BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038639
(229 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|356547359|ref|XP_003542081.1| PREDICTED: uncharacterized RNA methyltransferase CT0009-like
[Glycine max]
Length = 533
Score = 157 bits (397), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 73/94 (77%), Positives = 79/94 (84%), Gaps = 3/94 (3%)
Query: 130 EMEFSFGPKRWFPKESLPKR---GDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVL 186
+MEFSFGP+RW PKESL R D ENYALGLHAPGFFDK+LN+D CLLQS PAN VL
Sbjct: 178 KMEFSFGPQRWLPKESLQDRIVDDDTNENYALGLHAPGFFDKILNVDNCLLQSHPANKVL 237
Query: 187 AAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
AAVQ+ WRDPQLG SPY+VHSH GFLKHLMLRTG
Sbjct: 238 AAVQECWRDPQLGFSPYNVHSHKGFLKHLMLRTG 271
Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 50/65 (76%), Positives = 54/65 (83%), Gaps = 1/65 (1%)
Query: 67 DSNNNDYFKPIRGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKG 126
D N YF P RGQ LELVCESLA+KGKG+CKV TGFVVLCDR LPGE FIGRVTRKKG
Sbjct: 35 DPTPNSYF-PKRGQTLELVCESLAFKGKGLCKVTQTGFVVLCDRALPGEHFIGRVTRKKG 93
Query: 127 SYAEM 131
+YAE+
Sbjct: 94 NYAEV 98
>gi|19310570|gb|AAL85018.1| unknown protein [Arabidopsis thaliana]
Length = 564
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 71/91 (78%), Positives = 78/91 (85%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSFGP+RW P E L +R D +N+ALGLHAPGFFDKVLN+DKCLLQSEP NLVLAAV
Sbjct: 212 KMEFSFGPQRWLPIEMLNERQDGPKNFALGLHAPGFFDKVLNVDKCLLQSEPGNLVLAAV 271
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
QD WRDP+L LSPYD SH GFLKHLMLRTG
Sbjct: 272 QDCWRDPELSLSPYDCRSHVGFLKHLMLRTG 302
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 45/79 (56%), Positives = 58/79 (73%), Gaps = 7/79 (8%)
Query: 60 KPQFETFDSNNNDY-------FKPIRGQELELVCESLAYKGKGVCKVADTGFVVLCDRVL 112
K Q + D NN + + P RG+ +ELVCESL +KGKG+CKV TG+VV+CDR L
Sbjct: 54 KAQKKLNDENNTNVSNEKTAPYYPKRGETVELVCESLGFKGKGICKVDGTGYVVMCDRAL 113
Query: 113 PGEKFIGRVTRKKGSYAEM 131
PGE+F+GRVTR+KGSYAE+
Sbjct: 114 PGERFLGRVTRRKGSYAEV 132
>gi|42565079|ref|NP_188767.2| RNA methyltransferase family protein [Arabidopsis thaliana]
gi|9280234|dbj|BAB01724.1| RNA methyltransferase-like protein [Arabidopsis thaliana]
gi|332642969|gb|AEE76490.1| RNA methyltransferase family protein [Arabidopsis thaliana]
Length = 554
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 71/91 (78%), Positives = 78/91 (85%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSFGP+RW P E L +R D +N+ALGLHAPGFFDKVLN+DKCLLQSEP NLVLAAV
Sbjct: 202 KMEFSFGPQRWLPIEMLNERQDGPKNFALGLHAPGFFDKVLNVDKCLLQSEPGNLVLAAV 261
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
QD WRDP+L LSPYD SH GFLKHLMLRTG
Sbjct: 262 QDCWRDPELSLSPYDCRSHVGFLKHLMLRTG 292
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 45/79 (56%), Positives = 58/79 (73%), Gaps = 7/79 (8%)
Query: 60 KPQFETFDSNNNDY-------FKPIRGQELELVCESLAYKGKGVCKVADTGFVVLCDRVL 112
K Q + D NN + + P RG+ +ELVCESL +KGKG+CKV TG+VV+CDR L
Sbjct: 44 KAQKKLNDENNTNVSNEKTAPYYPKRGETVELVCESLGFKGKGICKVDGTGYVVMCDRAL 103
Query: 113 PGEKFIGRVTRKKGSYAEM 131
PGE+F+GRVTR+KGSYAE+
Sbjct: 104 PGERFLGRVTRRKGSYAEV 122
>gi|356557321|ref|XP_003546965.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized RNA
methyltransferase CT0009-like [Glycine max]
Length = 535
Score = 153 bits (386), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 73/96 (76%), Positives = 78/96 (81%), Gaps = 5/96 (5%)
Query: 130 EMEFSFGPKRWFPKESLPKR--GDHI---ENYALGLHAPGFFDKVLNIDKCLLQSEPANL 184
EMEFSFGP+RW PKE L R D + ENYALGLHAPGFFDK+LN+D CLLQS PAN
Sbjct: 183 EMEFSFGPRRWLPKELLQDRRADDDVGNNENYALGLHAPGFFDKILNVDNCLLQSHPANK 242
Query: 185 VLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
VLAAVQ+ WRDPQLG SPY VHSH GFLKHLMLRTG
Sbjct: 243 VLAAVQECWRDPQLGFSPYSVHSHKGFLKHLMLRTG 278
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/74 (59%), Positives = 48/74 (64%), Gaps = 10/74 (13%)
Query: 64 ETFDSNNNDYFKPIRGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTR 123
E D N YF P RG LELVCESLA+KGKG+C V TGFVVLCDR RVTR
Sbjct: 39 EDVDPTPNSYF-PKRGLTLELVCESLAFKGKGLCXVTQTGFVVLCDR---------RVTR 88
Query: 124 KKGSYAEMEFSFGP 137
KKG+YAE+ F P
Sbjct: 89 KKGNYAELTHLFSP 102
>gi|255549690|ref|XP_002515896.1| RNA m5u methyltransferase, putative [Ricinus communis]
gi|223544801|gb|EEF46316.1| RNA m5u methyltransferase, putative [Ricinus communis]
Length = 577
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 69/91 (75%), Positives = 76/91 (83%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSFG K+W P+E L ++ D NYALGLHAPG FDKVLN+DKCLLQSEPAN VLA V
Sbjct: 225 KMEFSFGSKKWLPRELLGEKQDGSVNYALGLHAPGCFDKVLNVDKCLLQSEPANTVLATV 284
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
QD WRD Q GL+PYDVHSH GFLKHLMLRTG
Sbjct: 285 QDCWRDSQFGLTPYDVHSHDGFLKHLMLRTG 315
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 50/65 (76%), Positives = 57/65 (87%)
Query: 67 DSNNNDYFKPIRGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKG 126
DS+ + P RGQ LELVCESLA+KGKGVCKVADTGFVV+CDR LPGE+FIGRVTR+KG
Sbjct: 81 DSSKSGALFPKRGQSLELVCESLAFKGKGVCKVADTGFVVMCDRALPGERFIGRVTRRKG 140
Query: 127 SYAEM 131
SYAE+
Sbjct: 141 SYAEV 145
>gi|297835104|ref|XP_002885434.1| RNA methyltransferase family protein [Arabidopsis lyrata subsp.
lyrata]
gi|297331274|gb|EFH61693.1| RNA methyltransferase family protein [Arabidopsis lyrata subsp.
lyrata]
Length = 559
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 69/91 (75%), Positives = 77/91 (84%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSFGP+RW P E L ++ D +N+ALGLHAPGFFDKVLN+DKCLLQSEP NLVLAAV
Sbjct: 200 KMEFSFGPQRWLPIEMLHEKEDGPKNFALGLHAPGFFDKVLNVDKCLLQSEPGNLVLAAV 259
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
QD WRDP L LSPY+ SH GFLKHLMLRTG
Sbjct: 260 QDCWRDPALSLSPYNCRSHVGFLKHLMLRTG 290
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 41/58 (70%), Positives = 51/58 (87%)
Query: 74 FKPIRGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAEM 131
+ P RGQ +ELVCESL +KGKG+CKV TGFVV+CDR LPGE+F+GR+TR+KGSYAE+
Sbjct: 63 YYPKRGQTVELVCESLGFKGKGICKVDGTGFVVMCDRALPGERFLGRITRRKGSYAEV 120
>gi|147797617|emb|CAN65004.1| hypothetical protein VITISV_023490 [Vitis vinifera]
Length = 1255
Score = 149 bits (377), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 65/91 (71%), Positives = 78/91 (85%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSF ++W P+E L ++ D YALGLHAPGFFDKVLN++KCLLQSEPAN+VLAA+
Sbjct: 190 KMEFSFATQKWLPRELLHEKEDGASGYALGLHAPGFFDKVLNVNKCLLQSEPANMVLAAI 249
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
Q+ WRDPQ GLSPY+VHSH GFLKHL+LRTG
Sbjct: 250 QECWRDPQFGLSPYNVHSHDGFLKHLVLRTG 280
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/100 (58%), Positives = 69/100 (69%), Gaps = 2/100 (2%)
Query: 32 NSNRLWPFLFVSSPTITKTQTRTRTHDAKPQFETFDSNNNDYFKPIRGQELELVCESLAY 91
NS R W F S +I + + QF++ YF P RGQ LELVCESLA+
Sbjct: 13 NSGRPWMQNFRRS-SILSSAIPAIQDSEESQFDSPKPKTQSYF-PKRGQTLELVCESLAF 70
Query: 92 KGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAEM 131
KGKG+CKVADTGFVVLCDR LPGE+F+GRVTRKKG+YAE+
Sbjct: 71 KGKGLCKVADTGFVVLCDRALPGERFVGRVTRKKGNYAEV 110
>gi|449447830|ref|XP_004141670.1| PREDICTED: uncharacterized RNA methyltransferase BT_0643-like
[Cucumis sativus]
gi|449480609|ref|XP_004155944.1| PREDICTED: uncharacterized RNA methyltransferase BT_0643-like
[Cucumis sativus]
Length = 562
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/91 (75%), Positives = 78/91 (85%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSFG KRW PK++L ++ + E ALGLHAPGFFDKVLN+DKCLLQS PAN VLA+V
Sbjct: 203 KMEFSFGSKRWVPKDALKEKQEGDEINALGLHAPGFFDKVLNVDKCLLQSGPANQVLASV 262
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
Q+ WRDP LGLSPYDVHSH GFLKHLMLRTG
Sbjct: 263 QECWRDPLLGLSPYDVHSHKGFLKHLMLRTG 293
Score = 113 bits (282), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 56/99 (56%), Positives = 71/99 (71%), Gaps = 9/99 (9%)
Query: 41 FVSSPTITKTQTRTRTHDAK--------PQFETFDSNNNDYFKPIRGQELELVCESLAYK 92
F SS ++ + + T +HD P F S + YF P RGQ LELVCESLA+K
Sbjct: 26 FRSSTSLAASPSSTTSHDDSQRAEQHDPPSSNGFSSKSQSYF-PKRGQTLELVCESLAFK 84
Query: 93 GKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAEM 131
GKG+CKV+DTGFVV+CDRVLPGE+F+GRVTR+KG+YAE+
Sbjct: 85 GKGLCKVSDTGFVVMCDRVLPGERFVGRVTRRKGNYAEV 123
>gi|225442369|ref|XP_002276511.1| PREDICTED: uncharacterized RNA methyltransferase CT0009 [Vitis
vinifera]
gi|297743126|emb|CBI35993.3| unnamed protein product [Vitis vinifera]
Length = 570
Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 65/91 (71%), Positives = 77/91 (84%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSF ++W P+E L ++ D YALGLHAPGFFDKVLN++KCLLQSEPAN VLAA+
Sbjct: 218 KMEFSFATQKWLPRELLHEKEDGASGYALGLHAPGFFDKVLNVNKCLLQSEPANTVLAAI 277
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
Q+ WRDPQ GLSPY+VHSH GFLKHL+LRTG
Sbjct: 278 QECWRDPQFGLSPYNVHSHDGFLKHLVLRTG 308
Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 58/100 (58%), Positives = 69/100 (69%), Gaps = 2/100 (2%)
Query: 32 NSNRLWPFLFVSSPTITKTQTRTRTHDAKPQFETFDSNNNDYFKPIRGQELELVCESLAY 91
NS R W F S +I + + QF++ YF P RGQ LELVCESLA+
Sbjct: 41 NSGRPWMQNFRRS-SILSSAIPAIQDSEESQFDSPKPKTQSYF-PKRGQTLELVCESLAF 98
Query: 92 KGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAEM 131
KGKG+CKVADTGFVVLCDR LPGE+F+GRVTRKKG+YAE+
Sbjct: 99 KGKGLCKVADTGFVVLCDRALPGERFVGRVTRKKGNYAEV 138
>gi|357454725|ref|XP_003597643.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Medicago truncatula]
gi|355486691|gb|AES67894.1| 23S rRNA (uracil-5-)-methyltransferase rumA [Medicago truncatula]
Length = 560
Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 65/93 (69%), Positives = 79/93 (84%), Gaps = 2/93 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHI--ENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLA 187
+MEFSFGP +W PKESL +R ENY+LGLH PGFFDK++N++KCLLQ++PAN VLA
Sbjct: 206 KMEFSFGPYKWLPKESLHERNVDAGSENYSLGLHVPGFFDKIINVEKCLLQTDPANKVLA 265
Query: 188 AVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
A+Q+ WRDPQLG SPY+VHSH GFLKHLMLR+G
Sbjct: 266 AIQECWRDPQLGFSPYNVHSHKGFLKHLMLRSG 298
Score = 102 bits (255), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 46/67 (68%), Positives = 57/67 (85%)
Query: 64 ETFDSNNNDYFKPIRGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTR 123
+T + N + + P RGQ LEL+CESLA+KGKG+CKV DTGFVV+CDR LPGE+FIGR+TR
Sbjct: 59 KTPNPNTSTSYFPKRGQTLELLCESLAFKGKGLCKVTDTGFVVMCDRALPGERFIGRITR 118
Query: 124 KKGSYAE 130
KKG+YAE
Sbjct: 119 KKGNYAE 125
>gi|194707300|gb|ACF87734.1| unknown [Zea mays]
Length = 360
Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 63/99 (63%), Positives = 73/99 (73%), Gaps = 10/99 (10%)
Query: 131 MEFSFGPKRWFPKESLPKRGDHIE---------NYALGLHAPGFFDKVLNIDKCLLQSEP 181
MEFSFG KRW KE L +G+ +E YALGLHAPGFFDKVL++ KC LQSEP
Sbjct: 1 MEFSFGTKRWVQKE-LKDKGEEVEVKQETNETDGYALGLHAPGFFDKVLHVQKCFLQSEP 59
Query: 182 ANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
A+ VLA VQ+ W DP +GL+PYDVH H GFLKHLM+RTG
Sbjct: 60 ADKVLAVVQETWMDPAIGLTPYDVHKHVGFLKHLMIRTG 98
>gi|226494722|ref|NP_001143116.1| uncharacterized protein LOC100275594 [Zea mays]
gi|224031061|gb|ACN34606.1| unknown [Zea mays]
gi|414875873|tpg|DAA53004.1| TPA: hypothetical protein ZEAMMB73_967976 [Zea mays]
gi|414875874|tpg|DAA53005.1| TPA: hypothetical protein ZEAMMB73_967976 [Zea mays]
Length = 558
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/100 (63%), Positives = 74/100 (74%), Gaps = 10/100 (10%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIE---------NYALGLHAPGFFDKVLNIDKCLLQSE 180
+MEFSFG KRW KE L +G+ +E YALGLHAPGFFDKVL++ KC LQSE
Sbjct: 198 KMEFSFGTKRWVQKE-LKDKGEEVEVKQETNETDGYALGLHAPGFFDKVLHVQKCFLQSE 256
Query: 181 PANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
PA+ VLA VQ+ W DP +GL+PYDVH H GFLKHLM+RTG
Sbjct: 257 PADKVLAVVQETWMDPAIGLTPYDVHKHVGFLKHLMIRTG 296
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/59 (61%), Positives = 47/59 (79%), Gaps = 2/59 (3%)
Query: 73 YFKPIRGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTR-KKGSYAE 130
YF P RG+ +EL CE+LA+KGKGVCKVA + FV+LCD LPGE+ I RV R ++G++AE
Sbjct: 57 YF-PKRGETVELTCEALAFKGKGVCKVAGSTFVLLCDGALPGERLIARVRRLRRGAFAE 114
>gi|195614602|gb|ACG29131.1| hypothetical protein [Zea mays]
Length = 558
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/100 (63%), Positives = 74/100 (74%), Gaps = 10/100 (10%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIE---------NYALGLHAPGFFDKVLNIDKCLLQSE 180
+MEFSFG KRW KE L +G+ +E YALGLHAPGFFDKVL++ KC LQSE
Sbjct: 198 KMEFSFGTKRWVQKE-LKDKGEEVEVKQETNETDGYALGLHAPGFFDKVLHVQKCFLQSE 256
Query: 181 PANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
PA+ VLA VQ+ W DP +GL+PYDVH H GFLKHLM+RTG
Sbjct: 257 PADKVLAVVQETWMDPAIGLTPYDVHKHVGFLKHLMIRTG 296
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/59 (61%), Positives = 47/59 (79%), Gaps = 2/59 (3%)
Query: 73 YFKPIRGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTR-KKGSYAE 130
YF P RG+ +EL CE+LA+KGKGVCKVA + FV+LCD LPGE+ I RV R ++G++AE
Sbjct: 57 YF-PKRGETVELTCEALAFKGKGVCKVAGSTFVLLCDGALPGERLIARVRRLRRGAFAE 114
>gi|115435048|ref|NP_001042282.1| Os01g0193600 [Oryza sativa Japonica Group]
gi|9988445|dbj|BAB12711.1| putative RNA methyltransferase [Oryza sativa Japonica Group]
gi|10934074|dbj|BAB16852.1| putative RNA methyltransferase [Oryza sativa Japonica Group]
gi|113531813|dbj|BAF04196.1| Os01g0193600 [Oryza sativa Japonica Group]
gi|215697095|dbj|BAG91089.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 557
Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 61/99 (61%), Positives = 75/99 (75%), Gaps = 8/99 (8%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHI--------ENYALGLHAPGFFDKVLNIDKCLLQSEP 181
+MEFSFG KRW +E ++ D + + Y+LGLHAPGFFDKVL+++KCLLQSEP
Sbjct: 197 KMEFSFGTKRWMQREWKEEKDDEVVKEEKVEGDGYSLGLHAPGFFDKVLHVEKCLLQSEP 256
Query: 182 ANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
A+ VLA VQ+ W DP LGL+PYDVH H GFLKHLM+RTG
Sbjct: 257 ADKVLAIVQETWLDPALGLTPYDVHKHVGFLKHLMIRTG 295
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 44/59 (74%), Gaps = 2/59 (3%)
Query: 73 YFKPIRGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTR-KKGSYAE 130
YF P R + LEL CE LA+KGKGVC+V + FV+LCD LPGE+ + RV R ++G++AE
Sbjct: 56 YF-PKRNEVLELTCEGLAFKGKGVCRVDGSTFVLLCDGALPGERLLARVRRIRRGAFAE 113
>gi|222617909|gb|EEE54041.1| hypothetical protein OsJ_00721 [Oryza sativa Japonica Group]
Length = 558
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/99 (61%), Positives = 75/99 (75%), Gaps = 8/99 (8%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHI--------ENYALGLHAPGFFDKVLNIDKCLLQSEP 181
+MEFSFG KRW +E ++ D + + Y+LGLHAPGFFDKVL+++KCLLQSEP
Sbjct: 198 KMEFSFGTKRWMQREWKEEKDDEVVKEEKVEGDGYSLGLHAPGFFDKVLHVEKCLLQSEP 257
Query: 182 ANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
A+ VLA VQ+ W DP LGL+PYDVH H GFLKHLM+RTG
Sbjct: 258 ADKVLAIVQETWLDPALGLTPYDVHKHVGFLKHLMIRTG 296
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 36/49 (73%), Gaps = 1/49 (2%)
Query: 73 YFKPIRGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRV 121
YF P R + LEL CE LA+KGKGVC+V + FV+LCD LPGE+ + RV
Sbjct: 56 YF-PKRNEVLELTCEGLAFKGKGVCRVDGSTFVLLCDGALPGERLLARV 103
>gi|242051741|ref|XP_002455016.1| hypothetical protein SORBIDRAFT_03g003010 [Sorghum bicolor]
gi|241926991|gb|EES00136.1| hypothetical protein SORBIDRAFT_03g003010 [Sorghum bicolor]
Length = 558
Score = 129 bits (325), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 60/99 (60%), Positives = 72/99 (72%), Gaps = 8/99 (8%)
Query: 130 EMEFSFGPKRWFPKE--------SLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEP 181
+MEFSFG KRW KE + + + + YALGLHAPGFFDKVL++ KC LQSEP
Sbjct: 198 KMEFSFGTKRWVQKELKGKDEEVGVKQETNETDGYALGLHAPGFFDKVLHVQKCFLQSEP 257
Query: 182 ANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
A+ VLA VQ+ W DP +GL+PYDVH H GFLKHLM+RTG
Sbjct: 258 ADKVLAVVQETWMDPAVGLTPYDVHKHVGFLKHLMIRTG 296
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/59 (59%), Positives = 48/59 (81%), Gaps = 2/59 (3%)
Query: 73 YFKPIRGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTR-KKGSYAE 130
YF P RG+ +EL CE+LA+KGKGVCKVA + FV+LCD LPGE+ + RV+R ++G++AE
Sbjct: 57 YF-PKRGETVELTCEALAFKGKGVCKVAGSTFVLLCDGALPGERLVARVSRLRRGAFAE 114
>gi|218187673|gb|EEC70100.1| hypothetical protein OsI_00745 [Oryza sativa Indica Group]
Length = 624
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 62/102 (60%), Positives = 72/102 (70%), Gaps = 14/102 (13%)
Query: 130 EMEFSFGPKRWFPKE-----------SLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQ 178
+MEFSFG KRW +E GD Y+LGLHAPGFFDKVL+++KCLLQ
Sbjct: 264 KMEFSFGTKRWMQREWKEEKDVEVVKEEKVEGD---GYSLGLHAPGFFDKVLHVEKCLLQ 320
Query: 179 SEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
SEPA+ VLA VQ+ W DP LGL+PYDVH H GFLKHLM+RTG
Sbjct: 321 SEPADKVLAIVQETWLDPALGLTPYDVHKHVGFLKHLMIRTG 362
>gi|357127569|ref|XP_003565452.1| PREDICTED: uncharacterized RNA methyltransferase CT0009-like
[Brachypodium distachyon]
Length = 581
Score = 122 bits (307), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 58/97 (59%), Positives = 71/97 (73%), Gaps = 6/97 (6%)
Query: 130 EMEFSFGPKRWFPKE------SLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPAN 183
+MEFSFG KRW +E + + Y+LGLHAPGFFDKVL+++ CLLQSEPA+
Sbjct: 223 KMEFSFGTKRWMKREWKEDEEVAKGEEEEADGYSLGLHAPGFFDKVLHVETCLLQSEPAD 282
Query: 184 LVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
VLA VQ+ W DP LGL+PYDV+ H GFLKHLM+RTG
Sbjct: 283 KVLAVVQESWTDPALGLTPYDVYKHVGFLKHLMIRTG 319
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 73 YFKPIRGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGE 115
YF P + + LEL CE +A+KGKGVCKV + FV+LCD LPGE
Sbjct: 82 YF-PKKNEILELTCEGIAFKGKGVCKVEGSTFVLLCDGALPGE 123
>gi|294461082|gb|ADE76108.1| unknown [Picea sitchensis]
Length = 575
Score = 104 bits (259), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 52/92 (56%), Positives = 61/92 (66%), Gaps = 1/92 (1%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIEN-YALGLHAPGFFDKVLNIDKCLLQSEPANLVLAA 188
+MEFSFG K W P + + N ALGLH PG FDK+L I+ CLLQ + AN VLA
Sbjct: 222 KMEFSFGTKSWRPGDVVQGHDSLYANKSALGLHVPGCFDKILPINNCLLQHKIANQVLAI 281
Query: 189 VQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
VQD W+ P +S YDVH+HSGFLKHL LR G
Sbjct: 282 VQDCWQHPASNVSAYDVHTHSGFLKHLTLRAG 313
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/60 (66%), Positives = 53/60 (88%), Gaps = 1/60 (1%)
Query: 74 FKPIRGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTR-KKGSYAEME 132
F P + Q +ELVCESLAYKGKG+CK+A++GFVV+CDR LPGE+F+GR+TR KKG +AE++
Sbjct: 84 FYPRKNQVVELVCESLAYKGKGICKIAESGFVVMCDRALPGERFLGRITRMKKGRFAEVK 143
>gi|302771483|ref|XP_002969160.1| hypothetical protein SELMODRAFT_170457 [Selaginella moellendorffii]
gi|300163665|gb|EFJ30276.1| hypothetical protein SELMODRAFT_170457 [Selaginella moellendorffii]
Length = 536
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/57 (73%), Positives = 51/57 (89%)
Query: 74 FKPIRGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAE 130
F P RGQELELVCESLA+KG+GVCKV +TG+VV+CDR LPGE+ I R+T++KGSYAE
Sbjct: 43 FFPKRGQELELVCESLAFKGQGVCKVLETGYVVMCDRALPGERLIARITKRKGSYAE 99
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/93 (48%), Positives = 59/93 (63%), Gaps = 3/93 (3%)
Query: 130 EMEFSFGPKRWFPKESLPKRG--DHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLA 187
+MEFSFG RW P K D E++ALGLH PG +DK+L+I +CLLQ + AN +L
Sbjct: 181 KMEFSFG-TRWLPPNEFVKNQSPDIKEDFALGLHVPGSYDKILDIRECLLQHDVANQILL 239
Query: 188 AVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
V + + LS YD +HSGFL+HL LR+G
Sbjct: 240 DVHTFCETHRNDLSAYDTKTHSGFLRHLTLRSG 272
>gi|302784258|ref|XP_002973901.1| hypothetical protein SELMODRAFT_100133 [Selaginella moellendorffii]
gi|300158233|gb|EFJ24856.1| hypothetical protein SELMODRAFT_100133 [Selaginella moellendorffii]
Length = 536
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/57 (73%), Positives = 51/57 (89%)
Query: 74 FKPIRGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAE 130
F P RGQELELVCESLA+KG+GVCKV +TG+VV+CDR LPGE+ I R+T++KGSYAE
Sbjct: 43 FFPKRGQELELVCESLAFKGQGVCKVLETGYVVMCDRALPGERLIARITKRKGSYAE 99
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/93 (48%), Positives = 59/93 (63%), Gaps = 3/93 (3%)
Query: 130 EMEFSFGPKRWFPKESLPKRG--DHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLA 187
+MEFSFG RW P K D E++ALGLH PG +DK+L+I +CLLQ + AN +L
Sbjct: 181 KMEFSFG-TRWLPPNEFVKNQSPDIKEDFALGLHVPGSYDKILDIRECLLQHDVANQILL 239
Query: 188 AVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
V + + LS YD +HSGFL+HL LR+G
Sbjct: 240 DVHTFCETHRNDLSAYDTKTHSGFLRHLTLRSG 272
>gi|373456688|ref|ZP_09548455.1| RNA methyltransferase, TrmA family [Caldithrix abyssi DSM 13497]
gi|371718352|gb|EHO40123.1| RNA methyltransferase, TrmA family [Caldithrix abyssi DSM 13497]
Length = 467
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/94 (47%), Positives = 62/94 (65%), Gaps = 5/94 (5%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHI-ENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAA 188
+MEFSF +RW E L + HI + +ALGLH PG FDK+L+I+ CLLQSE AN +L
Sbjct: 135 KMEFSFSDRRWLLPEELNQ--AHISKEFALGLHVPGTFDKILHIETCLLQSETANQILNF 192
Query: 189 VQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGSF 222
+ DY R + L PY + SH G+L+ L++R +F
Sbjct: 193 ISDYAR--KNNLQPYGIRSHQGYLRFLVIRESAF 224
Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 78 RGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAE 130
+G E EL E LA+ G+GV ++ + +V+ R LPG+ R+ ++K +AE
Sbjct: 10 KGNEYELKIERLAFGGQGVARIDN--YVIFVKRALPGDHVKARIVKRKKDFAE 60
>gi|168028766|ref|XP_001766898.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681877|gb|EDQ68300.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 492
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/99 (47%), Positives = 62/99 (62%), Gaps = 9/99 (9%)
Query: 130 EMEFSFGPKRWFPK--------ESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEP 181
+MEFS+G K+W K E + + G +E +ALGLHAPG FDK++ I CLLQ +
Sbjct: 130 KMEFSYGTKKWKSKGLFVSPKLEDVNESGPKLE-FALGLHAPGRFDKIMPIHNCLLQHDV 188
Query: 182 ANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
+N VL VQD+ L PYDV +H GFLKHL +R+G
Sbjct: 189 SNQVLKLVQDHGERHLEELPPYDVRTHEGFLKHLTIRSG 227
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/47 (65%), Positives = 38/47 (80%)
Query: 84 LVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAE 130
+VCESLAYKG G+CKV DTGFVV C+R LPGE+ I R+ +KK +AE
Sbjct: 1 MVCESLAYKGLGLCKVVDTGFVVFCERALPGERLIARILKKKKGFAE 47
>gi|189501475|ref|YP_001957192.1| TrmA family RNA methyltransferase [Candidatus Amoebophilus
asiaticus 5a2]
gi|189496916|gb|ACE05463.1| RNA methyltransferase, TrmA family [Candidatus Amoebophilus
asiaticus 5a2]
Length = 468
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 60/92 (65%), Gaps = 3/92 (3%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++E++F KRW ++ + + ++ YALG H PG+FDKV++I C LQ+EP+N + AV
Sbjct: 132 KLEYTFSNKRWLTQQEI-QSDQPLDRYALGFHKPGYFDKVVDIQHCYLQAEPSNAIRLAV 190
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+ R+ G S YD SH G L++L++RT S
Sbjct: 191 GQFAREH--GYSFYDFRSHQGLLRNLIVRTTS 220
>gi|385811543|ref|YP_005847939.1| SAM-dependent methyltransferase [Ignavibacterium album JCM 16511]
gi|383803591|gb|AFH50671.1| SAM-dependent methyltransferase [Ignavibacterium album JCM 16511]
Length = 483
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 59/93 (63%), Gaps = 2/93 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSF KRW K+ + +++ALGLH P FDKVL++D+C LQSE +N +L
Sbjct: 145 KMEFSFSDKRWLTKQEISSATKFQKDFALGLHIPKIFDKVLDVDECFLQSELSNSILNFT 204
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGSF 222
+ ++ + +S Y +H+GFL++L++R +
Sbjct: 205 RKFF--IKKNVSVYSTKTHTGFLRNLVIRQSYY 235
>gi|225011827|ref|ZP_03702265.1| RNA methyltransferase, TrmA family [Flavobacteria bacterium
MS024-2A]
gi|225004330|gb|EEG42302.1| RNA methyltransferase, TrmA family [Flavobacteria bacterium
MS024-2A]
Length = 471
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 69/140 (49%), Gaps = 10/140 (7%)
Query: 88 SLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAEMEFSFGPKRWFPKESLP 147
L +K KGV + + VLP I RV +MEFSF KRW E +
Sbjct: 95 QLEFKEKGVLHNLNHIGKIDIKEVLP----IARVENPYYYRNKMEFSFSNKRWLTSEEIS 150
Query: 148 KRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHS 207
G IE LG H PG +DKV++ID C LQ+EP+N + A++ + QL +D
Sbjct: 151 G-GAEIERNGLGFHKPGMWDKVVDIDHCHLQAEPSNAIRNAIRSFAIQEQLEF--FDTRE 207
Query: 208 HSGFLKHLMLRT---GSFMI 224
GFL+ LM+R G M+
Sbjct: 208 QQGFLRTLMIRNTLGGELMV 227
>gi|308272258|emb|CBX28864.1| Uncharacterized RNA methyltransferase CT0009 [uncultured
Desulfobacterium sp.]
Length = 470
Score = 79.7 bits (195), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 58/93 (62%), Gaps = 5/93 (5%)
Query: 130 EMEFSFGPKRW-FPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAA 188
+MEFS K+W P E +P G+ +ALGLH PG FDKVL+I CLLQ + NL+L
Sbjct: 136 KMEFSCSDKKWVLPSEFVP--GEKTAGFALGLHVPGTFDKVLDIKSCLLQPDTGNLILND 193
Query: 189 VQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
V+D+ ++ + + Y + SH GF + LMLR +
Sbjct: 194 VKDFIKNSDIPV--YGLRSHEGFWRFLMLRNSA 224
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 78 RGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAE 130
+G +EL +A+ GK + KV G V D+ +P ++ R+ +KK S+AE
Sbjct: 11 KGDFVELEITGMAFGGKAIAKV--DGLAVFVDKAVPSDRVKARIIKKKKSFAE 61
>gi|409101273|ref|ZP_11221297.1| TrmA family RNA methyltransferase [Pedobacter agri PB92]
Length = 470
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 58/92 (63%), Gaps = 3/92 (3%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+F KRW K + + D N ALG H P FDK+L+I+ C LQ EP+N + AV
Sbjct: 134 KLEFTFSNKRWLEKTDVERDEDFDMN-ALGFHVPLRFDKILDIEHCYLQDEPSNSIRNAV 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+ Y D + LS YD+ +H G L++L++RT S
Sbjct: 193 RKYALDNE--LSFYDLRNHEGVLRNLIIRTSS 222
>gi|441500910|ref|ZP_20983056.1| RNA methyltransferase, TrmA family [Fulvivirga imtechensis AK7]
gi|441435308|gb|ELR68706.1| RNA methyltransferase, TrmA family [Fulvivirga imtechensis AK7]
Length = 472
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 59/92 (64%), Gaps = 3/92 (3%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+F KRW KE + + D ++ ALG H PG FDK+L ID C LQ +P+N + AV
Sbjct: 130 KLEFTFSNKRWLTKEEI-DQSDDLDRDALGFHIPGRFDKILEIDHCYLQPDPSNAIRLAV 188
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+ Y ++ + +D+ + G+L++L++RT S
Sbjct: 189 KKYAKEHDITF--FDLITQQGYLRNLIIRTAS 218
>gi|373952930|ref|ZP_09612890.1| RNA methyltransferase, TrmA family [Mucilaginibacter paludis DSM
18603]
gi|373889530|gb|EHQ25427.1| RNA methyltransferase, TrmA family [Mucilaginibacter paludis DSM
18603]
Length = 475
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 59/92 (64%), Gaps = 4/92 (4%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++E++F KRW R D+++ ALG H PG FDK+L ++ C LQ++P+N + +
Sbjct: 134 KLEYTFSNKRWLYDGE--NRDDNVDMNALGFHVPGRFDKILEVNHCYLQADPSNQIRNRI 191
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
DY R+ Q LS YD+ +H G L++L++RT +
Sbjct: 192 GDYAREHQ--LSFYDLRAHEGALRNLVIRTSA 221
>gi|325280541|ref|YP_004253083.1| RNA methyltransferase, TrmA family [Odoribacter splanchnicus DSM
20712]
gi|324312350|gb|ADY32903.1| RNA methyltransferase, TrmA family [Odoribacter splanchnicus DSM
20712]
Length = 477
Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+F KR+ +E + + D ALG H PG FDKV++ID C LQ +N + +
Sbjct: 131 KLEFTFSNKRFLTREEISREADIERTPALGFHVPGLFDKVVDIDHCCLQGSSSNEIRNFI 190
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+ Y GLS YD+ + GFL+ L++RT S
Sbjct: 191 KTYALKK--GLSFYDIRAQQGFLRTLIIRTAS 220
>gi|158521596|ref|YP_001529466.1| RNA methyltransferase [Desulfococcus oleovorans Hxd3]
gi|158510422|gb|ABW67389.1| RNA methyltransferase, TrmA family [Desulfococcus oleovorans Hxd3]
Length = 471
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 41/94 (43%), Positives = 57/94 (60%), Gaps = 5/94 (5%)
Query: 126 GSYAEMEFSFGPKRWFPKESLPKRGDHIE-NYALGLHAPGFFDKVLNIDKCLLQSEPANL 184
G +MEFSF +RW E + ++I+ ++ALGLH PG F KV+++D CLL EP N
Sbjct: 134 GYRNKMEFSFADRRWLLPEEMEM--ENIDTSFALGLHVPGTFHKVIDVDACLLLPEPGNA 191
Query: 185 VLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR 218
+L V+ Y R G+ Y + SH GF + LMLR
Sbjct: 192 ILGDVRAYARAS--GVPAYGLKSHQGFWRFLMLR 223
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 7/73 (9%)
Query: 76 PIR-GQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAEME-- 132
P+R GQ ++L E+LA+ G+G+ +V G V D LPG++ R+TRKK ++AE
Sbjct: 10 PVRKGQAVDLEIETLAFGGRGLARV--DGLAVFVDHTLPGDRVSARITRKKSNFAEARLL 67
Query: 133 --FSFGPKRWFPK 143
S P R P+
Sbjct: 68 EVLSPSPFRVLPQ 80
>gi|255533504|ref|YP_003093876.1| TrmA family RNA methyltransferase [Pedobacter heparinus DSM 2366]
gi|255346488|gb|ACU05814.1| RNA methyltransferase, TrmA family [Pedobacter heparinus DSM 2366]
Length = 481
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 60/98 (61%), Gaps = 8/98 (8%)
Query: 130 EMEFSFGPKRWFPKESLPKRGD------HIENYALGLHAPGFFDKVLNIDKCLLQSEPAN 183
++E++F KRW K + + + +E ALG H P FDK+L+I+ C LQ+EP+N
Sbjct: 135 KLEYTFSNKRWLNKTDMMEGAETGAPNPELEMNALGFHVPLRFDKILDIEHCYLQAEPSN 194
Query: 184 LVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+ V+DY + GLS YD+ +H G L++L++RT S
Sbjct: 195 TIRNEVRDYAL--KAGLSFYDLRNHEGSLRNLVIRTSS 230
>gi|397690143|ref|YP_006527397.1| RNA methyltransferase, TrmA family [Melioribacter roseus P3M]
gi|395811635|gb|AFN74384.1| RNA methyltransferase, TrmA family [Melioribacter roseus P3M]
Length = 481
Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 58/90 (64%), Gaps = 3/90 (3%)
Query: 130 EMEFSFGPKRWFPKESLPKRGD-HIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAA 188
+MEFSF KRW + + + +N+ALGLH PG +DKVL+ID+C LQSE +N +L
Sbjct: 140 KMEFSFANKRWLSENEINSMQEIKDKNFALGLHIPGMYDKVLDIDECFLQSEMSNEILNF 199
Query: 189 VQDYWRDPQLGLSPYDVHSHSGFLKHLMLR 218
+ +++ + Y +H+G+L++L+++
Sbjct: 200 TRSFFKGKNATI--YSTETHTGYLRNLVIK 227
>gi|387793511|ref|YP_006258576.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Solitalea canadensis
DSM 3403]
gi|379656344|gb|AFD09400.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Solitalea canadensis
DSM 3403]
Length = 468
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 77/139 (55%), Gaps = 9/139 (6%)
Query: 87 ESLAYKGKGVCKVADTGFVVLCDRV--LPGEKFIGRVTRKKGSY--AEMEFSFGPKRWFP 142
+ L+Y+G+ K V +R+ + E I +K +Y +ME++F KRW
Sbjct: 88 QHLSYEGQ--LKFKQKQVVDALERIGGISTESLIPIFGSEKTTYYRNKMEYTFSNKRWLT 145
Query: 143 KESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSP 202
+E + + ++E ALG H P FDK+++I C LQ +P+N + A++ Y + Q LS
Sbjct: 146 EEDM-QNAANLEQDALGFHVPLRFDKIIDIQHCYLQQDPSNEIRNAIRAYALENQ--LSF 202
Query: 203 YDVHSHSGFLKHLMLRTGS 221
YD+ H G L++L++RT S
Sbjct: 203 YDLKEHKGQLRNLIIRTAS 221
>gi|224369754|ref|YP_002603918.1| protein TrmA [Desulfobacterium autotrophicum HRM2]
gi|223692471|gb|ACN15754.1| TrmA [Desulfobacterium autotrophicum HRM2]
Length = 462
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/111 (38%), Positives = 61/111 (54%), Gaps = 10/111 (9%)
Query: 111 VLPGEKFIGRVTRKKGSYAEMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVL 170
V+P K G R K MEFS RW E L + D + + LGLH PG FD+++
Sbjct: 118 VIPSRKIFG--FRNK-----MEFSCTTSRWLMPEDL-ENPDIKKGFGLGLHVPGTFDRII 169
Query: 171 NIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+IDKCL+Q + N ++ V+ Y + G+ Y + SH GF + LMLR+ S
Sbjct: 170 DIDKCLIQPDTGNQIMQVVRQYIVES--GVPAYGLRSHEGFWRFLMLRSSS 218
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 36/56 (64%), Gaps = 7/56 (12%)
Query: 75 KPIRGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAE 130
KP+ ELE++ LA+ GKG+ K G+ + DR +PG++ I R+T+KK SY E
Sbjct: 7 KPV---ELEII--DLAFGGKGLAK--PDGYPIFVDRTVPGDRIIARITKKKKSYGE 55
>gi|354605354|ref|ZP_09023343.1| hypothetical protein HMPREF9450_02258 [Alistipes indistinctus YIT
12060]
gi|353347933|gb|EHB92209.1| hypothetical protein HMPREF9450_02258 [Alistipes indistinctus YIT
12060]
Length = 469
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 56/92 (60%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+F KRW E + + +N ALG H P FDKVL+I KC LQ++P+N + AV
Sbjct: 133 KLEFTFSSKRWLTDEEVASGTEFADNEALGFHIPNMFDKVLDIRKCWLQADPSNPIRMAV 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+++ G S Y H+G +++L++RT S
Sbjct: 193 REFC--IAGGYSFYKPREHAGLMRNLIVRTSS 222
>gi|392398405|ref|YP_006435006.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Flexibacter litoralis
DSM 6794]
gi|390529483|gb|AFM05213.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Flexibacter litoralis
DSM 6794]
Length = 472
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 56/92 (60%), Gaps = 3/92 (3%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+F +RW E + G +N ALG H PG +DK++++++C LQ+EP+N + AV
Sbjct: 137 KLEFTFSSRRWLTSEQIAT-GQDFDNRALGFHIPGRYDKLVDLNECFLQAEPSNSIRLAV 195
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
Y R+ L Y+V + G L++LM+R
Sbjct: 196 NKYAREHDLEF--YNVMACEGLLRNLMIRNSQ 225
>gi|345867261|ref|ZP_08819276.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bizionia argentinensis
JUB59]
gi|344048304|gb|EGV43913.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bizionia argentinensis
JUB59]
Length = 470
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSF RW E + D + ALG H PG +DK+L+I KC LQ++P+N + AV
Sbjct: 134 KMEFSFSDSRWLTVEEIQSDEDLGDRNALGFHIPGMWDKILDIKKCHLQADPSNAIRNAV 193
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+D+ GL ++ + G L+ +M+RT S
Sbjct: 194 RDF--SIANGLEFFNTRNQHGLLRTMMIRTSS 223
>gi|408492297|ref|YP_006868666.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Psychroflexus torquis
ATCC 700755]
gi|408469572|gb|AFU69916.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Psychroflexus torquis
ATCC 700755]
Length = 471
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 57/98 (58%), Gaps = 5/98 (5%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSF RW ++ + D + ALG H PG +DK+LN++KC LQ +P+N + +
Sbjct: 134 KMEFSFSNSRWLTEKEISSEVDITDKNALGFHIPGMWDKILNLEKCHLQGDPSNAIRNKI 193
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMI 224
+D+ + L ++ +G L+ LM+R TG FMI
Sbjct: 194 RDFATEHDLEF--FNPRDKTGLLRTLMIRTSSTGEFMI 229
>gi|237709870|ref|ZP_04540351.1| RNA methyltransferase [Bacteroides sp. 9_1_42FAA]
gi|229455963|gb|EEO61684.1| RNA methyltransferase [Bacteroides sp. 9_1_42FAA]
Length = 473
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 57/92 (61%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+F KRW +E + + + + A+G H PG FDKVL IDKC LQ + +N + A+
Sbjct: 133 KLEFTFSNKRWLTEEEVKEDVKYDQMNAVGFHIPGAFDKVLAIDKCWLQDDISNQIRNAI 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+DY + S +++ S G L++LM+RT S
Sbjct: 193 RDYAYEH--NYSFFNLRSQEGMLRNLMIRTSS 222
>gi|265753522|ref|ZP_06088877.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp.
3_1_33FAA]
gi|423231547|ref|ZP_17217950.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides dorei
CL02T00C15]
gi|423238336|ref|ZP_17219452.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides dorei
CL03T12C01]
gi|423246134|ref|ZP_17227207.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides dorei
CL02T12C06]
gi|263235236|gb|EEZ20760.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp.
3_1_33FAA]
gi|392627177|gb|EIY21216.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides dorei
CL02T00C15]
gi|392636766|gb|EIY30646.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides dorei
CL02T12C06]
gi|392648019|gb|EIY41709.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides dorei
CL03T12C01]
Length = 473
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 57/92 (61%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+F KRW +E + + + + A+G H PG FDKVL IDKC LQ + +N + A+
Sbjct: 133 KLEFTFSNKRWLTEEEVKEDVKYDQMNAVGFHIPGAFDKVLAIDKCWLQDDISNQIRNAI 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+DY + S +++ S G L++LM+RT S
Sbjct: 193 RDYAYEH--NYSFFNLRSQEGMLRNLMIRTSS 222
>gi|212693125|ref|ZP_03301253.1| hypothetical protein BACDOR_02632 [Bacteroides dorei DSM 17855]
gi|212664230|gb|EEB24802.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides dorei DSM
17855]
Length = 473
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 57/92 (61%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+F KRW +E + + + + A+G H PG FDKVL IDKC LQ + +N + A+
Sbjct: 133 KLEFTFSNKRWLTEEEVKEDVKYDQMNAVGFHIPGAFDKVLAIDKCWLQDDISNQIRNAI 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+DY + S +++ S G L++LM+RT S
Sbjct: 193 RDYAYEH--NYSFFNLRSQEGMLRNLMIRTSS 222
>gi|345515514|ref|ZP_08795016.1| RNA methyltransferase [Bacteroides dorei 5_1_36/D4]
gi|229436147|gb|EEO46224.1| RNA methyltransferase [Bacteroides dorei 5_1_36/D4]
Length = 473
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 57/92 (61%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+F KRW +E + + + + A+G H PG FDKVL IDKC LQ + +N + A+
Sbjct: 133 KLEFTFSNKRWLTEEEVKEDVKYDQMNAVGFHIPGAFDKVLAIDKCWLQDDISNQIRNAI 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+DY + S +++ S G L++LM+RT S
Sbjct: 193 RDYAYEH--NYSFFNLRSQEGMLRNLMIRTSS 222
>gi|300770388|ref|ZP_07080267.1| 23S rRNA (uracil-5-)-methyltransferase [Sphingobacterium
spiritivorum ATCC 33861]
gi|300762864|gb|EFK59681.1| 23S rRNA (uracil-5-)-methyltransferase [Sphingobacterium
spiritivorum ATCC 33861]
Length = 469
Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 58/92 (63%), Gaps = 4/92 (4%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++E++F KRW S+ + +E ALG H PG FDK+L+ID C LQ +P+N + +
Sbjct: 134 KLEYTFSNKRWLT--SVDDANEGLEMNALGFHVPGRFDKILDIDHCYLQQDPSNAIRNQI 191
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+ + + Q +S YD+ H+G L++L++RT S
Sbjct: 192 RAFAIEHQ--ISFYDLREHAGALRNLIIRTAS 221
>gi|120436238|ref|YP_861924.1| tRNA (uracil-5-)-methyltransferase [Gramella forsetii KT0803]
gi|117578388|emb|CAL66857.1| tRNA (uracil-5-)-methyltransferase [Gramella forsetii KT0803]
Length = 469
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 57/98 (58%), Gaps = 5/98 (5%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSF RW +E + D + ALG H PG +DK+L+I+KC LQ++P+N + V
Sbjct: 133 KMEFSFSDSRWLTQEEIQSGEDIQQRNALGFHIPGMWDKILDIEKCHLQADPSNAIRNFV 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMI 224
+++ + L ++ + G L+ LM+R TG MI
Sbjct: 193 KEFAIENDLAF--FNTRNQEGLLRTLMIRTTSTGEIMI 228
>gi|301060814|ref|ZP_07201628.1| 23S rRNA (uracil-5-)-methyltransferase RumA [delta proteobacterium
NaphS2]
gi|300445063|gb|EFK09014.1| 23S rRNA (uracil-5-)-methyltransferase RumA [delta proteobacterium
NaphS2]
Length = 466
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 60/94 (63%), Gaps = 5/94 (5%)
Query: 126 GSYAEMEFSFGPKRWFPKESLP-KRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANL 184
G +MEFSF +RW+ + LP ++ D EN+ALGLH PG + KV++++ CLLQ + N
Sbjct: 128 GYRNKMEFSFSDRRWYLPDELPFEKKD--ENFALGLHVPGTYHKVIDMEACLLQQQTGND 185
Query: 185 VLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR 218
+L AV Y ++ + + Y + SH G+ ++L +R
Sbjct: 186 ILRAVAQYVKNSNVPV--YGLKSHEGYWRYLTIR 217
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 78 RGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAE 130
+GQ LEL + +AY G+G+ ++ GFV+ +PG+K + R+ +KK YAE
Sbjct: 7 KGQTLELDIQKMAYGGRGIARL--NGFVIFVRGTVPGDKILARIFKKKKDYAE 57
>gi|440747340|ref|ZP_20926599.1| RNA methyltransferase, TrmA family [Mariniradius saccharolyticus
AK6]
gi|436484260|gb|ELP40264.1| RNA methyltransferase, TrmA family [Mariniradius saccharolyticus
AK6]
Length = 468
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 58/92 (63%), Gaps = 3/92 (3%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+++F+F RW +E + G E ALG H P FDK+++I+ C LQSEP+N V ++
Sbjct: 132 KLDFTFSNSRWLTREEI-NSGKEFERNALGFHIPKMFDKIIDIEHCYLQSEPSNEVRNSL 190
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+++ + GLS YD+ + G L++L++RT S
Sbjct: 191 KEFALNE--GLSFYDLRNQVGLLRNLIIRTTS 220
>gi|163755043|ref|ZP_02162164.1| hypothetical protein KAOT1_03477 [Kordia algicida OT-1]
gi|161325110|gb|EDP96438.1| hypothetical protein KAOT1_03477 [Kordia algicida OT-1]
Length = 470
Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 55/93 (59%), Gaps = 2/93 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSF RW +E + D + ALG H PG +DK+L+I+KC LQ++P+N + +
Sbjct: 133 KMEFSFSDSRWLTQEEVDSDEDLGDRNALGFHIPGMWDKILDINKCHLQADPSNAIRNTI 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGSF 222
+++ + + ++ +G L+ LM+RT S
Sbjct: 193 KEFATENNIAF--FNTRHQTGLLRTLMIRTSSI 223
>gi|149278953|ref|ZP_01885087.1| putative RNA methyltransferase [Pedobacter sp. BAL39]
gi|149230232|gb|EDM35617.1| putative RNA methyltransferase [Pedobacter sp. BAL39]
Length = 487
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 39/95 (41%), Positives = 61/95 (64%), Gaps = 5/95 (5%)
Query: 130 EMEFSFGPKRWFPKESL--PKRGD-HIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVL 186
++E++F KRW K + P+ GD +E ALG H P FDK+L+ID C LQ++P+N +
Sbjct: 135 KLEYTFSNKRWLNKTDMATPEDGDVALEMNALGFHVPLRFDKILDIDHCYLQADPSNNLR 194
Query: 187 AAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
V+ Y + GL+ YD+ +H G L++L++RT S
Sbjct: 195 NQVRAYALEH--GLTFYDLRNHEGNLRNLIIRTSS 227
>gi|313206559|ref|YP_004045736.1| 23S rRNA m(5)u-1939 methyltransferase [Riemerella anatipestifer
ATCC 11845 = DSM 15868]
gi|383485863|ref|YP_005394775.1| 23S rRNA m(5)ugene939 methyltransferase [Riemerella anatipestifer
ATCC 11845 = DSM 15868]
gi|312445875|gb|ADQ82230.1| 23S rRNA m(5)U-1939 methyltransferase [Riemerella anatipestifer
ATCC 11845 = DSM 15868]
gi|380460548|gb|AFD56232.1| 23S rRNA m(5)ugene939 methyltransferase [Riemerella anatipestifer
ATCC 11845 = DSM 15868]
Length = 469
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSF RW E + D ALG H PG + K+L++ +C LQ P+N + AV
Sbjct: 133 KMEFSFSNARWLTSEEILNGADIDNKNALGFHIPGMWSKILDLKECFLQETPSNEIRLAV 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
++Y QL +DV + GFL+ LMLR S
Sbjct: 193 KNYADANQLEF--FDVKNQEGFLRTLMLRQNS 222
>gi|386321450|ref|YP_006017612.1| SAM-dependent methyltransferase, tRNA
(uracil-5-)-methyltransferase-like protein [Riemerella
anatipestifer RA-GD]
gi|416110164|ref|ZP_11591883.1| RNA methyltransferase [Riemerella anatipestifer RA-YM]
gi|442314238|ref|YP_007355541.1| hypothetical protein G148_0543 [Riemerella anatipestifer RA-CH-2]
gi|315023445|gb|EFT36453.1| RNA methyltransferase [Riemerella anatipestifer RA-YM]
gi|325335993|gb|ADZ12267.1| SAM-dependent methyltransferase, tRNA
(uracil-5-)-methyltransferase-like protein [Riemerella
anatipestifer RA-GD]
gi|441483161|gb|AGC39847.1| hypothetical protein G148_0543 [Riemerella anatipestifer RA-CH-2]
Length = 469
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSF RW E + D ALG H PG + K+L++ +C LQ P+N + AV
Sbjct: 133 KMEFSFSNARWLTSEEILNGADIDNKNALGFHIPGMWSKILDLKECFLQETPSNEIRLAV 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
++Y QL +DV + GFL+ LMLR S
Sbjct: 193 KNYADANQLEF--FDVKNQEGFLRTLMLRQNS 222
>gi|407451599|ref|YP_006723323.1| hypothetical protein B739_0823 [Riemerella anatipestifer RA-CH-1]
gi|403312583|gb|AFR35424.1| hypothetical protein B739_0823 [Riemerella anatipestifer RA-CH-1]
Length = 469
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSF RW E + D ALG H PG + K+L++ +C LQ P+N + AV
Sbjct: 133 KMEFSFSNARWLTSEEILNGADIDNKNALGFHIPGMWSKILDLKECFLQETPSNEIRLAV 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
++Y QL +DV + GFL+ LMLR S
Sbjct: 193 KNYADAHQLEF--FDVKNQEGFLRTLMLRQNS 222
>gi|325297416|ref|YP_004257333.1| RNA methyltransferase, TrmA family [Bacteroides salanitronis DSM
18170]
gi|324316969|gb|ADY34860.1| RNA methyltransferase, TrmA family [Bacteroides salanitronis DSM
18170]
Length = 474
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 57/92 (61%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+F KRW +E + + + + A+G H PG FDKVL I+KC LQ + +N + A+
Sbjct: 133 KLEFTFSNKRWLTEEEVKQDVKYEQMNAVGFHIPGAFDKVLAIEKCWLQDDISNQIRNAI 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+DY + Q +++ + G L+++M+RT S
Sbjct: 193 RDYAYEHQYAF--FNLRTQEGMLRNMMVRTSS 222
>gi|198274964|ref|ZP_03207496.1| hypothetical protein BACPLE_01123 [Bacteroides plebeius DSM 17135]
gi|198272411|gb|EDY96680.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides plebeius
DSM 17135]
Length = 472
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+F KRW +E + + + + A+G H PG FDKVL IDKC LQ + +N + AV
Sbjct: 133 KLEFTFSNKRWLTEEEVKQDVKYDQMNAVGFHIPGAFDKVLAIDKCWLQDDISNQIRNAV 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+DY +D+ + G L+++M+RT S
Sbjct: 193 RDYAYAHNFPF--FDLRTQEGLLRNIMIRTSS 222
>gi|294775567|ref|ZP_06741077.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides vulgatus
PC510]
gi|294450617|gb|EFG19107.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides vulgatus
PC510]
Length = 473
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 57/92 (61%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+F KRW +E + + + + A+G H PG FDKVL I+KC LQ + +N + A+
Sbjct: 133 KLEFTFSNKRWLTEEEVKEDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNQIRNAI 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+DY + S +++ S G L++LM+RT S
Sbjct: 193 RDYAYEH--NYSFFNLRSQEGMLRNLMIRTSS 222
>gi|423314734|ref|ZP_17292667.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides vulgatus
CL09T03C04]
gi|392681481|gb|EIY74839.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides vulgatus
CL09T03C04]
Length = 473
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 57/92 (61%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+F KRW +E + + + + A+G H PG FDKVL I+KC LQ + +N + A+
Sbjct: 133 KLEFTFSNKRWLTEEEVKEDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNQIRNAI 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+DY + S +++ S G L++LM+RT S
Sbjct: 193 RDYAYEH--NYSFFNLRSQEGMLRNLMIRTSS 222
>gi|319641039|ref|ZP_07995743.1| RNA methyltransferase [Bacteroides sp. 3_1_40A]
gi|345519307|ref|ZP_08798734.1| RNA methyltransferase [Bacteroides sp. 4_3_47FAA]
gi|254834751|gb|EET15060.1| RNA methyltransferase [Bacteroides sp. 4_3_47FAA]
gi|317387283|gb|EFV68158.1| RNA methyltransferase [Bacteroides sp. 3_1_40A]
Length = 473
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 57/92 (61%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+F KRW +E + + + + A+G H PG FDKVL I+KC LQ + +N + A+
Sbjct: 133 KLEFTFSNKRWLTEEEVKEDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNQIRNAI 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+DY + S +++ S G L++LM+RT S
Sbjct: 193 RDYAYEH--NYSFFNLRSQEGMLRNLMIRTSS 222
>gi|150005861|ref|YP_001300605.1| RNA methyltransferase [Bacteroides vulgatus ATCC 8482]
gi|149934285|gb|ABR40983.1| RNA methyltransferase [Bacteroides vulgatus ATCC 8482]
Length = 473
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 57/92 (61%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+F KRW +E + + + + A+G H PG FDKVL I+KC LQ + +N + A+
Sbjct: 133 KLEFTFSNKRWLTEEEVKEDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNQIRNAI 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+DY + S +++ S G L++LM+RT S
Sbjct: 193 RDYAYEH--NYSFFNLRSQEGMLRNLMIRTSS 222
>gi|381188557|ref|ZP_09896118.1| RNA methyltransferase, TrmA family [Flavobacterium frigoris PS1]
gi|379649534|gb|EIA08108.1| RNA methyltransferase, TrmA family [Flavobacterium frigoris PS1]
Length = 471
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/92 (40%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSF RW + + D ALG H P +DK+L+I+KC LQ +P+N + V
Sbjct: 134 KMEFSFSNSRWLTEAEIGSTEDLGNRNALGFHIPKMWDKILDINKCHLQEDPSNAIRNEV 193
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+D+ GL+ ++ HSG L+ LMLRT S
Sbjct: 194 RDFANAN--GLTFFNPREHSGLLRTLMLRTSS 223
>gi|227538859|ref|ZP_03968908.1| TrmA family RNA methyltransferase [Sphingobacterium spiritivorum
ATCC 33300]
gi|227241368|gb|EEI91383.1| TrmA family RNA methyltransferase [Sphingobacterium spiritivorum
ATCC 33300]
Length = 469
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 57/92 (61%), Gaps = 4/92 (4%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++E++F KRW S+ + +E ALG H PG FDK+L+ID C LQ +P+N + +
Sbjct: 134 KLEYTFSNKRWLT--SVDDANEGLEMNALGFHVPGRFDKILDIDHCYLQQDPSNAIRNHI 191
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+ + Q +S YD+ H+G L++L++RT S
Sbjct: 192 RAFAIKHQ--ISFYDLREHAGALRNLIIRTAS 221
>gi|392389948|ref|YP_006426551.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ornithobacterium
rhinotracheale DSM 15997]
gi|390521026|gb|AFL96757.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ornithobacterium
rhinotracheale DSM 15997]
Length = 471
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 56/98 (57%), Gaps = 5/98 (5%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EFSF +RW ++ + + + + ALG H PG + K+L++ KC LQ +P+N + A+
Sbjct: 135 KLEFSFSNQRWITEDEIAQNKEITDRNALGFHIPGMWSKILDVKKCWLQRDPSNAIRLAI 194
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMI 224
+DY L +D GFL+ LM+R TG M+
Sbjct: 195 KDYAEKHNLAF--FDPVKQEGFLRTLMIRTTTTGEVMV 230
>gi|390955554|ref|YP_006419312.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Aequorivita
sublithincola DSM 14238]
gi|390421540|gb|AFL82297.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Aequorivita
sublithincola DSM 14238]
Length = 469
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 60/95 (63%), Gaps = 8/95 (8%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENY-ALGLHAPGFFDKVLNIDKCLLQSEPANLVLAA 188
+MEFSF +W + + K G IEN ALG H PG +DK+L++D C LQ++P+N A
Sbjct: 133 KMEFSFSDNKWLTLDQI-KSGKVIENRNALGFHIPGMWDKILDLDICYLQADPSN----A 187
Query: 189 VQDYW--RDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
++D+ + +L L+ ++ + GFL+ LM+RT S
Sbjct: 188 IRDFIKAKAEELNLTFFNTRNQEGFLRTLMIRTSS 222
>gi|300775961|ref|ZP_07085820.1| 23S rRNA (uracil-5-)-methyltransferase [Chryseobacterium gleum ATCC
35910]
gi|300505094|gb|EFK36233.1| 23S rRNA (uracil-5-)-methyltransferase [Chryseobacterium gleum ATCC
35910]
Length = 470
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSF RW + + + ALG H PG + K+L++ +C LQ +P+N + AV
Sbjct: 134 KMEFSFSNARWLTQYEISSEENFGSKDALGFHIPGMWSKILDLKECFLQEDPSNAIRLAV 193
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
++Y + GL +DV + GFL+ LM+R S
Sbjct: 194 KEYGVNN--GLDFFDVRNQEGFLRTLMMRQNS 223
>gi|395213246|ref|ZP_10400131.1| RNA methyltransferase [Pontibacter sp. BAB1700]
gi|394456825|gb|EJF11071.1| RNA methyltransferase [Pontibacter sp. BAB1700]
Length = 470
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 58/102 (56%), Gaps = 6/102 (5%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+F W E + K G+ E ALG H PG FDK+L+I C LQ EP+N + AV
Sbjct: 135 KLEFTFSNYGWLTNEQI-KSGEEHERRALGFHMPGRFDKILDIQNCYLQPEPSNSIRLAV 193
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMICAPV 228
+DY R L +D +G+L++L++R TG M+ V
Sbjct: 194 RDYARANNLVF--FDKLRMNGWLRNLIIRTANTGELMVIVQV 233
>gi|291514875|emb|CBK64085.1| 23S rRNA m(5)U-1939 methyltransferase [Alistipes shahii WAL 8301]
Length = 469
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 56/92 (60%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+F +RW +E + GD + A+G H PG FDKVL+I KC LQ +P+N +
Sbjct: 133 KLEFTFADRRWLTREEIESAGDIGDAPAVGFHIPGMFDKVLDIRKCWLQPDPSNGIRMEA 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+ + + G + ++ SH G ++++++RT S
Sbjct: 193 KRFC--VENGYTFHNARSHEGLMRNMIVRTAS 222
>gi|189501463|ref|YP_001960933.1| RNA methyltransferase, TrmA family [Chlorobium phaeobacteroides
BS1]
gi|189496904|gb|ACE05452.1| RNA methyltransferase, TrmA family [Chlorobium phaeobacteroides
BS1]
Length = 480
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/90 (42%), Positives = 55/90 (61%), Gaps = 3/90 (3%)
Query: 130 EMEFSFGPKRWF-PKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAA 188
++EFS KR+ P+E +R + +++ALG HAPG F+KVL I+ C L E N L
Sbjct: 138 KVEFSCSSKRYLMPEELKMERLEKSKDFALGFHAPGNFEKVLEIEACYLAKESMNNALTV 197
Query: 189 VQDYWRDPQLGLSPYDVHSHSGFLKHLMLR 218
+ + + GLSPY H+GFL++LMLR
Sbjct: 198 TRAFALEE--GLSPYAAREHTGFLRNLMLR 225
>gi|313205382|ref|YP_004044039.1| 23S rRNA m(5)u-1939 methyltransferase [Paludibacter propionicigenes
WB4]
gi|312444698|gb|ADQ81054.1| 23S rRNA m(5)U-1939 methyltransferase [Paludibacter propionicigenes
WB4]
Length = 469
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/98 (39%), Positives = 57/98 (58%), Gaps = 5/98 (5%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+F KRW E + + A+G H PG FDKVL+I+KC LQ+E +N + V
Sbjct: 133 KLEFTFSNKRWRTNEEIAEGKIFDTMNAVGFHIPGQFDKVLDINKCWLQTEDSNEIRNEV 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMI 224
+ Y + +L +D+ S GFL+ LM+R TG MI
Sbjct: 193 RRYALEHELTF--FDLRSQEGFLRTLMVRTTSTGELMI 228
>gi|326798666|ref|YP_004316485.1| TrmA family RNA methyltransferase [Sphingobacterium sp. 21]
gi|326549430|gb|ADZ77815.1| RNA methyltransferase, TrmA family [Sphingobacterium sp. 21]
Length = 476
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 57/100 (57%), Gaps = 6/100 (6%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++E++F KRW E + +H E ALG H P FDK+L I+ C LQ +P+N + +
Sbjct: 134 KLEYTFSNKRWLTTEDIASGKEH-EMSALGFHVPLRFDKILGIEHCYLQKDPSNAIRNEL 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMICA 226
+ + G+S YD+ +H G L++LM+R TG M+
Sbjct: 193 KQLTIEK--GISYYDLRNHEGALRNLMIRTSTTGDLMVVV 230
>gi|189463386|ref|ZP_03012171.1| hypothetical protein BACCOP_04105 [Bacteroides coprocola DSM 17136]
gi|189429815|gb|EDU98799.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides coprocola
DSM 17136]
Length = 489
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 56/92 (60%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+F KRW +E + + + + A+G H PG FDKVL I+KC LQ + +N + A+
Sbjct: 150 KLEFTFSNKRWLTEEEVKQDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNQIRNAI 209
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+D+ + +D+ S G L+++M+RT S
Sbjct: 210 RDFAYEHNYEF--FDLRSQEGMLRNMMVRTSS 239
>gi|167752279|ref|ZP_02424406.1| hypothetical protein ALIPUT_00523 [Alistipes putredinis DSM 17216]
gi|167660520|gb|EDS04650.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Alistipes putredinis
DSM 17216]
Length = 469
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 57/92 (61%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+F +RW E + ++G+ + ALG H PG FDKVL+I+KC LQ +P+N +
Sbjct: 133 KLEFTFAERRWLTYEEIAEKGEIADAPALGFHIPGMFDKVLDIEKCWLQPDPSNAIREET 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+ + + G + ++ H G ++++++RT S
Sbjct: 193 RRFCL--EHGYTFHNPREHRGLMRNMVVRTAS 222
>gi|298208283|ref|YP_003716462.1| RNA methyltransferase [Croceibacter atlanticus HTCC2559]
gi|83848204|gb|EAP86074.1| putative RNA methyltransferase [Croceibacter atlanticus HTCC2559]
Length = 470
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSF RW + + + + ALG H PG +DK+L+I KC LQ +P+N + +V
Sbjct: 134 KMEFSFSNNRWMTLDEIKSDVEITDKDALGFHIPGMWDKILDIKKCHLQEDPSNAIRNSV 193
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+++ L +DV G L+ LM+RT S
Sbjct: 194 KEFALKHNLDF--FDVRKQEGLLRTLMIRTAS 223
>gi|218782690|ref|YP_002434008.1| TrmA family RNA methyltransferase [Desulfatibacillum alkenivorans
AK-01]
gi|218764074|gb|ACL06540.1| RNA methyltransferase, TrmA family [Desulfatibacillum alkenivorans
AK-01]
Length = 463
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 2/93 (2%)
Query: 126 GSYAEMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLV 185
G +MEFS RW + + + ++ALGLH PG F KV++I+KCLLQ++ AN +
Sbjct: 126 GYRNKMEFSCSDHRWLLPDEIALEEEVDRSFALGLHVPGTFHKVMDIEKCLLQTDDANDI 185
Query: 186 LAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR 218
L AV Y +D L Y + SH GF + ++R
Sbjct: 186 LQAVHAYMKDSP--LPAYGLKSHEGFWRFAVIR 216
Score = 43.1 bits (100), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 78 RGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYA 129
+GQ L+L E + G+G+C+V G V ++ PG+K R+ RKK S+A
Sbjct: 5 KGQILDLSIEKTIFGGQGLCRV--DGLAVFVEKTAPGDKVKARIVRKKKSFA 54
>gi|408371912|ref|ZP_11169667.1| RNA methyltransferase [Galbibacter sp. ck-I2-15]
gi|407742648|gb|EKF54240.1| RNA methyltransferase [Galbibacter sp. ck-I2-15]
Length = 469
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSF RW E + D + ALG H PG +DK+L++ C LQ +P+N + AV
Sbjct: 133 KMEFSFSDSRWLTAEEISSDQDLGDRNALGFHIPGMWDKILDLKSCHLQQDPSNAIRTAV 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+++ + ++ S +G L+ LM+RT S
Sbjct: 193 KEFALKNNMEF--FNTRSQTGLLRTLMIRTSS 222
>gi|365875322|ref|ZP_09414851.1| RNA methyltransferase [Elizabethkingia anophelis Ag1]
gi|442588283|ref|ZP_21007095.1| RNA methyltransferase, TrmA family protein [Elizabethkingia
anophelis R26]
gi|365756970|gb|EHM98880.1| RNA methyltransferase [Elizabethkingia anophelis Ag1]
gi|442561988|gb|ELR79211.1| RNA methyltransferase, TrmA family protein [Elizabethkingia
anophelis R26]
Length = 470
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSF RW E + + + ALG H PG + K+L++ +C LQ +P+N + AV
Sbjct: 133 KMEFSFSNARWLTLEEVNSTEEIADRNALGFHIPGQWSKILDLKECFLQEDPSNNIRLAV 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
++Y + L +DV + GFL+ LM+R S
Sbjct: 193 KEYAEENNLEF--FDVRNQEGFLRTLMMRQNS 222
>gi|386820572|ref|ZP_10107788.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Joostella marina DSM
19592]
gi|386425678|gb|EIJ39508.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Joostella marina DSM
19592]
Length = 469
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSF RW E + D + ALG H PG +DK+L+I+KC LQ +P+N + AV
Sbjct: 133 KMEFSFSDSRWLTLEEIQSDKDLGDKNALGFHIPGMWDKILDINKCHLQEDPSNAIRTAV 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+D+ + ++ + G L+ +M+RT S
Sbjct: 193 KDFA--IKHNFEFFNPRNQKGLLRTMMIRTSS 222
>gi|452824611|gb|EME31613.1| RNA methyltransferase family protein [Galdieria sulphuraria]
Length = 552
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 41/114 (35%), Positives = 60/114 (52%), Gaps = 21/114 (18%)
Query: 126 GSYAEMEFSFGPKRWFPKESLP--------------KRGDHI-----ENYALGLHAPGFF 166
G +MEFSFG +RW P + L +R + + N+ LGL G F
Sbjct: 218 GYRNKMEFSFGTRRWIPGDHLSESERVSLVIEENKLRRQEAVFETNEGNFVLGLKPSGHF 277
Query: 167 DKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
DKVL I+ C +Q AN ++ VQ R ++ + YDV+SH GFL++L++RT
Sbjct: 278 DKVLPIEYCHIQETIANDIMKLVQK--RTSEMHTTAYDVYSHQGFLRNLVIRTA 329
>gi|110638905|ref|YP_679114.1| RNA methyltransferase [Cytophaga hutchinsonii ATCC 33406]
gi|110281586|gb|ABG59772.1| 23S rRNA m(5)U-1939 methyltransferase [Cytophaga hutchinsonii ATCC
33406]
Length = 479
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 56/90 (62%), Gaps = 4/90 (4%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+++F+F KRW +E + D + Y LG H PG FD+V++I C LQ EP+N + V
Sbjct: 131 KLDFTFSNKRWLLEEEMSLEHDTL--YGLGFHLPGKFDRVIDISTCHLQPEPSNSIRLEV 188
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRT 219
+ Y + GL+ Y+V +H G +++L++RT
Sbjct: 189 KAYAL--KHGLTFYNVRAHEGLMRNLIIRT 216
>gi|406672871|ref|ZP_11080096.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bergeyella zoohelcum
CCUG 30536]
gi|405587415|gb|EKB61143.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bergeyella zoohelcum
CCUG 30536]
Length = 470
Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSF RW +E + D + ALG H PG + K+L++ +C LQ P++ + AV
Sbjct: 134 KMEFSFSNARWLSQEEIDSDEDLGDRNALGFHIPGMWSKILDLKECHLQESPSDEIRLAV 193
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+ Y + GL +DV + GFL+ MLR S
Sbjct: 194 KKYAVEH--GLEFFDVRNQEGFLRTFMLRQNS 223
>gi|423315681|ref|ZP_17293586.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bergeyella zoohelcum
ATCC 43767]
gi|405585785|gb|EKB59588.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bergeyella zoohelcum
ATCC 43767]
Length = 470
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSF RW +E + D + ALG H PG + K+L++ +C LQ P++ + AV
Sbjct: 134 KMEFSFSNARWLSQEEIDSDEDLGDRNALGFHIPGMWSKILDLKECHLQESPSDEIRLAV 193
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+ Y + GL +DV + GFL+ MLR S
Sbjct: 194 KKYAVEH--GLEFFDVRNQEGFLRTFMLRQNS 223
>gi|194335110|ref|YP_002016970.1| RNA methyltransferase, TrmA family [Prosthecochloris aestuarii DSM
271]
gi|194312928|gb|ACF47323.1| RNA methyltransferase, TrmA family [Prosthecochloris aestuarii DSM
271]
Length = 478
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 54/90 (60%), Gaps = 3/90 (3%)
Query: 130 EMEFSFGPKRWF-PKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAA 188
++EFS KR+ P E + D +++ALG HAPG F+KVL ID C L N L+A
Sbjct: 136 KVEFSCSSKRYLLPHELSMETLDKSKDFALGFHAPGNFEKVLEIDTCYLAKPSMNEALSA 195
Query: 189 VQDYWRDPQLGLSPYDVHSHSGFLKHLMLR 218
+ + D GL PY +H+GFL++LMLR
Sbjct: 196 TRAFALDR--GLEPYAARAHTGFLRNLMLR 223
>gi|393784169|ref|ZP_10372336.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides salyersiae
CL02T12C01]
gi|392666976|gb|EIY60488.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides salyersiae
CL02T12C01]
Length = 454
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 60/105 (57%), Gaps = 8/105 (7%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+F KRW E + + + + A+G H PG FDKVL I+KC LQ++ +N + AV
Sbjct: 115 KLEFTFSDKRWLTYEEVKQEVKYDQMNAVGFHIPGAFDKVLAIEKCWLQNDISNRIRNAV 174
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS------FMICAPV 228
+DY + S ++ S G L+++++RT S +IC V
Sbjct: 175 RDYAYEH--NYSFINLRSQEGMLRNMIIRTSSTGELMVIIICKIV 217
>gi|383790502|ref|YP_005475076.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Spirochaeta africana
DSM 8902]
gi|383107036|gb|AFG37369.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Spirochaeta africana
DSM 8902]
Length = 420
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 63/108 (58%), Gaps = 3/108 (2%)
Query: 123 RKKGSYAEMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPA 182
+++G ++E++F +RW E + + I G H GFFD+VL++ +C Q EP+
Sbjct: 77 QERGYRNKLEYTFSRRRWLTPEEIAGGEEFIHRDGAGFHVRGFFDRVLDLQECHHQPEPS 136
Query: 183 NLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG-SFMICAPVM 229
N + V+D R +LG+S YD+ ++ G L+ LM+RT S + A VM
Sbjct: 137 NRLRLFVRDTAR--ELGISFYDISANEGDLRTLMVRTTQSGQVMAVVM 182
>gi|375256464|ref|YP_005015631.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Tannerella forsythia
ATCC 43037]
gi|363407618|gb|AEW21304.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Tannerella forsythia
ATCC 43037]
Length = 472
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+F KRW + + ++ E ALG H PG FDKVL+I +C LQ + +N + V
Sbjct: 133 KLEFTFSNKRWLTEREVASGIEYTEMNALGFHIPGMFDKVLDIRRCWLQDDVSNRIRLCV 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+++ + G +D+ + GF++ LM+RT S
Sbjct: 193 KNFCLTHE-GYPFFDLKNQEGFVRTLMIRTAS 223
>gi|332879258|ref|ZP_08446955.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Capnocytophaga sp.
oral taxon 329 str. F0087]
gi|357048050|ref|ZP_09109628.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Paraprevotella clara
YIT 11840]
gi|332682678|gb|EGJ55578.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Capnocytophaga sp.
oral taxon 329 str. F0087]
gi|355529115|gb|EHG98569.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Paraprevotella clara
YIT 11840]
Length = 491
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 55/98 (56%), Gaps = 5/98 (5%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF F KRW E + + +N A+G H G FDK+L I++C L + N + A+
Sbjct: 151 KLEFGFSNKRWLTPEEIASGNAYTQNGAVGFHTSGSFDKILPIEQCRLMDDINNRIRNAI 210
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMI 224
+DY + QL +D H+G L+++M+R TG M+
Sbjct: 211 RDYGYEHQLTF--HDQREHAGLLRNMMIRNSNTGELML 246
>gi|255536105|ref|YP_003096476.1| RNA methyltransferase, TrmA family [Flavobacteriaceae bacterium
3519-10]
gi|255342301|gb|ACU08414.1| RNA methyltransferase, TrmA family [Flavobacteriaceae bacterium
3519-10]
Length = 469
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSF RW + + + ALG H PG + K+L++ +C LQ +P+N + AV
Sbjct: 133 KMEFSFSNARWLTQYEISSEENFGNRNALGFHIPGMWSKILDLKECWLQEDPSNYIRLAV 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
Y GL +DV + GFL+ LMLR S
Sbjct: 193 NQYAVAN--GLEFFDVRNQEGFLRTLMLRQNS 222
>gi|374386982|ref|ZP_09644475.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Odoribacter laneus YIT
12061]
gi|373223028|gb|EHP45385.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Odoribacter laneus YIT
12061]
Length = 470
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+F KR+ +E + K A+G H PG FDKV++I+ C LQ P+N + +
Sbjct: 131 KLEFTFSNKRFLTREEIDKDISIDRTPAIGFHVPGLFDKVVDIENCYLQGNPSNEIRNFI 190
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+ Y + LS +D+ + +GFL+ L++RT S
Sbjct: 191 RQYALEND--LSFFDIRNQNGFLRTLIIRTAS 220
>gi|344203582|ref|YP_004788725.1| TrmA family RNA methyltransferase [Muricauda ruestringensis DSM
13258]
gi|343955504|gb|AEM71303.1| RNA methyltransferase, TrmA family [Muricauda ruestringensis DSM
13258]
Length = 470
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSF RW +E + + + ALG H PG +DK+L+I KC LQ +P+N + V
Sbjct: 133 KMEFSFSDSRWLTQEEINSDIEIEDRNALGFHIPGMWDKILDIKKCHLQQDPSNAIRLEV 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+++ + GL+ ++ G L+ LM+RT S
Sbjct: 193 KNFAN--KNGLTFFNPRRQEGLLRTLMIRTSS 222
>gi|149372775|ref|ZP_01891796.1| putative RNA methyltransferase [unidentified eubacterium SCB49]
gi|149354472|gb|EDM43037.1| putative RNA methyltransferase [unidentified eubacterium SCB49]
Length = 469
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 55/94 (58%), Gaps = 6/94 (6%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSF +W E + ALG H PG +DK+L+++KC LQ +P+N A+
Sbjct: 134 KMEFSFSDNKWLTLEQIQSDAIIDNKNALGFHIPGMWDKILDLNKCYLQQDPSN----AI 189
Query: 190 QDY--WRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+D+ + +L + Y+V + +G L+ LM+RT S
Sbjct: 190 RDFVKAKAQELDIPFYNVRNQTGILRTLMIRTSS 223
>gi|154492137|ref|ZP_02031763.1| hypothetical protein PARMER_01769 [Parabacteroides merdae ATCC
43184]
gi|423722255|ref|ZP_17696431.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Parabacteroides merdae
CL09T00C40]
gi|154087362|gb|EDN86407.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Parabacteroides merdae
ATCC 43184]
gi|409242396|gb|EKN35158.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Parabacteroides merdae
CL09T00C40]
Length = 474
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+F K+W +E + A+G H PG FDKVL+I KC LQ++ +N + AV
Sbjct: 133 KLEFTFSNKKWLTEEEVKTEAKFDCMDAVGFHIPGMFDKVLDIHKCWLQNDISNRIRLAV 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
++Y + G +D+ + GF++ LM+RT S
Sbjct: 193 KEYCLTHE-GYPFFDLRNQEGFVRTLMIRTAS 223
>gi|423345399|ref|ZP_17323088.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Parabacteroides merdae
CL03T12C32]
gi|409223185|gb|EKN16122.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Parabacteroides merdae
CL03T12C32]
Length = 474
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 55/92 (59%), Gaps = 1/92 (1%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+F K+W +E + A+G H PG FDKVL+I KC LQ++ +N + AV
Sbjct: 133 KLEFTFSNKKWLTEEEVKTEAKFDCMDAVGFHIPGMFDKVLDIHKCWLQNDISNRIRLAV 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
++Y + G +D+ + GF++ LM+RT S
Sbjct: 193 KEYCLTHE-GYPFFDLRNQEGFVRTLMIRTAS 223
>gi|260063140|ref|YP_003196220.1| RNA methyltransferase, TrmA family protein [Robiginitalea biformata
HTCC2501]
gi|88784709|gb|EAR15879.1| RNA methyltransferase, TrmA family protein [Robiginitalea biformata
HTCC2501]
Length = 509
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 54/98 (55%), Gaps = 5/98 (5%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSF RW + ALGLH PG +DK+L++ +C LQ++P+N + AV
Sbjct: 170 KMEFSFSDNRWLEPGEIASGEPVASRNALGLHIPGMWDKILDLQECHLQADPSNAIRLAV 229
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMI 224
++Y GL+ +D G L+ LMLR +G M+
Sbjct: 230 REYAESH--GLAFFDTRKQEGLLRSLMLRNTASGQVMV 265
>gi|146300255|ref|YP_001194846.1| RNA methyltransferase [Flavobacterium johnsoniae UW101]
gi|146154673|gb|ABQ05527.1| RNA methyltransferase, TrmA family [Flavobacterium johnsoniae
UW101]
Length = 470
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSF RW ++ + D ALG H P +DK+L+I+KC LQ +P+N + +
Sbjct: 134 KMEFSFSNSRWLTEKEIGSTEDLGNRNALGFHIPKMWDKILDIEKCHLQEDPSNAIRNEI 193
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+ + + L ++ HSG L+ LM+RT S
Sbjct: 194 RAFANEHNLAF--FNPREHSGLLRTLMIRTAS 223
>gi|313674919|ref|YP_004052915.1| 23S rRNA m(5)u-1939 methyltransferase [Marivirga tractuosa DSM
4126]
gi|312941617|gb|ADR20807.1| 23S rRNA m(5)U-1939 methyltransferase [Marivirga tractuosa DSM
4126]
Length = 466
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 57/92 (61%), Gaps = 3/92 (3%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+ME++F RW E + + G E+ ALG H P FDK++ I+KC LQ++P+N + +V
Sbjct: 131 KMEYTFSNNRWLTTEEI-ESGKEFESDALGFHIPKRFDKIVQIEKCYLQADPSNAIRNSV 189
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+ +D ++ +++ GFL++L++RT S
Sbjct: 190 DRFAKDNN--ITYFNLIKQVGFLRNLIIRTSS 219
>gi|404405055|ref|ZP_10996639.1| RNA methyltransferase [Alistipes sp. JC136]
Length = 479
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+F +RW +E + GD + A+G H P FDKVL+I KC LQ +P+N +
Sbjct: 143 KLEFTFADRRWLTREEIETAGDIGDAPAVGFHIPSMFDKVLDIRKCWLQPDPSNGIRTEA 202
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+ + + G + ++ SH G ++++++RT S
Sbjct: 203 RRFC--IENGYTFHNARSHEGLMRNMIVRTAS 232
>gi|333377268|ref|ZP_08469003.1| hypothetical protein HMPREF9456_00598 [Dysgonomonas mossii DSM
22836]
gi|332884588|gb|EGK04845.1| hypothetical protein HMPREF9456_00598 [Dysgonomonas mossii DSM
22836]
Length = 469
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 71/145 (48%), Gaps = 11/145 (7%)
Query: 86 CESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAEMEFSFGPKRWFPKES 145
E L YK K V + + LPG I + + ++EF+F K+W E
Sbjct: 93 AEQLKYKQKQV----EDNLTRIGKIELPGIHHILGSEKTQFYRNKLEFTFSNKKWLTLEQ 148
Query: 146 LPKRGDHIENY-ALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYD 204
+ G+ +N ALG H PG FDKVL+IDKC LQ + +N + ++ Y D +D
Sbjct: 149 I-NSGESFDNMNALGFHIPGMFDKVLDIDKCWLQEDISNQIRNFIRQYCYDKNYTF--FD 205
Query: 205 VHSHSGFLKHLMLR---TGSFMICA 226
+ + G +++L++R TG M+
Sbjct: 206 LRNRGGLMRNLIVRTSTTGELMVIV 230
>gi|393788354|ref|ZP_10376484.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides nordii
CL02T12C05]
gi|392656027|gb|EIY49668.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides nordii
CL02T12C05]
Length = 454
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 60/105 (57%), Gaps = 8/105 (7%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+F KRW E + + + + A+G H PG FDKVL I+KC LQ++ +N + AV
Sbjct: 115 KLEFTFSNKRWLTNEEVKQDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQNDISNRIRNAV 174
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS------FMICAPV 228
+DY + S ++ S G L+++++RT S +IC V
Sbjct: 175 RDYAYEH--NYSFINLRSQEGMLRNMIVRTSSTGELMVIIICKIV 217
>gi|305666421|ref|YP_003862708.1| putative RNA methyltransferase [Maribacter sp. HTCC2170]
gi|88708684|gb|EAR00919.1| putative RNA methyltransferase [Maribacter sp. HTCC2170]
Length = 469
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSF RW + + + E ALG H PG +DK+L+I KC LQ++P+N + AV
Sbjct: 133 KMEFSFSDSRWLTLDEIQSDVEIKEKNALGFHIPGMWDKILDIKKCHLQADPSNEIRLAV 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+D+ ++ ++ + G L+ LM+RT S
Sbjct: 193 KDFAIKNEITF--FNPRNQYGMLRTLMIRTAS 222
>gi|295133700|ref|YP_003584376.1| tRNA (uracil-5-)-methyltransferase [Zunongwangia profunda SM-A87]
gi|294981715|gb|ADF52180.1| tRNA (uracil-5-)-methyltransferase [Zunongwangia profunda SM-A87]
Length = 469
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSF RW E + D + ALG H PG +DK+L+I KC LQ +P+N + V
Sbjct: 133 KMEFSFSDSRWLTLEEIQSGKDFEDKNALGFHIPGMWDKILDIKKCHLQEDPSNAIRNFV 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+ + ++ ++ + +G L+ LM+RT S
Sbjct: 193 KIFATQNEIPF--FNTRAQNGLLRTLMIRTSS 222
>gi|298385356|ref|ZP_06994914.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp.
