BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 038643
         (52 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P0A115|CLCD_PSESB Carboxymethylenebutenolidase OS=Pseudomonas sp. (strain B13)
           GN=clcD PE=1 SV=1
          Length = 236

 Score = 31.6 bits (70), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 6/40 (15%)

Query: 5   VADISASVDWLK----ANGSKKVGMVGYCMGSALTIACSA 40
           V D+ A++ + +    +NG  KVG+VGYC+G AL    +A
Sbjct: 97  VGDLEAAIRYARHQPYSNG--KVGLVGYCLGGALAFLVAA 134


>sp|P0A114|CLCD_PSEPU Carboxymethylenebutenolidase OS=Pseudomonas putida GN=clcD PE=1
           SV=1
          Length = 236

 Score = 31.6 bits (70), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 6/40 (15%)

Query: 5   VADISASVDWLK----ANGSKKVGMVGYCMGSALTIACSA 40
           V D+ A++ + +    +NG  KVG+VGYC+G AL    +A
Sbjct: 97  VGDLEAAIRYARHQPYSNG--KVGLVGYCLGGALAFLVAA 134


>sp|B0KGD9|PDXB_PSEPG Erythronate-4-phosphate dehydrogenase OS=Pseudomonas putida (strain
           GB-1) GN=pdxB PE=3 SV=1
          Length = 380

 Score = 29.6 bits (65), Expect = 5.9,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 17/28 (60%)

Query: 10  ASVDWLKANGSKKVGMVGYCMGSALTIA 37
           AS+ W  A G    G+V Y +GS LT+A
Sbjct: 80  ASISWSSAPGCNARGVVDYVLGSLLTLA 107


>sp|P46209|USF_AQUPY Protein usf OS=Aquifex pyrophilus GN=usf PE=4 SV=1
          Length = 231

 Score = 29.3 bits (64), Expect = 6.7,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 3/36 (8%)

Query: 4   VVADISASVDWLKA---NGSKKVGMVGYCMGSALTI 36
           V A   ASVD+LK       KKVG+ G+C G  L++
Sbjct: 90  VDAIFKASVDFLKECRYTSPKKVGVTGFCCGGTLSM 125


>sp|Q884R9|PDXB_PSESM Erythronate-4-phosphate dehydrogenase OS=Pseudomonas syringae pv.
           tomato (strain DC3000) GN=pdxB PE=3 SV=1
          Length = 380

 Score = 29.3 bits (64), Expect = 8.0,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 22/40 (55%)

Query: 10  ASVDWLKANGSKKVGMVGYCMGSALTIACSASLMERKHTF 49
           A++ W  A G    G+V Y +GS LT+A    +  R+ T+
Sbjct: 80  AAIQWSSAPGCNARGVVDYVLGSLLTLAEIEGVDLRQRTY 119


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.128    0.383 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,691,178
Number of Sequences: 539616
Number of extensions: 383837
Number of successful extensions: 1147
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1144
Number of HSP's gapped (non-prelim): 6
length of query: 52
length of database: 191,569,459
effective HSP length: 25
effective length of query: 27
effective length of database: 178,079,059
effective search space: 4808134593
effective search space used: 4808134593
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)