Query 038643
Match_columns 52
No_of_seqs 210 out of 1435
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 13:09:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038643.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038643hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0412 Dienelactone hydrolase 99.2 6.5E-11 1.4E-15 66.1 6.1 49 3-51 91-142 (236)
2 PF00561 Abhydrolase_1: alpha/ 99.2 1E-10 2.2E-15 62.5 6.7 47 5-51 27-74 (230)
3 TIGR03101 hydr2_PEP hydrolase, 99.2 1.7E-10 3.6E-15 65.5 6.8 48 3-50 81-128 (266)
4 PF01738 DLH: Dienelactone hyd 99.2 1.3E-10 2.7E-15 63.3 5.7 50 2-51 76-128 (218)
5 PLN02298 hydrolase, alpha/beta 99.1 3.1E-10 6.8E-15 64.7 6.5 50 2-51 112-164 (330)
6 PLN02824 hydrolase, alpha/beta 99.1 5.1E-10 1.1E-14 62.8 6.1 39 13-51 94-132 (294)
7 PF08840 BAAT_C: BAAT / Acyl-C 99.1 8.1E-10 1.8E-14 60.8 6.6 48 5-52 3-53 (213)
8 PF12697 Abhydrolase_6: Alpha/ 99.1 1.2E-09 2.5E-14 57.5 6.8 44 8-51 53-96 (228)
9 PF00326 Peptidase_S9: Prolyl 99.1 7.5E-10 1.6E-14 60.0 6.0 46 3-48 43-91 (213)
10 TIGR02240 PHA_depoly_arom poly 99.1 3.1E-10 6.6E-15 63.3 4.5 46 3-51 76-121 (276)
11 PRK10749 lysophospholipase L2; 99.1 1E-09 2.2E-14 63.0 6.7 49 3-51 112-161 (330)
12 PRK10673 acyl-CoA esterase; Pr 99.1 5.5E-10 1.2E-14 61.0 5.3 46 3-51 66-111 (255)
13 PHA02857 monoglyceride lipase; 99.1 9.2E-10 2E-14 61.1 6.3 48 4-51 79-127 (276)
14 PLN02965 Probable pheophorbida 99.0 5.5E-10 1.2E-14 61.8 5.0 44 5-51 58-102 (255)
15 PRK10566 esterase; Provisional 99.0 1.3E-09 2.8E-14 59.9 6.4 47 4-50 87-136 (249)
16 PLN02385 hydrolase; alpha/beta 99.0 1.1E-09 2.4E-14 63.1 5.7 48 3-50 141-191 (349)
17 PRK00870 haloalkane dehalogena 99.0 2E-09 4.2E-14 60.8 6.2 42 10-51 104-145 (302)
18 PRK03592 haloalkane dehalogena 99.0 2.5E-09 5.3E-14 60.1 6.3 44 5-51 80-123 (295)
19 PRK13604 luxD acyl transferase 99.0 2.1E-09 4.5E-14 62.3 6.0 39 4-42 91-129 (307)
20 TIGR03343 biphenyl_bphD 2-hydr 99.0 1.7E-09 3.6E-14 59.9 5.0 40 11-50 91-130 (282)
21 TIGR01840 esterase_phb esteras 99.0 2.8E-09 6.1E-14 58.0 5.6 47 4-50 75-124 (212)
22 PRK08775 homoserine O-acetyltr 99.0 2E-09 4.4E-14 62.0 5.1 44 5-51 124-168 (343)
23 TIGR03100 hydr1_PEP hydrolase, 98.9 6.9E-09 1.5E-13 58.5 7.0 49 3-51 80-130 (274)
24 PRK11126 2-succinyl-6-hydroxy- 98.9 5.7E-09 1.2E-13 56.8 6.3 39 13-51 58-97 (242)
25 TIGR01738 bioH putative pimelo 98.9 2.4E-09 5.2E-14 57.1 4.5 44 7-50 51-94 (245)
26 PRK10349 carboxylesterase BioH 98.9 3.3E-09 7.1E-14 58.4 5.1 42 10-51 63-104 (256)
27 PRK07581 hypothetical protein; 98.9 2.5E-09 5.5E-14 61.3 4.8 47 5-51 106-154 (339)
28 TIGR01836 PHA_synth_III_C poly 98.9 5.6E-09 1.2E-13 60.3 6.2 45 6-50 120-165 (350)
29 TIGR01250 pro_imino_pep_2 prol 98.9 6.9E-09 1.5E-13 56.5 5.7 33 19-51 94-126 (288)
30 PLN02211 methyl indole-3-aceta 98.9 9E-09 2E-13 58.0 6.1 45 7-51 72-117 (273)
31 TIGR03611 RutD pyrimidine util 98.9 3.5E-09 7.7E-14 57.1 4.3 43 5-50 67-109 (257)
32 COG2267 PldB Lysophospholipase 98.9 1E-08 2.2E-13 58.9 6.2 49 3-51 88-137 (298)
33 PLN02894 hydrolase, alpha/beta 98.9 7.4E-09 1.6E-13 61.2 5.7 41 11-51 166-206 (402)
34 COG1647 Esterase/lipase [Gener 98.9 1.6E-08 3.4E-13 56.8 6.3 48 3-51 67-114 (243)
35 TIGR01392 homoserO_Ac_trn homo 98.9 8.5E-09 1.8E-13 59.6 5.4 39 13-51 118-157 (351)
36 TIGR00976 /NonD putative hydro 98.9 1E-08 2.2E-13 62.4 5.9 48 3-50 77-126 (550)
37 PLN02578 hydrolase 98.8 1.1E-08 2.4E-13 59.3 5.6 41 10-50 141-181 (354)
38 PLN02511 hydrolase 98.8 1.8E-08 3.9E-13 59.3 6.5 43 3-45 154-197 (388)
39 TIGR02427 protocat_pcaD 3-oxoa 98.8 4.1E-09 8.9E-14 56.3 3.4 42 5-49 66-107 (251)
40 TIGR03695 menH_SHCHC 2-succiny 98.8 2.6E-08 5.6E-13 53.0 6.5 32 19-50 68-99 (251)
41 TIGR03056 bchO_mg_che_rel puta 98.8 1.9E-08 4.1E-13 55.2 5.7 43 4-49 81-123 (278)
42 KOG4409 Predicted hydrolase/ac 98.8 1E-08 2.2E-13 60.3 4.7 40 12-51 151-190 (365)
43 PRK05077 frsA fermentation/res 98.8 2.8E-08 6.1E-13 59.1 6.5 42 8-49 249-293 (414)
44 PRK10985 putative hydrolase; P 98.8 2.8E-08 6E-13 57.1 6.3 48 4-51 113-164 (324)
45 cd00707 Pancreat_lipase_like P 98.8 2.5E-08 5.3E-13 56.7 6.0 46 5-50 93-141 (275)
46 TIGR01249 pro_imino_pep_1 prol 98.8 9.4E-09 2E-13 58.4 4.3 44 5-51 82-125 (306)
47 PRK06489 hypothetical protein; 98.8 1.8E-08 3.8E-13 58.5 5.4 33 18-50 150-183 (360)
48 PF12715 Abhydrolase_7: Abhydr 98.8 1.4E-08 3.1E-13 60.3 4.8 44 5-49 208-254 (390)
49 PRK03204 haloalkane dehalogena 98.8 2.9E-08 6.3E-13 56.0 5.8 33 19-51 99-131 (286)
50 PF09752 DUF2048: Uncharacteri 98.8 4.4E-08 9.6E-13 57.6 6.4 49 3-51 157-205 (348)
51 PRK06765 homoserine O-acetyltr 98.8 2.6E-08 5.6E-13 59.0 5.4 38 13-50 152-190 (389)
52 PLN02679 hydrolase, alpha/beta 98.8 3.2E-08 7E-13 57.6 5.7 39 12-50 146-185 (360)
53 PLN03087 BODYGUARD 1 domain co 98.7 4.4E-08 9.5E-13 59.5 6.1 37 15-51 268-304 (481)
54 PRK11460 putative hydrolase; P 98.7 7.3E-08 1.6E-12 53.4 6.6 42 7-48 86-130 (232)
55 PF12695 Abhydrolase_5: Alpha/ 98.7 1.1E-07 2.3E-12 48.2 6.5 46 6-51 44-91 (145)
56 PRK00175 metX homoserine O-ace 98.7 3.6E-08 7.7E-13 57.8 5.3 39 13-51 138-177 (379)
57 PLN02652 hydrolase; alpha/beta 98.7 1.1E-07 2.4E-12 56.4 6.5 48 3-51 189-240 (395)
58 KOG1455 Lysophospholipase [Lip 98.7 6.1E-08 1.3E-12 56.3 5.1 48 3-50 108-158 (313)
59 KOG1552 Predicted alpha/beta h 98.7 5E-08 1.1E-12 55.5 4.6 47 3-51 110-158 (258)
60 TIGR02821 fghA_ester_D S-formy 98.7 1.3E-07 2.7E-12 53.4 6.0 31 20-50 137-167 (275)
61 PF10503 Esterase_phd: Esteras 98.7 1.2E-07 2.5E-12 52.9 5.7 47 5-51 78-127 (220)
62 PF05448 AXE1: Acetyl xylan es 98.7 1.4E-07 3E-12 54.8 6.2 48 3-50 154-204 (320)
63 COG2945 Predicted hydrolase of 98.7 5.3E-08 1.1E-12 53.8 4.2 44 3-46 83-128 (210)
64 PRK11071 esterase YqiA; Provis 98.7 1.5E-07 3.3E-12 50.9 6.0 30 15-44 55-84 (190)
65 TIGR03230 lipo_lipase lipoprot 98.7 2.1E-07 4.6E-12 56.2 7.0 47 4-50 99-148 (442)
66 PRK14875 acetoin dehydrogenase 98.6 1.4E-07 3E-12 54.1 6.0 38 13-50 189-226 (371)
67 PF02129 Peptidase_S15: X-Pro 98.6 1.9E-07 4.1E-12 52.6 6.2 49 2-50 80-131 (272)
68 KOG2564 Predicted acetyltransf 98.6 8.2E-08 1.8E-12 55.7 4.2 40 2-41 127-166 (343)
69 COG1506 DAP2 Dipeptidyl aminop 98.6 9.5E-08 2.1E-12 59.1 4.8 48 3-50 452-502 (620)
70 KOG3043 Predicted hydrolase re 98.6 1.3E-08 2.8E-13 57.1 0.9 50 3-52 101-151 (242)
71 PLN02442 S-formylglutathione h 98.6 3.9E-07 8.4E-12 51.8 6.5 31 19-49 141-171 (283)
72 TIGR01839 PHA_synth_II poly(R) 98.6 2.3E-07 4.9E-12 57.4 5.9 46 5-50 271-322 (560)
73 PF02230 Abhydrolase_2: Phosph 98.5 6E-07 1.3E-11 49.1 6.4 44 7-50 89-134 (216)
74 PLN02733 phosphatidylcholine-s 98.5 3.1E-07 6.7E-12 55.4 5.4 43 3-45 143-186 (440)
75 PLN02872 triacylglycerol lipas 98.5 3.1E-07 6.8E-12 54.6 5.3 40 4-44 143-182 (395)
76 PLN00021 chlorophyllase 98.5 6.4E-07 1.4E-11 51.9 6.0 41 4-44 98-149 (313)
77 KOG1454 Predicted hydrolase/ac 98.5 5.1E-07 1.1E-11 52.6 5.5 41 10-50 117-157 (326)
78 TIGR01607 PST-A Plasmodium sub 98.5 4.5E-07 9.8E-12 52.5 5.3 41 3-43 103-164 (332)
79 PLN02980 2-oxoglutarate decarb 98.5 3.7E-07 8.1E-12 61.4 5.4 34 17-50 1441-1474(1655)
80 PF07819 PGAP1: PGAP1-like pro 98.5 1E-06 2.2E-11 49.1 6.2 39 4-42 62-106 (225)
81 PLN03084 alpha/beta hydrolase 98.5 5.9E-07 1.3E-11 53.2 5.3 44 5-51 184-227 (383)
82 PF01764 Lipase_3: Lipase (cla 98.5 1.8E-06 3.8E-11 44.1 6.4 23 19-41 62-84 (140)
83 PF06500 DUF1100: Alpha/beta h 98.4 5.6E-07 1.2E-11 54.0 5.1 43 8-50 245-291 (411)
84 PRK07868 acyl-CoA synthetase; 98.4 8.9E-07 1.9E-11 57.1 6.0 42 9-50 129-171 (994)
85 KOG4178 Soluble epoxide hydrol 98.4 7.9E-07 1.7E-11 52.0 5.1 45 3-50 98-142 (322)
86 COG0596 MhpC Predicted hydrola 98.4 9.4E-07 2E-11 46.4 5.0 39 13-51 80-118 (282)
87 TIGR01838 PHA_synth_I poly(R)- 98.4 1.1E-06 2.4E-11 54.1 5.9 45 6-50 246-296 (532)
88 PF00756 Esterase: Putative es 98.4 1.2E-06 2.5E-11 48.3 5.1 40 10-49 101-143 (251)
89 cd00741 Lipase Lipase. Lipase 98.4 3.1E-06 6.6E-11 44.2 6.2 38 6-43 12-50 (153)
90 PF06028 DUF915: Alpha/beta hy 98.4 3.4E-06 7.4E-11 48.0 6.8 40 3-42 84-124 (255)
91 cd00519 Lipase_3 Lipase (class 98.3 2.7E-06 5.8E-11 46.9 5.7 46 6-51 112-163 (229)
92 PRK05371 x-prolyl-dipeptidyl a 98.3 4.2E-06 9.1E-11 53.3 6.6 49 2-50 302-368 (767)
93 KOG1838 Alpha/beta hydrolase [ 98.3 4.9E-06 1.1E-10 50.0 6.2 49 3-51 179-231 (409)
94 PF10230 DUF2305: Uncharacteri 98.3 5.6E-06 1.2E-10 47.0 6.2 42 2-43 62-106 (266)
95 PF05728 UPF0227: Uncharacteri 98.3 5.9E-06 1.3E-10 45.1 5.9 38 13-52 51-88 (187)
96 PF11187 DUF2974: Protein of u 98.3 7.5E-06 1.6E-10 45.8 6.3 43 10-52 70-120 (224)
97 PRK10115 protease 2; Provision 98.2 4.9E-06 1.1E-10 52.4 5.9 48 3-50 503-553 (686)
98 PRK10162 acetyl esterase; Prov 98.2 4.3E-06 9.4E-11 48.2 5.3 39 3-41 130-174 (318)
99 PF07859 Abhydrolase_3: alpha/ 98.2 4.6E-06 1E-10 44.8 4.6 40 2-41 46-91 (211)
100 PF00975 Thioesterase: Thioest 98.2 6.1E-06 1.3E-10 44.8 5.0 32 11-42 55-87 (229)
101 KOG2382 Predicted alpha/beta h 98.2 4.2E-06 9.1E-11 48.9 4.4 48 2-49 103-152 (315)
102 KOG4391 Predicted alpha/beta h 98.2 2.9E-07 6.3E-12 52.2 -0.3 49 2-50 127-178 (300)
103 KOG3724 Negative regulator of 98.2 4E-06 8.7E-11 53.9 4.5 40 2-41 153-202 (973)
104 COG2021 MET2 Homoserine acetyl 98.2 2.6E-06 5.6E-11 50.6 3.4 44 5-48 129-174 (368)
105 PRK10439 enterobactin/ferric e 98.1 9.5E-06 2.1E-10 48.6 5.7 30 20-49 287-316 (411)
106 PF08538 DUF1749: Protein of u 98.1 1.6E-05 3.5E-10 46.3 6.1 41 2-42 84-129 (303)
107 COG3208 GrsT Predicted thioest 98.1 4.8E-06 1E-10 47.2 3.7 41 2-42 50-95 (244)
108 COG0429 Predicted hydrolase of 98.1 1.9E-05 4.2E-10 46.6 5.6 39 3-41 129-169 (345)
109 PRK05855 short chain dehydroge 98.0 9.5E-06 2.1E-10 48.8 3.9 37 3-41 78-114 (582)
110 PF01674 Lipase_2: Lipase (cla 98.0 2.1E-05 4.6E-10 43.9 5.0 36 4-40 58-94 (219)
111 PF02450 LCAT: Lecithin:choles 98.0 1.8E-05 3.9E-10 47.0 4.8 40 4-43 102-141 (389)
112 PRK04940 hypothetical protein; 98.0 5.3E-05 1.1E-09 41.4 6.0 30 21-52 60-89 (180)
113 KOG2984 Predicted hydrolase [G 98.0 1.3E-06 2.8E-11 49.1 -0.4 47 3-49 96-142 (277)
114 PF03403 PAF-AH_p_II: Platelet 97.9 1.7E-05 3.6E-10 47.2 4.0 31 21-51 228-258 (379)
115 PF05677 DUF818: Chlamydia CHL 97.9 3.1E-05 6.7E-10 46.0 4.8 40 2-41 192-235 (365)
116 COG3243 PhaC Poly(3-hydroxyalk 97.9 2.8E-05 6E-10 47.2 4.4 45 6-50 165-211 (445)
117 COG3509 LpqC Poly(3-hydroxybut 97.9 6.5E-05 1.4E-09 43.9 5.4 47 4-50 124-173 (312)
118 PF05577 Peptidase_S28: Serine 97.9 0.00011 2.5E-09 43.8 6.6 47 2-48 90-140 (434)
119 PLN02454 triacylglycerol lipas 97.8 7.1E-05 1.5E-09 45.3 5.3 38 4-41 208-248 (414)
120 PLN02310 triacylglycerol lipas 97.8 5E-05 1.1E-09 45.8 4.5 21 20-40 208-228 (405)
121 PLN03037 lipase class 3 family 97.8 4.7E-05 1E-09 47.1 4.3 36 5-40 301-337 (525)
122 KOG2281 Dipeptidyl aminopeptid 97.8 3.5E-05 7.5E-10 49.1 3.6 44 5-48 707-754 (867)
123 PF11288 DUF3089: Protein of u 97.8 0.00011 2.4E-09 40.9 5.2 39 3-41 75-115 (207)
124 COG0400 Predicted esterase [Ge 97.8 9.2E-05 2E-09 41.1 4.9 29 20-48 98-126 (207)
125 PLN02162 triacylglycerol lipas 97.8 9.6E-05 2.1E-09 45.3 5.2 33 8-40 264-297 (475)
126 COG2936 Predicted acyl esteras 97.8 5.2E-05 1.1E-09 47.3 4.1 45 4-48 105-151 (563)
127 COG3458 Acetyl esterase (deace 97.8 1.7E-05 3.7E-10 46.1 1.9 47 4-50 156-205 (321)
