BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038643
(52 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AMN|A Chain A, Crystal Structure Of The Acyltransferase Domain Of The
Iterative Polyketide Synthase In Enediyne Biosynthesis
Reveals The Molecular Basis Of Substrate Specificity
pdb|4AMP|A Chain A, Crystal Structure Of The Acyltransferase Domain Of The
Iterative Polyketide Synthase In Enediyne Biosynthesis
Reveals The Molecular Basis Of Substrate Specificity
Length = 421
Score = 28.5 bits (62), Expect = 1.0, Method: Composition-based stats.
Identities = 11/40 (27%), Positives = 23/40 (57%)
Query: 3 GVVADISASVDWLKANGSKKVGMVGYCMGSALTIACSASL 42
++AD A + WL G++ VG +G+ +G ++ + +L
Sbjct: 153 AIIADSLAGIRWLDRLGARPVGALGHSLGELAALSWAGAL 192
>pdb|4AMO|A Chain A, Crystal Structure Of The Acyltransferase Domain Of The
Iterative Polyketide Synthase In Enediyne Biosynthesis
Reveals The Molecular Basis Of Substrate Specificity
Length = 421
Score = 28.5 bits (62), Expect = 1.1, Method: Composition-based stats.
Identities = 11/40 (27%), Positives = 23/40 (57%)
Query: 3 GVVADISASVDWLKANGSKKVGMVGYCMGSALTIACSASL 42
++AD A + WL G++ VG +G+ +G ++ + +L
Sbjct: 153 AIIADSLAGIRWLDRLGARPVGALGHSLGELAALSWAGAL 192
>pdb|1ZIX|A Chain A, Crystal Structure Analysis Of The Dienelactone Hydrolase
Mutant (E36d, R105h, C123s, G211d, K234n)- 1.8 A
Length = 236
Score = 28.1 bits (61), Expect = 1.5, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
Query: 5 VADISASVDWLK----ANGSKKVGMVGYCMGSALTIACSA 40
V D+ A++ + + +NG KVG+VGY +G AL +A
Sbjct: 97 VGDLEAAIHYARHQPYSNG--KVGLVGYSLGGALAFLVAA 134
>pdb|4AMM|A Chain A, Crystal Structure Of The Acyltransferase Domain Of The
Iterative Polyketide Synthase In Enediyne Biosynthesis
Reveals The Molecular Basis Of Substrate Specificity
Length = 401
Score = 27.7 bits (60), Expect = 1.5, Method: Composition-based stats.
Identities = 11/40 (27%), Positives = 23/40 (57%)
Query: 3 GVVADISASVDWLKANGSKKVGMVGYCMGSALTIACSASL 42
++AD A + WL G++ VG +G+ +G ++ + +L
Sbjct: 150 AIIADSLAGIRWLDRLGARPVGALGHSLGELAALSWAGAL 189
>pdb|1ZI6|A Chain A, Crystal Structure Analysis Of The Dienelactone Hydrolase
(c123s) Mutant- 1.7 A
Length = 236
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
Query: 5 VADISASVDWLK----ANGSKKVGMVGYCMGSALTIACSA 40
V D+ A++ + + +NG KVG+VGY +G AL +A
Sbjct: 97 VGDLEAAIRYARHQPYSNG--KVGLVGYSLGGALAFLVAA 134
>pdb|1ZIC|A Chain A, Crystal Structure Analysis Of The Dienelactone Hydrolase
(c123s, R206a) Mutant- 1.7 A
Length = 236
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
Query: 5 VADISASVDWLK----ANGSKKVGMVGYCMGSALTIACSA 40
V D+ A++ + + +NG KVG+VGY +G AL +A
Sbjct: 97 VGDLEAAIRYARHQPYSNG--KVGLVGYSLGGALAFLVAA 134
>pdb|1ZI9|A Chain A, Crystal Structure Analysis Of The Dienelactone Hydrolase
(e36d, C123s) Mutant- 1.5 A
Length = 236
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
Query: 5 VADISASVDWLK----ANGSKKVGMVGYCMGSALTIACSA 40
V D+ A++ + + +NG KVG+VGY +G AL +A
Sbjct: 97 VGDLEAAIRYARHQPYSNG--KVGLVGYSLGGALAFLVAA 134
>pdb|1ZJ4|A Chain A, Crystal Structure Analysis Of The Dienelactone Hydrolase
Mutant (E36d, C123s) Bound With The Pms Moiety Of The
Protease Inhibitor, Phenylmethylsulfonyl Fluoride
(Pmsf)- 1.7 A
Length = 236
