BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038639
(229 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8AA22|Y643_BACTN Uncharacterized RNA methyltransferase BT_0643 OS=Bacteroides
thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC
10582 / E50 / VPI-5482) GN=BT_0643 PE=3 SV=1
Length = 454
Score = 67.4 bits (163), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
++EF+F KRW + + + + + A+G H PG FDKVL I+KC LQ + +N + AV
Sbjct: 115 KLEFTFSNKRWLTNDEVRQDVKYDQMNAVGFHIPGAFDKVLAIEKCWLQDDISNRIRNAV 174
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+DY + S ++ + G L++L++RT S
Sbjct: 175 RDYAYEHD--YSFINLRTQEGMLRNLIIRTSS 204
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 89 LAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAEME----FSFGPKRWFP 142
+A +GK + KV D V+ V+PG+ ++ RKK YAE E P R P
Sbjct: 1 MAAEGKAIAKVND--LVIFVPYVVPGDVVDLQIKRKKNKYAEAEAVKFHELSPVRAVP 56
>sp|Q8KGF9|Y009_CHLTE Uncharacterized RNA methyltransferase CT0009 OS=Chlorobium tepidum
(strain ATCC 49652 / DSM 12025 / TLS) GN=CT0009 PE=3
SV=1
Length = 483
Score = 64.7 bits (156), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 54/92 (58%), Gaps = 7/92 (7%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHI---ENYALGLHAPGFFDKVLNIDKCLLQSEPANLVL 186
++EFS R+ + + D + + +ALG HAPG F+KVL++D C L E N VL
Sbjct: 141 KVEFSCSNMRYLLQSEID--SDQLAKPKTFALGFHAPGNFEKVLDLDTCYLAKECMNRVL 198
Query: 187 AAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR 218
++D+ + GL PY +H G+L++LMLR
Sbjct: 199 NVLRDFA--IERGLEPYAAKAHEGYLRNLMLR 228
>sp|Q7MVG9|Y1095_PORGI Uncharacterized RNA methyltransferase PG_1095 OS=Porphyromonas
gingivalis (strain ATCC BAA-308 / W83) GN=PG_1095 PE=3
SV=1
Length = 465
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 56/96 (58%), Gaps = 5/96 (5%)
Query: 130 EMEFSFGPKRWF-PKESLPKRGDHIEN--YALGLHAPGFFDKVLNIDKCLLQSEPANLVL 186
++EF+F KRW P+E GD Y LG H PG FDKVL+I +C L ++ ++ +
Sbjct: 120 KLEFTFSNKRWLLPEEVQEVDGDFSPEVRYGLGFHIPGMFDKVLDIRECHLGAKVSDEIR 179
Query: 187 AAVQDY-WRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+++Y +DP+ +D+ + G ++ LM+RT S
Sbjct: 180 LFIREYCMQDPER-YPFFDLRNQEGLMRTLMIRTTS 214
>sp|Q97J51|Y1435_CLOAB Uncharacterized RNA methyltransferase CA_C1435 OS=Clostridium
acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 /
LMG 5710 / VKM B-1787) GN=CA_C1435 PE=3 SV=1
Length = 456
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 18/100 (18%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+ME++FG K G+ LG+HA ++N DKC + E ++L V
Sbjct: 130 KMEYTFG--------DFVKGGE----LTLGMHAKNSGFSIVNTDKCNIVDEDFRIILKTV 177
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMIC 225
+Y+R L + Y V H G+L++L++R TG +I
Sbjct: 178 VEYFRKKDLPI--YKVMQHVGYLRNLVVRKAKNTGEILIA 215
>sp|Q8R933|Y1797_THETN Uncharacterized RNA methyltransferase TTE1797 OS=Thermoanaerobacter
tengcongensis (strain DSM 15242 / JCM 11007 / NBRC
100824 / MB4) GN=TTE1797 PE=3 SV=1
Length = 450
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 15/104 (14%)
Query: 118 IGRVTRKKGSYAEMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLL 177
I R + G +ME++FG R K ALGLH G F V+ DKC +
Sbjct: 115 IERSPKVYGYRNKMEYTFGTDREGKK-------------ALGLHRKGKFYDVVMTDKCNI 161
Query: 178 QSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
E L+ +Y + L YD +H G+L++L++R S
Sbjct: 162 VDEDFTKALSLTFNYALEKNLPF--YDKKTHEGYLRYLVVRKAS 203
>sp|Q892Z2|Y1941_CLOTE Uncharacterized RNA methyltransferase CTC_01941 OS=Clostridium
tetani (strain Massachusetts / E88) GN=CTC_01941 PE=3
SV=1
Length = 456
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 18/99 (18%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+MEF+FG L K G+ LG+HA G +++ D+C + E +L A
Sbjct: 129 KMEFTFG--------DLKKGGE----LNLGMHAKGMSFGIISADECKIVDEDYRNILNAT 176
