSC
T ss_pred EECCCCc
Confidence 7777765
No 79
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.57 E-value=4.1e-15 Score=161.23 Aligned_cols=78 Identities=19% Similarity=0.174 Sum_probs=36.6
Q ss_pred CCCcCCeEeccCCCCc-cccccc--cccccCcEEeeCCCccccccchhcccC-----CCccEEecCCCCCccccCCCCCC
Q 038637 637 NLKHLRCLNLSRTRIQ-ILPESI--NSLYNLHTILLENCWELKKLCKDMGNL-----TKLRHLRNSDAGLLEEMPKGFGK 708 (962)
Q Consensus 637 ~L~~Lr~L~Ls~~~i~-~lp~~i--~~L~~L~~L~L~~~~~l~~lp~~i~~L-----~~L~~L~l~~~~~~~~~p~~i~~ 708 (962)
++.+|++|+|++|.++ .+|..+ +.+++|++|++++| .+..+|..+..+ ++|++|++++|......|..++.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 4455555555555554 344443 45555555555555 333334444444 55555555555422222234444
Q ss_pred CCCCCcc
Q 038637 709 LTSLLTL 715 (962)
Q Consensus 709 l~~L~~L 715 (962)
+++|++|
T Consensus 172 l~~L~~L 178 (312)
T 1wwl_A 172 FPALSTL 178 (312)
T ss_dssp CSSCCEE
T ss_pred CCCCCEE
Confidence 4444444
No 80
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.57 E-value=5.1e-15 Score=159.97 Aligned_cols=190 Identities=15% Similarity=0.224 Sum_probs=119.9
Q ss_pred CCCcccEEEeCCCcCcccccccccCCCcCCeEeccCCCCccccccccccccCcEEeeCCCccccccchhcccCCCccEEe
Q 038637 613 HLPRLRVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLENCWELKKLCKDMGNLTKLRHLR 692 (962)
Q Consensus 613 ~l~~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 692 (962)
.+++|+.|++++| .+..+| .+..+++|++|+|++|.+..+|. +..+++|++|++++| .+..+| .+..+++|++|+
T Consensus 39 ~l~~L~~L~l~~~-~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 39 DLDGITTLSAFGT-GVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGN-PLKNVS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSC-CCSCCG-GGTTCTTCCEEE
T ss_pred HcCCcCEEEeeCC-CccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCC-cCCCch-hhcCCCCCCEEE
Confidence 4566777777777 566666 46777777777777777777766 777777777777777 466655 477777777777
Q ss_pred cCCCCCccccCCCCCCCCCCCccCCeEeCCCCCCCcccccCcccCCCeEEEeccCCCCChhhhhhhcCcCCcCCCceEEe
Q 038637 693 NSDAGLLEEMPKGFGKLTSLLTLGRFVVGKDSGSGLRELKSLTHLQGTLRISKLENVEDVGDACEAQLNNKVNLRTLLLD 772 (962)
Q Consensus 693 l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 772 (962)
+++|. +..+|. ++.+++|++|..... . +. .. ..+..+++|+.|+++
T Consensus 114 l~~n~-l~~~~~-l~~l~~L~~L~l~~n------~---------l~------------~~-----~~l~~l~~L~~L~l~ 159 (308)
T 1h6u_A 114 LTSTQ-ITDVTP-LAGLSNLQVLYLDLN------Q---------IT------------NI-----SPLAGLTNLQYLSIG 159 (308)
T ss_dssp CTTSC-CCCCGG-GTTCTTCCEEECCSS------C---------CC------------CC-----GGGGGCTTCCEEECC
T ss_pred CCCCC-CCCchh-hcCCCCCCEEECCCC------c---------cC------------cC-----ccccCCCCccEEEcc
Confidence 77776 444442 555555555421100 0 00 00 003344556666666
Q ss_pred ccCCCCCCccchhhHHhhhccCCCCCCcCeEEEeecCCCCCCcCcCCCCCCCccEEEEeCCCCCCCCCCCCCCCCcCeEe
Q 038637 773 WSARDVQNLDQCEFETRVLSMLKPHRDVQELTIRGYGGTKFPIWLGDSSFSKLVNLKFGYCRMCTSLPSVGQLPLLKHLK 852 (962)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~lp~L~~L~ 852 (962)
.+... ..+ .+..+++|+.|++++|.+..+|. + ..+++|+.|+|++|.+.+ ++.+..+++|+.|+
T Consensus 160 ~n~l~-----------~~~-~l~~l~~L~~L~l~~n~l~~~~~-l--~~l~~L~~L~L~~N~l~~-~~~l~~l~~L~~L~ 223 (308)
T 1h6u_A 160 NAQVS-----------DLT-PLANLSKLTTLKADDNKISDISP-L--ASLPNLIEVHLKNNQISD-VSPLANTSNLFIVT 223 (308)
T ss_dssp SSCCC-----------CCG-GGTTCTTCCEEECCSSCCCCCGG-G--GGCTTCCEEECTTSCCCB-CGGGTTCTTCCEEE
T ss_pred CCcCC-----------CCh-hhcCCCCCCEEECCCCccCcChh-h--cCCCCCCEEEccCCccCc-cccccCCCCCCEEE
Confidence 55411 111 15567788888888887777765 3 267888888888887654 44577888888888
Q ss_pred ecCCC
Q 038637 853 ISGMD 857 (962)
Q Consensus 853 L~~~~ 857 (962)
+++|+
T Consensus 224 l~~N~ 228 (308)
T 1h6u_A 224 LTNQT 228 (308)
T ss_dssp EEEEE
T ss_pred ccCCe
Confidence 88764
No 81
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.57 E-value=3.2e-14 Score=150.75 Aligned_cols=77 Identities=19% Similarity=0.329 Sum_probs=43.7
Q ss_pred ccEEEeCCCcCcccccccccCCCcCCeEeccCCCCccccc-cccccccCcEEeeCCCccccccchh-cccCCCccEEecC
Q 038637 617 LRVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPE-SINSLYNLHTILLENCWELKKLCKD-MGNLTKLRHLRNS 694 (962)
Q Consensus 617 Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~ 694 (962)
++.++++++ .+..+|..+. .+|++|+|++|.++.+|. .+.++++|++|++++| .+..+|.. +..+++|++|+++
T Consensus 18 ~~~l~~~~~-~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 18 KNSVDCSSK-KLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTEEECTTS-CCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECC
T ss_pred CCEEEccCC-CCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECC
Confidence 455666655 4555555443 456666666666665554 4556666666666665 44445443 2556666666666
Q ss_pred CCC
Q 038637 695 DAG 697 (962)
Q Consensus 695 ~~~ 697 (962)
+|.
T Consensus 94 ~n~ 96 (270)
T 2o6q_A 94 DNK 96 (270)
T ss_dssp SSC
T ss_pred CCc
Confidence 555
No 82
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.56 E-value=2.4e-14 Score=153.02 Aligned_cols=63 Identities=19% Similarity=0.165 Sum_probs=38.8
Q ss_pred CCCCCCcCeEEEeecCCCCCCcCcCCCCCCCccEEEEeCCCCCCCCCCCCCCCCcCeEeecCCC
Q 038637 794 LKPHRDVQELTIRGYGGTKFPIWLGDSSFSKLVNLKFGYCRMCTSLPSVGQLPLLKHLKISGMD 857 (962)
Q Consensus 794 l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~lp~L~~L~L~~~~ 857 (962)
+..+++|+.|++++|.+..+|..+. ..+++|+.|+|++|.+....+.+..+++|+.|+|.+|+
T Consensus 144 ~~~l~~L~~L~L~~N~l~~l~~~~~-~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 144 LTPTPKLEKLSLANNNLTELPAGLL-NGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TTTCTTCCEEECTTSCCSCCCTTTT-TTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred cccccCCCEEECCCCcCCccCHHHh-cCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence 4456677777777776666665443 25667777777777655322245556667777776654
No 83
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.56 E-value=7.5e-14 Score=154.72 Aligned_cols=292 Identities=13% Similarity=0.113 Sum_probs=172.6
Q ss_pred cCCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCC-----CCHH
Q 038637 199 NEAEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSED-----FDVF 273 (962)
Q Consensus 199 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~-----~~~~ 273 (962)
....|+||+.+++.|.+ +. . +++.|+|++|+|||||++++++. ... ..+|+++... .+..
T Consensus 11 ~~~~~~gR~~el~~L~~-l~--------~-~~v~i~G~~G~GKT~L~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~ 75 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LR--------A-PITLVLGLRRTGKSSIIKIGINE--LNL---PYIYLDLRKFEERNYISYK 75 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TC--------S-SEEEEEESTTSSHHHHHHHHHHH--HTC---CEEEEEGGGGTTCSCCCHH
T ss_pred CHHHhcChHHHHHHHHH-hc--------C-CcEEEECCCCCCHHHHHHHHHHh--cCC---CEEEEEchhhccccCCCHH
Confidence 34569999999999998 72 1 58999999999999999999874 222 2578887642 3445
Q ss_pred HHHHHHHHHhcc-------------CC-----CC----------CCccHHHHHHHHHhHhCCceEEEEEecCCCCCc---
Q 038637 274 RVTKSILKSIAN-------------DQ-----SN----------NDDDLNLLQEKLKKQLSGNKFLLVLDDVWNKNY--- 322 (962)
Q Consensus 274 ~~~~~il~~l~~-------------~~-----~~----------~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--- 322 (962)
.+...+.+.+.. .. .. .......+.+.+.+..+ ++++|||||++.-+.
T Consensus 76 ~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~ 154 (357)
T 2fna_A 76 DFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRG 154 (357)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTT
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCc
Confidence 555444443311 00 00 12344555556655433 499999999965321
Q ss_pred cchhhccCCCCCCCCCcEEEEEecChhhHh-h---------h-C-CCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcch
Q 038637 323 NYWSILSCPFGAGAPGSKIVVTTRNLDVAN-L---------T-R-AYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSL 390 (962)
Q Consensus 323 ~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~-~---------~-~-~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~ 390 (962)
..|..+...+.....+.++|+|++...... . . + ....+.+.+|+.+++.+++....-. .+.... .
T Consensus 155 ~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~-~~~~~~-~- 231 (357)
T 2fna_A 155 VNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQE-ADIDFK-D- 231 (357)
T ss_dssp CCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHH-HTCCCC-C-
T ss_pred hhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHH-cCCCCC-c-
Confidence 122222222222124678999999865322 1 1 1 1246889999999999999874311 111111 1
Q ss_pred HHHHHHHHHhcCCChHHHHHHHhhhcCCCChhHHHH-HHhhhhhcccccccCchhHHH-hhc--cCCchhhHhHHhhhcC
Q 038637 391 KDVGEKIAKKCKGLPLAAKTLGGLLRGKDDLTDWEF-VLNTDIWKLQEENYGIIPALR-VSY--HFLPSQLKQCFAYCSL 466 (962)
Q Consensus 391 ~~~~~~I~~~c~glPLai~~~~~~L~~~~~~~~w~~-~~~~~~~~~~~~~~~i~~~l~-~sy--~~L~~~~k~cfl~~~~ 466 (962)
...|++.|+|+|+++..++..+........|.. +.+... ..+...+. +.+ ..||+..+..+..+|+
T Consensus 232 ---~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~l~~~~~~~l~~la~ 301 (357)
T 2fna_A 232 ---YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAK-------KLILKEFENFLHGREIARKRYLNIMRTLSK 301 (357)
T ss_dssp ---HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-------HHHHHHHHHHHTTCGGGHHHHHHHHHHHTT
T ss_pred ---HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHH-------HHHHHHHHHHhhccccccHHHHHHHHHHHc
Confidence 178999999999999999877643322223321 111100 00111111 222 1688999999999998
Q ss_pred CCCCceeCHHHHHHHHH-HcCCcccccCCCcHHHHHHHHHHHHhhCCCcccccCCCCcEE-EcchhhHHH
Q 038637 467 FPKDYEFQEEEIILLWT-AEGFLDQEYNGRKMEDLGREFVRELHSRSLFQQSSRDASRFV-MHDLINDLA 534 (962)
Q Consensus 467 fp~~~~i~~~~li~~W~-aeg~i~~~~~~~~~e~~~~~~l~~L~~r~ll~~~~~~~~~~~-mHdli~d~a 534 (962)
+. +...+....- ..|. .........+++.|.+.++|.... ..|. .|++++++.
T Consensus 302 ---g~--~~~~l~~~~~~~~g~-------~~~~~~~~~~L~~L~~~gli~~~~---~~y~f~~~~~~~~l 356 (357)
T 2fna_A 302 ---CG--KWSDVKRALELEEGI-------EISDSEIYNYLTQLTKHSWIIKEG---EKYCPSEPLISLAF 356 (357)
T ss_dssp ---CB--CHHHHHHHHHHHHCS-------CCCHHHHHHHHHHHHHTTSEEESS---SCEEESSHHHHHHT
T ss_pred ---CC--CHHHHHHHHHHhcCC-------CCCHHHHHHHHHHHHhCCCEEecC---CEEEecCHHHHHhh
Confidence 22 4444432210 1121 011345678999999999998753 3566 477887763
No 84
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.55 E-value=8.9e-16 Score=166.49 Aligned_cols=248 Identities=19% Similarity=0.126 Sum_probs=172.9
Q ss_pred hCCCCcccEEEeCCCcCcccccccccCCCcCCeEeccCCCCc--ccccccc-------ccccCcEEeeCCCccccccchh
Q 038637 611 LNHLPRLRVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQ--ILPESIN-------SLYNLHTILLENCWELKKLCKD 681 (962)
Q Consensus 611 l~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~--~lp~~i~-------~L~~L~~L~L~~~~~l~~lp~~ 681 (962)
+...++|+.|++++| .+ .+|..+... |++|+|++|.+. .+|..+. ++++|++|++++|...+.+|..
T Consensus 39 ~~~~~~L~~l~l~~n-~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVD-TE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEECTTHHHHCC-TT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EccCCCceeEeeccc-cc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 455678999999999 56 888777655 999999999986 5677666 7999999999999555578887
Q ss_pred c--ccCCCccEEecCCCCCccccCCCCCCC-----CCCCccCCeEeCCCCCCCcccccCcccCCCeEEEeccCCCCChhh
Q 038637 682 M--GNLTKLRHLRNSDAGLLEEMPKGFGKL-----TSLLTLGRFVVGKDSGSGLRELKSLTHLQGTLRISKLENVEDVGD 754 (962)
Q Consensus 682 i--~~L~~L~~L~l~~~~~~~~~p~~i~~l-----~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~ 754 (962)
+ ..+++|++|++++|. +...|..++.+ ++|++| .+.+.. ...
T Consensus 115 ~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L--------------------------~L~~N~----l~~ 163 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVL--------------------------SIAQAH----SLN 163 (312)
T ss_dssp SSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEE--------------------------EEESCS----CCC
T ss_pred HHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEE--------------------------EeeCCC----Ccc
Confidence 6 899999999999998 44457666555 555555 222111 011
Q ss_pred hhhhcCcCCcCCCceEEeccCCCCCCccchhhHHhhhccC--CCCCCcCeEEEeecCCCCCCc---CcCCCCCCCccEEE
Q 038637 755 ACEAQLNNKVNLRTLLLDWSARDVQNLDQCEFETRVLSML--KPHRDVQELTIRGYGGTKFPI---WLGDSSFSKLVNLK 829 (962)
Q Consensus 755 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~p~---~~~~~~l~~L~~L~ 829 (962)
..+..+..+++|+.|+++++... . ....+..+ ..+++|+.|++++|.+..+|. ++. ..+++|+.|+
T Consensus 164 ~~~~~~~~l~~L~~L~Ls~N~l~-----~---~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~-~~l~~L~~L~ 234 (312)
T 1wwl_A 164 FSCEQVRVFPALSTLDLSDNPEL-----G---ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA-AARVQLQGLD 234 (312)
T ss_dssp CCTTTCCCCSSCCEEECCSCTTC-----H---HHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHH-HTTCCCSEEE
T ss_pred chHHHhccCCCCCEEECCCCCcC-----c---chHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHH-hcCCCCCEEE
Confidence 11234566778888888776511 0 11123333 677899999999988774432 221 2568899999
Q ss_pred EeCCCCCCCC--CCCCCCCCcCeEeecCCCCceEeCccccCCCCCCCCCCcceeeccccccccccccccCCccccCcCCc
Q 038637 830 FGYCRMCTSL--PSVGQLPLLKHLKISGMDRVKSVGLEFYGSSCSVPFPSLETLSFSDMREWEEWISCGAGQEVDEVFPK 907 (962)
Q Consensus 830 L~~~~~~~~l--~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~ 907 (962)
|++|.+.+.. +.+..+++|++|++++|. ++.++..+ +++|+.|+++++ .++.++. ...+|+
T Consensus 235 Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~--------~~~L~~L~Ls~N-~l~~~p~-------~~~l~~ 297 (312)
T 1wwl_A 235 LSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKGL--------PAKLSVLDLSYN-RLDRNPS-------PDELPQ 297 (312)
T ss_dssp CTTSCCCSSCCCSCCCCCTTCCEEECTTSC-CSSCCSSC--------CSEEEEEECCSS-CCCSCCC-------TTTSCE
T ss_pred CCCCcCCcccchhhhhhcCCCCEEECCCCc-cChhhhhc--------cCCceEEECCCC-CCCCChh-------HhhCCC
Confidence 9999887655 356678999999999875 34444322 378999999985 4555421 456899
Q ss_pred cceEeEccCCCcc
Q 038637 908 LRKLSLFNCYKLQ 920 (962)
Q Consensus 908 L~~L~l~~c~~L~ 920 (962)
|+.|++++| .++
T Consensus 298 L~~L~L~~N-~l~ 309 (312)
T 1wwl_A 298 VGNLSLKGN-PFL 309 (312)
T ss_dssp EEEEECTTC-TTT
T ss_pred CCEEeccCC-CCC
Confidence 999999997 555
No 85
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.54 E-value=8.1e-14 Score=144.71 Aligned_cols=65 Identities=23% Similarity=0.385 Sum_probs=36.8
Q ss_pred cccccccccCCCcCCeEeccCCCCccccc-cccccccCcEEeeCCCccccccch-hcccCCCccEEecCC
Q 038637 628 IFNLPNEIGNLKHLRCLNLSRTRIQILPE-SINSLYNLHTILLENCWELKKLCK-DMGNLTKLRHLRNSD 695 (962)
Q Consensus 628 ~~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~ 695 (962)
+..+|. +. .+|++|+|++|.++.+|. .+.++++|++|++++|..+..+|. .+..+++|++|++++
T Consensus 23 l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~ 89 (239)
T 2xwt_C 23 IQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89 (239)
T ss_dssp CSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEE
T ss_pred ccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCC
Confidence 445554 32 256666666666665555 455666666666666632444443 455566666666655
No 86
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.54 E-value=4.5e-14 Score=150.91 Aligned_cols=79 Identities=22% Similarity=0.174 Sum_probs=37.7
Q ss_pred cccEEEeCCCcCcccc-cccccCCCcCCeEeccCCCCccccccccccccCcEEeeCCCccccccchhcccCCCccEEecC
Q 038637 616 RLRVFSLCGYCNIFNL-PNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLENCWELKKLCKDMGNLTKLRHLRNS 694 (962)
Q Consensus 616 ~Lr~L~L~~~~~~~~l-p~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~ 694 (962)
.|++|+|++| .+..+ |..+.++++|++|+|++|.++.+|.. +.+++|++|++++| .+..+|..+..+++|++|+++
T Consensus 32 ~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~ 108 (290)
T 1p9a_G 32 DTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVS 108 (290)
T ss_dssp TCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECC
T ss_pred CCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCC-cCCcCchhhccCCCCCEEECC
Confidence 4455555554 33333 23444555555555555555544433 44455555555554 444444444445555555555
Q ss_pred CCC
Q 038637 695 DAG 697 (962)
Q Consensus 695 ~~~ 697 (962)
+|.
T Consensus 109 ~N~ 111 (290)
T 1p9a_G 109 FNR 111 (290)
T ss_dssp SSC
T ss_pred CCc
Confidence 444
No 87
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.54 E-value=2e-14 Score=152.91 Aligned_cols=202 Identities=18% Similarity=0.154 Sum_probs=124.9
Q ss_pred CcccEEEeCCCcCcccccc-cccCCCcCCeEeccCCCCccccc-cccccccCcEEeeCCCccccccc-hhcccCCCccEE
Q 038637 615 PRLRVFSLCGYCNIFNLPN-EIGNLKHLRCLNLSRTRIQILPE-SINSLYNLHTILLENCWELKKLC-KDMGNLTKLRHL 691 (962)
Q Consensus 615 ~~Lr~L~L~~~~~~~~lp~-~i~~L~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L 691 (962)
+.|++|+|++| .+..++. .+.++++|++|+|++|.+..+|. .+.++++|++|++++| .+..++ ..+..+++|++|
T Consensus 28 ~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 28 FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp TTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEE
T ss_pred CCccEEECCCC-cccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC-ccCccChhhhcCCccccEE
Confidence 45788888887 5666653 67778888888888888776655 5777888888888887 444443 567778888888
Q ss_pred ecCCCCCccccCC-CCCCCCCCCccCCeEeCCCCCCCcccccCcccCCCeEEEeccCCCCChhhhhhhcCcCCcCCCceE
Q 038637 692 RNSDAGLLEEMPK-GFGKLTSLLTLGRFVVGKDSGSGLRELKSLTHLQGTLRISKLENVEDVGDACEAQLNNKVNLRTLL 770 (962)
Q Consensus 692 ~l~~~~~~~~~p~-~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~ 770 (962)
++++|. +..++. .++.+++|++|...... +. . ..++..+..+++|+.|+
T Consensus 106 ~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~---------------l~---------~-----~~l~~~~~~l~~L~~L~ 155 (276)
T 2z62_A 106 VAVETN-LASLENFPIGHLKTLKELNVAHNL---------------IQ---------S-----FKLPEYFSNLTNLEHLD 155 (276)
T ss_dssp ECTTSC-CCCSTTCCCTTCTTCCEEECCSSC---------------CC---------C-----CCCCGGGGGCTTCCEEE
T ss_pred ECCCCC-ccccCchhcccCCCCCEEECcCCc---------------cc---------e-----ecCchhhccCCCCCEEE
Confidence 887776 333332 45666666555211100 00 0 00122344556667777
Q ss_pred EeccCCCCCCccchhhHHhhhccCCCCCCcC-eEEEeecCCCCCCcCcCCCCCCCccEEEEeCCCCCCCCC-CCCCCCCc
Q 038637 771 LDWSARDVQNLDQCEFETRVLSMLKPHRDVQ-ELTIRGYGGTKFPIWLGDSSFSKLVNLKFGYCRMCTSLP-SVGQLPLL 848 (962)
Q Consensus 771 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L 848 (962)
++++... ... ...+..+..++.|. .|++++|.+..+|.... ...+|+.|+|++|.+....+ .++.+++|
T Consensus 156 Ls~N~l~--~~~-----~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~--~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 226 (276)
T 2z62_A 156 LSSNKIQ--SIY-----CTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF--KEIRLKELALDTNQLKSVPDGIFDRLTSL 226 (276)
T ss_dssp CCSSCCC--EEC-----GGGGHHHHTCTTCCEEEECCSSCCCEECTTSS--CSCCEEEEECCSSCCSCCCTTTTTTCCSC
T ss_pred CCCCCCC--cCC-----HHHhhhhhhccccceeeecCCCcccccCcccc--CCCcccEEECCCCceeecCHhHhcccccc
Confidence 6665421 000 01111122223333 78888888877766554 45589999999988765433 46788999
Q ss_pred CeEeecCCC
Q 038637 849 KHLKISGMD 857 (962)
Q Consensus 849 ~~L~L~~~~ 857 (962)
+.|++++|+
T Consensus 227 ~~L~l~~N~ 235 (276)
T 2z62_A 227 QKIWLHTNP 235 (276)
T ss_dssp CEEECCSSC
T ss_pred cEEEccCCc
Confidence 999998875
No 88
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.54 E-value=1.5e-13 Score=151.53 Aligned_cols=237 Identities=16% Similarity=0.133 Sum_probs=140.2
Q ss_pred cEEEeCCCcCcccccccccCCCcCCeEeccCCCCccccc-cccccccCcEEeeCCCccccccch-hcccCCCccEEec-C
Q 038637 618 RVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPE-SINSLYNLHTILLENCWELKKLCK-DMGNLTKLRHLRN-S 694 (962)
Q Consensus 618 r~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l-~ 694 (962)
++++.+++ .++.+|..+ ..+|++|+|++|.|+.+|+ .+.+|++|++|+|++|...+.+|. .+.++++|.++.. .
T Consensus 12 ~~v~C~~~-~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQES-KVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEEST-TCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCC-CCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 55666666 677777665 3577888888888887776 467778888888877744455554 3466666655333 3
Q ss_pred CCCCccccC-CCCCCCCCCCccCCeEeCCCCCCCcccccCcccCCCeEEEeccCCCCChhhhhhhcCcCCcCCCceEEec
Q 038637 695 DAGLLEEMP-KGFGKLTSLLTLGRFVVGKDSGSGLRELKSLTHLQGTLRISKLENVEDVGDACEAQLNNKVNLRTLLLDW 773 (962)
Q Consensus 695 ~~~~~~~~p-~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 773 (962)
+|. +..+| ..++.+++|++| .+.+
T Consensus 89 ~N~-l~~l~~~~f~~l~~L~~L------------------------------------------------------~l~~ 113 (350)
T 4ay9_X 89 ANN-LLYINPEAFQNLPNLQYL------------------------------------------------------LISN 113 (350)
T ss_dssp ETT-CCEECTTSBCCCTTCCEE------------------------------------------------------EEEE
T ss_pred CCc-ccccCchhhhhccccccc------------------------------------------------------cccc
Confidence 333 33332 233444444443 2222
Q ss_pred cCCCCCCccchhhHHhhhccCCCCCCcCeEEEeec-CCCCCCcCcCCCCCCCccEEEEeCCCCCCCCCCCCCCCCcCeEe
Q 038637 774 SARDVQNLDQCEFETRVLSMLKPHRDVQELTIRGY-GGTKFPIWLGDSSFSKLVNLKFGYCRMCTSLPSVGQLPLLKHLK 852 (962)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~lp~L~~L~ 852 (962)
+... ...........++..|.+.++ .+..+|..........|+.|+|++|.+....+.....++|+.|.
T Consensus 114 n~l~----------~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~ 183 (350)
T 4ay9_X 114 TGIK----------HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELN 183 (350)
T ss_dssp ECCS----------SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEE
T ss_pred cccc----------cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHh
Confidence 2200 000001122334556666553 44444432221123467888888887664333444566788888
Q ss_pred ecCCCCceEeCccccCCCCCCCCCCcceeeccccccccccccccCCccccCcCCccceEeEccCCCccccCC--CCCCCc
Q 038637 853 ISGMDRVKSVGLEFYGSSCSVPFPSLETLSFSDMREWEEWISCGAGQEVDEVFPKLRKLSLFNCYKLQGTLP--KRLLLL 930 (962)
Q Consensus 853 L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~lp--~~l~~L 930 (962)
+.+++.++.++...+.. +++|+.|+++++ .++.++ ...+.+|+.|.+.+|++++ .+| ..+++|
T Consensus 184 l~~~n~l~~i~~~~f~~-----l~~L~~LdLs~N-~l~~lp--------~~~~~~L~~L~~l~~~~l~-~lP~l~~l~~L 248 (350)
T 4ay9_X 184 LSDNNNLEELPNDVFHG-----ASGPVILDISRT-RIHSLP--------SYGLENLKKLRARSTYNLK-KLPTLEKLVAL 248 (350)
T ss_dssp CTTCTTCCCCCTTTTTT-----EECCSEEECTTS-CCCCCC--------SSSCTTCCEEECTTCTTCC-CCCCTTTCCSC
T ss_pred hccCCcccCCCHHHhcc-----CcccchhhcCCC-CcCccC--------hhhhccchHhhhccCCCcC-cCCCchhCcCh
Confidence 88777777776654332 778888888875 455543 2347788888888887787 677 467778
Q ss_pred ceEEEcc
Q 038637 931 EKLVIKS 937 (962)
Q Consensus 931 ~~L~i~~ 937 (962)
+.+++.+
T Consensus 249 ~~l~l~~ 255 (350)
T 4ay9_X 249 MEASLTY 255 (350)
T ss_dssp CEEECSC
T ss_pred hhCcCCC
Confidence 8777754
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.53 E-value=6.4e-14 Score=145.47 Aligned_cols=94 Identities=22% Similarity=0.330 Sum_probs=75.8
Q ss_pred CcccEEEeCCCcCcccccc-cccCCCcCCeEeccCCC-Cccccc-cccccccCcEEeeCCCccccccch-hcccCCCccE
Q 038637 615 PRLRVFSLCGYCNIFNLPN-EIGNLKHLRCLNLSRTR-IQILPE-SINSLYNLHTILLENCWELKKLCK-DMGNLTKLRH 690 (962)
Q Consensus 615 ~~Lr~L~L~~~~~~~~lp~-~i~~L~~Lr~L~Ls~~~-i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~ 690 (962)
+.|++|++++| .+..+|. .+.++++|++|+|++|. ++.+|. .+.++++|++|++++|..+..+|. .+..+++|++
T Consensus 31 ~~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CcccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 37999999999 6888875 78999999999999997 988876 688999999999998337777764 6789999999
Q ss_pred EecCCCCCccccCCCCCCCCC
Q 038637 691 LRNSDAGLLEEMPKGFGKLTS 711 (962)
Q Consensus 691 L~l~~~~~~~~~p~~i~~l~~ 711 (962)
|++++|. +..+|. ++.+++
T Consensus 110 L~l~~n~-l~~lp~-~~~l~~ 128 (239)
T 2xwt_C 110 LGIFNTG-LKMFPD-LTKVYS 128 (239)
T ss_dssp EEEEEEC-CCSCCC-CTTCCB
T ss_pred EeCCCCC-Cccccc-cccccc
Confidence 9999887 444553 443333
No 90
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.52 E-value=3.5e-16 Score=186.56 Aligned_cols=355 Identities=16% Similarity=0.115 Sum_probs=198.3
Q ss_pred CceeEEEEEeecccccccccccc-CCCCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCc-Cc--cccccc
Q 038637 559 QTLRHFSYICREYDGKKRLESVC-DVEHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYC-NI--FNLPNE 634 (962)
Q Consensus 559 ~~~r~ls~~~~~~~~~~~~~~~~-~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~-~~--~~lp~~ 634 (962)
...+++.+..........+..+. .+++|++|.+.++. +.. ........+...+++|++|++++|. .+ ..++..
T Consensus 130 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~--~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l 206 (594)
T 2p1m_B 130 KNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDD--VSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERL 206 (594)
T ss_dssp TTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EEC--CCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHH
T ss_pred CCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCC--cchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHH
Confidence 47888888765221222233333 78999999988753 110 0111122334578899999999984 11 112233
Q ss_pred ccCCCcCCeEeccCC-CCccccccccccccCcEEeeCCCc------cccccchhcccCCCccEE-ecCCCCCccccCCCC
Q 038637 635 IGNLKHLRCLNLSRT-RIQILPESINSLYNLHTILLENCW------ELKKLCKDMGNLTKLRHL-RNSDAGLLEEMPKGF 706 (962)
Q Consensus 635 i~~L~~Lr~L~Ls~~-~i~~lp~~i~~L~~L~~L~L~~~~------~l~~lp~~i~~L~~L~~L-~l~~~~~~~~~p~~i 706 (962)
+.++++|++|+|++| .+..+|..+.++++|+.|+++.+. .+..++..+.++++|+.| .+.... ...+|..+
T Consensus 207 ~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~-~~~l~~~~ 285 (594)
T 2p1m_B 207 VTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAV-PAYLPAVY 285 (594)
T ss_dssp HHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCC-GGGGGGGH
T ss_pred HHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccc-hhhHHHHH
Confidence 456799999999998 566888899999999999977663 234566677788888888 444332 33445444
Q ss_pred CCCCCCCccCCeEeCCCCCCCccc-ccCcccCCCeEEEeccCCCCChhhhhhhcCcCCcCCCceEEeccCC----CCCCc
Q 038637 707 GKLTSLLTLGRFVVGKDSGSGLRE-LKSLTHLQGTLRISKLENVEDVGDACEAQLNNKVNLRTLLLDWSAR----DVQNL 781 (962)
Q Consensus 707 ~~l~~L~~L~~~~~~~~~~~~~~~-l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~----~~~~~ 781 (962)
..+++|++|...... .....+.. +.++++|+ .|.+.+. + ....+......+++|+.|++..+.. ....+
T Consensus 286 ~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~-~L~l~~~--~--~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l 359 (594)
T 2p1m_B 286 SVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQ-RLWVLDY--I--EDAGLEVLASTCKDLRELRVFPSEPFVMEPNVAL 359 (594)
T ss_dssp HHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCC-EEEEEGG--G--HHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCC
T ss_pred HhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcC-EEeCcCc--c--CHHHHHHHHHhCCCCCEEEEecCcccccccCCCC
Confidence 456677766432211 11111111 34667777 7777654 1 1222333334567888888854210 00011
Q ss_pred cchhhHHhhhccC-CCCCCcCeEEEeecCCCCC-CcCcCCCCCCCccEEEEe-----CCCCCCCCCC-------CCCCCC
Q 038637 782 DQCEFETRVLSML-KPHRDVQELTIRGYGGTKF-PIWLGDSSFSKLVNLKFG-----YCRMCTSLPS-------VGQLPL 847 (962)
Q Consensus 782 ~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~L~-----~~~~~~~l~~-------l~~lp~ 847 (962)
. ...+..+ ..+++|+.|.+.++.+... +..+. ..+++|+.|+|+ +|......|. +..+++
T Consensus 360 ~-----~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~-~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~ 433 (594)
T 2p1m_B 360 T-----EQGLVSVSMGCPKLESVLYFCRQMTNAALITIA-RNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKD 433 (594)
T ss_dssp C-----HHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHH-HHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTT
T ss_pred C-----HHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHH-hhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCC
Confidence 1 1111111 2357788887766554321 11111 146788888888 3333333331 456778
Q ss_pred cCeEeecCCCCceEeCccccCCCCCCCCCCcceeeccccccccccccccCCccccCcCCccceEeEccCCCcccc----C
Q 038637 848 LKHLKISGMDRVKSVGLEFYGSSCSVPFPSLETLSFSDMREWEEWISCGAGQEVDEVFPKLRKLSLFNCYKLQGT----L 923 (962)
Q Consensus 848 L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~----l 923 (962)
|+.|+|++ .+...+....+ ..+++|+.|++++|. +..... ......+|+|+.|++++|+ +++. +
T Consensus 434 L~~L~L~~--~l~~~~~~~l~----~~~~~L~~L~L~~~~-i~~~~~----~~l~~~~~~L~~L~L~~n~-~~~~~~~~~ 501 (594)
T 2p1m_B 434 LRRLSLSG--LLTDKVFEYIG----TYAKKMEMLSVAFAG-DSDLGM----HHVLSGCDSLRKLEIRDCP-FGDKALLAN 501 (594)
T ss_dssp CCEEECCS--SCCHHHHHHHH----HHCTTCCEEEEESCC-SSHHHH----HHHHHHCTTCCEEEEESCS-CCHHHHHHT
T ss_pred ccEEeecC--cccHHHHHHHH----HhchhccEeeccCCC-CcHHHH----HHHHhcCCCcCEEECcCCC-CcHHHHHHH
Confidence 88888865 22221111111 016788888887764 322111 0111347888888888884 3321 2
Q ss_pred CCCCCCcceEEEccccCc
Q 038637 924 PKRLLLLEKLVIKSCHRL 941 (962)
Q Consensus 924 p~~l~~L~~L~i~~c~~l 941 (962)
...+++|+.|++++|+..
T Consensus 502 ~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 502 ASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp GGGGGGSSEEEEESSCCB
T ss_pred HHhCCCCCEEeeeCCCCC
Confidence 245678888888888753
No 91
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.50 E-value=1.8e-13 Score=144.83 Aligned_cols=175 Identities=23% Similarity=0.308 Sum_probs=119.3
Q ss_pred CcccEEEeCCCcCccccc-ccccCCCcCCeEeccCCCCccccccc-cccccCcEEeeCCCccccccch-hcccCCCccEE
Q 038637 615 PRLRVFSLCGYCNIFNLP-NEIGNLKHLRCLNLSRTRIQILPESI-NSLYNLHTILLENCWELKKLCK-DMGNLTKLRHL 691 (962)
Q Consensus 615 ~~Lr~L~L~~~~~~~~lp-~~i~~L~~Lr~L~Ls~~~i~~lp~~i-~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L 691 (962)
+.|+.|+|++| .+..+| ..+.++++|++|+|++|.++.+|..+ .++++|++|++++| .+..+|. .+..+++|++|
T Consensus 37 ~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L 114 (270)
T 2o6q_A 37 ADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN-KLQALPIGVFDQLVNLAEL 114 (270)
T ss_dssp TTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS-CCCCCCTTTTTTCSSCCEE
T ss_pred CCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC-cCCcCCHhHcccccCCCEE
Confidence 57999999999 677776 47999999999999999999988764 78999999999999 6666665 46889999999
Q ss_pred ecCCCCCccccC-CCCCCCCCCCccCCeEeCCCCCCCcccccCcccCCCeEEEeccCCCCChhhhhhhcCcCCcCCCceE
Q 038637 692 RNSDAGLLEEMP-KGFGKLTSLLTLGRFVVGKDSGSGLRELKSLTHLQGTLRISKLENVEDVGDACEAQLNNKVNLRTLL 770 (962)
Q Consensus 692 ~l~~~~~~~~~p-~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~ 770 (962)
++++|. +..+| ..++.+++|++| +
T Consensus 115 ~l~~n~-l~~~~~~~~~~l~~L~~L------------------------------------------------------~ 139 (270)
T 2o6q_A 115 RLDRNQ-LKSLPPRVFDSLTKLTYL------------------------------------------------------S 139 (270)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEE------------------------------------------------------E
T ss_pred ECCCCc-cCeeCHHHhCcCcCCCEE------------------------------------------------------E
Confidence 999887 33333 223444444433 2
Q ss_pred EeccCCCCCCccchhhHHhhhccCCCCCCcCeEEEeecCCCCCCcCcCCCCCCCccEEEEeCCCCCCCCC-CCCCCCCcC
Q 038637 771 LDWSARDVQNLDQCEFETRVLSMLKPHRDVQELTIRGYGGTKFPIWLGDSSFSKLVNLKFGYCRMCTSLP-SVGQLPLLK 849 (962)
Q Consensus 771 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L~ 849 (962)
++++... ......+..+++|+.|++++|.+..+|.... ..+++|+.|+|++|.+....+ .+..+++|+
T Consensus 140 Ls~n~l~----------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 208 (270)
T 2o6q_A 140 LGYNELQ----------SLPKGVFDKLTSLKELRLYNNQLKRVPEGAF-DKLTELKTLKLDNNQLKRVPEGAFDSLEKLK 208 (270)
T ss_dssp CCSSCCC----------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTT-TTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred CCCCcCC----------ccCHhHccCCcccceeEecCCcCcEeChhHh-ccCCCcCEEECCCCcCCcCCHHHhccccCCC
Confidence 2222100 0001124455667777777776666655322 256777777777776654333 466677777
Q ss_pred eEeecCCC
Q 038637 850 HLKISGMD 857 (962)
Q Consensus 850 ~L~L~~~~ 857 (962)
.|+|++|+
T Consensus 209 ~L~l~~N~ 216 (270)
T 2o6q_A 209 MLQLQENP 216 (270)
T ss_dssp EEECCSSC
T ss_pred EEEecCCC
Confidence 77777664
No 92
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.50 E-value=7.1e-14 Score=148.68 Aligned_cols=206 Identities=18% Similarity=0.164 Sum_probs=139.6
Q ss_pred CCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCccccc-ccccCCCcCCeEeccCCCCcccc-cccccc
Q 038637 584 EHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFNLP-NEIGNLKHLRCLNLSRTRIQILP-ESINSL 661 (962)
Q Consensus 584 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~lp-~~i~~L~~Lr~L~Ls~~~i~~lp-~~i~~L 661 (962)
++++.|.+.++. + ..++...|.++++|++|+|++| .+..++ ..+.++++|++|+|++|.++.+| ..+.++
T Consensus 28 ~~l~~L~ls~n~------l-~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (276)
T 2z62_A 28 FSTKNLDLSFNP------L-RHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 99 (276)
T ss_dssp TTCCEEECTTCC------C-CEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred CCccEEECCCCc------c-cccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccChhhhcCC
Confidence 467888776643 2 2344445778999999999998 677765 47889999999999999998776 568899
Q ss_pred ccCcEEeeCCCccccccch-hcccCCCccEEecCCCCCcc-ccCCCCCCCCCCCccCCeEeCCCCCCCcccccCcccCCC
Q 038637 662 YNLHTILLENCWELKKLCK-DMGNLTKLRHLRNSDAGLLE-EMPKGFGKLTSLLTLGRFVVGKDSGSGLRELKSLTHLQG 739 (962)
Q Consensus 662 ~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~-~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~ 739 (962)
++|++|++++| .+..++. .+..+++|++|++++|.... .+|..++.+++|++|...... ........+.
T Consensus 100 ~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~------- 170 (276)
T 2z62_A 100 SSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLR------- 170 (276)
T ss_dssp TTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGH-------
T ss_pred ccccEEECCCC-CccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC-CCcCCHHHhh-------
Confidence 99999999998 5555544 68899999999999987433 257778888888777321110 0000000111
Q ss_pred eEEEeccCCCCChhhhhhhcCcCCcCCC-ceEEeccCCCCCCccchhhHHhhhccCCCCCCcCeEEEeecCCCCCCcCcC
Q 038637 740 TLRISKLENVEDVGDACEAQLNNKVNLR-TLLLDWSARDVQNLDQCEFETRVLSMLKPHRDVQELTIRGYGGTKFPIWLG 818 (962)
Q Consensus 740 ~L~i~~l~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~ 818 (962)
.+..++.|. .|+++++... .++.......+|+.|++++|.+..+|.++.
T Consensus 171 -------------------~l~~L~~l~l~L~ls~n~l~-----------~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 220 (276)
T 2z62_A 171 -------------------VLHQMPLLNLSLDLSLNPMN-----------FIQPGAFKEIRLKELALDTNQLKSVPDGIF 220 (276)
T ss_dssp -------------------HHHTCTTCCEEEECCSSCCC-----------EECTTSSCSCCEEEEECCSSCCSCCCTTTT
T ss_pred -------------------hhhhccccceeeecCCCccc-----------ccCccccCCCcccEEECCCCceeecCHhHh
Confidence 111222222 4555555411 122223334589999999999998887654
Q ss_pred CCCCCCccEEEEeCCCCCC
Q 038637 819 DSSFSKLVNLKFGYCRMCT 837 (962)
Q Consensus 819 ~~~l~~L~~L~L~~~~~~~ 837 (962)
..+++|+.|+|++|.+..
T Consensus 221 -~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 221 -DRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp -TTCCSCCEEECCSSCBCC
T ss_pred -cccccccEEEccCCcccc
Confidence 379999999999998754
No 93
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.47 E-value=7.5e-13 Score=145.85 Aligned_cols=226 Identities=17% Similarity=0.120 Sum_probs=159.4
Q ss_pred cCcchhhhCCCCcccEEEeCCCcCcccccc-cccCCCcCCeEeccCCCCc-cccc-cccccccCcEEeeCCCcccccc-c
Q 038637 604 WSVPHMLLNHLPRLRVFSLCGYCNIFNLPN-EIGNLKHLRCLNLSRTRIQ-ILPE-SINSLYNLHTILLENCWELKKL-C 679 (962)
Q Consensus 604 ~~~~~~~l~~l~~Lr~L~L~~~~~~~~lp~-~i~~L~~Lr~L~Ls~~~i~-~lp~-~i~~L~~L~~L~L~~~~~l~~l-p 679 (962)
..+|..+ .++++.|+|++| .+..+|. .|.++++|++|+|++|.+. .+|. .+.+|++|+.+...++..+..+ |
T Consensus 22 t~iP~~l---~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~ 97 (350)
T 4ay9_X 22 TEIPSDL---PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP 97 (350)
T ss_dssp CSCCTTC---CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECT
T ss_pred CccCcCc---CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCc
Confidence 3566654 367999999999 7999985 6899999999999999985 5665 5788999887555443377777 4
Q ss_pred hhcccCCCccEEecCCCCCccccCCC-CCCCCCCCccCCeEeCCCCCCCcccccCcccCCCeEEEeccCCCCChhhhhhh
Q 038637 680 KDMGNLTKLRHLRNSDAGLLEEMPKG-FGKLTSLLTLGRFVVGKDSGSGLRELKSLTHLQGTLRISKLENVEDVGDACEA 758 (962)
Q Consensus 680 ~~i~~L~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~ 758 (962)
..+..+++|++|++++|. +..+|.. +....++. .+.+....
T Consensus 98 ~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~--------------------------~l~l~~~~----------- 139 (350)
T 4ay9_X 98 EAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKV--------------------------LLDIQDNI----------- 139 (350)
T ss_dssp TSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCE--------------------------EEEEESCT-----------
T ss_pred hhhhhccccccccccccc-cccCCchhhcccchhh--------------------------hhhhcccc-----------
Confidence 567999999999999987 4444432 11111111 11111110
Q ss_pred cCcCCcCCCceEEeccCCCCCCccchhhHHhhhccCCC-CCCcCeEEEeecCCCCCCcCcCCCCCCCccEEEEeCCCCCC
Q 038637 759 QLNNKVNLRTLLLDWSARDVQNLDQCEFETRVLSMLKP-HRDVQELTIRGYGGTKFPIWLGDSSFSKLVNLKFGYCRMCT 837 (962)
Q Consensus 759 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~ 837 (962)
++..+. ...+.. ...++.|++++|.+..+|.... ...+|+.|.+.+|...+
T Consensus 140 ------~i~~l~--------------------~~~f~~~~~~l~~L~L~~N~i~~i~~~~f--~~~~L~~l~l~~~n~l~ 191 (350)
T 4ay9_X 140 ------NIHTIE--------------------RNSFVGLSFESVILWLNKNGIQEIHNSAF--NGTQLDELNLSDNNNLE 191 (350)
T ss_dssp ------TCCEEC--------------------TTSSTTSBSSCEEEECCSSCCCEECTTSS--TTEEEEEEECTTCTTCC
T ss_pred ------cccccc--------------------ccchhhcchhhhhhccccccccCCChhhc--cccchhHHhhccCCccc
Confidence 011100 011222 2468889999999998887765 56789999999887787
Q ss_pred CCC--CCCCCCCcCeEeecCCCCceEeCccccCCCCCCCCCCcceeeccccccccccccccCCccccCcCCccceEeEcc
Q 038637 838 SLP--SVGQLPLLKHLKISGMDRVKSVGLEFYGSSCSVPFPSLETLSFSDMREWEEWISCGAGQEVDEVFPKLRKLSLFN 915 (962)
Q Consensus 838 ~l~--~l~~lp~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~ 915 (962)
.+| .++.+++|+.|+|++| .++.++.. .|.+|+.|.+.++.+++.++. ...+++|+.+++.+
T Consensus 192 ~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~--------~~~~L~~L~~l~~~~l~~lP~-------l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 192 ELPNDVFHGASGPVILDISRT-RIHSLPSY--------GLENLKKLRARSTYNLKKLPT-------LEKLVALMEASLTY 255 (350)
T ss_dssp CCCTTTTTTEECCSEEECTTS-CCCCCCSS--------SCTTCCEEECTTCTTCCCCCC-------TTTCCSCCEEECSC
T ss_pred CCCHHHhccCcccchhhcCCC-CcCccChh--------hhccchHhhhccCCCcCcCCC-------chhCcChhhCcCCC
Confidence 887 5899999999999987 46666542 278899998888888877643 45689999999865
No 94
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.47 E-value=2.7e-15 Score=168.18 Aligned_cols=87 Identities=25% Similarity=0.235 Sum_probs=55.7
Q ss_pred hCCCCcccEEEeCCCcCccc-----ccccccCCCcCCeEeccCCCCc----cccccc-------cccccCcEEeeCCCcc
Q 038637 611 LNHLPRLRVFSLCGYCNIFN-----LPNEIGNLKHLRCLNLSRTRIQ----ILPESI-------NSLYNLHTILLENCWE 674 (962)
Q Consensus 611 l~~l~~Lr~L~L~~~~~~~~-----lp~~i~~L~~Lr~L~Ls~~~i~----~lp~~i-------~~L~~L~~L~L~~~~~ 674 (962)
+..+++|++|+|++| .+.. ++..+..+++|++|+|++|.+. .+|..+ .++++|++|+|++|..
T Consensus 28 l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 106 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 106 (386)
T ss_dssp HHHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred HhcCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence 455677777777777 3433 3344667777777777776544 334333 5677777777777732
Q ss_pred cc----ccchhcccCCCccEEecCCCCC
Q 038637 675 LK----KLCKDMGNLTKLRHLRNSDAGL 698 (962)
Q Consensus 675 l~----~lp~~i~~L~~L~~L~l~~~~~ 698 (962)
.. .+|..+..+++|++|++++|..
T Consensus 107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l 134 (386)
T 2ca6_A 107 GPTAQEPLIDFLSKHTPLEHLYLHNNGL 134 (386)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred CHHHHHHHHHHHHhCCCCCEEECcCCCC
Confidence 22 2666677777777777777763
No 95
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.46 E-value=1.7e-13 Score=148.05 Aligned_cols=192 Identities=22% Similarity=0.296 Sum_probs=135.8
Q ss_pred ccCCCcCCeEeccCCCCccccccccccccCcEEeeCCCccccccchhcccCCCccEEecCCCCCccccCCCCCCCCCCCc
Q 038637 635 IGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLENCWELKKLCKDMGNLTKLRHLRNSDAGLLEEMPKGFGKLTSLLT 714 (962)
Q Consensus 635 i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~ 714 (962)
+..+.+|++|++++|.++.+| .+..+++|++|++++| .+..+|. +..+++|++|++++|. +..+| .++.+++|++
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~ 111 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKT 111 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCE
T ss_pred HHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCE
Confidence 557899999999999999987 6899999999999999 7778877 9999999999999997 55554 4666666666
Q ss_pred cCCeEeCCCCCCCcccccCcccCCCeEEEeccCCCCChhhhhhhcCcCCcCCCceEEeccCCCCCCccchhhHHhhhccC
Q 038637 715 LGRFVVGKDSGSGLRELKSLTHLQGTLRISKLENVEDVGDACEAQLNNKVNLRTLLLDWSARDVQNLDQCEFETRVLSML 794 (962)
Q Consensus 715 L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l 794 (962)
|... . .. +. . + ..+..+++|+.|+++++... . ...+
T Consensus 112 L~l~---~---n~---------l~------------~----~-~~l~~l~~L~~L~l~~n~l~-----~-------~~~l 147 (308)
T 1h6u_A 112 LDLT---S---TQ---------IT------------D----V-TPLAGLSNLQVLYLDLNQIT-----N-------ISPL 147 (308)
T ss_dssp EECT---T---SC---------CC------------C----C-GGGTTCTTCCEEECCSSCCC-----C-------CGGG
T ss_pred EECC---C---CC---------CC------------C----c-hhhcCCCCCCEEECCCCccC-----c-------Cccc
Confidence 5211 0 00 10 0 0 11456667888887776521 1 1115
Q ss_pred CCCCCcCeEEEeecCCCCCCcCcCCCCCCCccEEEEeCCCCCCCCCCCCCCCCcCeEeecCCCCceEeCccccCCCCCCC
Q 038637 795 KPHRDVQELTIRGYGGTKFPIWLGDSSFSKLVNLKFGYCRMCTSLPSVGQLPLLKHLKISGMDRVKSVGLEFYGSSCSVP 874 (962)
Q Consensus 795 ~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~~~~~~ 874 (962)
..+++|+.|++++|.+..+|. +. .+++|+.|++++|.+.+ ++.+..+++|++|++++|. +..++. +. .
T Consensus 148 ~~l~~L~~L~l~~n~l~~~~~-l~--~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~L~~N~-l~~~~~-l~------~ 215 (308)
T 1h6u_A 148 AGLTNLQYLSIGNAQVSDLTP-LA--NLSKLTTLKADDNKISD-ISPLASLPNLIEVHLKNNQ-ISDVSP-LA------N 215 (308)
T ss_dssp GGCTTCCEEECCSSCCCCCGG-GT--TCTTCCEEECCSSCCCC-CGGGGGCTTCCEEECTTSC-CCBCGG-GT------T
T ss_pred cCCCCccEEEccCCcCCCChh-hc--CCCCCCEEECCCCccCc-ChhhcCCCCCCEEEccCCc-cCcccc-cc------C
Confidence 567788888888888777766 43 67888888888887654 4457788888888888764 333331 22 2
Q ss_pred CCCcceeeccccc
Q 038637 875 FPSLETLSFSDMR 887 (962)
Q Consensus 875 f~~L~~L~l~~~~ 887 (962)
+++|+.|++++++
T Consensus 216 l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 216 TSNLFIVTLTNQT 228 (308)
T ss_dssp CTTCCEEEEEEEE
T ss_pred CCCCCEEEccCCe
Confidence 7888888888754
No 96
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.44 E-value=3.4e-13 Score=146.02 Aligned_cols=202 Identities=18% Similarity=0.140 Sum_probs=118.1
Q ss_pred CCcccEEEeCCCcCcccccccc--cCCCcCCeEeccCCCCccc-c----ccccccccCcEEeeCCCccccccchhcccCC
Q 038637 614 LPRLRVFSLCGYCNIFNLPNEI--GNLKHLRCLNLSRTRIQIL-P----ESINSLYNLHTILLENCWELKKLCKDMGNLT 686 (962)
Q Consensus 614 l~~Lr~L~L~~~~~~~~lp~~i--~~L~~Lr~L~Ls~~~i~~l-p----~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~ 686 (962)
+++|+.|++++|......|..+ +.+.+|++|+|++|.+... | ..+..+++|++|++++|......|..+..++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 4568999999884444567666 8889999999999888742 2 2445788999999998844334456778889
Q ss_pred CccEEecCCCCCccc--cC--CCCCCCCCCCccCCeEeCCCCCCCcccccCcccCCCeEEEeccCCCCChhhhhhhcCcC
Q 038637 687 KLRHLRNSDAGLLEE--MP--KGFGKLTSLLTLGRFVVGKDSGSGLRELKSLTHLQGTLRISKLENVEDVGDACEAQLNN 762 (962)
Q Consensus 687 ~L~~L~l~~~~~~~~--~p--~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~ 762 (962)
+|++|++++|..... ++ ..++.+++|++|..... . ++ .........+..
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N------~---------l~------------~l~~~~~~l~~~ 222 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT------G---------ME------------TPTGVCAALAAA 222 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS------C---------CC------------CHHHHHHHHHHH
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC------C---------CC------------chHHHHHHHHhc
Confidence 999999988874321 22 22356666666622100 0 00 011111111234
Q ss_pred CcCCCceEEeccCCCCCCccchhhHHhhhccCC---CCCCcCeEEEeecCCCCCCcCcCCCCCCCccEEEEeCCCCCCCC
Q 038637 763 KVNLRTLLLDWSARDVQNLDQCEFETRVLSMLK---PHRDVQELTIRGYGGTKFPIWLGDSSFSKLVNLKFGYCRMCTSL 839 (962)
Q Consensus 763 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~---~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l 839 (962)
+++|+.|+++++... ...+..+. .+++|+.|++++|.+..+|.++ +++|+.|+|++|.+.+ +
T Consensus 223 l~~L~~L~Ls~N~l~----------~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~----~~~L~~L~Ls~N~l~~-~ 287 (310)
T 4glp_A 223 GVQPHSLDLSHNSLR----------ATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL----PAKLRVLDLSSNRLNR-A 287 (310)
T ss_dssp TCCCSSEECTTSCCC----------CCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC----CSCCSCEECCSCCCCS-C
T ss_pred CCCCCEEECCCCCCC----------ccchhhHHhccCcCcCCEEECCCCCCCchhhhh----cCCCCEEECCCCcCCC-C
Confidence 456666666655421 01122222 2356666666666666666554 2566666666666543 3
Q ss_pred CCCCCCCCcCeEeecCCC
Q 038637 840 PSVGQLPLLKHLKISGMD 857 (962)
Q Consensus 840 ~~l~~lp~L~~L~L~~~~ 857 (962)
|.+..+|+|+.|++++|+
T Consensus 288 ~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 288 PQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp CCTTSCCCCSCEECSSTT
T ss_pred chhhhCCCccEEECcCCC
Confidence 445556666666666553
No 97
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.44 E-value=1.9e-13 Score=144.86 Aligned_cols=111 Identities=24% Similarity=0.420 Sum_probs=86.8
Q ss_pred ccCCCCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCcccccccccCCCcCCeEeccCCCCcccccc-c
Q 038637 580 VCDVEHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPES-I 658 (962)
Q Consensus 580 ~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~-i 658 (962)
...+++|+.|.+.++. + ..++ .+..+++|++|+|++| .+..++ .++.+++|++|+|++|.++.+|.. +
T Consensus 37 ~~~l~~L~~L~l~~~~------i-~~~~--~l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~ 105 (272)
T 3rfs_A 37 QNELNSIDQIIANNSD------I-KSVQ--GIQYLPNVRYLALGGN-KLHDIS-ALKELTNLTYLILTGNQLQSLPNGVF 105 (272)
T ss_dssp HHHHTTCCEEECTTSC------C-CCCT--TGGGCTTCCEEECTTS-CCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTT
T ss_pred cccccceeeeeeCCCC------c-cccc--ccccCCCCcEEECCCC-CCCCch-hhcCCCCCCEEECCCCccCccChhHh
Confidence 3466788888777653 1 1222 2577999999999999 677765 689999999999999999988765 6
Q ss_pred cccccCcEEeeCCCccccccchh-cccCCCccEEecCCCCCccccC
Q 038637 659 NSLYNLHTILLENCWELKKLCKD-MGNLTKLRHLRNSDAGLLEEMP 703 (962)
Q Consensus 659 ~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p 703 (962)
+++++|++|++++| .+..+|.. +..+++|++|++++|. +..+|
T Consensus 106 ~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~ 149 (272)
T 3rfs_A 106 DKLTNLKELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHNQ-LQSLP 149 (272)
T ss_dssp TTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCC
T ss_pred cCCcCCCEEECCCC-cCCccCHHHhccCCCCCEEECCCCc-cCccC
Confidence 89999999999999 56666554 7889999999999886 33333
No 98
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.43 E-value=1.6e-14 Score=158.77 Aligned_cols=104 Identities=16% Similarity=0.138 Sum_probs=85.0
Q ss_pred CCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCccc--ccccccCCCcCCeEeccCCCCc-cccccccc
Q 038637 584 EHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFN--LPNEIGNLKHLRCLNLSRTRIQ-ILPESINS 660 (962)
Q Consensus 584 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~--lp~~i~~L~~Lr~L~Ls~~~i~-~lp~~i~~ 660 (962)
++++.|.+.++. +....+. +.++++|++|+|++|. +.. +|..+..+++|++|+|++|.++ ..|..++.
T Consensus 70 ~~l~~L~l~~n~------l~~~~~~--~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~ 140 (336)
T 2ast_B 70 QGVIAFRCPRSF------MDQPLAE--HFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAK 140 (336)
T ss_dssp TTCSEEECTTCE------ECSCCCS--CCCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTT
T ss_pred ccceEEEcCCcc------ccccchh--hccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhc
Confidence 678888777642 2233232 4578999999999994 543 7788999999999999999988 67888999
Q ss_pred cccCcEEeeCCCcccc--ccchhcccCCCccEEecCCC
Q 038637 661 LYNLHTILLENCWELK--KLCKDMGNLTKLRHLRNSDA 696 (962)
Q Consensus 661 L~~L~~L~L~~~~~l~--~lp~~i~~L~~L~~L~l~~~ 696 (962)
+++|++|++++|..+. .+|..+..+++|++|++++|
T Consensus 141 ~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~ 178 (336)
T 2ast_B 141 NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC 178 (336)
T ss_dssp CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCC
Confidence 9999999999996555 47777899999999999998
No 99
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.40 E-value=1.5e-11 Score=137.63 Aligned_cols=292 Identities=12% Similarity=-0.013 Sum_probs=180.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchh----cc--cceEEEEEeCCCC-CHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQ----RH--FQFKAWACVSEDF-DVF 273 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~--F~~~~wv~v~~~~-~~~ 273 (962)
..++||+.+++++.+++..... ....+.+.|+|++|+||||||+.+++...-. .. ....+|+++.... +..