1_1_14]
gi|298261497|gb|EFI04363.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp.
1_1_14]
Length = 472
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 56/92 (60%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+F KRW + + + + + A+G H PG FDKVL I+KC LQ + +N + AV
Sbjct: 133 KLEFTFSNKRWLTNDEVRQDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNRIRNAV 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+DY + G S ++ + G L+++++RT S
Sbjct: 193 RDYAYEH--GYSFINLRTQEGMLRNMIIRTSS 222
>gi|404486106|ref|ZP_11021300.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Barnesiella
intestinihominis YIT 11860]
gi|404337434|gb|EJZ63888.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Barnesiella
intestinihominis YIT 11860]
Length = 461
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
Query: 122 TRKKGSYAEMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEP 181
T+++ ++EFSF K W E L + ALG H PG FDKVL+I KC LQ +
Sbjct: 116 TKQQYYRNKLEFSFSNKSWLTYEQLQTEQEFDCRNALGFHIPGMFDKVLDIKKCWLQDDI 175
Query: 182 ANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+N + +++ Y D +D+ +GF++++++RT S
Sbjct: 176 SNRIRLSIRQYAIDNHYPF--FDLREQTGFMRNIIIRTSS 213
>gi|399032071|ref|ZP_10731740.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Flavobacterium sp.
CF136]
gi|398069599|gb|EJL60945.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Flavobacterium sp.
CF136]
Length = 470
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSF RW ++ + D ALG H P +DK+L+I+KC LQ +P+N + +
Sbjct: 134 KMEFSFSNSRWLTEKEIDSTEDLGNRNALGFHIPKMWDKILDINKCHLQEDPSNAIRNEL 193
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+ + + L ++ HSG L+ LM+RT S
Sbjct: 194 RAFANEHNLAF--FNPREHSGLLRTLMIRTAS 223
>gi|374597316|ref|ZP_09670320.1| 23S rRNA m(5)U-1939 methyltransferase [Gillisia limnaea DSM 15749]
gi|373871955|gb|EHQ03953.1| 23S rRNA m(5)U-1939 methyltransferase [Gillisia limnaea DSM 15749]
Length = 490
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSF RW + + + + ALG H PG +DK+L+I KC LQ++P+N + V
Sbjct: 154 KMEFSFSDSRWLTLDEINSGEEFEDKNALGFHIPGMWDKILDIKKCHLQADPSNDIRNFV 213
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+++ +L ++ +G L+ LM+RT S
Sbjct: 214 KEFANKNELAF--FNTREQTGLLRTLMIRTSS 243
>gi|399025914|ref|ZP_10727889.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Chryseobacterium sp.
CF314]
gi|398077095|gb|EJL68117.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Chryseobacterium sp.
CF314]
Length = 468
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSF RW + + + ALG H PG + K+L++ +C LQ +P+N + AV
Sbjct: 132 KMEFSFSNARWLTQYEISSEENFGSKDALGFHIPGMWSKILDLKECFLQEDPSNAIRLAV 191
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+ + + G +DV + GFL+ LM+R S
Sbjct: 192 KQFGVEN--GFDFFDVRNQEGFLRTLMMRQNS 221
>gi|390946881|ref|YP_006410641.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Alistipes finegoldii
DSM 17242]
gi|390423450|gb|AFL77956.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Alistipes finegoldii
DSM 17242]
Length = 483
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+F +RW +E + D ALG H P FDKVL+IDKC LQ +P+N +
Sbjct: 147 KLEFTFADRRWLTREEVESGTDFDAAPALGFHIPNMFDKVLDIDKCWLQPDPSNDIRTET 206
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+ + + G + ++ H G ++++++RT S
Sbjct: 207 RRFC--IENGYTFHNAREHRGLMRNMIVRTAS 236
>gi|340619096|ref|YP_004737549.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Zobellia
galactanivorans]
gi|339733893|emb|CAZ97270.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Zobellia
galactanivorans]
Length = 478
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSF RW + + + + ALG H PG +DK+L+I KC LQ +P+N +
Sbjct: 142 KMEFSFSDSRWLTLKEIQSDNNFTDKNALGFHIPGMWDKILDIKKCHLQQDPSNAIRLET 201
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+D+ + GL+ ++ + G L+ LM+RT S
Sbjct: 202 RDFA--IKNGLTFFNPRNQHGQLRTLMIRTAS 231
>gi|334365565|ref|ZP_08514518.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Alistipes sp. HGB5]
gi|313158329|gb|EFR57731.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Alistipes sp. HGB5]
Length = 469
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+F +RW +E + D ALG H P FDKVL+IDKC LQ +P+N +
Sbjct: 133 KLEFTFADRRWLTREEVESGTDFDAAPALGFHIPNMFDKVLDIDKCWLQPDPSNDIRTET 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+ + + G + ++ H G ++++++RT S
Sbjct: 193 RRFC--IENGYTFHNAREHRGLMRNMIVRTAS 222
>gi|376317193|emb|CCG00564.1| RNA methyltransferase [uncultured Flavobacteriia bacterium]
Length = 470
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 59/98 (60%), Gaps = 5/98 (5%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSF RW E + ++ + ALG H PG +DK+L+I KC LQ++P+N + V
Sbjct: 133 KMEFSFSDSRWLTPEEIQEKDIIEDRNALGFHIPGMWDKILDIKKCHLQADPSNEMRLFV 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRT---GSFMI 224
+ + G++ ++ +H+G L+ LM+RT G +M+
Sbjct: 193 KRFAIAE--GITFFNPRNHTGELRTLMIRTSSNGEYMV 228
>gi|298481085|ref|ZP_06999279.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. D22]
gi|298272659|gb|EFI14226.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. D22]
Length = 472
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+F KRW E + + + + A+G H PG FDKVL I+KC LQ + +N + AV
Sbjct: 133 KLEFTFSNKRWLTNEEVRQDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNRIRNAV 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+DY + S ++ + G L+++++RT S
Sbjct: 193 RDYAYEHD--YSFINLRTQEGMLRNMIIRTSS 222
>gi|262406440|ref|ZP_06082989.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp.
2_1_22]
gi|294643718|ref|ZP_06721518.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides ovatus SD
CC 2a]
gi|294807326|ref|ZP_06766138.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides
xylanisolvens SD CC 1b]
gi|262355143|gb|EEZ04234.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp.
2_1_22]
gi|292640956|gb|EFF59174.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides ovatus SD
CC 2a]
gi|294445456|gb|EFG14111.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides
xylanisolvens SD CC 1b]
Length = 472
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+F KRW E + + + + A+G H PG FDKVL I+KC LQ + +N + AV
Sbjct: 133 KLEFTFSNKRWLTNEEVRQDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNRIRNAV 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+DY + S ++ + G L+++++RT S
Sbjct: 193 RDYAYEHD--YSFINLRTQEGMLRNMIIRTSS 222
>gi|345509990|ref|ZP_08789568.1| RNA methyltransferase [Bacteroides sp. D1]
gi|229445343|gb|EEO51134.1| RNA methyltransferase [Bacteroides sp. D1]
Length = 462
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+F KRW E + + + + A+G H PG FDKVL I+KC LQ + +N + AV
Sbjct: 123 KLEFTFSNKRWLTNEEVRQDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNRIRNAV 182
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+DY + S ++ + G L+++++RT S
Sbjct: 183 RDYAYEHD--YSFINLRTQEGMLRNMIIRTSS 212
>gi|336405270|ref|ZP_08585950.1| hypothetical protein HMPREF0127_03263 [Bacteroides sp. 1_1_30]
gi|335938082|gb|EGM99973.1| hypothetical protein HMPREF0127_03263 [Bacteroides sp. 1_1_30]
Length = 462
Score = 68.2 bits (165), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+F KRW E + + + + A+G H PG FDKVL I+KC LQ + +N + AV
Sbjct: 123 KLEFTFSNKRWLTNEEVRQDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNRIRNAV 182
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+DY + S ++ + G L+++++RT S
Sbjct: 183 RDYAYEHD--YSFINLRTQEGMLRNMIIRTSS 212
>gi|383111633|ref|ZP_09932442.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. D2]
gi|382949255|gb|EFS33488.2| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. D2]
Length = 462
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+F KRW E + + + + A+G H PG FDKVL I+KC LQ + +N + AV
Sbjct: 123 KLEFTFSNKRWLTNEEVRQDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNRIRNAV 182
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+DY + S ++ + G L+++++RT S
Sbjct: 183 RDYAYEHD--YSFINLRTQEGMLRNMIVRTSS 212
>gi|228473017|ref|ZP_04057774.1| 23S rRNA-methyltransferase [Capnocytophaga gingivalis ATCC 33624]
gi|228275599|gb|EEK14376.1| 23S rRNA-methyltransferase [Capnocytophaga gingivalis ATCC 33624]
Length = 469
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EFSF RW E + + + + LG H G +DKVL+I KC LQ +P+N + +
Sbjct: 133 KIEFSFSETRWLTPEEITSKEEIADRQGLGFHITGAWDKVLDIRKCHLQEDPSNAIRNKI 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGSF 222
++Y G Y+ SHSG+L+ +M+R S
Sbjct: 193 REYALS--YGYPFYNPRSHSGWLRTMMIRISSI 223
>gi|402494619|ref|ZP_10841359.1| RNA methyltransferase [Aquimarina agarilytica ZC1]
Length = 469
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSF RW + + + ALG H PG +DK+L+++KC LQ++P+N + V
Sbjct: 133 KMEFSFSDSRWLSLDEIKSDQQINDRNALGFHIPGMWDKILDLNKCHLQADPSNAIRTKV 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+++ +L ++ + G L+ LM+RT S
Sbjct: 193 KEFATKNELPF--FNARNQQGLLRSLMIRTTS 222
>gi|224024090|ref|ZP_03642456.1| hypothetical protein BACCOPRO_00809 [Bacteroides coprophilus DSM
18228]
gi|224017312|gb|EEF75324.1| hypothetical protein BACCOPRO_00809 [Bacteroides coprophilus DSM
18228]
Length = 504
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++E++F KRW +E + + + + A+G H PG FDKVL I+KC LQ + +N + ++
Sbjct: 160 KLEYTFSNKRWLTEEEVKQDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNRIRNSI 219
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+DY +D+ + G L+++M+RT S
Sbjct: 220 RDYAYAHNYPF--FDLRTQEGMLRNMMVRTSS 249
>gi|124002028|ref|ZP_01686882.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Microscilla marina
ATCC 23134]
gi|123992494|gb|EAY31839.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Microscilla marina
ATCC 23134]
Length = 481
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 57/99 (57%), Gaps = 5/99 (5%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+F +RW KE + + ALG H P FDK+L+ID C LQ +P+N + +
Sbjct: 133 KLEFTFSNRRWMTKEEIATEEKIQDPNALGFHIPKRFDKILDIDHCYLQPDPSNKIRLTL 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMIC 225
+ Y D +L +D ++ GFL+++++R +G M+
Sbjct: 193 KKYAVDNELTF--FDQKNNEGFLRNVVIRNANSGDLMVI 229
>gi|423296153|ref|ZP_17274238.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides ovatus
CL03T12C18]
gi|392670763|gb|EIY64241.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides ovatus
CL03T12C18]
Length = 462
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+F KRW E + + + + A+G H PG FDKVL I+KC LQ + +N + AV
Sbjct: 123 KLEFTFSNKRWLTNEEVRQDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNRIRNAV 182
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+DY + S ++ + G L+++++RT S
Sbjct: 183 RDYAYEHD--YSFINLRTQEGMLRNMIVRTSS 212
>gi|237719530|ref|ZP_04550011.1| RNA methyltransferase [Bacteroides sp. 2_2_4]
gi|229451390|gb|EEO57181.1| RNA methyltransferase [Bacteroides sp. 2_2_4]
Length = 472
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+F KRW E + + + + A+G H PG FDKVL I+KC LQ + +N + AV
Sbjct: 133 KLEFTFSNKRWLTNEEVRQDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNRIRNAV 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+DY + S ++ + G L+++++RT S
Sbjct: 193 RDYAYEHD--YSFINLRTQEGMLRNMIVRTSS 222
>gi|299146119|ref|ZP_07039187.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp.
3_1_23]
gi|298516610|gb|EFI40491.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp.
3_1_23]
Length = 472
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+F KRW E + + + + A+G H PG FDKVL I+KC LQ + +N + AV
Sbjct: 133 KLEFTFSNKRWLTNEEVRQDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNRIRNAV 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+DY + S ++ + G L+++++RT S
Sbjct: 193 RDYAYEHD--YSFINLRTQEGMLRNMIVRTSS 222
>gi|78189981|ref|YP_380319.1| 23S rRNA methyltransferase/RumA [Chlorobium chlorochromatii CaD3]
gi|78172180|gb|ABB29276.1| 23S rRNA m(5)U-1939 methyltransferase [Chlorobium chlorochromatii
CaD3]
Length = 477
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 73/149 (48%), Gaps = 9/149 (6%)
Query: 73 YFKPIRGQELELVCE--SLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAE 130
YF G +L VC L YK K KV+D L D V P + T +
Sbjct: 81 YFGVCGGCKLMHVCNEAQLRYKQK---KVSD-ALKHLGDFVEPPVASVLAGTSPLHYRNK 136
Query: 131 MEFSFGPKRWF-PKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
MEFSF KR+ P+E + +ALG H PG F+KV++ID C L N VL
Sbjct: 137 MEFSFAAKRYLMPEELSLTELSRSKEFALGFHTPGNFEKVIDIDYCYLARNEMNQVLELT 196
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR 218
+ + Q L PY V +H+GFL++L++R
Sbjct: 197 RRFAL--QHALPPYSVKTHTGFLRNLVVR 223
>gi|380695705|ref|ZP_09860564.1| RNA methyltransferase [Bacteroides faecis MAJ27]
Length = 472
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+F KRW + + + + + A+G H PG FDKVL I+KC LQ + +N + AV
Sbjct: 133 KLEFTFSNKRWLTNDEVRQDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNRIRNAV 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+DY + S ++ S G L+++++RT S
Sbjct: 193 RDYAYEHD--YSFINLRSQEGMLRNMIIRTSS 222
>gi|336413706|ref|ZP_08594055.1| hypothetical protein HMPREF1017_01163 [Bacteroides ovatus
3_8_47FAA]
gi|423286366|ref|ZP_17265217.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides ovatus
CL02T12C04]
gi|335934723|gb|EGM96706.1| hypothetical protein HMPREF1017_01163 [Bacteroides ovatus
3_8_47FAA]
gi|392675053|gb|EIY68495.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides ovatus
CL02T12C04]
Length = 462
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+F KRW E + + + + A+G H PG FDKVL I+KC LQ + +N + AV
Sbjct: 123 KLEFTFSNKRWLTNEEVRQDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNRIRNAV 182
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+DY + S ++ + G L+++++RT S
Sbjct: 183 RDYAYEHD--YSFINLRTQEGMLRNMIVRTSS 212
>gi|160889893|ref|ZP_02070896.1| hypothetical protein BACUNI_02324 [Bacteroides uniformis ATCC 8492]
gi|156860885|gb|EDO54316.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides uniformis
ATCC 8492]
Length = 473
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 57/98 (58%), Gaps = 5/98 (5%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++E++F KRW E + + + + A+G H P FDKVL I+KC LQ + +N + AV
Sbjct: 133 KLEYTFSNKRWLTTEEVQQNVVYEQMNAVGFHIPNAFDKVLAIEKCWLQDDISNCIRNAV 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMI 224
+DY Q S ++ +H G L+++++R TG M+
Sbjct: 193 RDYAY--QHNYSFINLRTHEGMLRNMIVRTSTTGELMV 228
>gi|429747831|ref|ZP_19281075.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Capnocytophaga sp.
oral taxon 380 str. F0488]
gi|429162274|gb|EKY04606.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Capnocytophaga sp.
oral taxon 380 str. F0488]
Length = 471
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 54/94 (57%), Gaps = 4/94 (4%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENY-ALGLHAPGFFDKVLNIDKCLLQSEPANLVLAA 188
+MEFSF RW + + K+ D I+N ALG H G +DK+L+IDKC LQ+EP+N +
Sbjct: 132 KMEFSFSDMRWLTPDEI-KKADEIDNRNALGFHIAGAWDKILDIDKCYLQAEPSNAIRFE 190
Query: 189 VQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGSF 222
++ + ++ Y +G L+ +M+R S
Sbjct: 191 IKRFALANEMPF--YSPRQQTGLLRTMMIRISSI 222
>gi|218262095|ref|ZP_03476683.1| hypothetical protein PRABACTJOHN_02355, partial [Parabacteroides
johnsonii DSM 18315]
gi|218223595|gb|EEC96245.1| hypothetical protein PRABACTJOHN_02355 [Parabacteroides johnsonii
DSM 18315]
Length = 475
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+F K+W +E + A+G H PG FDKVL+I KC LQ++ +N + AV
Sbjct: 155 KLEFTFSNKKWLTEEEVKTGAKFDCMNAVGFHIPGMFDKVLDIHKCWLQNDISNRIRLAV 214
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
++Y + G +D+ + G ++ LM+RT S
Sbjct: 215 KEYCLTHE-GYPFFDLRNQEGLVRTLMIRTAS 245
>gi|395800669|ref|ZP_10479941.1| RNA methyltransferase [Flavobacterium sp. F52]
gi|395437077|gb|EJG02999.1| RNA methyltransferase [Flavobacterium sp. F52]
Length = 470
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 54/98 (55%), Gaps = 5/98 (5%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSF RW ++ + D ALG H P +DK+L+I+KC LQ +P+N + +
Sbjct: 134 KMEFSFSNSRWLTEKEIGSTEDLGNRNALGFHIPKMWDKILDINKCHLQEDPSNAIRNEI 193
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMI 224
+ + + L ++ HSG L+ +M+R TG M+
Sbjct: 194 RAFANEHNLAF--FNPREHSGLLRTVMIRTVSTGEIMV 229
>gi|325106371|ref|YP_004276025.1| 23S rRNA m(5)U-1939 methyltransferase [Pedobacter saltans DSM
12145]
gi|324975219|gb|ADY54203.1| 23S rRNA m(5)U-1939 methyltransferase [Pedobacter saltans DSM
12145]
Length = 465
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 57/92 (61%), Gaps = 3/92 (3%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++E++F KRW E + D E ALG H P FDK+L+++ C LQ++P+N + ++
Sbjct: 129 KLEYTFSNKRWLTNEDIASGLDK-EMNALGFHVPLRFDKILDVEHCYLQADPSNDIRNSI 187
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+ + + +S YD+ +H G L++L++RT S
Sbjct: 188 RVFALEND--ISFYDLRAHEGALRNLIIRTSS 217
>gi|423218273|ref|ZP_17204769.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides caccae
CL03T12C61]
gi|392627776|gb|EIY21811.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides caccae
CL03T12C61]
Length = 462
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+F KRW E + + + + A+G H PG FDKVL I+KC LQ + +N + A+
Sbjct: 123 KLEFTFSNKRWLTNEEVRQDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNRIRNAI 182
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+DY + S ++ + G L+++++RT S
Sbjct: 183 RDYAYEHD--YSFINLRTQEGMLRNMIVRTSS 212
>gi|423306367|ref|ZP_17284366.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides uniformis
CL03T00C23]
gi|423309083|ref|ZP_17287073.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides uniformis
CL03T12C37]
gi|392679102|gb|EIY72495.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides uniformis
CL03T00C23]
gi|392685822|gb|EIY79133.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides uniformis
CL03T12C37]
Length = 473
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 57/98 (58%), Gaps = 5/98 (5%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++E++F KRW E + + + + A+G H P FDKVL I+KC LQ + +N + AV
Sbjct: 133 KLEYTFSNKRWLTTEEVQQNVVYEQMNAVGFHIPNAFDKVLAIEKCWLQDDISNRIRNAV 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMI 224
+DY Q S ++ +H G L+++++R TG M+
Sbjct: 193 RDYAY--QHNYSFINLRTHEGMLRNMIVRTSTTGELMV 228
>gi|270294142|ref|ZP_06200344.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. D20]
gi|317478899|ref|ZP_07938047.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp.
4_1_36]
gi|270275609|gb|EFA21469.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. D20]
gi|316904933|gb|EFV26739.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp.
4_1_36]
Length = 473
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 57/98 (58%), Gaps = 5/98 (5%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++E++F KRW E + + + + A+G H P FDKVL I+KC LQ + +N + AV
Sbjct: 133 KLEYTFSNKRWLTTEEVQQNVVYEQMNAVGFHIPNAFDKVLAIEKCWLQDDISNRIRNAV 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMI 224
+DY Q S ++ +H G L+++++R TG M+
Sbjct: 193 RDYAY--QHNYSFINLRTHEGMLRNMIVRTSTTGELMV 228
>gi|423300200|ref|ZP_17278225.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides finegoldii
CL09T03C10]
gi|408474009|gb|EKJ92531.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides finegoldii
CL09T03C10]
Length = 462
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+F KRW E + + + + A+G H PG FDKVL I+KC LQ + +N + A+
Sbjct: 123 KLEFTFSNKRWLTSEEVRQDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNRIRNAI 182
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+DY + S ++ + G L+++++RT S
Sbjct: 183 RDYAYEHD--YSFINLRTQEGMLRNMIVRTSS 212
>gi|332664986|ref|YP_004447774.1| TrmA family RNA methyltransferase [Haliscomenobacter hydrossis DSM
1100]
gi|332333800|gb|AEE50901.1| RNA methyltransferase, TrmA family [Haliscomenobacter hydrossis DSM
1100]
Length = 470
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/97 (41%), Positives = 53/97 (54%), Gaps = 6/97 (6%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEF+F K+W E + + + LG H G FDKV++I C LQ +P+N V V
Sbjct: 133 KMEFAFSCKQWLTHEEINSEKSNAAD-VLGFHPAGGFDKVIDIQHCWLQPDPSNEVRNTV 191
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFM 223
+ GLS YDV H GFL++LMLR TG M
Sbjct: 192 RTI--AIAQGLSFYDVKKHEGFLRNLMLRITTTGETM 226
>gi|153806599|ref|ZP_01959267.1| hypothetical protein BACCAC_00869 [Bacteroides caccae ATCC 43185]
gi|149131276|gb|EDM22482.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides caccae
ATCC 43185]
Length = 456
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+F KRW E + + + + A+G H PG FDKVL I+KC LQ + +N + A+
Sbjct: 117 KLEFTFSNKRWLTNEEVRQDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNRIRNAI 176
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+DY + S ++ + G L+++++RT S
Sbjct: 177 RDYAYEHD--YSFINLRTQEGMLRNMIVRTSS 206
>gi|268318102|ref|YP_003291821.1| TrmA family RNA methyltransferase [Rhodothermus marinus DSM 4252]
gi|262335636|gb|ACY49433.1| RNA methyltransferase, TrmA family [Rhodothermus marinus DSM 4252]
Length = 466
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 56/99 (56%), Gaps = 2/99 (2%)
Query: 123 RKKGSYAEMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPA 182
R G +MEFSF RW E + ++A+GLH PG F KV+++++C L
Sbjct: 122 RLYGYRNKMEFSFSADRWLTPEEIASGRPLDRHFAVGLHVPGNFYKVIDLEECHLPEPIT 181
Query: 183 NLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+L ++ +++ G P+D+ H G+L+HL++RTG+
Sbjct: 182 VRLLNELRAFFKAK--GWEPWDIRRHEGYLRHLVIRTGT 218
Score = 40.4 bits (93), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 78 RGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAE 130
+G ELEL+ E A +GK + +V G+V+ + +PG++ RV ++K +YAE
Sbjct: 4 KGAELELIVEKFADRGKSLTRV--DGYVLFVEGGVPGDRARVRVVKRKKNYAE 54
>gi|29346053|ref|NP_809556.1| RNA methyltransferase [Bacteroides thetaiotaomicron VPI-5482]
gi|50401554|sp|Q8AA22.1|Y643_BACTN RecName: Full=Uncharacterized RNA methyltransferase BT_0643
gi|29337947|gb|AAO75750.1| RNA methyltransferase [Bacteroides thetaiotaomicron VPI-5482]
Length = 454
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+F KRW + + + + + A+G H PG FDKVL I+KC LQ + +N + AV
Sbjct: 115 KLEFTFSNKRWLTNDEVRQDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNRIRNAV 174
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+DY + S ++ + G L++L++RT S
Sbjct: 175 RDYAYEHD--YSFINLRTQEGMLRNLIIRTSS 204
>gi|85816689|gb|EAQ37875.1| RNA methyltransferase, TrmA family [Dokdonia donghaensis MED134]
Length = 471
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 56/99 (56%), Gaps = 7/99 (7%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENY-ALGLHAPGFFDKVLNIDKCLLQSEPANLVLAA 188
+MEF F +W E + K G+ IE+ ALG H G +DK+L+I+KC LQ +P+N +
Sbjct: 134 KMEFGFSDSKWLTLEQI-KSGEMIEDRNALGFHIAGMWDKILDIEKCHLQRDPSNAIRNG 192
Query: 189 VQDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMI 224
++++ + Y+ + G L+ LM+R TG M+
Sbjct: 193 IKEFATANDMAF--YNARNQEGLLRTLMIRTSTTGELMV 229
>gi|255691623|ref|ZP_05415298.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides finegoldii
DSM 17565]
gi|260622692|gb|EEX45563.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides finegoldii
DSM 17565]
Length = 472
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+F KRW E + + + + A+G H PG FDKVL I+KC LQ + +N + A+
Sbjct: 133 KLEFTFSNKRWLTSEEVRQDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNRIRNAI 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+DY + S ++ + G L+++++RT S
Sbjct: 193 RDYAYEHD--YSFINLRTQEGMLRNMIVRTSS 222
>gi|423343741|ref|ZP_17321454.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Parabacteroides
johnsonii CL02T12C29]
gi|409214763|gb|EKN07772.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Parabacteroides
johnsonii CL02T12C29]
Length = 472
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 54/92 (58%), Gaps = 1/92 (1%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+F K+W +E + A+G H PG FDKVL+I KC LQ++ +N + AV
Sbjct: 133 KLEFTFSNKKWLTEEEVKTGAKFDCMNAVGFHIPGMFDKVLDIHKCWLQNDISNRIRLAV 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
++Y + G +D+ + G ++ LM+RT S
Sbjct: 193 KEYCLTHE-GYPFFDLRNQEGLVRTLMIRTAS 223
>gi|408675586|ref|YP_006875334.1| RNA methyltransferase, TrmA family [Emticicia oligotrophica DSM
17448]
gi|387857210|gb|AFK05307.1| RNA methyltransferase, TrmA family [Emticicia oligotrophica DSM
17448]
Length = 468
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 59/98 (60%), Gaps = 6/98 (6%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++E++F RWF ++ + + ++ ALG H P F+KVL I+KC Q +P+N + ++
Sbjct: 133 KLEYTFSNSRWFTRDEINTE-ESMDKNALGFHVPKRFEKVLPIEKCFHQIDPSNAIRLSL 191
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMI 224
+D+ Q + YD +H GFL+++M+R TG M+
Sbjct: 192 RDFAN--QQKYTYYDHIAHEGFLRNVMIRTSTTGDLMV 227
>gi|336173874|ref|YP_004581012.1| TrmA family RNA methyltransferase [Lacinutrix sp. 5H-3-7-4]
gi|334728446|gb|AEH02584.1| RNA methyltransferase, TrmA family [Lacinutrix sp. 5H-3-7-4]
Length = 470
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 55/98 (56%), Gaps = 5/98 (5%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSF RW E + D + ALG H PG +DK+L+++ C LQ++P+N + ++
Sbjct: 134 KMEFSFSDSRWLTLEEIQSDKDLGDRNALGFHIPGMWDKILDLNTCHLQADPSNAIRNSI 193
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMI 224
+ + L ++ + +G L+ LM+R TG M+
Sbjct: 194 KAFAVKNDLEF--FNTRNQTGLLRTLMIRTSTTGDIMV 229
>gi|423284063|ref|ZP_17262947.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides fragilis
HMW 615]
gi|404580609|gb|EKA85318.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides fragilis
HMW 615]
Length = 472
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+F KRW E + + + + A+G H PG FDKVL I+KC LQ + +N + +
Sbjct: 133 KLEFTFSNKRWLTAEEVKQDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNRIRNTI 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+DY + S ++ S G L+++++RT S
Sbjct: 193 RDYAYEH--NYSFINLRSQEGMLRNMIVRTSS 222
>gi|371777777|ref|ZP_09484099.1| RNA methyltransferase [Anaerophaga sp. HS1]
Length = 469
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+F KRW +E + + LG H PG FDKV+NI++C LQ +P+N + A+
Sbjct: 133 KLEFTFSNKRWLTQEEMDSGEVINDKNGLGFHIPGMFDKVINIEECHLQPQPSNAIRLAI 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+D+ +D+ + G L+ L++RT +
Sbjct: 193 RDFAIGNNWPF--FDLKAQEGLLRTLIIRTST 222
>gi|336410158|ref|ZP_08590639.1| hypothetical protein HMPREF1018_02656 [Bacteroides sp. 2_1_56FAA]
gi|335945620|gb|EGN07430.1| hypothetical protein HMPREF1018_02656 [Bacteroides sp. 2_1_56FAA]
Length = 472
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+F KRW E + + + + A+G H PG FDKVL I+KC LQ + +N + +
Sbjct: 133 KLEFTFSNKRWLTAEEVKQDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNRIRNTI 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+DY + S ++ S G L+++++RT S
Sbjct: 193 RDYAYEH--NYSFINLRSQEGMLRNMIVRTSS 222
>gi|423213822|ref|ZP_17200351.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides
xylanisolvens CL03T12C04]
gi|392693479|gb|EIY86711.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides
xylanisolvens CL03T12C04]
Length = 462
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+F KRW E + + + + A+G H PG FDKVL I+KC LQ +N + AV
Sbjct: 123 KLEFTFSNKRWLTNEEVRQDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDNISNHIRNAV 182
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+DY + S ++ + G L+++++RT S
Sbjct: 183 RDYAYEHD--YSFINLRTQEGMLRNMIIRTSS 212
>gi|53713830|ref|YP_099822.1| RNA methyltransferase [Bacteroides fragilis YCH46]
gi|60682048|ref|YP_212192.1| RNA methyltransferase [Bacteroides fragilis NCTC 9343]
gi|265764175|ref|ZP_06092743.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp.
2_1_16]
gi|383118758|ref|ZP_09939498.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. 3_2_5]
gi|423250343|ref|ZP_17231359.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides fragilis
CL03T00C08]
gi|423255844|ref|ZP_17236773.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides fragilis
CL03T12C07]
gi|423256983|ref|ZP_17237906.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides fragilis
CL07T00C01]
gi|423266051|ref|ZP_17245054.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides fragilis
CL07T12C05]
gi|423271713|ref|ZP_17250683.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides fragilis
CL05T00C42]
gi|423276504|ref|ZP_17255445.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides fragilis
CL05T12C13]
gi|52216695|dbj|BAD49288.1| RNA methyltransferase [Bacteroides fragilis YCH46]
gi|60493482|emb|CAH08268.1| putative RNA methyltransferase [Bacteroides fragilis NCTC 9343]
gi|251946079|gb|EES86486.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. 3_2_5]
gi|263256783|gb|EEZ28129.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp.
2_1_16]
gi|387778459|gb|EIK40554.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides fragilis
CL07T00C01]
gi|392649926|gb|EIY43598.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides fragilis
CL03T12C07]
gi|392652652|gb|EIY46310.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides fragilis
CL03T00C08]
gi|392696569|gb|EIY89761.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides fragilis
CL05T00C42]
gi|392696816|gb|EIY90004.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides fragilis
CL05T12C13]
gi|392701759|gb|EIY94913.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides fragilis
CL07T12C05]
Length = 472
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+F KRW E + + + + A+G H PG FDKVL I+KC LQ + +N + +
Sbjct: 133 KLEFTFSNKRWLTAEEVKQDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNRIRNTI 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+DY + S ++ S G L+++++RT S
Sbjct: 193 RDYAYEH--NYSFINLRSQEGMLRNMIVRTSS 222
>gi|293373836|ref|ZP_06620180.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides ovatus SD
CMC 3f]
gi|292631235|gb|EFF49869.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides ovatus SD
CMC 3f]
Length = 462
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+F KRW E + + + + A+G H PG FDKVL I+KC LQ +N + AV
Sbjct: 123 KLEFTFSNKRWLTNEEVRQDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDNISNHIRNAV 182
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+DY + S ++ + G L+++++RT S
Sbjct: 183 RDYAYEHD--YSFINLRTQEGMLRNMIIRTSS 212
>gi|313147266|ref|ZP_07809459.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
gi|313136033|gb|EFR53393.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
Length = 463
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+F KRW E + + + + A+G H PG FDKVL I+KC LQ + +N + +
Sbjct: 124 KLEFTFSNKRWLTAEEVKQDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNRIRNTI 183
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+DY + S ++ S G L+++++RT S
Sbjct: 184 RDYAYEH--NYSFINLRSQEGMLRNMIVRTSS 213
>gi|375358840|ref|YP_005111612.1| putative RNA methyltransferase [Bacteroides fragilis 638R]
gi|301163521|emb|CBW23072.1| putative RNA methyltransferase [Bacteroides fragilis 638R]
Length = 472
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+F KRW E + + + + A+G H PG FDKVL I+KC LQ + +N + +
Sbjct: 133 KLEFTFSNKRWLTAEEVKQDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNRIRNTI 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+DY + S ++ S G L+++++RT S
Sbjct: 193 RDYAYEH--NYSFINLRSQEGMLRNMIVRTSS 222
>gi|256820983|ref|YP_003142262.1| TrmA family RNA methyltransferase [Capnocytophaga ochracea DSM
7271]
gi|256582566|gb|ACU93701.1| RNA methyltransferase, TrmA family [Capnocytophaga ochracea DSM
7271]
Length = 471
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 54/94 (57%), Gaps = 4/94 (4%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENY-ALGLHAPGFFDKVLNIDKCLLQSEPANLVLAA 188
+MEFSF RW + + K+ D I+N ALG H G +DK+L+IDKC LQ++P+N +
Sbjct: 132 KMEFSFSDMRWLTPDEI-KKADEIDNRNALGFHIAGAWDKILDIDKCYLQADPSNAIRLE 190
Query: 189 VQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGSF 222
V+ + ++ Y +G L+ +M+R S
Sbjct: 191 VKRFALANEMPF--YSPRQQTGLLRTMMIRISSI 222
>gi|423277588|ref|ZP_17256502.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides fragilis
HMW 610]
gi|424663727|ref|ZP_18100764.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides fragilis
HMW 616]
gi|404577417|gb|EKA82155.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides fragilis
HMW 616]
gi|404587337|gb|EKA91887.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides fragilis
HMW 610]
Length = 472
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+F KRW E + + + + A+G H PG FDKVL I+KC LQ + +N + +
Sbjct: 133 KLEFTFSNKRWLTAEEVKQDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNRIRNTI 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+DY + S ++ S G L+++++RT S
Sbjct: 193 RDYAYEH--NYSFINLRSQEGMLRNMIVRTSS 222
>gi|374375460|ref|ZP_09633118.1| RNA methyltransferase, TrmA family [Niabella soli DSM 19437]
gi|373232300|gb|EHP52095.1| RNA methyltransferase, TrmA family [Niabella soli DSM 19437]
Length = 502
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 60/110 (54%), Gaps = 12/110 (10%)
Query: 125 KGSYAEMEFSFGPKRWFPKESLPKRGDHIEN-YALG------LHAPGFFDKVLNIDKCLL 177
KG ++E++FG + + PKE + + N Y G HA GF+DK++++ C L
Sbjct: 144 KGYRNKIEYTFGTELFLPKEQFNQLKEQGVNPYEFGRQPVAGFHAKGFWDKIVDLQTCYL 203
Query: 178 QSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMI 224
Q EP N + A++D+ + S YD+ H+GFL+ L LR TG M+
Sbjct: 204 QQEPTNAIRLAIKDFAKVHD--YSFYDLRQHTGFLRTLQLRLCETGELMV 251
>gi|340621387|ref|YP_004739838.1| RNA methyltransferase [Capnocytophaga canimorsus Cc5]
gi|339901652|gb|AEK22731.1| Uncharacterized RNA methyltransferase [Capnocytophaga canimorsus
Cc5]
Length = 469
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 55/93 (59%), Gaps = 4/93 (4%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENY-ALGLHAPGFFDKVLNIDKCLLQSEPANLVLAA 188
+MEFSF RW E + K + I+N LG H G +DK+L++ KC LQ++P+N + A
Sbjct: 133 KMEFSFSDTRWLTPEEI-KDSESIDNRNGLGFHISGAWDKILDVKKCHLQADPSNAIRLA 191
Query: 189 VQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
V+ + ++ Y + SGFL+ +M+RT S
Sbjct: 192 VKQFALKHEMPF--YSPRNQSGFLRSMMIRTAS 222
>gi|365960497|ref|YP_004942064.1| RNA methyltransferase [Flavobacterium columnare ATCC 49512]
gi|365737178|gb|AEW86271.1| RNA methyltransferase [Flavobacterium columnare ATCC 49512]
Length = 470
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 55/93 (59%), Gaps = 4/93 (4%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENY-ALGLHAPGFFDKVLNIDKCLLQSEPANLVLAA 188
+MEF F RW E + G+ ++N A+G H P +DK+L+I+KC LQ +P+N +
Sbjct: 134 KMEFGFSSSRWMTPEEI-NSGEELDNKNAVGFHIPKMWDKILDINKCHLQQDPSNDIRNE 192
Query: 189 VQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
++ + + LS ++ HSG L+ LM+RT S
Sbjct: 193 IRHFANEN--NLSFFNPREHSGLLRTLMIRTAS 223
>gi|338214321|ref|YP_004658382.1| TrmA family RNA methyltransferase [Runella slithyformis DSM 19594]
gi|336308148|gb|AEI51250.1| RNA methyltransferase, TrmA family [Runella slithyformis DSM 19594]
Length = 523
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 55/92 (59%), Gaps = 3/92 (3%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++E++F RWF E + G+ +E ALG H P FD++L+I+KC LQ +P+N + +
Sbjct: 188 KLEYTFSNLRWFTNEEIAMGGE-LERNALGFHIPKRFDRILDIEKCFLQPDPSNDIRNGL 246
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+ + G YD + GF+++L+LRT +
Sbjct: 247 RTFALAK--GFRFYDQKHNEGFVRNLILRTAN 276
>gi|392966074|ref|ZP_10331493.1| RNA methyltransferase, TrmA family [Fibrisoma limi BUZ 3]
gi|387845138|emb|CCH53539.1| RNA methyltransferase, TrmA family [Fibrisoma limi BUZ 3]
Length = 480
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 53/92 (57%), Gaps = 3/92 (3%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+ RW + + I+ A+G H PG FDKVL I C LQ +P+N + AV
Sbjct: 140 KLEFTCAEGRWMTTTEV-HTDERIDPRAVGFHVPGRFDKVLPIRHCYLQPDPSNAIRLAV 198
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
DY + LS Y++ H+G+L+ L++RT S
Sbjct: 199 ADYAM--RHNLSMYNLKVHTGYLRTLIIRTAS 228
>gi|406883781|gb|EKD31298.1| hypothetical protein ACD_77C00346G0005 [uncultured bacterium]
Length = 467
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++E++F KRW + + + LG H G+FDKVL+I+KC LQ EP+N + +
Sbjct: 131 KLEYTFSRKRWIESKDEMQMLSEKDLLGLGFHVTGYFDKVLDIEKCYLQDEPSNSIRLFI 190
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+D+ +D+ SGFL+++++RT +
Sbjct: 191 KDFAVKNDYHF--FDLREQSGFLRNIVIRTST 220
>gi|357061666|ref|ZP_09122410.1| hypothetical protein HMPREF9332_01968 [Alloprevotella rava F0323]
gi|355373531|gb|EHG20848.1| hypothetical protein HMPREF9332_01968 [Alloprevotella rava F0323]
Length = 472
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 70/138 (50%), Gaps = 12/138 (8%)
Query: 87 ESLAYKGKGVCKV-ADTGFVVLCDRV-LPGEKFIGRVTRKKGSYAEMEFSFGPKRWFPKE 144
E L YK + V V G V L D + G K I + K +EF F K+W KE
Sbjct: 94 EQLTYKQQQVTDVLTRIGKVELPDISPILGSKHIKQYRNK------LEFGFSNKKWLTKE 147
Query: 145 SLPKRGDHIENY-ALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPY 203
+ G+ +N A+G H PG FDK+L+ID+C L + N + ++ Y D L+ +
Sbjct: 148 QISS-GETFDNMNAVGFHIPGAFDKILDIDECWLMEDINNRLRNGIRQYAFDN--ALTFF 204
Query: 204 DVHSHSGFLKHLMLRTGS 221
D+ G L+++M+RT +
Sbjct: 205 DLRKQEGLLRNMMIRTSA 222
>gi|383122303|ref|ZP_09942997.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. 1_1_6]
gi|251842610|gb|EES70690.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. 1_1_6]
Length = 472
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+F KRW + + + + + A+G H PG FDKVL I+KC LQ + +N + AV
Sbjct: 133 KLEFTFSNKRWLTNDEVRQDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNRIRNAV 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+DY + S ++ + G L+++++RT S
Sbjct: 193 RDYAYEHD--YSFINLRTQEGMLRNMIIRTSS 222
>gi|329964803|ref|ZP_08301826.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides fluxus YIT
12057]
gi|328524654|gb|EGF51717.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides fluxus YIT
12057]
Length = 511
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 57/98 (58%), Gaps = 5/98 (5%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++E++F KRW E + + + + A+G H P FDKVL I+KC LQ + +N + AV
Sbjct: 169 KLEYTFSNKRWLTSEEVQQNVVYEQMNAVGFHIPNAFDKVLAIEKCWLQDDISNRIRNAV 228
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMI 224
+DY + S ++ +H G L+++++R TG M+
Sbjct: 229 RDYAYEH--NYSFINLRTHEGMLRNMIVRTSTTGELMV 264
>gi|256419908|ref|YP_003120561.1| TrmA family RNA methyltransferase [Chitinophaga pinensis DSM 2588]
gi|256034816|gb|ACU58360.1| RNA methyltransferase, TrmA family [Chitinophaga pinensis DSM 2588]
Length = 472
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 58/100 (58%), Gaps = 7/100 (7%)
Query: 130 EMEFSFGPKRWFPKESLP--KRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLA 187
++EF+F K + P + L + G+ ALG H P FDKVL+I+ C LQ+EP N +
Sbjct: 131 KLEFTFSNKAYLPADELELDEDGNIPRKNALGFHVPKLFDKVLDINTCYLQAEPVNAIRN 190
Query: 188 AVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMI 224
++ Y + LS YD+ + G+L++L++R TG M+
Sbjct: 191 TIRAYALEHN--LSFYDIRAKEGWLRNLVIRICTTGEVMV 228
>gi|393779338|ref|ZP_10367583.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Capnocytophaga sp.
oral taxon 412 str. F0487]
gi|392610612|gb|EIW93389.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Capnocytophaga sp.
oral taxon 412 str. F0487]
Length = 471
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 4/94 (4%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENY-ALGLHAPGFFDKVLNIDKCLLQSEPANLVLAA 188
+MEFSF RW + + K+ D I+N ALG H G +DK+L+IDKC LQ++P+N +
Sbjct: 132 KMEFSFSDMRWLTPDEI-KKADEIDNRNALGFHIAGAWDKILDIDKCYLQADPSNAIRLE 190
Query: 189 VQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGSF 222
++ + ++ Y +G L+ +M+R S
Sbjct: 191 IKRFALANEMPF--YSPRQQTGLLRTMMIRISSI 222
>gi|390444000|ref|ZP_10231784.1| TrmA family RNA methyltransferase [Nitritalea halalkaliphila LW7]
gi|389665439|gb|EIM76906.1| TrmA family RNA methyltransferase [Nitritalea halalkaliphila LW7]
Length = 399
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 54/98 (55%), Gaps = 6/98 (6%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+++F+F RW KE + + G+ E ALG H PG FDK++ I C LQ +N + A+
Sbjct: 109 KLDFTFSNNRWLTKEEI-QSGEEFERNALGFHVPGMFDKIVPISHCYLQGGQSNAIRNAL 167
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMI 224
Y GLS YD+ G L++L++R TG M+
Sbjct: 168 --YAFALAEGLSFYDIREQVGLLRNLIIRSTTTGEEMV 203
>gi|429755301|ref|ZP_19287966.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Capnocytophaga sp.
oral taxon 324 str. F0483]
gi|429175188|gb|EKY16640.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Capnocytophaga sp.
oral taxon 324 str. F0483]
Length = 471
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 4/94 (4%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENY-ALGLHAPGFFDKVLNIDKCLLQSEPANLVLAA 188
+MEFSF RW + + K+ D I+N ALG H G +DK+L+IDKC LQ++P+N +
Sbjct: 132 KMEFSFSDMRWLTPDEI-KKADEIDNRNALGFHIAGAWDKILDIDKCYLQADPSNAIRLE 190
Query: 189 VQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGSF 222
++ + ++ Y +G L+ +M+R S
Sbjct: 191 IKRFALANEMPF--YSPRQQTGLLRTMMIRISSI 222
>gi|315224184|ref|ZP_07866024.1| 23S rRNA (uracil-5-)-methyltransferase [Capnocytophaga ochracea
F0287]
gi|420158366|ref|ZP_14665184.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Capnocytophaga
ochracea str. Holt 25]
gi|314945917|gb|EFS97926.1| 23S rRNA (uracil-5-)-methyltransferase [Capnocytophaga ochracea
F0287]
gi|394763715|gb|EJF45785.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Capnocytophaga
ochracea str. Holt 25]
Length = 471
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 4/94 (4%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENY-ALGLHAPGFFDKVLNIDKCLLQSEPANLVLAA 188
+MEFSF RW + + K+ D I+N ALG H G +DK+L+IDKC LQ++P+N +
Sbjct: 132 KMEFSFSDMRWLTPDEI-KKADEIDNRNALGFHIAGAWDKILDIDKCYLQADPSNAIRLE 190
Query: 189 VQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGSF 222
++ + ++ Y +G L+ +M+R S
Sbjct: 191 IKRFALANEMPF--YSPRQQTGLLRTMMIRISSI 222
>gi|330997901|ref|ZP_08321735.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Paraprevotella
xylaniphila YIT 11841]
gi|329569505|gb|EGG51275.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Paraprevotella
xylaniphila YIT 11841]
Length = 491
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 55/98 (56%), Gaps = 5/98 (5%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF F KRW E + + +N A+G H G FDK+L I++C L + N + A+
Sbjct: 151 KLEFGFSNKRWLTPEEIASGNAYPQNGAVGFHTCGSFDKILPIEQCRLMDDINNRIRNAI 210
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMI 224
+DY + +L +D H+G L+++M+R TG M+
Sbjct: 211 RDYGYEHRLTF--HDQREHAGLLRNMMIRNSNTGELML 246
>gi|332292761|ref|YP_004431370.1| RNA methyltransferase, TrmA family [Krokinobacter sp. 4H-3-7-5]
gi|332170847|gb|AEE20102.1| RNA methyltransferase, TrmA family [Krokinobacter sp. 4H-3-7-5]
Length = 470
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 4/93 (4%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENY-ALGLHAPGFFDKVLNIDKCLLQSEPANLVLAA 188
+MEF F +W E + K + IE+ ALG H G +DK+L+IDKC LQ +P+N +
Sbjct: 134 KMEFGFSDSKWLTLEQI-KSDEVIEDRNALGFHIAGMWDKILDIDKCHLQRDPSNAIRNG 192
Query: 189 VQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
++++ + Y+ + G L+ LM+RT S
Sbjct: 193 IKEFATANNMAF--YNARNQDGLLRTLMIRTSS 223
>gi|363580950|ref|ZP_09313760.1| RNA methyltransferase [Flavobacteriaceae bacterium HQM9]
Length = 469
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSF RW + + + ALG H PG +DK+L+++KC LQ++P+N + V
Sbjct: 133 KMEFSFSDSRWLSLDEIKSDQPIEDRNALGFHIPGMWDKILDLNKCHLQADPSNSIRTKV 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+ + +L Y+ G L+ LM+RT S
Sbjct: 193 KTFATKNKLPF--YNARRQEGLLRSLMIRTTS 222
>gi|150007675|ref|YP_001302418.1| RNA methyltransferase [Parabacteroides distasonis ATCC 8503]
gi|255013620|ref|ZP_05285746.1| RNA methyltransferase [Bacteroides sp. 2_1_7]
gi|262381816|ref|ZP_06074954.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp.
2_1_33B]
gi|298375621|ref|ZP_06985578.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp.
3_1_19]
gi|301310290|ref|ZP_07216229.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. 20_3]
gi|410103523|ref|ZP_11298444.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Parabacteroides sp.
D25]
gi|423331831|ref|ZP_17309615.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Parabacteroides
distasonis CL03T12C09]
gi|423336531|ref|ZP_17314278.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Parabacteroides
distasonis CL09T03C24]
gi|149936099|gb|ABR42796.1| RNA methyltransferase [Parabacteroides distasonis ATCC 8503]
gi|262296993|gb|EEY84923.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp.
2_1_33B]
gi|298268121|gb|EFI09777.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp.
3_1_19]
gi|300831864|gb|EFK62495.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides sp. 20_3]
gi|409229672|gb|EKN22544.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Parabacteroides
distasonis CL03T12C09]
gi|409236252|gb|EKN29059.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Parabacteroides sp.
D25]
gi|409241006|gb|EKN33780.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Parabacteroides
distasonis CL09T03C24]
Length = 470
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 52/92 (56%), Gaps = 1/92 (1%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+F K+W +E + +G H PG FDKVL+I KC LQ + +N + V
Sbjct: 133 KLEFTFSNKKWLTEEEIQSGASFDCMNGVGFHIPGMFDKVLDIHKCWLQDDISNKIRLCV 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
++Y + G +D+ + GF++ LM+RT S
Sbjct: 193 KEYCLSHE-GYPFFDLRNQEGFVRTLMIRTAS 223
>gi|193213715|ref|YP_001999668.1| RNA methyltransferase, TrmA family [Chlorobaculum parvum NCIB 8327]
gi|193087192|gb|ACF12468.1| RNA methyltransferase, TrmA family [Chlorobaculum parvum NCIB 8327]
Length = 479
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 55/92 (59%), Gaps = 7/92 (7%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHI---ENYALGLHAPGFFDKVLNIDKCLLQSEPANLVL 186
++EFS R+ + + D + + +ALG HAPG F+KVL++D C L E N VL
Sbjct: 137 KVEFSCSNMRYLLQSEID--SDELSKPKTFALGFHAPGNFEKVLDLDTCYLAKECMNRVL 194
Query: 187 AAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR 218
V+D+ + GL+PY +H G+L++LMLR
Sbjct: 195 NVVRDFAL--ERGLAPYAAKAHEGYLRNLMLR 224
>gi|160884289|ref|ZP_02065292.1| hypothetical protein BACOVA_02267 [Bacteroides ovatus ATCC 8483]
gi|156110028|gb|EDO11773.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides ovatus
ATCC 8483]
Length = 472
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+F KRW E + + + + A+G H PG FDKVL I+KC LQ + +N + AV
Sbjct: 133 KLEFTFSNKRWLTNEEVHQDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNRIRNAV 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+DY S ++ + G L+++++RT S
Sbjct: 193 RDYAYAHD--YSFINLRTQEGMLRNMIVRTSS 222
>gi|345304392|ref|YP_004826294.1| RNA methyltransferase, TrmA family [Rhodothermus marinus
SG0.5JP17-172]
gi|345113625|gb|AEN74457.1| RNA methyltransferase, TrmA family [Rhodothermus marinus
SG0.5JP17-172]
Length = 466
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 56/99 (56%), Gaps = 2/99 (2%)
Query: 123 RKKGSYAEMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPA 182
R G +MEFSF RW + + ++A+GLH PG F KV+++++C L
Sbjct: 122 RLYGYRNKMEFSFSADRWLTPDEIASGRPLDRHFAVGLHVPGNFYKVIDLEECHLPEPIT 181
Query: 183 NLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+L ++ +++ G P+D+ H G+L+HL++RTG+
Sbjct: 182 VRLLNELRAFFKAK--GWEPWDIRRHEGYLRHLVIRTGT 218
Score = 40.0 bits (92), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 78 RGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAE 130
+G ELEL+ E A +GK + +V G+V+ + +PG++ R+ ++K +YAE
Sbjct: 4 KGAELELIVEKFADRGKSLTRV--DGYVLFVEGGVPGDRARVRIVKRKKNYAE 54
>gi|399927088|ref|ZP_10784446.1| RNA methyltransferase [Myroides injenensis M09-0166]
Length = 470
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSF RW E + + + ALG H P +DK+L+I KC LQ +P+N + +
Sbjct: 134 KMEFSFSNARWLTPEEVASGEEMGKENALGFHIPKMWDKILDIKKCHLQQDPSNDIRNEI 193
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+ + + GLS ++ G L+ LM+RT S
Sbjct: 194 RRFANEN--GLSFFNPREQEGLLRTLMIRTAS 223
>gi|372223713|ref|ZP_09502134.1| RNA methyltransferase [Mesoflavibacter zeaxanthinifaciens S86]
Length = 469
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 55/94 (58%), Gaps = 4/94 (4%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENY-ALGLHAPGFFDKVLNIDKCLLQSEPANLVLAA 188
+MEFSF RW + + K IEN ALG H PG +DK+L+I+KC LQ +P+N +
Sbjct: 133 KMEFSFSDSRWLSLDEI-KSDKEIENRNALGFHIPGMWDKILDINKCYLQPDPSNAIRLE 191
Query: 189 VQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGSF 222
+ + ++ L ++ + +G L+ LM+RT +
Sbjct: 192 AKKFAQEHDLEF--FNPRNQTGLLRTLMIRTSTL 223
>gi|319954120|ref|YP_004165387.1| 23S rRNA m(5)u-1939 methyltransferase [Cellulophaga algicola DSM
14237]
gi|319422780|gb|ADV49889.1| 23S rRNA m(5)U-1939 methyltransferase [Cellulophaga algicola DSM
14237]
Length = 472
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSF RW + + + + ALG H PG +DK+L+I+KC LQ +P+N +
Sbjct: 135 KMEFSFSDSRWLSLDEIKSDEEIKDRNALGFHIPGMWDKILDIEKCHLQEDPSNAIRLET 194
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+D+ + +S ++ + G L+ +M+RT S
Sbjct: 195 KDFA--LKNDMSFFNPRNQHGLLRTMMIRTTS 224
>gi|420150028|ref|ZP_14657190.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Capnocytophaga sp.
oral taxon 335 str. F0486]
gi|394752566|gb|EJF36246.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Capnocytophaga sp.
oral taxon 335 str. F0486]
Length = 471
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 53/94 (56%), Gaps = 4/94 (4%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENY-ALGLHAPGFFDKVLNIDKCLLQSEPANLVLAA 188
+MEFSF RW + + K+ D I N ALG H G +DK+L+IDKC LQ++P+N +
Sbjct: 132 KMEFSFSDMRWLTPDEI-KKADEINNRNALGFHIAGAWDKILDIDKCYLQADPSNAIRLE 190
Query: 189 VQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGSF 222
++ + ++ Y +G L+ +M+R S
Sbjct: 191 IKRFALANEMPF--YSPRQQTGLLRTMMIRISSI 222
>gi|383449948|ref|YP_005356669.1| tRNA (uracil-5-)-methyltransferase [Flavobacterium indicum
GPTSA100-9]
gi|380501570|emb|CCG52612.1| tRNA (uracil-5-)-methyltransferase [Flavobacterium indicum
GPTSA100-9]
Length = 470
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEF F RW + D A+G H P +DK+L+I KC LQ +P+N + +
Sbjct: 134 KMEFGFSSSRWMTDAEIQSGEDLDNKNAVGFHIPRMWDKILDIKKCHLQQDPSNAIRNEI 193
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+ + + LS Y+ +H G L+ LM+RT S
Sbjct: 194 RRFANEN--NLSFYNPRNHEGLLRTLMIRTAS 223
>gi|409123266|ref|ZP_11222661.1| RNA methyltransferase [Gillisia sp. CBA3202]
Length = 469
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSF RW + D + ALG H PG +DK+L+I KC LQ +P+N + V
Sbjct: 133 KMEFSFSDSRWLTLNEINSDQDFDDKNALGFHIPGMWDKILDIKKCHLQEDPSNAIRNHV 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+++ + ++ + G L+ LM+RT S
Sbjct: 193 KEFAIANDIPF--FNTRNQHGLLRTLMIRTSS 222
>gi|167762843|ref|ZP_02434970.1| hypothetical protein BACSTE_01201 [Bacteroides stercoris ATCC
43183]
gi|167699183|gb|EDS15762.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides stercoris
ATCC 43183]
Length = 480
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 58/99 (58%), Gaps = 7/99 (7%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+F KRW E + + + + A+G H P FDKVL I+KC LQ + +N + AV
Sbjct: 133 KLEFTFSNKRWLTAEEVRQNVVYEQMNAVGFHIPNAFDKVLAIEKCWLQDDISNRIRNAV 192
Query: 190 QDYWRDPQLGLSPY-DVHSHSGFLKHLMLR---TGSFMI 224
+DY + P+ ++ +H G L+++++R TG M+
Sbjct: 193 RDYAYEHNY---PFINLRTHEGMLRNMIVRTSTTGELMV 228
>gi|325285147|ref|YP_004260937.1| RNA methyltransferase, TrmA family [Cellulophaga lytica DSM 7489]
gi|324320601|gb|ADY28066.1| RNA methyltransferase, TrmA family [Cellulophaga lytica DSM 7489]
Length = 470
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSF RW + + + + ALG H PG +DK+L+I KC LQ++P+N +
Sbjct: 133 KMEFSFSDSRWLTLDEVKSDKEIEDRNALGFHIPGMWDKILDIKKCHLQADPSNAIRLET 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+++ + ++ ++ H+G L+ LM+RT S
Sbjct: 193 KEFA--TKNNMTFFNPRHHTGELRTLMIRTSS 222
>gi|258648401|ref|ZP_05735870.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella tannerae
ATCC 51259]
gi|260851571|gb|EEX71440.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella tannerae
ATCC 51259]
Length = 473
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 57/105 (54%), Gaps = 5/105 (4%)
Query: 123 RKKGSYAEMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPA 182
+ K ++EF F K+W KE + R + A+G H PG FDK+L++ +C L +
Sbjct: 126 KTKAYRNKLEFGFSNKKWLTKEEIESRVVFPDMNAVGFHIPGAFDKILDLKECFLMDDFN 185
Query: 183 NLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMI 224
N + ++ Y + G S +D+ + +G L+++MLR TG M+
Sbjct: 186 NRIRNGLRSYIIEK--GYSFFDLRNQTGLLRNMMLRKTSTGEIMV 228
>gi|346223571|ref|ZP_08844713.1| RNA methyltransferase [Anaerophaga thermohalophila DSM 12881]
gi|346227061|ref|ZP_08848203.1| RNA methyltransferase [Anaerophaga thermohalophila DSM 12881]
Length = 469
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+F +RW E + LG H PG FDKV++I++C LQ P+N V AV
Sbjct: 133 KLEFTFSNRRWLSPEEMESDEIISNKNGLGFHIPGMFDKVIDIEECHLQRTPSNEVRLAV 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+++ + +D+ + GFL+ L++RT S
Sbjct: 193 RNFALENNWPF--FDLKTQEGFLRTLIIRTSS 222
>gi|404449886|ref|ZP_11014873.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Indibacter
alkaliphilus LW1]
gi|403764365|gb|EJZ25266.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Indibacter
alkaliphilus LW1]
Length = 470
Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+++F+F RW +E + G E ALG H P FDK+++I+ C LQ +N V +
Sbjct: 133 KLDFTFSNNRWLTREEIDS-GAEFERNALGFHIPKMFDKIVDIEHCYLQGNISNEVRNEL 191
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+++ D + LS YD+ + G L++L++R+ S
Sbjct: 192 REFALDNK--LSFYDIRNQVGLLRNLIIRSTS 221
>gi|429750782|ref|ZP_19283788.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Capnocytophaga sp.
oral taxon 332 str. F0381]
gi|429163907|gb|EKY06087.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Capnocytophaga sp.
oral taxon 332 str. F0381]
Length = 468
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 51/93 (54%), Gaps = 4/93 (4%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENY-ALGLHAPGFFDKVLNIDKCLLQSEPANLVLAA 188
+MEFSF RW E + K D IEN LG H G +DKVL+ID+C LQ++P+N +
Sbjct: 132 KMEFSFSDMRWLTPEEI-KNADEIENRNGLGFHISGAWDKVLDIDECHLQADPSNAIRQE 190
Query: 189 VQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
++ + + Y GFL+ +M+R S
Sbjct: 191 IKRFALVHNMAF--YSPRQQMGFLRSMMIRITS 221
>gi|410099634|ref|ZP_11294603.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Parabacteroides
goldsteinii CL02T12C30]
gi|409218001|gb|EKN10974.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Parabacteroides
goldsteinii CL02T12C30]
Length = 471
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+F K+W +E + +G H PG FDKVL+I KC LQ++ +N + +
Sbjct: 133 KLEFTFSNKKWLTEEEVKSGATFDCMNGVGFHIPGMFDKVLDIHKCWLQNDISNRIRLYI 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
++Y + G +D+ + GF++ LM+RT S
Sbjct: 193 KEYCLSHE-GYPFFDLRNQEGFIRTLMIRTAS 223
>gi|312129534|ref|YP_003996874.1| 23S rRNA m(5)u-1939 methyltransferase [Leadbetterella byssophila
DSM 17132]
gi|311906080|gb|ADQ16521.1| 23S rRNA m(5)U-1939 methyltransferase [Leadbetterella byssophila
DSM 17132]
Length = 467
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 61/117 (52%), Gaps = 18/117 (15%)
Query: 118 IGRVT---------RKKGSY--AEMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFF 166
IG+VT KK Y ++EF+F RWF ++ + + ++ ALG H P F
Sbjct: 108 IGKVTLRNTSPILGSKKTQYYRNKLEFTFSNSRWFTEKEVASEAE-LDRDALGFHVPRRF 166
Query: 167 DKVLNIDKCLLQSEPANLVLAAVQDYWRDP--QLGLSPYDVHSHSGFLKHLMLRTGS 221
DKVL I C LQ P+N AV+D++R+ G YD H GF + LM+RT S
Sbjct: 167 DKVLPIHHCYLQGGPSN----AVRDFFREEAKASGKPFYDHIVHKGFFRTLMIRTTS 219
>gi|86143081|ref|ZP_01061503.1| putative RNA methyltransferase [Leeuwenhoekiella blandensis MED217]
gi|85830526|gb|EAQ48985.1| putative RNA methyltransferase [Leeuwenhoekiella blandensis MED217]
Length = 457
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSF +W + + + ALG H PG +DK+L+IDKC LQ +P+N + V
Sbjct: 121 KMEFSFSDSKWLTLKQIQSDEIIEDRNALGFHIPGMWDKILDIDKCHLQRDPSNAIRNGV 180
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+++ + ++ + G L+ LM+RT S
Sbjct: 181 KEFATKNNIPF--FNARNQEGLLRTLMIRTSS 210
>gi|110598563|ref|ZP_01386831.1| RNA methyltransferase, TrmA family [Chlorobium ferrooxidans DSM
13031]
gi|110339797|gb|EAT58304.1| RNA methyltransferase, TrmA family [Chlorobium ferrooxidans DSM
13031]
Length = 480
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 55/90 (61%), Gaps = 3/90 (3%)
Query: 130 EMEFSFGPKRWF-PKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAA 188
++EFS R+ P+E + + +N+ALG H PG F+KV++ID C L +E N VL
Sbjct: 136 KIEFSCSSMRYLLPEELSQEELERPKNFALGFHTPGNFEKVIDIDYCYLATELMNRVLKL 195
Query: 189 VQDYWRDPQLGLSPYDVHSHSGFLKHLMLR 218
+++ L PY V +H+GFL++L++R
Sbjct: 196 TREFALANN--LEPYGVRAHTGFLRNLVVR 223
>gi|21672850|ref|NP_660915.1| RNA methyltransferase [Chlorobium tepidum TLS]
gi|50401598|sp|Q8KGF9.1|Y009_CHLTE RecName: Full=Uncharacterized RNA methyltransferase CT0009
gi|21645898|gb|AAM71257.1| RNA methyltransferase, TrmA family [Chlorobium tepidum TLS]
Length = 483
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 54/92 (58%), Gaps = 7/92 (7%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHI---ENYALGLHAPGFFDKVLNIDKCLLQSEPANLVL 186
++EFS R+ + + D + + +ALG HAPG F+KVL++D C L E N VL
Sbjct: 141 KVEFSCSNMRYLLQSEID--SDQLAKPKTFALGFHAPGNFEKVLDLDTCYLAKECMNRVL 198
Query: 187 AAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR 218
++D+ + GL PY +H G+L++LMLR
Sbjct: 199 NVLRDFA--IERGLEPYAAKAHEGYLRNLMLR 228
>gi|427383048|ref|ZP_18879768.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides
oleiciplenus YIT 12058]
gi|425728962|gb|EKU91815.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides
oleiciplenus YIT 12058]
Length = 457
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 57/99 (57%), Gaps = 5/99 (5%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++E++F KRW +E + + + + A+G H P FDKVL I+KC LQ + +N + AV
Sbjct: 115 KLEYTFSNKRWLTEEEIKQNVVYDQMNAVGFHIPNAFDKVLAIEKCWLQDDISNRIRNAV 174
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMIC 225
+DY + S ++ + G L+++++R TG M+
Sbjct: 175 RDYAYEH--NYSFINLRTQEGMLRNMIVRTSTTGELMVI 211
>gi|406659955|ref|ZP_11068091.1| putative RNA methyltransferase [Cecembia lonarensis LW9]
gi|405556358|gb|EKB51297.1| putative RNA methyltransferase [Cecembia lonarensis LW9]
Length = 468
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 56/100 (56%), Gaps = 6/100 (6%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+++F+F RW KE + + E ALG H P FDK+++ID C LQ +N + ++
Sbjct: 132 KLDFTFSNNRWLTKEEINSE-ETFERNALGFHIPKMFDKIVDIDHCYLQGNASNDIRNSL 190
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMICA 226
+ + Q GL+ +D+ + G L++L++R TG M+
Sbjct: 191 RTFAL--QEGLTFFDLRNQVGLLRNLIIRSSSTGEIMVIV 228
>gi|347536997|ref|YP_004844422.1| tRNA (uracil-5-)-methyltransferase [Flavobacterium branchiophilum
FL-15]
gi|345530155|emb|CCB70185.1| tRNA (uracil-5-)-methyltransferase [Flavobacterium branchiophilum
FL-15]
Length = 471
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEF F RW +E + + ALG H P +DK+L+I C LQ P+N + A+
Sbjct: 134 KMEFGFSNARWMTEEEIQSQDTLSNKNALGFHIPKMWDKILDIHHCHLQENPSNDIRNAI 193
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+ + + L ++ H GFL+ LM+RT S
Sbjct: 194 RTFAIEHDLTF--FNPRLHEGFLRTLMIRTAS 223
>gi|189466070|ref|ZP_03014855.1| hypothetical protein BACINT_02440 [Bacteroides intestinalis DSM
17393]
gi|189434334|gb|EDV03319.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides
intestinalis DSM 17393]
Length = 476
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 57/99 (57%), Gaps = 5/99 (5%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++E++F KRW +E + + + + A+G H P FDKVL I+KC LQ + +N + AV
Sbjct: 133 KLEYTFSNKRWLTEEEVKQNVVYDQMNAVGFHIPNAFDKVLAIEKCWLQDDISNRIRNAV 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMIC 225
+DY + S ++ + G L+++++R TG M+
Sbjct: 193 RDYAYEH--DYSFINLRTQEGMLRNMIIRTSTTGELMVI 229
>gi|116747738|ref|YP_844425.1| RNA methyltransferase [Syntrophobacter fumaroxidans MPOB]
gi|116696802|gb|ABK15990.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Syntrophobacter
fumaroxidans MPOB]
Length = 488
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 130 EMEFSFGPKRWFPKESLPKRG-DHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAA 188
+MEF+F +RW E + G + LGLH +FDKV N++ CLL+S A ++
Sbjct: 145 KMEFTFSDRRWLTPEEIDAAGMRDAYTFTLGLHVRSWFDKVFNVEDCLLESAEAVEIVKE 204
Query: 189 VQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
+D+ R G+ Y + S GF + L++R G
Sbjct: 205 TRDWCRGS--GVPAYGIKSQRGFWRFLVIREG 234
Score = 43.1 bits (100), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 9/74 (12%)
Query: 57 HDAKPQFETFDSNNNDYFKPIRGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEK 116
H +K + T D +G+E EL+ E L + GK + +V G VV D +PG++
Sbjct: 6 HGSKDRLPTMDDLK-------KGREYELLVEKLVFGGKALARV--EGLVVFMDHAVPGQR 56
Query: 117 FIGRVTRKKGSYAE 130
+TRKK Y E
Sbjct: 57 VRALITRKKRQYCE 70
>gi|298373691|ref|ZP_06983680.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroidetes oral
taxon 274 str. F0058]
gi|298274743|gb|EFI16295.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroidetes oral
taxon 274 str. F0058]
Length = 477
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 4/94 (4%)
Query: 130 EMEFSFGPKRWFPK--ESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLA 187
++EF+F ++W ES + LG H PG FDKVL+I+KC LQ + +N +
Sbjct: 134 KLEFTFSNRKWLTNLDESEGIEANPKSMNGLGFHIPGMFDKVLDINKCWLQDDISNSIRN 193
Query: 188 AVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
++ Y + LS +D+ GFL+ LM+RT S
Sbjct: 194 EIRRYALNN--NLSFFDLRRQEGFLRTLMIRTAS 225
>gi|374600331|ref|ZP_09673333.1| 23S rRNA m(5)U-1939 methyltransferase [Myroides odoratus DSM 2801]
gi|423326070|ref|ZP_17303910.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Myroides odoratimimus
CIP 103059]
gi|373911801|gb|EHQ43650.1| 23S rRNA m(5)U-1939 methyltransferase [Myroides odoratus DSM 2801]
gi|404604738|gb|EKB04355.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Myroides odoratimimus
CIP 103059]
Length = 470
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 52/95 (54%), Gaps = 6/95 (6%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHI--ENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLA 187
+MEFSF RW E + GD I EN ALG H P +DK+L+I KC LQ +P+N +
Sbjct: 134 KMEFSFSNARWLTPEEIAS-GDEIGKEN-ALGFHIPKMWDKILDIQKCHLQQDPSNAIRN 191
Query: 188 AVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGSF 222
++ + LS ++ G L+ LM+RT S
Sbjct: 192 EIRTFANAN--NLSFFNPREQEGLLRTLMIRTSSI 224
>gi|213962114|ref|ZP_03390378.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Capnocytophaga
sputigena Capno]
gi|213955120|gb|EEB66438.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Capnocytophaga
sputigena Capno]
Length = 470
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 53/100 (53%), Gaps = 7/100 (7%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENY-ALGLHAPGFFDKVLNIDKCLLQSEPANLVLAA 188
+MEFSF RW E + + D IE LG H G +DK+L+IDKC LQ +P+N +
Sbjct: 132 KMEFSFSDMRWLTPEEI-QNADTIEQRNGLGFHIAGAWDKILDIDKCYLQEDPSNAIRLE 190
Query: 189 VQDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMIC 225
++ + + + Y +G L+ +M+R TG M+
Sbjct: 191 IKRFALENNIAF--YSPRQQTGVLRSMMIRISSTGEIMLV 228
>gi|402846900|ref|ZP_10895209.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Porphyromonas
sp. oral taxon 279 str. F0450]
gi|402267592|gb|EJU16987.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Porphyromonas
sp. oral taxon 279 str. F0450]
Length = 479
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 52/98 (53%), Gaps = 6/98 (6%)
Query: 130 EMEFSFGPKRW-FPKE--SLPKRGDHIENY---ALGLHAPGFFDKVLNIDKCLLQSEPAN 183
++EF+F KRW FP+E L R E Y LG H PG FDKVLNID C L +E +
Sbjct: 133 KLEFTFSHKRWLFPEELDILNARSTPPEPYELSGLGYHLPGMFDKVLNIDTCYLGAEVMD 192
Query: 184 LVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+ V+DY +D+ G ++ LMLRT S
Sbjct: 193 EIRLFVRDYCSARPEDYPYFDLRKQEGLMRTLMLRTTS 230
>gi|365118491|ref|ZP_09337055.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Tannerella sp.
6_1_58FAA_CT1]
gi|363649534|gb|EHL88645.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Tannerella sp.