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFMI 224
+Y+R+ Q L Y + + G+L++L++R TG ++
Sbjct: 177 LNYFREKQ--LPHYRIMAREGYLRNLVIRKAENTGEVLV 213
>sp|Q891A0|Y2481_CLOTE Uncharacterized RNA methyltransferase CTC_02481 OS=Clostridium
tetani (strain Massachusetts / E88) GN=CTC_02481 PE=3
SV=1
Length = 460
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 11/110 (10%)
Query: 123 RKKGSYAEMEFSFG---PKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQS 179
R G E+E G P R+ K LP G +G +AP + ++++ C +Q
Sbjct: 110 RLGGIDVEVEEVLGMENPYRYRNKVQLP-IGKEKGKVNIGFYAPRSHN-IIDLKSCFIQD 167
Query: 180 EPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLML----RTGSFMIC 225
E A+ ++ ++++ + +S YD H G L+H+M+ RTG MI
Sbjct: 168 EKADKIIKILKEWIE--KFNVSIYDEKEHKGNLRHIMVRTAFRTGQIMIV 215
>sp|Q92AQ7|Y1863_LISIN Uncharacterized RNA methyltransferase lin1863 OS=Listeria innocua
serovar 6a (strain CLIP 11262) GN=lin1863 PE=3 SV=1
Length = 453
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/211 (20%), Positives = 77/211 (36%), Gaps = 67/211 (31%)
Query: 78 RGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTR--KKGSYAEME--- 132
+ Q +EL E L + G GV K+ G+ + LPGEK ++T+ K +A ME
Sbjct: 8 KNQSVELTIEDLTHDGSGVGKI--DGYPLFIPNALPGEKITAKITKLNKNYGFARMENIE 65
Query: 133 ------------------------FSFGPKRWFPKESLPKRGDHIENY------ALGLHA 162
S+ + F + + + I LG+
Sbjct: 66 VVSAERVEPPCAVYSKCGGCSLQHLSYDGQLAFKRNQVEETMKRIGKLNVEVPDTLGMEN 125
Query: 163 P--------------------GFFDK----VLNIDKCLLQSEPANLVLAAVQDYWRDPQL 198
P GF+ K ++++ CL+ +E ++ + ++ +
Sbjct: 126 PWRYRNKSQVPVGFVNGKLTAGFYQKRSHDIIDMSTCLIHNEKGDVAVQKTREIL--AKY 183
Query: 199 GLSPYDVHSHSGFLKHLMLR----TGSFMIC 225
G PYD + G ++H+M R TG MI
Sbjct: 184 GTEPYDEKTGKGDIRHIMTRFAHTTGQLMIV 214
>sp|Q9KF10|Y687_BACHD Uncharacterized RNA methyltransferase BH0687 OS=Bacillus halodurans
(strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153
/ C-125) GN=BH0687 PE=3 SV=1
Length = 458
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 10/70 (14%)
Query: 164 GFFD----KVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR- 218
GF+ +++++D+C++Q E + V+ V++ R +LG+ YD H G L+H++ R
Sbjct: 150 GFYQERSHRIIDMDECMIQHEENDKVIRQVKELAR--ELGIRGYDEEKHRGTLRHVVARY 207
Query: 219 ---TGSFMIC 225
TG M+
Sbjct: 208 GKNTGEIMVV 217
>sp|Q8CRU6|Y1582_STAES Uncharacterized RNA methyltransferase SE_1582 OS=Staphylococcus
epidermidis (strain ATCC 12228) GN=SE_1582 PE=3 SV=2
Length = 456
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 136 GPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRD 195
P R+ K +P + +G + D ++++D CL+Q V+ V+ YW +
Sbjct: 124 NPWRYRNKSQIPVGQSNSNQVIMGFYRQRSHD-IIDMDSCLIQDRQHQEVMNRVK-YWLN 181
Query: 196 PQLGLSPYDVHSHSGFLKHLMLRTG 220
+L +S Y+ + +G ++HL++RTG
Sbjct: 182 -ELNISIYNEKTKTGLIRHLVVRTG 205
>sp|Q5HN37|Y1435_STAEQ Uncharacterized RNA methyltransferase SERP1435 OS=Staphylococcus
epidermidis (strain ATCC 35984 / RP62A) GN=SERP1435 PE=3
SV=1
Length = 456
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
Query: 136 GPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRD 195
P R+ K +P + +G + D ++++D CL+Q V+ V+ YW +
Sbjct: 124 NPWRYRNKSQIPVGQSNSNQVIMGFYRQRSHD-IIDMDSCLIQDRQHQEVMNRVK-YWLN 181
Query: 196 PQLGLSPYDVHSHSGFLKHLMLRTG 220
+L +S Y+ + +G ++HL++RTG
Sbjct: 182 -ELNISIYNEKTKTGLIRHLVVRTG 205
>sp|Q8XIK5|Y2114_CLOPE Uncharacterized RNA methyltransferase CPE2114 OS=Clostridium
perfringens (strain 13 / Type A) GN=CPE2114 PE=3 SV=1
Length = 451
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 14/89 (15%)
Query: 130 EMEFSFGPKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAV 189
+ME++FG + ++G + LG+H G ++N+DKC+L E +L
Sbjct: 127 KMEYTFGDE---------EKGGEL---TLGMHMKGKSFGIVNVDKCVLVDEDFRNILDTT 174
