Query 038639
Match_columns 229
No_of_seqs 118 out of 1132
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 22:56:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038639.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038639hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1uwv_A 23S rRNA (uracil-5-)-me 99.9 9.9E-26 3.4E-30 210.2 12.8 142 66-223 4-200 (433)
2 2jjq_A Uncharacterized RNA met 99.9 4E-26 1.4E-30 213.5 8.9 137 75-221 14-201 (425)
3 1yvc_A MRR5; structure, autost 99.5 7.9E-14 2.7E-18 100.1 9.1 54 75-130 12-65 (70)
4 1yez_A MM1357; MAR30, autostru 99.5 7.8E-14 2.7E-18 99.3 7.9 55 74-130 9-63 (68)
5 3bt7_A TRNA (uracil-5-)-methyl 98.2 3.4E-07 1.2E-11 83.1 2.9 64 131-195 10-100 (369)
6 2as0_A Hypothetical protein PH 97.0 0.00041 1.4E-08 63.1 3.6 61 156-219 49-116 (396)
7 3c0k_A UPF0064 protein YCCW; P 96.9 0.0004 1.4E-08 63.2 2.9 64 153-219 46-119 (396)
8 2b78_A Hypothetical protein SM 96.0 0.0031 1.1E-07 57.4 3.1 62 156-219 46-114 (385)
9 1wxx_A TT1595, hypothetical pr 95.5 0.0037 1.3E-07 56.5 1.3 62 156-219 44-112 (382)
10 2qm3_A Predicted methyltransfe 70.8 0.51 1.7E-05 42.2 -1.5 40 170-215 13-52 (373)
11 2k52_A Uncharacterized protein 64.8 31 0.0011 23.7 7.7 50 75-126 2-61 (80)
12 1wfq_A UNR protein; beta-barre 63.7 38 0.0013 24.4 7.8 48 78-126 15-71 (89)
13 2id0_A Exoribonuclease 2; RNAs 63.2 10 0.00034 36.8 5.8 42 82-125 22-68 (644)
14 2khi_A 30S ribosomal protein S 53.7 39 0.0013 25.0 6.5 50 75-126 27-91 (115)
15 1a62_A RHO; transcription term 48.6 34 0.0012 26.4 5.6 40 87-126 55-106 (130)
16 2khj_A 30S ribosomal protein S 48.0 41 0.0014 24.5 5.8 49 76-126 29-91 (109)
17 2yty_A Cold shock domain-conta 47.9 37 0.0013 24.3 5.4 48 79-127 16-72 (88)
18 2k4k_A GSP13, general stress p 43.3 85 0.0029 23.7 7.2 49 76-126 5-67 (130)
19 2f4l_A Acetamidase, putative; 43.2 20 0.00067 31.8 3.8 57 72-130 31-93 (297)
20 2ii1_A Acetamidase; 10172637, 41.3 20 0.0007 31.7 3.7 26 105-130 63-89 (301)
21 2ytx_A Cold shock domain-conta 39.1 70 0.0024 23.3 5.8 47 80-127 17-72 (97)
22 3mjj_A Predicted acetamidase/f 39.0 23 0.0008 31.3 3.7 21 105-125 65-85 (301)
23 2l3b_A Conserved protein found 38.3 48 0.0016 25.9 4.9 44 77-122 25-86 (130)
24 2vnu_D Exosome complex exonucl 36.8 8.3 0.00028 38.2 0.4 47 77-124 28-82 (760)
25 3cam_A Cold-shock domain famil 33.9 93 0.0032 20.9 5.4 45 83-127 3-58 (67)
26 3b9t_A Twin-arginine transloca 33.3 33 0.0011 32.4 3.8 22 105-126 166-187 (484)
27 2l7q_A Conserved protein found 33.2 47 0.0016 25.7 4.1 44 77-122 24-85 (124)
28 2wkn_A Formamidase, gamma-lact 32.6 35 0.0012 31.5 3.8 22 105-126 75-96 (409)
29 2rf4_A DNA-directed RNA polyme 31.1 1.3E+02 0.0045 24.8 6.9 37 75-113 126-163 (214)
30 2k5n_A Putative cold-shock pro 29.2 1.4E+02 0.0048 20.5 6.7 45 82-127 3-56 (74)
31 1wi5_A RRP5 protein homolog; S 28.2 88 0.003 23.0 4.9 51 75-126 18-83 (119)
32 2qgq_A Protein TM_1862; alpha- 26.9 1.2E+02 0.0042 25.7 6.2 50 78-129 236-291 (304)
33 2z0s_A Probable exosome comple 26.8 1.4E+02 0.0049 24.8 6.5 52 73-126 61-130 (235)
34 1h95_A CSD, Y-box binding prot 26.7 1.6E+02 0.0055 20.3 6.1 47 81-127 8-69 (79)
35 1g6p_A Cold shock protein TMCS 24.4 1E+02 0.0034 20.6 4.2 43 84-127 3-56 (66)
36 1c9o_A CSPB, cold-shock protei 24.1 1.6E+02 0.0055 19.5 6.4 44 83-127 3-57 (66)
37 2je6_I RRP4, exosome complex R 21.4 2.4E+02 0.0081 23.8 6.9 52 73-126 69-137 (251)
38 3aqq_A Calcium-regulated heat 20.9 2.7E+02 0.0092 21.8 6.6 45 79-123 60-113 (147)
39 2bh8_A 1B11; transcription, mo 20.6 2.4E+02 0.0082 20.2 6.9 49 78-126 13-74 (101)
No 1
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*
Probab=99.93 E-value=9.9e-26 Score=210.23 Aligned_cols=142 Identities=19% Similarity=0.268 Sum_probs=114.1
Q ss_pred cccCCCCCCCCCCCcEEEEEEeeeCCCCcEEEEEcCCCcEEEecCCCCCcEEEEEEEeecCCeee---------------
Q 038639 66 FDSNNNDYFKPIRGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAE--------------- 130 (229)
Q Consensus 66 ~~~~~~~~~~~k~~~~i~l~I~~l~~~G~GVar~~~~G~vVFVpgaLPGE~V~vrI~k~kk~y~~--------------- 130 (229)
|++++++. + +++.++++|++++++|+|||+++ |++|||||+||||+|+++|++.+++|++
T Consensus 4 ~~~~~~~~--~-~~~~~~~~i~~l~~~G~Gv~~~~--g~~vfV~~alpGe~v~~~i~~~~~~~~~~~~~~i~~~S~~Rv~ 78 (433)
T 1uwv_A 4 FYSAKRRT--T-TRQIITVSVNDLDSFGQGVARHN--GKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERET 78 (433)
T ss_dssp --------------CCEEEEEEEECTTSEEEEEET--TEEEEEETCCTTCEEEEEEEEECSSEEEEEEEEECCCCTTBCC
T ss_pred ccCCCCcC--C-CCCEEEEEEEEecCCCceEEEeC--CEEEEcCCCCCCCEEEEEEEeecCCceeEEeccccCCCCCcCC
Confidence 44554333 2 34678999999999999999996 9999999999999999999999999987
Q ss_pred --------------eeecccccccchhhccCcc----------C-------------C---CCCceeEEEeccCCCCceE
Q 038639 131 --------------MEFSFGPKRWFPKESLPKR----------G-------------D---HIENYALGLHAPGFFDKVL 170 (229)
Q Consensus 131 --------------qhlsY~~QL~~K~~~l~~~----------~-------------~---~~g~~~lGf~~rgS~~~IV 170 (229)
||++|+.|++||++.|.+. + . .+++..+|||+++|| ++|
T Consensus 79 p~C~~~~~CGGC~~qh~~y~~Ql~~K~~~v~~~l~~~~~~~~~~~~~~YRnr~~~~~~~~~~~~~~~~Gf~~~~s~-~iv 157 (433)
T 1uwv_A 79 PRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHDVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSS-DIV 157 (433)
T ss_dssp CSCTTTTTBTTCSCTTBCHHHHHHHHHHHHHHHHTSCCCEEECCCSSSCBSEEEEEEEEETTTTEEEEEEEBTTSS-CEE
T ss_pred CCCCCCCCCCCccccCCCHHHHHHHHHHHHHHHHHHhhcccccCCccccCceEEEeeeEccCCCcEEEEEEcCCCC-cEE
Confidence 8999999999998775431 0 0 134567899999997 899
Q ss_pred eCCCCcCCChhHHHHHHHHHHHHhcCCCCCCCCcCCCCccceeEEEEEeecCc
Q 038639 171 NIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGSFM 223 (229)
Q Consensus 171 die~CpL~~~~in~il~~lr~~l~~~~~~l~~Yd~~~~~G~LRhLvVR~s~~~ 223 (229)
++++|||++|.+++++..++++++. .++ .|.++|++||.+..+