128 COG3319 Thioesterase domains o 97.7 6.8E-05 1.5E-09 42.8 4.2 31 12-42 55-86 (257)
129 PF05990 DUF900: Alpha/beta hy 97.7 0.00017 3.7E-09 40.4 5.6 37 5-41 76-113 (233)
130 COG0657 Aes Esterase/lipase [L 97.7 8.1E-05 1.8E-09 42.5 4.3 40 3-42 128-173 (312)
131 KOG2183 Prolylcarboxypeptidase 97.7 7.4E-05 1.6E-09 45.5 4.2 46 2-47 145-193 (492)
132 KOG2100 Dipeptidyl aminopeptid 97.7 9.8E-05 2.1E-09 47.2 4.9 42 3-44 587-631 (755)
133 PLN00413 triacylglycerol lipas 97.7 0.0001 2.3E-09 45.2 4.8 33 8-40 270-303 (479)
134 PF06057 VirJ: Bacterial virul 97.7 0.00011 2.3E-09 40.6 4.4 43 2-44 48-91 (192)
135 PLN02571 triacylglycerol lipas 97.7 8E-05 1.7E-09 45.0 4.1 20 22-41 227-246 (413)
136 KOG1553 Predicted alpha/beta h 97.7 0.00011 2.4E-09 44.3 4.4 44 6-49 293-339 (517)
137 PLN02934 triacylglycerol lipas 97.6 0.00016 3.5E-09 44.7 5.0 33 8-40 307-340 (515)
138 COG0627 Predicted esterase [Ge 97.6 4.1E-05 8.9E-10 44.8 2.2 27 22-48 153-179 (316)
139 PF05057 DUF676: Putative seri 97.6 9.7E-05 2.1E-09 40.8 3.4 20 21-40 78-97 (217)
140 PF00151 Lipase: Lipase; Inte 97.6 0.00031 6.8E-09 41.3 5.7 40 5-44 131-173 (331)
141 PF07224 Chlorophyllase: Chlor 97.6 0.00013 2.8E-09 42.4 3.9 41 3-43 91-142 (307)
142 PF01083 Cutinase: Cutinase; 97.6 0.00044 9.6E-09 37.4 5.7 36 6-41 65-101 (179)
143 COG2819 Predicted hydrolase of 97.6 0.00018 3.9E-09 41.4 4.2 30 20-49 136-165 (264)
144 PF12740 Chlorophyllase2: Chlo 97.5 0.00042 9.1E-09 39.8 5.4 40 3-42 62-112 (259)
145 TIGR01849 PHB_depoly_PhaZ poly 97.5 0.00039 8.5E-09 42.0 5.4 37 13-50 161-202 (406)
146 PF06821 Ser_hydrolase: Serine 97.5 0.0013 2.7E-08 35.5 6.8 43 8-50 39-85 (171)
147 PLN02408 phospholipase A1 97.5 0.00021 4.4E-09 42.7 4.1 21 21-41 200-220 (365)
148 COG4814 Uncharacterized protei 97.5 0.00024 5.3E-09 41.0 4.2 38 5-42 119-157 (288)
149 COG4188 Predicted dienelactone 97.5 0.00014 3E-09 43.4 3.3 40 4-43 132-181 (365)
150 TIGR03502 lipase_Pla1_cef extr 97.5 0.00037 8.1E-09 45.0 5.2 40 2-41 523-575 (792)
151 PLN02753 triacylglycerol lipas 97.5 0.00028 6E-09 43.9 4.3 20 21-40 312-331 (531)
152 KOG2369 Lecithin:cholesterol a 97.5 0.00034 7.3E-09 43.0 4.6 40 5-44 165-205 (473)
153 PLN02324 triacylglycerol lipas 97.4 0.00025 5.5E-09 43.0 3.9 20 21-40 215-234 (415)
154 COG4782 Uncharacterized protei 97.4 0.00073 1.6E-08 40.5 5.4 37 3-39 172-209 (377)
155 COG4099 Predicted peptidase [G 97.4 0.00037 8.1E-09 41.3 4.0 32 20-51 268-300 (387)
156 PF11339 DUF3141: Protein of u 97.4 0.00072 1.6E-08 42.3 5.3 32 21-52 140-171 (581)
157 PLN02761 lipase class 3 family 97.4 0.00043 9.2E-09 43.0 4.3 20 21-40 294-313 (527)
158 PLN02719 triacylglycerol lipas 97.3 0.00078 1.7E-08 41.8 4.9 20 21-40 298-317 (518)
159 PLN02802 triacylglycerol lipas 97.3 0.00045 9.7E-09 42.8 3.9 21 21-41 330-350 (509)
160 COG1075 LipA Predicted acetylt 97.3 0.0008 1.7E-08 39.5 4.7 25 19-43 125-149 (336)
161 PF12048 DUF3530: Protein of u 97.3 0.0026 5.6E-08 37.1 6.7 42 3-44 175-216 (310)
162 PF06259 Abhydrolase_8: Alpha/ 97.3 0.0021 4.6E-08 35.0 5.9 37 5-41 91-129 (177)
163 PRK10252 entF enterobactin syn 97.2 0.0013 2.7E-08 43.3 5.7 30 20-49 1132-1164(1296)
164 cd00312 Esterase_lipase Estera 97.2 0.00089 1.9E-08 40.3 4.7 38 4-41 153-196 (493)
165 PLN02517 phosphatidylcholine-s 97.2 0.00099 2.2E-08 42.2 4.7 36 5-40 196-232 (642)
166 PF03959 FSH1: Serine hydrolas 97.2 0.0021 4.5E-08 35.3 5.5 35 6-41 84-122 (212)
167 smart00824 PKS_TE Thioesterase 97.2 0.0041 8.8E-08 32.7 6.3 22 20-41 63-84 (212)
168 KOG3847 Phospholipase A2 (plat 97.1 0.00026 5.7E-09 42.1 1.7 31 21-51 241-271 (399)
169 KOG4569 Predicted lipase [Lipi 97.1 0.0013 2.7E-08 38.7 4.5 34 8-41 157-191 (336)
170 PLN02847 triacylglycerol lipas 97.1 0.0013 2.8E-08 41.6 4.6 23 19-41 249-271 (633)
171 KOG2624 Triglyceride lipase-ch 97.1 0.00055 1.2E-08 41.3 2.6 43 2-44 141-184 (403)
172 KOG2112 Lysophospholipase [Lip 97.0 0.0026 5.6E-08 35.5 4.7 41 8-48 78-120 (206)
173 KOG4667 Predicted esterase [Li 97.0 0.0021 4.5E-08 36.7 4.3 43 4-46 88-130 (269)
174 KOG3101 Esterase D [General fu 97.0 4.8E-05 1E-09 43.2 -2.2 30 20-49 140-169 (283)
175 PF00135 COesterase: Carboxyle 96.9 0.0023 5E-08 38.4 4.5 38 4-41 185-228 (535)
176 PF06342 DUF1057: Alpha/beta h 96.9 0.0037 7.9E-08 36.6 5.0 31 20-51 103-133 (297)
177 KOG1551 Uncharacterized conser 96.9 0.0009 1.9E-08 39.3 2.5 33 19-51 193-225 (371)
178 PTZ00472 serine carboxypeptida 96.9 0.004 8.6E-08 38.1 5.1 40 2-41 148-191 (462)
179 COG2382 Fes Enterochelin ester 96.8 0.003 6.4E-08 37.0 4.2 30 21-50 177-206 (299)
180 COG1770 PtrB Protease II [Amin 96.8 0.0028 6.2E-08 40.5 4.1 46 4-49 507-555 (682)
181 KOG2237 Predicted serine prote 96.7 0.0013 2.9E-08 41.9 2.4 47 4-50 529-578 (712)
182 PF07082 DUF1350: Protein of u 96.7 0.0091 2E-07 34.3 5.3 49 4-52 68-124 (250)
183 COG4757 Predicted alpha/beta h 96.7 0.0017 3.7E-08 37.4 2.3 39 4-43 87-126 (281)
184 KOG4627 Kynurenine formamidase 96.6 0.0027 6E-08 36.1 2.7 41 1-41 114-156 (270)
185 PF11144 DUF2920: Protein of u 96.5 0.021 4.5E-07 34.8 6.1 47 4-50 162-213 (403)
186 COG3545 Predicted esterase of 96.4 0.027 6E-07 31.0 5.7 29 20-48 58-86 (181)
187 COG5153 CVT17 Putative lipase 96.3 0.015 3.2E-07 34.7 4.8 24 19-42 274-297 (425)
188 KOG4540 Putative lipase essent 96.3 0.015 3.2E-07 34.7 4.8 24 19-42 274-297 (425)
189 KOG1516 Carboxylesterase and r 96.2 0.013 2.8E-07 35.9 4.5 36 5-40 173-214 (545)
190 PF02273 Acyl_transf_2: Acyl t 96.2 0.026 5.7E-07 32.9 5.3 39 3-41 83-121 (294)
191 COG3150 Predicted esterase [Ge 96.2 0.014 3E-07 32.2 4.0 23 20-42 58-80 (191)
192 PF05277 DUF726: Protein of un 96.1 0.023 5E-07 33.9 5.1 31 13-43 210-242 (345)
193 COG3946 VirJ Type IV secretory 96.1 0.0097 2.1E-07 36.5 3.4 33 2-34 306-339 (456)
194 KOG1515 Arylacetamide deacetyl 96.0 0.016 3.5E-07 34.4 4.1 39 3-41 141-186 (336)
195 PF04301 DUF452: Protein of un 96.0 0.016 3.6E-07 32.5 3.7 32 20-52 56-87 (213)
196 PF03583 LIP: Secretory lipase 95.9 0.017 3.7E-07 33.4 3.7 21 20-40 70-90 (290)
197 COG3673 Uncharacterized conser 95.8 0.04 8.6E-07 33.3 5.1 39 3-41 102-142 (423)
198 KOG3975 Uncharacterized conser 95.8 0.031 6.8E-07 32.6 4.5 35 6-40 93-129 (301)
199 PF09994 DUF2235: Uncharacteri 95.8 0.034 7.3E-07 32.0 4.6 38 4-41 73-112 (277)
200 PF03096 Ndr: Ndr family; Int 95.8 0.064 1.4E-06 31.4 5.6 47 2-51 83-129 (283)
201 COG2272 PnbA Carboxylesterase 95.7 0.029 6.3E-07 35.0 4.4 38 4-41 157-200 (491)
202 PF08237 PE-PPE: PE-PPE domain 95.7 0.082 1.8E-06 29.8 5.8 23 19-41 46-68 (225)
203 COG1505 Serine proteases of th 95.7 0.0011 2.4E-08 41.9 -1.7 48 3-50 479-529 (648)
204 KOG2931 Differentiation-relate 95.7 0.039 8.4E-07 32.7 4.5 47 2-51 106-152 (326)
205 COG3571 Predicted hydrolase of 95.6 0.043 9.4E-07 30.3 4.3 24 20-43 88-111 (213)
206 PLN02606 palmitoyl-protein thi 95.5 0.12 2.6E-06 30.6 6.1 39 6-44 78-118 (306)
207 PLN02633 palmitoyl protein thi 95.5 0.11 2.4E-06 30.8 6.0 38 7-44 78-117 (314)
208 PF10340 DUF2424: Protein of u 95.2 0.08 1.7E-06 32.1 5.0 39 3-41 176-215 (374)
209 PF02089 Palm_thioest: Palmito 95.1 0.25 5.4E-06 28.9 6.6 36 9-44 66-103 (279)
210 KOG2029 Uncharacterized conser 94.8 0.07 1.5E-06 34.3 4.0 31 9-39 511-544 (697)
211 KOG4840 Predicted hydrolases o 94.5 0.092 2E-06 30.4 3.8 38 2-39 87-125 (299)
212 KOG2541 Palmitoyl protein thio 94.5 0.23 5E-06 29.3 5.5 38 5-42 74-113 (296)
213 KOG2182 Hydrolytic enzymes of 94.2 0.19 4E-06 31.7 4.8 47 2-48 149-199 (514)
214 PF00450 Peptidase_S10: Serine 93.8 0.39 8.5E-06 28.3 5.7 39 3-41 114-156 (415)
215 PF10142 PhoPQ_related: PhoPQ- 93.6 0.41 8.9E-06 29.0 5.5 47 5-51 153-202 (367)
216 smart00827 PKS_AT Acyl transfe 93.4 0.21 4.5E-06 28.4 3.9 29 12-40 73-101 (298)
217 PF00698 Acyl_transf_1: Acyl t 93.4 0.1 2.2E-06 30.2 2.7 30 11-40 74-103 (318)
218 cd07198 Patatin Patatin-like p 93.3 0.29 6.3E-06 26.0 4.2 34 10-43 15-48 (172)
219 cd07225 Pat_PNPLA6_PNPLA7 Pata 93.2 0.27 5.8E-06 28.8 4.2 33 10-42 32-64 (306)
220 cd07207 Pat_ExoU_VipD_like Exo 93.2 0.34 7.4E-06 25.9 4.4 33 10-42 16-48 (194)
221 PRK10279 hypothetical protein; 93.1 0.27 5.9E-06 28.8 4.1 33 10-42 22-54 (300)
222 PF03283 PAE: Pectinacetyleste 93.1 0.28 6.2E-06 29.4 4.3 34 6-39 138-174 (361)
223 TIGR03131 malonate_mdcH malona 93.0 0.27 5.9E-06 28.1 4.0 28 13-40 68-95 (295)
224 TIGR03712 acc_sec_asp2 accesso 92.9 0.16 3.5E-06 31.9 3.2 36 6-42 343-378 (511)
225 KOG2565 Predicted hydrolases o 92.9 0.2 4.4E-06 30.9 3.5 42 11-52 219-260 (469)
226 PF12242 Eno-Rase_NADH_b: NAD( 92.9 0.56 1.2E-05 22.6 5.3 39 4-42 19-61 (78)
227 cd07210 Pat_hypo_W_succinogene 92.8 0.41 8.9E-06 26.7 4.5 33 10-42 17-49 (221)
228 PF07519 Tannase: Tannase and 91.9 0.6 1.3E-05 29.0 4.7 31 20-50 114-144 (474)
229 cd07209 Pat_hypo_Ecoli_Z1214_l 91.7 0.55 1.2E-05 25.9 4.1 34 10-43 15-48 (215)
230 KOG2551 Phospholipase/carboxyh 91.6 0.36 7.8E-06 27.6 3.3 32 8-40 92-123 (230)
231 cd07228 Pat_NTE_like_bacteria 91.5 0.7 1.5E-05 24.6 4.3 34 10-43 17-50 (175)
232 cd07227 Pat_Fungal_NTE1 Fungal 91.4 0.63 1.4E-05 26.9 4.2 32 10-41 27-58 (269)
233 cd07205 Pat_PNPLA6_PNPLA7_NTE1 91.4 0.83 1.8E-05 24.2 4.5 33 10-42 17-49 (175)
234 COG1752 RssA Predicted esteras 91.3 0.59 1.3E-05 27.1 4.1 32 11-42 29-60 (306)
235 TIGR00128 fabD malonyl CoA-acy 91.2 0.53 1.1E-05 26.6 3.8 28 13-40 74-102 (290)
236 PLN02213 sinapoylglucose-malat 91.0 0.93 2E-05 26.6 4.7 38 4-41 30-71 (319)
237 KOG3967 Uncharacterized conser 91.0 1.1 2.3E-05 26.1 4.8 26 20-45 189-214 (297)
238 KOG2385 Uncharacterized conser 90.7 0.85 1.8E-05 29.3 4.5 22 19-40 445-466 (633)
239 PRK05368 homoserine O-succinyl 90.4 0.79 1.7E-05 27.1 4.1 32 5-39 121-152 (302)
240 COG4947 Uncharacterized protei 90.3 0.2 4.3E-06 28.1 1.5 37 10-46 89-126 (227)
241 PLN02209 serine carboxypeptida 90.1 0.71 1.5E-05 28.4 3.8 39 3-41 145-187 (437)
242 cd07208 Pat_hypo_Ecoli_yjju_li 89.9 1 2.3E-05 25.4 4.2 34 10-43 15-49 (266)
243 cd03131 GATase1_HTS Type 1 glu 89.5 0.37 7.9E-06 26.4 2.1 34 4-40 83-116 (175)
244 cd07230 Pat_TGL4-5_like Triacy 89.3 0.77 1.7E-05 28.2 3.5 35 10-44 90-124 (421)
245 cd07224 Pat_like Patatin-like 89.2 1.3 2.9E-05 24.9 4.2 34 10-43 16-51 (233)
246 cd07212 Pat_PNPLA9 Patatin-lik 89.1 1 2.3E-05 26.4 3.9 19 24-42 35-53 (312)
247 KOG4372 Predicted alpha/beta h 89.0 0.18 3.9E-06 30.9 0.7 18 20-37 149-166 (405)
248 PLN03016 sinapoylglucose-malat 88.9 0.89 1.9E-05 28.0 3.6 36 6-41 146-185 (433)
249 PF05576 Peptidase_S37: PS-10 88.6 0.13 2.8E-06 31.8 -0.0 47 2-48 115-161 (448)
250 PF04263 TPK_catalytic: Thiami 86.1 0.65 1.4E-05 23.9 1.7 36 2-38 67-102 (123)
251 cd07232 Pat_PLPL Patain-like p 86.0 1.5 3.2E-05 26.9 3.4 34 10-43 84-117 (407)
252 PF14253 AbiH: Bacteriophage a 85.1 0.98 2.1E-05 25.4 2.3 14 20-33 234-247 (270)
253 cd07204 Pat_PNPLA_like Patatin 85.1 3.1 6.7E-05 23.6 4.2 34 10-43 16-53 (243)
254 cd07229 Pat_TGL3_like Triacylg 85.1 2 4.3E-05 26.4 3.6 33 10-42 100-132 (391)
255 cd07222 Pat_PNPLA4 Patatin-lik 84.4 2.8 6E-05 23.8 3.8 31 10-40 16-50 (246)
256 KOG3253 Predicted alpha/beta h 84.3 0.74 1.6E-05 30.1 1.6 24 20-43 249-272 (784)
257 cd07211 Pat_PNPLA8 Patatin-lik 83.9 2.2 4.7E-05 24.8 3.3 17 24-40 44-60 (308)
258 cd07220 Pat_PNPLA2 Patatin-lik 83.4 3.6 7.9E-05 23.6 4.1 34 10-43 21-58 (249)