Query: 190 QDYWRDPQLGLSPYDVHSHSGFLKHLMLR 218
Y+R+ GL Y + +G+L++L++R
Sbjct: 175 VKYFREK--GLPFYKIMPRTGYLRYLVVR 201
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 78 RGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAEMEFS 134
+G E+EL+ E + + KG V G V PG+K GRVT+K+ YAE+ S
Sbjct: 3 KGNEIELLVEGIEFPAKGFGFV--DGLKVYAKNTFPGQKVFGRVTKKRKEYAEIRVS 57
>sp|Q71YR7|Y1776_LISMF Uncharacterized RNA methyltransferase LMOf2365_1776 OS=Listeria
monocytogenes serotype 4b (strain F2365)
GN=LMOf2365_1776 PE=3 SV=1
Length = 453
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/211 (20%), Positives = 75/211 (35%), Gaps = 67/211 (31%)
Query: 78 RGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTR--KKGSYAEME--- 132
+ Q +EL E L + G GV K+ G+ + LPGEK ++ + K +A ME
Sbjct: 8 KNQSIELTIEDLTHDGSGVGKI--DGYPLFIPNTLPGEKVTAKIIKLNKNYGFARMENIE 65
Query: 133 ------------------------FSFGPKRWFPKESLPKRGDHIENY------ALGLHA 162
S+ + F + + + I LG+
Sbjct: 66 TVSADRVEPPCAVYSKCGGCSLQHLSYDGQLEFKRNQVEETMKRIGKLNVEVPETLGMEN 125
Query: 163 P--------------------GFFDK----VLNIDKCLLQSEPANLVLAAVQDYWRDPQL 198
P GF+ K ++++ CL+ +E + + ++ +
Sbjct: 126 PWRYRNKSQVPVGFVNGKLTAGFYQKRSHAIIDMSTCLIHNEQGDFAVQKTREIL--AKY 183
Query: 199 GLSPYDVHSHSGFLKHLMLR----TGSFMIC 225
G PYD + G ++H+M R TG MI
Sbjct: 184 GTEPYDEQTGKGDIRHIMTRFAHTTGQLMIV 214
>sp|Q8Y6D6|Y1751_LISMO Uncharacterized RNA methyltransferase lmo1751 OS=Listeria
monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e)
GN=lmo1751 PE=3 SV=1
Length = 453
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 43/211 (20%), Positives = 74/211 (35%), Gaps = 67/211 (31%)
Query: 78 RGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTR--KKGSYAEME--- 132
+ Q +EL E L + G GV K+ G+ LPGEK ++ + K +A ME
Sbjct: 8 KNQSIELTIEDLTHDGSGVGKI--DGYPFFIPNTLPGEKVTAKIIKLNKNYGFARMENIE 65
Query: 133 ------------------------FSFGPKRWFPKESLPKRGDHIENY------ALGLHA 162
S+ + F + + + I LG+
Sbjct: 66 TVSANRVEPPCAVYSKCGGCSLQHLSYDGQLEFKRNQVEETMKRIGKLNVEVPETLGMEN 125
Query: 163 P--------------------GFFDK----VLNIDKCLLQSEPANLVLAAVQDYWRDPQL 198
P GF+ K ++++ CL+ +E + + ++ +
Sbjct: 126 PWRYRNKSQVPVGFVNGKLTAGFYQKRSHAIIDMSTCLIHNEQGDFAVQKTREIL--AKY 183
Query: 199 GLSPYDVHSHSGFLKHLMLR----TGSFMIC 225
G PYD + G ++H+M R TG MI
Sbjct: 184 GTEPYDEQTGKGDIRHIMTRFAHTTGQLMIV 214
>sp|Q8ES75|Y768_OCEIH Uncharacterized RNA methyltransferase OB0768 OS=Oceanobacillus
iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 /
HTE831) GN=OB0768 PE=3 SV=1
Length = 459
Score = 39.7 bits (91), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Query: 164 GFFDK-----VLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR 218
GF+ K + N D C +Q E N VL + + G+ YD SH G L+H+M+R
Sbjct: 148 GFYQKRSHRILQNQDTCHIQDEAINEVLPFTRQLMN--KYGIQAYDEKSHRGQLRHIMVR 205
Query: 219 TGSF 222
G +
Sbjct: 206 VGHY 209
>sp|Q97LN4|Y523_CLOAB Uncharacterized RNA methyltransferase CA_C0523 OS=Clostridium
acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 /
LMG 5710 / VKM B-1787) GN=CA_C0523 PE=3 SV=1
Length = 460
Score = 39.7 bits (91), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 168 KVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR----TGSFM 223
+++ +DKC +Q + AN ++ ++ + + + + Y+ +S G L+H+M+R TG M
Sbjct: 159 EIIEVDKCFIQDDSANEIILLIKRWIK--EFNIEGYNEYSGKGTLRHIMIRKAFKTGQIM 216
Query: 224 IC 225
+
Sbjct: 217 LV 218
>sp|Q72DK5|Y924_DESVH Uncharacterized RNA methyltransferase DVU_0924 OS=Desulfovibrio
vulgaris (strain Hildenborough / ATCC 29579 / NCIMB
8303) GN=DVU_0924 PE=3 SV=1
Length = 468
Score = 39.3 bits (90), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 74/202 (36%), Gaps = 67/202 (33%)
Query: 79 GQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAEMEF----- 133