T Consensus 158 ~i~~C~i~~~~~~~~~~~l~~~~~~--~~~--------~~~~~~i~~~~~~~~ 200 (433)
T 1uwv_A 158 DVKQCPILAPQLEALLPKVRACLGS--LQA--------MRHLGHVELVQATSG 200 (433)
T ss_dssp ECSCCTTBCHHHHHHHHHHHHHHTT--CGG--------GGGEEEEEEEEETTE
T ss_pred ECccCcCCCHHHHHHHHHHHHHHHh--cCC--------CCCccEEEEEEeCCC
Confidence 9999999999999999999999985 332 367999999987543
No 2
>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*
Probab=99.93 E-value=4e-26 Score=213.52 Aligned_cols=137 Identities=20% Similarity=0.386 Sum_probs=114.8
Q ss_pred CCCCCcEEEEEEeeeCCCCcEEEEEcCCCcEEEecCCCCCcEEEEEEEeecCCeee------------------------
Q 038639 75 KPIRGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAE------------------------ 130 (229)
Q Consensus 75 ~~k~~~~i~l~I~~l~~~G~GVar~~~~G~vVFVpgaLPGE~V~vrI~k~kk~y~~------------------------ 130 (229)
.+..|+.++++|++++++|+|||+ +|||||+||||+|+++|++.|++|++
T Consensus 14 ~~~~~~~~~~~I~~l~~~G~Gv~~------~vfV~~alPGe~v~~~i~~~k~~~~~a~~~~v~~~S~~Rv~p~C~~~~~C 87 (425)
T 2jjq_A 14 LVPRGSHMRGVIRKLNDDGFGVLK------GILVPFSAPGDEIIVERVERVKKRRVASQWKLVRSSPLRVGPRCKAFGKC 87 (425)
T ss_dssp -------CEEECCEECTTSCEEET------TEEETTCCTTCEEEEEEEEESSSSEEEEEEEEEECCTTBCC---------
T ss_pred ccCCCCEEEEEEEEeccCCeEEEE------EEEeCCCCCCCEEEEEEEEecCCceEEEEcccCCCCccccCCCCCCcCCC
Confidence 345678889999999999999996 79999999999999999999999987
Q ss_pred -----eeecccccccchhhccCccC-------------CC--------CCceeEEEeccCC-CCceEeCCCCcCCChhHH
Q 038639 131 -----MEFSFGPKRWFPKESLPKRG-------------DH--------IENYALGLHAPGF-FDKVLNIDKCLLQSEPAN 183 (229)
Q Consensus 131 -----qhlsY~~QL~~K~~~l~~~~-------------~~--------~g~~~lGf~~rgS-~~~IVdie~CpL~~~~in 183 (229)
||++|+.|++||++.+++.+ .+ .. ..+|||+++| | ++|++++|||++|.++
T Consensus 88 GGC~lqh~~y~~Ql~~K~~~l~r~~~~~~~~~~s~~~~~YRnk~~~~v~~-g~~Gf~~~~s~~-~iv~i~~C~i~~~~~~ 165 (425)
T 2jjq_A 88 GGCTLQHLNYDYQLEFKRKKLKRILGFEVEVVPSPKIFGHRNRIDLAITK-DGIGFRERGKWW-KIVDIDECPVFGKTSR 165 (425)
T ss_dssp --CTTTTBCHHHHHHHHHHHHHHHHSSCCEEECCSCSSSCBCEEEEEEET-TEEEEEC--CTT-SEEECSCBTTTBHHHH
T ss_pred CCccCcCCCHHHHHHHHHHHHHHccCCCCceecCCCcCCccceEEEEecC-CCeEEeeCCCCC-cEEECcCCccCCHHHH
Confidence 89999999999987654320 01 11 1289999999 7 8999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCcCCCCccceeEEEEEeec
Q 038639 184 LVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHLMLRTGS 221 (229)
Q Consensus 184 ~il~~lr~~l~~~~~~l~~Yd~~~~~G~LRhLvVR~s~ 221 (229)
+++..++++++. .++++||..++.|+|||++||.+.
T Consensus 166 ~~~~~l~~~~~~--~~~~~y~~~~~~g~lr~~~vr~~~ 201 (425)
T 2jjq_A 166 EAIERLKEFIEE--EKISVWNIKKDEGFLRYMVLREGK 201 (425)
T ss_dssp HHHHHHHHHHHH--HTCCBBBTTTTBCSEEEEEEEECT
T ss_pred HHHHHHHHHHHH--cCCCccccccCCCcceEEEEEEcc
Confidence 999999999996 899999999999999999999886
No 3
>1yvc_A MRR5; structure, autostructure, autoassign, northeast structural genomics, autoqf, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: b.40.4.12
Probab=99.50 E-value=7.9e-14 Score=100.05 Aligned_cols=54 Identities=28% Similarity=0.423 Sum_probs=50.5
Q ss_pred CCCCCcEEEEEEeeeCCCCcEEEEEcCCCcEEEecCCCCCcEEEEEEEeecCCeee
Q 038639 75 KPIRGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAE 130 (229)
Q Consensus 75 ~~k~~~~i~l~I~~l~~~G~GVar~~~~G~vVFVpgaLPGE~V~vrI~k~kk~y~~ 130 (229)
.+++++.++++|++++++|.|||+.+ |+++|||++||||+|+++|++.+++|++
T Consensus 12 ~~~~~~~~~v~I~~l~~~G~Gva~~~--g~~vfV~~alPGE~V~v~i~k~kk~~~~ 65 (70)
T 1yvc_A 12 PVEAGKEYEVTIEDMGKGGDGIARID--GFVVFVPNAEKGSVINVKVTAVKEKFAF 65 (70)
T ss_dssp SSCTTCEEEEECCEECTTSCEEEEET--TEEEEETTCCTTCEEEEEEEEECSSCEE
T ss_pred cccCCCEEEEEEEEcCCCccEEEEEC--CEEEEccCCCCCCEEEEEEEEeeCCeEE
Confidence 45789999999999999999999996 8999999999999999999999999875
No 4
>1yez_A MM1357; MAR30, autostructure, northeast structural genomics, PSI, PR structure initiative, northeast structural genomics consort NESG; NMR {Methanosarcina mazei} SCOP: b.40.4.12
Probab=99.49 E-value=7.8e-14 Score=99.33 Aligned_cols=55 Identities=20% Similarity=0.393 Sum_probs=51.0
Q ss_pred CCCCCCcEEEEEEeeeCCCCcEEEEEcCCCcEEEecCCCCCcEEEEEEEeecCCeee
Q 038639 74 FKPIRGQELELVCESLAYKGKGVCKVADTGFVVLCDRVLPGEKFIGRVTRKKGSYAE 130 (229)
Q Consensus 74 ~~~k~~~~i~l~I~~l~~~G~GVar~~~~G~vVFVpgaLPGE~V~vrI~k~kk~y~~ 130 (229)
..+++++.++++|++++++|.|||+++ |++|||||+||||+|+++|++.+++|++
T Consensus 9 ~~~~~~~~~~~~I~~l~~~G~Gva~~~--g~~vfV~~alPGE~V~v~i~k~kk~~~~ 63 (68)
T 1yez_A 9 VPVEEGEVYDVTIQDIARQGDGIARIE--GFVIFVPGTKVGDEVRIKVERVLPKFAF 63 (68)
T ss_dssp CSCCTTEEEEEECCEEETTTEEEEEET--TEEEEEESCCTTCEEEEEEEEECSSCEE
T ss_pred CccCCCCEEEEEEEEcCCCccEEEEEC--CEEEECcCCCCCCEEEEEEEEecCCEEE
Confidence 346789999999999999999999996 8999999999999999999999999875
No 5
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=98.25 E-value=3.4e-07 Score=83.10 Aligned_cols=64 Identities=11% Similarity=-0.031 Sum_probs=53.6
Q ss_pred eeecccccccchhhccCcc----C------------C-----------CCCceeEEEeccCCCCceEeCCCCcCCChhHH
Q 038639 131 MEFSFGPKRWFPKESLPKR----G------------D-----------HIENYALGLHAPGFFDKVLNIDKCLLQSEPAN 183 (229)
Q Consensus 131 qhlsY~~QL~~K~~~l~~~----~------------~-----------~~g~~~lGf~~rgS~~~IVdie~CpL~~~~in 183 (229)
||++|+.|++||++.|.+. + . .++.+.+|||+++|| .+|++++|++++|.++
T Consensus 10 ~~~~y~~Ql~~K~~~v~~~l~r~~~~~~~~~~~~~~~yRnr~~~~v~~~~~~~~~G~~~~~s~-~iv~i~~C~i~~~~i~ 88 (369)
T 3bt7_A 10 PTEQYEAQLAEKVVRLQSMMAPFSDLVPEVFRSPVSHYRMRAEFRIWHDGDDLYHIIFDQQTK-SRIRVDSFPAASELIN 88 (369)
T ss_dssp CGGGHHHHHHHHHHHHHHHHTTTCCCCCEEECCCSSSCBSEEEEEEEEETTEEEEEEECTTTC-CEEECSCCTTBCHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCCCccCCCccccceEEEEEEEEcCCcEEEEEEECCCC-CEEeCcCCccCCHHHH
Confidence 7999999999998876542 1 0 134567899999998 8999999999999999
Q ss_pred HHHHHHHHHHhc
Q 038639 184 LVLAAVQDYWRD 195 (229)
Q Consensus 184 ~il~~lr~~l~~ 195 (229)
+++..++++++.