259 PRK05809 3-hydroxybutyryl-CoA 83.2 4.9 0.00011 22.8 4.5 18 24-41 103-120 (260)
260 PF04204 HTS: Homoserine O-suc 83.1 5.6 0.00012 23.7 4.8 33 4-39 119-151 (298)
261 PF00378 ECH: Enoyl-CoA hydrat 83.0 4 8.7E-05 22.8 4.1 35 6-41 77-113 (245)
262 cd07218 Pat_iPLA2 Calcium-inde 82.8 3.9 8.4E-05 23.3 4.0 34 10-43 17-52 (245)
263 COG0331 FabD (acyl-carrier-pro 82.6 2.5 5.5E-05 25.0 3.3 28 13-40 75-104 (310)
264 PRK08139 enoyl-CoA hydratase; 82.5 7 0.00015 22.3 5.0 17 25-41 111-127 (266)
265 PRK08150 enoyl-CoA hydratase; 82.2 5.6 0.00012 22.6 4.5 18 24-41 98-115 (255)
266 PRK09076 enoyl-CoA hydratase; 82.2 6 0.00013 22.4 4.6 18 24-41 101-118 (258)
267 PRK05981 enoyl-CoA hydratase; 82.2 6.4 0.00014 22.4 4.8 18 24-41 109-126 (266)
268 cd07221 Pat_PNPLA3 Patatin-lik 81.7 4.7 0.0001 23.1 4.1 34 10-43 17-54 (252)
269 PHA01735 hypothetical protein 81.6 1.9 4.1E-05 20.5 2.1 26 2-27 29-54 (76)
270 PF10081 Abhydrolase_9: Alpha/ 81.3 2.1 4.6E-05 25.3 2.6 31 8-38 93-126 (289)
271 PLN02851 3-hydroxyisobutyryl-C 81.3 5.3 0.00011 24.6 4.4 19 24-42 144-162 (407)
272 COG0084 TatD Mg-dependent DNas 81.2 8.4 0.00018 22.3 5.6 48 5-52 16-64 (256)
273 PRK06142 enoyl-CoA hydratase; 81.1 5.3 0.00012 22.8 4.2 18 24-41 115-132 (272)
274 cd07231 Pat_SDP1-like Sugar-De 81.1 3.6 7.9E-05 24.7 3.6 33 10-42 85-117 (323)
275 TIGR02802 Pal_lipo peptidoglyc 81.0 4.9 0.00011 19.5 4.2 27 3-29 14-40 (104)
276 cd07995 TPK Thiamine pyrophosp 80.7 2.1 4.6E-05 23.6 2.4 34 3-37 74-107 (208)
277 cd07206 Pat_TGL3-4-5_SDP1 Tria 80.2 5.5 0.00012 23.7 4.1 33 10-42 86-118 (298)
278 cd01819 Patatin_and_cPLA2 Pata 80.2 5.9 0.00013 20.8 3.9 30 10-39 15-46 (155)
279 COG1564 THI80 Thiamine pyropho 80.1 3.6 7.8E-05 23.3 3.2 36 2-38 74-109 (212)
280 KOG1282 Serine carboxypeptidas 80.1 3.2 7E-05 26.0 3.3 39 3-41 146-188 (454)
281 PRK06143 enoyl-CoA hydratase; 80.1 7 0.00015 22.2 4.4 18 24-41 106-123 (256)
282 TIGR03189 dienoyl_CoA_hyt cycl 79.9 7.4 0.00016 22.1 4.5 18 24-41 95-112 (251)
283 PRK10802 peptidoglycan-associa 79.7 7.4 0.00016 21.1 4.3 27 3-29 83-109 (173)
284 PRK08272 enoyl-CoA hydratase; 79.7 7.9 0.00017 22.5 4.6 18 24-41 133-150 (302)
285 PRK05980 enoyl-CoA hydratase; 79.7 7.1 0.00015 22.1 4.4 18 24-41 106-123 (260)
286 PRK08138 enoyl-CoA hydratase; 79.4 8.1 0.00017 22.0 4.6 18 24-41 104-121 (261)
287 PRK06688 enoyl-CoA hydratase; 79.4 7.6 0.00016 21.9 4.4 19 24-42 102-120 (259)
288 TIGR01378 thi_PPkinase thiamin 79.3 2.3 5E-05 23.5 2.3 33 2-35 69-101 (203)
289 PRK05864 enoyl-CoA hydratase; 79.1 8.3 0.00018 22.1 4.6 18 24-41 115-132 (276)
290 PRK07854 enoyl-CoA hydratase; 79.0 7.3 0.00016 22.0 4.3 18 24-41 92-109 (243)
291 PRK07511 enoyl-CoA hydratase; 79.0 8 0.00017 21.9 4.5 18 24-41 104-121 (260)
292 PRK07260 enoyl-CoA hydratase; 78.9 7.7 0.00017 21.9 4.4 18 24-41 104-121 (255)
293 PRK06072 enoyl-CoA hydratase; 78.8 9.5 0.00021 21.5 4.8 18 24-41 95-112 (248)
294 PRK07827 enoyl-CoA hydratase; 78.7 6.4 0.00014 22.3 4.0 18 24-41 107-124 (260)
295 PLN02664 enoyl-CoA hydratase/d 78.7 7.2 0.00016 22.4 4.2 18 24-41 117-134 (275)
296 COG3007 Uncharacterized paraqu 78.5 9.7 0.00021 23.2 4.7 37 6-42 22-63 (398)
297 PRK07327 enoyl-CoA hydratase; 78.4 6.7 0.00015 22.4 4.1 18 24-41 112-129 (268)
298 TIGR03210 badI 2-ketocyclohexa 78.3 7.2 0.00016 22.1 4.1 18 24-41 100-117 (256)
299 PRK07657 enoyl-CoA hydratase; 78.3 8.9 0.00019 21.7 4.5 18 24-41 103-120 (260)
300 PF01734 Patatin: Patatin-like 78.1 5.9 0.00013 20.2 3.5 19 23-41 29-47 (204)
301 PRK07468 enoyl-CoA hydratase; 78.0 9.5 0.00021 21.7 4.6 18 24-41 106-123 (262)
302 PRK08258 enoyl-CoA hydratase; 77.8 10 0.00022 21.8 4.7 18 24-41 119-136 (277)
303 PRK09245 enoyl-CoA hydratase; 77.2 10 0.00022 21.6 4.5 18 24-41 109-126 (266)
304 PRK06210 enoyl-CoA hydratase; 77.2 7.4 0.00016 22.2 4.0 18 24-41 114-131 (272)
305 PLN02157 3-hydroxyisobutyryl-C 77.0 8.3 0.00018 23.7 4.3 19 24-42 139-157 (401)
306 PRK07658 enoyl-CoA hydratase; 76.8 11 0.00024 21.3 4.6 18 24-41 100-117 (257)
307 PRK06495 enoyl-CoA hydratase; 76.8 11 0.00023 21.4 4.5 18 24-41 103-120 (257)
308 PLN02600 enoyl-CoA hydratase 76.6 10 0.00022 21.4 4.4 18 24-41 94-111 (251)
309 COG2885 OmpA Outer membrane pr 76.4 8.4 0.00018 20.8 3.9 27 3-29 97-123 (190)
310 PRK05869 enoyl-CoA hydratase; 76.2 11 0.00024 21.0 4.7 18 24-41 105-122 (222)
311 TIGR02816 pfaB_fam PfaB family 76.0 6.6 0.00014 25.1 3.8 25 17-41 261-285 (538)
312 PLN02267 enoyl-CoA hydratase/i 75.9 12 0.00026 21.1 4.6 18 24-41 100-117 (239)
313 PRK05995 enoyl-CoA hydratase; 75.5 9.8 0.00021 21.6 4.2 18 24-41 105-122 (262)
314 PRK09120 p-hydroxycinnamoyl Co 75.3 12 0.00025 21.6 4.5 18 24-41 110-127 (275)
315 COG4425 Predicted membrane pro 75.2 3.4 7.3E-05 26.4 2.4 30 8-37 381-413 (588)
316 PRK13512 coenzyme A disulfide 74.9 8.2 0.00018 23.5 3.9 34 5-41 133-166 (438)
317 cd07217 Pat17_PNPLA8_PNPLA9_li 74.6 4.3 9.4E-05 24.3 2.7 18 24-41 44-61 (344)
318 TIGR03222 benzo_boxC benzoyl-C 74.2 12 0.00027 24.0 4.7 29 12-40 358-389 (546)
319 PRK08260 enoyl-CoA hydratase; 73.9 9.3 0.0002 22.2 3.9 18 24-41 119-136 (296)
320 COG2830 Uncharacterized protei 73.4 2.6 5.7E-05 23.5 1.5 32 20-52 56-87 (214)
321 PRK05870 enoyl-CoA hydratase; 73.4 14 0.00031 20.8 4.5 18 24-41 101-118 (249)
322 PRK06144 enoyl-CoA hydratase; 73.3 13 0.00028 21.1 4.3 18 24-41 108-125 (262)
323 PRK07938 enoyl-CoA hydratase; 73.3 10 0.00022 21.4 3.9 18 24-41 100-117 (249)
324 PRK06213 enoyl-CoA hydratase; 73.2 14 0.0003 20.6 4.6 19 24-42 97-115 (229)
325 COG2453 CDC14 Predicted protei 73.2 3.4 7.3E-05 22.3 1.9 27 5-32 88-115 (180)
326 PRK08290 enoyl-CoA hydratase; 73.1 16 0.00034 21.2 4.8 18 24-41 124-141 (288)
327 PRK09967 putative outer membra 73.0 12 0.00027 20.0 4.2 28 3-30 66-93 (160)
328 PRK06023 enoyl-CoA hydratase; 73.0 13 0.00028 21.0 4.2 18 24-41 103-120 (251)
329 PF05705 DUF829: Eukaryotic pr 72.9 14 0.0003 20.5 4.7 31 9-39 52-85 (240)
330 PRK05862 enoyl-CoA hydratase; 72.6 15 0.00033 20.8 4.8 19 24-42 100-118 (257)
331 PRK05617 3-hydroxyisobutyryl-C 72.5 11 0.00024 22.5 4.0 18 24-41 106-123 (342)
332 TIGR01929 menB naphthoate synt 72.5 12 0.00025 21.3 4.0 18 24-41 103-120 (259)
333 PRK07659 enoyl-CoA hydratase; 72.4 15 0.00032 20.9 4.4 18 24-41 104-121 (260)
334 cd07213 Pat17_PNPLA8_PNPLA9_li 72.3 5.3 0.00011 23.1 2.6 32 11-42 20-55 (288)
335 cd06558 crotonase-like Crotona 72.3 13 0.00027 19.8 4.5 33 9-41 83-116 (195)
336 PLN02752 [acyl-carrier protein 72.2 4 8.7E-05 24.0 2.1 17 24-40 127-143 (343)
337 PRK11423 methylmalonyl-CoA dec 72.0 16 0.00035 20.8 4.7 18 24-41 102-119 (261)
338 PLN02988 3-hydroxyisobutyryl-C 71.4 11 0.00024 23.0 3.9 19 24-42 111-129 (381)
339 cd05015 SIS_PGI_1 Phosphogluco 71.3 9 0.00019 20.2 3.2 25 3-27 2-27 (158)
340 TIGR02437 FadB fatty oxidation 70.9 15 0.00032 24.3 4.5 19 24-42 108-126 (714)
341 PRK06127 enoyl-CoA hydratase; 70.8 17 0.00038 20.7 4.6 18 24-41 112-129 (269)
342 PRK05674 gamma-carboxygeranoyl 70.6 11 0.00024 21.5 3.6 18 24-41 107-124 (265)
343 KOG1202 Animal-type fatty acid 70.6 14 0.00029 27.0 4.4 30 13-42 2173-2203(2376)
344 PRK07110 polyketide biosynthes 70.4 9.1 0.0002 21.6 3.3 18 24-41 100-117 (249)
345 PRK07112 polyketide biosynthes 70.1 11 0.00024 21.4 3.6 18 24-41 102-119 (255)
346 COG3887 Predicted signaling pr 70.0 29 0.00063 23.0 5.7 36 6-42 324-365 (655)
347 cd07219 Pat_PNPLA1 Patatin-lik 69.8 13 0.00028 23.0 3.9 32 10-41 29-64 (382)
348 PRK08184 benzoyl-CoA-dihydrodi 69.8 17 0.00037 23.4 4.6 27 14-40 364-393 (550)
349 PRK06190 enoyl-CoA hydratase; 69.6 13 0.00029 21.2 3.8 18 24-41 100-117 (258)
350 PRK14194 bifunctional 5,10-met 69.2 15 0.00032 21.9 4.0 33 9-41 144-182 (301)
351 TIGR02280 PaaB1 phenylacetate 69.0 19 0.0004 20.4 4.7 18 24-41 99-116 (256)
352 PF08250 Sperm_act_pep: Sperm- 68.8 0.9 2E-05 13.7 -0.6 6 27-32 1-6 (10)
353 COG2939 Carboxypeptidase C (ca 68.6 8.3 0.00018 24.6 3.0 39 3-41 174-218 (498)
354 COG1024 CaiD Enoyl-CoA hydrata 68.3 13 0.00028 21.0 3.6 30 11-41 90-121 (257)
355 PLN02874 3-hydroxyisobutyryl-C 68.1 15 0.00033 22.3 4.0 18 24-41 111-128 (379)
356 cd07020 Clp_protease_NfeD_1 No 68.0 17 0.00038 19.6 4.1 15 27-41 70-84 (187)
357 COG4287 PqaA PhoPQ-activated p 67.6 9.7 0.00021 23.9 3.1 40 12-51 225-264 (507)
358 TIGR02441 fa_ox_alpha_mit fatt 67.5 19 0.00041 23.9 4.5 19 24-42 114-132 (737)
359 TIGR03200 dearomat_oah 6-oxocy 67.2 23 0.0005 21.7 4.6 18 24-41 130-147 (360)
360 PLN03214 probable enoyl-CoA hy 67.0 21 0.00046 20.6 4.3 19 24-42 113-131 (278)
361 TIGR01001 metA homoserine O-su 66.9 6.5 0.00014 23.5 2.2 33 4-39 120-152 (300)
362 PRK07509 enoyl-CoA hydratase; 66.5 14 0.00031 20.9 3.5 18 24-41 108-125 (262)
363 KOG4388 Hormone-sensitive lipa 66.4 4.4 9.6E-05 26.8 1.6 38 3-40 445-488 (880)
364 COG0813 DeoD Purine-nucleoside 66.0 3.2 6.9E-05 23.9 0.8 28 5-32 40-67 (236)
365 PF00691 OmpA: OmpA family; I 65.7 13 0.00029 17.5 4.0 28 3-31 12-41 (97)
366 PRK08140 enoyl-CoA hydratase; 65.4 23 0.0005 20.1 4.7 18 24-41 105-122 (262)
367 cd07185 OmpA_C-like Peptidogly 64.9 14 0.00031 17.5 4.3 28 4-31 17-44 (106)
368 PRK11557 putative DNA-binding 64.7 24 0.00052 20.0 4.6 34 6-41 116-149 (278)
369 PRK09674 enoyl-CoA hydratase-i 64.6 24 0.00052 20.0 4.5 19 24-42 98-116 (255)
370 PRK11154 fadJ multifunctional 63.9 26 0.00056 23.1 4.6 19 24-42 107-125 (708)
371 PRK11730 fadB multifunctional 63.8 27 0.00058 23.0 4.7 19 24-42 108-126 (715)
372 PF08484 Methyltransf_14: C-me 63.4 22 0.00047 19.1 5.6 40 6-46 55-94 (160)
373 KOG4389 Acetylcholinesterase/B 63.3 11 0.00023 24.5 2.8 31 7-37 198-234 (601)
374 PRK10812 putative DNAse; Provi 63.2 27 0.00058 20.1 5.4 48 5-52 19-67 (265)
375 TIGR03127 RuMP_HxlB 6-phospho 62.6 22 0.00047 18.8 4.8 34 6-41 18-51 (179)
376 TIGR02813 omega_3_PfaA polyket 62.6 15 0.00032 27.9 3.6 28 13-40 666-693 (2582)
377 cd07214 Pat17_isozyme_like Pat 61.9 8.7 0.00019 23.0 2.2 18 24-41 46-63 (349)
378 PF10561 UPF0565: Uncharacteri 61.3 9.9 0.00022 22.7 2.3 22 20-41 192-213 (303)
379 PRK10510 putative outer membra 61.0 28 0.00061 19.6 4.3 28 3-30 126-153 (219)
380 cd07216 Pat17_PNPLA8_PNPLA9_li 60.8 8.2 0.00018 22.5 1.9 17 24-40 45-61 (309)
381 PF01118 Semialdhyde_dh: Semia 60.5 20 0.00044 17.8 3.3 24 22-45 1-25 (121)
382 PRK07396 dihydroxynaphthoic ac 60.1 27 0.00059 20.0 3.9 18 24-41 113-130 (273)
383 PRK13690 hypothetical protein; 60.0 25 0.00054 19.7 3.6 29 2-30 4-35 (184)
384 PF04198 Sugar-bind: Putative 59.8 21 0.00046 20.4 3.4 31 10-41 41-71 (255)
385 cd07199 Pat17_PNPLA8_PNPLA9_li 58.7 11 0.00024 21.3 2.1 18 24-41 37-54 (258)
386 KOG1283 Serine carboxypeptidas 58.5 18 0.0004 22.4 3.1 40 2-41 99-142 (414)
387 PF01872 RibD_C: RibD C-termin 58.2 28 0.00061 18.7 5.1 31 7-40 122-152 (200)
388 TIGR03350 type_VI_ompA type VI 57.8 25 0.00054 18.0 4.1 26 4-30 45-70 (137)
389 PRK10425 DNase TatD; Provision 56.8 36 0.00078 19.6 5.8 49 4-52 13-62 (258)
390 TIGR02440 FadJ fatty oxidation 56.7 40 0.00087 22.2 4.6 19 24-42 102-120 (699)
391 PRK12467 peptide synthase; Pro 56.7 29 0.00063 27.2 4.3 31 11-41 3746-3777(3956)
392 PLN02921 naphthoate synthase 55.6 31 0.00068 20.6 3.7 18 24-41 167-184 (327)