G L++ ++LA GK VC+ G V+ DR LPG++ R+T + +AE E
Sbjct: 7 GMTLDVTVDALAPGGKAVCR--HEGRVIFVDRGLPGQQLHVRLTTVRKRFAEAECLAVVT 64
Query: 134 -----------SFGP-----------------KRWFPKESLPKRG--------------- 150
FG K F ++SL + G
Sbjct: 65 HTADECDPFCPHFGDCGGCTWQNLPYPAQLAWKERFVRDSLQRIGRIEAPNVLPTLPSPL 124
Query: 151 --------------DHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDP 196
D E LGL G + V+++ C LQ+ V+ +D R
Sbjct: 125 QQGFRNKMEFAFTTDDREMLHLGLRRRGGHE-VVDVTSCGLQTATTCRVVTTARDIARAS 183
Query: 197 QLGLSPYDVHSHSGFLKHLMLR 218
GL +D +H GF + L++R
Sbjct: 184 --GLPGWDDAAHRGFWRFLVVR 203
>sp|O31503|RLMCD_BACSU 23S rRNA (uracil-C(5))-methyltransferase RlmCD OS=Bacillus subtilis
(strain 168) GN=rlmCD PE=1 SV=1
Length = 459
Score = 38.9 bits (89), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 164 GFFDK----VLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR- 218
GF+ + ++++ CL+Q + + AV+D + G+ Y+ H G+L+H+M+R
Sbjct: 151 GFYQQRSHDIIDMSACLIQQSKNDEAVQAVKDICAN--YGVKAYNEERHKGWLRHIMVRY 208
Query: 219 ---TGSFMI 224
TG MI
Sbjct: 209 GVVTGEMMI 217
Score = 30.8 bits (68), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 33/66 (50%), Gaps = 10/66 (15%)
Query: 87 ESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTR-KKGSYAEMEFSFGPKRWFPKES 145
E L ++G GV KV GF + LP EK +VTR KKG F+FG +ES
Sbjct: 18 EDLTHEGAGVAKV--QGFPIFVPNALPEEKAQIKVTRVKKG------FAFGRLIELKEES 69
Query: 146 LPKRGD 151
P R D
Sbjct: 70 -PHRTD 74
>sp|Q8R5Z8|Y1713_FUSNN Uncharacterized RNA methyltransferase FN1713 OS=Fusobacterium
nucleatum subsp. nucleatum (strain ATCC 25586 / CIP
101130 / JCM 8532 / LMG 13131) GN=FN1713 PE=3 SV=1
Length = 464
Score = 38.9 bits (89), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 36/62 (58%), Gaps = 6/62 (9%)
Query: 164 GFFDK----VLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRT 219
GFF + V +D+ +L S+ N ++ +++ ++ S YD ++H G L+++M+RT
Sbjct: 156 GFFKRKSHEVFEVDENILNSKLGNKIIKELKEILNKNKI--SVYDENTHKGILRNIMIRT 213
Query: 220 GS 221
S
Sbjct: 214 NS 215
>sp|Q5HEM5|Y1957_STAAC Uncharacterized RNA methyltransferase SACOL1957 OS=Staphylococcus
aureus (strain COL) GN=SACOL1957 PE=3 SV=1
Length = 453
Score = 38.5 bits (88), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 137 PKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDP 196
P R+ K +P + +G + D +++++ CL+Q V+ V+ +D
Sbjct: 125 PWRYRNKSQIPVGKNEQNEVIMGFYRQRSHD-IIDMESCLIQDSQHQEVMNEVKSILKD- 182
Query: 197 QLGLSPYDVHSHSGFLKHLMLRTG 220
L +S Y G ++HL++RTG
Sbjct: 183 -LNVSIYQEQLKKGLMRHLVVRTG 205
>sp|Q99SY9|Y1897_STAAM Uncharacterized RNA methyltransferase SAV1897 OS=Staphylococcus
aureus (strain Mu50 / ATCC 700699) GN=SAV1897 PE=1 SV=1
Length = 453
Score = 38.1 bits (87), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 137 PKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDP 196
P R+ K +P + +G + D +++++ CL+Q V+ V+ +D
Sbjct: 125 PWRYRNKSQIPVGKNEQNEVIMGFYRQRSHD-IIDMESCLIQDSQHQEVMNEVKSILKD- 182
Query: 197 QLGLSPYDVHSHSGFLKHLMLRTG 220
L +S Y G ++HL++RTG
Sbjct: 183 -LNVSIYQEQLKKGLMRHLVVRTG 205
>sp|Q8NVT4|Y1838_STAAW Uncharacterized RNA methyltransferase MW1838 OS=Staphylococcus
aureus (strain MW2) GN=MW1838 PE=3 SV=1
Length = 453
Score = 38.1 bits (87), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 137 PKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDP 196
P R+ K +P + +G + D +++++ CL+Q V+ V+ +D
Sbjct: 125 PWRYRNKSQIPVGKNEQNEVIMGFYRQRSHD-IIDMESCLIQDSQHQEVMNEVKSILKD- 182
Query: 197 QLGLSPYDVHSHSGFLKHLMLRTG 220
L +S Y G ++HL++RTG
Sbjct: 183 -LNVSIYQEQLKKGLMRHLVVRTG 205
>sp|Q6G836|Y1819_STAAS Uncharacterized RNA methyltransferase SAS1819 OS=Staphylococcus
aureus (strain MSSA476) GN=SAS1819 PE=3 SV=1
Length = 453
Score = 38.1 bits (87), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 137 PKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDP 196