6_1_58FAA_CT1]
Length = 484
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+F K W +E L ALG H PG FDKVL+I C LQ +N + A+
Sbjct: 148 KLEFTFSNKSWLTQEELQSTQTFDSRNALGFHIPGMFDKVLDIKTCWLQDNISNDIRLAI 207
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+ + D S +D+ G ++++++RT S
Sbjct: 208 RKFALDHD--YSFFDLREQRGLMRNIIIRTAS 237
>gi|409197886|ref|ZP_11226549.1| RNA methyltransferase [Marinilabilia salmonicolor JCM 21150]
Length = 469
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+F KRW E + LG H PG FDKV++I +C LQ +P+N + A+
Sbjct: 133 KLEFTFSNKRWLSLEEMESEEVIDNKNGLGFHIPGMFDKVIDIKECHLQRQPSNDIRMAI 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
++Y Q + +D+ + GFL+ L++RT S
Sbjct: 193 RNYAL--QNNWTFFDLRAQEGFLRTLIIRTTS 222
>gi|436837642|ref|YP_007322858.1| RNA methyltransferase, TrmA family [Fibrella aestuarina BUZ 2]
gi|384069055|emb|CCH02265.1| RNA methyltransferase, TrmA family [Fibrella aestuarina BUZ 2]
Length = 504
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 56/103 (54%), Gaps = 7/103 (6%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+ RW + + + + ++ +G H PG FDKVL I C LQ +P+N + AV
Sbjct: 145 KLEFTIADGRWLTQAEV-QTTERMDPRVVGFHVPGRFDKVLPIQHCYLQPDPSNDIRLAV 203
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMICAPV 228
DY L+ Y++ +H G+L+ L++R TG M+ V
Sbjct: 204 TDYLFAN--NLAAYNLKTHEGYLRTLIIRTADTTGQVMVTLQV 244
>gi|329955143|ref|ZP_08296100.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides clarus YIT
12056]
gi|328526142|gb|EGF53161.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides clarus YIT
12056]
Length = 475
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++E++F KRW E + + + + A+G H P FDKVL I+KC LQ + +N + AV
Sbjct: 133 KLEYTFSNKRWLTAEEVRQNVVYEQMNAVGFHIPNAFDKVLAIEKCWLQDDISNRIRNAV 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+DY + S ++ + G L+++++RT S
Sbjct: 193 RDYAYEHD--YSFINLRTQEGMLRNMIVRTSS 222
>gi|429726873|ref|ZP_19261658.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella sp. oral
taxon 473 str. F0040]
gi|429145313|gb|EKX88403.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella sp. oral
taxon 473 str. F0040]
Length = 473
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 57/100 (57%), Gaps = 4/100 (4%)
Query: 123 RKKGSYAEMEFSFGPKRWFPKESLPKRGDHIENY-ALGLHAPGFFDKVLNIDKCLLQSEP 181
R K ++EF F K+W E + K G+ + A+G H PG FDK+L+ID+C L ++
Sbjct: 126 RTKEYRNKLEFGFSNKKWLTLEQV-KSGEKFDQMNAVGFHIPGAFDKILDIDECHLMTDI 184
Query: 182 ANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
N + ++ + + L YD+ ++ G L+++MLRT S
Sbjct: 185 NNQIRNQLRTFAIEQNLEF--YDLRNNRGLLRNIMLRTAS 222
>gi|150024827|ref|YP_001295653.1| RNA methyltransferase [Flavobacterium psychrophilum JIP02/86]
gi|149771368|emb|CAL42837.1| Probable RNA methyltransferase [Flavobacterium psychrophilum
JIP02/86]
Length = 471
Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEF F RW + + + + ALG H P +DK+L+I KC LQ +P+N + +
Sbjct: 134 KMEFGFSNARWMTEAEIKSDQEFDDRNALGFHIPKMWDKILDITKCHLQGDPSNAIRNEI 193
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+ + + L ++ +H G L+ LM+RT S
Sbjct: 194 RRFAIENNLEF--FNPRNHEGLLRTLMIRTAS 223
>gi|189347986|ref|YP_001944515.1| RNA methyltransferase, TrmA family [Chlorobium limicola DSM 245]
gi|189342133|gb|ACD91536.1| RNA methyltransferase, TrmA family [Chlorobium limicola DSM 245]
Length = 482
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 56/94 (59%), Gaps = 3/94 (3%)
Query: 130 EMEFSFGPKRWF-PKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAA 188
++E S R+ P+E + ++ LG HAPG ++KV++ID C L +EP N +
Sbjct: 138 KVELSCSSIRYLMPEELSQEELSRSRDFGLGFHAPGNYEKVIDIDYCYLANEPMNSAVRL 197
Query: 189 VQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGSF 222
+++ + L+PY V +H+GFL++L+LRT +
Sbjct: 198 TREFALANR--LAPYAVKAHAGFLRNLVLRTSEY 229
>gi|333383751|ref|ZP_08475406.1| hypothetical protein HMPREF9455_03572 [Dysgonomonas gadei ATCC
BAA-286]
gi|332827346|gb|EGK00106.1| hypothetical protein HMPREF9455_03572 [Dysgonomonas gadei ATCC
BAA-286]
Length = 503
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 59/103 (57%), Gaps = 9/103 (8%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENY---ALGLHAPGFFDKVLNIDKCLLQSEPANLVL 186
++E++F K+W E L + G++ + LG H PG FDKVL+I+KC LQ + +N +
Sbjct: 165 KLEYTFSNKKWLTLEQL-RSGENFADMNMDGLGFHIPGMFDKVLDINKCWLQDDVSNQIR 223
Query: 187 AAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMICA 226
++ Y + G + +D+ + G +++L++R TG M+
Sbjct: 224 NFIRQYCHEK--GYTFFDLRNRGGLMRNLIIRTSTTGELMVIV 264
>gi|325954001|ref|YP_004237661.1| RNA methyltransferase, TrmA family [Weeksella virosa DSM 16922]
gi|323436619|gb|ADX67083.1| RNA methyltransferase, TrmA family [Weeksella virosa DSM 16922]
Length = 471
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 54/98 (55%), Gaps = 5/98 (5%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+F RW E + + + ALG H PG + KVL+I +C LQ +P+N +
Sbjct: 135 KLEFTFSNARWLTLEEINSTDEFNDRNALGFHIPGQWSKVLDIHRCHLQRDPSNAIRIEA 194
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRT---GSFMI 224
+ + + +L +D++ GFL+ LM+RT G M+
Sbjct: 195 KRFAIENKLDF--FDLYKQEGFLRTLMIRTSQNGQVMV 230
>gi|224539551|ref|ZP_03680090.1| hypothetical protein BACCELL_04456 [Bacteroides cellulosilyticus
DSM 14838]
gi|224518832|gb|EEF87937.1| hypothetical protein BACCELL_04456 [Bacteroides cellulosilyticus
DSM 14838]
Length = 476
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 56/99 (56%), Gaps = 5/99 (5%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++E++F KRW +E + + + + A+G H P FDKVL I+KC LQ + +N + V
Sbjct: 133 KLEYTFSNKRWLTEEEIKQNVVYEQMNAVGFHIPNAFDKVLAIEKCWLQDDISNRIRNTV 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMIC 225
+DY + S ++ + G L+++++R TG M+
Sbjct: 193 RDYAYEH--NYSFINLRTQEGMLRNMIIRTSTTGELMVI 229
>gi|145220570|ref|YP_001131279.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Chlorobium
phaeovibrioides DSM 265]
gi|145206734|gb|ABP37777.1| 23S rRNA m(5)U-1939 methyltransferase [Chlorobium phaeovibrioides
DSM 265]
Length = 484
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/102 (36%), Positives = 58/102 (56%), Gaps = 11/102 (10%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHI---ENYALGLHAPGFFDKVLNIDKCLLQSEPANLVL 186
++EFS KR+ E L D + +N+ALG HAPG F+KV++ +C L +E N VL
Sbjct: 135 KIEFSCSGKRYLRPEELSM--DELLQPKNFALGFHAPGNFEKVIDTARCHLATEEMNSVL 192
Query: 187 AAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMI 224
+D+ + + PY H+GFL++L++R TG M+
Sbjct: 193 RLTRDFALEN--AMEPYMAREHTGFLRNLVVRSSVHTGEVMV 232
>gi|423225091|ref|ZP_17211558.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides
cellulosilyticus CL02T12C19]
gi|392633547|gb|EIY27489.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides
cellulosilyticus CL02T12C19]
Length = 458
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 56/99 (56%), Gaps = 5/99 (5%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++E++F KRW +E + + + + A+G H P FDKVL I+KC LQ + +N + V
Sbjct: 115 KLEYTFSNKRWLTEEEIKQNVVYEQMNAVGFHIPNAFDKVLAIEKCWLQDDISNRIRNTV 174
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMIC 225
+DY + S ++ + G L+++++R TG M+
Sbjct: 175 RDYAYEH--NYSFINLRTQEGMLRNMIIRTSTTGELMVI 211
>gi|326335854|ref|ZP_08202033.1| 23S rRNA (uracil-5-)-methyltransferase [Capnocytophaga sp. oral
taxon 338 str. F0234]
gi|325691998|gb|EGD33958.1| 23S rRNA (uracil-5-)-methyltransferase [Capnocytophaga sp. oral
taxon 338 str. F0234]
Length = 469
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 2/93 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EFSF RW E + + + LG H G +DKVL+I KC LQ +P+N + A+
Sbjct: 133 KIEFSFSESRWLTSEEIESKEEINNRNGLGFHIAGAWDKVLDIHKCYLQEDPSNAIRNAI 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGSF 222
++Y G + Y+ SHSG+L+ +M+R S
Sbjct: 193 KEYANTH--GYTFYNPCSHSGWLRTMMIRITSI 223
>gi|119358501|ref|YP_913145.1| RNA methyltransferase [Chlorobium phaeobacteroides DSM 266]
gi|119355850|gb|ABL66721.1| 23S rRNA m(5)U-1939 methyltransferase [Chlorobium phaeobacteroides
DSM 266]
Length = 476
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 57/91 (62%), Gaps = 3/91 (3%)
Query: 130 EMEFSFGPKRWF-PKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAA 188
++EFSF +R+ P E + ++ ++ALG HAPG F+KVL++D C L N VLA
Sbjct: 135 KIEFSFSARRYLMPGELVLEKPLSSPDFALGFHAPGNFEKVLDVDYCYLAPSSMNEVLAL 194
Query: 189 VQDYWRDPQLGLSPYDVHSHSGFLKHLMLRT 219
+ + + + LS Y S++G+L++L++R+
Sbjct: 195 TRSFCLERE--LSAYSTRSNTGYLRNLVIRS 223
>gi|423327429|ref|ZP_17305237.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Myroides odoratimimus
CCUG 3837]
gi|404606665|gb|EKB06201.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Myroides odoratimimus
CCUG 3837]
Length = 470
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSF RW E + + + ALG H P +DK+L+I KC LQ +P+N + +
Sbjct: 134 KMEFSFSNARWLTPEEVASGEEMGKENALGFHIPKMWDKILDIKKCHLQQDPSNEIRNEI 193
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+ + + L ++ G L+ LM+RT S
Sbjct: 194 RRFANEHNLAF--FNPREQEGLLRTLMIRTAS 223
>gi|373111319|ref|ZP_09525576.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Myroides odoratimimus
CCUG 10230]
gi|423130997|ref|ZP_17118672.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Myroides odoratimimus
CCUG 12901]
gi|371640508|gb|EHO06106.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Myroides odoratimimus
CCUG 10230]
gi|371643349|gb|EHO08903.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Myroides odoratimimus
CCUG 12901]
Length = 470
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSF RW E + + + ALG H P +DK+L+I KC LQ +P+N + +
Sbjct: 134 KMEFSFSNARWLTPEEVASGEEMGKENALGFHIPKMWDKILDIKKCHLQQDPSNEIRNEI 193
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+ + + L ++ G L+ LM+RT S
Sbjct: 194 RRFANEHNLAF--FNPREQEGLLRTLMIRTAS 223
>gi|410029257|ref|ZP_11279093.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Marinilabilia sp. AK2]
Length = 468
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 56/100 (56%), Gaps = 6/100 (6%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+++F+F RW K+ + + E ALG H P FDK+++ID C LQ +N + ++
Sbjct: 132 KLDFTFSNNRWLTKDEINSE-ETFERNALGFHIPKMFDKIVDIDHCYLQGNASNDIRNSL 190
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMICA 226
+ + Q GL+ +D+ + G L++L++R TG M+
Sbjct: 191 RTFAL--QEGLTFFDLRNQVGLLRNLIIRSSSTGEIMVIV 228
>gi|78187968|ref|YP_376011.1| 23S rRNA methyltransferase [Chlorobium luteolum DSM 273]
gi|78167870|gb|ABB24968.1| 23S rRNA m(5)U-1939 methyltransferase [Chlorobium luteolum DSM 273]
Length = 476
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 54/90 (60%), Gaps = 3/90 (3%)
Query: 130 EMEFSFGPKRWFPKESLPK-RGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAA 188
++EFS KR+ E + R +N+ALG HAPG F+KV++ID+C L ++ N VL
Sbjct: 135 KIEFSCSSKRYLLHEEIAADRLQAPKNFALGFHAPGNFEKVIDIDRCFLATDGMNRVLNL 194
Query: 189 VQDYWRDPQLGLSPYDVHSHSGFLKHLMLR 218
+++ L+ Y H+GFL++L++R
Sbjct: 195 TREFALLNT--LAAYGAKEHTGFLRNLVVR 222
>gi|256839936|ref|ZP_05545445.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Parabacteroides sp.
D13]
gi|256738866|gb|EEU52191.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Parabacteroides sp.
D13]
Length = 470
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+F K+W +E + +G H PG FDKVL+I KC LQ + +N + V
Sbjct: 133 KLEFTFSNKKWLTEEEIQSGASFDCMNGVGFHIPGMFDKVLDIHKCWLQDDISNKIRLCV 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
++Y + +D+ + GF++ LM+RT S
Sbjct: 193 KEYCLSHE-RYPFFDLRNQEGFVRTLMIRTAS 223
>gi|343085460|ref|YP_004774755.1| TrmA family RNA methyltransferase [Cyclobacterium marinum DSM 745]
gi|342353994|gb|AEL26524.1| RNA methyltransferase, TrmA family [Cyclobacterium marinum DSM 745]
Length = 470
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 3/90 (3%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+++F+F RW +E + G+ E ALG H P FDK+++ID C LQ +N V +
Sbjct: 132 KLDFTFSNNRWLTREEIDS-GETFERNALGFHVPKRFDKIIDIDHCYLQGNISNDVRNEL 190
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRT 219
+ GL YD+ + G L++L++RT
Sbjct: 191 GAFALKE--GLGYYDIINQKGLLRNLIIRT 218
>gi|229495436|ref|ZP_04389171.1| 23S rRNA-methyltransferase RumA [Porphyromonas endodontalis ATCC
35406]
gi|229317879|gb|EEN83777.1| 23S rRNA-methyltransferase RumA [Porphyromonas endodontalis ATCC
35406]
Length = 475
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
Query: 130 EMEFSFGPKRWFPKE---SLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVL 186
++EF+F +RW E SLP+ +N LG H PG FDKVL+I++C L +E +N +
Sbjct: 133 KLEFTFSNRRWRTSEELASLPEGLGEADNSGLGFHIPGKFDKVLDIEECHLGNELSNRIR 192
Query: 187 AAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
V+ Y + YD+ + G ++ LM+RT S
Sbjct: 193 NFVRAYCLERIERYPFYDLRAQEGGMRTLMIRTTS 227
>gi|333030806|ref|ZP_08458867.1| RNA methyltransferase, TrmA family [Bacteroides coprosuis DSM
18011]
gi|332741403|gb|EGJ71885.1| RNA methyltransferase, TrmA family [Bacteroides coprosuis DSM
18011]
Length = 475
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 55/94 (58%), Gaps = 4/94 (4%)
Query: 130 EMEFSFGPKRWFPKE--SLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLA 187
++EF+F KRW +E +L K + LG H PG FDKVL+I+KC LQ++ +N +
Sbjct: 133 KLEFTFSDKRWLTQEEINLDKEFSGNQKNGLGFHIPGAFDKVLDIEKCWLQNDISNRIRN 192
Query: 188 AVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
V+++ +S +++ G L+ L++RT S
Sbjct: 193 GVREFATAND--ISFFNLREQVGVLRSLVVRTSS 224
>gi|449018165|dbj|BAM81567.1| similar to RNA methyltransferase [Cyanidioschyzon merolae strain
10D]
Length = 699
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 63/108 (58%), Gaps = 7/108 (6%)
Query: 119 GRVTRKKG----SYAEMEFSFGPKRWFPKESLPKRGDHIEN-YALGLHAPGFFDKVLNID 173
G+VT ++G + E S G KR ++ P+ G+ + +ALGLH P +DKVL I+
Sbjct: 251 GKVTLRQGRDTSTRDENTVSSGRKRPG-TDTAPESGEDMRTGFALGLHVPRRYDKVLCIE 309
Query: 174 KCLLQSEPANLVLAAVQDYWRD-PQLGLSPYDVHSHSGFLKHLMLRTG 220
C LQ + AN +L V+ + R + L PYD+ H GFL++L++RT
Sbjct: 310 DCALQIDVANEILRFVERHCRPLAETLLPPYDLVEHVGFLRNLVIRTA 357
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Query: 76 PIRGQELELVCESLAY-KGKGVCKVA---DTGFVVLCDRVLPGEKFIGRVTRKKGSYAE 130
P RG +EL ESLA+ G GV ++ + FVVL +PGE+ R+ R+K ++AE
Sbjct: 83 PSRGLLVELAVESLAHGTGMGVSRLQLSENESFVVLVHNAIPGERVRARIIRRKRNHAE 141
>gi|423134687|ref|ZP_17122334.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Myroides odoratimimus
CIP 101113]
gi|371645502|gb|EHO11025.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Myroides odoratimimus
CIP 101113]
Length = 470
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSF RW E + + + ALG H P +DK+L+I KC LQ +P+N + +
Sbjct: 134 KMEFSFSNARWLTPEEVASGEEMGKENALGFHIPKMWDKILDIKKCHLQQDPSNEIRNEI 193
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+ + + L ++ G L+ LM+RT S
Sbjct: 194 RRFANEHNLTF--FNPREQEGLLRTLMIRTAS 223
>gi|288803297|ref|ZP_06408730.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella
melaninogenica D18]
gi|288334117|gb|EFC72559.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella
melaninogenica D18]
Length = 474
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 7/100 (7%)
Query: 130 EMEFSFGPKRWFPKESLPK--RGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLA 187
++EF KRW+ +E L +G + A+G H G FDKV I+KC L + N +
Sbjct: 133 KLEFGCANKRWYTEEELKALPKGVGLAEGAIGFHITGAFDKVYPIEKCWLMDDLCNKIRK 192
Query: 188 AVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMI 224
A++DY G+ YD+ + G L+ +M+R TG +M+
Sbjct: 193 AIRDYAF--STGMKFYDIRAQHGLLRDIMVRNSNTGEWMV 230
>gi|402831687|ref|ZP_10880364.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Capnocytophaga sp.
CM59]
gi|402281074|gb|EJU29766.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Capnocytophaga sp.
CM59]
Length = 472
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EFSF RW E + + LG H G +DKVL+I KC LQ +P+N + +
Sbjct: 133 KIEFSFSETRWLTPEEIASKETIDSRNGLGFHIAGAWDKVLDIHKCHLQQDPSNAIRNTL 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGSF 222
+ Y G + Y+ +H+G+L+ +M+R S
Sbjct: 193 KAYALSQ--GYTFYNPRTHTGWLRTIMIRITSL 223
>gi|332881940|ref|ZP_08449582.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Capnocytophaga sp.
oral taxon 329 str. F0087]
gi|332680175|gb|EGJ53130.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Capnocytophaga sp.
oral taxon 329 str. F0087]
Length = 467
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 52/99 (52%), Gaps = 5/99 (5%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSF RW E + K + + LG H G +DKVL+I KC LQ+ P+N + +
Sbjct: 132 KMEFSFSDMRWLTPEEIKKADEITDRNGLGFHIAGAWDKVLDIKKCYLQAVPSNAIRLEI 191
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMIC 225
+ + + + +S Y G L+ +++R TG M+
Sbjct: 192 KRFALENE--MSFYSPRMQQGLLRSMIIRLSSTGELMVV 228
>gi|384098461|ref|ZP_09999577.1| RNA methyltransferase [Imtechella halotolerans K1]
gi|383835718|gb|EID75141.1| RNA methyltransferase [Imtechella halotolerans K1]
Length = 469
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSF RW + + + + ALG H PG +DK+L+I KC LQ +P+N + +
Sbjct: 133 KMEFSFSDSRWLTLDEIQSTEEIEDRNALGFHIPGAWDKILDIRKCHLQRDPSNAIRLEI 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+ + ++ ++ G L+ +M+RT S
Sbjct: 193 KSFALKNEMPF--FNARHQRGLLRSVMIRTSS 222
>gi|159465141|ref|XP_001690781.1| tRNA (uracil-5-)-methyltransferase [Chlamydomonas reinhardtii]
gi|158279467|gb|EDP05227.1| tRNA (uracil-5-)-methyltransferase [Chlamydomonas reinhardtii]
Length = 746
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 36/52 (69%)
Query: 79 GQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAE 130
G ELEL C LA +GKGVC + +GFVVL +R LPGEK + ++T K YAE
Sbjct: 331 GDELELECARLALEGKGVCLLPPSGFVVLVERTLPGEKVLAKITLAKKGYAE 382
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 10/91 (10%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDK--CLLQSEPANLVLA 187
++ F F + W P + ++ ALGL PG D VL + + C LQ E AN VL
Sbjct: 471 KLMFHFSSRCWLPPSKV------VDRPALGLLRPGSADVVLPVTQHGCQLQDETANAVLK 524
Query: 188 AVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR 218
V+ + G+ PY+ S G LKH+++R
Sbjct: 525 RVEQWVA--AAGVKPYNDKSGKGILKHVVIR 553
>gi|373460446|ref|ZP_09552199.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella maculosa OT
289]
gi|371956093|gb|EHO73889.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella maculosa OT
289]
Length = 481
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 56/106 (52%), Gaps = 14/106 (13%)
Query: 130 EMEFSFGPKRWFPKESLP--------KRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEP 181
++EF KRW+ KE + K G+ E+ A+G H G FDK+ I+KCLL +
Sbjct: 133 KLEFGCANKRWYTKEEIEAMPPREAGKEGNLNES-AIGFHITGAFDKIYPIEKCLLMDDL 191
Query: 182 ANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMI 224
N + + Y + G+S YD+ + G L+ LM+R TG FM+
Sbjct: 192 HNQIRNEISRYAKAQ--GMSFYDIRAQHGLLRGLMMRNSNTGEFML 235
>gi|429752979|ref|ZP_19285809.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Capnocytophaga sp.
oral taxon 326 str. F0382]
gi|429175341|gb|EKY16787.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Capnocytophaga sp.
oral taxon 326 str. F0382]
Length = 470
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 5/99 (5%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSF RW E + + LG H G +DK+L+IDKC LQ +P+N + +
Sbjct: 132 KMEFSFSDMRWLTPEEIQNANTIEQRNGLGFHIAGAWDKILDIDKCYLQEDPSNAIRLEI 191
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMIC 225
+ + + + Y +G L+ +M+R TG M+
Sbjct: 192 KRFALENNIPF--YSPRQQTGVLRSMMIRISSTGEIMLV 228
>gi|311747752|ref|ZP_07721537.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Algoriphagus sp. PR1]
gi|311302702|gb|EFQ79251.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Algoriphagus sp. PR1]
Length = 468
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 53/92 (57%), Gaps = 3/92 (3%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+++F+F K+W E + D + ALG H P FDK++++D C LQ +N V +
Sbjct: 132 KLDFTFSNKKWLTLEQIQSE-DEFDRNALGFHIPKMFDKIVDVDHCYLQGGISNDVRNEL 190
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+ + + + LS YD+ + G L++L++RT S
Sbjct: 191 RAFALENE--LSFYDIRNQVGLLRNLIIRTTS 220
>gi|445116577|ref|ZP_21378583.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella nigrescens
F0103]
gi|444840051|gb|ELX67093.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella nigrescens
F0103]
Length = 479
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 55/100 (55%), Gaps = 7/100 (7%)
Query: 130 EMEFSFGPKRWFPKESLPK--RGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLA 187
++EF+ KRW+ KE L G + A+G H G FDK+ I+KC+L + N V
Sbjct: 133 KLEFACSNKRWYTKEELEVLPEGVGLGQGAIGFHITGAFDKIYPINKCVLMDDYCNKVRN 192
Query: 188 AVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMI 224
A+ +Y + GLS YD+ G L+ +M+R TG +++
Sbjct: 193 AIYNYA--VKHGLSFYDIREQHGLLRDIMMRNSNTGEWLV 230
>gi|340350982|ref|ZP_08673950.1| TrmA family RNA methyltransferase [Prevotella nigrescens ATCC
33563]
gi|339606600|gb|EGQ11567.1| TrmA family RNA methyltransferase [Prevotella nigrescens ATCC
33563]
Length = 479
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 55/100 (55%), Gaps = 7/100 (7%)
Query: 130 EMEFSFGPKRWFPKESLPK--RGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLA 187
++EF+ KRW+ KE L G + A+G H G FDK+ I+KC+L + N V
Sbjct: 133 KLEFACSNKRWYTKEELEVLPEGVGLGQGAIGFHITGAFDKIYPINKCVLMDDYCNKVRN 192
Query: 188 AVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMI 224
A+ +Y + GLS YD+ G L+ +M+R TG +++
Sbjct: 193 AIYNYA--VKHGLSFYDIREQHGLLRDIMMRNSNTGEWLV 230
>gi|218130910|ref|ZP_03459714.1| hypothetical protein BACEGG_02505 [Bacteroides eggerthii DSM 20697]
gi|317476221|ref|ZP_07935472.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides eggerthii
1_2_48FAA]
gi|217987254|gb|EEC53585.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides eggerthii
DSM 20697]
gi|316907632|gb|EFV29335.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacteroides eggerthii
1_2_48FAA]
Length = 475
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++E++F KRW E + + + + A+G H P FDKVL I+KC LQ + +N + AV
Sbjct: 133 KLEYTFSNKRWLTTEEVRQNVVYEQMNAVGFHIPNAFDKVLAIEKCWLQDDISNRIRNAV 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+D+ + S ++ + G L+++++RT S
Sbjct: 193 RDFAYEHD--YSFINLRTQEGMLRNMIVRTSS 222
>gi|431795575|ref|YP_007222479.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Echinicola
vietnamensis DSM 17526]
gi|430786340|gb|AGA76469.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Echinicola
vietnamensis DSM 17526]
Length = 467
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 54/92 (58%), Gaps = 3/92 (3%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+++F+F RW +E + G+ E ALG H P FDK++++D C LQ +N V A+
Sbjct: 132 KLDFTFSNNRWLTREQIDS-GEEFERNALGFHIPKRFDKIVDVDHCYLQGGLSNEVRNAL 190
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+++ + L +D+ +G L++L++RT +
Sbjct: 191 REFALENSLTF--FDMIKQNGLLRNLIIRTTT 220
>gi|345880319|ref|ZP_08831873.1| hypothetical protein HMPREF9431_00537 [Prevotella oulorum F0390]
gi|343923517|gb|EGV34204.1| hypothetical protein HMPREF9431_00537 [Prevotella oulorum F0390]
Length = 479
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 55/109 (50%), Gaps = 12/109 (11%)
Query: 126 GSYAEMEFSFGPKRWFPKESL----PKRGD---HIENYALGLHAPGFFDKVLNIDKCLLQ 178
G ++EF KRW+ E L P+ D H+ + A+G H G FDK+ I+KC L
Sbjct: 129 GYRNKLEFGCANKRWYTAEELAALPPRTEDGAGHLNDSAIGFHITGAFDKIYPIEKCWLM 188
Query: 179 SEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMI 224
+ N + + Y Q LS YD+ + G L+ LM+R TG FM+
Sbjct: 189 DDLQNRIRNEIYRYAVAEQ--LSFYDIKAQHGLLRSLMMRNSNTGEFML 235
>gi|408419696|ref|YP_006761110.1| 23S rRNA mehtyltransferase RumA [Desulfobacula toluolica Tol2]
gi|405106909|emb|CCK80406.1| RumA: predicted 23S rRNA mehtyltransferase [Desulfobacula toluolica
Tol2]
Length = 462
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 54/92 (58%), Gaps = 9/92 (9%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIE---NYALGLHAPGFFDKVLNIDKCLLQSEPANLVL 186
+MEFS KRW LP ++ E ++ +GLH PG FDKV++I +C + + N +L
Sbjct: 130 KMEFSCSSKRWL----LPWELENEEIKKDFGIGLHVPGTFDKVIDIKRCEIMPDLGNQIL 185
Query: 187 AAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR 218
V+++ ++ L Y++ +H GF + LMLR
Sbjct: 186 DDVRNFIKESD--LPAYNLRTHEGFWRFLMLR 215
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 83 ELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAE 130
EL LA+ G+G+ K GF V DR +PG+ ++T+KK S+AE
Sbjct: 10 ELEITDLAFGGRGLAK--PDGFPVFIDRCIPGDVVFAKITKKKKSWAE 55
>gi|336398620|ref|ZP_08579420.1| 23S rRNA m(5)U-1939 methyltransferase [Prevotella
multisaccharivorax DSM 17128]
gi|336068356|gb|EGN56990.1| 23S rRNA m(5)U-1939 methyltransferase [Prevotella
multisaccharivorax DSM 17128]
Length = 481
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 55/104 (52%), Gaps = 14/104 (13%)
Query: 130 EMEFSFGPKRWFPKESLPKR------GDHIENYALGLHAPGFFDKVLNIDKCLLQSEPAN 183
++EF +RWF KE L G+H A+G H G FDK+ I+KC L + N
Sbjct: 133 KLEFGCCDRRWFTKEELEDENLNLADGNH---SAIGFHITGAFDKIYPIEKCWLMDDLHN 189
Query: 184 LVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMI 224
V ++ Y + ++G++ YDV G L++LM R TG +M+
Sbjct: 190 QVRNEIERYAK--EIGMTFYDVRGQHGLLRNLMFRDSNTGEWML 231
>gi|319902370|ref|YP_004162098.1| 23S rRNA m(5)U-1939 methyltransferase [Bacteroides helcogenes P
36-108]
gi|319417401|gb|ADV44512.1| 23S rRNA m(5)U-1939 methyltransferase [Bacteroides helcogenes P
36-108]
Length = 475
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 55/98 (56%), Gaps = 5/98 (5%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++E++F KRW + + + + A+G H P FDKVL I+KC LQ + +N + AV
Sbjct: 133 KLEYTFSNKRWLTNAEIQQNVVYEQMNAVGFHIPNAFDKVLAIEKCWLQDDISNRIRNAV 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMI 224
+DY + S ++ + G L+++++R TG M+
Sbjct: 193 RDYAYEHD--YSFINLRTQEGMLRNMIVRTSTTGELMV 228
>gi|126661911|ref|ZP_01732910.1| putative RNA methyltransferase [Flavobacteria bacterium BAL38]
gi|126625290|gb|EAZ95979.1| putative RNA methyltransferase [Flavobacteria bacterium BAL38]
Length = 470
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEF F RW + + ALG H P +DK+L+I+KC LQ +P+N + +
Sbjct: 134 KMEFGFSNARWMTDAEIQSGTEFDNKNALGFHIPRMWDKILDIEKCHLQEDPSNEIRNEI 193
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+ + + L ++ + G L+ LM+RT S
Sbjct: 194 KRFANENNLTF--FNARAVEGLLRTLMIRTAS 223
>gi|429738628|ref|ZP_19272423.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella
saccharolytica F0055]
gi|429159551|gb|EKY02054.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella
saccharolytica F0055]
Length = 473
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 55/99 (55%), Gaps = 7/99 (7%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENY-ALGLHAPGFFDKVLNIDKCLLQSEPANLVLAA 188
++EF KRW KE + G+ +N A+G H G FDK+L I+KC L + N + A
Sbjct: 133 KLEFGCSNKRWLTKEQVAS-GETFDNMNAIGFHITGAFDKILPIEKCWLMDDLQNQIRNA 191
Query: 189 VQDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMI 224
++DY +S +D+ +G L+ +M+R TG +M+
Sbjct: 192 IRDYALAQH--ISFFDLRQQTGLLRDIMIRNSDTGEWMV 228
>gi|357043208|ref|ZP_09104907.1| hypothetical protein HMPREF9138_01379 [Prevotella histicola F0411]
gi|355368804|gb|EHG16217.1| hypothetical protein HMPREF9138_01379 [Prevotella histicola F0411]
Length = 474
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 53/100 (53%), Gaps = 7/100 (7%)
Query: 130 EMEFSFGPKRWFPKESLPK--RGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLA 187
++EF KRW+ E L G + A+G H G FDK+ I+KC L + N +
Sbjct: 133 KLEFGCANKRWYTAEELQALPEGVGLSEGAIGFHITGAFDKIYPIEKCWLMDDLCNEIRN 192
Query: 188 AVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMI 224
++DY Q G++ YD+ + G L+ +M+R TG +M+
Sbjct: 193 DIRDYAL--QSGMTFYDIRAQHGLLRDIMVRNSNTGEWMV 230
>gi|284036603|ref|YP_003386533.1| TrmA family RNA methyltransferase [Spirosoma linguale DSM 74]
gi|283815896|gb|ADB37734.1| RNA methyltransferase, TrmA family [Spirosoma linguale DSM 74]
Length = 476
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+ RW + ++ A+G H PG FDKVL I C LQ +P+N + A+
Sbjct: 140 KLEFTCAEGRWLTSAEVGT-NQPMDQRAVGFHVPGRFDKVLPIRHCYLQPDPSNAIREAI 198
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
Y Q ++ Y++ H+GFL+ L++RT
Sbjct: 199 DAYVL--QHDMTLYNLKMHTGFLRTLIIRTA 227
>gi|323345673|ref|ZP_08085896.1| TrmA family RNA methyltransferase [Prevotella oralis ATCC 33269]
gi|323093787|gb|EFZ36365.1| TrmA family RNA methyltransferase [Prevotella oralis ATCC 33269]
Length = 475
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 5/98 (5%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF F KRW KE + + + A+G H G FDK+ I+KC L + N + +
Sbjct: 133 KLEFGFSNKRWLTKEEVASGTEFSDMNAVGFHITGAFDKIYPIEKCHLMDDLHNKIRNEI 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMI 224
+DY LS +D+ +G L+ +M+R TG +M+
Sbjct: 193 RDYALAND--LSFFDIRQQTGLLRDMMIRNSNTGEWML 228
>gi|383812586|ref|ZP_09968021.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella sp. oral
taxon 306 str. F0472]
gi|383354787|gb|EID32336.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella sp. oral
taxon 306 str. F0472]
Length = 474
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 52/100 (52%), Gaps = 7/100 (7%)
Query: 130 EMEFSFGPKRWFPKESLPK--RGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLA 187
++EF KRW+ E L G + A+G H G FDK+ I+KC L N +
Sbjct: 133 KLEFGCANKRWYTAEELAALPEGVGLSGGAIGFHITGSFDKIYPIEKCWLMDNLCNEIRN 192
Query: 188 AVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMI 224
++DY + G++ YD+ + G L+ LMLR TG +M+
Sbjct: 193 DIRDYAL--ETGMTFYDIRAQHGLLRDLMLRNSNTGEWML 230
>gi|260592299|ref|ZP_05857757.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella veroralis
F0319]
gi|260535749|gb|EEX18366.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella veroralis
F0319]
Length = 474
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 52/100 (52%), Gaps = 7/100 (7%)
Query: 130 EMEFSFGPKRWFPKESLPK--RGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLA 187
++EF KRW+ E L G + A+G H G FDK+ I+KC L N +
Sbjct: 133 KLEFGCANKRWYTAEELAALPEGVGLSGGAIGFHITGSFDKIYPIEKCWLMDNLCNEIRN 192
Query: 188 AVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMI 224
++DY + G++ YD+ + G L+ LMLR TG +M+
Sbjct: 193 DIRDYAL--ETGMTFYDIRAQHGLLRDLMLRNSNTGEWML 230
>gi|304382443|ref|ZP_07364941.1| 23S rRNA (uracil-5-)-methyltransferase [Prevotella marshii DSM
16973]
gi|304336396|gb|EFM02634.1| 23S rRNA (uracil-5-)-methyltransferase [Prevotella marshii DSM
16973]
Length = 473
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 55/99 (55%), Gaps = 7/99 (7%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENY-ALGLHAPGFFDKVLNIDKCLLQSEPANLVLAA 188
++EF +RW + G+ +N A+G H G FDK+L I+KCLL + N + A
Sbjct: 133 KLEFGCSNRRWLTPHQISS-GETFDNMNAIGFHITGAFDKILPIEKCLLMDDLHNEIRNA 191
Query: 189 VQDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMI 224
++D+ D LS YD+ + G L+ +M+R TG +M+
Sbjct: 192 IRDFAIDAH--LSFYDLRAQHGLLRDIMIRNSNTGEWMV 228
>gi|373499665|ref|ZP_09590069.1| hypothetical protein HMPREF9140_00187 [Prevotella micans F0438]
gi|371956851|gb|EHO74629.1| hypothetical protein HMPREF9140_00187 [Prevotella micans F0438]
Length = 475
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 54/101 (53%), Gaps = 9/101 (8%)
Query: 130 EMEFSFGPKRWFPKE---SLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVL 186
++EF KRW+ KE SLP + A+G H G FDK+ I++C L NL+
Sbjct: 133 KLEFGCANKRWYTKEELASLPVDAG-LNQPAIGFHITGAFDKIYPIERCHLMDNLNNLIR 191
Query: 187 AAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMI 224
++DY ++ L YD H G L+++MLR TG +M+
Sbjct: 192 NEIRDYALQNEISL--YDQRLHEGLLRNIMLRNSNTGEWML 230
>gi|260912576|ref|ZP_05919108.1| TrmA family RNA methyltransferase [Prevotella sp. oral taxon 472
str. F0295]
gi|260633341|gb|EEX51499.1| TrmA family RNA methyltransferase [Prevotella sp. oral taxon 472
str. F0295]
Length = 502
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 5/98 (5%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF KRW +E + A+G H G FDK+L I+KC L + N + +
Sbjct: 162 KLEFGCSNKRWLTREEVASGATFDTMNAIGFHITGAFDKILPIEKCWLMDDLQNQIRNEI 221
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMI 224
+DY G+S +D+ +G L+ +M+R TG +M+
Sbjct: 222 RDYALTK--GISFFDLRQQTGLLRDVMIRNSDTGEWMV 257
>gi|255034870|ref|YP_003085491.1| TrmA family RNA methyltransferase [Dyadobacter fermentans DSM
18053]
gi|254947626|gb|ACT92326.1| RNA methyltransferase, TrmA family [Dyadobacter fermentans DSM
18053]
Length = 465
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+F RW KE L G ALG H P FDK+ +D C LQ +P+N + ++
Sbjct: 130 KLEFTFSNWRWLTKEQLDS-GQPFAKTALGFHVPKRFDKIFTVDHCHLQPDPSNAIRNSL 188
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+ + G YDV + G ++++++RT +
Sbjct: 189 HRFSEEK--GYPYYDVRFNVGVMRNVIIRTAN 218
>gi|340352319|ref|ZP_08675200.1| TrmA family RNA methyltransferase [Prevotella pallens ATCC 700821]
gi|339614499|gb|EGQ19196.1| TrmA family RNA methyltransferase [Prevotella pallens ATCC 700821]
Length = 474
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 7/100 (7%)
Query: 130 EMEFSFGPKRWFPKESLPK--RGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLA 187
++EF+ KRW+ KE L G + A+G H G FDK+ I+KC+L N V
Sbjct: 133 KLEFACSNKRWYTKEELDALPEGVGLAQGAIGFHITGAFDKIYPINKCVLMDNYCNKVRN 192
Query: 188 AVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMI 224
A+ +Y + + LS YD+ G L+ +M+R TG +++
Sbjct: 193 AIYNYAVEHK--LSFYDIREQHGLLRDIMMRNSNTGEWLV 230
>gi|282880269|ref|ZP_06288985.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella timonensis
CRIS 5C-B1]
gi|281305864|gb|EFA97908.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella timonensis
CRIS 5C-B1]
Length = 472
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 52/98 (53%), Gaps = 5/98 (5%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EFS KRW KE + A+G H G FDK+ I+KC L + N + +
Sbjct: 133 KLEFSCSNKRWLTKEEVSSGVQLDHKNAIGFHITGAFDKIYPIEKCWLMDDLCNQIRNEI 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMI 224
++Y + G+S +DV +G L+ +M+R TG +M+
Sbjct: 193 RNYALNN--GISFFDVKEQTGLLRDIMIRNSSTGEWMV 228
>gi|194337875|ref|YP_002019669.1| TrmA family RNA methyltransferase [Pelodictyon phaeoclathratiforme
BU-1]
gi|194310352|gb|ACF45052.1| RNA methyltransferase, TrmA family [Pelodictyon phaeoclathratiforme
BU-1]
Length = 488
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 3/90 (3%)
Query: 130 EMEFSFGPKRWF-PKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAA 188
++EFS R+ P+E + + +ALG H PG F+KV++ID C L E N VLA
Sbjct: 136 KIEFSCSNMRYLLPEELSMETLARPKEFALGFHTPGNFEKVIDIDYCYLAKESMNRVLAL 195
Query: 189 VQDYWRDPQLGLSPYDVHSHSGFLKHLMLR 218
+++ L PY +H+GFL++L++R
Sbjct: 196 TREFALAN--ALVPYGAKAHTGFLRNLVVR 223
>gi|345883542|ref|ZP_08834983.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella sp. C561]
gi|345043647|gb|EGW47702.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella sp. C561]
Length = 482
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 9/101 (8%)
Query: 130 EMEFSFGPKRWFPKE---SLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVL 186
++EF KRW+ E +LP+ +E A+G H G FDKV I+KC L N +
Sbjct: 141 KLEFGCANKRWYTAEELQALPEDAG-LEEGAIGFHITGAFDKVYPIEKCWLMDNFCNELR 199
Query: 187 AAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMI 224
++DY Q G+ YD+ + G L+ +M+R TG +M+
Sbjct: 200 NDIRDYAH--QTGMKFYDIRAQHGLLRDIMVRNSNTGEWMV 238
>gi|334146908|ref|YP_004509837.1| RNA methyltransferase [Porphyromonas gingivalis TDC60]
gi|333804064|dbj|BAK25271.1| RNA methyltransferase [Porphyromonas gingivalis TDC60]
Length = 478
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 56/96 (58%), Gaps = 5/96 (5%)
Query: 130 EMEFSFGPKRWF-PKESLPKRGDHIEN--YALGLHAPGFFDKVLNIDKCLLQSEPANLVL 186
++EF+F KRW P+E GD Y LG H PG FDKVL+I +C L ++ ++ +
Sbjct: 133 KLEFTFSNKRWLLPEEVQEVDGDFSPEVRYGLGFHIPGMFDKVLDIRECHLGAKVSDEIR 192
Query: 187 AAVQDY-WRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+++Y +DP+ +D+ + G ++ LM+RT S
Sbjct: 193 LFIREYCMQDPE-RYPFFDLRNQEGLMRTLMIRTTS 227
>gi|302345320|ref|YP_003813673.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella
melaninogenica ATCC 25845]
gi|302149971|gb|ADK96233.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella
melaninogenica ATCC 25845]
Length = 474
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 52/100 (52%), Gaps = 7/100 (7%)
Query: 130 EMEFSFGPKRWFPKESLPK--RGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLA 187
++EF KRW+ +E L G + A+G H G FDKV I+KC L + N +
Sbjct: 133 KLEFGCANKRWYTEEELKALPEGIGLAEGAIGFHITGAFDKVYPIEKCWLMDDLCNEIRK 192
Query: 188 AVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMI 224
++DY G+ YD+ + G L+ +M+R TG +M+
Sbjct: 193 DIRDYAL--STGMKFYDIRAQHGLLRDIMVRNSNTGEWMV 230
>gi|419969966|ref|ZP_14485485.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Porphyromonas
gingivalis W50]
gi|392611905|gb|EIW94627.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Porphyromonas
gingivalis W50]
Length = 478
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 56/96 (58%), Gaps = 5/96 (5%)
Query: 130 EMEFSFGPKRWF-PKESLPKRGDHIEN--YALGLHAPGFFDKVLNIDKCLLQSEPANLVL 186
++EF+F KRW P+E GD Y LG H PG FDKVL+I +C L ++ ++ +
Sbjct: 133 KLEFTFSNKRWLLPEEVQEVDGDFSPEVRYGLGFHIPGMFDKVLDIRECHLGAKVSDEIR 192
Query: 187 AAVQDY-WRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+++Y +DP+ +D+ + G ++ LM+RT S
Sbjct: 193 LFIREYCMQDPER-YPFFDLRNQEGLMRTLMIRTTS 227
>gi|281425818|ref|ZP_06256731.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella oris F0302]
gi|281400079|gb|EFB30910.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella oris F0302]
Length = 479
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 12/105 (11%)
Query: 130 EMEFSFGPKRWFPKE---SLPKRGDHIE----NYALGLHAPGFFDKVLNIDKCLLQSEPA 182
++EF KRW+ K+ ++P R + E A+G H G FDK+ I+KC L +
Sbjct: 133 KLEFGCANKRWYTKDEIAAMPPREEGTEGNLNESAIGFHITGAFDKIYPIEKCWLMDDLH 192
Query: 183 NLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMI 224
N + + Y ++ L YD+ + G L+ LM+R TG FM+
Sbjct: 193 NQIRNEINRYAKEQDLAF--YDIRAQHGLLRDLMMRNSNTGEFML 235
>gi|188995054|ref|YP_001929306.1| RNA methyltransferase [Porphyromonas gingivalis ATCC 33277]
gi|188594734|dbj|BAG33709.1| RNA methyltransferase [Porphyromonas gingivalis ATCC 33277]
Length = 478
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 56/96 (58%), Gaps = 5/96 (5%)
Query: 130 EMEFSFGPKRWF-PKESLPKRGDHIEN--YALGLHAPGFFDKVLNIDKCLLQSEPANLVL 186
++EF+F KRW P+E GD Y LG H PG FDKVL+I +C L ++ ++ +
Sbjct: 133 KLEFTFSNKRWLLPEEVREVDGDFSPEVRYGLGFHIPGMFDKVLDIRECHLGAKVSDEIR 192
Query: 187 AAVQDY-WRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+++Y +DP+ +D+ + G ++ LM+RT S
Sbjct: 193 LFIREYCMQDPER-YPFFDLRNQEGLMRTLMIRTTS 227
>gi|299140681|ref|ZP_07033819.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella oris C735]
gi|298577647|gb|EFI49515.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella oris C735]
Length = 479
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 54/105 (51%), Gaps = 12/105 (11%)
Query: 130 EMEFSFGPKRWFPKE---SLPKRGDHIE----NYALGLHAPGFFDKVLNIDKCLLQSEPA 182
++EF KRW+ K+ ++P R + E A+G H G FDK+ I+KC L +
Sbjct: 133 KLEFGCANKRWYTKDEIAAMPPREEGTEGNLNESAIGFHITGAFDKIYPIEKCWLMDDLH 192
Query: 183 NLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMI 224
N + + Y ++ L YD+ + G L+ LM+R TG FM+
Sbjct: 193 NQIRNEINRYAKEQDLAF--YDIRAQHGLLRDLMMRNSNTGEFML 235
>gi|34540828|ref|NP_905307.1| RNA methyltransferase [Porphyromonas gingivalis W83]
gi|50401491|sp|Q7MVG9.1|Y1095_PORGI RecName: Full=Uncharacterized RNA methyltransferase PG_1095
gi|34397142|gb|AAQ66206.1| RNA methyltransferase, TrmA family [Porphyromonas gingivalis W83]
Length = 465
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 56/96 (58%), Gaps = 5/96 (5%)
Query: 130 EMEFSFGPKRWF-PKESLPKRGDHIEN--YALGLHAPGFFDKVLNIDKCLLQSEPANLVL 186
++EF+F KRW P+E GD Y LG H PG FDKVL+I +C L ++ ++ +
Sbjct: 120 KLEFTFSNKRWLLPEEVQEVDGDFSPEVRYGLGFHIPGMFDKVLDIRECHLGAKVSDEIR 179
Query: 187 AAVQDY-WRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+++Y +DP+ +D+ + G ++ LM+RT S
Sbjct: 180 LFIREYCMQDPER-YPFFDLRNQEGLMRTLMIRTTS 214
>gi|193215656|ref|YP_001996855.1| RNA methyltransferase, TrmA family [Chloroherpeton thalassium ATCC
35110]
gi|193089133|gb|ACF14408.1| RNA methyltransferase, TrmA family [Chloroherpeton thalassium ATCC
35110]
Length = 475
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 57/98 (58%), Gaps = 13/98 (13%)
Query: 130 EMEFSFGPKRWF-PKE------SLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPA 182
+++FSF +R+ P+E L KR D +ALG HAP +DK ++ID C + S
Sbjct: 131 KVDFSFSNQRYLLPEEIGVEEGELQKRTD----FALGFHAPRRYDKAIDIDNCDIASPEM 186
Query: 183 NLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
N VL V+ + + + L+ Y +H GFL++L++R+G
Sbjct: 187 NTVLHIVKAFCLEKK--LTAYSTVTHEGFLRNLVIRSG 222
>gi|375149258|ref|YP_005011699.1| 23S rRNA m(5)U-1939 methyltransferase [Niastella koreensis GR20-10]
gi|361063304|gb|AEW02296.1| 23S rRNA m(5)U-1939 methyltransferase [Niastella koreensis GR20-10]
Length = 470
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 56/100 (56%), Gaps = 7/100 (7%)
Query: 130 EMEFSFGPKRWF-PKESLPKRGDHI-ENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLA 187
++EF+F +R+ P E + I + ALG H P FDKV++I+ C L +EP N +
Sbjct: 131 KLEFTFSNRRYLLPNEIAAAKDAAIDQENALGFHVPRLFDKVIDINTCHLMAEPVNAIKN 190
Query: 188 AVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMI 224
++ Y ++ L YD+ H G+L+ L++R TG M+
Sbjct: 191 TIRAYAKENNLTF--YDIRFHHGWLRTLIVRVATTGEVMV 228
>gi|429741681|ref|ZP_19275333.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Porphyromonas catoniae
F0037]
gi|429158327|gb|EKY00886.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Porphyromonas catoniae
F0037]
Length = 477
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
Query: 130 EMEFSFGPKRWF-PKE-SLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLA 187
++EF+F +RW P E S G+ + LG H PG FDKVL+ID+C L ++ + +
Sbjct: 133 KLEFTFSHRRWLQPNEFSALDEGEARDLSGLGFHLPGMFDKVLDIDQCHLGAKVLDDIRL 192
Query: 188 AVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
++ Y + +D+ GF++ LM+RT S
Sbjct: 193 FIRSYCKARPERYPYFDLRKQEGFMRTLMMRTTS 226
>gi|390943595|ref|YP_006407356.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Belliella baltica DSM
15883]
gi|390417023|gb|AFL84601.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Belliella baltica DSM
15883]
Length = 468
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+++F+F RW +E + + E LG H P FDK+++I+ C LQ + +N V +
Sbjct: 132 KLDFTFSNNRWLTREEIDSDAE-FERNTLGFHIPKMFDKIVDIEHCYLQGDISNEVRNEL 190
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+ + LS YD+ + G L++L++R+ S
Sbjct: 191 RAFALSN--SLSFYDIRNQVGLLRNLIIRSTS 220
>gi|387133433|ref|YP_006299405.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella intermedia
17]
gi|386376281|gb|AFJ08729.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella intermedia
17]
Length = 476
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 53/100 (53%), Gaps = 7/100 (7%)
Query: 130 EMEFSFGPKRWFPKESLPK--RGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLA 187
++EF+ KRW+ KE L G + A+G H G FDK+ I+KC+L + N V
Sbjct: 133 KLEFACSNKRWYTKEELEALPEGVGLAQGAIGFHITGAFDKIYPIEKCVLMDDYCNKVRN 192
Query: 188 AVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMI 224
A+ +Y + L +D+ G L+ +M+R TG +++
Sbjct: 193 AIYNYALEHNLTF--FDIREQHGLLRDIMMRNSNTGEWLV 230
>gi|303235612|ref|ZP_07322219.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella disiens
FB035-09AN]
gi|302484059|gb|EFL47047.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella disiens
FB035-09AN]
Length = 474
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 7/100 (7%)
Query: 130 EMEFSFGPKRWFPKESLPK--RGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLA 187
++EF KRW+ KE L + + A+G H G FDK+ I+KC L N V
Sbjct: 133 KLEFGCSNKRWYTKEELAELPEDAGLNQGAIGFHITGAFDKIYPIEKCFLMDNFCNKVRN 192
Query: 188 AVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMI 224
A++D+ G++ +D+ G L+ +M+R TG +M+
Sbjct: 193 AIRDFAL--ATGMTFFDIREQHGLLRDIMMRNSNTGEWMV 230
>gi|315608157|ref|ZP_07883149.1| 23S rRNA (uracil-5-)-methyltransferase [Prevotella buccae ATCC
33574]
gi|315250126|gb|EFU30123.1| 23S rRNA (uracil-5-)-methyltransferase [Prevotella buccae ATCC
33574]
Length = 490
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 5/98 (5%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF KRW KE + + A+G H G FDK+ I+KC L + N + A+
Sbjct: 151 KIEFGCSNKRWLTKEEVASGTEFTNMNAIGFHITGAFDKIYPIEKCGLMDDLNNRIRNAI 210
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMI 224
+D+ + +S YD+ G L+ +M+R TG +M+
Sbjct: 211 RDFAFATE--ISFYDIRQQHGLLRDVMIRNSNTGEWMV 246
>gi|402304688|ref|ZP_10823753.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella sp. MSX73]
gi|400380815|gb|EJP33625.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella sp. MSX73]
Length = 501
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 51/98 (52%), Gaps = 5/98 (5%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF KRW KE + + A+G H G FDK+ I+KC L + N + A+
Sbjct: 162 KIEFGCSNKRWLTKEEVASGTEFTNMNAIGFHITGAFDKIYPIEKCGLMDDLNNRIRNAI 221
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMI 224
+D+ + +S YD+ G L+ +M+R TG +M+
Sbjct: 222 RDFSFATE--ISFYDIRQQHGLLRDVMIRNSNTGEWMV 257
>gi|359404787|ref|ZP_09197604.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella stercorea
DSM 18206]
gi|357559970|gb|EHJ41387.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella stercorea
DSM 18206]
Length = 473
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 54/99 (54%), Gaps = 7/99 (7%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENY-ALGLHAPGFFDKVLNIDKCLLQSEPANLVLAA 188
++EF KRW +E + + G +N +G H G FDK+L I+KC L + N + A
Sbjct: 133 KLEFGCCNKRWLTREQIAE-GTQFDNMNGIGFHITGAFDKILPIEKCWLMDDLHNKIRNA 191
Query: 189 VQDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMI 224
++DY G++ +D+ G L+ +M+R TG +M+
Sbjct: 192 IRDYAFST--GMTFFDLRQQHGLLRDIMIRNSNTGEWMV 228
>gi|327314509|ref|YP_004329946.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella denticola
F0289]
gi|326945121|gb|AEA21006.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella denticola
F0289]
Length = 478
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 9/101 (8%)
Query: 130 EMEFSFGPKRWFPKE---SLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVL 186
++EF KRW+ E +LP+ E A+G H G FDKV I+KC L + N +
Sbjct: 133 KLEFGCASKRWYTAEELQALPEDAGLSEG-AIGFHITGAFDKVYPIEKCWLMDDLCNQIR 191
Query: 187 AAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMI 224
++DY G+ YD+ + G L+ +M+R TG +M+
Sbjct: 192 NDIRDYALGT--GMKFYDIRAQHGLLRDIMVRNSNTGEWMV 230
>gi|325859605|ref|ZP_08172738.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella denticola
CRIS 18C-A]
gi|325482885|gb|EGC85885.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella denticola
CRIS 18C-A]
Length = 478
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 9/101 (8%)
Query: 130 EMEFSFGPKRWFPKE---SLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVL 186
++EF KRW+ E +LP+ E A+G H G FDKV I+KC L + N +
Sbjct: 133 KLEFGCASKRWYTAEELQALPEDAGLSEG-AIGFHITGAFDKVYPIEKCWLMDDLCNQIR 191
Query: 187 AAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMI 224
++DY G+ YD+ + G L+ +M+R TG +M+
Sbjct: 192 NDIRDYALGT--GMKFYDIRAQHGLLRDIMVRNSNTGEWMV 230
>gi|317502954|ref|ZP_07961044.1| TrmA family RNA methyltransferase [Prevotella salivae DSM 15606]
gi|315665920|gb|EFV05497.1| TrmA family RNA methyltransferase [Prevotella salivae DSM 15606]
Length = 479
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 13/122 (10%)
Query: 113 PGEKFIGRVTRKKGSYAEMEFSFGPKRWFPKE---SLPKRGD----HIENYALGLHAPGF 165
P + +G V + K ++EF KRW+ KE +LP + + ++ A+G H G
Sbjct: 117 PFQPILGSV-KTKEYRNKLEFGCANKRWYTKEEIAALPPKEEGQEGNLSESAIGFHITGA 175
Query: 166 FDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSF 222
FDK+ I KC L + N + + Y ++ +S YD+ + G L+ LM+R TG F
Sbjct: 176 FDKIYPIKKCWLMDDLHNEIRNEISRYAKEN--SISFYDIRAQHGLLRDLMMRNSNTGEF 233
Query: 223 MI 224
M+
Sbjct: 234 ML 235
>gi|288925116|ref|ZP_06419052.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella buccae D17]
gi|288338306|gb|EFC76656.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella buccae D17]
Length = 480
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 5/98 (5%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF KRW KE + + A+G H G FDK+ I+KC L N + A+
Sbjct: 141 KIEFGCSNKRWLTKEEVASGTEFTNMNAIGFHITGAFDKIYPIEKCGLMDNLNNRIRNAI 200
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMI 224
+D+ + +S YD+ G L+ +M+R TG +M+
Sbjct: 201 RDFAFATE--ISFYDIRQQHGLLRDVMIRNSNTGEWMV 236
>gi|325269116|ref|ZP_08135736.1| TrmA family RNA methyltransferase [Prevotella multiformis DSM
16608]
gi|324988503|gb|EGC20466.1| TrmA family RNA methyltransferase [Prevotella multiformis DSM
16608]
Length = 474
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 53/101 (52%), Gaps = 9/101 (8%)
Query: 130 EMEFSFGPKRWFPKE---SLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVL 186
++EF KRW+ E +LP+ E A+G H G FDKV I+KC L + N +
Sbjct: 133 KLEFGCANKRWYTAEELQALPEDAGLSEG-AIGFHITGAFDKVYPIEKCWLMDDLCNQIR 191
Query: 187 AAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMI 224
++DY G++ YD+ G L+ +M+R TG +M+
Sbjct: 192 NDIRDYALGT--GMTFYDIRGQHGLLRDIMVRNSNTGEWMV 230
>gi|282877944|ref|ZP_06286753.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella buccalis
ATCC 35310]
gi|281299945|gb|EFA92305.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella buccalis
ATCC 35310]
Length = 508
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 54/100 (54%), Gaps = 9/100 (9%)
Query: 130 EMEFSFGPKRWFPKESLPK--RGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLA 187
++EF KRW E + + DH+ A+G H G FDK+ I+KC L + N +
Sbjct: 169 KLEFGCSNKRWLTWEEVTSGVKYDHMN--AIGFHITGAFDKIYPIEKCWLMDDLCNQIRN 226
Query: 188 AVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMI 224
++DY D +S +D+ + +G L+ +M+R TG +M+
Sbjct: 227 CIRDYAIDHD--ISFFDLRAQTGLLRDIMIRSANTGEWMV 264
>gi|443242295|ref|YP_007375520.1| RNA methyltransferase [Nonlabens dokdonensis DSW-6]
gi|442799694|gb|AGC75499.1| RNA methyltransferase [Nonlabens dokdonensis DSW-6]
Length = 472
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 5/99 (5%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSF RW E + + + ALG H PG +DK+L++D+C L + + +V
Sbjct: 135 KMEFSFSANRWLTLEEIQSDVEIEDKKALGFHIPGMWDKILHLDECHLHPQIGEDIRLSV 194
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMIC 225
+ + +S ++ SG L+ LMLR TG M+
Sbjct: 195 HAFAKAE--NISYFNPREKSGTLRTLMLRMSSTGENMVV 231
>gi|89890519|ref|ZP_01202029.1| RNA methyltransferase [Flavobacteria bacterium BBFL7]
gi|89517434|gb|EAS20091.1| RNA methyltransferase [Flavobacteria bacterium BBFL7]
Length = 485
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 5/99 (5%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSF RW E + + ALG H PG +DK+L++D+C L + +V
Sbjct: 148 KMEFSFSASRWLTLEEIQSEVQIEDKKALGFHIPGMWDKILHLDECHLHPAIGEQIRLSV 207
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMIC 225
+ Q + ++ +G L+ LMLR TG M+
Sbjct: 208 HAFAEAEQ--IEYFNPREKTGVLRTLMLRMSSTGEIMVV 244
>gi|261879348|ref|ZP_06005775.1| TrmA family RNA methyltransferase [Prevotella bergensis DSM 17361]
gi|270333911|gb|EFA44697.1| TrmA family RNA methyltransferase [Prevotella bergensis DSM 17361]
Length = 489
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 8/101 (7%)
Query: 130 EMEFSFGPKRWFPKESLPKRG---DHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVL 186
++EF KRWF +E L D + A+G H G FDK+ I KC L + N +
Sbjct: 133 KLEFGCCSKRWFTREELDNAELNLDSGNHAAIGFHIAGAFDKIYPIRKCWLMDDVHNEIR 192
Query: 187 AAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMI 224
++ Y + + YDV + G L+ LM R TG +M+
Sbjct: 193 NEIERYAKATNMTF--YDVRAQRGLLRSLMFRTSNTGGWMV 231
>gi|340346164|ref|ZP_08669291.1| TrmA family RNA methyltransferase [Prevotella dentalis DSM 3688]
gi|433651504|ref|YP_007277883.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella dentalis
DSM 3688]
gi|339612393|gb|EGQ17204.1| TrmA family RNA methyltransferase [Prevotella dentalis DSM 3688]
gi|433302037|gb|AGB27853.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella dentalis
DSM 3688]
Length = 488
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHI---ENYALGLHAPGFFDKVLNIDKCLLQSEPANLVL 186
++EF KRWF E L + +N A+G H G FDK+ I KC L + N +
Sbjct: 133 KLEFGCCNKRWFTHEELQNPSLDLATNDNSAIGFHITGAFDKIYPIRKCWLMDDLHNEIR 192
Query: 187 AAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+ Y + + G++ YDV + G L+ LM RT +
Sbjct: 193 NETERYAK--ETGMTFYDVRAQRGLLRSLMFRTSN 225
>gi|303273590|ref|XP_003056155.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462239|gb|EEH59531.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 549
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 39/54 (72%), Gaps = 3/54 (5%)
Query: 79 GQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVT--RKKGSYAE 130
G+E+++ C ++A+ G+GVCK GFV+LC+R +PGEK R+T +K G YAE
Sbjct: 43 GEEVDVECTAVAFGGRGVCKFPG-GFVILCERAVPGEKVHARITAIKKGGRYAE 95
>gi|389579882|ref|ZP_10169909.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Desulfobacter
postgatei 2ac9]
gi|389401517|gb|EIM63739.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Desulfobacter
postgatei 2ac9]
Length = 463
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIE-NYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAA 188
+MEFS RW + L D ++ + +GLH PG FDKV++I C + N +L
Sbjct: 130 KMEFSCSSMRWLLPDELSD--DTVKKGFGIGLHVPGTFDKVIDIHTCHIMPALGNEILET 187
Query: 189 VQDYWRDPQLGLSPYDVHSHSGFLKHLMLR 218
++ + + GL Y + +H GF + +MLR
Sbjct: 188 IRGFVAES--GLDAYHLRNHEGFWRFVMLR 215
>gi|284042250|ref|YP_003392590.1| RNA methyltransferase, TrmA family [Conexibacter woesei DSM 14684]
gi|283946471|gb|ADB49215.1| RNA methyltransferase, TrmA family [Conexibacter woesei DSM 14684]
Length = 456
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 12/91 (13%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++E+SFG E +RG+ I G HAPG +D+++ I C+L SE N V V
Sbjct: 135 KLEYSFG------TEGTAERGELI----FGFHAPGEWDRIVPIADCMLASERGNAVRDQV 184
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
+ R + GL+ YD + GFL++ ++R G
Sbjct: 185 LAFCR--EQGLTAYDRRTRRGFLRNCVIREG 213
Score = 39.7 bits (91), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 75 KPIRGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAE 130
+P R ELEL + LA+ G GV + G+V+ +PG++ +VT+ K Y E
Sbjct: 11 RPDRFAELELTIDDLAFGGNGVAR--HEGYVLFVHGAIPGDRVRAKVTKTKRDYGE 64
>gi|332299402|ref|YP_004441323.1| RNA methyltransferase, TrmA family [Porphyromonas asaccharolytica
DSM 20707]
gi|332176465|gb|AEE12155.1| RNA methyltransferase, TrmA family [Porphyromonas asaccharolytica
DSM 20707]
Length = 493
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 12/105 (11%)
Query: 130 EMEFSFGPKRWFPKE---SLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVL 186
++EF+F KRW +E SLP+ E +G H G FDKVL++ Q A+ +
Sbjct: 133 KVEFTFSKKRWLTEEELKSLPEEASEQELCGVGFHKAGMFDKVLDLHGVTCQI--ADPIA 190
Query: 187 AAVQDYWRDPQLGLSP----YDVHSHSGFLKHLMLRT---GSFMI 224
+ ++DY D L YD +H G ++ L++RT G M+
Sbjct: 191 SEIRDYLNDYCLARWEEYPYYDQRAHEGVMRTLLIRTTTLGGLMV 235
>gi|313886024|ref|ZP_07819762.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Porphyromonas
asaccharolytica PR426713P-I]
gi|312924554|gb|EFR35325.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Porphyromonas
asaccharolytica PR426713P-I]
Length = 493
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 12/105 (11%)
Query: 130 EMEFSFGPKRWFPKE---SLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVL 186
++EF+F KRW +E SLP+ E +G H G FDKVL++ Q A+ +
Sbjct: 133 KVEFTFSKKRWLTEEELKSLPEEASEQELCGVGFHKAGMFDKVLDLHGVTCQI--ADPIA 190
Query: 187 AAVQDYWRDPQLGLSP----YDVHSHSGFLKHLMLRT---GSFMI 224
+ ++DY D L YD +H G ++ L++RT G M+
Sbjct: 191 SEIRDYLNDYCLARWEEYPYYDQRAHEGVMRTLLIRTTTLGGLMV 235
>gi|288928551|ref|ZP_06422398.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella sp. oral
taxon 317 str. F0108]
gi|288331385|gb|EFC69969.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella sp. oral
taxon 317 str. F0108]
Length = 479
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 5/98 (5%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF KRW +E + A+G H G FDK+L I+KC L + N + +
Sbjct: 139 KLEFGCSNKRWLTREQVASGETFDTMNAIGFHITGAFDKILPIEKCWLMDDLQNQIRNEI 198
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMI 224
+DY + +D+ +G L+ +M+R TG +M+
Sbjct: 199 RDYALAHNITF--FDLRQQTGLLRDVMIRNSDTGEWMV 234
>gi|228469545|ref|ZP_04054538.1| 23S rRNA-methyltransferase RumA [Porphyromonas uenonis 60-3]
gi|228308895|gb|EEK17570.1| 23S rRNA-methyltransferase RumA [Porphyromonas uenonis 60-3]
Length = 493
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 12/105 (11%)
Query: 130 EMEFSFGPKRWFPKE---SLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVL 186
++EF+F KRW +E SLP+ E +G H G FDKVL++ Q A+ +
Sbjct: 133 KVEFTFSKKRWLTEEELKSLPEEASEQELCGVGFHKAGMFDKVLDLHGVTCQI--ADPIA 190
Query: 187 AAVQDYWRDPQLGLSP----YDVHSHSGFLKHLMLRT---GSFMI 224
+ ++DY D L YD +H G ++ L++RT G M+
Sbjct: 191 SEIRDYLNDYCLARWEEYPYYDQRAHEGVMRTLLIRTTTLGGLMV 235
>gi|367467000|ref|ZP_09467028.1| RNA methyltransferase TrmA family [Patulibacter sp. I11]
gi|365817867|gb|EHN12813.1| RNA methyltransferase TrmA family [Patulibacter sp. I11]
Length = 477
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/201 (25%), Positives = 78/201 (38%), Gaps = 61/201 (30%)
Query: 78 RGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAEM----EF 133
RG L+L ESLA+ G GV + + G+VV +PG++ VT++K Y E
Sbjct: 31 RGDVLDLRVESLAHGGNGVART-EHGWVVFVRGGIPGDRVRATVTKRKRDYGEALVQEVL 89
Query: 134 SFGPKRWFP-------------------------KESLPKRGDHIE-------------- 154
P+R P +++L + G H +
Sbjct: 90 EPSPERIAPAADHPGAPWQVLSYERQLEIKAEQVEDALRRLGGHADVEIEPIVPAEQQWR 149
Query: 155 -----NYALG----------LHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLG 199
Y+ G HA G + ++ +I+ CLL SE N V + D G
Sbjct: 150 YRNKLEYSFGEAQDGSLLCGFHAAGSWQRIEHIEDCLLASEVGNQARRVVHQWCVDE--G 207
Query: 200 LSPYDVHSHSGFLKHLMLRTG 220
L YD GFL++L++R G
Sbjct: 208 LGAYDRKLQQGFLRNLVVREG 228
>gi|313887799|ref|ZP_07821479.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus harei
ACS-146-V-Sch2b]
gi|312846142|gb|EFR33523.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus harei
ACS-146-V-Sch2b]
Length = 443
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 157 ALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLM 216
+LGLH F +++N C + E N + A V+ Y+ D LG + Y+ H GFL+HL+
Sbjct: 134 SLGLHVKNRFHEIINTTDCKIVDEDFNTIRAEVRTYFED--LGEAQYNRKRHEGFLRHLL 191
Query: 217 LR----TGSFMI 224
+R TG MI
Sbjct: 192 IRKATKTGEIMI 203
>gi|406874875|gb|EKD24732.1| RNA methyltransferase [uncultured bacterium (gcode 4)]
Length = 527
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 11/108 (10%)
Query: 123 RKKGSYAEMEFSFGP------KRWFP---KESLPKRGDHIENYALGLHAPGFFDKVLNID 173
++K ++EFSFG K W K+ K + + + ++G H G F K+++ID
Sbjct: 140 QEKNYRNKIEFSFGKYITNILKDWNVETLKDEKKKELNVLSDRSVGFHKQGEFSKIIDID 199
Query: 174 KCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
C L S+ AN + ++ GL +D +H GF +HL++R G+
Sbjct: 200 NCGLISDEANAIFQHIKGLCTTS--GLPVHDQMTHQGFFRHLVIREGT 245
>gi|282859473|ref|ZP_06268578.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella bivia
JCVIHMP010]
gi|424900901|ref|ZP_18324443.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella bivia DSM
20514]
gi|282587701|gb|EFB92901.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella bivia
JCVIHMP010]
gi|388593101|gb|EIM33340.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella bivia DSM
20514]
Length = 476
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 7/105 (6%)
Query: 125 KGSYAEMEFSFGPKRWFPKESLPK--RGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPA 182
K ++EF KRW+ E L G + A+G H G FDK+ I+KC L
Sbjct: 128 KAYRNKLEFGCANKRWYTAEELQDMPEGIGLTEGAIGFHITGAFDKIYPIEKCWLMDNLQ 187
Query: 183 NLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMI 224
N + ++++Y + L +D+ G L+ +M+R TG +M+
Sbjct: 188 NEIRNSIRNYALENNLTF--FDLRQQHGLLRDIMVRNSNTGEWMV 230
>gi|384248705|gb|EIE22188.1| S-adenosyl-L-methionine-dependent methyltransferase, partial
[Coccomyxa subellipsoidea C-169]
Length = 484
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 33/46 (71%), Gaps = 1/46 (2%)
Query: 84 LVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYA 129
L+C+SLA+ G+GVCK+ + G+ + CDR LPGE R+T K ++A
Sbjct: 1 LICQSLAFGGQGVCKLPE-GYTIFCDRALPGEHLRARITAVKKTHA 45
>gi|300854061|ref|YP_003779045.1| tRNA (uracil-5-) -methyltransferase, SAM-dependent [Clostridium
ljungdahlii DSM 13528]
gi|300434176|gb|ADK13943.1| tRNA (uracil-5-) -methyltransferase, SAM-dependent [Clostridium
ljungdahlii DSM 13528]
Length = 450
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 17/114 (14%)
Query: 107 LCDRVLPGEKFIGRVTRKKGSYAEMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFF 166
+CD G I + K G +MEFSFG ++ RG + LG+H G
Sbjct: 107 ICDFEFLG---IEKSPEKTGYRNKMEFSFGDEQ---------RGGQL---TLGMHIKGRS 151
Query: 167 DKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
V+N+D C L L+L V Y+R+ L Y + +H G+L++L+LR G
Sbjct: 152 FGVVNVDNCNLVDADFTLILDKVVTYFREKN--LPYYKIKNHEGYLRNLVLRKG 203
>gi|255074621|ref|XP_002500985.1| predicted protein [Micromonas sp. RCC299]
gi|226516248|gb|ACO62243.1| predicted protein, partial [Micromonas sp. RCC299]
Length = 473
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 31/49 (63%), Gaps = 1/49 (2%)
Query: 79 GQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGS 127
G L L C SLA+ G+GVCK+ GFVV CDR +PGE RVT KG
Sbjct: 3 GDVLTLECTSLAFGGRGVCKLP-GGFVVFCDRAVPGETLEARVTSLKGG 50
>gi|330752426|emb|CBL87377.1| 23S rRNA methyltransferas [uncultured Flavobacteriia bacterium]
Length = 469
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 126 GSYAEMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLV 185
G +MEFSF K+W ++ + + A+G H G +DK+++I+ C LQ + N +
Sbjct: 129 GFRNKMEFSFSSKKWLTEKEISSKKKIKNRDAIGFHISGMWDKIVDINYCHLQKDYVNEI 188
Query: 186 LAAVQDYWRDPQLGLSPYDVHSHS---GFLKHLMLRTGSF 222
++ Y D + Y +HS GFL+ L RT S
Sbjct: 189 RNEIKKYCID-----NNYVFFNHSKKEGFLRTLTFRTTSL 223
>gi|357634121|ref|ZP_09131999.1| RNA methyltransferase, TrmA family [Desulfovibrio sp. FW1012B]
gi|357582675|gb|EHJ48008.1| RNA methyltransferase, TrmA family [Desulfovibrio sp. FW1012B]
Length = 449
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 75/198 (37%), Gaps = 62/198 (31%)
Query: 79 GQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAE-------- 130
G ELEL + LA+ GKGV + G VV DR LPG +V R + +AE
Sbjct: 6 GMELELAVDRLAFGGKGVAR--QDGLVVFVDRGLPGATVRAKVERVRKGFAEAVAVETLS 63
Query: 131 ---------------------MEFSFGPKRWFPKESL---------------------PK 148
+ +G +R++ +E + PK
Sbjct: 64 PSPAAVAPECPHFGVCGGCDWQDLDYGAQRFWKREQVAETLARLAGLPDVPVAETVPSPK 123
Query: 149 RGDHIENYA--------LGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGL 200
++ LGLH +VL+I C L + VLA V+D R GL
Sbjct: 124 TYEYRNKMEFAFAGKLHLGLHERRRPGRVLDIATCRLMPPWVSQVLAFVRD--RCAATGL 181
Query: 201 SPYDVHSHSGFLKHLMLR 218
+ +D S G +HL+LR
Sbjct: 182 AAFDARSGKGVWRHLVLR 199
>gi|153955290|ref|YP_001396055.1| RNA methyltransferase [Clostridium kluyveri DSM 555]
gi|219855711|ref|YP_002472833.1| hypothetical protein CKR_2368 [Clostridium kluyveri NBRC 12016]
gi|146348148|gb|EDK34684.1| Predicted RNA methyltransferase [Clostridium kluyveri DSM 555]
gi|219569435|dbj|BAH07419.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 453
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 14/91 (15%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSFG + K G+ LG+H G ++N+D+C + + LVL V
Sbjct: 127 KMEFSFGDEE--------KDGE----LTLGMHVKGKGFSIVNVDECKIVDKDFTLVLDRV 174
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
Y+R ++ L Y V SH+G+L++L+LR G
Sbjct: 175 VKYFR--KMKLPYYRVRSHNGYLRNLVLRKG 203
>gi|399924483|ref|ZP_10781841.1| RNA methyltransferase [Peptoniphilus rhinitidis 1-13]
Length = 442
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 157 ALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLM 216
ALGLH F +++N +C + N + + V++Y+ + LG S Y+ +H GFL+HL+
Sbjct: 134 ALGLHVKNRFHEIINTSECNIVDSDFNKIRSEVRNYFEN--LGKSHYNRKTHLGFLRHLL 191
Query: 217 LRTGS 221
+R G+
Sbjct: 192 IRKGT 196
>gi|317127193|ref|YP_004093475.1| TrmA family RNA methyltransferase [Bacillus cellulosilyticus DSM
2522]
gi|315472141|gb|ADU28744.1| RNA methyltransferase, TrmA family [Bacillus cellulosilyticus DSM
2522]
Length = 457
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 84/212 (39%), Gaps = 68/212 (32%)
Query: 78 RGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYA-------- 129
+ +LE++ E L + G GV K+ GF + R LPGE+ ++T+ K +YA
Sbjct: 9 KNDKLEVIFEDLTHDGAGVAKI--NGFPIFVPRALPGEESTIKITKVKKNYAFGRLIETT 66
Query: 130 -EMEFSFGPKRWFPKE-------------SLPKRGDHIENY--------------ALGLH 161
E E P KE L + H+ + LG+
Sbjct: 67 KESEHRVEPPCPIFKECGGCQLQHLSYDGQLKHKQKHVMDVLSRIGGMNDVHVHPTLGME 126
Query: 162 AP--------------------GFF----DKVLNIDKCLLQSEPANLVLAAVQDYWRDPQ 197
P GF+ K++++D+C++Q E + V+ V+D + +
Sbjct: 127 EPWRYRNKAQVPFGEEEGGLVAGFYAERSHKIIDMDRCMIQQEENDEVVMLVKDIAK--K 184
Query: 198 LGLSPYDVHSHSGFLKHLMLR----TGSFMIC 225
G+ YD H G L+H++ R TG M+
Sbjct: 185 YGVRGYDEEKHKGTLRHVVTRYGKNTGELMVV 216
>gi|153809759|ref|ZP_01962427.1| hypothetical protein RUMOBE_00140 [Ruminococcus obeum ATCC 29174]
gi|149833937|gb|EDM89017.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ruminococcus obeum
ATCC 29174]
Length = 462
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 49/97 (50%), Gaps = 18/97 (18%)
Query: 126 GSYAEMEFSFGPKRWFPKESLPKRGDHIEN--YALGLHAPGFFDKVLNIDKCLLQSEPAN 183
G +MEFSFG D +++ +LGLH G +LN D C L +
Sbjct: 134 GYRNKMEFSFG--------------DEVKDGPLSLGLHKKGSTYDILNTDDCKLVHKDMT 179
Query: 184 LVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
+L V++++R+ G S Y H+G+L+HLMLR G
Sbjct: 180 DILTCVREFFREK--GASYYRKLQHTGYLRHLMLRRG 214
>gi|307566456|ref|ZP_07628890.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella amnii CRIS
21A-A]
gi|307344844|gb|EFN90247.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella amnii CRIS
21A-A]
Length = 476
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
Query: 130 EMEFSFGPKRWFPKESLPK--RGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLA 187
++EF KRW+ E L G + A+G H G FDK+ I KC L N +
Sbjct: 133 KLEFGCANKRWYTTEELKDIPNGIGLTEGAIGFHITGAFDKIYPIKKCWLMDNLQNDIRN 192
Query: 188 AVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMI 224
++ +Y + YD G L+ +M+R TG +M+
Sbjct: 193 SIYNYALKNKFTF--YDTREQHGLLRSIMIRNSNTGEWMV 230
>gi|149181899|ref|ZP_01860387.1| RNA methyltransferase [Bacillus sp. SG-1]
gi|148850338|gb|EDL64500.1| RNA methyltransferase [Bacillus sp. SG-1]
Length = 398
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 25/100 (25%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEF+F P + +LGLH G F KV++++ CL+ SE +V A+
Sbjct: 138 KMEFTFAP-----------------DGSLGLHEQGNFRKVISLETCLIASE--EMVETAM 178
Query: 190 Q-DYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMI 224
+ W + GL YD +H G L+HLM+R TG M+
Sbjct: 179 EVANWVNAH-GLKGYDKDAHEGLLRHLMVRQSFATGEIML 217
>gi|407795900|ref|ZP_11142857.1| RNA methyltransferase [Salimicrobium sp. MJ3]
gi|407019720|gb|EKE32435.1| RNA methyltransferase [Salimicrobium sp. MJ3]
Length = 458
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 39/63 (61%), Gaps = 6/63 (9%)
Query: 164 GFFDK----VLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRT 219
GF+ K +++++ CL+Q E + ++AAV+ D LG+ YD SH G L+H+M+RT
Sbjct: 151 GFYQKRSHNIIDMESCLIQDETNDGMVAAVRRIATD--LGIEAYDEESHRGVLRHIMVRT 208
Query: 220 GSF 222
G
Sbjct: 209 GQV 211
>gi|299143365|ref|ZP_07036445.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus sp. oral
taxon 386 str. F0131]
gi|298517850|gb|EFI41589.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus sp. oral
taxon 386 str. F0131]
Length = 444
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 157 ALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLM 216
+LGLH F +V+N D+C + +E N++ +Y++D L PY+ H+G L+HL+
Sbjct: 137 SLGLHKKNRFYEVVNTDECNIVNEDFNIIRKFTLEYFKDK---LKPYNRMRHTGILRHLL 193
Query: 217 LRTGSF 222
+R S
Sbjct: 194 IRRSSI 199
>gi|255282151|ref|ZP_05346706.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bryantella
formatexigens DSM 14469]
gi|255267099|gb|EET60304.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Marvinbryantia
formatexigens DSM 14469]
Length = 533
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/125 (31%), Positives = 59/125 (47%), Gaps = 22/125 (17%)
Query: 107 LCDRVLPGEKFIGRVT--RKKGSYAEMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPG 164
L D V P F G + + G +MEFSFG + + ALG+H G
Sbjct: 103 LLDEVCPEYVFEGILGSPEQSGYRNKMEFSFGDEYFGGP------------LALGMHKRG 150
Query: 165 FFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSP-YDVHSHSGFLKHLMLR----T 219
F ++ + C + E +LA V DY+R+ Q +P Y H+G+L+HL++R T
Sbjct: 151 SFYDIVTVSGCRIVDEDFRRILACVLDYFRETQ---TPFYHKLRHTGYLRHLLVRKAKKT 207
Query: 220 GSFMI 224
G +I
Sbjct: 208 GEILI 212
>gi|307108166|gb|EFN56407.1| hypothetical protein CHLNCDRAFT_22531, partial [Chlorella
variabilis]
Length = 486
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 42/76 (55%), Gaps = 7/76 (9%)
Query: 147 PKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVH 206
P+RG LGL PG VL I +C LQ + AN +L V R Q GL P+D
Sbjct: 172 PERG-----LVLGLKLPGSNTAVLPIGRCDLQPDAANQLLQRVLQLCR--QHGLQPHDPA 224
Query: 207 SHSGFLKHLMLRTGSF 222
+ SG L+H+++R G+F
Sbjct: 225 ARSGLLQHVVIRRGTF 240
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 92 KGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAE 130
K +G+C++ + GFV+ DR LPGE+ RV + K S+A+
Sbjct: 4 KLQGICRLPN-GFVLFVDRALPGERLTARVVQSKRSFAK 41
>gi|260590015|ref|ZP_05855928.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Blautia hansenii DSM
20583]
gi|260539527|gb|EEX20096.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Blautia hansenii DSM