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 97 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK--NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQ 97 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT--TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHH
Confidence 6799999999999988864211 1245689999999999999999999842111 01 2346788877776 888
Q ss_pred HHHHHHHHHhccCCC-CCCccHHHHHHHHHhHhCCceEEEEEecCCCCCcc----c-hhhccCCCCCCCCCcEEEEEecC
Q 038637 274 RVTKSILKSIANDQS-NNDDDLNLLQEKLKKQLSGNKFLLVLDDVWNKNYN----Y-WSILSCPFGAGAPGSKIVVTTRN 347 (962)
Q Consensus 274 ~~~~~il~~l~~~~~-~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~----~-~~~l~~~l~~~~~gs~ilvTtR~ 347 (962)
.++..++.++.+... ........+...+.+.+..++.+|||||++.-... . ...+.... .+..||+||+.
T Consensus 98 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~----~~~~iI~~t~~ 173 (384)
T 2qby_B 98 AVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD----ANISVIMISND 173 (384)
T ss_dssp HHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS----SCEEEEEECSS
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC----cceEEEEEECC
Confidence 999999988843322 12334456677777888776669999999553211 1 22222222 67889999987
Q ss_pred hhhH----hhh--CCCCcccCCCCCHHHHHHHHHHhhcC-CCCCCCCcchHHHHHHHHHhcC---CChH-HHHHHHhh--
Q 038637 348 LDVA----NLT--RAYPKYGLKELSDDDCLRVVIQHSLG-ATGFSTNQSLKDVGEKIAKKCK---GLPL-AAKTLGGL-- 414 (962)
Q Consensus 348 ~~v~----~~~--~~~~~~~l~~L~~~~~~~Lf~~~a~~-~~~~~~~~~~~~~~~~I~~~c~---glPL-ai~~~~~~-- 414 (962)
.... ... .....+.+++++.++..++|..++.. ....... .+....|++.++ |.|. |+..+-.+
T Consensus 174 ~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~ 250 (384)
T 2qby_B 174 INVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRAAQ 250 (384)
T ss_dssp TTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred CchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 5321 111 11237899999999999999987531 1111122 345667777777 9887 44443332
Q ss_pred hcC---CCChhHHHHHHhhhhhcccccccCchhHHHhhccCCchhhHhHHhhhcCCCCCceeCHHHHHHHHHHcCCcccc
Q 038637 415 LRG---KDDLTDWEFVLNTDIWKLQEENYGIIPALRVSYHFLPSQLKQCFAYCSLFPKDYEFQEEEIILLWTAEGFLDQE 491 (962)
Q Consensus 415 L~~---~~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~~~fp~~~~i~~~~li~~W~aeg~i~~~ 491 (962)
++. .-+.+.+..+++... ...+..++..|+++.+..+..++....+-.+. +.....--..| +
T Consensus 251 ~a~~~~~i~~~~v~~~~~~~~----------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~-~~~~~~~~~~g-~--- 315 (384)
T 2qby_B 251 LASGGGIIRKEHVDKAIVDYE----------QERLIEAVKALPFHYKLALRSLIESEDVMSAH-KMYTDLCNKFK-Q--- 315 (384)
T ss_dssp HTTSSSCCCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHH-HHHHHHHHHTT-C---
T ss_pred HhcCCCccCHHHHHHHHHHHh----------cchHHHHHHcCCHHHHHHHHHHHHhcccChHH-HHHHHHHHHcC-C---
Confidence 221 234566666655421 13466677889988888887777611101111 11111111122 1
Q ss_pred cCCCcHHHHHHHHHHHHhhCCCccccc
Q 038637 492 YNGRKMEDLGREFVRELHSRSLFQQSS 518 (962)
Q Consensus 492 ~~~~~~e~~~~~~l~~L~~r~ll~~~~ 518 (962)
..........+++.|..+++++...
T Consensus 316 --~~~~~~~~~~~l~~L~~~gli~~~~ 340 (384)
T 2qby_B 316 --KPLSYRRFSDIISELDMFGIVKIRI 340 (384)
T ss_dssp --CCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred --CCCCHHHHHHHHHHHHhCCCEEEEe
Confidence 1123456788999999999998753
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.39 E-value=8.5e-13 Score=141.11 Aligned_cols=169 Identities=20% Similarity=0.295 Sum_probs=108.1
Q ss_pred CCCCcccEEEeCCCcCcccccccccCCCcCCeEeccCCCCccccccccccccCcEEeeCCCccccccchhcccCCCccEE
Q 038637 612 NHLPRLRVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLENCWELKKLCKDMGNLTKLRHL 691 (962)
Q Consensus 612 ~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 691 (962)
..+++|+.|++++| .+..+|. +..+++|++|+|++|.++.+|. +.++++|++|++++| .+..+|. +..+++|++|
T Consensus 43 ~~l~~L~~L~l~~~-~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L 117 (291)
T 1h6t_A 43 NELNSIDQIIANNS-DIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDEN-KVKDLSS-LKDLKKLKSL 117 (291)
T ss_dssp HHHHTCCEEECTTS-CCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCCGGG-GTTCTTCCEE
T ss_pred hhcCcccEEEccCC-CcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCC-cCCCChh-hccCCCCCEE
Confidence 34677888888888 6777754 7788888888888888888776 888888888888888 5666654 7888888888
Q ss_pred ecCCCCCccccCCCCCCCCCCCccCCeEeCCCCCCCcccccCcccCCCeEEEeccCCCCChhhhhhhcCcCCcCCCceEE
Q 038637 692 RNSDAGLLEEMPKGFGKLTSLLTLGRFVVGKDSGSGLRELKSLTHLQGTLRISKLENVEDVGDACEAQLNNKVNLRTLLL 771 (962)
Q Consensus 692 ~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l 771 (962)
++++|. +..++ .++.+++|+.| ++
T Consensus 118 ~L~~n~-i~~~~-~l~~l~~L~~L------------------------------------------------------~l 141 (291)
T 1h6t_A 118 SLEHNG-ISDIN-GLVHLPQLESL------------------------------------------------------YL 141 (291)
T ss_dssp ECTTSC-CCCCG-GGGGCTTCCEE------------------------------------------------------EC
T ss_pred ECCCCc-CCCCh-hhcCCCCCCEE------------------------------------------------------Ec
Confidence 888876 33332 23333333333 22
Q ss_pred eccCCCCCCccchhhHHhhhccCCCCCCcCeEEEeecCCCCCCcCcCCCCCCCccEEEEeCCCCCCCCCCCCCCCCcCeE
Q 038637 772 DWSARDVQNLDQCEFETRVLSMLKPHRDVQELTIRGYGGTKFPIWLGDSSFSKLVNLKFGYCRMCTSLPSVGQLPLLKHL 851 (962)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~lp~L~~L 851 (962)
+++... . ...+..+++|+.|++++|.+..++. +. .+++|+.|+|++|.+.+ ++.+..+++|+.|
T Consensus 142 ~~n~l~-----~-------~~~l~~l~~L~~L~L~~N~l~~~~~-l~--~l~~L~~L~L~~N~i~~-l~~l~~l~~L~~L 205 (291)
T 1h6t_A 142 GNNKIT-----D-------ITVLSRLTKLDTLSLEDNQISDIVP-LA--GLTKLQNLYLSKNHISD-LRALAGLKNLDVL 205 (291)
T ss_dssp CSSCCC-----C-------CGGGGGCTTCSEEECCSSCCCCCGG-GT--TCTTCCEEECCSSCCCB-CGGGTTCTTCSEE
T ss_pred cCCcCC-----c-------chhhccCCCCCEEEccCCccccchh-hc--CCCccCEEECCCCcCCC-ChhhccCCCCCEE
Confidence 222100 0 0123344566666666666665554 32 56677777777765543 4556667777777
Q ss_pred eecCCC
Q 038637 852 KISGMD 857 (962)
Q Consensus 852 ~L~~~~ 857 (962)
++++|+
T Consensus 206 ~l~~n~ 211 (291)
T 1h6t_A 206 ELFSQE 211 (291)
T ss_dssp EEEEEE
T ss_pred ECcCCc
Confidence 776653
No 101
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.39 E-value=2.4e-12 Score=134.53 Aligned_cols=171 Identities=19% Similarity=0.243 Sum_probs=104.9
Q ss_pred cccEEEeCCCcCcccccccccCCCcCCeEeccCCCCccccc-cccccccCcEEeeCCCcccccc-chhcccCCCccEEec
Q 038637 616 RLRVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPE-SINSLYNLHTILLENCWELKKL-CKDMGNLTKLRHLRN 693 (962)
Q Consensus 616 ~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l 693 (962)
..++++++++ .+..+|..+. .+|++|+|++|.+..++. .+.++++|++|++++| .+..+ |..+..+++|++|++
T Consensus 15 ~~~~l~~~~~-~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 15 GKKEVDCQGK-SLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGTEEECTTC-CCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred CCeEEecCCC-CccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEEC
Confidence 4667788777 6777776665 578888888888876654 5777888888888887 44444 344677888888888
Q ss_pred CCCCCccccCC-CCCCCCCCCccCCeEeCCCCCCCcccccCcccCCCeEEEeccCCCCChhhhhhhcCcCCcCCCceEEe
Q 038637 694 SDAGLLEEMPK-GFGKLTSLLTLGRFVVGKDSGSGLRELKSLTHLQGTLRISKLENVEDVGDACEAQLNNKVNLRTLLLD 772 (962)
Q Consensus 694 ~~~~~~~~~p~-~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 772 (962)
++|. +..+|. .++.+++|++| +++
T Consensus 91 ~~n~-l~~~~~~~~~~l~~L~~L------------------------------------------------------~L~ 115 (251)
T 3m19_A 91 ANNQ-LASLPLGVFDHLTQLDKL------------------------------------------------------YLG 115 (251)
T ss_dssp TTSC-CCCCCTTTTTTCTTCCEE------------------------------------------------------ECC
T ss_pred CCCc-ccccChhHhcccCCCCEE------------------------------------------------------EcC
Confidence 7776 333332 23333333333 222
Q ss_pred ccCCCCCCccchhhHHhhhccCCCCCCcCeEEEeecCCCCCCc-CcCCCCCCCccEEEEeCCCCCCCCC-CCCCCCCcCe
Q 038637 773 WSARDVQNLDQCEFETRVLSMLKPHRDVQELTIRGYGGTKFPI-WLGDSSFSKLVNLKFGYCRMCTSLP-SVGQLPLLKH 850 (962)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L~~ 850 (962)
++... ......+..+++|+.|++++|.+..+|. .+. .+++|+.|+|++|.+....+ .+..+++|+.
T Consensus 116 ~N~l~----------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 183 (251)
T 3m19_A 116 GNQLK----------SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFD--KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQT 183 (251)
T ss_dssp SSCCC----------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred CCcCC----------CcChhHhccCCcccEEECcCCcCCccCHHHcC--cCcCCCEEECCCCcCCccCHHHHhCCCCCCE
Confidence 11100 0001123445667777777776666655 232 56777777777777664443 5667777777
Q ss_pred EeecCCC
Q 038637 851 LKISGMD 857 (962)
Q Consensus 851 L~L~~~~ 857 (962)
|+|++|+
T Consensus 184 L~l~~N~ 190 (251)
T 3m19_A 184 ITLFGNQ 190 (251)
T ss_dssp EECCSCC
T ss_pred EEeeCCc
Confidence 7777664
No 102
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.39 E-value=1.8e-11 Score=137.16 Aligned_cols=295 Identities=15% Similarity=0.036 Sum_probs=180.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchh----cccceEEEEEeCCCCCHHHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQ----RHFQFKAWACVSEDFDVFRVT 276 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~F~~~~wv~v~~~~~~~~~~ 276 (962)
..++||+.+++++..++..... ....+.+.|+|++|+||||||+.+++..... +.-...+|+++....+...++
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~--~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 96 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALR--GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVA 96 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTS--SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHH
Confidence 6699999999999998854321 2345688999999999999999998742111 001245688888888999999
Q ss_pred HHHHHHhccCCCCCCccHHHHHHHHHhHh--CCceEEEEEecCCCCCcc--chhhc---cCCCCCC--CCCcEEEEEecC
Q 038637 277 KSILKSIANDQSNNDDDLNLLQEKLKKQL--SGNKFLLVLDDVWNKNYN--YWSIL---SCPFGAG--APGSKIVVTTRN 347 (962)
Q Consensus 277 ~~il~~l~~~~~~~~~~~~~~~~~l~~~l--~~kr~LlVlDdv~~~~~~--~~~~l---~~~l~~~--~~gs~ilvTtR~ 347 (962)
..++.+++............+...+.+.+ .+++.+||||+++.-... ..+.+ ....... ..+..+|.||+.
T Consensus 97 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~ 176 (387)
T 2v1u_A 97 SAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNS 176 (387)
T ss_dssp HHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSC
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECC
Confidence 99999997654333344556666666666 356899999999553211 11222 2211111 346678888876
Q ss_pred hhh--------HhhhCCCCcccCCCCCHHHHHHHHHHhhcC-CCCCCCCcchHHHHHHHHHhcC---CChH-HHHHHHhh
Q 038637 348 LDV--------ANLTRAYPKYGLKELSDDDCLRVVIQHSLG-ATGFSTNQSLKDVGEKIAKKCK---GLPL-AAKTLGGL 414 (962)
Q Consensus 348 ~~v--------~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~-~~~~~~~~~~~~~~~~I~~~c~---glPL-ai~~~~~~ 414 (962)
... ...+ ....+.+++++.++..+++...+-. ....... .+..+.|++.++ |.|- ++.++..+
T Consensus 177 ~~~~~~l~~~l~~r~-~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~~l~~a 252 (387)
T 2v1u_A 177 LGFVENLEPRVKSSL-GEVELVFPPYTAPQLRDILETRAEEAFNPGVLD---PDVVPLCAALAAREHGDARRALDLLRVA 252 (387)
T ss_dssp STTSSSSCHHHHTTT-TSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC---SSHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred CchHhhhCHHHHhcC-CCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 532 1111 1136899999999999999887421 0111112 245667777777 9994 33333322
Q ss_pred hc-----CC--CChhHHHHHHhhhhhcccccccCchhHHHhhccCCchhhHhHHhhhc-CCCCCceeCHHHHHHHHH---
Q 038637 415 LR-----GK--DDLTDWEFVLNTDIWKLQEENYGIIPALRVSYHFLPSQLKQCFAYCS-LFPKDYEFQEEEIILLWT--- 483 (962)
Q Consensus 415 L~-----~~--~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~~-~fp~~~~i~~~~li~~W~--- 483 (962)
.. +. -+.+.+..++.... ...+.-++..||++.+..+..++ ++...-.+....+.+...
T Consensus 253 ~~~a~~~~~~~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~ 322 (387)
T 2v1u_A 253 GEIAERRREERVRREHVYSARAEIE----------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELT 322 (387)
T ss_dssp HHHHHHTTCSCBCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCcCHHHHHHHHHHHh----------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 21 11 24455555544321 12355567889998888777666 443222454553333321
Q ss_pred -HcCCcccccCCCcHHHHHHHHHHHHhhCCCcccc
Q 038637 484 -AEGFLDQEYNGRKMEDLGREFVRELHSRSLFQQS 517 (962)
Q Consensus 484 -aeg~i~~~~~~~~~e~~~~~~l~~L~~r~ll~~~ 517 (962)
..| + .......+..++++|...|+++..
T Consensus 323 ~~~~-~-----~~~~~~~~~~~l~~L~~~gli~~~ 351 (387)
T 2v1u_A 323 STLG-L-----EHVTLRRVSGIISELDMLGIVKSR 351 (387)
T ss_dssp HHTT-C-----CCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HhcC-C-----CCCCHHHHHHHHHHHHhCCCeEEE
Confidence 122 1 122345678899999999999874
No 103
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.38 E-value=2.4e-11 Score=136.26 Aligned_cols=298 Identities=13% Similarity=0.034 Sum_probs=184.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhccc-ceEEEEEeCCCCCHHHHHHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHF-QFKAWACVSEDFDVFRVTKSI 279 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F-~~~~wv~v~~~~~~~~~~~~i 279 (962)
..++||+.+++++.+++........+..+.+.|+|++|+||||||+.+++. ..... ...+|++++...+...+...+
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~l 94 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWEL--YKDKTTARFVYINGFIYRNFTAIIGEI 94 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHH--HTTSCCCEEEEEETTTCCSHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHH--HhhhcCeeEEEEeCccCCCHHHHHHHH
Confidence 569999999999999986521101123348999999999999999999873 22221 245688888888888999999
Q ss_pred HHHhccCCCCCCccHHHHHHHHHhHhC--CceEEEEEecCCCCCccchhhccCCCCCC-C---CCcEEEEEecChhhHhh
Q 038637 280 LKSIANDQSNNDDDLNLLQEKLKKQLS--GNKFLLVLDDVWNKNYNYWSILSCPFGAG-A---PGSKIVVTTRNLDVANL 353 (962)
Q Consensus 280 l~~l~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~~~~~~~l~~~l~~~-~---~gs~ilvTtR~~~v~~~ 353 (962)
+..++............+.+.+.+.+. +++.+||||+++.-+......+...+... . .+..||+||+.......
T Consensus 95 ~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~ 174 (389)
T 1fnn_A 95 ARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNN 174 (389)
T ss_dssp HHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHT
T ss_pred HHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHH
Confidence 998876443233345556666665553 66899999999765444444454444321 1 46678888877543322
Q ss_pred hC-------CCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhc---------CCChHHHHHHHhh-h-
Q 038637 354 TR-------AYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKC---------KGLPLAAKTLGGL-L- 415 (962)
Q Consensus 354 ~~-------~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c---------~glPLai~~~~~~-L- 415 (962)
.. ....+.+.+++.++..+++...+..... ...-..+....|++.+ +|.|-.+..+... .
T Consensus 175 l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~ 252 (389)
T 1fnn_A 175 LDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLA--EGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAY 252 (389)
T ss_dssp SCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBC--TTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHH
T ss_pred hCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcC--CCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHH
Confidence 11 1236899999999999999887532100 1122356778899999 7887554443322 1
Q ss_pred -c---CC--CChhHHHHHHhhhhhcccccccCchhHHHhhccCCchhhHhHHhhhcCCC---CCceeCHHHHHHHHHH--
Q 038637 416 -R---GK--DDLTDWEFVLNTDIWKLQEENYGIIPALRVSYHFLPSQLKQCFAYCSLFP---KDYEFQEEEIILLWTA-- 484 (962)
Q Consensus 416 -~---~~--~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~~~fp---~~~~i~~~~li~~W~a-- 484 (962)
+ +. -+.+....+..... ...+.-.+..||.+.+.++..++.+. .+-.+....+...+..
T Consensus 253 ~a~~~~~~~i~~~~v~~~~~~~~----------~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~ 322 (389)
T 1fnn_A 253 AAQQNGRKHIAPEDVRKSSKEVL----------FGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVC 322 (389)
T ss_dssp HHHHTTCSSCCHHHHHHHHHHHS----------CCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHH
T ss_pred HHHHhCCCCcCHHHHHHHHHHHh----------hhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHH
Confidence 1 11 12222222222110 11233345678888888887777654 2224556666554433
Q ss_pred --cCCcccccCCCcHHHHHHHHHHHHhhCCCccccc
Q 038637 485 --EGFLDQEYNGRKMEDLGREFVRELHSRSLFQQSS 518 (962)
Q Consensus 485 --eg~i~~~~~~~~~e~~~~~~l~~L~~r~ll~~~~ 518 (962)
.|.. .-.......++++|..+++|....
T Consensus 323 ~~~~~~------~~~~~~~~~~l~~L~~~gli~~~~ 352 (389)
T 1fnn_A 323 EEYGER------PRVHSQLWSYLNDLREKGIVETRQ 352 (389)
T ss_dssp HHTTCC------CCCHHHHHHHHHHHHHTTSSEEEE
T ss_pred HHcCCC------CCCHHHHHHHHHHHHhCCCeEEee
Confidence 1211 112355778999999999998754
No 104
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.35 E-value=1.6e-13 Score=153.74 Aligned_cols=239 Identities=15% Similarity=0.117 Sum_probs=155.1
Q ss_pred cccCCCCeeEEccCCCccccccccccCcc---hhhhCCCCcccEEEeCCCcCcc----cccccc-------cCCCcCCeE
Q 038637 579 SVCDVEHLRTFLPVNLSDYRRNYLAWSVP---HMLLNHLPRLRVFSLCGYCNIF----NLPNEI-------GNLKHLRCL 644 (962)
Q Consensus 579 ~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~---~~~l~~l~~Lr~L~L~~~~~~~----~lp~~i-------~~L~~Lr~L 644 (962)
.+..+++|+.|.+.++. +....+ ...+.++++|++|+|++| .+. .+|..+ ..+++|++|
T Consensus 27 ~l~~~~~L~~L~L~~n~------i~~~~~~~l~~~l~~~~~L~~L~Ls~~-~~~~l~~~~~~~~~~l~~~l~~~~~L~~L 99 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSGNT------IGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTV 99 (386)
T ss_dssp HHHHCSCCCEEECTTSE------ECHHHHHHHHHTTTTCTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHTTCTTCCEE
T ss_pred HHhcCCCccEEECCCCC------CCHHHHHHHHHHHHhCCCccEEeCccc-ccCccccchhHHHHHHHHHHhhCCcccEE
Confidence 34567889999888753 222111 223678999999999997 333 334444 788999999
Q ss_pred eccCCCCcc-----ccccccccccCcEEeeCCCcccc----ccchhcccC---------CCccEEecCCCCCc-cccC--
Q 038637 645 NLSRTRIQI-----LPESINSLYNLHTILLENCWELK----KLCKDMGNL---------TKLRHLRNSDAGLL-EEMP-- 703 (962)
Q Consensus 645 ~Ls~~~i~~-----lp~~i~~L~~L~~L~L~~~~~l~----~lp~~i~~L---------~~L~~L~l~~~~~~-~~~p-- 703 (962)
+|++|.+.. +|..+.++++|++|+|++|.... .++..+..+ ++|++|++++|... ..+|
T Consensus 100 ~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 179 (386)
T 2ca6_A 100 RLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW 179 (386)
T ss_dssp ECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHH
T ss_pred ECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHH
Confidence 999999985 78889999999999999994322 234444555 89999999998743 2333
Q ss_pred -CCCCCCCCCCccCCeEeCCCCCCCcccccCcccCCCeEEEeccCCCCC-hhh-hhhhcCcCCcCCCceEEeccCCCCCC
Q 038637 704 -KGFGKLTSLLTLGRFVVGKDSGSGLRELKSLTHLQGTLRISKLENVED-VGD-ACEAQLNNKVNLRTLLLDWSARDVQN 780 (962)
Q Consensus 704 -~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~-~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~ 780 (962)
..+..+++|++|. +.+.. +.. ... ..+..+..+++|+.|+++++..
T Consensus 180 ~~~l~~~~~L~~L~--------------------------L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l---- 228 (386)
T 2ca6_A 180 AKTFQSHRLLHTVK--------------------------MVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNTF---- 228 (386)
T ss_dssp HHHHHHCTTCCEEE--------------------------CCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSCC----
T ss_pred HHHHHhCCCcCEEE--------------------------CcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCCCC----
Confidence 2344555555552 22110 000 000 1222566777888888877761
Q ss_pred ccchhhHHhhhccCCCCCCcCeEEEeecCCCC-----CCcCcCCCCCCCccEEEEeCCCCCC----CCC-CC-CCCCCcC
Q 038637 781 LDQCEFETRVLSMLKPHRDVQELTIRGYGGTK-----FPIWLGDSSFSKLVNLKFGYCRMCT----SLP-SV-GQLPLLK 849 (962)
Q Consensus 781 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----~p~~~~~~~l~~L~~L~L~~~~~~~----~l~-~l-~~lp~L~ 849 (962)
.. .....++..+..+++|+.|+|++|.+.. +|.++....+++|+.|+|++|.+.. .+| .+ .++|+|+
T Consensus 229 -~~-~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~ 306 (386)
T 2ca6_A 229 -TH-LGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL 306 (386)
T ss_dssp -HH-HHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCC
T ss_pred -Cc-HHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCce
Confidence 11 0113455666777888888888887654 2444421247888999998888775 355 34 5678899
Q ss_pred eEeecCCC
Q 038637 850 HLKISGMD 857 (962)
Q Consensus 850 ~L~L~~~~ 857 (962)
+|++++|+
T Consensus 307 ~L~l~~N~ 314 (386)
T 2ca6_A 307 FLELNGNR 314 (386)
T ss_dssp EEECTTSB
T ss_pred EEEccCCc
Confidence 99998875
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.33 E-value=2.5e-12 Score=149.15 Aligned_cols=177 Identities=14% Similarity=0.163 Sum_probs=108.3
Q ss_pred cccEEEeCCCcCcccccccccCCCcCCeEeccCCCCccccccccccccCcEEeeCCCccccccchhcccCCCccEEecCC
Q 038637 616 RLRVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLENCWELKKLCKDMGNLTKLRHLRNSD 695 (962)
Q Consensus 616 ~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~ 695 (962)
+|++|+|++| .+..+|..+. ++|++|+|++|.|+.+| ..+++|++|++++| .+..+|. +.. +|++|++++
T Consensus 60 ~L~~L~Ls~n-~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRL-NLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSS-CCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCC-CCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCC
Confidence 6788888877 5667776653 67888888888888777 45778888888887 5666776 544 788888887
Q ss_pred CCCccccCCCCCCCCCCCccCCeEeCCCCCCCcccccCcccCCCeEEEeccCCCCChhhhhhhcCcCCcCCCceEEeccC
Q 038637 696 AGLLEEMPKGFGKLTSLLTLGRFVVGKDSGSGLRELKSLTHLQGTLRISKLENVEDVGDACEAQLNNKVNLRTLLLDWSA 775 (962)
Q Consensus 696 ~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 775 (962)
|. +..+|. .+++|+.|.... .. +. . ++. .+++|+.|+++++.
T Consensus 130 N~-l~~lp~---~l~~L~~L~Ls~------N~---------l~---------~-------lp~---~l~~L~~L~Ls~N~ 171 (571)
T 3cvr_A 130 NQ-LTMLPE---LPALLEYINADN------NQ---------LT---------M-------LPE---LPTSLEVLSVRNNQ 171 (571)
T ss_dssp SC-CSCCCC---CCTTCCEEECCS------SC---------CS---------C-------CCC---CCTTCCEEECCSSC
T ss_pred Cc-CCCCCC---cCccccEEeCCC------Cc---------cC---------c-------CCC---cCCCcCEEECCCCC
Confidence 76 444665 345555442110 00 00 0 000 23456666666554
Q ss_pred CCCCCccchhhHHhhhccCCCCCCcCeEEEeecCCCCCCcCcCCCCCCCc-------cEEEEeCCCCCCCCC-CCCCCCC
Q 038637 776 RDVQNLDQCEFETRVLSMLKPHRDVQELTIRGYGGTKFPIWLGDSSFSKL-------VNLKFGYCRMCTSLP-SVGQLPL 847 (962)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L-------~~L~L~~~~~~~~l~-~l~~lp~ 847 (962)
+. .++. +. ++|+.|++++|.+..+|. +. . +| +.|+|++|.+.. +| .+..+++
T Consensus 172 L~-----------~lp~-l~--~~L~~L~Ls~N~L~~lp~-~~--~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~ 231 (571)
T 3cvr_A 172 LT-----------FLPE-LP--ESLEALDVSTNLLESLPA-VP--V--RNHHSEETEIFFRCRENRITH-IPENILSLDP 231 (571)
T ss_dssp CS-----------CCCC-CC--TTCCEEECCSSCCSSCCC-CC------------CCEEEECCSSCCCC-CCGGGGGSCT
T ss_pred CC-----------Ccch-hh--CCCCEEECcCCCCCchhh-HH--H--hhhcccccceEEecCCCccee-cCHHHhcCCC
Confidence 21 1222 22 677777777777777776 43 1 45 777777776653 55 4666777
Q ss_pred cCeEeecCCCCce
Q 038637 848 LKHLKISGMDRVK 860 (962)
Q Consensus 848 L~~L~L~~~~~~~ 860 (962)
|+.|+|++|+...
T Consensus 232 L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 232 TCTIILEDNPLSS 244 (571)
T ss_dssp TEEEECCSSSCCH
T ss_pred CCEEEeeCCcCCC
Confidence 7777777765433
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.32 E-value=1e-12 Score=154.30 Aligned_cols=97 Identities=23% Similarity=0.354 Sum_probs=69.9
Q ss_pred CCCCcccEEEeCCCcCcccccccccCCCcCCeEeccCCCCccccccccccccCcEEeeCCCccccccchhcccCCCccEE
Q 038637 612 NHLPRLRVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLENCWELKKLCKDMGNLTKLRHL 691 (962)
Q Consensus 612 ~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L 691 (962)
..+++|+.|++++| .+..+| .+..|++|++|+|++|.+..+|. +..|++|+.|+|++| .+..+| .+..+++|++|
T Consensus 40 ~~L~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 40 NELNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDEN-KIKDLS-SLKDLKKLKSL 114 (605)
T ss_dssp HHHTTCCCCBCTTC-CCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSS-CCCCCT-TSTTCTTCCEE
T ss_pred hcCCCCCEEECcCC-CCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCC-CCCCCh-hhccCCCCCEE
Confidence 45677888888887 577776 47788888888888888887776 778888888888888 666665 57788888888
Q ss_pred ecCCCCCccccCCCCCCCCCCCcc
Q 038637 692 RNSDAGLLEEMPKGFGKLTSLLTL 715 (962)
Q Consensus 692 ~l~~~~~~~~~p~~i~~l~~L~~L 715 (962)
++++|. +..+| .++.+++|+.|
T Consensus 115 ~Ls~N~-l~~l~-~l~~l~~L~~L 136 (605)
T 1m9s_A 115 SLEHNG-ISDIN-GLVHLPQLESL 136 (605)
T ss_dssp ECTTSC-CCCCG-GGGGCTTCSEE
T ss_pred EecCCC-CCCCc-cccCCCccCEE
Confidence 888876 33332 34444444444
No 107
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.31 E-value=1.8e-12 Score=152.06 Aligned_cols=104 Identities=22% Similarity=0.328 Sum_probs=70.5
Q ss_pred ccCCCCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCcccccccccCCCcCCeEeccCCCCcccccccc
Q 038637 580 VCDVEHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESIN 659 (962)
Q Consensus 580 ~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~ 659 (962)
+..+++|+.|.+.++. + ..++ .+..+++|+.|+|++| .+..+|. ++.|++|++|+|++|.+..+| .+.
T Consensus 39 ~~~L~~L~~L~l~~n~------i-~~l~--~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~ 106 (605)
T 1m9s_A 39 QNELNSIDQIIANNSD------I-KSVQ--GIQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLK 106 (605)
T ss_dssp HHHHTTCCCCBCTTCC------C-CCCT--TGGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCSSCCCCCT-TST
T ss_pred hhcCCCCCEEECcCCC------C-CCCh--HHccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcCCCCCCCh-hhc
Confidence 3455666666665542 1 1222 2566777888888777 5666665 777778888888887777765 577
Q ss_pred ccccCcEEeeCCCccccccchhcccCCCccEEecCCCC
Q 038637 660 SLYNLHTILLENCWELKKLCKDMGNLTKLRHLRNSDAG 697 (962)
Q Consensus 660 ~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~ 697 (962)
.|++|++|+|++| .+..+| .+..|++|+.|++++|.
T Consensus 107 ~l~~L~~L~Ls~N-~l~~l~-~l~~l~~L~~L~Ls~N~ 142 (605)
T 1m9s_A 107 DLKKLKSLSLEHN-GISDIN-GLVHLPQLESLYLGNNK 142 (605)
T ss_dssp TCTTCCEEECTTS-CCCCCG-GGGGCTTCSEEECCSSC
T ss_pred cCCCCCEEEecCC-CCCCCc-cccCCCccCEEECCCCc
Confidence 7778888888777 555554 47777788888877775
No 108
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.30 E-value=1.5e-11 Score=128.37 Aligned_cols=175 Identities=19% Similarity=0.197 Sum_probs=125.5
Q ss_pred CcCCeEeccCCCCccccccccccccCcEEeeCCCcccccc-chhcccCCCccEEecCCCCCccccCCCCCCCCCCCccCC
Q 038637 639 KHLRCLNLSRTRIQILPESINSLYNLHTILLENCWELKKL-CKDMGNLTKLRHLRNSDAGLLEEMPKGFGKLTSLLTLGR 717 (962)
Q Consensus 639 ~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~ 717 (962)
...++++++++.++.+|..+. .+|++|++++| .+..+ |..+..+++|++|++++|......|..+..+++|++|
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L-- 88 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQST-GLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTL-- 88 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE--
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCC-CcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEE--
Confidence 467899999999999998876 69999999999 45544 5568999999999999987333333334555555444
Q ss_pred eEeCCCCCCCcccccCcccCCCeEEEeccCCCCChhhhhhhcCcCCcCCCceEEeccCCCCCCccchhhHHhhhccCCCC
Q 038637 718 FVVGKDSGSGLRELKSLTHLQGTLRISKLENVEDVGDACEAQLNNKVNLRTLLLDWSARDVQNLDQCEFETRVLSMLKPH 797 (962)
Q Consensus 718 ~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~ 797 (962)
+++++... ...+..+..+
T Consensus 89 ----------------------------------------------------~L~~n~l~----------~~~~~~~~~l 106 (251)
T 3m19_A 89 ----------------------------------------------------GLANNQLA----------SLPLGVFDHL 106 (251)
T ss_dssp ----------------------------------------------------ECTTSCCC----------CCCTTTTTTC
T ss_pred ----------------------------------------------------ECCCCccc----------ccChhHhccc
Confidence 22211100 0112335567
Q ss_pred CCcCeEEEeecCCCCCCcCcCCCCCCCccEEEEeCCCCCCCCC-CCCCCCCcCeEeecCCCCceEeCccccCCCCCCCCC
Q 038637 798 RDVQELTIRGYGGTKFPIWLGDSSFSKLVNLKFGYCRMCTSLP-SVGQLPLLKHLKISGMDRVKSVGLEFYGSSCSVPFP 876 (962)
Q Consensus 798 ~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~ 876 (962)
++|+.|++++|.+..+|.... ..+++|+.|+|++|.+....+ .++.+++|++|+|++|. +..++..... .++
T Consensus 107 ~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~-----~l~ 179 (251)
T 3m19_A 107 TQLDKLYLGGNQLKSLPSGVF-DRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ-LQSVPHGAFD-----RLG 179 (251)
T ss_dssp TTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTT-----TCT
T ss_pred CCCCEEEcCCCcCCCcChhHh-ccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc-CCccCHHHHh-----CCC
Confidence 899999999999988877543 378999999999998776555 58899999999999875 4444433222 288
Q ss_pred Ccceeeccccc
Q 038637 877 SLETLSFSDMR 887 (962)
Q Consensus 877 ~L~~L~l~~~~ 887 (962)
+|+.|++++++
T Consensus 180 ~L~~L~l~~N~ 190 (251)
T 3m19_A 180 KLQTITLFGNQ 190 (251)
T ss_dssp TCCEEECCSCC
T ss_pred CCCEEEeeCCc
Confidence 99999998865
No 109
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.30 E-value=2.1e-11 Score=136.59 Aligned_cols=296 Identities=15% Similarity=0.099 Sum_probs=174.9
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhccc---ceEEEEEeCCCCCHHHHH
Q 038637 200 EAEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHF---QFKAWACVSEDFDVFRVT 276 (962)
Q Consensus 200 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F---~~~~wv~v~~~~~~~~~~ 276 (962)
+..++||+.+++.+.+++..... ....+.+.|+|++|+||||||+.+++. ....+ ...+|+++....+...++
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~--~~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~ 94 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYR--EEKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYRVL 94 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGG--TCCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--CCCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHHHH
Confidence 36799999999999998864311 124568899999999999999999883 33332 245688877777788888
Q ss_pred HHHHHHhccCCCCCCccHHHHHHHHHhHhC--CceEEEEEecCCCCC----ccchhhccCCCCC-CCCCcEEEEEecChh
Q 038637 277 KSILKSIANDQSNNDDDLNLLQEKLKKQLS--GNKFLLVLDDVWNKN----YNYWSILSCPFGA-GAPGSKIVVTTRNLD 349 (962)
Q Consensus 277 ~~il~~l~~~~~~~~~~~~~~~~~l~~~l~--~kr~LlVlDdv~~~~----~~~~~~l~~~l~~-~~~gs~ilvTtR~~~ 349 (962)
..++.+++........+.....+.+.+.+. +++.+||+|+++.-. ...+..+...+.. ...+..+|+||+...
T Consensus 95 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~ 174 (386)
T 2qby_A 95 ADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVK 174 (386)
T ss_dssp HHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGG
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCC
Confidence 888888765433223344555555655554 458999999995421 1222223222211 234566788887654
Q ss_pred hHhhhC-------CCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcC---CChHHHH-HHHhhhc--
Q 038637 350 VANLTR-------AYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCK---GLPLAAK-TLGGLLR-- 416 (962)
Q Consensus 350 v~~~~~-------~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~---glPLai~-~~~~~L~-- 416 (962)
...... ....+.+++++.++..+++...+.... .......+....|++.++ |.|..+. ++.....
T Consensus 175 ~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a 252 (386)
T 2qby_A 175 FVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAF--KPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIA 252 (386)
T ss_dssp GGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHB--CSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred hHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhc--cCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 322211 114689999999999999987642110 011223456677777777 9998443 3332211
Q ss_pred ---C--CCChhHHHHHHhhhhhcccccccCchhHHHhhccCCchhhHhHHhhhcCCCC-C-ceeCHHHHHHHH--HH--c
Q 038637 417 ---G--KDDLTDWEFVLNTDIWKLQEENYGIIPALRVSYHFLPSQLKQCFAYCSLFPK-D-YEFQEEEIILLW--TA--E 485 (962)
Q Consensus 417 ---~--~~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~~~fp~-~-~~i~~~~li~~W--~a--e 485 (962)
. .-+.+.+..+..... ...+.-++..+|.+.+..+..++..-+ + -.+....+.+.. ++ .
T Consensus 253 ~~~~~~~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~ 322 (386)
T 2qby_A 253 ERMKDTKVKEEYVYMAKEEIE----------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKL 322 (386)
T ss_dssp HHTTCSSCCHHHHHHHHHHHH----------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHH
T ss_pred HhcCCCccCHHHHHHHHHHHh----------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhc
Confidence 1 123444444444321 134556677888888887776663211 1 123333332221 11 1
Q ss_pred CCcccccCCCcHHHHHHHHHHHHhhCCCcccc
Q 038637 486 GFLDQEYNGRKMEDLGREFVRELHSRSLFQQS 517 (962)
Q Consensus 486 g~i~~~~~~~~~e~~~~~~l~~L~~r~ll~~~ 517 (962)
| +. .........+++.|...++++..
T Consensus 323 g-~~-----~~~~~~~~~~l~~L~~~gli~~~ 348 (386)
T 2qby_A 323 G-VE-----AVTQRRVSDIINELDMVGILTAK 348 (386)
T ss_dssp T-CC-----CCCHHHHHHHHHHHHHHTSEEEE
T ss_pred C-CC-----CCCHHHHHHHHHHHHhCCCEEEE
Confidence 2 11 11234567899999999999764
No 110
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.29 E-value=2.3e-12 Score=139.37 Aligned_cols=205 Identities=14% Similarity=0.107 Sum_probs=125.7
Q ss_pred CCCCeeEEccCCCccccccccccCcchhhh-CCCCcccEEEeCCCcCccc-cc----ccccCCCcCCeEeccCCCCcccc
Q 038637 582 DVEHLRTFLPVNLSDYRRNYLAWSVPHMLL-NHLPRLRVFSLCGYCNIFN-LP----NEIGNLKHLRCLNLSRTRIQILP 655 (962)
Q Consensus 582 ~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l-~~l~~Lr~L~L~~~~~~~~-lp----~~i~~L~~Lr~L~Ls~~~i~~lp 655 (962)
.+++|+.|.+.++. +....|..++ ..+++|++|+|++| .+.. .| ..+..+++|++|+|++|.+..+|
T Consensus 89 ~~~~L~~L~l~~n~------l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~ 161 (310)
T 4glp_A 89 AYSRLKELTLEDLK------ITGTMPPLPLEATGLALSSLRLRNV-SWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFS 161 (310)
T ss_dssp HHSCCCEEEEESCC------CBSCCCCCSSSCCCBCCSSCEEESC-CCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCC
T ss_pred ccCceeEEEeeCCE------eccchhhhhhhccCCCCCEEEeecc-cccchhhhhHHHHhhhccCCCEEEeeCCCcchhh
Confidence 34557777766542 3334444433 67788888888888 4443 22 33456888888888888887655
Q ss_pred -ccccccccCcEEeeCCCccccc--cchh--cccCCCccEEecCCCCCccccCCC----CCCCCCCCccCCeEeCCCCCC
Q 038637 656 -ESINSLYNLHTILLENCWELKK--LCKD--MGNLTKLRHLRNSDAGLLEEMPKG----FGKLTSLLTLGRFVVGKDSGS 726 (962)
Q Consensus 656 -~~i~~L~~L~~L~L~~~~~l~~--lp~~--i~~L~~L~~L~l~~~~~~~~~p~~----i~~l~~L~~L~~~~~~~~~~~ 726 (962)
..++.+++|++|++++|..... ++.. +..+++|++|++++|. +..+|.. ++.+++|++|.....
T Consensus 162 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N------ 234 (310)
T 4glp_A 162 CEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHN------ 234 (310)
T ss_dssp TTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTS------
T ss_pred HHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCC------
Confidence 5677888888888888843321 3322 3678888888888876 4433332 345566665521100
Q ss_pred CcccccCcccCCCeEEEeccCCCCChhhhhhhcCcCCcCCCceEEeccCCCCCCccchhhHHhhhccCCCCCCcCeEEEe
Q 038637 727 GLRELKSLTHLQGTLRISKLENVEDVGDACEAQLNNKVNLRTLLLDWSARDVQNLDQCEFETRVLSMLKPHRDVQELTIR 806 (962)
Q Consensus 727 ~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~ 806 (962)
.+... .......+..+++|+.|+++++... .++..+. ++|+.|+++
T Consensus 235 ~l~~~---------------------~p~~~~~~~~~~~L~~L~Ls~N~l~-----------~lp~~~~--~~L~~L~Ls 280 (310)
T 4glp_A 235 SLRAT---------------------VNPSAPRCMWSSALNSLNLSFAGLE-----------QVPKGLP--AKLRVLDLS 280 (310)
T ss_dssp CCCCC---------------------CCSCCSSCCCCTTCCCEECCSSCCC-----------SCCSCCC--SCCSCEECC
T ss_pred CCCcc---------------------chhhHHhccCcCcCCEEECCCCCCC-----------chhhhhc--CCCCEEECC
Confidence 00000 0000011112357788888777621 2333332 799999999
Q ss_pred ecCCCCCCcCcCCCCCCCccEEEEeCCCCCC
Q 038637 807 GYGGTKFPIWLGDSSFSKLVNLKFGYCRMCT 837 (962)
Q Consensus 807 ~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~ 837 (962)
+|.+..+|.. ..+++|+.|+|++|.+.+
T Consensus 281 ~N~l~~~~~~---~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 281 SNRLNRAPQP---DELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp SCCCCSCCCT---TSCCCCSCEECSSTTTSC
T ss_pred CCcCCCCchh---hhCCCccEEECcCCCCCC
Confidence 9999888763 378999999999998764
No 111
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.29 E-value=3.9e-12 Score=127.43 Aligned_cols=59 Identities=15% Similarity=0.200 Sum_probs=34.7
Q ss_pred CCCCCcCeEEEeecC-CCCCCcCcCCCCCCCccEEEEeCCCCCCCCCCCCCCCCcCeEeecCCC
Q 038637 795 KPHRDVQELTIRGYG-GTKFPIWLGDSSFSKLVNLKFGYCRMCTSLPSVGQLPLLKHLKISGMD 857 (962)
Q Consensus 795 ~~~~~L~~L~l~~~~-~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~lp~L~~L~L~~~~ 857 (962)
..+++|+.|++++|. +..+|. +. .+++|+.|++++|.+.+ ++.+..+|+|++|++++|+
T Consensus 133 ~~l~~L~~L~L~~n~~i~~~~~-l~--~l~~L~~L~l~~n~i~~-~~~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 133 NTLPKVNSIDLSYNGAITDIMP-LK--TLPELKSLNIQFDGVHD-YRGIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp TTCSSCCEEECCSCTBCCCCGG-GG--GCSSCCEEECTTBCCCC-CTTGGGCSSCCEEEECBC-
T ss_pred hhCCCCCEEEccCCCCccccHh-hc--CCCCCCEEECCCCCCcC-hHHhccCCCCCEEEeeCcc
Confidence 344555556666554 455542 32 56677777777776543 4466667777777776653
No 112
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.27 E-value=1.5e-11 Score=131.33 Aligned_cols=185 Identities=16% Similarity=0.196 Sum_probs=131.0
Q ss_pred cEEEeCCCcCcccccccccCCCcCCeEeccCCCCccccccccccccCcEEeeCCCccccccchhcccCCCccEEecCCCC
Q 038637 618 RVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLENCWELKKLCKDMGNLTKLRHLRNSDAG 697 (962)
Q Consensus 618 r~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~ 697 (962)
..+.+..+ .+..+. .+..+.+|++|++++|.+..+|. +..+++|++|++++| .+..++. +..+++|++|++++|.
T Consensus 27 ~~~~l~~~-~~~~~~-~~~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n~ 101 (291)
T 1h6t_A 27 IKDNLKKK-SVTDAV-TQNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENK 101 (291)
T ss_dssp HHHHTTCS-CTTSEE-CHHHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC
T ss_pred HHHHhcCC-Cccccc-chhhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCCc
Confidence 33345444 344332 25678999999999999998864 889999999999999 6777776 8999999999999887
Q ss_pred CccccCCCCCCCCCCCccCCeEeCCCCCCCcccccCcccCCCeEEEeccCCCCChhhhhhhcCcCCcCCCceEEeccCCC
Q 038637 698 LLEEMPKGFGKLTSLLTLGRFVVGKDSGSGLRELKSLTHLQGTLRISKLENVEDVGDACEAQLNNKVNLRTLLLDWSARD 777 (962)
Q Consensus 698 ~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 777 (962)
+..+| .++.+++|++ |+++++...
T Consensus 102 -l~~~~-~l~~l~~L~~------------------------------------------------------L~L~~n~i~ 125 (291)
T 1h6t_A 102 -VKDLS-SLKDLKKLKS------------------------------------------------------LSLEHNGIS 125 (291)
T ss_dssp -CCCGG-GGTTCTTCCE------------------------------------------------------EECTTSCCC
T ss_pred -CCCCh-hhccCCCCCE------------------------------------------------------EECCCCcCC
Confidence 33333 2333333333 333322210
Q ss_pred CCCccchhhHHhhhccCCCCCCcCeEEEeecCCCCCCcCcCCCCCCCccEEEEeCCCCCCCCCCCCCCCCcCeEeecCCC
Q 038637 778 VQNLDQCEFETRVLSMLKPHRDVQELTIRGYGGTKFPIWLGDSSFSKLVNLKFGYCRMCTSLPSVGQLPLLKHLKISGMD 857 (962)
Q Consensus 778 ~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~lp~L~~L~L~~~~ 857 (962)
. +..+..+++|+.|++++|.+..++ .+. .+++|+.|++++|.+.+. +.+..+++|+.|++++|.
T Consensus 126 -----~-------~~~l~~l~~L~~L~l~~n~l~~~~-~l~--~l~~L~~L~L~~N~l~~~-~~l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 126 -----D-------INGLVHLPQLESLYLGNNKITDIT-VLS--RLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSKNH 189 (291)
T ss_dssp -----C-------CGGGGGCTTCCEEECCSSCCCCCG-GGG--GCTTCSEEECCSSCCCCC-GGGTTCTTCCEEECCSSC
T ss_pred -----C-------ChhhcCCCCCCEEEccCCcCCcch-hhc--cCCCCCEEEccCCccccc-hhhcCCCccCEEECCCCc
Confidence 0 122445688999999999888774 343 789999999999987654 448899999999999874
Q ss_pred CceEeCccccCCCCCCCCCCcceeeccccc
Q 038637 858 RVKSVGLEFYGSSCSVPFPSLETLSFSDMR 887 (962)
Q Consensus 858 ~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~ 887 (962)
+..++. +. .+++|+.|++++++
T Consensus 190 -i~~l~~-l~------~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 190 -ISDLRA-LA------GLKNLDVLELFSQE 211 (291)
T ss_dssp -CCBCGG-GT------TCTTCSEEEEEEEE
T ss_pred -CCCChh-hc------cCCCCCEEECcCCc
Confidence 444432 22 28899999998864
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.25 E-value=5.6e-12 Score=132.44 Aligned_cols=166 Identities=20% Similarity=0.248 Sum_probs=103.7
Q ss_pred CCcccEEEeCCCcCcccccccccCCCcCCeEeccCCCCccccccccccccCcEEeeCCCccccccchhcccCCCccEEec
Q 038637 614 LPRLRVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLENCWELKKLCKDMGNLTKLRHLRN 693 (962)
Q Consensus 614 l~~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l 693 (962)
+..+..++++++ .+..++ .+..+.+|++|++++|.++.+| .+..+++|++|++++| .+..+|. +..+++|++|++
T Consensus 18 l~~l~~l~l~~~-~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 18 LANAVKQNLGKQ-SVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHTCS-CTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHhcCC-Cccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEEC
Confidence 445666677776 566666 4677778888888888777777 6777888888888877 6666666 777788888888
Q ss_pred CCCCCccccCCCCCCCCCCCccCCeEeCCCCCCCcccccCcccCCCeEEEeccCCCCChhhhhhhcCcCCcCCCceEEec
Q 038637 694 SDAGLLEEMPKGFGKLTSLLTLGRFVVGKDSGSGLRELKSLTHLQGTLRISKLENVEDVGDACEAQLNNKVNLRTLLLDW 773 (962)
Q Consensus 694 ~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 773 (962)
++|. +..+|.... ++ |+.|++++
T Consensus 93 ~~N~-l~~l~~~~~--~~------------------------------------------------------L~~L~L~~ 115 (263)
T 1xeu_A 93 NRNR-LKNLNGIPS--AC------------------------------------------------------LSRLFLDN 115 (263)
T ss_dssp CSSC-CSCCTTCCC--SS------------------------------------------------------CCEEECCS
T ss_pred CCCc-cCCcCcccc--Cc------------------------------------------------------ccEEEccC
Confidence 7775 333332111 22 22222222
Q ss_pred cCCCCCCccchhhHHhhhccCCCCCCcCeEEEeecCCCCCCcCcCCCCCCCccEEEEeCCCCCCCCCCCCCCCCcCeEee
Q 038637 774 SARDVQNLDQCEFETRVLSMLKPHRDVQELTIRGYGGTKFPIWLGDSSFSKLVNLKFGYCRMCTSLPSVGQLPLLKHLKI 853 (962)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~lp~L~~L~L 853 (962)
+... . +..+..+++|+.|++++|.+..+|. +. .+++|+.|+|++|.+.+. +.+..+++|+.|++
T Consensus 116 N~l~-----~-------~~~l~~l~~L~~L~Ls~N~i~~~~~-l~--~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l 179 (263)
T 1xeu_A 116 NELR-----D-------TDSLIHLKNLEILSIRNNKLKSIVM-LG--FLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDL 179 (263)
T ss_dssp SCCS-----B-------SGGGTTCTTCCEEECTTSCCCBCGG-GG--GCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEE
T ss_pred CccC-----C-------ChhhcCcccccEEECCCCcCCCChH-Hc--cCCCCCEEECCCCcCcch-HHhccCCCCCEEeC
Confidence 2200 0 1124455666666666666666552 32 577777777777776543 66777777777777
Q ss_pred cCCC
Q 038637 854 SGMD 857 (962)
Q Consensus 854 ~~~~ 857 (962)
++|+
T Consensus 180 ~~N~ 183 (263)
T 1xeu_A 180 TGQK 183 (263)
T ss_dssp EEEE
T ss_pred CCCc
Confidence 7654
No 114
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.25 E-value=4.1e-13 Score=148.80 Aligned_cols=214 Identities=13% Similarity=0.085 Sum_probs=125.6
Q ss_pred hhhhCCCCcccEEEeCCCcCccccc-----ccccCCC-cCCeEeccCCCCccc-ccccccc-----ccCcEEeeCCCccc
Q 038637 608 HMLLNHLPRLRVFSLCGYCNIFNLP-----NEIGNLK-HLRCLNLSRTRIQIL-PESINSL-----YNLHTILLENCWEL 675 (962)
Q Consensus 608 ~~~l~~l~~Lr~L~L~~~~~~~~lp-----~~i~~L~-~Lr~L~Ls~~~i~~l-p~~i~~L-----~~L~~L~L~~~~~l 675 (962)
..++...++|++|+|++| .+...+ ..+.+++ +|++|+|++|.+... +..+..+ ++|++|++++| .+
T Consensus 15 ~~~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l 92 (362)
T 3goz_A 15 EEFTSIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGN-FL 92 (362)
T ss_dssp HHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSS-CG
T ss_pred HHHHhCCCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCC-cC
Confidence 344566677999999999 677765 5677888 899999999999854 5566665 99999999999 45
Q ss_pred ccc-chh----cccC-CCccEEecCCCCCccccCC-CC----CC-CCCCCccCCeEeCCCCCCCcccccCcccCCCeEEE
Q 038637 676 KKL-CKD----MGNL-TKLRHLRNSDAGLLEEMPK-GF----GK-LTSLLTLGRFVVGKDSGSGLRELKSLTHLQGTLRI 743 (962)
Q Consensus 676 ~~l-p~~----i~~L-~~L~~L~l~~~~~~~~~p~-~i----~~-l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i 743 (962)
... +.. +..+ ++|++|++++|. +...+. .+ .. .++|++| .+
T Consensus 93 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L--------------------------~L 145 (362)
T 3goz_A 93 SYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSL--------------------------NL 145 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEE--------------------------EC
T ss_pred ChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEE--------------------------Ec
Confidence 433 333 4444 899999999998 333322 22 22 1344444 22
Q ss_pred eccCCCCChhhhhhhcCcCCc-CCCceEEeccCCCCCCccchhhHHhhhccCCCC-CCcCeEEEeecCCCC-----CCcC
Q 038637 744 SKLENVEDVGDACEAQLNNKV-NLRTLLLDWSARDVQNLDQCEFETRVLSMLKPH-RDVQELTIRGYGGTK-----FPIW 816 (962)
Q Consensus 744 ~~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~-----~p~~ 816 (962)
.+..-.......+...+...+ +|+.|+++++... ... ...+...+... ++|+.|++++|.+.. ++..
T Consensus 146 s~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~-----~~~-~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~ 219 (362)
T 3goz_A 146 RGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA-----SKN-CAELAKFLASIPASVTSLDLSANLLGLKSYAELAYI 219 (362)
T ss_dssp TTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG-----GSC-HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred cCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc-----hhh-HHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHH
Confidence 211000001112223333333 6777777766521 100 11122223333 477777777776554 3333
Q ss_pred cCCCCCCCccEEEEeCCCCCCCCC-----CCCCCCCcCeEeecCCC
Q 038637 817 LGDSSFSKLVNLKFGYCRMCTSLP-----SVGQLPLLKHLKISGMD 857 (962)
Q Consensus 817 ~~~~~l~~L~~L~L~~~~~~~~l~-----~l~~lp~L~~L~L~~~~ 857 (962)
+. ...++|+.|+|++|.+.+.-+ .+..+++|+.|++++|.
T Consensus 220 l~-~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 220 FS-SIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp HH-HSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred Hh-cCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 32 013477777777777654221 34666777777777664
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.23 E-value=1.6e-11 Score=123.01 Aligned_cols=100 Identities=16% Similarity=0.198 Sum_probs=58.3
Q ss_pred CCCcccEEEeCCCcCcccccccccCCCcCCeEeccCCCCccccccccccccCcEEeeCCCccccccchhcccCCCccEEe
Q 038637 613 HLPRLRVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLENCWELKKLCKDMGNLTKLRHLR 692 (962)
Q Consensus 613 ~l~~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~ 692 (962)
.+++|+.|++++| .+..+| .+..+++|++|++++|.++.+| .+..+++|++|++++|......|..+..+++|++|+
T Consensus 42 ~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 42 QMNSLTYITLANI-NVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHTCCEEEEESS-CCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hcCCccEEeccCC-CccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 3456666666666 555666 4666666777777666655443 566666667776666633333555666666666666
Q ss_pred cCCCCCccccCCCCCCCCCCCcc
Q 038637 693 NSDAGLLEEMPKGFGKLTSLLTL 715 (962)
Q Consensus 693 l~~~~~~~~~p~~i~~l~~L~~L 715 (962)
+++|......|..++.+++|++|
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L 141 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSI 141 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEE
T ss_pred ecCCccCcHhHHHHhhCCCCCEE
Confidence 66665333334444444444433
No 116
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.22 E-value=1.4e-11 Score=142.74 Aligned_cols=183 Identities=19% Similarity=0.210 Sum_probs=123.6
Q ss_pred CeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCcccccccccCCCcCCeEeccCCCCccccccccccccC
Q 038637 585 HLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNL 664 (962)
Q Consensus 585 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L 664 (962)
+++.|.+.++. +. .+|..+ +++|++|+|++| .+..+| +.+++|++|+|++|.++.+|. +++ +|
T Consensus 60 ~L~~L~Ls~n~------L~-~lp~~l---~~~L~~L~Ls~N-~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L 122 (571)
T 3cvr_A 60 QFSELQLNRLN------LS-SLPDNL---PPQITVLEITQN-ALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SL 122 (571)
T ss_dssp TCSEEECCSSC------CS-CCCSCC---CTTCSEEECCSS-CCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TC
T ss_pred CccEEEeCCCC------CC-ccCHhH---cCCCCEEECcCC-CCcccc---cccCCCCEEEccCCCCCCcch-hhc--CC
Confidence 66666665542 22 244433 367889999888 677888 457888999999988888888 665 88
Q ss_pred cEEeeCCCccccccchhcccCCCccEEecCCCCCccccCCCCCCCCCCCccCCeEeCCCCCCCcccccCcccCCCeEEEe
Q 038637 665 HTILLENCWELKKLCKDMGNLTKLRHLRNSDAGLLEEMPKGFGKLTSLLTLGRFVVGKDSGSGLRELKSLTHLQGTLRIS 744 (962)
Q Consensus 665 ~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~ 744 (962)
++|++++| .+..+|. .+++|++|++++|. +..+|. .+++|++|..... . +.
T Consensus 123 ~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~N------~---------L~------ 173 (571)
T 3cvr_A 123 KHLDVDNN-QLTMLPE---LPALLEYINADNNQ-LTMLPE---LPTSLEVLSVRNN------Q---------LT------ 173 (571)
T ss_dssp CEEECCSS-CCSCCCC---CCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCSS------C---------CS------
T ss_pred CEEECCCC-cCCCCCC---cCccccEEeCCCCc-cCcCCC---cCCCcCEEECCCC------C---------CC------
Confidence 99999888 6666877 67889999998887 555665 3455555521100 0 10
Q ss_pred ccCCCCChhhhhhhcCcCCcCCCceEEeccCCCCCCccchhhHHhhhccCC-----CCCCcCeEEEeecCCCCCCcCcCC
Q 038637 745 KLENVEDVGDACEAQLNNKVNLRTLLLDWSARDVQNLDQCEFETRVLSMLK-----PHRDVQELTIRGYGGTKFPIWLGD 819 (962)
Q Consensus 745 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~p~~~~~ 819 (962)
. ++. +. ++|+.|+++++.+. .++. +. .++.|+.|++++|.+..+|.++.
T Consensus 174 ---~-------lp~-l~--~~L~~L~Ls~N~L~-----------~lp~-~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~- 227 (571)
T 3cvr_A 174 ---F-------LPE-LP--ESLEALDVSTNLLE-----------SLPA-VPVRNHHSEETEIFFRCRENRITHIPENIL- 227 (571)
T ss_dssp ---C-------CCC-CC--TTCCEEECCSSCCS-----------SCCC-CC--------CCEEEECCSSCCCCCCGGGG-
T ss_pred ---C-------cch-hh--CCCCEEECcCCCCC-----------chhh-HHHhhhcccccceEEecCCCcceecCHHHh-
Confidence 0 011 11 56777777776521 1122 22 22334999999999999999886
Q ss_pred CCCCCccEEEEeCCCCCCCCC
Q 038637 820 SSFSKLVNLKFGYCRMCTSLP 840 (962)
Q Consensus 820 ~~l~~L~~L~L~~~~~~~~l~ 840 (962)
.+++|+.|+|++|.+.+.+|
T Consensus 228 -~l~~L~~L~L~~N~l~~~~p 247 (571)
T 3cvr_A 228 -SLDPTCTIILEDNPLSSRIR 247 (571)
T ss_dssp -GSCTTEEEECCSSSCCHHHH
T ss_pred -cCCCCCEEEeeCCcCCCcCH
Confidence 69999999999999886555
No 117
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.20 E-value=1.3e-10 Score=119.20 Aligned_cols=77 Identities=23% Similarity=0.245 Sum_probs=52.3
Q ss_pred ccEEEeCCCcCcccccccccCCCcCCeEeccCCCCccc-cccccccccCcEEeeCCCccccccchh-cccCCCccEEecC
Q 038637 617 LRVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQIL-PESINSLYNLHTILLENCWELKKLCKD-MGNLTKLRHLRNS 694 (962)
Q Consensus 617 Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~ 694 (962)
.+.++.+++ .+..+|..+. .+|++|+|++|.++.+ |..+.++++|++|+|++| .+..+|.. +..+++|++|+++
T Consensus 21 ~~~v~c~~~-~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSK-RHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCC-CcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECC
Confidence 455667666 5777776554 6777777777777755 456677777777777777 55666543 4677777777777
Q ss_pred CCC
Q 038637 695 DAG 697 (962)
Q Consensus 695 ~~~ 697 (962)
+|.