P R+ K +P + +G + D +++++ CL+Q V+ V+ +D
Sbjct: 125 PWRYRNKSQIPVGKNEQNEVIMGFYRQRSHD-IIDMESCLIQDSQHQEVMNEVKSILKD- 182
Query: 197 QLGLSPYDVHSHSGFLKHLMLRTG 220
L +S Y G ++HL++RTG
Sbjct: 183 -LNVSIYQEQLKKGLMRHLVVRTG 205
>sp|Q7A4Q9|Y1713_STAAN Uncharacterized RNA methyltransferase SA1713 OS=Staphylococcus
aureus (strain N315) GN=SA1713 PE=3 SV=1
Length = 453
Score = 38.1 bits (87), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 137 PKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDP 196
P R+ K +P + +G + D +++++ CL+Q V+ V+ +D
Sbjct: 125 PWRYRNKSQIPVGKNEQNEVIMGFYRQRSHD-IIDMESCLIQDSQHQEVMNEVKSILKD- 182
Query: 197 QLGLSPYDVHSHSGFLKHLMLRTG 220
L +S Y G ++HL++RTG
Sbjct: 183 -LNVSIYQEQLKKGLMRHLVVRTG 205
>sp|Q8F201|Y2977_LEPIN Uncharacterized RNA methyltransferase LA_2977 OS=Leptospira
interrogans serogroup Icterohaemorrhagiae serovar Lai
(strain 56601) GN=LA_2977 PE=3 SV=1
Length = 454
Score = 38.1 bits (87), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 158 LGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYW-RDPQLGLSPYDVHSHSGFLKHLM 216
+G G F +++++ CL+QS+ +N L ++ + P L PYD S SGFLK+
Sbjct: 137 VGQREAGSFRHIVDLETCLIQSKESNEELYRFRNLISKFPNL---PYDRKSDSGFLKYFT 193
Query: 217 LRTG 220
LR
Sbjct: 194 LRKA 197
>sp|Q72TD6|Y1085_LEPIC Uncharacterized RNA methyltransferase LIC_11085 OS=Leptospira
interrogans serogroup Icterohaemorrhagiae serovar
copenhageni (strain Fiocruz L1-130) GN=LIC_11085 PE=3
SV=1
Length = 454
Score = 38.1 bits (87), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 158 LGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYW-RDPQLGLSPYDVHSHSGFLKHLM 216
+G G F +++++ CL+QS+ +N L ++ + P L PYD S SGFLK+
Sbjct: 137 VGQREAGSFRHIVDLETCLIQSKESNEELYRFRNLISKFPNL---PYDRKSDSGFLKYFT 193
Query: 217 LRTG 220
LR
Sbjct: 194 LRKA 197
>sp|P54524|YQIG_BACSU Probable NADH-dependent flavin oxidoreductase YqiG OS=Bacillus
subtilis (strain 168) GN=yqiG PE=3 SV=1
Length = 372
Score = 38.1 bits (87), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 72/186 (38%), Gaps = 32/186 (17%)
Query: 38 PFLFVSSPTIT-KTQTRTRTHDAKPQFETFDSNNNDYFKPIRGQELELV---CESLAYKG 93
PF F S TI + TH A + T DY P R +E+ +V C ++ G
Sbjct: 11 PFTFKSGVTINNRIAVAPMTHYASNEDGTISEAELDYIIP-RSKEMGMVITACANVTPDG 69
Query: 94 K---GVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAEMEFSFG----PKRWFPKESL 146
K G + D D +PG K + + + +G+ A ++ G P P++ +
Sbjct: 70 KAFPGQPAIHD-------DSNIPGLKKLAQAIQAQGAKAVVQIHHGGIECPSELVPQQDV 122
Query: 147 PKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVH 206
D FD I + L + E N+V A + R + G ++H
Sbjct: 123 VGPSD-------------VFDNGKQIARALTEEEVENIVKAFGEATRRAIEAGFDGVEIH 169
Query: 207 SHSGFL 212
+G+L
Sbjct: 170 GANGYL 175
>sp|Q6GFG0|Y1988_STAAR Uncharacterized RNA methyltransferase SAR1988 OS=Staphylococcus
aureus (strain MRSA252) GN=SAR1988 PE=3 SV=1
Length = 453
Score = 37.0 bits (84), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 3/84 (3%)
Query: 137 PKRWFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDP 196
P R+ K +P + +G + D ++++ CL+Q V+ V+ +D
Sbjct: 125 PWRYRNKSQIPVGKNEQNEVIMGFYRQRSHD-IIDMGSCLIQDSQHQEVMNEVKSILKD- 182
Query: 197 QLGLSPYDVHSHSGFLKHLMLRTG 220
L +S Y G ++HL++RTG
Sbjct: 183 -LNVSIYQEQLKKGLMRHLVVRTG 205
>sp|Q73EJ5|Y363_BACC1 Uncharacterized RNA methyltransferase BCE_0363 OS=Bacillus cereus
(strain ATCC 10987) GN=BCE_0363 PE=3 SV=1
Length = 460
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 159 GLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR 218
G + G D ++N++ CL+Q+E + ++ V+ + G+S Y+ + G L+H+M R
Sbjct: 151 GFYRQGTHD-IINMESCLIQAEENDTLIQEVKRICE--KHGISAYNEERNKGTLRHVMAR 207
Query: 219 TGS 221
G
Sbjct: 208 YGQ 210