393 PF05952 ComX: Bacillus compet 55.1 18 0.00039 16.4 2.1 23 9-31 3-32 (57)
394 cd07397 MPP_DevT Myxococcus xa 55.0 18 0.0004 20.8 2.7 25 6-30 182-206 (238)
395 PRK03580 carnitinyl-CoA dehydr 55.0 8.8 0.00019 21.8 1.4 18 24-41 100-117 (261)
396 TIGR03789 pdsO proteobacterial 54.8 40 0.00087 19.5 4.3 28 3-30 149-176 (239)
397 cd07215 Pat17_PNPLA8_PNPLA9_li 54.8 12 0.00026 22.1 1.9 17 24-40 43-59 (329)
398 PRK06494 enoyl-CoA hydratase; 54.3 8.7 0.00019 21.8 1.3 18 24-41 100-117 (259)
399 KOG4754 Predicted phosphoglyce 53.5 38 0.00082 19.8 3.7 32 2-35 162-193 (248)
400 PRK12478 enoyl-CoA hydratase; 53.5 11 0.00023 22.0 1.6 18 24-41 118-135 (298)
401 PRK06563 enoyl-CoA hydratase; 53.4 9.4 0.0002 21.6 1.3 18 24-41 98-115 (255)
402 PRK14181 bifunctional 5,10-met 53.3 47 0.001 19.8 4.7 41 9-49 138-184 (287)
403 PRK05441 murQ N-acetylmuramic 53.0 46 0.001 19.6 4.8 23 20-42 62-84 (299)
404 PLN02714 thiamin pyrophosphoki 52.9 19 0.00041 20.4 2.5 37 2-39 86-128 (229)
405 COG1707 ACT domain-containing 52.7 41 0.00088 18.9 4.2 47 6-52 127-175 (218)
406 PF00034 Cytochrom_C: Cytochro 52.4 19 0.00041 16.0 2.1 14 5-18 77-90 (91)
407 PRK14046 malate--CoA ligase su 52.3 14 0.0003 22.6 2.0 33 20-52 118-150 (392)
408 cd05005 SIS_PHI Hexulose-6-pho 51.8 36 0.00078 18.1 4.8 34 6-41 21-54 (179)
409 KOG2308 Phosphatidic acid-pref 51.7 9.4 0.0002 25.5 1.3 23 20-42 416-438 (741)
410 PRK04148 hypothetical protein; 51.6 36 0.00077 17.9 4.1 22 20-41 17-38 (134)
411 PRK07877 hypothetical protein; 51.5 26 0.00056 23.4 3.2 22 20-41 107-128 (722)
412 PHA02595 tk.4 hypothetical pro 51.0 11 0.00024 20.0 1.3 17 29-45 30-46 (154)
413 PRK15416 lipopolysaccharide co 50.6 27 0.00059 19.6 2.8 20 12-31 143-162 (201)
414 PRK15482 transcriptional regul 50.6 47 0.001 19.0 5.1 34 6-41 123-156 (285)
415 COG2230 Cfa Cyclopropane fatty 50.4 53 0.0011 19.5 4.9 42 7-49 60-101 (283)
416 TIGR02690 resist_ArsH arsenica 50.3 38 0.00083 19.2 3.4 26 7-33 108-140 (219)
417 PF12982 DUF3866: Protein of u 50.2 18 0.00039 21.9 2.2 26 8-33 131-157 (320)
418 PF10664 NdhM: Cyanobacterial 50.0 19 0.00041 18.3 1.9 28 4-31 71-102 (108)
419 cd03331 Macro_Poa1p_like_SNF2 50.0 10 0.00022 20.3 1.1 17 29-45 31-48 (152)
420 PRK08252 enoyl-CoA hydratase; 49.3 12 0.00027 21.1 1.4 19 24-42 97-115 (254)
421 PF14639 YqgF: Holliday-juncti 49.2 28 0.00061 18.5 2.7 31 4-34 48-78 (150)
422 PRK11382 frlB fructoselysine-6 49.1 56 0.0012 19.4 4.8 32 4-35 28-59 (340)
423 PRK00414 gmhA phosphoheptose i 48.9 44 0.00096 18.3 4.9 37 4-40 26-64 (192)
424 PRK08788 enoyl-CoA hydratase; 48.5 13 0.00027 21.8 1.4 18 24-41 127-144 (287)
425 COG1737 RpiR Transcriptional r 47.9 54 0.0012 19.0 4.8 35 6-42 118-152 (281)
426 PRK08259 enoyl-CoA hydratase; 47.4 14 0.00029 21.0 1.4 18 24-41 99-116 (254)
427 PRK05665 amidotransferase; Pro 47.3 39 0.00085 19.2 3.2 30 9-38 78-107 (240)
428 PRK02947 hypothetical protein; 47.2 53 0.0012 18.7 4.3 38 4-41 22-61 (246)
429 TIGR03385 CoA_CoA_reduc CoA-di 47.0 55 0.0012 19.7 3.9 31 6-39 123-153 (427)
430 KOG2214 Predicted esterase of 46.8 20 0.00042 23.2 2.0 33 11-43 192-224 (543)
431 COG0431 Predicted flavoprotein 46.3 29 0.00062 18.8 2.5 32 8-39 86-119 (184)
432 PRK01710 murD UDP-N-acetylmura 46.3 69 0.0015 19.7 4.8 32 6-40 3-34 (458)
433 cd07021 Clp_protease_NfeD_like 45.1 52 0.0011 17.9 4.2 37 5-41 44-81 (178)
434 cd03128 GAT_1 Type 1 glutamine 44.8 17 0.00036 15.5 1.2 25 9-33 66-90 (92)
435 COG5379 BtaA S-adenosylmethion 44.6 19 0.00041 22.1 1.7 31 20-52 64-94 (414)
436 TIGR02815 agaS_fam putative su 44.6 71 0.0015 19.3 5.2 23 5-27 27-49 (372)
437 TIGR03607 patatin-related prot 44.4 78 0.0017 21.4 4.5 17 24-40 69-85 (739)
438 PLN02888 enoyl-CoA hydratase 44.0 15 0.00031 21.1 1.1 18 24-41 105-122 (265)
439 COG4667 Predicted esterase of 43.8 34 0.00074 20.5 2.6 23 24-46 43-65 (292)
440 COG4475 Uncharacterized protei 43.4 58 0.0013 18.0 3.6 27 4-30 4-33 (180)
441 COG3453 Uncharacterized protei 43.2 52 0.0011 17.4 3.3 29 6-37 74-102 (130)
442 PRK08202 purine nucleoside pho 43.1 53 0.0012 19.0 3.3 25 5-29 3-30 (272)
443 cd01653 GATase1 Type 1 glutami 42.4 30 0.00065 15.5 2.0 27 9-35 66-92 (115)
444 COG3621 Patatin [General funct 42.2 24 0.00051 21.9 1.8 19 25-43 46-64 (394)
445 cd05007 SIS_Etherase N-acetylm 42.1 68 0.0015 18.4 5.2 38 6-43 33-72 (257)
446 PF14084 DUF4264: Protein of u 42.1 36 0.00077 15.2 2.2 26 5-30 13-38 (52)
447 cd01741 GATase1_1 Subgroup of 41.8 45 0.00097 17.7 2.8 17 22-38 81-97 (188)
448 PRK05479 ketol-acid reductoiso 41.4 48 0.001 20.0 3.0 21 20-40 17-38 (330)
449 PF09949 DUF2183: Uncharacteri 41.3 48 0.001 16.5 5.6 39 13-51 57-97 (100)
450 TIGR00249 sixA phosphohistidin 40.8 56 0.0012 17.1 3.3 24 7-30 87-110 (152)
451 PF04260 DUF436: Protein of un 40.5 64 0.0014 17.9 3.2 24 7-30 2-28 (172)
452 PRK10848 phosphohistidine phos 40.4 58 0.0013 17.2 3.2 22 9-30 89-110 (159)
453 PF13278 DUF4066: Putative ami 39.8 57 0.0012 16.9 3.0 31 9-39 80-110 (166)
454 PF12641 Flavodoxin_3: Flavodo 39.6 63 0.0014 17.3 3.2 22 11-32 58-79 (160)
455 PF00300 His_Phos_1: Histidine 39.5 52 0.0011 16.4 3.7 27 4-30 125-153 (158)
456 PRK14538 putative bifunctional 39.3 1.3E+02 0.0028 20.8 5.5 22 20-41 367-394 (838)
457 PRK05447 1-deoxy-D-xylulose 5- 39.0 72 0.0016 19.8 3.6 6 22-27 3-8 (385)
458 PF02353 CMAS: Mycolic acid cy 38.7 63 0.0014 18.8 3.2 31 19-50 62-92 (273)
459 PRK07053 glutamine amidotransf 38.6 44 0.00096 18.9 2.5 30 10-39 71-100 (234)
460 PF11899 DUF3419: Protein of u 38.5 42 0.00091 20.6 2.5 46 5-52 21-66 (380)
461 PF13344 Hydrolase_6: Haloacid 38.2 29 0.00062 16.9 1.6 23 7-29 66-89 (101)
462 PRK08321 naphthoate synthase; 38.2 76 0.0016 18.6 3.5 25 2-26 51-75 (302)
463 PRK06193 hypothetical protein; 38.2 59 0.0013 18.3 2.9 21 10-30 143-165 (206)
464 cd03144 GATase1_ScBLP_like Typ 38.0 12 0.00026 19.2 0.2 13 23-35 78-90 (114)
465 COG1897 MetA Homoserine trans- 38.0 45 0.00098 20.0 2.5 33 4-39 120-152 (307)
466 PRK07799 enoyl-CoA hydratase; 37.7 18 0.00039 20.5 0.9 18 24-41 106-123 (263)
467 cd03146 GAT1_Peptidase_E Type 37.3 75 0.0016 17.5 3.5 17 21-37 113-129 (212)
468 PF04914 DltD_C: DltD C-termin 37.2 65 0.0014 16.8 3.2 25 2-26 32-56 (130)
469 PF05139 Erythro_esteras: Eryt 37.0 64 0.0014 19.0 3.1 27 5-31 40-71 (346)
470 cd00431 cysteine_hydrolases Cy 36.9 56 0.0012 16.7 2.6 24 11-34 101-124 (161)
471 COG0505 CarA Carbamoylphosphat 36.8 45 0.00097 20.7 2.4 28 7-34 235-262 (368)
472 cd07014 S49_SppA Signal peptid 36.5 64 0.0014 17.1 2.9 28 6-33 25-53 (177)
473 PRK11789 N-acetyl-anhydromuran 36.2 53 0.0011 18.2 2.5 29 2-30 129-158 (185)
474 cd07016 S14_ClpP_1 Caseinolyti 36.2 68 0.0015 16.7 3.1 33 8-40 47-80 (160)
475 cd00394 Clp_protease_like Case 36.1 67 0.0014 16.6 4.1 32 4-35 12-44 (161)
476 KOG0026 Anthranilate synthase, 35.8 38 0.00081 19.1 1.9 15 20-34 90-104 (223)
477 cd06143 PAN2_exo DEDDh 3'-5' e 35.8 53 0.0011 18.1 2.5 12 21-32 101-112 (174)
478 cd07019 S49_SppA_1 Signal pept 35.8 80 0.0017 17.4 4.9 33 7-40 58-92 (211)
479 cd01826 acyloxyacyl_hydrolase_ 35.7 1E+02 0.0022 18.6 3.8 30 2-31 149-180 (305)
480 COG3494 Uncharacterized protei 35.7 79 0.0017 18.9 3.2 23 5-27 54-76 (279)
481 COG1620 LldP L-lactate permeas 35.5 7.7 0.00017 24.9 -0.9 14 21-34 103-116 (522)
482 PF01494 FAD_binding_3: FAD bi 35.4 86 0.0019 17.7 3.8 21 22-42 3-23 (356)
483 PRK06490 glutamine amidotransf 35.4 61 0.0013 18.4 2.8 17 22-38 86-102 (239)
484 PF07521 RMMBL: RNA-metabolisi 35.3 41 0.00088 13.9 2.4 20 7-26 19-38 (43)
485 cd00382 beta_CA Carbonic anhyd 35.3 62 0.0013 16.4 2.6 29 7-35 44-73 (119)
486 PF14871 GHL6: Hypothetical gl 34.6 41 0.00088 17.5 1.8 26 7-32 1-26 (132)
487 COG3675 Predicted lipase [Lipi 34.5 32 0.0007 20.9 1.6 29 12-40 164-194 (332)
488 PRK09533 bifunctional transald 34.5 72 0.0016 22.3 3.3 24 4-27 439-462 (948)
489 cd01714 ETF_beta The electron 34.4 85 0.0018 17.3 3.4 30 12-42 101-134 (202)
490 COG0328 RnhA Ribonuclease HI [ 34.3 81 0.0018 17.1 3.6 29 2-30 45-73 (154)
491 PRK13936 phosphoheptose isomer 34.2 84 0.0018 17.2 5.1 23 20-42 43-65 (197)
492 PF14566 PTPlike_phytase: Inos 34.1 54 0.0012 17.2 2.3 28 4-32 107-134 (149)
493 cd07023 S49_Sppa_N_C Signal pe 34.1 84 0.0018 17.2 3.3 30 5-34 19-49 (208)
494 PF07992 Pyr_redox_2: Pyridine 34.1 75 0.0016 16.6 3.2 20 22-41 1-20 (201)
495 cd03379 beta_CA_cladeD Carboni 33.8 75 0.0016 16.5 3.1 24 7-30 41-65 (142)
496 cd03378 beta_CA_cladeC Carboni 33.6 72 0.0016 17.1 2.7 27 8-34 78-105 (154)
497 TIGR01440 conserved hypothetic 33.5 77 0.0017 17.6 2.8 24 7-30 2-28 (172)
498 PRK11449 putative deoxyribonuc 33.5 98 0.0021 17.8 5.6 46 7-52 20-66 (258)
499 COG3531 Predicted protein-disu 33.4 30 0.00065 19.8 1.3 19 25-43 11-29 (212)
500 PF09989 DUF2229: CoA enzyme a 33.2 95 0.0021 17.5 3.3 29 2-30 165-193 (221)
No 1
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.21 E-value=6.5e-11 Score=66.10 Aligned_cols=49 Identities=35% Similarity=0.670 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHHHhcC---CCcEEEEEEchHHHHHHHHHhhcCCceeEeee
Q 038643 3 GVVADISASVDWLKANG---SKKVGMVGYCMGSALTIACSASLMERKHTFRM 51 (52)
Q Consensus 3 ~~~~d~~~~~~~l~~~~---~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~~ 51 (52)
....|+.++++||++++ .++|+++|+||||.+++.++.+.|+..++++|
T Consensus 91 ~~~~d~~a~~~~L~~~~~~~~~~ig~~GfC~GG~~a~~~a~~~~~v~a~v~f 142 (236)
T COG0412 91 EVLADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAATRAPEVKAAVAF 142 (236)
T ss_pred HHHHHHHHHHHHHHhCCCCCCceEEEEEEcccHHHHHHhhcccCCccEEEEe
Confidence 56889999999999886 68899999999999999999998888888876
No 2
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=99.21 E-value=1e-10 Score=62.47 Aligned_cols=47 Identities=30% Similarity=0.517 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhc-CCCcEEEEEEchHHHHHHHHHhhcCCceeEeee
Q 038643 5 VADISASVDWLKAN-GSKKVGMVGYCMGSALTIACSASLMERKHTFRM 51 (52)
Q Consensus 5 ~~d~~~~~~~l~~~-~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~~ 51 (52)
.+|+.+.++.+.+. +.+++.++||||||.+++.++.++|++++.+.+
T Consensus 27 ~~~~~~~~~~~~~~l~~~~~~~vG~S~Gg~~~~~~a~~~p~~v~~lvl 74 (230)
T PF00561_consen 27 TDDLAADLEALREALGIKKINLVGHSMGGMLALEYAAQYPERVKKLVL 74 (230)
T ss_dssp HHHHHHHHHHHHHHHTTSSEEEEEETHHHHHHHHHHHHSGGGEEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEECCChHHHHHHHHHCchhhcCcEE
Confidence 45666666665554 567799999999999999999999998877654
No 3
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=99.18 E-value=1.7e-10 Score=65.53 Aligned_cols=48 Identities=21% Similarity=0.380 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHHHhcCCCcEEEEEEchHHHHHHHHHhhcCCceeEee
Q 038643 3 GVVADISASVDWLKANGSKKVGMVGYCMGSALTIACSASLMERKHTFR 50 (52)
Q Consensus 3 ~~~~d~~~~~~~l~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~ 50 (52)
...+|+..+++++++.+..+++++||||||.+++.++.++|+.+..++
T Consensus 81 ~~~~Dv~~ai~~L~~~~~~~v~LvG~SmGG~vAl~~A~~~p~~v~~lV 128 (266)
T TIGR03101 81 VWKEDVAAAYRWLIEQGHPPVTLWGLRLGALLALDAANPLAAKCNRLV 128 (266)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEECHHHHHHHHHHHhCccccceEE
Confidence 456899999999988767899999999999999999999988776554
No 4
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=99.16 E-value=1.3e-10 Score=63.33 Aligned_cols=50 Identities=32% Similarity=0.550 Sum_probs=42.9