T Consensus 97 ~N~ 99 (229)
T 3e6j_A 97 TNQ 99 (229)
T ss_dssp SSC
T ss_pred CCc
Confidence 665
No 118
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.20 E-value=1.7e-10 Score=117.61 Aligned_cols=81 Identities=19% Similarity=0.367 Sum_probs=59.0
Q ss_pred cEEEeCCCcCcccccccccCCCcCCeEeccCCCCccccc-cccccccCcEEeeCCCcccccc-chhcccCCCccEEecCC
Q 038637 618 RVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPE-SINSLYNLHTILLENCWELKKL-CKDMGNLTKLRHLRNSD 695 (962)
Q Consensus 618 r~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~ 695 (962)
+.++++++ .+..+|..+. .+|++|+|++|.|+.+|. .+..+++|++|+|++| .+..+ |..+..+++|++|++++
T Consensus 14 ~~v~c~~~-~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 14 NIVDCRGK-GLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TEEECTTS-CCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCS
T ss_pred CEEEcCCC-CcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCC
Confidence 56777777 6777776654 678888888888887765 6777888888888888 44444 66778888888888877
Q ss_pred CCCccccC
Q 038637 696 AGLLEEMP 703 (962)
Q Consensus 696 ~~~~~~~p 703 (962)
|. +..+|
T Consensus 90 N~-l~~l~ 96 (220)
T 2v9t_B 90 NK-ITELP 96 (220)
T ss_dssp SC-CCCCC
T ss_pred Cc-CCccC
Confidence 76 33444
No 119
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.19 E-value=5.7e-12 Score=139.52 Aligned_cols=233 Identities=11% Similarity=0.092 Sum_probs=147.8
Q ss_pred CCCCeeEEccCCCccccccccccCcch----hhhCCCC-cccEEEeCCCcCcccc-cccccCC-----CcCCeEeccCCC
Q 038637 582 DVEHLRTFLPVNLSDYRRNYLAWSVPH----MLLNHLP-RLRVFSLCGYCNIFNL-PNEIGNL-----KHLRCLNLSRTR 650 (962)
Q Consensus 582 ~~~~Lr~L~~~~~~~~~~~~~~~~~~~----~~l~~l~-~Lr~L~L~~~~~~~~l-p~~i~~L-----~~Lr~L~Ls~~~ 650 (962)
..++|+.|.+.++. +.. .+. ..+.+++ +|++|+|++| .+... +..+..+ .+|++|+|++|.
T Consensus 20 ~~~~L~~L~Ls~n~------l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 91 (362)
T 3goz_A 20 IPHGVTSLDLSLNN------LYS-ISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNF 91 (362)
T ss_dssp SCTTCCEEECTTSC------GGG-SCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred CCCCceEEEccCCC------CCh-HHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCc
Confidence 34459999888754 222 222 4567788 8999999999 56654 5566665 999999999999
Q ss_pred Ccccc-cc----cccc-ccCcEEeeCCCccccccch-h----ccc-CCCccEEecCCCCCcc----ccCCCCCCCC-CCC
Q 038637 651 IQILP-ES----INSL-YNLHTILLENCWELKKLCK-D----MGN-LTKLRHLRNSDAGLLE----EMPKGFGKLT-SLL 713 (962)
Q Consensus 651 i~~lp-~~----i~~L-~~L~~L~L~~~~~l~~lp~-~----i~~-L~~L~~L~l~~~~~~~----~~p~~i~~l~-~L~ 713 (962)
++..+ .. +..+ ++|++|++++| .+...+. . +.. .++|++|++++|.... .++..+..+. +|+
T Consensus 92 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 170 (362)
T 3goz_A 92 LSYKSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVN 170 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred CChHHHHHHHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCcccc
Confidence 98544 33 4444 89999999999 4554433 2 334 3699999999997432 2222333333 454
Q ss_pred ccCCeEeCCCCCCCcccccCcccCCCeEEEeccCCCCChhhhhhhcCcCC-cCCCceEEeccCCCCCCccchhhHHhhhc
Q 038637 714 TLGRFVVGKDSGSGLRELKSLTHLQGTLRISKLENVEDVGDACEAQLNNK-VNLRTLLLDWSARDVQNLDQCEFETRVLS 792 (962)
Q Consensus 714 ~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 792 (962)
+| .+....-.......+...+... .+|+.|+++++... ... ...++.
T Consensus 171 ~L--------------------------~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~-----~~~-~~~l~~ 218 (362)
T 3goz_A 171 SL--------------------------NLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG-----LKS-YAELAY 218 (362)
T ss_dssp EE--------------------------ECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG-----GSC-HHHHHH
T ss_pred Ee--------------------------eecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCC-----hhH-HHHHHH
Confidence 44 2221110001122233344455 48999999887621 111 122333
Q ss_pred cCCC-CCCcCeEEEeecCCCCCCc-----CcCCCCCCCccEEEEeCCCCCCC-------C-CCCCCCCCcCeEeecCCC
Q 038637 793 MLKP-HRDVQELTIRGYGGTKFPI-----WLGDSSFSKLVNLKFGYCRMCTS-------L-PSVGQLPLLKHLKISGMD 857 (962)
Q Consensus 793 ~l~~-~~~L~~L~l~~~~~~~~p~-----~~~~~~l~~L~~L~L~~~~~~~~-------l-~~l~~lp~L~~L~L~~~~ 857 (962)
.+.. +++|+.|++++|.+...+. .+ ..+++|+.|+|++|.+... + ..+..+++|+.|++++|+
T Consensus 219 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~--~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 219 IFSSIPNHVVSLNLCLNCLHGPSLENLKLLK--DSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp HHHHSCTTCCEEECCSSCCCCCCHHHHHHTT--TTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred HHhcCCCCceEEECcCCCCCcHHHHHHHHHH--hcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence 3333 4689999999998776543 22 3678999999999984321 1 146678888899998875
No 120
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.18 E-value=1.7e-10 Score=120.11 Aligned_cols=198 Identities=15% Similarity=0.101 Sum_probs=118.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSIL 280 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 280 (962)
.+++||+..++.+..++.... ..+.+.|+|++|+||||||+.+++... ..+... .......... ..+.
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-----~~~~~ll~G~~G~GKT~l~~~~~~~~~--~~~~~~----~~~~~~~~~~-~~~~ 90 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLN--CETGIT----ATPCGVCDNC-REIE 90 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-----CCSEEEEECSTTSCHHHHHHHHHHHHH--CTTCSC----SSCCSCSHHH-HHHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhc--CCCCCC----CCCCcccHHH-HHHh
Confidence 458999999999999996543 235889999999999999999987422 111100 0000000000 0000
Q ss_pred HHh-----ccCCCCCCccHHHHHHHHHhH----hCCceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEEEecChh-h
Q 038637 281 KSI-----ANDQSNNDDDLNLLQEKLKKQ----LSGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVVTTRNLD-V 350 (962)
Q Consensus 281 ~~l-----~~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v 350 (962)
... ..... .....+.+...+... ..+++.+||+||++.-+...+..+...+.....+..+|+||+... +
T Consensus 91 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 91 QGRFVDLIEIDAA-SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp TTCCSSEEEEETT-CGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred ccCCcceEEecCc-ccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 000 00000 111122222222221 235689999999976555556666555544456788888887643 2
Q ss_pred Hh-hhCCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHHHHHHhhh
Q 038637 351 AN-LTRAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAAKTLGGLL 415 (962)
Q Consensus 351 ~~-~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~~L 415 (962)
.. .......+.+++++.++..+++...+.... .....+....|++.|+|.|..+..+...+
T Consensus 170 ~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~----~~~~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 170 PVTILSRCLQFHLKALDVEQIRHQLEHILNEEH----IAHEPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp CHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTT----CCBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcC----CCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 11 112235689999999999999988764321 11224667889999999999988776543
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.16 E-value=1.4e-13 Score=160.68 Aligned_cols=214 Identities=19% Similarity=0.167 Sum_probs=112.6
Q ss_pred ccCCCcCCeEeccCCCCccccccccccccCcEEeeCCCccccccchhcccCCCccEEecCCCCCccccCCCCCCCCCCCc
Q 038637 635 IGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLENCWELKKLCKDMGNLTKLRHLRNSDAGLLEEMPKGFGKLTSLLT 714 (962)
Q Consensus 635 i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~ 714 (962)
+..+++|+.|+|++|.++.+|..|++|.+|+.|++++|..+..+|..+. .++ .....|..++.+++|+.
T Consensus 345 ~~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~------~~~-----~~~~~~~~l~~l~~L~~ 413 (567)
T 1dce_A 345 SATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMR------ALD-----PLLYEKETLQYFSTLKA 413 (567)
T ss_dssp CSTTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH------HHC-----TGGGHHHHHHHHHHHHH
T ss_pred cccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHH------hcc-----cccCCHHHHHHHHhccc
Confidence 3678899999999999999999999999999999977743333332211 111 12334555566666655
Q ss_pred cCCeEeCCCCCCCcccccCcccCCCeEEEeccCCCCChhhhhhhcCcCCcCCCceEEeccCCCCCCccchhhHHhhhccC
Q 038637 715 LGRFVVGKDSGSGLRELKSLTHLQGTLRISKLENVEDVGDACEAQLNNKVNLRTLLLDWSARDVQNLDQCEFETRVLSML 794 (962)
Q Consensus 715 L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l 794 (962)
|..... ..+.+|. .+.+..+. +. .++
T Consensus 414 L~~l~~--------n~~~~L~--------------------------------~l~l~~n~----------i~-~l~--- 439 (567)
T 1dce_A 414 VDPMRA--------AYLDDLR--------------------------------SKFLLENS----------VL-KME--- 439 (567)
T ss_dssp HCGGGH--------HHHHHHH--------------------------------HHHHHHHH----------HH-HHH---
T ss_pred Ccchhh--------cccchhh--------------------------------hhhhhccc----------cc-ccC---
Confidence 521100 0011111 11000000 00 000
Q ss_pred CCCCCcCeEEEeecCCCCCCcCcCCCCCCCccEEEEeCCCCCCCCC-CCCCCCCcCeEeecCCCCceEeCccccCCCCCC
Q 038637 795 KPHRDVQELTIRGYGGTKFPIWLGDSSFSKLVNLKFGYCRMCTSLP-SVGQLPLLKHLKISGMDRVKSVGLEFYGSSCSV 873 (962)
Q Consensus 795 ~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~lp~L~~L~L~~~~~~~~~~~~~~~~~~~~ 873 (962)
...|+.|++++|.+..+|. +. .+++|+.|+|++|.+. .+| .++.+++|+.|+|++|. +..++ .+..
T Consensus 440 --~~~L~~L~Ls~n~l~~lp~-~~--~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~l~~----- 506 (567)
T 1dce_A 440 --YADVRVLHLAHKDLTVLCH-LE--QLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNA-LENVD-GVAN----- 506 (567)
T ss_dssp --HTTCSEEECTTSCCSSCCC-GG--GGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSC-CCCCG-GGTT-----
T ss_pred --ccCceEEEecCCCCCCCcC-cc--ccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCC-CCCCc-ccCC-----
Confidence 1235666666666666665 32 5666666666666655 344 55666666666666543 33343 2222
Q ss_pred CCCCcceeeccccccccccccccCCccccCcCCccceEeEccCCCccccCCC-------CCCCcceEE
Q 038637 874 PFPSLETLSFSDMREWEEWISCGAGQEVDEVFPKLRKLSLFNCYKLQGTLPK-------RLLLLEKLV 934 (962)
Q Consensus 874 ~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~lp~-------~l~~L~~L~ 934 (962)
+++|+.|+|++| .+..+.. +...+.+++|+.|++++| .+++ +|. .+++|+.|+
T Consensus 507 -l~~L~~L~Ls~N-~l~~~~~----p~~l~~l~~L~~L~L~~N-~l~~-~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 507 -LPRLQELLLCNN-RLQQSAA----IQPLVSCPRLVLLNLQGN-SLCQ-EEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp -CSSCCEEECCSS-CCCSSST----TGGGGGCTTCCEEECTTS-GGGG-SSSCTTHHHHHCTTCSEEE
T ss_pred -CCCCcEEECCCC-CCCCCCC----cHHHhcCCCCCEEEecCC-cCCC-CccHHHHHHHHCcccCccC
Confidence 566666666664 3333310 112345667777777765 4553 332 246666653
No 122
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.13 E-value=9e-11 Score=123.21 Aligned_cols=97 Identities=23% Similarity=0.237 Sum_probs=77.0
Q ss_pred hCCCCcccEEEeCCCcCcccccccccCCCcCCeEeccCCCCccccccccccccCcEEeeCCCccccccchhcccCCCccE
Q 038637 611 LNHLPRLRVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLENCWELKKLCKDMGNLTKLRH 690 (962)
Q Consensus 611 l~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~ 690 (962)
+..+++|++|++++| .+..+| .++.+++|++|+|++|.++.+|. +.++++|++|++++| .+..+|.... ++|++
T Consensus 37 ~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N-~l~~l~~~~~--~~L~~ 110 (263)
T 1xeu_A 37 QKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRN-RLKNLNGIPS--ACLSR 110 (263)
T ss_dssp HHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSS-CCSCCTTCCC--SSCCE
T ss_pred hhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCC-ccCCcCcccc--CcccE
Confidence 456788999999998 788887 68889999999999999998887 889999999999998 6777775333 89999
Q ss_pred EecCCCCCccccCCCCCCCCCCCcc
Q 038637 691 LRNSDAGLLEEMPKGFGKLTSLLTL 715 (962)
Q Consensus 691 L~l~~~~~~~~~p~~i~~l~~L~~L 715 (962)
|++++|. +..+| .++.+++|+.|
T Consensus 111 L~L~~N~-l~~~~-~l~~l~~L~~L 133 (263)
T 1xeu_A 111 LFLDNNE-LRDTD-SLIHLKNLEIL 133 (263)
T ss_dssp EECCSSC-CSBSG-GGTTCTTCCEE
T ss_pred EEccCCc-cCCCh-hhcCcccccEE
Confidence 9999887 44443 35555555555
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.11 E-value=8.5e-11 Score=111.72 Aligned_cols=123 Identities=19% Similarity=0.236 Sum_probs=96.0
Q ss_pred CCCeeEEccCCCccccccccc-cCcchhhhCCCCcccEEEeCCCcCcccccccccCCCcCCeEeccCCCCcc-ccccccc
Q 038637 583 VEHLRTFLPVNLSDYRRNYLA-WSVPHMLLNHLPRLRVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQI-LPESINS 660 (962)
Q Consensus 583 ~~~Lr~L~~~~~~~~~~~~~~-~~~~~~~l~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~~-lp~~i~~ 660 (962)
.++++.|.+.++. +. ..+|. .+..+++|++|++++| .+..+ ..++.+++|++|+|++|.++. +|..+..
T Consensus 16 ~~~l~~L~l~~n~------l~~~~~~~-~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~ 86 (149)
T 2je0_A 16 PSDVKELVLDNSR------SNEGKLEG-LTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEK 86 (149)
T ss_dssp GGGCSEEECTTCB------CBTTBCCS-CCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHH
T ss_pred CccCeEEEccCCc------CChhHHHH-HHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhh
Confidence 4667777776643 22 23443 4678899999999998 67777 678899999999999999987 7888888
Q ss_pred cccCcEEeeCCCccccccc--hhcccCCCccEEecCCCCCccccCC----CCCCCCCCCccC
Q 038637 661 LYNLHTILLENCWELKKLC--KDMGNLTKLRHLRNSDAGLLEEMPK----GFGKLTSLLTLG 716 (962)
Q Consensus 661 L~~L~~L~L~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~~~p~----~i~~l~~L~~L~ 716 (962)
+++|++|++++| .+..+| ..+..+++|++|++++|. +...|. .++.+++|+.|.
T Consensus 87 l~~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~ 146 (149)
T 2je0_A 87 CPNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLD 146 (149)
T ss_dssp CTTCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEET
T ss_pred CCCCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCccccc
Confidence 999999999999 566654 778899999999999987 566665 577788887774
No 124
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.11 E-value=8.8e-11 Score=129.78 Aligned_cols=76 Identities=24% Similarity=0.311 Sum_probs=40.0
Q ss_pred cEEEeCCCcCcccccccccCCCcCCeEeccCCCCcccccc-cc-ccccCcEEeeCCCccccccc-hhcccCCCccEEecC
Q 038637 618 RVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPES-IN-SLYNLHTILLENCWELKKLC-KDMGNLTKLRHLRNS 694 (962)
Q Consensus 618 r~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~-i~-~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~ 694 (962)
++++++++ .+..+|..+. ..|++|+|++|.|+.+|.. +. ++.+|++|+|++| .+..+| ..+..+++|++|+++
T Consensus 21 ~~l~c~~~-~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQ-QLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSS-CCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCC-CcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECC
Confidence 35555555 4555554443 2355566666655555443 22 5556666666555 344443 235555666666665
Q ss_pred CCC
Q 038637 695 DAG 697 (962)
Q Consensus 695 ~~~ 697 (962)
+|.
T Consensus 97 ~N~ 99 (361)
T 2xot_A 97 SNH 99 (361)
T ss_dssp SSC
T ss_pred CCc
Confidence 555
No 125
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.11 E-value=1.3e-10 Score=117.47 Aligned_cols=75 Identities=21% Similarity=0.293 Sum_probs=36.0
Q ss_pred EEEeCCCcCcccccccccCCCcCCeEeccCCCCcccccc-ccccccCcEEeeCCCccccccchh-cccCCCccEEecCCC
Q 038637 619 VFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPES-INSLYNLHTILLENCWELKKLCKD-MGNLTKLRHLRNSDA 696 (962)
Q Consensus 619 ~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~ 696 (962)
.++++++ .+..+|..+ ..+|++|+|++|.++.+|.. +.++++|++|++++| .+..+|.. +..+++|++|++++|
T Consensus 11 ~v~c~~~-~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 11 TVECYSQ-GRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp EEECCSS-CCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEecCC-CccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCC
Confidence 3444444 344444333 23555555555555544442 345555555555555 33344332 345555555555554
Q ss_pred C
Q 038637 697 G 697 (962)
Q Consensus 697 ~ 697 (962)
.
T Consensus 87 ~ 87 (208)
T 2o6s_A 87 Q 87 (208)
T ss_dssp C
T ss_pred c
Confidence 4
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.11 E-value=1.2e-10 Score=113.28 Aligned_cols=126 Identities=21% Similarity=0.248 Sum_probs=90.9
Q ss_pred CCCeeEEccCCCccccccccc-cCcchhhhCCCCcccEEEeCCCcCcccccccccCCCcCCeEeccCCCCcc-ccccccc
Q 038637 583 VEHLRTFLPVNLSDYRRNYLA-WSVPHMLLNHLPRLRVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQI-LPESINS 660 (962)
Q Consensus 583 ~~~Lr~L~~~~~~~~~~~~~~-~~~~~~~l~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~~-lp~~i~~ 660 (962)
.++|+.|.+.++. +. ..+|.. +..+++|++|+|++| .+..+ ..++.+++|++|+|++|.+.. +|..+.+
T Consensus 23 ~~~L~~L~l~~n~------l~~~~i~~~-~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 93 (168)
T 2ell_A 23 PAAVRELVLDNCK------SNDGKIEGL-TAEFVNLEFLSLINV-GLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEK 93 (168)
T ss_dssp TTSCSEEECCSCB------CBTTBCSSC-CGGGGGCCEEEEESS-CCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHH
T ss_pred cccCCEEECCCCC------CChhhHHHH-HHhCCCCCEEeCcCC-CCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhh
Confidence 3667777666642 22 234432 567788888888888 56666 667888888888888888886 6777777
Q ss_pred cccCcEEeeCCCccccccc--hhcccCCCccEEecCCCCCccccCC----CCCCCCCCCccCCeE
Q 038637 661 LYNLHTILLENCWELKKLC--KDMGNLTKLRHLRNSDAGLLEEMPK----GFGKLTSLLTLGRFV 719 (962)
Q Consensus 661 L~~L~~L~L~~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~~~p~----~i~~l~~L~~L~~~~ 719 (962)
+++|++|++++| .+..+| ..+..+++|++|++++|. +..+|. .+..+++|+.|....
T Consensus 94 l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~ 156 (168)
T 2ell_A 94 LPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYD 156 (168)
T ss_dssp CTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred CCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCC
Confidence 888888888888 666665 577888888888888887 555665 577777777775443
No 127
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.10 E-value=2.9e-10 Score=116.65 Aligned_cols=122 Identities=21% Similarity=0.382 Sum_probs=91.4
Q ss_pred CCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCccccc-ccccCCCcCCeEeccCCCCcccccc-cccc
Q 038637 584 EHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFNLP-NEIGNLKHLRCLNLSRTRIQILPES-INSL 661 (962)
Q Consensus 584 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~lp-~~i~~L~~Lr~L~Ls~~~i~~lp~~-i~~L 661 (962)
++|+.|.+.++. +. .++...|.++++|++|+|++| .+..+| ..+..+++|++|+|++|.++.+|.. +..+
T Consensus 40 ~~L~~L~Ls~n~------i~-~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l 111 (229)
T 3e6j_A 40 TNAQILYLHDNQ------IT-KLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRL 111 (229)
T ss_dssp TTCSEEECCSSC------CC-CCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCCEEEcCCCc------cC-ccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcc
Confidence 677888777643 22 233445778888888888888 677776 4467888888888888888877765 5788
Q ss_pred ccCcEEeeCCCccccccchhcccCCCccEEecCCCCCccccCC-CCCCCCCCCcc
Q 038637 662 YNLHTILLENCWELKKLCKDMGNLTKLRHLRNSDAGLLEEMPK-GFGKLTSLLTL 715 (962)
Q Consensus 662 ~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L 715 (962)
++|++|++++| .+..+|..+..+++|++|++++|. +..+|. .+..+++|++|
T Consensus 112 ~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L 164 (229)
T 3e6j_A 112 VHLKELFMCCN-KLTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHA 164 (229)
T ss_dssp TTCCEEECCSS-CCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred hhhCeEeccCC-cccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEE
Confidence 88888888888 677888888888888888888887 555553 46666776666
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.10 E-value=1.7e-10 Score=113.16 Aligned_cols=129 Identities=17% Similarity=0.174 Sum_probs=102.2
Q ss_pred ccccCCCCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCcccccccccCCCcCCeEeccCCCCcccccc
Q 038637 578 ESVCDVEHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPES 657 (962)
Q Consensus 578 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~ 657 (962)
..+.++.+|+.|.+.++. +. .++ .+....++|++|+|++| .+..+ ..++.+++|++|+|++|.++.+|+.
T Consensus 13 ~~~~~~~~L~~L~l~~n~------l~-~i~-~~~~~~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~ 82 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYK------IP-VIE-NLGATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNNRICRIGEG 82 (176)
T ss_dssp CEEECTTSCEEEECTTSC------CC-SCC-CGGGGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSSCCCEECSC
T ss_pred HhcCCcCCceEEEeeCCC------Cc-hhH-HhhhcCCCCCEEECCCC-CCCcc-cccccCCCCCEEECCCCcccccCcc
Confidence 345677888998887753 22 233 22333458999999999 67777 5789999999999999999999876
Q ss_pred c-cccccCcEEeeCCCccccccch--hcccCCCccEEecCCCCCccccCCC----CCCCCCCCccCCe
Q 038637 658 I-NSLYNLHTILLENCWELKKLCK--DMGNLTKLRHLRNSDAGLLEEMPKG----FGKLTSLLTLGRF 718 (962)
Q Consensus 658 i-~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~~p~~----i~~l~~L~~L~~~ 718 (962)
+ ..+++|++|++++| .+..+|. .+..+++|++|++++|. +..+|.. ++.+++|+.|...
T Consensus 83 ~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~ 148 (176)
T 1a9n_A 83 LDQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQ 148 (176)
T ss_dssp HHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTE
T ss_pred hhhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCC
Confidence 5 89999999999999 7788887 78899999999999998 5677764 7788888887543
No 129
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.09 E-value=2.8e-10 Score=115.93 Aligned_cols=122 Identities=25% Similarity=0.386 Sum_probs=91.6
Q ss_pred CCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCcccc-cccccCCCcCCeEeccCCCCcccccc-cccc
Q 038637 584 EHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFNL-PNEIGNLKHLRCLNLSRTRIQILPES-INSL 661 (962)
Q Consensus 584 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~l-p~~i~~L~~Lr~L~Ls~~~i~~lp~~-i~~L 661 (962)
++++.|.+.++. + ..++...|..+++|++|+|++| .+..+ |..|.++.+|++|+|++|.++.+|.. +..+
T Consensus 32 ~~l~~L~l~~n~------i-~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l 103 (220)
T 2v9t_B 32 ETITEIRLEQNT------I-KVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGL 103 (220)
T ss_dssp TTCCEEECCSSC------C-CEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTC
T ss_pred cCCCEEECCCCc------C-CCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCC
Confidence 567777776643 2 2345556778888999999988 56665 67888899999999999998888875 5788
Q ss_pred ccCcEEeeCCCcccccc-chhcccCCCccEEecCCCCCccccCC-CCCCCCCCCcc
Q 038637 662 YNLHTILLENCWELKKL-CKDMGNLTKLRHLRNSDAGLLEEMPK-GFGKLTSLLTL 715 (962)
Q Consensus 662 ~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L 715 (962)
++|++|+|++| .+..+ |..+..+++|++|++++|. +..+|. .+..+++|++|
T Consensus 104 ~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L 157 (220)
T 2v9t_B 104 FSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTM 157 (220)
T ss_dssp TTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEE
T ss_pred CCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEE
Confidence 99999999988 45544 5678888999999998887 444443 46777777666
No 130
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.07 E-value=3.4e-10 Score=115.25 Aligned_cols=123 Identities=19% Similarity=0.251 Sum_probs=86.5
Q ss_pred CeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCccccc-ccccCCCcCCeEeccCCCCcccccc-ccccc
Q 038637 585 HLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFNLP-NEIGNLKHLRCLNLSRTRIQILPES-INSLY 662 (962)
Q Consensus 585 ~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~lp-~~i~~L~~Lr~L~Ls~~~i~~lp~~-i~~L~ 662 (962)
.++.|.+.++. +....+...|.++++|++|+|++| .+..++ ..|.++.+|++|+|++|.++.+|.. +..++
T Consensus 33 ~~~~L~L~~N~------l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 105 (220)
T 2v70_A 33 YTAELRLNNNE------FTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLE 105 (220)
T ss_dssp TCSEEECCSSC------CCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCS
T ss_pred CCCEEEcCCCc------CCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCc
Confidence 45666665542 222223344677888888888888 566665 4688888888888888888877654 77888
Q ss_pred cCcEEeeCCCcccccc-chhcccCCCccEEecCCCCCccccCCCCCCCCCCCcc
Q 038637 663 NLHTILLENCWELKKL-CKDMGNLTKLRHLRNSDAGLLEEMPKGFGKLTSLLTL 715 (962)
Q Consensus 663 ~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 715 (962)
+|++|+|++| .+..+ |..+..+++|++|++++|......|..+..+++|++|
T Consensus 106 ~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 158 (220)
T 2v70_A 106 SLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTL 158 (220)
T ss_dssp SCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEE
T ss_pred CCCEEECCCC-cCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEE
Confidence 8888888888 44444 6677888888888888887444446667777777766
No 131
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.05 E-value=1.7e-09 Score=110.53 Aligned_cols=185 Identities=12% Similarity=0.071 Sum_probs=114.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccc-eEEEEEeCCCCCHHHHHHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQ-FKAWACVSEDFDVFRVTKSI 279 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~-~~~wv~v~~~~~~~~~~~~i 279 (962)
..++|++..++.+.+++.... .+.+.|+|++|+|||++|+.+++... ...+. ..+.+..+.......+...+
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~l~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKN------IPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERGIDVVRHKI 89 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC------CCCEEEECSTTSSHHHHHHHHHHHHH-GGGGGGGEEEEETTCTTCHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCCC------CCeEEEECCCCCCHHHHHHHHHHHHh-ccccccceEEeccccccChHHHHHHH
Confidence 458999999999999996542 23489999999999999999987321 11122 23334444333332222111
Q ss_pred HHHhccCCCCCCccHHHHHHHHHhHhCCceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEEEecChhh-Hh-hhCCC
Q 038637 280 LKSIANDQSNNDDDLNLLQEKLKKQLSGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVVTTRNLDV-AN-LTRAY 357 (962)
Q Consensus 280 l~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v-~~-~~~~~ 357 (962)
..+.... ....+++.+||+||++.-....++.+...+.....+.++|+||+.... .. .....
T Consensus 90 -~~~~~~~---------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~ 153 (226)
T 2chg_A 90 -KEFARTA---------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRC 153 (226)
T ss_dssp -HHHHTSC---------------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred -HHHhccc---------------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhC
Confidence 1111100 011357899999999765444455555444444467788888876431 11 11223
Q ss_pred CcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHHHHHH
Q 038637 358 PKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAAKTLG 412 (962)
Q Consensus 358 ~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~ 412 (962)
..+.+.+++.++..+++.+.+..... .-..+....|++.++|.|..+..+.
T Consensus 154 ~~i~~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 154 AVFRFKPVPKEAMKKRLLEICEKEGV----KITEDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTC----CBCHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ceeecCCCCHHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 36899999999999999887632111 1224667889999999998655443
No 132
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.03 E-value=3.2e-10 Score=136.69 Aligned_cols=117 Identities=26% Similarity=0.364 Sum_probs=73.6
Q ss_pred ccCCCCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCcccccccccCCCcCCeEeccCCCCcccccccc
Q 038637 580 VCDVEHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESIN 659 (962)
Q Consensus 580 ~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~ 659 (962)
+..++.|+.|.+.++. + ..++..++ ++++|++|+|++| .+..+|..|++|.+|++|+|++|.|+.+|..|+
T Consensus 220 ~~~l~~L~~L~Ls~n~------l-~~l~~~~~-~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~ 290 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQ------I-FNISANIF-KYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELG 290 (727)
T ss_dssp --CCCCCCEEECTTSC------C-SCCCGGGG-GCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGG
T ss_pred hccCCCCcEEECCCCC------C-CCCChhhc-CCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCCccChhhc
Confidence 4456666666665542 1 23444433 5667777777776 555667667777777777777777777777777
Q ss_pred ccccCcEEeeCCCccccccchhcccCCCccEEecCCCCCccccCCCC
Q 038637 660 SLYNLHTILLENCWELKKLCKDMGNLTKLRHLRNSDAGLLEEMPKGF 706 (962)
Q Consensus 660 ~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i 706 (962)
+|.+|++|+|++| .+..+|..+..|++|++|++++|.+...+|..+
T Consensus 291 ~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~ 336 (727)
T 4b8c_D 291 SCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKIL 336 (727)
T ss_dssp GGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHH
T ss_pred CCCCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCccCCCChHHH
Confidence 7777777777776 556666667777777777777766444444433
No 133
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.02 E-value=4.2e-10 Score=109.33 Aligned_cols=137 Identities=25% Similarity=0.296 Sum_probs=106.8
Q ss_pred cCCceeEEEEEeeccccccccccccCCCCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCccc-ccccc
Q 038637 557 FSQTLRHFSYICREYDGKKRLESVCDVEHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFN-LPNEI 635 (962)
Q Consensus 557 ~~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~-lp~~i 635 (962)
.+..++++.+..+......-...+..+++|+.|.+.++. +.. + ..+..+++|++|+|++| .+.. +|..+
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~------l~~-~--~~~~~l~~L~~L~Ls~N-~l~~~~~~~~ 91 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG------LIS-V--SNLPKLPKLKKLELSEN-RIFGGLDMLA 91 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC------CCC-C--SSCCCCSSCCEEEEESC-CCCSCCCHHH
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC------CCC-h--hhhccCCCCCEEECcCC-cCchHHHHHH
Confidence 446678888776654311111234678999999887753 222 2 34788999999999999 5666 77778
Q ss_pred cCCCcCCeEeccCCCCcccc--ccccccccCcEEeeCCCccccccch----hcccCCCccEEecCCCCCccccCCC
Q 038637 636 GNLKHLRCLNLSRTRIQILP--ESINSLYNLHTILLENCWELKKLCK----DMGNLTKLRHLRNSDAGLLEEMPKG 705 (962)
Q Consensus 636 ~~L~~Lr~L~Ls~~~i~~lp--~~i~~L~~L~~L~L~~~~~l~~lp~----~i~~L~~L~~L~l~~~~~~~~~p~~ 705 (962)
.++++|++|+|++|.++.+| ..+..+++|++|++++| .+..+|. .+..+++|++|++.+|. ...+|..
T Consensus 92 ~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~ 165 (168)
T 2ell_A 92 EKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPDS 165 (168)
T ss_dssp HHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCSS
T ss_pred hhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC-hhhcccc
Confidence 88999999999999999887 78999999999999999 6777776 78999999999999987 5666653
No 134
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.01 E-value=1.3e-09 Score=110.01 Aligned_cols=122 Identities=31% Similarity=0.458 Sum_probs=80.3
Q ss_pred CCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCcccccc-cccCCCcCCeEeccCCCCcccccc-cccc
Q 038637 584 EHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFNLPN-EIGNLKHLRCLNLSRTRIQILPES-INSL 661 (962)
Q Consensus 584 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~lp~-~i~~L~~Lr~L~Ls~~~i~~lp~~-i~~L 661 (962)
++++.|.+.++. + ..++...|..+++|++|++++| .+..+|. .+..+.+|++|+|++|.++.+|.. +.++
T Consensus 28 ~~l~~L~l~~n~------l-~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 99 (208)
T 2o6s_A 28 AQTTYLDLETNS------L-KSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKL 99 (208)
T ss_dssp TTCSEEECCSSC------C-CCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CCCcEEEcCCCc------c-CcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCc
Confidence 466777666542 2 2345555677778888888777 5666654 357777888888888877776654 5677
Q ss_pred ccCcEEeeCCCccccccchh-cccCCCccEEecCCCCCccccCCC-CCCCCCCCcc
Q 038637 662 YNLHTILLENCWELKKLCKD-MGNLTKLRHLRNSDAGLLEEMPKG-FGKLTSLLTL 715 (962)
Q Consensus 662 ~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~L 715 (962)
++|++|++++| .+..+|.. +..+++|++|++++|. +..+|.. +..+++|+.|
T Consensus 100 ~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L 153 (208)
T 2o6s_A 100 TQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYI 153 (208)
T ss_dssp TTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEE
T ss_pred cCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEE
Confidence 88888888777 55555544 5777788888887776 3444433 4555555555
No 135
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.00 E-value=1.1e-09 Score=111.46 Aligned_cols=132 Identities=14% Similarity=0.127 Sum_probs=104.7
Q ss_pred CCceeEEEEEeeccccccccccccCCCCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCccccc-cccc
Q 038637 558 SQTLRHFSYICREYDGKKRLESVCDVEHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFNLP-NEIG 636 (962)
Q Consensus 558 ~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~lp-~~i~ 636 (962)
+...+.+.+..+..........+..+++|+.|.+.++. + ..++...|.++++|++|+|++| .+..+| ..+.
T Consensus 31 ~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~------i-~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~ 102 (220)
T 2v70_A 31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK------I-TDIEEGAFEGASGVNEILLTSN-RLENVQHKMFK 102 (220)
T ss_dssp CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC------C-CEECTTTTTTCTTCCEEECCSS-CCCCCCGGGGT
T ss_pred CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc------C-CEECHHHhCCCCCCCEEECCCC-ccCccCHhHhc
Confidence 44567777776644332222336788999999988753 2 3345556889999999999999 677775 5689
Q ss_pred CCCcCCeEeccCCCCccc-cccccccccCcEEeeCCCcccccc-chhcccCCCccEEecCCCCC
Q 038637 637 NLKHLRCLNLSRTRIQIL-PESINSLYNLHTILLENCWELKKL-CKDMGNLTKLRHLRNSDAGL 698 (962)
Q Consensus 637 ~L~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~ 698 (962)
++++|++|+|++|.++.+ |..+..+++|++|+|++| .+..+ |..+..+++|++|++++|..
T Consensus 103 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 103 GLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp TCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred CCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcCC
Confidence 999999999999999977 678999999999999999 56555 78899999999999999974
No 136
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.97 E-value=1e-09 Score=127.94 Aligned_cols=117 Identities=20% Similarity=0.233 Sum_probs=88.9
Q ss_pred eeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCcccccccccCCCcCCeEeccCCCCccccccccccccCc
Q 038637 586 LRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLH 665 (962)
Q Consensus 586 Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~ 665 (962)
|+.|.+.++. + ..+|. +.++++|++|+|++| .+..+|..++++++|++|+|++|.++.+| .+++|++|+
T Consensus 443 L~~L~Ls~n~------l-~~lp~--~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~ 511 (567)
T 1dce_A 443 VRVLHLAHKD------L-TVLCH--LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQ 511 (567)
T ss_dssp CSEEECTTSC------C-SSCCC--GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCC
T ss_pred ceEEEecCCC------C-CCCcC--ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCc
Confidence 5666665542 2 23443 677888999999988 67788888999999999999999998888 788899999
Q ss_pred EEeeCCCcccccc--chhcccCCCccEEecCCCCCccccCCCCCC----CCCCCcc
Q 038637 666 TILLENCWELKKL--CKDMGNLTKLRHLRNSDAGLLEEMPKGFGK----LTSLLTL 715 (962)
Q Consensus 666 ~L~L~~~~~l~~l--p~~i~~L~~L~~L~l~~~~~~~~~p~~i~~----l~~L~~L 715 (962)
+|+|++| .+..+ |..+..+++|++|++++|. +...|+.+.. +++|+.|
T Consensus 512 ~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L 565 (567)
T 1dce_A 512 ELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSI 565 (567)
T ss_dssp EEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEE
T ss_pred EEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCcc
Confidence 9999988 66666 8888899999999999887 5555554432 4555544
No 137
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.97 E-value=2.6e-10 Score=108.29 Aligned_cols=100 Identities=16% Similarity=0.198 Sum_probs=85.9
Q ss_pred CCCcccEEEeCCCcCcc--cccccccCCCcCCeEeccCCCCccccccccccccCcEEeeCCCccccc-cchhcccCCCcc
Q 038637 613 HLPRLRVFSLCGYCNIF--NLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLENCWELKK-LCKDMGNLTKLR 689 (962)
Q Consensus 613 ~l~~Lr~L~L~~~~~~~--~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~-lp~~i~~L~~L~ 689 (962)
..++|+.|++++| .+. .+|..++.+++|++|++++|.++.+ ..++++++|++|++++| .+.. +|..+..+++|+
T Consensus 15 ~~~~l~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 15 TPSDVKELVLDNS-RSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDN-RVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp CGGGCSEEECTTC-BCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSS-CCCSCTHHHHHHCTTCC
T ss_pred CCccCeEEEccCC-cCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCC-cccchHHHHhhhCCCCC
Confidence 4578999999999 566 8899899999999999999999988 78999999999999999 5555 888888899999
Q ss_pred EEecCCCCCccccC--CCCCCCCCCCccC
Q 038637 690 HLRNSDAGLLEEMP--KGFGKLTSLLTLG 716 (962)
Q Consensus 690 ~L~l~~~~~~~~~p--~~i~~l~~L~~L~ 716 (962)
+|++++|. +..+| ..++.+++|++|.
T Consensus 92 ~L~ls~N~-i~~~~~~~~~~~l~~L~~L~ 119 (149)
T 2je0_A 92 HLNLSGNK-IKDLSTIEPLKKLENLKSLD 119 (149)
T ss_dssp EEECTTSC-CCSHHHHGGGGGCTTCCEEE
T ss_pred EEECCCCc-CCChHHHHHHhhCCCCCEEe
Confidence 99999998 55543 6677888877773
No 138
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.94 E-value=6e-10 Score=134.29 Aligned_cols=106 Identities=25% Similarity=0.332 Sum_probs=70.9
Q ss_pred chhhhCCCCcccEEEeCCCcCcccccccccCCCcCCeEeccCCCCccccccccccccCcEEeeCCCccccccchhcccCC
Q 038637 607 PHMLLNHLPRLRVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLENCWELKKLCKDMGNLT 686 (962)
Q Consensus 607 ~~~~l~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~ 686 (962)
+...+..++.|++|+|++| .+..+|..+.++.+|++|+|++|.|+.+|..|++|.+|++|+|++| .+..+|..+..|+
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n-~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~ 293 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNL-QIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGSCF 293 (727)
T ss_dssp ------CCCCCCEEECTTS-CCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTS-CCSSCCSSGGGGT
T ss_pred ChhhhccCCCCcEEECCCC-CCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCC-cCCccChhhcCCC
Confidence 3444566777777777777 5666776666777777777777777777777777777777777777 4556777777777
Q ss_pred CccEEecCCCCCccccCCCCCCCCCCCcc
Q 038637 687 KLRHLRNSDAGLLEEMPKGFGKLTSLLTL 715 (962)
Q Consensus 687 ~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 715 (962)
+|++|++++|. +..+|..|+.|++|++|
T Consensus 294 ~L~~L~L~~N~-l~~lp~~~~~l~~L~~L 321 (727)
T 4b8c_D 294 QLKYFYFFDNM-VTTLPWEFGNLCNLQFL 321 (727)
T ss_dssp TCSEEECCSSC-CCCCCSSTTSCTTCCCE
T ss_pred CCCEEECCCCC-CCccChhhhcCCCccEE
Confidence 77777777765 55667667777777666
No 139
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.91 E-value=3.3e-09 Score=105.41 Aligned_cols=98 Identities=23% Similarity=0.345 Sum_probs=64.4
Q ss_pred cccEEEeCCCcCcccccc--cccCCCcCCeEeccCCCCccc-cccccccccCcEEeeCCCccccccc-hhcccCCCccEE
Q 038637 616 RLRVFSLCGYCNIFNLPN--EIGNLKHLRCLNLSRTRIQIL-PESINSLYNLHTILLENCWELKKLC-KDMGNLTKLRHL 691 (962)
Q Consensus 616 ~Lr~L~L~~~~~~~~lp~--~i~~L~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L 691 (962)
.|++|+|++| .+..++. .++.+++|++|+|++|.++.+ |..+.++++|++|+|++| .+..+| ..+..+++|++|
T Consensus 30 ~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L 107 (192)
T 1w8a_A 30 HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFLGLHQLKTL 107 (192)
T ss_dssp TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CCCEECSSSSTTCTTCCEE
T ss_pred CCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC-cCCccCHHHhcCCCCCCEE
Confidence 6777777777 5666654 267777777777777777755 556777777777777777 444443 346677777777
Q ss_pred ecCCCCCccccCCCCCCCCCCCcc
Q 038637 692 RNSDAGLLEEMPKGFGKLTSLLTL 715 (962)
Q Consensus 692 ~l~~~~~~~~~p~~i~~l~~L~~L 715 (962)
++++|......|..++.+++|++|
T Consensus 108 ~L~~N~l~~~~~~~~~~l~~L~~L 131 (192)
T 1w8a_A 108 NLYDNQISCVMPGSFEHLNSLTSL 131 (192)
T ss_dssp ECCSSCCCEECTTSSTTCTTCCEE
T ss_pred ECCCCcCCeeCHHHhhcCCCCCEE
Confidence 777776444445566666666655
No 140
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.90 E-value=2.3e-09 Score=116.64 Aligned_cols=268 Identities=14% Similarity=0.084 Sum_probs=142.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSIL 280 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 280 (962)
..++|++..++.+..++..... .......|.|+|++|+|||++|+.+++. .... .+++.++......+
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~i~~~--~~~~---~~~~~~~~~~~~~~------ 79 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKA-RKEPLEHLLLFGPPGLGKTTLAHVIAHE--LGVN---LRVTSGPAIEKPGD------ 79 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHH-HCSCCCCCEEECCTTCCCHHHHHHHHHH--HTCC---EEEECTTTCCSHHH------
T ss_pred HHhhCHHHHHHHHHHHHHHHHc-cCCCCCcEEEECCCCCCHHHHHHHHHHH--hCCC---EEEEeccccCChHH------
Confidence 4699999999998888753110 0113356889999999999999999873 2221 23444333222211
Q ss_pred HHhccCCCCCCccHHHHHHHHHhHhCCceEEEEEecCCCCCccchhhccCCCCC------------------CCCCcEEE
Q 038637 281 KSIANDQSNNDDDLNLLQEKLKKQLSGNKFLLVLDDVWNKNYNYWSILSCPFGA------------------GAPGSKIV 342 (962)
Q Consensus 281 ~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~------------------~~~gs~il 342 (962)
+...+...+ .+..+|++|++..........+...+.. ..++.++|
T Consensus 80 ----------------l~~~l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i 142 (324)
T 1hqc_A 80 ----------------LAAILANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLI 142 (324)
T ss_dssp ----------------HHHHHTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEE
T ss_pred ----------------HHHHHHHhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEE
Confidence 111121111 2445778888855432222222211110 01245677
Q ss_pred EEecChh-hHhhh-C-CCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHHHHHHhhhcC--
Q 038637 343 VTTRNLD-VANLT-R-AYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAAKTLGGLLRG-- 417 (962)
Q Consensus 343 vTtR~~~-v~~~~-~-~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~~L~~-- 417 (962)
.||.... +.... . ....+.+.+++.++..+++...+.... . .-..+....|++.++|.|-.+..+...+..
T Consensus 143 ~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~-~---~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a 218 (324)
T 1hqc_A 143 GATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLG-V---RITEEAALEIGRRSRGTMRVAKRLFRRVRDFA 218 (324)
T ss_dssp EEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTT-C---CCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTS
T ss_pred EeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcC-C---CCCHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 7666432 11111 1 124688999999999999888764321 1 122467888999999999887766544321
Q ss_pred ----C--CChhHHHHHHhhhhhcccccccCchhHHHhhccCCchhhHhHHhhhc-CCCCC----------ceeCHHHHHH
Q 038637 418 ----K--DDLTDWEFVLNTDIWKLQEENYGIIPALRVSYHFLPSQLKQCFAYCS-LFPKD----------YEFQEEEIIL 480 (962)
Q Consensus 418 ----~--~~~~~w~~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~~-~fp~~----------~~i~~~~li~ 480 (962)
. -+.+....+.... ...+..++...+..+..+. .|..+ ..+++..+.+
T Consensus 219 ~~~~~~~i~~~~~~~~~~~~---------------~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~ 283 (324)
T 1hqc_A 219 QVAGEEVITRERALEALAAL---------------GLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEE 283 (324)
T ss_dssp TTTSCSCCCHHHHHHHHHHH---------------TCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHh---------------cccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHH
Confidence 1 1233333333221 1122334433333333222 12111 1133333322
Q ss_pred ----HHHHcCCcccccCCCcHHHHHHHHHH-HHhhCCCccc
Q 038637 481 ----LWTAEGFLDQEYNGRKMEDLGREFVR-ELHSRSLFQQ 516 (962)
Q Consensus 481 ----~W~aeg~i~~~~~~~~~e~~~~~~l~-~L~~r~ll~~ 516 (962)
+-+..|+|.....+....+.|.+||+ ++.+|+|||+
T Consensus 284 ~l~~~~i~~~li~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 284 VHEPYLIRQGLLKRTPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp HTHHHHHHTTSEEEETTEEEECHHHHHHTTCCCCC------
T ss_pred HHhHHHHHhcchhcCCccceecHHHHHHHhcCCCCCCCCCC
Confidence 34568998766667778889999998 9999999985
No 141
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.89 E-value=7.1e-09 Score=112.66 Aligned_cols=186 Identities=18% Similarity=0.224 Sum_probs=114.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccc-eEEEEEeCCCCCHHHHHHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQ-FKAWACVSEDFDVFRVTKSI 279 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~-~~~wv~v~~~~~~~~~~~~i 279 (962)
.+++|++..++.+.+++.... .+.+.|+|++|+||||+|+.+++... ...+. ..++++.+..... ...+++
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~-~~i~~~ 92 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGN------MPHMIISGMPGIGKTTSVHCLAHELL-GRSYADGVLELNASDDRGI-DVVRNQ 92 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCC------CCCEEEECSTTSSHHHHHHHHHHHHH-GGGHHHHEEEECTTSCCSH-HHHHTH
T ss_pred HHHHCCHHHHHHHHHHHHcCC------CCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCCEEEecCccccCh-HHHHHH
Confidence 458999999999999986542 23389999999999999999987421 11111 2334433332222 112222
Q ss_pred HHHhccCCCCCCccHHHHHHHHHhHh-CCceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEEEecChh-hHh-hhCC
Q 038637 280 LKSIANDQSNNDDDLNLLQEKLKKQL-SGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVVTTRNLD-VAN-LTRA 356 (962)
Q Consensus 280 l~~l~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~-~~~~ 356 (962)
++.+.... ..+ .+++.++|+||++.-....++.+...+.....++++|+||.... +.. ....
T Consensus 93 ~~~~~~~~---------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr 157 (323)
T 1sxj_B 93 IKHFAQKK---------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQ 157 (323)
T ss_dssp HHHHHHBC---------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTT
T ss_pred HHHHHhcc---------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhh
Confidence 22221100 011 45688999999976554455555544444446778888887632 111 1122
Q ss_pred CCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChH-HHHHHHh
Q 038637 357 YPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPL-AAKTLGG 413 (962)
Q Consensus 357 ~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPL-ai~~~~~ 413 (962)
...+.+.+++.++..+++...+.... . .-..+....|++.|+|.|. |+..+..
T Consensus 158 ~~~i~~~~~~~~~~~~~l~~~~~~~~-~---~~~~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 158 CAILRYSKLSDEDVLKRLLQIIKLED-V---KYTNDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHT-C---CBCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ceEEeecCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 34789999999999999988653211 1 1224667889999999995 4554443
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.85 E-value=1.6e-08 Score=109.95 Aligned_cols=96 Identities=11% Similarity=0.249 Sum_probs=54.5
Q ss_pred CCcccEEEeCCCcCcccccccccCCCcCCeEeccCCCCccccc-cccc--------cccCcEEeeCCCccccccch-hcc
Q 038637 614 LPRLRVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPE-SINS--------LYNLHTILLENCWELKKLCK-DMG 683 (962)
Q Consensus 614 l~~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~-~i~~--------L~~L~~L~L~~~~~l~~lp~-~i~ 683 (962)
+++|++|||++| .+......-+.+..++++.+..+ .+|. .+.+ +.+|+.|+|.+ .+..++. .+.
T Consensus 48 l~~L~~LdLs~n-~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~ 121 (329)
T 3sb4_A 48 FPSLKVLDISNA-EIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFK 121 (329)
T ss_dssp CTTCCEEEEEEE-EECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTTTT
T ss_pred hccCeEEecCcc-eeEEecCcccccccccccccccc---ccCHHHhcccccccccccCCCcEEECCc--cccchhHHHhh
Confidence 778888888888 45521111122233455555555 3333 3455 78888888876 4555544 477
Q ss_pred cCCCccEEecCCCCCccccCCCCCCCCCCCcc
Q 038637 684 NLTKLRHLRNSDAGLLEEMPKGFGKLTSLLTL 715 (962)
Q Consensus 684 ~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~L 715 (962)
.+++|+.|++..+.....-+..|..+.++..+
T Consensus 122 ~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l 153 (329)
T 3sb4_A 122 GCDNLKICQIRKKTAPNLLPEALADSVTAIFI 153 (329)
T ss_dssp TCTTCCEEEBCCSSCCEECTTSSCTTTCEEEE
T ss_pred cCcccceEEcCCCCccccchhhhcCCCceEEe
Confidence 88888888888776332223335544444433
No 143
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.85 E-value=2.2e-09 Score=105.02 Aligned_cols=100 Identities=25% Similarity=0.374 Sum_probs=84.2
Q ss_pred hCCCCcccEEEeCCCcCcccccccccCCC-cCCeEeccCCCCccccccccccccCcEEeeCCCccccccchhc-ccCCCc
Q 038637 611 LNHLPRLRVFSLCGYCNIFNLPNEIGNLK-HLRCLNLSRTRIQILPESINSLYNLHTILLENCWELKKLCKDM-GNLTKL 688 (962)
Q Consensus 611 l~~l~~Lr~L~L~~~~~~~~lp~~i~~L~-~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i-~~L~~L 688 (962)
+..+.+|++|++++| .+..+|. +..+. +|++|+|++|.++.+ ..++.+++|++|++++| .+..+|..+ ..+++|
T Consensus 15 ~~~~~~L~~L~l~~n-~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGY-KIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTS-CCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCC-CCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCC-cccccCcchhhcCCCC
Confidence 456889999999999 7888865 55555 999999999999988 68899999999999999 777887665 899999
Q ss_pred cEEecCCCCCccccCC--CCCCCCCCCcc
Q 038637 689 RHLRNSDAGLLEEMPK--GFGKLTSLLTL 715 (962)
Q Consensus 689 ~~L~l~~~~~~~~~p~--~i~~l~~L~~L 715 (962)
++|++++|. +..+|. .++.+++|++|
T Consensus 91 ~~L~L~~N~-i~~~~~~~~l~~l~~L~~L 118 (176)
T 1a9n_A 91 TELILTNNS-LVELGDLDPLASLKSLTYL 118 (176)
T ss_dssp CEEECCSCC-CCCGGGGGGGGGCTTCCEE
T ss_pred CEEECCCCc-CCcchhhHhhhcCCCCCEE
Confidence 999999998 566775 56667777666
No 144
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.84 E-value=7.7e-09 Score=102.69 Aligned_cols=98 Identities=29% Similarity=0.461 Sum_probs=69.7
Q ss_pred CcccEEEeCCCcCcccccccccCCCcCCeEeccCCCCccccc-cccccccCcEEeeCCCccccccc-hhcccCCCccEEe
Q 038637 615 PRLRVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPE-SINSLYNLHTILLENCWELKKLC-KDMGNLTKLRHLR 692 (962)
Q Consensus 615 ~~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~ 692 (962)
+.|++|+|++| .+..+|..+.++.+|++|+|++|.|+.+|. .+.++++|++|+|++| .+..+| ..+..+++|++|+
T Consensus 31 ~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~ 108 (193)
T 2wfh_A 31 RDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRTFDGLKSLRLLS 108 (193)
T ss_dssp TTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCC-cCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC-ccCEeCHHHhCCCCCCCEEE
Confidence 46778888877 677777777788888888888888776654 5777888888888877 455554 3577778888888
Q ss_pred cCCCCCccccCCC-CCCCCCCCcc
Q 038637 693 NSDAGLLEEMPKG-FGKLTSLLTL 715 (962)
Q Consensus 693 l~~~~~~~~~p~~-i~~l~~L~~L 715 (962)
+++|. +..+|.. +..+++|+.|
T Consensus 109 L~~N~-l~~~~~~~~~~l~~L~~L 131 (193)
T 2wfh_A 109 LHGND-ISVVPEGAFNDLSALSHL 131 (193)
T ss_dssp CCSSC-CCBCCTTTTTTCTTCCEE
T ss_pred CCCCC-CCeeChhhhhcCccccEE
Confidence 88776 4555543 5566666655
No 145
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.82 E-value=9.8e-09 Score=113.28 Aligned_cols=122 Identities=20% Similarity=0.242 Sum_probs=80.6
Q ss_pred CCeeEEccCCCccccccccccCcchhhhC-CCCcccEEEeCCCcCccccc-ccccCCCcCCeEeccCCCCccccc-cccc
Q 038637 584 EHLRTFLPVNLSDYRRNYLAWSVPHMLLN-HLPRLRVFSLCGYCNIFNLP-NEIGNLKHLRCLNLSRTRIQILPE-SINS 660 (962)
Q Consensus 584 ~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~-~l~~Lr~L~L~~~~~~~~lp-~~i~~L~~Lr~L~Ls~~~i~~lp~-~i~~ 660 (962)
..++.|.+.++. + ..++...+. ++++|++|+|++| .+..++ ..|.++.+|++|+|++|.++.+|. .+..
T Consensus 39 ~~l~~L~Ls~N~------l-~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 110 (361)
T 2xot_A 39 SYTALLDLSHNN------L-SRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSD 110 (361)
T ss_dssp TTCSEEECCSSC------C-CEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred CCCCEEECCCCC------C-CccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCC
Confidence 346666665542 1 223444455 7778888888877 566665 457778888888888888877665 4677
Q ss_pred cccCcEEeeCCCcccccc-chhcccCCCccEEecCCCCCccccCCCC----CCCCCCCcc
Q 038637 661 LYNLHTILLENCWELKKL-CKDMGNLTKLRHLRNSDAGLLEEMPKGF----GKLTSLLTL 715 (962)
Q Consensus 661 L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~i----~~l~~L~~L 715 (962)
+.+|++|+|++| .+..+ |..+..+++|++|++++|. +..+|..+ +.+++|+.|
T Consensus 111 l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L 168 (361)
T 2xot_A 111 LQALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLL 168 (361)
T ss_dssp CTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEE
T ss_pred CcCCCEEECCCC-cccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEE
Confidence 888888888887 44444 5667778888888888776 55566543 456666665
No 146
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.81 E-value=1.2e-08 Score=101.27 Aligned_cols=95 Identities=19% Similarity=0.234 Sum_probs=79.9
Q ss_pred cEEEeCCCcCcccccccccCCCcCCeEeccCCCCcccccc--ccccccCcEEeeCCCcccccc-chhcccCCCccEEecC
Q 038637 618 RVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPES--INSLYNLHTILLENCWELKKL-CKDMGNLTKLRHLRNS 694 (962)
Q Consensus 618 r~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~--i~~L~~L~~L~L~~~~~l~~l-p~~i~~L~~L~~L~l~ 694 (962)
++|+++++ .+..+|..+.. +|++|+|++|.++.+|.. ++++++|++|+|++| .+..+ |..+..+++|++|+++
T Consensus 11 ~~l~~s~~-~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 11 TTVDCTGR-GLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TEEECTTS-CCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECC
T ss_pred CEEEcCCC-CcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECC
Confidence 78999999 78999987754 999999999999988874 899999999999999 55555 7889999999999999
Q ss_pred CCCCccccCCCCCCCCCCCccC
Q 038637 695 DAGLLEEMPKGFGKLTSLLTLG 716 (962)
Q Consensus 695 ~~~~~~~~p~~i~~l~~L~~L~ 716 (962)
+|......|..++.+++|++|.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEE
T ss_pred CCcCCccCHHHhcCCCCCCEEE
Confidence 9984444444577888887773
No 147
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.81 E-value=6.5e-09 Score=101.23 Aligned_cols=89 Identities=19% Similarity=0.295 Sum_probs=71.8
Q ss_pred CcccEEEeCCCcCcccc-cccccCCCcCCeEeccCCCCcccccc-ccccccCcEEeeCCCccccccchh-cccCCCccEE
Q 038637 615 PRLRVFSLCGYCNIFNL-PNEIGNLKHLRCLNLSRTRIQILPES-INSLYNLHTILLENCWELKKLCKD-MGNLTKLRHL 691 (962)
Q Consensus 615 ~~Lr~L~L~~~~~~~~l-p~~i~~L~~Lr~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L 691 (962)
++|++|+|++| .+..+ |..|.++.+|++|+|++|.++.+|.. +.++++|++|+|++| .+..+|.. +..+++|++|
T Consensus 33 ~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L 110 (174)
T 2r9u_A 33 TDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN-HLKSIPRGAFDNLKSLTHI 110 (174)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEE
T ss_pred CCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC-ccceeCHHHhccccCCCEE
Confidence 67899999998 57666 56788999999999999999988876 478999999999988 67777765 7889999999
Q ss_pred ecCCCCCccccCCCC
Q 038637 692 RNSDAGLLEEMPKGF 706 (962)
Q Consensus 692 ~l~~~~~~~~~p~~i 706 (962)
++++|. +...|..+
T Consensus 111 ~L~~N~-~~c~~~~~ 124 (174)
T 2r9u_A 111 YLYNNP-WDCECRDI 124 (174)
T ss_dssp ECCSSC-BCTTBGGG
T ss_pred EeCCCC-cccccccH
Confidence 999887 44444433
No 148
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.79 E-value=2e-08 Score=99.67 Aligned_cols=94 Identities=26% Similarity=0.352 Sum_probs=80.1
Q ss_pred cEEEeCCCcCcccccccccCCCcCCeEeccCCCCccccccccccccCcEEeeCCCccccccc-hhcccCCCccEEecCCC
Q 038637 618 RVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLENCWELKKLC-KDMGNLTKLRHLRNSDA 696 (962)
Q Consensus 618 r~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~ 696 (962)
++++++++ .+..+|..+. .+|++|+|++|.++.+|..+.++++|++|+|++| .+..++ ..+..+++|++|++++|
T Consensus 13 ~~l~~~~~-~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNK-GLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTS-CCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCC-CCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCC
Confidence 68899998 7889997664 6899999999999999999999999999999999 666665 56899999999999999
Q ss_pred CCccccC-CCCCCCCCCCccC
Q 038637 697 GLLEEMP-KGFGKLTSLLTLG 716 (962)
Q Consensus 697 ~~~~~~p-~~i~~l~~L~~L~ 716 (962)
. +..+| ..++.+++|++|.