20583]
Length = 462
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 45/92 (48%), Gaps = 14/92 (15%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSFG K K G +LGLH G VLN C L E +L +
Sbjct: 138 KMEFSFGDKY--------KDGP----LSLGLHKKGSTYDVLNACDCKLVHEDMTKILTCI 185
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+Y R+ G S Y H+GFL+HL+LR G+
Sbjct: 186 LEYCREE--GFSYYHKMQHTGFLRHLLLRRGN 215
>gi|317488920|ref|ZP_07947450.1| hypothetical protein HMPREF1023_01149 [Eggerthella sp. 1_3_56FAA]
gi|316911994|gb|EFV33573.1| hypothetical protein HMPREF1023_01149 [Eggerthella sp. 1_3_56FAA]
Length = 405
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 12/108 (11%)
Query: 113 PGEKFIGRVTRKKGSYAEMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNI 172
PG K G + G + KR P+R YA G H +++
Sbjct: 51 PGRKLQGSANARAGKGRDARGGRDGKRA----QKPRREILCGMYAAGSH------RIVPT 100
Query: 173 DKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
D CL+++E A ++ V+D P+ GL PY S +GFL+H ++R G
Sbjct: 101 DGCLIENEEAKRIIRTVRDLM--PRFGLEPYREDSGTGFLRHAVVRVG 146
>gi|288800143|ref|ZP_06405602.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella sp. oral
taxon 299 str. F0039]
gi|288333391|gb|EFC71870.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella sp. oral
taxon 299 str. F0039]
Length = 473
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF KRW +E + + A+G H G FDK+ I +C L + N + +
Sbjct: 133 KLEFGCSNKRWLTQEDIDSKKTFDNMNAIGFHITGAFDKIYPITQCQLMDDLQNQIRNHI 192
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+Y + +S YD+ + G L+ +M+R +
Sbjct: 193 YEYA--IKQNISFYDLRNQHGLLRSIMVRNSN 222
>gi|347752051|ref|YP_004859616.1| TrmA family RNA methyltransferase [Bacillus coagulans 36D1]
gi|347584569|gb|AEP00836.1| RNA methyltransferase, TrmA family [Bacillus coagulans 36D1]
Length = 457
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 85/213 (39%), Gaps = 70/213 (32%)
Query: 78 RGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYA-----EME 132
+ +E+E+V E L + G GV KV G+ + LPGEK +V + +Y E+
Sbjct: 9 KNEEIEVVFEDLTHDGAGVAKV--DGYPLFVKNGLPGEKARIKVIKANKNYGIGRLLEL- 65
Query: 133 FSFGPKRW-FPKESLPKRGD----HI---------ENYA------------------LGL 160
+ P R PKE PK G HI EN +G+
Sbjct: 66 YERSPYRVDIPKEDAPKYGGCQLAHIRYDGQLMYKENQVRQALARIGKIEGARIHPMIGM 125
Query: 161 HAP--------------------GFFD----KVLNIDKCLLQSEPANLVLAAVQDYWRDP 196
P GFF ++L+ D+ ++Q N + V++ R
Sbjct: 126 DNPWHYRNKAQVPVGEKNGKLVAGFFKPRTHEILDADESVIQLPAVNEAVQVVKEICR-- 183
Query: 197 QLGLSPYDVHSHSGFLKHLMLR----TGSFMIC 225
+LG+ YD HSG L+H+M+R TG M+
Sbjct: 184 ELGIPAYDEEHHSGVLRHIMVRYGRKTGELMVV 216
>gi|281420423|ref|ZP_06251422.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella copri DSM
18205]
gi|281405568|gb|EFB36248.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella copri DSM
18205]
Length = 483
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 52/110 (47%), Gaps = 18/110 (16%)
Query: 130 EMEFSFGPKRWFPKESL---PKRGD---------HIENYALGLHAPGFFDKVLNIDKCLL 177
++EF KRWF E L P++ D H +N A+G H G FDK+ I KC L
Sbjct: 133 KIEFGCSNKRWFTAEELAQLPQKEDDTVTSLKERHAQN-AIGFHITGAFDKIYPIRKCWL 191
Query: 178 QSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMI 224
+ N + V +Y YD+ G L+++M+R TG +M+
Sbjct: 192 MDDLCNEIRNFVFEYADSHDYTF--YDLREQHGLLRNMMIRNSNTGEWML 239
>gi|325832711|ref|ZP_08165474.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eggerthella sp. HGA1]
gi|325485850|gb|EGC88311.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eggerthella sp. HGA1]
Length = 525
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 12/108 (11%)
Query: 113 PGEKFIGRVTRKKGSYAEMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNI 172
PG K G + G + KR P+R YA G H +++
Sbjct: 84 PGRKLQGSANARAGKGRDARGGRDGKRA----QKPRREILCGMYAAGSH------RIVPT 133
Query: 173 DKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
D CL+++E A ++ V+D P+ G+ PY S +GFL+H ++R G
Sbjct: 134 DGCLIENEEAKRIIRTVRDLM--PRFGIEPYREDSGTGFLRHAVVRVG 179
>gi|257792631|ref|YP_003183237.1| TrmA family RNA methyltransferase [Eggerthella lenta DSM 2243]
gi|257476528|gb|ACV56848.1| RNA methyltransferase, TrmA family [Eggerthella lenta DSM 2243]
Length = 438
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 12/108 (11%)
Query: 113 PGEKFIGRVTRKKGSYAEMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNI 172
PG K G + G + KR P+R YA G H +++
Sbjct: 84 PGRKLQGSANARAGKGRDARGGRDGKRA----QKPRREILCGMYAAGSH------RIVPT 133
Query: 173 DKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
D CL+++E A ++ V+D P+ G+ PY S +GFL+H ++R G
Sbjct: 134 DGCLIENEEAKRIIRTVRDLM--PRFGIEPYREDSGTGFLRHAVVRVG 179
>gi|304439171|ref|ZP_07399089.1| 23S rRNA (uracil-5-)-methyltransferase [Peptoniphilus duerdenii
ATCC BAA-1640]
gi|304372303|gb|EFM25891.1| 23S rRNA (uracil-5-)-methyltransferase [Peptoniphilus duerdenii
ATCC BAA-1640]
Length = 532
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 42/71 (59%), Gaps = 7/71 (9%)
Query: 157 ALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLM 216
ALGLH G+F +V+++DKCL+ + V ++Y++ G S Y+ +H G L+HL
Sbjct: 135 ALGLHKKGYFHEVVDMDKCLIVHPDFDKVRIKTREYFQ----GTSFYNRKTHEGVLRHLS 190
Query: 217 LR---TGSFMI 224
LR +G +I
Sbjct: 191 LRRTISGEMLI 201
>gi|168186646|ref|ZP_02621281.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
C str. Eklund]
gi|169295463|gb|EDS77596.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
C str. Eklund]
Length = 450
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 14/91 (15%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEF+FG + K G+ LG+HA G +++ D C + NL+L V
Sbjct: 127 KMEFTFG--------DMEKGGE----LTLGMHAQGKSFGIISADVCKIVDSDFNLILKTV 174
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
+Y+R GL Y + SH G+L++L++R G
Sbjct: 175 LEYFRAQ--GLPHYRIMSHEGYLRNLVIRKG 203
>gi|295109231|emb|CBL23184.1| 23S rRNA m(5)U-1939 methyltransferase [Ruminococcus obeum A2-162]
Length = 462
Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 48/95 (50%), Gaps = 14/95 (14%)
Query: 126 GSYAEMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLV 185
G +MEFSFG + K G +LGLH G +LN D C L + +
Sbjct: 134 GYRNKMEFSFGDEY--------KDGP----LSLGLHKKGSTYDILNTDDCKLVHKDMTDI 181
Query: 186 LAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
L V++++R+ G S Y H+G+L+HLMLR G
Sbjct: 182 LICVREFFREK--GASYYRKLQHTGYLRHLMLRRG 214
>gi|406928316|gb|EKD64141.1| hypothetical protein ACD_51C00065G0010 [uncultured bacterium]
Length = 488
Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 52/99 (52%), Gaps = 17/99 (17%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSFG + KE R LGLH G + ++++C LQSE ++ +LA V
Sbjct: 155 KMEFSFGNE---SKEDTELR--------LGLHPAGRHVDIFDVEECFLQSEKSSEILARV 203
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMI 224
+D+ R LS Y+ +++G L L +R TG M+
Sbjct: 204 RDFARKNN--LSFYNSATNAGLLSSLYIRDGKNTGEIMV 240
>gi|118444301|ref|YP_878485.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium novyi NT]
gi|118134757|gb|ABK61801.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium novyi NT]
Length = 450
Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 14/91 (15%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEF+FG + K G+ LG+HA G +++ D C + NL+L V
Sbjct: 127 KMEFTFG--------DMEKGGE----LTLGMHAQGKSFGIISADVCKIVDSDFNLILKTV 174
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
+Y+R GL Y + SH G+L++L++R G
Sbjct: 175 LEYFRAQ--GLPHYRIMSHEGYLRNLVIRKG 203
>gi|429767350|ref|ZP_19299550.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium celatum
DSM 1785]
gi|429181058|gb|EKY22249.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium celatum
DSM 1785]
Length = 455
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEF+FG L K G+ LG+H G VL +D C++ E VL
Sbjct: 127 KMEFTFG--------DLEKGGE----LTLGMHMKGKSFGVLTVDNCMIVDEDFRTVLKTT 174
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMI 224
+Y+R + GL Y V G+L+HL++R TG M+
Sbjct: 175 VEYFR--KTGLPYYRVMRREGYLRHLVIRKATNTGELMV 211
>gi|253681845|ref|ZP_04862642.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
botulinum D str. 1873]
gi|253561557|gb|EES91009.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
botulinum D str. 1873]
Length = 450
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 49/91 (53%), Gaps = 14/91 (15%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEF+FG + K G+ LG+HA G +++ D+C + NL+L V
Sbjct: 127 KMEFTFG--------DMEKGGE----LTLGMHAQGKSFGIISADECKIVDSDFNLILKTV 174
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
+Y+R + L Y + SH G+L++L++R G
Sbjct: 175 LEYFRGKE--LPHYRIMSHEGYLRNLVIRKG 203
>gi|416356062|ref|ZP_11681924.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
C str. Stockholm]
gi|338195101|gb|EGO87432.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
C str. Stockholm]
Length = 400
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 6/89 (6%)
Query: 132 EFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQD 191
EF + K F + K G+ LG+HA G +++ D+C + NL+L V +
Sbjct: 71 EFEYRNKMEFTFGDMEKGGE----LTLGMHAQGKSFGIISADECKIVDSDFNLILKTVLE 126
Query: 192 YWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
Y+R + L Y + SH G+L++L++R G
Sbjct: 127 YFRGKE--LPHYRIMSHEGYLRNLVIRKG 153
>gi|336115310|ref|YP_004570077.1| TrmA family RNA methyltransferase [Bacillus coagulans 2-6]
gi|335368740|gb|AEH54691.1| RNA methyltransferase, TrmA family [Bacillus coagulans 2-6]
Length = 457
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 84/213 (39%), Gaps = 70/213 (32%)
Query: 78 RGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYA-----EME 132
+ +E+E V E L + G GV KV G+ + LPGEK +V + +Y E+
Sbjct: 9 KNEEIEAVFEDLTHDGAGVAKV--DGYPLFVKNGLPGEKARIKVIKANKNYGIGRLLEL- 65
Query: 133 FSFGPKRW-FPKESLPKRGD----HI---------ENYA------------------LGL 160
+ P R PKE PK G HI EN +G+
Sbjct: 66 YERSPYRVDIPKEDAPKYGGCQLAHIRYDGQLMYKENQVRQALARIGKIEGARIHPMIGM 125
Query: 161 HAP--------------------GFFD----KVLNIDKCLLQSEPANLVLAAVQDYWRDP 196
P GFF ++L+ D+ ++Q N + V++ R
Sbjct: 126 DNPWHYRNKAQVPVGEKNGKLVAGFFKPRTHEILDADESVIQLPAVNEAVQVVKEICR-- 183
Query: 197 QLGLSPYDVHSHSGFLKHLMLR----TGSFMIC 225
+LG+ YD HSG L+H+M+R TG M+
Sbjct: 184 ELGIPAYDEEHHSGVLRHIMVRYGRKTGELMVV 216
>gi|289578782|ref|YP_003477409.1| TrmA family RNA methyltransferase [Thermoanaerobacter italicus Ab9]
gi|289528495|gb|ADD02847.1| RNA methyltransferase, TrmA family [Thermoanaerobacter italicus
Ab9]
Length = 450
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 51/108 (47%), Gaps = 17/108 (15%)
Query: 116 KFIGRVT--RKKGSYAEMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNID 173
KF+G V ++ G +ME++FG D N ALGLH G F +V+ D
Sbjct: 111 KFLGIVKSPKEHGYRNKMEYTFGK-------------DKEGNAALGLHRKGRFYEVIMTD 157
Query: 174 KCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
KC + L DY + +L YD +H GFL+HL++R S
Sbjct: 158 KCNIVDGDFIKALTLTFDYAINKRLPF--YDKKTHEGFLRHLVVRKAS 203
>gi|345018081|ref|YP_004820434.1| TRAM domain-containing protein [Thermoanaerobacter wiegelii Rt8.B1]
gi|344033424|gb|AEM79150.1| deoxyribonuclease/rho motif-related TRAM [Thermoanaerobacter
wiegelii Rt8.B1]
Length = 391
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 53/108 (49%), Gaps = 17/108 (15%)
Query: 116 KFIGRVT--RKKGSYAEMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNID 173
+F+G V ++ G +ME++FG K G N ALGLH G F +V+ D
Sbjct: 111 EFLGIVKSPKEHGYRNKMEYTFGK---------DKEG----NAALGLHRKGRFYEVIMTD 157
Query: 174 KCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
KC + + L DY + GL YD +H GFL+HL++R S
Sbjct: 158 KCNIVEDDFLKALNLTFDYA--IKKGLPFYDKKTHEGFLRHLVVRKAS 203
>gi|300727266|ref|ZP_07060682.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella bryantii
B14]
gi|299775504|gb|EFI72098.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella bryantii
B14]
Length = 484
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 12/105 (11%)
Query: 130 EMEFSFGPKRWFPKESL----PKRGDH---IENYALGLHAPGFFDKVLNIDKCLLQSEPA 182
++EF KRW+ KE + PK+ + A+G H G FDK+ I+KC L
Sbjct: 138 KLEFGCANKRWYTKEEIAALPPKQEGETGSLTEGAIGFHITGAFDKIYPINKCWLMDNLN 197
Query: 183 NLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMI 224
N + + Y +S Y++ G L+ +M R TG +M+
Sbjct: 198 NEIRNEIGQYATSHD--ISYYNIREQHGLLRDIMFRNSNTGEWMV 240
>gi|331084332|ref|ZP_08333436.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
bacterium 6_1_63FAA]
gi|330401596|gb|EGG81177.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
bacterium 6_1_63FAA]
Length = 472
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 45/92 (48%), Gaps = 14/92 (15%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSFG + K G +LGLH G VLN C L E +L +
Sbjct: 138 KMEFSFGDEY--------KDGP----LSLGLHKKGSTYDVLNACDCKLVHEDMTKILTCI 185
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+Y R+ G S Y H+GFL+HL+LR G+
Sbjct: 186 LEYCREE--GFSYYHKMQHTGFLRHLLLRRGN 215
>gi|363891095|ref|ZP_09318378.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacteriaceae
bacterium CM5]
gi|361962062|gb|EHL15211.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacteriaceae
bacterium CM5]
Length = 451
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 47/91 (51%), Gaps = 14/91 (15%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEF+FG + K GD + +GLH ++N++ C + E +L
Sbjct: 128 KMEFTFGNEE--------KDGDLL----IGLHRKNSSMSIVNVEDCKIIDEDYRKILKTT 175
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
+Y+R + GL Y + SH G+L+HL++R G
Sbjct: 176 GEYFR--KQGLPHYHIMSHEGYLRHLVIRKG 204
>gi|325836777|ref|ZP_08166244.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Turicibacter sp. HGF1]
gi|325491155|gb|EGC93444.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Turicibacter sp. HGF1]
Length = 459
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 84/204 (41%), Gaps = 64/204 (31%)
Query: 77 IRGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAEME---- 132
++ + ++ ESL + G GV K+ GF + L GE+ +VT K +YA
Sbjct: 9 VKNEYYDVKIESLTHDGLGVAKI--DGFPIFVTNALVGEEVNMKVTLVKKTYAIGRAVDL 66
Query: 133 FSFGPKRWFPKESLPK----------------------------RGDHIENY----ALGL 160
F P R P + K R HIE+ +G+
Sbjct: 67 FVESPDRVTPPCKIYKQCGGCQVQHLNYPGQLQMKYDTVVNQFKRIGHIEDANILPTIGM 126
Query: 161 HAP--------------------GFFDK----VLNIDKCLLQSEPANLVLAAVQDYWRDP 196
P GF+ K ++++ CL+Q+E ++ ++ ++ RD
Sbjct: 127 EEPWRYRNKTQVPFGLANGDVVAGFYQKRSHEIIDMRHCLIQTEISDEIIHEMRGICRD- 185
Query: 197 QLGLSPYDVHSHSGFLKHLMLRTG 220
L LSPY+ S++G L+H+++RTG
Sbjct: 186 -LKLSPYNEESNTGILRHVIVRTG 208
>gi|302875488|ref|YP_003844121.1| RNA methyltransferase, TrmA family [Clostridium cellulovorans 743B]
gi|307687940|ref|ZP_07630386.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
cellulovorans 743B]
gi|302578345|gb|ADL52357.1| RNA methyltransferase, TrmA family [Clostridium cellulovorans 743B]
Length = 455
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 14/91 (15%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEF+FG + K G+ LGLHA G +L +D+C L E +L
Sbjct: 129 KMEFTFG--------DMEKGGE----ITLGLHARGMSFGILTVDQCYLVEEDYRTILKET 176
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
+Y ++ G Y V S GF+++L++R G
Sbjct: 177 LEYVKEK--GFPKYRVMSREGFMRNLIIRQG 205
>gi|403381649|ref|ZP_10923706.1| TrmA family RNA methyltransferase, partial [Paenibacillus sp. JC66]
Length = 362
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 43/69 (62%), Gaps = 10/69 (14%)
Query: 164 GFFDK----VLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR- 218
GFF K +++++ CL+Q E + V+AAV+ RD LG++ YD +H G L+H++++
Sbjct: 53 GFFAKGSHRIVDMESCLIQHENNDEVVAAVKGIARD--LGITAYDEATHRGVLRHVVVKY 110
Query: 219 ---TGSFMI 224
TG MI
Sbjct: 111 GFATGEIMI 119
>gi|336437235|ref|ZP_08616942.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
bacterium 1_4_56FAA]
gi|336005972|gb|EGN36014.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
bacterium 1_4_56FAA]
Length = 460
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 46/95 (48%), Gaps = 14/95 (14%)
Query: 126 GSYAEMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLV 185
G +MEFSFG + K G +LGLH G +L C L E +
Sbjct: 128 GYRNKMEFSFGDEY--------KDGP----LSLGLHKKGSTYDILTASDCKLVHEDMTKI 175
Query: 186 LAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
L V +Y+R +LG S Y H+G+L+HL+LR G
Sbjct: 176 LTCVLEYFR--KLGASHYRKMQHTGYLRHLLLRRG 208
>gi|307244221|ref|ZP_07526336.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptostreptococcus
stomatis DSM 17678]
gi|306492371|gb|EFM64409.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptostreptococcus
stomatis DSM 17678]
Length = 544
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 6/61 (9%)
Query: 164 GFFDK----VLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRT 219
GF+ K +++IDKCL+Q E +L++ ++ Y + +S YD SH G L+H++ +
Sbjct: 145 GFYRKKSHDIIDIDKCLIQDEKNDLIIDIIRKYIEEE--NISIYDEKSHKGLLRHIVTKV 202
Query: 220 G 220
G
Sbjct: 203 G 203
>gi|363898141|ref|ZP_09324676.1| hypothetical protein HMPREF9624_01238 [Oribacterium sp. ACB7]
gi|361956508|gb|EHL09823.1| hypothetical protein HMPREF9624_01238 [Oribacterium sp. ACB7]
Length = 435
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 18/106 (16%)
Query: 123 RKKGSYAEMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPA 182
+K+ +MEFSFG + K G LGLH F +LN D C L S
Sbjct: 55 QKEAYRNKMEFSFGDQE--------KDGP----LCLGLHQKRSFFNILNTDDCRLPSPDM 102
Query: 183 NLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMI 224
+L ++Y+R+ G+S + H G+L+HL+LR TG ++
Sbjct: 103 GKILTVSRNYFREK--GISYFHKKRHEGYLRHLLLRRAEKTGEILV 146
>gi|397904320|ref|ZP_10505238.1| RNA methyltransferase, TrmA family [Caloramator australicus RC3]
gi|343179067|emb|CCC58137.1| RNA methyltransferase, TrmA family [Caloramator australicus RC3]
Length = 447
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 44/93 (47%), Gaps = 16/93 (17%)
Query: 126 GSYAEMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLV 185
G +MEF+FG D ALGLH G F +V+ D C + + N +
Sbjct: 122 GYRNKMEFTFG--------------DDEGKLALGLHKKGKFYEVITTDDCKIVHDDFNKI 167
Query: 186 LAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR 218
L A Y+ +L + Y +H GFL+HL+LR
Sbjct: 168 LDATLSYF--SKLNVPYYSKKTHEGFLRHLVLR 198
>gi|333372378|ref|ZP_08464307.1| 23S rRNA (uracil-5-)-methyltransferase [Desmospora sp. 8437]
gi|332974302|gb|EGK11234.1| 23S rRNA (uracil-5-)-methyltransferase [Desmospora sp. 8437]
Length = 465
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 77/202 (38%), Gaps = 64/202 (31%)
Query: 79 GQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYA----EMEFS 134
G+ + L ++ G GV K GF V + GE+ RV+R K +YA E
Sbjct: 11 GERITLPITGQSHTGDGVGKY--KGFTVFVPLTIAGEQVAARVSRVKKTYAHARLEEVLQ 68
Query: 135 FGPKR-------------------WFPKESLPKRGDHIENYA-------------LGLHA 162
P R +P + KR ++ +A LG+
Sbjct: 69 VSPHRVDPLCPVFAQCGGCQLQHIAYPAQLESKRRQVVDAFARIGGLEEVTILPVLGMEE 128
Query: 163 P--------------------GFF----DKVLNIDKCLLQSEPANLVLAAVQDYWRDPQL 198
P GF+ +++ D+CL+Q + + V+++ R+ L
Sbjct: 129 PWSYRNKAQVPVGGGKGKVEAGFYAAGSHQIIPFDRCLIQQPENDRTIQQVKEWIRE--L 186
Query: 199 GLSPYDVHSHSGFLKHLMLRTG 220
+ PYD H G L+H+M+RTG
Sbjct: 187 DIPPYDEKKHRGCLRHVMVRTG 208
>gi|393199259|ref|YP_006461101.1| SAM-dependent methyltransferase [Solibacillus silvestris StLB046]
gi|327438590|dbj|BAK14955.1| SAM-dependent methyltransferase [Solibacillus silvestris StLB046]
Length = 454
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%), Gaps = 8/67 (11%)
Query: 159 GLHAPGFFD----KVLNIDKCLLQSEPANLVLAAVQDYWRDPQ-LGLSPYDVHSHSGFLK 213
G GF+ ++++++CL+Q+ A++V+A D R+ + LGL PYD SH G L+
Sbjct: 142 GQMVAGFYKTKSHSIVDMERCLIQTGEADVVMA---DLKRELEILGLRPYDEKSHQGMLR 198
Query: 214 HLMLRTG 220
H+++R G
Sbjct: 199 HVVVRKG 205
>gi|404369919|ref|ZP_10975246.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp.
7_2_43FAA]
gi|226913952|gb|EEH99153.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp.
7_2_43FAA]
Length = 453
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 60/119 (50%), Gaps = 20/119 (16%)
Query: 112 LPGEKFIGRV-TRKKGSYA-EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKV 169
+P +++G V ++++ Y +MEF+FG K G+ LG+H G +
Sbjct: 107 IPMGEYLGVVGSKEQWEYRNKMEFTFG--------DFEKGGE----LTLGMHMKGKSFGI 154
Query: 170 LNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMI 224
+ +DKCL+ E V+ +Y++D + L Y V G+L+HL++R TG M+
Sbjct: 155 ITVDKCLIVDEDFKTVIRETVNYFKDKE--LPYYRVMKREGYLRHLVIRKAINTGELMV 211
>gi|241889868|ref|ZP_04777166.1| 23S rRNA-methyltransferase RumA [Gemella haemolysans ATCC 10379]
gi|241863490|gb|EER67874.1| 23S rRNA-methyltransferase RumA [Gemella haemolysans ATCC 10379]
Length = 446
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 158 LGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLML 217
+G + P D V+NI+KC +Q + N+++ ++ +L LS YD +SHSG ++H+M
Sbjct: 138 MGYYKPRSHD-VVNIEKCFIQYDEHNVLMNKLRSLI--SELNLSVYDENSHSGAIRHIMF 194
Query: 218 RTGSF 222
RT +
Sbjct: 195 RTNTL 199
>gi|331269931|ref|YP_004396423.1| TrmA family RNA methyltransferase [Clostridium botulinum BKT015925]
gi|329126481|gb|AEB76426.1| RNA methyltransferase, TrmA family [Clostridium botulinum
BKT015925]
Length = 450
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 14/91 (15%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEF+FG + K G+ LG+HA G +++ D+C + N++L V
Sbjct: 127 KMEFTFG--------DMEKGGE----LTLGMHAQGKSFGIISADECKIVDSDFNIILKTV 174
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
+Y+R L Y + SH G+L++L++R G
Sbjct: 175 LEYFRGKD--LPHYRIMSHEGYLRNLVIRKG 203
>gi|293375600|ref|ZP_06621874.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Turicibacter sanguinis
PC909]
gi|292645817|gb|EFF63853.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Turicibacter sanguinis
PC909]
Length = 459
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 84/204 (41%), Gaps = 64/204 (31%)
Query: 77 IRGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYA----EME 132
++ + ++ ESL + G GV K+ GF + L GE+ +VT K +YA
Sbjct: 9 VKNEYYDVKIESLTHDGLGVAKI--DGFPIFVTNALVGEEVNMKVTLVKKTYAIGCAVDL 66
Query: 133 FSFGPKRWFPKESLPK----------------------------RGDHIENY----ALGL 160
F P R P + K R HIE+ +G+
Sbjct: 67 FVESPDRVTPPCKIYKQCGGCQVQHLNYPGQLQMKYDTVVNQFKRIGHIEDANILPTIGM 126
Query: 161 HAP--------------------GFFDK----VLNIDKCLLQSEPANLVLAAVQDYWRDP 196
P GF+ K ++++ CL+Q+E ++ ++ ++ RD
Sbjct: 127 EEPWRYRNKTQVPFGLANGDVVAGFYQKRSHEIIDMRHCLIQTEISDEIIHEMRGICRD- 185
Query: 197 QLGLSPYDVHSHSGFLKHLMLRTG 220
L LSPY+ S++G L+H+++RTG
Sbjct: 186 -LKLSPYNEESNTGILRHVIVRTG 208
>gi|358066110|ref|ZP_09152644.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium hathewayi
WAL-18680]
gi|356695973|gb|EHI57598.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium hathewayi
WAL-18680]
Length = 481
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 7/93 (7%)
Query: 137 PKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDP 196
P R+ K P D G +A D + N D CLL E +L ++ Y +
Sbjct: 146 PWRYRNKAQFPFGKDRNGEIVTGFYAGRTHDIIENED-CLLGVESNRPILDKIKSYMK-- 202
Query: 197 QLGLSPYDVHSHSGFLKHLMLR----TGSFMIC 225
Q G+ PYD +H G ++H ++R TG M+C
Sbjct: 203 QCGVEPYDEETHRGLVRHALIRVGFKTGEIMVC 235
>gi|331085907|ref|ZP_08334990.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
bacterium 9_1_43BFAA]
gi|330406830|gb|EGG86335.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
bacterium 9_1_43BFAA]
Length = 458
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 45/91 (49%), Gaps = 14/91 (15%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSFG + K G +LGLH G VL C L E +L+ V
Sbjct: 131 KMEFSFGDEY--------KDG----PLSLGLHKKGSTYDVLTASDCKLVHEDMTQILSCV 178
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
DY+++ G+S Y H G+L+HL+LR G
Sbjct: 179 LDYFKER--GVSYYKKMQHIGYLRHLLLRRG 207
>gi|357054693|ref|ZP_09115774.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
clostridioforme 2_1_49FAA]
gi|355383997|gb|EHG31068.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
clostridioforme 2_1_49FAA]
Length = 502
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Query: 137 PKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDP 196
P R+ K P D N G +A G ++ + CLL E +L V+ + R
Sbjct: 124 PWRYRNKAQFPFGKDKDGNVIAGFYA-GRTHAIVEAEDCLLGVEENREILDIVKQFMR-- 180
Query: 197 QLGLSPYDVHSHSGFLKHLMLR----TGSFMIC 225
++ + PYD SH G ++H+++R TG M+C
Sbjct: 181 EMKIEPYDEISHKGLVRHVLIRKGFKTGEIMVC 213
>gi|325662109|ref|ZP_08150727.1| hypothetical protein HMPREF0490_01465 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325471558|gb|EGC74778.1| hypothetical protein HMPREF0490_01465 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 459
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 45/91 (49%), Gaps = 14/91 (15%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSFG + K G +LGLH G VL C L E +L+ V
Sbjct: 131 KMEFSFGDEY--------KDGP----LSLGLHKKGSTYDVLTASDCKLVHEDMTQILSCV 178
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
DY+++ G+S Y H G+L+HL+LR G
Sbjct: 179 LDYFKER--GVSYYKKMQHIGYLRHLLLRRG 207
>gi|335046107|ref|ZP_08539130.1| hypothetical protein HMPREF9124_2086 [Oribacterium sp. oral taxon
108 str. F0425]
gi|333759893|gb|EGL37450.1| hypothetical protein HMPREF9124_2086 [Oribacterium sp. oral taxon
108 str. F0425]
Length = 276
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 18/106 (16%)
Query: 123 RKKGSYAEMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPA 182
+K+ +MEFSFG + K G LGLH F +LN+D C L S
Sbjct: 57 QKEAYRNKMEFSFGDQE--------KDGP----LCLGLHQKRSFFNILNMDDCRLPSPDM 104
Query: 183 NLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMI 224
+L ++Y+R+ G+S + H G+L+HL++R TG ++
Sbjct: 105 GKILTVSRNYFREK--GISYFHKKRHEGYLRHLLIRRAEKTGEILV 148
>gi|405982666|ref|ZP_11040977.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Slackia piriformis YIT
12062]
gi|404389375|gb|EJZ84451.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Slackia piriformis YIT
12062]
Length = 434
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 40/65 (61%), Gaps = 8/65 (12%)
Query: 156 YALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHL 215
Y G H +V++ +CL++++ A ++ A++D P+ G++PYD + +GFL+H+
Sbjct: 118 YERGTH------RVIDSRECLIENQEAKRIILAIRDLM--PKFGIAPYDEDADTGFLRHV 169
Query: 216 MLRTG 220
+R G
Sbjct: 170 QVRVG 174
>gi|307244550|ref|ZP_07526655.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptostreptococcus
stomatis DSM 17678]
gi|306492077|gb|EFM64125.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptostreptococcus
stomatis DSM 17678]
Length = 455
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 157 ALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLM 216
+LG+H G F ++ +D C + E ++ +DY+ + GL Y +H G+L+HL+
Sbjct: 142 SLGMHKVGRFIDIVTVDDCRIIDEDFRKIMVGTRDYFEEK--GLPYYRTFNHQGYLRHLV 199
Query: 217 LRTGS 221
+R G
Sbjct: 200 VRRGE 204
>gi|297545003|ref|YP_003677305.1| TrmA family RNA methyltransferase [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|296842778|gb|ADH61294.1| RNA methyltransferase, TrmA family [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
Length = 450
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 51/108 (47%), Gaps = 17/108 (15%)
Query: 116 KFIGRVT--RKKGSYAEMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNID 173
KF+G V ++ G +ME++FG D N ALGLH G F +V+ D
Sbjct: 111 KFLGIVKSPKEHGYRNKMEYTFGK-------------DKEGNAALGLHRKGRFYEVIMTD 157
Query: 174 KCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
KC + L +Y + +L YD +H GFL+HL++R S
Sbjct: 158 KCNIVDGDFIKALTLTFEYAINKRLPF--YDKKTHEGFLRHLVVRKAS 203
>gi|355625493|ref|ZP_09048274.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp.
7_3_54FAA]
gi|354821317|gb|EHF05707.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp.
7_3_54FAA]
Length = 492
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Query: 137 PKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDP 196
P R+ K P G + EN + G ++ D CLL + +LAAV+
Sbjct: 158 PWRYRNKAQFP-FGMNKENEVIAGFYAGRTHCIIENDDCLLGIQENREILAAVKQIM--T 214
Query: 197 QLGLSPYDVHSHSGFLKHLML----RTGSFMIC 225
Q G+ PY SH+G ++H+++ RTG M+C
Sbjct: 215 QYGIKPYQEESHTGLIRHVLIRKGFRTGELMVC 247
>gi|289422275|ref|ZP_06424129.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptostreptococcus
anaerobius 653-L]
gi|289157326|gb|EFD05937.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptostreptococcus
anaerobius 653-L]
Length = 454
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 12/88 (13%)
Query: 137 PKRWFPKESLPKRGDHIENYALGLHAPGFFDK----VLNIDKCLLQSEPANLVLAAVQDY 192
P R+ K P R +EN G GF+ K ++++DKC++Q + ++ ++DY
Sbjct: 124 PFRYRNKAQFPVR---LEN---GKVKIGFYKKKSHDIIDVDKCVIQDVKNDEIIEIIRDY 177
Query: 193 WRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
+ + S YD SHSG L+H++ + G
Sbjct: 178 IAEENI--SIYDEKSHSGVLRHIVTKCG 203
>gi|323485341|ref|ZP_08090690.1| hypothetical protein HMPREF9474_02441 [Clostridium symbiosum
WAL-14163]
gi|323401377|gb|EGA93726.1| hypothetical protein HMPREF9474_02441 [Clostridium symbiosum
WAL-14163]
Length = 490
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Query: 137 PKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDP 196
P R+ K P G + EN + G ++ D CLL + +LAAV+
Sbjct: 156 PWRYRNKAQFP-FGMNKENEVIAGFYAGRTHCIIENDDCLLGIQENREILAAVKQIM--T 212
Query: 197 QLGLSPYDVHSHSGFLKHLML----RTGSFMIC 225
Q G+ PY SH+G ++H+++ RTG M+C
Sbjct: 213 QYGIKPYQEESHTGLIRHVLIRKGFRTGELMVC 245
>gi|229829260|ref|ZP_04455329.1| hypothetical protein GCWU000342_01347 [Shuttleworthia satelles DSM
14600]
gi|229792423|gb|EEP28537.1| hypothetical protein GCWU000342_01347 [Shuttleworthia satelles DSM
14600]
Length = 532
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 51/99 (51%), Gaps = 18/99 (18%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSFG + +G + ALG+H G F ++ +D+C + S+ +L
Sbjct: 142 KMEFSFGDQ---------TKGGQL---ALGMHKRGSFYDIVTVDQCRIISQDMRDLLRLT 189
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLML----RTGSFMI 224
D++ + +LG Y H G+L+HL++ RTG M+
Sbjct: 190 LDFFTERRLGF--YHKICHEGYLRHLLVRRAQRTGMLMV 226
>gi|407472955|ref|YP_006787355.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium acidurici
9a]
gi|407049463|gb|AFS77508.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium acidurici
9a]
Length = 454
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 16/92 (17%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEF+FG + K G+ ALG+H G F +++ +D C + E +L +
Sbjct: 128 KMEFTFG--------DVEKGGE----LALGMHEKGRFYEIVVVDDCKIVDEDFTSILTTI 175
Query: 190 QDYWRDPQLGLSP-YDVHSHSGFLKHLMLRTG 220
+Y+R+ + +P Y+ + H G L+HL++R
Sbjct: 176 LEYFREKK---TPFYNKNRHEGILRHLVVRKA 204
>gi|323694104|ref|ZP_08108283.1| hypothetical protein HMPREF9475_03146 [Clostridium symbiosum
WAL-14673]
gi|323501821|gb|EGB17704.1| hypothetical protein HMPREF9475_03146 [Clostridium symbiosum
WAL-14673]
Length = 488
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Query: 137 PKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDP 196
P R+ K P G + EN + G ++ D CLL + +LAAV+
Sbjct: 158 PWRYRNKAQFP-FGMNKENEVIAGFYAGRTHCIIENDDCLLGIQENREILAAVKQIM--T 214
Query: 197 QLGLSPYDVHSHSGFLKHLML----RTGSFMIC 225
Q G+ PY SH+G ++H+++ RTG M+C
Sbjct: 215 QYGIKPYQEESHTGLIRHVLIRKGFRTGELMVC 247
>gi|226323301|ref|ZP_03798819.1| hypothetical protein COPCOM_01073 [Coprococcus comes ATCC 27758]
gi|225208491|gb|EEG90845.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Coprococcus comes ATCC
27758]
Length = 455
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 18/99 (18%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSFG + K G ALG+H G F ++N+ +C + E ++ AV
Sbjct: 129 KMEFSFGDEY--------KDG----PLALGMHKRGSFHDIVNVTECKIVDEDFRRIIKAV 176
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLM----LRTGSFMI 224
++ D GL Y H+GF +HL+ +RTG +I
Sbjct: 177 LEFATDT--GLPYYHRMRHTGFFRHLLVRKAVRTGEILI 213
>gi|239628824|ref|ZP_04671855.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239518970|gb|EEQ58836.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 475
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 7/124 (5%)
Query: 109 DRVLPGEKFIGRVTRKKGSYAEMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDK 168
++VL IG+ R + + P R+ K P + G +A D
Sbjct: 96 NKVLNNLMRIGKFKRDEIKMLPIMGMENPWRYRNKAQFPFGRNKDGEIIAGFYAGRTHDI 155
Query: 169 VLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMI 224
+ N D CLL E +L ++ + ++ GL PYD ++H G ++H+++R TG M+
Sbjct: 156 IGN-DDCLLGVEENQEILGIIKGFMKEN--GLEPYDENAHKGLVRHVLIRKGFKTGELMV 212
Query: 225 CAPV 228
C V
Sbjct: 213 CLVV 216
>gi|429729312|ref|ZP_19263981.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptostreptococcus
anaerobius VPI 4330]
gi|429144459|gb|EKX87571.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptostreptococcus
anaerobius VPI 4330]
Length = 454
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 12/88 (13%)
Query: 137 PKRWFPKESLPKRGDHIENYALGLHAPGFFDK----VLNIDKCLLQSEPANLVLAAVQDY 192
P R+ K P R +EN G GF+ K ++++DKC++Q + ++ ++DY
Sbjct: 124 PFRYRNKAQFPVR---LEN---GKVKIGFYKKKSHDIIDVDKCVIQDVKNDEIIEIIRDY 177
Query: 193 WRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
+ + S YD SHSG L+H++ + G
Sbjct: 178 IAEENI--SIYDEKSHSGVLRHIVTKCG 203
>gi|363895613|ref|ZP_09322608.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacteriaceae
bacterium ACC19a]
gi|361957365|gb|EHL10675.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacteriaceae
bacterium ACC19a]
Length = 453
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 14/91 (15%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEF+FG + K GD + +GLH +++++ C + E +L
Sbjct: 128 KMEFTFGNEE--------KDGDLL----IGLHRKNSSMSIVDVEDCKIIDEDYRKILKTT 175
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
+Y+R + GL Y + SH G+L+HL++R G
Sbjct: 176 GEYFR--KQGLPHYHIMSHEGYLRHLVIRKG 204
>gi|363892557|ref|ZP_09319722.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacteriaceae
bacterium CM2]
gi|361963952|gb|EHL17015.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacteriaceae
bacterium CM2]
Length = 451
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 14/91 (15%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEF+FG + K GD + +GLH +++++ C + E +L
Sbjct: 128 KMEFTFGNEE--------KDGDLL----IGLHRKNSSMSIVDVEDCKIIDEDYRKILKTT 175
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
+Y+R + GL Y + SH G+L+HL++R G
Sbjct: 176 GEYFR--KQGLPHYHIMSHEGYLRHLVIRKG 204
>gi|326391400|ref|ZP_08212937.1| RNA methyltransferase, TrmA family [Thermoanaerobacter ethanolicus
JW 200]
gi|325992535|gb|EGD50990.1| RNA methyltransferase, TrmA family [Thermoanaerobacter ethanolicus
JW 200]
Length = 450
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 51/108 (47%), Gaps = 17/108 (15%)
Query: 116 KFIGRVT--RKKGSYAEMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNID 173
+F+G V ++ G +ME++FG D N ALGLH G F +V+ D
Sbjct: 111 EFLGIVKSPKEHGYRNKMEYTFGK-------------DKEGNAALGLHRKGRFYEVIMTD 157
Query: 174 KCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
KC + + L DY + L YD +H GFL+HL++R S
Sbjct: 158 KCNIVEDDFLKALNLTFDYA--IKKALPFYDKKTHEGFLRHLVVRKAS 203
>gi|345022305|ref|ZP_08785918.1| TrmA family RNA methyltransferase [Ornithinibacillus scapharcae
TW25]
Length = 466
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 158 LGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLML 217
LGLH G F K+++++ CL+ + V D+ + + LS YD +H G L+HLM+
Sbjct: 149 LGLHELGNFRKIISLETCLIAGKEMVEATMEVADWAK--KHNLSGYDKDTHEGLLRHLMV 206
Query: 218 R----TGSFMI 224
R TG M+
Sbjct: 207 RQSFETGEIML 217
>gi|167037122|ref|YP_001664700.1| RNA methyltransferase [Thermoanaerobacter pseudethanolicus ATCC
33223]
gi|320115540|ref|YP_004185699.1| TrmA family RNA methyltransferase [Thermoanaerobacter brockii
subsp. finnii Ako-1]
gi|166855956|gb|ABY94364.1| RNA methyltransferase, TrmA family [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|319928631|gb|ADV79316.1| RNA methyltransferase, TrmA family [Thermoanaerobacter brockii
subsp. finnii Ako-1]
Length = 450
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 52/108 (48%), Gaps = 17/108 (15%)
Query: 116 KFIGRVT--RKKGSYAEMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNID 173
+F+G V ++ G +ME++FG K G N LGLH G F +V+ D
Sbjct: 111 EFLGIVKSPKEHGYRNKMEYTFGK---------DKEG----NEVLGLHRKGRFYEVVMTD 157
Query: 174 KCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
KC + + L DY + GL YD +H GFL+HL++R S
Sbjct: 158 KCNIVDDDFLKALNLTFDYA--IKKGLPFYDKKTHKGFLRHLVVRKAS 203
>gi|406666101|ref|ZP_11073870.1| 23S rRNA (uracil-C(5))-methyltransferase RlmCD [Bacillus isronensis
B3W22]
gi|405385958|gb|EKB45388.1| 23S rRNA (uracil-C(5))-methyltransferase RlmCD [Bacillus isronensis
B3W22]
Length = 456
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 42/67 (62%), Gaps = 8/67 (11%)
Query: 159 GLHAPGFFD----KVLNIDKCLLQSEPANLVLAAVQDYWRDPQ-LGLSPYDVHSHSGFLK 213
G GF+ ++++++CL+Q+ A++V+A D R+ + LG+ PYD SH G L+
Sbjct: 144 GQMVAGFYKTKSHSIVDMERCLIQTGEADVVMA---DLKRELEILGVRPYDEKSHQGMLR 200
Query: 214 HLMLRTG 220
H+++R G
Sbjct: 201 HVVVRKG 207
>gi|331090275|ref|ZP_08339162.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
bacterium 3_1_46FAA]
gi|330401894|gb|EGG81469.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
bacterium 3_1_46FAA]
Length = 459
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 10/111 (9%)
Query: 119 GRVTRKKGSYAEMEFSFGPKRWFPKESLPKR------GDHIEN--YALGLHAPGFFDKVL 170
G++ R + E+ F + PKE + GD ++ +LGLH G VL
Sbjct: 102 GQIRRIMDEAVDGEYLFEGVKASPKEFAYRNKMEFSFGDEYKDGPLSLGLHKKGSTYDVL 161
Query: 171 NIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
C L E N +L V +Y+++ + +S Y H G+L+HL+LR G
Sbjct: 162 TASDCKLVHEDMNKILVCVLEYFKERK--VSYYKKMQHVGYLRHLLLRRGD 210
>gi|325262190|ref|ZP_08128928.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. D5]
gi|324033644|gb|EGB94921.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. D5]
Length = 471
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 44/91 (48%), Gaps = 14/91 (15%)
Query: 131 MEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQ 190
MEFSFG + K G +LGLH G VL C+L E N +L V
Sbjct: 131 MEFSFGDEY--------KDGP----LSLGLHKKGSTYDVLTAGDCMLVHEDMNKILLCVL 178
Query: 191 DYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+Y+++ +G Y H G+L+HL+LR G
Sbjct: 179 EYFKERNVGY--YRKLQHVGYLRHLLLRRGD 207
>gi|153814681|ref|ZP_01967349.1| hypothetical protein RUMTOR_00896 [Ruminococcus torques ATCC 27756]
gi|145848175|gb|EDK25093.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ruminococcus torques
ATCC 27756]
Length = 458
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 53/118 (44%), Gaps = 17/118 (14%)
Query: 107 LCDRVLPGEKFIGRVTRKKGSYA---EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAP 163
+ D + GE V +A +MEFSFG + K G +LGLH
Sbjct: 107 IMDEAVDGEYLFEGVKASPKEFAYRNKMEFSFGDEY--------KDG----PLSLGLHKK 154
Query: 164 GFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
G VL C L E N +L V +Y+++ + +S Y H G+L+HL+LR G
Sbjct: 155 GSTYDVLTASDCKLVHEDMNKILVCVLEYFKERK--VSYYKKMQHVGYLRHLLLRRGD 210
>gi|222528478|ref|YP_002572360.1| TrmA family RNA methyltransferase [Caldicellulosiruptor bescii DSM
6725]
gi|222455325|gb|ACM59587.1| RNA methyltransferase, TrmA family [Caldicellulosiruptor bescii DSM
6725]
Length = 451
Score = 46.6 bits (109), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 7/103 (6%)
Query: 118 IGRVTRKKGSYAEMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLL 177
IG++T K ME P R+ K +LP GD+ + +G + D +++ID CL+
Sbjct: 106 IGKLTPKINDVIGME---NPFRYRNKTALPVGGDY-KKPQIGFYKKMTHD-IVDIDYCLI 160
Query: 178 QSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
Q E + V+ ++D R ++ + YD H G L+H+++R
Sbjct: 161 QHEFCDNVIKGMKDLIRKHKIEV--YDEKKHKGVLRHIVVRNS 201
>gi|365904937|ref|ZP_09442696.1| tRNA (uracil-5-)-methyltransferase-like protein [Lactobacillus
versmoldensis KCTC 3814]
Length = 451
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 43/87 (49%), Gaps = 9/87 (10%)
Query: 78 RGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAEMEFSFGP 137
+ ++EL + L+Y+GKGV KV D F + D LPGEK VT+ SY F
Sbjct: 8 KNDQIELTIDDLSYEGKGVAKVDD--FTLFVDNALPGEKVKAVVTKVGKSYG-----FAK 60
Query: 138 KRWFPKESLPKRGDHIEN-YALGLHAP 163
+S P R D I+N YA AP
Sbjct: 61 SLEILTKS-PDRVDDIDNIYARTGIAP 86
>gi|302386126|ref|YP_003821948.1| TrmA family RNA methyltransferase [Clostridium saccharolyticum WM1]
gi|302196754|gb|ADL04325.1| RNA methyltransferase, TrmA family [Clostridium saccharolyticum
WM1]
Length = 453
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 50/99 (50%), Gaps = 18/99 (18%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSFG + K G ALG+H G F V+ +C + + +L AV
Sbjct: 127 KMEFSFGDEY--------KEG----PLALGMHKRGSFYDVVTTTECRIVNPDFCNILKAV 174
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMI 224
+DY+ + LG Y H+G+L+HL++R TG M+
Sbjct: 175 KDYFEN--LGTGFYKKMQHTGYLRHLLVRRAVKTGEIMV 211
>gi|424835160|ref|ZP_18259830.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sporogenes
PA 3679]
gi|365978287|gb|EHN14379.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sporogenes
PA 3679]
Length = 451
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 18/99 (18%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEF+FG + K GD LG+H ++ +D C + + +L +V
Sbjct: 127 KMEFTFG--------DMEKGGD----LTLGMHVKNRSFSIVTVDNCEIVDKDFRSILTSV 174
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMI 224
DY+ + GL Y V SH GFL++L++R TG ++
Sbjct: 175 VDYFN--KKGLPKYRVMSHEGFLRNLVIRKAKNTGEILV 211
>gi|329767396|ref|ZP_08258921.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gemella haemolysans
M341]
gi|328836085|gb|EGF85776.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gemella haemolysans
M341]
Length = 458
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 40/64 (62%), Gaps = 3/64 (4%)
Query: 158 LGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLML 217
+G + P D V+NI+KC +Q + N+++ ++ +L LS YD ++HSG ++H+M
Sbjct: 150 MGYYKPRSHD-VVNIEKCFIQYDEHNVLMNKLRSLI--SELNLSVYDENNHSGAIRHIMF 206
Query: 218 RTGS 221
RT +
Sbjct: 207 RTNT 210
>gi|403236934|ref|ZP_10915520.1| TrmA family RNA methyltransferase [Bacillus sp. 10403023]
Length = 462
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 23/100 (23%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEF+F P+ +LGLH G F K+++++ CL+ E V
Sbjct: 138 KMEFTFSPEG-----------------SLGLHEQGNFRKIISLETCLIAGEKMVEGAMEV 180
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMIC 225
+ +D LS Y+ H G L+HLM+R TG M+
Sbjct: 181 ARWAKDHH--LSGYNKDQHEGLLRHLMVRQSFATGEIMLA 218
>gi|225376677|ref|ZP_03753898.1| hypothetical protein ROSEINA2194_02319 [Roseburia inulinivorans DSM
16841]
gi|225211560|gb|EEG93914.1| hypothetical protein ROSEINA2194_02319 [Roseburia inulinivorans DSM
16841]
Length = 498
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 52/106 (49%), Gaps = 18/106 (16%)
Query: 123 RKKGSYAEMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPA 182
R+ G +MEFSFG + F L ALG+H G F ++ ++ C + E
Sbjct: 125 RQTGYRNKMEFSFGDE--FKDGPL----------ALGMHKRGSFYDIVTVENCQIVDEDF 172
Query: 183 NLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMI 224
+L+ Y+R+ ++ Y H+G+L+HL++R TG ++
Sbjct: 173 RKILSVTLAYFREKN--ITYYHKLRHTGYLRHLLVRKAVKTGEILV 216
>gi|410459580|ref|ZP_11313324.1| TrmA family RNA methyltransferase [Bacillus azotoformans LMG 9581]
gi|409930118|gb|EKN67133.1| TrmA family RNA methyltransferase [Bacillus azotoformans LMG 9581]
Length = 460
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 81/200 (40%), Gaps = 66/200 (33%)
Query: 82 LELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAE---MEF-SFGP 137
+E+ E L ++G GV KV GF + LPGE+ ++ + K Y +EF P
Sbjct: 14 IEVTFEDLTHEGAGVAKV--DGFPLFVPNGLPGEQAQIKIVKVKKGYGYGKILEFYKKSP 71
Query: 138 KRWFP-----------------------------KESLPKRGDHIENY----ALGLHAP- 163
R P KE L + G H+EN LG+ P
Sbjct: 72 DRIEPVCPIYKQCGGCQLQHLSCEAQLKFKQKQVKEVLTRIG-HLENITVHPVLGMKDPW 130
Query: 164 -------------------GFFDK----VLNIDKCLLQSEPANLVLAAVQDYWRDPQLGL 200
GFF + ++N+++CL+Q+E + V+ V+ + G+
Sbjct: 131 KYRNKSQVPVGEIEGGLVAGFFQQRSHTIINMEECLIQAEENDRVVQGVKRIAE--KYGM 188
Query: 201 SPYDVHSHSGFLKHLMLRTG 220
Y+ +HSG L+H++ R G
Sbjct: 189 RAYNEETHSGTLRHIVTRYG 208
>gi|347542862|ref|YP_004857499.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Candidatus Arthromitus
sp. SFB-rat-Yit]
gi|346985898|dbj|BAK81573.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Candidatus Arthromitus
sp. SFB-rat-Yit]
Length = 446
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 14/100 (14%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSFG + RG +E LGLH G V+ C L SE ++ +
Sbjct: 125 KMEFSFGDEF---------RGGPLE---LGLHKKGNPFGVVPTYNCKLISEDFRKIMRST 172
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGSFMICAPVM 229
+Y+R ++G PY + +H G+L++L+LR G I ++
Sbjct: 173 VEYFR--EIGAEPYKLKTHKGYLRNLVLREGKEEILLSIV 210
>gi|167748614|ref|ZP_02420741.1| hypothetical protein ANACAC_03387 [Anaerostipes caccae DSM 14662]
gi|167651928|gb|EDR96057.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerostipes caccae
DSM 14662]
Length = 543
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 18/91 (19%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIEN--YALGLHAPGFFDKVLNIDKCLLQSEPANLVLA 187
+MEFSFG D ++ ALG+H F ++NI C + NL+++
Sbjct: 127 KMEFSFG--------------DEVKGGPLALGMHKKNTFHDIVNITDCKIVDNDYNLLVS 172
Query: 188 AVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR 218
V +Y+ + G Y SH G+L+HL++R
Sbjct: 173 CVLNYFSES--GCDFYHKMSHEGYLRHLVIR 201
>gi|269120866|ref|YP_003309043.1| RNA methyltransferase, TrmA family [Sebaldella termitidis ATCC
33386]
gi|268614744|gb|ACZ09112.1| RNA methyltransferase, TrmA family [Sebaldella termitidis ATCC
33386]
Length = 456
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 51/110 (46%), Gaps = 16/110 (14%)
Query: 115 EKFIGRVTRKK--GSYAEMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNI 172
E F+G V K+ G +ME +FG + K G LGLH G F ++ I
Sbjct: 111 ENFLGIVPAKQQFGYRNKMELTFG--------NAEKDGP----LTLGLHKRGSFYDIITI 158
Query: 173 DKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGSF 222
C L E N + D+++ LS Y H+GFL++L++R G F
Sbjct: 159 RDCKLMDEDFNKITNFTIDFFKKEN--LSFYHKMKHTGFLRNLVIRKGEF 206
>gi|329769944|ref|ZP_08261342.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gemella sanguinis
M325]
gi|328837548|gb|EGF87174.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gemella sanguinis
M325]
Length = 445
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 7/66 (10%)
Query: 158 LGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRD--PQLGLSPYDVHSHSGFLKHL 215
+G + P D V+NI+KC +Q + N ++ +Y RD ++ LS YD +H G ++H+
Sbjct: 138 MGYYKPRSHD-VVNIEKCFIQYDEHNKLM----NYTRDLIAEMNLSIYDEKTHKGAIRHI 192
Query: 216 MLRTGS 221
M RT S
Sbjct: 193 MFRTNS 198
>gi|402839168|ref|ZP_10887661.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacteriaceae
bacterium OBRC8]
gi|402270707|gb|EJU19965.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacteriaceae
bacterium OBRC8]
Length = 451
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 14/91 (15%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEF+FG + K GD + +GLH +++++ C + E +L
Sbjct: 128 KMEFTFGNEE--------KDGDLL----IGLHRKNSSMSIVDVEDCKIIDEDYRKILKTT 175
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
+Y R + GL Y + SH G+L+HL++R G
Sbjct: 176 GEYLR--KQGLPHYHIMSHEGYLRHLVIRKG 204
>gi|339442755|ref|YP_004708760.1| hypothetical protein CXIVA_16920 [Clostridium sp. SY8519]
gi|338902156|dbj|BAK47658.1| hypothetical protein CXIVA_16920 [Clostridium sp. SY8519]
Length = 511
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 48/97 (49%), Gaps = 16/97 (16%)
Query: 123 RKKGSYAEMEFSFGPK-RWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEP 181
RK G +ME++FG + R P ALGLH G F ++ + C +
Sbjct: 125 RKDGYRNKMEYTFGDEYRDGP-------------LALGLHKRGAFYDIVPVTGCRIADGD 171
Query: 182 ANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR 218
+L+A +DY+ +LG+ Y H G+L+HL++R
Sbjct: 172 FAAILSATRDYF--SELGVPYYHRMRHEGYLRHLLVR 206
>gi|336113281|ref|YP_004568048.1| TrmA family RNA methyltransferase [Bacillus coagulans 2-6]
gi|335366711|gb|AEH52662.1| RNA methyltransferase, TrmA family [Bacillus coagulans 2-6]
Length = 464
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 23/100 (23%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEF+F P + +LGLH G F KV+ ++ CL+ + +V A+
Sbjct: 138 KMEFTFAP-----------------DGSLGLHEQGNFRKVIPLETCLIAGK--EMVDGAM 178
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMIC 225
+ GL YD +H G L+HLM+R TG M+
Sbjct: 179 EVAAWVKGHGLKGYDKDAHEGLLRHLMVRQSFVTGEMMLA 218
>gi|339443911|ref|YP_004709915.1| SAM-dependent methyltransferase [Eggerthella sp. YY7918]
gi|338903663|dbj|BAK43514.1| SAM-dependent methyltransferase [Eggerthella sp. YY7918]
Length = 526
Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 46/87 (52%), Gaps = 8/87 (9%)
Query: 134 SFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYW 193
S G + K S +R YA G H ++++ + CL+++E A ++ A++
Sbjct: 97 SRGKRNVRNKRSAVRREILCGMYAAGSH------RIVDTEGCLIENEEAKRIIRAIRSLM 150
Query: 194 RDPQLGLSPYDVHSHSGFLKHLMLRTG 220
P+ G+ PY+ + +GFL+H ++R G
Sbjct: 151 --PRFGMEPYNEDTGTGFLRHAVVRVG 175
>gi|408356770|ref|YP_006845301.1| RNA methyltransferase [Amphibacillus xylanus NBRC 15112]
gi|407727541|dbj|BAM47539.1| putative RNA methyltransferase [Amphibacillus xylanus NBRC 15112]
Length = 464
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 23/99 (23%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEF+FG + +LG+H G F ++++++ CL+ + +
Sbjct: 138 KMEFTFGS-----------------DGSLGMHEQGNFRRIIDLETCLIAGATTEATMLEI 180
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMI 224
D+ + Q L Y+ H G L+HLM+R TG M+
Sbjct: 181 SDWAKAHQ--LPGYNKDKHEGLLRHLMIRESYATGEVML 217
>gi|15894714|ref|NP_348063.1| S-adenosylmethionine-dependent methyltransferase [Clostridium
acetobutylicum ATCC 824]
gi|337736656|ref|YP_004636103.1| S-adenosylmethionine-dependent methyltransferase [Clostridium
acetobutylicum DSM 1731]
gi|50401651|sp|Q97J51.1|Y1435_CLOAB RecName: Full=Uncharacterized RNA methyltransferase CA_C1435
gi|15024377|gb|AAK79403.1|AE007655_1 S-adenosylmethionine-dependent methyltransferases [Clostridium
acetobutylicum ATCC 824]
gi|336292765|gb|AEI33899.1| S-adenosylmethionine-dependent methyltransferase [Clostridium
acetobutylicum DSM 1731]
Length = 456
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 18/100 (18%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+ME++FG K G+ LG+HA ++N DKC + E ++L V
Sbjct: 130 KMEYTFG--------DFVKGGE----LTLGMHAKNSGFSIVNTDKCNIVDEDFRIILKTV 177
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMIC 225
+Y+R L + Y V H G+L++L++R TG +I
Sbjct: 178 VEYFRKKDLPI--YKVMQHVGYLRNLVVRKAKNTGEILIA 215
>gi|365902578|ref|ZP_09440401.1| RNA methyltransferase, TrmA family protein [Lactobacillus
malefermentans KCTC 3548]
Length = 455
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 81/210 (38%), Gaps = 76/210 (36%)
Query: 83 ELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAEMEFSFG-PKRWF 141
E+ E L Y+G GV K+ D F + LPGEK +VT+ + S FSFG ++W
Sbjct: 14 EVTIEDLTYQGMGVAKIED--FPIFIAEALPGEKVTVKVTKVQKS-----FSFGRVEKWL 66
Query: 142 PKES--------------------------LPKRGDHIENY------------ALGLHAP 163
K + L + D I+N +G+ P
Sbjct: 67 SKSADRVETGDKKLTQTGIAPLQHLAYDAQLKFKHDQIQNLLNKTDLNIDVLPTIGMDDP 126
Query: 164 --------------------GFFDK----VLNIDKCLLQSEPANLVLAAVQDYWRDPQLG 199
GF+ + ++ I+ +Q + + V+D R +
Sbjct: 127 THYRNKAQVPVRMVNGQLETGFYRQHSHDLVPIEDYYIQDPKIDEAIVVVRDLLR--KYH 184
Query: 200 LSPYDVHSHSGFLKHLMLRTGSF----MIC 225
+ P++ SH+G +++LM+R G + MIC
Sbjct: 185 IEPFNEASHTGVVRNLMIRRGYYSNETMIC 214
>gi|225574546|ref|ZP_03783156.1| hypothetical protein RUMHYD_02623 [Blautia hydrogenotrophica DSM
10507]
gi|225038233|gb|EEG48479.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Blautia
hydrogenotrophica DSM 10507]
Length = 452
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 43/92 (46%), Gaps = 14/92 (15%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSFG K G LGLH G VL C L + +L V
Sbjct: 128 KMEFSFG--------DAEKDGP----LTLGLHKKGSTYDVLTAGDCQLVHQDMTKILTCV 175
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+Y+RD + +S Y H G+L+HL+LR G+
Sbjct: 176 WEYFRDRK--VSYYKKMQHMGYLRHLLLRRGT 205
>gi|299535232|ref|ZP_07048556.1| putative RNA methyltransferase [Lysinibacillus fusiformis ZC1]
gi|424740328|ref|ZP_18168729.1| putative RNA methyltransferase [Lysinibacillus fusiformis ZB2]
gi|298729353|gb|EFI69904.1| putative RNA methyltransferase [Lysinibacillus fusiformis ZC1]
gi|422946145|gb|EKU40564.1| putative RNA methyltransferase [Lysinibacillus fusiformis ZB2]
Length = 455
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 11/80 (13%)
Query: 154 ENYALGLHAPGFFD----KVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHS 209
EN A G GF+ ++++D+CL+Q+ A+ +LA ++ LG+ Y+ H+H
Sbjct: 138 ENEA-GQAIAGFYKTKTHSIVDMDRCLIQTGEADAILAGLKKEL--ATLGIRSYNEHTHE 194
Query: 210 GFLKHLMLR----TGSFMIC 225
G L+H+++R TG M+
Sbjct: 195 GMLRHVVIRKARATGEVMVV 214
>gi|256752408|ref|ZP_05493268.1| RNA methyltransferase, TrmA family [Thermoanaerobacter ethanolicus
CCSD1]
gi|256748743|gb|EEU61787.1| RNA methyltransferase, TrmA family [Thermoanaerobacter ethanolicus
CCSD1]
Length = 452
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 46/99 (46%), Gaps = 15/99 (15%)
Query: 123 RKKGSYAEMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPA 182
++ G +ME++FG D N LGLH G F +V+ DKC + +
Sbjct: 120 KEHGYRNKMEYTFGK-------------DKEGNEVLGLHRKGRFYEVVMTDKCNIVDDDF 166
Query: 183 NLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
L DY + GL YD +H GFL+HL++R S
Sbjct: 167 LKALNLTFDYA--IKKGLPFYDKKTHKGFLRHLVVRKAS 203
>gi|418615376|ref|ZP_13178320.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU118]
gi|374817339|gb|EHR81523.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU118]
Length = 456
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 136 GPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRD 195
P R+ K +P D+ +G + D ++++D CL+Q + V+ V+ YW +
Sbjct: 124 NPWRYRNKSQIPVGQDNSNQVIMGFYRQRSHD-IIDMDSCLIQDKQHQEVMNRVK-YWLN 181
Query: 196 PQLGLSPYDVHSHSGFLKHLMLRTG 220
+L +S Y+ + +G ++HL++RTG
Sbjct: 182 -ELNISIYNEKAKTGLIRHLVVRTG 205
>gi|266624563|ref|ZP_06117498.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium hathewayi
DSM 13479]
gi|288863579|gb|EFC95877.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium hathewayi
DSM 13479]
Length = 463
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 50/105 (47%), Gaps = 22/105 (20%)
Query: 126 GSYAEMEFSFGPKRWFPKESLPKRGDHIEN--YALGLHAPGFFDKVLNIDKCLLQSEPAN 183
G +MEFSFG D ++ ALG+H G F V+ C + +
Sbjct: 130 GYRNKMEFSFG--------------DEFKDGPMALGMHRRGSFYDVVTTTDCQIVNSDFC 175
Query: 184 LVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMI 224
+L A +DY+ +LGL Y H+G+L+HL++R TG ++
Sbjct: 176 EILKASKDYFE--ELGLGFYKKMQHTGYLRHLLVRRAVKTGEILV 218
>gi|312623225|ref|YP_004024838.1| RNA methyltransferase, TrmA family [Caldicellulosiruptor
kronotskyensis 2002]
gi|312203692|gb|ADQ47019.1| RNA methyltransferase, TrmA family [Caldicellulosiruptor
kronotskyensis 2002]
Length = 451
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 54/103 (52%), Gaps = 7/103 (6%)
Query: 118 IGRVTRKKGSYAEMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLL 177
IG+++ K ME P R+ K +LP GD+ + +G + D +++ID CL+
Sbjct: 106 IGKLSPKINDVIGME---NPFRYRNKTALPVGGDY-KKPQIGFYKKMTHD-IVDIDYCLI 160
Query: 178 QSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
Q E + V+ ++D R ++ + YD H G L+H+++R
Sbjct: 161 QHEFCDNVIKGMKDLIRKHKIEV--YDEKKHKGVLRHIVVRNS 201
>gi|384458163|ref|YP_005670583.1| S-adenosylmethionine-dependent methyltransferase [Clostridium
acetobutylicum EA 2018]
gi|325508852|gb|ADZ20488.1| S-adenosylmethionine-dependent methyltransferase [Clostridium
acetobutylicum EA 2018]
Length = 453
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 18/100 (18%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+ME++FG K G+ LG+HA ++N DKC + E ++L V
Sbjct: 127 KMEYTFG--------DFVKGGE----LTLGMHAKNSGFSIVNTDKCNIVDEDFRIILKTV 174
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMIC 225
+Y+R L + Y V H G+L++L++R TG +I
Sbjct: 175 VEYFRKKDLPI--YKVMQHVGYLRNLVVRKAKNTGEILIA 212
>gi|167039861|ref|YP_001662846.1| RNA methyltransferase [Thermoanaerobacter sp. X514]
gi|300915379|ref|ZP_07132693.1| RNA methyltransferase, TrmA family [Thermoanaerobacter sp. X561]
gi|307724814|ref|YP_003904565.1| TrmA family RNA methyltransferase [Thermoanaerobacter sp. X513]
gi|166854101|gb|ABY92510.1| RNA methyltransferase, TrmA family [Thermoanaerobacter sp. X514]
gi|300888655|gb|EFK83803.1| RNA methyltransferase, TrmA family [Thermoanaerobacter sp. X561]
gi|307581875|gb|ADN55274.1| RNA methyltransferase, TrmA family [Thermoanaerobacter sp. X513]
Length = 452
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 46/99 (46%), Gaps = 15/99 (15%)
Query: 123 RKKGSYAEMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPA 182
++ G +ME++FG D N LGLH G F +V+ DKC + +
Sbjct: 120 KEHGYRNKMEYTFGK-------------DKEGNEVLGLHRKGRFYEVVMTDKCNIVDDDF 166
Query: 183 NLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
L DY + GL YD +H GFL+HL++R S
Sbjct: 167 LKALNLTFDYA--IKKGLPFYDKKTHKGFLRHLVVRKAS 203
>gi|302392787|ref|YP_003828607.1| RNA methyltransferase, TrmA family [Acetohalobium arabaticum DSM
5501]
gi|302204864|gb|ADL13542.1| RNA methyltransferase, TrmA family [Acetohalobium arabaticum DSM
5501]
Length = 456
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 154 ENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLK 213
E+ G +APG + +++ ++CL+Q + N V++ + ++ S YD SHSG L+
Sbjct: 144 EDVVTGFYAPGSHE-IIDTEECLIQHQLINRVISKAVELVEKHEI--SIYDEDSHSGLLR 200
Query: 214 HLMLRTG 220
HL++R G
Sbjct: 201 HLVVRVG 207
>gi|168215741|ref|ZP_02641366.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
perfringens NCTC 8239]
gi|182382137|gb|EDT79616.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
perfringens NCTC 8239]
Length = 451
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 74/203 (36%), Gaps = 66/203 (32%)
Query: 78 RGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVT--------------R 123
+G E+EL+ E + + KG V G V PG+K GRVT R
Sbjct: 3 KGNEIELLVEGIEFPAKGFGFV--DGLKVYAKNTFPGQKVFGRVTKKRKEYAEIRVSEVR 60
Query: 124 KKGSYAE-----------------------MEFSFGPKRWFPKESLPKRGDHIE------ 154
+K SY E +E + KE+ + G+ +
Sbjct: 61 EKASYEEDQKCPHFGVCGGCSSQTIPYEKQLELKVEQVKDLFKEAEVQTGEFLGIETSPI 120
Query: 155 -------------------NYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRD 195
LG+H G ++N+DKC+L E +L Y+R+
Sbjct: 121 QWEYRNKMEYTFGDEEKGGELTLGMHMKGKSFGIVNVDKCVLVDEDFRNILDTTVKYFRE 180
Query: 196 PQLGLSPYDVHSHSGFLKHLMLR 218
GL Y + +G+L++L++R
Sbjct: 181 K--GLPFYKIMPRTGYLRYLVVR 201
>gi|347751009|ref|YP_004858574.1| TrmA family RNA methyltransferase [Bacillus coagulans 36D1]
gi|347583527|gb|AEO99793.1| RNA methyltransferase, TrmA family [Bacillus coagulans 36D1]
Length = 468
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 23/100 (23%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEF+F P + +LGLH G F KV+ ++ CL+ + +V +
Sbjct: 138 KMEFTFAP-----------------DGSLGLHEQGNFRKVIPLETCLIAGK--EMVDGTM 178
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMIC 225
+ + GL YD +H G L+HLM+R TG M+
Sbjct: 179 EVAAWVKEHGLKGYDKDAHEGLLRHLMVRQSFATGEMMLA 218
>gi|297528764|ref|YP_003670039.1| TrmA family RNA methyltransferase [Geobacillus sp. C56-T3]
gi|297252016|gb|ADI25462.1| RNA methyltransferase, TrmA family [Geobacillus sp. C56-T3]
Length = 462
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 23/100 (23%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEF+F P E L LGLH G F +V++++ CL+ E V
Sbjct: 137 KMEFTFSP------EGL-----------LGLHEQGNFRQVISLETCLIAGEKIVKAAMEV 179
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMIC 225
+ RD Q L Y +H G L+H+M+R TG M+
Sbjct: 180 ARWARDHQ--LPGYHKDTHEGLLRHVMVRESFATGEVMVA 217
>gi|160937669|ref|ZP_02085029.1| hypothetical protein CLOBOL_02559 [Clostridium bolteae ATCC
BAA-613]
gi|158439314|gb|EDP17066.1| hypothetical protein CLOBOL_02559 [Clostridium bolteae ATCC
BAA-613]
Length = 459
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Query: 137 PKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDP 196
P R+ K P D N G +A G ++ + CLL E +L V+ + +
Sbjct: 124 PWRYRNKAQFPFGKDKDGNVIAGFYA-GRTHAIVEAEDCLLGVEENREILDIVKRFMK-- 180
Query: 197 QLGLSPYDVHSHSGFLKHLMLR----TGSFMIC 225
++ + PYD SH G ++H+++R TG M+C
Sbjct: 181 EMKIEPYDELSHKGLVRHVLIRKGFKTGEIMVC 213
>gi|448236634|ref|YP_007400692.1| 23S rRNA methyltransferase [Geobacillus sp. GHH01]
gi|445205476|gb|AGE20941.1| 23S rRNA methyltransferase [Geobacillus sp. GHH01]
Length = 462
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 23/100 (23%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEF+F P E L LGLH G F +V++++ CL+ E V
Sbjct: 137 KMEFTFSP------EGL-----------LGLHEQGNFRQVISLETCLIAGEKIVKAAMEV 179
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMIC 225
+ RD Q L Y +H G L+H+M+R TG M+
Sbjct: 180 ARWARDHQ--LPGYHKDTHEGLLRHVMVRESFATGEVMVA 217
>gi|261418686|ref|YP_003252368.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y412MC61]
gi|319765501|ref|YP_004131002.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y412MC52]
gi|261375143|gb|ACX77886.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y412MC61]
gi|317110367|gb|ADU92859.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y412MC52]
Length = 462
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 23/100 (23%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEF+F P E L LGLH G F +V++++ CL+ E V
Sbjct: 137 KMEFTFSP------EGL-----------LGLHEQGNFRQVISLETCLIAGEKIVKAAMEV 179
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMIC 225
+ RD Q L Y +H G L+H+M+R TG M+
Sbjct: 180 ARWARDHQ--LPGYHKDTHEGLLRHVMVRESFATGEVMVA 217
>gi|403387994|ref|ZP_10930051.1| RNA methyltransferase [Clostridium sp. JC122]
Length = 466
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 137 PKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDP 196
P + K LP + +G +AP D ++N++ C +Q E + V+ V+++ +
Sbjct: 132 PYNYRNKVQLPVGKNKDGEIVVGFYAPRSHD-IINMECCYIQDEVGDKVIRVVKEWMK-- 188
Query: 197 QLGLSPYDVHSHSGFLKHLMLRTG 220
+ + YD ++SG ++H+M+R G
Sbjct: 189 KFNIQTYDEKTNSGIVRHIMIRKG 212
>gi|386712942|ref|YP_006179264.1| RNA methyltransferase [Halobacillus halophilus DSM 2266]
gi|384072497|emb|CCG43987.1| RNA methyltransferase [Halobacillus halophilus DSM 2266]
Length = 460
Score = 45.4 bits (106), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 38/62 (61%), Gaps = 6/62 (9%)
Query: 164 GFFDK----VLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRT 219
GF+ K ++++D C++Q E + ++ V+ +LG+S YD +H G L+H+M+RT
Sbjct: 152 GFYQKRSHNIIDMDTCIIQDELNDRMVETVRRIA--TELGISAYDEDTHRGTLRHIMVRT 209
Query: 220 GS 221
G
Sbjct: 210 GQ 211
>gi|170761366|ref|YP_001788185.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
A3 str. Loch Maree]
gi|169408355|gb|ACA56766.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
A3 str. Loch Maree]
Length = 450
Score = 45.4 bits (106), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEF+FG + K GD LG+H ++ +DKC + +L V
Sbjct: 127 KMEFTFG--------DMEKGGD----LTLGMHVKNRNFSIVTVDKCEIVDRDFRNILTTV 174
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMI 224
+Y+ + + L Y V SH GFL++L++R TG +I
Sbjct: 175 VNYFNEKR--LPKYRVMSHEGFLRNLVIRKAKNTGEILI 211
>gi|355678277|ref|ZP_09060956.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium citroniae
WAL-17108]
gi|354812723|gb|EHE97338.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium citroniae
WAL-17108]
Length = 464
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 7/123 (5%)
Query: 110 RVLPGEKFIGRVTRKKGSYAEMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKV 169
+VL IGR R++ + + P R+ K P D G +A D +
Sbjct: 97 KVLNNLMRIGRFGREEINMLPIMGMEHPWRYRNKAQFPFGRDKNGKIIAGFYAGRTHDII 156
Query: 170 LNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMIC 225
N D CLL E +L ++ + + G+ PYD H G ++H ++R TG M+C
Sbjct: 157 EN-DDCLLGVEENQEILGIIKRFMEEQ--GVEPYDETGHKGLVRHALIRKGFKTGEIMVC 213
Query: 226 APV 228
+
Sbjct: 214 LVI 216
>gi|317501056|ref|ZP_07959262.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Lachnospiraceae
bacterium 8_1_57FAA]
gi|336439251|ref|ZP_08618868.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
bacterium 1_1_57FAA]
gi|316897443|gb|EFV19508.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Lachnospiraceae
bacterium 8_1_57FAA]
gi|336016748|gb|EGN46526.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
bacterium 1_1_57FAA]
Length = 460
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 10/111 (9%)
Query: 119 GRVTRKKGSYAEMEFSFGPKRWFPKESLPKR------GDHIEN--YALGLHAPGFFDKVL 170
G++ R + E+ F + PKE + GD ++ +LGLH G VL
Sbjct: 102 GQIRRIMDEAVDGEYLFEGVKASPKEFAYRNKMEFSFGDEYKDGPLSLGLHKKGSTYDVL 161
Query: 171 NIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
C L + N +L V +Y+++ + +S Y H G+L+HL+LR G
Sbjct: 162 TASDCKLVHKDMNKILVCVLEYFKERK--VSYYKKMQHVGYLRHLLLRRGD 210
>gi|312134353|ref|YP_004001691.1| RNA methyltransferase, TrmA family [Caldicellulosiruptor owensensis
OL]
gi|311774404|gb|ADQ03891.1| RNA methyltransferase, TrmA family [Caldicellulosiruptor owensensis
OL]
Length = 451
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 53/103 (51%), Gaps = 7/103 (6%)
Query: 118 IGRVTRKKGSYAEMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLL 177
IG+++ + ME P R+ K +LP GD+ +N +G + D +++ID CL+
Sbjct: 106 IGKLSPRINDVIGME---KPFRYRNKTALPVGGDY-KNPQIGFYKKMTHD-IVDIDYCLI 160
Query: 178 QSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
Q E + V+ ++D R + + Y H G L+H+++R
Sbjct: 161 QHEVCDDVIKGMKDLIR--KYNIEVYSEKKHQGVLRHIVVRNS 201
>gi|170757395|ref|YP_001782496.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
B1 str. Okra]
gi|169122607|gb|ACA46443.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
B1 str. Okra]
Length = 458
Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEF+FG + K GD LG+H ++ +DKC + +L V
Sbjct: 132 KMEFTFG--------DMEKGGD----LTLGMHVKNRNFSIVTVDKCEIVDRDFRNILTTV 179
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMI 224
+Y+ + + L Y V SH GFL++L++R TG +I
Sbjct: 180 VNYFNEKR--LPKYRVMSHEGFLRNLVIRKAKNTGEILI 216
>gi|339627279|ref|YP_004718922.1| RNA methyltransferase [Sulfobacillus acidophilus TPY]
gi|379008340|ref|YP_005257791.1| 23S rRNA m(5)U-1939 methyltransferase [Sulfobacillus acidophilus
DSM 10332]
gi|339285068|gb|AEJ39179.1| RNA methyltransferase [Sulfobacillus acidophilus TPY]
gi|361054602|gb|AEW06119.1| 23S rRNA m(5)U-1939 methyltransferase [Sulfobacillus acidophilus
DSM 10332]
Length = 449
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 3/72 (4%)
Query: 158 LGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLML 217
LGL G +V+++ C +Q+ N VLAAV+D Q G+ PY+ H+G L+H+++
Sbjct: 141 LGLFQRGTH-QVIDVTACAIQNTLINHVLAAVRDLVN--QSGIEPYEETRHTGILRHVLI 197
Query: 218 RTGSFMICAPVM 229
RT + A V+
Sbjct: 198 RTSRAVGQALVL 209
>gi|226950293|ref|YP_002805384.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
A2 str. Kyoto]
gi|226843642|gb|ACO86308.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
A2 str. Kyoto]
Length = 450
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEF+FG + K GD LG+H ++ +DKC + +L V
Sbjct: 127 KMEFTFG--------DMEKGGD----LTLGMHVKNRNFSIVTVDKCEIVDRDFRNILTTV 174
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMI 224
+Y+ + + L Y V SH GFL++L++R TG +I
Sbjct: 175 VNYFNEKR--LPKYRVMSHEGFLRNLVIRKAKNTGEILI 211
>gi|196250365|ref|ZP_03149058.1| (Uracil-5)-methyltransferase [Geobacillus sp. G11MC16]
gi|196210254|gb|EDY05020.1| (Uracil-5)-methyltransferase [Geobacillus sp. G11MC16]
Length = 400
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 23/100 (23%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEF+F P E L LGLH G F ++++++ CL+ E V
Sbjct: 137 KMEFTFSP------EGL-----------LGLHEQGNFRQIISLETCLIAGERIVKAAMEV 179
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMIC 225
+ RD Q L Y +H G L+H+M+R TG M+
Sbjct: 180 ARWARDHQ--LPGYHKDTHEGLLRHVMVRESFATGEVMVA 217
>gi|373494992|ref|ZP_09585585.1| hypothetical protein HMPREF0380_01223 [Eubacterium infirmum F0142]
gi|371966661|gb|EHO84145.1| hypothetical protein HMPREF0380_01223 [Eubacterium infirmum F0142]
Length = 389
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 14/91 (15%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+ME++FG L K G+ LG+H G F ++ +D C L E N +L
Sbjct: 65 KMEYTFG--------DLVKDGE----ITLGMHKSGQFMSIVTVDHCQLVDEDFNKILRCT 112
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
D+ + G Y +H+G L++L++R G
Sbjct: 113 LDFAIEK--GYKKYHKRTHTGLLRNLLIRKG 141
>gi|168181545|ref|ZP_02616209.1| 23S rRNA -methyltransferase RumA [Clostridium botulinum Bf]
gi|237796317|ref|YP_002863869.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
Ba4 str. 657]
gi|182674982|gb|EDT86943.1| 23S rRNA -methyltransferase RumA [Clostridium botulinum Bf]
gi|229260413|gb|ACQ51446.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
Ba4 str. 657]
Length = 453
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEF+FG + K GD LG+H ++ +DKC + +L V
Sbjct: 127 KMEFTFG--------DMEKGGD----LTLGMHVKNRNFSIVTVDKCEIVDRDFRNILTTV 174
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMI 224
+Y+ + + L Y V SH GFL++L++R TG +I
Sbjct: 175 VNYFNEKR--LPKYRVMSHEGFLRNLVIRKAKNTGEILI 211
>gi|78357737|ref|YP_389186.1| TrmA family RNA methyltransferase [Desulfovibrio alaskensis G20]
gi|78220142|gb|ABB39491.1| RNA methyltransferase, TrmA family [Desulfovibrio alaskensis G20]
Length = 457
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 20/99 (20%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEF+F D + LGL A G D V+NI +C LQS+ ++ +V
Sbjct: 134 KMEFAF-------------ENDSPQGIRLGLRARGSHD-VINISECHLQSQRCVRIVDSV 179
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMI 224
+ + Q GL+ +DV S GF ++L++R TG M+
Sbjct: 180 RRW--AAQTGLTAWDVRSGEGFFRYLVIRETLYTGQCMV 216
>gi|410726572|ref|ZP_11364809.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp.