>sp|E1V4F9|RLMD_HALED 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD OS=Halomonas
elongata (strain ATCC 33173 / DSM 2581 / NBRC 15536 /
NCIMB 2198 / 1H9) GN=rlmD PE=3 SV=1
Length = 483
Score = 36.6 bits (83), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 83 ELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAEMEFS 134
ELV + LA+ G+GV + D G V + LPGE+ V R++ + E S
Sbjct: 39 ELVIQGLAHDGRGVARDVD-GKTVFVEGALPGERVQASVHRRRKRFDEAHVS 89
>sp|Q81ZD6|Y333_BACAN Uncharacterized RNA methyltransferase BA_0333/GBAA_0333/BAS0318
OS=Bacillus anthracis GN=BA_0333 PE=3 SV=1
Length = 458
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 159 GLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR 218
G + G D ++N++ CL+Q+E + ++ V+ + G+S Y+ + G L+H+M R
Sbjct: 151 GFYRQGTHD-IINMESCLIQAEENDTLIQEVKRICE--KHGISAYNEERNKGTLRHVMAR 207
Query: 219 TGS 221
G
Sbjct: 208 YGQ 210
>sp|Q8U1N4|ATRMA_PYRFU tRNA (uracil(54)-C(5))-methyltransferase OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1)
GN=PF1172 PE=3 SV=1
Length = 411
Score = 35.8 bits (81), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/66 (22%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 157 ALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLM 216
A+G G + V+++++C + + + + +++Y + ++ S + + SGFL++++
Sbjct: 120 AIGFREKGKWWSVVDVEECPVFGKTSKKAIERLREYIEEEKV--STWKIREDSGFLRYMV 177
Query: 217 LRTGSF 222
LR G F
Sbjct: 178 LREGKF 183
>sp|Q814A6|Y364_BACCR Uncharacterized RNA methyltransferase BC_0364 OS=Bacillus cereus
(strain ATCC 14579 / DSM 31) GN=BC_0364 PE=3 SV=1
Length = 458
Score = 35.8 bits (81), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 35/63 (55%), Gaps = 3/63 (4%)
Query: 159 GLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLR 218
G + G D ++N++ CL+Q+E + ++ V+ + G++ Y+ + G L+H+M R
Sbjct: 151 GFYRQGTHD-IINMESCLIQAEENDTLIQEVKRICE--KHGITAYNEERNKGTLRHVMAR 207
Query: 219 TGS 221
G
Sbjct: 208 YGQ 210
>sp|Q97R12|Y1029_STRPN Uncharacterized RNA methyltransferase SP_1029 OS=Streptococcus
pneumoniae serotype 4 (strain ATCC BAA-334 / TIGR4)
GN=SP_1029 PE=3 SV=1
Length = 543
Score = 35.4 bits (80), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 71/156 (45%), Gaps = 25/156 (16%)
Query: 76 PIRGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAEMEF-- 133
P R Q+L+L AY G+ AD G + +++ K + K A++E
Sbjct: 65 PHRNQDLDL-----AYLRSGI---ADLGHLSYPEQLKFKTKQVKDSLYKIAGIADVEVAE 116
Query: 134 SFG---PKRWFPKESLPKRGDHIENYALGLHAPGFFDK----VLNIDKCLLQSEPANLVL 186
+ G P ++ K +P R + G+ GFF K ++ ++ +Q + V+
Sbjct: 117 TLGMEHPVKYRNKAQVPVRRVN------GVLETGFFRKNSHNLMPLEDFFIQDPVIDQVV 170
Query: 187 AAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGSF 222
A++D R + L PYD SG +++L++R G +
Sbjct: 171 VALRDLLR--RFDLKPYDEKEQSGLIRNLVVRRGHY 204
>sp|Q8DPY7|Y932_STRR6 Uncharacterized RNA methyltransferase spr0932 OS=Streptococcus
pneumoniae (strain ATCC BAA-255 / R6) GN=spr0932 PE=3
SV=1
Length = 543
Score = 35.4 bits (80), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 71/156 (45%), Gaps = 25/156 (16%)
Query: 76 PIRGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAEMEF-- 133
P R Q+L+L AY G+ AD G + +++ K + K A++E
Sbjct: 65 PHRNQDLDL-----AYLRSGI---ADLGHLSYPEQLKFKTKQVKDSLYKIAGIADVEVAE 116
Query: 134 SFG---PKRWFPKESLPKRGDHIENYALGLHAPGFFDK----VLNIDKCLLQSEPANLVL 186
+ G P ++ K +P R + G+ GFF K ++ ++ +Q + V+
Sbjct: 117 TLGMEHPVKYRNKAQVPVRRVN------GVLETGFFRKNSHNLMPLEDFFIQDPVIDQVV 170
Query: 187 AAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGSF 222
A++D R + L PYD SG +++L++R G +
Sbjct: 171 VALRDLLR--RFDLKPYDEKEQSGLIRNLVVRRGHY 204
>sp|B5EPA4|RLMD_ACIF5 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
OS=Acidithiobacillus ferrooxidans (strain ATCC 53993)
GN=rlmD PE=3 SV=1
Length = 440