T Consensus 89 ~-l~~i~~~~f~~l~~L~~L~ 108 (193)
T 2wfh_A 89 R-LRCIPPRTFDGLKSLRLLS 108 (193)
T ss_dssp C-CCBCCTTTTTTCTTCCEEE
T ss_pred c-cCEeCHHHhCCCCCCCEEE
Confidence 8 44554 4688888888773
No 149
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.79 E-value=1.4e-08 Score=99.31 Aligned_cols=86 Identities=26% Similarity=0.419 Sum_probs=40.3
Q ss_pred hhCCCCcccEEEeCCCcCcccccc-cccCCCcCCeEeccCCCCcccccc-ccccccCcEEeeCCCccccccchh-cccCC
Q 038637 610 LLNHLPRLRVFSLCGYCNIFNLPN-EIGNLKHLRCLNLSRTRIQILPES-INSLYNLHTILLENCWELKKLCKD-MGNLT 686 (962)
Q Consensus 610 ~l~~l~~Lr~L~L~~~~~~~~lp~-~i~~L~~Lr~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~ 686 (962)
.+..+++|++|+|++| .+..+|. .+..+.+|++|+|++|.++.+|.. +.++++|++|++++| .+..+|.. +..++
T Consensus 47 ~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~ 124 (177)
T 2o6r_A 47 VFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLT 124 (177)
T ss_dssp TTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCT
T ss_pred HhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCc
Confidence 3444455555555554 3444432 234455555555555555544432 344555555555554 33344433 24455
Q ss_pred CccEEecCCCC
Q 038637 687 KLRHLRNSDAG 697 (962)
Q Consensus 687 ~L~~L~l~~~~ 697 (962)
+|++|++++|.
T Consensus 125 ~L~~L~l~~N~ 135 (177)
T 2o6r_A 125 SLQKIWLHTNP 135 (177)
T ss_dssp TCCEEECCSSC
T ss_pred ccCEEEecCCC
Confidence 55555555444
No 150
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.75 E-value=2.4e-10 Score=114.44 Aligned_cols=125 Identities=20% Similarity=0.267 Sum_probs=79.0
Q ss_pred cccCCCCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCcccccccccCCCcCCeEeccCCCCccccccc
Q 038637 579 SVCDVEHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESI 658 (962)
Q Consensus 579 ~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i 658 (962)
.+..+++|+.|.+.++. +. .+| .+.++++|++|++++| .+..+|..+..+++|++|+|++|.++.+| .+
T Consensus 43 ~~~~l~~L~~L~ls~n~------l~-~l~--~~~~l~~L~~L~l~~n-~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~ 111 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNN------IE-KIS--SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYNQIASLS-GI 111 (198)
T ss_dssp HHHHTTTCSEEECSEEE------ES-CCC--CHHHHTTCCEEEEEEE-EECSCSSHHHHHHHCSEEEEEEEECCCHH-HH
T ss_pred HHhcCCCCCEEECCCCC------Cc-ccc--ccccCCCCCEEECCCC-CcccccchhhcCCcCCEEECcCCcCCcCC-cc
Confidence 34566677777665532 22 233 3556677777777777 56667766666777777777777777766 56
Q ss_pred cccccCcEEeeCCCccccccch--hcccCCCccEEecCCCCCccccCCC----------CCCCCCCCcc
Q 038637 659 NSLYNLHTILLENCWELKKLCK--DMGNLTKLRHLRNSDAGLLEEMPKG----------FGKLTSLLTL 715 (962)
Q Consensus 659 ~~L~~L~~L~L~~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~~p~~----------i~~l~~L~~L 715 (962)
.++++|++|++++| .+..+|. .+..+++|++|++++|......|.. +..+++|+.|
T Consensus 112 ~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~L 179 (198)
T 1ds9_A 112 EKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179 (198)
T ss_dssp HHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEE
T ss_pred ccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEE
Confidence 77777777777777 5555543 5677777777777777643333322 4555555555
No 151
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.74 E-value=2.1e-08 Score=97.61 Aligned_cols=95 Identities=24% Similarity=0.391 Sum_probs=82.3
Q ss_pred ccEEEeCCCcCcccccccccCCCcCCeEeccCCCCccc-cccccccccCcEEeeCCCccccccchh-cccCCCccEEecC
Q 038637 617 LRVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQIL-PESINSLYNLHTILLENCWELKKLCKD-MGNLTKLRHLRNS 694 (962)
Q Consensus 617 Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~ 694 (962)
-+.++++++ .+..+|..+. .+|++|+|++|.++.+ |..+.++++|++|+|++| .+..+|.. +..+++|++|+++
T Consensus 14 ~~~l~~~~n-~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNI-RLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCC-CCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECC
Confidence 378999998 7899998775 8999999999999988 567899999999999999 78888876 5899999999999
Q ss_pred CCCCccccCCC-CCCCCCCCccC
Q 038637 695 DAGLLEEMPKG-FGKLTSLLTLG 716 (962)
Q Consensus 695 ~~~~~~~~p~~-i~~l~~L~~L~ 716 (962)
+|. +..+|.. ++.+++|++|.
T Consensus 90 ~N~-l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 90 DNH-LKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp SSC-CCCCCTTTTTTCTTCSEEE
T ss_pred CCc-cceeCHHHhccccCCCEEE
Confidence 998 6677765 88888888874
No 152
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.69 E-value=3.8e-08 Score=95.40 Aligned_cols=81 Identities=25% Similarity=0.419 Sum_probs=51.0
Q ss_pred CcccEEEeCCCcCcccc-cccccCCCcCCeEeccCCCCcccccc-ccccccCcEEeeCCCccccccchh-cccCCCccEE
Q 038637 615 PRLRVFSLCGYCNIFNL-PNEIGNLKHLRCLNLSRTRIQILPES-INSLYNLHTILLENCWELKKLCKD-MGNLTKLRHL 691 (962)
Q Consensus 615 ~~Lr~L~L~~~~~~~~l-p~~i~~L~~Lr~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L 691 (962)
+.|++|+|++| .+..+ |..|.++.+|++|+|++|.|+.+|.. +.++++|++|+|++| .+..+|.. +..+++|++|
T Consensus 30 ~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L 107 (170)
T 3g39_A 30 TTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPRGAFDNLKSLTHI 107 (170)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred CCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC-ccCEeCHHHhcCCCCCCEE
Confidence 55666666666 45555 45566666666666666666666654 356666666666666 45555543 5666666666
Q ss_pred ecCCCC
Q 038637 692 RNSDAG 697 (962)
Q Consensus 692 ~l~~~~ 697 (962)
++++|.
T Consensus 108 ~L~~N~ 113 (170)
T 3g39_A 108 WLLNNP 113 (170)
T ss_dssp ECCSSC
T ss_pred EeCCCC
Confidence 666665
No 153
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.69 E-value=3.7e-08 Score=95.47 Aligned_cols=97 Identities=26% Similarity=0.361 Sum_probs=80.8
Q ss_pred cccEEEeCCCcCcccccccccCCCcCCeEeccCCCCccc-cccccccccCcEEeeCCCccccccchh-cccCCCccEEec
Q 038637 616 RLRVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQIL-PESINSLYNLHTILLENCWELKKLCKD-MGNLTKLRHLRN 693 (962)
Q Consensus 616 ~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l 693 (962)
..++|+++++ .+..+|..+. .+|++|+|++|.|+.+ |..+.++++|++|+|++| .+..+|.. +..+++|++|++
T Consensus 10 ~~~~l~~s~n-~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 10 SGTTVDCSGK-SLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp ETTEEECTTS-CCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEeCCC-CcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEEC
Confidence 3578999998 7888997764 8899999999999987 557899999999999999 67777765 589999999999
Q ss_pred CCCCCccccCC-CCCCCCCCCccCC
Q 038637 694 SDAGLLEEMPK-GFGKLTSLLTLGR 717 (962)
Q Consensus 694 ~~~~~~~~~p~-~i~~l~~L~~L~~ 717 (962)
++|. +..+|. .++.+++|++|..
T Consensus 86 ~~N~-l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 86 NDNQ-LKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp CSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred CCCc-cCEeCHHHhcCCCCCCEEEe
Confidence 9998 566665 4888888888743
No 154
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.67 E-value=7e-08 Score=104.90 Aligned_cols=187 Identities=12% Similarity=0.083 Sum_probs=113.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhccc-ceEEEEEeCCCCCHHHHHHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHF-QFKAWACVSEDFDVFRVTKSI 279 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F-~~~~wv~v~~~~~~~~~~~~i 279 (962)
.+++|++..++.+..++... ..+.+.|+|++|+||||+|+.+++... ...+ ...+.+..+..... ...+..
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~-~~~~~~ 96 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTG------SMPHLLFAGPPGVGKTTAALALARELF-GENWRHNFLELNASDERGI-NVIREK 96 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHT------CCCEEEEESCTTSSHHHHHHHHHHHHH-GGGHHHHEEEEETTCHHHH-HTTHHH
T ss_pred HHhhCCHHHHHHHHHHHHcC------CCCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCceEEeeccccCch-HHHHHH
Confidence 45899999999999998654 234589999999999999999987421 1111 11233333221110 001111
Q ss_pred HHHhccCCCCCCccHHHHHHHHHhHhCCceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEEEecChhh-Hhh-hCCC
Q 038637 280 LKSIANDQSNNDDDLNLLQEKLKKQLSGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVVTTRNLDV-ANL-TRAY 357 (962)
Q Consensus 280 l~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v-~~~-~~~~ 357 (962)
+..+.... ....+++.++|+||++.-....++.+...+.....++++|+||....- ... ....
T Consensus 97 ~~~~~~~~---------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~ 161 (327)
T 1iqp_A 97 VKEFARTK---------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRC 161 (327)
T ss_dssp HHHHHHSC---------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTE
T ss_pred HHHHHhhC---------------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhC
Confidence 11110000 011257889999999765545555555545444467788888876421 111 1122
Q ss_pred CcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHHHHHHhh
Q 038637 358 PKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAAKTLGGL 414 (962)
Q Consensus 358 ~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~~~ 414 (962)
..+.+.+++.++..+++...+.... ..-..+....|++.++|.|-.+..+...
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~~~~~~----~~~~~~~~~~l~~~~~g~~r~~~~~l~~ 214 (327)
T 1iqp_A 162 AIFRFRPLRDEDIAKRLRYIAENEG----LELTEEGLQAILYIAEGDMRRAINILQA 214 (327)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTT----CEECHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cEEEecCCCHHHHHHHHHHHHHhcC----CCCCHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3688999999999999987764221 1233567788999999999866554433
No 155
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.66 E-value=7.6e-10 Score=110.75 Aligned_cols=101 Identities=21% Similarity=0.288 Sum_probs=85.2
Q ss_pred hhCCCCcccEEEeCCCcCcccccccccCCCcCCeEeccCCCCccccccccccccCcEEeeCCCccccccchhcccCCCcc
Q 038637 610 LLNHLPRLRVFSLCGYCNIFNLPNEIGNLKHLRCLNLSRTRIQILPESINSLYNLHTILLENCWELKKLCKDMGNLTKLR 689 (962)
Q Consensus 610 ~l~~l~~Lr~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~ 689 (962)
.+..+++|++|+|++| .+..+| .+.++++|++|++++|.++.+|..+..+++|++|++++| .+..+| .+..+++|+
T Consensus 43 ~~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~~~l~~L~ 118 (198)
T 1ds9_A 43 TLSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLS-GIEKLVNLR 118 (198)
T ss_dssp HHHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECCCHH-HHHHHHHSS
T ss_pred HHhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC-cCCcCC-ccccCCCCC
Confidence 4678999999999999 688888 899999999999999999999998889999999999999 777787 688999999
Q ss_pred EEecCCCCCccccCC--CCCCCCCCCcc
Q 038637 690 HLRNSDAGLLEEMPK--GFGKLTSLLTL 715 (962)
Q Consensus 690 ~L~l~~~~~~~~~p~--~i~~l~~L~~L 715 (962)
+|++++|. +..+|. .+..+++|++|
T Consensus 119 ~L~l~~N~-i~~~~~~~~l~~l~~L~~L 145 (198)
T 1ds9_A 119 VLYMSNNK-ITNWGEIDKLAALDKLEDL 145 (198)
T ss_dssp EEEESEEE-CCCHHHHHHHTTTTTCSEE
T ss_pred EEECCCCc-CCchhHHHHHhcCCCCCEE
Confidence 99999987 444442 45566666555
No 156
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.63 E-value=2.4e-08 Score=108.64 Aligned_cols=271 Identities=15% Similarity=0.113 Sum_probs=137.3
Q ss_pred CCcccEEEeCCCcCcccccccccC-CCcCCeEeccCCCCccccccccccccCcEEeeCCCccccccch-hccc-------
Q 038637 614 LPRLRVFSLCGYCNIFNLPNEIGN-LKHLRCLNLSRTRIQILPESINSLYNLHTILLENCWELKKLCK-DMGN------- 684 (962)
Q Consensus 614 l~~Lr~L~L~~~~~~~~lp~~i~~-L~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~L~L~~~~~l~~lp~-~i~~------- 684 (962)
+..|+.|.++|+-....+ ..+.. +.+|++|||++|.|......-+.++.+..+.+..+ .+|. .+.+
T Consensus 24 ~~~l~~L~l~g~i~~~~~-~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~----~I~~~aF~~~~~~~~~ 98 (329)
T 3sb4_A 24 ANSITHLTLTGKLNAEDF-RHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN----FVPAYAFSNVVNGVTK 98 (329)
T ss_dssp HHHCSEEEEEEEECHHHH-HHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT----EECTTTTEEEETTEEE
T ss_pred hCceeEEEEeccccHHHH-HHHHHhhccCeEEecCcceeEEecCcccccccccccccccc----ccCHHHhccccccccc
Confidence 457888888875211112 22333 78899999999998822222223334555666555 2333 4566
Q ss_pred -CCCccEEecCCCCCccccCC-CCCCCCCCCccCCeEeC--CCCCCCcccccCcccCCCeEEEeccCCCC--Chhhhhhh
Q 038637 685 -LTKLRHLRNSDAGLLEEMPK-GFGKLTSLLTLGRFVVG--KDSGSGLRELKSLTHLQGTLRISKLENVE--DVGDACEA 758 (962)
Q Consensus 685 -L~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~~~~~~--~~~~~~~~~l~~L~~L~~~L~i~~l~~~~--~~~~~~~~ 758 (962)
+++|+.|++.. . +..++. .|..+++|+.+..-... ......+..+.++. .+..-.... ....-...
T Consensus 99 g~~~L~~l~L~~-~-i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~------~l~~~~~~~~~~~~~i~~~ 170 (329)
T 3sb4_A 99 GKQTLEKVILSE-K-IKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAI------FIPLGSSDAYRFKNRWEHF 170 (329)
T ss_dssp ECTTCCC-CBCT-T-CCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEE------EECTTCTHHHHTSTTTTTS
T ss_pred ccCCCcEEECCc-c-ccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceE------EecCcchhhhhcccccccc
Confidence 99999999988 4 566665 48888888887432111 11111222211111 111000000 00000001
Q ss_pred cCcCCcCCC-ceEEeccCCCCCCccchhhHHhhhccCCCCCCcCeEEEeecCCCCCCcCcCCCCCCCccEEEEeCCCCCC
Q 038637 759 QLNNKVNLR-TLLLDWSARDVQNLDQCEFETRVLSMLKPHRDVQELTIRGYGGTKFPIWLGDSSFSKLVNLKFGYCRMCT 837 (962)
Q Consensus 759 ~l~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~ 837 (962)
.+.++..|+ .+.+.... .........-..+.++..+.+.+.-.......+. ..+++|+.|+|.+|.+.
T Consensus 171 ~f~~~~~L~~~i~~~~~~---------~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~-~~~~~L~~l~L~~n~i~- 239 (329)
T 3sb4_A 171 AFIEGEPLETTIQVGAMG---------KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIR-DYMPNLVSLDISKTNAT- 239 (329)
T ss_dssp CEEESCCCEEEEEECTTC---------CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHH-HHCTTCCEEECTTBCCC-
T ss_pred ccccccccceeEEecCCC---------cHHHHHhhcccCccccceEEEeeeecHHHHHHHH-HhcCCCeEEECCCCCcc-
Confidence 122333333 22222111 1122233333345667777777642111000010 12577888888877644
Q ss_pred CCC--CCCCCCCcCeEeecCCCCceEeCccccCCCCCCCCCCcc-eeeccccccccccccccCCccccCcCCccceEeEc
Q 038637 838 SLP--SVGQLPLLKHLKISGMDRVKSVGLEFYGSSCSVPFPSLE-TLSFSDMREWEEWISCGAGQEVDEVFPKLRKLSLF 914 (962)
Q Consensus 838 ~l~--~l~~lp~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~-~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~ 914 (962)
.+| .+..+++|+.|.|.++ +..++...+.. +++|+ .+.+.+ +++.+.. .....+++|+.|++.
T Consensus 240 ~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~-----~~~L~~~l~l~~--~l~~I~~-----~aF~~c~~L~~l~l~ 305 (329)
T 3sb4_A 240 TIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSN-----CGRLAGTLELPA--SVTAIEF-----GAFMGCDNLRYVLAT 305 (329)
T ss_dssp EECTTTTTTCTTCCEEECCTT--CCEECTTTTTT-----CTTCCEEEEECT--TCCEECT-----TTTTTCTTEEEEEEC
T ss_pred eecHhhhhCCCCCCEEECCcc--cceehHHHhhC-----ChhccEEEEEcc--cceEEch-----hhhhCCccCCEEEeC
Confidence 344 5777888888888764 66665543222 67777 777765 4444422 123446777777776
Q ss_pred cCCCccccCC
Q 038637 915 NCYKLQGTLP 924 (962)
Q Consensus 915 ~c~~L~~~lp 924 (962)
.+ +++ .++
T Consensus 306 ~n-~i~-~I~ 313 (329)
T 3sb4_A 306 GD-KIT-TLG 313 (329)
T ss_dssp SS-CCC-EEC
T ss_pred CC-ccC-ccc
Confidence 64 555 454
No 157
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.62 E-value=9.1e-08 Score=93.56 Aligned_cols=100 Identities=29% Similarity=0.450 Sum_probs=83.2
Q ss_pred CCcccEEEeCCCcCcccccc-cccCCCcCCeEeccCCCCcccccc-ccccccCcEEeeCCCccccccchh-cccCCCccE
Q 038637 614 LPRLRVFSLCGYCNIFNLPN-EIGNLKHLRCLNLSRTRIQILPES-INSLYNLHTILLENCWELKKLCKD-MGNLTKLRH 690 (962)
Q Consensus 614 l~~Lr~L~L~~~~~~~~lp~-~i~~L~~Lr~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~ 690 (962)
.++|++|++++| .+..+|. .++.+.+|++|+|++|.++.+|.. +..+++|++|++++| .+..+|.. +..+++|++
T Consensus 27 ~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~ 104 (177)
T 2o6r_A 27 PSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKE 104 (177)
T ss_dssp CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred CCCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC-CccccCHHHhhCCcccCE
Confidence 368999999999 6777764 578999999999999999988875 689999999999999 67677664 689999999
Q ss_pred EecCCCCCccccCCC-CCCCCCCCccC
Q 038637 691 LRNSDAGLLEEMPKG-FGKLTSLLTLG 716 (962)
Q Consensus 691 L~l~~~~~~~~~p~~-i~~l~~L~~L~ 716 (962)
|++++|. +..+|.. +..+++|++|.
T Consensus 105 L~l~~N~-l~~~~~~~~~~l~~L~~L~ 130 (177)
T 2o6r_A 105 LALDTNQ-LKSVPDGIFDRLTSLQKIW 130 (177)
T ss_dssp EECCSSC-CSCCCTTTTTTCTTCCEEE
T ss_pred EECcCCc-ceEeCHHHhcCCcccCEEE
Confidence 9999998 5666665 46777777763
No 158
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.56 E-value=3.2e-07 Score=96.97 Aligned_cols=172 Identities=12% Similarity=0.049 Sum_probs=106.0
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhc------ccceEEEEEeCCCCCHHHH
Q 038637 202 EVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQR------HFQFKAWACVSEDFDVFRV 275 (962)
Q Consensus 202 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~------~F~~~~wv~v~~~~~~~~~ 275 (962)
.+.|||++.++|...|...-. .+..+.+.|+|++|+|||++|+.|++...... .| ..+.+++....+...+
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~--~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~INc~~~~t~~~~ 97 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLM--SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHIDALELAGMDAL 97 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEEETTCCC--HHH
T ss_pred ccCCHHHHHHHHHHHHHHHhc--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEEeccccCCHHHH
Confidence 377999999999988865432 24567889999999999999999998532111 12 3567787888889999
Q ss_pred HHHHHHHhccCCCCCCccHHHHHHHHHhH--hCCceEEEEEecCCCCCccchhhccCCCCC-CCCCc--EEEEEecChh-
Q 038637 276 TKSILKSIANDQSNNDDDLNLLQEKLKKQ--LSGNKFLLVLDDVWNKNYNYWSILSCPFGA-GAPGS--KIVVTTRNLD- 349 (962)
Q Consensus 276 ~~~il~~l~~~~~~~~~~~~~~~~~l~~~--l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~-~~~gs--~ilvTtR~~~- 349 (962)
+..|++++.+.........+.+...+... -.++++++|||++..-. .-+.+...+.. ....+ .||.++...+
T Consensus 98 ~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~ 175 (318)
T 3te6_A 98 YEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVT 175 (318)
T ss_dssp HHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCC
T ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCccc
Confidence 99999999765321222333344333332 24678999999995432 11122111110 01222 3344443321
Q ss_pred ----h----HhhhCCCCcccCCCCCHHHHHHHHHHhhc
Q 038637 350 ----V----ANLTRAYPKYGLKELSDDDCLRVVIQHSL 379 (962)
Q Consensus 350 ----v----~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~ 379 (962)
+ ...+. ...+.+.+++.++-.+++.+++-
T Consensus 176 ~~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 176 IREQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp CHHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHHH
T ss_pred chhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHHH
Confidence 1 11221 14588999999999999988763
No 159
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.52 E-value=4.3e-07 Score=100.71 Aligned_cols=196 Identities=15% Similarity=0.117 Sum_probs=112.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSIL 280 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 280 (962)
.+++|++..++.+..++.... ....+.|+|++|+||||+|+.+++.......+. ...+.... ....+.
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-----~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~---~~~~~~~~----~~~~~~ 83 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-----IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT---ATPCGVCD----NCREIE 83 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-----CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC---SSCCSSSH----HHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC---CCCCcccH----HHHHHh
Confidence 359999999999999996543 234778999999999999999976321111100 00000000 001111
Q ss_pred HHh-------ccCCCCCCccHHHHHHHHHhH-hCCceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEEEecChh-hH
Q 038637 281 KSI-------ANDQSNNDDDLNLLQEKLKKQ-LSGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVVTTRNLD-VA 351 (962)
Q Consensus 281 ~~l-------~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~ 351 (962)
... .........+...+.+.+... ..+++.++|+||+..-+...++.+...+.....+..+|++|.... +.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 84 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp TSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSC
T ss_pred ccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCc
Confidence 000 000000122233333332211 135678999999966544445555544444445667777776432 11
Q ss_pred -hhhCCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHHHHHH
Q 038637 352 -NLTRAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAAKTLG 412 (962)
Q Consensus 352 -~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~ 412 (962)
........+++.+++.++..+++...+-.. +. ....+....|++.++|.|..+..+.
T Consensus 164 ~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~-~~---~~~~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 164 VTILSRCLQFHLKALDVEQIRHQLEHILNEE-HI---AHEPRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp HHHHTTSEEEECCCCCHHHHHHHHHHHHHHH-TC---CBCHHHHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHhheeEeeCCCCCHHHHHHHHHHHHHHc-CC---CCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 112223568999999999999998765221 11 1224667889999999998776654
No 160
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.50 E-value=6.9e-07 Score=96.58 Aligned_cols=182 Identities=11% Similarity=0.086 Sum_probs=111.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccc-eEEEEEeCCCCCHHHHHHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQ-FKAWACVSEDFDVFRVTKSI 279 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~-~~~wv~v~~~~~~~~~~~~i 279 (962)
.+++|++..++.+.+++... ..+.+.++|++|+|||++|+.+++... ...+. ..+.++.+....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~-------- 81 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERK------NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERG-------- 81 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTT------CCCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTC--------
T ss_pred HHHhCCHHHHHHHHHHHhCC------CCCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccC--------
Confidence 45899999999988887543 333489999999999999999987321 11111 122333332211
Q ss_pred HHHhccCCCCCCccHHHHHHHHHhH--h-CCceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEEEecChh-hHh-hh
Q 038637 280 LKSIANDQSNNDDDLNLLQEKLKKQ--L-SGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVVTTRNLD-VAN-LT 354 (962)
Q Consensus 280 l~~l~~~~~~~~~~~~~~~~~l~~~--l-~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~-~~ 354 (962)
.............. + .+++.++|+|++..-.....+.+...+.....+.++|+||.... +.. ..
T Consensus 82 -----------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~ 150 (319)
T 2chq_A 82 -----------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQ 150 (319)
T ss_dssp -----------TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHH
T ss_pred -----------hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHH
Confidence 01111111111111 1 25688999999966544455556665555456778888876543 111 11
Q ss_pred CCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHHHHHH
Q 038637 355 RAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAAKTLG 412 (962)
Q Consensus 355 ~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~ 412 (962)
.....+.+.+++.++..+++...+.... . .-..+....|++.++|.+-.+....
T Consensus 151 sr~~~i~~~~~~~~~~~~~l~~~~~~~~-~---~i~~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 151 SRCAVFRFKPVPKEAMKKRLLEICEKEG-V---KITEDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp TTCEEEECCCCCHHHHHHHHHHHHHTTC-C---CBCHHHHHHHHHTTTTCHHHHHHHH
T ss_pred hhCeEEEecCCCHHHHHHHHHHHHHHcC-C---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2234789999999999999987764321 1 1235667889999999997654433
No 161
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.47 E-value=1.2e-05 Score=89.64 Aligned_cols=320 Identities=11% Similarity=0.057 Sum_probs=166.4
Q ss_pred ccccCCCCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCccccc-ccccCCCcCCeEeccCCCCccccc
Q 038637 578 ESVCDVEHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFNLP-NEIGNLKHLRCLNLSRTRIQILPE 656 (962)
Q Consensus 578 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~lp-~~i~~L~~Lr~L~Ls~~~i~~lp~ 656 (962)
.+|.+|.+|+++.+.+. ...+....|.+|.+|+.++|..+ +..++ ..+.++..|+.+.+..+ +..++.
T Consensus 65 ~AF~~c~~L~~i~lp~~--------i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~ 133 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPST--------VREIGEFAFENCSKLEIINIPDS--VKMIGRCTFSGCYALKSILLPLM-LKSIGV 133 (394)
T ss_dssp TTTTTCTTEEEEECCTT--------CCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCCCCCCTT-CCEECT
T ss_pred HHhhCCCCceEEEeCCC--------ccCcchhHhhCCCCCcEEEeCCC--ceEccchhhcccccchhhcccCc-eeeecc
Confidence 45778888888877542 13455667888899999988764 66665 45778888888777543 333322
Q ss_pred -cccccccCcEEeeCCCccccccchhcccCCCccEEecCCCCCccccCC-CCCCCCCCCccCCeE-eCCCCCCCcccccC
Q 038637 657 -SINSLYNLHTILLENCWELKKLCKDMGNLTKLRHLRNSDAGLLEEMPK-GFGKLTSLLTLGRFV-VGKDSGSGLRELKS 733 (962)
Q Consensus 657 -~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~L~~~~-~~~~~~~~~~~l~~ 733 (962)
.+.++..++.........+. ...+.++++|+.+.+..+. ..++. .+..+.+|+.+..-. +.......+..+..
T Consensus 134 ~aF~~~~~~~~~~~~~~~~i~--~~aF~~c~~L~~i~l~~~~--~~I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~~~ 209 (394)
T 4fs7_A 134 EAFKGCDFKEITIPEGVTVIG--DEAFATCESLEYVSLPDSM--ETLHNGLFSGCGKLKSIKLPRNLKIIRDYCFAECIL 209 (394)
T ss_dssp TTTTTCCCSEEECCTTCCEEC--TTTTTTCTTCCEEECCTTC--CEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCTT
T ss_pred eeeecccccccccCccccccc--hhhhcccCCCcEEecCCcc--ceeccccccCCCCceEEEcCCCceEeCchhhccccc
Confidence 33444433333332221111 2346677777777776542 33332 355566666553210 00001112222222
Q ss_pred cccCCCeEEEeccCCCCChhhhhhhcCcCCcCCCceEEeccCCCCCCccchhhHHhhhccCCCCCCcCeEEEeecCCCCC
Q 038637 734 LTHLQGTLRISKLENVEDVGDACEAQLNNKVNLRTLLLDWSARDVQNLDQCEFETRVLSMLKPHRDVQELTIRGYGGTKF 813 (962)
Q Consensus 734 L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 813 (962)
|..+. +.. ... ......-....|+.+.+..... ......+..+..|+.+.+..+. ..+
T Consensus 210 L~~i~----~~~--~~~----~i~~~~~~~~~l~~i~ip~~~~-----------~i~~~~f~~~~~l~~~~~~~~~-~~i 267 (394)
T 4fs7_A 210 LENME----FPN--SLY----YLGDFALSKTGVKNIIIPDSFT-----------ELGKSVFYGCTDLESISIQNNK-LRI 267 (394)
T ss_dssp CCBCC----CCT--TCC----EECTTTTTTCCCCEEEECTTCC-----------EECSSTTTTCSSCCEEEECCTT-CEE
T ss_pred cceee----cCC--Cce----EeehhhcccCCCceEEECCCce-----------ecccccccccccceeEEcCCCc-cee
Confidence 22211 100 000 0001112234566665543220 0111234556777777776542 222
Q ss_pred CcCcCCCCCCCccEEEEeCCCCCCCCCCCCCCCCcCeEeecCCCCceEeCccccCCCCCCCCCCcceeeccccccccccc
Q 038637 814 PIWLGDSSFSKLVNLKFGYCRMCTSLPSVGQLPLLKHLKISGMDRVKSVGLEFYGSSCSVPFPSLETLSFSDMREWEEWI 893 (962)
Q Consensus 814 p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~ 893 (962)
+.... ..+.+|+.+.+......+ ..+..+.+|+.+.+.. .++.++...+. .+.+|+.+.|.+ +++.+.
T Consensus 268 ~~~~F-~~~~~l~~~~~~~~~i~~--~~F~~~~~L~~i~l~~--~i~~I~~~aF~-----~c~~L~~i~lp~--~v~~I~ 335 (394)
T 4fs7_A 268 GGSLF-YNCSGLKKVIYGSVIVPE--KTFYGCSSLTEVKLLD--SVKFIGEEAFE-----SCTSLVSIDLPY--LVEEIG 335 (394)
T ss_dssp CSCTT-TTCTTCCEEEECSSEECT--TTTTTCTTCCEEEECT--TCCEECTTTTT-----TCTTCCEECCCT--TCCEEC
T ss_pred ecccc-ccccccceeccCceeecc--cccccccccccccccc--ccceechhhhc-----CCCCCCEEEeCC--cccEEh
Confidence 22222 256667777665432111 1456778888888864 36666544222 277888888854 244442
Q ss_pred cccCCccccCcCCccceEeEccCCCccccCC----CCCCCcceEEEccc-cCccccCCCCCCcCEE
Q 038637 894 SCGAGQEVDEVFPKLRKLSLFNCYKLQGTLP----KRLLLLEKLVIKSC-HRLLVTIQCLPTLTEL 954 (962)
Q Consensus 894 ~~~~~~~~~~~~p~L~~L~l~~c~~L~~~lp----~~l~~L~~L~i~~c-~~l~~~l~~l~~L~~L 954 (962)
. .....+.+|+.+.+... ++ .++ .++.+|+.+++.+. ..+...+.++++|+.+
T Consensus 336 ~-----~aF~~c~~L~~i~lp~~--l~-~I~~~aF~~C~~L~~i~lp~~~~~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 336 K-----RSFRGCTSLSNINFPLS--LR-KIGANAFQGCINLKKVELPKRLEQYRYDFEDTTKFKWI 393 (394)
T ss_dssp T-----TTTTTCTTCCEECCCTT--CC-EECTTTBTTCTTCCEEEEEGGGGGGGGGBCTTCEEEEE
T ss_pred H-----HhccCCCCCCEEEECcc--cc-EehHHHhhCCCCCCEEEECCCCEEhhheecCCCCCcEE
Confidence 2 12334678888888653 55 454 35678888888543 2333457778888765
No 162
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.46 E-value=8.5e-06 Score=90.47 Aligned_cols=84 Identities=13% Similarity=0.106 Sum_probs=47.8
Q ss_pred cchhhhCCCCcccEEEeCCCcCccccc-ccccCCCcCCeEeccCCCCccccc-cccccccCcEEeeCCCccccccchhcc
Q 038637 606 VPHMLLNHLPRLRVFSLCGYCNIFNLP-NEIGNLKHLRCLNLSRTRIQILPE-SINSLYNLHTILLENCWELKKLCKDMG 683 (962)
Q Consensus 606 ~~~~~l~~l~~Lr~L~L~~~~~~~~lp-~~i~~L~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~i~ 683 (962)
++...|.++ +|+.+.+..+ +..++ ..|.+ ..|+.+.|.. .++.++. .+.++.+|+.+++.+| .+..+|...-
T Consensus 127 I~~~aF~~~-~L~~i~l~~~--i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF 200 (401)
T 4fdw_A 127 IPKDAFRNS-QIAKVVLNEG--LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTF 200 (401)
T ss_dssp ECTTTTTTC-CCSEEECCTT--CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTT
T ss_pred ehHhhcccC-CccEEEeCCC--ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCC-cceEechhhE
Confidence 444455554 5777776654 55554 33444 3577777664 4555543 4566677777777665 5555555443
Q ss_pred cCCCccEEecCC
Q 038637 684 NLTKLRHLRNSD 695 (962)
Q Consensus 684 ~L~~L~~L~l~~ 695 (962)
...+|+.+.+..
T Consensus 201 ~~~~L~~l~lp~ 212 (401)
T 4fdw_A 201 VYAGIEEVLLPV 212 (401)
T ss_dssp TTCCCSEEECCT
T ss_pred eecccCEEEeCC
Confidence 456666666543
No 163
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.45 E-value=3.5e-06 Score=93.55 Aligned_cols=103 Identities=16% Similarity=0.168 Sum_probs=77.2
Q ss_pred ccCCCCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCccccc-ccccCCCcCCeEeccCCCCccccccc
Q 038637 580 VCDVEHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFNLP-NEIGNLKHLRCLNLSRTRIQILPESI 658 (962)
Q Consensus 580 ~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~lp-~~i~~L~~Lr~L~Ls~~~i~~lp~~i 658 (962)
|.++ +|+++.+.+. ...+....|.++ .|+.+.+.. .+..++ ..|.++.+|+.++|++|.++.+|...
T Consensus 132 F~~~-~L~~i~l~~~--------i~~I~~~aF~~~-~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~a 199 (401)
T 4fdw_A 132 FRNS-QIAKVVLNEG--------LKSIGDMAFFNS-TVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKTKITKLPAST 199 (401)
T ss_dssp TTTC-CCSEEECCTT--------CCEECTTTTTTC-CCCEEECCT--TCCEECSSTTTTCTTCCEEECTTSCCSEECTTT
T ss_pred cccC-CccEEEeCCC--------ccEECHHhcCCC-CceEEEeCC--CccEehHHHhhCcccCCeeecCCCcceEechhh
Confidence 4443 5777765442 234555667775 699999986 477775 67899999999999999999999876
Q ss_pred cccccCcEEeeCCCccccccch-hcccCCCccEEecCCC
Q 038637 659 NSLYNLHTILLENCWELKKLCK-DMGNLTKLRHLRNSDA 696 (962)
Q Consensus 659 ~~L~~L~~L~L~~~~~l~~lp~-~i~~L~~L~~L~l~~~ 696 (962)
....+|+.+.+..+ +..++. .+.++++|+.+.+..+
T Consensus 200 F~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~ 236 (401)
T 4fdw_A 200 FVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN 236 (401)
T ss_dssp TTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT
T ss_pred EeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC
Confidence 66799999999854 555544 5778889999887653
No 164
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.36 E-value=6.3e-07 Score=98.18 Aligned_cols=89 Identities=18% Similarity=0.188 Sum_probs=70.7
Q ss_pred CcchhhhCCCCcccEEEeCC-CcCccccc-ccccCCCcCCeEeccCCCCccccc-cccccccCcEEeeCCCccccccchh
Q 038637 605 SVPHMLLNHLPRLRVFSLCG-YCNIFNLP-NEIGNLKHLRCLNLSRTRIQILPE-SINSLYNLHTILLENCWELKKLCKD 681 (962)
Q Consensus 605 ~~~~~~l~~l~~Lr~L~L~~-~~~~~~lp-~~i~~L~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp~~ 681 (962)
.+|. +..+.+|++|+|++ | .+..+| ..|++|.+|++|+|++|.|+.+|. .|.+|++|++|+|++| .+..+|..
T Consensus 23 ~ip~--l~~~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~ 98 (347)
T 2ifg_A 23 SLHH--LPGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN-ALESLSWK 98 (347)
T ss_dssp TTTT--SCSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS-CCSCCCST
T ss_pred ccCC--CCCCCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC-ccceeCHH
Confidence 4565 67788899999986 6 677776 678889999999999999887765 6788999999999988 67777766
Q ss_pred cccCCCccEEecCCCC
Q 038637 682 MGNLTKLRHLRNSDAG 697 (962)
Q Consensus 682 i~~L~~L~~L~l~~~~ 697 (962)
+....+|+.|++.+|.
T Consensus 99 ~~~~~~L~~l~l~~N~ 114 (347)
T 2ifg_A 99 TVQGLSLQELVLSGNP 114 (347)
T ss_dssp TTCSCCCCEEECCSSC
T ss_pred HcccCCceEEEeeCCC
Confidence 5444449999998887
No 165
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.33 E-value=9e-07 Score=96.97 Aligned_cols=95 Identities=17% Similarity=0.109 Sum_probs=77.6
Q ss_pred EEEeCCCcCcccccccccCCCcCCeEeccC-CCCccccc-cccccccCcEEeeCCCccccccc-hhcccCCCccEEecCC
Q 038637 619 VFSLCGYCNIFNLPNEIGNLKHLRCLNLSR-TRIQILPE-SINSLYNLHTILLENCWELKKLC-KDMGNLTKLRHLRNSD 695 (962)
Q Consensus 619 ~L~L~~~~~~~~lp~~i~~L~~Lr~L~Ls~-~~i~~lp~-~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~ 695 (962)
.+++++++.+..+|. +..+.+|++|+|++ |.+..+|. .|++|.+|++|+|++| .+..+| ..|.+|++|++|+|++
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCC
Confidence 457777646888999 99999999999996 99998884 7999999999999999 566664 5679999999999999
Q ss_pred CCCccccCCCCCCCCCCCccC
Q 038637 696 AGLLEEMPKGFGKLTSLLTLG 716 (962)
Q Consensus 696 ~~~~~~~p~~i~~l~~L~~L~ 716 (962)
|. +..+|..+.....|+.|.
T Consensus 90 N~-l~~~~~~~~~~~~L~~l~ 109 (347)
T 2ifg_A 90 NA-LESLSWKTVQGLSLQELV 109 (347)
T ss_dssp SC-CSCCCSTTTCSCCCCEEE
T ss_pred Cc-cceeCHHHcccCCceEEE
Confidence 98 667776654433376663
No 166
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.30 E-value=4.7e-07 Score=89.66 Aligned_cols=45 Identities=24% Similarity=0.327 Sum_probs=38.2
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
..++||+++++++.+++... ..+.+.|+|++|+|||+||+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRR------TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcC------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999998543 3456789999999999999999874
No 167
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.22 E-value=4.4e-06 Score=91.67 Aligned_cols=196 Identities=13% Similarity=0.087 Sum_probs=110.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccc-eEEEEEeCCCCCHHHHHHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQ-FKAWACVSEDFDVFRVTKSI 279 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~-~~~wv~v~~~~~~~~~~~~i 279 (962)
.+++|++..++.+..++.... .+.+.|+|++|+||||+|+.+++.......+. ....+..+...... .+.+.
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~------~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 109 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSAN------LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGIS-IVREK 109 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTT------CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHH-HHTTH
T ss_pred HHhhCCHHHHHHHHHHHhcCC------CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchH-HHHHH
Confidence 458999999999999985432 23389999999999999999987422111121 12333333322222 22222
Q ss_pred HHHhccCCCCCCccHHHHHHHHHhHhCCceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEEEecChh-hHhh-hCCC
Q 038637 280 LKSIANDQSNNDDDLNLLQEKLKKQLSGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVVTTRNLD-VANL-TRAY 357 (962)
Q Consensus 280 l~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~~-~~~~ 357 (962)
+..+........... .....-.+++-+|++|++..-.......+...+.......++|++|.... +... ....
T Consensus 110 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~ 184 (353)
T 1sxj_D 110 VKNFARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQC 184 (353)
T ss_dssp HHHHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHS
T ss_pred HHHHhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccC
Confidence 222221110000000 00111124567999999865443344444444433334567777775432 1111 1112
Q ss_pred CcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHHHHHH
Q 038637 358 PKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAAKTLG 412 (962)
Q Consensus 358 ~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~ 412 (962)
..+.+.+++.++....+...+-.. +. .-.++....|++.++|.|-.+..+.
T Consensus 185 ~~i~~~~~~~~~~~~~l~~~~~~~-~~---~i~~~~l~~l~~~~~G~~r~~~~~l 235 (353)
T 1sxj_D 185 SKFRFKALDASNAIDRLRFISEQE-NV---KCDDGVLERILDISAGDLRRGITLL 235 (353)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTT-TC---CCCHHHHHHHHHHTSSCHHHHHHHH
T ss_pred ceEEeCCCCHHHHHHHHHHHHHHh-CC---CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 368899999999999998865321 11 1225678889999999997654433
No 168
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.21 E-value=1.4e-05 Score=86.93 Aligned_cols=177 Identities=16% Similarity=0.191 Sum_probs=101.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSIL 280 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 280 (962)
.+++|++..++.+..++..... .......|.|+|++|+|||++|+.+++. ....| +.++++....
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~-~~~~~~~vll~G~~GtGKT~la~~ia~~--~~~~~---~~~~~~~~~~--------- 93 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKK-RNECLDHILFSGPAGLGKTTLANIISYE--MSANI---KTTAAPMIEK--------- 93 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-TTSCCCCEEEECSTTSSHHHHHHHHHHH--TTCCE---EEEEGGGCCS---------
T ss_pred HHhCChHHHHHHHHHHHHHHHh-cCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCCe---EEecchhccc---------
Confidence 5699999999999988864311 0123456899999999999999999763 22222 2233222111
Q ss_pred HHhccCCCCCCccHHHHHHHHHhHhCCceEEEEEecCCCCCccchhhccCCCCC------------------CCCCcEEE
Q 038637 281 KSIANDQSNNDDDLNLLQEKLKKQLSGNKFLLVLDDVWNKNYNYWSILSCPFGA------------------GAPGSKIV 342 (962)
Q Consensus 281 ~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~------------------~~~gs~il 342 (962)
.......+.. ..+..+|+||++..........+...+.. ..++..+|
T Consensus 94 -------------~~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i 158 (338)
T 3pfi_A 94 -------------SGDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLI 158 (338)
T ss_dssp -------------HHHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEE
T ss_pred -------------hhHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEE
Confidence 1111122221 23456788888855433222222221111 11234666
Q ss_pred EEecChhh-Hhh-h-CCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHHHHH
Q 038637 343 VTTRNLDV-ANL-T-RAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAAKTL 411 (962)
Q Consensus 343 vTtR~~~v-~~~-~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~ 411 (962)
.||..... ... . .....+.+.+++.++...++...+-... .....+....|++.+.|.|-.+..+
T Consensus 159 ~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~----~~~~~~~~~~l~~~~~G~~r~l~~~ 226 (338)
T 3pfi_A 159 GATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLN----KTCEEKAALEIAKRSRSTPRIALRL 226 (338)
T ss_dssp EEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT----CEECHHHHHHHHHTTTTCHHHHHHH
T ss_pred EeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcC----CCCCHHHHHHHHHHHCcCHHHHHHH
Confidence 66655321 111 1 1224689999999999999987653211 1233567788999999999554433
No 169
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.19 E-value=1e-06 Score=90.86 Aligned_cols=174 Identities=14% Similarity=0.088 Sum_probs=98.7
Q ss_pred Cccccc---hhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHH
Q 038637 201 AEVYGR---EKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTK 277 (962)
Q Consensus 201 ~~~vGr---~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 277 (962)
.+++|. +..++.+..+.... ..+.+.|+|++|+||||||+.+++. .........|++++...+.
T Consensus 28 ~~~~~~~~~~~~~~~l~~~~~~~------~~~~~ll~G~~G~GKT~la~~l~~~--~~~~~~~~~~~~~~~~~~~----- 94 (242)
T 3bos_A 28 TSYYPAAGNDELIGALKSAASGD------GVQAIYLWGPVKSGRTHLIHAACAR--ANELERRSFYIPLGIHASI----- 94 (242)
T ss_dssp TTSCC--CCHHHHHHHHHHHHTC------SCSEEEEECSTTSSHHHHHHHHHHH--HHHTTCCEEEEEGGGGGGS-----
T ss_pred hhccCCCCCHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEHHHHHHH-----
Confidence 346663 34556666655432 3467899999999999999999874 3322334566665432110
Q ss_pred HHHHHhccCCCCCCccHHHHHHHHHhHhCCceEEEEEecCCCCCccc--hhhccCCCCCC-CCC-cEEEEEecChh----
Q 038637 278 SILKSIANDQSNNDDDLNLLQEKLKKQLSGNKFLLVLDDVWNKNYNY--WSILSCPFGAG-APG-SKIVVTTRNLD---- 349 (962)
Q Consensus 278 ~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~--~~~l~~~l~~~-~~g-s~ilvTtR~~~---- 349 (962)
+ . +.+ +.+ .++.+||+||++...... .+.+...+... ..+ .++|+||+...
T Consensus 95 -----~-------~-------~~~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~ 153 (242)
T 3bos_A 95 -----S-------T-------ALL-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAG 153 (242)
T ss_dssp -----C-------G-------GGG-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTT
T ss_pred -----H-------H-------HHH-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHH
Confidence 0 0 000 011 345689999996533222 22222221110 122 25777776421
Q ss_pred -----hHhhhCCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHHHHHH
Q 038637 350 -----VANLTRAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAAKTLG 412 (962)
Q Consensus 350 -----v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~ 412 (962)
+...+.....+.+.+++.++..+++...+... +. .-..+....|++.++|.+-.+..+.
T Consensus 154 ~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~-~~---~~~~~~~~~l~~~~~g~~r~l~~~l 217 (242)
T 3bos_A 154 FVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMR-GL---QLPEDVGRFLLNRMARDLRTLFDVL 217 (242)
T ss_dssp CCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHT-TC---CCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHc-CC---CCCHHHHHHHHHHccCCHHHHHHHH
Confidence 22222222568999999999999998876321 11 1235677889999999886665443
No 170
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.12 E-value=1.3e-05 Score=89.88 Aligned_cols=179 Identities=19% Similarity=0.147 Sum_probs=101.1
Q ss_pred CccccchhhH---HHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCC-CCHHHHH
Q 038637 201 AEVYGREKEE---EEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSED-FDVFRVT 276 (962)
Q Consensus 201 ~~~vGr~~~~---~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~-~~~~~~~ 276 (962)
.++||.+..+ ..|...+... ....+.|+|++|+||||||+.+++. ....| +.++.. ..... +
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~------~~~~vLL~GppGtGKTtlAr~ia~~--~~~~f-----~~l~a~~~~~~~-i 91 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAG------HLHSMILWGPPGTGKTTLAEVIARY--ANADV-----ERISAVTSGVKE-I 91 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHT------CCCEEEEECSTTSSHHHHHHHHHHH--TTCEE-----EEEETTTCCHHH-H
T ss_pred HHhCCcHHHHhchHHHHHHHHcC------CCcEEEEECCCCCcHHHHHHHHHHH--hCCCe-----EEEEeccCCHHH-H
Confidence 4588988877 6777777543 3467899999999999999999873 22222 222221 11111 1
Q ss_pred HHHHHHhccCCCCCCccHHHHHHHHHhHhCCceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEE-EecChh--h-Hh
Q 038637 277 KSILKSIANDQSNNDDDLNLLQEKLKKQLSGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVV-TTRNLD--V-AN 352 (962)
Q Consensus 277 ~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilv-TtR~~~--v-~~ 352 (962)
+.++... ......+++.+|++|++..-.....+.+...+.. ....+|. ||.+.. + ..
T Consensus 92 r~~~~~a-----------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~a 152 (447)
T 3pvs_A 92 REAIERA-----------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSA 152 (447)
T ss_dssp HHHHHHH-----------------HHHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHH
T ss_pred HHHHHHH-----------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHH
Confidence 1111110 1111246788999999966544444444443432 1233443 555432 1 11
Q ss_pred hhCCCCcccCCCCCHHHHHHHHHHhhcCCCCC---CCCcchHHHHHHHHHhcCCChHHHHHHH
Q 038637 353 LTRAYPKYGLKELSDDDCLRVVIQHSLGATGF---STNQSLKDVGEKIAKKCKGLPLAAKTLG 412 (962)
Q Consensus 353 ~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~---~~~~~~~~~~~~I~~~c~glPLai~~~~ 412 (962)
.......+.+.+++.++...++.+.+-..... ....-..+....|++.++|.+-.+..+-
T Consensus 153 L~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~L 215 (447)
T 3pvs_A 153 LLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTL 215 (447)
T ss_dssp HHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHH
T ss_pred HhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHH
Confidence 12223468899999999999998876431110 1112335677888888999886554433
No 171
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.10 E-value=5.6e-07 Score=98.12 Aligned_cols=134 Identities=18% Similarity=0.178 Sum_probs=84.1
Q ss_pred CCCCCCcCeEEEeecCCCCCCcCcCCCCCCCccEEEEeCCCCCCC-CCCC--CCCCCcCeEeecCCCC-------ceEeC
Q 038637 794 LKPHRDVQELTIRGYGGTKFPIWLGDSSFSKLVNLKFGYCRMCTS-LPSV--GQLPLLKHLKISGMDR-------VKSVG 863 (962)
Q Consensus 794 l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~-l~~l--~~lp~L~~L~L~~~~~-------~~~~~ 863 (962)
+.++|+|++|.|.++....+|. + .+++|+.|.|..|.+... +..+ ..+|+|++|+|+.+.. +..+.
T Consensus 168 l~~~P~L~~L~L~g~~~l~l~~-~---~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNLSIGK-K---PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHTCTTCCEEEEECCBTCBCCS-C---BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred HhcCCCCcEEEEeCCCCceecc-c---cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHH
Confidence 4567899999999875455555 3 478999999998876422 2223 3689999999863211 11111
Q ss_pred ccccCCCCCCCCCCcceeeccccccccccccccCCccccCcCCccceEeEccCCCcccc----CC---CCCCCcceEEEc
Q 038637 864 LEFYGSSCSVPFPSLETLSFSDMREWEEWISCGAGQEVDEVFPKLRKLSLFNCYKLQGT----LP---KRLLLLEKLVIK 936 (962)
Q Consensus 864 ~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~p~L~~L~l~~c~~L~~~----lp---~~l~~L~~L~i~ 936 (962)
..+. ...||+|+.|.|.+|..-..... .......+|+|+.|+|+.| .+.+. ++ .++++|+.|+++
T Consensus 244 ~~l~----~~~~p~Lr~L~L~~~~i~~~~~~---~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~ 315 (362)
T 2ra8_A 244 PLFS----KDRFPNLKWLGIVDAEEQNVVVE---MFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMK 315 (362)
T ss_dssp GGSC----TTTCTTCCEEEEESCTTHHHHHH---HHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECC
T ss_pred HHHh----cCCCCCcCEEeCCCCCCchHHHH---HHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECC
Confidence 1111 12389999999987642211100 0111246899999999876 67641 33 246889999998
Q ss_pred ccc
Q 038637 937 SCH 939 (962)
Q Consensus 937 ~c~ 939 (962)
+|.
T Consensus 316 ~n~ 318 (362)
T 2ra8_A 316 YNY 318 (362)
T ss_dssp SBB
T ss_pred CCc
Confidence 875
No 172
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.09 E-value=1.1e-05 Score=85.38 Aligned_cols=185 Identities=19% Similarity=0.159 Sum_probs=99.1
Q ss_pred CCccccchhhHHHHHHHHhcCCCC-------CCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCH
Q 038637 200 EAEVYGREKEEEEIVELLLNDGLR-------ADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDV 272 (962)
Q Consensus 200 ~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~ 272 (962)
-.+++|.+..+++|.+.+...... +-...+.+.|+|++|+|||+||+.+++. ....| +.+..+.-..
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~--~~~~~---~~v~~~~~~~- 89 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATE--TNATF---IRVVGSELVK- 89 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHH--TTCEE---EEEEGGGGCC-
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEehHHHHH-
Confidence 356899999999998887432000 0023456899999999999999999873 22222 2232221110
Q ss_pred HHHHHHHHHHhccCCCCCCccHHHHHHHHHhHhCCceEEEEEecCCCC-----------Cccchhhc---cCCCC--CCC
Q 038637 273 FRVTKSILKSIANDQSNNDDDLNLLQEKLKKQLSGNKFLLVLDDVWNK-----------NYNYWSIL---SCPFG--AGA 336 (962)
Q Consensus 273 ~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~-----------~~~~~~~l---~~~l~--~~~ 336 (962)
.. .......+...+......++.+|+||++..- .......+ ...+. ...
T Consensus 90 -------------~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 154 (285)
T 3h4m_A 90 -------------KF--IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDAR 154 (285)
T ss_dssp -------------CS--TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSS
T ss_pred -------------hc--cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCC
Confidence 00 1111122222333333456789999999431 10011111 11111 122
Q ss_pred CCcEEEEEecChhhHh-h-h---CCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCC-ChHHHHH
Q 038637 337 PGSKIVVTTRNLDVAN-L-T---RAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKG-LPLAAKT 410 (962)
Q Consensus 337 ~gs~ilvTtR~~~v~~-~-~---~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~g-lPLai~~ 410 (962)
.+..||.||....... . . .-...+.+...+.++..++|...+..... ..... ...|+..+.| .|-.|..
T Consensus 155 ~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~~~----~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 155 GDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNL-AEDVN----LEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp SSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCB-CTTCC----HHHHHHHCTTCCHHHHHH
T ss_pred CCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCC-CCcCC----HHHHHHHcCCCCHHHHHH
Confidence 4567777887543211 1 1 12236889999999999999887643211 11112 4567777777 4434443
No 173
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.07 E-value=2e-05 Score=88.45 Aligned_cols=160 Identities=15% Similarity=0.104 Sum_probs=95.1
Q ss_pred cEEEEEEcCCCchHHHHHHHHhCccchhcccc--eEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCccHHHHHHHHHhHh
Q 038637 228 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFQ--FKAWACVSEDFDVFRVTKSILKSIANDQSNNDDDLNLLQEKLKKQL 305 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~--~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 305 (962)
...+.|+|++|+||||||+.+++. ....+. ..+++++ ..+..++...+.... . ..+...+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~--l~~~~~~~~v~~v~~------~~~~~~~~~~~~~~~------~----~~~~~~~ 191 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLVDSMKEGK------L----NEFREKY 191 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHH--HHHHCCSSCEEEEEH------HHHHHHHHHHHHTTC------H----HHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeH------HHHHHHHHHHHHccc------H----HHHHHHh
Confidence 567899999999999999999983 333332 2344433 334444444443211 1 1233333
Q ss_pred CCceEEEEEecCCCCCc--cchhhccCCCCC-CCCCcEEEEEecCh---------hhHhhhCCCCcccCCCCCHHHHHHH
Q 038637 306 SGNKFLLVLDDVWNKNY--NYWSILSCPFGA-GAPGSKIVVTTRNL---------DVANLTRAYPKYGLKELSDDDCLRV 373 (962)
Q Consensus 306 ~~kr~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~L 373 (962)
..+.-+|++||++.-.. ...+.+...+.. ...|..||+||... .+...+.....+.+.+++.++..++
T Consensus 192 ~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~i 271 (440)
T 2z4s_A 192 RKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSI 271 (440)
T ss_dssp TTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHH
T ss_pred cCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHH
Confidence 43567999999954321 122223222211 13567888888762 2333343446789999999999999
Q ss_pred HHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHHH
Q 038637 374 VIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAAK 409 (962)
Q Consensus 374 f~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~ 409 (962)
+.+.+... +...+ .+....|++.++|.+-.+.
T Consensus 272 L~~~~~~~-~~~i~---~e~l~~la~~~~gn~R~l~ 303 (440)
T 2z4s_A 272 ARKMLEIE-HGELP---EEVLNFVAENVDDNLRRLR 303 (440)
T ss_dssp HHHHHHHH-TCCCC---TTHHHHHHHHCCSCHHHHH
T ss_pred HHHHHHHc-CCCCC---HHHHHHHHHhcCCCHHHHH
Confidence 98876321 11111 2456778889999886443
No 174
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.05 E-value=4.7e-05 Score=82.38 Aligned_cols=172 Identities=15% Similarity=0.064 Sum_probs=100.1
Q ss_pred hhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchh--------------------cccceEEEEEe
Q 038637 207 EKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQ--------------------RHFQFKAWACV 266 (962)
Q Consensus 207 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~--------------------~~F~~~~wv~v 266 (962)
++..+.+...+.... -...+.++|+.|+|||++|+.+.+...-. .|++ ..++..
T Consensus 8 ~~~~~~l~~~i~~~~-----~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~~~ 81 (334)
T 1a5t_A 8 RPDFEKLVASYQAGR-----GHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTLAP 81 (334)
T ss_dssp HHHHHHHHHHHHTTC-----CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEECC
T ss_pred HHHHHHHHHHHHcCC-----cceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEEec
Confidence 445666777775432 34578999999999999999887632100 0122 122221
Q ss_pred CCCCCHHHHHHHHHHHhccCCCCCCccHHHHHHHHHhH----hCCceEEEEEecCCCCCccchhhccCCCCCCCCCcEEE
Q 038637 267 SEDFDVFRVTKSILKSIANDQSNNDDDLNLLQEKLKKQ----LSGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIV 342 (962)
Q Consensus 267 ~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~----l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~il 342 (962)
.. .......+++.+.+... ..+++-++|+|++...+....+.+...+.....++.+|
T Consensus 82 ~~-------------------~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~I 142 (334)
T 1a5t_A 82 EK-------------------GKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFF 142 (334)
T ss_dssp CT-------------------TCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEE
T ss_pred cc-------------------cCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEE
Confidence 10 00111222222221111 13567889999996654444445555454444567777
Q ss_pred EEecChh-hHh-hhCCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHHHHHH
Q 038637 343 VTTRNLD-VAN-LTRAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAAKTLG 412 (962)
Q Consensus 343 vTtR~~~-v~~-~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~~ 412 (962)
++|.+.+ +.. .......+.+.++++++..+.+.+.. . ...+.+..+++.++|.|..+..+.