Maddingley MBC34-26]
gi|410600605|gb|EKQ55132.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp.
Maddingley MBC34-26]
Length = 454
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEF+FG + +G E +LG+H G +L +D+C L E ++
Sbjct: 127 KMEFTFGDE---------AKG---EPLSLGMHMRGKSFGILTVDECKLVDEDYRKIIKLT 174
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMI 224
DY+R LS Y + GFL+HL++R TG ++
Sbjct: 175 VDYFRTKD--LSYYKIMKAEGFLRHLVIRKAQNTGEILV 211
>gi|304406301|ref|ZP_07387958.1| RNA methyltransferase, TrmA family [Paenibacillus curdlanolyticus
YK9]
gi|304344885|gb|EFM10722.1| RNA methyltransferase, TrmA family [Paenibacillus curdlanolyticus
YK9]
Length = 513
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 6/72 (8%)
Query: 153 IENYALGLHAPGFF----DKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSH 208
IE+ A G GF+ +++++D CL+Q E + V+ ++ +LG++ YD S
Sbjct: 191 IEDGAAGGLIGGFYAQGSHRIIDMDACLIQHERNDEVVRQIKRI--GTELGITAYDEESG 248
Query: 209 SGFLKHLMLRTG 220
G L+H+++RTG
Sbjct: 249 RGLLRHVVVRTG 260
>gi|317470873|ref|ZP_07930254.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerostipes sp.
3_2_56FAA]
gi|316901700|gb|EFV23633.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerostipes sp.
3_2_56FAA]
Length = 452
Score = 45.1 bits (105), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 18/91 (19%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIEN--YALGLHAPGFFDKVLNIDKCLLQSEPANLVLA 187
+MEFSFG D ++ ALG+H F ++NI C + NL+++
Sbjct: 127 KMEFSFG--------------DEVKGGPLALGMHKKNTFHDIVNITDCKIVDNDFNLLVS 172
Query: 188 AVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR 218
+Y+ Q G Y SH G+L+HL++R
Sbjct: 173 CALNYF--SQSGCDFYHKMSHEGYLRHLVIR 201
>gi|375007230|ref|YP_004980862.1| putative RNA methyltransferase [Geobacillus thermoleovorans
CCB_US3_UF5]
gi|359286078|gb|AEV17762.1| putative RNA methyltransferase [Geobacillus thermoleovorans
CCB_US3_UF5]
Length = 457
Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 38/62 (61%), Gaps = 6/62 (9%)
Query: 164 GFFDK----VLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRT 219
GF+ + ++++D CL+Q E ++V+ AV+ + G+ PYD +H G L+H++ R
Sbjct: 150 GFYKERTHEIIDMDACLIQQEANDVVVQAVKRIAE--RYGIPPYDEATHKGVLRHIVARY 207
Query: 220 GS 221
G+
Sbjct: 208 GA 209
>gi|294674202|ref|YP_003574818.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella ruminicola
23]
gi|294473371|gb|ADE82760.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Prevotella ruminicola
23]
Length = 483
Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 10/103 (9%)
Query: 130 EMEFSFGPKRWFPKESLPKR-GDHIENY----ALGLHAPGFFDKVLNIDKCLLQSEPANL 184
+++F KR+ KE + D ++ A+G H G FDK+L I+KC L N
Sbjct: 133 KLDFGCANKRYLTKEQIQTLPNDESQSLKDVPAIGFHITGAFDKILPIEKCWLMDNLQNE 192
Query: 185 VLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR---TGSFMI 224
+ ++Y GLS +D+ + G L+ +++R +G +M+
Sbjct: 193 IRNEAREYAMAN--GLSFFDLRAQVGLLRDIIIRNSASGEWMV 233
>gi|160879502|ref|YP_001558470.1| RNA methyltransferase [Clostridium phytofermentans ISDg]
gi|160428168|gb|ABX41731.1| RNA methyltransferase, TrmA family [Clostridium phytofermentans
ISDg]
Length = 463
Score = 44.7 bits (104), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 47/103 (45%), Gaps = 18/103 (17%)
Query: 126 GSYAEMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLV 185
G +MEFSFG + F L ALGLH G F ++ C L E N +
Sbjct: 127 GYRNKMEFSFGDE--FKDGPL----------ALGLHKKGSFYDIVTTSDCKLVHEDYNRI 174
Query: 186 LAAVQDYWRDPQLGLSPYDVHSHSGFLKHLML----RTGSFMI 224
L V + + L+ Y SH G+L+HL++ RTG ++
Sbjct: 175 LGCVLSLAK--EYNLNYYHKMSHEGYLRHLLIRRAARTGEILV 215
>gi|407011951|gb|EKE26441.1| hypothetical protein ACD_4C00290G0001, partial [uncultured
bacterium (gcode 4)]
Length = 232
Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 9/93 (9%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EFS+G + + R ++ H G FD++++ C+L + N + +V
Sbjct: 117 KVEFSWG-------KYISSREHIHADFRFWFHKQGEFDRIIDCTYCVLADDQINEIFKSV 169
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGSF 222
++ R+ LGL YD +H GF +H ++R +
Sbjct: 170 DEFSRN--LGLPTYDPVTHIGFWRHFVVRKALY 200
>gi|365823446|ref|YP_003962414.2| hypothetical protein [Eubacterium limosum KIST612]
gi|358443928|gb|ADO39451.2| hypothetical protein ELI_4517 [Eubacterium limosum KIST612]
Length = 454
Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 150 GDHIEN--YALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHS 207
GD +++ LG+H G F ++ D C L E N++ AV Y+++ + + S
Sbjct: 137 GDDVKDGPLLLGMHERGSFYNIVKTDCCRLTDEDFNIIQRAVLGYFQEKD--QTYFHKRS 194
Query: 208 HSGFLKHLMLRTG 220
H GFL+HL++R G
Sbjct: 195 HEGFLRHLVIRKG 207
>gi|138893992|ref|YP_001124445.1| SAM-dependent methyltransferase [Geobacillus thermodenitrificans
NG80-2]
gi|134265505|gb|ABO65700.1| SAM-dependent methyltransferase [Geobacillus thermodenitrificans
NG80-2]
Length = 463
Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 23/100 (23%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEF+F P E L LGLH G F ++++++ CL+ E V
Sbjct: 137 KMEFTFSP------EGL-----------LGLHEQGNFRQIISLETCLIAGERIVKAAMEV 179
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMIC 225
+ RD Q L Y +H G L+H+M+R TG M+
Sbjct: 180 ARWARDHQ--LPGYHKDTHEGLLRHVMVRESFATGEVMVA 217
>gi|448236625|ref|YP_007400683.1| 23S rRNA methyltransferase [Geobacillus sp. GHH01]
gi|445205467|gb|AGE20932.1| 23S rRNA methyltransferase [Geobacillus sp. GHH01]
Length = 457
Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 38/62 (61%), Gaps = 6/62 (9%)
Query: 164 GFFDK----VLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRT 219
GF+ + ++++D CL+Q E ++V+ AV+ + G+ PYD +H G L+H++ R
Sbjct: 150 GFYKERTHEIIDMDACLIQQEANDVVVQAVKRIAE--RYGIPPYDETTHKGVLRHIVARY 207
Query: 220 GS 221
G+
Sbjct: 208 GA 209
>gi|56418892|ref|YP_146210.1| RNA methyltransferase [Geobacillus kaustophilus HTA426]
gi|375007250|ref|YP_004980882.1| RNA methyltransferase, TrmA [Geobacillus thermoleovorans
CCB_US3_UF5]
gi|56378734|dbj|BAD74642.1| RNA methyltransferase [Geobacillus kaustophilus HTA426]
gi|359286098|gb|AEV17782.1| RNA methyltransferase, TrmA [Geobacillus thermoleovorans
CCB_US3_UF5]
Length = 462
Score = 44.7 bits (104), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 46/100 (46%), Gaps = 23/100 (23%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEF+F P E L LGLH G F +V++++ CL+ E V
Sbjct: 137 KMEFTFSP------EGL-----------LGLHERGNFRQVISLETCLIAGEKIVKAAMEV 179
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMIC 225
+ RD + L Y +H G L+HLM+R TG M+
Sbjct: 180 ARWARDHR--LPGYHKDTHEGLLRHLMVRESFATGEVMVA 217
>gi|452991590|emb|CCQ97087.1| Uncharacterized RNA methyltransferase CTC_01941 [Clostridium
ultunense Esp]
Length = 453
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 18/98 (18%)
Query: 123 RKKGSYAEMEFSFGPKRWFPKESLPKRGDHIEN--YALGLHAPGFFDKVLNIDKCLLQSE 180
R +G +ME++FG D I+ LGLH G F ++++ D C + +
Sbjct: 121 RVEGYRNKMEYTFG--------------DEIKGGPLVLGLHRRGRFYEIIDTDGCNIADK 166
Query: 181 PANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR 218
L+ V Y+R ++ + Y+ +H G L+HL++R
Sbjct: 167 DFTLIRKRVMKYFR--EINTAFYNKRTHEGILRHLVIR 202
>gi|164687720|ref|ZP_02211748.1| hypothetical protein CLOBAR_01362 [Clostridium bartlettii DSM
16795]
gi|164603494|gb|EDQ96959.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium bartlettii
DSM 16795]
Length = 453
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 157 ALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLM 216
+G+H G +L +D C+L + +L A ++++R GL Y + H G+L+HL+
Sbjct: 142 TIGMHKKGRHIDILTVDGCMLIDQDFIKILTATEEFFRAE--GLPYYRGNDHKGYLRHLV 199
Query: 217 LRTG 220
+R G
Sbjct: 200 VRKG 203
>gi|307688528|ref|ZP_07630974.1| RNA methyltransferase, TrmA family protein [Clostridium
cellulovorans 743B]
Length = 462
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 49/82 (59%), Gaps = 4/82 (4%)
Query: 137 PKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDP 196
P R+ K LP G +E+ +G ++ + +++++ C +Q E A+ V+ V+ + ++
Sbjct: 132 PYRYRNKVQLP-VGGTVEDVKIGFYSQRSHN-IIDMESCNIQFEEADTVVDIVKQWMQEN 189
Query: 197 QLGLSPYDVHSHSGFLKHLMLR 218
++ PY+ +H+G +KH+M+R
Sbjct: 190 KI--QPYNEETHTGIVKHIMVR 209
>gi|421076571|ref|ZP_15537553.1| RNA methyltransferase, TrmA family [Pelosinus fermentans JBW45]
gi|392525183|gb|EIW48327.1| RNA methyltransferase, TrmA family [Pelosinus fermentans JBW45]
Length = 459
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 157 ALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLM 216
A+G A G + ++N + C +Q E NLV A+Q+ +LG+S YD + G ++H++
Sbjct: 148 AIGCFAQGTHN-IINTEHCYIQHEANNLVAQALQEIV--TELGISTYDERTGRGIMRHVL 204
Query: 217 LRTGS 221
R G+
Sbjct: 205 GRVGT 209
>gi|253580204|ref|ZP_04857471.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251848723|gb|EES76686.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 454
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 42/91 (46%), Gaps = 14/91 (15%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSFG K G LGLH G VL D C L E +L V
Sbjct: 129 KMEFSFGDAY--------KDGP----LTLGLHKKGSTYDVLTADDCQLVHEDMTKILTCV 176
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
+Y+ + +S Y H+G+L+HL+LR G
Sbjct: 177 HEYFL--KRNVSYYKKMQHTGYLRHLLLRRG 205
>gi|187778559|ref|ZP_02995032.1| hypothetical protein CLOSPO_02154 [Clostridium sporogenes ATCC
15579]
gi|187772184|gb|EDU35986.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sporogenes
ATCC 15579]
Length = 451
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 18/99 (18%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEF+FG + K GD LG+H ++ +D C + + +L +V
Sbjct: 127 KMEFTFG--------DMEKGGD----LTLGMHVKNRSFSIVTVDNCEIVDKDFRSILTSV 174
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMI 224
+Y+ + GL Y V SH GFL++L++R TG ++
Sbjct: 175 VNYF--SKKGLPKYRVMSHEGFLRNLVIRKAKNTGEILV 211
>gi|310658499|ref|YP_003936220.1| Uncharacterized RNA methyltransferase CTC_01941 [[Clostridium]
sticklandii]
gi|308825277|emb|CBH21315.1| Uncharacterized RNA methyltransferase CTC_01941 [[Clostridium]
sticklandii]
Length = 449
Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 14/91 (15%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEF+FG K K G+ LG+HA + + C++ E +L A
Sbjct: 127 KMEFTFGDKE--------KGGE----LMLGMHAKNSPMSIEYVHSCMIVDEDYRKILVAT 174
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
+++R+ L Y V +H G+L+HL+LR G
Sbjct: 175 TEFFRNANL--PHYRVLAHEGYLRHLVLRKG 203
>gi|302873306|ref|YP_003841939.1| RNA methyltransferase, TrmA family [Clostridium cellulovorans 743B]
gi|302576163|gb|ADL50175.1| RNA methyltransferase, TrmA family [Clostridium cellulovorans 743B]
Length = 472
Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 49/82 (59%), Gaps = 4/82 (4%)
Query: 137 PKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDP 196
P R+ K LP G +E+ +G ++ + +++++ C +Q E A+ V+ V+ + ++
Sbjct: 142 PYRYRNKVQLP-VGGTVEDVKIGFYSQRSHN-IIDMESCNIQFEEADTVVDIVKQWMQEN 199
Query: 197 QLGLSPYDVHSHSGFLKHLMLR 218
++ PY+ +H+G +KH+M+R
Sbjct: 200 KI--QPYNEETHTGIVKHIMVR 219
>gi|331091394|ref|ZP_08340233.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
bacterium 2_1_46FAA]
gi|330404258|gb|EGG83805.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
bacterium 2_1_46FAA]
Length = 454
Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 60/135 (44%), Gaps = 19/135 (14%)
Query: 87 ESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAEMEFSFGPKRWFPKESL 146
E + K + V ++ D VV D V G K + ++ +MEFSFG +
Sbjct: 92 EQIKMKSQQVKEILDA--VVKDDYVFEGVK---KSPKQFAYRNKMEFSFGDEY------- 139
Query: 147 PKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVH 206
K G +LGLH G VL + C L E +L V Y+++ G+ Y
Sbjct: 140 -KDG----PLSLGLHKKGSTYDVLTVSDCKLVHEDMTKILNCVLTYFQEK--GVGYYKKM 192
Query: 207 SHSGFLKHLMLRTGS 221
H G+L+HL+LR G
Sbjct: 193 QHIGYLRHLLLRRGD 207
>gi|433462528|ref|ZP_20420110.1| RNA methyltransferase, partial [Halobacillus sp. BAB-2008]
gi|432188717|gb|ELK45879.1| RNA methyltransferase, partial [Halobacillus sp. BAB-2008]
Length = 344
Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 164 GFFDK----VLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRT 219
GF+ K ++++D CL+Q E + ++ V+ + G+ YD +H G L+H+M+RT
Sbjct: 34 GFYQKRSHNIIDMDTCLIQDEVNDRMVETVRRI--ASRYGIDAYDEQTHRGVLRHIMVRT 91
Query: 220 GS 221
G
Sbjct: 92 GQ 93
>gi|260437712|ref|ZP_05791528.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Butyrivibrio crossotus
DSM 2876]
gi|292809735|gb|EFF68940.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Butyrivibrio crossotus
DSM 2876]
Length = 461
Score = 44.7 bits (104), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Query: 137 PKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDP 196
P R+ K P D N +G +A G ++ + CL+ S+ +LA ++ +
Sbjct: 124 PYRYRNKAQFPVGTDKDGNIVMGFYA-GRTHSIIPNEDCLIGSDINAGILAEIKAFMIMN 182
Query: 197 QLGLSPYDVHSHSGFLKHLMLR----TGSFMICAPV 228
+ YD +SHSG ++H+++R TG M+C +
Sbjct: 183 HI--KSYDENSHSGLVRHILIRTGFTTGQIMVCVVI 216
>gi|197302048|ref|ZP_03167109.1| hypothetical protein RUMLAC_00776 [Ruminococcus lactaris ATCC
29176]
gi|197298857|gb|EDY33396.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ruminococcus lactaris
ATCC 29176]
Length = 559
Score = 44.3 bits (103), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 44/91 (48%), Gaps = 14/91 (15%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSFG + K G +LGLH G VL C L N +L+ V
Sbjct: 130 KMEFSFGDEY--------KDGP----LSLGLHKKGSTYDVLTAADCQLVHRDMNQILSCV 177
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
Y+R + +S Y H+G+L+HL+LR G
Sbjct: 178 LAYFR--EWNVSYYKKMQHTGYLRHLLLRRG 206
>gi|255994151|ref|ZP_05427286.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacterium saphenum
ATCC 49989]
gi|255993819|gb|EEU03908.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacterium saphenum
ATCC 49989]
Length = 399
Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 14/91 (15%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEF+FG + G+ LG H G + +++I C L N +L AV
Sbjct: 64 KMEFTFGNS--------EREGE----LKLGFHEKGNYRNIVDIHSCQLVDTDYNEILNAV 111
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
+ + Q Y+ H+GFL+HL++R+G
Sbjct: 112 RQFA--FQNNYDFYNKKKHNGFLRHLVIRSG 140
>gi|323489776|ref|ZP_08095001.1| putative RNA methyltransferase [Planococcus donghaensis MPA1U2]
gi|323396514|gb|EGA89335.1| putative RNA methyltransferase [Planococcus donghaensis MPA1U2]
Length = 453
Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
Query: 137 PKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDP 196
P R+ K +P G G + P D + + D CL+Q+ A+ ++ A++ D
Sbjct: 125 PWRYRNKSQIP-FGTQDGKVVAGFYQPRSHD-IADTDTCLIQTPEADAIMVALKKSLID- 181
Query: 197 QLGLSPYDVHSHSGFLKHLMLR----TGSFMIC 225
+G+ PY+ +H G L+H+++R TG M+
Sbjct: 182 -MGIDPYEEATHRGMLRHVVVRKARATGEIMVV 213
>gi|223044024|ref|ZP_03614064.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus capitis
SK14]
gi|417906385|ref|ZP_12550175.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus capitis
VCU116]
gi|222442567|gb|EEE48672.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus capitis
SK14]
gi|341598041|gb|EGS40559.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus capitis
VCU116]
Length = 455
Score = 44.3 bits (103), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 137 PKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDP 196
P R+ K +P D +G + D ++++D CL+Q E ++ V+ ++
Sbjct: 125 PWRYRNKSQIPVGKDKDNKAIMGFYRQRSHD-IIDMDSCLIQDEQHQNIMNYVKHWFN-- 181
Query: 197 QLGLSPYDVHSHSGFLKHLMLRTG 220
+L +S YD + G ++HL++RTG
Sbjct: 182 ELNMSIYDEKNKRGLMRHLVIRTG 205
>gi|335045913|ref|ZP_08538936.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Oribacterium sp. oral
taxon 108 str. F0425]
gi|333759699|gb|EGL37256.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Oribacterium sp. oral
taxon 108 str. F0425]
Length = 520
Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 13/111 (11%)
Query: 119 GRVTRKKGSYAEMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQ 178
GR R++ + E F G K+ KE HI Y H +++ + CL+
Sbjct: 116 GRGIREEKTVGERVFEEG-KKGSEKEQDSYNSLHIGFYGFHSH------RIIETEDCLIN 168
Query: 179 SEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMIC 225
S +L+L ++++ R+ Q +S Y+ + G L+H+ LR TG ++C
Sbjct: 169 SAENSLILRCIKNWAREYQ--ISGYEEETGKGLLRHIFLRKGFSTGEILLC 217
>gi|242371794|ref|ZP_04817368.1| TrmA family RNA methyltransferase [Staphylococcus epidermidis
M23864:W1]
gi|242350495|gb|EES42096.1| TrmA family RNA methyltransferase [Staphylococcus epidermidis
M23864:W1]
Length = 453
Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 137 PKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDP 196
P R+ K +P + +G + D ++++D CL+Q E V+ V+ + +
Sbjct: 125 PWRYRNKSQIPVGKNKDGQVIMGFYRQRSHD-IIDMDHCLIQDEQHQEVMNHVKQWLNE- 182
Query: 197 QLGLSPYDVHSHSGFLKHLMLRTG 220
L +S YD S +G ++HL++RTG
Sbjct: 183 -LNISIYDEQSKTGLIRHLVVRTG 205
>gi|293115663|ref|ZP_05792525.2| 23S rRNA (uracil-5-)-methyltransferase RumA [Butyrivibrio crossotus
DSM 2876]
gi|292808836|gb|EFF68041.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Butyrivibrio crossotus
DSM 2876]
Length = 366
Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 150 GDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHS 209
GD N G + G K++ IDKCLL +E A+ ++A V + PY+ +
Sbjct: 48 GDRKGNIYAGTYEAGSH-KIVPIDKCLLDNEKADAIIATVIKLMK--SFKYRPYNEDTGR 104
Query: 210 GFLKHLMLR----TGSFMICAPV 228
GFL+H+++R TG M+ V
Sbjct: 105 GFLRHILIRTAEVTGEIMVTLVV 127
>gi|335357679|ref|ZP_08549549.1| tRNA (Uracil-5-) -methyltransferase [Lactobacillus animalis KCTC
3501]
Length = 458
Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 82/209 (39%), Gaps = 71/209 (33%)
Query: 77 IRGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKF------IG----------- 119
++ Q++E L Y+G GV KV G+ + CD LPGEK +G
Sbjct: 8 VKNQKVEATIVDLTYQGMGVAKV--DGYSLFCDDALPGEKVKLHVLKVGKNFGYAKVIER 65
Query: 120 ------RVTRKKGSYAEMEFSFGPKRWFP-----KESLPK---RGDHIENYA----LGLH 161
RVT K +Y++ + +P K+ L + H+ + A LG+
Sbjct: 66 LTTSPDRVTGKGKAYSQTGIAPLQHLAYPAQLKFKQKLVSDLLQKAHLADLAVEQTLGMA 125
Query: 162 AP--------------------GFFDK----VLNIDKCLLQ----SEPANLVLAAVQDYW 193
P GFF + L + L+Q E VLA +Q Y
Sbjct: 126 EPYAYRNKAQVPVRELDGKLTAGFFKRGSHNFLPLTDFLIQDKRIDEVIQKVLAILQKYQ 185
Query: 194 RDPQLGLSPYDVHSHSGFLKHLMLRTGSF 222
++ YD +HSG L+H+M+R G +
Sbjct: 186 ------VTAYDEVTHSGILRHIMVRRGHY 208
>gi|20808214|ref|NP_623385.1| SAM-dependent methyltransferase [Thermoanaerobacter tengcongensis
MB4]
gi|254479579|ref|ZP_05092891.1| 23S rRNA (uracil-5-)-methyltransferase [Carboxydibrachium pacificum
DSM 12653]
gi|50401615|sp|Q8R933.1|Y1797_THETN RecName: Full=Uncharacterized RNA methyltransferase TTE1797
gi|20516809|gb|AAM24989.1| SAM-dependent methyltransferases related to tRNA
(uracil-5-)-methyltransferase [Thermoanaerobacter
tengcongensis MB4]
gi|214034482|gb|EEB75244.1| 23S rRNA (uracil-5-)-methyltransferase [Carboxydibrachium pacificum
DSM 12653]
Length = 450
Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 15/104 (14%)
Query: 118 IGRVTRKKGSYAEMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLL 177
I R + G +ME++FG R K ALGLH G F V+ DKC +
Sbjct: 115 IERSPKVYGYRNKMEYTFGTDREGKK-------------ALGLHRKGKFYDVVMTDKCNI 161
Query: 178 QSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
E L+ +Y + L YD +H G+L++L++R S
Sbjct: 162 VDEDFTKALSLTFNYALEKNLPF--YDKKTHEGYLRYLVVRKAS 203
>gi|363898588|ref|ZP_09325110.1| hypothetical protein HMPREF9625_01794 [Oribacterium sp. ACB1]
gi|395208882|ref|ZP_10398047.1| methyltransferase domain protein [Oribacterium sp. ACB8]
gi|361960493|gb|EHL13729.1| hypothetical protein HMPREF9625_01794 [Oribacterium sp. ACB1]
gi|394705483|gb|EJF13009.1| methyltransferase domain protein [Oribacterium sp. ACB8]
Length = 463
Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 14/99 (14%)
Query: 123 RKKGSYAEMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPA 182
+K+ +MEFSFG + K G LGLH F +LN + C L
Sbjct: 53 KKEAYRNKMEFSFGDQE--------KDGP----LCLGLHQKRSFFNILNTEDCRLPHPDM 100
Query: 183 NLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+L A ++Y+ D G+ + H G+L+HL++R G
Sbjct: 101 GKILLATREYFLDK--GVGYFHKKKHEGYLRHLLIRRGE 137
>gi|306820250|ref|ZP_07453891.1| 23S rRNA (uracil-5-)-methyltransferase [Eubacterium yurii subsp.
margaretiae ATCC 43715]
gi|304551704|gb|EFM39654.1| 23S rRNA (uracil-5-)-methyltransferase [Eubacterium yurii subsp.
margaretiae ATCC 43715]
Length = 452
Score = 44.3 bits (103), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 14/91 (15%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEF+FG + K G+ + +GLH +++++ CLL E +L
Sbjct: 127 KMEFTFGNE--------VKDGELL----IGLHKKNSPMGIVSVEDCLLVDEDYRTILKMT 174
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
+Y+R L Y + SH G+L+HL++R G
Sbjct: 175 GEYFRAKNL--PHYHIKSHEGYLRHLVIRKG 203
>gi|51893956|ref|YP_076647.1| RNA methyltransferase [Symbiobacterium thermophilum IAM 14863]
gi|51857645|dbj|BAD41803.1| RNA methyltransferase [Symbiobacterium thermophilum IAM 14863]
Length = 459
Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 159 GLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR 218
G APG ++++I++C +Q AN ++A V++ + G+ YD SH+G L+H++ R
Sbjct: 151 GFFAPGSH-RIVDIERCAIQHPLANRIMAEVKELA--GRFGVPIYDERSHTGVLRHVLAR 207
Query: 219 TG 220
G
Sbjct: 208 VG 209
>gi|456014429|gb|EMF48036.1| RNA methyltransferase, TrmA family [Planococcus halocryophilus Or1]
Length = 453
Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
Query: 137 PKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDP 196
P R+ K +P G G + P D + + D CL+Q+ A+ ++ A++ D
Sbjct: 125 PWRYRNKSQIP-FGTQNGKVVAGFYQPRSHD-IADTDTCLIQTPEADAIMVALKKNLID- 181
Query: 197 QLGLSPYDVHSHSGFLKHLMLR----TGSFMIC 225
+G+ PY+ +H G L+H+++R TG M+
Sbjct: 182 -MGIEPYEEATHRGMLRHVVVRKARATGEIMVV 213
>gi|28211569|ref|NP_782513.1| tRNA (uracil-5-) -methyltransferase [Clostridium tetani E88]
gi|50401760|sp|Q892Z2.1|Y1941_CLOTE RecName: Full=Uncharacterized RNA methyltransferase CTC_01941
gi|28204010|gb|AAO36450.1| tRNA (uracil-5-) -methyltransferase [Clostridium tetani E88]
Length = 456
Score = 44.3 bits (103), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 18/99 (18%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEF+FG L K G+ LG+HA G +++ D+C + E +L A
Sbjct: 129 KMEFTFG--------DLKKGGE----LNLGMHAKGMSFGIISADECKIVDEDYRNILNAT 176
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMI 224
+Y+R+ Q L Y + + G+L++L++R TG ++
Sbjct: 177 LNYFREKQ--LPHYRIMAREGYLRNLVIRKAENTGEVLV 213
>gi|205372478|ref|ZP_03225291.1| RNA methyltransferase-like protein [Bacillus coahuilensis m4-4]
Length = 456
Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 38/61 (62%), Gaps = 6/61 (9%)
Query: 164 GFFDK----VLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRT 219
GFF K ++++ C++Q + + V+ V+D ++ + G+ PYD H G ++H+M+RT
Sbjct: 149 GFFAKGSHEIVDMPYCIIQHKKNDEVVQLVKDSFK--KYGIQPYDEEKHQGVVRHVMVRT 206
Query: 220 G 220
G
Sbjct: 207 G 207
>gi|225571369|ref|ZP_03780365.1| hypothetical protein CLOHYLEM_07467 [Clostridium hylemonae DSM
15053]
gi|225159845|gb|EEG72464.1| hypothetical protein CLOHYLEM_07467 [Clostridium hylemonae DSM
15053]
Length = 475
Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 137 PKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDP 196
P R+ K P D N G +A + ++D C + +L + + +
Sbjct: 130 PYRYRNKAQFPVGTDREGNIITGFYAGRTHQIIPHMD-CAIGRAENKEILNIIISFMK-- 186
Query: 197 QLGLSPYDVHSHSGFLKHLML----RTGSFMICAPV 228
+ GLSPYD SH G ++H+++ RTG M+C +
Sbjct: 187 EFGLSPYDETSHKGLIRHILIRTGYRTGEIMVCIVI 222
>gi|301089440|ref|XP_002895021.1| RNA methyltransferase [Phytophthora infestans T30-4]
gi|262104003|gb|EEY62055.1| RNA methyltransferase [Phytophthora infestans T30-4]
Length = 545
Score = 44.3 bits (103), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 168 KVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
++L++++CLLQ+ N +L Q R +GL YD ++H GFLK ++LR G
Sbjct: 188 RILSLNECLLQASACNRLLQ--QLVARCEDVGLQAYDFNTHEGFLKQIVLRRG 238
>gi|386394377|ref|ZP_10079158.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Desulfovibrio sp. U5L]
gi|385735255|gb|EIG55453.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Desulfovibrio sp. U5L]
Length = 449
Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 79 GQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAE 130
G ELEL + LA+ GKGV + G VV DR LPG +V R K +AE
Sbjct: 6 GMELELAVDRLAFGGKGVAR--QDGLVVFVDRGLPGATVRAKVERVKKGFAE 55
>gi|385800336|ref|YP_005836740.1| (uracil-5)-methyltransferase [Halanaerobium praevalens DSM 2228]
gi|309389700|gb|ADO77580.1| (Uracil-5)-methyltransferase [Halanaerobium praevalens DSM 2228]
Length = 389
Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 14/90 (15%)
Query: 131 MEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQ 190
MEFSFG K+G ++ LG+H G V+ +D+CLL + +L+ +
Sbjct: 64 MEFSFGD---------LKKGGKLQ---LGMHPRGKRFDVITVDQCLLVDQDFRNILSTIL 111
Query: 191 DYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
+Y R + Y + +GFL++L++R G
Sbjct: 112 NYCRKNE--FKKYHIKLRTGFLRNLVIRKG 139
>gi|404481845|ref|ZP_11017075.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridiales
bacterium OBRC5-5]
gi|404345149|gb|EJZ71503.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridiales
bacterium OBRC5-5]
Length = 475
Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 53/99 (53%), Gaps = 18/99 (18%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSFG ++ K GD ALG+H G ++N+ +C + +L
Sbjct: 128 KMEFSFGDEQ--------KDGD----LALGMHKRGSHYDIVNVFECKIVDSDFTKILELT 175
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMI 224
+++++ ++ S + +SH+GFL+HL++R TG ++
Sbjct: 176 LNFFKERKV--SYFHKNSHTGFLRHLLIRRSEYTGEILV 212
>gi|289422763|ref|ZP_06424602.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptostreptococcus
anaerobius 653-L]
gi|289156818|gb|EFD05444.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptostreptococcus
anaerobius 653-L]
Length = 452
Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 157 ALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLM 216
+LG+H G F ++ +D C + + ++ +D++ + GL Y +H G+L+HL+
Sbjct: 142 SLGMHKVGRFIDIVTVDDCRIVDQDFKTIMTRTRDFFEEK--GLPYYRSFNHQGYLRHLV 199
Query: 217 LRTGS 221
+R G
Sbjct: 200 VRKGE 204
>gi|28212064|ref|NP_783008.1| tRNA (uracil-5-) -methyltransferase [Clostridium tetani E88]
gi|50401759|sp|Q891A0.1|Y2481_CLOTE RecName: Full=Uncharacterized RNA methyltransferase CTC_02481
gi|28204507|gb|AAO36945.1| tRNA (uracil-5-) -methyltransferase [Clostridium tetani E88]
Length = 460
Score = 44.3 bits (103), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 11/110 (10%)
Query: 123 RKKGSYAEMEFSFG---PKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQS 179
R G E+E G P R+ K LP G +G +AP + ++++ C +Q
Sbjct: 110 RLGGIDVEVEEVLGMENPYRYRNKVQLP-IGKEKGKVNIGFYAPRSHN-IIDLKSCFIQD 167
Query: 180 EPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLML----RTGSFMIC 225
E A+ ++ ++++ + +S YD H G L+H+M+ RTG MI
Sbjct: 168 EKADKIIKILKEWIE--KFNVSIYDEKEHKGNLRHIMVRTAFRTGQIMIV 215
>gi|397905381|ref|ZP_10506237.1| RNA methyltransferase, TrmA family [Caloramator australicus RC3]
gi|397161446|emb|CCJ33571.1| RNA methyltransferase, TrmA family [Caloramator australicus RC3]
Length = 481
Score = 43.9 bits (102), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 8/93 (8%)
Query: 137 PKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDP 196
P R+ K LP R ++ E +G G D V+++ +C +Q E A+ V+ +++
Sbjct: 150 PLRYRNKVQLPVRRENGE-VKIGFFKQGTHD-VIDVRECFIQDEIADKVVNLTREWIN-- 205
Query: 197 QLGLSPYDVHSHSGFLKHLMLR----TGSFMIC 225
+ + PYD + SG ++H+M+R TG M+
Sbjct: 206 KYNIEPYDETNGSGIVRHIMIRKAFATGEVMVV 238
>gi|317495762|ref|ZP_07954125.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gemella morbillorum
M424]
gi|316913939|gb|EFV35422.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Gemella morbillorum
M424]
Length = 537
Score = 43.9 bits (102), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 158 LGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLML 217
+G + P D V+NI+KC +Q + N ++ ++ +L LS YD SH G ++H+M
Sbjct: 138 MGYYKPRSHD-VINIEKCFIQYDEHNKLMNDIRSLI--IELDLSVYDEVSHKGAIRHIMF 194
Query: 218 RTGS 221
RT S
Sbjct: 195 RTNS 198
>gi|225027843|ref|ZP_03717035.1| hypothetical protein EUBHAL_02103 [Eubacterium hallii DSM 3353]
gi|224954790|gb|EEG35999.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacterium hallii DSM
3353]
Length = 560
Score = 43.9 bits (102), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 51/104 (49%), Gaps = 18/104 (17%)
Query: 125 KGSYAEMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANL 184
+G +MEF+FG + K G ALG+H F ++ +D C + N+
Sbjct: 139 EGYRNKMEFTFGDEE--------KDGP----LALGMHKKNSFYDIVTLDDCRIVDPDFNV 186
Query: 185 VLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMI 224
+L A+ Y+++ G + + H GFL+HL++R TG +I
Sbjct: 187 LLQAILKYFKEK--GETYFHKIRHEGFLRHLVMRRSVKTGDILI 228
>gi|422416268|ref|ZP_16493225.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria innocua FSL
J1-023]
gi|313623370|gb|EFR93595.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria innocua FSL
J1-023]
Length = 453
Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 44/211 (20%), Positives = 78/211 (36%), Gaps = 67/211 (31%)
Query: 78 RGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTR--KKGSYAEME--- 132
+ Q +EL E+L + G GV K+ G+ + LPGEK ++T+ K +A ME
Sbjct: 8 KNQSVELTIENLTHDGSGVGKI--DGYPLFIPNALPGEKITAKITKLNKNYGFARMENIE 65
Query: 133 ------------------------FSFGPKRWFPKESLPKRGDHIENY------ALGLHA 162
S+ + F + + + I LG+
Sbjct: 66 VVSAERVEPPCAVYSKCGGCSLQHLSYDGQLAFKRNQVEETMKRIGKLNVEVPETLGMEN 125
Query: 163 P--------------------GFFDK----VLNIDKCLLQSEPANLVLAAVQDYWRDPQL 198
P GF+ K ++++ CL+ +E ++ + ++ +
Sbjct: 126 PWRYRNKSQVPVGFVNGKLTAGFYQKRSHDIIDMSTCLIHNEKGDVAVQKTREIL--AKY 183
Query: 199 GLSPYDVHSHSGFLKHLMLR----TGSFMIC 225
G PYD + G ++H+M R TG MI
Sbjct: 184 GTEPYDEKTGKGDIRHIMTRFAHTTGQLMIV 214
>gi|225568809|ref|ZP_03777834.1| hypothetical protein CLOHYLEM_04888 [Clostridium hylemonae DSM
15053]
gi|225162308|gb|EEG74927.1| hypothetical protein CLOHYLEM_04888 [Clostridium hylemonae DSM
15053]
Length = 460
Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 18/99 (18%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSFG + K G ALG+H G F ++N+ C + E +LA
Sbjct: 129 KMEFSFGDEY--------KDG----PLALGMHKRGSFHDIVNVADCRIVDEDYRKILACT 176
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMI 224
D + + GL Y H+GF +HL++R TG +I
Sbjct: 177 LDCAK--KSGLPYYHRMKHTGFFRHLLVRKAVNTGEILI 213
>gi|348678272|gb|EGZ18089.1| hypothetical protein PHYSODRAFT_498294 [Phytophthora sojae]
Length = 541
Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 5/83 (6%)
Query: 141 FPKESLPKRGD---HIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQ 197
FP S+ R H ++ A A + ++L++++CLLQ N +L + D
Sbjct: 160 FPVASVSARRSKQVHGKSKARRRRAAVWSPRILSLNECLLQGSACNRLLQQLVTRCEDA- 218
Query: 198 LGLSPYDVHSHSGFLKHLMLRTG 220
GL YD SH GFLK ++LR G
Sbjct: 219 -GLEAYDFTSHEGFLKQIVLRRG 240
>gi|429728481|ref|ZP_19263202.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptostreptococcus
anaerobius VPI 4330]
gi|429149594|gb|EKX92571.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Peptostreptococcus
anaerobius VPI 4330]
Length = 452
Score = 43.9 bits (102), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 157 ALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLM 216
+LG+H G F ++ +D C + + ++ +D++ + GL Y +H G+L+HL+
Sbjct: 142 SLGMHKVGRFIDIVTVDDCRIVDQDFKTIMTRTRDFFEEK--GLPYYRSFNHQGYLRHLV 199
Query: 217 LRTGS 221
+R G
Sbjct: 200 VRKGE 204
>gi|379013332|ref|YP_005271144.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acetobacterium woodii
DSM 1030]
gi|375304121|gb|AFA50255.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Acetobacterium woodii
DSM 1030]
Length = 450
Score = 43.9 bits (102), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 44/97 (45%), Gaps = 14/97 (14%)
Query: 126 GSYAEMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLV 185
G +ME+SFG K G + LGLH G F ++ D C + N +
Sbjct: 122 GYRNKMEYSFGDNE--------KDGPLM----LGLHEQGSFYNIVQTDHCQITDADFNQI 169
Query: 186 LAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGSF 222
AV Y+ Q G + SH GFL+HL++R G +
Sbjct: 170 QKAVLAYF--VQTGDCYFHKRSHEGFLRHLVVRKGKY 204
>gi|421191960|ref|ZP_15649230.1| tRNA (uracil-5-)-methyltransferase related enzyme [Oenococcus oeni
AWRIB548]
gi|399970781|gb|EJO05072.1| tRNA (uracil-5-)-methyltransferase related enzyme [Oenococcus oeni
AWRIB548]
Length = 458
Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
Query: 73 YFKPIRGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAEME 132
Y K ++ QEL L YKG GV KV D F V LPGE+ +TR SYA
Sbjct: 6 YSKLVKNQELTGDVIDLTYKGLGVVKVDD--FPVFIVNSLPGERIKFAITRVLNSYA--- 60
Query: 133 FSFGPKRWFPKESLPK-RGDHIENYALGL 160
FG KES + R DH E A G+
Sbjct: 61 --FGRVLGIIKESPDRVRADHPEMIASGI 87
>gi|315925903|ref|ZP_07922108.1| 23S rRNA (uracil-5-)-methyltransferase [Pseudoramibacter
alactolyticus ATCC 23263]
gi|315620724|gb|EFV00700.1| 23S rRNA (uracil-5-)-methyltransferase [Pseudoramibacter
alactolyticus ATCC 23263]
Length = 464
Score = 43.9 bits (102), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 14/92 (15%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSFG P L LGLH G F +++ C L ++ AV
Sbjct: 131 KMEFSFGDD--CPGGPL----------MLGLHEKGHFYNIVSAQDCALAHPDFGAIVTAV 178
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
DY+R G + +H+GFL++L++R G+
Sbjct: 179 LDYFR--SRGAQAFHKRAHTGFLRYLVVRRGA 208
>gi|314934062|ref|ZP_07841425.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus caprae
C87]
gi|313653173|gb|EFS16932.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus caprae
C87]
Length = 455
Score = 43.9 bits (102), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 11/88 (12%)
Query: 137 PKRWFPKESLPKRGDHIENYALGLHAPGFFDK----VLNIDKCLLQSEPANLVLAAVQDY 192
P R+ K +P D EN A+ GF+ + ++++D CL+Q E ++ V+ +
Sbjct: 125 PWRYRNKSQIPVGKDK-ENKAI----TGFYRQRSHDIIDMDSCLIQDEQHQKIMNHVKQW 179
Query: 193 WRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
+ L +S Y+ + SG ++HL++RTG
Sbjct: 180 LNE--LNISIYNEKNQSGLMRHLVVRTG 205
>gi|336396255|ref|ZP_08577654.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus farciminis KCTC
3681]
Length = 452
Score = 43.9 bits (102), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 29/77 (37%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Query: 78 RGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAEMEFSFGP 137
+ QE+EL E L+Y+GKGV KV D F + D LP E +TR F F
Sbjct: 8 KNQEIELNIEDLSYEGKGVAKVDD--FTLFVDNALPNETVKAVITR-----VNKNFGFAR 60
Query: 138 KRWFPKESLPKRGDHIE 154
KES P R I+
Sbjct: 61 TLEVLKES-PDRVHDID 76
>gi|374322253|ref|YP_005075382.1| RNA methyltransferase, trma family protein [Paenibacillus terrae
HPL-003]
gi|357201262|gb|AET59159.1| RNA methyltransferase, trma family protein [Paenibacillus terrae
HPL-003]
Length = 558
Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 12/74 (16%)
Query: 156 YALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHL 215
YA G H +++++D CL+Q E + V+A V++ R LG+S Y+ + G L+H+
Sbjct: 250 YARGSH------RIVDMDTCLIQDERNDEVVARVKEIGR--VLGISAYNEETGRGLLRHV 301
Query: 216 ML----RTGSFMIC 225
++ RTG M+
Sbjct: 302 VVKTAFRTGEMMLV 315
>gi|16800929|ref|NP_471197.1| hypothetical protein lin1863 [Listeria innocua Clip11262]
gi|422413292|ref|ZP_16490251.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria innocua FSL
S4-378]
gi|423098459|ref|ZP_17086228.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria innocua ATCC
33091]
gi|50401774|sp|Q92AQ7.1|Y1863_LISIN RecName: Full=Uncharacterized RNA methyltransferase lin1863
gi|16414364|emb|CAC97093.1| lin1863 [Listeria innocua Clip11262]
gi|313618389|gb|EFR90415.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria innocua FSL
S4-378]
gi|370795125|gb|EHN62855.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria innocua ATCC
33091]
Length = 453
Score = 43.9 bits (102), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 44/211 (20%), Positives = 77/211 (36%), Gaps = 67/211 (31%)
Query: 78 RGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTR--KKGSYAEME--- 132
+ Q +EL E L + G GV K+ G+ + LPGEK ++T+ K +A ME
Sbjct: 8 KNQSVELTIEDLTHDGSGVGKI--DGYPLFIPNALPGEKITAKITKLNKNYGFARMENIE 65
Query: 133 ------------------------FSFGPKRWFPKESLPKRGDHIENY------ALGLHA 162
S+ + F + + + I LG+
Sbjct: 66 VVSAERVEPPCAVYSKCGGCSLQHLSYDGQLAFKRNQVEETMKRIGKLNVEVPDTLGMEN 125
Query: 163 P--------------------GFFDK----VLNIDKCLLQSEPANLVLAAVQDYWRDPQL 198
P GF+ K ++++ CL+ +E ++ + ++ +
Sbjct: 126 PWRYRNKSQVPVGFVNGKLTAGFYQKRSHDIIDMSTCLIHNEKGDVAVQKTREIL--AKY 183
Query: 199 GLSPYDVHSHSGFLKHLMLR----TGSFMIC 225
G PYD + G ++H+M R TG MI
Sbjct: 184 GTEPYDEKTGKGDIRHIMTRFAHTTGQLMIV 214
>gi|150391401|ref|YP_001321450.1| RNA methyltransferase [Alkaliphilus metalliredigens QYMF]
gi|149951263|gb|ABR49791.1| RNA methyltransferase, TrmA family [Alkaliphilus metalliredigens
QYMF]
Length = 451
Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 48/97 (49%), Gaps = 14/97 (14%)
Query: 126 GSYAEMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLV 185
G +MEFSFG + ++G + LG+H G ++ +D+CL+ E +
Sbjct: 124 GYRNKMEFSFGDE---------EKGGPL---TLGMHKRGKHHDIVTVDQCLIMDEDFRSI 171
Query: 186 LAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGSF 222
L + ++++ Q + Y H G+L+HL++R +
Sbjct: 172 LTVILEFFK--QREIPHYSSTRHEGYLRHLVVRKAHY 206
>gi|145340698|ref|XP_001415457.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144575680|gb|ABO93749.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 536
Score = 43.5 bits (101), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 79 GQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVT--RKK 125
G E+ + C A G+GVCK+A+ G V+LCD PGE RVT RKK
Sbjct: 54 GDEVSVECVDFATSGEGVCKLAN-GMVLLCDGATPGEVVRARVTKLRKK 101
>gi|379724436|ref|YP_005316567.1| RNA methyltransferase [Paenibacillus mucilaginosus 3016]
gi|378573108|gb|AFC33418.1| RNA methyltransferase [Paenibacillus mucilaginosus 3016]
Length = 501
Score = 43.5 bits (101), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 9/95 (9%)
Query: 137 PKRWFPKESLPKRGDHIENYAL--GLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWR 194
P R+ K +P E L G +A G ++++++ CL+Q E + V+ AV+ R
Sbjct: 165 PWRYRNKAQVPIGLAETEEGGLVGGFYAQGSH-RIIDMEACLIQHENNDAVVGAVKKIAR 223
Query: 195 DPQLGLSPYDVHSHSGFLKHLMLR----TGSFMIC 225
+LG+ PY + G L+H++ R TG M+
Sbjct: 224 --ELGIRPYSEETGRGLLRHVIARYGFNTGEIMVV 256
>gi|418325968|ref|ZP_12937165.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU071]
gi|365226999|gb|EHM68207.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU071]
Length = 456
Score = 43.5 bits (101), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 70/154 (45%), Gaps = 17/154 (11%)
Query: 79 GQELELVCES--------LAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRK----KG 126
G+ +E++ ES + Y G C++ + D + E+ + RK
Sbjct: 57 GKLIEVISESDDRVTPPCIYYAKCGGCQLQHMTYRAQLD--MKKEQVVNLFHRKGPFENT 114
Query: 127 SYAEMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVL 186
+ E P R+ K +P + +G + D ++++D CL+Q + V+
Sbjct: 115 AIKETIGMVNPWRYRNKSQIPVGQSNSNQVIMGFYRQRSHD-IIDMDSCLIQDKQHQEVM 173
Query: 187 AAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
V+ YW + +L +S Y+ + +G ++HL++RTG
Sbjct: 174 NRVK-YWLN-ELNISIYNEKTKTGLIRHLVVRTG 205
>gi|163847509|ref|YP_001635553.1| (uracil-5)-methyltransferase [Chloroflexus aurantiacus J-10-fl]
gi|222525358|ref|YP_002569829.1| (uracil-5)-methyltransferase [Chloroflexus sp. Y-400-fl]
gi|163668798|gb|ABY35164.1| (Uracil-5)-methyltransferase [Chloroflexus aurantiacus J-10-fl]
gi|222449237|gb|ACM53503.1| (Uracil-5)-methyltransferase [Chloroflexus sp. Y-400-fl]
Length = 399
Score = 43.5 bits (101), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 159 GLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDP-QLGLSPYDVHSHSGFLKHLML 217
GL A G F+ ++ + C L A AA Q WR LGL YDV +H+GFL+++++
Sbjct: 93 GLRARGKFNYIIELTTCHLIPPTA---FAAAQAVWRHALDLGLPDYDVRTHTGFLRYVVV 149
Query: 218 R 218
R
Sbjct: 150 R 150
>gi|291549934|emb|CBL26196.1| 23S rRNA m(5)U-1939 methyltransferase [Ruminococcus torques L2-14]
Length = 456
Score = 43.5 bits (101), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 14/92 (15%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSFG + F L +LGLH G VL C L E + +L V
Sbjct: 130 KMEFSFGDE--FKDGPL----------SLGLHKKGSTYDVLTAGDCQLVHEDMDKILLCV 177
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+Y+++ +S Y H G+L+HL+LR G
Sbjct: 178 LNYFKERN--VSYYKKMQHVGYLRHLLLRRGD 207
>gi|219848732|ref|YP_002463165.1| (uracil-5)-methyltransferase [Chloroflexus aggregans DSM 9485]
gi|219542991|gb|ACL24729.1| (Uracil-5)-methyltransferase [Chloroflexus aggregans DSM 9485]
Length = 398
Score = 43.5 bits (101), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 158 LGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYW-RDPQLGLSPYDVHSHSGFLKHLM 216
GL A G F+ ++ + C L A AA + W R +LG++ YD+ +H+GFL++++
Sbjct: 93 FGLRARGKFNYIIELTTCHLIPPTA---FAAARAVWQRAGELGIADYDIRTHTGFLRYIV 149
Query: 217 LR 218
+R
Sbjct: 150 VR 151
>gi|168185623|ref|ZP_02620258.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
C str. Eklund]
gi|169296454|gb|EDS78587.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
C str. Eklund]
Length = 472
Score = 43.5 bits (101), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Query: 137 PKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDP 196
P R+ K LP G+ +G +AP D +++++ C +Q E + V++ ++++ +
Sbjct: 144 PYRYRNKVQLP-VGEENGEIKVGFYAPRSHD-IIDMEICHIQDEVGDTVVSLIKEWMK-- 199
Query: 197 QLGLSPYDVHSHSGFLKHLMLRTG 220
+ + PY+ ++G ++H+M+R G
Sbjct: 200 KYNIKPYNEQKNTGLVRHIMVRRG 223
>gi|312144062|ref|YP_003995508.1| (uracil-5)-methyltransferase [Halanaerobium hydrogeniformans]
gi|311904713|gb|ADQ15154.1| (Uracil-5)-methyltransferase [Halanaerobium hydrogeniformans]
Length = 389
Score = 43.5 bits (101), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 14/90 (15%)
Query: 131 MEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQ 190
MEFSFG K+G ++ LG+H G V+ +D C+L + +L +
Sbjct: 66 MEFSFGD---------LKKGGKLQ---LGMHPRGKRYDVVTVDSCILVDQDFRKILNIII 113
Query: 191 DYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
DY R+ Y V GFL++L++R G
Sbjct: 114 DYCREN--NFKKYHVKLREGFLRNLVIRKG 141
>gi|291556144|emb|CBL33261.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacterium siraeum
V10Sc8a]
Length = 474
Score = 43.5 bits (101), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 169 VLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
++ ID C+L + A+ ++ ++D R L PYD + GFL+H+++R G
Sbjct: 83 IVGIDSCMLDDKRADEIIVGIRDLLR--SFKLHPYDEGTERGFLRHVLVRVG 132
>gi|359414932|ref|ZP_09207397.1| RNA methyltransferase, TrmA family [Clostridium sp. DL-VIII]
gi|357173816|gb|EHJ01991.1| RNA methyltransferase, TrmA family [Clostridium sp. DL-VIII]
Length = 452
Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 18/99 (18%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEF+FG + +G E +LG+H G +L +D+C L E ++
Sbjct: 127 KMEFTFGDE---------AKG---EPLSLGMHMRGKSFGILTVDECKLVDEDYRKIIKLT 174
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMI 224
DY+R ++ L Y V G+L+HL++R TG ++
Sbjct: 175 VDYFR--KMDLPYYKVMKAEGYLRHLVIRKAQNTGEILV 211
>gi|167750213|ref|ZP_02422340.1| hypothetical protein EUBSIR_01187 [Eubacterium siraeum DSM 15702]
gi|167656775|gb|EDS00905.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacterium siraeum
DSM 15702]
Length = 383
Score = 43.5 bits (101), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 169 VLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
++ ID C+L + A+ ++ ++D R L PYD + GFL+H+++R G
Sbjct: 83 IVGIDSCMLDDKRADEIIVGIRDLLR--SFKLHPYDEGTERGFLRHVLVRVG 132
>gi|418413115|ref|ZP_12986359.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis BVS058A4]
gi|410879404|gb|EKS27251.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis BVS058A4]
Length = 472
Score = 43.5 bits (101), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 70/154 (45%), Gaps = 17/154 (11%)
Query: 79 GQELELVCES--------LAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRK----KG 126
G+ +E++ ES + Y G C++ + D + E+ + RK
Sbjct: 73 GKLIEVISESDDRVTPPCIYYAKCGGCQLQHMTYRAQLD--MKKEQVVNLFHRKGPFENT 130
Query: 127 SYAEMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVL 186
+ E P R+ K +P + +G + D ++++D CL+Q + V+
Sbjct: 131 AIKETIGMVNPWRYRNKSQIPVGQSNSNQVIMGFYRQRSHD-IIDMDSCLIQDKQHQEVM 189
Query: 187 AAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
V+ YW + +L +S Y+ + +G ++HL++RTG
Sbjct: 190 NRVK-YWLN-ELNISIYNEKTKTGLIRHLVVRTG 221
>gi|420164219|ref|ZP_14670951.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM095]
gi|420169056|ref|ZP_14675661.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM087]
gi|420186107|ref|ZP_14692181.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM040]
gi|394232229|gb|EJD77847.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM095]
gi|394232358|gb|EJD77975.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM087]
gi|394252811|gb|EJD97834.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM040]
Length = 456
Score = 43.5 bits (101), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 69/154 (44%), Gaps = 17/154 (11%)
Query: 79 GQELELVCES--------LAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRK----KG 126
G+ +E++ ES + Y G C++ + D + E+ + RK
Sbjct: 57 GKLIEVISESDDRVTPPCIYYAKCGGCQLQHMTYRAQLD--MKKEQVVNLFHRKGPFENT 114
Query: 127 SYAEMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVL 186
+ E P R+ K +P + +G + D ++++D CL+Q V+
Sbjct: 115 AIKETIGMVNPWRYRNKSQIPVGQSNSNQVIMGFYRQRSHD-IIDMDSCLIQDRQHQEVM 173
Query: 187 AAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
V+ YW + +L +S Y+ + +G ++HL++RTG
Sbjct: 174 NRVK-YWLN-ELNISIYNEKTKTGLIRHLVVRTG 205
>gi|255305404|ref|ZP_05349576.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile
ATCC 43255]
Length = 451
Score = 43.5 bits (101), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 150 GDHIEN--YALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHS 207
GD ++N LGLH G + +++C+L E + +LA+ +++ + + L Y +
Sbjct: 133 GDEVKNGPLTLGLHKKGKHIDIQTVEECMLVDEDFSKILASSVEFFDEKK--LPYYRTMN 190
Query: 208 HSGFLKHLMLRTG 220
H G+L+HL++R G
Sbjct: 191 HKGYLRHLVVRKG 203
>gi|386727175|ref|YP_006193501.1| RNA methyltransferase [Paenibacillus mucilaginosus K02]
gi|384094300|gb|AFH65736.1| RNA methyltransferase [Paenibacillus mucilaginosus K02]
Length = 442
Score = 43.5 bits (101), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 9/95 (9%)
Query: 137 PKRWFPKESLPKRGDHIENYAL--GLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWR 194
P R+ K +P E L G +A G ++++++ CL+Q E + V+ AV+ R
Sbjct: 106 PWRYRNKAQVPIGLAETEEGGLVGGFYAQGSH-RIIDMEACLIQHENNDAVVGAVKKIAR 164
Query: 195 DPQLGLSPYDVHSHSGFLKHLMLR----TGSFMIC 225
+LG+ PY + G L+H++ R TG M+
Sbjct: 165 --ELGIRPYSEETGRGLLRHVIARYGFNTGEIMVV 197
>gi|375307085|ref|ZP_09772375.1| RNA methyltransferase, TrmA family protein, partial [Paenibacillus
sp. Aloe-11]
gi|375080803|gb|EHS59021.1| RNA methyltransferase, TrmA family protein, partial [Paenibacillus
sp. Aloe-11]
Length = 373
Score = 43.5 bits (101), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 12/74 (16%)
Query: 156 YALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHL 215
YA G H +++++D CL+Q E + V+A V++ R LG+S Y+ + G L+H+
Sbjct: 64 YARGSH------RIVDMDTCLIQDERNDEVVARVKEIGR--MLGISAYNEETGRGLLRHV 115
Query: 216 ML----RTGSFMIC 225
++ RTG M+
Sbjct: 116 VVKTAFRTGEMMLV 129
>gi|421873815|ref|ZP_16305425.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Brevibacillus
laterosporus GI-9]
gi|372457155|emb|CCF14974.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Brevibacillus
laterosporus GI-9]
Length = 550
Score = 43.5 bits (101), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 43/70 (61%), Gaps = 5/70 (7%)
Query: 154 ENYAL--GLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGF 211
EN AL G +A D +++I++CL+Q + + V+A V+ +LG+ PY+ H+G
Sbjct: 235 ENGALIGGFYAEKSHD-IIDINECLIQHQANDEVVATVKRIAE--RLGIEPYNEVKHTGL 291
Query: 212 LKHLMLRTGS 221
L+H++ + G+
Sbjct: 292 LRHVVAKVGA 301
>gi|337751469|ref|YP_004645631.1| RNA methyltransferase [Paenibacillus mucilaginosus KNP414]
gi|336302658|gb|AEI45761.1| Uncharacterized RNA methyltransferase [Paenibacillus mucilaginosus
KNP414]
Length = 442
Score = 43.5 bits (101), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 9/95 (9%)
Query: 137 PKRWFPKESLPKRGDHIENYAL--GLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWR 194
P R+ K +P E L G +A G ++++++ CL+Q E + V+ AV+ R
Sbjct: 106 PWRYRNKAQVPIGLAETEEGGLVGGFYAQGSH-RIIDMEACLIQHENNDAVVGAVKKIAR 164
Query: 195 DPQLGLSPYDVHSHSGFLKHLMLR----TGSFMIC 225
+LG+ PY + G L+H++ R TG M+
Sbjct: 165 --ELGIRPYSEETGRGLLRHVIARYGFNTGEIMVV 197
>gi|153939426|ref|YP_001392140.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
F str. Langeland]
gi|384463128|ref|YP_005675723.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
F str. 230613]
gi|152935322|gb|ABS40820.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
F str. Langeland]
gi|295320145|gb|ADG00523.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
F str. 230613]
Length = 453
Score = 43.1 bits (100), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 18/99 (18%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEF+FG + K GD LG+H ++ +D C + +L V
Sbjct: 127 KMEFTFG--------DMEKGGD----LTLGMHVKNRNFSIVTVDNCEIVDRDFRNILTTV 174
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMI 224
+Y+ + +L Y V SH GFL++L++R TG +I
Sbjct: 175 VNYFNEKRL--PKYRVMSHEGFLRNLVIRKAKNTGEILI 211
>gi|440780726|ref|ZP_20959197.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
pasteurianum DSM 525]
gi|440221314|gb|ELP60519.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
pasteurianum DSM 525]
Length = 454
Score = 43.1 bits (100), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 18/99 (18%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSFG + +L G HI N A G ++N+ +C L S+ ++L V
Sbjct: 127 KMEFSFGDVEKGGELTL---GMHIRNKAFG---------IVNVHECTLVSKDFRVILDTV 174
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMI 224
+Y+RD + Y + G+L++L++R TG ++
Sbjct: 175 VNYFRDKN--TTYYRIMKREGYLRNLVIRETEHTGEILV 211
>gi|335050256|ref|ZP_08543230.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Megasphaera sp. UPII
199-6]
gi|333757587|gb|EGL35147.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Megasphaera sp. UPII
199-6]
Length = 461
Score = 43.1 bits (100), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Query: 137 PKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDP 196
P + K P D ++G A + V+N++ C++Q E N ++ V+ + +D
Sbjct: 130 PWNYRNKMQFPVGEDKKNTLSIGCFAAATHN-VINVENCVIQKEENNQIVRIVRQWMKD- 187
Query: 197 QLGLSPYDVHSHSGFLKHLM----LRTGSFMIC 225
+ YD +G ++H+M ++TG M+C
Sbjct: 188 -FKIPAYDEDKCTGMIRHIMGRVGVKTGEIMVC 219
>gi|168179294|ref|ZP_02613958.1| 23S rRNA -methyltransferase RumA [Clostridium botulinum NCTC 2916]
gi|182669610|gb|EDT81586.1| 23S rRNA -methyltransferase RumA [Clostridium botulinum NCTC 2916]
Length = 450
Score = 43.1 bits (100), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 18/99 (18%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEF+FG + K GD LG+H ++ +D C + +L V
Sbjct: 127 KMEFTFG--------DMEKGGD----LTLGMHVKNRNFSIVTVDNCEIVDRDFRNILTTV 174
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMI 224
+Y+ + +L Y V SH GFL++L++R TG +I
Sbjct: 175 VNYFNEKRL--PKYRVMSHEGFLRNLVIRKAKNTGEILI 211
>gi|421838985|ref|ZP_16272678.1| 23S rRNA (uracil-5-)-methyltransferase RumA, partial [Clostridium
botulinum CFSAN001627]
gi|409736425|gb|EKN37839.1| 23S rRNA (uracil-5-)-methyltransferase RumA, partial [Clostridium
botulinum CFSAN001627]
Length = 440
Score = 43.1 bits (100), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 18/99 (18%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEF+FG + K GD LG+H ++ +D C + +L V
Sbjct: 127 KMEFTFG--------DMEKGGD----LTLGMHVKNRNFSIVTVDNCEIVDRDFRNILTTV 174
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMI 224
+Y+ + +L Y V SH GFL++L++R TG +I
Sbjct: 175 VNYFNEKRL--PKYRVMSHEGFLRNLVIRKAKNTGEILI 211
>gi|420178620|ref|ZP_14684949.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM057]
gi|420180943|ref|ZP_14687151.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM053]
gi|394246131|gb|EJD91395.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM057]
gi|394248256|gb|EJD93496.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM053]
Length = 456
Score = 43.1 bits (100), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 136 GPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRD 195
P R+ K +P + +G + D ++++D CL+Q + V+ V+ YW +
Sbjct: 124 NPWRYRNKSQIPVGQSNSNQVIMGFYRQRSHD-IIDMDSCLIQDKQHQEVMNRVK-YWLN 181
Query: 196 PQLGLSPYDVHSHSGFLKHLMLRTG 220
+L +S Y+ + +G ++HL++RTG
Sbjct: 182 -ELNISIYNEKAKTGLIRHLVVRTG 205
>gi|15613250|ref|NP_241553.1| RNA methyltransferase [Bacillus halodurans C-125]
gi|50401684|sp|Q9KF10.1|Y687_BACHD RecName: Full=Uncharacterized RNA methyltransferase BH0687
gi|10173301|dbj|BAB04406.1| RNA methyltransferase [Bacillus halodurans C-125]
Length = 458
Score = 43.1 bits (100), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 10/70 (14%)
Query: 164 GFFD----KVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR- 218
GF+ +++++D+C++Q E + V+ V++ R +LG+ YD H G L+H++ R
Sbjct: 150 GFYQERSHRIIDMDECMIQHEENDKVIRQVKELAR--ELGIRGYDEEKHRGTLRHVVARY 207
Query: 219 ---TGSFMIC 225
TG M+
Sbjct: 208 GKNTGEIMVV 217
>gi|290968456|ref|ZP_06559995.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Megasphaera genomosp.
type_1 str. 28L]
gi|290781452|gb|EFD94041.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Megasphaera genomosp.
type_1 str. 28L]
Length = 460
Score = 43.1 bits (100), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Query: 137 PKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDP 196
P + K P D ++G A + V+N++ C++Q E N ++ V+ + +D
Sbjct: 130 PWNYRNKMQFPVGEDKKNTLSIGCFAAATHN-VINVENCVIQKEENNQIVRIVRQWMKD- 187
Query: 197 QLGLSPYDVHSHSGFLKHLM----LRTGSFMIC 225
+ YD +G ++H+M ++TG M+C
Sbjct: 188 -FKIPAYDEDKCTGMIRHIMGRVGVKTGEIMVC 219
>gi|357055866|ref|ZP_09116926.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
clostridioforme 2_1_49FAA]
gi|355381792|gb|EHG28907.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
clostridioforme 2_1_49FAA]
Length = 469
Score = 43.1 bits (100), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 22/105 (20%)
Query: 126 GSYAEMEFSFGPKRWFPKESLPKRGDHIEN--YALGLHAPGFFDKVLNIDKCLLQSEPAN 183
G +MEFSFG D +++ ALG+H G F ++ +C +
Sbjct: 125 GYRNKMEFSFG--------------DEVKDGPLALGMHKRGSFYDIVTTPECRIVHPDFC 170
Query: 184 LVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMI 224
+L A ++Y+ +LG++ Y H G+L+HL++R TG ++
Sbjct: 171 RILVATKEYFE--ELGIAFYKKLQHQGYLRHLLVRRAVKTGEILV 213
>gi|402313338|ref|ZP_10832256.1| methyltransferase domain protein [Lachnospiraceae bacterium ICM7]
gi|400366693|gb|EJP19719.1| methyltransferase domain protein [Lachnospiraceae bacterium ICM7]
Length = 475
Score = 43.1 bits (100), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 52/99 (52%), Gaps = 18/99 (18%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSFG ++ K GD ALG+H G ++N+ +C + +L
Sbjct: 128 KMEFSFGDEQ--------KDGD----LALGMHKKGSHYDIVNVFECKIVDSDFTKILELT 175
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMI 224
+++++ ++ S + +SH GFL+HL++R TG ++
Sbjct: 176 LNFFKERKV--SYFHKNSHIGFLRHLLIRRSEYTGEILV 212
>gi|417910964|ref|ZP_12554677.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU105]
gi|418622450|ref|ZP_13185201.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU123]
gi|420186796|ref|ZP_14692821.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM039]
gi|341654403|gb|EGS78149.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU105]
gi|374826840|gb|EHR90720.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU123]
gi|394257439|gb|EJE02359.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM039]
Length = 456
Score = 43.1 bits (100), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 136 GPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRD 195
P R+ K +P + +G + D ++++D CL+Q V+ V+ YW +
Sbjct: 124 NPWRYRNKSQIPVGQSNSNQVIMGFYRQRSHD-IIDMDSCLIQDRQHQEVMNRVK-YWLN 181
Query: 196 PQLGLSPYDVHSHSGFLKHLMLRTG 220
+L +S Y+ + +G ++HL++RTG
Sbjct: 182 -ELNISIYNEKTKTGLIRHLVVRTG 205
>gi|336422893|ref|ZP_08603033.1| hypothetical protein HMPREF0993_02410 [Lachnospiraceae bacterium
5_1_57FAA]
gi|336007023|gb|EGN37052.1| hypothetical protein HMPREF0993_02410 [Lachnospiraceae bacterium
5_1_57FAA]
Length = 549
Score = 43.1 bits (100), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 18/105 (17%)
Query: 124 KKGSYAEMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPAN 183
K+ +MEFSFG + K G ALG+H G F ++N+ +C + E
Sbjct: 123 KEAYRNKMEFSFGDEY--------KDGP----LALGMHKRGSFHDIVNVMECRIVDEDYR 170
Query: 184 LVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMI 224
+LA + R+ GL Y H G+ +HL++R TG +I
Sbjct: 171 KILACTLGFARET--GLPYYHRMRHIGYFRHLLVRKAVKTGEILI 213
>gi|406881326|gb|EKD29426.1| TrmA [uncultured bacterium (gcode 4)]
Length = 466
Score = 43.1 bits (100), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 9/97 (9%)
Query: 126 GSYAEMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLV 185
G ++EFS+G F + D + + G HA FD++++ C+L E N +
Sbjct: 127 GYRNKVEFSWGKYISF-------KEDIRDEFRFGFHAQWQFDRIIDCTYCVLADEEINAL 179
Query: 186 LAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGSF 222
V + R GL YD ++ GF +H ++R F
Sbjct: 180 FHEVDTFSRAS--GLPTYDPKTNIGFWRHFVVRKARF 214
>gi|334137487|ref|ZP_08510920.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Paenibacillus sp.
HGF7]
gi|333604941|gb|EGL16322.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Paenibacillus sp.
HGF7]
Length = 683
Score = 43.1 bits (100), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 8/93 (8%)
Query: 137 PKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDP 196
P R+ K +P G+ G +A G ++++++ CL+Q + V+A V++ R
Sbjct: 343 PWRYRNKAQVP-FGEEQGGLVGGFYAQGSH-RIIDMETCLIQHANNDEVIAKVKEIGRG- 399
Query: 197 QLGLSPYDVHSHSGFLKHLML----RTGSFMIC 225
LG+ Y +H G L+H+++ RTG M+
Sbjct: 400 -LGIRAYQEETHEGLLRHVVVKVGFRTGEIMVV 431
>gi|126649590|ref|ZP_01721831.1| RNA methyltransferase [Bacillus sp. B14905]
gi|126593915|gb|EAZ87838.1| RNA methyltransferase [Bacillus sp. B14905]
Length = 459
Score = 43.1 bits (100), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 45/80 (56%), Gaps = 11/80 (13%)
Query: 154 ENYALGLHAPGFFD----KVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHS 209
EN A G GF+ ++++++CL+Q+ A+ +LA ++ +G+ PY+ SH
Sbjct: 143 ENEA-GQAIAGFYKTKTHSIVDMERCLIQTGEADAILAGLKKEL--VAIGMRPYNELSHE 199
Query: 210 GFLKHLMLR----TGSFMIC 225
G L+H+++R TG M+
Sbjct: 200 GMLRHVVIRKARATGEVMVV 219
>gi|402812938|ref|ZP_10862533.1| RNA methyltransferase, TrmA family [Paenibacillus alvei DSM 29]
gi|402508881|gb|EJW19401.1| RNA methyltransferase, TrmA family [Paenibacillus alvei DSM 29]
Length = 549
Score = 43.1 bits (100), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 137 PKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDP 196
P R+ K +P + +G + ++++ D L+Q E + + AV+ R
Sbjct: 219 PWRYRNKSQMPIGKNERTGELIGGYFAKASHRIIDTDTSLIQHEMNDDAMRAVKQVVR-- 276
Query: 197 QLGLSPYDVHSHSGFLKHLMLRTG 220
+ G+ PY+ H+G L+H+M+R G
Sbjct: 277 KYGIEPYNEEQHTGLLRHVMMRVG 300
>gi|424835274|ref|ZP_18259939.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sporogenes
PA 3679]
gi|365978067|gb|EHN14162.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sporogenes
PA 3679]
Length = 459
Score = 43.1 bits (100), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 66/143 (46%), Gaps = 10/143 (6%)
Query: 82 LELVCESLAYKGKGVCKVADTGFVVLCD----RVLPGEKFIGRVTRKKGSYAEMEFSFGP 137
+E VC YK G C+V + D RV+ K IG++ K + P
Sbjct: 73 VESVCP--IYKQCGGCQVQHYSYKAQLDFKKRRVIDSLKRIGKLDIDKIKIEDTIGMENP 130
Query: 138 KRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQ 197
R+ K +P R + E +G + P + V ++ +C +Q E A+ ++ ++++ +
Sbjct: 131 YRYRNKIQMPVRFEKDE-IKIGFYRPRTHE-VADVKECFIQDEQADEIIQIIRNWM--AK 186
Query: 198 LGLSPYDVHSHSGFLKHLMLRTG 220
+S Y+ GF++H+M+R
Sbjct: 187 HNISAYNEQMGKGFIRHIMVRKA 209
>gi|355671995|ref|ZP_09058151.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium citroniae
WAL-17108]
gi|354815280|gb|EHE99873.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium citroniae
WAL-17108]
Length = 466
Score = 43.1 bits (100), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 22/106 (20%)
Query: 125 KGSYAEMEFSFGPKRWFPKESLPKRGDHIEN--YALGLHAPGFFDKVLNIDKCLLQSEPA 182
KG +MEFSFG D +++ ALG+H G F ++ +C +
Sbjct: 124 KGYRNKMEFSFG--------------DEVKDGPLALGMHKRGSFYDIVTTPECQIVHPDF 169
Query: 183 NLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMI 224
+L A ++Y+ +LG + Y H G+L+HL++R TG ++
Sbjct: 170 CRILVATKEYFE--ELGTAFYRKLQHRGYLRHLLVRRAVKTGEILV 213
>gi|168205921|ref|ZP_02631926.1| 23S rRNA -methyltransferase RumA [Clostridium perfringens E str.
JGS1987]
gi|170662572|gb|EDT15255.1| 23S rRNA -methyltransferase RumA [Clostridium perfringens E str.