Q ss_pred hhHHHHHHHHHHHHHhcC---CCcEEEEEEchHHHHHHHHHhhcCCceeEeee
Q 038643 2 VGVVADISASVDWLKANG---SKKVGMVGYCMGSALTIACSASLMERKHTFRM 51 (52)
Q Consensus 2 ~~~~~d~~~~~~~l~~~~---~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~~ 51 (52)
+...+|+.++++++++++ .+||+++|+||||.+++.++.+.|...+++++
T Consensus 76 ~~~~~~~~aa~~~l~~~~~~~~~kig~vGfc~GG~~a~~~a~~~~~~~a~v~~ 128 (218)
T PF01738_consen 76 EQVAADLQAAVDYLRAQPEVDPGKIGVVGFCWGGKLALLLAARDPRVDAAVSF 128 (218)
T ss_dssp HHHHHHHHHHHHHHHCTTTCEEEEEEEEEETHHHHHHHHHHCCTTTSSEEEEE
T ss_pred HHHHHHHHHHHHHHHhccccCCCcEEEEEEecchHHhhhhhhhccccceEEEE
Confidence 356788999999999986 57999999999999999999888677777765
No 5
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=99.13 E-value=3.1e-10 Score=64.69 Aligned_cols=50 Identities=18% Similarity=0.047 Sum_probs=41.0
Q ss_pred hhHHHHHHHHHHHHHhcC---CCcEEEEEEchHHHHHHHHHhhcCCceeEeee
Q 038643 2 VGVVADISASVDWLKANG---SKKVGMVGYCMGSALTIACSASLMERKHTFRM 51 (52)
Q Consensus 2 ~~~~~d~~~~~~~l~~~~---~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~~ 51 (52)
+...+|+.++++++.... ..+++++||||||.+++.++.++|+.+.++.+
T Consensus 112 ~~~~~D~~~~i~~l~~~~~~~~~~i~l~GhSmGG~ia~~~a~~~p~~v~~lvl 164 (330)
T PLN02298 112 DLVVEDCLSFFNSVKQREEFQGLPRFLYGESMGGAICLLIHLANPEGFDGAVL 164 (330)
T ss_pred HHHHHHHHHHHHHHHhcccCCCCCEEEEEecchhHHHHHHHhcCcccceeEEE
Confidence 346789999999997642 35799999999999999999999987766543
No 6
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=99.09 E-value=5.1e-10 Score=62.80 Aligned_cols=39 Identities=8% Similarity=0.077 Sum_probs=31.8
Q ss_pred HHHHhcCCCcEEEEEEchHHHHHHHHHhhcCCceeEeee
Q 038643 13 DWLKANGSKKVGMVGYCMGSALTIACSASLMERKHTFRM 51 (52)
Q Consensus 13 ~~l~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~~ 51 (52)
+++++...+++.++||||||.+++.++.++|+++.++.+
T Consensus 94 ~~l~~l~~~~~~lvGhS~Gg~va~~~a~~~p~~v~~lil 132 (294)
T PLN02824 94 DFCSDVVGDPAFVICNSVGGVVGLQAAVDAPELVRGVML 132 (294)
T ss_pred HHHHHhcCCCeEEEEeCHHHHHHHHHHHhChhheeEEEE
Confidence 444444468899999999999999999999998877654
No 7
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=99.08 E-value=8.1e-10 Score=60.80 Aligned_cols=48 Identities=19% Similarity=0.492 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhcC---CCcEEEEEEchHHHHHHHHHhhcCCceeEeeeC
Q 038643 5 VADISASVDWLKANG---SKKVGMVGYCMGSALTIACSASLMERKHTFRMN 52 (52)
Q Consensus 5 ~~d~~~~~~~l~~~~---~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~~~ 52 (52)
++.++.+++||++++ .++|+++|.|.||-+|+.+|+.+|++.+++.+|
T Consensus 3 LEyfe~Ai~~L~~~p~v~~~~Igi~G~SkGaelALllAs~~~~i~avVa~~ 53 (213)
T PF08840_consen 3 LEYFEEAIDWLKSHPEVDPDKIGIIGISKGAELALLLASRFPQISAVVAIS 53 (213)
T ss_dssp CHHHHHHHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSSSEEEEEEES
T ss_pred hHHHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHhcCCCccEEEEeC
Confidence 367899999999996 479999999999999999999999888887765
No 8
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=99.07 E-value=1.2e-09 Score=57.46 Aligned_cols=44 Identities=27% Similarity=0.360 Sum_probs=34.1
Q ss_pred HHHHHHHHHhcCCCcEEEEEEchHHHHHHHHHhhcCCceeEeee
Q 038643 8 ISASVDWLKANGSKKVGMVGYCMGSALTIACSASLMERKHTFRM 51 (52)
Q Consensus 8 ~~~~~~~l~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~~ 51 (52)
+..+.++++....+++.++|||+||.+++.++.++|+.+.++.+
T Consensus 53 ~~~l~~~l~~~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~vl 96 (228)
T PF12697_consen 53 AEDLAELLDALGIKKVILVGHSMGGMIALRLAARYPDRVKGLVL 96 (228)
T ss_dssp HHHHHHHHHHTTTSSEEEEEETHHHHHHHHHHHHSGGGEEEEEE
T ss_pred hhhhhhccccccccccccccccccccccccccccccccccccee
Confidence 34444555555557899999999999999999999988776543
No 9
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=99.07 E-value=7.5e-10 Score=59.98 Aligned_cols=46 Identities=20% Similarity=0.401 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHHhcC---CCcEEEEEEchHHHHHHHHHhhcCCceeE
Q 038643 3 GVVADISASVDWLKANG---SKKVGMVGYCMGSALTIACSASLMERKHT 48 (52)
Q Consensus 3 ~~~~d~~~~~~~l~~~~---~~~i~l~G~S~GG~~a~~~a~~~p~~~~~ 48 (52)
..++|+.++++++.+++ ++||+++|+|+||.+++.++.++|++.++
T Consensus 43 ~~~~D~~~~i~~l~~~~~iD~~ri~i~G~S~GG~~a~~~~~~~~~~f~a 91 (213)
T PF00326_consen 43 ADVDDVVAAIEYLIKQYYIDPDRIGIMGHSYGGYLALLAATQHPDRFKA 91 (213)
T ss_dssp HHHHHHHHHHHHHHHTTSEEEEEEEEEEETHHHHHHHHHHHHTCCGSSE
T ss_pred cchhhHHHHHHHHhccccccceeEEEEcccccccccchhhcccceeeee
Confidence 46889999999998884 68999999999999999999988987544
No 10
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=99.06 E-value=3.1e-10 Score=63.30 Aligned_cols=46 Identities=22% Similarity=0.324 Sum_probs=36.2
Q ss_pred hHHHHHHHHHHHHHhcCCCcEEEEEEchHHHHHHHHHhhcCCceeEeee
Q 038643 3 GVVADISASVDWLKANGSKKVGMVGYCMGSALTIACSASLMERKHTFRM 51 (52)
Q Consensus 3 ~~~~d~~~~~~~l~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~~ 51 (52)
...+|+.++++.+ ..+++.++||||||.+++.+|.++|+.++++.+
T Consensus 76 ~~~~~~~~~i~~l---~~~~~~LvG~S~GG~va~~~a~~~p~~v~~lvl 121 (276)
T TIGR02240 76 GLAKLAARMLDYL---DYGQVNAIGVSWGGALAQQFAHDYPERCKKLIL 121 (276)
T ss_pred HHHHHHHHHHHHh---CcCceEEEEECHHHHHHHHHHHHCHHHhhheEE
Confidence 4456666666654 357899999999999999999999998777654
No 11
>PRK10749 lysophospholipase L2; Provisional
Probab=99.06 E-value=1e-09 Score=62.98 Aligned_cols=49 Identities=14% Similarity=0.000 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHHHhc-CCCcEEEEEEchHHHHHHHHHhhcCCceeEeee
Q 038643 3 GVVADISASVDWLKAN-GSKKVGMVGYCMGSALTIACSASLMERKHTFRM 51 (52)
Q Consensus 3 ~~~~d~~~~~~~l~~~-~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~~ 51 (52)
...+|+..+++.+... +..++.++||||||.+++.++.++|+.++++++
T Consensus 112 ~~~~d~~~~~~~~~~~~~~~~~~l~GhSmGG~ia~~~a~~~p~~v~~lvl 161 (330)
T PRK10749 112 DYVDDLAAFWQQEIQPGPYRKRYALAHSMGGAILTLFLQRHPGVFDAIAL 161 (330)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEEEcHHHHHHHHHHHhCCCCcceEEE
Confidence 4566777777765443 457899999999999999999999987766543
No 12
>PRK10673 acyl-CoA esterase; Provisional
Probab=99.06 E-value=5.5e-10 Score=61.05 Aligned_cols=46 Identities=22% Similarity=0.304 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHHHhcCCCcEEEEEEchHHHHHHHHHhhcCCceeEeee
Q 038643 3 GVVADISASVDWLKANGSKKVGMVGYCMGSALTIACSASLMERKHTFRM 51 (52)
Q Consensus 3 ~~~~d~~~~~~~l~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~~ 51 (52)
...+|+.++++.+ ..+++.++||||||.+++.++.++|++++++.+
T Consensus 66 ~~~~d~~~~l~~l---~~~~~~lvGhS~Gg~va~~~a~~~~~~v~~lvl 111 (255)
T PRK10673 66 AMAQDLLDTLDAL---QIEKATFIGHSMGGKAVMALTALAPDRIDKLVA 111 (255)
T ss_pred HHHHHHHHHHHHc---CCCceEEEEECHHHHHHHHHHHhCHhhcceEEE
Confidence 4456677766654 356799999999999999999999988776653
No 13
>PHA02857 monoglyceride lipase; Provisional
Probab=99.06 E-value=9.2e-10 Score=61.15 Aligned_cols=48 Identities=19% Similarity=0.196 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHhc-CCCcEEEEEEchHHHHHHHHHhhcCCceeEeee
Q 038643 4 VVADISASVDWLKAN-GSKKVGMVGYCMGSALTIACSASLMERKHTFRM 51 (52)
Q Consensus 4 ~~~d~~~~~~~l~~~-~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~~ 51 (52)
.++|+...++++++. +..+++++||||||.+++.++.++|+.++++.+
T Consensus 79 ~~~d~~~~l~~~~~~~~~~~~~lvG~S~GG~ia~~~a~~~p~~i~~lil 127 (276)
T PHA02857 79 YVRDVVQHVVTIKSTYPGVPVFLLGHSMGATISILAAYKNPNLFTAMIL 127 (276)
T ss_pred HHHHHHHHHHHHHhhCCCCCEEEEEcCchHHHHHHHHHhCccccceEEE
Confidence 456777777776654 246899999999999999999999987666543
No 14
>PLN02965 Probable pheophorbidase
Probab=99.05 E-value=5.5e-10 Score=61.77 Aligned_cols=44 Identities=14% Similarity=0.066 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHhcCC-CcEEEEEEchHHHHHHHHHhhcCCceeEeee
Q 038643 5 VADISASVDWLKANGS-KKVGMVGYCMGSALTIACSASLMERKHTFRM 51 (52)
Q Consensus 5 ~~d~~~~~~~l~~~~~-~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~~ 51 (52)
.+|+.++++. .+. +++.++||||||.+++.++.++|+++..+++
T Consensus 58 a~dl~~~l~~---l~~~~~~~lvGhSmGG~ia~~~a~~~p~~v~~lvl 102 (255)
T PLN02965 58 NRPLFALLSD---LPPDHKVILVGHSIGGGSVTEALCKFTDKISMAIY 102 (255)
T ss_pred HHHHHHHHHh---cCCCCCEEEEecCcchHHHHHHHHhCchheeEEEE
Confidence 4445555544 333 5899999999999999999999998887664
No 15
>PRK10566 esterase; Provisional
Probab=99.04 E-value=1.3e-09 Score=59.85 Aligned_cols=47 Identities=13% Similarity=0.140 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHhcC---CCcEEEEEEchHHHHHHHHHhhcCCceeEee
Q 038643 4 VVADISASVDWLKANG---SKKVGMVGYCMGSALTIACSASLMERKHTFR 50 (52)
Q Consensus 4 ~~~d~~~~~~~l~~~~---~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~ 50 (52)
..+|+..+++++.+++ .++++++||||||.+++.++.++|+..+.++
T Consensus 87 ~~~~~~~~~~~l~~~~~~~~~~i~v~G~S~Gg~~al~~~~~~~~~~~~~~ 136 (249)
T PRK10566 87 NMQEFPTLRAAIREEGWLLDDRLAVGGASMGGMTALGIMARHPWVKCVAS 136 (249)
T ss_pred HHHHHHHHHHHHHhcCCcCccceeEEeecccHHHHHHHHHhCCCeeEEEE
Confidence 3577888888887763 5789999999999999999999888766554
No 16
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=99.02 E-value=1.1e-09 Score=63.08 Aligned_cols=48 Identities=17% Similarity=0.141 Sum_probs=37.7
Q ss_pred hHHHHHHHHHHHHHhc---CCCcEEEEEEchHHHHHHHHHhhcCCceeEee
Q 038643 3 GVVADISASVDWLKAN---GSKKVGMVGYCMGSALTIACSASLMERKHTFR 50 (52)
Q Consensus 3 ~~~~d~~~~~~~l~~~---~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~ 50 (52)
..++|+.+.++.+... +..+++++||||||.+++.++.++|+.+.+++
T Consensus 141 ~~~~dv~~~l~~l~~~~~~~~~~~~LvGhSmGG~val~~a~~~p~~v~glV 191 (349)
T PLN02385 141 DLVDDVIEHYSKIKGNPEFRGLPSFLFGQSMGGAVALKVHLKQPNAWDGAI 191 (349)
T ss_pred HHHHHHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHhCcchhhhee
Confidence 3567777777777653 23579999999999999999999998766554
No 17
>PRK00870 haloalkane dehalogenase; Provisional
Probab=99.00 E-value=2e-09 Score=60.77 Aligned_cols=42 Identities=14% Similarity=0.154 Sum_probs=33.3
Q ss_pred HHHHHHHhcCCCcEEEEEEchHHHHHHHHHhhcCCceeEeee
Q 038643 10 ASVDWLKANGSKKVGMVGYCMGSALTIACSASLMERKHTFRM 51 (52)
Q Consensus 10 ~~~~~l~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~~ 51 (52)
.+.++++..+.+++.++||||||.+++.++.++|+.+.++.+
T Consensus 104 ~l~~~l~~l~~~~v~lvGhS~Gg~ia~~~a~~~p~~v~~lvl 145 (302)
T PRK00870 104 WMRSWFEQLDLTDVTLVCQDWGGLIGLRLAAEHPDRFARLVV 145 (302)
T ss_pred HHHHHHHHcCCCCEEEEEEChHHHHHHHHHHhChhheeEEEE
Confidence 333444444567899999999999999999999998877764
No 18
>PRK03592 haloalkane dehalogenase; Provisional
Probab=98.99 E-value=2.5e-09 Score=60.06 Aligned_cols=44 Identities=27% Similarity=0.224 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEEchHHHHHHHHHhhcCCceeEeee
Q 038643 5 VADISASVDWLKANGSKKVGMVGYCMGSALTIACSASLMERKHTFRM 51 (52)
Q Consensus 5 ~~d~~~~~~~l~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~~ 51 (52)
.+|+...++. .+.+++.++||||||.+++.++.++|++++++.+
T Consensus 80 a~dl~~ll~~---l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil 123 (295)
T PRK03592 80 ARYLDAWFDA---LGLDDVVLVGHDWGSALGFDWAARHPDRVRGIAF 123 (295)
T ss_pred HHHHHHHHHH---hCCCCeEEEEECHHHHHHHHHHHhChhheeEEEE
Confidence 4455555444 3457899999999999999999999998887764
No 19
>PRK13604 luxD acyl transferase; Provisional
Probab=98.99 E-value=2.1e-09 Score=62.27 Aligned_cols=39 Identities=15% Similarity=0.428 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEchHHHHHHHHHhhc
Q 038643 4 VVADISASVDWLKANGSKKVGMVGYCMGSALTIACSASL 42 (52)
Q Consensus 4 ~~~d~~~~~~~l~~~~~~~i~l~G~S~GG~~a~~~a~~~ 42 (52)
...|+.++++|++++..++|+++||||||.++...|...