T Consensus 143 l~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~------~---~~~~~~~~l~~~s~G~~r~a~~~l 205 (334)
T 1a5t_A 143 LATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV------T---MSQDALLAALRLSAGSPGAALALF 205 (334)
T ss_dssp EEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC------C---CCHHHHHHHHHHTTTCHHHHHHTT
T ss_pred EEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc------C---CCHHHHHHHHHHcCCCHHHHHHHh
Confidence 7776542 222 12233568999999999999998764 1 113556789999999997665544
No 175
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.05 E-value=5e-05 Score=83.70 Aligned_cols=195 Identities=12% Similarity=0.106 Sum_probs=104.2
Q ss_pred CccccchhhHHH---HHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEe----CCCCCHH
Q 038637 201 AEVYGREKEEEE---IVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACV----SEDFDVF 273 (962)
Q Consensus 201 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v----~~~~~~~ 273 (962)
+.++|++..++. +.+.+.... ...+.+.|+|++|+|||++|+.+++.. ..... .+.+.. +......
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~----~~~~~vLl~GppGtGKT~la~~la~~l--~~~~~-~~~~~~~~~~~~~~~~~ 116 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGK----IAGRAVLIAGQPGTGKTAIAMGMAQAL--GPDTP-FTAIAGSEIFSLEMSKT 116 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEEESTTSSHHHHHHHHHHHH--CSSCC-EEEEEGGGGSCSSSCHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCC----CCCCEEEEECCCCCCHHHHHHHHHHHh--cccCC-cccccchhhhhcccchh
Confidence 569999988776 444454332 134688999999999999999998742 22111 112222 1223344
Q ss_pred HHHHHHHHHhccCC----------------------------CC-CCccHHHHHHHHHhHh-----CCc----eEEEEEe
Q 038637 274 RVTKSILKSIANDQ----------------------------SN-NDDDLNLLQEKLKKQL-----SGN----KFLLVLD 315 (962)
Q Consensus 274 ~~~~~il~~l~~~~----------------------------~~-~~~~~~~~~~~l~~~l-----~~k----r~LlVlD 315 (962)
+.+...+....... .. ...-...+...+.... .++ +.+|++|
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~ID 196 (368)
T 3uk6_A 117 EALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFID 196 (368)
T ss_dssp HHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEE
T ss_pred HHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEh
Confidence 44444443321100 00 0000122222222111 233 3599999
Q ss_pred cCCCCCccchhhccCCCCCCCCCcEEEEEecC-----------------hhhHhhhCCCCcccCCCCCHHHHHHHHHHhh
Q 038637 316 DVWNKNYNYWSILSCPFGAGAPGSKIVVTTRN-----------------LDVANLTRAYPKYGLKELSDDDCLRVVIQHS 378 (962)
Q Consensus 316 dv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~-----------------~~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a 378 (962)
++..-.......+...+...... .++++|.. ..+...+ ..+.+.+++.++..+++..++
T Consensus 197 Ei~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~---~~i~~~~~~~~e~~~il~~~~ 272 (368)
T 3uk6_A 197 EVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRL---LIVSTTPYSEKDTKQILRIRC 272 (368)
T ss_dssp SGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTE---EEEEECCCCHHHHHHHHHHHH
T ss_pred hccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhc---cEEEecCCCHHHHHHHHHHHH
Confidence 99665444444454444333223 34444431 1222222 347899999999999998776
Q ss_pred cCCCCCCCCcchHHHHHHHHHhcC-CChHHHHH
Q 038637 379 LGATGFSTNQSLKDVGEKIAKKCK-GLPLAAKT 410 (962)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~I~~~c~-glPLai~~ 410 (962)
-... ..-..+....|++.+. |.|-.+..
T Consensus 273 ~~~~----~~~~~~~l~~l~~~~~~G~~r~~~~ 301 (368)
T 3uk6_A 273 EEED----VEMSEDAYTVLTRIGLETSLRYAIQ 301 (368)
T ss_dssp HHTT----CCBCHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHcC----CCCCHHHHHHHHHHhcCCCHHHHHH
Confidence 3211 1223566788888887 77755443
No 176
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.04 E-value=1.1e-05 Score=84.09 Aligned_cols=187 Identities=14% Similarity=0.070 Sum_probs=97.1
Q ss_pred CccccchhhHHHHHHHHhc---CCC---CCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHH
Q 038637 201 AEVYGREKEEEEIVELLLN---DGL---RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFR 274 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~---~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 274 (962)
.+++|.+..++.|.+++.. ... .+....+.|.|+|++|+|||++|+.+++. .... .+.+.++.-.+.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~--~~~~---~~~~~~~~~~~~-- 78 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE--AQVP---FLAMAGAEFVEV-- 78 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH--HTCC---EEEEETTTTSSS--
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCC---EEEechHHHHhh--
Confidence 5689999888777665432 110 00123456789999999999999999873 2222 233444332110
Q ss_pred HHHHHHHHhccCCCCCCccHHHHHHHHHhHhCCceEEEEEecCCCCC------------ccc---hhhccCCCCC--CCC
Q 038637 275 VTKSILKSIANDQSNNDDDLNLLQEKLKKQLSGNKFLLVLDDVWNKN------------YNY---WSILSCPFGA--GAP 337 (962)
Q Consensus 275 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~------------~~~---~~~l~~~l~~--~~~ 337 (962)
. .......+...+.......+.+|++|++..-. ... ...+...+.. ...
T Consensus 79 -------------~-~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 144 (262)
T 2qz4_A 79 -------------I-GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTD 144 (262)
T ss_dssp -------------S-TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTC
T ss_pred -------------c-cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCC
Confidence 0 11111222233333334567899999995420 001 1112111111 123
Q ss_pred CcEEEEEecChhhH-hh-hC---CCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChH-HHHHH
Q 038637 338 GSKIVVTTRNLDVA-NL-TR---AYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPL-AAKTL 411 (962)
Q Consensus 338 gs~ilvTtR~~~v~-~~-~~---~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPL-ai~~~ 411 (962)
+..||.||...... .. .. -...+.+...+.++-.+++...+.... ...........+++.+.|.+- .|..+
T Consensus 145 ~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~---~~~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 145 HVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLK---LTQSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp CEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTT---CCBTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred CEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCC---CCcchhhHHHHHHHHCCCCCHHHHHHH
Confidence 55666677654321 11 11 124567889999999999887653221 111222234778888888754 44333
No 177
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.04 E-value=1.3e-06 Score=95.23 Aligned_cols=129 Identities=22% Similarity=0.155 Sum_probs=81.4
Q ss_pred CCCCccEEEEeCCCCCCCCCCCCCCCCcCeEeecCCCCceEeCccccCCCCCCCCCCcceeecccccc-------ccccc
Q 038637 821 SFSKLVNLKFGYCRMCTSLPSVGQLPLLKHLKISGMDRVKSVGLEFYGSSCSVPFPSLETLSFSDMRE-------WEEWI 893 (962)
Q Consensus 821 ~l~~L~~L~L~~~~~~~~l~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~-------l~~~~ 893 (962)
.+|+|+.|.|++|... .++.+. +++|++|.|..|.. ...+..... ...+|+|+.|+|+...+ +..+.
T Consensus 170 ~~P~L~~L~L~g~~~l-~l~~~~-~~~L~~L~L~~~~l-~~~~l~~l~---~~~lp~L~~L~L~~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 170 AMPLLNNLKIKGTNNL-SIGKKP-RPNLKSLEIISGGL-PDSVVEDIL---GSDLPNLEKLVLYVGVEDYGFDGDMNVFR 243 (362)
T ss_dssp TCTTCCEEEEECCBTC-BCCSCB-CTTCSEEEEECSBC-CHHHHHHHH---HSBCTTCCEEEEECBCGGGTCCSCGGGTG
T ss_pred cCCCCcEEEEeCCCCc-eecccc-CCCCcEEEEecCCC-ChHHHHHHH---HccCCCCcEEEEeccccccccchhHHHHH
Confidence 6789999999988432 345443 89999999987642 211110000 11389999999863211 11110
Q ss_pred cccCCccccCcCCccceEeEccCCCccccCC------CCCCCcceEEEccccCc-------cccCCCCCCcCEEecCCCC
Q 038637 894 SCGAGQEVDEVFPKLRKLSLFNCYKLQGTLP------KRLLLLEKLVIKSCHRL-------LVTIQCLPTLTELHTKLCR 960 (962)
Q Consensus 894 ~~~~~~~~~~~~p~L~~L~l~~c~~L~~~lp------~~l~~L~~L~i~~c~~l-------~~~l~~l~~L~~L~l~~C~ 960 (962)
. ......||+|+.|.+.+| .+.+..+ ..+++|+.|+++.|.-- ...+.++++|+.|+|++|.
T Consensus 244 ~----~l~~~~~p~Lr~L~L~~~-~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 244 P----LFSKDRFPNLKWLGIVDA-EEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp G----GSCTTTCTTCCEEEEESC-TTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred H----HHhcCCCCCcCEEeCCCC-CCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 0 001235899999999998 4432111 35789999999766421 2234568999999999884
No 178
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.03 E-value=1.5e-05 Score=91.79 Aligned_cols=198 Identities=14% Similarity=0.158 Sum_probs=107.0
Q ss_pred CccccchhhHHHHHHHHhcCC-----------CCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCC
Q 038637 201 AEVYGREKEEEEIVELLLNDG-----------LRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSED 269 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~-----------~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~ 269 (962)
.+++|++..++++.+++.... ....+..+.+.|+|++|+||||+|+.+++.. . + ..+.++++..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l--~--~-~~i~in~s~~ 113 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL--G--Y-DILEQNASDV 113 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT--T--C-EEEEECTTSC
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc--C--C-CEEEEeCCCc
Confidence 469999999999999996411 0001234789999999999999999998742 1 2 2334444444
Q ss_pred CCHHHHHHHHHHHhccCCCCCCccHHHHHHHHHhHhCCceEEEEEecCCCCCccc---hhhccCCCCCCCCCcEEEEEec
Q 038637 270 FDVFRVTKSILKSIANDQSNNDDDLNLLQEKLKKQLSGNKFLLVLDDVWNKNYNY---WSILSCPFGAGAPGSKIVVTTR 346 (962)
Q Consensus 270 ~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~---~~~l~~~l~~~~~gs~ilvTtR 346 (962)
.... +....+........ ...-...... .....+++.+||+|++..-.... +..+...+.. .+..||+++.
T Consensus 114 ~~~~-~~~~~i~~~~~~~~-~~~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~ 187 (516)
T 1sxj_A 114 RSKT-LLNAGVKNALDNMS-VVGYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICN 187 (516)
T ss_dssp CCHH-HHHHTGGGGTTBCC-STTTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEES
T ss_pred chHH-HHHHHHHHHhcccc-HHHHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEc
Confidence 3332 33332222211110 0000000000 00123678899999995432211 1222222221 2334555554
Q ss_pred Chh---hHhhhCCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCC-ChHHHHHHHh
Q 038637 347 NLD---VANLTRAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKG-LPLAAKTLGG 413 (962)
Q Consensus 347 ~~~---v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~g-lPLai~~~~~ 413 (962)
... +.........+.+.+++.++..+++...+....- ... .+....|++.++| ++-++..+..
T Consensus 188 ~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~-~i~---~~~l~~la~~s~GdiR~~i~~L~~ 254 (516)
T 1sxj_A 188 ERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKF-KLD---PNVIDRLIQTTRGDIRQVINLLST 254 (516)
T ss_dssp CTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTC-CCC---TTHHHHHHHHTTTCHHHHHHHHTH
T ss_pred CCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCcHHHHHHHHHH
Confidence 422 2222222346889999999999988776532211 111 2456788999999 4455555543
No 179
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.99 E-value=1.7e-05 Score=86.96 Aligned_cols=195 Identities=11% Similarity=0.075 Sum_probs=102.6
Q ss_pred CccccchhhHHHHHHHH-hcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCcc-c-hhc--ccce---------------
Q 038637 201 AEVYGREKEEEEIVELL-LNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDD-R-VQR--HFQF--------------- 260 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L-~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~-~-~~~--~F~~--------------- 260 (962)
.+++|.+..++.+..++ ... ....+.|+|+.|+||||+|+.++... . ..+ .++.
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~------~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~ 87 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPR------DLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNV 87 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTT------CCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CC
T ss_pred HHhcCCHHHHHHHHHHHhhCC------CCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeee
Confidence 45899999888887777 322 22238999999999999999887621 0 000 0110
Q ss_pred -----EEEEEeCCCC-CHHHHHHHHHHHhccCCCCCCccHHHHHHHHHhHhCCceEEEEEecCCCCCccchhhccCCCCC
Q 038637 261 -----KAWACVSEDF-DVFRVTKSILKSIANDQSNNDDDLNLLQEKLKKQLSGNKFLLVLDDVWNKNYNYWSILSCPFGA 334 (962)
Q Consensus 261 -----~~wv~v~~~~-~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~ 334 (962)
.+.+..+... ......++++..+..... ..... .+. .+.+++-++|+|++..-+......+...+..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----~~~~~-~ls-~l~~~~~vlilDE~~~L~~~~~~~L~~~le~ 160 (354)
T 1sxj_E 88 VSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQ-----VDFQD-SKD-GLAHRYKCVIINEANSLTKDAQAALRRTMEK 160 (354)
T ss_dssp EECSSEEEECCC----CCHHHHHHHHHHHTTTTC-------------------CCEEEEEECTTSSCHHHHHHHHHHHHH
T ss_pred ecccceEEecHhhcCCcchHHHHHHHHHHHHhcc-----ccccc-ccc-ccCCCCeEEEEeCccccCHHHHHHHHHHHHh
Confidence 0111111000 000012222222221110 00000 000 0233667999999966544444444444433
Q ss_pred CCCCcEEEEEecCh-hhHh-hhCCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcch-HHHHHHHHHhcCCChHHHHHH
Q 038637 335 GAPGSKIVVTTRNL-DVAN-LTRAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSL-KDVGEKIAKKCKGLPLAAKTL 411 (962)
Q Consensus 335 ~~~gs~ilvTtR~~-~v~~-~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~-~~~~~~I~~~c~glPLai~~~ 411 (962)
...+..+|++|... .+.. .......+++.+++.++..+.+...+... +. .-. ++....|++.++|.+-.+..+
T Consensus 161 ~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~-~~---~~~~~~~l~~i~~~~~G~~r~a~~~ 236 (354)
T 1sxj_E 161 YSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNE-RI---QLETKDILKRIAQASNGNLRVSLLM 236 (354)
T ss_dssp STTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHH-TC---EECCSHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHc-CC---CCCcHHHHHHHHHHcCCCHHHHHHH
Confidence 33567777777653 2211 11223568999999999999998765321 11 111 356788999999998765544
Q ss_pred H
Q 038637 412 G 412 (962)
Q Consensus 412 ~ 412 (962)
.
T Consensus 237 l 237 (354)
T 1sxj_E 237 L 237 (354)
T ss_dssp H
T ss_pred H
Confidence 4
No 180
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.99 E-value=2.8e-06 Score=81.01 Aligned_cols=92 Identities=10% Similarity=0.033 Sum_probs=49.5
Q ss_pred CCccEEEEeCCCCCC-CCCCCCCCCCcCeEeecCCCCceEeCccccCCCCCCCCCCcceeeccccccccccccccCCccc
Q 038637 823 SKLVNLKFGYCRMCT-SLPSVGQLPLLKHLKISGMDRVKSVGLEFYGSSCSVPFPSLETLSFSDMREWEEWISCGAGQEV 901 (962)
Q Consensus 823 ~~L~~L~L~~~~~~~-~l~~l~~lp~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~ 901 (962)
.+|+.|++++|.+.+ .+..+..+++|++|+|++|..++..+....... ....++|+.|+|++|+++++-.. ..
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~-~~~~~~L~~L~Ls~C~~ITD~Gl-----~~ 134 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQL-ENLQKSMLEMEIISCGNVTDKGI-----IA 134 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTC-HHHHHHCCEEEEESCTTCCHHHH-----HH
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhc-ccccCCCCEEEcCCCCcCCHHHH-----HH
Confidence 357777777777542 344556777777777777766554433322110 00023566666666655544322 11
Q ss_pred cCcCCccceEeEccCCCcc
Q 038637 902 DEVFPKLRKLSLFNCYKLQ 920 (962)
Q Consensus 902 ~~~~p~L~~L~l~~c~~L~ 920 (962)
...+|+|+.|+|++|++++
T Consensus 135 L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 135 LHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp GGGCTTCCEEEEESCTTCC
T ss_pred HhcCCCCCEEECCCCCCCC
Confidence 2235666666666666555
No 181
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.97 E-value=2.5e-05 Score=84.43 Aligned_cols=174 Identities=17% Similarity=0.150 Sum_probs=99.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSIL 280 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 280 (962)
.+++|.+..++.+.+++.... ...++.+.|++|+|||++|+.+++. .. ...+.++.+.. . ...++..+
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~-----~~~~~L~~G~~G~GKT~la~~la~~--l~---~~~~~i~~~~~-~-~~~i~~~~ 93 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGK-----IPHIILHSPSPGTGKTTVAKALCHD--VN---ADMMFVNGSDC-K-IDFVRGPL 93 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTC-----CCSEEEECSSTTSSHHHHHHHHHHH--TT---EEEEEEETTTC-C-HHHHHTHH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-----CCeEEEeeCcCCCCHHHHHHHHHHH--hC---CCEEEEccccc-C-HHHHHHHH
Confidence 568999999999999997442 3457788899999999999999873 22 12334443332 2 22222222
Q ss_pred HHhccCCCCCCccHHHHHHHHHhHhCCceEEEEEecCCCCC-ccchhhccCCCCCCCCCcEEEEEecChh-----hHhhh
Q 038637 281 KSIANDQSNNDDDLNLLQEKLKKQLSGNKFLLVLDDVWNKN-YNYWSILSCPFGAGAPGSKIVVTTRNLD-----VANLT 354 (962)
Q Consensus 281 ~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-~~~~~~l~~~l~~~~~gs~ilvTtR~~~-----v~~~~ 354 (962)
..+..... ..+++-++|+|++..-. ....+.+...+.....+.++|+||.... +...
T Consensus 94 ~~~~~~~~----------------~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR- 156 (324)
T 3u61_B 94 TNFASAAS----------------FDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSR- 156 (324)
T ss_dssp HHHHHBCC----------------CSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHH-
T ss_pred HHHHhhcc----------------cCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhh-
Confidence 22111110 12478899999996544 3334444433332234567888887643 2222
Q ss_pred CCCCcccCCCCCHHHHHHHH-------HHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHH
Q 038637 355 RAYPKYGLKELSDDDCLRVV-------IQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAA 408 (962)
Q Consensus 355 ~~~~~~~l~~L~~~~~~~Lf-------~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai 408 (962)
...+.+++++.++-.+++ ...+.. .+...+ ..+....|++.++|.+-.+
T Consensus 157 --~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~-~~~~~~--~~~~~~~l~~~~~gd~R~a 212 (324)
T 3u61_B 157 --CRVITFGQPTDEDKIEMMKQMIRRLTEICKH-EGIAIA--DMKVVAALVKKNFPDFRKT 212 (324)
T ss_dssp --SEEEECCCCCHHHHHHHHHHHHHHHHHHHHH-HTCCBS--CHHHHHHHHHHTCSCTTHH
T ss_pred --CcEEEeCCCCHHHHHHHHHHHHHHHHHHHHH-cCCCCC--cHHHHHHHHHhCCCCHHHH
Confidence 246889999988743332 222211 111111 1266777888888876543
No 182
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.88 E-value=0.00015 Score=75.84 Aligned_cols=196 Identities=14% Similarity=0.108 Sum_probs=101.0
Q ss_pred ccccchhhHHHHHH-------HHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHH
Q 038637 202 EVYGREKEEEEIVE-------LLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFR 274 (962)
Q Consensus 202 ~~vGr~~~~~~l~~-------~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 274 (962)
.++|.....+++.. .+.... ....+.+.|+|++|+|||+||+.+++. ....| +.+..+..
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~---~~~~~~vLl~G~~GtGKT~la~~ia~~--~~~~~---~~i~~~~~----- 100 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSD---RTPLVSVLLEGPPHSGKTALAAKIAEE--SNFPF---IKICSPDK----- 100 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCS---SCSEEEEEEECSTTSSHHHHHHHHHHH--HTCSE---EEEECGGG-----
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccC---CCCCeEEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEeCHHH-----
Confidence 46777777666665 332211 235678999999999999999999883 22221 22222211
Q ss_pred HHHHHHHHhccCCCCCCccHHHHHHHHHhHhCCceEEEEEecCCCC----------CccchhhccCCCC---CCCCCcEE
Q 038637 275 VTKSILKSIANDQSNNDDDLNLLQEKLKKQLSGNKFLLVLDDVWNK----------NYNYWSILSCPFG---AGAPGSKI 341 (962)
Q Consensus 275 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~----------~~~~~~~l~~~l~---~~~~gs~i 341 (962)
+.+.. .......+...+......+..+|+||++..- .......+...+. .......|
T Consensus 101 --------~~g~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~i 170 (272)
T 1d2n_A 101 --------MIGFS--ETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLI 170 (272)
T ss_dssp --------CTTCC--HHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred --------hcCCc--hHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEE
Confidence 10000 0011122333334444567899999998431 1011122222222 12233456
Q ss_pred EEEecChhhHhh---hCC-CCcccCCCCCH-HHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCC------ChHHHHH
Q 038637 342 VVTTRNLDVANL---TRA-YPKYGLKELSD-DDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKG------LPLAAKT 410 (962)
Q Consensus 342 lvTtR~~~v~~~---~~~-~~~~~l~~L~~-~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~g------lPLai~~ 410 (962)
|.||........ ... ...+.+++++. ++...++.... .. ..+....|++.+.| .+-++.+
T Consensus 171 i~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~------~~---~~~~~~~l~~~~~g~~~~g~ir~l~~~ 241 (272)
T 1d2n_A 171 IGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG------NF---KDKERTTIAQQVKGKKVWIGIKKLLML 241 (272)
T ss_dssp EEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT------CS---CHHHHHHHHHHHTTSEEEECHHHHHHH
T ss_pred EEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC------CC---CHHHHHHHHHHhcCCCccccHHHHHHH
Confidence 777776643332 111 34578888988 66666665531 11 14557788888887 3444444
Q ss_pred HHhhhcCCCChhHHHHHHhh
Q 038637 411 LGGLLRGKDDLTDWEFVLNT 430 (962)
Q Consensus 411 ~~~~L~~~~~~~~w~~~~~~ 430 (962)
+-.... ......+..++..
T Consensus 242 l~~a~~-~~~~~~~~~~~~~ 260 (272)
T 1d2n_A 242 IEMSLQ-MDPEYRVRKFLAL 260 (272)
T ss_dssp HHHHTT-SCGGGHHHHHHHH
T ss_pred HHHHhh-hchHHHHHHHHHH
Confidence 433322 2233455555543
No 183
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.87 E-value=4.8e-06 Score=79.34 Aligned_cols=86 Identities=9% Similarity=0.116 Sum_probs=62.5
Q ss_pred CCcCeEeecCCCCceEeCccccCCCCCCCCCCcceeeccccccccccccccCCccccCc----CCccceEeEccCCCccc
Q 038637 846 PLLKHLKISGMDRVKSVGLEFYGSSCSVPFPSLETLSFSDMREWEEWISCGAGQEVDEV----FPKLRKLSLFNCYKLQG 921 (962)
Q Consensus 846 p~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~----~p~L~~L~l~~c~~L~~ 921 (962)
.+|+.|++++|. +...+..... .+++|+.|+|++|..+++... ..... .++|+.|+|++|+++++
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L~-----~~~~L~~L~L~~C~~ItD~gL-----~~L~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHME-----GLQYVEKIRLCKCHYIEDGCL-----ERLSQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGGT-----TCSCCCEEEEESCTTCCHHHH-----HHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred ceEeEEeCcCCC-ccHHHHHHhc-----CCCCCCEEEeCCCCccCHHHH-----HHHHhcccccCCCCEEEcCCCCcCCH
Confidence 479999999986 6655554433 389999999999988776533 11122 35899999999988864
Q ss_pred cC---CCCCCCcceEEEccccCcc
Q 038637 922 TL---PKRLLLLEKLVIKSCHRLL 942 (962)
Q Consensus 922 ~l---p~~l~~L~~L~i~~c~~l~ 942 (962)
.- -..+++|+.|+|++|+.+.
T Consensus 130 ~Gl~~L~~~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 130 KGIIALHHFRNLKYLFLSDLPGVK 153 (176)
T ss_dssp HHHHHGGGCTTCCEEEEESCTTCC
T ss_pred HHHHHHhcCCCCCEEECCCCCCCC
Confidence 11 1357899999999998774
No 184
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.86 E-value=2.8e-05 Score=83.39 Aligned_cols=161 Identities=16% Similarity=0.102 Sum_probs=86.6
Q ss_pred ccccchhhHHHHHHHHhcCC---------CCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCH
Q 038637 202 EVYGREKEEEEIVELLLNDG---------LRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDV 272 (962)
Q Consensus 202 ~~vGr~~~~~~l~~~L~~~~---------~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~ 272 (962)
.++|.+..++.|.+++.... -........+.|+|++|+|||++|+.+++...........-++.++..
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 47788888888876653210 001224557899999999999999988874322121111123333211
Q ss_pred HHHHHHHHHHhccCCCCCCccHHHHHHHHHhHhCCceEEEEEecCCCC---------CccchhhccCCCCCCCCCcEEEE
Q 038637 273 FRVTKSILKSIANDQSNNDDDLNLLQEKLKKQLSGNKFLLVLDDVWNK---------NYNYWSILSCPFGAGAPGSKIVV 343 (962)
Q Consensus 273 ~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~---------~~~~~~~l~~~l~~~~~gs~ilv 343 (962)
.+.... ...........+... +.-+|++|++..- .......+...+.....+..||.
T Consensus 109 ---------~l~~~~--~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~ 174 (309)
T 3syl_A 109 ---------DLVGQY--IGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVIL 174 (309)
T ss_dssp ---------GTCCSS--TTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEE
T ss_pred ---------Hhhhhc--ccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEE
Confidence 111110 111112222223222 2349999999532 22233444444444445667888
Q ss_pred EecChhhHhhh--------CCCCcccCCCCCHHHHHHHHHHhhc
Q 038637 344 TTRNLDVANLT--------RAYPKYGLKELSDDDCLRVVIQHSL 379 (962)
Q Consensus 344 TtR~~~v~~~~--------~~~~~~~l~~L~~~~~~~Lf~~~a~ 379 (962)
||......... .....+.+++++.++..+++...+-
T Consensus 175 ~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~ 218 (309)
T 3syl_A 175 AGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLD 218 (309)
T ss_dssp EECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHH
T ss_pred eCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHH
Confidence 87643221110 1125688999999999999877653
No 185
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.83 E-value=1.4e-05 Score=78.37 Aligned_cols=45 Identities=24% Similarity=0.287 Sum_probs=37.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
..++||+.+++.+.+.+... ..+.+.|+|++|+|||+||+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~------~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRR------TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCC------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999543 3456789999999999999999874
No 186
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.81 E-value=0.00074 Score=74.93 Aligned_cols=282 Identities=11% Similarity=0.042 Sum_probs=155.7
Q ss_pred ccccCCCCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCccccc-ccccCCCcCCeEeccCCCCccc-c
Q 038637 578 ESVCDVEHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFNLP-NEIGNLKHLRCLNLSRTRIQIL-P 655 (962)
Q Consensus 578 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~lp-~~i~~L~~Lr~L~Ls~~~i~~l-p 655 (962)
.+|.+|.+|+++.+.+.- ..+....|..+..|+.+.+..+ +..+. ..|.++..+...... .+..+ .
T Consensus 88 ~aF~~c~~L~~i~lp~~l--------~~I~~~aF~~c~~L~~i~~p~~--l~~i~~~aF~~~~~~~~~~~~--~~~~i~~ 155 (394)
T 4fs7_A 88 FAFENCSKLEIINIPDSV--------KMIGRCTFSGCYALKSILLPLM--LKSIGVEAFKGCDFKEITIPE--GVTVIGD 155 (394)
T ss_dssp TTTTTCTTCCEECCCTTC--------CEECTTTTTTCTTCCCCCCCTT--CCEECTTTTTTCCCSEEECCT--TCCEECT
T ss_pred hHhhCCCCCcEEEeCCCc--------eEccchhhcccccchhhcccCc--eeeecceeeecccccccccCc--cccccch
Confidence 457789999999875431 3355566888888988877654 44443 445555443333322 22223 2
Q ss_pred ccccccccCcEEeeCCCccccccc-hhcccCCCccEEecCCCCCccccC-CCCCCCCCCCccCCeEeCCCCCCCcccccC
Q 038637 656 ESINSLYNLHTILLENCWELKKLC-KDMGNLTKLRHLRNSDAGLLEEMP-KGFGKLTSLLTLGRFVVGKDSGSGLRELKS 733 (962)
Q Consensus 656 ~~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~L~~~~~~~~~~~~~~~l~~ 733 (962)
..+.++.+|+.+.+..+ +..++ ..+..+.+|+.+.+..+ +..++ ..+..+..|+.+.........+... -.
T Consensus 156 ~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~---~~ 228 (394)
T 4fs7_A 156 EAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNSLYYLGDFA---LS 228 (394)
T ss_dssp TTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTTCCEECTTT---TT
T ss_pred hhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCCceEeehhh---cc
Confidence 35778888999988764 33343 34677888888888665 33333 3356666666653211100000011 11
Q ss_pred cccCCCeEEEeccCCCCChhhhhhhcCcCCcCCCceEEeccCCCCCCccchhhHHhhhccCCCCCCcCeEEEeecCCCCC
Q 038637 734 LTHLQGTLRISKLENVEDVGDACEAQLNNKVNLRTLLLDWSARDVQNLDQCEFETRVLSMLKPHRDVQELTIRGYGGTKF 813 (962)
Q Consensus 734 L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 813 (962)
...|+ .+.+.. .+... ....+..+..|+.+.+..+... .....+..+..++.+.+.... +
T Consensus 229 ~~~l~-~i~ip~--~~~~i---~~~~f~~~~~l~~~~~~~~~~~-----------i~~~~F~~~~~l~~~~~~~~~---i 288 (394)
T 4fs7_A 229 KTGVK-NIIIPD--SFTEL---GKSVFYGCTDLESISIQNNKLR-----------IGGSLFYNCSGLKKVIYGSVI---V 288 (394)
T ss_dssp TCCCC-EEEECT--TCCEE---CSSTTTTCSSCCEEEECCTTCE-----------ECSCTTTTCTTCCEEEECSSE---E
T ss_pred cCCCc-eEEECC--Cceec---ccccccccccceeEEcCCCcce-----------eeccccccccccceeccCcee---e
Confidence 12333 343321 11111 1123456677777776543311 112334556677776665432 2
Q ss_pred CcCcCCCCCCCccEEEEeCCCCCCCCC--CCCCCCCcCeEeecCCCCceEeCccccCCCCCCCCCCcceeeccccccccc
Q 038637 814 PIWLGDSSFSKLVNLKFGYCRMCTSLP--SVGQLPLLKHLKISGMDRVKSVGLEFYGSSCSVPFPSLETLSFSDMREWEE 891 (962)
Q Consensus 814 p~~~~~~~l~~L~~L~L~~~~~~~~l~--~l~~lp~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~ 891 (962)
+.... ..+.+|+.+.+.++ ...++ .+..+.+|+.+.|.. .++.++..-+. .+.+|+.+.|.. +++.
T Consensus 289 ~~~~F-~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~-----~c~~L~~i~lp~--~l~~ 356 (394)
T 4fs7_A 289 PEKTF-YGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFR-----GCTSLSNINFPL--SLRK 356 (394)
T ss_dssp CTTTT-TTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCT--TCCEECTTTTT-----TCTTCCEECCCT--TCCE
T ss_pred ccccc-cccccccccccccc--cceechhhhcCCCCCCEEEeCC--cccEEhHHhcc-----CCCCCCEEEECc--cccE
Confidence 32222 25778888888654 23333 577888999998863 46777543222 278888888864 2444
Q ss_pred cccccCCccccCcCCccceEeEcc
Q 038637 892 WISCGAGQEVDEVFPKLRKLSLFN 915 (962)
Q Consensus 892 ~~~~~~~~~~~~~~p~L~~L~l~~ 915 (962)
+.. .....+++|+.+.+..
T Consensus 357 I~~-----~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 357 IGA-----NAFQGCINLKKVELPK 375 (394)
T ss_dssp ECT-----TTBTTCTTCCEEEEEG
T ss_pred ehH-----HHhhCCCCCCEEEECC
Confidence 422 1234577888888865
No 187
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.80 E-value=9.7e-05 Score=80.24 Aligned_cols=182 Identities=13% Similarity=0.144 Sum_probs=100.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccc-eEEEEEeCCCCCHHHHHHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQ-FKAWACVSEDFDVFRVTKSI 279 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~-~~~wv~v~~~~~~~~~~~~i 279 (962)
.+++|.+..++.|..++... +.+.+.++|++|+||||+|+.++.... ...+. ...-++.+....... .+++
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g------~~~~~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~~~~~~-ir~~ 96 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEG------KLPHLLFYGPPGTGKTSTIVALAREIY-GKNYSNMVLELNASDDRGIDV-VRNQ 96 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTT------CCCCEEEECSSSSSHHHHHHHHHHHHH-TTSHHHHEEEECTTSCCSHHH-HHTH
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHc-CCCccceEEEEcCcccccHHH-HHHH
Confidence 34789998899888888543 233489999999999999999987321 11111 111222222111111 1111
Q ss_pred HHHhccCCCCCCccHHHHHHHHHhHhCCceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEEEecChh-hHh-hhCCC
Q 038637 280 LKSIANDQSNNDDDLNLLQEKLKKQLSGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVVTTRNLD-VAN-LTRAY 357 (962)
Q Consensus 280 l~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~-v~~-~~~~~ 357 (962)
+..+.... ....+.+-++|+|++..-.....+.+...+.......++|++|.... +.. .....
T Consensus 97 i~~~~~~~---------------~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~ 161 (340)
T 1sxj_C 97 IKDFASTR---------------QIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQC 161 (340)
T ss_dssp HHHHHHBC---------------CSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHHHHhhc---------------ccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhc
Confidence 11111000 00123467899999855443334444433333334566777665432 111 11122
Q ss_pred CcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHHH
Q 038637 358 PKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAAK 409 (962)
Q Consensus 358 ~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~ 409 (962)
..+.+.+++.++..+.+...+-.. +. .-..+..+.|++.++|.+--+.
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~~~~~-~~---~i~~~~~~~i~~~s~G~~r~~~ 209 (340)
T 1sxj_C 162 TRFRFQPLPQEAIERRIANVLVHE-KL---KLSPNAEKALIELSNGDMRRVL 209 (340)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTT-TC---CBCHHHHHHHHHHHTTCHHHHH
T ss_pred eeEeccCCCHHHHHHHHHHHHHHc-CC---CCCHHHHHHHHHHcCCCHHHHH
Confidence 467899999999888887655221 11 1224567889999999887443
No 188
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.79 E-value=0.00019 Score=77.18 Aligned_cols=185 Identities=14% Similarity=0.040 Sum_probs=100.8
Q ss_pred CccccchhhHHHHHHHHhcC-------CCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHH
Q 038637 201 AEVYGREKEEEEIVELLLND-------GLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVF 273 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~-------~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 273 (962)
.+++|.+..++.|.+++... .. .....+-|.++|++|+|||+||+++++. ....| +.++++
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~-~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~~---~~v~~~------ 85 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKG-NRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTF---FSVSSS------ 85 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCT-TCCCCCEEEEECSSSSCHHHHHHHHHHH--HTCEE---EEEEHH------
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhc-CCCCCCeEEEECCCCCcHHHHHHHHHHH--HCCCE---EEEchH------
Confidence 56899999999998877310 11 1123467899999999999999999873 33222 222221
Q ss_pred HHHHHHHHHhccCCCCCCccHHHHHH-HHHhHhCCceEEEEEecCCCCCc-----------cchhhccCCC---CCCCCC
Q 038637 274 RVTKSILKSIANDQSNNDDDLNLLQE-KLKKQLSGNKFLLVLDDVWNKNY-----------NYWSILSCPF---GAGAPG 338 (962)
Q Consensus 274 ~~~~~il~~l~~~~~~~~~~~~~~~~-~l~~~l~~kr~LlVlDdv~~~~~-----------~~~~~l~~~l---~~~~~g 338 (962)
.+ ... .....+.... .+...-..++.+|+||++..-.. .....+...+ .....+
T Consensus 86 ~l----~~~-------~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 154 (322)
T 3eie_A 86 DL----VSK-------WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG 154 (322)
T ss_dssp HH----HTT-------TGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCC
T ss_pred HH----hhc-------ccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCc
Confidence 11 111 1111222222 22222245678999999943211 0012222111 122345
Q ss_pred cEEEEEecChhhH-hh--hCCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCC-hHHHHHHH
Q 038637 339 SKIVVTTRNLDVA-NL--TRAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGL-PLAAKTLG 412 (962)
Q Consensus 339 s~ilvTtR~~~v~-~~--~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~gl-PLai~~~~ 412 (962)
..||.||...... .. -.-...+.+...+.++-.++|..++.... ..........|++.+.|. +-.|..+.
T Consensus 155 v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~----~~~~~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 155 VLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTP----CVLTKEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp EEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCC----CCCCHHHHHHHHHTTTTCCHHHHHHHH
T ss_pred eEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCC----CCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 5666677653221 11 01224567888899999999988763221 111234567888898874 44454444
No 189
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.77 E-value=0.00014 Score=78.31 Aligned_cols=155 Identities=14% Similarity=0.097 Sum_probs=86.1
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCccHHHHHHHHHhHhC
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSIANDQSNNDDDLNLLQEKLKKQLS 306 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 306 (962)
....+.|+|++|+||||||+.+++.. ...-...+++++ ..+...+...+... ........ +.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~--~~~~~~~~~i~~------~~~~~~~~~~~~~~------~~~~~~~~----~~ 97 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEA--KKRGYRVIYSSA------DDFAQAMVEHLKKG------TINEFRNM----YK 97 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHH--HHTTCCEEEEEH------HHHHHHHHHHHHHT------CHHHHHHH----HH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH--HHCCCEEEEEEH------HHHHHHHHHHHHcC------cHHHHHHH----hc
Confidence 34578999999999999999998742 111112344543 33344444433221 11222222 22
Q ss_pred CceEEEEEecCCCCCc--cchhhccCCCCC-CCCCcEEEEEecCh---------hhHhhhCCCCcccCCCCCHHHHHHHH
Q 038637 307 GNKFLLVLDDVWNKNY--NYWSILSCPFGA-GAPGSKIVVTTRNL---------DVANLTRAYPKYGLKELSDDDCLRVV 374 (962)
Q Consensus 307 ~kr~LlVlDdv~~~~~--~~~~~l~~~l~~-~~~gs~ilvTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf 374 (962)
+.-+|++||+..-.. ...+.+...+.. ...+..||+||... .+...+.....+++.+ +.++..+++
T Consensus 98 -~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il 175 (324)
T 1l8q_A 98 -SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKII 175 (324)
T ss_dssp -TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHH
T ss_pred -CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHH
Confidence 356999999954321 112222222211 12456788887642 1222233335688999 999999999
Q ss_pred HHhhcCCCCCCCCcchHHHHHHHHHhcCCChH
Q 038637 375 IQHSLGATGFSTNQSLKDVGEKIAKKCKGLPL 406 (962)
Q Consensus 375 ~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPL 406 (962)
...+.... . .--.+....|++.+ |.+-
T Consensus 176 ~~~~~~~~-~---~l~~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 176 KEKLKEFN-L---ELRKEVIDYLLENT-KNVR 202 (324)
T ss_dssp HHHHHHTT-C---CCCHHHHHHHHHHC-SSHH
T ss_pred HHHHHhcC-C---CCCHHHHHHHHHhC-CCHH
Confidence 88764221 1 12246677788888 7664
No 190
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.76 E-value=2.2e-05 Score=73.42 Aligned_cols=114 Identities=15% Similarity=0.008 Sum_probs=65.5
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHH
Q 038637 202 EVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILK 281 (962)
Q Consensus 202 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~ 281 (962)
+++|+...+.++.+.+..... ...-|.|+|++|+|||++|+.+++.... ..... + ++++...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~----~~~~vll~G~~GtGKt~lA~~i~~~~~~-~~~~~-v-~~~~~~~~~--------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE----TDIAVWLYGAPGTGRMTGARYLHQFGRN-AQGEF-V-YRELTPDNA--------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT----CCSCEEEESSTTSSHHHHHHHHHHSSTT-TTSCC-E-EEECCTTTS---------
T ss_pred CceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCCHHHHHHHHHHhCCc-cCCCE-E-EECCCCCcc---------
Confidence 478999999999988854321 2234689999999999999999874211 11122 2 555543221
Q ss_pred HhccCCCCCCccHHHHHHHHHhHhCCceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEEEecC
Q 038637 282 SIANDQSNNDDDLNLLQEKLKKQLSGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVVTTRN 347 (962)
Q Consensus 282 ~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~ 347 (962)
.... ..+... +.-.|++|++..-.......+...+.......+||.||..
T Consensus 66 ----------~~~~---~~~~~a---~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 66 ----------PQLN---DFIALA---QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp ----------SCHH---HHHHHH---TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred ----------hhhh---cHHHHc---CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 0111 111111 2246899999665544444454444333345677777764
No 191
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.75 E-value=0.0022 Score=71.01 Aligned_cols=107 Identities=7% Similarity=0.084 Sum_probs=68.8
Q ss_pred cccCCC-CeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCc--Cccccc-ccccCCCcCCeEeccCCCCccc
Q 038637 579 SVCDVE-HLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYC--NIFNLP-NEIGNLKHLRCLNLSRTRIQIL 654 (962)
Q Consensus 579 ~~~~~~-~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~--~~~~lp-~~i~~L~~Lr~L~Ls~~~i~~l 654 (962)
+|.+++ .|+++.+.+. ...+....|.+|.+|+.+.+..+. .+..++ ..|.++..|+.+.+..+ ++.+
T Consensus 58 aF~~~~~~L~sI~iP~s--------vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I 128 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDT--------VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEI 128 (394)
T ss_dssp TTTTCCSCCCEEEECTT--------CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEE
T ss_pred hccCCCCcCEEEEECCC--------eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-ccee
Confidence 455664 4777766543 134556678888999998887651 355554 45777888888777654 5555
Q ss_pred cc-cccccccCcEEeeCCCccccccc-hhcccCCCccEEecCCC
Q 038637 655 PE-SINSLYNLHTILLENCWELKKLC-KDMGNLTKLRHLRNSDA 696 (962)
Q Consensus 655 p~-~i~~L~~L~~L~L~~~~~l~~lp-~~i~~L~~L~~L~l~~~ 696 (962)
+. .+..+.+|+.+.+..+ +..++ ..+..+.+|+.+.+..+
T Consensus 129 ~~~aF~~c~~L~~i~lp~~--~~~I~~~~F~~c~~L~~i~~~~~ 170 (394)
T 4gt6_A 129 DSEAFHHCEELDTVTIPEG--VTSVADGMFSYCYSLHTVTLPDS 170 (394)
T ss_dssp CTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT
T ss_pred hhhhhhhhcccccccccce--eeeecccceecccccccccccce
Confidence 44 4667888888888653 33333 34567777887777553
No 192
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.73 E-value=3.5e-06 Score=92.58 Aligned_cols=81 Identities=17% Similarity=0.212 Sum_probs=44.0
Q ss_pred CcccEEEeCCCcCccccc-ccc----c-CCCcCCeEeccCCCCcc--ccccccccccCcEEeeCCCcccccc-----chh
Q 038637 615 PRLRVFSLCGYCNIFNLP-NEI----G-NLKHLRCLNLSRTRIQI--LPESINSLYNLHTILLENCWELKKL-----CKD 681 (962)
Q Consensus 615 ~~Lr~L~L~~~~~~~~lp-~~i----~-~L~~Lr~L~Ls~~~i~~--lp~~i~~L~~L~~L~L~~~~~l~~l-----p~~ 681 (962)
+.|+.|+|++| .+.... ..+ . ...+|++|+|++|.+.. +......+.+|++|+|++| .+... ...
T Consensus 72 ~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~ 149 (372)
T 3un9_A 72 SSLRQLNLAGV-RMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDL 149 (372)
T ss_dssp TTCCEEECTTS-CCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHH
T ss_pred hhCCEEEecCC-CCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHH
Confidence 45777777777 444321 122 2 22577777777777652 2222334567777777777 33221 111
Q ss_pred c-ccCCCccEEecCCCC
Q 038637 682 M-GNLTKLRHLRNSDAG 697 (962)
Q Consensus 682 i-~~L~~L~~L~l~~~~ 697 (962)
+ ...++|++|++++|.
T Consensus 150 L~~~~~~L~~L~Ls~n~ 166 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNP 166 (372)
T ss_dssp HHSTTCCCCEEECCSSC
T ss_pred HHhcCCccceeeCCCCC
Confidence 2 234667777776665
No 193
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.71 E-value=0.00054 Score=73.39 Aligned_cols=188 Identities=13% Similarity=0.063 Sum_probs=99.8
Q ss_pred CccccchhhHHHHHHHHhcC---C---CCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHH
Q 038637 201 AEVYGREKEEEEIVELLLND---G---LRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFR 274 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~---~---~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 274 (962)
++++|.+..++.|.+.+... . .......+.|.++|++|+|||+||+++++... ... .+.++.+.-.+
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-~~~---~~~i~~~~l~~--- 84 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-NST---FFSISSSDLVS--- 84 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-SCE---EEEEECCSSCC---
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-CCc---EEEEEhHHHHh---
Confidence 56899999998888776321 0 00112346789999999999999999997320 111 12333332111
Q ss_pred HHHHHHHHhccCCCCCCccHHHHHHHHHhHhCCceEEEEEecCCCCCc-------cc----hhhccCC---CCCCCCCcE
Q 038637 275 VTKSILKSIANDQSNNDDDLNLLQEKLKKQLSGNKFLLVLDDVWNKNY-------NY----WSILSCP---FGAGAPGSK 340 (962)
Q Consensus 275 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-------~~----~~~l~~~---l~~~~~gs~ 340 (962)
.. .......+...+...-..++.+|++|++..-.. .. ...+... +.....+..
T Consensus 85 -----------~~--~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~ 151 (322)
T 1xwi_A 85 -----------KW--LGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGIL 151 (322)
T ss_dssp -----------SS--CCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEE
T ss_pred -----------hh--hhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEE
Confidence 00 111112222222222245778999999943200 00 0111111 111224455
Q ss_pred EEEEecChh-hHhh--hCCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCC-hHHHHHHH
Q 038637 341 IVVTTRNLD-VANL--TRAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGL-PLAAKTLG 412 (962)
Q Consensus 341 ilvTtR~~~-v~~~--~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~gl-PLai~~~~ 412 (962)
||.||.... +... -.-...+.+...+.++-.+++..+.-... ..........|++.+.|. +-.|..+.
T Consensus 152 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~----~~l~~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 152 VLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQ----NSLTEADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp EEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCC----BCCCHHHHHHHHHTCTTCCHHHHHHHH
T ss_pred EEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCC----CCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 665665432 1111 12224577888888988899887653211 111245677899999887 44455544
No 194
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.70 E-value=0.00019 Score=78.09 Aligned_cols=185 Identities=14% Similarity=0.063 Sum_probs=98.2
Q ss_pred CccccchhhHHHHHHHHhcC---C---CCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHH
Q 038637 201 AEVYGREKEEEEIVELLLND---G---LRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFR 274 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~---~---~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 274 (962)
.+++|.+..++.|.+.+... . .......+-|.++|++|+|||+||+.+++. ....| +.+.++ +
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~--~~~~~---~~v~~~------~ 119 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTF---FSVSSS------D 119 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHH--HTCEE---EEEEHH------H
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHH--hCCCE---EEeeHH------H
Confidence 56899999999998877321 0 001123355789999999999999999983 22222 222221 1
Q ss_pred HHHHHHHHhccCCCCCCccHHHHHHHHHhHhCCceEEEEEecCCCCCcc-----------chhhccCCCC---CCCCCcE
Q 038637 275 VTKSILKSIANDQSNNDDDLNLLQEKLKKQLSGNKFLLVLDDVWNKNYN-----------YWSILSCPFG---AGAPGSK 340 (962)
Q Consensus 275 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~-----------~~~~l~~~l~---~~~~gs~ 340 (962)
+ .... .......+...+...-..++.+|+||++..-... ....+...+. ....+..
T Consensus 120 l----~~~~------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~ 189 (355)
T 2qp9_X 120 L----VSKW------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVL 189 (355)
T ss_dssp H----HSCC---------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEE
T ss_pred H----hhhh------cchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeE
Confidence 1 1110 0011112222222222457889999999532110 0111211111 1124555
Q ss_pred EEEEecChh-----hHhhhCCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCC-hHHHHHHH
Q 038637 341 IVVTTRNLD-----VANLTRAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGL-PLAAKTLG 412 (962)
Q Consensus 341 ilvTtR~~~-----v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~gl-PLai~~~~ 412 (962)
||.||.... +.. .-...+.+...+.++-.+++..+...... ..-......|++.+.|. |-.|..+.
T Consensus 190 vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~----~~~~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 190 VLGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPS----VLTKEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp EEEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCB----CCCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCC----CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 666776532 222 22345778888999999999877632211 11134567888999884 44454443
No 195
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.68 E-value=0.00021 Score=78.01 Aligned_cols=186 Identities=11% Similarity=0.025 Sum_probs=99.9
Q ss_pred CccccchhhHHHHHHHHhcC----CC--CCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHH
Q 038637 201 AEVYGREKEEEEIVELLLND----GL--RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFR 274 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~----~~--~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 274 (962)
.+++|.+..++.|.+.+... .. ......+.|.|+|++|+|||+||+.+++. .... .+.++++.-..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~---~~~i~~~~l~~--- 155 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQ--SGAT---FFSISASSLTS--- 155 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHH--TTCE---EEEEEGGGGCC---
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHH--cCCe---EEEEehHHhhc---
Confidence 46899999999998877421 00 00123567899999999999999999873 2222 23444432211
Q ss_pred HHHHHHHHhccCCCCCCccHHHHHH-HHHhHhCCceEEEEEecCCCCC-----------ccchhhccCCCC----CCCCC
Q 038637 275 VTKSILKSIANDQSNNDDDLNLLQE-KLKKQLSGNKFLLVLDDVWNKN-----------YNYWSILSCPFG----AGAPG 338 (962)
Q Consensus 275 ~~~~il~~l~~~~~~~~~~~~~~~~-~l~~~l~~kr~LlVlDdv~~~~-----------~~~~~~l~~~l~----~~~~g 338 (962)
. .......... .+...-..++.+|+||++..-. ......+...+. ....+
T Consensus 156 -----------~---~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~ 221 (357)
T 3d8b_A 156 -----------K---WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDR 221 (357)
T ss_dssp -----------S---STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCC
T ss_pred -----------c---ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCC
Confidence 0 0011111122 2222223567899999983210 001112222111 11234
Q ss_pred cEEEEEecChh-hHhhh--CCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCC-ChHHHHHHH
Q 038637 339 SKIVVTTRNLD-VANLT--RAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKG-LPLAAKTLG 412 (962)
Q Consensus 339 s~ilvTtR~~~-v~~~~--~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~g-lPLai~~~~ 412 (962)
..||.||.... +.... .-...+.+...+.++..+++...+-.... .-..+....|++.+.| .|-.|..+.
T Consensus 222 v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~----~l~~~~l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 222 ILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQC----CLSEEEIEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp EEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCB----CCCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCC----CccHHHHHHHHHHcCCCCHHHHHHHH
Confidence 45665665432 21111 12235678888889888888776532111 1124567788999988 555565554
No 196
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.64 E-value=0.00073 Score=74.97 Aligned_cols=110 Identities=9% Similarity=0.131 Sum_probs=71.5
Q ss_pred ccccCCCCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCccccc-ccccCCCcCCeEeccCCCCccccc
Q 038637 578 ESVCDVEHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFNLP-NEIGNLKHLRCLNLSRTRIQILPE 656 (962)
Q Consensus 578 ~~~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~lp-~~i~~L~~Lr~L~Ls~~~i~~lp~ 656 (962)
.+|.+|.+|+++.+..+. ......+....|..+..|+.+.+..+ +..++ ..+..+..|+.+.+..+ +..++.
T Consensus 81 ~AF~~C~~L~~i~~~~n~----p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~ 153 (394)
T 4gt6_A 81 NAFYNCTSLKRVTIQDNK----PSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFHHCEELDTVTIPEG-VTSVAD 153 (394)
T ss_dssp TTTTTCTTCCEEEEGGGC----CCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTTTCTTCCEEECCTT-CCEECT
T ss_pred HHhhCCccCceEeecCCC----CCeeeEechhhchhcccceeeccCCc--cceehhhhhhhhcccccccccce-eeeecc
Confidence 457789999998765421 00123455566888888888877654 55665 45788899999998754 444443
Q ss_pred -cccccccCcEEeeCCCccccccchhcccCCCccEEecCCC
Q 038637 657 -SINSLYNLHTILLENCWELKKLCKDMGNLTKLRHLRNSDA 696 (962)
Q Consensus 657 -~i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L~~L~l~~~ 696 (962)
.+..+.+|+.+.+..+ +..+....-...+|+.+.+..+
T Consensus 154 ~~F~~c~~L~~i~~~~~--~~~I~~~aF~~~~l~~i~ip~~ 192 (394)
T 4gt6_A 154 GMFSYCYSLHTVTLPDS--VTAIEERAFTGTALTQIHIPAK 192 (394)
T ss_dssp TTTTTCTTCCEEECCTT--CCEECTTTTTTCCCSEEEECTT
T ss_pred cceecccccccccccce--eeEeccccccccceeEEEECCc
Confidence 5667888998888764 4444443333456777776544
No 197
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.63 E-value=0.00011 Score=83.22 Aligned_cols=145 Identities=17% Similarity=0.216 Sum_probs=78.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhccc------ce-EEEEEeCCCCCHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHF------QF-KAWACVSEDFDVF 273 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F------~~-~~wv~v~~~~~~~ 273 (962)
+++|||+.+++.+...|.... ..-+.++|++|+|||++|+.+++. +...+ .. .+.++++
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~------~~~~LL~G~pG~GKT~la~~la~~--l~~~~~p~~l~~~~~~~l~~~------ 245 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQ--IINNEVPEILRDKRVMTLDMG------ 245 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHH--HHSSCSCTTTSSCCEECC---------
T ss_pred CCccCcHHHHHHHHHHHhccC------CCCeEEECCCCCCHHHHHHHHHHH--HHhCCCChhhcCCeEEEeeCC------
Confidence 459999999999999996532 245679999999999999999873 21111 11 1122222
Q ss_pred HHHHHHHHHhccCCCCCCccHHHHHHHHHhHhCCceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEEEecChhhHh-
Q 038637 274 RVTKSILKSIANDQSNNDDDLNLLQEKLKKQLSGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVVTTRNLDVAN- 352 (962)
Q Consensus 274 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~- 352 (962)
....+. .......+...+ -..++.+|++|. ..+....+...+.. ...++|.+|.......
T Consensus 246 -------~~~~g~---~e~~~~~~~~~~---~~~~~~iLfiD~----~~~a~~~L~~~L~~--g~v~vI~at~~~e~~~~ 306 (468)
T 3pxg_A 246 -------TKYRGE---FEDRLKKVMDEI---RQAGNIILFIDA----AIDASNILKPSLAR--GELQCIGATTLDEYRKY 306 (468)
T ss_dssp -----------------CTTHHHHHHHH---HTCCCCEEEECC------------CCCTTS--SSCEEEEECCTTTTHHH
T ss_pred -------ccccch---HHHHHHHHHHHH---HhcCCeEEEEeC----chhHHHHHHHhhcC--CCEEEEecCCHHHHHHH
Confidence 000000 111222222222 235678888991 11222334444432 2345666665443111
Q ss_pred ------hhCCCCcccCCCCCHHHHHHHHHHhh
Q 038637 353 ------LTRAYPKYGLKELSDDDCLRVVIQHS 378 (962)
Q Consensus 353 ------~~~~~~~~~l~~L~~~~~~~Lf~~~a 378 (962)
...-...+.+.+.+.++..+++...+
T Consensus 307 ~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 307 IEKDAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp HTTCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred hhcCHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 11122358899999999999998754
No 198
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.60 E-value=5.8e-05 Score=75.12 Aligned_cols=119 Identities=17% Similarity=0.157 Sum_probs=62.2
Q ss_pred hhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHhccCC
Q 038637 208 KEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSIANDQ 287 (962)
Q Consensus 208 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~ 287 (962)
..++.+.+++..... ....+.+.|+|++|+||||||+.+++. .......++|+++. .+...+...+..
T Consensus 36 ~~~~~~~~~~~~~~~--~~~~~~~~l~G~~GtGKT~la~~i~~~--~~~~~~~~~~~~~~------~~~~~~~~~~~~-- 103 (202)
T 2w58_A 36 KAIRFAERFVAEYEP--GKKMKGLYLHGSFGVGKTYLLAAIANE--LAKRNVSSLIVYVP------ELFRELKHSLQD-- 103 (202)
T ss_dssp HHHHHHHHHHHHCCS--SCCCCEEEEECSTTSSHHHHHHHHHHH--HHTTTCCEEEEEHH------HHHHHHHHC-----
T ss_pred HHHHHHHHHHHHhhh--ccCCCeEEEECCCCCCHHHHHHHHHHH--HHHcCCeEEEEEhH------HHHHHHHHHhcc--
Confidence 345556666654321 112267899999999999999999984 33333445666542 344444332211
Q ss_pred CCCCccHHHHHHHHHhHhCCceEEEEEecCCCCCccchhh--ccC-CCCCC-CCCcEEEEEecC
Q 038637 288 SNNDDDLNLLQEKLKKQLSGNKFLLVLDDVWNKNYNYWSI--LSC-PFGAG-APGSKIVVTTRN 347 (962)
Q Consensus 288 ~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~--l~~-~l~~~-~~gs~ilvTtR~ 347 (962)
.........+.+ .-+|||||++......|.. +.. .+... ..+.++|+||..
T Consensus 104 ----~~~~~~~~~~~~-----~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 104 ----QTMNEKLDYIKK-----VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp ----CCCHHHHHHHHH-----SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred ----chHHHHHHHhcC-----CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 112233333322 2399999996644334332 221 11111 245678888874
No 199
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.60 E-value=4.7e-05 Score=74.23 Aligned_cols=121 Identities=17% Similarity=0.168 Sum_probs=64.5
Q ss_pred chhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHhcc
Q 038637 206 REKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSIAN 285 (962)
Q Consensus 206 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~ 285 (962)
.+..++.+.+++..-.. .....+.|+|++|+||||||+.+++.......+ .++++ +..++...+......
T Consensus 19 ~~~~~~~~~~~~~~~~~---~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~------~~~~~~~~~~~~~~~ 88 (180)
T 3ec2_A 19 QNRALLTIRVFVHNFNP---EEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFF------DTKDLIFRLKHLMDE 88 (180)
T ss_dssp HHHHHHHHHHHHHSCCG---GGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEE------EHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccc---cCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEE------EHHHHHHHHHHHhcC
Confidence 44455555555543321 234688999999999999999998843211111 12333 344555555444433
Q ss_pred CCCCCCccHHHHHHHHHhHhCCceEEEEEecCCCCCccchh--hccCCCCCC-CCCcEEEEEecC
Q 038637 286 DQSNNDDDLNLLQEKLKKQLSGNKFLLVLDDVWNKNYNYWS--ILSCPFGAG-APGSKIVVTTRN 347 (962)
Q Consensus 286 ~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~--~l~~~l~~~-~~gs~ilvTtR~ 347 (962)
... . ...+.+. +.-+|||||++....+.|. .+...+... ..|..||+||..
T Consensus 89 ~~~-~-----~~~~~~~-----~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 89 GKD-T-----KFLKTVL-----NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp TCC-S-----HHHHHHH-----TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred chH-H-----HHHHHhc-----CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 221 1 2222222 3568999999743323333 222222111 256788888864
No 200
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.59 E-value=2.3e-05 Score=86.03 Aligned_cols=83 Identities=12% Similarity=0.108 Sum_probs=54.2
Q ss_pred CCCcccEEEeCCCcCccc-----ccccccCCCcCCeEeccCCCCc-----cccccccccccCcEEeeCCCcccc-----c
Q 038637 613 HLPRLRVFSLCGYCNIFN-----LPNEIGNLKHLRCLNLSRTRIQ-----ILPESINSLYNLHTILLENCWELK-----K 677 (962)
Q Consensus 613 ~l~~Lr~L~L~~~~~~~~-----lp~~i~~L~~Lr~L~Ls~~~i~-----~lp~~i~~L~~L~~L~L~~~~~l~-----~ 677 (962)
..+.|++|+|++| .++. ++..+..+++|++|+|++|.|. .++..+...++|++|+|++| .+. .