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
Query: 5 VADISASVDWLK----ANGSKKVGMVGYCMGSALTIACSA 40
V D+ A++ + + +NG KVG+VGY +G AL +A
Sbjct: 97 VGDLEAAIRYARHQPYSNG--KVGLVGYXLGGALAFLVAA 134
>pdb|1ZIY|A Chain A, Crystal Structure Analysis Of The Dienelactone Hydrolase
Mutant (C123s) Bound With The Pms Moiety Of The Protease
Inhibitor, Phenylmethylsulfonyl Fluoride (Pmsf)- 1.9 A
Length = 236
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
Query: 5 VADISASVDWLK----ANGSKKVGMVGYCMGSALTIACSA 40
V D+ A++ + + +NG KVG+VGY +G AL +A
Sbjct: 97 VGDLEAAIRYARHQPYSNG--KVGLVGYXLGGALAFLVAA 134
>pdb|1GGV|A Chain A, Crystal Structure Of The C123s Mutant Of Dienelactone
Hydrolase (Dlh) Bound With The Pms Moiety Of The
Protease Inhibitor, Phenylmethylsulfonyl Fluoride (Pmsf)
Length = 232
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
Query: 5 VADISASVDWLK----ANGSKKVGMVGYCMGSALTIACSA 40
V D+ A++ + + +NG KVG+VGY +G AL +A
Sbjct: 97 VGDLEAAIRYARHQPYSNG--KVGLVGYXLGGALAFLVAA 134
>pdb|4FBM|A Chain A, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBM|B Chain B, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
Length = 293
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 6 ADISASVDWLKANGSKKVGMVGYCMGSALTIACSASLMER 45
ADI A++ WL+ + M G MG ALT+ + ER
Sbjct: 104 ADIVAAMRWLEER-CDVLFMTGLSMGGALTVWAAGQFPER 142
>pdb|4FBL|A Chain A, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|B Chain B, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|C Chain C, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
pdb|4FBL|D Chain D, Lips And Lipt, Two Metagenome-Derived Lipolytic Enzymes
Increase The Diversity Of Known Lipase And Esterase
Families
Length = 281
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 6 ADISASVDWLKANGSKKVGMVGYCMGSALTIACSASLMER 45
ADI A++ WL+ + M G MG ALT+ + ER
Sbjct: 106 ADIVAAMRWLEER-CDVLFMTGLSMGGALTVWAAGQFPER 144
>pdb|1ZI8|A Chain A, Crystal Structure Analysis Of The Dienelactone Hydrolase
Mutant(E36d, C123s, A134s, S208g, A229v, K234r)- 1.4 A
Length = 236
Score = 26.6 bits (57), Expect = 3.6, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 6/34 (17%)
Query: 5 VADISASVDWLK----ANGSKKVGMVGYCMGSAL 34
V D+ A++ + + +NG KVG+VGY +G AL
Sbjct: 97 VGDLEAAIRYARHQPYSNG--KVGLVGYSLGGAL 128
>pdb|1ZJ5|A Chain A, Crystal Structure Analysis Of The Dienelactone Hydrolase
Mutant (E36d, C123s, A134s, S208g, A229v, K234r) Bound
With The Pms Moiety Of The Protease Inhibitor,
Phenylmethylsulfonyl Fluoride (Pmsf)- 1.7 A
Length = 236
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 6/34 (17%)
Query: 5 VADISASVDWLK----ANGSKKVGMVGYCMGSAL 34
V D+ A++ + + +NG KVG+VGY +G AL
Sbjct: 97 VGDLEAAIRYARHQPYSNG--KVGLVGYXLGGAL 128
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.128 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,339,903
Number of Sequences: 62578
Number of extensions: 32292
Number of successful extensions: 116
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 113
Number of HSP's gapped (non-prelim): 14
length of query: 52
length of database: 14,973,337
effective HSP length: 24
effective length of query: 28
effective length of database: 13,471,465
effective search space: 377201020
effective search space used: 377201020
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)