T Consensus 91 g~~Dl~aaid~lk~~~~~~I~LiG~SmGgava~~~A~~~ 129 (307)
T PRK13604 91 GKNSLLTVVDWLNTRGINNLGLIAASLSARIAYEVINEI 129 (307)
T ss_pred cHHHHHHHHHHHHhcCCCceEEEEECHHHHHHHHHhcCC
Confidence 358999999999988778999999999999987776543
No 20
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=98.97 E-value=1.7e-09 Score=59.94 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=31.5
Q ss_pred HHHHHHhcCCCcEEEEEEchHHHHHHHHHhhcCCceeEee
Q 038643 11 SVDWLKANGSKKVGMVGYCMGSALTIACSASLMERKHTFR 50 (52)
Q Consensus 11 ~~~~l~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~ 50 (52)
+.+++.....+++.++||||||.+++.++.++|+++++++
T Consensus 91 l~~~l~~l~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lv 130 (282)
T TIGR03343 91 VKGLMDALDIEKAHLVGNSMGGATALNFALEYPDRIGKLI 130 (282)
T ss_pred HHHHHHHcCCCCeeEEEECchHHHHHHHHHhChHhhceEE
Confidence 3344444456899999999999999999999998776554
No 21
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=98.96 E-value=2.8e-09 Score=58.02 Aligned_cols=47 Identities=19% Similarity=0.178 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHhcC---CCcEEEEEEchHHHHHHHHHhhcCCceeEee
Q 038643 4 VVADISASVDWLKANG---SKKVGMVGYCMGSALTIACSASLMERKHTFR 50 (52)
Q Consensus 4 ~~~d~~~~~~~l~~~~---~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~ 50 (52)
...|+..++++++++. .++++++||||||.+++.++.++|+..+++.
T Consensus 75 ~~~~~~~~i~~~~~~~~id~~~i~l~G~S~Gg~~a~~~a~~~p~~~~~~~ 124 (212)
T TIGR01840 75 EVESLHQLIDAVKANYSIDPNRVYVTGLSAGGGMTAVLGCTYPDVFAGGA 124 (212)
T ss_pred cHHHHHHHHHHHHHhcCcChhheEEEEECHHHHHHHHHHHhCchhheEEE
Confidence 4567888888888763 4689999999999999999999998766653
No 22
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=98.95 E-value=2e-09 Score=61.97 Aligned_cols=44 Identities=23% Similarity=0.354 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHhcCCCc-EEEEEEchHHHHHHHHHhhcCCceeEeee
Q 038643 5 VADISASVDWLKANGSKK-VGMVGYCMGSALTIACSASLMERKHTFRM 51 (52)
Q Consensus 5 ~~d~~~~~~~l~~~~~~~-i~l~G~S~GG~~a~~~a~~~p~~~~~~~~ 51 (52)
.+|+.++++ ..+.++ +.++||||||.+++.++.++|+++..+++
T Consensus 124 a~dl~~ll~---~l~l~~~~~lvG~SmGG~vA~~~A~~~P~~V~~LvL 168 (343)
T PRK08775 124 ADAIALLLD---ALGIARLHAFVGYSYGALVGLQFASRHPARVRTLVV 168 (343)
T ss_pred HHHHHHHHH---HcCCCcceEEEEECHHHHHHHHHHHHChHhhheEEE
Confidence 444544444 444445 57999999999999999999998777654
No 23
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=98.95 E-value=6.9e-09 Score=58.46 Aligned_cols=49 Identities=16% Similarity=0.308 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHHHHhc--CCCcEEEEEEchHHHHHHHHHhhcCCceeEeee
Q 038643 3 GVVADISASVDWLKAN--GSKKVGMVGYCMGSALTIACSASLMERKHTFRM 51 (52)
Q Consensus 3 ~~~~d~~~~~~~l~~~--~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~~ 51 (52)
...+|+.++++++++. +.++++++||||||.+++.++..++...+.+.+
T Consensus 80 ~~~~d~~~~~~~l~~~~~g~~~i~l~G~S~Gg~~a~~~a~~~~~v~~lil~ 130 (274)
T TIGR03100 80 GIDADIAAAIDAFREAAPHLRRIVAWGLCDAASAALLYAPADLRVAGLVLL 130 (274)
T ss_pred HHHHHHHHHHHHHHhhCCCCCcEEEEEECHHHHHHHHHhhhCCCccEEEEE
Confidence 3568999999999876 347899999999999999998664444444443
No 24
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=98.94 E-value=5.7e-09 Score=56.77 Aligned_cols=39 Identities=13% Similarity=0.193 Sum_probs=30.1
Q ss_pred HHHHhcCCCcEEEEEEchHHHHHHHHHhhcCCc-eeEeee
Q 038643 13 DWLKANGSKKVGMVGYCMGSALTIACSASLMER-KHTFRM 51 (52)
Q Consensus 13 ~~l~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~-~~~~~~ 51 (52)
+.++..+.+++.++||||||.+++.++.++|+. +..+.+
T Consensus 58 ~~l~~~~~~~~~lvG~S~Gg~va~~~a~~~~~~~v~~lvl 97 (242)
T PRK11126 58 QTLQSYNILPYWLVGYSLGGRIAMYYACQGLAGGLCGLIV 97 (242)
T ss_pred HHHHHcCCCCeEEEEECHHHHHHHHHHHhCCcccccEEEE
Confidence 444444568999999999999999999998653 666554
No 25
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=98.93 E-value=2.4e-09 Score=57.10 Aligned_cols=44 Identities=11% Similarity=0.285 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhcCCCcEEEEEEchHHHHHHHHHhhcCCceeEee
Q 038643 7 DISASVDWLKANGSKKVGMVGYCMGSALTIACSASLMERKHTFR 50 (52)
Q Consensus 7 d~~~~~~~l~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~ 50 (52)
++...++.+.....+++.++||||||.+++.++.++|+.+.++.
T Consensus 51 ~~~~~~~~~~~~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~i 94 (245)
T TIGR01738 51 SLADAAEAIAAQAPDPAIWLGWSLGGLVALHIAATHPDRVRALV 94 (245)
T ss_pred CHHHHHHHHHHhCCCCeEEEEEcHHHHHHHHHHHHCHHhhheee
Confidence 34455555555445789999999999999999999998666654
No 26
>PRK10349 carboxylesterase BioH; Provisional
Probab=98.93 E-value=3.3e-09 Score=58.42 Aligned_cols=42 Identities=12% Similarity=0.179 Sum_probs=33.0
Q ss_pred HHHHHHHhcCCCcEEEEEEchHHHHHHHHHhhcCCceeEeee
Q 038643 10 ASVDWLKANGSKKVGMVGYCMGSALTIACSASLMERKHTFRM 51 (52)
Q Consensus 10 ~~~~~l~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~~ 51 (52)
..++.+.+...+++.++||||||.+++.+|.++|+++..+.+
T Consensus 63 ~~~~~l~~~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~lil 104 (256)
T PRK10349 63 DMAEAVLQQAPDKAIWLGWSLGGLVASQIALTHPERVQALVT 104 (256)
T ss_pred HHHHHHHhcCCCCeEEEEECHHHHHHHHHHHhChHhhheEEE
Confidence 344444444568899999999999999999999998777654
No 27
>PRK07581 hypothetical protein; Validated
Probab=98.92 E-value=2.5e-09 Score=61.26 Aligned_cols=47 Identities=17% Similarity=0.197 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHh-cCCCc-EEEEEEchHHHHHHHHHhhcCCceeEeee
Q 038643 5 VADISASVDWLKA-NGSKK-VGMVGYCMGSALTIACSASLMERKHTFRM 51 (52)
Q Consensus 5 ~~d~~~~~~~l~~-~~~~~-i~l~G~S~GG~~a~~~a~~~p~~~~~~~~ 51 (52)
.+|+......+.+ .+.++ +.++||||||++++.+|.++|+++..+++
T Consensus 106 ~~~~~~~~~~l~~~lgi~~~~~lvG~S~GG~va~~~a~~~P~~V~~Lvl 154 (339)
T PRK07581 106 YDNVRAQHRLLTEKFGIERLALVVGWSMGAQQTYHWAVRYPDMVERAAP 154 (339)
T ss_pred HHHHHHHHHHHHHHhCCCceEEEEEeCHHHHHHHHHHHHCHHHHhhhee
Confidence 4566654444433 45678 47999999999999999999998777553
No 28
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=98.92 E-value=5.6e-09 Score=60.34 Aligned_cols=45 Identities=16% Similarity=0.406 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhc-CCCcEEEEEEchHHHHHHHHHhhcCCceeEee
Q 038643 6 ADISASVDWLKAN-GSKKVGMVGYCMGSALTIACSASLMERKHTFR 50 (52)
Q Consensus 6 ~d~~~~~~~l~~~-~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~ 50 (52)
+|+.++++++.++ +.+++.++||||||.+++.+++.+|+.++.+.
T Consensus 120 ~~~~~~v~~l~~~~~~~~i~lvGhS~GG~i~~~~~~~~~~~v~~lv 165 (350)
T TIGR01836 120 GYIDKCVDYICRTSKLDQISLLGICQGGTFSLCYAALYPDKIKNLV 165 (350)
T ss_pred HHHHHHHHHHHHHhCCCcccEEEECHHHHHHHHHHHhCchheeeEE
Confidence 4578889998876 46789999999999999999999998766543
No 29
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=98.90 E-value=6.9e-09 Score=56.53 Aligned_cols=33 Identities=15% Similarity=0.196 Sum_probs=28.4
Q ss_pred CCCcEEEEEEchHHHHHHHHHhhcCCceeEeee
Q 038643 19 GSKKVGMVGYCMGSALTIACSASLMERKHTFRM 51 (52)
Q Consensus 19 ~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~~ 51 (52)
..+++.++||||||.+++.++.++|+.+..+.+
T Consensus 94 ~~~~~~liG~S~Gg~ia~~~a~~~p~~v~~lvl 126 (288)
T TIGR01250 94 GLDKFYLLGHSWGGMLAQEYALKYGQHLKGLII 126 (288)
T ss_pred CCCcEEEEEeehHHHHHHHHHHhCccccceeeE
Confidence 456799999999999999999999987776654
No 30
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=98.89 E-value=9e-09 Score=58.01 Aligned_cols=45 Identities=16% Similarity=0.104 Sum_probs=34.7
Q ss_pred HHHHHHHHHHhcC-CCcEEEEEEchHHHHHHHHHhhcCCceeEeee
Q 038643 7 DISASVDWLKANG-SKKVGMVGYCMGSALTIACSASLMERKHTFRM 51 (52)
Q Consensus 7 d~~~~~~~l~~~~-~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~~ 51 (52)
+...+.+++++.. .++++++||||||.++..++.++|+.+..+++
T Consensus 72 ~~~~l~~~i~~l~~~~~v~lvGhS~GG~v~~~~a~~~p~~v~~lv~ 117 (273)
T PLN02211 72 YNKPLIDFLSSLPENEKVILVGHSAGGLSVTQAIHRFPKKICLAVY 117 (273)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEECchHHHHHHHHHhChhheeEEEE
Confidence 3444556665553 47899999999999999999999988776654
No 31
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=98.89 E-value=3.5e-09 Score=57.09 Aligned_cols=43 Identities=19% Similarity=0.271 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEEchHHHHHHHHHhhcCCceeEee
Q 038643 5 VADISASVDWLKANGSKKVGMVGYCMGSALTIACSASLMERKHTFR 50 (52)
Q Consensus 5 ~~d~~~~~~~l~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~ 50 (52)
.+|+.++++ ....+++.++||||||.+++.++.++|+.++.+.
T Consensus 67 ~~~~~~~i~---~~~~~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~i 109 (257)
T TIGR03611 67 ADDVLQLLD---ALNIERFHFVGHALGGLIGLQLALRYPERLLSLV 109 (257)
T ss_pred HHHHHHHHH---HhCCCcEEEEEechhHHHHHHHHHHChHHhHHhe
Confidence 344444444 3345789999999999999999999987655543
No 32
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=98.88 E-value=1e-08 Score=58.85 Aligned_cols=49 Identities=20% Similarity=0.231 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHHhc-CCCcEEEEEEchHHHHHHHHHhhcCCceeEeee
Q 038643 3 GVVADISASVDWLKAN-GSKKVGMVGYCMGSALTIACSASLMERKHTFRM 51 (52)
Q Consensus 3 ~~~~d~~~~~~~l~~~-~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~~ 51 (52)
...+|+...++.+... +..+++++||||||.+++.++.+++..+.++++
T Consensus 88 ~~~~dl~~~~~~~~~~~~~~p~~l~gHSmGg~Ia~~~~~~~~~~i~~~vL 137 (298)
T COG2267 88 DYVDDLDAFVETIAEPDPGLPVFLLGHSMGGLIALLYLARYPPRIDGLVL 137 (298)
T ss_pred HHHHHHHHHHHHHhccCCCCCeEEEEeCcHHHHHHHHHHhCCccccEEEE
Confidence 4567888888877664 468999999999999999999999987777654
No 33
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=98.88 E-value=7.4e-09 Score=61.20 Aligned_cols=41 Identities=15% Similarity=0.237 Sum_probs=33.0
Q ss_pred HHHHHHhcCCCcEEEEEEchHHHHHHHHHhhcCCceeEeee
Q 038643 11 SVDWLKANGSKKVGMVGYCMGSALTIACSASLMERKHTFRM 51 (52)
Q Consensus 11 ~~~~l~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~~ 51 (52)
+.+|++..+.++++++||||||.+++.++.++|+.+..+++
T Consensus 166 i~~~~~~l~~~~~~lvGhS~GG~la~~~a~~~p~~v~~lvl 206 (402)
T PLN02894 166 FEEWRKAKNLSNFILLGHSFGGYVAAKYALKHPEHVQHLIL 206 (402)
T ss_pred HHHHHHHcCCCCeEEEEECHHHHHHHHHHHhCchhhcEEEE
Confidence 34555555567899999999999999999999987776543
No 34
>COG1647 Esterase/lipase [General function prediction only]
Probab=98.86 E-value=1.6e-08 Score=56.78 Aligned_cols=48 Identities=21% Similarity=0.293 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHHHhcCCCcEEEEEEchHHHHHHHHHhhcCCceeEeee
Q 038643 3 GVVADISASVDWLKANGSKKVGMVGYCMGSALTIACSASLMERKHTFRM 51 (52)
Q Consensus 3 ~~~~d~~~~~~~l~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~~ 51 (52)
..++|+....++|.+.+.+.|.++|.||||.+++.+|.++| ..+.+++
T Consensus 67 DW~~~v~d~Y~~L~~~gy~eI~v~GlSmGGv~alkla~~~p-~K~iv~m 114 (243)
T COG1647 67 DWWEDVEDGYRDLKEAGYDEIAVVGLSMGGVFALKLAYHYP-PKKIVPM 114 (243)
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEEeecchhHHHHHHHhhCC-ccceeee
Confidence 46789999999999888899999999999999999999987 4444443
No 35
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=98.86 E-value=8.5e-09 Score=59.58 Aligned_cols=39 Identities=21% Similarity=0.258 Sum_probs=30.8
Q ss_pred HHHHhcCCCc-EEEEEEchHHHHHHHHHhhcCCceeEeee
Q 038643 13 DWLKANGSKK-VGMVGYCMGSALTIACSASLMERKHTFRM 51 (52)
Q Consensus 13 ~~l~~~~~~~-i~l~G~S~GG~~a~~~a~~~p~~~~~~~~ 51 (52)
+.++..+.++ +.++||||||.+++.++.++|++++.+++
T Consensus 118 ~~~~~l~~~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~lvl 157 (351)
T TIGR01392 118 LLLDHLGIEQIAAVVGGSMGGMQALEWAIDYPERVRAIVV 157 (351)
T ss_pred HHHHHcCCCCceEEEEECHHHHHHHHHHHHChHhhheEEE
Confidence 3333445567 99999999999999999999988776553
No 36
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=98.85 E-value=1e-08 Score=62.42 Aligned_cols=48 Identities=19% Similarity=0.230 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHHHhcC--CCcEEEEEEchHHHHHHHHHhhcCCceeEee
Q 038643 3 GVVADISASVDWLKANG--SKKVGMVGYCMGSALTIACSASLMERKHTFR 50 (52)
Q Consensus 3 ~~~~d~~~~~~~l~~~~--~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~ 50 (52)
...+|+.++++|+.+++ ..+|+++|+|+||.+++.+|..+|+.++++.
T Consensus 77 ~~~~D~~~~i~~l~~q~~~~~~v~~~G~S~GG~~a~~~a~~~~~~l~aiv 126 (550)
T TIGR00976 77 DEAADGYDLVDWIAKQPWCDGNVGMLGVSYLAVTQLLAAVLQPPALRAIA 126 (550)
T ss_pred ccchHHHHHHHHHHhCCCCCCcEEEEEeChHHHHHHHHhccCCCceeEEe
Confidence 46789999999998874 4699999999999999999998877655543
No 37
>PLN02578 hydrolase
Probab=98.84 E-value=1.1e-08 Score=59.25 Aligned_cols=41 Identities=15% Similarity=0.184 Sum_probs=32.5
Q ss_pred HHHHHHHhcCCCcEEEEEEchHHHHHHHHHhhcCCceeEee
Q 038643 10 ASVDWLKANGSKKVGMVGYCMGSALTIACSASLMERKHTFR 50 (52)
Q Consensus 10 ~~~~~l~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~ 50 (52)
.+.++++....+++.++||||||.+++.+|.++|+.++++.
T Consensus 141 ~l~~~i~~~~~~~~~lvG~S~Gg~ia~~~A~~~p~~v~~lv 181 (354)
T PLN02578 141 QVADFVKEVVKEPAVLVGNSLGGFTALSTAVGYPELVAGVA 181 (354)
T ss_pred HHHHHHHHhccCCeEEEEECHHHHHHHHHHHhChHhcceEE
Confidence 34444544445789999999999999999999999877665
No 38
>PLN02511 hydrolase
Probab=98.84 E-value=1.8e-08 Score=59.32 Aligned_cols=43 Identities=16% Similarity=0.279 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHHHHhc-CCCcEEEEEEchHHHHHHHHHhhcCCc
Q 038643 3 GVVADISASVDWLKAN-GSKKVGMVGYCMGSALTIACSASLMER 45 (52)
Q Consensus 3 ~~~~d~~~~~~~l~~~-~~~~i~l~G~S~GG~~a~~~a~~~p~~ 45 (52)
...+|+..++++++.+ +..++.++||||||.+++.++.++|+.