T Consensus 89 ~~l~~l~~~~~~ 100 (369)
T 3bt7_A 89 QLMTAMIAGVRN 100 (369)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 999999998863
No 6
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=96.97 E-value=0.00041 Score=63.07 Aligned_cols=61 Identities=11% Similarity=0.263 Sum_probs=55.4
Q ss_pred eeEEEeccCC---CCceEeCC-CCcCCChhHHHHHHHHHHHHhcCCC--CCCCCcCCCCcc-ceeEEEEEe
Q 038639 156 YALGLHAPGF---FDKVLNID-KCLLQSEPANLVLAAVQDYWRDPQL--GLSPYDVHSHSG-FLKHLMLRT 219 (229)
Q Consensus 156 ~~lGf~~rgS---~~~IVdie-~CpL~~~~in~il~~lr~~l~~~~~--~l~~Yd~~~~~G-~LRhLvVR~ 219 (229)
+.+|||.++| + +||+++ +|+|.++.+++.+..++++.+. . +...|+...+.| +|++|+|+.
T Consensus 49 l~~G~~~~~s~~~~-ri~~~~~~~~i~~~~~~~~l~~~~~~~~~--~~~~~~~yrl~~~~gd~l~gl~vd~ 116 (396)
T 2as0_A 49 LGKGFANPNSNIMV-RIVTKDKDVEINKDLFKRRIKKANEYRKK--VLKYTNVYRMVYGEADYLPGLIVDR 116 (396)
T ss_dssp EEEEEECTTSSEEE-EEEESCTTCCCSHHHHHHHHHHHHHHHHH--TSCCCSEEEEEEGGGGTCTTEEEEE
T ss_pred EEEEEECCCChHHe-ehhccCCCCCCCHHHHHHHHHHHHHHHHH--HhcCCCeEEEEecCCCCCCcEEEEE
Confidence 6789999999 6 799999 9999999999999999999986 5 788999999988 899999985
No 7
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=96.89 E-value=0.0004 Score=63.18 Aligned_cols=64 Identities=19% Similarity=0.173 Sum_probs=56.1
Q ss_pred CCc-eeEEEeccCC---CCceEeCC-CCcCCChhHHHHHHHHHHHHhcCCC----CCCCCcCCCCcc-ceeEEEEEe
Q 038639 153 IEN-YALGLHAPGF---FDKVLNID-KCLLQSEPANLVLAAVQDYWRDPQL----GLSPYDVHSHSG-FLKHLMLRT 219 (229)
Q Consensus 153 ~g~-~~lGf~~rgS---~~~IVdie-~CpL~~~~in~il~~lr~~l~~~~~----~l~~Yd~~~~~G-~LRhLvVR~ 219 (229)
+++ +.+|||.++| + ++|+++ +|+|.++.+++.+..++++.+. . ++..|+...+.| +|++|+|+.
T Consensus 46 ~g~~l~~G~~~~~s~~~~-ri~~~~~~~~i~~~~~~~~l~~a~~~~~~--~~~~~~~~~yrl~~~egd~l~gl~vd~ 119 (396)
T 3c0k_A 46 QGKWLARGAYSPASQIRA-RVWTFDPSESIDIAFFSRRLQQAQKWRDW--LAQKDGLDSYRLIAGESDGLPGITIDR 119 (396)
T ss_dssp TCCEEEEEEECTTSSEEE-EEEESCTTCCCSHHHHHHHHHHHHHHHHH--HHHHHTCSEEEEEEGGGGTCTTEEEEE
T ss_pred CCCEEEEEEECCCCCEEE-EEEECCCCCCCCHHHHHHHHHHHHHHHHH--HHhcCCCceEEEEecCCCCCCceEEEE
Confidence 344 6789999999 6 799999 9999999999999998888875 4 788999999999 899999985
No 8
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=96.04 E-value=0.0031 Score=57.41 Aligned_cols=62 Identities=6% Similarity=0.019 Sum_probs=50.4
Q ss_pred eeEEEeccCCC--CceEeCCCCcCCChhH----HHHHHHHHHHHhcCCCCCCCCcCCCCcc-ceeEEEEEe
Q 038639 156 YALGLHAPGFF--DKVLNIDKCLLQSEPA----NLVLAAVQDYWRDPQLGLSPYDVHSHSG-FLKHLMLRT 219 (229)
Q Consensus 156 ~~lGf~~rgS~--~~IVdie~CpL~~~~i----n~il~~lr~~l~~~~~~l~~Yd~~~~~G-~LRhLvVR~ 219 (229)
+.+|||.++|+ ++|++.++|+|.++.+ .+++...++++.+ .+++.|+...+.| +|++|+||.
T Consensus 46 l~~g~~~~~s~i~~ri~~~~~~~i~~~~~~~~~~~a~~~r~~~~~~--~~~~~yr~~~~egd~l~gl~vd~ 114 (385)
T 2b78_A 46 LGTAYLSKQNKGVGWLISPKKVSLNVTYFIKLFQWSKDKRKNFAHS--KLTTAYRLFNQDGDSFGGVTIDC 114 (385)
T ss_dssp EEEEEEEEETTEEEEEEESSCCCCCHHHHHHHHHHHHHTTHHHHHC--SSCCEEEEEEGGGGTCTTEEEEE
T ss_pred EEEEEECCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHhcC--CCCceEEEEeCCCCCCCceEEEE
Confidence 67899999994 3799999999999864 4444444888874 5789999999997 699999996
No 9
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=95.48 E-value=0.0037 Score=56.51 Aligned_cols=62 Identities=18% Similarity=0.065 Sum_probs=46.4
Q ss_pred eeEEEeccCC---CCceEeCC-CCcCCChhHHHHHHHHHHHHhcC--CCCCCCCcCCCCcc-ceeEEEEEe
Q 038639 156 YALGLHAPGF---FDKVLNID-KCLLQSEPANLVLAAVQDYWRDP--QLGLSPYDVHSHSG-FLKHLMLRT 219 (229)
Q Consensus 156 ~~lGf~~rgS---~~~IVdie-~CpL~~~~in~il~~lr~~l~~~--~~~l~~Yd~~~~~G-~LRhLvVR~ 219 (229)
+.+|||.++| + +|++++ +|+|.++ +.+.+....++.++- +.+++.|+...+.| +|++|+||.