Score = 35.4 bits (80), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 75 KPIRGQELELV-CESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAEMEF 133
KPI + E V ESL +G+G+ +V G V+ D LPGE+ R T+ S+ E
Sbjct: 5 KPIHNAQPEQVFIESLDTEGRGIARV--EGKVLFVDGALPGERVWARRTQNHKSFDRAEL 62
>sp|B7J921|RLMD_ACIF2 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 /
DSM 14882 / NCIB 8455) GN=rlmD PE=3 SV=1
Length = 440
Score = 35.4 bits (80), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 3/60 (5%)
Query: 75 KPIRGQELELV-CESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAEMEF 133
KPI + E V ESL +G+G+ +V G V+ D LPGE+ R T+ S+ E
Sbjct: 5 KPIHNAQPEQVFIESLDTEGRGIARV--EGKVLFVDGALPGERVWARRTQNHKSFDRAEL 62
>sp|Q8F9A3|Y292_LEPIN Uncharacterized RNA methyltransferase LA_0292 OS=Leptospira
interrogans serogroup Icterohaemorrhagiae serovar Lai
(strain 56601) GN=LA_0292 PE=3 SV=1
Length = 393
Score = 35.0 bits (79), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 157 ALGLH-APGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHL 215
LGLH F +++ +C +Q E V AA++ + R+ L PY SG L+H+
Sbjct: 80 TLGLHNKENTF--IIDQKECRIQDEDLTTVAAAIRHWARNE--NLEPYHEKKGSGLLRHI 135
Query: 216 MLRTGS 221
+LR +
Sbjct: 136 VLRKAN 141
>sp|Q72VP7|Y249_LEPIC Uncharacterized RNA methyltransferase LIC_10249 OS=Leptospira
interrogans serogroup Icterohaemorrhagiae serovar
copenhageni (strain Fiocruz L1-130) GN=LIC_10249 PE=3
SV=1
Length = 393
Score = 35.0 bits (79), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Query: 157 ALGLH-APGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHL 215
LGLH F +++ +C +Q E V AA++ + R+ L PY SG L+H+
Sbjct: 80 TLGLHNKENTF--IIDQKECRIQDEDLTTVAAAIRHWARNE--NLEPYHEKKGSGLLRHI 135
Query: 216 MLRTGS 221
+LR +
Sbjct: 136 VLRKAN 141
>sp|Q9UZR7|ATRMA_PYRAB tRNA (uracil(54)-C(5))-methyltransferase OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=PYRAB10780 PE=1 SV=1
Length = 405
Score = 35.0 bits (79), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/66 (21%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 157 ALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLM 216
+G G + K+++ID+C + + + + ++++ + ++ S +++ GFL++++
Sbjct: 119 GIGFRERGKWWKIVDIDECPVFGKTSREAIERLKEFIEEEKI--SVWNIKKDEGFLRYMV 176
Query: 217 LRTGSF 222
LR G F
Sbjct: 177 LREGKF 182
>sp|P73374|Y1967_SYNY3 Uncharacterized RNA methyltransferase sll1967 OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=sll1967 PE=3 SV=1
Length = 463
Score = 35.0 bits (79), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 168 KVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+++NI++C +Q + NL+L V+ + G S YD G L+HL LR G
Sbjct: 164 RLVNINQCPVQDDRLNLLLTEVKKDIENR--GWSIYDEEKKQGKLRHLSLRIGQ 215
>sp|Q7NGN4|Y3134_GLOVI Uncharacterized RNA methyltransferase gll3134 OS=Gloeobacter
violaceus (strain PCC 7421) GN=gll3134 PE=3 SV=1
Length = 457
Score = 34.7 bits (78), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 168 KVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221
+++ +D C +Q + +LAA ++ R G S YD H G L+HL LR G
Sbjct: 163 RIVPLDACPVQDSRLDPLLAAARELIRTQ--GWSIYDEKHHRGALRHLGLRIGE 214
>sp|Q88XP4|Y1151_LACPL Uncharacterized RNA methyltransferase lp_1151 OS=Lactobacillus
plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1)
GN=lp_1151 PE=3 SV=1
Length = 457
Score = 34.7 bits (78), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 6/70 (8%)
Query: 78 RGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYA----EMEF 133
+G+ L++ L Y+G GV KV + + + + LP EK +VT+ ++A E
Sbjct: 9 KGEVLDVTIMDLTYQGMGVAKVDN--YPIFIENALPEEKITVKVTKTTKNFAFGDVEKIN 66
Query: 134 SFGPKRWFPK 143
P R PK
Sbjct: 67 QVSPHRVNPK 76
>sp|Q74N58|Y053_NANEQ Uncharacterized RNA methyltransferase NEQ053 OS=Nanoarchaeum