T Consensus 154 ~~~~Dl~~~i~~l~~~~~~~~~~lvG~SlGg~i~~~yl~~~~~~ 197 (388)
T PLN02511 154 SFTGDLRQVVDHVAGRYPSANLYAAGWSLGANILVNYLGEEGEN 197 (388)
T ss_pred CchHHHHHHHHHHHHHCCCCCEEEEEechhHHHHHHHHHhcCCC
Confidence 4578999999999876 346899999999999999999998864
No 39
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=98.84 E-value=4.1e-09 Score=56.28 Aligned_cols=42 Identities=19% Similarity=0.311 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEEchHHHHHHHHHhhcCCceeEe
Q 038643 5 VADISASVDWLKANGSKKVGMVGYCMGSALTIACSASLMERKHTF 49 (52)
Q Consensus 5 ~~d~~~~~~~l~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~ 49 (52)
.+|+...++. ...+++.++||||||.+++.++.++|+.+..+
T Consensus 66 ~~~~~~~i~~---~~~~~v~liG~S~Gg~~a~~~a~~~p~~v~~l 107 (251)
T TIGR02427 66 ADDVLALLDH---LGIERAVFCGLSLGGLIAQGLAARRPDRVRAL 107 (251)
T ss_pred HHHHHHHHHH---hCCCceEEEEeCchHHHHHHHHHHCHHHhHHH
Confidence 4444444443 34578999999999999999999988765543
No 40
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=98.84 E-value=2.6e-08 Score=52.99 Aligned_cols=32 Identities=25% Similarity=0.409 Sum_probs=27.8
Q ss_pred CCCcEEEEEEchHHHHHHHHHhhcCCceeEee
Q 038643 19 GSKKVGMVGYCMGSALTIACSASLMERKHTFR 50 (52)
Q Consensus 19 ~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~ 50 (52)
+.+++.++||||||.+++.++.++|+.+.++.
T Consensus 68 ~~~~~~l~G~S~Gg~ia~~~a~~~~~~v~~li 99 (251)
T TIGR03695 68 GIEPFFLVGYSMGGRIALYYALQYPERVQGLI 99 (251)
T ss_pred CCCeEEEEEeccHHHHHHHHHHhCchheeeeE
Confidence 46789999999999999999999998766654
No 41
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=98.82 E-value=1.9e-08 Score=55.24 Aligned_cols=43 Identities=21% Similarity=0.281 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEchHHHHHHHHHhhcCCceeEe
Q 038643 4 VVADISASVDWLKANGSKKVGMVGYCMGSALTIACSASLMERKHTF 49 (52)
Q Consensus 4 ~~~d~~~~~~~l~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~ 49 (52)
..+|+.++++ ....++++++||||||.+++.++.++|+++.++
T Consensus 81 ~~~~l~~~i~---~~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~ 123 (278)
T TIGR03056 81 MAEDLSALCA---AEGLSPDGVIGHSAGAAIALRLALDGPVTPRMV 123 (278)
T ss_pred HHHHHHHHHH---HcCCCCceEEEECccHHHHHHHHHhCCcccceE
Confidence 3445554443 333568899999999999999999999865543
No 42
>KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=98.81 E-value=1e-08 Score=60.35 Aligned_cols=40 Identities=25% Similarity=0.374 Sum_probs=34.2
Q ss_pred HHHHHhcCCCcEEEEEEchHHHHHHHHHhhcCCceeEeee
Q 038643 12 VDWLKANGSKKVGMVGYCMGSALTIACSASLMERKHTFRM 51 (52)
Q Consensus 12 ~~~l~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~~ 51 (52)
=+|-..++.++..++||||||+++..+|.++|+++..+.+
T Consensus 151 E~WR~~~~L~KmilvGHSfGGYLaa~YAlKyPerV~kLiL 190 (365)
T KOG4409|consen 151 EQWRKKMGLEKMILVGHSFGGYLAAKYALKYPERVEKLIL 190 (365)
T ss_pred HHHHHHcCCcceeEeeccchHHHHHHHHHhChHhhceEEE
Confidence 3555556678999999999999999999999999888765
No 43
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=98.80 E-value=2.8e-08 Score=59.12 Aligned_cols=42 Identities=14% Similarity=0.176 Sum_probs=34.6
Q ss_pred HHHHHHHHHhcC---CCcEEEEEEchHHHHHHHHHhhcCCceeEe
Q 038643 8 ISASVDWLKANG---SKKVGMVGYCMGSALTIACSASLMERKHTF 49 (52)
Q Consensus 8 ~~~~~~~l~~~~---~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~ 49 (52)
...+++++.+++ .++|+++||||||.+++.+|..+|++++++
T Consensus 249 ~~avld~l~~~~~vd~~ri~l~G~S~GG~~Al~~A~~~p~ri~a~ 293 (414)
T PRK05077 249 HQAVLNALPNVPWVDHTRVAAFGFRFGANVAVRLAYLEPPRLKAV 293 (414)
T ss_pred HHHHHHHHHhCcccCcccEEEEEEChHHHHHHHHHHhCCcCceEE
Confidence 357889998773 579999999999999999999888765544
No 44
>PRK10985 putative hydrolase; Provisional
Probab=98.80 E-value=2.8e-08 Score=57.07 Aligned_cols=48 Identities=19% Similarity=0.303 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHhc-CCCcEEEEEEchHHHHHHHHHhhcCC---ceeEeee
Q 038643 4 VVADISASVDWLKAN-GSKKVGMVGYCMGSALTIACSASLME---RKHTFRM 51 (52)
Q Consensus 4 ~~~d~~~~~~~l~~~-~~~~i~l~G~S~GG~~a~~~a~~~p~---~~~~~~~ 51 (52)
..+|+..++++++++ +..++.++||||||.++..+++++++ ..+++.+
T Consensus 113 ~~~D~~~~i~~l~~~~~~~~~~~vG~S~GG~i~~~~~~~~~~~~~~~~~v~i 164 (324)
T PRK10985 113 ETEDARFFLRWLQREFGHVPTAAVGYSLGGNMLACLLAKEGDDLPLDAAVIV 164 (324)
T ss_pred chHHHHHHHHHHHHhCCCCCEEEEEecchHHHHHHHHHhhCCCCCccEEEEE
Confidence 568999999999876 45789999999999988888777643 3445544
No 45
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=98.80 E-value=2.5e-08 Score=56.68 Aligned_cols=46 Identities=17% Similarity=0.273 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHhc---CCCcEEEEEEchHHHHHHHHHhhcCCceeEee
Q 038643 5 VADISASVDWLKAN---GSKKVGMVGYCMGSALTIACSASLMERKHTFR 50 (52)
Q Consensus 5 ~~d~~~~~~~l~~~---~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~ 50 (52)
.+++..+++++.+. +.+++.++||||||.++..++.+.|++++.+.
T Consensus 93 ~~~la~~l~~L~~~~g~~~~~i~lIGhSlGa~vAg~~a~~~~~~v~~iv 141 (275)
T cd00707 93 GAELAKFLDFLVDNTGLSLENVHLIGHSLGAHVAGFAGKRLNGKLGRIT 141 (275)
T ss_pred HHHHHHHHHHHHHhcCCChHHEEEEEecHHHHHHHHHHHHhcCccceeE
Confidence 45777888888765 35789999999999999999998887665543
No 46
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=98.80 E-value=9.4e-09 Score=58.37 Aligned_cols=44 Identities=30% Similarity=0.280 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEEchHHHHHHHHHhhcCCceeEeee
Q 038643 5 VADISASVDWLKANGSKKVGMVGYCMGSALTIACSASLMERKHTFRM 51 (52)
Q Consensus 5 ~~d~~~~~~~l~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~~ 51 (52)
.+|+..+++.+ +.+++.++||||||.+++.++.++|+.+.++++
T Consensus 82 ~~dl~~l~~~l---~~~~~~lvG~S~GG~ia~~~a~~~p~~v~~lvl 125 (306)
T TIGR01249 82 VADIEKLREKL---GIKNWLVFGGSWGSTLALAYAQTHPEVVTGLVL 125 (306)
T ss_pred HHHHHHHHHHc---CCCCEEEEEECHHHHHHHHHHHHChHhhhhhee
Confidence 34444444333 357899999999999999999999987665543
No 47
>PRK06489 hypothetical protein; Provisional
Probab=98.80 E-value=1.8e-08 Score=58.48 Aligned_cols=33 Identities=15% Similarity=0.200 Sum_probs=27.6
Q ss_pred cCCCcEE-EEEEchHHHHHHHHHhhcCCceeEee
Q 038643 18 NGSKKVG-MVGYCMGSALTIACSASLMERKHTFR 50 (52)
Q Consensus 18 ~~~~~i~-l~G~S~GG~~a~~~a~~~p~~~~~~~ 50 (52)
.+.+++. ++||||||.+++.++.++|+++.+++
T Consensus 150 lgi~~~~~lvG~SmGG~vAl~~A~~~P~~V~~LV 183 (360)
T PRK06489 150 LGVKHLRLILGTSMGGMHAWMWGEKYPDFMDALM 183 (360)
T ss_pred cCCCceeEEEEECHHHHHHHHHHHhCchhhheee
Confidence 3456774 89999999999999999999877655
No 48
>PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A.
Probab=98.78 E-value=1.4e-08 Score=60.31 Aligned_cols=44 Identities=23% Similarity=0.295 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHhcC---CCcEEEEEEchHHHHHHHHHhhcCCceeEe
Q 038643 5 VADISASVDWLKANG---SKKVGMVGYCMGSALTIACSASLMERKHTF 49 (52)
Q Consensus 5 ~~d~~~~~~~l~~~~---~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~ 49 (52)
++|+ .++|||++++ +++|+++|+||||..++.+++..+++.+++
T Consensus 208 ~ddm-r~lDfL~slpeVD~~RIG~~GfSmGg~~a~~LaALDdRIka~v 254 (390)
T PF12715_consen 208 WDDM-RALDFLASLPEVDPDRIGCMGFSMGGYRAWWLAALDDRIKATV 254 (390)
T ss_dssp HHHH-HHHHHHCT-TTEEEEEEEEEEEGGGHHHHHHHHHH-TT--EEE
T ss_pred HHHH-HHHHHHhcCcccCccceEEEeecccHHHHHHHHHcchhhHhHh
Confidence 3444 4899999996 689999999999999999999988776654
No 49
>PRK03204 haloalkane dehalogenase; Provisional
Probab=98.78 E-value=2.9e-08 Score=56.05 Aligned_cols=33 Identities=15% Similarity=0.246 Sum_probs=28.9
Q ss_pred CCCcEEEEEEchHHHHHHHHHhhcCCceeEeee
Q 038643 19 GSKKVGMVGYCMGSALTIACSASLMERKHTFRM 51 (52)
Q Consensus 19 ~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~~ 51 (52)
+.+++.++||||||.+++.++..+|++++++++
T Consensus 99 ~~~~~~lvG~S~Gg~va~~~a~~~p~~v~~lvl 131 (286)
T PRK03204 99 GLDRYLSMGQDWGGPISMAVAVERADRVRGVVL 131 (286)
T ss_pred CCCCEEEEEECccHHHHHHHHHhChhheeEEEE
Confidence 457899999999999999999999998877653
No 50
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=98.76 E-value=4.4e-08 Score=57.61 Aligned_cols=49 Identities=16% Similarity=0.354 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHHHhcCCCcEEEEEEchHHHHHHHHHhhcCCceeEeee
Q 038643 3 GVVADISASVDWLKANGSKKVGMVGYCMGSALTIACSASLMERKHTFRM 51 (52)
Q Consensus 3 ~~~~d~~~~~~~l~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~~ 51 (52)
..+.+....++|+++++..++++.|.||||.+|...++..|..++.++.
T Consensus 157 ~~i~E~~~Ll~Wl~~~G~~~~g~~G~SmGG~~A~laa~~~p~pv~~vp~ 205 (348)
T PF09752_consen 157 ATILESRALLHWLEREGYGPLGLTGISMGGHMAALAASNWPRPVALVPC 205 (348)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEEechhHhhHHhhhhcCCCceeEEEe
Confidence 4567889999999999888999999999999999999999998887763
No 51
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=98.76 E-value=2.6e-08 Score=59.03 Aligned_cols=38 Identities=13% Similarity=0.196 Sum_probs=30.7
Q ss_pred HHHHhcCCCcEE-EEEEchHHHHHHHHHhhcCCceeEee
Q 038643 13 DWLKANGSKKVG-MVGYCMGSALTIACSASLMERKHTFR 50 (52)
Q Consensus 13 ~~l~~~~~~~i~-l~G~S~GG~~a~~~a~~~p~~~~~~~ 50 (52)
+.++..+.+++. ++||||||++++.++.++|+++..++
T Consensus 152 ~ll~~lgi~~~~~vvG~SmGG~ial~~a~~~P~~v~~lv 190 (389)
T PRK06765 152 ELIKSLGIARLHAVMGPSMGGMQAQEWAVHYPHMVERMI 190 (389)
T ss_pred HHHHHcCCCCceEEEEECHHHHHHHHHHHHChHhhheEE
Confidence 444445667775 99999999999999999999876654
No 52
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=98.76 E-value=3.2e-08 Score=57.57 Aligned_cols=39 Identities=15% Similarity=0.245 Sum_probs=30.0
Q ss_pred HHHHHhcCCCcEEEEEEchHHHHHHHHHhh-cCCceeEee
Q 038643 12 VDWLKANGSKKVGMVGYCMGSALTIACSAS-LMERKHTFR 50 (52)
Q Consensus 12 ~~~l~~~~~~~i~l~G~S~GG~~a~~~a~~-~p~~~~~~~ 50 (52)
.+++.....+++.++||||||.+++.++.. +|+++.+++
T Consensus 146 ~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~~~P~rV~~LV 185 (360)
T PLN02679 146 LDFLEEVVQKPTVLIGNSVGSLACVIAASESTRDLVRGLV 185 (360)
T ss_pred HHHHHHhcCCCeEEEEECHHHHHHHHHHHhcChhhcCEEE
Confidence 344444456799999999999999998874 688777665
No 53
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=98.75 E-value=4.4e-08 Score=59.51 Aligned_cols=37 Identities=16% Similarity=0.227 Sum_probs=30.7
Q ss_pred HHhcCCCcEEEEEEchHHHHHHHHHhhcCCceeEeee
Q 038643 15 LKANGSKKVGMVGYCMGSALTIACSASLMERKHTFRM 51 (52)
Q Consensus 15 l~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~~ 51 (52)
+...+.+++.++||||||.+++.++.++|+++..+.+
T Consensus 268 l~~lg~~k~~LVGhSmGG~iAl~~A~~~Pe~V~~LVL 304 (481)
T PLN03087 268 LERYKVKSFHIVAHSLGCILALALAVKHPGAVKSLTL 304 (481)
T ss_pred HHHcCCCCEEEEEECHHHHHHHHHHHhChHhccEEEE
Confidence 3334568999999999999999999999998777654
No 54
>PRK11460 putative hydrolase; Provisional
Probab=98.74 E-value=7.3e-08 Score=53.44 Aligned_cols=42 Identities=7% Similarity=0.245 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhcC---CCcEEEEEEchHHHHHHHHHhhcCCceeE
Q 038643 7 DISASVDWLKANG---SKKVGMVGYCMGSALTIACSASLMERKHT 48 (52)
Q Consensus 7 d~~~~~~~l~~~~---~~~i~l~G~S~GG~~a~~~a~~~p~~~~~ 48 (52)
.+.+.++++.++. .++|+++|||+||.+++.++.++|+..+.
T Consensus 86 ~l~~~i~~~~~~~~~~~~~i~l~GfS~Gg~~al~~a~~~~~~~~~ 130 (232)
T PRK11460 86 TFIETVRYWQQQSGVGASATALIGFSQGAIMALEAVKAEPGLAGR 130 (232)
T ss_pred HHHHHHHHHHHhcCCChhhEEEEEECHHHHHHHHHHHhCCCcceE
Confidence 3444555555442 46899999999999999999888887664
No 55
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=98.73 E-value=1.1e-07 Score=48.24 Aligned_cols=46 Identities=15% Similarity=0.226 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHh--cCCCcEEEEEEchHHHHHHHHHhhcCCceeEeee
Q 038643 6 ADISASVDWLKA--NGSKKVGMVGYCMGSALTIACSASLMERKHTFRM 51 (52)
Q Consensus 6 ~d~~~~~~~l~~--~~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~~ 51 (52)
.++..+++++.. ...++++++|||+||.+++.++.++|+..+.+.+
T Consensus 44 ~~~~~~~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~~~~~~~v~~~v~~ 91 (145)
T PF12695_consen 44 DAVERVLADIRAGYPDPDRIILIGHSMGGAIAANLAARNPRVKAVVLL 91 (145)
T ss_dssp HHHHHHHHHHHHHHCTCCEEEEEEETHHHHHHHHHHHHSTTESEEEEE
T ss_pred HHHHHHHHHHHhhcCCCCcEEEEEEccCcHHHHHHhhhccceeEEEEe
Confidence 356666666532 2478999999999999999999988666666554
No 56
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=98.73 E-value=3.6e-08 Score=57.75 Aligned_cols=39 Identities=21% Similarity=0.288 Sum_probs=30.3
Q ss_pred HHHHhcCCCc-EEEEEEchHHHHHHHHHhhcCCceeEeee
Q 038643 13 DWLKANGSKK-VGMVGYCMGSALTIACSASLMERKHTFRM 51 (52)
Q Consensus 13 ~~l~~~~~~~-i~l~G~S~GG~~a~~~a~~~p~~~~~~~~ 51 (52)
+.++..+.++ ..++||||||.+++.++.++|+++..+++
T Consensus 138 ~~l~~l~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lvl 177 (379)
T PRK00175 138 RLLDALGITRLAAVVGGSMGGMQALEWAIDYPDRVRSALV 177 (379)
T ss_pred HHHHHhCCCCceEEEEECHHHHHHHHHHHhChHhhhEEEE
Confidence 3333345567 58999999999999999999998776553
No 57
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=98.69 E-value=1.1e-07 Score=56.39 Aligned_cols=48 Identities=17% Similarity=0.212 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHHHhc-CCCcEEEEEEchHHHHHHHHHhhcCC---ceeEeee
Q 038643 3 GVVADISASVDWLKAN-GSKKVGMVGYCMGSALTIACSASLME---RKHTFRM 51 (52)
Q Consensus 3 ~~~~d~~~~~~~l~~~-~~~~i~l~G~S~GG~~a~~~a~~~p~---~~~~~~~ 51 (52)
...+|+..+++++... +..+++++||||||.+++.++ .+|+ .+.++.+
T Consensus 189 ~~~~Dl~~~l~~l~~~~~~~~i~lvGhSmGG~ial~~a-~~p~~~~~v~glVL 240 (395)
T PLN02652 189 YVVEDTEAFLEKIRSENPGVPCFLFGHSTGGAVVLKAA-SYPSIEDKLEGIVL 240 (395)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEECHHHHHHHHHH-hccCcccccceEEE
Confidence 4578999999998765 345899999999999999876 4554 4555544
No 58
>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=98.68 E-value=6.1e-08 Score=56.27 Aligned_cols=48 Identities=19% Similarity=0.070 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHHHhcC---CCcEEEEEEchHHHHHHHHHhhcCCceeEee
Q 038643 3 GVVADISASVDWLKANG---SKKVGMVGYCMGSALTIACSASLMERKHTFR 50 (52)
Q Consensus 3 ~~~~d~~~~~~~l~~~~---~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~ 50 (52)
..++|+...++.++.+. ..+.+++||||||++++.++.++|...+++.