T Consensus 153 ~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~~ 230 (372)
T 3un9_A 153 DQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAALA 230 (372)
T ss_dssp TTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHHHH
T ss_pred cCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHHHH
Confidence 4567777777777 4543 3444566777777777777766 23555666677777777777 333 2
Q ss_pred cchhcccCCCccEEecCCCC
Q 038637 678 LCKDMGNLTKLRHLRNSDAG 697 (962)
Q Consensus 678 lp~~i~~L~~L~~L~l~~~~ 697 (962)
++..+...++|++|++++|.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHHhCCCCCEEeccCCC
Confidence 34445566777777777776
No 201
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.54 E-value=8.2e-05 Score=76.59 Aligned_cols=79 Identities=18% Similarity=0.293 Sum_probs=47.4
Q ss_pred CCCCcccEEEeCCCcCcccc---cccccCCCcCCeEeccCCCCccccccccccc--cCcEEeeCCCccccccc-------
Q 038637 612 NHLPRLRVFSLCGYCNIFNL---PNEIGNLKHLRCLNLSRTRIQILPESINSLY--NLHTILLENCWELKKLC------- 679 (962)
Q Consensus 612 ~~l~~Lr~L~L~~~~~~~~l---p~~i~~L~~Lr~L~Ls~~~i~~lp~~i~~L~--~L~~L~L~~~~~l~~lp------- 679 (962)
.+++.|+.|+|++| .+..+ |..+..+++|++|+|++|.|+.+ ..+..+. +|++|+|++|.....+|
T Consensus 167 ~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 35667777777777 45443 34455677777777777777755 3344444 67777777774333333
Q ss_pred hhcccCCCccEEe
Q 038637 680 KDMGNLTKLRHLR 692 (962)
Q Consensus 680 ~~i~~L~~L~~L~ 692 (962)
..+..+++|+.|+
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 1245666666665
No 202
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.53 E-value=8.8e-05 Score=90.96 Aligned_cols=45 Identities=27% Similarity=0.403 Sum_probs=37.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
+++|||+.+++++++.|.... ...+.++|++|+||||+|+.+++.
T Consensus 170 d~viGr~~~i~~l~~~l~~~~------~~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT------KNNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS------CCCCEEEECTTSCHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHhcCC------CCceEEEcCCCCCHHHHHHHHHHH
Confidence 458999999999999996532 234689999999999999999873
No 203
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.53 E-value=0.00043 Score=73.48 Aligned_cols=184 Identities=10% Similarity=0.026 Sum_probs=97.4
Q ss_pred CccccchhhHHHHHHHHhcCCC------CCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGL------RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFR 274 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 274 (962)
.+++|.+..++.+.+++..... ......+.+.|+|++|+||||+|+.+++. .... .+.++++.-..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~--~~~~---~~~i~~~~l~~--- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATE--CSAT---FLNISAASLTS--- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHH--TTCE---EEEEESTTTSS---
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--hCCC---eEEeeHHHHhh---
Confidence 5689999999999887743100 00113467899999999999999999873 2222 22344333211
Q ss_pred HHHHHHHHhccCCCCCCccHHHHH-HHHHhHhCCceEEEEEecCCCCCcc-----------chhhccC---CCCCC--CC
Q 038637 275 VTKSILKSIANDQSNNDDDLNLLQ-EKLKKQLSGNKFLLVLDDVWNKNYN-----------YWSILSC---PFGAG--AP 337 (962)
Q Consensus 275 ~~~~il~~l~~~~~~~~~~~~~~~-~~l~~~l~~kr~LlVlDdv~~~~~~-----------~~~~l~~---~l~~~--~~ 337 (962)
. ......... ..+......++.+|++|++..-... ....+.. .++.. ..
T Consensus 93 -----------~---~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~ 158 (297)
T 3b9p_A 93 -----------K---YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGD 158 (297)
T ss_dssp -----------S---SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------
T ss_pred -----------c---ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCC
Confidence 0 011112222 2222223456789999999432100 0001111 11111 13
Q ss_pred CcEEEEEecChh-----hHhhhCCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChH-HHHHH
Q 038637 338 GSKIVVTTRNLD-----VANLTRAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPL-AAKTL 411 (962)
Q Consensus 338 gs~ilvTtR~~~-----v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPL-ai~~~ 411 (962)
+..||.||.... +... -...+.+...+.++..+++...+-... ..-..+....|++.+.|.+- ++..+
T Consensus 159 ~v~vi~~tn~~~~l~~~l~~R--~~~~i~~~~p~~~~r~~il~~~~~~~~----~~~~~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 159 RIVVLAATNRPQELDEAALRR--FTKRVYVSLPDEQTRELLLNRLLQKQG----SPLDTEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp CEEEEEEESCGGGBCHHHHHH--CCEEEECCCCCHHHHHHHHHHHHGGGS----CCSCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred cEEEEeecCChhhCCHHHHhh--CCeEEEeCCcCHHHHHHHHHHHHHhcC----CCCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 445666776532 2221 223466777788888888776653211 11123567788889988875 45444
Q ss_pred H
Q 038637 412 G 412 (962)
Q Consensus 412 ~ 412 (962)
.
T Consensus 233 ~ 233 (297)
T 3b9p_A 233 A 233 (297)
T ss_dssp H
T ss_pred H
Confidence 3
No 204
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.52 E-value=0.00052 Score=75.91 Aligned_cols=187 Identities=12% Similarity=0.074 Sum_probs=96.9
Q ss_pred CccccchhhHHHHHHHHhcCCC------CCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGL------RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFR 274 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 274 (962)
.+++|.+..++.|.+++..... ......+.|.|+|++|+|||+||+.+++. .... .+.++++.-...
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~--~~~~---~~~v~~~~l~~~-- 187 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE--SNAT---FFNISAASLTSK-- 187 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH--TTCE---EEEECSCCC-----
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh--hcCc---EEEeeHHHhhcc--
Confidence 5699999999999888732100 00113467899999999999999999873 2222 223333222110
Q ss_pred HHHHHHHHhccCCCCCCccHHHHHHHHHhHhCCceEEEEEecCCCCC-----------ccchhhccCCCC---C-CCCCc
Q 038637 275 VTKSILKSIANDQSNNDDDLNLLQEKLKKQLSGNKFLLVLDDVWNKN-----------YNYWSILSCPFG---A-GAPGS 339 (962)
Q Consensus 275 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~-----------~~~~~~l~~~l~---~-~~~gs 339 (962)
. .......+...+...-.....+|+||++..-. ......+...+. . .....
T Consensus 188 --------~------~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v 253 (389)
T 3vfd_A 188 --------Y------VGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRV 253 (389)
T ss_dssp ------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CE
T ss_pred --------c------cchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCE
Confidence 0 00011112222222223456799999994310 000111111111 1 11234
Q ss_pred EEEEEecChh-hHhh-h-CCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChH-HHHHHH
Q 038637 340 KIVVTTRNLD-VANL-T-RAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPL-AAKTLG 412 (962)
Q Consensus 340 ~ilvTtR~~~-v~~~-~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPL-ai~~~~ 412 (962)
.||.||.... +... . .-...+.+...+.++..+++...+-... .....+....|++.+.|..- +|..+.
T Consensus 254 ~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~----~~l~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 254 LVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQG----SPLTQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp EEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSC----CCSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcC----CCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 5565665432 2111 1 1223577888999999999987763221 11224567788999988544 554443
No 205
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.52 E-value=0.0012 Score=74.08 Aligned_cols=188 Identities=13% Similarity=0.090 Sum_probs=99.3
Q ss_pred CccccchhhHHHHHHHHhcC----CC--CCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHH
Q 038637 201 AEVYGREKEEEEIVELLLND----GL--RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFR 274 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~----~~--~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 274 (962)
.+++|.+..++.|.+.+... .. ......+.|.++|++|+|||+||+.+++.. ....++.++...
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~------~~~~~~~v~~~~---- 203 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA------NNSTFFSISSSD---- 203 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC------CSSEEEEECCC-----
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc------CCCCEEEEeHHH----
Confidence 56899999999998877311 00 001234678999999999999999999732 111233333220
Q ss_pred HHHHHHHHhccCCCCCCccHHHHHHHHHhHhCCceEEEEEecCCCCCc-----------cchhhccCCCCC---CCCCcE
Q 038637 275 VTKSILKSIANDQSNNDDDLNLLQEKLKKQLSGNKFLLVLDDVWNKNY-----------NYWSILSCPFGA---GAPGSK 340 (962)
Q Consensus 275 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-----------~~~~~l~~~l~~---~~~gs~ 340 (962)
+ .....+. .......+... .-..++.+|+||++..-.. .....+...+.. ...+..
T Consensus 204 l----~~~~~g~---~~~~~~~~f~~---a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~ 273 (444)
T 2zan_A 204 L----VSKWLGE---SEKLVKNLFQL---ARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGIL 273 (444)
T ss_dssp ---------------CCCTHHHHHHH---HHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCE
T ss_pred H----Hhhhcch---HHHHHHHHHHH---HHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEE
Confidence 1 1111111 11122222222 2235678999999953210 011122222321 234566
Q ss_pred EEEEecChhhH-hh-h-CCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCC-hHHHHHHH
Q 038637 341 IVVTTRNLDVA-NL-T-RAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGL-PLAAKTLG 412 (962)
Q Consensus 341 ilvTtR~~~v~-~~-~-~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~gl-PLai~~~~ 412 (962)
||.||...... .. . .-...+.+...+.++...+|..+..... ..........|++.+.|+ +-.|..+.
T Consensus 274 vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~----~~l~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 274 VLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQ----NSLTEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp EEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSC----EECCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCC----CCCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 77777654211 11 1 1223567888888888888887753211 111235567888899884 44444443
No 206
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.51 E-value=0.00028 Score=74.62 Aligned_cols=148 Identities=9% Similarity=-0.014 Sum_probs=88.7
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccc-hh-cccceEEEEEeCC-CCCHHHHHHHHHH
Q 038637 205 GREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDR-VQ-RHFQFKAWACVSE-DFDVFRVTKSILK 281 (962)
Q Consensus 205 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~-~~-~~F~~~~wv~v~~-~~~~~~~~~~il~ 281 (962)
|-++.++.|...+... +.++..++|++|+||||+|+.+.+... .. .+.+ ..++..+. ...... .+++++
T Consensus 1 g~~~~~~~L~~~i~~~------~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~-ir~li~ 72 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS------EGISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDD-IRTIKD 72 (305)
T ss_dssp ---CHHHHHHHHHHTC------SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHH-HHHHHH
T ss_pred ChHHHHHHHHHHHHCC------CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHH-HHHHHH
Confidence 4455667777777433 357899999999999999999976311 11 1222 34444332 222222 233333
Q ss_pred HhccCCCCCCccHHHHHHHHHhHhCCceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEEEecCh-hhHhhhCCCCcc
Q 038637 282 SIANDQSNNDDDLNLLQEKLKKQLSGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVVTTRNL-DVANLTRAYPKY 360 (962)
Q Consensus 282 ~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~-~v~~~~~~~~~~ 360 (962)
.+...+ ..+++-++|+|++...+....+.+...+....+.+.+|++|.+. .+....... .+
T Consensus 73 ~~~~~p-----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~ 134 (305)
T 2gno_A 73 FLNYSP-----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VF 134 (305)
T ss_dssp HHTSCC-----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SE
T ss_pred HHhhcc-----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eE
Confidence 332211 12456789999997655555566665555444667777766443 333333333 89
Q ss_pred cCCCCCHHHHHHHHHHhh
Q 038637 361 GLKELSDDDCLRVVIQHS 378 (962)
Q Consensus 361 ~l~~L~~~~~~~Lf~~~a 378 (962)
++.++++++..+.+.+..
T Consensus 135 ~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 135 RVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EEECCCCHHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHh
Confidence 999999999999887765
No 207
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.49 E-value=2.4e-05 Score=80.56 Aligned_cols=104 Identities=22% Similarity=0.236 Sum_probs=72.7
Q ss_pred CCCcccE--EEeCCCcCccccccc----ccCCCcCCeEeccCCCCcccc---ccccccccCcEEeeCCCccccccchhcc
Q 038637 613 HLPRLRV--FSLCGYCNIFNLPNE----IGNLKHLRCLNLSRTRIQILP---ESINSLYNLHTILLENCWELKKLCKDMG 683 (962)
Q Consensus 613 ~l~~Lr~--L~L~~~~~~~~lp~~----i~~L~~Lr~L~Ls~~~i~~lp---~~i~~L~~L~~L~L~~~~~l~~lp~~i~ 683 (962)
..+.|.. ++++.| ....++.. ..++++|+.|+|++|.|+.++ ..+..+++|++|+|++| .+..+ ..+.
T Consensus 139 ~dp~L~~~~l~l~~N-~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~-~~l~ 215 (267)
T 3rw6_A 139 SDPDLVAQNIDVVLN-RRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGN-ELKSE-RELD 215 (267)
T ss_dssp GCHHHHHTTCCCCTT-SHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTS-CCCSG-GGGG
T ss_pred CCcchhhcCccccCC-HHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCC-ccCCc-hhhh
Confidence 3444554 555555 33333322 256899999999999998654 66789999999999999 66665 3355
Q ss_pred cCC--CccEEecCCCCCccccCC-------CCCCCCCCCccCCeE
Q 038637 684 NLT--KLRHLRNSDAGLLEEMPK-------GFGKLTSLLTLGRFV 719 (962)
Q Consensus 684 ~L~--~L~~L~l~~~~~~~~~p~-------~i~~l~~L~~L~~~~ 719 (962)
.+. +|++|++.+|.....+|. .+..+++|+.|....
T Consensus 216 ~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg~~ 260 (267)
T 3rw6_A 216 KIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDGHE 260 (267)
T ss_dssp GGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESSCB
T ss_pred hcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeECCcC
Confidence 555 999999999996555552 256777887775443
No 208
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.48 E-value=0.0012 Score=70.04 Aligned_cols=180 Identities=14% Similarity=0.106 Sum_probs=95.5
Q ss_pred CccccchhhHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGL-------RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVF 273 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 273 (962)
.+++|.+..+++|.+++..... .+-...+.|.|+|++|+|||+||+.+++. .... ++.+ +..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~--~~~~-----~i~v----~~~ 83 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE--CQAN-----FISI----KGP 83 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHH--TTCE-----EEEE----CHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHH--hCCC-----EEEE----EhH
Confidence 4689999999888887743100 00123467899999999999999999973 2222 2222 222
Q ss_pred HHHHHHHHHhccCCCCCCccHHHHHHHHHhHhCCceEEEEEecCCCCCc--------------cchhhccCCCC--CCCC
Q 038637 274 RVTKSILKSIANDQSNNDDDLNLLQEKLKKQLSGNKFLLVLDDVWNKNY--------------NYWSILSCPFG--AGAP 337 (962)
Q Consensus 274 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--------------~~~~~l~~~l~--~~~~ 337 (962)
.+. ....+.. .. .+...+.......+.+|++|++..-.. .....+...+. ....
T Consensus 84 ~l~----~~~~g~~---~~---~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~ 153 (301)
T 3cf0_A 84 ELL----TMWFGES---EA---NVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 153 (301)
T ss_dssp HHH----HHHHTTC---TT---HHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTS
T ss_pred HHH----hhhcCch---HH---HHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCC
Confidence 222 2222211 11 122223333345678999999942100 00112222111 1124
Q ss_pred CcEEEEEecChhhH-hh-hC---CCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChH
Q 038637 338 GSKIVVTTRNLDVA-NL-TR---AYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPL 406 (962)
Q Consensus 338 gs~ilvTtR~~~v~-~~-~~---~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPL 406 (962)
+..||.||...... .. .. -...+.+...+.++-.+++....-.. ....... ...++..+.|.|=
T Consensus 154 ~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~-~~~~~~~----~~~la~~~~g~sg 222 (301)
T 3cf0_A 154 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKS-PVAKDVD----LEFLAKMTNGFSG 222 (301)
T ss_dssp SEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS-CBCSSCC----HHHHHHTCSSCCH
T ss_pred CEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccC-CCCccch----HHHHHHHcCCCCH
Confidence 55677777654321 11 11 22457888899998888887765321 1111122 2345566777664
No 209
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.39 E-value=0.00013 Score=71.37 Aligned_cols=114 Identities=16% Similarity=0.102 Sum_probs=68.4
Q ss_pred ccCCCCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCccc-----ccccccCCCcCCeEeccCCCCcc-
Q 038637 580 VCDVEHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFN-----LPNEIGNLKHLRCLNLSRTRIQI- 653 (962)
Q Consensus 580 ~~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~-----lp~~i~~L~~Lr~L~Ls~~~i~~- 653 (962)
+...+.|++|.+.++..+.... .......+...+.|++|+|++| .+.. +...+.....|++|+|++|.|..
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g--~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPT--LKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHH--HHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HhcCCCCCEEEecCCCCCCHHH--HHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 3456777777776541111000 0112233556677888888887 4543 33445556778888888887762
Q ss_pred ----ccccccccccCcEEee--CCCccccc-----cchhcccCCCccEEecCCCC
Q 038637 654 ----LPESINSLYNLHTILL--ENCWELKK-----LCKDMGNLTKLRHLRNSDAG 697 (962)
Q Consensus 654 ----lp~~i~~L~~L~~L~L--~~~~~l~~-----lp~~i~~L~~L~~L~l~~~~ 697 (962)
+...+...++|++|+| ++| .++. +...+...++|++|++++|.
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 5566667777888888 666 3332 34445566778888887775
No 210
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.38 E-value=0.00058 Score=77.22 Aligned_cols=185 Identities=14% Similarity=0.125 Sum_probs=98.8
Q ss_pred CccccchhhHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGL-------RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVF 273 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 273 (962)
..++|.+..+++|.+++..... .+....+-|.|+|++|+|||++|+.+++. ....| +.++++
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~--~~~~f---v~vn~~------ 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGP------ 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH--CSSEE---EEEEHH------
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH--hCCCE---EEEEch------
Confidence 4589999999999888753200 00123456889999999999999999873 22222 233321
Q ss_pred HHHHHHHHHhccCCCCCCccHHHHHHHHHhHhCCceEEEEEecCCCCCc-----------cchhhccCCCC--CCCCCcE
Q 038637 274 RVTKSILKSIANDQSNNDDDLNLLQEKLKKQLSGNKFLLVLDDVWNKNY-----------NYWSILSCPFG--AGAPGSK 340 (962)
Q Consensus 274 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-----------~~~~~l~~~l~--~~~~gs~ 340 (962)
.+ ...+ .......+...+.....+++.+|+||++..-.. .....+...+. ....+..
T Consensus 273 ~l----~~~~------~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~ 342 (489)
T 3hu3_A 273 EI----MSKL------AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (489)
T ss_dssp HH----HTSC------TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEE
T ss_pred Hh----hhhh------cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceE
Confidence 11 1110 111222333344444456778999999821100 01112222221 1123456
Q ss_pred EEEEecChh-hHhhh----CCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCC-hHHHHHH
Q 038637 341 IVVTTRNLD-VANLT----RAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGL-PLAAKTL 411 (962)
Q Consensus 341 ilvTtR~~~-v~~~~----~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~gl-PLai~~~ 411 (962)
||.||.... +.... .-...+.+...+.++-.+++..++-... ...... ...+++.+.|+ +-.+..+
T Consensus 343 vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~-l~~~~~----l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK-LADDVD----LEQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSC-BCTTCC----HHHHHHTCTTCCHHHHHHH
T ss_pred EEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCC-Ccchhh----HHHHHHHccCCcHHHHHHH
Confidence 666776542 22211 2223578899999999999988753211 111112 34566677764 4344433
No 211
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.37 E-value=5.1e-05 Score=70.67 Aligned_cols=46 Identities=15% Similarity=0.151 Sum_probs=33.6
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 202 EVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 202 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
.++|++..++++.+.+..... ...-|.|+|++|+|||++|+.+++.
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~----~~~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK----RTSPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT----CSSCEEEEEETTCCHHHHHGGGCCT
T ss_pred CceeCCHHHHHHHHHHHHHhC----CCCcEEEECCCCccHHHHHHHHHHh
Confidence 578999999888888754221 1234779999999999999999874
No 212
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.36 E-value=0.0011 Score=71.64 Aligned_cols=180 Identities=18% Similarity=0.121 Sum_probs=96.2
Q ss_pred CCccccchhhHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCH
Q 038637 200 EAEVYGREKEEEEIVELLLNDGL-------RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDV 272 (962)
Q Consensus 200 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~ 272 (962)
-+++.|.++.+++|.+.+.-.-. -+-...+-|.++|++|.|||.||+++++. ....| +.+..+.-.+
T Consensus 147 ~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e--~~~~f---~~v~~s~l~s- 220 (405)
T 4b4t_J 147 YDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH--TDCKF---IRVSGAELVQ- 220 (405)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH--HTCEE---EEEEGGGGSC-
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh--hCCCc---eEEEhHHhhc-
Confidence 35688999988888776642100 01123466889999999999999999983 33333 2333332211
Q ss_pred HHHHHHHHHHhccCCCCCCccHHHHHHHHHhHhCCceEEEEEecCCCCC--------ccc------hhhccCCCC--CCC
Q 038637 273 FRVTKSILKSIANDQSNNDDDLNLLQEKLKKQLSGNKFLLVLDDVWNKN--------YNY------WSILSCPFG--AGA 336 (962)
Q Consensus 273 ~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~--------~~~------~~~l~~~l~--~~~ 336 (962)
.. .......+.+.....-+..+++|++|++..-. ... ...+...+. ...
T Consensus 221 -------------k~--vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~ 285 (405)
T 4b4t_J 221 -------------KY--IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETS 285 (405)
T ss_dssp -------------SS--TTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCC
T ss_pred -------------cc--cchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCC
Confidence 00 11111122222222224568999999984310 000 111111111 122
Q ss_pred CCcEEEEEecChhh-----HhhhCCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCCh
Q 038637 337 PGSKIVVTTRNLDV-----ANLTRAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLP 405 (962)
Q Consensus 337 ~gs~ilvTtR~~~v-----~~~~~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glP 405 (962)
.+..||.||...+. .....-...+.++..+.++-.++|..+.-.. ......+ ...|++.+.|+-
T Consensus 286 ~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~-~l~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 286 KNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKM-NLTRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp CCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTS-BCCSSCC----HHHHHHHCCSCC
T ss_pred CCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCC-CCCccCC----HHHHHHHCCCCC
Confidence 44456667765432 1111334568888888888888887765221 1111222 456777887754
No 213
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.26 E-value=0.0016 Score=71.66 Aligned_cols=180 Identities=16% Similarity=0.101 Sum_probs=97.0
Q ss_pred cCCccccchhhHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCC
Q 038637 199 NEAEVYGREKEEEEIVELLLNDGL-------RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFD 271 (962)
Q Consensus 199 ~~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~ 271 (962)
.-+++.|.++.+++|.+.+.-.-. .+-...+-|.++|++|.|||+||+++++. ....| +.+..+.-.+
T Consensus 179 ~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e--~~~~~---~~v~~s~l~s 253 (437)
T 4b4t_L 179 TFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT--IGANF---IFSPASGIVD 253 (437)
T ss_dssp CSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGTCC
T ss_pred ChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEehhhhcc
Confidence 346788999988888776642100 01124577889999999999999999983 33332 2333332211
Q ss_pred HHHHHHHHHHHhccCCCCCCccHHHHHHH-HHhHhCCceEEEEEecCCCCC------cc--------chhhccCCCC--C
Q 038637 272 VFRVTKSILKSIANDQSNNDDDLNLLQEK-LKKQLSGNKFLLVLDDVWNKN------YN--------YWSILSCPFG--A 334 (962)
Q Consensus 272 ~~~~~~~il~~l~~~~~~~~~~~~~~~~~-l~~~l~~kr~LlVlDdv~~~~------~~--------~~~~l~~~l~--~ 334 (962)
. ...+....... ....-...+++|++|++..-. .. ....+...+. .
T Consensus 254 --------------k---~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 316 (437)
T 4b4t_L 254 --------------K---YIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD 316 (437)
T ss_dssp --------------S---SSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS
T ss_pred --------------c---cchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhccc
Confidence 0 11111222222 222224578999999994310 00 0111222221 1
Q ss_pred CCCCcEEEEEecChhhHh-h-hC---CCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCCh
Q 038637 335 GAPGSKIVVTTRNLDVAN-L-TR---AYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLP 405 (962)
Q Consensus 335 ~~~gs~ilvTtR~~~v~~-~-~~---~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glP 405 (962)
...+..||.||...+... . .. -...+.++..+.++-.++|..+.-.... ....+ ...|++.+.|+-
T Consensus 317 ~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~d~d----l~~lA~~t~G~s 387 (437)
T 4b4t_L 317 NLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKK-TGEFD----FEAAVKMSDGFN 387 (437)
T ss_dssp CTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCB-CSCCC----HHHHHHTCCSCC
T ss_pred CCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCC-CcccC----HHHHHHhCCCCC
Confidence 224557777877644322 1 11 2245778888888888888766532211 11222 356777887754
No 214
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.25 E-value=0.00084 Score=73.84 Aligned_cols=53 Identities=28% Similarity=0.232 Sum_probs=38.8
Q ss_pred cCCccccchhhHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 199 NEAEVYGREKEEEEIVELLLNDGL-------RADDGFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 199 ~~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
.-+++.|.+..+++|.+.+.-.-. -+-...+-|.++|++|.|||+||+++++.
T Consensus 170 ~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 170 TYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred CHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 346788999999988876642100 01124566889999999999999999983
No 215
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.24 E-value=0.00012 Score=71.52 Aligned_cols=90 Identities=20% Similarity=0.201 Sum_probs=70.1
Q ss_pred hhhhCCCCcccEEEeCCCcCccc-----ccccccCCCcCCeEeccCCCCc-----cccccccccccCcEEeeCCCccccc
Q 038637 608 HMLLNHLPRLRVFSLCGYCNIFN-----LPNEIGNLKHLRCLNLSRTRIQ-----ILPESINSLYNLHTILLENCWELKK 677 (962)
Q Consensus 608 ~~~l~~l~~Lr~L~L~~~~~~~~-----lp~~i~~L~~Lr~L~Ls~~~i~-----~lp~~i~~L~~L~~L~L~~~~~l~~ 677 (962)
...+...+.|+.|+|++|..+.. +...+....+|++|+|++|.|. .+...+...++|++|+|++| .++.
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~ 107 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESN-FISG 107 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCC-cCCH
Confidence 34577899999999999823432 4456777899999999999987 35566677789999999999 4543
Q ss_pred -----cchhcccCCCccEEec--CCCCC
Q 038637 678 -----LCKDMGNLTKLRHLRN--SDAGL 698 (962)
Q Consensus 678 -----lp~~i~~L~~L~~L~l--~~~~~ 698 (962)
+...+...++|++|++ ++|..
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i 135 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPL 135 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCC
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCC
Confidence 5666788899999999 77763
No 216
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.23 E-value=0.0013 Score=71.04 Aligned_cols=176 Identities=18% Similarity=0.179 Sum_probs=91.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSIL 280 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 280 (962)
+.++|.+..++.+...+..... .......+.++|++|+||||||+.++.. ....|. ..-+....
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~-~~~~~~~~ll~Gp~G~GKTTLa~~ia~~--l~~~~~----~~sg~~~~--------- 88 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKM-RGEVLDHVLLAGPPGLGKTTLAHIIASE--LQTNIH----VTSGPVLV--------- 88 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHH-HTCCCCCEEEESSTTSSHHHHHHHHHHH--HTCCEE----EEETTTCC---------
T ss_pred HHccCcHHHHHHHHHHHHHHHh-cCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCEE----EEechHhc---------
Confidence 4578988888877766643200 0123467899999999999999999873 222211 11111110
Q ss_pred HHhccCCCCCCccHHHHHHHHHhHhCCceEEEEEecCCCCCccchhhccCCCCCC--------C----------CCcEEE
Q 038637 281 KSIANDQSNNDDDLNLLQEKLKKQLSGNKFLLVLDDVWNKNYNYWSILSCPFGAG--------A----------PGSKIV 342 (962)
Q Consensus 281 ~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~--------~----------~gs~il 342 (962)
....+...+ ..+. ++-++++|++..-.....+.+...+... . +...++
T Consensus 89 ------------~~~~l~~~~-~~~~-~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li 154 (334)
T 1in4_A 89 ------------KQGDMAAIL-TSLE-RGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLV 154 (334)
T ss_dssp ------------SHHHHHHHH-HHCC-TTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEE
T ss_pred ------------CHHHHHHHH-HHcc-CCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEE
Confidence 011111111 1122 2346677777432221222221110000 0 112222
Q ss_pred -EEecChhhHhhhC--CCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCChHHHHH
Q 038637 343 -VTTRNLDVANLTR--AYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLPLAAKT 410 (962)
Q Consensus 343 -vTtR~~~v~~~~~--~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~ 410 (962)
.|++...+..... ......+++.+.++-.+++.+.+-.. + .....+.+..|++.++|.|-.+.-
T Consensus 155 ~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~-~---~~~~~~~~~~ia~~~~G~~R~a~~ 221 (334)
T 1in4_A 155 GATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLM-D---VEIEDAAAEMIAKRSRGTPRIAIR 221 (334)
T ss_dssp EEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHT-T---CCBCHHHHHHHHHTSTTCHHHHHH
T ss_pred EecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHc-C---CCcCHHHHHHHHHhcCCChHHHHH
Confidence 3444333222111 11247899999999999998875321 1 122356788999999999965443
No 217
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.23 E-value=0.0017 Score=71.32 Aligned_cols=179 Identities=17% Similarity=0.119 Sum_probs=94.7
Q ss_pred CccccchhhHHHHHHHHhcC----C---CCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHH
Q 038637 201 AEVYGREKEEEEIVELLLND----G---LRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVF 273 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~----~---~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 273 (962)
+++.|.++.+++|.+.+.-. + .-+-...+-|.++|++|.|||+||+++++ +....| +.+..+.-.+
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~--e~~~~f---i~vs~s~L~s-- 281 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVAN--RTDATF---IRVIGSELVQ-- 281 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHH--HHTCEE---EEEEGGGGCC--
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHh--ccCCCe---EEEEhHHhhc--
Confidence 56889999998887765320 0 00113456788999999999999999998 333333 2333322111
Q ss_pred HHHHHHHHHhccCCCCCCccHHHHHHHHHhHhCCceEEEEEecCCCCC------cc--------chhhccCCCC--CCCC
Q 038637 274 RVTKSILKSIANDQSNNDDDLNLLQEKLKKQLSGNKFLLVLDDVWNKN------YN--------YWSILSCPFG--AGAP 337 (962)
Q Consensus 274 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~------~~--------~~~~l~~~l~--~~~~ 337 (962)
.. .......+.......-...+++|++|++..-. .. ....+...+. ....
T Consensus 282 ------------k~--vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 347 (467)
T 4b4t_H 282 ------------KY--VGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRG 347 (467)
T ss_dssp ------------CS--SSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTT
T ss_pred ------------cc--CCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCC
Confidence 00 11111222222222334568999999984310 00 0011111111 1223
Q ss_pred CcEEEEEecChhhH-hh-h---CCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCCh
Q 038637 338 GSKIVVTTRNLDVA-NL-T---RAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLP 405 (962)
Q Consensus 338 gs~ilvTtR~~~v~-~~-~---~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glP 405 (962)
+..||.||...+.. .. . .-...+.+...+.++-.++|..+.-... ....-+ ...|++.|.|+-
T Consensus 348 ~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~-l~~dvd----l~~LA~~T~GfS 415 (467)
T 4b4t_H 348 NIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMS-VERGIR----WELISRLCPNST 415 (467)
T ss_dssp TEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSC-BCSSCC----HHHHHHHCCSCC
T ss_pred cEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCC-CCCCCC----HHHHHHHCCCCC
Confidence 44566677653321 11 1 2345688888888888888877653211 111222 355777887753
No 218
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.22 E-value=0.00096 Score=80.73 Aligned_cols=148 Identities=17% Similarity=0.186 Sum_probs=79.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccc---hhcc-cceEEEEEeCCCCCHHHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDR---VQRH-FQFKAWACVSEDFDVFRVT 276 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~---~~~~-F~~~~wv~v~~~~~~~~~~ 276 (962)
.++|||+.+++++...|.... ..-+.++|++|+|||++|+.+++... +... ....+ +.+.-
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~------~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~-~~~~~-------- 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT------KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRV-MTLDM-------- 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS------SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCE-ECC----------
T ss_pred CCccCchHHHHHHHHHHhCCC------CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeE-EEecc--------
Confidence 469999999999999996533 23478999999999999999987310 0000 11111 11111
Q ss_pred HHHHHHhccCCCCCCccHHHHHHHHHhHhCCceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEEEecChhhHhh---
Q 038637 277 KSILKSIANDQSNNDDDLNLLQEKLKKQLSGNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVVTTRNLDVANL--- 353 (962)
Q Consensus 277 ~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~~v~~~--- 353 (962)
-....+. ....... .+......++.+|++|.- .+....+...+. ....++|.||........
T Consensus 245 ---g~~~~G~---~e~~l~~---~~~~~~~~~~~iLfiD~~----~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~ 309 (758)
T 3pxi_A 245 ---GTKYRGE---FEDRLKK---VMDEIRQAGNIILFIDAA----IDASNILKPSLA--RGELQCIGATTLDEYRKYIEK 309 (758)
T ss_dssp --------------CTTHHH---HHHHHHTCCCCEEEECC------------CCCTT--SSSCEEEEECCTTTTHHHHTT
T ss_pred ---cccccch---HHHHHHH---HHHHHHhcCCEEEEEcCc----hhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhc
Confidence 0000000 1112222 233333467789999921 122223333333 234566666655442111
Q ss_pred ----hCCCCcccCCCCCHHHHHHHHHHhh
Q 038637 354 ----TRAYPKYGLKELSDDDCLRVVIQHS 378 (962)
Q Consensus 354 ----~~~~~~~~l~~L~~~~~~~Lf~~~a 378 (962)
..-...+.++..+.++..+++....
T Consensus 310 d~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 310 DAALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp CSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred cHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 1112458899999999999998654
No 219
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.21 E-value=0.00046 Score=71.90 Aligned_cols=47 Identities=19% Similarity=0.122 Sum_probs=33.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
..++|.+..+.++.+.+..... ....|.|+|++|+|||++|+.+++.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~----~~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAP----LDKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTT----SCSCEEEECCTTSCHHHHHHHHHHT
T ss_pred ccceeCCHHHHHHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHHHh
Confidence 3588999999988877754321 2245789999999999999999874
No 220
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.20 E-value=0.0011 Score=70.71 Aligned_cols=66 Identities=17% Similarity=0.172 Sum_probs=43.5
Q ss_pred ccccchhhHHHHHHHHhcCC---CCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCC
Q 038637 202 EVYGREKEEEEIVELLLNDG---LRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSED 269 (962)
Q Consensus 202 ~~vGr~~~~~~l~~~L~~~~---~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~ 269 (962)
.++|.+..++.+...+.... .........+.++|++|+|||++|+.++.. ....-...+.+.++..
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~--~~~~~~~~~~~~~~~~ 86 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT--LFDTEEAMIRIDMTEY 86 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHH--HHSCGGGEEEEEGGGC
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHH--HcCCCcceEEeecccc
Confidence 47799999888888876431 101123468999999999999999999873 2221122345555543
No 221
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.20 E-value=0.0021 Score=77.91 Aligned_cols=155 Identities=18% Similarity=0.212 Sum_probs=85.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchh----cccceEEEE-EeCCCCCHHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQ----RHFQFKAWA-CVSEDFDVFRV 275 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~----~~F~~~~wv-~v~~~~~~~~~ 275 (962)
..++||+.+++++++.|... ...-+.|+|++|+|||++|+.+++...-. ......+|. +.+.-
T Consensus 186 d~~iGr~~~i~~l~~~l~~~------~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l------ 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRR------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL------ 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC--------
T ss_pred CCccCCHHHHHHHHHHHhcc------CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH------
Confidence 46899999999999999543 23456899999999999999998732110 012333322 11110
Q ss_pred HHHHHHHhccCCCCCCccHHHHHHHHHhHh-CCceEEEEEecCCCC--------Cccc-hhhccCCCCCCCCCcEEEEEe
Q 038637 276 TKSILKSIANDQSNNDDDLNLLQEKLKKQL-SGNKFLLVLDDVWNK--------NYNY-WSILSCPFGAGAPGSKIVVTT 345 (962)
Q Consensus 276 ~~~il~~l~~~~~~~~~~~~~~~~~l~~~l-~~kr~LlVlDdv~~~--------~~~~-~~~l~~~l~~~~~gs~ilvTt 345 (962)
+.+.. .....+.....+.+.+ ..++.+|++|++..- ...+ ...+...+. . .+..+|.+|
T Consensus 254 -------~~~~~--~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-~-~~~~~I~at 322 (758)
T 1r6b_X 254 -------LAGTK--YRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-S-GKIRVIGST 322 (758)
T ss_dssp --------CCCC--CSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-S-CCCEEEEEE
T ss_pred -------hcccc--ccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-C-CCeEEEEEe
Confidence 00011 1222333333333333 346789999999542 0111 222333332 2 345666666
Q ss_pred cChhhHhhh-------CCCCcccCCCCCHHHHHHHHHHhh
Q 038637 346 RNLDVANLT-------RAYPKYGLKELSDDDCLRVVIQHS 378 (962)
Q Consensus 346 R~~~v~~~~-------~~~~~~~l~~L~~~~~~~Lf~~~a 378 (962)
......... .-...+.+...+.++..+++....
T Consensus 323 ~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 323 TYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp CHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred CchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 544322111 111257889999999888887543
No 222
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.18 E-value=0.018 Score=63.17 Aligned_cols=80 Identities=8% Similarity=0.058 Sum_probs=47.0
Q ss_pred cCCCCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCccccc-ccccCCCcCCeEeccCCCCcccccccc
Q 038637 581 CDVEHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFNLP-NEIGNLKHLRCLNLSRTRIQILPESIN 659 (962)
Q Consensus 581 ~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~lp-~~i~~L~~Lr~L~Ls~~~i~~lp~~i~ 659 (962)
....+|+++.+.+. ...+....|.+|.+|+.+.|..+ +..++ ..|.++ .|..+.+.. .++.++...-
T Consensus 43 ~~~~~i~~v~ip~~--------vt~Ig~~aF~~C~~L~~I~lp~~--v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF 110 (379)
T 4h09_A 43 KDRDRISEVRVNSG--------ITSIGEANFNSCYNMTKVTVAST--VTSIGDGAFADT-KLQSYTGME-RVKKFGDYVF 110 (379)
T ss_dssp GGGGGCSEEEECTT--------EEEECTTTTTTCTTCCEEEECTT--CCEECTTTTTTC-CCCEEEECT-TCCEECTTTT
T ss_pred ccccCCEEEEeCCC--------ccChHHHHhhCCCCCCEEEeCCc--ceEechhhhcCC-CCceEECCc-eeeEecccee
Confidence 34556676665542 13455666778888888888653 55665 345554 566666543 3555555433
Q ss_pred ccccCcEEeeCCC
Q 038637 660 SLYNLHTILLENC 672 (962)
Q Consensus 660 ~L~~L~~L~L~~~ 672 (962)
...+|+.+.+..+
T Consensus 111 ~~~~L~~i~lp~~ 123 (379)
T 4h09_A 111 QGTDLDDFEFPGA 123 (379)
T ss_dssp TTCCCSEEECCTT
T ss_pred ccCCcccccCCCc
Confidence 3446777777543
No 223
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.14 E-value=0.00062 Score=72.23 Aligned_cols=47 Identities=15% Similarity=0.205 Sum_probs=36.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
..++|+...+.++.+.+..... ....|.|+|.+|+|||++|+.+++.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~----~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP----SDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS----TTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhC----CCCcEEEECCCCchHHHHHHHHHHh
Confidence 3588999999999888865322 2245679999999999999999873
No 224
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.13 E-value=0.00028 Score=73.74 Aligned_cols=51 Identities=27% Similarity=0.298 Sum_probs=35.1
Q ss_pred CccccchhhHHHHHHHHhcCCCC------CCCCcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 201 AEVYGREKEEEEIVELLLNDGLR------ADDGFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~------~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
.+++|.+..++.+.+.+..-... +....+-+.|+|++|+|||+||+.+++.
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHH
Confidence 56899998888887765410000 0011233779999999999999999873
No 225
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.10 E-value=0.0011 Score=74.81 Aligned_cols=94 Identities=9% Similarity=0.060 Sum_probs=57.5
Q ss_pred EEEEEecCCCCCccchhhccCCCCCCCCCcEEEEEe----------c----C----hhhHhhhCCCCcccCCCCCHHHHH
Q 038637 310 FLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVVTT----------R----N----LDVANLTRAYPKYGLKELSDDDCL 371 (962)
Q Consensus 310 ~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTt----------R----~----~~v~~~~~~~~~~~l~~L~~~~~~ 371 (962)
-++++|++..-+.+..+.+...+...... .+|+.| . . ..+...+ ..+.+.+++.++..
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~---~~~~~~~~~~~e~~ 372 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRV---MIIRTMLYTPQEMK 372 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTE---EEEECCCCCHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhc---ceeeCCCCCHHHHH
Confidence 38999999766656666666666544334 344344 2 1 0122222 34799999999999
Q ss_pred HHHHHhhcCCCCCCCCcchHHHHHHHHHhc-CCChHHHHHH
Q 038637 372 RVVIQHSLGATGFSTNQSLKDVGEKIAKKC-KGLPLAAKTL 411 (962)
Q Consensus 372 ~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c-~glPLai~~~ 411 (962)
+++..++-... ..-..+....|++.+ +|.|-.+..+
T Consensus 373 ~iL~~~~~~~~----~~~~~~~~~~i~~~a~~g~~r~a~~l 409 (456)
T 2c9o_A 373 QIIKIRAQTEG----INISEEALNHLGEIGTKTTLRYSVQL 409 (456)
T ss_dssp HHHHHHHHHHT----CCBCHHHHHHHHHHHHHSCHHHHHHT
T ss_pred HHHHHHHHHhC----CCCCHHHHHHHHHHccCCCHHHHHHH
Confidence 99987652111 112245677788888 7888655443
No 226
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.04 E-value=0.0025 Score=67.96 Aligned_cols=51 Identities=22% Similarity=0.214 Sum_probs=37.1
Q ss_pred CccccchhhHHHHHHHHhcC--C-CC-----CCCCcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 201 AEVYGREKEEEEIVELLLND--G-LR-----ADDGFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~--~-~~-----~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
..++|.+..++.+...+... . .. .......+.++|++|+|||++|+.+++.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45889999999998877541 0 00 0012356789999999999999999873
No 227
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.04 E-value=0.0084 Score=61.81 Aligned_cols=183 Identities=14% Similarity=0.117 Sum_probs=90.0
Q ss_pred CccccchhhHHHHHHHHh---cCCC---CCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHH
Q 038637 201 AEVYGREKEEEEIVELLL---NDGL---RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFR 274 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 274 (962)
.+++|.+..++++.+.+. .... .+....+-+.|+|++|+||||||+.+++. ....| +.++.+.-.+
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~--~~~~~---~~i~~~~~~~--- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE--AKVPF---FTISGSDFVE--- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHH--HTCCE---EEECSCSSTT---
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCCE---EEEeHHHHHH---
Confidence 568999988877765542 1100 00012345889999999999999999873 22222 3333222110
Q ss_pred HHHHHHHHhccCCCCCCccHHHHHHHHHhHhCCceEEEEEecCCCCCc--------------cchhhccCCCC--CCCCC
Q 038637 275 VTKSILKSIANDQSNNDDDLNLLQEKLKKQLSGNKFLLVLDDVWNKNY--------------NYWSILSCPFG--AGAPG 338 (962)
Q Consensus 275 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--------------~~~~~l~~~l~--~~~~g 338 (962)
.. .......+...+.........++++|++..-.. .....+...+. ....+
T Consensus 84 -----------~~--~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 150 (257)
T 1lv7_A 84 -----------MF--VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEG 150 (257)
T ss_dssp -----------SC--CCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSC
T ss_pred -----------Hh--hhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCC
Confidence 00 111122333334444445678999999822100 00111111111 11234
Q ss_pred cEEEEEecChh-hHhhh-C---CCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCC-ChHHHH
Q 038637 339 SKIVVTTRNLD-VANLT-R---AYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKG-LPLAAK 409 (962)
Q Consensus 339 s~ilvTtR~~~-v~~~~-~---~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~g-lPLai~ 409 (962)
..||.||...+ +.... . -...+.+...+.++-.+++..+.-.. ...... ....++..+.| .+--|.
T Consensus 151 ~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~-~l~~~~----~~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 151 IIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRV-PLAPDI----DAAIIARGTPGFSGADLA 222 (257)
T ss_dssp EEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS-CBCTTC----CHHHHHHTCTTCCHHHHH
T ss_pred EEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcC-CCCccc----cHHHHHHHcCCCCHHHHH
Confidence 56677776543 21111 1 12356677778888777776654221 111111 13446677777 554333
No 228
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.03 E-value=0.0011 Score=73.09 Aligned_cols=178 Identities=17% Similarity=0.121 Sum_probs=93.1
Q ss_pred CCccccchhhHHHHHHHHhc----CCC---CCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCH
Q 038637 200 EAEVYGREKEEEEIVELLLN----DGL---RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDV 272 (962)
Q Consensus 200 ~~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~ 272 (962)
-+++.|.++.+++|.+.+.. .+. .+-...+-|.++|++|.|||.||+++++. ....| +.+..+.-.+
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e--~~~~f---~~v~~s~l~~- 253 (434)
T 4b4t_M 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ--TNATF---LKLAAPQLVQ- 253 (434)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGGCS-
T ss_pred hHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH--hCCCE---EEEehhhhhh-
Confidence 35788999999998876532 100 01234577889999999999999999983 33332 2333322110
Q ss_pred HHHHHHHHHHhccCCCCCCccHHHHHHHHHh-HhCCceEEEEEecCCC------CCcc----c----hhhccCCCC--CC
Q 038637 273 FRVTKSILKSIANDQSNNDDDLNLLQEKLKK-QLSGNKFLLVLDDVWN------KNYN----Y----WSILSCPFG--AG 335 (962)
Q Consensus 273 ~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~------~~~~----~----~~~l~~~l~--~~ 335 (962)
. ...+.+.....+.. .-...+++|++|++.. .... . ...+...+. ..
T Consensus 254 -------------~---~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~ 317 (434)
T 4b4t_M 254 -------------M---YIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSS 317 (434)
T ss_dssp -------------S---CSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCS
T ss_pred -------------c---ccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCC
Confidence 0 11112222222222 2234678999999832 0000 0 111222221 11
Q ss_pred CCCcEEEEEecChhhHh-hh----CCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCC
Q 038637 336 APGSKIVVTTRNLDVAN-LT----RAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGL 404 (962)
Q Consensus 336 ~~gs~ilvTtR~~~v~~-~~----~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~gl 404 (962)
..+..||.||...+... .+ .-...+.++..+.++-.++|..+.-.... ...-+ ...|++.+.|+
T Consensus 318 ~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-~~dvd----l~~lA~~t~G~ 386 (434)
T 4b4t_M 318 DDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTT-DDDIN----WQELARSTDEF 386 (434)
T ss_dssp SCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCB-CSCCC----HHHHHHHCSSC
T ss_pred CCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCC-CCcCC----HHHHHHhCCCC
Confidence 23456666776643322 11 12245778888888888888765422111 11112 35577778775
No 229
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.03 E-value=0.00021 Score=66.78 Aligned_cols=24 Identities=29% Similarity=0.271 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCchHHHHHHHHhCc
Q 038637 228 FSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
...+.|+|+.|+|||||++.++..
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999884
No 230
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.98 E-value=0.039 Score=60.51 Aligned_cols=80 Identities=11% Similarity=0.116 Sum_probs=55.5
Q ss_pred hCCCCcccEEEeCCCcCccccc-ccccCCCcCCeEeccCCCCcccccc-ccccccCcEEeeCCCccccccchhcccCCCc
Q 038637 611 LNHLPRLRVFSLCGYCNIFNLP-NEIGNLKHLRCLNLSRTRIQILPES-INSLYNLHTILLENCWELKKLCKDMGNLTKL 688 (962)
Q Consensus 611 l~~l~~Lr~L~L~~~~~~~~lp-~~i~~L~~Lr~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~~~l~~lp~~i~~L~~L 688 (962)
+....+|+.+.+.. .++.++ .+|.++.+|+.+.|..+ ++.++.. +.++ +|+.+.+..+ +..++...-...+|
T Consensus 42 ~~~~~~i~~v~ip~--~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~--l~~I~~~aF~~~~L 115 (379)
T 4h09_A 42 YKDRDRISEVRVNS--GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER--VKKFGDYVFQGTDL 115 (379)
T ss_dssp GGGGGGCSEEEECT--TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT--CCEECTTTTTTCCC
T ss_pred cccccCCEEEEeCC--CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce--eeEeccceeccCCc
Confidence 44567788888876 478886 56899999999999754 7777654 4454 6888877543 45555443334578
Q ss_pred cEEecCCC
Q 038637 689 RHLRNSDA 696 (962)
Q Consensus 689 ~~L~l~~~ 696 (962)
+.+.+..+
T Consensus 116 ~~i~lp~~ 123 (379)
T 4h09_A 116 DDFEFPGA 123 (379)
T ss_dssp SEEECCTT
T ss_pred ccccCCCc
Confidence 88887654
No 231
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.91 E-value=0.0019 Score=78.08 Aligned_cols=155 Identities=15% Similarity=0.146 Sum_probs=83.9
Q ss_pred CccccchhhHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGL---RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTK 277 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~ 277 (962)
..++|.+..++.+...+..... ........+.++|++|+|||++|+.+++. ....-...+.++++.-.+.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~--l~~~~~~~i~i~~s~~~~~----- 563 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAES--IFGDEESMIRIDMSEYMEK----- 563 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHH--HHSCTTCEEEEEGGGGCSS-----
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH--hcCCCcceEEEechhcccc-----
Confidence 4689999999999888864321 01123447999999999999999999873 2222223445555432210
Q ss_pred HHHHHhccCCCCCCccHHHHHHHHHhHhCCceEEEEEecCCCCCccchhhccCCCCC-----------CCCCcEEEEEec
Q 038637 278 SILKSIANDQSNNDDDLNLLQEKLKKQLSGNKFLLVLDDVWNKNYNYWSILSCPFGA-----------GAPGSKIVVTTR 346 (962)
Q Consensus 278 ~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~~~~~~l~~~l~~-----------~~~gs~ilvTtR 346 (962)
.......+...++. ...-+|+||++..........+...+.. .....+||+||.
T Consensus 564 ------------~~~~~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn 628 (758)
T 3pxi_A 564 ------------HSTSGGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSN 628 (758)
T ss_dssp ------------CCCC---CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEES
T ss_pred ------------cccccchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCC
Confidence 00001112222222 2334899999965544444444332221 113568888887
Q ss_pred C-----hh----hHhhhC------CCCcccCCCCCHHHHHHHHHHh
Q 038637 347 N-----LD----VANLTR------AYPKYGLKELSDDDCLRVVIQH 377 (962)
Q Consensus 347 ~-----~~----v~~~~~------~~~~~~l~~L~~~~~~~Lf~~~ 377 (962)
. .. +...+. -...+.+.+++.++..+++...
T Consensus 629 ~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~ 674 (758)
T 3pxi_A 629 VGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLM 674 (758)
T ss_dssp SSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHH
Confidence 3 11 111111 1135778888888777776553
No 232
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.88 E-value=0.0027 Score=68.94 Aligned_cols=178 Identities=17% Similarity=0.102 Sum_probs=93.4
Q ss_pred CCccccchhhHHHHHHHHhcC---CC----CCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCH
Q 038637 200 EAEVYGREKEEEEIVELLLND---GL----RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDV 272 (962)
Q Consensus 200 ~~~~vGr~~~~~~l~~~L~~~---~~----~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~ 272 (962)
-+++.|.++.+++|.+.+.-. .+ .+-...+=|.++|++|.|||.||+++++. ....| +.++.+.-.+
T Consensus 181 ~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e--~~~~f---i~v~~s~l~s- 254 (437)
T 4b4t_I 181 YSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ--TSATF---LRIVGSELIQ- 254 (437)
T ss_dssp GGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH--HTCEE---EEEESGGGCC-
T ss_pred ceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH--hCCCE---EEEEHHHhhh-
Confidence 356889999888887766321 00 01124567899999999999999999983 33333 2232222110
Q ss_pred HHHHHHHHHHhccCCCCCCccHHHHHHHHHh-HhCCceEEEEEecCCCCC------cc--------chhhccCCCC--CC
Q 038637 273 FRVTKSILKSIANDQSNNDDDLNLLQEKLKK-QLSGNKFLLVLDDVWNKN------YN--------YWSILSCPFG--AG 335 (962)
Q Consensus 273 ~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~-~l~~kr~LlVlDdv~~~~------~~--------~~~~l~~~l~--~~ 335 (962)
. ...+.+.....+.. .-+..+++|++|++..-. .. ....+...+. ..
T Consensus 255 -------------k---~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~ 318 (437)
T 4b4t_I 255 -------------K---YLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDD 318 (437)
T ss_dssp -------------S---SSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCC
T ss_pred -------------c---cCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCC
Confidence 0 11122222222222 223568999999984310 00 0111111111 12
Q ss_pred CCCcEEEEEecChhhHh-hh-C---CCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCC
Q 038637 336 APGSKIVVTTRNLDVAN-LT-R---AYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGL 404 (962)
Q Consensus 336 ~~gs~ilvTtR~~~v~~-~~-~---~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~gl 404 (962)
..+..||.||-..+... .+ . -...+.+...+.++-.++|..+.-.. ....+.+ ...|++.+.|+
T Consensus 319 ~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~-~l~~dvd----l~~LA~~T~Gf 387 (437)
T 4b4t_I 319 RGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKM-NLSEDVN----LETLVTTKDDL 387 (437)
T ss_dssp SSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTS-CBCSCCC----HHHHHHHCCSC
T ss_pred CCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCC-CCCCcCC----HHHHHHhCCCC
Confidence 23445666776644322 11 1 12357788888888888887765221 1112222 35567777775
No 233
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.83 E-value=0.0021 Score=71.99 Aligned_cols=179 Identities=17% Similarity=0.125 Sum_probs=93.9
Q ss_pred CccccchhhHHHHHHHHhcCCC------CCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHH
Q 038637 201 AEVYGREKEEEEIVELLLNDGL------RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFR 274 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~ 274 (962)
.+++|.+..++++.+.+..-.. -+..-.+-|.|+|++|+|||+||+.+++. ....| +.++++.-...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~--~~~~f---~~is~~~~~~~-- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGE--ANVPF---FHISGSDFVEL-- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHH--HTCCE---EEEEGGGTTTC--
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--cCCCe---eeCCHHHHHHH--
Confidence 5689999887777665432100 00012234789999999999999999873 22222 23333322110
Q ss_pred HHHHHHHHhccCCCCCCccHHHHHHHHHhHhCCceEEEEEecCCCCCc--------------cchhhccCCCC--CCCCC
Q 038637 275 VTKSILKSIANDQSNNDDDLNLLQEKLKKQLSGNKFLLVLDDVWNKNY--------------NYWSILSCPFG--AGAPG 338 (962)
Q Consensus 275 ~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~--------------~~~~~l~~~l~--~~~~g 338 (962)
+ ...........+.......+.+|+||++..-.. .....+...+. ....+
T Consensus 89 --------~------~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~ 154 (476)
T 2ce7_A 89 --------F------VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEG 154 (476)
T ss_dssp --------C------TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGT
T ss_pred --------H------hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCC
Confidence 0 011112233334444456789999999943110 01122221111 11245
Q ss_pred cEEEEEecChhhHh-h-hC---CCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCCh
Q 038637 339 SKIVVTTRNLDVAN-L-TR---AYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLP 405 (962)
Q Consensus 339 s~ilvTtR~~~v~~-~-~~---~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glP 405 (962)
..||.||...+... . .. -...+.+...+.++-.+++..++-.. ....... ...|++.+.|..
T Consensus 155 viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~-~l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 155 IIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNK-PLAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTS-CBCTTCC----HHHHHHTCTTCC
T ss_pred EEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhC-CCcchhh----HHHHHHhcCCCc
Confidence 56777777654322 1 11 12357788888888778887665321 1111111 344788888876
No 234
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.80 E-value=0.0046 Score=61.98 Aligned_cols=86 Identities=20% Similarity=0.108 Sum_probs=53.1
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHhc-----------cCCCCCCccHH
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSIA-----------NDQSNNDDDLN 295 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~-----------~~~~~~~~~~~ 295 (962)
.-.++.|+|++|+||||||..++. ..-..++|++....++...+.. +.+.++ ........+..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-----~~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-----LSGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQR 92 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-----HHCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-----HcCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence 446899999999999999999886 1124577888777666655443 333222 11111222223
Q ss_pred HHHHHHHhHhCCceEEEEEecCC
Q 038637 296 LLQEKLKKQLSGNKFLLVLDDVW 318 (962)
Q Consensus 296 ~~~~~l~~~l~~kr~LlVlDdv~ 318 (962)
.....++..+..+.-+||+|.+.
T Consensus 93 ~~~~~~~~l~~~~~~lliiD~~~ 115 (220)
T 2cvh_A 93 RVIGSLKKTVDSNFALVVVDSIT 115 (220)
T ss_dssp HHHHHHHHHCCTTEEEEEEECCC
T ss_pred HHHHHHHHHhhcCCCEEEEcCcH
Confidence 34455555554457789999883
No 235
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.77 E-value=0.0047 Score=71.12 Aligned_cols=50 Identities=34% Similarity=0.402 Sum_probs=35.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhC
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
.+++|.+...+.+.+.+.-..........++.++|++|+||||||+.++.
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~ 130 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAK 130 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 45889888877776554321100112456899999999999999999987
No 236
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.69 E-value=0.0017 Score=70.09 Aligned_cols=42 Identities=17% Similarity=0.200 Sum_probs=35.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhC
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
..++|++..++.+...+... ..+.++|++|+|||+||+.+.+
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~--------~~vll~G~pGtGKT~la~~la~ 68 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG--------GHILLEGVPGLAKTLSVNTLAK 68 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--------CCEEEESCCCHHHHHHHHHHHH
T ss_pred cceeCcHHHHHHHHHHHHcC--------CeEEEECCCCCcHHHHHHHHHH
Confidence 35889999999998888653 2578999999999999999987
No 237
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.65 E-value=0.005 Score=73.12 Aligned_cols=179 Identities=15% Similarity=0.149 Sum_probs=96.7
Q ss_pred CccccchhhHHHHHHHHhc----CCC---CCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHH
Q 038637 201 AEVYGREKEEEEIVELLLN----DGL---RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVF 273 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~----~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 273 (962)
+++.|.++.+++|.+++.- ... -+-...+-|.++|++|.|||+||+++++. ...+| +.|+.++
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e--lg~~~---~~v~~~~----- 273 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGPE----- 273 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT--TTCEE---EEEEHHH-----
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCeE---EEEEhHH-----
Confidence 5678999888888776532 110 01234677899999999999999999984 33333 2333211
Q ss_pred HHHHHHHHHhccCCCCCCccHHHHHHHHHhHhCCceEEEEEecCCCCCc-------cc----hhhccCCCCC--CCCCcE
Q 038637 274 RVTKSILKSIANDQSNNDDDLNLLQEKLKKQLSGNKFLLVLDDVWNKNY-------NY----WSILSCPFGA--GAPGSK 340 (962)
Q Consensus 274 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-------~~----~~~l~~~l~~--~~~gs~ 340 (962)
+ . ... .......+........+..+.+|++|++..-.. .. ...+...+.. ...+..
T Consensus 274 -l----~----sk~--~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~ 342 (806)
T 3cf2_A 274 -I----M----SKL--AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (806)
T ss_dssp -H----H----SSC--TTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEE
T ss_pred -h----h----ccc--chHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEE
Confidence 1 1 111 112223333444444456789999999843100 00 0111111111 112344
Q ss_pred EEEEecChh-hHhhhC----CCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCCh
Q 038637 341 IVVTTRNLD-VANLTR----AYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLP 405 (962)
Q Consensus 341 ilvTtR~~~-v~~~~~----~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glP 405 (962)
||.||...+ +-..+. -...+++...+.++-.++|..+.-... ...+.+ ...|++++.|+-
T Consensus 343 VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~-~~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 343 VMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK-LADDVD----LEQVANETHGHV 407 (806)
T ss_dssp EEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSE-ECTTCC----HHHHHHHCCSCC
T ss_pred EEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCC-CCcccC----HHHHHHhcCCCC
Confidence 566666533 222221 224578888888888888887642211 111222 456788888764
No 238
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.55 E-value=0.0011 Score=69.09 Aligned_cols=69 Identities=19% Similarity=0.344 Sum_probs=45.4
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEe--CCCCCHHHHHHHHHHHhccCCCCCCccHHHHHHHHHhH
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACV--SEDFDVFRVTKSILKSIANDQSNNDDDLNLLQEKLKKQ 304 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v--~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~ 304 (962)
..+++.|+|++|+||||||.+++.. .-..++|++. .+..+. ...+.+...+.+.+.