JGS1987]
Length = 451
Score = 43.1 bits (100), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 14/89 (15%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+ME++FG + ++G + LG+H G ++N+DKC+L E +L
Sbjct: 127 KMEYTFGDE---------EKGGEL---TLGMHMKGKSFGIVNVDKCVLVDEDFRNILDTT 174
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR 218
Y+R+ GL Y + +G+L++L++R
Sbjct: 175 VKYFREK--GLPFYKIMPRTGYLRYLVVR 201
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 78 RGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAEMEFS 134
+G E+EL+ E + + KG V G V PG+K GRVT+K+ YAE+ S
Sbjct: 3 KGNEIELLVEGIEFPAKGFGFV--DGLKVYAKNTFPGQKVFGRVTKKRKEYAEIRVS 57
>gi|418625394|ref|ZP_13188045.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU125]
gi|374825214|gb|EHR89158.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU125]
Length = 456
Score = 43.1 bits (100), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 136 GPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRD 195
P R+ K +P + +G + D ++++D CL+Q V+ V+ YW +
Sbjct: 124 NPWRYRNKSQIPVGQSNSNQVIMGFYRQRSHD-IIDMDSCLIQDRQHQEVMNRVK-YWLN 181
Query: 196 PQLGLSPYDVHSHSGFLKHLMLRTG 220
+L +S Y+ + +G ++HL++RTG
Sbjct: 182 -ELNISIYNEKTKTGLIRHLVVRTG 205
>gi|417646469|ref|ZP_12296325.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU144]
gi|329726919|gb|EGG63377.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU144]
Length = 456
Score = 43.1 bits (100), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 136 GPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRD 195
P R+ K +P + +G + D ++++D CL+Q V+ V+ YW +
Sbjct: 124 NPWRYRNKSQIPVGQSNSNQVIMGFYRQRSHD-IIDMDSCLIQDRQHQEVMNRVK-YWLN 181
Query: 196 PQLGLSPYDVHSHSGFLKHLMLRTG 220
+L +S Y+ + +G ++HL++RTG
Sbjct: 182 -ELNISIYNEKTKTGLIRHLVVRTG 205
>gi|297528755|ref|YP_003670030.1| TrmA family RNA methyltransferase [Geobacillus sp. C56-T3]
gi|297252007|gb|ADI25453.1| RNA methyltransferase, TrmA family [Geobacillus sp. C56-T3]
Length = 457
Score = 43.1 bits (100), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 37/62 (59%), Gaps = 6/62 (9%)
Query: 164 GFFDK----VLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRT 219
GF+ + ++++D CL+Q E ++V+ V+ + G+ PYD +H G L+H++ R
Sbjct: 150 GFYKERSHEIIDMDACLIQQEKNDVVVQTVKRIAE--RYGIPPYDETTHKGVLRHIVARY 207
Query: 220 GS 221
G+
Sbjct: 208 GA 209
>gi|418606943|ref|ZP_13170204.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU057]
gi|84029598|sp|Q8CRU6.2|Y1582_STAES RecName: Full=Uncharacterized RNA methyltransferase SE_1582
gi|374406660|gb|EHQ77551.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU057]
Length = 456
Score = 43.1 bits (100), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 136 GPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRD 195
P R+ K +P + +G + D ++++D CL+Q V+ V+ YW +
Sbjct: 124 NPWRYRNKSQIPVGQSNSNQVIMGFYRQRSHD-IIDMDSCLIQDRQHQEVMNRVK-YWLN 181
Query: 196 PQLGLSPYDVHSHSGFLKHLMLRTG 220
+L +S Y+ + +G ++HL++RTG
Sbjct: 182 -ELNISIYNEKTKTGLIRHLVVRTG 205
>gi|365156601|ref|ZP_09352906.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus smithii
7_3_47FAA]
gi|363627141|gb|EHL78081.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus smithii
7_3_47FAA]
Length = 462
Score = 43.1 bits (100), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 43/201 (21%), Positives = 81/201 (40%), Gaps = 64/201 (31%)
Query: 80 QELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAEME----FSF 135
+++E+V + + ++G+GV KV + + L GEK + +VT+ SY + +
Sbjct: 15 EKIEVVFDDVTHEGQGVAKV--DSYPLFVPGALQGEKGMIQVTKINKSYGFGKILDIYEE 72
Query: 136 GPKRWFP------------------KESLPKRGDHIENY--------------ALGLHAP 163
P+R P + L + H+++ ALG+ P
Sbjct: 73 SPERMNPPCPLYHECGGCQLQHVSYEGQLKIKEKHVQDCLVRIGKITDAKVLPALGMETP 132
Query: 164 --------------------GFFDK----VLNIDKCLLQSEPANLVLAAVQDYWRDPQLG 199
GF+ K ++ +D C++Q + + + AV+D +
Sbjct: 133 WRYRNKAQVPVGQRNGKLIAGFYKKRSHEIMEMDACIIQQKQTDETIQAVKDIC--ARYR 190
Query: 200 LSPYDVHSHSGFLKHLMLRTG 220
+ PYD H G L+H+M+R G
Sbjct: 191 IRPYDEKQHKGILRHIMVRYG 211
>gi|398339763|ref|ZP_10524466.1| RNA methyltransferase [Leptospira kirschneri serovar Bim str. 1051]
Length = 454
Score = 43.1 bits (100), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 158 LGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYW-RDPQLGLSPYDVHSHSGFLKHLM 216
+G G F ++N++ CL+QSE +N L ++ + P L PYD S SGFLK+L
Sbjct: 137 VGQREAGSFRHIVNLETCLIQSEESNEELYRFRNLISKFPNL---PYDRKSDSGFLKYLT 193
Query: 217 LRTG 220
LR
Sbjct: 194 LRKA 197
>gi|282874553|ref|ZP_06283438.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis SK135]
gi|417657298|ref|ZP_12306964.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU028]
gi|417908257|ref|ZP_12552016.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU037]
gi|417912826|ref|ZP_12556508.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU109]
gi|418613412|ref|ZP_13176422.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU117]
gi|418617513|ref|ZP_13180408.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU120]
gi|418663942|ref|ZP_13225443.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU081]
gi|419768897|ref|ZP_14295000.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus IS-250]
gi|419770608|ref|ZP_14296679.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus IS-K]
gi|420171196|ref|ZP_14677743.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM070]
gi|420173310|ref|ZP_14679804.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM067]
gi|420195657|ref|ZP_14701446.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM021]
gi|420198198|ref|ZP_14703914.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM020]
gi|420202526|ref|ZP_14708117.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM018]
gi|420208101|ref|ZP_14713581.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM008]
gi|420209731|ref|ZP_14715166.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM003]
gi|420212312|ref|ZP_14717664.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM001]
gi|420215032|ref|ZP_14720305.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIH05005]
gi|420215902|ref|ZP_14721128.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIH05001]
gi|420223534|ref|ZP_14728430.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIH08001]
gi|420226092|ref|ZP_14730915.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIH06004]
gi|420228504|ref|ZP_14733255.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIH05003]
gi|420230845|ref|ZP_14735523.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIH04003]
gi|420235880|ref|ZP_14740412.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIH051475]
gi|421608738|ref|ZP_16049952.1| RNA methyltransferase [Staphylococcus epidermidis AU12-03]
gi|281296692|gb|EFA89201.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis SK135]
gi|329734822|gb|EGG71127.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU028]
gi|341656478|gb|EGS80195.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU037]
gi|341657045|gb|EGS80742.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU109]
gi|374411019|gb|EHQ81744.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU081]
gi|374815694|gb|EHR79917.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU117]
gi|374818418|gb|EHR82580.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU120]
gi|383358801|gb|EID36247.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus IS-250]
gi|383363221|gb|EID40560.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus aureus
subsp. aureus IS-K]
gi|394238379|gb|EJD83848.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM070]
gi|394240241|gb|EJD85668.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM067]
gi|394263033|gb|EJE07779.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM021]
gi|394264717|gb|EJE09389.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM020]
gi|394269276|gb|EJE13811.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM018]
gi|394274722|gb|EJE19132.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM008]
gi|394277733|gb|EJE22052.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM003]
gi|394279943|gb|EJE24237.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM001]
gi|394282662|gb|EJE26849.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIH05005]
gi|394287258|gb|EJE31222.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIH08001]
gi|394292808|gb|EJE36545.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIH06004]
gi|394293013|gb|EJE36743.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIH05001]
gi|394294767|gb|EJE38432.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIH05003]
gi|394295979|gb|EJE39612.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIH04003]
gi|394301864|gb|EJE45317.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIH051475]
gi|406655628|gb|EKC82053.1| RNA methyltransferase [Staphylococcus epidermidis AU12-03]
Length = 456
Score = 43.1 bits (100), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 136 GPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRD 195
P R+ K +P + +G + D ++++D CL+Q V+ V+ YW +
Sbjct: 124 NPWRYRNKSQIPVGQSNSNQVIMGFYRQRSHD-IIDMDSCLIQDRQHQEVMNRVK-YWLN 181
Query: 196 PQLGLSPYDVHSHSGFLKHLMLRTG 220
+L +S Y+ + +G ++HL++RTG
Sbjct: 182 -ELNISIYNEKTKTGLIRHLVVRTG 205
>gi|57867361|ref|YP_189004.1| RNA methyltransferase [Staphylococcus epidermidis RP62A]
gi|418605873|ref|ZP_13169176.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU041]
gi|418630312|ref|ZP_13192796.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU127]
gi|420166212|ref|ZP_14672899.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM088]
gi|420182002|ref|ZP_14688145.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM049]
gi|420221204|ref|ZP_14726156.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIH04008]
gi|420233294|ref|ZP_14737910.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIH051668]
gi|81674004|sp|Q5HN37.1|Y1435_STAEQ RecName: Full=Uncharacterized RNA methyltransferase SERP1435
gi|57638019|gb|AAW54807.1| RNA methyltransferase, TrmA family [Staphylococcus epidermidis
RP62A]
gi|374401106|gb|EHQ72194.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU041]
gi|374831543|gb|EHR95282.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU127]
gi|394233857|gb|EJD79447.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM088]
gi|394250675|gb|EJD95854.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM049]
gi|394285023|gb|EJE29112.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIH04008]
gi|394300351|gb|EJE43857.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIH051668]
Length = 456
Score = 42.7 bits (99), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 136 GPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRD 195
P R+ K +P + +G + D ++++D CL+Q V+ V+ YW +
Sbjct: 124 NPWRYRNKSQIPVGQSNSNQVIMGFYRQRSHD-IIDMDSCLIQDRQHQEVMNRVK-YWLN 181
Query: 196 PQLGLSPYDVHSHSGFLKHLMLRTG 220
+L +S Y+ + +G ++HL++RTG
Sbjct: 182 -ELNISIYNEKTKTGLIRHLVVRTG 205
>gi|418610373|ref|ZP_13173488.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU065]
gi|374404699|gb|EHQ75668.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU065]
Length = 456
Score = 42.7 bits (99), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 136 GPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRD 195
P R+ K +P + +G + D ++++D CL+Q V+ V+ YW +
Sbjct: 124 NPWRYRNKSQIPVGQSNSNQVIMGFYRQRSHD-IIDMDSCLIQDRQHQEVMNRVK-YWLN 181
Query: 196 PQLGLSPYDVHSHSGFLKHLMLRTG 220
+L +S Y+ + +G ++HL++RTG
Sbjct: 182 -ELNISIYNEKTKTGLIRHLVVRTG 205
>gi|421132701|ref|ZP_15592864.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Leptospira
kirschneri str. 2008720114]
gi|410355808|gb|EKP03204.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Leptospira
kirschneri str. 2008720114]
Length = 454
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 158 LGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYW-RDPQLGLSPYDVHSHSGFLKHLM 216
+G G F ++N++ CL+QSE +N L ++ + P L PYD S SGFLK+L
Sbjct: 137 VGQREAGSFRHIVNLETCLIQSEESNEELYRFRNLISKFPNL---PYDRKSDSGFLKYLT 193
Query: 217 LRTG 220
LR
Sbjct: 194 LRKA 197
>gi|406837752|ref|ZP_11097346.1| tRNA (Uracil-5-) -methyltransferase [Lactobacillus vini DSM 20605]
Length = 457
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 78 RGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYA 129
+ QELEL E L+Y+G+GV KV + + + LPGEK + V + +Y
Sbjct: 8 KNQELELTIEDLSYQGRGVAKVGH--YPLFIENALPGEKILAHVLKVSKNYG 57
>gi|422875029|ref|ZP_16921514.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
perfringens F262]
gi|380304024|gb|EIA16317.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
perfringens F262]
Length = 451
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 14/89 (15%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+ME++FG + ++G + LG+H G ++N+DKC+L E +L
Sbjct: 127 KMEYTFGDE---------EKGGEL---TLGMHMKGKSFGIVNVDKCVLVDEDFRNILDTT 174
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR 218
Y+R+ GL Y + +G+L++L++R
Sbjct: 175 VKYFREK--GLPFYKIMPRTGYLRYLVVR 201
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 78 RGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAEMEFS 134
+G E+EL+ E + + KG V G V PG+K GRVT+K+ YAE+ S
Sbjct: 3 KGNEIELLVEGIEFPAKGFGFV--DGLKVYAKNTFPGQKVFGRVTKKRKEYAEIRVS 57
>gi|187776694|ref|ZP_02993167.1| hypothetical protein CLOSPO_00209 [Clostridium sporogenes ATCC
15579]
gi|187775353|gb|EDU39155.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sporogenes
ATCC 15579]
Length = 459
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 66/141 (46%), Gaps = 10/141 (7%)
Query: 82 LELVCESLAYKGKGVCKVADTGFVVLCD----RVLPGEKFIGRVTRKKGSYAEMEFSFGP 137
+E VC YK G C+V + D RV+ K IG++ K + P
Sbjct: 73 VESVCP--IYKQCGGCQVQHYSYKAQLDFKKRRVIDSLKRIGKLDIDKIKIEDTIGMENP 130
Query: 138 KRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQ 197
R+ K +P R + E +G + P + V ++ +C +Q E A+ ++ ++++ +
Sbjct: 131 YRYRNKIQMPVRFEKDE-IKIGFYRPRTHE-VADVKECFIQDEQADKIIQIIRNWM--GK 186
Query: 198 LGLSPYDVHSHSGFLKHLMLR 218
+S Y+ GF++H+M+R
Sbjct: 187 YNISAYNEEIGKGFIRHIMVR 207
>gi|18311096|ref|NP_563030.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
perfringens str. 13]
gi|168212849|ref|ZP_02638474.1| 23S rRNA -methyltransferase RumA [Clostridium perfringens CPE str.
F4969]
gi|50401771|sp|Q8XIK5.1|Y2114_CLOPE RecName: Full=Uncharacterized RNA methyltransferase CPE2114
gi|18145779|dbj|BAB81820.1| RNA methyltransferase-like protein [Clostridium perfringens str.
13]
gi|170715477|gb|EDT27659.1| 23S rRNA -methyltransferase RumA [Clostridium perfringens CPE str.
F4969]
Length = 451
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 14/89 (15%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+ME++FG + ++G + LG+H G ++N+DKC+L E +L
Sbjct: 127 KMEYTFGDE---------EKGGEL---TLGMHMKGKSFGIVNVDKCVLVDEDFRNILDTT 174
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR 218
Y+R+ GL Y + +G+L++L++R
Sbjct: 175 VKYFREK--GLPFYKIMPRTGYLRYLVVR 201
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 78 RGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAEMEFS 134
+G E+EL+ E + + KG V G V PG+K GRVT+K+ YAE+ S
Sbjct: 3 KGNEIELLVEGIEFPAKGFGFV--DGLKVYAKNTFPGQKVFGRVTKKRKEYAEIRVS 57
>gi|417659932|ref|ZP_12309526.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU045]
gi|329734762|gb|EGG71068.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU045]
Length = 456
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 136 GPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRD 195
P R+ K +P + +G + D ++++D CL+Q V+ V+ YW +
Sbjct: 124 NPWRYRNKSQIPVGQSNSNQVIMGFYRQRSHD-IIDMDSCLIQDRQHQEVMNRVK-YWLN 181
Query: 196 PQLGLSPYDVHSHSGFLKHLMLRTG 220
+L +S Y+ + +G ++HL++RTG
Sbjct: 182 -ELNISIYNEKTKTGLIRHLVVRTG 205
>gi|289449975|ref|YP_003474465.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridiales
genomosp. BVAB3 str. UPII9-5]
gi|289184522|gb|ADC90947.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridiales
genomosp. BVAB3 str. UPII9-5]
Length = 458
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 68 SNNNDYFKPIRGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGS 127
+N N + P++ QE++++ E L ++G GV KV G+ + LP E+ R+ R +
Sbjct: 2 ANKNSLYSPVKNQEMDVIIEDLTHEGLGVAKV--NGYPLFLPDALPPERVRARIVRPLKN 59
Query: 128 YA 129
YA
Sbjct: 60 YA 61
>gi|110802049|ref|YP_699391.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
perfringens SM101]
gi|110682550|gb|ABG85920.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
perfringens SM101]
Length = 452
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 14/89 (15%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+ME++FG + ++G + LG+H G ++N+DKC+L E +L
Sbjct: 127 KMEYTFGDE---------EKGGEL---TLGMHMKGKSFGIVNVDKCVLVDEDFRNILDTT 174
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR 218
Y+R+ GL Y + +G+L++L++R
Sbjct: 175 VKYFREK--GLPFYKIMPRTGYLRYLVVR 201
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 78 RGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAEMEFS 134
+G E+EL+ E + + KG V G V PG+K GRVT+K+ YAE+ S
Sbjct: 3 KGNEIELLVEGIEFPAKGFGFV--DGLKVYAKNTFPGQKVFGRVTKKRKEYAEIRVS 57
>gi|110801335|ref|YP_696793.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
perfringens ATCC 13124]
gi|168208816|ref|ZP_02634441.1| 23S rRNA -methyltransferase RumA [Clostridium perfringens B str.
ATCC 3626]
gi|182624048|ref|ZP_02951836.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
perfringens D str. JGS1721]
gi|422346780|ref|ZP_16427694.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
perfringens WAL-14572]
gi|110675982|gb|ABG84969.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
perfringens ATCC 13124]
gi|170713002|gb|EDT25184.1| 23S rRNA -methyltransferase RumA [Clostridium perfringens B str.
ATCC 3626]
gi|177910941|gb|EDT73295.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
perfringens D str. JGS1721]
gi|373226325|gb|EHP48652.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
perfringens WAL-14572]
Length = 451
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 14/89 (15%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+ME++FG + ++G + LG+H G ++N+DKC+L E +L
Sbjct: 127 KMEYTFGDE---------EKGGEL---TLGMHMKGKSFGIVNVDKCVLVDEDFRNILDTT 174
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR 218
Y+R+ GL Y + +G+L++L++R
Sbjct: 175 VKYFREK--GLPFYKIMPRTGYLRYLVVR 201
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 78 RGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAEMEFS 134
+G E+EL+ E + + KG V G V PG+K GRVT+K+ YAE+ S
Sbjct: 3 KGNEIELLVEGIEFPAKGFGFV--DGLKVYAKNTFPGQKVFGRVTKKRKEYAEIRVS 57
>gi|118443042|ref|YP_877382.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium novyi NT]
gi|118133498|gb|ABK60542.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium novyi NT]
Length = 472
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 137 PKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDP 196
P R+ K LP G+ +G +AP D ++++D C +Q E + +++ ++ + +
Sbjct: 144 PYRYRNKVQLP-VGEENGEIKVGFYAPRSHD-IIDMDICHIQDEVGDTIVSLIKQWMK-- 199
Query: 197 QLGLSPYDVHSHSGFLKHLMLRTG 220
+ PY+ ++G ++H+M+R G
Sbjct: 200 TYNIKPYNEEKNTGIVRHIMVRRG 223
>gi|167760470|ref|ZP_02432597.1| hypothetical protein CLOSCI_02844 [Clostridium scindens ATCC 35704]
gi|167661836|gb|EDS05966.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium scindens
ATCC 35704]
Length = 460
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 18/105 (17%)
Query: 124 KKGSYAEMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPAN 183
K+ +MEFSFG + K G ALG+H G F ++N+ +C + E
Sbjct: 123 KEAYRNKMEFSFGDEY--------KDGP----LALGMHKRGSFHDIVNVMECRIVDEDYR 170
Query: 184 LVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMI 224
+LA + R + GL Y H G+ +HL++R TG +I
Sbjct: 171 KILACTLGFAR--ETGLPYYHRMRHIGYFRHLLVRKAVKTGEILI 213
>gi|293367789|ref|ZP_06614438.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis M23864:W2(grey)]
gi|291318128|gb|EFE58525.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis M23864:W2(grey)]
Length = 487
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 136 GPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRD 195
P R+ K +P + +G + D ++++D CL+Q V+ V+ YW +
Sbjct: 155 NPWRYRNKSQIPVGQSNSNQVIMGFYRQRSHD-IIDMDSCLIQDRQHQEVMNRVK-YWLN 212
Query: 196 PQLGLSPYDVHSHSGFLKHLMLRTG 220
+L +S Y+ + +G ++HL++RTG
Sbjct: 213 -ELNISIYNEKTKTGLIRHLVVRTG 236
>gi|27468500|ref|NP_765137.1| RNA methyltransferase-like protein [Staphylococcus epidermidis ATCC
12228]
gi|27316047|gb|AAO05181.1|AE016749_127 RNA methyltransferase-like protein [Staphylococcus epidermidis ATCC
12228]
Length = 472
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 136 GPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRD 195
P R+ K +P + +G + D ++++D CL+Q V+ V+ YW +
Sbjct: 140 NPWRYRNKSQIPVGQSNSNQVIMGFYRQRSHD-IIDMDSCLIQDRQHQEVMNRVK-YWLN 197
Query: 196 PQLGLSPYDVHSHSGFLKHLMLRTG 220
+L +S Y+ + +G ++HL++RTG
Sbjct: 198 -ELNISIYNEKTKTGLIRHLVVRTG 221
>gi|418677734|ref|ZP_13239008.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Leptospira
kirschneri serovar Grippotyphosa str. RM52]
gi|418687680|ref|ZP_13248839.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Leptospira
kirschneri serovar Grippotyphosa str. Moskva]
gi|418741865|ref|ZP_13298238.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Leptospira
kirschneri serovar Valbuzzi str. 200702274]
gi|400320924|gb|EJO68784.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Leptospira
kirschneri serovar Grippotyphosa str. RM52]
gi|410738004|gb|EKQ82743.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Leptospira
kirschneri serovar Grippotyphosa str. Moskva]
gi|410750223|gb|EKR07203.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Leptospira
kirschneri serovar Valbuzzi str. 200702274]
Length = 454
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 158 LGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYW-RDPQLGLSPYDVHSHSGFLKHLM 216
+G G F ++N++ CL+QSE +N L ++ + P L PYD S SGFLK+L
Sbjct: 137 VGQREAGSFRHIVNLETCLIQSEESNEELYRFRNLISKFPNL---PYDRKSDSGFLKYLT 193
Query: 217 LRTG 220
LR
Sbjct: 194 LRKA 197
>gi|421090409|ref|ZP_15551201.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Leptospira
kirschneri str. 200802841]
gi|410000623|gb|EKO51251.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Leptospira
kirschneri str. 200802841]
Length = 454
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 158 LGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYW-RDPQLGLSPYDVHSHSGFLKHLM 216
+G G F ++N++ CL+QSE +N L ++ + P L PYD S SGFLK+L
Sbjct: 137 VGQREAGSFRHIVNLETCLIQSEESNEELYRFRNLISKFPNL---PYDRKSDSGFLKYLT 193
Query: 217 LRTG 220
LR
Sbjct: 194 LRKA 197
>gi|390934502|ref|YP_006392007.1| TrmA family RNA methyltransferase [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
gi|389570003|gb|AFK86408.1| RNA methyltransferase, TrmA family [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
Length = 452
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 19/99 (19%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+ME++FG D + LGLH G + ++ D C + L V
Sbjct: 127 KMEYTFGK-------------DDNDATQLGLHVKGRYYDIITTDDCRIVDSDFIACLKNV 173
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMI 224
+Y R Q GL Y++ +H G++++L++R TG +I
Sbjct: 174 LNYTR--QQGLPHYNIKTHEGYMRYLVIRKAANTGEILI 210
>gi|418634446|ref|ZP_13196841.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU129]
gi|420190749|ref|ZP_14696689.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM037]
gi|420204823|ref|ZP_14710362.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM015]
gi|374837303|gb|EHS00872.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU129]
gi|394258428|gb|EJE03311.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM037]
gi|394271747|gb|EJE16233.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM015]
Length = 456
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 136 GPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRD 195
P R+ K +P + +G + D ++++D CL+Q + V+ V+ YW +
Sbjct: 124 NPWRYRNKSQIPVGQGNSNQVIMGFYRQRSHD-IIDMDSCLIQDKQHQEVMNRVK-YWLN 181
Query: 196 PQLGLSPYDVHSHSGFLKHLMLRTG 220
+L +S Y+ + +G ++HL++RTG
Sbjct: 182 -ELNISIYNEKAKTGLIRHLVVRTG 205
>gi|358062698|ref|ZP_09149339.1| hypothetical protein HMPREF9473_01401 [Clostridium hathewayi
WAL-18680]
gi|356699073|gb|EHI60592.1| hypothetical protein HMPREF9473_01401 [Clostridium hathewayi
WAL-18680]
Length = 569
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 18/105 (17%)
Query: 125 KGSYAEMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANL 184
+G +MEFSFG + K G ALG+H G F V+ ++ C + +
Sbjct: 122 EGYRNKMEFSFGDEY--------KDGP----LALGMHRRGSFHDVVTVEGCRIVHKDFTD 169
Query: 185 VLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMIC 225
+L A ++Y+ + +G Y H G+L+HL++R TG ++
Sbjct: 170 ILRATKEYFGELNVGF--YKKLRHVGYLRHLLVRRAVKTGEILVA 212
>gi|160942249|ref|ZP_02089558.1| hypothetical protein CLOBOL_07135 [Clostridium bolteae ATCC
BAA-613]
gi|158434806|gb|EDP12573.1| hypothetical protein CLOBOL_07135 [Clostridium bolteae ATCC
BAA-613]
Length = 477
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 22/105 (20%)
Query: 126 GSYAEMEFSFGPKRWFPKESLPKRGDHIEN--YALGLHAPGFFDKVLNIDKCLLQSEPAN 183
G +MEFSFG D +++ ALG+H G F ++ +C +
Sbjct: 136 GYRNKMEFSFG--------------DEVKDGPLALGMHKRGSFYDIVTTPECRIVHPDFC 181
Query: 184 LVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMI 224
+L A ++Y+ +LG++ Y H G+L+HL++R TG ++
Sbjct: 182 RILVATKEYFE--ELGVAFYKKLQHQGYLRHLLVRRAVKTGEILV 224
>gi|339008225|ref|ZP_08640799.1| RNA methyltransferase, TrmA family [Brevibacillus laterosporus LMG
15441]
gi|338775428|gb|EGP34957.1| RNA methyltransferase, TrmA family [Brevibacillus laterosporus LMG
15441]
Length = 550
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 43/70 (61%), Gaps = 5/70 (7%)
Query: 154 ENYAL--GLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGF 211
EN AL G +A D +++I++CL+Q + + V+A ++ +LG+ PY+ H+G
Sbjct: 235 ENGALIGGFYAEKSHD-IIDINECLIQHQANDEVVATIKRIAE--RLGIEPYNEVKHTGL 291
Query: 212 LKHLMLRTGS 221
L+H++ + G+
Sbjct: 292 LRHVVAKVGA 301
>gi|428169313|gb|EKX38248.1| hypothetical protein GUITHDRAFT_144362 [Guillardia theta CCMP2712]
Length = 573
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 158 LGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLML 217
+GLHA G KV++++KCLL S+ A V A +++ + ++ + GFL+ +
Sbjct: 230 IGLHAAGSMTKVVDVEKCLLPSQLAFDVYTATRNWILQSE--FQGWNAETKQGFLREFTI 287
Query: 218 RTGS 221
R+G+
Sbjct: 288 RSGT 291
>gi|418329071|ref|ZP_12940158.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis 14.1.R1.SE]
gi|365231177|gb|EHM72235.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis 14.1.R1.SE]
Length = 456
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 136 GPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRD 195
P R+ K +P + +G + D ++++D CL+Q + V+ V+ YW +
Sbjct: 124 NPWRYRNKSQIPVGQGNSNQVIMGFYRQRSHD-IIDMDSCLIQDKQHQEVMNRVK-YWLN 181
Query: 196 PQLGLSPYDVHSHSGFLKHLMLRTG 220
+L +S Y+ + +G ++HL++RTG
Sbjct: 182 -ELNISIYNEKAKTGLIRHLVVRTG 205
>gi|420174159|ref|ZP_14680613.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM061]
gi|394245299|gb|EJD90614.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM061]
Length = 456
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 136 GPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRD 195
P R+ K +P + +G + D ++++D CL+Q + V+ V+ YW +
Sbjct: 124 NPWRYRNKSQIPVGQGNSNQVIMGFYRQRSHD-IIDMDSCLIQDKQHQEVMNRVK-YWLN 181
Query: 196 PQLGLSPYDVHSHSGFLKHLMLRTG 220
+L +S Y+ + +G ++HL++RTG
Sbjct: 182 -ELNISIYNEKAKTGLIRHLVVRTG 205
>gi|418631461|ref|ZP_13193923.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU128]
gi|374835223|gb|EHR98843.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis VCU128]
Length = 456
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 136 GPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRD 195
P R+ K +P + +G + D ++++D CL+Q + V+ V+ YW +
Sbjct: 124 NPWRYRNKSQIPVGQGNSNQVIMGFYRQRSHD-IIDMDSCLIQDKQHQEVMNRVK-YWLN 181
Query: 196 PQLGLSPYDVHSHSGFLKHLMLRTG 220
+L +S Y+ + +G ++HL++RTG
Sbjct: 182 -ELNISIYNEKAKTGLIRHLVVRTG 205
>gi|418744900|ref|ZP_13301245.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Leptospira
santarosai str. CBC379]
gi|410794231|gb|EKR92141.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Leptospira
santarosai str. CBC379]
Length = 436
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 157 ALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRD-PQLGLSPYDVHSHSGFLKHL 215
+G G F +++++ CL+QSE +N L + + P L PYD S SGFLK+L
Sbjct: 120 VIGQREAGSFRYIVDLESCLIQSEESNAELKRFRSMISEFPDL---PYDRKSDSGFLKYL 176
Query: 216 MLRTG 220
LR
Sbjct: 177 TLRKA 181
>gi|310640376|ref|YP_003945134.1| RNA methyltransferase, trma family [Paenibacillus polymyxa SC2]
gi|309245326|gb|ADO54893.1| RNA methyltransferase, TrmA family [Paenibacillus polymyxa SC2]
Length = 585
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 12/74 (16%)
Query: 156 YALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHL 215
YA G H ++++++ CL+Q E + V+A V++ R LG+S Y+ + G L+H+
Sbjct: 279 YARGSH------RIVDMNTCLIQDERNDEVVARVKEIGR--MLGISAYNEETGRGLLRHV 330
Query: 216 ML----RTGSFMIC 225
++ RTG M+
Sbjct: 331 VVKTAFRTGEMMLV 344
>gi|424843170|ref|ZP_18267795.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Saprospira grandis DSM
2844]
gi|395321368|gb|EJF54289.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Saprospira grandis DSM
2844]
Length = 478
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 78 RGQELELVCESLAYKGKGVCKV--ADTGFVVLCDRVLPGEKFIGRVTRKKGSYAE 130
+G LEL +A+ GKG+ K+ + F+V + +PG+K R+T+KK +AE
Sbjct: 3 KGTTLELDIVDMAFGGKGIAKLPTENGEFIVFVNNSIPGQKVAARITKKKKRFAE 57
>gi|389818016|ref|ZP_10208509.1| RNA methyltransferase [Planococcus antarcticus DSM 14505]
gi|388464160|gb|EIM06494.1| RNA methyltransferase [Planococcus antarcticus DSM 14505]
Length = 456
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
Query: 137 PKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDP 196
P R+ K +P G G + P D + + D CL+Q+ A+ ++ A++
Sbjct: 125 PWRYRNKSQIP-FGTQDGKVVAGFYQPRSHD-IADTDTCLIQTPEADAIMVALKKNL--I 180
Query: 197 QLGLSPYDVHSHSGFLKHLMLR----TGSFMIC 225
++G+ PY+ +H G L+H+++R TG M+
Sbjct: 181 EMGIEPYEEATHRGMLRHVVVRKARATGEIMVV 213
>gi|210608457|ref|ZP_03287833.1| hypothetical protein CLONEX_00012 [Clostridium nexile DSM 1787]
gi|210153033|gb|EEA84039.1| hypothetical protein CLONEX_00012 [Clostridium nexile DSM 1787]
Length = 546
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 61/137 (44%), Gaps = 23/137 (16%)
Query: 87 ESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIG-RVTRKKGSYA-EMEFSFGPKRWFPKE 144
E + KG V ++ D +L +F G + + K+ +Y +MEFSFG +
Sbjct: 92 EQMKMKGDQVKEILDAA-------ILEDYEFEGVKASPKEFAYRNKMEFSFGDEY----- 139
Query: 145 SLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYD 204
K G +LGLH G VL C L E +L V +Y+++ + Y
Sbjct: 140 ---KDG----PLSLGLHKKGSTYDVLTAADCKLVHEDMTKILLCVLEYFKEKNVAY--YK 190
Query: 205 VHSHSGFLKHLMLRTGS 221
H G+L+HL+LR G
Sbjct: 191 KMQHVGYLRHLLLRRGD 207
>gi|359683916|ref|ZP_09253917.1| RNA methyltransferase [Leptospira santarosai str. 2000030832]
Length = 451
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 157 ALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRD-PQLGLSPYDVHSHSGFLKHL 215
+G G F +++++ CL+QSE +N L + + P L PYD S SGFLK+L
Sbjct: 135 VIGQREAGSFRYIVDLESCLIQSEESNAELKRFRSMISEFPDL---PYDRKSDSGFLKYL 191
Query: 216 MLRTG 220
LR
Sbjct: 192 TLRKA 196
>gi|422002240|ref|ZP_16349478.1| RNA methyltransferase [Leptospira santarosai serovar Shermani str.
LT 821]
gi|417259172|gb|EKT88551.1| RNA methyltransferase [Leptospira santarosai serovar Shermani str.
LT 821]
Length = 451
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 157 ALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRD-PQLGLSPYDVHSHSGFLKHL 215
+G G F +++++ CL+QSE +N L + + P L PYD S SGFLK+L
Sbjct: 135 VIGQREAGSFRYIVDLESCLIQSEESNAELKRFRSMISEFPDL---PYDRKSDSGFLKYL 191
Query: 216 MLRTG 220
LR
Sbjct: 192 TLRKA 196
>gi|420200721|ref|ZP_14706362.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM031]
gi|394267679|gb|EJE12263.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis NIHLM031]
Length = 456
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 136 GPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRD 195
P R+ K +P + +G + D ++++D CL+Q + V+ V+ YW +
Sbjct: 124 NPWRYRNKSQIPVGQGNSNQVIMGFYRQRSHD-IIDMDSCLIQDKQHQEVMNRVK-YWLN 181
Query: 196 PQLGLSPYDVHSHSGFLKHLMLRTG 220
+L +S Y+ + +G ++HL++RTG
Sbjct: 182 -ELNISIYNEKAKTGLIRHLVVRTG 205
>gi|387819135|ref|YP_005679482.1| TrmA family RNA methyltransferase [Clostridium botulinum H04402
065]
gi|322807179|emb|CBZ04753.1| RNA methyltransferase, TrmA family [Clostridium botulinum H04402
065]
Length = 453
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 18/99 (18%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEF+FG + K GD LG+H ++ +D C + +L V
Sbjct: 127 KMEFTFG--------DMEKGGD----LTLGMHVKNRNFSIVTVDNCEIVDRDFRNILTTV 174
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMI 224
+Y+ + +L Y V SH GFL++L++R TG ++
Sbjct: 175 VNYFNEKRL--PKYRVMSHEGFLRNLVIRKAKNTGEILV 211
>gi|148380817|ref|YP_001255358.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
A str. ATCC 3502]
gi|148290301|emb|CAL84425.1| putative RNA methyltransferase [Clostridium botulinum A str. ATCC
3502]
Length = 456
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 18/99 (18%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEF+FG + K GD LG+H ++ +D C + +L V
Sbjct: 132 KMEFTFG--------DMEKGGD----LTLGMHVKNRNFSIVTVDNCEIVDRDFRNILTTV 179
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMI 224
+Y+ + +L Y V SH GFL++L++R TG ++
Sbjct: 180 VNYFNEKRL--PKYRVMSHEGFLRNLVIRKAKNTGEILV 216
>gi|251794918|ref|YP_003009649.1| TrmA family RNA methyltransferase [Paenibacillus sp. JDR-2]
gi|247542544|gb|ACS99562.1| RNA methyltransferase, TrmA family [Paenibacillus sp. JDR-2]
Length = 465
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 8/65 (12%)
Query: 156 YALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHL 215
YA G H ++++ D+C +Q + + V+ V+ R +LG+S YD S G L+H+
Sbjct: 160 YAKGSH------RIIDTDQCHIQHDRNDEVVRIVKAIGR--ELGVSAYDEESGKGLLRHV 211
Query: 216 MLRTG 220
M RTG
Sbjct: 212 MTRTG 216
>gi|261418678|ref|YP_003252360.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y412MC61]
gi|319765493|ref|YP_004130994.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y412MC52]
gi|261375135|gb|ACX77878.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y412MC61]
gi|317110359|gb|ADU92851.1| RNA methyltransferase, TrmA family [Geobacillus sp. Y412MC52]
Length = 457
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 37/62 (59%), Gaps = 6/62 (9%)
Query: 164 GFFDK----VLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRT 219
GF+ + ++++D CL+Q E ++V+ V+ + G+ PYD +H G L+H++ R
Sbjct: 150 GFYKERSHEIIDMDACLIQQEKNDVVVQTVKRIAE--RYGIPPYDETTHKGVLRHIVARY 207
Query: 220 GS 221
G+
Sbjct: 208 GA 209
>gi|389572911|ref|ZP_10162988.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus sp. M 2-6]
gi|388427356|gb|EIL85164.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus sp. M 2-6]
Length = 461
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 10/69 (14%)
Query: 164 GFFDK----VLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR- 218
GF+ + +++++KCL+Q + V+ AV+D G+ Y+ H G+L+H+M+R
Sbjct: 152 GFYQQRTHEIIDMEKCLIQQSENDEVVQAVKDICN--AFGIKAYNEERHKGWLRHVMVRY 209
Query: 219 ---TGSFMI 224
TG M+
Sbjct: 210 GMATGEMMV 218
>gi|418627167|ref|ZP_13189748.1| 23S rRNA (uracil-5-)-methyltransferase RumA, partial
[Staphylococcus epidermidis VCU126]
gi|374830157|gb|EHR93942.1| 23S rRNA (uracil-5-)-methyltransferase RumA, partial
[Staphylococcus epidermidis VCU126]
Length = 339
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 137 PKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDP 196
P R+ K +P + +G + D ++++D CL+Q V+ V+ YW +
Sbjct: 125 PWRYRNKSQIPVGQSNSNQVIMGFYRQRSHD-IIDMDSCLIQDRQHQEVMNRVK-YWLN- 181
Query: 197 QLGLSPYDVHSHSGFLKHLMLRTG 220
+L +S Y+ + +G ++HL++RTG
Sbjct: 182 ELNISIYNEKTKTGLIRHLVVRTG 205
>gi|456875083|gb|EMF90317.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Leptospira
santarosai str. ST188]
Length = 451
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 157 ALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRD-PQLGLSPYDVHSHSGFLKHL 215
+G G F +++++ CL+QSE +N L + + P L PYD S SGFLK+L
Sbjct: 135 VIGQREAGSFRYIVDLESCLIQSEESNAELKRFRSMISEFPDL---PYDRKSDSGFLKYL 191
Query: 216 MLRTG 220
LR
Sbjct: 192 TLRKA 196
>gi|418755337|ref|ZP_13311544.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Leptospira
santarosai str. MOR084]
gi|409964348|gb|EKO32238.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Leptospira
santarosai str. MOR084]
Length = 451
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 157 ALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRD-PQLGLSPYDVHSHSGFLKHL 215
+G G F +++++ CL+QSE +N L + + P L PYD S SGFLK+L
Sbjct: 135 VIGQREAGSFRYIVDLESCLIQSEESNAELKRFRSMISEFPDL---PYDRKSDSGFLKYL 191
Query: 216 MLRTG 220
LR
Sbjct: 192 TLRKA 196
>gi|239625789|ref|ZP_04668820.1| RNA methyltransferase [Clostridiales bacterium 1_7_47_FAA]
gi|239520019|gb|EEQ59885.1| RNA methyltransferase [Clostridiales bacterium 1_7_47FAA]
Length = 462
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 51/107 (47%), Gaps = 22/107 (20%)
Query: 124 KKGSYAEMEFSFGPKRWFPKESLPKRGDHIEN--YALGLHAPGFFDKVLNIDKCLLQSEP 181
+KG +MEFSFG D +++ ALG+H G F ++ C +
Sbjct: 123 EKGYRNKMEFSFG--------------DEVKDGPLALGMHRRGSFYDIVTTPDCQIVHPD 168
Query: 182 ANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMI 224
+L A ++Y+ +LG + Y H G+L+HL++R TG ++
Sbjct: 169 FCRILVATKEYFE--ELGTAFYKKLQHKGYLRHLLVRRAVKTGEILV 213
>gi|312128413|ref|YP_003993287.1| RNA methyltransferase, TrmA family [Caldicellulosiruptor
hydrothermalis 108]
gi|311778432|gb|ADQ07918.1| RNA methyltransferase, TrmA family [Caldicellulosiruptor
hydrothermalis 108]
Length = 451
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 59/118 (50%), Gaps = 14/118 (11%)
Query: 118 IGRVTRKKGSYAEMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLL 177
IG+++ K ME P R+ K +LP GD+ + +G + D +++ID CL+
Sbjct: 106 IGKLSPKINDVIGME---KPFRYRNKTALPVGGDY-KKPQIGFYKKMTHD-IVDIDYCLI 160
Query: 178 QSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG-------SFMICAPV 228
Q E + V+ +++ + ++ + YD H G L+H+++R ++CA V
Sbjct: 161 QHEFCDDVIKGMKEMIKKHKIEV--YDERKHQGVLRHIVVRNSFAFDEMMLILVCAKV 216
>gi|291524456|emb|CBK90043.1| 23S rRNA m(5)U-1939 methyltransferase [Eubacterium rectale DSM
17629]
Length = 493
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Query: 137 PKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDP 196
P R+ K P D N G +A + ++ +D C L P N + + W +
Sbjct: 126 PYRYRNKAQFPVGYDRDGNIVTGFYASRSHN-IIPVDDCRL-GVPQNKEILDIIKEWMN- 182
Query: 197 QLGLSPYDVHSHSGFLKHLMLRTG----SFMIC 225
+ G++PYD ++H G ++H+++R G M+C
Sbjct: 183 ECGITPYDENTHKGLVRHVLIRYGFTSKQIMVC 215
>gi|282882158|ref|ZP_06290797.1| RNA methyltransferase [Peptoniphilus lacrimalis 315-B]
gi|281297923|gb|EFA90380.1| RNA methyltransferase [Peptoniphilus lacrimalis 315-B]
Length = 441
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 157 ALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLM 216
ALGLH F ++ N + C + E N++ +D+++D ++ SH G L+HL
Sbjct: 134 ALGLHKKNRFYEIENTNNCRIAHEDFNIIREKTRDFFKDKAF----FNRRSHEGTLRHLA 189
Query: 217 LRTGSF 222
+R ++
Sbjct: 190 IRRTNY 195
>gi|194016025|ref|ZP_03054640.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus pumilus ATCC
7061]
gi|194012380|gb|EDW21947.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus pumilus ATCC
7061]
Length = 460
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 10/69 (14%)
Query: 164 GFFDK----VLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR- 218
GF+ + +++++KCL+Q + V+ AV+D G+ Y+ H G+L+H+M+R
Sbjct: 152 GFYQQRTHEIIDMEKCLIQQSENDEVVQAVKDICN--AFGIKAYNEERHKGWLRHVMVRY 209
Query: 219 ---TGSFMI 224
TG M+
Sbjct: 210 GIATGEMMV 218
>gi|170760987|ref|YP_001788698.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
A3 str. Loch Maree]
gi|169407976|gb|ACA56387.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
A3 str. Loch Maree]
Length = 461
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 67/141 (47%), Gaps = 10/141 (7%)
Query: 82 LELVCESLAYKGKGVCKVADTGFVVLCD----RVLPGEKFIGRVTRKKGSYAEMEFSFGP 137
+E VC YK G C+V + D RV+ + IG++ K + P
Sbjct: 73 VESVCP--IYKQCGGCQVQHYSYKAQLDFKKRRVIDSLERIGKLDIDKIEIKDTIGMENP 130
Query: 138 KRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQ 197
R+ K +P R + E +G + P + V ++ +C +Q E A+ ++ ++++ +
Sbjct: 131 YRYRNKIQMPVRFEKGE-IKIGFYKPRTHE-VADVKECFIQDEQADEIIQIIRNWM--AK 186
Query: 198 LGLSPYDVHSHSGFLKHLMLR 218
+S Y+ + GF++H+M+R
Sbjct: 187 HNISAYNEETGKGFIRHIMVR 207
>gi|153931008|ref|YP_001385124.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
A str. ATCC 19397]
gi|153937829|ref|YP_001388593.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
A str. Hall]
gi|152927052|gb|ABS32552.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
A str. ATCC 19397]
gi|152933743|gb|ABS39242.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
A str. Hall]
Length = 450
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 18/99 (18%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEF+FG + K GD LG+H ++ +D C + +L V
Sbjct: 127 KMEFTFG--------DMEKGGD----LTLGMHVKNRNFSIVTVDNCEIVDRDFRNILTTV 174
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMI 224
+Y+ + +L Y V SH GFL++L++R TG ++
Sbjct: 175 VNYFNEKRL--PKYRVMSHEGFLRNLVIRKAKNTGEILV 211
>gi|242241735|ref|ZP_04796180.1| TrmA family RNA methyltransferase [Staphylococcus epidermidis
W23144]
gi|242234825|gb|EES37136.1| TrmA family RNA methyltransferase [Staphylococcus epidermidis
W23144]
Length = 472
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 136 GPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRD 195
P R+ K +P + +G + D ++++D CL+Q + V+ V+ YW +
Sbjct: 140 NPWRYRNKSQIPVGQGNSNQVIMGFYRQRSHD-IIDMDSCLIQDKQHQEVMNRVK-YWLN 197
Query: 196 PQLGLSPYDVHSHSGFLKHLMLRTG 220
+L +S Y+ + +G ++HL++RTG
Sbjct: 198 -ELNISIYNEKAKTGLIRHLVVRTG 221
>gi|300814227|ref|ZP_07094503.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus
sp. oral taxon 836 str. F0141]
gi|300511651|gb|EFK38875.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Peptoniphilus
sp. oral taxon 836 str. F0141]
Length = 441
Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 157 ALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLM 216
ALGLH F ++ N + C + E N++ +D+++D ++ SH G L+HL
Sbjct: 134 ALGLHKKNRFYEIENTNNCRIAHEDFNIIREKTRDFFKDKAF----FNRRSHEGTLRHLA 189
Query: 217 LRTGSF 222
+R ++
Sbjct: 190 IRRTNY 195
>gi|146295523|ref|YP_001179294.1| TrmA family RNA methyltransferase [Caldicellulosiruptor
saccharolyticus DSM 8903]
gi|145409099|gb|ABP66103.1| RNA methyltransferase, TrmA family [Caldicellulosiruptor
saccharolyticus DSM 8903]
Length = 452
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 54/103 (52%), Gaps = 7/103 (6%)
Query: 118 IGRVTRKKGSYAEMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLL 177
IG+++ + ME P R+ K +LP GD+ + +G + D +++ID CL+
Sbjct: 106 IGKLSPRINDVIGME---NPFRYRNKTALPVGGDY-KKPQIGFYRKMTHD-IVDIDYCLI 160
Query: 178 QSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
Q E + V+ ++D + ++ + YD H G L+H+++R
Sbjct: 161 QHEFCDDVIKGMKDLIQKHKIEV--YDEKKHKGVLRHIVVRNS 201
>gi|408355817|ref|YP_006844348.1| RNA methyltransferase [Amphibacillus xylanus NBRC 15112]
gi|407726588|dbj|BAM46586.1| putative RNA methyltransferase [Amphibacillus xylanus NBRC 15112]
Length = 460
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 137 PKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDP 196
P R+ K +P G+ G + P D + +++C++ SE + ++ V++
Sbjct: 129 PWRYRNKVQIP-VGEKDGKLITGFYRPRSHDIIDEMERCIVTSEVNDDLVDIVREIAN-- 185
Query: 197 QLGLSPYDVHSHSGFLKHLMLRTGS 221
+LG+ Y+ +H G L+H+M+RTG
Sbjct: 186 ELGIPAYNEETHRGVLRHIMVRTGE 210
>gi|421189080|ref|ZP_15646399.1| tRNA (uracil-5-)-methyltransferase related enzyme [Oenococcus oeni
AWRIB422]
gi|399973837|gb|EJO08001.1| tRNA (uracil-5-)-methyltransferase related enzyme [Oenococcus oeni
AWRIB422]
Length = 458
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
Query: 73 YFKPIRGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAEME 132
Y K ++ QEL L Y+G GV KV D F V LPGE+ +TR SYA
Sbjct: 6 YSKLVKNQELTGDVIDLTYEGLGVVKVDD--FPVFIVNSLPGERIKFAITRVLNSYA--- 60
Query: 133 FSFGPKRWFPKESLPK-RGDHIENYALGL 160
FG KES + R DH E A G+
Sbjct: 61 --FGRVLGIIKESPDRVRADHPEMIASGI 87
>gi|379728829|ref|YP_005321025.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Saprospira grandis
str. Lewin]
gi|378574440|gb|AFC23441.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Saprospira grandis
str. Lewin]
Length = 501
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 78 RGQELELVCESLAYKGKGVCKV--ADTGFVVLCDRVLPGEKFIGRVTRKKGSYAE 130
+G LEL +A+ GKG+ K+ + F+V + +PG+K R+T+KK +AE
Sbjct: 26 KGTTLELDIVDMAFGGKGIAKLPTENGEFIVFVNNSIPGQKVAARITKKKKRFAE 80
>gi|374606025|ref|ZP_09678926.1| RNA methyltransferase, trma family protein [Paenibacillus
dendritiformis C454]
gi|374388353|gb|EHQ59774.1| RNA methyltransferase, trma family protein [Paenibacillus
dendritiformis C454]
Length = 510
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 137 PKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDP 196
P R+ K +P D +G + ++++ D LLQ E + + AV+ R
Sbjct: 180 PWRYRNKSQMPIGADPRTGELIGGYFAKASHRIIDTDVSLLQHERNDEAMRAVKRIAR-- 237
Query: 197 QLGLSPYDVHSHSGFLKHLMLRTG 220
+ G+ PY+ +H+G L+H ++R G
Sbjct: 238 KYGIEPYNEETHTGLLRHAIMRVG 261
>gi|269123421|ref|YP_003305998.1| RNA methyltransferase, TrmA family [Streptobacillus moniliformis
DSM 12112]
gi|268314747|gb|ACZ01121.1| RNA methyltransferase, TrmA family [Streptobacillus moniliformis
DSM 12112]
Length = 466
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 14/92 (15%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSFG + K G I LGLH F ++N+++C L E ++
Sbjct: 131 KMEFSFGNEY--------KDGPII----LGLHKKNSFHDIVNVNECRLMDENFRKIVRFT 178
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
D++ + +S Y +H GFL++L++R G
Sbjct: 179 NDFF--SKKDISFYHRLTHIGFLRNLVIRKGE 208
>gi|116491644|ref|YP_811188.1| tRNA (uracil-5-)-methyltransferase related enzyme [Oenococcus oeni
PSU-1]
gi|290891253|ref|ZP_06554315.1| hypothetical protein AWRIB429_1705 [Oenococcus oeni AWRIB429]
gi|419758421|ref|ZP_14284738.1| tRNA (uracil-5-)-methyltransferase related enzyme [Oenococcus oeni
AWRIB304]
gi|419856629|ref|ZP_14379350.1| tRNA (uracil-5-)-methyltransferase related enzyme [Oenococcus oeni
AWRIB202]
gi|421184813|ref|ZP_15642229.1| tRNA (uracil-5-)-methyltransferase related enzyme [Oenococcus oeni
AWRIB318]
gi|421188162|ref|ZP_15645501.1| tRNA (uracil-5-)-methyltransferase related enzyme [Oenococcus oeni
AWRIB419]
gi|421192823|ref|ZP_15650076.1| tRNA (uracil-5-)-methyltransferase related enzyme [Oenococcus oeni
AWRIB553]
gi|421195136|ref|ZP_15652348.1| tRNA (uracil-5-)-methyltransferase related enzyme [Oenococcus oeni
AWRIB568]
gi|421197005|ref|ZP_15654186.1| tRNA (uracil-5-)-methyltransferase related enzyme [Oenococcus oeni
AWRIB576]
gi|116092369|gb|ABJ57523.1| tRNA (uracil-5-)-methyltransferase related enzyme [Oenococcus oeni
PSU-1]
gi|290479217|gb|EFD87879.1| hypothetical protein AWRIB429_1705 [Oenococcus oeni AWRIB429]
gi|399905043|gb|EJN92494.1| tRNA (uracil-5-)-methyltransferase related enzyme [Oenococcus oeni
AWRIB304]
gi|399965719|gb|EJO00285.1| tRNA (uracil-5-)-methyltransferase related enzyme [Oenococcus oeni
AWRIB419]
gi|399966415|gb|EJO00964.1| tRNA (uracil-5-)-methyltransferase related enzyme [Oenococcus oeni
AWRIB318]
gi|399974401|gb|EJO08564.1| tRNA (uracil-5-)-methyltransferase related enzyme [Oenococcus oeni
AWRIB553]
gi|399976324|gb|EJO10350.1| tRNA (uracil-5-)-methyltransferase related enzyme [Oenococcus oeni
AWRIB576]
gi|399976920|gb|EJO10933.1| tRNA (uracil-5-)-methyltransferase related enzyme [Oenococcus oeni
AWRIB568]
gi|410499674|gb|EKP91105.1| tRNA (uracil-5-)-methyltransferase related enzyme [Oenococcus oeni
AWRIB202]
Length = 458
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
Query: 73 YFKPIRGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAEME 132
Y K ++ QEL L Y+G GV KV D F V LPGE+ +TR SYA
Sbjct: 6 YSKLVKNQELTGDVIDLTYEGLGVVKVDD--FPVFIVNSLPGERIKFAITRVLNSYA--- 60
Query: 133 FSFGPKRWFPKESLPK-RGDHIENYALGL 160
FG KES + R DH E A G+
Sbjct: 61 --FGRVLGIIKESPDRVRADHPEMIASGI 87
>gi|416127636|ref|ZP_11597002.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis FRI909]
gi|319399862|gb|EFV88109.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
epidermidis FRI909]
Length = 456
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 46/85 (54%), Gaps = 3/85 (3%)
Query: 136 GPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRD 195
P R+ K +P + +G + D ++++D CL+Q + V+ V+ YW +
Sbjct: 124 NPWRYRNKSQIPVGQGNSNQVIMGFYRQRSHD-IIDMDSCLIQDKQHQEVMNRVK-YWLN 181
Query: 196 PQLGLSPYDVHSHSGFLKHLMLRTG 220
+L +S Y+ + +G ++HL++RTG
Sbjct: 182 -ELNISIYNEKAKTGLVRHLVVRTG 205
>gi|169346803|ref|ZP_02865754.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
perfringens C str. JGS1495]
gi|169297085|gb|EDS79207.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
perfringens C str. JGS1495]
Length = 451
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 78 RGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAEMEFS 134
+G E+EL+ E + + KG V G V PG+K GRVT+K+ YAE+ S
Sbjct: 3 KGNEIELLVEGIEFPAKGFGFV--DGLKVYAKNTFPGQKVFGRVTKKRKEYAEIRVS 57
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 47/89 (52%), Gaps = 14/89 (15%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+ME++FG + ++G + +G+H G ++N+DKC+L E +L
Sbjct: 127 KMEYTFGDE---------EKGGEL---TIGMHMKGKSFGIVNVDKCVLVDEDFRNILDTT 174
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR 218
Y+R+ GL Y + +G+L++L++R
Sbjct: 175 VKYFREK--GLPFYKIMPRTGYLRYLVVR 201
>gi|390456277|ref|ZP_10241805.1| RNA methyltransferase, trma family protein [Paenibacillus peoriae
KCTC 3763]
Length = 621
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 12/74 (16%)
Query: 156 YALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHL 215
YA G H ++++++ CL+Q E + V+A V++ R LG+S Y+ + G L+H+
Sbjct: 316 YARGSH------RIVDMNTCLIQDERNDEVVARVKEIGR--MLGISAYNEETGRGLLRHV 367
Query: 216 ML----RTGSFMIC 225
++ RTG M+
Sbjct: 368 VVKTAFRTGEMMLV 381
>gi|402311328|ref|ZP_10830276.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacterium sp. AS15]
gi|400365474|gb|EJP18526.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacterium sp. AS15]
Length = 450
Score = 42.4 bits (98), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 14/91 (15%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEF+FG + K GD I +GLH ++ ++ CLL E +L
Sbjct: 127 KMEFTFGNE--------VKDGDLI----IGLHKKNSPMSIVPVEDCLLVDEDYRTILKMT 174
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
+Y+R L Y + SH G+ +HL++R G
Sbjct: 175 GEYFRAKNL--PHYHIKSHEGYPRHLVIRKG 203
>gi|423080918|ref|ZP_17069531.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium difficile
002-P50-2011]
gi|423085399|ref|ZP_17073842.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium difficile
050-P50-2011]
gi|357549720|gb|EHJ31560.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium difficile
050-P50-2011]
gi|357551691|gb|EHJ33476.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium difficile
002-P50-2011]
Length = 545
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 150 GDHIEN--YALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHS 207
GD ++N LGLH G + +++C+L E + +L + +++ + + L Y +
Sbjct: 135 GDEVKNGPLTLGLHKKGKHIDIQTVEECMLVDEDFSKILVSSVEFFNEKK--LPYYRTMN 192
Query: 208 HSGFLKHLMLRTG 220
H G+L+HL++R G
Sbjct: 193 HKGYLRHLVVRKG 205
>gi|138893974|ref|YP_001124427.1| RNA methyltransferase-like protein [Geobacillus thermodenitrificans
NG80-2]
gi|196250476|ref|ZP_03149167.1| RNA methyltransferase, TrmA family [Geobacillus sp. G11MC16]
gi|134265487|gb|ABO65682.1| RNA methyltransferase-like protein [Geobacillus thermodenitrificans
NG80-2]
gi|196209966|gb|EDY04734.1| RNA methyltransferase, TrmA family [Geobacillus sp. G11MC16]
Length = 460
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 37/62 (59%), Gaps = 6/62 (9%)
Query: 164 GFFDK----VLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRT 219
GF+ + ++++D C +Q E ++V+ AV+ + G+ PYD +H G L+H++ R
Sbjct: 150 GFYKERSHEIIDMDACFIQQEKNDVVVQAVKRIAE--RYGVRPYDELTHRGVLRHIVARY 207
Query: 220 GS 221
G+
Sbjct: 208 GA 209
>gi|375011084|ref|YP_004988072.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Owenweeksia
hongkongensis DSM 17368]
gi|359347008|gb|AEV31427.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Owenweeksia
hongkongensis DSM 17368]
Length = 479
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 78 RGQELELVCESLAYKGKGVCKVA--DTGFVVLCDRVLPGEKFIGRVTRKKGSYAE 130
R Q +EL + +A++GKG+ +V D ++V +PG+ ++ + K SYAE
Sbjct: 9 RNQRVELKIDDMAFEGKGISRVETEDGKYIVFVPNTIPGQVVSAKIIKAKNSYAE 63
>gi|150015413|ref|YP_001307667.1| RNA methyltransferase [Clostridium beijerinckii NCIMB 8052]
gi|149901878|gb|ABR32711.1| RNA methyltransferase, TrmA family [Clostridium beijerinckii NCIMB
8052]
Length = 452
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEF+FG + +G E +LG+H G +L +D+C L E ++
Sbjct: 127 KMEFTFGDE---------AKG---EPLSLGMHMRGKSFGILTVDECKLVDEDYRKIIRLT 174
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMI 224
DY+R+ L Y + G+L+HL++R TG ++
Sbjct: 175 ADYFREKDLPY--YRIMKAEGYLRHLVIRKAQNTGEILV 211
>gi|421185540|ref|ZP_15642939.1| tRNA (uracil-5-)-methyltransferase related enzyme [Oenococcus oeni
AWRIB418]
gi|399968803|gb|EJO03234.1| tRNA (uracil-5-)-methyltransferase related enzyme [Oenococcus oeni
AWRIB418]
Length = 458
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
Query: 73 YFKPIRGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAEME 132
Y K ++ QEL L Y+G GV KV D F V LPGE+ +TR SYA
Sbjct: 6 YSKLVKNQELTGDVIDLTYEGLGVVKVDD--FPVFIVNSLPGERIKFAITRVLNSYA--- 60
Query: 133 FSFGPKRWFPKESLPK-RGDHIENYALGL 160
FG KES + R DH E A G+
Sbjct: 61 --FGRVLEIIKESPDRVRADHPEMIASGI 87
>gi|255654431|ref|ZP_05399840.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile
QCD-23m63]
Length = 451
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 150 GDHIEN--YALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHS 207
GD ++N LGLH G + +++C+L E + +L + +++ + + L Y +
Sbjct: 133 GDEVKNGPLTLGLHKKGKHIDIQTVEECMLVDEDFSKILVSSVEFFNEKK--LPYYRTMN 190
Query: 208 HSGFLKHLMLRTG 220
H G+L+HL++R G
Sbjct: 191 HKGYLRHLVVRKG 203
>gi|386039528|ref|YP_005958482.1| RNA methyltransferase [Paenibacillus polymyxa M1]
gi|343095566|emb|CCC83775.1| RNA methyltransferase [Paenibacillus polymyxa M1]
Length = 537
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 12/74 (16%)
Query: 156 YALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHL 215
YA G H ++++++ CL+Q E + V+A V++ R LG+S Y+ + G L+H+
Sbjct: 231 YARGSH------RIVDMNTCLIQDERNDEVVARVKEIGR--MLGISAYNEETGRGLLRHV 282
Query: 216 ML----RTGSFMIC 225
++ RTG M+
Sbjct: 283 VVKTAFRTGEMMLV 296
>gi|348027261|ref|YP_004767066.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Megasphaera elsdenii
DSM 20460]
gi|341823315|emb|CCC74239.1| 23S rRNA (Uracil-5-)-methyltransferase RumA [Megasphaera elsdenii
DSM 20460]
Length = 461
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 12/92 (13%)
Query: 138 KRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQ 197
K FP + K I +A H +V+++ C +Q E N ++A V+ + +D
Sbjct: 136 KMQFPVAAAGKGKVAIGCFAAATH------EVIDVTDCAIQKEGNNAIVAVVRQWMKD-- 187
Query: 198 LGLSPYDVHSHSGFLKHLMLR----TGSFMIC 225
+ YD + +G ++H+M R TG M+C
Sbjct: 188 FKIPAYDEDARTGIVRHIMGRVGVHTGEIMVC 219
>gi|160878319|ref|YP_001557287.1| RNA methyltransferase [Clostridium phytofermentans ISDg]
gi|160426985|gb|ABX40548.1| RNA methyltransferase, TrmA family [Clostridium phytofermentans
ISDg]
Length = 468
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 12/103 (11%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
E + + K FP + KR D +G +A G +++ KC + E ++A +
Sbjct: 126 ENPYYYRNKAQFP---VGKRTDG--EVVIGFYA-GRTHSIIDTAKCHIGDESTEPLIACI 179
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG----SFMICAPV 228
+++ + Q +S YD SH G ++H++LR G MIC +
Sbjct: 180 RNFLK--QENISIYDEESHQGLVRHILLRVGFTTKELMICVVI 220
>gi|254974048|ref|ZP_05270520.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile
QCD-66c26]
gi|255091449|ref|ZP_05320927.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile
CIP 107932]
gi|255313180|ref|ZP_05354763.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile
QCD-76w55]
gi|255515867|ref|ZP_05383543.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile
QCD-97b34]
gi|255648960|ref|ZP_05395862.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile
QCD-37x79]
gi|306519078|ref|ZP_07405425.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium difficile
QCD-32g58]
gi|384359715|ref|YP_006197567.1| putative tRNA (uracil-5-)-methyltransferase [Clostridium difficile
BI1]
Length = 451
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 150 GDHIEN--YALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHS 207
GD ++N LGLH G + +++C+L E + +L + +++ + + L Y +
Sbjct: 133 GDEVKNGPLTLGLHKKGKHIDIQTVEECMLVDEDFSKILVSSVEFFNEKK--LPYYRTMN 190
Query: 208 HSGFLKHLMLRTG 220
H G+L+HL++R G
Sbjct: 191 HKGYLRHLVVRKG 203
>gi|255099546|ref|ZP_05328523.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile
QCD-63q42]
Length = 451
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 150 GDHIEN--YALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHS 207
GD ++N LGLH G + +++C+L E + +L + +++ + + L Y +
Sbjct: 133 GDEVKNGPLTLGLHKKGKHIDIQTVEECMLVDEDFSKILVSSVEFFNEKK--LPYYRTMN 190
Query: 208 HSGFLKHLMLRTG 220
H G+L+HL++R G
Sbjct: 191 HKGYLRHLVVRKG 203
>gi|260685752|ref|YP_003216885.1| tRNA (Uracil-5-)-methyltransferase [Clostridium difficile R20291]
gi|260211768|emb|CBE02120.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile
R20291]
Length = 453
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 150 GDHIEN--YALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHS 207
GD ++N LGLH G + +++C+L E + +L + +++ + + L Y +
Sbjct: 135 GDEVKNGPLTLGLHKKGKHIDIQTVEECMLVDEDFSKILVSSVEFFNEKK--LPYYRTMN 192
Query: 208 HSGFLKHLMLRTG 220
H G+L+HL++R G
Sbjct: 193 HKGYLRHLVVRKG 205
>gi|423088929|ref|ZP_17077297.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium difficile
70-100-2010]
gi|357558840|gb|EHJ40314.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium difficile
70-100-2010]
Length = 453
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 150 GDHIEN--YALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHS 207
GD ++N LGLH G + +++C+L E + +L + +++ + + L Y +
Sbjct: 135 GDEVKNGPLTLGLHKKGKHIDIQTVEECMLVDEDFSKILVSSVEFFNEKK--LPYYRTMN 192
Query: 208 HSGFLKHLMLRTG 220
H G+L+HL++R G
Sbjct: 193 HKGYLRHLVVRKG 205
>gi|296449152|ref|ZP_06890939.1| 23S rRNA (uracil-5-)-methyltransferase [Clostridium difficile
NAP08]
gi|296880869|ref|ZP_06904817.1| 23S rRNA (uracil-5-)-methyltransferase [Clostridium difficile
NAP07]
gi|296261971|gb|EFH08779.1| 23S rRNA (uracil-5-)-methyltransferase [Clostridium difficile
NAP08]
gi|296428156|gb|EFH14055.1| 23S rRNA (uracil-5-)-methyltransferase [Clostridium difficile
NAP07]
Length = 453
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 150 GDHIEN--YALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHS 207
GD ++N LGLH G + +++C+L E + +L + +++ + + L Y +
Sbjct: 135 GDEVKNGPLTLGLHKKGKHIDIQTVEECMLVDEDFSKILVSSVEFFNEKK--LPYYRTMN 192
Query: 208 HSGFLKHLMLRTG 220
H G+L+HL++R G
Sbjct: 193 HKGYLRHLVVRKG 205
>gi|350565350|ref|ZP_08934124.1| TrmA family RNA methyltransferase [Peptoniphilus indolicus ATCC
29427]
gi|348663853|gb|EGY80392.1| TrmA family RNA methyltransferase [Peptoniphilus indolicus ATCC
29427]
Length = 532
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 157 ALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLM 216
ALGLH F +V+N C + S+ N + A +DY+ L PY H G L+HL+
Sbjct: 134 ALGLHMKNRFYEVVNTTDCNIVSQDFNTIRAFTRDYFDGV---LKPYHKMRHVGNLRHLL 190
Query: 217 LR 218
+R
Sbjct: 191 IR 192
>gi|342218738|ref|ZP_08711342.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Megasphaera sp. UPII
135-E]
gi|341588866|gb|EGS32238.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Megasphaera sp. UPII
135-E]
Length = 491
Score = 42.4 bits (98), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Query: 137 PKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDP 196