equitans (strain Kin4-M) GN=NEQ053 PE=3 SV=1
Length = 447
Score = 34.3 bits (77), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
Query: 158 LGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLML 217
+ L PG + + I +C + S+ A +++ + + + +D H+GFL++L++
Sbjct: 145 VSLKEPGKWYGYIPIKECKMLSKEAEIIINEFNKFIE--KYKIPSWDTVKHTGFLRYLVI 202
Query: 218 RTGSF 222
R G F
Sbjct: 203 REGKF 207
>sp|Q830R6|Y2706_ENTFA Uncharacterized RNA methyltransferase EF_2706 OS=Enterococcus
faecalis (strain ATCC 700802 / V583) GN=EF_2706 PE=3
SV=1
Length = 456
Score = 33.9 bits (76), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 172 IDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTG 220
ID CL+Q V+ + D D QL + YD +SG + LM+R G
Sbjct: 162 IDNCLVQQPATTKVMNTLVDLLNDFQLPI--YDERKNSGIFRTLMVRVG 208
>sp|Q6M9M7|Y1998_PARUW Uncharacterized RNA methyltransferase pc1998 OS=Protochlamydia
amoebophila (strain UWE25) GN=pc1998 PE=3 SV=1
Length = 383
Score = 33.1 bits (74), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 140 WFPKESLPKRGDHIENYALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLG 199
W + L RG +N +GL G + LNI CL+ N + +Q++ QL
Sbjct: 55 WRCRAKLAVRGTK-QNPIIGLFKKGSHE-ALNIPFCLVHHPRINQAVTMIQNWMERHQL- 111
Query: 200 LSPYDVHSHSGFLKHLML 217
+PY HS +G L++L
Sbjct: 112 -NPYQEHSQAGDLRYLQF 128
>sp|O58864|ATRMA_PYRHO tRNA (uracil(54)-C(5))-methyltransferase OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=PH1137 PE=3 SV=1
Length = 407
Score = 33.1 bits (74), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/66 (21%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 157 ALGLHAPGFFDKVLNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLM 216
+G G + K+++I +C + + + + ++++ + ++ S ++V GFL++++
Sbjct: 119 GIGFRERGKWWKIVDIQECPVFGKTSRKAIERLREFIEEERI--SVWNVKKDEGFLRYMV 176
Query: 217 LRTGSF 222
LR G F
Sbjct: 177 LREGKF 182
>sp|Q606W5|RLMD_METCA 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
OS=Methylococcus capsulatus (strain ATCC 33009 / NCIMB
11132 / Bath) GN=rlmD PE=3 SV=1
Length = 443
Score = 32.7 bits (73), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 75 KPIRGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYA 129
KP+ + + ES A+ GKG+ V G VV D LPGE T K YA
Sbjct: 8 KPLPAEPIAAHIESFAHDGKGIAHV--DGRVVFVDGALPGEDVTFVYTEIKRDYA 60
>sp|Q3JCY2|RLMD_NITOC 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB
11848) GN=rlmD PE=3 SV=1
Length = 447
Score = 32.3 bits (72), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 75 KPIRGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAE 130
KP+ + + E+L ++G+G+ VA G V D LPGE R++G + E
Sbjct: 8 KPLSQEPQKASIEALTHEGRGIAHVA--GKTVFIDGALPGETVWFHYLRRRGKFDE 61
>sp|Q7NWP9|RLMD_CHRVO 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
OS=Chromobacterium violaceum (strain ATCC 12472 / DSM
30191 / JCM 1249 / NBRC 12614 / NCIMB 9131 / NCTC 9757)
GN=rlmD PE=3 SV=1
Length = 514
Score = 32.3 bits (72), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 80 QELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAEMEFSFGPKR 139
Q + LV ESL ++G+GV V G + D LP EK I RKK SY + S K
Sbjct: 5 QTIALV-ESLDHEGRGVAHV--DGKTLFIDGALPYEKVIYSSYRKKPSYENAQTSAVLKE 61
Query: 140 WF 141
F
Sbjct: 62 SF 63
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,603,884
Number of Sequences: 539616
Number of extensions: 3790147
Number of successful extensions: 6803
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 6770
Number of HSP's gapped (non-prelim): 65
length of query: 229
length of database: 191,569,459
effective HSP length: 113
effective length of query: 116
effective length of database: 130,592,851
effective search space: 15148770716
effective search space used: 15148770716
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)