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~-----------------~~~~le~~l~~i~~~ 179 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG-----------------YNTDFNVFVDDIARA 179 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT-----------------CBCCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh-----------------hhcCHHHHHHHHHHH
Confidence 3467889999999999999999873 1123456766 333111 113455566666666
Q ss_pred hCCceEEEEEecCC
Q 038637 305 LSGNKFLLVLDDVW 318 (962)
Q Consensus 305 l~~kr~LlVlDdv~ 318 (962)
+...+ +||+|++.
T Consensus 180 l~~~~-LLVIDsI~ 192 (331)
T 2vhj_A 180 MLQHR-VIVIDSLK 192 (331)
T ss_dssp HHHCS-EEEEECCT
T ss_pred HhhCC-EEEEeccc
Confidence 65555 99999993
No 239
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.06 E-value=0.012 Score=63.15 Aligned_cols=85 Identities=24% Similarity=0.214 Sum_probs=55.4
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHhccCCCC----CCccHHHHHHHHH
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSIANDQSN----NDDDLNLLQEKLK 302 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~~~~~l~ 302 (962)
.-+++.|+|++|+||||||..++... ...=..++|++....++.. .+++++..... ...+.++....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~--~~~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEA--QKMGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 45899999999999999999988742 2222346788887777654 34455433211 2344555555565
Q ss_pred hHhC-CceEEEEEecCC
Q 038637 303 KQLS-GNKFLLVLDDVW 318 (962)
Q Consensus 303 ~~l~-~kr~LlVlDdv~ 318 (962)
..++ .+.-++|+|.+.
T Consensus 133 ~l~~~~~~dlvVIDSi~ 149 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVA 149 (356)
T ss_dssp HHHHTSCCSEEEEECTT
T ss_pred HHhhhcCCCeEEehHhh
Confidence 5543 445589999983
No 240
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.99 E-value=0.01 Score=72.60 Aligned_cols=50 Identities=20% Similarity=0.297 Sum_probs=37.9
Q ss_pred ccccchhhHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 202 EVYGREKEEEEIVELLLNDGL---RADDGFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 202 ~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
.++|.+..++.+...+..... ..+.....+.|+|+.|+|||++|+.+.+.
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~ 611 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAAT 611 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHH
Confidence 579999999998888754311 01123468899999999999999999873
No 241
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.98 E-value=0.042 Score=56.97 Aligned_cols=155 Identities=15% Similarity=0.055 Sum_probs=77.3
Q ss_pred CccccchhhHHHHHHHHhcCCC--------CCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCH
Q 038637 201 AEVYGREKEEEEIVELLLNDGL--------RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDV 272 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~--------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~ 272 (962)
.++.|.++.+++|.+.+...-. .-..... +.++|++|.||||||+.++... .. ..+++....-.+.
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLakala~~~--~~---~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLAKAVANES--GL---NFISVKGPELLNM 83 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHHHHHHHHT--TC---EEEEEETTTTCSS
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHHHHHHHHc--CC---CEEEEEcHHHHhh
Confidence 4578888888888765421100 0011223 8999999999999999998732 21 2344433221110
Q ss_pred HHHHHHHHHHhccCCCCCCccHHHHHHHHHhH-hCCceEEEEEecCCCCCc-----------cchhhccCCCCCC--CCC
Q 038637 273 FRVTKSILKSIANDQSNNDDDLNLLQEKLKKQ-LSGNKFLLVLDDVWNKNY-----------NYWSILSCPFGAG--APG 338 (962)
Q Consensus 273 ~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~-l~~kr~LlVlDdv~~~~~-----------~~~~~l~~~l~~~--~~g 338 (962)
...........+.+. -...+.++++|++..-.. .....+...+..+ ...
T Consensus 84 -----------------~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~ 146 (274)
T 2x8a_A 84 -----------------YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQ 146 (274)
T ss_dssp -----------------TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTC
T ss_pred -----------------hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCC
Confidence 000111111122221 134568999999843100 0001111112211 123
Q ss_pred cEEEEEecChhhHhh--h---CCCCcccCCCCCHHHHHHHHHHhh
Q 038637 339 SKIVVTTRNLDVANL--T---RAYPKYGLKELSDDDCLRVVIQHS 378 (962)
Q Consensus 339 s~ilvTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~Lf~~~a 378 (962)
.-++.+|...++... . .-...+.++..+.++-.++|....
T Consensus 147 ~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 147 VFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp EEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred EEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 345556666544321 1 223456788888888888887654
No 242
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.93 E-value=0.0085 Score=63.47 Aligned_cols=43 Identities=16% Similarity=0.182 Sum_probs=30.1
Q ss_pred chhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 206 REKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 206 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
+...++.+.+++..... .....+.|+|++|+|||+||+.+++.
T Consensus 133 ~~~~~~~~~~~i~~~~~---~~~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 133 RMEAFSAILDFVEQYPS---AEQKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp HHHHHHHHHHHHHHCSC---SSCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccc---cCCceEEEECCCCCCHHHHHHHHHHH
Confidence 33445555666654321 12467889999999999999999984
No 243
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.93 E-value=0.0072 Score=73.19 Aligned_cols=51 Identities=22% Similarity=0.296 Sum_probs=38.0
Q ss_pred CccccchhhHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 201 AEVYGREKEEEEIVELLLNDGL---RADDGFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
..++|.+..++.+...+..... ........+.++|++|+|||++|+.+++.
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~ 511 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA 511 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHH
Confidence 3588999999888887753211 01223457899999999999999999873
No 244
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.88 E-value=0.022 Score=59.16 Aligned_cols=82 Identities=13% Similarity=0.152 Sum_probs=54.3
Q ss_pred EEEEEcCCCchHHHHHHHHhCccchhcc--cceEEEEEeCCCCCHHHHHHHHHHHhccCCCC----CCccHHHH-HHHHH
Q 038637 230 VISINGMGGVGKTTLAQLVYNDDRVQRH--FQFKAWACVSEDFDVFRVTKSILKSIANDQSN----NDDDLNLL-QEKLK 302 (962)
Q Consensus 230 vi~I~G~~GiGKTtLa~~v~~~~~~~~~--F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~~-~~~l~ 302 (962)
++-|.|++|+||||||.+++... ... =..++|++....++.. .+++++.+..+ ...+.++. .+.+.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~--~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~ 102 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSY--MRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVN 102 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH--HHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH--HhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHH
Confidence 78999999999999998887632 222 2467899988888764 25666654321 23345554 33332
Q ss_pred hH--h-CCceEEEEEecCC
Q 038637 303 KQ--L-SGNKFLLVLDDVW 318 (962)
Q Consensus 303 ~~--l-~~kr~LlVlDdv~ 318 (962)
.. + +++.-+||+|-+.
T Consensus 103 ~l~~i~~~~~~lvVIDSI~ 121 (333)
T 3io5_A 103 QLDAIERGEKVVVFIDSLG 121 (333)
T ss_dssp HHHTCCTTCCEEEEEECST
T ss_pred HHHHhhccCceEEEEeccc
Confidence 22 2 4577899999984
No 245
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.79 E-value=0.028 Score=60.55 Aligned_cols=90 Identities=16% Similarity=0.166 Sum_probs=54.5
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhc----ccceEEEEEeCCCCCHHHHHHHHHHHhccCC-----------CCCC
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQR----HFQFKAWACVSEDFDVFRVTKSILKSIANDQ-----------SNND 291 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~-----------~~~~ 291 (962)
.-.++.|+|++|+||||||..++....... .-..++|++....++..++.. +++.++.+. ....
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g~~~~~~l~~l~~~~~~~~ 199 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFNVDHDAVLDNVLYARAYTS 199 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcCCCHHHHHhceeEeecCCH
Confidence 567999999999999999998876321111 224678999888877766543 344443321 1011
Q ss_pred ccHHHHHHHHHhHhC---CceEEEEEecC
Q 038637 292 DDLNLLQEKLKKQLS---GNKFLLVLDDV 317 (962)
Q Consensus 292 ~~~~~~~~~l~~~l~---~kr~LlVlDdv 317 (962)
.+...+...+...++ .+.-+||+|.+
T Consensus 200 e~~~~ll~~l~~~i~~~~~~~~lvVIDsl 228 (343)
T 1v5w_A 200 EHQMELLDYVAAKFHEEAGIFKLLIIDSI 228 (343)
T ss_dssp THHHHHHHHHHHHHHHSCSSEEEEEEETS
T ss_pred HHHHHHHHHHHHHHHhcCCCccEEEEech
Confidence 222233333444443 45568888887
No 246
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.74 E-value=0.02 Score=61.67 Aligned_cols=85 Identities=24% Similarity=0.171 Sum_probs=54.6
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHhccCCCC----CCccHHHHHHHHH
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSIANDQSN----NDDDLNLLQEKLK 302 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~~~~~l~ 302 (962)
.-+++.|+|++|+||||||.+++... ...=..++|++....++.. ..+.++..... ...+.++..+.++
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~--~~~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANA--QAAGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HhCCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 45789999999999999999887632 2222457899988777653 24444432211 2234555555555
Q ss_pred hHhC-CceEEEEEecCC
Q 038637 303 KQLS-GNKFLLVLDDVW 318 (962)
Q Consensus 303 ~~l~-~kr~LlVlDdv~ 318 (962)
...+ .+.-+||+|.+.
T Consensus 133 ~l~~~~~~~lIVIDsl~ 149 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVA 149 (349)
T ss_dssp HHHTTTCCSEEEEECGG
T ss_pred HHHhcCCCCEEEEcChH
Confidence 5544 345699999983
No 247
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=95.72 E-value=0.021 Score=61.68 Aligned_cols=85 Identities=19% Similarity=0.148 Sum_probs=55.6
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHhccCCCC----CCccHHHHHHHHH
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSIANDQSN----NDDDLNLLQEKLK 302 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~~~~~l~ 302 (962)
.-.++.|.|.+|+||||||..++... ...-..++|++....++.. .++.++.+... ...+.+++.+.+.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~--~~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~ 145 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQA--QKAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIME 145 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHH--HHCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHH
Confidence 34688999999999999998887632 2222368899988877654 23444432210 2234566666666
Q ss_pred hHhCC-ceEEEEEecCC
Q 038637 303 KQLSG-NKFLLVLDDVW 318 (962)
Q Consensus 303 ~~l~~-kr~LlVlDdv~ 318 (962)
...+. ..-+||+|.+.
T Consensus 146 ~l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 146 LLVRSGAIDVVVVDSVA 162 (366)
T ss_dssp HHHTTTCCSEEEEECTT
T ss_pred HHHhcCCCCEEEEeChH
Confidence 65543 44589999983
No 248
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.70 E-value=0.03 Score=63.05 Aligned_cols=176 Identities=16% Similarity=0.142 Sum_probs=88.8
Q ss_pred CCccccchhhHHHHHHHHh---cCCC---CCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHH
Q 038637 200 EAEVYGREKEEEEIVELLL---NDGL---RADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVF 273 (962)
Q Consensus 200 ~~~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~ 273 (962)
-.+++|.+..++++.+... .... -+-.-.+-|.|+|++|+||||||+.++... .. ..+.++.+.-.+
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~--~~---~~i~i~g~~~~~-- 102 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA--RV---PFITASGSDFVE-- 102 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT--TC---CEEEEEGGGGTS--
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--CC---CEEEEehhHHHH--
Confidence 3568999987777765542 1100 000112238999999999999999998732 21 223343322110
Q ss_pred HHHHHHHHHhccCCCCCCccHHHHHHHHHhHhC----CceEEEEEecCCCCC----------ccc----hhhccCCCCCC
Q 038637 274 RVTKSILKSIANDQSNNDDDLNLLQEKLKKQLS----GNKFLLVLDDVWNKN----------YNY----WSILSCPFGAG 335 (962)
Q Consensus 274 ~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~----~kr~LlVlDdv~~~~----------~~~----~~~l~~~l~~~ 335 (962)
. . .......++..++ ....++++|++..-. ... ...+...+...
T Consensus 103 ------------~---~---~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~ 164 (499)
T 2dhr_A 103 ------------M---F---VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF 164 (499)
T ss_dssp ------------S---C---TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGC
T ss_pred ------------h---h---hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccc
Confidence 0 0 0111222333332 235799999994211 011 11222222211
Q ss_pred --CCCcEEEEEecChhhHhh--h---CCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCcchHHHHHHHHHhcCCCh
Q 038637 336 --APGSKIVVTTRNLDVANL--T---RAYPKYGLKELSDDDCLRVVIQHSLGATGFSTNQSLKDVGEKIAKKCKGLP 405 (962)
Q Consensus 336 --~~gs~ilvTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~Lf~~~a~~~~~~~~~~~~~~~~~~I~~~c~glP 405 (962)
..+..|+.||...++... . .-...+.+...+.++-.+++..++-.. ....... ...|+..+.|..
T Consensus 165 ~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~-~l~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 165 EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK-PLAEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp CSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSS-CCCCSST----THHHHTTSCSCC
T ss_pred ccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcC-CCChHHH----HHHHHHhcCCCC
Confidence 233455666666554221 1 123457788888888888887664221 1111111 345677777765
No 249
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.69 E-value=0.039 Score=66.62 Aligned_cols=158 Identities=16% Similarity=0.120 Sum_probs=83.6
Q ss_pred CCccccchhhHHHHHHHHhcC----C---CCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCH
Q 038637 200 EAEVYGREKEEEEIVELLLND----G---LRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDV 272 (962)
Q Consensus 200 ~~~~vGr~~~~~~l~~~L~~~----~---~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~ 272 (962)
-.+++|.+..+++|.+++... . .-.-.....|.|+|++|+||||||+.++.. ....| +.++.+.
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~--l~~~~---i~v~~~~---- 273 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGPE---- 273 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT--TTCEE---EEEEHHH----
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCcE---EEEEchH----
Confidence 356899999999998887530 0 000123457899999999999999999873 32222 3333211
Q ss_pred HHHHHHHHHHhccCCCCCCccHHHHHHHHHhHhCCceEEEEEecCCCCCc-------c----chhhccCCCCC--CCCCc
Q 038637 273 FRVTKSILKSIANDQSNNDDDLNLLQEKLKKQLSGNKFLLVLDDVWNKNY-------N----YWSILSCPFGA--GAPGS 339 (962)
Q Consensus 273 ~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~kr~LlVlDdv~~~~~-------~----~~~~l~~~l~~--~~~gs 339 (962)
+.... .......+...++........++++|++..-.. . ....+...+.. ...+.
T Consensus 274 ----------l~~~~--~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v 341 (806)
T 1ypw_A 274 ----------IMSKL--AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (806)
T ss_dssp ----------HSSSS--TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCC
T ss_pred ----------hhhhh--hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccE
Confidence 11110 111112222333333344678999999832110 0 00111111111 11344
Q ss_pred EEEEEecChh-hHhhhC----CCCcccCCCCCHHHHHHHHHHhh
Q 038637 340 KIVVTTRNLD-VANLTR----AYPKYGLKELSDDDCLRVVIQHS 378 (962)
Q Consensus 340 ~ilvTtR~~~-v~~~~~----~~~~~~l~~L~~~~~~~Lf~~~a 378 (962)
.+|.||.... +..... -...+.+...+.++-.+++...+
T Consensus 342 ~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp EEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred EEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 5666665532 222111 12346788888899889888764
No 250
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.65 E-value=0.0041 Score=61.96 Aligned_cols=114 Identities=9% Similarity=-0.063 Sum_probs=62.7
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHhccCCCC-CCccHHHHHHHHHhHh
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSIANDQSN-NDDDLNLLQEKLKKQL 305 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~-~~~~~~~~~~~l~~~l 305 (962)
.-.++.|+|..|+||||++..+.... ..+-..++.+.-... .. -...++..++..... ......++.+.+.+.+
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~--~~~g~kVli~~~~~d--~r-~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRL--EYADVKYLVFKPKID--TR-SIRNIQSRTGTSLPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHH--HHTTCCEEEEEECCC--GG-GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHH--HhcCCEEEEEEeccC--ch-HHHHHHHhcCCCccccccCCHHHHHHHHHHHh
Confidence 44789999999999999998777632 222223333332222 11 112334444432211 1223445666666666
Q ss_pred CCceE-EEEEecCCCCCccchhhccCCCCCCCCCcEEEEEecCh
Q 038637 306 SGNKF-LLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVVTTRNL 348 (962)
Q Consensus 306 ~~kr~-LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 348 (962)
.+.++ +||+|.+..-+.+..+.+.. +.+ .|..||+|-+..
T Consensus 86 ~~~~~dvViIDEaQ~l~~~~ve~l~~-L~~--~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 86 FNDETKVIGIDEVQFFDDRICEVANI-LAE--NGFVVIISGLDK 126 (223)
T ss_dssp SCTTCCEEEECSGGGSCTHHHHHHHH-HHH--TTCEEEEECCSB
T ss_pred hCCCCCEEEEecCccCcHHHHHHHHH-HHh--CCCeEEEEeccc
Confidence 55545 99999995433233333321 222 377899998863
No 251
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.57 E-value=0.012 Score=57.89 Aligned_cols=43 Identities=26% Similarity=0.321 Sum_probs=34.1
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhC
Q 038637 205 GREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 205 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
.|++.+++|.+.+.... .....+|+|+|+.|+||||+++.+..
T Consensus 2 ~~~~~~~~l~~~~~~~~---~~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIK---TAGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp CHHHHHHHHHHHHHTSC---CSSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhc---cCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 35667788888887542 23568999999999999999998876
No 252
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.55 E-value=0.018 Score=62.06 Aligned_cols=84 Identities=24% Similarity=0.195 Sum_probs=52.9
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHhccCCCC----CCccHHHHHHHHH
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSIANDQSN----NDDDLNLLQEKLK 302 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~~~~~l~ 302 (962)
.-+++.|.|.+|+||||||..++... ...=..++|++....++... ++.++.+... ...+.+++.+.++
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~--~~~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 44689999999999999998887632 22223678999888777542 3444432210 1223455555554
Q ss_pred hHhC-CceEEEEEecC
Q 038637 303 KQLS-GNKFLLVLDDV 317 (962)
Q Consensus 303 ~~l~-~kr~LlVlDdv 317 (962)
...+ .+.-+||+|.+
T Consensus 135 ~l~~~~~~~lVVIDsl 150 (356)
T 1u94_A 135 ALARSGAVDVIVVDSV 150 (356)
T ss_dssp HHHHHTCCSEEEEECG
T ss_pred HHHhccCCCEEEEcCH
Confidence 4432 34458999998
No 253
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.53 E-value=0.024 Score=57.73 Aligned_cols=91 Identities=14% Similarity=0.068 Sum_probs=52.7
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhc----ccceEEEEEeCCCCCHHHHHHHHHHHhccCC-----------CCCC
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQR----HFQFKAWACVSEDFDVFRVTKSILKSIANDQ-----------SNND 291 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~----~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~-----------~~~~ 291 (962)
.-.++.|+|++|+|||||+..++....... .-..++|++....++..++. .+++.++... ....
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCH
Confidence 346899999999999999998876321111 13467888877765555443 3344443221 0011
Q ss_pred ccHHHHHHHHHhHhC-CceEEEEEecCC
Q 038637 292 DDLNLLQEKLKKQLS-GNKFLLVLDDVW 318 (962)
Q Consensus 292 ~~~~~~~~~l~~~l~-~kr~LlVlDdv~ 318 (962)
.+.......+.+.+. .+.-+||+|.+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~~ 129 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSAT 129 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCch
Confidence 111222333444443 467789999883
No 254
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.46 E-value=0.03 Score=59.76 Aligned_cols=90 Identities=18% Similarity=0.190 Sum_probs=54.7
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhcc----cceEEEEEeCCCCCHHHHHHHHHHHhccCCC--------CCCccH
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQRH----FQFKAWACVSEDFDVFRVTKSILKSIANDQS--------NNDDDL 294 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~----F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~--------~~~~~~ 294 (962)
.-.++.|+|++|+||||||..++........ -..++|++....++..++.. +++.++.+.. ....+.
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhCCCHHHHhccEEEEeCCCH
Confidence 3468999999999999999988763211110 24678999888887776653 3455543210 011122
Q ss_pred H---HHHHHHHhHhC--CceEEEEEecC
Q 038637 295 N---LLQEKLKKQLS--GNKFLLVLDDV 317 (962)
Q Consensus 295 ~---~~~~~l~~~l~--~kr~LlVlDdv 317 (962)
+ .+...+...++ .+.-+||+|.+
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl 212 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSV 212 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTT
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCc
Confidence 2 23444444443 45668888887
No 255
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.28 E-value=0.03 Score=59.83 Aligned_cols=90 Identities=19% Similarity=0.227 Sum_probs=54.7
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhc---------cc-----ceEEEEEeCCCCCHHHHHHHHHHHhccCCC----
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQR---------HF-----QFKAWACVSEDFDVFRVTKSILKSIANDQS---- 288 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~---------~F-----~~~~wv~v~~~~~~~~~~~~il~~l~~~~~---- 288 (962)
.-.++.|+|.+|+||||||..++....... .. ..++|++....++..++.. +++.++.+..
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g~~~~~~~~ 175 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAGIDGQTVLD 175 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHTCCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcCCCHHHHhc
Confidence 457999999999999999998875321111 11 4678999888887776654 3455543210
Q ss_pred ----CCCccHH---HHHHHHHhHhC--CceEEEEEecC
Q 038637 289 ----NNDDDLN---LLQEKLKKQLS--GNKFLLVLDDV 317 (962)
Q Consensus 289 ----~~~~~~~---~~~~~l~~~l~--~kr~LlVlDdv 317 (962)
....+.+ .+...+.+.++ .+.-+||+|.+
T Consensus 176 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl 213 (322)
T 2i1q_A 176 NTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSL 213 (322)
T ss_dssp TEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECS
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECc
Confidence 0111222 23344444443 34558888887
No 256
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.23 E-value=0.024 Score=59.62 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
..+.+.++|++|+|||+||+.+++.
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567889999999999999999983
No 257
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.18 E-value=0.078 Score=55.30 Aligned_cols=82 Identities=17% Similarity=0.165 Sum_probs=44.7
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhCccchhc-ccceEEEEEeCCCCCHHHHHHHHHHHh------ccCCCCCCccHHHHH
Q 038637 226 DGFSVISINGMGGVGKTTLAQLVYNDDRVQR-HFQFKAWACVSEDFDVFRVTKSILKSI------ANDQSNNDDDLNLLQ 298 (962)
Q Consensus 226 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~-~F~~~~wv~v~~~~~~~~~~~~il~~l------~~~~~~~~~~~~~~~ 298 (962)
....+|+|+|+.|+||||||+.+........ .......|+...-+-.......+.... .........+...+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l~ 108 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQ 108 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHHHH
Confidence 4678999999999999999998876432211 122334434443332333444443221 111112445666666
Q ss_pred HHHHhHhCC
Q 038637 299 EKLKKQLSG 307 (962)
Q Consensus 299 ~~l~~~l~~ 307 (962)
+.+.....+
T Consensus 109 ~~l~~l~~g 117 (290)
T 1odf_A 109 EVLNTIFNN 117 (290)
T ss_dssp HHHHHHTC-
T ss_pred HHHHHhhcc
Confidence 666665444
No 258
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=94.91 E-value=0.17 Score=54.43 Aligned_cols=157 Identities=11% Similarity=-0.051 Sum_probs=94.8
Q ss_pred cEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCccHHHHHHHHHh-HhC
Q 038637 228 FSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSIANDQSNNDDDLNLLQEKLKK-QLS 306 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~-~l~ 306 (962)
.++..++|+.|.||++.|+.+..... ...|+....+......+ ..++.+.+.. -+-
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~----------------------~~~l~~~~~~~plf 74 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPNTD----------------------WNAIFSLCQAMSLF 74 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTTCC----------------------HHHHHHHHHHHHHC
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCCCC----------------------HHHHHHHhcCcCCc
Confidence 46889999999999999998877321 22343221122222222 3333333321 134
Q ss_pred CceEEEEEecCCC-CCccchhhccCCCCCCCCCcEEEEEecC-------hhhHhhh-CCCCcccCCCCCHHHHHHHHHHh
Q 038637 307 GNKFLLVLDDVWN-KNYNYWSILSCPFGAGAPGSKIVVTTRN-------LDVANLT-RAYPKYGLKELSDDDCLRVVIQH 377 (962)
Q Consensus 307 ~kr~LlVlDdv~~-~~~~~~~~l~~~l~~~~~gs~ilvTtR~-------~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~ 377 (962)
+++-++|+|++.. .+...++.+...+....+++.+|++|-. ..+.... .....++..+++.++....+.+.
T Consensus 75 ~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~ 154 (343)
T 1jr3_D 75 ASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAAR 154 (343)
T ss_dssp CSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHH
Confidence 5667888999865 3445566665555544467777766533 2233332 23456888999999988877776
Q ss_pred hcCCCCCCCCcchHHHHHHHHHhcCCChHHHHHH
Q 038637 378 SLGATGFSTNQSLKDVGEKIAKKCKGLPLAAKTL 411 (962)
Q Consensus 378 a~~~~~~~~~~~~~~~~~~I~~~c~glPLai~~~ 411 (962)
+-.. + -.-..+.+..|++.++|.+..+...
T Consensus 155 ~~~~-g---~~i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 155 AKQL-N---LELDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHHT-T---CEECHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHHc-C---CCCCHHHHHHHHHHhchHHHHHHHH
Confidence 5321 1 1233577888999999998877653
No 259
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.85 E-value=0.012 Score=56.66 Aligned_cols=118 Identities=16% Similarity=0.074 Sum_probs=57.5
Q ss_pred EEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCC---CCCHHHHHHHHHH---HhccCCCCCC-------ccHH
Q 038637 229 SVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSE---DFDVFRVTKSILK---SIANDQSNND-------DDLN 295 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~---~~~~~~~~~~il~---~l~~~~~~~~-------~~~~ 295 (962)
..|-|++..|.||||+|-...- +..++=-.+.++...+ ......++..+-- +.+....-.. ....
T Consensus 29 g~i~v~tG~GkGKTTaA~Glal--RA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAA--RAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACM 106 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHH--HHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH--HHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHH
Confidence 4566677777999999966554 3333322334443322 2223333333200 0000000001 1112
Q ss_pred HHHHHHHhHhCCceE-EEEEecCCC---CCccchhhccCCCCCCCCCcEEEEEecCh
Q 038637 296 LLQEKLKKQLSGNKF-LLVLDDVWN---KNYNYWSILSCPFGAGAPGSKIVVTTRNL 348 (962)
Q Consensus 296 ~~~~~l~~~l~~kr~-LlVlDdv~~---~~~~~~~~l~~~l~~~~~gs~ilvTtR~~ 348 (962)
...+..++.+.+.+| |||||++-. -.....+.+...+........||+|+|..
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 333445666665555 999999821 11122334444444444567899999984
No 260
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.78 E-value=0.02 Score=56.79 Aligned_cols=39 Identities=23% Similarity=0.342 Sum_probs=28.8
Q ss_pred hHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 209 EEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 209 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
-+++|.+.+... .....+|+|+|+.|.|||||++.+..-
T Consensus 7 ~~~~~~~~~~~~----~~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 7 LCQGVLERLDPR----QPGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp HHHHHHHHSCTT----CCSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHhc----CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345555555432 135689999999999999999998763
No 261
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.52 E-value=0.097 Score=52.53 Aligned_cols=47 Identities=19% Similarity=0.145 Sum_probs=31.5
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccch---hc-ccceEEEEEeCCCCCHH
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRV---QR-HFQFKAWACVSEDFDVF 273 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~---~~-~F~~~~wv~v~~~~~~~ 273 (962)
.-.+++|+|+.|+|||||++.++..... .. .-...+|+.-...+...
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~ 74 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPE 74 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHH
Confidence 4579999999999999999998752111 11 12346777765544433
No 262
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.51 E-value=0.044 Score=58.40 Aligned_cols=53 Identities=17% Similarity=-0.016 Sum_probs=34.0
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchh-cccceEEEEEeCCCC
Q 038637 212 EIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQ-RHFQFKAWACVSEDF 270 (962)
Q Consensus 212 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~F~~~~wv~v~~~~ 270 (962)
+.++.+..-. .-..++|+|++|+|||||++.+.+..... ..+. ++++-+++..
T Consensus 163 raID~~~pi~-----rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~ 216 (422)
T 3ice_A 163 RVLDLASPIG-----RGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERP 216 (422)
T ss_dssp HHHHHHSCCB-----TTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCH
T ss_pred eeeeeeeeec-----CCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCCh
Confidence 4556664432 34578999999999999999887632111 1233 3456677654
No 263
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.50 E-value=0.072 Score=55.78 Aligned_cols=87 Identities=14% Similarity=0.080 Sum_probs=44.7
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCC-CCCHHHHHHHHHHHhccCCCCCCccHHHHHHHHHhHh
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSE-DFDVFRVTKSILKSIANDQSNNDDDLNLLQEKLKKQL 305 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~-~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 305 (962)
...++.|+|++|+||||++..++.......- ..+..+.... .....+.+....+..+.+.. ...+...+...+.. +
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G-~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~-~~~~~~~l~~al~~-~ 180 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH-KKIAFITTDTYRIAAVEQLKTYAELLQAPLE-VCYTKEEFQQAKEL-F 180 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC-CCEEEEECCCSSTTHHHHHHHHHTTTTCCCC-BCSSHHHHHHHHHH-G
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CEEEEEecCcccchHHHHHHHHHHhcCCCeE-ecCCHHHHHHHHHH-h
Confidence 4579999999999999999988763221111 1334444332 12233333333333332221 11233444444443 3
Q ss_pred CCceEEEEEecC
Q 038637 306 SGNKFLLVLDDV 317 (962)
Q Consensus 306 ~~kr~LlVlDdv 317 (962)
.+.=++|+|-.
T Consensus 181 -~~~dlvIiDT~ 191 (296)
T 2px0_A 181 -SEYDHVFVDTA 191 (296)
T ss_dssp -GGSSEEEEECC
T ss_pred -cCCCEEEEeCC
Confidence 33447788843
No 264
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=94.28 E-value=0.079 Score=57.02 Aligned_cols=91 Identities=20% Similarity=0.224 Sum_probs=51.6
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhccc----ceEEEEEeCCCCCHHHHHHHHHHHhccCC-----------CCCC
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHF----QFKAWACVSEDFDVFRVTKSILKSIANDQ-----------SNND 291 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F----~~~~wv~v~~~~~~~~~~~~il~~l~~~~-----------~~~~ 291 (962)
.-.++.|+|+.|+|||||+..++......... ..++|++....+...++ ..+.+..+... ....
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i-~~i~q~~~~~~~~v~~ni~~~~~~~~ 208 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERI-REIAQNRGLDPDEVLKHIYVARAFNS 208 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHH-HHHHHTTTCCHHHHGGGEEEEECCSH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHH-HHHHHHcCCCHHHHhhCEEEEecCCh
Confidence 56899999999999999999987632111111 23488887666544433 23444332211 0011
Q ss_pred ccHHHHHHHHHhHhC------CceEEEEEecCC
Q 038637 292 DDLNLLQEKLKKQLS------GNKFLLVLDDVW 318 (962)
Q Consensus 292 ~~~~~~~~~l~~~l~------~kr~LlVlDdv~ 318 (962)
....++...+...+. .+.-+||+|.+-
T Consensus 209 ~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~t 241 (349)
T 1pzn_A 209 NHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 241 (349)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSS
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCEEEEeCch
Confidence 112233344444443 467789999883
No 265
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.23 E-value=0.058 Score=48.61 Aligned_cols=51 Identities=20% Similarity=0.240 Sum_probs=34.9
Q ss_pred EEEeCCCcCcc--cccccccCCCcCCeEeccCCCCcccccc-ccccccCcEEeeCCC
Q 038637 619 VFSLCGYCNIF--NLPNEIGNLKHLRCLNLSRTRIQILPES-INSLYNLHTILLENC 672 (962)
Q Consensus 619 ~L~L~~~~~~~--~lp~~i~~L~~Lr~L~Ls~~~i~~lp~~-i~~L~~L~~L~L~~~ 672 (962)
+++.+++ .++ .+|..+. .+|++|+|++|.|+.+|.. +..+.+|++|+|.+|
T Consensus 12 ~v~Cs~~-~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRR-GLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSS-CCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCC-CCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 5666666 566 6775442 3577888888888877764 456777777777776
No 266
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.19 E-value=0.39 Score=52.81 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhC
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
...+|.++|.+|+||||++..++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~ 122 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLAR 122 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHH
Confidence 578999999999999999887765
No 267
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.18 E-value=0.033 Score=62.79 Aligned_cols=42 Identities=17% Similarity=0.202 Sum_probs=35.5
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 202 EVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 202 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
.++|++..++.+...+... .-|.++|++|+|||+||+.+++.
T Consensus 23 ~ivGq~~~i~~l~~al~~~--------~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--------ESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--------CEEEEECCSSSSHHHHHHHGGGG
T ss_pred hhHHHHHHHHHHHHHHhcC--------CeeEeecCchHHHHHHHHHHHHH
Confidence 3789999998888887654 35789999999999999999884
No 268
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.14 E-value=0.028 Score=54.73 Aligned_cols=25 Identities=32% Similarity=0.507 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
...+++|+|+.|+|||||++.+...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3478999999999999999999873
No 269
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.07 E-value=0.023 Score=54.16 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=20.2
Q ss_pred EEEEEEcCCCchHHHHHHHHhC
Q 038637 229 SVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
.+|.|.|++|+||||+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999976
No 270
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.03 E-value=0.025 Score=54.16 Aligned_cols=20 Identities=50% Similarity=0.795 Sum_probs=18.7
Q ss_pred EEEEEEcCCCchHHHHHHHH
Q 038637 229 SVISINGMGGVGKTTLAQLV 248 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v 248 (962)
.+|.|+|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 271
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.02 E-value=0.049 Score=57.45 Aligned_cols=46 Identities=17% Similarity=0.147 Sum_probs=33.5
Q ss_pred cccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhC
Q 038637 203 VYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 203 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
++|-...+..+...+..... .....+|+|.|+.|+||||||+.+..
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~--~~~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPE--PKVPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCC--CCCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHhccCC--CCCCEEEEEECCCCCCHHHHHHHHHH
Confidence 34555556666555555432 35678999999999999999998865
No 272
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=94.00 E-value=0.035 Score=60.45 Aligned_cols=50 Identities=28% Similarity=0.282 Sum_probs=36.0
Q ss_pred ccccchhhHHHHHHHHhcC-------C--CCCCCCcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 202 EVYGREKEEEEIVELLLND-------G--LRADDGFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 202 ~~vGr~~~~~~l~~~L~~~-------~--~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
.++|.+..++.+...+... . .......+.|.++|++|+|||++|+.+++.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4789999888888877310 0 000123456889999999999999999873
No 273
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=93.95 E-value=0.053 Score=56.62 Aligned_cols=41 Identities=22% Similarity=0.349 Sum_probs=29.2
Q ss_pred hHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhC
Q 038637 209 EEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 209 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
..++++..++.... ......+|.|.|++|+||||+|+.+..
T Consensus 15 ~~~~~~~~~l~~~~-~~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 15 RLNDNLEELIQGKK-AVESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp HHHHHHHHHHTTCC-CCSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred HHHHHHHHHhcccc-CCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 34455555544332 234568999999999999999999976
No 274
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=93.93 E-value=0.026 Score=54.27 Aligned_cols=22 Identities=23% Similarity=0.430 Sum_probs=20.4
Q ss_pred EEEEEEcCCCchHHHHHHHHhC
Q 038637 229 SVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
.+|.|+|++|+||||+|+.+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~ 25 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQS 25 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999986
No 275
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.81 E-value=0.061 Score=57.04 Aligned_cols=45 Identities=24% Similarity=0.309 Sum_probs=32.9
Q ss_pred ccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhC
Q 038637 204 YGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 204 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
|+.+.-.+++++.+..... .+....|.|+|++|+||||+++.++.
T Consensus 2 ~~~~~L~~~il~~l~~~i~--~g~~~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIE--DNYRVCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTT--TCSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhc--cCCeeEEEEECCCCCcHHHHHHHHHH
Confidence 4455666777777643322 23567799999999999999998887
No 276
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.81 E-value=0.029 Score=55.08 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCchHHHHHHHHhC
Q 038637 228 FSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
..+|.|+|++|+||||+|+.+..
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999999986
No 277
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.70 E-value=0.2 Score=53.07 Aligned_cols=52 Identities=12% Similarity=0.068 Sum_probs=36.7
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHH
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKS 282 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~ 282 (962)
.-.++.|.|.+|+||||||..++.+.-..+ ..++|++.. .+..++...++..
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 446899999999999999998876432222 467777655 4566666666654
No 278
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=93.69 E-value=0.12 Score=56.31 Aligned_cols=57 Identities=16% Similarity=0.086 Sum_probs=37.3
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccch----hcccceEEEEEeCCCCCHHHHHHHHHHHhc
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRV----QRHFQFKAWACVSEDFDVFRVTKSILKSIA 284 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~----~~~F~~~~wv~v~~~~~~~~~~~~il~~l~ 284 (962)
.-.++.|+|++|+|||||+..++-.... ...-..++|++....++..++. .+.+.++
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~-~~a~~~g 237 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLV-SIAQRFG 237 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTT
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHH-HHHHHcC
Confidence 4579999999999999999976521111 1123457888877766655543 3555554
No 279
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.68 E-value=0.038 Score=54.29 Aligned_cols=25 Identities=36% Similarity=0.422 Sum_probs=22.3
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
...+|.|+|+.|.||||+|+.+...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4589999999999999999999873
No 280
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=93.67 E-value=0.036 Score=53.30 Aligned_cols=22 Identities=32% Similarity=0.376 Sum_probs=20.3
Q ss_pred EEEEEEcCCCchHHHHHHHHhC
Q 038637 229 SVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5799999999999999999976
No 281
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.65 E-value=0.031 Score=53.87 Aligned_cols=23 Identities=17% Similarity=0.366 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCchHHHHHHHHhC
Q 038637 228 FSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
.++++|+|+.|+|||||++.+..
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~ 27 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLIT 27 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999999876
No 282
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=93.60 E-value=0.059 Score=55.17 Aligned_cols=43 Identities=19% Similarity=0.223 Sum_probs=30.7
Q ss_pred hhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhC
Q 038637 207 EKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 207 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
+...++++..+..... ......+|.|+|++|+||||+|+.+..
T Consensus 12 ~~~~~~~~~~~~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 12 KHALARNLRSLTRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp HHHHHHHHHHHHTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCC-cccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3444555555554432 234568999999999999999999876
No 283
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=93.53 E-value=0.13 Score=51.62 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCchHHHHHHHHhCc
Q 038637 228 FSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
-.++.|+|++|+|||||++.++..
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999998853
No 284
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=93.44 E-value=0.031 Score=53.38 Aligned_cols=22 Identities=27% Similarity=0.366 Sum_probs=20.2
Q ss_pred EEEEEEcCCCchHHHHHHHHhC
Q 038637 229 SVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
.+|+|+|+.|+||||+++.+..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~ 26 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQ 26 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 285
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=93.41 E-value=0.05 Score=52.02 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhC
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
...+|+|+|+.|+||||+|+.+..
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999999876
No 286
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=93.38 E-value=0.074 Score=54.46 Aligned_cols=50 Identities=32% Similarity=0.321 Sum_probs=32.6
Q ss_pred CccccchhhHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 201 AEVYGREKEEEEIVELLLNDGL-------RADDGFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
.+++|.+..+.++.+....-.. .-..... +.|+|++|+||||||+.++..
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g-~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSE-EEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCCCCHHHHHHHHHHH
Confidence 5688988766666544321100 0011123 899999999999999999873
No 287
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.23 E-value=0.046 Score=52.09 Aligned_cols=24 Identities=29% Similarity=0.556 Sum_probs=20.7
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhC
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
...+++|+|+.|+|||||++.++.
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCEEEEEECCCCCCHHHHHHHHcc
Confidence 347899999999999999997654
No 288
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.23 E-value=0.041 Score=53.22 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCchHHHHHHHHhC
Q 038637 228 FSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
.+.|.|+|++|+||||+|+.+..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999976
No 289
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.21 E-value=0.042 Score=53.96 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhC
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
...+|+|+|+.|+|||||++.+..
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999976
No 290
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.14 E-value=0.052 Score=52.83 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhC
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
...+|.|.|++|+||||+|+.+..
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999999976
No 291
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.11 E-value=0.046 Score=54.05 Aligned_cols=25 Identities=36% Similarity=0.557 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
...+|+|+|+.|+|||||++.+...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 4568999999999999999999863
No 292
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.09 E-value=0.047 Score=53.78 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCchHHHHHHHHhC
Q 038637 228 FSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
..+++|+|+.|+|||||++.+..
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~ 29 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVK 29 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHh
Confidence 35899999999999999999876
No 293
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.07 E-value=0.044 Score=53.35 Aligned_cols=23 Identities=30% Similarity=0.414 Sum_probs=20.8
Q ss_pred EEEEEEcCCCchHHHHHHHHhCc
Q 038637 229 SVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
.+|.|.|++|+||||+|+.+...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999873
No 294
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.06 E-value=0.052 Score=53.81 Aligned_cols=24 Identities=46% Similarity=0.389 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhC
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
...+|+|+|+.|+|||||++.+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~ 28 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALAR 28 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999999876
No 295
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.02 E-value=0.051 Score=52.76 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=20.1
Q ss_pred EEEEEEcCCCchHHHHHHHHhC
Q 038637 229 SVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
.+++|+|+.|+|||||++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999974
No 296
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.02 E-value=0.057 Score=53.30 Aligned_cols=25 Identities=36% Similarity=0.452 Sum_probs=22.3
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
...+|+|+|+.|+||||+|+.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4579999999999999999999763
No 297
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.01 E-value=0.041 Score=54.12 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCchHHHHHHHHhC
Q 038637 228 FSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
..+|.|+|+.|+||||+|+.+..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999876
No 298
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=92.98 E-value=0.19 Score=52.70 Aligned_cols=88 Identities=18% Similarity=0.148 Sum_probs=46.6
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHH--HHHHHHHHHhccCC--CCCCccHHHH-HHHH
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVF--RVTKSILKSIANDQ--SNNDDDLNLL-QEKL 301 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~--~~~~~il~~l~~~~--~~~~~~~~~~-~~~l 301 (962)
...+|.|+|++|+||||++..++.... ..=..+.++.. +.+... +-+...++..+.+. .....+...+ .+.+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~--~~g~kV~lv~~-D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al 179 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFV--DEGKSVVLAAA-DTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAV 179 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEE-CTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHH--hcCCEEEEEcc-ccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHH
Confidence 568999999999999999998886332 21122344443 233322 22233444443221 1112233222 3344
Q ss_pred HhHhCCceEEEEEecC
Q 038637 302 KKQLSGNKFLLVLDDV 317 (962)
Q Consensus 302 ~~~l~~kr~LlVlDdv 317 (962)
...+....-++|+|-.
T Consensus 180 ~~a~~~~~dvvIiDtp 195 (306)
T 1vma_A 180 AHALARNKDVVIIDTA 195 (306)
T ss_dssp HHHHHTTCSEEEEEEC
T ss_pred HHHHhcCCCEEEEECC
Confidence 4444444447888865
No 299
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=92.86 E-value=0.052 Score=52.03 Aligned_cols=22 Identities=45% Similarity=0.590 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHhCc
Q 038637 230 VISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 230 vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
.++|+|+.|+|||||++.++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999998764
No 300
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=92.86 E-value=0.22 Score=54.97 Aligned_cols=51 Identities=25% Similarity=0.229 Sum_probs=33.6
Q ss_pred EEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCC-HHHHHHHHH
Q 038637 229 SVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFD-VFRVTKSIL 280 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~-~~~~~~~il 280 (962)
..++|+|.+|+|||||++.+..+... .+-+..+++-+++..+ ..++..++.
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~-~~~~i~V~~~iGerttev~el~~~l~ 203 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQ-EHGGISVFAGVGERTREGNDLYHEMK 203 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHH-HTCCCEEEEEESSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhh-ccCcEEEEeeeccCchHHHHHHHHhh
Confidence 35889999999999999998874322 1224456777777653 334444443
No 301
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.86 E-value=0.04 Score=53.37 Aligned_cols=22 Identities=36% Similarity=0.602 Sum_probs=20.2
Q ss_pred EEEEEEcCCCchHHHHHHHHhC
Q 038637 229 SVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
++++|+|+.|+|||||++.+..
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~ 23 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999986
No 302
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.83 E-value=0.067 Score=52.58 Aligned_cols=25 Identities=36% Similarity=0.403 Sum_probs=22.3
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhC
Q 038637 226 DGFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 226 ~~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
....+|.|.|+.|+||||+|+.+..
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999876
No 303
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=92.81 E-value=0.05 Score=51.62 Aligned_cols=24 Identities=29% Similarity=0.340 Sum_probs=20.8
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhC
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
...+|.|.|+.|+||||+|+.+..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHH
Confidence 567999999999999999999976
No 304
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.81 E-value=0.061 Score=52.81 Aligned_cols=25 Identities=36% Similarity=0.450 Sum_probs=22.6
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhC
Q 038637 226 DGFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 226 ~~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
.+..+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999999976
No 305
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=92.79 E-value=0.066 Score=58.58 Aligned_cols=49 Identities=27% Similarity=0.238 Sum_probs=34.0
Q ss_pred ccccchhhHHHHHHHHhc----CC--------------------CCCCCCcEEEEEEcCCCchHHHHHHHHhC
Q 038637 202 EVYGREKEEEEIVELLLN----DG--------------------LRADDGFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 202 ~~vGr~~~~~~l~~~L~~----~~--------------------~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
.++|.+..++.|...+.. .. .........+.++|++|+|||++|+.+++
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHH
Confidence 477888888888776620 00 00011234688999999999999999987
No 306
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.73 E-value=0.047 Score=52.55 Aligned_cols=23 Identities=39% Similarity=0.556 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCchHHHHHHHHhC
Q 038637 228 FSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
.++|.|+|++|+||||+|+.+..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHH
Confidence 46788999999999999999976
No 307
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.69 E-value=0.058 Score=53.18 Aligned_cols=24 Identities=33% Similarity=0.574 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCchHHHHHHHHhCc
Q 038637 228 FSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
..+|+|+|+.|+||||+++.+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 368999999999999999999763
No 308
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.68 E-value=0.057 Score=50.92 Aligned_cols=25 Identities=28% Similarity=0.295 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
..+++.|+|+.|+|||||+..+...
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4679999999999999999998873
No 309
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=92.67 E-value=0.097 Score=54.43 Aligned_cols=51 Identities=31% Similarity=0.290 Sum_probs=33.6
Q ss_pred CCccccchhhHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 200 EAEVYGREKEEEEIVELLLNDGL-------RADDGFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 200 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
-.+++|.+..++++.+....-.. .-..... +.|+|++|+||||||+.++..
T Consensus 39 ~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~g-vll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 39 FKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp GGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCE-EEEECCTTSSHHHHHHHHHHH
T ss_pred HHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCe-EEEECCCcChHHHHHHHHHHH
Confidence 35688988777666554321100 0001123 899999999999999999873
No 310
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=92.66 E-value=0.041 Score=59.51 Aligned_cols=45 Identities=18% Similarity=0.279 Sum_probs=32.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
..++|.+..++.+...+.... ..-|.|+|++|+|||++|+.+++.
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~------~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG------IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG------GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCCC------CceEEEECCCCccHHHHHHHHHHh
Confidence 458999886666544443221 123889999999999999999873
No 311
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.65 E-value=0.063 Score=54.92 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=22.0
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhC
Q 038637 226 DGFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 226 ~~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
....+|+|.|+.|+||||+|+.+..
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 3567999999999999999999876
No 312
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=92.61 E-value=0.061 Score=53.23 Aligned_cols=26 Identities=27% Similarity=0.256 Sum_probs=23.2
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 226 DGFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 226 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
.+.++|.|.|++|+||||.|+.++..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46799999999999999999999863
No 313
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.57 E-value=0.064 Score=52.88 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=20.3
Q ss_pred EEEEEEcCCCchHHHHHHHHhC
Q 038637 229 SVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
.+|+|+|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999975
No 314
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.57 E-value=0.062 Score=51.89 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=21.3
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhC
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
....|.|+|+.|+||||+|+.+..
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999876
No 315
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.57 E-value=0.31 Score=51.66 Aligned_cols=53 Identities=15% Similarity=0.053 Sum_probs=36.2
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHh
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSI 283 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l 283 (962)
.-.++.|.|.+|+||||+|..++.+.-. +=..++|++. .-+..++...++...
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSl--Ems~~ql~~Rlls~~ 97 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSL--EMSAEQLALRALSDL 97 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEES--SSCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeC--CCCHHHHHHHHHHHh
Confidence 3468899999999999999988774322 2234556654 445677777776554
No 316
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=92.57 E-value=0.061 Score=55.00 Aligned_cols=22 Identities=27% Similarity=0.209 Sum_probs=20.3
Q ss_pred EEEEEEcCCCchHHHHHHHHhC
Q 038637 229 SVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
.+|.|+|+.|+||||||+.++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 5789999999999999999976
No 317
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.55 E-value=0.052 Score=53.51 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhC
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
...+|.|+|++|+||||+++.+..
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~ 34 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLS 34 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999976
No 318
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=92.48 E-value=0.061 Score=52.23 Aligned_cols=22 Identities=41% Similarity=0.687 Sum_probs=20.4
Q ss_pred EEEEEEcCCCchHHHHHHHHhC
Q 038637 229 SVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
.+|.|.|++|+||||+|+.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 319
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.44 E-value=0.53 Score=51.98 Aligned_cols=43 Identities=23% Similarity=0.241 Sum_probs=29.8
Q ss_pred hHHHHHHHHhcCCC---CCCCCcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 209 EEEEIVELLLNDGL---RADDGFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 209 ~~~~l~~~L~~~~~---~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
-.+++.+.|..... ......++|.|+|.+|+||||++..++..
T Consensus 78 ~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~ 123 (433)
T 2xxa_A 78 VRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKF 123 (433)
T ss_dssp HHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34566666643211 01235789999999999999999888763
No 320
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=92.42 E-value=0.39 Score=52.86 Aligned_cols=65 Identities=26% Similarity=0.296 Sum_probs=44.0
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCC-HHHHHHHHHHH
Q 038637 212 EIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFD-VFRVTKSILKS 282 (962)
Q Consensus 212 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~-~~~~~~~il~~ 282 (962)
+.++.|..-. +-.-++|+|.+|+|||+|++++.+.. .+.+-+..+++-+++... ..++.+++.+.
T Consensus 142 r~ID~l~pig-----kGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPYA-----KGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCEE-----TTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEecccccc-----cCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 3566665432 33567999999999999999987742 223445677888887653 45666666654
No 321
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.41 E-value=0.07 Score=51.96 Aligned_cols=23 Identities=26% Similarity=0.244 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCchHHHHHHHHhC
Q 038637 228 FSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
..+|.|.|++|+||||+|+.+..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999998876
No 322
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.40 E-value=0.05 Score=53.31 Aligned_cols=22 Identities=27% Similarity=0.587 Sum_probs=20.2
Q ss_pred EEEEEEcCCCchHHHHHHHHhC
Q 038637 229 SVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
++++|+|+.|+|||||++.+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 5789999999999999999876
No 323
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.38 E-value=0.071 Score=54.81 Aligned_cols=24 Identities=29% Similarity=0.565 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhC
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
...+|.|+|++|+||||+|+.+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 357899999999999999999986
No 324
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.36 E-value=0.063 Score=52.81 Aligned_cols=22 Identities=36% Similarity=0.531 Sum_probs=20.0
Q ss_pred EEEEEEcCCCchHHHHHHHHhC
Q 038637 229 SVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3789999999999999999875
No 325
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=92.35 E-value=0.066 Score=52.19 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=21.3
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhC
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
...+|.|.|++|+||||+|+.+..
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999976
No 326
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=92.33 E-value=0.074 Score=56.11 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=22.4
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhC
Q 038637 226 DGFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 226 ~~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
....+|+|+|+.|+|||||++.+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 3568999999999999999999876
No 327
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=92.33 E-value=0.064 Score=53.80 Aligned_cols=22 Identities=41% Similarity=0.653 Sum_probs=20.3
Q ss_pred EEEEEEcCCCchHHHHHHHHhC
Q 038637 229 SVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
.+|+|+|+.|+||||+|+.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999876
No 328
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=92.31 E-value=0.065 Score=54.61 Aligned_cols=23 Identities=30% Similarity=0.304 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCchHHHHHHHHhC
Q 038637 228 FSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
..+|+|+|+.|+|||||++.+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999984
No 329
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.30 E-value=0.089 Score=50.87 Aligned_cols=25 Identities=32% Similarity=0.367 Sum_probs=22.3
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
...+|.|+|++|+||||+++.+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999873
No 330
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.28 E-value=0.059 Score=52.97 Aligned_cols=21 Identities=33% Similarity=0.483 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHhC
Q 038637 230 VISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 230 vi~I~G~~GiGKTtLa~~v~~ 250 (962)
.|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999986
No 331
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=92.26 E-value=0.08 Score=53.89 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhC
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
...+|+|+|+.|+|||||++.+..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 447999999999999999998876
No 332
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.22 E-value=0.18 Score=48.81 Aligned_cols=86 Identities=19% Similarity=0.186 Sum_probs=48.4
Q ss_pred hhCCCCcccEEEeCCCcCccc-----ccccccCCCcCCeEeccCCCCc-----cccccccccccCcEEeeCCCcccc---
Q 038637 610 LLNHLPRLRVFSLCGYCNIFN-----LPNEIGNLKHLRCLNLSRTRIQ-----ILPESINSLYNLHTILLENCWELK--- 676 (962)
Q Consensus 610 ~l~~l~~Lr~L~L~~~~~~~~-----lp~~i~~L~~Lr~L~Ls~~~i~-----~lp~~i~~L~~L~~L~L~~~~~l~--- 676 (962)
++.+-+.|+.|+|+++..+.. +-+.+..-.+|+.|+|++|.|. .+-+.+..-..|++|+|++| .++
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~G 114 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESN-FLTPEL 114 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCC-cCCHHH
Confidence 345556677777776423332 2344555567777777777766 33344445566777777776 332
Q ss_pred --ccchhcccCCCccEEecCCC
Q 038637 677 --KLCKDMGNLTKLRHLRNSDA 696 (962)
Q Consensus 677 --~lp~~i~~L~~L~~L~l~~~ 696 (962)
.+-..+..-+.|++|+++++
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHHhhCCceeEEECCCC
Confidence 22333444455666666543
No 333
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=92.22 E-value=0.39 Score=52.75 Aligned_cols=25 Identities=32% Similarity=0.197 Sum_probs=22.3
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
...+|.++|++|+||||++..++..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999888763
No 334
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.16 E-value=0.09 Score=49.18 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhC
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
.-.+++|+|+.|.|||||++.++.
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 347999999999999999999876
No 335
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.15 E-value=0.073 Score=51.65 Aligned_cols=24 Identities=21% Similarity=0.511 Sum_probs=21.4
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhC
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
..++|+|+|+.|+|||||++.+..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~ 41 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLS 41 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHh
Confidence 457899999999999999999876
No 336
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.12 E-value=0.1 Score=52.93 Aligned_cols=24 Identities=21% Similarity=0.062 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhC
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
....|.|.|++|+||||+|+.+..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999976
No 337
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.11 E-value=0.068 Score=51.10 Aligned_cols=22 Identities=36% Similarity=0.460 Sum_probs=19.9
Q ss_pred EEEEEEcCCCchHHHHHHHHhC
Q 038637 229 SVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
+.|.|+|++|+||||+|+.+..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3689999999999999999976
No 338
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.06 E-value=0.082 Score=51.05 Aligned_cols=23 Identities=26% Similarity=0.205 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCchHHHHHHHHhC
Q 038637 228 FSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
...|.|+|++|+||||+|+.+..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999976
No 339
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=92.06 E-value=0.055 Score=52.25 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=19.9
Q ss_pred EEEEEEcCCCchHHHHHHHHhC
Q 038637 229 SVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
.+|.|+|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999976
No 340
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.02 E-value=0.076 Score=52.41 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=21.3
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhC
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
.-.+++|+|+.|+|||||++.+..
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~g 42 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRE 42 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 346899999999999999999876
No 341
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=91.91 E-value=0.09 Score=52.00 Aligned_cols=23 Identities=30% Similarity=0.536 Sum_probs=21.1
Q ss_pred EEEEEEcCCCchHHHHHHHHhCc
Q 038637 229 SVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
.+|.|.|++|+||||+|+.+...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 68999999999999999999873
No 342
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.91 E-value=0.17 Score=53.41 Aligned_cols=25 Identities=36% Similarity=0.352 Sum_probs=22.3
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhC
Q 038637 226 DGFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 226 ~~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
....+|+|+|+.|+|||||++.+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3558999999999999999998876
No 343
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=91.90 E-value=0.1 Score=50.58 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCchHHHHHHHHhC
Q 038637 228 FSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
..+|.|.|++|+||||+|+.+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999876
No 344
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=91.90 E-value=0.3 Score=53.54 Aligned_cols=24 Identities=29% Similarity=0.236 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCchHHHHHHHHhCc
Q 038637 228 FSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
..+|.|+|.+|+||||++..++..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999888763
No 345
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=91.88 E-value=0.091 Score=51.54 Aligned_cols=24 Identities=25% Similarity=0.223 Sum_probs=21.2
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhC
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
...+|.|+|++|+||||+|+.+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999876
No 346
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=91.81 E-value=0.066 Score=51.52 Aligned_cols=22 Identities=36% Similarity=0.602 Sum_probs=19.4
Q ss_pred EEEEEEcCCCchHHHHHHHHhC
Q 038637 229 SVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
|.|.|+|++|+|||||++++..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3478999999999999999875
No 347
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=91.81 E-value=0.55 Score=49.70 Aligned_cols=25 Identities=36% Similarity=0.279 Sum_probs=22.4
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
...+++|+|+.|+||||+++.++.-
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5689999999999999999998863
No 348
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=91.78 E-value=0.091 Score=55.16 Aligned_cols=24 Identities=33% Similarity=0.361 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhC
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
...+++|+|++|+||||+++.++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 457999999999999999999876
No 349
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=91.77 E-value=0.066 Score=50.98 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=20.0
Q ss_pred EEEEEEcCCCchHHHHHHHHhC
Q 038637 229 SVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
.+|.|+|+.|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999976
No 350
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=91.74 E-value=0.08 Score=51.76 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=20.5
Q ss_pred EEEEEEcCCCchHHHHHHHHhC
Q 038637 229 SVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
.+|.|.|++|+||||+|+.+..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999976
No 351
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.73 E-value=0.071 Score=53.10 Aligned_cols=23 Identities=39% Similarity=0.512 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCchHHHHHHHHhC
Q 038637 228 FSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
-.+++|+|+.|+|||||++.+..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g 45 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLN 45 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 36899999999999999999876
No 352
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=91.67 E-value=0.086 Score=51.16 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=22.4
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhC
Q 038637 226 DGFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 226 ~~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
....+|+|+|+.|+||||+|+.+..
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~ 34 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKN 34 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHH
Confidence 3568999999999999999999876
No 353
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=91.66 E-value=0.06 Score=51.87 Aligned_cols=23 Identities=43% Similarity=0.460 Sum_probs=16.8
Q ss_pred cEEEEEEcCCCchHHHHHHHHhC
Q 038637 228 FSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
..+|.|.|++|+||||+|+.+..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999875
No 354
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=91.64 E-value=0.13 Score=56.56 Aligned_cols=50 Identities=26% Similarity=0.323 Sum_probs=36.0
Q ss_pred CccccchhhHHHHHHHHhcC--------CCCCCCCcEEEEEEcCCCchHHHHHHHHhC
Q 038637 201 AEVYGREKEEEEIVELLLND--------GLRADDGFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
..++|.+..++.|...+... ........+-|.++|++|+||||+|+.++.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~ 72 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHH
Confidence 45889998888887766321 000011345688999999999999999987
No 355
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=91.61 E-value=0.081 Score=50.10 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHhC
Q 038637 230 VISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 230 vi~I~G~~GiGKTtLa~~v~~ 250 (962)
.|.|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999976
No 356
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=91.59 E-value=0.21 Score=44.87 Aligned_cols=54 Identities=17% Similarity=0.239 Sum_probs=45.4
Q ss_pred CeEeccCCCCc--cccccccccccCcEEeeCCCccccccchh-cccCCCccEEecCCCCC
Q 038637 642 RCLNLSRTRIQ--ILPESINSLYNLHTILLENCWELKKLCKD-MGNLTKLRHLRNSDAGL 698 (962)
Q Consensus 642 r~L~Ls~~~i~--~lp~~i~~L~~L~~L~L~~~~~l~~lp~~-i~~L~~L~~L~l~~~~~ 698 (962)
..++.+++.++ .+|..+. .+|++|+|++| .+..+|.. +..+++|+.|+|.+|..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCC-cCCccChhhhhhccccCEEEecCCCe
Confidence 47889999998 9997653 57999999999 78888765 57899999999999873
No 357
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=91.58 E-value=0.091 Score=53.70 Aligned_cols=23 Identities=35% Similarity=0.582 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCchHHHHHHHHhC
Q 038637 228 FSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
..+|+|+|+.|+||||+++.+..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999985
No 358
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.57 E-value=0.09 Score=52.27 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhC
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
.-.+++|+|+.|+|||||.+.+..