T Consensus 44 l~~g~~~~~s~~~~-ri~~~~~~~~i~~~-~~~~l~~~~~~r~~~~~~~~~~~yr~~~~~~d~l~~l~vd~ 112 (382)
T 1wxx_A 44 LALALYNPHTDLAV-RAYRFAPAEDPVAA-LLENLAQALARREAVLRQDPEGGYRLVHAEGDLLPGLVVDY 112 (382)
T ss_dssp EEEEEECTTSSSCE-EEEESSCCSCHHHH-HHHHHHHHHHHHHHHHHHCTTSEEEEEEGGGGTCTTEEEEE
T ss_pred EEEEEECCCCCEEE-EEEECCCCCCcCHH-HHHHHHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcEEEEE
Confidence 6789999999 6 899999 9999888 655554443322210 02788999999887 899999996
No 10
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=70.80 E-value=0.51 Score=42.20 Aligned_cols=40 Identities=18% Similarity=0.278 Sum_probs=31.1
Q ss_pred EeCCCCcCCChhHHHHHHHHHHHHhcCCCCCCCCcCCCCccceeEE
Q 038639 170 LNIDKCLLQSEPANLVLAAVQDYWRDPQLGLSPYDVHSHSGFLKHL 215 (229)
Q Consensus 170 Vdie~CpL~~~~in~il~~lr~~l~~~~~~l~~Yd~~~~~G~LRhL 215 (229)
+-+++|+|+++.++++++.++ + ..++++| .+...|+|+.|
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~---~--~~~l~~~-~~~~~~ll~~L 52 (373)
T 2qm3_A 13 LGTENLYFQSNAMKEIVERVK---T--KTKIPVY-ERSVENVLSAV 52 (373)
T ss_dssp ----CTTTSCCHHHHHHHHHH---T--TCSSCCC-HHHHHHHHHHH
T ss_pred cCcccchhhhhHHHHHHHHHH---H--hcCccHh-HHHHHHHHHHh
Confidence 346899999999999999888 3 3789898 87888888876
No 11
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=64.80 E-value=31 Score=23.67 Aligned_cols=50 Identities=12% Similarity=0.012 Sum_probs=35.5
Q ss_pred CCCCCcEEEEEEeeeCCCCcEEEEEcCCCcEEEec----------CCCCCcEEEEEEEeecC
Q 038639 75 KPIRGQELELVCESLAYKGKGVCKVADTGFVVLCD----------RVLPGEKFIGRVTRKKG 126 (229)
Q Consensus 75 ~~k~~~~i~l~I~~l~~~G~GVar~~~~G~vVFVp----------gaLPGE~V~vrI~k~kk 126 (229)
.++.|+.++.+|.++...|.-|--.+ +.--|++ ..-+||.|.++|.+...
T Consensus 2 ~~~~G~iv~G~V~~v~~~G~fV~l~~--~~~Gllh~sel~~~~~~~~~~Gd~V~v~V~~vd~ 61 (80)
T 2k52_A 2 DVEPGKFYKGVVTRIEKYGAFINLNE--QVRGLLRPRDMISLRLENLNVGDEIIVQAIDVRP 61 (80)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEEET--TEEEEECGGGCSSCCGGGCCTTCEEEEEEEEEET
T ss_pred CCCCCCEEEEEEEEEeCCEEEEEECC--CCEEEEEHHHCCcccceeeCCCCEEEEEEEEEEC
Confidence 35789999999999988776554332 3334443 24489999999998643
No 12
>1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DN binding, QB fold, greek-KEY topology, structur genomics; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=63.66 E-value=38 Score=24.38 Aligned_cols=48 Identities=13% Similarity=0.102 Sum_probs=35.2
Q ss_pred CCcEEEEEEeeeCCCCcEEEEEcCCCcEEEec---------CCCCCcEEEEEEEeecC
Q 038639 78 RGQELELVCESLAYKGKGVCKVADTGFVVLCD---------RVLPGEKFIGRVTRKKG 126 (229)
Q Consensus 78 ~~~~i~l~I~~l~~~G~GVar~~~~G~vVFVp---------gaLPGE~V~vrI~k~kk 126 (229)
..+....+|..+. +|+|....++.+.-|||- -.-+||+|+..+....+
T Consensus 15 ~~~~~~G~Vkwf~-KGfGFI~~ddgg~DVFvH~s~i~~~~~~L~~G~~V~F~v~~~~k 71 (89)
T 1wfq_A 15 AALRETGVIEKLL-TSYGFIQCSERQARLFFHCSQYNGNLQDLKVGDDVEFEVSSDRR 71 (89)
T ss_dssp CCCEEEEEEEEEC-SSEEEEEETTTTEEEEEETTTCSSCTTTCCTTCCEEEEEEECSS
T ss_pred cccccceEEEEEe-CCeeEEecCCCCccEEEEhHHhhCccCCCCCCCEEEEEEEECCC
Confidence 4456778888886 999998876333678885 23478999999987654
No 13
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=63.23 E-value=10 Score=36.85 Aligned_cols=42 Identities=24% Similarity=0.310 Sum_probs=33.6
Q ss_pred EEEEEeeeCCCCcEEEEEcCCCcEEEec-----CCCCCcEEEEEEEeec
Q 038639 82 LELVCESLAYKGKGVCKVADTGFVVLCD-----RVLPGEKFIGRVTRKK 125 (229)
Q Consensus 82 i~l~I~~l~~~G~GVar~~~~G~vVFVp-----gaLPGE~V~vrI~k~k 125 (229)
++.++ +.+.+|+|.+..+ ++.-+||+ +++.||+|.|++.+.+
T Consensus 22 ~~G~~-~~~~~GfgF~~~d-~~~difi~~~~~~~a~~GD~V~v~i~~~~ 68 (644)
T 2id0_A 22 AEGVV-KATEKGFGFLEVD-AQKSYFIPPPQMKKVMHGDRIIAVIHSEK 68 (644)
T ss_dssp EEEEE-ECCSSSCEEEECS-SSCEEEECHHHHTTSCTTCEEEEEEECCS
T ss_pred EEEEE-EEecCCcEEEEEC-CCCCEEECHHHHhcCCCCCEEEEEEecCC
Confidence 44444 4567899999986 45789997 8999999999999764
No 14
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=53.74 E-value=39 Score=24.96 Aligned_cols=50 Identities=20% Similarity=0.078 Sum_probs=35.6
Q ss_pred CCCCCcEEEEEEeeeCCCCcEEEEEcCCCcEEEec---------------CCCCCcEEEEEEEeecC
Q 038639 75 KPIRGQELELVCESLAYKGKGVCKVADTGFVVLCD---------------RVLPGEKFIGRVTRKKG 126 (229)
Q Consensus 75 ~~k~~~~i~l~I~~l~~~G~GVar~~~~G~vVFVp---------------gaLPGE~V~vrI~k~kk 126 (229)
.++.|++++.+|.++...|.-| .++ ++.--||+ ..-+||.|+++|.+...
T Consensus 27 ~~~~G~~~~G~V~~v~~~G~FV-~l~-~~~~Glvhisel~~~~~~~~~~~~~~vGd~V~vkV~~vd~ 91 (115)
T 2khi_A 27 RYPEGTKLTGRVTNLTDYGCFV-EIE-EGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDIDE 91 (115)
T ss_dssp SSCSSCEEEEEEEEEETTEEEE-ECS-TTCEEEEETTSSSCSSTTCSSTTTCCTTCEEEEEEEEEET
T ss_pred cCCCCCEEEEEEEEEECCEEEE-EEC-CCCEEEEEHHHCCccccccCcccEECCCCEEEEEEEEEEC
Confidence 4578999999999998877654 333 24444554 13479999999998653
No 15
>1a62_A RHO; transcription termination, termination, RNA binding domain, transcription regulation, OB fold, F1-ATPase; 1.55A {Escherichia coli BL21} SCOP: a.140.3.1 b.40.4.5 PDB: 1a63_A 2a8v_A 1a8v_A
Probab=48.65 E-value=34 Score=26.36 Aligned_cols=40 Identities=18% Similarity=0.254 Sum_probs=30.7
Q ss_pred eeeCCCCcEEEEEcC-----CCcEEEec-------CCCCCcEEEEEEEeecC
Q 038639 87 ESLAYKGKGVCKVAD-----TGFVVLCD-------RVLPGEKFIGRVTRKKG 126 (229)
Q Consensus 87 ~~l~~~G~GVar~~~-----~G~vVFVp-------gaLPGE~V~vrI~k~kk 126 (229)
..+..+|+|..|.++ +..-|||+ ++..||.|.+++...+.