P + K P D ++G A + V+N++ C +Q E N ++ V+ + +D
Sbjct: 70 PWNYRNKMQFPVGEDKKNTLSIGCFAAATHN-VINVENCAIQKEENNQIVRVVRQWMKD- 127
Query: 197 QLGLSPYDVHSHSGFLKHLM----LRTGSFMIC 225
+ YD +G ++H+M ++TG M+C
Sbjct: 128 -FKIPAYDEDKCTGMIRHIMGRVGVKTGEIMVC 159
>gi|400927266|ref|YP_001086872.2| tRNA (Uracil-5-)-methyltransferase [Clostridium difficile 630]
gi|328887534|emb|CAJ67227.2| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile
630]
Length = 453
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 150 GDHIEN--YALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHS 207
GD ++N LGLH G + +++C+L E + +L + +++ + + L Y +
Sbjct: 133 GDEVKNGPLTLGLHKKGKHIDIQTVEECMLVDEDFSKILVSSVEFFNEKK--LPYYRTMN 190
Query: 208 HSGFLKHLMLRTG 220
H G+L+HL++R G
Sbjct: 191 HKGYLRHLVVRKG 203
>gi|347532457|ref|YP_004839220.1| tRNA (uracil-5-) -methyltransferase [Roseburia hominis A2-183]
gi|345502605|gb|AEN97288.1| tRNA (uracil-5-) -methyltransferase [Roseburia hominis A2-183]
Length = 474
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 30/147 (20%)
Query: 87 ESLAYKGKGVCKVADTGFVVLCDRVLPGE---KFIG-RVTRKKGSYA-EMEFSFGPKRWF 141
E LA K V K+ D D ++P +F+G + + ++ Y +MEFSFG
Sbjct: 91 EQLAMKASQVKKLID-------DVIVPENTDYEFLGIKASPRQQEYRNKMEFSFGDAY-- 141
Query: 142 PKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLS 201
K G ALG+H G F ++++ +C + + + VL DY+ + L
Sbjct: 142 ------KDG----PLALGMHKRGSFYDIVDVPECRIVDDDFHTVLTVTLDYFEERNLPY- 190
Query: 202 PYDVHSHSGFLKHLMLR----TGSFMI 224
Y H+G+L+HL++R TG ++
Sbjct: 191 -YHKLRHTGYLRHLLVRKAVKTGEILV 216
>gi|291459844|ref|ZP_06599234.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Oribacterium sp. oral
taxon 078 str. F0262]
gi|291417634|gb|EFE91353.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Oribacterium sp. oral
taxon 078 str. F0262]
Length = 466
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSFG + ++G + LGLH F +LN D C L ++L
Sbjct: 73 KMEFSFGDQ---------EKGGPL---CLGLHQKRSFFNILNADDCRLPDPDFGVLLRLT 120
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMI 224
++Y+ L + Y SH G+L+HL++R TG ++
Sbjct: 121 REYF--ASLSIDYYHKKSHGGYLRHLLIRRAVKTGEILV 157
>gi|260682153|ref|YP_003213438.1| tRNA (Uracil-5-)-methyltransferase [Clostridium difficile CD196]
gi|260208316|emb|CBA60769.1| putative tRNA (Uracil-5-)-methyltransferase [Clostridium difficile
CD196]
Length = 456
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 150 GDHIEN--YALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHS 207
GD ++N LGLH G + +++C+L E + +L + +++ + + L Y +
Sbjct: 138 GDEVKNGPLTLGLHKKGKHIDIQTVEECMLVDEDFSKILVSSVEFFNEKK--LPYYRTMN 195
Query: 208 HSGFLKHLMLRTG 220
H G+L+HL++R G
Sbjct: 196 HKGYLRHLVVRKG 208
>gi|291525750|emb|CBK91337.1| 23S rRNA m(5)U-1939 methyltransferase [Eubacterium rectale DSM
17629]
Length = 471
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 22/118 (18%)
Query: 114 GEKFIG-RVTRKKGSYA-EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLN 171
G +FIG + KK Y +MEFSFG + K G ALG+H G F ++
Sbjct: 114 GYEFIGIHGSPKKSEYRNKMEFSFGDEY--------KDGP----LALGMHKRGSFYDLVT 161
Query: 172 IDKCLLQSEPANLVLAAVQDYWRDPQLGLSPY-DVHSHSGFLKHLMLR----TGSFMI 224
+ C + E +L A DY+ + PY +H G+L+HL++R TG ++
Sbjct: 162 VSDCQIVDEDFRTILKATLDYFSKNNI---PYFHRATHKGYLRHLLVRKATKTGEIIV 216
>gi|257066487|ref|YP_003152743.1| TrmA family RNA methyltransferase [Anaerococcus prevotii DSM 20548]
gi|256798367|gb|ACV29022.1| RNA methyltransferase, TrmA family [Anaerococcus prevotii DSM
20548]
Length = 457
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 18/117 (15%)
Query: 113 PGEKFIGRVTRKKGSYAEMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNI 172
G+ I + + K +ME++FG + K GD + LGLH F ++++
Sbjct: 112 SGDIKINQSPKTKAYRNKMEYTFGDSK--------KGGDLV----LGLHRQNRFYEIVDT 159
Query: 173 DKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLML----RTGSFMIC 225
C + N + +VQ Y+R+ + Y + G L+HL++ RTG M+
Sbjct: 160 TNCNIIDGDFNTIRESVQAYFREKKTDF--YHKRTREGLLRHLIIRKAHRTGEIMVI 214
>gi|255102596|ref|ZP_05331573.1| putative RNA methyltransferase [Clostridium difficile QCD-63q42]
Length = 454
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 47/88 (53%), Gaps = 12/88 (13%)
Query: 137 PKRWFPKESLPKRGDHIENYALGLHAPGFFDK----VLNIDKCLLQSEPANLVLAAVQDY 192
P R+ K P + ++ G+ GF+ K V++ +KC++Q E + ++ ++ Y
Sbjct: 124 PYRYRNKAQFPIQKNN------GIPIIGFYKKKTHDVISTEKCVIQHEINDKIVKIIKTY 177
Query: 193 WRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
R ++ S YD +H+G ++HL+ + G
Sbjct: 178 IRAYKV--SIYDEKTHTGLIRHLVTKIG 203
>gi|238923775|ref|YP_002937291.1| tRNA (uracil-5-) -methyltransferase [Eubacterium rectale ATCC
33656]
gi|238875450|gb|ACR75157.1| tRNA (uracil-5-) -methyltransferase [Eubacterium rectale ATCC
33656]
Length = 470
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 22/118 (18%)
Query: 114 GEKFIG-RVTRKKGSYA-EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLN 171
G +FIG + KK Y +MEFSFG + K G ALG+H G F ++
Sbjct: 114 GYEFIGIHGSPKKSEYRNKMEFSFGDEY--------KDGP----LALGMHKRGSFYDLVT 161
Query: 172 IDKCLLQSEPANLVLAAVQDYWRDPQLGLSPY-DVHSHSGFLKHLMLR----TGSFMI 224
+ C + E +L A DY+ + PY +H G+L+HL++R TG ++
Sbjct: 162 VSDCQIVDEDFRTILKATLDYFSKNNI---PYFHRATHKGYLRHLLVRKATKTGEIIV 216
>gi|423082865|ref|ZP_17071448.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium difficile
002-P50-2011]
gi|423086315|ref|ZP_17074724.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium difficile
050-P50-2011]
gi|357547184|gb|EHJ29078.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium difficile
002-P50-2011]
gi|357547302|gb|EHJ29192.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium difficile
050-P50-2011]
Length = 452
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 47/88 (53%), Gaps = 12/88 (13%)
Query: 137 PKRWFPKESLPKRGDHIENYALGLHAPGFFDK----VLNIDKCLLQSEPANLVLAAVQDY 192
P R+ K P + ++ G+ GF+ K V++ +KC++Q E + ++ ++ Y
Sbjct: 124 PYRYRNKAQFPIQKNN------GIPIIGFYKKKTHDVISTEKCVIQHEINDKIVKIIKTY 177
Query: 193 WRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
R ++ S YD +H+G ++HL+ + G
Sbjct: 178 IRAYKV--SIYDEKTHTGLIRHLVTKIG 203
>gi|291528120|emb|CBK93706.1| 23S rRNA m(5)U-1939 methyltransferase [Eubacterium rectale M104/1]
Length = 468
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 22/118 (18%)
Query: 114 GEKFIG-RVTRKKGSYA-EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLN 171
G +FIG + KK Y +MEFSFG + K G ALG+H G F ++
Sbjct: 114 GYEFIGIHGSPKKSEYRNKMEFSFGDEY--------KDGP----LALGMHKRGSFYDLVT 161
Query: 172 IDKCLLQSEPANLVLAAVQDYWRDPQLGLSPY-DVHSHSGFLKHLMLR----TGSFMI 224
+ C + E +L A DY+ + PY +H G+L+HL++R TG ++
Sbjct: 162 VSDCQIVDEDFRTILKATLDYFSKNNI---PYFHRATHKGYLRHLLVRKATKTGEIIV 216
>gi|262038996|ref|ZP_06012331.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Leptotrichia
goodfellowii F0264]
gi|261746988|gb|EEY34492.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Leptotrichia
goodfellowii F0264]
Length = 483
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 157 ALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWR--DPQLGLSPYDVHSHSGFLKH 214
LG+H G F ++ +++C L +L A DY+R + + LS Y H G+L++
Sbjct: 143 TLGMHKKGSFHDIITVNECKLMDIDFRKILTATADYFRKKEEEGELSFYHRIQHIGYLRN 202
Query: 215 LMLRTGS 221
++R G
Sbjct: 203 FVIRKGE 209
>gi|312794361|ref|YP_004027284.1| RNA methyltransferase, TrmA family [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312181501|gb|ADQ41671.1| RNA methyltransferase, TrmA family [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 451
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 54/103 (52%), Gaps = 7/103 (6%)
Query: 118 IGRVTRKKGSYAEMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLL 177
IG+++ K ME P R+ K +LP GD+++ +G + D ++ ID CL+
Sbjct: 106 IGKLSPKINDVIGME---NPFRYRNKTALPVGGDYVKP-QIGFYRKMTHD-IVPIDYCLI 160
Query: 178 QSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
Q E + V+ +++ + ++ + YD H G L+H+++R
Sbjct: 161 QHEFCDDVIKGMKELIKKHKIEV--YDERKHQGVLRHIVVRNS 201
>gi|308067596|ref|YP_003869201.1| RNA methyltransferase [Paenibacillus polymyxa E681]
gi|305856875|gb|ADM68663.1| Hypothetical RNA methyltransferase [Paenibacillus polymyxa E681]
Length = 534
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 12/74 (16%)
Query: 156 YALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHL 215
YA G H ++++++ CL+Q E + V+A V++ R LG+S Y+ + G L+H+
Sbjct: 225 YARGSH------RIVDMNTCLIQDERNDEVVARVKEIGR--MLGISAYNEETGRGLLRHV 276
Query: 216 ML----RTGSFMIC 225
++ RTG M+
Sbjct: 277 VVKTAFRTGEMMLV 290
>gi|153956154|ref|YP_001396919.1| tRNA (uracil-5-)-methyltransferase-like protein [Clostridium
kluyveri DSM 555]
gi|146349012|gb|EDK35548.1| TRNA (uracil-5-)-methyltransferase-related protein [Clostridium
kluyveri DSM 555]
Length = 469
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 58/116 (50%), Gaps = 19/116 (16%)
Query: 110 RVLPGEKFIGRVTRKKGSYAEMEFSFG---PKRWFPKESLP----KRGDHIENYALGLHA 162
+V+ GE+ I + GS ++ + G P R+ K LP K G +I YA H
Sbjct: 113 QVISGEQSI----HQHGSVTKLYHTIGMENPYRYRNKVQLPVGSSKNGINIGFYAKKSH- 167
Query: 163 PGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR 218
+++N+ C +QSE ++ ++ ++ + + + PY+ + G ++H+M+R
Sbjct: 168 -----EIINMTSCFIQSETSDKIVKLIRQWIE--KYNIEPYNEKNGKGIIRHIMIR 216
>gi|373469687|ref|ZP_09560861.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
bacterium oral taxon 082 str. F0431]
gi|371763984|gb|EHO52422.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
bacterium oral taxon 082 str. F0431]
Length = 464
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 19/113 (16%)
Query: 127 SYAEMEFSFG---PKRWFPKESLP---KRGDHIENYALG-LHAPGFFDKVLNIDKCLLQS 179
S E+E G P R+ K P K G +I Y G H+ ++ D C++
Sbjct: 119 SNVEIEEIIGMKDPIRYRNKSQFPFGRKNGKNITGYFAGRTHS------IVEFDDCIIGI 172
Query: 180 EPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMICAPV 228
E VL AV D+ + + YD S G ++H+++R TG M+C +
Sbjct: 173 EENKTVLKAVLDFME--KYDIPAYDEESGKGVVRHVLIRKGFATGELMVCIVI 223
>gi|225386438|ref|ZP_03756202.1| hypothetical protein CLOSTASPAR_00185 [Clostridium asparagiforme
DSM 15981]
gi|225047456|gb|EEG57702.1| hypothetical protein CLOSTASPAR_00185 [Clostridium asparagiforme
DSM 15981]
Length = 506
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 169 VLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMI 224
++ + CLL E +L V+++ + G+ PYD H G ++H ++R TG M+
Sbjct: 200 IIENEDCLLGVEENREILRIVREFM--EEFGVKPYDEEGHRGLVRHCLIRKGFATGEIMV 257
Query: 225 CAPV 228
C V
Sbjct: 258 CLVV 261
>gi|344995565|ref|YP_004797908.1| TrmA family RNA methyltransferase [Caldicellulosiruptor
lactoaceticus 6A]
gi|343963784|gb|AEM72931.1| RNA methyltransferase, TrmA family [Caldicellulosiruptor
lactoaceticus 6A]
Length = 451
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 54/103 (52%), Gaps = 7/103 (6%)
Query: 118 IGRVTRKKGSYAEMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLL 177
IG+++ K ME P R+ K +LP GD+++ +G + D ++ ID CL+
Sbjct: 106 IGKLSPKINDVIGME---NPFRYRNKTALPVGGDYVKP-QIGFYRKMTHD-IVPIDYCLI 160
Query: 178 QSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
Q E + V+ +++ + ++ + YD H G L+H+++R
Sbjct: 161 QHEFCDDVIKGMKELIKKHKIEV--YDERKHQGVLRHIVVRNS 201
>gi|302871091|ref|YP_003839727.1| TrmA family RNA methyltransferase [Caldicellulosiruptor obsidiansis
OB47]
gi|302573950|gb|ADL41741.1| RNA methyltransferase, TrmA family [Caldicellulosiruptor
obsidiansis OB47]
Length = 442
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Query: 118 IGRVTRKKGSYAEMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLL 177
IG++ + ME P R+ K +LP G+ +N +G + D +++ID CL+
Sbjct: 97 IGKLNPRINDVIGME---KPFRYRNKTALP-VGEDYKNPQIGFYKKMTHD-IVDIDYCLI 151
Query: 178 QSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
Q E + V+ ++D R + + Y H G L+H+++R
Sbjct: 152 QHEVCDDVIKGMKDLIR--KYNIEVYSEKKHQGVLRHIVVRNS 192
>gi|255308421|ref|ZP_05352592.1| putative RNA methyltransferase [Clostridium difficile ATCC 43255]
Length = 452
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 47/88 (53%), Gaps = 12/88 (13%)
Query: 137 PKRWFPKESLPKRGDHIENYALGLHAPGFFDK----VLNIDKCLLQSEPANLVLAAVQDY 192
P R+ K P + ++ G+ GF+ K V++ +KC++Q E + ++ ++ Y
Sbjct: 124 PYRYRNKAQFPIQKNN------GIPIIGFYKKKTHDVISTEKCVIQHEINDKIVKIIKTY 177
Query: 193 WRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
R ++ S YD +H+G ++HL+ + G
Sbjct: 178 IRAYKV--SIYDEKTHTGLIRHLVTKIG 203
>gi|126701016|ref|YP_001089913.1| 23S rRNA (uracil-5-)-methyltransferase RumA (23S
rRNA(M-5-U1939)-methyltransferase) [Clostridium
difficile 630]
gi|115252453|emb|CAJ70296.1| 23S rRNA (uracil-5-)-methyltransferase RumA (23S
rRNA(M-5-U1939)-methyltransferase) [Clostridium
difficile 630]
Length = 454
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 47/88 (53%), Gaps = 12/88 (13%)
Query: 137 PKRWFPKESLPKRGDHIENYALGLHAPGFFDK----VLNIDKCLLQSEPANLVLAAVQDY 192
P R+ K P + ++ G+ GF+ K V++ +KC++Q E + ++ ++ Y
Sbjct: 124 PYRYRNKAQFPIQKNN------GIPIIGFYKKKTHDVISTEKCVIQHEINDKIVKIIKTY 177
Query: 193 WRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
R ++ S YD +H+G ++HL+ + G
Sbjct: 178 IRAYKV--SIYDEKTHTGLIRHLVTKIG 203
>gi|423089903|ref|ZP_17078249.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium difficile
70-100-2010]
gi|357557433|gb|EHJ38976.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium difficile
70-100-2010]
Length = 452
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 47/88 (53%), Gaps = 12/88 (13%)
Query: 137 PKRWFPKESLPKRGDHIENYALGLHAPGFFDK----VLNIDKCLLQSEPANLVLAAVQDY 192
P R+ K P + ++ G+ GF+ K V++ +KC++Q E + ++ ++ Y
Sbjct: 124 PYRYRNKAQFPIQKNN------GIPIIGFYKKKTHDVISTEKCVIQHEINDKIVKIIKTY 177
Query: 193 WRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
R ++ S YD +H+G ++HL+ + G
Sbjct: 178 IRAYKV--SIYDEKTHTGLIRHLVTKIG 203
>gi|255094342|ref|ZP_05323820.1| putative RNA methyltransferase [Clostridium difficile CIP 107932]
gi|255316095|ref|ZP_05357678.1| putative RNA methyltransferase [Clostridium difficile QCD-76w55]
gi|255518756|ref|ZP_05386432.1| putative RNA methyltransferase [Clostridium difficile QCD-97b34]
gi|260684898|ref|YP_003216183.1| RNA methyltransferase [Clostridium difficile CD196]
gi|260688556|ref|YP_003219690.1| RNA methyltransferase [Clostridium difficile R20291]
gi|384362567|ref|YP_006200419.1| RNA methyltransferase [Clostridium difficile BI1]
gi|260211061|emb|CBA66419.1| putative RNA methyltransferase [Clostridium difficile CD196]
gi|260214573|emb|CBE07127.1| putative RNA methyltransferase [Clostridium difficile R20291]
Length = 452
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 47/88 (53%), Gaps = 12/88 (13%)
Query: 137 PKRWFPKESLPKRGDHIENYALGLHAPGFFDK----VLNIDKCLLQSEPANLVLAAVQDY 192
P R+ K P + ++ G+ GF+ K V++ +KC++Q E + ++ ++ Y
Sbjct: 124 PYRYRNKAQFPIQKNN------GIPIIGFYKKKTHDVISTEKCVIQHEINDKIVKIIKTY 177
Query: 193 WRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
R ++ S YD +H+G ++HL+ + G
Sbjct: 178 IRAYKV--SIYDEKTHTGLIRHLVTKIG 203
>gi|153854119|ref|ZP_01995427.1| hypothetical protein DORLON_01418 [Dorea longicatena DSM 13814]
gi|149753168|gb|EDM63099.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Dorea longicatena DSM
13814]
Length = 470
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 18/99 (18%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSFG + K G ALG+H G F ++N+ C + E +LA
Sbjct: 129 KMEFSFGDEY--------KDGP----LALGMHKRGSFHDIVNVTDCQIVDEDYRKILACT 176
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMI 224
+ R+ GL Y H G+ +HL++R TG ++
Sbjct: 177 LECARES--GLPYYHRMRHVGYFRHLLVRKAVKTGEILV 213
>gi|418324710|ref|ZP_12935940.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
pettenkoferi VCU012]
gi|365224983|gb|EHM66238.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
pettenkoferi VCU012]
Length = 454
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 41/63 (65%), Gaps = 6/63 (9%)
Query: 164 GFFDK----VLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRT 219
GFF + ++++++CL+Q N ++ A++ W D +LG+S Y+ S G ++H+++R+
Sbjct: 147 GFFRQRSHDIIDMEECLIQHPSQNEIMVALKQ-WFD-ELGVSVYNERSKRGLMRHVVIRS 204
Query: 220 GSF 222
G +
Sbjct: 205 GYY 207
>gi|291521011|emb|CBK79304.1| 23S rRNA m(5)U-1939 methyltransferase [Coprococcus catus GD/7]
Length = 463
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 20/100 (20%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIEN-YALGLHAPGFFDKVLNIDKCLLQSEPANLVLAA 188
+MEFSFG DH++ LGLH +L +D C + + VL
Sbjct: 138 KMEFSFGD-------------DHLDGPLTLGLHKKASTYDILTVDDCKIVHDDFTTVLKT 184
Query: 189 VQDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMI 224
V DY+ + + Y H+G+L+HL++R TG ++
Sbjct: 185 VLDYFTEHP--MPYYKKMKHTGYLRHLLVRRSETTGEMLV 222
>gi|421060616|ref|ZP_15523071.1| RNA methyltransferase, TrmA family, partial [Pelosinus fermentans
B3]
gi|392455922|gb|EIW32692.1| RNA methyltransferase, TrmA family, partial [Pelosinus fermentans
B3]
Length = 387
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 9/93 (9%)
Query: 129 AEMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAA 188
AE + + K FP ++ + A+G A G + ++N + C +Q E N V A
Sbjct: 53 AENSWYYRNKMQFPIGTVNGK------VAVGCFAQGTHN-IINTEHCYIQHEANNQVAQA 105
Query: 189 VQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+Q+ +LG+S YD + G ++H++ R G+
Sbjct: 106 LQEIV--TELGISTYDERTGQGTMRHVLGRVGT 136
>gi|325679453|ref|ZP_08159035.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ruminococcus albus 8]
gi|324108852|gb|EGC03086.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ruminococcus albus 8]
Length = 397
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 168 KVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRT 219
K++ +D C L+ E A ++ +V+ +D + + PYD+ S G L+H ++RT
Sbjct: 91 KIVAVDDCFLEDERAAPIVRSVKKLMKD--MRIPPYDIRSGRGILRHTLIRT 140
>gi|326791294|ref|YP_004309115.1| RNA methyltransferase, TrmA family [Clostridium lentocellum DSM
5427]
gi|326542058|gb|ADZ83917.1| RNA methyltransferase, TrmA family [Clostridium lentocellum DSM
5427]
Length = 451
Score = 42.0 bits (97), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 18/91 (19%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIEN--YALGLHAPGFFDKVLNIDKCLLQSEPANLVLA 187
+MEFSFG D +++ LG+H V+ +D CLL E + +L
Sbjct: 128 KMEFSFG--------------DEVKDGPMTLGMHRKHSTYDVITVDGCLLVDEDFSTILR 173
Query: 188 AVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR 218
+ DY +D L Y H+GF++++++R
Sbjct: 174 TILDYCKDNDLNY--YKKMQHTGFMRYVVIR 202
>gi|118586769|ref|ZP_01544205.1| RNA methyltransferase, TrmA family [Oenococcus oeni ATCC BAA-1163]
gi|118432762|gb|EAV39492.1| RNA methyltransferase, TrmA family [Oenococcus oeni ATCC BAA-1163]
Length = 458
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
Query: 73 YFKPIRGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAEME 132
Y K ++ QEL L Y+G GV KV D F V LPGE+ +TR SYA
Sbjct: 6 YSKLVKNQELVGDVIDLTYEGLGVVKVDD--FPVFIVNSLPGERIKFAITRVLNSYA--- 60
Query: 133 FSFGPKRWFPKESLPK-RGDHIENYALGL 160
FG KES + R DH E A G+
Sbjct: 61 --FGRVLEIIKESPDRVRADHPEMIASGI 87
>gi|219856479|ref|YP_002473601.1| hypothetical protein CKR_3136 [Clostridium kluyveri NBRC 12016]
gi|219570203|dbj|BAH08187.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 478
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 58/116 (50%), Gaps = 19/116 (16%)
Query: 110 RVLPGEKFIGRVTRKKGSYAEMEFSFG---PKRWFPKESLP----KRGDHIENYALGLHA 162
+V+ GE+ I + GS ++ + G P R+ K LP K G +I YA H
Sbjct: 122 QVISGEQSI----HQHGSVTKLYHTIGMENPYRYRNKVQLPVGSSKNGINIGFYAKKSH- 176
Query: 163 PGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR 218
+++N+ C +QSE ++ ++ ++ + + + PY+ + G ++H+M+R
Sbjct: 177 -----EIINMTSCFIQSETSDKIVKLIRQWIE--KYNIEPYNEKNGKGIIRHIMIR 225
>gi|291518465|emb|CBK73686.1| 23S rRNA m(5)U-1939 methyltransferase [Butyrivibrio fibrisolvens
16/4]
Length = 428
Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 24/102 (23%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIEN--YALGLHAPGFFDKVLNIDKCLLQSEPANLVLA 187
+MEFSFG D +++ LG+H G F V+ +D C + VLA
Sbjct: 132 KMEFSFG--------------DEVKDGPLTLGMHKKGSFYDVVTVDGCQIIDADMRRVLA 177
Query: 188 AVQDYWRDPQLGLSP-YDVHSHSGFLKHLMLR----TGSFMI 224
+Y+ + + P Y ++H G+L+HL++R TG ++
Sbjct: 178 ITLEYFANAK---QPYYRKNTHEGYLRHLLVRKAAKTGEILV 216
>gi|373470265|ref|ZP_09561402.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
bacterium oral taxon 082 str. F0431]
gi|371762848|gb|EHO51364.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
bacterium oral taxon 082 str. F0431]
Length = 476
Score = 41.6 bits (96), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 14/93 (15%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSFG ++ K GD ALG+H G ++N+ C + +L
Sbjct: 129 KMEFSFGDEK--------KDGD----LALGMHKKGSHYDIVNVFGCKIVDSDFTKLLELT 176
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGSF 222
+++++ + S + ++H+GFL+HL++R +
Sbjct: 177 LNFFKERNI--SYFHKNTHTGFLRHLLVRRSEY 207
>gi|157691441|ref|YP_001485903.1| TrmA family RNA methyltransferase [Bacillus pumilus SAFR-032]
gi|157680199|gb|ABV61343.1| TrmA family RNA methyltransferase [Bacillus pumilus SAFR-032]
Length = 465
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 43/74 (58%), Gaps = 11/74 (14%)
Query: 159 GLHAPGFFDK----VLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKH 214
GL A GF+ + +++++KCL+Q + V+ AV++ + G+ Y+ H G+L+H
Sbjct: 148 GLVA-GFYQQRTHEIIDMEKCLIQQSENDEVVQAVKEICQ--AFGIKAYNEERHKGWLRH 204
Query: 215 LMLR----TGSFMI 224
+M+R TG M+
Sbjct: 205 VMVRYGIATGEMMV 218
>gi|336434274|ref|ZP_08614071.1| hypothetical protein HMPREF0991_03190 [Lachnospiraceae bacterium
2_1_58FAA]
gi|336013956|gb|EGN43821.1| hypothetical protein HMPREF0991_03190 [Lachnospiraceae bacterium
2_1_58FAA]
Length = 559
Score = 41.6 bits (96), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 14/92 (15%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSFG + K G LGLH G VL C L + +L V
Sbjct: 130 KMEFSFGDEY--------KDGP----LTLGLHKKGSTYDVLTASDCKLVHDDMTKILNCV 177
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+Y+++ + S Y H+G+L+HL+LR G
Sbjct: 178 LEYFKERNV--SYYKKMQHTGYLRHLLLRRGD 207
>gi|154506231|ref|ZP_02042969.1| hypothetical protein RUMGNA_03773 [Ruminococcus gnavus ATCC 29149]
gi|153793730|gb|EDN76150.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Ruminococcus gnavus
ATCC 29149]
Length = 559
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 14/91 (15%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSFG + K G LGLH G VL C L + +L V
Sbjct: 130 KMEFSFGDEY--------KDGP----LTLGLHKKGSTYDVLTASDCKLVHDDMTKILNCV 177
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
+Y+++ + S Y H+G+L+HL+LR G
Sbjct: 178 LEYFKERNV--SYYKKMQHTGYLRHLLLRRG 206
>gi|392962789|ref|ZP_10328218.1| RNA methyltransferase, TrmA family [Pelosinus fermentans DSM 17108]
gi|421053147|ref|ZP_15516129.1| RNA methyltransferase, TrmA family [Pelosinus fermentans B4]
gi|421066327|ref|ZP_15527949.1| RNA methyltransferase, TrmA family [Pelosinus fermentans A12]
gi|421073867|ref|ZP_15534916.1| RNA methyltransferase, TrmA family [Pelosinus fermentans A11]
gi|392442188|gb|EIW19778.1| RNA methyltransferase, TrmA family [Pelosinus fermentans B4]
gi|392443856|gb|EIW21365.1| RNA methyltransferase, TrmA family [Pelosinus fermentans A11]
gi|392452030|gb|EIW28999.1| RNA methyltransferase, TrmA family [Pelosinus fermentans DSM 17108]
gi|392456885|gb|EIW33615.1| RNA methyltransferase, TrmA family [Pelosinus fermentans A12]
Length = 460
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 9/93 (9%)
Query: 129 AEMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAA 188
AE + + K FP ++ + A+G A G + ++N + C +Q E N V A
Sbjct: 126 AENSWYYRNKMQFPIGTVNGK------VAVGCFAQGTHN-IINTEHCYIQHEANNQVAQA 178
Query: 189 VQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+Q+ +LG+S YD + G ++H++ R G+
Sbjct: 179 LQEIV--TELGISTYDERTGQGTMRHVLGRVGT 209
>gi|225026873|ref|ZP_03716065.1| hypothetical protein EUBHAL_01127 [Eubacterium hallii DSM 3353]
gi|224955797|gb|EEG37006.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacterium hallii DSM
3353]
Length = 471
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 7/96 (7%)
Query: 137 PKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDP 196
P + K P D N G +A V N + C +Q+E + ++ V Y ++
Sbjct: 138 PWHYRNKAQFPVGYDKEGNLVAGFYAGRTHSIVANTN-CAIQAEVTHPIVEKVLTYMKEN 196
Query: 197 QLGLSPYDVHSHSGFLKHLMLR----TGSFMICAPV 228
++ S YD +HSG ++H++ R TG M+C V
Sbjct: 197 KI--SAYDEKNHSGLVRHILTRIGFTTGEIMVCLIV 230
>gi|254977015|ref|ZP_05273487.1| putative RNA methyltransferase [Clostridium difficile QCD-66c26]
gi|255651934|ref|ZP_05398836.1| putative RNA methyltransferase [Clostridium difficile QCD-37x79]
gi|306521684|ref|ZP_07408031.1| putative RNA methyltransferase [Clostridium difficile QCD-32g58]
Length = 544
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 46/88 (52%), Gaps = 12/88 (13%)
Query: 137 PKRWFPKESLPKRGDHIENYALGLHAPGFFDK----VLNIDKCLLQSEPANLVLAAVQDY 192
P R+ K P + ++ G+ GF+ K V++ +KC++Q E + ++ ++ Y
Sbjct: 124 PYRYRNKAQFPIQKNN------GIPIIGFYKKKTHDVISTEKCVIQHEINDKIVKIIKTY 177
Query: 193 WRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
R +S YD +H+G ++HL+ + G
Sbjct: 178 IR--AYKVSIYDEKTHTGLIRHLVTKIG 203
>gi|404483407|ref|ZP_11018630.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridiales
bacterium OBRC5-5]
gi|404343680|gb|EJZ70041.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridiales
bacterium OBRC5-5]
Length = 463
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 19/113 (16%)
Query: 127 SYAEMEFSFG---PKRWFPKESLP---KRGDHIENYALG-LHAPGFFDKVLNIDKCLLQS 179
S E+E G P R+ K P K G +I Y G H+ ++ D C++
Sbjct: 119 SNVEIEEIIGMEDPIRYRNKSQFPFGRKDGKNITGYFAGRTHS------IVEFDDCIIGI 172
Query: 180 EPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMICAPV 228
E VL AV D+ + + YD S G ++H+++R TG M+C +
Sbjct: 173 EENKTVLKAVLDFME--KYDIPAYDEESGKGVVRHVLIRKGFATGELMVCIVI 223
>gi|255523417|ref|ZP_05390386.1| RNA methyltransferase, TrmA family [Clostridium carboxidivorans P7]
gi|255512875|gb|EET89146.1| RNA methyltransferase, TrmA family [Clostridium carboxidivorans P7]
Length = 458
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 53/104 (50%), Gaps = 7/104 (6%)
Query: 118 IGRVTRKKGSYAEMEFSFG---PKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDK 174
I R+ + K S + + G P R+ K LP G+ +G +A + ++N+D
Sbjct: 108 IERIGKLKISEVNLHDTIGMNDPYRYRNKVQLP-VGEKNGEVNIGFYAQRTHE-IINMDT 165
Query: 175 CLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR 218
C +Q E A+ VL ++ + + + + Y+ H+G ++H+M+R
Sbjct: 166 CNIQHEAADKVLKLIKSWMK--KYNIKSYNEQLHTGSIRHIMVR 207
>gi|291531353|emb|CBK96938.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacterium siraeum
70/3]
Length = 383
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 169 VLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
++ ID C+L + A+ ++ +++ R L PYD + GFL+H+++R G
Sbjct: 83 IVGIDSCMLDDKRADEIIVGIRELLR--SFKLHPYDEGTECGFLRHVLVRVG 132
>gi|402298016|ref|ZP_10817747.1| RNA methyltransferase [Bacillus alcalophilus ATCC 27647]
gi|401726787|gb|EJS99999.1| RNA methyltransferase [Bacillus alcalophilus ATCC 27647]
Length = 461
Score = 41.6 bits (96), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 10/70 (14%)
Query: 164 GFFDK----VLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR- 218
GF+ K ++++D C++Q + ++ + AV++ + G+ YD H G L+H+++R
Sbjct: 150 GFYQKRSHRIIDMDSCIIQQKENDIAVQAVKEIA--SRYGIRAYDEEKHRGTLRHVVVRQ 207
Query: 219 ---TGSFMIC 225
TG MI
Sbjct: 208 GKKTGELMIV 217
>gi|421861714|ref|ZP_16293662.1| methyltransferase [Paenibacillus popilliae ATCC 14706]
gi|410828753|dbj|GAC44099.1| methyltransferase [Paenibacillus popilliae ATCC 14706]
Length = 460
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 131 MEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQ 190
ME+ P R+ K +P D +G + ++++ D LLQ + + + AV+
Sbjct: 125 MEY---PWRYRNKSQMPIGTDPQTGELIGGYFAKASHRIIDTDVSLLQHKRNDKAMRAVK 181
Query: 191 DYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
R + G++PY+ +H+G L+H+++R G
Sbjct: 182 RIAR--KYGIAPYNEETHTGLLRHVIMRVG 209
>gi|310779073|ref|YP_003967406.1| 23S rRNA m(5)U-1939 methyltransferase [Ilyobacter polytropus DSM
2926]
gi|309748396|gb|ADO83058.1| 23S rRNA m(5)U-1939 methyltransferase [Ilyobacter polytropus DSM
2926]
Length = 453
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 156 YALGLHAPGFFDK----VLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGF 211
Y G GFF K V + + +LQS+ AN + +++ ++ + YD H G
Sbjct: 138 YKDGKIISGFFKKKSHEVFEVSENMLQSKLANRITKELKEILNKKRIPV--YDEKKHRGI 195
Query: 212 LKHLMLRTGSF 222
L+H+M+RT SF
Sbjct: 196 LRHVMVRTNSF 206
>gi|384049105|ref|YP_005497122.1| TrmA family RNA methyltransferase [Bacillus megaterium WSH-002]
gi|345446796|gb|AEN91813.1| RNA methyltransferase, TrmA family [Bacillus megaterium WSH-002]
Length = 457
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 10/70 (14%)
Query: 164 GFFDK----VLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR- 218
GF+ + ++N+D CL+Q + + V+ AV+ + G+S Y H G L+H+M R
Sbjct: 150 GFYQQRSHDIINMDACLIQQQANDDVVQAVKSICE--KHGVSAYQEQKHKGSLRHIMARY 207
Query: 219 ---TGSFMIC 225
TG M+
Sbjct: 208 GLVTGEIMVV 217
>gi|295702483|ref|YP_003595558.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus megaterium
DSM 319]
gi|294800142|gb|ADF37208.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Bacillus megaterium
DSM 319]
Length = 457
Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 10/70 (14%)
Query: 164 GFFDK----VLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR- 218
GF+ + ++N+D CL+Q + + V+ AV+ + G+S Y H G L+H+M R
Sbjct: 150 GFYQQRSHDIINMDACLIQQQANDDVVQAVKSICE--KHGVSAYQEQKHKGSLRHIMARY 207
Query: 219 ---TGSFMIC 225
TG M+
Sbjct: 208 GLVTGEIMVV 217
>gi|456862165|gb|EMF80743.1| tRNA (Uracil-5-)-methyltransferase domain protein [Leptospira
weilii serovar Topaz str. LT2116]
Length = 403
Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 157 ALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRD-PQLGLSPYDVHSHSGFLKHL 215
+G G F +++++ C +QSE +N+ L + + P L PY+ S SGFLK+L
Sbjct: 120 VIGQRKAGSFRDIVDLESCFIQSEESNMELKRFRSLISEFPDL---PYNRKSDSGFLKYL 176
Query: 216 MLRTG 220
LR
Sbjct: 177 TLRKA 181
>gi|402828146|ref|ZP_10877037.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Slackia sp. CM382]
gi|402286747|gb|EJU35209.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Slackia sp. CM382]
Length = 398
Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 168 KVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
+V++ +CL++++ A ++ +V+ P+L + PYD + +GFL+H +R G
Sbjct: 92 RVIDSSECLIENQVAKAIIQSVRQLM--PKLRIEPYDEDADAGFLRHAQVRVG 142
>gi|296184699|ref|ZP_06853110.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
carboxidivorans P7]
gi|296050481|gb|EFG89904.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
carboxidivorans P7]
Length = 463
Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 53/104 (50%), Gaps = 7/104 (6%)
Query: 118 IGRVTRKKGSYAEMEFSFG---PKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDK 174
I R+ + K S + + G P R+ K LP G+ +G +A + ++N+D
Sbjct: 113 IERIGKLKISEVNLHDTIGMNDPYRYRNKVQLP-VGEKNGEVNIGFYAQRTHE-IINMDT 170
Query: 175 CLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR 218
C +Q E A+ VL ++ + + + + Y+ H+G ++H+M+R
Sbjct: 171 CNIQHEAADKVLKLIKSWMK--KYNIKSYNEQLHTGSIRHIMVR 212
>gi|169825840|ref|YP_001695998.1| RNA methyltransferase [Lysinibacillus sphaericus C3-41]
gi|168990328|gb|ACA37868.1| Hypothetical RNA methyltransferase [Lysinibacillus sphaericus
C3-41]
Length = 459
Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 11/80 (13%)
Query: 154 ENYALGLHAPGFFD----KVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHS 209
EN A G GF+ ++++++CL+Q+ A+ +L ++ +G+ PY+ SH
Sbjct: 143 ENEA-GQAIAGFYKTKTHSIVDMERCLIQTGEADAILVGLKKEL--VAIGMRPYNELSHE 199
Query: 210 GFLKHLMLR----TGSFMIC 225
G L+H+++R TG M+
Sbjct: 200 GMLRHVVIRKARATGEVMVV 219
>gi|239905414|ref|YP_002952153.1| 23S rRNA (uracil-5-)-methyltransferase [Desulfovibrio magneticus
RS-1]
gi|239795278|dbj|BAH74267.1| 23S rRNA (uracil-5-)-methyltransferase [Desulfovibrio magneticus
RS-1]
Length = 450
Score = 41.2 bits (95), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 81 ELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAE 130
ELEL LA G+GV ++ G VV D LPGE + +VT+ K +AE
Sbjct: 8 ELELSVARLALGGRGVARL--DGMVVFVDGALPGETVMAKVTQVKKGFAE 55
>gi|418695303|ref|ZP_13256323.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Leptospira
kirschneri str. H1]
gi|421108119|ref|ZP_15568663.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Leptospira
kirschneri str. H2]
gi|409956757|gb|EKO15678.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Leptospira
kirschneri str. H1]
gi|410006820|gb|EKO60557.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Leptospira
kirschneri str. H2]
Length = 454
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 158 LGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQD-YWRDPQLGLSPYDVHSHSGFLKHLM 216
+G G F +++++ CL+QSE +N L ++ + P L PYD S SGFLK+L
Sbjct: 137 VGQREAGSFRHIVDLETCLIQSEESNEELYRFRNLILKFPNL---PYDRKSDSGFLKYLT 193
Query: 217 LRTG 220
LR
Sbjct: 194 LRKA 197
>gi|403070842|ref|ZP_10912174.1| RNA methyltransferase [Oceanobacillus sp. Ndiop]
Length = 456
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 36/62 (58%), Gaps = 7/62 (11%)
Query: 164 GFFDK-----VLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR 218
GF+ K + N + C +Q E N ++ A ++ ++G+ Y+ +HSG L+H+M+R
Sbjct: 148 GFYQKRSHRILENTETCSIQDETINEMVKATREIAN--RIGIKAYNEENHSGELRHIMVR 205
Query: 219 TG 220
TG
Sbjct: 206 TG 207
>gi|269217160|ref|ZP_06161014.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Slackia exigua ATCC
700122]
gi|269129297|gb|EEZ60382.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Slackia exigua ATCC
700122]
Length = 376
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 34/53 (64%), Gaps = 2/53 (3%)
Query: 168 KVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
+V++ +CL++++ A ++ +V+ P+L + PYD + +GFL+H +R G
Sbjct: 70 RVIDSSECLIENQVAKAIIQSVRQLM--PKLRIEPYDEDADTGFLRHAQVRVG 120
>gi|421110763|ref|ZP_15571254.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Leptospira
santarosai str. JET]
gi|410803860|gb|EKS09987.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Leptospira
santarosai str. JET]
Length = 451
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 157 ALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRD-PQLGLSPYDVHSHSGFLKHL 215
+G G F +++++ C +QSE +N L + + P L PYD S SGFLK+L
Sbjct: 135 VIGQREAGSFRYIVDLESCFIQSEESNAELKRFRSMISEFPDL---PYDRKSDSGFLKYL 191
Query: 216 MLRTG 220
LR
Sbjct: 192 TLRKA 196
>gi|410462511|ref|ZP_11316086.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Desulfovibrio
magneticus str. Maddingley MBC34]
gi|409984377|gb|EKO40691.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Desulfovibrio
magneticus str. Maddingley MBC34]
Length = 450
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 81 ELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAE 130
ELEL LA G+GV ++ G VV D LPGE + +VT+ K +AE
Sbjct: 8 ELELSVARLALGGRGVARL--DGMVVFVDGALPGETVMAKVTQVKKGFAE 55
>gi|302388260|ref|YP_003824082.1| TrmA family RNA methyltransferase [Clostridium saccharolyticum WM1]
gi|302198888|gb|ADL06459.1| RNA methyltransferase, TrmA family [Clostridium saccharolyticum
WM1]
Length = 454
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 137 PKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDP 196
P R+ K P D N G +A G +++ + CLL E VL ++ +
Sbjct: 125 PWRYRNKAQFPWGLDKDGNIVTGFYA-GRTHSIISCEDCLLGIEENQEVLRQIKAHME-- 181
Query: 197 QLGLSPYDVHSHSGFLKHLML----RTGSFMICAPV 228
+ L PY+ SH G ++H ++ RTG M+C +
Sbjct: 182 RYHLIPYEEASHKGLIRHTLIRKGFRTGEIMVCQVI 217
>gi|199597359|ref|ZP_03210790.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
rhamnosus HN001]
gi|199591875|gb|EDY99950.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
rhamnosus HN001]
Length = 458
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 78 RGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYA 129
+ Q+LE+ E L Y+G GV KVA GF + + LPGEK V + + Y
Sbjct: 11 KNQDLEVTIEDLTYEGMGVAKVA--GFPLFIEDALPGEKMQVHVLKTQKQYG 60
>gi|315231713|ref|YP_004072149.1| tRNA (Uracil54-C5-)-methyltransferase [Thermococcus barophilus MP]
gi|315184741|gb|ADT84926.1| tRNA (Uracil54-C5-)-methyltransferase [Thermococcus barophilus MP]
Length = 417
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 153 IENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFL 212
I +G G + V++I+KC++ E + L +++++ D L P+++ GF+
Sbjct: 119 ISTEGIGFRRRGTWWDVVDIEKCIVFGEKSGRALKSLREFIED--FKLQPWNLRKSEGFM 176
Query: 213 KHLMLRTGSF 222
+++++R G F
Sbjct: 177 RYIVMREGKF 186
>gi|410451654|ref|ZP_11305656.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Leptospira
sp. Fiocruz LV3954]
gi|410014420|gb|EKO76550.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Leptospira
sp. Fiocruz LV3954]
Length = 451
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 157 ALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRD-PQLGLSPYDVHSHSGFLKHL 215
+G G F +++++ C +QSE +N L + + P L PYD S SGFLK+L
Sbjct: 135 VIGQREAGSFRYIVDLESCFIQSEESNAELKRFRSMISEFPDL---PYDRKSDSGFLKYL 191
Query: 216 MLRTG 220
LR
Sbjct: 192 TLRKA 196
>gi|229551874|ref|ZP_04440599.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
rhamnosus LMS2-1]
gi|229314818|gb|EEN80791.1| TrmA family tRNA (uracil-5-)-methyltransferase [Lactobacillus
rhamnosus LMS2-1]
Length = 459
Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 78 RGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYA 129
+ Q+LE+ E L Y+G GV KVA GF + + LPGEK V + + Y
Sbjct: 14 KNQDLEVTIEDLTYEGMGVAKVA--GFPLFIEDALPGEKMQVHVLKTQKQYG 63
>gi|315303628|ref|ZP_07874164.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria ivanovii FSL
F6-596]
gi|313628001|gb|EFR96598.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Listeria ivanovii FSL
F6-596]
Length = 453
Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 43/211 (20%), Positives = 77/211 (36%), Gaps = 67/211 (31%)
Query: 78 RGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSY--AEME--- 132
+ Q +E+ E L + G GV K+ G+ + LPGEK ++T+ SY A ME
Sbjct: 8 KNQSIEITIEDLTHDGSGVGKI--DGYPLFIPNTLPGEKVTAKITKLNKSYGFARMENIE 65
Query: 133 ------------------------FSFGPKRWFPKESLPKRGDHIENY------ALGLHA 162
S+ + F + + + I N LG+
Sbjct: 66 VISVDRVEPPCAVYSKCGGCSLQHLSYEGQLKFKRNQVEETMKRIGNLDVQVKETLGMEN 125
Query: 163 P--------------------GFFDK----VLNIDKCLLQSEPANLVLAAVQDYWRDPQL 198
P GF+ K ++++ CL+ +E + + ++ +
Sbjct: 126 PWRYRNKSQVPVGFVNGKLTAGFYQKRSHEIIDMTTCLIHNEQGDYAVQKAREIL--AKY 183
Query: 199 GLSPYDVHSHSGFLKHLMLR----TGSFMIC 225
G PY+ + G ++H+M R TG M+
Sbjct: 184 GTEPYNEKTGKGDIRHIMTRVAHTTGQLMLV 214
>gi|253681766|ref|ZP_04862563.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
D str. 1873]
gi|253561478|gb|EES90930.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
D str. 1873]
Length = 494
Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 137 PKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDP 196
P R+ K LP G+ +G +AP D +++++ C +Q E + V++ + + +
Sbjct: 165 PYRYRNKVQLP-VGEENGEIKIGFYAPRSHD-IIDMNICYIQDEVGDKVVSLAKQWMQ-- 220
Query: 197 QLGLSPYDVHSHSGFLKHLMLRTG 220
+ + PY+ ++G ++H+M+R G
Sbjct: 221 KYNIKPYNEEKNTGIVRHVMIRRG 244
>gi|331268633|ref|YP_004395125.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
BKT015925]
gi|329125183|gb|AEB75128.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
BKT015925]
Length = 495
Score = 41.2 bits (95), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 137 PKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDP 196
P R+ K LP G+ +G +AP + ++++D C +Q E + V++ +++
Sbjct: 167 PYRYRNKVQLP-VGEENGEIKIGFYAPRSHN-IIDMDICYIQDEVGDTVVSLTREWME-- 222
Query: 197 QLGLSPYDVHSHSGFLKHLMLRTG 220
+ + PY+ + G ++H+M+R G
Sbjct: 223 KYNIKPYNEEKNVGIVRHIMIRRG 246
>gi|258508017|ref|YP_003170768.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus rhamnosus GG]
gi|385827700|ref|YP_005865472.1| RNA methyltransferase [Lactobacillus rhamnosus GG]
gi|257147944|emb|CAR86917.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus rhamnosus GG]
gi|259649345|dbj|BAI41507.1| RNA methyltransferase [Lactobacillus rhamnosus GG]
Length = 455
Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 78 RGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYA 129
+ Q+LE+ E L Y+G GV KVA GF + + LPGEK V + + Y
Sbjct: 8 KNQDLEVTIEDLTYEGMGVAKVA--GFPLFIEDALPGEKMQVHVLKTQKQYG 57
>gi|423077931|ref|ZP_17066621.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
rhamnosus ATCC 21052]
gi|357552809|gb|EHJ34573.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
rhamnosus ATCC 21052]
Length = 460
Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 78 RGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYA 129
+ Q+LE+ E L Y+G GV KVA GF + + LPGEK V + + Y
Sbjct: 14 KNQDLEVTIEDLTYEGMGVAKVA--GFPLFIEDALPGEKMQVHVLKTQKQYG 63
>gi|258539292|ref|YP_003173791.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus rhamnosus Lc 705]
gi|385834931|ref|YP_005872705.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
rhamnosus ATCC 8530]
gi|257150968|emb|CAR89940.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus rhamnosus Lc 705]
gi|355394422|gb|AER63852.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus
rhamnosus ATCC 8530]
Length = 453
Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 78 RGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYA 129
+ Q+LE+ E L Y+G GV KVA GF + + LPGEK V + + Y
Sbjct: 8 KNQDLEVTIEDLTYEGMGVAKVA--GFPLFIEDALPGEKMQVHVLKTQKQYG 57
>gi|418070310|ref|ZP_12707585.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus rhamnosus R0011]
gi|357539730|gb|EHJ23747.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus rhamnosus R0011]
Length = 457
Score = 41.2 bits (95), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 78 RGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYA 129
+ Q+LE+ E L Y+G GV KVA GF + + LPGEK V + + Y
Sbjct: 11 KNQDLEVTIEDLTYEGMGVAKVA--GFPLFIEDALPGEKMQVHVLKTQKQYG 60
>gi|421769492|ref|ZP_16206199.1| RNA methyltransferase TrmA family [Lactobacillus rhamnosus LRHMDP2]
gi|421772228|ref|ZP_16208884.1| RNA methyltransferase, TrmA family [Lactobacillus rhamnosus
LRHMDP3]
gi|411183796|gb|EKS50931.1| RNA methyltransferase, TrmA family [Lactobacillus rhamnosus
LRHMDP3]
gi|411184623|gb|EKS51755.1| RNA methyltransferase TrmA family [Lactobacillus rhamnosus LRHMDP2]
Length = 454
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 78 RGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYA 129
+ Q+LE+ E L Y+G GV KVA GF + + LPGEK V + + Y
Sbjct: 8 KNQDLEVTIEDLTYEGMGVAKVA--GFPLFIEDALPGEKMQVHVLKTQKQYG 57
>gi|355630232|ref|ZP_09050761.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp.
7_3_54FAA]
gi|354818740|gb|EHF03206.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp.
7_3_54FAA]
Length = 458
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 22/100 (22%)
Query: 131 MEFSFGPKRWFPKESLPKRGDHIEN--YALGLHAPGFFDKVLNIDKCLLQSEPANLVLAA 188
MEFSFG D +++ ALG+H G F V+ +C + + +L
Sbjct: 128 MEFSFG--------------DEVKDGPLALGMHKRGSFYDVVTTGECRIVHKDFCDILLC 173
Query: 189 VQDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMI 224
+ Y+ + ++G Y H+G+L+HL++R TG ++
Sbjct: 174 TKAYFEEKEVGF--YKKMQHTGYLRHLLVRRAVKTGEILL 211
>gi|407978257|ref|ZP_11159090.1| TrmA family RNA methyltransferase [Bacillus sp. HYC-10]
gi|407415264|gb|EKF36871.1| TrmA family RNA methyltransferase [Bacillus sp. HYC-10]
Length = 459
Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 10/69 (14%)
Query: 164 GFFDK----VLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR- 218
GF+ + +++++KCL+Q + + AV+D G+ Y+ H G+L+H+M+R
Sbjct: 152 GFYQQRTHEIIDMEKCLIQQSENDEAVQAVKDICN--AFGIKAYNEERHKGWLRHVMVRY 209
Query: 219 ---TGSFMI 224
TG M+
Sbjct: 210 GIATGEMMV 218
>gi|238917477|ref|YP_002930994.1| hypothetical protein EUBELI_01555 [Eubacterium eligens ATCC 27750]
gi|238872837|gb|ACR72547.1| Hypothetical protein EUBELI_01555 [Eubacterium eligens ATCC 27750]
Length = 470
Score = 40.8 bits (94), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 23/119 (19%)
Query: 112 LPGEKFIGR-VTRKKGSYAEMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVL 170
LP E IG VT + + +MEFSFG + K G ALGLH ++
Sbjct: 122 LPFEGIIGSPVTEEYRN--KMEFSFGDEY--------KDGP----LALGLHKRNSMYDIV 167
Query: 171 NIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVH-SHSGFLKHLMLR----TGSFMI 224
+ +C + E +L VQDY + +L P+ SH G+L+HL++R TG ++
Sbjct: 168 PVTECKIIDEDYRKILTCVQDYAIEKEL---PFQHKLSHEGYLRHLLVRKSVKTGQILV 223
>gi|363896754|ref|ZP_09323303.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Oribacterium sp. ACB7]
gi|361960319|gb|EHL13568.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Oribacterium sp. ACB7]
Length = 543
Score = 40.8 bits (94), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 53/100 (53%), Gaps = 10/100 (10%)
Query: 132 EFSFGPKRWFPKESLPKRGDHIENY-ALGLHAPGFFD-KVLNIDKCLLQSEPANLVLAAV 189
E + G + + + P++ E+Y +L + GF +++ + CL+ SE L+L +
Sbjct: 151 EIALGGRAFEEGKKAPEK--EQESYDSLDIGFYGFHSHRIIETEDCLINSEENPLILNCI 208
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMIC 225
+++ R+ Q +S Y+ + G L+H+ LR TG ++C
Sbjct: 209 KEWAREYQ--ISGYEEETGKGLLRHIFLRKGFVTGEILLC 246
>gi|323484926|ref|ZP_08090281.1| hypothetical protein HMPREF9474_02032 [Clostridium symbiosum
WAL-14163]
gi|323401807|gb|EGA94150.1| hypothetical protein HMPREF9474_02032 [Clostridium symbiosum
WAL-14163]
Length = 457
Score = 40.8 bits (94), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 22/100 (22%)
Query: 131 MEFSFGPKRWFPKESLPKRGDHIEN--YALGLHAPGFFDKVLNIDKCLLQSEPANLVLAA 188
MEFSFG D +++ ALG+H G F V+ +C + + +L
Sbjct: 128 MEFSFG--------------DEVKDGPLALGMHKRGSFYDVVTTGECRIVHKDFCDILLC 173
Query: 189 VQDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMI 224
+ Y+ + ++G Y H+G+L+HL++R TG ++
Sbjct: 174 TKAYFEEKEVGF--YKKMQHTGYLRHLLVRRAVKTGEILL 211
>gi|404416612|ref|ZP_10998429.1| RNA methyltransferase [Staphylococcus arlettae CVD059]
gi|403491016|gb|EJY96544.1| RNA methyltransferase [Staphylococcus arlettae CVD059]
Length = 457
Score = 40.8 bits (94), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 136 GPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRD 195
P R+ K +P + + +G + D ++N+D+CL+Q E ++ ++ +
Sbjct: 124 NPWRYRNKSQIPIGKNSNDQAIMGFYRQRSHD-IINMDECLIQDEQHQHMMNFIKQCCNE 182
Query: 196 PQLGLSPYDVHSHSGFLKHLMLRTG 220
L +S Y+ + G L+HL++RTG
Sbjct: 183 --LNISIYNEKTKKGLLRHLVVRTG 205
>gi|354583861|ref|ZP_09002758.1| RNA methyltransferase, TrmA family [Paenibacillus lactis 154]
gi|353197123|gb|EHB62616.1| RNA methyltransferase, TrmA family [Paenibacillus lactis 154]
Length = 544
Score = 40.8 bits (94), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 12/73 (16%)
Query: 156 YALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHL 215
YA G H ++++++ CL+Q E + V+ V+ R +LG++ YD S G L+H+
Sbjct: 239 YARGSH------RIVDMETCLIQHEQNDEVVRRVKAIGR--RLGITAYDEESGQGLLRHV 290
Query: 216 MLR----TGSFMI 224
+++ TG MI
Sbjct: 291 VVKIGFATGEMMI 303
>gi|253575073|ref|ZP_04852412.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Paenibacillus sp. oral
taxon 786 str. D14]
gi|251845529|gb|EES73538.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Paenibacillus sp. oral
taxon 786 str. D14]
Length = 333
Score = 40.8 bits (94), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 42/74 (56%), Gaps = 12/74 (16%)
Query: 156 YALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHL 215
YA G H ++++++ CL+Q E + V++ V+ R +LG++ YD + G L+H+
Sbjct: 27 YARGSH------RIIDMETCLIQHESNDDVISRVKAIGR--RLGITAYDEETGQGLLRHV 78
Query: 216 ML----RTGSFMIC 225
++ RTG M+
Sbjct: 79 VVKVGFRTGEMMLV 92
>gi|323693629|ref|ZP_08107829.1| RNA methyltransferase [Clostridium symbiosum WAL-14673]
gi|323502320|gb|EGB18182.1| RNA methyltransferase [Clostridium symbiosum WAL-14673]
Length = 461
Score = 40.8 bits (94), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 22/100 (22%)
Query: 131 MEFSFGPKRWFPKESLPKRGDHIEN--YALGLHAPGFFDKVLNIDKCLLQSEPANLVLAA 188
MEFSFG D +++ ALG+H G F V+ +C + + +L
Sbjct: 128 MEFSFG--------------DEVKDGPLALGMHKRGSFYDVVTTGECRIVHKDFCDILLC 173
Query: 189 VQDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMI 224
+ Y+ + ++G Y H+G+L+HL++R TG ++
Sbjct: 174 TKAYFEEKEVGF--YKKMQHTGYLRHLLVRRAVKTGEILL 211
>gi|291527500|emb|CBK93086.1| 23S rRNA m(5)U-1939 methyltransferase [Eubacterium rectale M104/1]
Length = 493
Score = 40.8 bits (94), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Query: 137 PKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDP 196
P R+ K P D N G +A + ++ ++ C L P N + + W +
Sbjct: 126 PYRYRNKAQFPVGYDRDGNIVTGFYASRSHN-IIPVEDCRL-GVPQNKEILDIIKEWMN- 182
Query: 197 QLGLSPYDVHSHSGFLKHLMLRTG----SFMIC 225
+ G++PYD ++H G ++H+++R G M+C
Sbjct: 183 ECGITPYDENTHKGLVRHVLIRYGFTSKQIMVC 215
>gi|419859211|ref|ZP_14381866.1| tRNA (uracil-5-)-methyltransferase related enzyme [Oenococcus oeni
DSM 20252 = AWRIB129]
gi|410496760|gb|EKP88239.1| tRNA (uracil-5-)-methyltransferase related enzyme [Oenococcus oeni
DSM 20252 = AWRIB129]
Length = 458
Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
Query: 73 YFKPIRGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAEME 132
Y K ++ QEL L ++G GV KV D F V LPGE+ +TR SYA
Sbjct: 6 YSKLVKNQELTGDVIDLTFEGLGVVKVDD--FPVFIVNSLPGERIKFAITRVLNSYA--- 60
Query: 133 FSFGPKRWFPKESLPK-RGDHIENYALGL 160
FG KES + R DH E A G+
Sbjct: 61 --FGRVLEIIKESPDRVRADHPEMIASGI 87
>gi|340356361|ref|ZP_08679010.1| 23S rRNA (uracil-5-)-methyltransferase [Sporosarcina newyorkensis
2681]
gi|339621454|gb|EGQ26012.1| 23S rRNA (uracil-5-)-methyltransferase [Sporosarcina newyorkensis
2681]
Length = 455
Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 37/59 (62%), Gaps = 6/59 (10%)
Query: 164 GFFD----KVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR 218
GF+ ++++ D C++Q+ A+ ++A ++ + QLG+ YD +H G L+HL++R
Sbjct: 147 GFYKTRTHQIVDTDVCIIQTTEADELMAMLK--RKIQQLGIETYDERTHKGMLRHLIVR 203
>gi|238925258|ref|YP_002938775.1| hypothetical RNA methyltransferase-like protein [Eubacterium
rectale ATCC 33656]
gi|238876934|gb|ACR76641.1| hypothetical RNA methyltransferase-like protein [Eubacterium
rectale ATCC 33656]
Length = 493
Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Query: 137 PKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDP 196
P R+ K P D N G +A + ++ ++ C L P N + + W +
Sbjct: 126 PYRYRNKAQFPVGYDRDGNIVTGFYASRSHN-IIPVEDCRL-GVPQNKEILDIIKEWMN- 182
Query: 197 QLGLSPYDVHSHSGFLKHLMLRTG----SFMIC 225
+ G++PYD ++H G ++H+++R G M+C
Sbjct: 183 ECGITPYDENTHKGLVRHVLIRYGFTSKQIMVC 215
>gi|303246914|ref|ZP_07333190.1| RNA methyltransferase, TrmA family [Desulfovibrio fructosovorans
JJ]
gi|302491621|gb|EFL51504.1| RNA methyltransferase, TrmA family [Desulfovibrio fructosovorans
JJ]
Length = 450
Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 81 ELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAE 130
EL L + LA+ GKGV +V G VV D LPG +VTR K +AE
Sbjct: 8 ELTLTVDRLAFGGKGVARV--DGLVVFVDGGLPGATVRAKVTRVKKGFAE 55
>gi|294056010|ref|YP_003549668.1| TrmA family RNA methyltransferase [Coraliomargarita akajimensis DSM
45221]
gi|293615343|gb|ADE55498.1| RNA methyltransferase, TrmA family [Coraliomargarita akajimensis
DSM 45221]
Length = 409
Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 80 QELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAEMEF 133
QELEL +SL G GVC+ + G+VV+ V+PGE+ RV R +Y++ +
Sbjct: 18 QELELTVDSLTNLGMGVCRDGN-GWVVMVPFVIPGERVRVRVYRNYSNYSDADL 70
>gi|420156335|ref|ZP_14663178.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. MSTE9]
gi|394757633|gb|EJF40650.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. MSTE9]
Length = 459
Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 7/90 (7%)
Query: 143 KESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSP 202
K +P D N G +A +++ ++C LQ +P L ++ R G S
Sbjct: 130 KAQIPIGQDKQGNLIAGFYA-NHSHRIVQCERCALQPKPFEQALDTFLEWARKS--GESA 186
Query: 203 YDVHSHSGFLKHLMLR----TGSFMICAPV 228
YD +H G L+HL LR TG M+C V
Sbjct: 187 YDETTHKGKLRHLYLRMAEGTGEVMVCVVV 216
>gi|218132418|ref|ZP_03461222.1| hypothetical protein BACPEC_00277 [[Bacteroides] pectinophilus ATCC
43243]
gi|217992756|gb|EEC58758.1| 23S rRNA (uracil-5-)-methyltransferase RumA [[Bacteroides]
pectinophilus ATCC 43243]
Length = 547
Score = 40.8 bits (94), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 62/142 (43%), Gaps = 23/142 (16%)
Query: 87 ESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAEMEFSFGPKRWFPKESL 146
E L K V K+ D V+ D G K VT G +ME++FG + F L
Sbjct: 92 EQLKMKASQVKKLLDD--VIRTDYEFEGIKASPDVT---GYRNKMEYTFGDE--FKDGPL 144
Query: 147 PKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVH 206
ALGLH ++ D CLL E + +L V ++ + GL +
Sbjct: 145 ----------ALGLHKRSSMYDIVTCDGCLLVDEDYDRILNCVHEHM--SRAGLPFFHKV 192
Query: 207 SHSGFLKHLMLR----TGSFMI 224
+H G+L+HL++R TG +I
Sbjct: 193 THKGYLRHLLVRKAVKTGDILI 214
>gi|384456213|ref|YP_005668809.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Candidatus Arthromitus
sp. SFB-mouse-Yit]
gi|417959913|ref|ZP_12602620.1| Putative RNA methyltransferase [Candidatus Arthromitus sp. SFB-1]
gi|417963958|ref|ZP_12605788.1| Putative RNA methyltransferase [Candidatus Arthromitus sp. SFB-3]
gi|418015751|ref|ZP_12655316.1| 23S rRNA (uracil-5-)-methyltransferase [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|418373095|ref|ZP_12965186.1| Putative RNA methyltransferase [Candidatus Arthromitus sp.
SFB-mouse-SU]
gi|345506086|gb|EGX28380.1| 23S rRNA (uracil-5-)-methyltransferase [Candidatus Arthromitus sp.
SFB-mouse-NYU]
gi|346984557|dbj|BAK80233.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Candidatus Arthromitus
sp. SFB-mouse-Yit]
gi|380331113|gb|EIA22214.1| Putative RNA methyltransferase [Candidatus Arthromitus sp. SFB-3]
gi|380332296|gb|EIA23147.1| Putative RNA methyltransferase [Candidatus Arthromitus sp. SFB-1]
gi|380341484|gb|EIA29958.1| Putative RNA methyltransferase [Candidatus Arthromitus sp.
SFB-mouse-SU]
Length = 446
Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 18/112 (16%)
Query: 112 LPGEKFIGRVTR-KKGSYA-EMEFSFGPK-RWFPKESLPKRGDHIENYALGLHAPGFFDK 168
+P E+F+G + K+ Y +MEFSFG + + P E LGLH G
Sbjct: 105 IPYEEFLGILKSPKEFEYRNKMEFSFGDEFKCGPLE-------------LGLHKKGNPFG 151
Query: 169 VLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
++ C L SE ++ + DY+R ++ Y + +H+G+L++L+LR G
Sbjct: 152 IVPTYNCKLISEDFRKIMNSTIDYFR--EIRAEVYKLKTHTGYLRNLILREG 201
>gi|298529142|ref|ZP_07016545.1| (Uracil-5)-methyltransferase [Desulfonatronospira thiodismutans
ASO3-1]
gi|298510578|gb|EFI34481.1| (Uracil-5)-methyltransferase [Desulfonatronospira thiodismutans
ASO3-1]
Length = 386
Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 80 QELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAE 130
QELEL E L ++G+ + ++ V+L V PGE+ + +VT+ G + +
Sbjct: 2 QELELTVERLIWRGRALARLESGQVVILEPGVFPGERILAQVTKSTGDHLQ 52
>gi|359727293|ref|ZP_09265989.1| RNA methyltransferase [Leptospira weilii str. 2006001855]
Length = 419
Score = 40.8 bits (94), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 157 ALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRD-PQLGLSPYDVHSHSGFLKHL 215
+G G F +++++ C +QSE +N L ++ + P L PY+ S SGFLK+L
Sbjct: 136 VIGQRKAGSFRHIVDLESCFIQSEESNAELKRFRNLISEFPDL---PYNRKSDSGFLKYL 192
Query: 216 MLRTG 220
LR
Sbjct: 193 TLRKA 197
>gi|266619611|ref|ZP_06112546.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium hathewayi
DSM 13479]
gi|288868833|gb|EFD01132.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium hathewayi
DSM 13479]
Length = 458
Score = 40.8 bits (94), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
Query: 137 PKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDP 196
P R+ K P D G A G ++ + CLL E +L ++++
Sbjct: 127 PWRYRNKAQFPWGTDKDGKIITGFFA-GRTHAIIENEDCLLGIEENREILKIIKNHLE-- 183
Query: 197 QLGLSPYDVHSHSGFLKHLMLR----TGSFMICAPV 228
+ + PYD SHSG ++H ++R TG M+C +
Sbjct: 184 RYHIRPYDEASHSGLIRHTLIRKGFHTGELMVCQVI 219
>gi|295092515|emb|CBK78622.1| 23S rRNA m(5)U-1939 methyltransferase [Clostridium cf.
saccharolyticum K10]
Length = 475
Score = 40.8 bits (94), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 10/119 (8%)
Query: 114 GEKFIGRVTRKKGSYAEMEFSFG---PKRWFPKESLPKRGDHIENYALGLHAPGFFDKVL 170
G++ + +K+G ME G P R+ K P D G +A G ++
Sbjct: 118 GQENLEGTEKKRGETVRMEPIIGMEEPWRYRNKAQFPFGRDKDGRIIAGFYA-GRTHCIV 176
Query: 171 NIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLML----RTGSFMIC 225
+ CLL E +L ++++ + ++ PY+ H G ++H+++ RTG M+C
Sbjct: 177 ENEDCLLGVEENREILDIIRNFMNEYKI--EPYNEELHRGLVRHVLIRKGFRTGELMVC 233
>gi|342732843|ref|YP_004771682.1| RNA (Uracil-5-)-methyltransferase [Candidatus Arthromitus sp.
SFB-mouse-Japan]
gi|342330298|dbj|BAK56940.1| RNA (Uracil-5-)-methyltransferase [Candidatus Arthromitus sp.
SFB-mouse-Japan]
Length = 446
Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 18/112 (16%)
Query: 112 LPGEKFIGRVTR-KKGSYA-EMEFSFGPK-RWFPKESLPKRGDHIENYALGLHAPGFFDK 168
+P E+F+G + K+ Y +MEFSFG + + P E LGLH G
Sbjct: 105 IPYEEFLGILKSPKEFEYRNKMEFSFGDEFKCGPLE-------------LGLHKKGNPFG 151
Query: 169 VLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
++ C L SE ++ + DY+R ++ Y + +H+G+L++L+LR G
Sbjct: 152 IVPTYNCKLISEDFRKIMNSTIDYFR--EIRAEVYKLKTHTGYLRNLILREG 201
>gi|212638138|ref|YP_002314658.1| methyltransferase [Anoxybacillus flavithermus WK1]
gi|212559618|gb|ACJ32673.1| Methyltransferase [Anoxybacillus flavithermus WK1]
Length = 456
Score = 40.4 bits (93), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 164 GFFDK----VLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRT 219
GF+ + ++++D CL+Q E ++V+ V+ Q + Y+ +H G L+H+M R
Sbjct: 147 GFYKERSHDIIDMDTCLIQQEMNDIVVQTVKQICE--QYNIPAYNEQTHKGLLRHIMARY 204
Query: 220 GS 221
G+
Sbjct: 205 GA 206
>gi|291547098|emb|CBL20206.1| 23S rRNA m(5)U-1939 methyltransferase [Ruminococcus sp. SR1/5]
Length = 484
Score = 40.4 bits (93), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 44/95 (46%), Gaps = 14/95 (14%)
Query: 126 GSYAEMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLV 185
G +MEFSFG + K G +LGLH G +LN D C L +
Sbjct: 102 GYRNKMEFSFGDEY--------KDG----PLSLGLHKKGSTYDILNTDDCKLVHPDMTKI 149
Query: 186 LAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
L V++++ + S Y H G+L+HL+LR G
Sbjct: 150 LVCVREFFLERN--ASFYKKLQHVGYLRHLLLRRG 182
>gi|229829394|ref|ZP_04455463.1| hypothetical protein GCWU000342_01484 [Shuttleworthia satelles DSM
14600]
gi|229791825|gb|EEP27939.1| hypothetical protein GCWU000342_01484 [Shuttleworthia satelles DSM
14600]
Length = 468
Score = 40.4 bits (93), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 168 KVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFM 223
+++ ID CLL + +L AV+DY R + + PY+ + G ++H+++R +G M
Sbjct: 160 RIIPIDDCLLGAPENESILKAVKDYMRACR--IRPYNEVTGRGLVRHVLIRKGFASGQIM 217
Query: 224 IC 225
+C
Sbjct: 218 VC 219
>gi|354610050|ref|ZP_09028006.1| deoxyribonuclease/rho motif-related TRAM [Halobacterium sp. DL1]
gi|353194870|gb|EHB60372.1| deoxyribonuclease/rho motif-related TRAM [Halobacterium sp. DL1]
Length = 154
Score = 40.4 bits (93), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 32/57 (56%)
Query: 77 IRGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAEMEF 133
+ G+E+ + + + G GV + AD+GF+V+ D VLP + ++ K +YA +
Sbjct: 50 VHGEEVVVTVDDMHESGAGVGRQADSGFIVMVDGVLPPARVRAEISEVKSNYARADL 106
>gi|300853527|ref|YP_003778511.1| rRNA (uracil-5-)-methyltransferase [Clostridium ljungdahlii DSM
13528]
gi|300433642|gb|ADK13409.1| rRNA (uracil-5-)-methyltransferase [Clostridium ljungdahlii DSM
13528]
Length = 476
Score = 40.4 bits (93), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 137 PKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDP 196
P R+ K LP G + +G +A + +++++ CL+Q E ++ ++ ++D+
Sbjct: 146 PYRYRNKVQLP-VGKCNQKINIGFYAKASHE-IIDMESCLIQDETSDKIVKFMRDWIE-- 201
Query: 197 QLGLSPYDVHSHSGFLKHLMLRTG 220
+ + PYD + G +KH+M R G
Sbjct: 202 KYNIEPYDEKTGRGTIKHIMTRKG 225
>gi|363900181|ref|ZP_09326687.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Oribacterium sp. ACB1]
gi|395209796|ref|ZP_10398824.1| 23S rRNA (uracil-5-)-methyltransferase RumA-like protein
[Oribacterium sp. ACB8]
gi|361957035|gb|EHL10347.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Oribacterium sp. ACB1]
gi|394704781|gb|EJF12313.1| 23S rRNA (uracil-5-)-methyltransferase RumA-like protein
[Oribacterium sp. ACB8]
Length = 600
Score = 40.4 bits (93), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 10/70 (14%)
Query: 164 GFFD----KVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR- 218
GF+ +++ + CL+ SE L+L ++++ R+ Q +S Y+ + G L+H+ LR
Sbjct: 224 GFYGFHSHRIIETEDCLINSEENPLILNCIKEWAREYQ--ISGYEEETGKGLLRHIFLRK 281
Query: 219 ---TGSFMIC 225
TG ++C
Sbjct: 282 GFSTGEILLC 291
>gi|398336400|ref|ZP_10521105.1| RNA methyltransferase [Leptospira kmetyi serovar Malaysia str.