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g 38 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLK 38 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 456899999999999999999876
No 359
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=91.57 E-value=0.11 Score=49.91 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=21.4
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhC
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
...+|.|+|+.|+||||+++.+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999976
No 360
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=91.55 E-value=0.096 Score=55.75 Aligned_cols=52 Identities=17% Similarity=0.086 Sum_probs=34.1
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchh-cccceEEEEEeCCC
Q 038637 212 EIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQ-RHFQFKAWACVSED 269 (962)
Q Consensus 212 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~-~~F~~~~wv~v~~~ 269 (962)
++++.|..-. +-.-++|+|.+|+|||+|++++.+..... ..+. ++++-+++.
T Consensus 164 raID~l~Pig-----rGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~-~V~~lIGER 216 (427)
T 3l0o_A 164 RLIDLFAPIG-----KGQRGMIVAPPKAGKTTILKEIANGIAENHPDTI-RIILLIDER 216 (427)
T ss_dssp HHHHHHSCCB-----TTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSE-EEEEECSCC
T ss_pred hhhhhccccc-----CCceEEEecCCCCChhHHHHHHHHHHhhcCCCeE-EEEEEeccC
Confidence 5677775432 33567999999999999999988742211 1233 245666654
No 361
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=91.52 E-value=0.11 Score=54.14 Aligned_cols=24 Identities=33% Similarity=0.686 Sum_probs=21.7
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHh
Q 038637 226 DGFSVISINGMGGVGKTTLAQLVY 249 (962)
Q Consensus 226 ~~~~vi~I~G~~GiGKTtLa~~v~ 249 (962)
....+|+|+|+.|+||||+|+.+.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 356899999999999999999987
No 362
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.52 E-value=0.23 Score=64.46 Aligned_cols=84 Identities=24% Similarity=0.197 Sum_probs=55.3
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHhccCCCC----CCccHHHHHHHHH
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSIANDQSN----NDDDLNLLQEKLK 302 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~~~~~l~ 302 (962)
..++|.|+|++|+|||+||.++... ...+=..++|+++...++... ++.++.+... .....++....++
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~e--a~~~G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAA--AQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHH--HHTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH--HHHcCCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 4679999999999999999988773 222323577888888777665 3444422111 2223345555555
Q ss_pred hHhC-CceEEEEEecC
Q 038637 303 KQLS-GNKFLLVLDDV 317 (962)
Q Consensus 303 ~~l~-~kr~LlVlDdv 317 (962)
...+ .+.-+||+|.+
T Consensus 1499 ~lvr~~~~~lVVIDsi 1514 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSV 1514 (2050)
T ss_dssp HHHHHTCCSEEEESCG
T ss_pred HHHhcCCCCEEEEcCh
Confidence 5443 46679999998
No 363
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.49 E-value=0.068 Score=50.74 Aligned_cols=23 Identities=35% Similarity=0.375 Sum_probs=20.8
Q ss_pred EEEEEEcCCCchHHHHHHHHhCc
Q 038637 229 SVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
++++|+|..|+|||||++.+..-
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998764
No 364
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=91.46 E-value=0.084 Score=51.34 Aligned_cols=21 Identities=43% Similarity=0.779 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHhC
Q 038637 230 VISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 230 vi~I~G~~GiGKTtLa~~v~~ 250 (962)
+|+|.|+.|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999987
No 365
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=91.43 E-value=0.42 Score=52.80 Aligned_cols=64 Identities=25% Similarity=0.201 Sum_probs=44.3
Q ss_pred HHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCC-HHHHHHHHHHH
Q 038637 213 IVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFD-VFRVTKSILKS 282 (962)
Q Consensus 213 l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~-~~~~~~~il~~ 282 (962)
.++.|..-. +-.-++|.|.+|+|||+|+.++.++. .+.+-+..+++-+++... ..++.+++.+.
T Consensus 155 vID~l~pig-----kGqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 219 (498)
T 1fx0_B 155 VVNLLAPYR-----RGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKES 219 (498)
T ss_dssp THHHHSCCC-----TTCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHHT
T ss_pred Eeeeecccc-----cCCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhcc
Confidence 556665432 33567999999999999999888742 223456788888888764 55666666543
No 366
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.40 E-value=0.18 Score=50.33 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
....|.|+|.+|+|||||+..+...
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4688999999999999999988764
No 367
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=91.39 E-value=0.13 Score=49.78 Aligned_cols=37 Identities=11% Similarity=0.081 Sum_probs=27.0
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 210 EEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 210 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
+..+..++... ++...+.|+|++|+||||+|..+++.
T Consensus 45 ~~~l~~~~~~i-----Pkkn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 45 LGALKSFLKGT-----PKKNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp HHHHHHHHHTC-----TTCSEEEEESCGGGCHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-----CcccEEEEECCCCCCHHHHHHHHHHH
Confidence 45566666431 23456899999999999999888873
No 368
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=91.37 E-value=0.097 Score=52.21 Aligned_cols=23 Identities=26% Similarity=0.205 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCchHHHHHHHHhC
Q 038637 228 FSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
...|.|.|++|+||||+|+.+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999976
No 369
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.26 E-value=0.1 Score=51.63 Aligned_cols=24 Identities=21% Similarity=0.360 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCchHHHHHHHHhCc
Q 038637 228 FSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
..+|.|.|+.|+||||+|+.+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999873
No 370
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.20 E-value=0.1 Score=51.59 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCchHHHHHHHHhCc
Q 038637 228 FSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
..+|.|.|+.|+||||+|+.+...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999873
No 371
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=91.18 E-value=0.12 Score=54.66 Aligned_cols=25 Identities=32% Similarity=0.581 Sum_probs=20.6
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhC
Q 038637 226 DGFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 226 ~~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
++.+||+|.|-|||||||.|-.+..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~ 70 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSA 70 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHH
Confidence 3679999999999999998865544
No 372
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=91.10 E-value=0.27 Score=54.40 Aligned_cols=94 Identities=21% Similarity=0.242 Sum_probs=54.6
Q ss_pred HHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHH-HHHhCccchhcccc-eEEEEEeCCCCC-HHHHHHHHHHHhccC---
Q 038637 213 IVELLLNDGLRADDGFSVISINGMGGVGKTTLA-QLVYNDDRVQRHFQ-FKAWACVSEDFD-VFRVTKSILKSIAND--- 286 (962)
Q Consensus 213 l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~F~-~~~wv~v~~~~~-~~~~~~~il~~l~~~--- 286 (962)
.++.|..-. +-.-++|+|.+|+|||+|| ..+.+.. +-+ ..+++-+++... ..++.+++.+.=...
T Consensus 152 aID~l~Pig-----rGQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~~tv 222 (502)
T 2qe7_A 152 AIDSMIPIG-----RGQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALDYTI 222 (502)
T ss_dssp HHHHSSCCB-----TTCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCSTTEE
T ss_pred ecccccccc-----cCCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcceeE
Confidence 566664432 3345699999999999995 5777742 234 346777887653 445555554421111
Q ss_pred ----CCCCCccHH--------HHHHHHHhHhCCceEEEEEecC
Q 038637 287 ----QSNNDDDLN--------LLQEKLKKQLSGNKFLLVLDDV 317 (962)
Q Consensus 287 ----~~~~~~~~~--------~~~~~l~~~l~~kr~LlVlDdv 317 (962)
..+...... .+.+.+++ +++.+|+++||+
T Consensus 223 vV~atad~p~~~r~~a~~~a~tiAEyfrd--~G~dVLl~~Dsl 263 (502)
T 2qe7_A 223 VVTASASEPAPLLYLAPYAGCAMGEYFMY--KGKHALVVYDDL 263 (502)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEECH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHH--cCCcEEEEEecH
Confidence 110111111 22333444 589999999998
No 373
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.10 E-value=0.1 Score=52.41 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=20.9
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhC
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
....|.|.|++|+||||+|+.+..
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999999976
No 374
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=91.03 E-value=0.51 Score=49.25 Aligned_cols=24 Identities=29% Similarity=0.236 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCchHHHHHHHHhCc
Q 038637 228 FSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
..+++|+|.+|+||||++..++..
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999988863
No 375
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=90.99 E-value=0.1 Score=50.92 Aligned_cols=22 Identities=36% Similarity=0.575 Sum_probs=19.9
Q ss_pred EEEEEcCCCchHHHHHHHHhCc
Q 038637 230 VISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 230 vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
.|+|.|+.|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999873
No 376
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=90.88 E-value=0.099 Score=50.58 Aligned_cols=22 Identities=36% Similarity=0.418 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHhCc
Q 038637 230 VISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 230 vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
+++|+|+.|+|||||++.++..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999998874
No 377
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=90.79 E-value=0.11 Score=51.07 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.9
Q ss_pred EEEEEEcCCCchHHHHHHHHhCc
Q 038637 229 SVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
..|.|.|+.|+||||+++.+...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999999873
No 378
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=90.78 E-value=0.12 Score=51.33 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=19.0
Q ss_pred EEEEEcCCCchHHHHHHHHhC
Q 038637 230 VISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 230 vi~I~G~~GiGKTtLa~~v~~ 250 (962)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999876
No 379
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=90.77 E-value=0.14 Score=50.61 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
...+|.|+|+.|+||||+|+.+...
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3478999999999999999998763
No 380
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=90.76 E-value=0.07 Score=52.93 Aligned_cols=22 Identities=36% Similarity=0.646 Sum_probs=19.9
Q ss_pred EEEEEcCCCchHHHHHHHHhCc
Q 038637 230 VISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 230 vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
+|+|.|+.|+||||+|+.+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999998763
No 381
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=90.75 E-value=0.12 Score=52.06 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCchHHHHHHHHhC
Q 038637 228 FSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
-.+++|+|+.|+|||||.+.+..
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~G 53 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGC 53 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 36899999999999999999986
No 382
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=90.74 E-value=0.1 Score=52.04 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=21.1
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhC
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
....|.|.|++|+||||+|+.+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345789999999999999999976
No 383
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=90.72 E-value=0.12 Score=52.25 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=20.8
Q ss_pred EEEEEEcCCCchHHHHHHHHhC
Q 038637 229 SVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
.+++|+|+.|.|||||.+.+..
T Consensus 25 e~~~liG~nGsGKSTLl~~l~G 46 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAG 46 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 7899999999999999999986
No 384
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=90.67 E-value=0.15 Score=50.76 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=20.6
Q ss_pred cEEEEEEcCCCchHHHHHHHHhC
Q 038637 228 FSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
..+|+|+|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999864
No 385
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=90.64 E-value=0.23 Score=53.53 Aligned_cols=37 Identities=27% Similarity=0.395 Sum_probs=27.8
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhC
Q 038637 210 EEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 210 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
..++.+.+.... .+..+|+|+|.+|+|||||+..+..
T Consensus 65 ~~~~~~~~~~~~----~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 65 AQQLLLRLLPDS----GNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp HHHHHHHHGGGC----CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHHHHhHhhc----CCceEEEEECCCCCCHHHHHHHHHH
Confidence 445555554332 3678999999999999999988865
No 386
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=90.63 E-value=0.17 Score=50.42 Aligned_cols=41 Identities=27% Similarity=0.295 Sum_probs=29.8
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 205 GREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 205 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
+.++..+++...+.. ...++|.|+|.+|+|||||+..+...
T Consensus 13 ~~~~~~~~~~~~~~~------~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 13 ENKRLAEKNREALRE------SGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHHH------HTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhcc------cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 444455555555532 25689999999999999999988764
No 387
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=90.62 E-value=0.14 Score=53.70 Aligned_cols=25 Identities=36% Similarity=0.332 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
...+++|+|+.|+||||+++.++.-
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4579999999999999999998863
No 388
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=90.61 E-value=0.12 Score=51.58 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=20.6
Q ss_pred EEEEEEcCCCchHHHHHHHHhC
Q 038637 229 SVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
.+++|+|+.|+|||||.+.++.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~G 52 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGL 52 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999986
No 389
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.55 E-value=0.13 Score=51.09 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=18.9
Q ss_pred EEEEEcCCCchHHHHHHHHhC
Q 038637 230 VISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 230 vi~I~G~~GiGKTtLa~~v~~ 250 (962)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999875
No 390
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.54 E-value=0.12 Score=52.49 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=21.2
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhC
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
.-.+++|+|+.|+|||||++.++.
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHH
Confidence 346899999999999999998874
No 391
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=90.49 E-value=0.086 Score=53.08 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=16.4
Q ss_pred cEEEEEEcCCCchHHHHHHHHh-C
Q 038637 228 FSVISINGMGGVGKTTLAQLVY-N 250 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~-~ 250 (962)
..+++|+|+.|+|||||++.+. .
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~ 50 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEK 50 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC-
T ss_pred CCEEEEECCCCCCHHHHHHHHHhc
Confidence 3689999999999999999998 5
No 392
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=90.48 E-value=0.75 Score=47.93 Aligned_cols=24 Identities=38% Similarity=0.296 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCchHHHHHHHHhCc
Q 038637 228 FSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
..++.++|.+|+||||++..++..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~ 121 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF 121 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999888763
No 393
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=90.47 E-value=1.3 Score=49.67 Aligned_cols=41 Identities=27% Similarity=0.252 Sum_probs=27.3
Q ss_pred HHHHHHHHhcCCCC---CCCCcEEEEEEcCCCchHHHHHHHHhC
Q 038637 210 EEEIVELLLNDGLR---ADDGFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 210 ~~~l~~~L~~~~~~---~~~~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
.++|.+.+...... .....++|.|+|.+|+||||++..+..
T Consensus 80 ~~eL~~ll~~~~~~~~~~~~~~~vI~ivG~~GvGKTTl~~kLA~ 123 (504)
T 2j37_W 80 FKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAY 123 (504)
T ss_dssp HHHHHHHHCCCCCCCCCCSS--EEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHhccccchhccccCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 44555655432210 124578999999999999999988875
No 394
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=90.45 E-value=0.56 Score=52.48 Aligned_cols=51 Identities=16% Similarity=0.114 Sum_probs=34.1
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHH
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSIL 280 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il 280 (962)
.-.++.|.|.+|+||||||..++.+.... .=..++|++... +..++...++
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~-~g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATK-TNENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHH-SSCCEEEEESSS--CHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh-CCCcEEEEECCC--CHHHHHHHHH
Confidence 34689999999999999999988743221 112466776543 4456665554
No 395
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=90.39 E-value=0.14 Score=48.77 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
..+++.|+|+.|+|||||++.+...
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 3578999999999999999998863
No 396
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=90.36 E-value=0.2 Score=48.46 Aligned_cols=25 Identities=36% Similarity=0.361 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
....|.|+|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999998764
No 397
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=90.29 E-value=0.11 Score=52.78 Aligned_cols=22 Identities=32% Similarity=0.517 Sum_probs=20.4
Q ss_pred EEEEEEcCCCchHHHHHHHHhC
Q 038637 229 SVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
.+|.|+|+.|+||||+++.+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999976
No 398
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=90.13 E-value=0.44 Score=52.75 Aligned_cols=94 Identities=19% Similarity=0.239 Sum_probs=54.7
Q ss_pred HHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHH-HHHhCccchhcccce-EEEEEeCCCCC-HHHHHHHHHHHhcc----
Q 038637 213 IVELLLNDGLRADDGFSVISINGMGGVGKTTLA-QLVYNDDRVQRHFQF-KAWACVSEDFD-VFRVTKSILKSIAN---- 285 (962)
Q Consensus 213 l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~F~~-~~wv~v~~~~~-~~~~~~~il~~l~~---- 285 (962)
.++.|..-. +-.-++|+|.+|+|||+|| ..+.+.. .-+. .+++-+++... ..++.+++.+.=..
T Consensus 165 aID~l~Pig-----rGQR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~rtv 235 (515)
T 2r9v_A 165 AIDSMIPIG-----RGQRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAMEYTT 235 (515)
T ss_dssp HHHHHSCEE-----TTCBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGGGEE
T ss_pred ccccccccc-----cCCEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcceeE
Confidence 556664432 2345799999999999995 5787742 2343 46777887653 44555555442111
Q ss_pred ---CCCCCCccHH--------HHHHHHHhHhCCceEEEEEecC
Q 038637 286 ---DQSNNDDDLN--------LLQEKLKKQLSGNKFLLVLDDV 317 (962)
Q Consensus 286 ---~~~~~~~~~~--------~~~~~l~~~l~~kr~LlVlDdv 317 (962)
...+...... ...+.+++ +++.+||++||+
T Consensus 236 vV~atad~p~~~r~~a~~~a~tiAEyfrd--~G~dVLli~Dsl 276 (515)
T 2r9v_A 236 VVVASASDPASLQYIAPYAGCAMGEYFAY--SGRDALVVYDDL 276 (515)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETH
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHH--cCCcEEEEeccH
Confidence 1111111111 22333443 589999999998
No 399
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.12 E-value=0.14 Score=52.74 Aligned_cols=23 Identities=43% Similarity=0.403 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCchHHHHHHHHhC
Q 038637 228 FSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
-.+++|+|+.|+|||||++.+..
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHc
Confidence 36899999999999999999976
No 400
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=90.09 E-value=0.73 Score=52.33 Aligned_cols=54 Identities=15% Similarity=0.037 Sum_probs=36.7
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHh
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSI 283 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l 283 (962)
.-.++.|.|.+|+||||||..++.+.-.. +=..++|++... +..++...++...
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~--s~~~l~~r~~~~~ 294 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEE--SVEETAEDLIGLH 294 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSS--CHHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccC--CHHHHHHHHHHHH
Confidence 44688999999999999998887642211 112566776544 4667777766544
No 401
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=90.05 E-value=0.16 Score=51.27 Aligned_cols=24 Identities=21% Similarity=0.425 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCchHHHHHHHHhCc
Q 038637 228 FSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
-.+++|+|+.|.|||||++.+..-
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999999863
No 402
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=90.02 E-value=0.16 Score=53.72 Aligned_cols=22 Identities=36% Similarity=0.320 Sum_probs=20.5
Q ss_pred EEEEEEcCCCchHHHHHHHHhC
Q 038637 229 SVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
.+|+|.|+.|+||||||..++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 5899999999999999999876
No 403
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=90.01 E-value=0.15 Score=50.87 Aligned_cols=23 Identities=22% Similarity=0.465 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCchHHHHHHHHhC
Q 038637 228 FSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
..+|.|.|++|+||||+|+.+..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999999999976
No 404
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=89.98 E-value=0.13 Score=51.20 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=20.1
Q ss_pred EEEEEEcCCCchHHHHHHHHhC
Q 038637 229 SVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
..|.|.|++|+||||+|+.+..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999976
No 405
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=89.98 E-value=0.15 Score=52.30 Aligned_cols=23 Identities=39% Similarity=0.443 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCchHHHHHHHHhC
Q 038637 228 FSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
-.+++|+|+.|+|||||.+.+..
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~G 54 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINF 54 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999999986
No 406
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=89.95 E-value=0.16 Score=50.04 Aligned_cols=21 Identities=29% Similarity=0.559 Sum_probs=19.8
Q ss_pred EEEEEcCCCchHHHHHHHHhC
Q 038637 230 VISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 230 vi~I~G~~GiGKTtLa~~v~~ 250 (962)
+|+|.|+.|+||||+|+.+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999876
No 407
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=89.95 E-value=1.2 Score=60.28 Aligned_cols=78 Identities=14% Similarity=0.135 Sum_probs=45.2
Q ss_pred EEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCccHHHHHHHHHhHhCCc
Q 038637 229 SVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSIANDQSNNDDDLNLLQEKLKKQLSGN 308 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~k 308 (962)
+-|.++|++|.|||++|+.+.... ..+ ..+.++.+...+...+++.+-..+.........-. .-.-.+|
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~---~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~-------~P~~~gk 1336 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNS---SLY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTL-------LPKSDIK 1336 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC---SSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEE-------EEBSSSS
T ss_pred CeEEEECCCCCCHHHHHHHHHhcC---CCC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCccc-------cCCCCCc
Confidence 467899999999999997766532 122 23456777776666665555444322110000000 0001467
Q ss_pred eEEEEEecC
Q 038637 309 KFLLVLDDV 317 (962)
Q Consensus 309 r~LlVlDdv 317 (962)
+.++++||+
T Consensus 1337 ~~VlFiDEi 1345 (2695)
T 4akg_A 1337 NLVLFCDEI 1345 (2695)
T ss_dssp CEEEEEETT
T ss_pred eEEEEeccc
Confidence 889999996
No 408
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=89.92 E-value=0.22 Score=58.14 Aligned_cols=43 Identities=26% Similarity=0.278 Sum_probs=35.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 201 AEVYGREKEEEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 201 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
..++|.+..++.+...+... ..+.|+|++|+||||||+.++..
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--------~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--------RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--------CCEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEECchhhHhhccccccCC--------CEEEEEeCCCCCHHHHHHHHhcc
Confidence 46899999888887777533 47899999999999999999873
No 409
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=89.87 E-value=0.12 Score=50.97 Aligned_cols=23 Identities=30% Similarity=0.249 Sum_probs=20.5
Q ss_pred EEEEEEcCCCchHHHHHHHHhCc
Q 038637 229 SVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
.+++|+|+.|.|||||++.++.-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999998753
No 410
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=89.80 E-value=0.41 Score=46.57 Aligned_cols=22 Identities=36% Similarity=0.575 Sum_probs=19.3
Q ss_pred EEEEEcCCCchHHHHHHHHhCc
Q 038637 230 VISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 230 vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
.|+|-|.-|+||||.++.+++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~ 23 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4778899999999999999873
No 411
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=89.76 E-value=0.19 Score=50.87 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhC
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
.-.+++|+|+.|.|||||.+.++.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G 50 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLER 50 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 347899999999999999999976
No 412
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=89.75 E-value=0.16 Score=52.21 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCchHHHHHHHHhC
Q 038637 228 FSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
-.+++|+|+.|.|||||++.+..
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~G 59 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTG 59 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhc
Confidence 36899999999999999999986
No 413
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.75 E-value=0.16 Score=51.28 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCchHHHHHHHHhC
Q 038637 228 FSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
-.+++|+|+.|.|||||.+.++.
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~G 54 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAG 54 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999986
No 414
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=89.74 E-value=0.14 Score=50.63 Aligned_cols=22 Identities=36% Similarity=0.671 Sum_probs=20.4
Q ss_pred EEEEEEcCCCchHHHHHHHHhC
Q 038637 229 SVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
.+++|+|+.|.|||||.+.++.
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~G 57 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTIST 57 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5789999999999999999986
No 415
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=89.71 E-value=0.2 Score=52.72 Aligned_cols=25 Identities=20% Similarity=0.278 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
..++|.|+|+.|+||||||..++..
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999873
No 416
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=89.67 E-value=0.17 Score=51.78 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCchHHHHHHHHhC
Q 038637 228 FSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
-.+++|+|+.|.|||||++.++.
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~G 72 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNL 72 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEEcCCCCcHHHHHHHHHc
Confidence 46899999999999999999986
No 417
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=89.66 E-value=0.17 Score=49.60 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHhCc
Q 038637 230 VISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 230 vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
+|.|.|++|+||+|.|+.+...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999863
No 418
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=89.66 E-value=0.16 Score=51.84 Aligned_cols=23 Identities=35% Similarity=0.414 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCchHHHHHHHHhC
Q 038637 228 FSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
-.+++|+|+.|.|||||.+.++.
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~G 55 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITG 55 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35899999999999999999986
No 419
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=89.55 E-value=0.19 Score=53.87 Aligned_cols=25 Identities=36% Similarity=0.332 Sum_probs=22.4
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
...+++|+|+.|+||||+++.++.-
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhh
Confidence 4689999999999999999998873
No 420
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=89.52 E-value=0.17 Score=50.65 Aligned_cols=24 Identities=25% Similarity=0.538 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCchHHHHHHHHhCc
Q 038637 228 FSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
-.+++|+|+.|.|||||.+.++.-
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999863
No 421
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=89.51 E-value=0.17 Score=51.29 Aligned_cols=22 Identities=45% Similarity=0.702 Sum_probs=20.6
Q ss_pred EEEEEEcCCCchHHHHHHHHhC
Q 038637 229 SVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
.+++|+|+.|.|||||++.++.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~G 57 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQR 57 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999986
No 422
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=89.46 E-value=0.18 Score=51.38 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=20.8
Q ss_pred EEEEEEcCCCchHHHHHHHHhC
Q 038637 229 SVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
.+++|+|+.|.|||||++.++.
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999987
No 423
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=89.46 E-value=0.17 Score=48.61 Aligned_cols=22 Identities=41% Similarity=0.478 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHhCc
Q 038637 230 VISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 230 vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
-|.|+|.+|+|||||++.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 424
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=89.43 E-value=0.18 Score=51.49 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCchHHHHHHHHhC
Q 038637 228 FSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
-.+++|+|+.|.|||||.+.++.
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~G 63 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIIST 63 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999999986
No 425
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=89.36 E-value=0.24 Score=50.78 Aligned_cols=25 Identities=28% Similarity=0.287 Sum_probs=22.0
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhC
Q 038637 226 DGFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 226 ~~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
....++.+.|.||+||||++..+..
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~ 36 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGR 36 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHH
Confidence 3568899999999999999998875
No 426
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=89.26 E-value=0.64 Score=55.24 Aligned_cols=52 Identities=25% Similarity=0.206 Sum_probs=37.0
Q ss_pred CCccccchhhHHHHHHHHhcCCC-------CCCCCcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 200 EAEVYGREKEEEEIVELLLNDGL-------RADDGFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 200 ~~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
-.++.|.++.+++|.+.+.-... .+-...+-|.++|++|.|||.+|+++++.
T Consensus 476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e 534 (806)
T 3cf2_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANE 534 (806)
T ss_dssp STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHH
Confidence 35677888888888776643211 01123455789999999999999999984
No 427
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=89.25 E-value=0.23 Score=46.73 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=20.6
Q ss_pred EEEEEEcCCCchHHHHHHHHhCc
Q 038637 229 SVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
..|+|+|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999864
No 428
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=89.23 E-value=0.19 Score=51.76 Aligned_cols=23 Identities=35% Similarity=0.388 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCchHHHHHHHHhC
Q 038637 228 FSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
-.+++|+|+.|.|||||++.++.
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 36899999999999999999987
No 429
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=89.21 E-value=0.19 Score=50.21 Aligned_cols=21 Identities=43% Similarity=0.463 Sum_probs=19.2
Q ss_pred EEEEEcCCCchHHHHHHHHhC
Q 038637 230 VISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 230 vi~I~G~~GiGKTtLa~~v~~ 250 (962)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999976
No 430
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=89.18 E-value=0.22 Score=51.77 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCchHHHHHHHHhC
Q 038637 228 FSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
.++|.|+|+.|+||||||..++.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCcCCHHHHHHHHHH
Confidence 36899999999999999999976
No 431
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=89.18 E-value=0.19 Score=51.02 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=20.6
Q ss_pred EEEEEEcCCCchHHHHHHHHhC
Q 038637 229 SVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
.+++|+|+.|.|||||.+.++.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~G 48 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAG 48 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5899999999999999999987
No 432
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=89.18 E-value=0.2 Score=50.40 Aligned_cols=25 Identities=24% Similarity=0.139 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
....|.|.|+.|+||||+|+.+...
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3457899999999999999999863
No 433
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=89.16 E-value=0.48 Score=49.56 Aligned_cols=52 Identities=19% Similarity=0.177 Sum_probs=32.6
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhcccc-eEEEEEeCCCCCHHHHHHHHHHH
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQ-FKAWACVSEDFDVFRVTKSILKS 282 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~-~~~wv~v~~~~~~~~~~~~il~~ 282 (962)
.-.++.|+|++|+|||||++.++..... .-. .++|+.... +..++...+...
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~--~~G~~v~~~~~e~--~~~~~~~r~~~~ 86 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGT--AMGKKVGLAMLEE--SVEETAEDLIGL 86 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHH--TSCCCEEEEESSS--CHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHH--HcCCeEEEEeCcC--CHHHHHHHHHHH
Confidence 3468999999999999999998864221 112 355665432 344444444443
No 434
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=89.15 E-value=0.19 Score=49.76 Aligned_cols=21 Identities=33% Similarity=0.344 Sum_probs=19.1
Q ss_pred EEEEEcCCCchHHHHHHHHhC
Q 038637 230 VISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 230 vi~I~G~~GiGKTtLa~~v~~ 250 (962)
.|.|.|++|+||||+|+.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999976
No 435
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=89.14 E-value=0.094 Score=54.75 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=18.6
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhC
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
+..+|+|.|+.|+||||+|+.+..
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999876
No 436
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=89.14 E-value=0.19 Score=48.64 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCchHHHHHHHHhCc
Q 038637 228 FSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
.-.|+|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 467899999999999999998764
No 437
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=89.11 E-value=0.2 Score=51.27 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCchHHHHHHHHhCc
Q 038637 228 FSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
-.+++|+|+.|.|||||++.+..-
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 358999999999999999999873
No 438
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.07 E-value=0.53 Score=61.28 Aligned_cols=86 Identities=24% Similarity=0.185 Sum_probs=57.5
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHhccCCCC----CCccHHHHHHHHH
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSIANDQSN----NDDDLNLLQEKLK 302 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~~~~~l~ 302 (962)
.-+++.|+|++|+||||||.+++... ...=..++|++....++... ++.++.+... ...+.+++.+.++
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~--a~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAA--QREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHH--HTTTCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH--HhcCCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 45799999999999999999988743 22223678888888776542 4555543321 2345566666666
Q ss_pred hHh-CCceEEEEEecCCC
Q 038637 303 KQL-SGNKFLLVLDDVWN 319 (962)
Q Consensus 303 ~~l-~~kr~LlVlDdv~~ 319 (962)
... +.+.-+||+|-+..
T Consensus 455 ~lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHHTCCSEEEESCGGG
T ss_pred HHHHhcCCcEEEECCHHH
Confidence 544 24456999999843
No 439
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=89.04 E-value=0.21 Score=52.49 Aligned_cols=22 Identities=32% Similarity=0.369 Sum_probs=20.5
Q ss_pred EEEEEEcCCCchHHHHHHHHhC
Q 038637 229 SVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
++|.|+|+.|+||||||+.++.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999986
No 440
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=89.03 E-value=0.2 Score=51.56 Aligned_cols=23 Identities=39% Similarity=0.512 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCchHHHHHHHHhC
Q 038637 228 FSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
-.+++|+|+.|.|||||++.++.
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~G 67 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQN 67 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhc
Confidence 46899999999999999999986
No 441
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=89.01 E-value=0.2 Score=51.08 Aligned_cols=22 Identities=32% Similarity=0.665 Sum_probs=20.6
Q ss_pred EEEEEEcCCCchHHHHHHHHhC
Q 038637 229 SVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
.+++|+|+.|.|||||.+.++.
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G 53 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLG 53 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999986
No 442
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=88.95 E-value=0.2 Score=51.51 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCchHHHHHHHHhC
Q 038637 228 FSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
-.+++|+|+.|.|||||.+.++.
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~G 55 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAG 55 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 36899999999999999999986
No 443
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=88.87 E-value=0.2 Score=51.79 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCchHHHHHHHHhC
Q 038637 228 FSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
-.+++|+|+.|.|||||.+.++.
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~G 69 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNA 69 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCcHHHHHHHHhC
Confidence 35899999999999999999986
No 444
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=88.77 E-value=1.4 Score=48.79 Aligned_cols=52 Identities=12% Similarity=0.018 Sum_probs=33.8
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHH
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKS 282 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~ 282 (962)
.-.++.|.|.+|+||||+|..++.+.-.. =..++|++... +..++...++..
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSlEm--s~~ql~~R~~~~ 247 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSLEM--GKKENIKRLIVT 247 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECSSS--CTTHHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEECCC--CHHHHHHHHHHH
Confidence 44689999999999999999888743222 12456665443 344555555443
No 445
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=88.76 E-value=0.21 Score=52.16 Aligned_cols=24 Identities=17% Similarity=0.247 Sum_probs=21.4
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhC
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
.-.+++|+|+.|.|||||++.+..
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhh
Confidence 446899999999999999999876
No 446
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=88.72 E-value=0.24 Score=52.29 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
...+|.|+|.+|+||||++..++..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999888763
No 447
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=88.71 E-value=0.25 Score=50.52 Aligned_cols=24 Identities=25% Similarity=0.409 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhC
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
.-.+++|+|+.|+|||||++.+..
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHH
Confidence 347999999999999999999876
No 448
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=88.71 E-value=0.21 Score=55.12 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=22.8
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 226 DGFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 226 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
....+|.|+|++|+||||+|+.+...
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 35689999999999999999999863
No 449
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=88.63 E-value=0.23 Score=46.16 Aligned_cols=23 Identities=26% Similarity=0.366 Sum_probs=20.3
Q ss_pred EEEEEEcCCCchHHHHHHHHhCc
Q 038637 229 SVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
+-|.|+|.+|+|||||+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999998764
No 450
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=88.56 E-value=0.21 Score=50.06 Aligned_cols=25 Identities=28% Similarity=0.194 Sum_probs=22.2
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhC
Q 038637 226 DGFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 226 ~~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
....+|+|.|+.|+||||+++.+..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~ 42 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEK 42 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHh
Confidence 3457999999999999999999876
No 451
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=88.55 E-value=0.39 Score=48.03 Aligned_cols=25 Identities=36% Similarity=0.495 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
....|.|.|+.|+||||+++.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999874
No 452
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=88.54 E-value=0.6 Score=53.76 Aligned_cols=104 Identities=14% Similarity=0.159 Sum_probs=53.8
Q ss_pred EEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHhccCCCCCCccHHHHHHHHH-hHhC-
Q 038637 229 SVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSIANDQSNNDDDLNLLQEKLK-KQLS- 306 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~~~l~-~~l~- 306 (962)
+++.|+|.+|.||||++..+....... ...+.+......-. ..+.+.++. .......+..... ....
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~---g~~Vl~~ApT~~Aa----~~L~e~~~~----~a~Tih~ll~~~~~~~~~~ 273 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESL---GLEVGLCAPTGKAA----RRLGEVTGR----TASTVHRLLGYGPQGFRHN 273 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEESSHHHH----HHHHHHHTS----CEEEHHHHTTEETTEESCS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEecCcHHHH----HHhHhhhcc----cHHHHHHHHcCCcchhhhh
Confidence 588899999999999998887632211 23344444332222 222222221 1111111110000 0000
Q ss_pred ----CceEEEEEecCCCCCccchhhccCCCCCCCCCcEEEEEec
Q 038637 307 ----GNKFLLVLDDVWNKNYNYWSILSCPFGAGAPGSKIVVTTR 346 (962)
Q Consensus 307 ----~kr~LlVlDdv~~~~~~~~~~l~~~l~~~~~gs~ilvTtR 346 (962)
.+--+||+|.+..-+...+..+...++ .+.++|+.--
T Consensus 274 ~~~~~~~dvlIIDEasml~~~~~~~Ll~~~~---~~~~lilvGD 314 (574)
T 3e1s_A 274 HLEPAPYDLLIVDEVSMMGDALMLSLLAAVP---PGARVLLVGD 314 (574)
T ss_dssp SSSCCSCSEEEECCGGGCCHHHHHHHHTTSC---TTCEEEEEEC
T ss_pred hcccccCCEEEEcCccCCCHHHHHHHHHhCc---CCCEEEEEec
Confidence 022389999997665566666666655 5667776543
No 453
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=88.54 E-value=0.38 Score=52.53 Aligned_cols=86 Identities=15% Similarity=0.229 Sum_probs=50.1
Q ss_pred EEEEEEcCCCchHHHHHHHHhCccchhcccc----eEEEEEeCCCC-CHHHHHHHHHHH--hcc-----CCCCCCccHHH
Q 038637 229 SVISINGMGGVGKTTLAQLVYNDDRVQRHFQ----FKAWACVSEDF-DVFRVTKSILKS--IAN-----DQSNNDDDLNL 296 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~----~~~wv~v~~~~-~~~~~~~~il~~--l~~-----~~~~~~~~~~~ 296 (962)
.-++|.|..|+|||+|+.++.+.... +-+ ..+++-+++.. ...++.+++.+. +.. ... +......
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~--~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~ats-d~p~~~r 228 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQATV--LDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLA-NDPAIER 228 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBC--SSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEET-TSCHHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHHh--ccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECC-CCCHHHH
Confidence 34689999999999999999885332 222 55677777654 345555555442 110 001 1111111
Q ss_pred -----HHHHHHhHh---CCceEEEEEecC
Q 038637 297 -----LQEKLKKQL---SGNKFLLVLDDV 317 (962)
Q Consensus 297 -----~~~~l~~~l---~~kr~LlVlDdv 317 (962)
..-.+.+++ +++.+|+++||+
T Consensus 229 ~~a~~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 229 IATPRMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 112234444 379999999998
No 454
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=88.48 E-value=0.25 Score=54.82 Aligned_cols=43 Identities=23% Similarity=0.226 Sum_probs=30.0
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCC
Q 038637 226 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFD 271 (962)
Q Consensus 226 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~ 271 (962)
....+++|+|..|+|||||++.+..-. . .-...+++...+.+.
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll--~-~~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQF--E-QQGKSVMLAAGDTFR 333 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHH--H-HTTCCEEEECCCTTC
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHh--h-hcCCeEEEecCcccc
Confidence 356899999999999999999988632 2 123455555444444
No 455
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=88.45 E-value=0.22 Score=48.63 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCchHHHHHHHHhCc
Q 038637 228 FSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
.-.|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999999764
No 456
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=88.45 E-value=0.23 Score=52.15 Aligned_cols=22 Identities=32% Similarity=0.376 Sum_probs=20.3
Q ss_pred EEEEEEcCCCchHHHHHHHHhC
Q 038637 229 SVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999876
No 457
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=88.38 E-value=0.5 Score=60.64 Aligned_cols=82 Identities=26% Similarity=0.245 Sum_probs=0.0
Q ss_pred EEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHhccCCCC----CCccHHHHHHHHHhH
Q 038637 229 SVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSIANDQSN----NDDDLNLLQEKLKKQ 304 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l~~~~~~----~~~~~~~~~~~l~~~ 304 (962)
+++.|.|++|+||||||.+++. .....=..++|++....++... ++.++.+... ...+.+++.+.++..
T Consensus 384 ~lilI~G~pGsGKTtLaLq~a~--~~~~~G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~i~~~~~~e~~l~~l~~l 456 (1706)
T 3cmw_A 384 RIVEIYGPESSGKTTLTLQVIA--AAQREGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICDAL 456 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH--HHHHTTCCEEEECTTSCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH--HHHHhCCCeEEEEccCchHHHH-----HHHcCCCHHHeEEcCCCCHHHHHHHHHHH
Q ss_pred h-CCceEEEEEecC
Q 038637 305 L-SGNKFLLVLDDV 317 (962)
Q Consensus 305 l-~~kr~LlVlDdv 317 (962)
. +.+.-+||+|-+
T Consensus 457 v~~~~~~lVVIDSL 470 (1706)
T 3cmw_A 457 ARSGAVDVIVVDSV 470 (1706)
T ss_dssp HHHTCCSEEEESCS
T ss_pred HHhcCCCEEEECCH
No 458
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=88.37 E-value=0.29 Score=50.72 Aligned_cols=24 Identities=29% Similarity=0.166 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhC
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
..++|.|+|+.|+||||||..++.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHH
Confidence 457899999999999999999976
No 459
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=88.35 E-value=1 Score=50.20 Aligned_cols=58 Identities=16% Similarity=0.147 Sum_probs=40.2
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCH-HHHHHH
Q 038637 212 EIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDV-FRVTKS 278 (962)
Q Consensus 212 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~-~~~~~~ 278 (962)
+.++.|..-. +-.-++|.|..|+|||+|++++.+. .+-+..+++-+++.... .+++++
T Consensus 216 rvID~l~Pig-----kGqr~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~iGER~~Ev~e~~~~ 274 (588)
T 3mfy_A 216 RVIDTFFPQA-----KGGTAAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIGCGERGNEMTDVLEE 274 (588)
T ss_dssp HHHHHHSCEE-----TTCEEEECSCCSHHHHHHHHHHHHH----SSCSEEEEEECCSSSSHHHHHHHH
T ss_pred chhhccCCcc-----cCCeEEeecCCCCCHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHH
Confidence 3566665432 3456799999999999999998763 23356788888887653 344444
No 460
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=88.13 E-value=0.32 Score=49.16 Aligned_cols=40 Identities=20% Similarity=0.241 Sum_probs=27.8
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCC
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSE 268 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~ 268 (962)
.-.++.|.|++|+||||||..++... ...=..++|++...
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~--~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNG--LKMGEPGIYVALEE 61 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHH--HHTTCCEEEEESSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH--HhcCCeEEEEEccC
Confidence 34689999999999999998776532 11223566776544
No 461
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=88.10 E-value=0.4 Score=46.29 Aligned_cols=114 Identities=18% Similarity=0.083 Sum_probs=72.7
Q ss_pred cCCCCeeEEccCCCccccccccccCcchhhhCCCCcccEEEeCCCcCccc-----ccccccCCCcCCeEeccCCCCc---
Q 038637 581 CDVEHLRTFLPVNLSDYRRNYLAWSVPHMLLNHLPRLRVFSLCGYCNIFN-----LPNEIGNLKHLRCLNLSRTRIQ--- 652 (962)
Q Consensus 581 ~~~~~Lr~L~~~~~~~~~~~~~~~~~~~~~l~~l~~Lr~L~L~~~~~~~~-----lp~~i~~L~~Lr~L~Ls~~~i~--- 652 (962)
.+-+.|+.|.+.++..+.... .......+..-..|+.|+|++| .++. +-..+..-..|++|+|++|.|.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~g--a~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKER--IRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHH--HHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred hcCCCccEEECCCCCCCCHHH--HHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 345667777765431110000 0112234566788999999999 5653 3344556678999999999988
Q ss_pred --cccccccccccCcEEeeCCCcc--cc-----ccchhcccCCCccEEecCCCC
Q 038637 653 --ILPESINSLYNLHTILLENCWE--LK-----KLCKDMGNLTKLRHLRNSDAG 697 (962)
Q Consensus 653 --~lp~~i~~L~~L~~L~L~~~~~--l~-----~lp~~i~~L~~L~~L~l~~~~ 697 (962)
.+-+.+..-..|++|+|++|.. ++ .+...+..-+.|+.|+++.+.
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 3445566667899999987632 22 234445566788999887664
No 462
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=88.08 E-value=0.64 Score=51.50 Aligned_cols=98 Identities=20% Similarity=0.306 Sum_probs=55.4
Q ss_pred HHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHH-HHHhCccch----hcccc-eEEEEEeCCCCC-HHHHHHHHHHHhcc
Q 038637 213 IVELLLNDGLRADDGFSVISINGMGGVGKTTLA-QLVYNDDRV----QRHFQ-FKAWACVSEDFD-VFRVTKSILKSIAN 285 (962)
Q Consensus 213 l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa-~~v~~~~~~----~~~F~-~~~wv~v~~~~~-~~~~~~~il~~l~~ 285 (962)
.++.|..-. +-.-++|+|.+|+|||+|| ..+.+.... ..+-+ ..+++-+++... ..++.+++...=..
T Consensus 152 aID~l~Pig-----rGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~g~m 226 (510)
T 2ck3_A 152 AVDSLVPIG-----RGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAM 226 (510)
T ss_dssp HHHHHSCCB-----TTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHTTCG
T ss_pred eeccccccc-----cCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhcCCc
Confidence 566665432 3345689999999999994 567764321 01234 467788887653 44555555442111
Q ss_pred -------CCCCCCccHH--------HHHHHHHhHhCCceEEEEEecC
Q 038637 286 -------DQSNNDDDLN--------LLQEKLKKQLSGNKFLLVLDDV 317 (962)
Q Consensus 286 -------~~~~~~~~~~--------~~~~~l~~~l~~kr~LlVlDdv 317 (962)
...+...... ...+.+++ +++.+||++||+
T Consensus 227 ~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd--~G~dVLli~Dsl 271 (510)
T 2ck3_A 227 KYTIVVSATASDAAPLQYLAPYSGCSMGEYFRD--NGKHALIIYDDL 271 (510)
T ss_dssp GGEEEEEECTTSCHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETH
T ss_pred ccceEEEECCCCCHHHHHHHHHHHHHHHHHHHH--cCCcEEEEEcCH
Confidence 0110111111 22333443 589999999998
No 463
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=88.07 E-value=0.27 Score=54.24 Aligned_cols=25 Identities=36% Similarity=0.368 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
..++|.|+|.+|+||||+|..+...
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4579999999999999999888763
No 464
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=88.03 E-value=0.26 Score=47.32 Aligned_cols=24 Identities=29% Similarity=0.250 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCchHHHHHHHHhCc
Q 038637 228 FSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
-+.|.|+|+.|+||||||.++...
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 367899999999999999998763
No 465
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=87.98 E-value=0.24 Score=51.80 Aligned_cols=24 Identities=25% Similarity=0.519 Sum_probs=21.5
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhC
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
.-.+++|+|+.|.|||||++.+..
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCchHHHHHHHHHc
Confidence 346899999999999999999976
No 466
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=87.96 E-value=0.44 Score=51.46 Aligned_cols=24 Identities=29% Similarity=0.189 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhC
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
...+++|+|++|.|||||++.+..
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 456999999999999999999986
No 467
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=87.95 E-value=0.26 Score=53.82 Aligned_cols=89 Identities=10% Similarity=0.192 Sum_probs=49.7
Q ss_pred EEEEEEcCCCchHHHHHHHHhCccchh--------cccc-eEEEEEeCCCC-CHHHHHHHHHHH--hcc-----CCCCCC
Q 038637 229 SVISINGMGGVGKTTLAQLVYNDDRVQ--------RHFQ-FKAWACVSEDF-DVFRVTKSILKS--IAN-----DQSNND 291 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~~~~~~--------~~F~-~~~wv~v~~~~-~~~~~~~~il~~--l~~-----~~~~~~ 291 (962)
.-++|.|.+|+|||+|+.++++..... ++=+ ..+++-+++.. ...++.+++.+. +.. ...+..
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p 227 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDP 227 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSC
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCC
Confidence 456899999999999999998754331 1111 45677777654 344555554332 100 001011
Q ss_pred ccHHH----HHHHHHhHh---CCceEEEEEecC
Q 038637 292 DDLNL----LQEKLKKQL---SGNKFLLVLDDV 317 (962)
Q Consensus 292 ~~~~~----~~~~l~~~l---~~kr~LlVlDdv 317 (962)
.-... ..-.+.+++ +++.+|+++||+
T Consensus 228 ~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 228 TIERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 11111 112334444 379999999998
No 468
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=87.92 E-value=0.26 Score=50.48 Aligned_cols=22 Identities=36% Similarity=0.463 Sum_probs=20.5
Q ss_pred EEEEEEcCCCchHHHHHHHHhC
Q 038637 229 SVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
.+++|+|+.|.|||||.+.++.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999986
No 469
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=87.92 E-value=0.25 Score=50.81 Aligned_cols=21 Identities=33% Similarity=0.646 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHhC
Q 038637 230 VISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 230 vi~I~G~~GiGKTtLa~~v~~ 250 (962)
.++|+|+.|+|||||.+.++.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g 24 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFK 24 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 579999999999999999986
No 470
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=87.81 E-value=1.2 Score=49.45 Aligned_cols=54 Identities=15% Similarity=0.038 Sum_probs=36.4
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCCHHHHHHHHHHHh
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFDVFRVTKSILKSI 283 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~~~~~~~~il~~l 283 (962)
.-.++.|.|.+|+||||+|..++.+.-.. .=..++|++.. -+..++...++...
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~-~g~~vl~~slE--~~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALK-EGVGVGIYSLE--MPAAQLTLRMMCSE 252 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHT-TCCCEEEEESS--SCHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCeEEEEECC--CCHHHHHHHHHHHH
Confidence 44688999999999999999887743211 11246676654 44667777666543
No 471
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=87.79 E-value=0.28 Score=49.43 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=22.0
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhC
Q 038637 226 DGFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 226 ~~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
....+|+|+|+.|+||||+++.+..
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999876
No 472
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=87.75 E-value=0.32 Score=46.74 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=21.8
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
....|+|+|.+|+|||||...+...
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467899999999999999999874
No 473
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=87.71 E-value=0.36 Score=45.74 Aligned_cols=26 Identities=31% Similarity=0.367 Sum_probs=22.2
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 226 DGFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 226 ~~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
.+...|.|+|.+|+|||||...+...
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35567899999999999999999764
No 474
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=87.57 E-value=0.27 Score=51.04 Aligned_cols=23 Identities=30% Similarity=0.312 Sum_probs=20.7
Q ss_pred cEEEEEEcCCCchHHHHHHHHhC
Q 038637 228 FSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
-.++.|+|++|+||||||..++.
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 46899999999999999998875
No 475
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=87.50 E-value=0.51 Score=52.24 Aligned_cols=84 Identities=18% Similarity=0.183 Sum_probs=49.2
Q ss_pred cEEEEEEcCCCchHHHHH-HHHhCccchhcccc-eEEEEEeCCCCC-HHHHHHHHHHHhccC-------CCCCCcc----
Q 038637 228 FSVISINGMGGVGKTTLA-QLVYNDDRVQRHFQ-FKAWACVSEDFD-VFRVTKSILKSIAND-------QSNNDDD---- 293 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa-~~v~~~~~~~~~F~-~~~wv~v~~~~~-~~~~~~~il~~l~~~-------~~~~~~~---- 293 (962)
-.-++|+|.+|+|||+|| ..+.+.. .-+ ..+++-+++... ..++.+++...=... ..+....
T Consensus 163 GQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~ 238 (507)
T 1fx0_A 163 GQRELIIGDRQTGKTAVATDTILNQQ----GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYL 238 (507)
T ss_dssp TCBCBEEESSSSSHHHHHHHHHHTCC----TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTH
T ss_pred CCEEEEecCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHH
Confidence 345689999999999995 6787743 234 346777887653 334444443321000 0101111
Q ss_pred ----HHHHHHHHHhHhCCceEEEEEecC
Q 038637 294 ----LNLLQEKLKKQLSGNKFLLVLDDV 317 (962)
Q Consensus 294 ----~~~~~~~l~~~l~~kr~LlVlDdv 317 (962)
.-...+.+++ +++.+||++||+
T Consensus 239 a~~~a~tiAEyfrd--~G~dVLli~Dsl 264 (507)
T 1fx0_A 239 APYTGAALAEYFMY--RERHTLIIYDDL 264 (507)
T ss_dssp HHHHHHHHHHHHHH--TTCEEEEEEECH
T ss_pred HHHHHHHHHHHHHH--cCCcEEEEEecH
Confidence 1223444554 589999999997
No 476
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=87.43 E-value=0.29 Score=46.22 Aligned_cols=24 Identities=38% Similarity=0.490 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCchHHHHHHHHhCc
Q 038637 228 FSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
.--|.|+|.+|+|||||.+.+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 356899999999999999999764
No 477
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=87.42 E-value=1.3 Score=49.63 Aligned_cols=50 Identities=12% Similarity=0.147 Sum_probs=36.4
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCC
Q 038637 212 EIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDF 270 (962)
Q Consensus 212 ~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~ 270 (962)
+.++.|..-. +-.-++|.|..|+|||+|+.++.+. .+-+..+++-+++..
T Consensus 221 rvID~l~Pig-----rGqr~~Ifgg~g~GKT~L~~~ia~~----~~~~v~V~~~iGER~ 270 (600)
T 3vr4_A 221 RVIDTFFPVT-----KGGAAAVPGPFGAGKTVVQHQIAKW----SDVDLVVYVGCGERG 270 (600)
T ss_dssp HHHHHHSCCB-----TTCEEEEECCTTSCHHHHHHHHHHH----SSCSEEEEEEEEECH
T ss_pred hhhhccCCcc-----CCCEEeeecCCCccHHHHHHHHHhc----cCCCEEEEEEecccH
Confidence 3667775442 3456799999999999999999873 233567788888763
No 478
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=87.30 E-value=0.55 Score=49.39 Aligned_cols=42 Identities=19% Similarity=0.159 Sum_probs=28.2
Q ss_pred CCcEEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCC
Q 038637 226 DGFSVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSED 269 (962)
Q Consensus 226 ~~~~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~ 269 (962)
...++|+|+|-||+||||+|..++... ...=..++-|+....
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~L--a~~G~~VlliD~D~~ 80 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAF--SILGKRVLQIGCDPK 80 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH--HHTTCCEEEEEESSS
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHH--HHCCCeEEEEeCCCC
Confidence 467899999999999999998776532 221124556666543
No 479
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=87.24 E-value=0.61 Score=45.92 Aligned_cols=41 Identities=15% Similarity=0.020 Sum_probs=26.2
Q ss_pred EEEEEEcCCCchHHHHHHHHhCccchhcccceEEEEEeCCCCC
Q 038637 229 SVISINGMGGVGKTTLAQLVYNDDRVQRHFQFKAWACVSEDFD 271 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~~~~~~~~F~~~~wv~v~~~~~ 271 (962)
-.|.+.|.||+||||+|-.+..... ..-+ .+..+.+..+..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~-~~G~-~V~v~d~D~q~~ 47 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQL-RQGV-RVMAGVVETHGR 47 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHH-HTTC-CEEEEECCCTTC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHH-HCCC-CEEEEEeCCCCC
Confidence 3478899999999999877776322 1122 344555555433
No 480
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=87.10 E-value=0.31 Score=50.63 Aligned_cols=24 Identities=25% Similarity=0.538 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCchHHHHHHHHhCc
Q 038637 228 FSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
-.+++|+|+.|.|||||.+.+..-
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 468999999999999999999863
No 481
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=87.06 E-value=0.41 Score=50.18 Aligned_cols=31 Identities=26% Similarity=0.381 Sum_probs=25.0
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHh
Q 038637 210 EEEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVY 249 (962)
Q Consensus 210 ~~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~ 249 (962)
+++|.+.+. -.+++++|+.|+|||||.+.+.
T Consensus 156 i~~L~~~l~---------G~i~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 156 IDELVDYLE---------GFICILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp HHHHHHHTT---------TCEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHhhcc---------CcEEEEECCCCCCHHHHHHHHH
Confidence 556666652 2588999999999999999997
No 482
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=86.99 E-value=0.31 Score=45.64 Aligned_cols=22 Identities=32% Similarity=0.449 Sum_probs=19.3
Q ss_pred EEEEEcCCCchHHHHHHHHhCc
Q 038637 230 VISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 230 vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
-|.|+|.+|+|||||.+.+...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4689999999999999998753
No 483
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=86.98 E-value=0.31 Score=46.18 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=20.4
Q ss_pred EEEEEEcCCCchHHHHHHHHhCc
Q 038637 229 SVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
..|+|+|.+|+|||||.+.+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999864
No 484
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=86.97 E-value=0.3 Score=45.47 Aligned_cols=22 Identities=32% Similarity=0.614 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHhCc
Q 038637 230 VISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 230 vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
-|.++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998754
No 485
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=86.94 E-value=0.28 Score=52.00 Aligned_cols=24 Identities=38% Similarity=0.544 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhC
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
..+++.|+|+.|.|||||.+.+..
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~ 26 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILN 26 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHH
T ss_pred cccEEEEEecCCCCHHHHHHHHHh
Confidence 578999999999999999999985
No 486
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=86.92 E-value=0.32 Score=49.13 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCchHHHHHHHHhCc
Q 038637 228 FSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
...|.|.|..|+||||+++.+...
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 368999999999999999999863
No 487
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=86.89 E-value=0.33 Score=46.52 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=19.8
Q ss_pred EEEEEEcCCCchHHHHHHHHhC
Q 038637 229 SVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
.+.+|+|+.|.|||||+.+++.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHH
Confidence 3889999999999999999865
No 488
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=86.86 E-value=0.93 Score=44.61 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCchHHHHHHHHhCc
Q 038637 228 FSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
...|.|.|+.|+||||+++.+...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999873
No 489
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=86.80 E-value=0.42 Score=45.68 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
....|.|+|.+|+|||||...+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567899999999999999999875
No 490
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=86.80 E-value=0.53 Score=47.73 Aligned_cols=37 Identities=16% Similarity=0.133 Sum_probs=27.2
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 211 EEIVELLLNDGLRADDGFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 211 ~~l~~~L~~~~~~~~~~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
.-+..||.... ++...|.++|++|.|||.+|.++++.
T Consensus 91 ~~l~~~l~~~~----~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 91 SVFLGWATKKF----GKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHHTTCS----TTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhCCC----CCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 34566664321 23467999999999999999999873
No 491
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=86.75 E-value=0.4 Score=46.36 Aligned_cols=25 Identities=28% Similarity=0.547 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
+...|.|+|.+|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567899999999999999999864
No 492
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=86.63 E-value=0.33 Score=51.92 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCchHHHHHHHHhC
Q 038637 228 FSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
-.+++|+|+.|.|||||.+.++-
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCchHHHHHHHHhc
Confidence 36899999999999999999987
No 493
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=86.57 E-value=0.23 Score=57.53 Aligned_cols=50 Identities=24% Similarity=0.296 Sum_probs=31.1
Q ss_pred ccccchhhHHHHHHHHhcCCCC--CC---CCcEEEEEEcCCCchHHHHHHHHhCc
Q 038637 202 EVYGREKEEEEIVELLLNDGLR--AD---DGFSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 202 ~~vGr~~~~~~l~~~L~~~~~~--~~---~~~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
.++|.+..+..+.-.|...... .+ ..-.-|.++|++|+|||+||+.+++.
T Consensus 296 ~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~ 350 (595)
T 3f9v_A 296 SIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRV 350 (595)
T ss_dssp TTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTT
T ss_pred hhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHh
Confidence 4677776665554444322100 00 00115789999999999999999874
No 494
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=86.57 E-value=0.35 Score=45.43 Aligned_cols=22 Identities=36% Similarity=0.413 Sum_probs=19.3
Q ss_pred EEEEEEcCCCchHHHHHHHHhC
Q 038637 229 SVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
--|.|+|.+|+|||||+..+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3578999999999999999864
No 495
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=86.47 E-value=0.34 Score=51.83 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCchHHHHHHHHhC
Q 038637 228 FSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
-.+++|+|+.|.|||||.+.+..
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~G 76 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNL 76 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEEcCCCchHHHHHHHHhc
Confidence 46899999999999999999976
No 496
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=86.46 E-value=0.35 Score=45.46 Aligned_cols=23 Identities=30% Similarity=0.520 Sum_probs=20.0
Q ss_pred EEEEEEcCCCchHHHHHHHHhCc
Q 038637 229 SVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
--|.|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999999864
No 497
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=86.36 E-value=0.36 Score=52.75 Aligned_cols=24 Identities=17% Similarity=0.375 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhC
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
...+++|+|+.|+|||||.+.+..
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHhC
Confidence 457999999999999999999987
No 498
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=86.32 E-value=0.26 Score=50.62 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=21.6
Q ss_pred CcEEEEEEcCCCchHHHHHHHHhC
Q 038637 227 GFSVISINGMGGVGKTTLAQLVYN 250 (962)
Q Consensus 227 ~~~vi~I~G~~GiGKTtLa~~v~~ 250 (962)
+...|.|.|..|+||||+|+.+..
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~ 46 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQ 46 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 557999999999999999988876
No 499
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=86.26 E-value=0.35 Score=46.58 Aligned_cols=23 Identities=30% Similarity=0.560 Sum_probs=20.1
Q ss_pred EEEEEEcCCCchHHHHHHHHhCc
Q 038637 229 SVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 229 ~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
--|.|+|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46789999999999999999764
No 500
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=86.14 E-value=0.44 Score=44.58 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=20.5
Q ss_pred cEEEEEEcCCCchHHHHHHHHhCc
Q 038637 228 FSVISINGMGGVGKTTLAQLVYND 251 (962)
Q Consensus 228 ~~vi~I~G~~GiGKTtLa~~v~~~ 251 (962)
.--|.|+|.+|+|||||+..+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 345789999999999999998764
Done!