T Consensus 55 lei~~dG~GFlr~~~~~y~~~~~DiyVs~~~irrf~lr~GD~V~g~vr~~~~ 106 (130)
T 1a62_A 55 LEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKE 106 (130)
T ss_dssp EEECTTSCEEEECGGGTTCCCTTCEEECHHHHHHTTCCTTCEEEEEEECCCT
T ss_pred EEEcCCCeEEEecCCcCCCCCCCCEEECHHHHhHhCCCCCCEEEEEEeCCCC
Confidence 345678999999761 23458997 89999999999887654
No 16
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=47.99 E-value=41 Score=24.46 Aligned_cols=49 Identities=16% Similarity=0.165 Sum_probs=33.6
Q ss_pred CCCCcEEEEEEeeeCCCCcEEEEEcCCCcEEEecC--------------CCCCcEEEEEEEeecC
Q 038639 76 PIRGQELELVCESLAYKGKGVCKVADTGFVVLCDR--------------VLPGEKFIGRVTRKKG 126 (229)
Q Consensus 76 ~k~~~~i~l~I~~l~~~G~GVar~~~~G~vVFVpg--------------aLPGE~V~vrI~k~kk 126 (229)
++.|++++.+|.++...|.-| .++ ++..-||+- .-+||.|.++|.+...
T Consensus 29 ~~~G~iv~G~V~~v~~~G~fV-~l~-~~~~Gll~~sel~~~~~~~~~~~~~vGd~V~v~V~~vd~ 91 (109)
T 2khj_A 29 NKKGAIVTGKVTAVDAKGATV-ELA-DGVEGYLRASEASRDRVEDATLVLSVGDEVEAKFTGVDR 91 (109)
T ss_dssp CCSSSEEEEEEEEECSSCEEE-ECS-TTCBCCBCTTCCCSSSSSSGGGSCCTTCEEEEEEEEEET
T ss_pred CCCCCEEEEEEEEEECCeEEE-EEC-CCCEEEEEHHHcCcccccChhhccCCCCEEEEEEEEEEC
Confidence 468999999999999887544 332 132223331 2379999999998753
No 17
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=47.94 E-value=37 Score=24.34 Aligned_cols=48 Identities=15% Similarity=0.162 Sum_probs=34.1
Q ss_pred CcEEEEEEeeeCCCCcEEEEEcCCCcEEEecC---------CCCCcEEEEEEEeecCC
Q 038639 79 GQELELVCESLAYKGKGVCKVADTGFVVLCDR---------VLPGEKFIGRVTRKKGS 127 (229)
Q Consensus 79 ~~~i~l~I~~l~~~G~GVar~~~~G~vVFVpg---------aLPGE~V~vrI~k~kk~ 127 (229)
++....+|..+. +|+|....++.|.-|||.. .-+||+|+..+...++.
T Consensus 16 ~~~~~G~Vk~f~-kGfGFI~~ddgg~DvFvH~S~i~~~~~~L~~G~~V~F~~~~g~~G 72 (88)
T 2yty_A 16 SKRLLGYVATLK-DNFGFIETANHDKEIFFHYSEFSGDVDSLELGDMVEYSLSKGKGN 72 (88)
T ss_dssp CCCEEEEEEEEC-SSEEEEECSSSSCEEEEETTTCCSCTTTCCTTCEEEECCCCCSCS
T ss_pred CCceeEEEEEEE-CCccEEecCCCCceEEEEEhhhccccCcCCCCCEEEEEEEECCCC
Confidence 345678888887 8999988763346788852 23688888887765443
No 18
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=43.29 E-value=85 Score=23.65 Aligned_cols=49 Identities=14% Similarity=-0.048 Sum_probs=35.0
Q ss_pred CCCCcEEEEEEeeeCCCCcEEEEEcCCCcEEEec--------------CCCCCcEEEEEEEeecC
Q 038639 76 PIRGQELELVCESLAYKGKGVCKVADTGFVVLCD--------------RVLPGEKFIGRVTRKKG 126 (229)
Q Consensus 76 ~k~~~~i~l~I~~l~~~G~GVar~~~~G~vVFVp--------------gaLPGE~V~vrI~k~kk 126 (229)
++.|++++.+|.++...|.-|--.+ +..-||+ ..-+||.|.|+|.+...
T Consensus 5 ~~vG~iv~G~V~~i~~~G~FV~l~~--~~~Glihisel~~~~~~~~~~~~~vGd~V~vkV~~vd~ 67 (130)
T 2k4k_A 5 FEVGSVYTGKVTGLQAYGAFVALDE--ETQGLVHISEVTHGFVKDINEHLSVGDEVQVKVLAVDE 67 (130)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEEET--TEEEEEEGGGTSSSCCSCGGGTCCTTCEEEEEEEEEET
T ss_pred CCCCCEEEEEEEEEeCCeEEEEECC--CcEEEEEHHHCCcccccCccccCCCCCEEEEEEEEEeC
Confidence 4689999999999988876554432 4434443 13479999999998753
No 19
>2f4l_A Acetamidase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; 2.50A {Thermotoga maritima} SCOP: b.23.3.1
Probab=43.18 E-value=20 Score=31.78 Aligned_cols=57 Identities=16% Similarity=0.117 Sum_probs=34.1
Q ss_pred CCCCCCCCcEEEEEEeeeCCCCcEEEEEcCC-----CcEEEecCCCCCcEEEEEEEeecC-Ceee
Q 038639 72 DYFKPIRGQELELVCESLAYKGKGVCKVADT-----GFVVLCDRVLPGEKFIGRVTRKKG-SYAE 130 (229)
Q Consensus 72 ~~~~~k~~~~i~l~I~~l~~~G~GVar~~~~-----G~vVFVpgaLPGE~V~vrI~k~kk-~y~~ 130 (229)
-...++.|+.+.++..+- ++|. +...+.+ -..|||.||-|||.++|+|.+.+- .|..
T Consensus 31 Pvl~V~~Gd~V~~eT~d~-~~~q-~~~~d~~~~h~~TGPi~VeGAePGD~L~V~I~~i~~~~~G~ 93 (297)
T 2f4l_A 31 PVEEVYPGEQVVFETLDA-LGGS-YDKIDFSKVNPATGPVFVNGVKPGDTLKVRIKRIELPRRGM 93 (297)
T ss_dssp CSCEECTTCEEEEEECCT-TC---------CCCCCEEEEEEETTCCTTCEEEEEEEEEECCSEEE
T ss_pred ceEEECCCCEEEEEECcC-CCCc-ccccCCCCccccccCeEEcCCCCCCEEEEEEEEeeecCcEE
Confidence 344557898877776643 2333 3222100 127999999999999999998763 4443
No 20
>2ii1_A Acetamidase; 10172637, structural genomics, joint center for structural genomics, PSI-2, protein structure initiative, J hydrolase; 1.95A {Bacillus halodurans}
Probab=41.26 E-value=20 Score=31.65 Aligned_cols=26 Identities=12% Similarity=0.105 Sum_probs=21.5
Q ss_pred EEEecCCCCCcEEEEEEEeec-CCeee
Q 038639 105 VVLCDRVLPGEKFIGRVTRKK-GSYAE 130 (229)
Q Consensus 105 vVFVpgaLPGE~V~vrI~k~k-k~y~~ 130 (229)
.|||.||-|||.++|+|.+.+ ..|..
T Consensus 63 Pi~VeGAePGD~L~V~I~~i~~~~~G~ 89 (301)
T 2ii1_A 63 PLYVEGARRGDMLEIEILDIKVGKQGV 89 (301)
T ss_dssp EEEEETCCTTCEEEEEEEEEEECSEEE
T ss_pred CeEEcCCCCCCEEEEEEEEEeecCceE
Confidence 799999999999999998875 34443
No 21
>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=39.09 E-value=70 Score=23.25 Aligned_cols=47 Identities=13% Similarity=0.170 Sum_probs=33.3
Q ss_pred cEEEEEEeeeCCCCcEEEEEcCCCcEEEecC---------CCCCcEEEEEEEeecCC
Q 038639 80 QELELVCESLAYKGKGVCKVADTGFVVLCDR---------VLPGEKFIGRVTRKKGS 127 (229)
Q Consensus 80 ~~i~l~I~~l~~~G~GVar~~~~G~vVFVpg---------aLPGE~V~vrI~k~kk~ 127 (229)
.....+|..+ .+|+|....++.+.-|||-. .-+||+|+..+...++.