Bejo-Iso9]
Length = 465
Score = 40.4 bits (93), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 13/113 (11%)
Query: 115 EKFIGRVTRKKGSYAEMEFSFGPKRWFPKESLPKRGDHIENYA------LGLHAPGFFDK 168
E+FI + T+ SY +F P +++L R ++A +G G F
Sbjct: 94 EQFIYKTTQLSESYKN-DFGIEPVLISARKTLHYRNRM--DFAVFPGPIIGQRESGSFRH 150
Query: 169 VLNIDKCLLQSEPANLVLAAVQDYWRD-PQLGLSPYDVHSHSGFLKHLMLRTG 220
+++++ C +QSE +N L ++ P L PYD S SGFLK++ LR
Sbjct: 151 IVDLETCFIQSEESNEELKRFRNLLSQFPDL---PYDRRSDSGFLKYVTLRKA 200
>gi|325847814|ref|ZP_08170036.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerococcus
hydrogenalis ACS-025-V-Sch4]
gi|325480832|gb|EGC83885.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerococcus
hydrogenalis ACS-025-V-Sch4]
Length = 548
Score = 40.4 bits (93), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 53/112 (47%), Gaps = 18/112 (16%)
Query: 118 IGRVTRKKGSYAEMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLL 177
I R + KG +ME++FG K G + LGLH F ++++ + C +
Sbjct: 116 IVRSPKIKGYRNKMEYTFGDSY--------KDGPLV----LGLHRQNRFYEIVDTEGCNI 163
Query: 178 QSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMIC 225
E + VQ+Y+R+ S Y +H+G L++L++R TG M+
Sbjct: 164 VDEDFESIRKHVQNYFREK--NTSFYHKKAHTGLLRNLIIRKAMHTGEIMVI 213
>gi|163788804|ref|ZP_02183249.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Flavobacteriales
bacterium ALC-1]
gi|159876041|gb|EDP70100.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Flavobacteriales
bacterium ALC-1]
Length = 484
Score = 40.4 bits (93), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 78 RGQELELVCESLAYKGKGVCKVADT--GFVVLCDRVLPGEKFIGRVTRKKGSYAE 130
RGQ +EL+ E AY GKG+ ++ + FVV LPG+ +V + YAE
Sbjct: 12 RGQVIELLIEDYAYGGKGIGRIRNEHGEFVVFVPNTLPGQLVKAQVKKSSKKYAE 66
>gi|227499478|ref|ZP_03929589.1| TrmA family RNA methyltransferase [Anaerococcus tetradius ATCC
35098]
gi|227218540|gb|EEI83783.1| TrmA family RNA methyltransferase [Anaerococcus tetradius ATCC
35098]
Length = 461
Score = 40.4 bits (93), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 52/112 (46%), Gaps = 14/112 (12%)
Query: 109 DRVLPGEKFIGRVTRKKGSYAEMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDK 168
D GE I + K +ME+SFG ++ K G+ + LGLH F +
Sbjct: 114 DIAYDGEIKINQSPISKAYRNKMEYSFGDRQ--------KGGELV----LGLHRKNRFYE 161
Query: 169 VLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
++ + C + E N + + V++Y+R + S Y + G L+HL++R
Sbjct: 162 IVGTNDCNIIDEDFNTIRSRVEEYFR--RKNASFYHKSTRDGLLRHLVVRKA 211
>gi|417782035|ref|ZP_12429768.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Leptospira
weilii str. 2006001853]
gi|410777628|gb|EKR62273.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Leptospira
weilii str. 2006001853]
Length = 454
Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 157 ALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRD-PQLGLSPYDVHSHSGFLKHL 215
+G G F +++++ C +QSE +N L ++ + P L PY+ S SGFLK+L
Sbjct: 136 VIGQRKAGSFRHIVDLESCFIQSEESNAELKRFRNLISEFPDL---PYNRKSDSGFLKYL 192
Query: 216 MLRTG 220
LR
Sbjct: 193 TLRKA 197
>gi|260584770|ref|ZP_05852515.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Granulicatella elegans
ATCC 700633]
gi|260157427|gb|EEW92498.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Granulicatella elegans
ATCC 700633]
Length = 455
Score = 40.4 bits (93), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 79/203 (38%), Gaps = 64/203 (31%)
Query: 78 RGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTR--KKGSYAEME--F 133
+ +E+ + L Y+G GV KV GF + + LPGEK + V + KK YA++
Sbjct: 7 KNDRIEVQIDDLTYEGMGVAKV--DGFPLFIENALPGEKVVAHVLKIGKKFGYAKVVEWV 64
Query: 134 SFGPKRW------------FPKESLP---------KRGDHIENY-----------ALGLH 161
S P R P + + K+ H+ N +G+
Sbjct: 65 STSPDRIPLVDPNGTRVGTMPLQHMKYEAQLAFKQKQVKHVMNTIAKMPELEVRPTIGME 124
Query: 162 AP--------------------GFFDK----VLNIDKCLLQSEPANLVLAAVQDYWRDPQ 197
P GFF K +++++ +Q + ++ V+D R +
Sbjct: 125 HPFGYRNKAQIPVRMVNGLLTTGFFKKNSHDLVSMEDFHIQDPEIDRIILVVRDILR--K 182
Query: 198 LGLSPYDVHSHSGFLKHLMLRTG 220
+ YD H+G L+H+++R G
Sbjct: 183 YAIEAYDEEKHTGDLRHIIVRRG 205
>gi|331083695|ref|ZP_08332806.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
bacterium 6_1_63FAA]
gi|330403906|gb|EGG83458.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
bacterium 6_1_63FAA]
Length = 458
Score = 40.4 bits (93), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Query: 137 PKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDP 196
P R+ K P D N G +A G ++ C L E +L AV DY R+
Sbjct: 124 PWRYRNKAQFPVGKDKEGNLITGFYA-GRTHSIIPNTNCYLGVEVNEEILNAVLDYMREN 182
Query: 197 QLGLSPYDVHSHSGFLKHLMLRTG----SFMICAPV 228
+ PYD + G ++H+++R G M+C +
Sbjct: 183 HV--EPYDEVTGKGLVRHILIRYGFKTKEIMVCIII 216
>gi|403385957|ref|ZP_10928014.1| RNA methyltransferase [Kurthia sp. JC30]
Length = 453
Score = 40.4 bits (93), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 34/51 (66%), Gaps = 4/51 (7%)
Query: 169 VLNIDKCLLQSEPANLVLAAVQ-DYWRDPQLGLSPYDVHSHSGFLKHLMLR 218
+++ ++CL+Q++ A+ +LA ++ W LGL PYD + G L+H+++R
Sbjct: 155 IVDTERCLIQTDEADAILAGLKPKLW---ALGLQPYDEQTKQGQLRHVVVR 202
>gi|331004223|ref|ZP_08327702.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae oral
taxon 107 str. F0167]
gi|330411496|gb|EGG90907.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae oral
taxon 107 str. F0167]
Length = 490
Score = 40.4 bits (93), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 47/93 (50%), Gaps = 14/93 (15%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSFG +R K G+ ALG+H G ++N+ C + +L
Sbjct: 143 KMEFSFGDER--------KDGE----LALGMHKKGSHYDIVNVFGCKIVDSDFTKILELT 190
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGSF 222
+++ ++ S + ++H+GFL+HL++R +
Sbjct: 191 LNFFSKRKV--SYFHKNTHTGFLRHLLIRRSEY 221
>gi|220905833|ref|YP_002481144.1| TrmA family RNA methyltransferase [Cyanothece sp. PCC 7425]
gi|219862444|gb|ACL42783.1| RNA methyltransferase, TrmA family [Cyanothece sp. PCC 7425]
Length = 457
Score = 40.4 bits (93), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 168 KVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
+++N+++C +Q + N +LA V+ + Q G YD H+H G L+HL LR G
Sbjct: 159 RLVNLNQCPVQDDRLNPLLADVKQDLQ--QRGWPIYDEHTHRGLLRHLSLRVG 209
>gi|260587415|ref|ZP_05853328.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Blautia hansenii DSM
20583]
gi|260542282|gb|EEX22851.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Blautia hansenii DSM
20583]
Length = 475
Score = 40.4 bits (93), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Query: 137 PKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDP 196
P R+ K P D N G +A G ++ C L E +L AV DY R+
Sbjct: 141 PWRYRNKAQFPVGKDKEGNLITGFYA-GRTHSIIPNTNCYLGVEVNEEILNAVLDYMREN 199
Query: 197 QLGLSPYDVHSHSGFLKHLMLRTG----SFMICAPV 228
+ PYD + G ++H+++R G M+C +
Sbjct: 200 HV--EPYDEVTGKGLVRHILIRYGFKTKEIMVCIII 233
>gi|419719241|ref|ZP_14246527.1| methyltransferase domain protein [Lachnoanaerobaculum saburreum
F0468]
gi|383304567|gb|EIC95966.1| methyltransferase domain protein [Lachnoanaerobaculum saburreum
F0468]
Length = 475
Score = 40.0 bits (92), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 52/99 (52%), Gaps = 18/99 (18%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSFG ++ K G+ ALG+H G ++N+ C + + +L
Sbjct: 128 KMEFSFGDEK--------KDGE----LALGMHKKGSHYDIVNVFGCKIVNSDFTKLLELT 175
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMI 224
+++++ + + + ++H+GFL+HL++R TG +I
Sbjct: 176 LNFFKERNI--AYFHKNTHTGFLRHLLVRRSEYTGEILI 212
>gi|440293794|gb|ELP86853.1| RNA m5u methyltransferase, putative [Entamoeba invadens IP1]
Length = 543
Score = 40.0 bits (92), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 18/102 (17%)
Query: 126 GSYAEMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLV 185
G M+F+FG + +G +E GLH G ++ + +D C + E +
Sbjct: 213 GYRNRMDFTFGDRM---------KGGELE---CGLHKMGHYNSTITVDDCRIVDEDFITI 260
Query: 186 LAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFM 223
L DY+R +L + Y H G L++L++R TG M
Sbjct: 261 LKFNVDYFR--RLHVDFYHKKEHKGVLRNLIVRKAMKTGEIM 300
>gi|242398439|ref|YP_002993863.1| 23S rRNA (Uracil-5-)-methyltransferase [Thermococcus sibiricus MM
739]
gi|242264832|gb|ACS89514.1| 23S rRNA (Uracil-5-)-methyltransferase [Thermococcus sibiricus MM
739]
Length = 419
Score = 40.0 bits (92), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 157 ALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLM 216
+G G + V+++ C + + + L +V+D D L L P+D+ +GFL++++
Sbjct: 123 GIGFRRRGTWWDVIDVKNCRIFGDKSEKALRSVKDLIED--LNLVPWDLKKSNGFLRYVV 180
Query: 217 LRTGSF 222
LR G F
Sbjct: 181 LREGKF 186
>gi|218134835|ref|ZP_03463639.1| hypothetical protein BACPEC_02738 [[Bacteroides] pectinophilus ATCC
43243]
gi|217990220|gb|EEC56231.1| 23S rRNA (uracil-5-)-methyltransferase RumA [[Bacteroides]
pectinophilus ATCC 43243]
Length = 489
Score = 40.0 bits (92), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 137 PKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANL-VLAAVQDYWRD 195
P + K P D N +G +A D + +D C+ +P N +L V+ + D
Sbjct: 137 PYHYRNKAQFPVGCDRDGNIKIGFYAGRTHDIIDYMDCCI--GDPVNKDILRIVRQWMTD 194
Query: 196 PQLGLSPYDVHSHSGFLKHLMLRTG 220
+ PY+ +HSG ++H+++RTG
Sbjct: 195 NNI--KPYNEENHSGVVRHILIRTG 217
>gi|358066797|ref|ZP_09153287.1| hypothetical protein HMPREF9333_00166 [Johnsonella ignava ATCC
51276]
gi|356695068|gb|EHI56719.1| hypothetical protein HMPREF9333_00166 [Johnsonella ignava ATCC
51276]
Length = 478
Score = 40.0 bits (92), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 16/95 (16%)
Query: 125 KGSYAEMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANL 184
KG +MEFSFG + + SL ALG+H ++N D C + N
Sbjct: 125 KGYRNKMEFSFGDE--YKGGSL----------ALGMHKRASHYDIVNCDYCNIVHSDFNK 172
Query: 185 VLAAVQDYWRDPQLGLSPY-DVHSHSGFLKHLMLR 218
+L+ +D+++ +PY ++ +GFL+HL+LR
Sbjct: 173 ILSFTRDFFKSEN---TPYFHKNTRNGFLRHLILR 204
>gi|421099341|ref|ZP_15559996.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Leptospira
borgpetersenii str. 200901122]
gi|410797605|gb|EKR99709.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Leptospira
borgpetersenii str. 200901122]
Length = 439
Score = 40.0 bits (92), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 157 ALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRD-PQLGLSPYDVHSHSGFLKHL 215
+G G F +++++ C +QSE +N L +D + P L PY+ S SGFLK+
Sbjct: 120 VIGQREAGSFRHIVDLEYCFIQSEESNAELKRFRDLISEFPDL---PYNRKSDSGFLKYF 176
Query: 216 MLRTG 220
LR
Sbjct: 177 TLRKA 181
>gi|225026465|ref|ZP_03715657.1| hypothetical protein EUBHAL_00714 [Eubacterium hallii DSM 3353]
gi|224956204|gb|EEG37413.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Eubacterium hallii DSM
3353]
Length = 382
Score = 40.0 bits (92), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 168 KVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
+V+ +D CL++++ A+ ++ V + + PY+ + GFL+H+++RTG
Sbjct: 81 RVIRVDSCLIENQKADEIMNTVTSLMK--SFKMRPYNEDTGYGFLRHILVRTG 131
>gi|417968586|ref|ZP_12609590.1| hypothetical protein SFB6_067G12, partial [Candidatus Arthromitus
sp. SFB-co]
gi|380339381|gb|EIA28129.1| hypothetical protein SFB6_067G12, partial [Candidatus Arthromitus
sp. SFB-co]
Length = 268
Score = 40.0 bits (92), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 18/112 (16%)
Query: 112 LPGEKFIGRVTR-KKGSYA-EMEFSFGPK-RWFPKESLPKRGDHIENYALGLHAPGFFDK 168
+P E+F+G + K+ Y +MEFSFG + + P E LGLH G
Sbjct: 105 IPYEEFLGILKSPKEFEYRNKMEFSFGDEFKCGPLE-------------LGLHKKGNPFG 151
Query: 169 VLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
++ C L SE ++ + DY+R ++ Y + +H+G+L++L+LR G
Sbjct: 152 IVPTYNCKLISEDFRKIMNSTIDYFR--EIRAEVYKLKTHTGYLRNLILREG 201
>gi|121533508|ref|ZP_01665336.1| RNA methyltransferase, TrmA family [Thermosinus carboxydivorans
Nor1]
gi|121308067|gb|EAX48981.1| RNA methyltransferase, TrmA family [Thermosinus carboxydivorans
Nor1]
Length = 462
Score = 40.0 bits (92), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 38/64 (59%), Gaps = 3/64 (4%)
Query: 158 LGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLML 217
+G +A G D +++ + C +Q + N++ A ++D +LG++ YD + G ++H++
Sbjct: 151 VGCYAQGTHD-IVDTEHCYIQHQANNIIAAVMRDVVN--KLGIATYDERTGKGVIRHILG 207
Query: 218 RTGS 221
R G+
Sbjct: 208 RVGT 211
>gi|365839063|ref|ZP_09380312.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaeroglobus geminatus
F0357]
gi|364565631|gb|EHM43348.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaeroglobus geminatus
F0357]
Length = 497
Score = 40.0 bits (92), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 16/97 (16%)
Query: 137 PKRWFPKESLPKRGD----HIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDY 192
P + K LP G+ HI +A H ++++ID C +Q + N ++ V+ +
Sbjct: 130 PWNYRNKMQLPVGGEKKTVHIGCFAEKSH------RIIDIDACPIQKDGNNQIIPVVRQW 183
Query: 193 WRDPQLGLSPYDVHSHSGFLKHLMLRT----GSFMIC 225
+D ++ YD +G ++H+M RT G M+C
Sbjct: 184 MKDYKI--PAYDEDRRTGIVRHIMGRTGVHSGEIMVC 218
>gi|332983359|ref|YP_004464800.1| 23S rRNA m(5)U-1939 methyltransferase [Mahella australiensis 50-1
BON]
gi|332701037|gb|AEE97978.1| 23S rRNA m(5)U-1939 methyltransferase [Mahella australiensis 50-1
BON]
Length = 456
Score = 40.0 bits (92), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 157 ALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLM 216
+G A G D +++ID C +Q + + AV+DY ++ YD + G L+H+M
Sbjct: 145 VMGFFAAGTHD-IVDIDTCPIQHPAVDAAIKAVKDYV--SSYNVAVYDEMTGKGLLRHIM 201
Query: 217 LRTG 220
+R G
Sbjct: 202 VRVG 205
>gi|210623379|ref|ZP_03293776.1| hypothetical protein CLOHIR_01726 [Clostridium hiranonis DSM 13275]
gi|210153640|gb|EEA84646.1| hypothetical protein CLOHIR_01726 [Clostridium hiranonis DSM 13275]
Length = 458
Score = 40.0 bits (92), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 150 GDHIEN--YALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHS 207
GD ++ LGLH G + +D C+L N +L +++D + L Y V +
Sbjct: 133 GDEVKGGPLTLGLHKKGRHIDIQTVDGCMLVDSDFNTILKESLAFFQDAE--LPYYRVVN 190
Query: 208 HSGFLKHLMLRTG 220
H G+L++L++R G
Sbjct: 191 HEGYLRNLVVRKG 203
>gi|417965791|ref|ZP_12607271.1| Putative RNA methyltransferase, TrmA family, partial [Candidatus
Arthromitus sp. SFB-4]
gi|380335794|gb|EIA25903.1| Putative RNA methyltransferase, TrmA family, partial [Candidatus
Arthromitus sp. SFB-4]
Length = 270
Score = 40.0 bits (92), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 57/112 (50%), Gaps = 18/112 (16%)
Query: 112 LPGEKFIGRVTR-KKGSYA-EMEFSFGPK-RWFPKESLPKRGDHIENYALGLHAPGFFDK 168
+P E+F+G + K+ Y +MEFSFG + + P E LGLH G
Sbjct: 105 IPYEEFLGILKSPKEFEYRNKMEFSFGDEFKCGPLE-------------LGLHKKGNPFG 151
Query: 169 VLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
++ C L SE ++ + DY+R ++ Y + +H+G+L++L+LR G
Sbjct: 152 IVPTYNCKLISEDFRKIMNSTIDYFR--EIRAEVYKLKTHTGYLRNLILREG 201
>gi|167766442|ref|ZP_02438495.1| hypothetical protein CLOSS21_00948 [Clostridium sp. SS2/1]
gi|167711851|gb|EDS22430.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. SS2/1]
gi|291560880|emb|CBL39680.1| 23S rRNA m(5)U-1939 methyltransferase [butyrate-producing bacterium
SSC/2]
Length = 543
Score = 40.0 bits (92), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 18/95 (18%)
Query: 126 GSYAEMEFSFGPKRWFPKESLPKRGDHIEN--YALGLHAPGFFDKVLNIDKCLLQSEPAN 183
G +MEFSFG D +++ ALG+H F ++NI C + N
Sbjct: 123 GYRNKMEFSFG--------------DEVKDGPLALGMHKKNTFHDIVNITDCQIVDNDYN 168
Query: 184 LVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR 218
L++ + + Q+ L Y H G+ +HL++R
Sbjct: 169 LIVKCALNIAQ--QMELPFYHKMRHEGYFRHLVVR 201
>gi|417002099|ref|ZP_11941488.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerococcus
prevotii ACS-065-V-Col13]
gi|325479240|gb|EGC82336.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerococcus
prevotii ACS-065-V-Col13]
Length = 455
Score = 39.7 bits (91), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 46/89 (51%), Gaps = 14/89 (15%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+ME++FG + K G+ + LGLH F ++++ C + N++ + V
Sbjct: 129 KMEYTFGDR--------EKGGELV----LGLHRQNRFYEIVSTKDCNIVDNDFNIIRSNV 176
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR 218
++Y+RD + Y ++ G L+HL++R
Sbjct: 177 EEYFRDKKTEF--YHKTTNEGLLRHLIVR 203
>gi|184201679|ref|YP_001855886.1| 23S rRNA methyluridine methyltransferase [Kocuria rhizophila
DC2201]
gi|183581909|dbj|BAG30380.1| putative 23S rRNA (uracil-5-)-methyltransferase RumB [Kocuria
rhizophila DC2201]
Length = 378
Score = 39.7 bits (91), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 51/112 (45%), Gaps = 10/112 (8%)
Query: 117 FIGRVTRKKGSYAEMEFSFGPKRWFPKESLPKRG-----DHIENYALGLHAPGFFDKVLN 171
+ ++ RK+ E+ + G RW + P++G + +G A G D
Sbjct: 21 YARQLARKQELVRELVDAHGAPRWLEPVASPEKGFRNKAKMVVAGRVGAPALGILDGAAG 80
Query: 172 ID--KCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+D C L EP L A+ D+ ++ L PYDV G +KH+++ TGS
Sbjct: 81 VDLRDCPLYPEPVTRALHALADFI--GRVRLLPYDVAKRRGEIKHVIV-TGS 129
>gi|227873615|ref|ZP_03991853.1| TrmA family RNA methyltransferase [Oribacterium sinus F0268]
gi|227840533|gb|EEJ50925.1| TrmA family RNA methyltransferase [Oribacterium sinus F0268]
Length = 422
Score = 39.7 bits (91), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 77/182 (42%), Gaps = 24/182 (13%)
Query: 47 ITKTQTRTRTHDAKPQFETFDSNNNDYFKPIRGQELELVCESLAYKGKGVCKVADTGFVV 106
+ K T ++ +A Q E + N D QE+ E +A K + + + D V+
Sbjct: 1 MEKENTNSKIEEAVQQQEKYWCQNQDRCGGCFYQEIPYE-EEVAKKEREIRDLFDP--VI 57
Query: 107 LCDRVLPGEKFIGRVTRKKGSYAEMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFF 166
+ + G I +K+ +MEFSFG + K G LGLH F
Sbjct: 58 QGNYLFEG---IISSPKKEAYRNKMEFSFGDQE--------KDGP----LCLGLHQKRSF 102
Query: 167 DKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSF 222
+LN + C L +L A + Y+++ L Y H G+L+HL++R TG
Sbjct: 103 FNILNTEDCRLPHPDMGEILLATRLYFQEK--SLRYYHKKRHEGYLRHLLIRRAEKTGEI 160
Query: 223 MI 224
++
Sbjct: 161 LL 162
>gi|23098223|ref|NP_691689.1| RNA methyltransferase [Oceanobacillus iheyensis HTE831]
gi|50401583|sp|Q8ES75.1|Y768_OCEIH RecName: Full=Uncharacterized RNA methyltransferase OB0768
gi|22776448|dbj|BAC12724.1| RNA methyltransferase [Oceanobacillus iheyensis HTE831]
Length = 459
Score = 39.7 bits (91), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Query: 164 GFFDK-----VLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR 218
GF+ K + N D C +Q E N VL + + G+ YD SH G L+H+M+R
Sbjct: 148 GFYQKRSHRILQNQDTCHIQDEAINEVLPFTRQLMN--KYGIQAYDEKSHRGQLRHIMVR 205
Query: 219 TGSF 222
G +
Sbjct: 206 VGHY 209
>gi|15893813|ref|NP_347162.1| SAM-dependent methyltransferase [Clostridium acetobutylicum ATCC
824]
gi|337735737|ref|YP_004635184.1| SAM-dependent methyltransferase [Clostridium acetobutylicum DSM
1731]
gi|50401652|sp|Q97LN4.1|Y523_CLOAB RecName: Full=Uncharacterized RNA methyltransferase CA_C0523
gi|15023386|gb|AAK78502.1|AE007567_4 SAM-dependent methyltransferase related to
tRNA(uracyl-5-)-methyltransferase (trmA family)
[Clostridium acetobutylicum ATCC 824]
gi|336290152|gb|AEI31286.1| SAM-dependent methyltransferase [Clostridium acetobutylicum DSM
1731]
Length = 460
Score = 39.7 bits (91), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 168 KVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFM 223
+++ +DKC +Q + AN ++ ++ + + + + Y+ +S G L+H+M+R TG M
Sbjct: 159 EIIEVDKCFIQDDSANEIILLIKRWIK--EFNIEGYNEYSGKGTLRHIMIRKAFKTGQIM 216
Query: 224 IC 225
+
Sbjct: 217 LV 218
>gi|330752034|emb|CBL80546.1| RNA methyltransferase [uncultured Flavobacteriia bacterium]
Length = 484
Score = 39.7 bits (91), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 78 RGQELELVCESLAYKGKGVCKV--ADTGFVVLCDRVLPGEKFIGRVTRKKGSYAE 130
RGQ LEL E A+ GKG+ ++ + F++ LPG+ +V++ YAE
Sbjct: 12 RGQILELKIEDYAFGGKGISRIRSKEGVFIIFVPNTLPGQTVKAQVSKSSKKYAE 66
>gi|384457248|ref|YP_005669668.1| SAM-dependent methyltransferase [Clostridium acetobutylicum EA
2018]
gi|325507937|gb|ADZ19573.1| SAM-dependent methyltransferase [Clostridium acetobutylicum EA
2018]
Length = 460
Score = 39.7 bits (91), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 168 KVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFM 223
+++ +DKC +Q + AN ++ ++ + + + + Y+ +S G L+H+M+R TG M
Sbjct: 159 EIIEVDKCFIQDDSANEIILLIKRWIK--EFNIEGYNEYSGKGTLRHIMIRKAFKTGQIM 216
Query: 224 IC 225
+
Sbjct: 217 LV 218
>gi|335429912|ref|ZP_08556808.1| TrmA family RNA methyltransferase [Haloplasma contractile SSD-17B]
gi|334888994|gb|EGM27288.1| TrmA family RNA methyltransferase [Haloplasma contractile SSD-17B]
Length = 459
Score = 39.7 bits (91), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 137 PKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDP 196
P R+ K +P G + P D ++N+++C +Q + A+ ++ ++
Sbjct: 128 PWRYRNKTQVPFGLTEAGEVVAGFYKPRSHD-IVNMERCDIQDDTADEIIDRIRQL--SA 184
Query: 197 QLGLSPYDVHSHSGFLKHLMLRTG 220
+ + PY+ H GFL+H+++R G
Sbjct: 185 EYDIEPYNEFKHKGFLRHVIVRKG 208
>gi|317498282|ref|ZP_07956581.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
bacterium 5_1_63FAA]
gi|316894491|gb|EFV16674.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
bacterium 5_1_63FAA]
Length = 454
Score = 39.7 bits (91), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 18/95 (18%)
Query: 126 GSYAEMEFSFGPKRWFPKESLPKRGDHIEN--YALGLHAPGFFDKVLNIDKCLLQSEPAN 183
G +MEFSFG D +++ ALG+H F ++NI C + N
Sbjct: 125 GYRNKMEFSFG--------------DEVKDGPLALGMHKKNTFHDIVNITDCQIVDNDYN 170
Query: 184 LVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR 218
L++ + + Q+ L Y H G+ +HL++R
Sbjct: 171 LIVKCALNIAQ--QMELPFYHKMRHEGYFRHLVVR 203
>gi|366086326|ref|ZP_09452811.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus zeae KCTC 3804]
Length = 456
Score = 39.7 bits (91), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 78 RGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYA 129
+ Q+LE+ + L Y+G GV KVA GF + + LPGEK V + + Y
Sbjct: 11 KNQDLEVTIQDLTYEGMGVAKVA--GFPLFIEDALPGEKMQVHVLKVQKQYG 60
>gi|182419838|ref|ZP_02951078.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium butyricum
5521]
gi|237666723|ref|ZP_04526708.1| 23S rRNA-methyltransferase [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|182376386|gb|EDT73968.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium butyricum
5521]
gi|237657922|gb|EEP55477.1| 23S rRNA-methyltransferase [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 451
Score = 39.7 bits (91), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 18/99 (18%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEF+FG + +G + +G+H G ++ +D+C+L E V+
Sbjct: 127 KMEFTFGDE---------AKGAPL---GVGMHMIGKSFGIVTVDQCMLIDEDYRKVIRLT 174
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMI 224
DY+R+ L Y + G+L+HL++R TG ++
Sbjct: 175 VDYFREQNLPY--YRIMKAEGYLRHLVIRKAKNTGELLV 211
>gi|315660149|ref|ZP_07913006.1| 23S rRNA (uracil-5-)-methyltransferase [Staphylococcus lugdunensis
M23590]
gi|315494830|gb|EFU83168.1| 23S rRNA (uracil-5-)-methyltransferase [Staphylococcus lugdunensis
M23590]
Length = 456
Score = 39.7 bits (91), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 136 GPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRD 195
P R+ K +P D + + +G + D ++++D CL+Q + ++ V+ +
Sbjct: 124 NPWRYRNKSQVPIGQDKMNHKIMGYYRQRSHD-IIDMDSCLIQDKQHQDIMNHVKKWIN- 181
Query: 196 PQLGLSPYDVHSHSGFLKHLMLRTGSF 222
+ +S Y+ + G L+HL++RTG +
Sbjct: 182 -EYHISIYNERTKKGVLRHLVIRTGHY 207
>gi|298715093|emb|CBJ27781.1| RNA methyltransferase, TrmA family [Ectocarpus siliculosus]
Length = 516
Score = 39.7 bits (91), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 31/51 (60%)
Query: 80 QELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAE 130
+EL + ESL G+G+ + +TG+VV+ V+PGE +V R +Y+E
Sbjct: 97 EELTVRIESLTNLGEGIAREGETGWVVMVPHVIPGELVKCKVFRNHANYSE 147
>gi|428297522|ref|YP_007135828.1| 23S rRNA m(5)U-1939 methyltransferase [Calothrix sp. PCC 6303]
gi|428234066|gb|AFY99855.1| 23S rRNA m(5)U-1939 methyltransferase [Calothrix sp. PCC 6303]
Length = 453
Score = 39.7 bits (91), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 8/67 (11%)
Query: 159 GLHAPGFFDK----VLNIDKCLLQSEPANLVLAAV-QDYWRDPQLGLSPYDVHSHSGFLK 213
G G++ K ++N+++C +Q E N++L V QD + PYD +H+G ++
Sbjct: 142 GKVVAGYYQKGSHQIVNLNQCPVQDERLNILLREVKQDIQKQR---WQPYDEKTHTGLIR 198
Query: 214 HLMLRTG 220
HL LR G
Sbjct: 199 HLGLRIG 205
>gi|425738441|ref|ZP_18856704.1| RNA methyltransferase [Staphylococcus massiliensis S46]
gi|425479673|gb|EKU46846.1| RNA methyltransferase [Staphylococcus massiliensis S46]
Length = 455
Score = 39.7 bits (91), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 22/104 (21%), Positives = 54/104 (51%), Gaps = 8/104 (7%)
Query: 124 KKGSYAEMEFS--FG---PKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQ 178
+KGS+ +++ + G P + K +P D + +G + D ++++D CL+Q
Sbjct: 107 RKGSFKDLKINQPIGMEHPWHYRNKSQIPVGTDQSGDVKMGFYRQRSHD-IIDMDTCLIQ 165
Query: 179 SEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGSF 222
+ N ++ +++ + +L +S Y+ SG ++H+++R +
Sbjct: 166 HDVQNALMVSIKKWLN--ELNVSIYNEQLKSGLVRHVIIRASHY 207
>gi|429763343|ref|ZP_19295695.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerostipes hadrus
DSM 3319]
gi|429178919|gb|EKY20184.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerostipes hadrus
DSM 3319]
Length = 455
Score = 39.7 bits (91), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 18/95 (18%)
Query: 126 GSYAEMEFSFGPKRWFPKESLPKRGDHIEN--YALGLHAPGFFDKVLNIDKCLLQSEPAN 183
G +MEFSFG D +++ ALG+H F ++NI C + N
Sbjct: 125 GYRNKMEFSFG--------------DEVKDGPLALGMHKKNTFHDIVNITDCQIVDNDYN 170
Query: 184 LVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR 218
L++ + + Q+ L Y H G+ +HL++R
Sbjct: 171 LIVKCALNIAQ--QMELPFYHKMRHEGYFRHLVVR 203
>gi|404330698|ref|ZP_10971146.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Sporolactobacillus
vineae DSM 21990 = SL153]
Length = 457
Score = 39.7 bits (91), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 159 GLHAPGFFDK----VLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKH 214
G A GFF K ++N+D C++ + ++ + D G+ PY+ +SG L+H
Sbjct: 143 GRFAFGFFKKRSHEIVNLDSCIITDPLIDKIVQTARHAAEDK--GIEPYNEAKNSGVLRH 200
Query: 215 LMLRTG 220
+M R+G
Sbjct: 201 IMARSG 206
>gi|418636768|ref|ZP_13199107.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
lugdunensis VCU139]
gi|374840464|gb|EHS03957.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
lugdunensis VCU139]
Length = 461
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 136 GPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRD 195
P R+ K +P D + + +G + D ++++D CL+Q + ++ V+ +
Sbjct: 129 NPWRYRNKSQVPIGQDKMNHKIMGYYRQRSHD-IIDMDSCLIQDKQHQDIMNHVKKWIN- 186
Query: 196 PQLGLSPYDVHSHSGFLKHLMLRTGSF 222
+ +S Y+ + G L+HL++RTG +
Sbjct: 187 -EYHISIYNERTKKGVLRHLVIRTGHY 212
>gi|314936049|ref|ZP_07843398.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus hominis
subsp. hominis C80]
gi|313655866|gb|EFS19609.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus hominis
subsp. hominis C80]
Length = 454
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 137 PKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDP 196
P R+ K LP D +G + D ++++D CL+Q E ++ ++ + +
Sbjct: 124 PWRYRNKSQLPVGKDKNNKTIMGYYRQRSHD-IIDMDSCLIQDEKQQELMNDIKQWLNE- 181
Query: 197 QLGLSPYDVHSHSGFLKHLMLRTGSF 222
L +S Y+ + G L+H+++RT +
Sbjct: 182 -LNVSIYNEKNKKGLLRHVVIRTSHY 206
>gi|228476330|ref|ZP_04061031.1| 23S rRNA-methyltransferase RumA [Staphylococcus hominis SK119]
gi|228269613|gb|EEK11119.1| 23S rRNA-methyltransferase RumA [Staphylococcus hominis SK119]
Length = 454
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 137 PKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDP 196
P R+ K LP D +G + D ++++D CL+Q E ++ ++ + +
Sbjct: 124 PWRYRNKSQLPVGKDKNNKTIMGYYRQRSHD-IIDMDSCLIQDEKQQELMNDIKQWLNE- 181
Query: 197 QLGLSPYDVHSHSGFLKHLMLRTGSF 222
L +S Y+ + G L+H+++RT +
Sbjct: 182 -LNVSIYNEKNKKGLLRHVVIRTSHY 206
>gi|289550385|ref|YP_003471289.1| RNA methyltransferase, TrmA family [Staphylococcus lugdunensis
HKU09-01]
gi|385784015|ref|YP_005760188.1| putative RNA methyltransferase [Staphylococcus lugdunensis N920143]
gi|418413691|ref|ZP_12986907.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
lugdunensis ACS-027-V-Sch2]
gi|289179917|gb|ADC87162.1| RNA methyltransferase, TrmA family [Staphylococcus lugdunensis
HKU09-01]
gi|339894271|emb|CCB53540.1| putative RNA methyltransferase [Staphylococcus lugdunensis N920143]
gi|410877329|gb|EKS25221.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus
lugdunensis ACS-027-V-Sch2]
Length = 461
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 136 GPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRD 195
P R+ K +P D + + +G + D ++++D CL+Q + ++ V+ +
Sbjct: 129 NPWRYRNKSQVPIGQDKMNHKIMGYYRQRSHD-IIDMDSCLIQDKQHQDIMNHVKKWIN- 186
Query: 196 PQLGLSPYDVHSHSGFLKHLMLRTGSF 222
+ +S Y+ + G L+HL++RTG +
Sbjct: 187 -EYHISIYNERTKKGVLRHLVIRTGHY 212
>gi|254423658|ref|ZP_05037376.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus sp. PCC
7335]
gi|196191147|gb|EDX86111.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus sp. PCC
7335]
Length = 483
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 8/92 (8%)
Query: 129 AEMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAA 188
AE + + K +P P + Y G H +++N+++C +Q E + +LAA
Sbjct: 154 AEEQLGYRNKATYPLGLSPTKDVKAGYYQKGSH------RLVNLNQCPVQDERLDPLLAA 207
Query: 189 VQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
V+ + + + YD SH G +KHL LR G
Sbjct: 208 VKKDIQAREWKI--YDERSHKGHIKHLALRIG 237
>gi|418618812|ref|ZP_13181667.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus hominis
VCU122]
gi|374826691|gb|EHR90578.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Staphylococcus hominis
VCU122]
Length = 454
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 137 PKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDP 196
P R+ K LP D +G + D ++++D CL+Q E ++ ++ + +
Sbjct: 124 PWRYRNKSQLPVGKDKNNKTIMGYYRQRSHD-IIDMDSCLIQDEKQQELMNDIKQWLNE- 181
Query: 197 QLGLSPYDVHSHSGFLKHLMLRTGSF 222
L +S Y+ + G L+H+++RT +
Sbjct: 182 -LNVSIYNEKNKKGLLRHVVIRTSHY 206
>gi|297583617|ref|YP_003699397.1| TrmA family RNA methyltransferase [Bacillus selenitireducens MLS10]
gi|297142074|gb|ADH98831.1| RNA methyltransferase, TrmA family [Bacillus selenitireducens
MLS10]
Length = 464
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 158 LGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLML 217
+GLH G F ++ ++ CL+ V ++ + + L YD +H+G L+HLM+
Sbjct: 151 MGLHEQGNFRGIIPLETCLIAGNEMVDAAMIVSNWAK--EFELPGYDKDAHTGLLRHLMV 208
Query: 218 R----TGSFMI 224
R TG M+
Sbjct: 209 RQSFNTGEIML 219
>gi|419534498|ref|ZP_14074001.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA17457]
gi|379565232|gb|EHZ30225.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA17457]
Length = 501
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 73/156 (46%), Gaps = 25/156 (16%)
Query: 76 PIRGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAEMEF-- 133
P R Q+L+L AY G+ AD G + +++ K + K A++E
Sbjct: 23 PHRNQDLDL-----AYLRSGI---ADLGHLSYPEQLKFKTKQVKDSLYKIAGIADVEVAE 74
Query: 134 SFG---PKRWFPKESLPKRGDHIENYALGLHAPGFFDK----VLNIDKCLLQSEPANLVL 186
+ G P ++ K +P R + G+ GFF K ++ ++ +Q + V+
Sbjct: 75 TLGMEHPVKYRNKAQVPVRRVN------GVLETGFFRKNSHNLMPLEDFFIQDPVIDQVV 128
Query: 187 AAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGSF 222
A++D +R + L PYD HSG +++L++R G +
Sbjct: 129 VALRDLFR--RFDLKPYDEKEHSGLIRNLVVRRGHY 162
>gi|374308185|ref|YP_005054616.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Filifactor alocis ATCC
35896]
gi|291165734|gb|EFE27782.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Filifactor alocis ATCC
35896]
Length = 547
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 14/91 (15%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEF+FG ++ K G LG+H + ++ ++ C + E +L A
Sbjct: 127 KMEFTFGNEQ--------KDG----QLTLGMHMTNRSNSIVFVEDCRIVDEDYRQILKAT 174
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
Y+R L Y + G+L+HL+LR G
Sbjct: 175 VSYFRKHNLPF--YHIMRREGYLRHLVLRKG 203
>gi|410941447|ref|ZP_11373244.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Leptospira
noguchii str. 2006001870]
gi|410783396|gb|EKR72390.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Leptospira
noguchii str. 2006001870]
Length = 451
Score = 39.3 bits (90), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 4/64 (6%)
Query: 158 LGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRD-PQLGLSPYDVHSHSGFLKHLM 216
+G G F +++++ CL+QS+ +N L ++ + P L PYD S SGFLK++
Sbjct: 134 VGQREAGSFRHIVDLESCLIQSKESNEELYRFRNLISNFPNL---PYDRKSDSGFLKYIT 190
Query: 217 LRTG 220
LR
Sbjct: 191 LRKA 194
>gi|168494457|ref|ZP_02718600.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae CDC3059-06]
gi|417686524|ref|ZP_12335801.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA41301]
gi|418073814|ref|ZP_12711072.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA11184]
gi|418078519|ref|ZP_12715742.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 4027-06]
gi|418089422|ref|ZP_12726579.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA43265]
gi|418098397|ref|ZP_12735496.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 6901-05]
gi|418114525|ref|ZP_12751515.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 5787-06]
gi|418173401|ref|ZP_12810015.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA41277]
gi|418178064|ref|ZP_12814648.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA41565]
gi|418182767|ref|ZP_12819327.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA43380]
gi|418216478|ref|ZP_12843202.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae Netherlands15B-37]
gi|419433515|ref|ZP_13973633.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA40183]
gi|419440307|ref|ZP_13980358.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA40410]
gi|419464137|ref|ZP_14004030.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA04175]
gi|421249324|ref|ZP_15705785.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2082239]
gi|421281012|ref|ZP_15731810.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA04672]
gi|183575617|gb|EDT96145.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae CDC3059-06]
gi|332075376|gb|EGI85845.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA41301]
gi|353747710|gb|EHD28366.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 4027-06]
gi|353750661|gb|EHD31299.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA11184]
gi|353762108|gb|EHD42671.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA43265]
gi|353769757|gb|EHD50273.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 6901-05]
gi|353787267|gb|EHD67674.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 5787-06]
gi|353840100|gb|EHE20174.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA41277]
gi|353844838|gb|EHE24881.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA41565]
gi|353848908|gb|EHE28918.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA43380]
gi|353873529|gb|EHE53390.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae Netherlands15B-37]
gi|379539356|gb|EHZ04535.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA04175]
gi|379576516|gb|EHZ41440.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA40183]
gi|379579739|gb|EHZ44638.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA40410]
gi|395614436|gb|EJG74456.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2082239]
gi|395882173|gb|EJG93220.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA04672]
Length = 543
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 73/156 (46%), Gaps = 25/156 (16%)
Query: 76 PIRGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAEMEF-- 133
P R Q+L+L AY G+ AD G + +++ K + K A++E
Sbjct: 65 PHRNQDLDL-----AYLRSGI---ADLGHLSYPEQLKFKTKQVKDSLYKIAGIADVEVAE 116
Query: 134 SFG---PKRWFPKESLPKRGDHIENYALGLHAPGFFDK----VLNIDKCLLQSEPANLVL 186
+ G P ++ K +P R + G+ GFF K ++ ++ +Q + V+
Sbjct: 117 TLGMEHPVKYRNKAQVPVRRVN------GVLETGFFRKNSHNLMPLEDFFIQDPVIDQVV 170
Query: 187 AAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGSF 222
A++D +R + L PYD HSG +++L++R G +
Sbjct: 171 VALRDLFR--RFDLKPYDEKEHSGLIRNLVVRRGHY 204
>gi|407796698|ref|ZP_11143650.1| RNA methyltransferase, TrmA family protein [Salimicrobium sp. MJ3]
gi|407018852|gb|EKE31572.1| RNA methyltransferase, TrmA family protein [Salimicrobium sp. MJ3]
Length = 470
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 159 GLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR 218
GL+A D ++ ID+CL+ A+ ++A +++ L Y+ ++ GFL+H++++
Sbjct: 161 GLYAANSHD-LIEIDRCLIHDPKADAIIATIKELL--VSFKLRAYNEDTNRGFLRHVLIK 217
Query: 219 TG 220
TG
Sbjct: 218 TG 219
>gi|419468894|ref|ZP_14008765.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA06083]
gi|421309464|ref|ZP_15760091.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA62681]
gi|379546997|gb|EHZ12135.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA06083]
gi|395910885|gb|EJH21754.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA62681]
Length = 543
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 73/156 (46%), Gaps = 25/156 (16%)
Query: 76 PIRGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAEMEF-- 133
P R Q+L+L AY G+ AD G + +++ K + K A++E
Sbjct: 65 PHRNQDLDL-----AYLRSGI---ADLGHLSYPEQLKFKTKQVKDSLYKIAGIADVEVAE 116
Query: 134 SFG---PKRWFPKESLPKRGDHIENYALGLHAPGFFDK----VLNIDKCLLQSEPANLVL 186
+ G P ++ K +P R + G+ GFF K ++ ++ +Q + V+
Sbjct: 117 TLGMEHPVKYRNKAQVPVRRVN------GVLETGFFRKNSHNLMPLEDFFIQDPVIDQVV 170
Query: 187 AAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGSF 222
A++D +R + L PYD HSG +++L++R G +
Sbjct: 171 VALRDLFR--RFDLKPYDEKEHSGLIRNLVVRRGHY 204
>gi|295094140|emb|CBK83231.1| 23S rRNA m(5)U-1939 methyltransferase [Coprococcus sp. ART55/1]
Length = 550
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 14/94 (14%)
Query: 125 KGSYAEMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANL 184
KG +MEFSFG + K G ALGLH ++ +D C + ++ N
Sbjct: 126 KGYRNKMEFSFGDEY--------KDGP----LALGLHKKNSTYDIVQMDDCYIVNDDLNK 173
Query: 185 VLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR 218
++ ++ R GL Y H+G L+HL++R
Sbjct: 174 IVKYTVEFCRAA--GLPYYKKMQHTGLLRHLVIR 205
>gi|403669961|ref|ZP_10935137.1| RNA methyltransferase [Kurthia sp. JC8E]
Length = 453
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 35/51 (68%), Gaps = 4/51 (7%)
Query: 169 VLNIDKCLLQSEPANLVLAAVQ-DYWRDPQLGLSPYDVHSHSGFLKHLMLR 218
+++ ++CL+Q++ A+ +L+ ++ W LGL PYD ++ G L+H+++R
Sbjct: 155 IVDTERCLIQTDEADAILSGLKPKLW---ALGLQPYDEYTKRGQLRHVVVR 202
>gi|419497212|ref|ZP_14036922.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47522]
gi|379601205|gb|EHZ65981.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA47522]
Length = 543
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 73/156 (46%), Gaps = 25/156 (16%)
Query: 76 PIRGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAEMEF-- 133
P R Q+L+L AY G+ AD G + +++ K + K A++E
Sbjct: 65 PHRNQDLDL-----AYLRSGI---ADLGHLSYPEQLKFKTKQVKDSLYKIAGIADVEVAE 116
Query: 134 SFG---PKRWFPKESLPKRGDHIENYALGLHAPGFFDK----VLNIDKCLLQSEPANLVL 186
+ G P ++ K +P R + G+ GFF K ++ ++ +Q + V+
Sbjct: 117 TLGMEHPVKYRNKAQVPVRRVN------GVLKTGFFRKNSHNLMPLEDFFIQDPVIDQVV 170
Query: 187 AAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGSF 222
A++D +R + L PYD HSG +++L++R G +
Sbjct: 171 VALRDLFR--RFDLKPYDEKEHSGLIRNLVVRRGHY 204
>gi|428320104|ref|YP_007117986.1| 23S rRNA m(5)U-1939 methyltransferase [Oscillatoria nigro-viridis
PCC 7112]
gi|428243784|gb|AFZ09570.1| 23S rRNA m(5)U-1939 methyltransferase [Oscillatoria nigro-viridis
PCC 7112]
Length = 470
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 10/70 (14%)
Query: 157 ALGLHAPGFFDK----VLNIDKCLLQSEPANLVLAAVQD--YWRDPQLGLSPYDVHSHSG 210
A G G++ K ++N+++C +Q N +L V++ +WRD Q+ YD H+G
Sbjct: 159 ATGQVQAGYYQKSTHKLVNLNQCPVQDPRLNPLLKEVKEDIHWRDWQV----YDEKKHTG 214
Query: 211 FLKHLMLRTG 220
L+HL LR G
Sbjct: 215 ELRHLSLRIG 224
>gi|347549150|ref|YP_004855478.1| putative RNA methyltransferase [Listeria ivanovii subsp. ivanovii
PAM 55]
gi|346982221|emb|CBW86215.1| Hypothetical RNA methyltransferase [Listeria ivanovii subsp.
ivanovii PAM 55]
Length = 453
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/211 (19%), Positives = 77/211 (36%), Gaps = 67/211 (31%)
Query: 78 RGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTR--KKGSYAEME--- 132
+ Q +E+ E L + G GV K+ G+ + LPGEK I ++T+ K +A ME
Sbjct: 8 KNQSIEITIEDLTHDGSGVGKI--DGYPLFIPNTLPGEKGIAKITKLNKNYGFARMENIE 65
Query: 133 ------------------------FSFGPKRWFPKESLPKRGDHIENY------ALGLHA 162
S+ + F + + + I LG+
Sbjct: 66 VISVDRVEPPCAVYSKCGGCSLQHLSYEGQLKFKRNQVEETMKRIGKLNVQVKETLGMEN 125
Query: 163 P--------------------GFFDK----VLNIDKCLLQSEPANLVLAAVQDYWRDPQL 198
P GF+ K ++++ CL+ +E + + ++ +
Sbjct: 126 PWRYRNKSQVPVGFVNGKLTAGFYQKRSHDIIDMTTCLIHNEQGDFAVQKTREIL--AKY 183
Query: 199 GLSPYDVHSHSGFLKHLMLR----TGSFMIC 225
G PY+ + G ++H+M R TG M+
Sbjct: 184 GTEPYNEKTGKGDIRHIMTRFAHTTGQLMLV 214
>gi|448589443|ref|ZP_21649602.1| tram domain-containing protein [Haloferax elongans ATCC BAA-1513]
gi|445735871|gb|ELZ87419.1| tram domain-containing protein [Haloferax elongans ATCC BAA-1513]
Length = 162
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 75 KPIR-GQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYA 129
+P+R G+E+ + E + G GV + D GF+V D +LP + I R+ + KGS+A
Sbjct: 47 QPVRPGEEVVVTVEDIHESGAGVGRTED-GFIVFVDGLLPDARAIVRIDQVKGSHA 101
>gi|402836418|ref|ZP_10884957.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Mogibacterium sp.
CM50]
gi|402271312|gb|EJU20559.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Mogibacterium sp.
CM50]
Length = 479
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 158 LGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLML 217
LG+H F ++ D+C L N VL A D+ D G S Y SH G L++L++
Sbjct: 79 LGMHKKKHFMSIVTCDECQLVPMDFNRVLRATLDFCIDK--GYSFYHKKSHQGLLRNLVV 136
Query: 218 RTG 220
R G
Sbjct: 137 RHG 139
>gi|430759113|ref|YP_007209037.1| NADH-dependent flavin oxidoreductase YqiG [Bacillus subtilis subsp.
subtilis str. BSP1]
gi|430023633|gb|AGA24239.1| NADH-dependent flavin oxidoreductase YqiG [Bacillus subtilis subsp.
subtilis str. BSP1]
Length = 372
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 73/186 (39%), Gaps = 32/186 (17%)
Query: 38 PFLFVSSPTIT-KTQTRTRTHDAKPQFETFDSNNNDYFKPIRGQELELV---CESLAYKG 93
PF F S TI + TH A + T DY P R +E+ +V C ++ G
Sbjct: 11 PFTFKSGVTINNRIAVAPMTHYASNEDGTISEAELDYIIP-RSKEMGMVITACANVTPDG 69
Query: 94 K---GVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAEMEFSFG----PKRWFPKESL 146
K G + D D +PG K + + + +G+ A ++ G P P++ +
Sbjct: 70 KAFPGQPAIHD-------DSNIPGLKKLAQAIQAQGAKAVVQIHHGGIECPSELVPQQDV 122
Query: 147 PKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVH 206
D FDK I + L + E N+V A + R + G ++H
Sbjct: 123 VGPSD-------------VFDKGKQIARALKEEEVENIVKAFGEATRRAIEAGFDGVEIH 169
Query: 207 SHSGFL 212
+G+L
Sbjct: 170 GANGYL 175
>gi|116327717|ref|YP_797437.1| RNA methyltransferase [Leptospira borgpetersenii serovar
Hardjo-bovis str. L550]
gi|116331622|ref|YP_801340.1| RNA methyltransferase [Leptospira borgpetersenii serovar
Hardjo-bovis str. JB197]
gi|116120461|gb|ABJ78504.1| RNA methyltransferase [Leptospira borgpetersenii serovar
Hardjo-bovis str. L550]
gi|116125311|gb|ABJ76582.1| RNA methyltransferase [Leptospira borgpetersenii serovar
Hardjo-bovis str. JB197]
Length = 454
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 157 ALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRD-PQLGLSPYDVHSHSGFLKHL 215
+G G F V++++ C +QSE +N L + + P L PY+ S SGFLK+L
Sbjct: 136 VIGQRKSGSFRHVVDLEFCFIQSEESNAELKRFRSLISEFPDL---PYNRKSDSGFLKYL 192
Query: 216 MLRTGS 221
LR +
Sbjct: 193 TLRKAT 198
>gi|418080483|ref|ZP_12717695.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 6735-05]
gi|418105096|ref|ZP_12742154.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA44500]
gi|418135088|ref|ZP_12771945.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA11426]
gi|353753023|gb|EHD33647.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 6735-05]
gi|353777161|gb|EHD57634.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA44500]
gi|353902325|gb|EHE77855.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae GA11426]
Length = 505
Score = 39.3 bits (90), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 73/156 (46%), Gaps = 25/156 (16%)
Query: 76 PIRGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAEMEF-- 133
P R Q+L+L AY G+ AD G + +++ K + K A++E
Sbjct: 65 PHRNQDLDL-----AYLRSGI---ADLGHLSYPEQLKFKTKQVKDSLYKIAGIADVEVAE 116
Query: 134 SFG---PKRWFPKESLPKRGDHIENYALGLHAPGFFDK----VLNIDKCLLQSEPANLVL 186
+ G P ++ K +P R + G+ GFF K ++ ++ +Q + V+
Sbjct: 117 TLGMEHPVKYRNKAQVPVRRVN------GVLETGFFRKNSHNLMPLEDFFIQDPVIDQVV 170
Query: 187 AAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGSF 222
A++D +R + L PYD HSG +++L++R G +
Sbjct: 171 VALRDLFR--RFDLKPYDEKEHSGLIRNLVVRRGHY 204
>gi|421095914|ref|ZP_15556622.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Leptospira
borgpetersenii str. 200801926]
gi|410361329|gb|EKP12374.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Leptospira
borgpetersenii str. 200801926]
gi|456890624|gb|EMG01432.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Leptospira
borgpetersenii str. 200701203]
Length = 438
Score = 38.9 bits (89), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 157 ALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRD-PQLGLSPYDVHSHSGFLKHL 215
+G G F V++++ C +QSE +N L + + P L PY+ S SGFLK+L
Sbjct: 120 VIGQRKSGSFRHVVDLEFCFIQSEESNAELKRFRSLISEFPDL---PYNRKSDSGFLKYL 176
Query: 216 MLRTGS 221
LR +
Sbjct: 177 TLRKAT 182
>gi|418721053|ref|ZP_13280241.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Leptospira
borgpetersenii str. UI 09149]
gi|418735209|ref|ZP_13291621.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Leptospira
borgpetersenii serovar Castellonis str. 200801910]
gi|410742532|gb|EKQ91280.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Leptospira
borgpetersenii str. UI 09149]
gi|410749465|gb|EKR02357.1| putative 23S rRNA (uracil-5-)-methyltransferase RumA [Leptospira
borgpetersenii serovar Castellonis str. 200801910]
Length = 454
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 157 ALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRD-PQLGLSPYDVHSHSGFLKHL 215
+G G F V++++ C +QSE +N L + + P L PY+ S SGFLK+L
Sbjct: 136 VIGQRKSGSFRHVVDLEFCFIQSEESNAELKRFRSLISEFPDL---PYNRKSDSGFLKYL 192
Query: 216 MLRTGS 221
LR +
Sbjct: 193 TLRKAT 198
>gi|375087252|ref|ZP_09733634.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Megamonas funiformis
YIT 11815]
gi|374562069|gb|EHR33404.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Megamonas funiformis
YIT 11815]
Length = 457
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Query: 132 EFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQD 191
E+ + K FP K G + YA H ++N + C +Q N++ AV++
Sbjct: 128 EWHYRNKMQFPIGRSKKEGIIVGCYAHSSH------NIINTENCHIQKHTNNVIANAVRE 181
Query: 192 YWRDPQLGLSPYDVHSHSGFLKHLMLRT 219
+ LS YD +H G L+H++ RT
Sbjct: 182 MA--TKFKLSVYDEKTHYGLLRHVVGRT 207
>gi|334119702|ref|ZP_08493787.1| RNA methyltransferase, TrmA family [Microcoleus vaginatus FGP-2]
gi|333457864|gb|EGK86485.1| RNA methyltransferase, TrmA family [Microcoleus vaginatus FGP-2]
Length = 470
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 10/70 (14%)
Query: 157 ALGLHAPGFFDK----VLNIDKCLLQSEPANLVLAAVQD--YWRDPQLGLSPYDVHSHSG 210
A G G++ K ++N+++C +Q N +L V++ +WRD Q+ YD H+G
Sbjct: 159 ATGQVQAGYYQKSTHKLVNLNQCPVQDPRLNPLLKEVKEDIHWRDWQV----YDEKKHTG 214
Query: 211 FLKHLMLRTG 220
L+HL LR G
Sbjct: 215 ELRHLSLRIG 224
>gi|315652265|ref|ZP_07905257.1| 23S rRNA (uracil-5-)-methyltransferase [Lachnoanaerobaculum
saburreum DSM 3986]
gi|315485388|gb|EFU75778.1| 23S rRNA (uracil-5-)-methyltransferase [Lachnoanaerobaculum
saburreum DSM 3986]
Length = 475
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 51/99 (51%), Gaps = 18/99 (18%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSFG ++ K G+ ALG+H G ++N+ C + +L
Sbjct: 128 KMEFSFGDEK--------KDGE----LALGMHKKGSHYDIVNVFGCKIVDSDFTKLLELT 175
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMI 224
+++++ + + + ++H+GFL+HL++R TG ++
Sbjct: 176 LNFFKERNI--AYFHKNTHTGFLRHLLVRRSEYTGEILV 212
>gi|312880126|ref|ZP_07739926.1| RNA methyltransferase, TrmA family [Aminomonas paucivorans DSM
12260]
gi|310783417|gb|EFQ23815.1| RNA methyltransferase, TrmA family [Aminomonas paucivorans DSM
12260]
Length = 458
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 4/76 (5%)
Query: 78 RGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAEME----F 133
RG L L ++L +G+G+ + FVV LPGE GR+ +K YA +
Sbjct: 4 RGDILRLRIDTLNSEGEGIAREEGGSFVVFVPGALPGETVDGRILLRKARYARAQILQVL 63
Query: 134 SFGPKRWFPKESLPKR 149
S P R P L R
Sbjct: 64 SPSPDRSTPSCPLASR 79
>gi|448579130|ref|ZP_21644407.1| tram domain-containing protein [Haloferax larsenii JCM 13917]
gi|445723809|gb|ELZ75445.1| tram domain-containing protein [Haloferax larsenii JCM 13917]
Length = 162
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 75 KPIR-GQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYA 129
+P+R G+E+ + E + G GV + D GF+V D +LP + I R+ + KGS+A
Sbjct: 47 QPVRPGEEVVVTVEDIHESGAGVGRTED-GFIVFVDGLLPDARAIVRIDQVKGSHA 101
>gi|291532749|emb|CBL05862.1| 23S rRNA m(5)U-1939 methyltransferase [Megamonas hypermegale
ART12/1]
Length = 373
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 132 EFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQD 191
E+ + K FP K G + YA H ++N + C +Q N++ AV++
Sbjct: 21 EWHYRNKMQFPIGRSKKEGIIVGCYAHSSH------NIINTENCHIQKHTNNVIANAVRE 74
Query: 192 YWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
+ LS YD +H G L+H++ RT
Sbjct: 75 MA--TKFKLSVYDEKTHYGLLRHVVGRTN 101
>gi|429762233|ref|ZP_19294633.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerostipes hadrus
DSM 3319]
gi|429182047|gb|EKY23172.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Anaerostipes hadrus
DSM 3319]
Length = 457
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Query: 137 PKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDP 196
P + K P D N G +A G +++ C++Q +L V DY +
Sbjct: 126 PFYYRNKAQFPVGYDKEGNLITGFYA-GRTHHIIDCTHCMIQHPVNEQILLKVLDYMKKN 184
Query: 197 QLGLSPYDVHSHSGFLKHLMLR----TGSFMICAPV 228
+ + YD +H G ++H++ R TG M+C V
Sbjct: 185 NI--TAYDEKTHKGLVRHIVTRVGFKTGEIMVCLVV 218
>gi|317498564|ref|ZP_07956857.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
bacterium 5_1_63FAA]
gi|316894051|gb|EFV16240.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Lachnospiraceae
bacterium 5_1_63FAA]
Length = 360
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Query: 137 PKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDP 196
P + K P D N G +A G +++ C++Q +L V DY +
Sbjct: 27 PFYYRNKAQFPVGYDKEGNLITGFYA-GRTHHIIDCTHCMIQHPVNEQILLKVLDYMKKN 85
Query: 197 QLGLSPYDVHSHSGFLKHLMLR----TGSFMICAPV 228
+ + YD +H G ++H++ R TG M+C V
Sbjct: 86 NI--TAYDEKTHKGLVRHIVTRVGFKTGEIMVCLVV 119
>gi|167767439|ref|ZP_02439492.1| hypothetical protein CLOSS21_01958 [Clostridium sp. SS2/1]
gi|167710731|gb|EDS21310.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium sp. SS2/1]
gi|291558726|emb|CBL37526.1| 23S rRNA m(5)U-1939 methyltransferase [butyrate-producing bacterium
SSC/2]
Length = 457
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 7/96 (7%)
Query: 137 PKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDP 196
P + K P D N G +A G +++ C++Q +L V DY +
Sbjct: 126 PFYYRNKAQFPVGYDKEGNLITGFYA-GRTHHIIDCTHCMIQHPVNEQILLKVLDYMKKN 184
Query: 197 QLGLSPYDVHSHSGFLKHLMLR----TGSFMICAPV 228
+ + YD +H G ++H++ R TG M+C V
Sbjct: 185 NI--TAYDEKTHKGLVRHIVTRVGFKTGEIMVCLVV 218
>gi|428770154|ref|YP_007161944.1| 23S rRNA m(5)U-1939 methyltransferase [Cyanobacterium aponinum PCC
10605]
gi|428684433|gb|AFZ53900.1| 23S rRNA m(5)U-1939 methyltransferase [Cyanobacterium aponinum PCC
10605]
Length = 450
Score = 38.9 bits (89), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 42/203 (20%), Positives = 76/203 (37%), Gaps = 64/203 (31%)
Query: 78 RGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAEME----- 132
+G +E+ + ++ +G GV +V VV + G++ R+ R K YA+ +
Sbjct: 4 QGDLVEVEIDDVSSEGSGVARVDQQ--VVFIPNTVTGDRISSRIVRVKKKYAQGQLEEFR 61
Query: 133 ----------------------------FSFGPKRWFPKESLPKRGDHIE---------- 154
+ K+ KE+L + G +
Sbjct: 62 KNSAYRIRPRCIVADKCGGCQWQHINYSYQLQLKQNQVKETLTRIGGFADLQVEPIISGE 121
Query: 155 --------NYALGLHAPGFFD---------KVLNIDKCLLQSEPANLVLAAVQDYWRDPQ 197
NY LG+ G +++NI++C +Q + N +LA ++ + Q
Sbjct: 122 DLSYRNKVNYPLGVSHTGQIKAGYYRQGSHQIVNINQCPIQDQRLNPLLAEIKQDLQ--Q 179
Query: 198 LGLSPYDVHSHSGFLKHLMLRTG 220
L + YD +H G L+HL R G
Sbjct: 180 LQIPIYDEKNHKGALRHLCFRIG 202
>gi|448582637|ref|ZP_21646141.1| tram domain-containing protein [Haloferax gibbonsii ATCC 33959]
gi|445732285|gb|ELZ83868.1| tram domain-containing protein [Haloferax gibbonsii ATCC 33959]
Length = 140
Score = 38.5 bits (88), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 75 KPIR-GQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYA 129
+P++ G+E+ + E + G GV + D GF+V D +LP + I R+ R KGS+A
Sbjct: 28 QPVKPGEEVIVTVEDIHESGAGVGRTED-GFIVFVDGLLPDARAIVRIDRVKGSHA 82
>gi|160933690|ref|ZP_02081078.1| hypothetical protein CLOLEP_02551 [Clostridium leptum DSM 753]
gi|156867567|gb|EDO60939.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium leptum DSM
753]
Length = 460
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
Query: 139 RWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQL 198
R+ K LP D +G +A +++ I+ C LQ + +A+V+ + + ++
Sbjct: 127 RYRNKAQLPIGADRDGRGIMGFYAL-HSHRIVPIEDCPLQPKMFAQAVASVKQWMEEYKV 185
Query: 199 GLSPYDVHSHSGFLKHLMLR----TGSFMIC 225
+ Y SHSG L+HL LR TG+ M+C
Sbjct: 186 PV--YHEESHSGLLRHLYLREASATGALMVC 214
>gi|448560661|ref|ZP_21634109.1| tram domain-containing protein [Haloferax prahovense DSM 18310]
gi|445722311|gb|ELZ73974.1| tram domain-containing protein [Haloferax prahovense DSM 18310]
Length = 143
Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 75 KPIR-GQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYA 129
+P++ G+E+ + E + G GV + D GF+V D +LP + I R+ R KGS+A
Sbjct: 28 QPVKPGEEVIVTVEDIHESGAGVGRTED-GFIVFVDGLLPDARAIVRIDRVKGSHA 82
>gi|448407709|ref|ZP_21573904.1| deoxyribonuclease/rho domain-containing protein [Halosimplex
carlsbadense 2-9-1]
gi|445674959|gb|ELZ27494.1| deoxyribonuclease/rho domain-containing protein [Halosimplex
carlsbadense 2-9-1]
Length = 151
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 10/71 (14%)
Query: 71 NDYFKPIR---------GQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRV 121
N Y +PI GQE+E+ E + G GV + D GF+++ D VLP + ++
Sbjct: 35 NHYNQPIEDLKSQPVQPGQEVEVAVEDIHESGAGVGRTED-GFIIMVDGVLPPARAKVKI 93
Query: 122 TRKKGSYAEME 132
T+ + ++A E
Sbjct: 94 TKVRSNHARAE 104
>gi|254443794|ref|ZP_05057270.1| 23S rRNA (uracil-5-)-methyltransferase [Verrucomicrobiae bacterium
DG1235]
gi|198258102|gb|EDY82410.1| 23S rRNA (uracil-5-)-methyltransferase [Verrucomicrobiae bacterium
DG1235]
Length = 414
Score = 38.5 bits (88), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 12/83 (14%)
Query: 54 TRTHDAKPQFETFDSNNNDYFKPI---RGQELELVCESLAYKGKGVCKVADTGFVVLCDR 110
T HD+KP FKP+ QE+EL ++L G+G+ ++ D +VV+
Sbjct: 2 TENHDSKP-------TPPRKFKPVPFEYHQEIELEIDTLTNMGQGLGRIDD--WVVMVRF 52
Query: 111 VLPGEKFIGRVTRKKGSYAEMEF 133
LPGE+ RV R +++E +
Sbjct: 53 ALPGERVKARVYRNDKNFSEADL 75
>gi|86604758|ref|YP_473521.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus sp.
JA-3-3Ab]
gi|86553300|gb|ABC98258.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Synechococcus sp.
JA-3-3Ab]
Length = 464
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Query: 137 PKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDP 196
P R+ K + P + +G + PG +++N+++C +Q E ++ L ++ RD
Sbjct: 138 PLRYRNKVTYPIAKAEGQPLRMGYYRPGSH-RLVNLNQCPVQDERLDVFLREIK---RDL 193
Query: 197 Q-LGLSPYDVHSHSGFLKHLMLRTG 220
Q G S YD H G L+HL LR G
Sbjct: 194 QEAGWSVYDESRHQGHLRHLGLRIG 218
>gi|319937265|ref|ZP_08011672.1| hypothetical protein HMPREF9488_02507 [Coprobacillus sp. 29_1]
gi|319807631|gb|EFW04224.1| hypothetical protein HMPREF9488_02507 [Coprobacillus sp. 29_1]
Length = 379
Score = 38.5 bits (88), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 154 ENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLK 213
+ Y GL+ G +++ I +C+L + + +L +Q + + S YD H GFLK
Sbjct: 63 QRYEYGLYEEGS-HRIVPIQQCMLHDQETHHILLKIQSLLK--KYRTSIYDHQRHKGFLK 119
Query: 214 HLMLR 218
H+++R
Sbjct: 120 HVLIR 124
>gi|389845771|ref|YP_006348010.1| hypothetical protein HFX_0284 [Haloferax mediterranei ATCC 33500]
gi|448616609|ref|ZP_21665319.1| hypothetical protein C439_08960 [Haloferax mediterranei ATCC 33500]
gi|388243077|gb|AFK18023.1| hypothetical protein HFX_0284 [Haloferax mediterranei ATCC 33500]
gi|445751264|gb|EMA02701.1| hypothetical protein C439_08960 [Haloferax mediterranei ATCC 33500]
Length = 155
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 75 KPIR-GQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYA 129
+P++ G+E+ + E + G GV + D GF+V D +LP + + R+ R KGS+A
Sbjct: 47 QPVKPGEEVVVTVEDIHESGAGVGRTED-GFIVFVDGLLPDARAVVRIDRVKGSHA 101
>gi|187932429|ref|YP_001884796.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
B str. Eklund 17B]
gi|187720582|gb|ACD21803.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
B str. Eklund 17B]
Length = 450
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 18/99 (18%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEF+FG + K GD ++G+H G ++ +D C + E ++
Sbjct: 127 KMEFTFGDEE--------KGGD----LSIGMHMRGKSFGIMTVDHCKIVDEDYRRIIRLT 174
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMI 224
DY+ + L Y V G+L+HL++R TG ++
Sbjct: 175 ADYF--GKQDLPYYRVMKREGYLRHLVIRKAQNTGEILV 211
>gi|419431539|ref|ZP_13971679.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae EU-NP05]
gi|379630106|gb|EHZ94696.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae EU-NP05]
Length = 347
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 73/156 (46%), Gaps = 25/156 (16%)
Query: 76 PIRGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAEMEF-- 133
P R Q+L+L AY G+ AD G + +++ K + K A++E
Sbjct: 65 PHRNQDLDL-----AYLRSGI---ADLGHLSYPEQLKFKTKQVKDSLYKIAGIADVEVAE 116
Query: 134 SFG---PKRWFPKESLPKRGDHIENYALGLHAPGFFDK----VLNIDKCLLQSEPANLVL 186
+ G P ++ K +P R + G+ GFF K ++ ++ +Q + V+
Sbjct: 117 TLGMEHPVKYRNKAQVPVRRVN------GVLETGFFRKNSHNLMPLEDFFIQDPVIDQVV 170
Query: 187 AAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGSF 222
A++D +R + L PYD HSG +++L++R G +
Sbjct: 171 VALRDLFR--RFDLKPYDEKEHSGLIRNLVVRRGHY 204
>gi|294101799|ref|YP_003553657.1| TrmA family RNA methyltransferase [Aminobacterium colombiense DSM
12261]
gi|293616779|gb|ADE56933.1| RNA methyltransferase, TrmA family [Aminobacterium colombiense DSM
12261]
Length = 464
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 14/92 (15%)
Query: 137 PKRW--FPKESLPKRGDHIENYALGLHAPGFFDK----VLNIDKCLLQSEPANLVLAAVQ 190
PK W K S P R + G GFF + ++ ID C + N +L+
Sbjct: 130 PKEWGYRNKASFPVRNN------AGKTDIGFFRRRSHSIIPIDTCPVLEPALNHMLSYFI 183
Query: 191 DYWRDPQLGLSPYDVHSHSGFLKHLMLRTGSF 222
D + L PYD HSG L+H++ R GSF
Sbjct: 184 DSLE--CINLPPYDEKKHSGLLRHVIFRCGSF 213
>gi|255514064|gb|EET90327.1| deoxyribonuclease/rho motif-related TRAM [Candidatus Micrarchaeum
acidiphilum ARMAN-2]
Length = 102
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 73 YF--KPIR-GQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYA 129
YF KP++ G E+E+ E++A KG G+ KV GFV+ G+K ++T K YA
Sbjct: 40 YFLEKPVKVGDEVEVTIEAVASKGDGIAKV--NGFVIFIKGAKQGDKLKVKITEVKARYA 97
>gi|448543802|ref|ZP_21625263.1| tram domain-containing protein [Haloferax sp. ATCC BAA-646]
gi|448558808|ref|ZP_21633221.1| tram domain-containing protein [Haloferax sp. ATCC BAA-644]
gi|445705944|gb|ELZ57831.1| tram domain-containing protein [Haloferax sp. ATCC BAA-646]
gi|445712041|gb|ELZ63826.1| tram domain-containing protein [Haloferax sp. ATCC BAA-644]
Length = 141
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 75 KPIR-GQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYA 129
+P++ G+E+ + E + G GV + D GF+V D +LP + I R+ R KGS+A
Sbjct: 28 QPVKPGEEVIVTVEDIHESGAGVGRTED-GFIVFVDGLLPDARAIVRIDRVKGSHA 82
>gi|188588342|ref|YP_001919973.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
E3 str. Alaska E43]
gi|251777708|ref|ZP_04820628.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
E1 str. 'BoNT E Beluga']
gi|188498623|gb|ACD51759.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
E3 str. Alaska E43]
gi|243082023|gb|EES47913.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium botulinum
E1 str. 'BoNT E Beluga']
Length = 450
Score = 38.1 bits (87), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 18/99 (18%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEF+FG + K GD ++G+H G ++ +D C + E ++
Sbjct: 127 KMEFTFGDEE--------KGGD----LSIGMHMRGKSFGIMTVDHCKIVDEDYRKIIRLT 174
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMI 224
DY+ + L Y V G+L+HL++R TG ++
Sbjct: 175 ADYF--GKQDLPYYRVMKREGYLRHLVIRKAQNTGEILV 211
>gi|317132473|ref|YP_004091787.1| RNA methyltransferase, TrmA family [Ethanoligenens harbinense
YUAN-3]
gi|315470452|gb|ADU27056.1| RNA methyltransferase, TrmA family [Ethanoligenens harbinense
YUAN-3]
Length = 453
Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
Query: 158 LGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLML 217
G +AP ++++ ++CLLQ VL A + + + + S YD + G L+H+ L
Sbjct: 143 FGFYAPRSH-RIVSAEECLLQPSVFKNVLGAFERWMLENDV--STYDEQTGKGVLRHVFL 199
Query: 218 R----TGSFMICAPV 228
R TG MICA V
Sbjct: 200 RQAPSTGELMICAVV 214
>gi|436840215|ref|YP_007324593.1| RNA methyltransferase, TrmA family [Desulfovibrio hydrothermalis
AM13 = DSM 14728]
gi|432169121|emb|CCO22487.1| RNA methyltransferase, TrmA family [Desulfovibrio hydrothermalis
AM13 = DSM 14728]
Length = 465
Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 68 SNNNDYFKPI-RGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKG 126
SN N PI +G +E+ ESLA+ G+G+ + G + DR +PG+ +T+ K
Sbjct: 2 SNEN---TPITKGSTIEVTIESLAFGGQGIAR--HEGMTIFVDRAVPGQVVRCEITKLKK 56
Query: 127 SYAE 130
+AE
Sbjct: 57 RFAE 60
>gi|418116763|ref|ZP_12753734.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 6963-05]
gi|421234016|ref|ZP_15690637.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2061617]
gi|353789740|gb|EHD70132.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 6963-05]
gi|395601772|gb|EJG61918.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Streptococcus
pneumoniae 2061617]
Length = 347
Score = 38.1 bits (87), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 73/156 (46%), Gaps = 25/156 (16%)
Query: 76 PIRGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAEMEF-- 133
P R Q+L+L AY G+ AD G + +++ K + K A++E
Sbjct: 65 PHRNQDLDL-----AYLRSGI---ADLGHLSYPEQLKFKTKQVKDSLYKIAGIADVEVAE 116
Query: 134 SFG---PKRWFPKESLPKRGDHIENYALGLHAPGFFDK----VLNIDKCLLQSEPANLVL 186
+ G P ++ K +P R + G+ GFF K ++ ++ +Q + V+
Sbjct: 117 TLGMEHPVKYRNKAQVPVRRVN------GVLETGFFRKNSHNLMPLEDFFIQDPVIDQVV 170
Query: 187 AAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGSF 222
A++D +R + L PYD HSG +++L++R G +
Sbjct: 171 VALRDLFR--RFDLKPYDEKEHSGLIRNLVVRRGHY 204
>gi|448550875|ref|ZP_21629104.1| tram domain-containing protein [Haloferax sp. ATCC BAA-645]
gi|445710820|gb|ELZ62616.1| tram domain-containing protein [Haloferax sp. ATCC BAA-645]
Length = 160
Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 75 KPIR-GQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYA 129
+P++ G+E+ + E + G GV + D GF+V D +LP + I R+ R KGS+A
Sbjct: 47 QPVKPGEEVIVTVEDIHESGAGVGRTED-GFIVFVDGLLPDARAIVRIDRVKGSHA 101
>gi|227535460|ref|ZP_03965509.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus paracasei subsp.
paracasei ATCC 25302]
gi|227186870|gb|EEI66937.1| tRNA (uracil-5-)-methyltransferase [Lactobacillus paracasei subsp.
paracasei ATCC 25302]
Length = 457
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 78 RGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYA 129
+ Q+LE+ + L Y+G GV KV GF + + LPGEK V + + Y
Sbjct: 11 KNQDLEVTIQDLTYEGMGVAKV--DGFPLFIEDALPGEKMQVHVLKTQKQYG 60
>gi|224543217|ref|ZP_03683756.1| hypothetical protein CATMIT_02417 [Catenibacterium mitsuokai DSM
15897]
gi|224523850|gb|EEF92955.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Catenibacterium
mitsuokai DSM 15897]
Length = 448
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 38/66 (57%), Gaps = 6/66 (9%)
Query: 159 GLHAPGFF----DKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKH 214
G GF+ + ++N D CL+Q+E +N V+ +++ + + + PYD + SG +KH
Sbjct: 137 GHIVSGFYKARTNDIINNDYCLIQNEFSNKVIKRIKELFE--EYHIQPYDKITKSGNIKH 194
Query: 215 LMLRTG 220
++ +T
Sbjct: 195 VLTKTS 200
>gi|292654478|ref|YP_003534375.1| tram domain-containing protein [Haloferax volcanii DS2]
gi|448293519|ref|ZP_21483625.1| tram domain-containing protein [Haloferax volcanii DS2]
gi|291372245|gb|ADE04472.1| tram domain protein [Haloferax volcanii DS2]
gi|445570573|gb|ELY25133.1| tram domain-containing protein [Haloferax volcanii DS2]
Length = 160
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 75 KPIR-GQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYA 129
+P++ G+E+ + E + G GV + D GF+V D +LP + I R+ R KGS+A
Sbjct: 47 QPVKPGEEVIVTVEDIHESGAGVGRTED-GFIVFVDGLLPDARAIVRIDRVKGSHA 101
>gi|417986373|ref|ZP_12626944.1| TrmA family RNA methyltransferase [Lactobacillus casei 32G]
gi|410526097|gb|EKQ00988.1| TrmA family RNA methyltransferase [Lactobacillus casei 32G]
Length = 454
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 78 RGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYA 129
+ Q+LE+ + L Y+G GV KV GF + + LPGEK V + + Y
Sbjct: 8 KNQDLEVTIQDLTYEGMGVAKV--DGFPLFIEDALPGEKMQVHVLKTQKQYG 57
>gi|166033314|ref|ZP_02236143.1| hypothetical protein DORFOR_03040 [Dorea formicigenerans ATCC
27755]
gi|166027671|gb|EDR46428.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Dorea formicigenerans
ATCC 27755]
Length = 461
Score = 38.1 bits (87), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 14/89 (15%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSFG + K G ALG+H G F ++N+ C + +LA
Sbjct: 129 KMEFSFGDEY--------KDGP----LALGMHKRGSFHDIVNVCDCQIVDGDYRKILACT 176
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR 218
+ R+ GL Y H G+ +HL++R
Sbjct: 177 LECARES--GLPYYHRMRHEGYFRHLLVR 203
>gi|448573365|ref|ZP_21640949.1| tram domain-containing protein [Haloferax lucentense DSM 14919]
gi|445719130|gb|ELZ70813.1| tram domain-containing protein [Haloferax lucentense DSM 14919]
Length = 160
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 75 KPIR-GQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYA 129
+P++ G+E+ + E + G GV + D GF+V D +LP + I R+ R KGS+A
Sbjct: 47 QPVKPGEEVIVTVEDIHESGAGVGRTED-GFIVFVDGLLPDARAIVRIDRVKGSHA 101
>gi|428773959|ref|YP_007165747.1| 23S rRNA m(5)U-1939 methyltransferase [Cyanobacterium stanieri PCC
7202]
gi|428688238|gb|AFZ48098.1| 23S rRNA m(5)U-1939 methyltransferase [Cyanobacterium stanieri PCC
7202]
Length = 452
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 168 KVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
+++N+++C +Q E N +LA ++ + +LG+ YD ++ G L+HL R G
Sbjct: 152 QIINLNQCPIQDERLNPLLAEIKQDLQ--ELGIPIYDENTKKGILRHLCFRIG 202
>gi|433422900|ref|ZP_20406095.1| tram domain-containing protein, partial [Haloferax sp. BAB2207]
gi|432198482|gb|ELK54759.1| tram domain-containing protein, partial [Haloferax sp. BAB2207]
Length = 142
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 75 KPIR-GQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYA 129
+P++ G+E+ + E + G GV + D GF+V D +LP + I R+ R KGS+A
Sbjct: 29 QPVKPGEEVIVTVEDIHESGAGVGRTED-GFIVFVDGLLPDARAIVRIDRVKGSHA 83
>gi|417989283|ref|ZP_12629793.1| TrmA family RNA methyltransferase [Lactobacillus casei A2-362]
gi|417992607|ref|ZP_12632962.1| TrmA family RNA methyltransferase [Lactobacillus casei CRF28]
gi|418001683|ref|ZP_12641818.1| TrmA family RNA methyltransferase [Lactobacillus casei UCD174]
gi|410533186|gb|EKQ07873.1| TrmA family RNA methyltransferase [Lactobacillus casei CRF28]
gi|410538886|gb|EKQ13430.1| TrmA family RNA methyltransferase [Lactobacillus casei A2-362]
gi|410545944|gb|EKQ20222.1| TrmA family RNA methyltransferase [Lactobacillus casei UCD174]
Length = 454
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 78 RGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYA 129
+ Q+LE+ + L Y+G GV KV GF + + LPGEK V + + Y
Sbjct: 8 KNQDLEVTIQDLTYEGMGVAKV--DGFPLFIEDALPGEKMQVHVLKTQKQYG 57
>gi|116494563|ref|YP_806297.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
casei ATCC 334]
gi|116104713|gb|ABJ69855.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
casei ATCC 334]
Length = 454
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 78 RGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYA 129
+ Q+LE+ + L Y+G GV KV GF + + LPGEK V + + Y
Sbjct: 8 KNQDLEVTIQDLTYEGMGVAKV--DGFPLFIEDALPGEKMQVHVLKTQKQYG 57
>gi|417995861|ref|ZP_12636148.1| TrmA family RNA methyltransferase [Lactobacillus casei M36]
gi|417998776|ref|ZP_12638991.1| TrmA family RNA methyltransferase [Lactobacillus casei T71499]
gi|418004780|ref|ZP_12644790.1| TrmA family RNA methyltransferase [Lactobacillus casei UW1]
gi|418007683|ref|ZP_12647560.1| TrmA family RNA methyltransferase [Lactobacillus casei UW4]
gi|418013452|ref|ZP_12653096.1| TrmA family RNA methyltransferase [Lactobacillus casei Lpc-37]
gi|410536565|gb|EKQ11158.1| TrmA family RNA methyltransferase [Lactobacillus casei M36]
gi|410540380|gb|EKQ14895.1| TrmA family RNA methyltransferase [Lactobacillus casei T71499]
gi|410548399|gb|EKQ22601.1| TrmA family RNA methyltransferase [Lactobacillus casei UW4]
gi|410548711|gb|EKQ22900.1| TrmA family RNA methyltransferase [Lactobacillus casei UW1]
gi|410555978|gb|EKQ29909.1| TrmA family RNA methyltransferase [Lactobacillus casei Lpc-37]
Length = 454
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 78 RGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYA 129
+ Q+LE+ + L Y+G GV KV GF + + LPGEK V + + Y
Sbjct: 8 KNQDLEVTIQDLTYEGMGVAKV--DGFPLFIEDALPGEKMQVHVLKTQKQYG 57
>gi|301066110|ref|YP_003788133.1| tRNA (uracil-5-)-methyltransferase-like protein [Lactobacillus
casei str. Zhang]
gi|300438517|gb|ADK18283.1| tRNA (uracil-5-)-methyltransferase related enzyme [Lactobacillus
casei str. Zhang]
Length = 454
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 78 RGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYA 129
+ Q+LE+ + L Y+G GV KV GF + + LPGEK V + + Y
Sbjct: 8 KNQDLEVTIQDLTYEGMGVAKV--DGFPLFIEDALPGEKMQVHVLKTQKQYG 57
>gi|163813943|ref|ZP_02205337.1| hypothetical protein COPEUT_00096 [Coprococcus eutactus ATCC 27759]
gi|158450813|gb|EDP27808.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Coprococcus eutactus
ATCC 27759]
Length = 457
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 14/94 (14%)
Query: 125 KGSYAEMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANL 184
+G +MEFSFG + K G ALGLH ++ +D C + ++ N
Sbjct: 126 QGYRNKMEFSFGDEY--------KDGP----LALGLHKKNSTYDIVQMDDCYIVNDDLNK 173
Query: 185 VLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR 218
++ ++ R GL Y H+G L+HL++R
Sbjct: 174 IVKYTVEFCR--AAGLPYYKKMQHTGLLRHLVIR 205
>gi|418010491|ref|ZP_12650268.1| TrmA family RNA methyltransferase [Lactobacillus casei Lc-10]
gi|410553980|gb|EKQ27968.1| TrmA family RNA methyltransferase [Lactobacillus casei Lc-10]
Length = 454
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 78 RGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYA 129
+ Q+LE+ + L Y+G GV KV GF + + LPGEK V + + Y
Sbjct: 8 KNQDLEVTIQDLTYEGMGVAKV--DGFPLFIEDALPGEKMQVHVLKTQKQYG 57
>gi|448597619|ref|ZP_21654544.1| tram domain-containing protein [Haloferax alexandrinus JCM 10717]
gi|445739080|gb|ELZ90589.1| tram domain-containing protein [Haloferax alexandrinus JCM 10717]
Length = 147
Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 75 KPIR-GQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYA 129
+P++ G+E+ + E + G GV + D GF+V D +LP + I R+ R KGS+A
Sbjct: 28 QPVKPGEEVIVTVEDIHESGAGVGRTED-GFIVFVDGLLPDARAIVRIDRVKGSHA 82
>gi|239631838|ref|ZP_04674869.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|417980266|ref|ZP_12620947.1| TrmA family RNA methyltransferase [Lactobacillus casei 12A]
gi|239526303|gb|EEQ65304.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|410525493|gb|EKQ00395.1| TrmA family RNA methyltransferase [Lactobacillus casei 12A]
Length = 453
Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 78 RGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYA 129
+ Q+LE+ + L Y+G GV KV GF + + LPGEK V + + Y
Sbjct: 8 KNQDLEVTIQDLTYEGMGVAKV--DGFPLFIEDALPGEKMQVHVLKTQKQYG 57
>gi|417983140|ref|ZP_12623782.1| TrmA family RNA methyltransferase [Lactobacillus casei 21/1]
gi|410528921|gb|EKQ03759.1| TrmA family RNA methyltransferase [Lactobacillus casei 21/1]
Length = 161
Score = 38.1 bits (87), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 78 RGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYA 129
+ Q+LE+ + L Y+G GV KV GF + + LPGEK V + + Y
Sbjct: 8 KNQDLEVTIQDLTYEGMGVAKV--DGFPLFIEDALPGEKMQVHVLKTQKQYG 57
>gi|255528224|ref|ZP_05395044.1| RNA methyltransferase, TrmA family [Clostridium carboxidivorans P7]
gi|296188118|ref|ZP_06856510.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
carboxidivorans P7]
gi|255508074|gb|EET84494.1| RNA methyltransferase, TrmA family [Clostridium carboxidivorans P7]
gi|296047244|gb|EFG86686.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Clostridium
carboxidivorans P7]
Length = 450
Score = 37.7 bits (86), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 16/92 (17%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEF+FG + ++G + LG+H G ++N+D C + E +L
Sbjct: 127 KMEFTFGDE---------EKGGEL---TLGMHIKGKSFGIVNVDNCKIVDEDFRKILDFT 174
Query: 190 QDYWR-DPQLGLSPYDVHSHSGFLKHLMLRTG 220
+Y+R +P L Y V G+L++L++R G
Sbjct: 175 VNYFRKNP---LPYYRVMKREGYLRNLVIRKG 203
>gi|443315531|ref|ZP_21045017.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Leptolyngbya sp. PCC
6406]
gi|442784879|gb|ELR94733.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Leptolyngbya sp. PCC
6406]
Length = 455
Score = 37.7 bits (86), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 13/76 (17%)
Query: 155 NYALGLHA-----PGFFDK----VLNIDKCLLQSEPANLVLAAVQDYWRDPQL-GLSPYD 204
Y LG+ A G++ K ++N+++C +Q + + +LA V+ +D Q G YD
Sbjct: 133 TYPLGVSAEGTVKAGYYRKGTHQIVNLNQCPVQDDRLDPLLAEVK---QDIQTQGWPIYD 189
Query: 205 VHSHSGFLKHLMLRTG 220
+HSG L+HL+LR G
Sbjct: 190 ETTHSGLLRHLVLRVG 205
>gi|158319773|ref|YP_001512280.1| RNA methyltransferase [Alkaliphilus oremlandii OhILAs]
gi|158139972|gb|ABW18284.1| RNA methyltransferase, TrmA family [Alkaliphilus oremlandii OhILAs]
Length = 450
Score = 37.7 bits (86), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 14/89 (15%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+ME++FG + +RG + +LGLH F + +N C + E L+ ++
Sbjct: 126 KMEYTFGDE---------ERGGPL---SLGLHMKNRFYESVNTWDCNIVDEDFTLIRESI 173
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR 218
+DY+ ++ Y+ H G L+HL++R
Sbjct: 174 RDYFEQKKVPF--YNKRQHKGVLRHLVIR 200
>gi|257063252|ref|YP_003142924.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Slackia
heliotrinireducens DSM 20476]
gi|256790905|gb|ACV21575.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Slackia
heliotrinireducens DSM 20476]
Length = 401
Score = 37.7 bits (86), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 169 VLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
V++ +CL+++ A ++ ++D P+ + PYD GFL+H +R G
Sbjct: 95 VIDSSECLIENAQAKAIILTIRDLM--PKFRIEPYDEDRDEGFLRHAQVRVG 144
>gi|346308777|ref|ZP_08850882.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Dorea formicigenerans
4_6_53AFAA]
gi|345901856|gb|EGX71652.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Dorea formicigenerans
4_6_53AFAA]
Length = 461
Score = 37.7 bits (86), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 14/89 (15%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEFSFG + K G ALG+H G F ++N+ C + +LA
Sbjct: 129 KMEFSFGDEY--------KDGP----LALGMHKRGSFHDIVNVCDCQIVDSDYRKILACT 176
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR 218
+ R + GL Y H G+ +HL++R
Sbjct: 177 LECAR--KSGLPYYHRMRHDGYFRHLLVR 203
>gi|330839061|ref|YP_004413641.1| RNA methyltransferase, TrmA family [Selenomonas sputigena ATCC
35185]
gi|329746825|gb|AEC00182.1| RNA methyltransferase, TrmA family [Selenomonas sputigena ATCC
35185]
Length = 458
Score = 37.4 bits (85), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 78 RGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYA 129
+G++ E+ ++L G+GV + AD F V LPGE+ + R+ K +YA
Sbjct: 9 QGKKYEITIQTLGTSGEGVGRAAD--FTVFVPDALPGERVLARIDEVKKTYA 58
>gi|260887170|ref|ZP_05898433.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Selenomonas sputigena
ATCC 35185]
gi|260863232|gb|EEX77732.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Selenomonas sputigena
ATCC 35185]
Length = 466
Score = 37.4 bits (85), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 78 RGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYA 129
+G++ E+ ++L G+GV + AD F V LPGE+ + R+ K +YA
Sbjct: 17 QGKKYEITIQTLGTSGEGVGRAAD--FTVFVPDALPGERVLARIDEVKKTYA 66
>gi|427413602|ref|ZP_18903793.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Veillonella ratti
ACS-216-V-Col6b]
gi|425715303|gb|EKU78294.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Veillonella ratti
ACS-216-V-Col6b]
Length = 457
Score = 37.4 bits (85), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 78 RGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYA 129
+GQ E+ ESL G+GV + GF V LPGE+ R+T K +YA
Sbjct: 9 KGQVYEIAIESLGNSGEGVGRY--EGFTVFVPFALPGERISARITLVKKNYA 58
>gi|168334686|ref|ZP_02692826.1| RNA methyltransferase, TrmA family protein [Epulopiscium sp. 'N.t.
morphotype B']
Length = 454
Score = 37.0 bits (84), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 12/123 (9%)
Query: 112 LPGEKFIGRVTRKKGSYAEMEFS--FGPKRWFPKESLPKR--GDHIEN--YALGLHAPGF 165
LP EK + R R E + G +WF + + GD +++ ALGLH
Sbjct: 87 LPYEKQLERKLRWVNQILNFEVAEILGSPKWFQYRNKMEYTFGDTVKDGPLALGLHKKRT 146
Query: 166 FDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGS 221
++ +D C + + N +L A ++ Y SH GFLK L++R TG
Sbjct: 147 TFDIVTVDDCKIVDDGFNAILRATLXFF--AVXNXPYYKKVSHQGFLKFLVVRRSETTGX 204
Query: 222 FMI 224
F++
Sbjct: 205 FLV 207
>gi|410583968|ref|ZP_11321073.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Thermaerobacter
subterraneus DSM 13965]
gi|410504830|gb|EKP94340.1| 23S rRNA (uracil-5-)-methyltransferase RumA [Thermaerobacter
subterraneus DSM 13965]
Length = 631
Score = 37.0 bits (84), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Query: 140 WF--PKESLPKRGDHIENYALGLHAPGFFDKV-LNIDKCLLQSEPANLVLAAVQDYWRDP 196
WF K +LP R A+G APG V L C +Q + V AA++ + +
Sbjct: 199 WFYRNKAALPVRRLPGGRVAMGFFAPGTHTVVDLEEHGCAIQHPVIDQVAAALRRWLEED 258
Query: 197 QLG--LSPYDVHSHSGFLKHLMLRTG 220
G S YD H G L+HL++R G
Sbjct: 259 PDGRATSTYDEERHQGLLRHLVVRVG 284
>gi|309790389|ref|ZP_07684954.1| (Uracil-5)-methyltransferase [Oscillochloris trichoides DG-6]
gi|308227581|gb|EFO81244.1| (Uracil-5)-methyltransferase [Oscillochloris trichoides DG6]
Length = 394
Score = 36.6 bits (83), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Query: 159 GLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR 218
GL A G F+ ++ + C L P AA + R +LGL Y++ SH GFL+++++R
Sbjct: 95 GLRARGKFNYIIELSTCHLI--PPAAFAAAHAVWVRANELGLPDYNIRSHEGFLRYVVVR 152
>gi|317121334|ref|YP_004101337.1| TrmA family RNA methyltransferase [Thermaerobacter marianensis DSM
12885]
gi|315591314|gb|ADU50610.1| RNA methyltransferase, TrmA family [Thermaerobacter marianensis DSM
12885]
Length = 685
Score = 36.6 bits (83), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 143 KESLPKRGDHIENYALGLHAPGFFDKV-LNIDKCLLQSEPANLVLAAVQDYWRDPQLG-- 199
K ++P R +G APG + L C +Q N V+AA++ + + G
Sbjct: 176 KAAIPVRRLPSGRVVMGFFAPGTHAVIDLEATGCAIQHPVINQVVAALRRWLEEDPDGRA 235
Query: 200 LSPYDVHSHSGFLKHLMLRTG 220
S YD H G L+HL++R G
Sbjct: 236 TSTYDETRHQGLLRHLVVRVG 256
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.138 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,815,329,436
Number of Sequences: 23463169
Number of extensions: 157089037
Number of successful extensions: 273536
Number of sequences better than 100.0: 821
Number of HSP's better than 100.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 561
Number of HSP's that attempted gapping in prelim test: 272422
Number of HSP's gapped (non-prelim): 1187
length of query: 229
length of database: 8,064,228,071
effective HSP length: 138
effective length of query: 91
effective length of database: 9,121,278,045
effective search space: 830036302095
effective search space used: 830036302095
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 74 (33.1 bits)