T Consensus 17 ~~~~G~Vkwf-~KGfGFI~~ddg~~DvFvH~s~i~~~~~~L~~G~~V~F~v~~~~~g 72 (97)
T 2ytx_A 17 ARCQGVVCAM-KEAFGFIERGDVVKEIFFHYSEFKGDLETLQPGDDVEFTIKDRNGK 72 (97)
T ss_dssp CCEEEEECCC-CSSEEEEECSSSCCCEEEETTTCCSCTTSCCSCCEEEEEECCCSSS
T ss_pred cceeEEEEEE-eCCceEEecCCCCceEEEEehHhccccCCCCCCCEEEEEEEcCCCC
Confidence 3467888888 99999988763235677742 34688999988654443
No 22
>3mjj_A Predicted acetamidase/formamidase; beta/alpha structure, hydrolase; 1.99A {Thermoanaerobacter tengcongensis} PDB: 3tkk_A
Probab=38.98 E-value=23 Score=31.35 Aligned_cols=21 Identities=5% Similarity=0.230 Sum_probs=19.3
Q ss_pred EEEecCCCCCcEEEEEEEeec
Q 038639 105 VVLCDRVLPGEKFIGRVTRKK 125 (229)
Q Consensus 105 vVFVpgaLPGE~V~vrI~k~k 125 (229)
.|||.||-|||..+|+|.+..
T Consensus 65 Pi~VeGAePGD~L~V~I~~i~ 85 (301)
T 3mjj_A 65 PIFVEGAKEGDVLKVKIKKIE 85 (301)
T ss_dssp EEEEETCCTTCEEEEEEEEEE
T ss_pred ceEEcCCCCCCEEEEEEEEEE
Confidence 699999999999999999865
No 23
>2l3b_A Conserved protein found in conjugate transposon; beta, structural genomics, PSI-biology; NMR {Bacteroides thetaiotaomicron}
Probab=38.28 E-value=48 Score=25.90 Aligned_cols=44 Identities=32% Similarity=0.420 Sum_probs=31.3
Q ss_pred CCCcEEEEEEe---------------eeCCCCcEEEEEcCCCcEEEecC---CCCCcEEEEEEE
Q 038639 77 IRGQELELVCE---------------SLAYKGKGVCKVADTGFVVLCDR---VLPGEKFIGRVT 122 (229)
Q Consensus 77 k~~~~i~l~I~---------------~l~~~G~GVar~~~~G~vVFVpg---aLPGE~V~vrI~ 122 (229)
.+|+.+++.|+ -+..+|.|..+.+ +.++|+|+ .|+-|+.+.=.+
T Consensus 25 ~~GeTvEIR~~L~reG~f~~t~Y~IRYFQ~dGkG~L~~~--dg~~l~PND~YpL~~~~FRLYYt 86 (130)
T 2l3b_A 25 KVGETAEIRCQLHRDGRFEETKYFIRYFQPDGAGTLKMS--DGTVLLPNDLYPLPGETFRLYYT 86 (130)
T ss_dssp CTTCEEEEEEEEECSSCCSSCCCEEEEECSSCCCEEEET--TSCEECTTSCEECSCSEEEEEEE
T ss_pred CCCCeEEEEEEEecCceecccEEEEEEEeecCCeeEEeC--CCCEecCCcccccCcCeEEEEEe
Confidence 46777666554 5677999999996 56899985 477777655333
No 24
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=36.77 E-value=8.3 Score=38.22 Aligned_cols=47 Identities=13% Similarity=0.060 Sum_probs=35.1
Q ss_pred CCCcEEEEEEeeeCCCCc--EEEEEcCCCcEEEecC------CCCCcEEEEEEEee
Q 038639 77 IRGQELELVCESLAYKGK--GVCKVADTGFVVLCDR------VLPGEKFIGRVTRK 124 (229)
Q Consensus 77 k~~~~i~l~I~~l~~~G~--GVar~~~~G~vVFVpg------aLPGE~V~vrI~k~ 124 (229)
+.|+.+..++ .+...|+ |.+..++.+.-|||++ |+-||+|.|++.+.
T Consensus 28 ~~g~l~~G~l-~~~~~~~~~gfv~~~~~~~di~I~~~~~~n~A~~GD~V~V~i~~~ 82 (760)
T 2vnu_D 28 KNGVLYQGNI-QISEYNFLEGSVSLPRFSKPVLIVGQKNLNRAFNGDQVIVELLPQ 82 (760)
T ss_dssp HHTSEEEEEE-EECSSBTTEEEECCSSSSSCEEEESHHHHTTCCTTCEEEEEECCG
T ss_pred HcCCEEEEEE-EEecCCCccEEEEcCCCCCCEEEcChhhhccccCCCEEEEEEecc
Confidence 4566666644 4677888 8887763335699987 89999999999865
No 25
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=33.90 E-value=93 Score=20.88 Aligned_cols=45 Identities=16% Similarity=0.138 Sum_probs=31.6
Q ss_pred EEEEeeeC-CCCcEEEEEcCCCcEEEec----------CCCCCcEEEEEEEeecCC
Q 038639 83 ELVCESLA-YKGKGVCKVADTGFVVLCD----------RVLPGEKFIGRVTRKKGS 127 (229)
Q Consensus 83 ~l~I~~l~-~~G~GVar~~~~G~vVFVp----------gaLPGE~V~vrI~k~kk~ 127 (229)
..+|..++ .+|+|....++.|.-|||. -.-+||+|+..+....+.
T Consensus 3 ~G~Vk~fn~~kGfGFI~~~~gg~dvFvH~s~i~~~g~~~l~~G~~V~f~~~~~~kG 58 (67)
T 3cam_A 3 TGIVKWFNDAKGFGFITPDEGGEDLFAHFSAINMEGFKTLKEGQRVSFDVTTGPKG 58 (67)
T ss_dssp EEEEEEEETTTTEEEEEETTSCCCEEEEGGGBCGGGGSSCCTTCEEEEEEEEETTE
T ss_pred CEEEEEEECCCCeEEEecCCCCccEEEEHHHccccCCCCCCCCCEEEEEEEECCCC
Confidence 35566664 5899998876335678873 245899999999876543
No 26
>3b9t_A Twin-arginine translocation pathway signal protei; YP_546212.1, predicted acetamidase/formamidase, acetamidase/formamidase family; 1.58A {Methylobacillus flagellatus KT}
Probab=33.26 E-value=33 Score=32.43 Aligned_cols=22 Identities=18% Similarity=0.128 Sum_probs=19.9
Q ss_pred EEEecCCCCCcEEEEEEEeecC
Q 038639 105 VVLCDRVLPGEKFIGRVTRKKG 126 (229)
Q Consensus 105 vVFVpgaLPGE~V~vrI~k~kk 126 (229)
.|||.||=|||.++|+|.+..-
T Consensus 166 PI~VeGAEPGDvL~V~IldI~p 187 (484)
T 3b9t_A 166 PVAIKGAEPGDVLEVRIVDVAL 187 (484)
T ss_dssp EEEETTCCTTCEEEEEEEEEEE
T ss_pred CeeecCCCCCCEEEEEEEEEEe
Confidence 7999999999999999988753
No 27
>2l7q_A Conserved protein found in conjugate transposon; NESG, structural genomics, PSI-biology; NMR {Bacteroides vulgatus}
Probab=33.24 E-value=47 Score=25.71 Aligned_cols=44 Identities=27% Similarity=0.200 Sum_probs=30.7
Q ss_pred CCCcEEEEEEe---------------eeCCCCcEEEEEcCCCcEEEecC---CCCCcEEEEEEE
Q 038639 77 IRGQELELVCE---------------SLAYKGKGVCKVADTGFVVLCDR---VLPGEKFIGRVT 122 (229)
Q Consensus 77 k~~~~i~l~I~---------------~l~~~G~GVar~~~~G~vVFVpg---aLPGE~V~vrI~ 122 (229)
.+|+.+++.|+ -+..+|.|..+.+ +.++|+|+ .|+-|+.+.=-+
T Consensus 24 ~~GeTvEIR~~L~reG~f~~t~Y~IRYFQ~dGkG~L~~~--~Gtvl~PND~YpL~~~~FRLYYt 85 (124)
T 2l7q_A 24 AGDETVEIRLEIKPSGNFIGTVYTLRYFQPDGKGSLKME--DGTVLKPNDRYLLNEWKFRLYYT 85 (124)
T ss_dssp CSSEEEEEEEEEEECCCCSCCCCEEEEECCSSCEEEEET--TSCBCCTTCEECCSCSEEEEEEE
T ss_pred CCCCeEEEEEEEecCceecccEEEEEEEeecCCeeEEec--CCcEeccccccccccCeEEEEEe
Confidence 46776666554 5677999999997 56888985 477776655333
No 28
>2wkn_A Formamidase, gamma-lactamase; hydrolase, biocatalysis; 2.08A {Delftia acidovorans}
Probab=32.59 E-value=35 Score=31.52 Aligned_cols=22 Identities=14% Similarity=0.120 Sum_probs=20.2
Q ss_pred EEEecCCCCCcEEEEEEEeecC
Q 038639 105 VVLCDRVLPGEKFIGRVTRKKG 126 (229)
Q Consensus 105 vVFVpgaLPGE~V~vrI~k~kk 126 (229)
.|||.||=|||.++|+|.+...
T Consensus 75 PI~VeGAePGDvL~V~IldI~~ 96 (409)
T 2wkn_A 75 PVGVKGAEPGDLLVVDLLDIGA 96 (409)
T ss_dssp EEEETTCCTTCEEEEEEEEEEC
T ss_pred CeEEcCCCCCCEEEEEEEEeee
Confidence 6999999999999999998873
No 29
>2rf4_A DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=31.14 E-value=1.3e+02 Score=24.77 Aligned_cols=37 Identities=19% Similarity=0.147 Sum_probs=26.3
Q ss_pred CCCCCcEEEEEEeeeCCCCcEEEEEcCCCcEEEecC-CCC
Q 038639 75 KPIRGQELELVCESLAYKGKGVCKVADTGFVVLCDR-VLP 113 (229)
Q Consensus 75 ~~k~~~~i~l~I~~l~~~G~GVar~~~~G~vVFVpg-aLP 113 (229)
.+.+|++++..|...+.+|-|+.-+. =..+|||. .||
T Consensus 126 rPf~GevL~G~V~~~s~~~Ig~~~~G--~Fn~~Ip~~~ip 163 (214)
T 2rf4_A 126 QPQVGDVLEGYIFIQSASHIGLLIHD--AFNASIKKNNIP 163 (214)
T ss_dssp CCCTTCEEEEEECCCCSSCEEEEETT--TEEEEECSTTSC
T ss_pred ecCCCCEEEEEEEEECCCcEEEEEeC--CEEEEEcHHHCC
Confidence 44689999999999999999885441 23467763 455
No 30
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=29.19 E-value=1.4e+02 Score=20.50 Aligned_cols=45 Identities=13% Similarity=-0.011 Sum_probs=32.0
Q ss_pred EEEEEeeeC-CCCcEEEEEcCCCcEEEec--------CCCCCcEEEEEEEeecCC
Q 038639 82 LELVCESLA-YKGKGVCKVADTGFVVLCD--------RVLPGEKFIGRVTRKKGS 127 (229)
Q Consensus 82 i~l~I~~l~-~~G~GVar~~~~G~vVFVp--------gaLPGE~V~vrI~k~kk~ 127 (229)
...+|..++ .+|+|....+ +|.-.||- -.-+||+|+..+....+.
T Consensus 3 ~~G~Vkwfn~~KGfGFI~~~-dg~~dFvH~s~i~~~g~l~~G~~V~F~~~~g~kG 56 (74)
T 2k5n_A 3 MNGTITTWFKDKGFGFIKDE-NGDNRYFHVIKVANPDLIKKDAAVTFEPTTNNKG 56 (74)
T ss_dssp EEEEEEEEETTTTEEEEEES-SSCEEEEEGGGBSSGGGCCTTCEEEEEEEECSSS
T ss_pred cceEEEEEECCCCeEEEecC-CCCceEEEHhHcccCCCCCCCCEEEEEEEeCCCC
Confidence 356677665 6899998876 34444885 245799999999876554
No 31
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=28.24 E-value=88 Score=22.99 Aligned_cols=51 Identities=22% Similarity=0.092 Sum_probs=33.8
Q ss_pred CCCCCcEEEEEEeeeCCCCcEEEEEcCCCcEEEec---------------CCCCCcEEEEEEEeecC
Q 038639 75 KPIRGQELELVCESLAYKGKGVCKVADTGFVVLCD---------------RVLPGEKFIGRVTRKKG 126 (229)
Q Consensus 75 ~~k~~~~i~l~I~~l~~~G~GVar~~~~G~vVFVp---------------gaLPGE~V~vrI~k~kk 126 (229)
.++.|++++.+|.++...|.-|---. .+.-.|++ ..-+||.|+|+|.+...
T Consensus 18 ~l~~G~i~~G~V~~v~~fG~fV~l~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~ 83 (119)
T 1wi5_A 18 ALKPGMLLTGTVSSLEDHGYLVDIGV-DGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKG 83 (119)
T ss_dssp TCCTTCEEEEEEEEECSSEEEEECCC-SSCEEEEEHHHHHHHHHHHSSSCCCCTTCEEEEEEEECCT
T ss_pred cCCCCCEEEEEEEEEeCceEEEEECC-CCeEEEEEEecccccccccCccCEeCCCCEEEEEEEEEeC
Confidence 45789999999999988776543220 01112221 24589999999998753
No 32
>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8}
Probab=26.85 E-value=1.2e+02 Score=25.67 Aligned_cols=50 Identities=14% Similarity=0.052 Sum_probs=33.8
Q ss_pred CCcEEEEEEeeeCCCCcEEEEEcC-----CCcEEEecC-CCCCcEEEEEEEeecCCee
Q 038639 78 RGQELELVCESLAYKGKGVCKVAD-----TGFVVLCDR-VLPGEKFIGRVTRKKGSYA 129 (229)
Q Consensus 78 ~~~~i~l~I~~l~~~G~GVar~~~-----~G~vVFVpg-aLPGE~V~vrI~k~kk~y~ 129 (229)
.|..+++-|+.. .+|.-+||.++ ||. |+|++ ..+|+.|.|+|+.......
T Consensus 236 ~g~~~~vl~e~~-~~~~~~g~~~~~~~~~dg~-~~~~~~~~~g~~~~v~i~~~~~~~l 291 (304)
T 2qgq_A 236 VGKKLKFLVEGK-EGKFLVGRTWTEAPEVDGV-VFVRGKGKIGDFLEVVIKEHDEYDM 291 (304)
T ss_dssp TTCEEEEEEEEE-ETTEEEEEETTCCTTTSCC-EEEESCCCTTCEEEEEEEEEETTEE
T ss_pred CCCEEEEEEEec-CCCEEEEECCCCcEeccce-EEEcCCCCCCCEEEEEEEEeeCCeE
Confidence 588888889886 34444677652 232 25553 3799999999998765443
No 33
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=26.84 E-value=1.4e+02 Score=24.79 Aligned_cols=52 Identities=13% Similarity=0.087 Sum_probs=36.8
Q ss_pred CCCCCCCcEEEEEEeeeCCCCcEEEEEcCCCcEEEec------------------CCCCCcEEEEEEEeecC
Q 038639 73 YFKPIRGQELELVCESLAYKGKGVCKVADTGFVVLCD------------------RVLPGEKFIGRVTRKKG 126 (229)
Q Consensus 73 ~~~~k~~~~i~l~I~~l~~~G~GVar~~~~G~vVFVp------------------gaLPGE~V~vrI~k~kk 126 (229)
.+.++.|+.+..+|.++...|.-|.--. +..-+++ ..=+||.|.+++.....
T Consensus 61 ~y~p~~GDiV~G~V~~v~~~~~~V~I~~--~~~g~l~isei~~~~~~~~~~~~~~~l~~GD~V~a~Vi~v~~ 130 (235)
T 2z0s_A 61 IYVPQAGDVVIGLIQSVGIMNWFVDINS--PYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAKVVAFDK 130 (235)
T ss_dssp CCCCCTTCCEEEEEEEECSSEEEEECSS--SSCEEEEHHHHHTSCCCTTTTCCTTSSCTTCEEEEEEEEECT
T ss_pred ccCCCCCCEEEEEEEEEeCCeEEEEeCC--CeEEEEEHHHhCCCccccchhhHhhcCCCCCEEEEEEEEECC
Confidence 3567899999999999988876554221 2222332 45799999999998754
No 34
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=26.67 E-value=1.6e+02 Score=20.33 Aligned_cols=47 Identities=19% Similarity=0.097 Sum_probs=33.8
Q ss_pred EEEEEEeeeC-CCCcEEEEEcCCCcEEEecC--------------CCCCcEEEEEEEeecCC
Q 038639 81 ELELVCESLA-YKGKGVCKVADTGFVVLCDR--------------VLPGEKFIGRVTRKKGS 127 (229)
Q Consensus 81 ~i~l~I~~l~-~~G~GVar~~~~G~vVFVpg--------------aLPGE~V~vrI~k~kk~ 127 (229)
....+|.-++ .+|+|....++.+.-|||-. .-+||+|+..+....+.
T Consensus 8 ~~~G~Vkwfn~~kGfGFI~~~~gg~DvFvH~s~i~~~~~~~g~~~l~~G~~V~f~~~~~~kG 69 (79)
T 1h95_A 8 KVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKG 69 (79)
T ss_dssp EEEEEEEEEETTTTEEEEEEGGGTEEEEEEGGGBCSCCCSCCSCSCCSSCEEEEEEEECSSS
T ss_pred ccceEEEEEECCCCcEEEecCCCCccEEEEhHHccccccccccccCCCCCEEEEEEEECCCC
Confidence 4568888876 69999988763356788851 22699999999876544
No 35
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=24.42 E-value=1e+02 Score=20.56 Aligned_cols=43 Identities=16% Similarity=0.081 Sum_probs=29.8
Q ss_pred EEEeeeC-CCCcEEEEEcCCCcEEEec----------CCCCCcEEEEEEEeecCC
Q 038639 84 LVCESLA-YKGKGVCKVADTGFVVLCD----------RVLPGEKFIGRVTRKKGS 127 (229)
Q Consensus 84 l~I~~l~-~~G~GVar~~~~G~vVFVp----------gaLPGE~V~vrI~k~kk~ 127 (229)
.+|..++ .+|+|....+ +|.-|||. -.-+||+|+..+....+.
T Consensus 3 G~Vk~fn~~kGfGFI~~~-~g~dvFvH~s~i~~~g~~~l~~G~~V~f~~~~~~~G 56 (66)
T 1g6p_A 3 GKVKWFDSKKGYGFITKD-EGGDVFVHWSAIEMEGFKTLKEGQVVEFEIQEGKKG 56 (66)
T ss_dssp EEEEEEETTTTEEEEEET-TSCBCBBCSSSSCCSSCCCCCSSSEEEEEEECSSSC
T ss_pred EEEEEEECCCCEEEEecC-CCceEEEEhHHccccCCCCCCCCCEEEEEEEECCCC
Confidence 4455555 6899998876 46677774 134789999988765543
No 36
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=24.14 E-value=1.6e+02 Score=19.47 Aligned_cols=44 Identities=16% Similarity=0.151 Sum_probs=31.6
Q ss_pred EEEEeeeC-CCCcEEEEEcCCCcEEEec----------CCCCCcEEEEEEEeecCC
Q 038639 83 ELVCESLA-YKGKGVCKVADTGFVVLCD----------RVLPGEKFIGRVTRKKGS 127 (229)
Q Consensus 83 ~l~I~~l~-~~G~GVar~~~~G~vVFVp----------gaLPGE~V~vrI~k~kk~ 127 (229)
..+|..++ .+|+|....+ +|.-|||. -.-+||+|+..+....+.
T Consensus 3 ~G~Vk~fn~~kGfGFI~~~-~g~dvFvH~s~i~~~g~~~l~~G~~V~f~~~~~~kG 57 (66)
T 1c9o_A 3 RGKVKWFNNEKGYGFIEVE-GGSDVFVHFTAIQGEGFKTLEEGQEVSFEIVQGNRG 57 (66)
T ss_dssp EEEEEEEETTTTEEEEEET-TEEEEEEEGGGBCSSSCCCCCTTCEEEEEEEEETTE
T ss_pred ceEEEEEECCCCeEEEecC-CCccEEEEHHHccccCCCCCCCCCEEEEEEEECCCC
Confidence 45666665 6899998876 45678874 145899999999876554
No 37
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=21.36 E-value=2.4e+02 Score=23.83 Aligned_cols=52 Identities=15% Similarity=0.117 Sum_probs=36.4
Q ss_pred CCCCCCCcEEEEEEeeeCCCCcEEEEEcCCCcEEEec-----------------CCCCCcEEEEEEEeecC
Q 038639 73 YFKPIRGQELELVCESLAYKGKGVCKVADTGFVVLCD-----------------RVLPGEKFIGRVTRKKG 126 (229)
Q Consensus 73 ~~~~k~~~~i~l~I~~l~~~G~GVar~~~~G~vVFVp-----------------gaLPGE~V~vrI~k~kk 126 (229)
.+.++.|+.+..+|.++...|.-|.--+ +..-+++ ..=+||.|.+++.....
T Consensus 69 ~y~p~~GDiV~G~V~~v~~~ga~VdI~~--~~~GlL~isei~~~~~~~~~~~~~~l~vGD~V~arVi~v~~ 137 (251)
T 2je6_I 69 FYYPKINDIVIGLVEDVEIYGWVVDIKA--PYKAYLPASNLLGRSINVGEDLRRYLDVGDYVIARIENFDR 137 (251)
T ss_dssp CCCCCTTCEEEEEEEEECSSEEEEECSS--SSCEEEEHHHHHTSCCCTTCCCSSSCCTTCEEEEEEEEEET
T ss_pred ccCCCCCCEEEEEEEEEeCceEEEEcCC--CeEEEEEHHHhcCCccccccchhhcCCCCCEEEEEEEEECC
Confidence 3567899999999999988876554221 1222221 45689999999998754
No 38
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=20.92 E-value=2.7e+02 Score=21.81 Aligned_cols=45 Identities=22% Similarity=0.367 Sum_probs=33.1
Q ss_pred CcEEEEEEeeeC-CCCcEEEEEcCCCcEEEec--------CCCCCcEEEEEEEe
Q 038639 79 GQELELVCESLA-YKGKGVCKVADTGFVVLCD--------RVLPGEKFIGRVTR 123 (229)
Q Consensus 79 ~~~i~l~I~~l~-~~G~GVar~~~~G~vVFVp--------gaLPGE~V~vrI~k 123 (229)
+.+...+|..++ .+|+|....++.+.-|||- -.-.||+|++.+..
T Consensus 60 g~m~~GtVKwFn~~KGfGFI~~ddGg~DVFVH~Sai~~~~~L~eGq~V~Fev~~ 113 (147)
T 3aqq_A 60 GPVYKGVCKCFCRSKGHGFITPADGGPDIFLHISDVEGEYVPVEGDEVTYKMCS 113 (147)
T ss_dssp SCCEEEEEEEEETTTTEEEEEESSSCSCEEEEGGGEESSBCCCTTCEEEEEEEE
T ss_pred CCccceEEEEEeCCCCeEEeccCCCCccEEEEeeeecCCCcCCCCCEEEEEEEe
Confidence 445678888775 6999998876333668875 24679999999875
No 39
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=20.62 E-value=2.4e+02 Score=20.17 Aligned_cols=49 Identities=16% Similarity=0.228 Sum_probs=33.3
Q ss_pred CCcEEEEEEeee-CCCCcEEEEEcCCCcEEEec------------CCCCCcEEEEEEEeecC
Q 038639 78 RGQELELVCESL-AYKGKGVCKVADTGFVVLCD------------RVLPGEKFIGRVTRKKG 126 (229)
Q Consensus 78 ~~~~i~l~I~~l-~~~G~GVar~~~~G~vVFVp------------gaLPGE~V~vrI~k~kk 126 (229)
.++..+.+|..+ ..+|+|....++.+.-+||. -.-+||.|+..+.+...
T Consensus 13 ~~~~~~G~Vk~fn~~kGfGFI~~~~gg~dvfvH~s~l~~~~~~~~~l~~Ge~V~g~V~~i~~ 74 (101)
T 2bh8_A 13 QSGKMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAGSSGAAVRGNPQQGDRVEGKIKSITD 74 (101)
T ss_dssp ---CEEEEEEEEEGGGTEEEEEESSSSCEEEEECCCSCSSSCCCCCCCTTCEEEEEEEECCS
T ss_pred ccccceeEEEEEECCCCCEEEEeCCCCcEEEEEEEEEecCCccccCCCCCCEEEEEEEEeCC
Confidence 455678889888 56899987765334677775 13358999998887654
Done!