T Consensus 108 ~~v~D~~~~~~~i~~~~e~~~lp~FL~GeSMGGAV~Ll~~~k~p~~w~G~i 158 (313)
T KOG1455|consen 108 LVVDDVISFFDSIKEREENKGLPRFLFGESMGGAVALLIALKDPNFWDGAI 158 (313)
T ss_pred HHHHHHHHHHHHHhhccccCCCCeeeeecCcchHHHHHHHhhCCcccccce
Confidence 46788888888776663 4678999999999999999999998766544
No 59
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=98.67 E-value=5e-08 Score=55.46 Aligned_cols=47 Identities=19% Similarity=0.371 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHHhcC--CCcEEEEEEchHHHHHHHHHhhcCCceeEeee
Q 038643 3 GVVADISASVDWLKANG--SKKVGMVGYCMGSALTIACSASLMERKHTFRM 51 (52)
Q Consensus 3 ~~~~d~~~~~~~l~~~~--~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~~ 51 (52)
...+|+.++.+||++.. .++|+++|+|+|...++.+|++.| .+++++
T Consensus 110 n~y~Di~avye~Lr~~~g~~~~Iil~G~SiGt~~tv~Lasr~~--~~alVL 158 (258)
T KOG1552|consen 110 NLYADIKAVYEWLRNRYGSPERIILYGQSIGTVPTVDLASRYP--LAAVVL 158 (258)
T ss_pred cchhhHHHHHHHHHhhcCCCceEEEEEecCCchhhhhHhhcCC--cceEEE
Confidence 35789999999999985 589999999999999999999998 555443
No 60
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=98.66 E-value=1.3e-07 Score=53.40 Aligned_cols=31 Identities=16% Similarity=0.277 Sum_probs=27.2
Q ss_pred CCcEEEEEEchHHHHHHHHHhhcCCceeEee
Q 038643 20 SKKVGMVGYCMGSALTIACSASLMERKHTFR 50 (52)
Q Consensus 20 ~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~ 50 (52)
.+++.++||||||.+++.++.++|+..+++.
T Consensus 137 ~~~~~~~G~S~GG~~a~~~a~~~p~~~~~~~ 167 (275)
T TIGR02821 137 GERQGITGHSMGGHGALVIALKNPDRFKSVS 167 (275)
T ss_pred CCceEEEEEChhHHHHHHHHHhCcccceEEE
Confidence 5789999999999999999999998766553
No 61
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=98.66 E-value=1.2e-07 Score=52.92 Aligned_cols=47 Identities=21% Similarity=0.226 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHhcC---CCcEEEEEEchHHHHHHHHHhhcCCceeEeee
Q 038643 5 VADISASVDWLKANG---SKKVGMVGYCMGSALTIACSASLMERKHTFRM 51 (52)
Q Consensus 5 ~~d~~~~~~~l~~~~---~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~~ 51 (52)
...+..+++++..+. +.||.+.|+|.||+++..++..+|+..+++.+
T Consensus 78 ~~~i~~lv~~v~~~~~iD~~RVyv~G~S~Gg~ma~~la~~~pd~faa~a~ 127 (220)
T PF10503_consen 78 VAFIAALVDYVAARYNIDPSRVYVTGLSNGGMMANVLACAYPDLFAAVAV 127 (220)
T ss_pred hhhHHHHHHhHhhhcccCCCceeeEEECHHHHHHHHHHHhCCccceEEEe
Confidence 455777888887763 68999999999999999999999999887654
No 62
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=98.66 E-value=1.4e-07 Score=54.84 Aligned_cols=48 Identities=27% Similarity=0.342 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHHHhcC---CCcEEEEEEchHHHHHHHHHhhcCCceeEee
Q 038643 3 GVVADISASVDWLKANG---SKKVGMVGYCMGSALTIACSASLMERKHTFR 50 (52)
Q Consensus 3 ~~~~d~~~~~~~l~~~~---~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~ 50 (52)
..+.|...+++++.+++ .++|++.|.|+||.+++.+|+.+|++.++++
T Consensus 154 ~~~~D~~ravd~l~slpevD~~rI~v~G~SqGG~lal~~aaLd~rv~~~~~ 204 (320)
T PF05448_consen 154 RVYLDAVRAVDFLRSLPEVDGKRIGVTGGSQGGGLALAAAALDPRVKAAAA 204 (320)
T ss_dssp HHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSST-SEEEE
T ss_pred HHHHHHHHHHHHHHhCCCcCcceEEEEeecCchHHHHHHHHhCccccEEEe
Confidence 35689999999999986 5799999999999999999999988766654
No 63
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=98.66 E-value=5.3e-08 Score=53.75 Aligned_cols=44 Identities=23% Similarity=0.443 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHHhcC-CCcE-EEEEEchHHHHHHHHHhhcCCce
Q 038643 3 GVVADISASVDWLKANG-SKKV-GMVGYCMGSALTIACSASLMERK 46 (52)
Q Consensus 3 ~~~~d~~~~~~~l~~~~-~~~i-~l~G~S~GG~~a~~~a~~~p~~~ 46 (52)
++.+|..+++||++++. ..+. .+.|+|+|+.+++.++.+.|+..
T Consensus 83 GE~~Da~aaldW~~~~hp~s~~~~l~GfSFGa~Ia~~la~r~~e~~ 128 (210)
T COG2945 83 GELEDAAAALDWLQARHPDSASCWLAGFSFGAYIAMQLAMRRPEIL 128 (210)
T ss_pred chHHHHHHHHHHHHhhCCCchhhhhcccchHHHHHHHHHHhccccc
Confidence 57899999999999984 3333 67899999999999999987753
No 64
>PRK11071 esterase YqiA; Provisional
Probab=98.66 E-value=1.5e-07 Score=50.95 Aligned_cols=30 Identities=23% Similarity=0.393 Sum_probs=25.1
Q ss_pred HHhcCCCcEEEEEEchHHHHHHHHHhhcCC
Q 038643 15 LKANGSKKVGMVGYCMGSALTIACSASLME 44 (52)
Q Consensus 15 l~~~~~~~i~l~G~S~GG~~a~~~a~~~p~ 44 (52)
+++.+.+++.++||||||.+++.++.++|.
T Consensus 55 ~~~~~~~~~~lvG~S~Gg~~a~~~a~~~~~ 84 (190)
T PRK11071 55 VLEHGGDPLGLVGSSLGGYYATWLSQCFML 84 (190)
T ss_pred HHHcCCCCeEEEEECHHHHHHHHHHHHcCC
Confidence 333346789999999999999999999884
No 65
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=98.65 E-value=2.1e-07 Score=56.20 Aligned_cols=47 Identities=17% Similarity=0.392 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHhc---CCCcEEEEEEchHHHHHHHHHhhcCCceeEee
Q 038643 4 VVADISASVDWLKAN---GSKKVGMVGYCMGSALTIACSASLMERKHTFR 50 (52)
Q Consensus 4 ~~~d~~~~~~~l~~~---~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~ 50 (52)
..+++..++++|.+. +.+++.++||||||.++..++.+.|+++..+.
T Consensus 99 vg~~la~lI~~L~~~~gl~l~~VhLIGHSLGAhIAg~ag~~~p~rV~rIt 148 (442)
T TIGR03230 99 VGKDVAKFVNWMQEEFNYPWDNVHLLGYSLGAHVAGIAGSLTKHKVNRIT 148 (442)
T ss_pred HHHHHHHHHHHHHHhhCCCCCcEEEEEECHHHHHHHHHHHhCCcceeEEE
Confidence 345677888887643 36899999999999999999988888766554
No 66
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=98.65 E-value=1.4e-07 Score=54.14 Aligned_cols=38 Identities=26% Similarity=0.431 Sum_probs=29.9
Q ss_pred HHHHhcCCCcEEEEEEchHHHHHHHHHhhcCCceeEee
Q 038643 13 DWLKANGSKKVGMVGYCMGSALTIACSASLMERKHTFR 50 (52)
Q Consensus 13 ~~l~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~ 50 (52)
+++...+..++.++||||||.+++.++.++|+.+..+.
T Consensus 189 ~~~~~~~~~~~~lvG~S~Gg~~a~~~a~~~~~~v~~lv 226 (371)
T PRK14875 189 AFLDALGIERAHLVGHSMGGAVALRLAARAPQRVASLT 226 (371)
T ss_pred HHHHhcCCccEEEEeechHHHHHHHHHHhCchheeEEE
Confidence 33444445789999999999999999999987766654
No 67
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=98.63 E-value=1.9e-07 Score=52.58 Aligned_cols=49 Identities=24% Similarity=0.316 Sum_probs=40.4
Q ss_pred hhHHHHHHHHHHHHHhcC--CCcEEEEEEchHHHHHHHHHhhcCCc-eeEee
Q 038643 2 VGVVADISASVDWLKANG--SKKVGMVGYCMGSALTIACSASLMER-KHTFR 50 (52)
Q Consensus 2 ~~~~~d~~~~~~~l~~~~--~~~i~l~G~S~GG~~a~~~a~~~p~~-~~~~~ 50 (52)
+.+.+|..++++|+..++ ..+|+++|.|.+|...+..|+..|.. ++.++
T Consensus 80 ~~e~~D~~d~I~W~~~Qpws~G~VGm~G~SY~G~~q~~~A~~~~p~LkAi~p 131 (272)
T PF02129_consen 80 PNEAQDGYDTIEWIAAQPWSNGKVGMYGISYGGFTQWAAAARRPPHLKAIVP 131 (272)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEEEEEETHHHHHHHHHHTTT-TTEEEEEE
T ss_pred hhHHHHHHHHHHHHHhCCCCCCeEEeeccCHHHHHHHHHHhcCCCCceEEEe
Confidence 467899999999999996 57999999999999999999965554 44443
No 68
>KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=98.60 E-value=8.2e-08 Score=55.73 Aligned_cols=40 Identities=25% Similarity=0.309 Sum_probs=33.5
Q ss_pred hhHHHHHHHHHHHHHhcCCCcEEEEEEchHHHHHHHHHhh
Q 038643 2 VGVVADISASVDWLKANGSKKVGMVGYCMGSALTIACSAS 41 (52)
Q Consensus 2 ~~~~~d~~~~~~~l~~~~~~~i~l~G~S~GG~~a~~~a~~ 41 (52)
|....|+.+.++++-...+.+|.++||||||.++...+..
T Consensus 127 eT~~KD~~~~i~~~fge~~~~iilVGHSmGGaIav~~a~~ 166 (343)
T KOG2564|consen 127 ETMSKDFGAVIKELFGELPPQIILVGHSMGGAIAVHTAAS 166 (343)
T ss_pred HHHHHHHHHHHHHHhccCCCceEEEeccccchhhhhhhhh
Confidence 5678899998888775557889999999999999887754
No 69
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=98.60 E-value=9.5e-08 Score=59.14 Aligned_cols=48 Identities=21% Similarity=0.249 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHHHhcC---CCcEEEEEEchHHHHHHHHHhhcCCceeEee
Q 038643 3 GVVADISASVDWLKANG---SKKVGMVGYCMGSALTIACSASLMERKHTFR 50 (52)
Q Consensus 3 ~~~~d~~~~~~~l~~~~---~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~ 50 (52)
...+|+.++++++.+.+ .+|++++|+|.||.+++..+.+.|...++++
T Consensus 452 ~~~~D~~~~~~~l~~~~~~d~~ri~i~G~SyGGymtl~~~~~~~~f~a~~~ 502 (620)
T COG1506 452 VDLEDLIAAVDALVKLPLVDPERIGITGGSYGGYMTLLAATKTPRFKAAVA 502 (620)
T ss_pred ccHHHHHHHHHHHHhCCCcChHHeEEeccChHHHHHHHHHhcCchhheEEe
Confidence 46789999999998886 5799999999999999999999987777765
No 70
>KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only]
Probab=98.60 E-value=1.3e-08 Score=57.14 Aligned_cols=50 Identities=38% Similarity=0.668 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHHHhcC-CCcEEEEEEchHHHHHHHHHhhcCCceeEeeeC
Q 038643 3 GVVADISASVDWLKANG-SKKVGMVGYCMGSALTIACSASLMERKHTFRMN 52 (52)
Q Consensus 3 ~~~~d~~~~~~~l~~~~-~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~~~ 52 (52)
...+|+..+++||+.++ ..+|+++|+||||.++..+....|+..++++++
T Consensus 101 ~~~~~i~~v~k~lk~~g~~kkIGv~GfCwGak~vv~~~~~~~~f~a~v~~h 151 (242)
T KOG3043|consen 101 KIWKDITAVVKWLKNHGDSKKIGVVGFCWGAKVVVTLSAKDPEFDAGVSFH 151 (242)
T ss_pred cchhHHHHHHHHHHHcCCcceeeEEEEeecceEEEEeeccchhheeeeEec
Confidence 46789999999999886 789999999999999999998888877777664
No 71
>PLN02442 S-formylglutathione hydrolase
Probab=98.58 E-value=3.9e-07 Score=51.80 Aligned_cols=31 Identities=10% Similarity=0.196 Sum_probs=27.1
Q ss_pred CCCcEEEEEEchHHHHHHHHHhhcCCceeEe
Q 038643 19 GSKKVGMVGYCMGSALTIACSASLMERKHTF 49 (52)
Q Consensus 19 ~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~ 49 (52)
..++++++||||||..++.++.++|+..+++
T Consensus 141 ~~~~~~i~G~S~GG~~a~~~a~~~p~~~~~~ 171 (283)
T PLN02442 141 DTSRASIFGHSMGGHGALTIYLKNPDKYKSV 171 (283)
T ss_pred CCCceEEEEEChhHHHHHHHHHhCchhEEEE
Confidence 4678999999999999999999999886644
No 72
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=98.58 E-value=2.3e-07 Score=57.36 Aligned_cols=46 Identities=24% Similarity=0.373 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHhc-CCCcEEEEEEchHHHHHHH----HHhhcCC-ceeEee
Q 038643 5 VADISASVDWLKAN-GSKKVGMVGYCMGSALTIA----CSASLME-RKHTFR 50 (52)
Q Consensus 5 ~~d~~~~~~~l~~~-~~~~i~l~G~S~GG~~a~~----~a~~~p~-~~~~~~ 50 (52)
++.+.++++.+++. +.+++.++||||||.++.. +++++++ +++.++
T Consensus 271 v~~i~~Ald~V~~~tG~~~vnl~GyC~GGtl~a~~~a~~aA~~~~~~V~slt 322 (560)
T TIGR01839 271 VDALKEAVDAVRAITGSRDLNLLGACAGGLTCAALVGHLQALGQLRKVNSLT 322 (560)
T ss_pred HHHHHHHHHHHHHhcCCCCeeEEEECcchHHHHHHHHHHHhcCCCCceeeEE
Confidence 45778888888777 4689999999999999987 7788885 677665
No 73
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=98.54 E-value=6e-07 Score=49.07 Aligned_cols=44 Identities=14% Similarity=0.147 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhc--CCCcEEEEEEchHHHHHHHHHhhcCCceeEee
Q 038643 7 DISASVDWLKAN--GSKKVGMVGYCMGSALTIACSASLMERKHTFR 50 (52)
Q Consensus 7 d~~~~~~~l~~~--~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~ 50 (52)
-+...++...+. +.++|++.|+|+||.+++.++.++|+..+++.
T Consensus 89 ~l~~li~~~~~~~i~~~ri~l~GFSQGa~~al~~~l~~p~~~~gvv 134 (216)
T PF02230_consen 89 RLDELIDEEVAYGIDPSRIFLGGFSQGAAMALYLALRYPEPLAGVV 134 (216)
T ss_dssp HHHHHHHHHHHTT--GGGEEEEEETHHHHHHHHHHHCTSSTSSEEE
T ss_pred HHHHHHHHHHHcCCChhheehhhhhhHHHHHHHHHHHcCcCcCEEE
Confidence 344444433333 35799999999999999999999998766543
No 74
>PLN02733 phosphatidylcholine-sterol O-acyltransferase
Probab=98.53 E-value=3.1e-07 Score=55.40 Aligned_cols=43 Identities=16% Similarity=0.242 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHHHhc-CCCcEEEEEEchHHHHHHHHHhhcCCc
Q 038643 3 GVVADISASVDWLKAN-GSKKVGMVGYCMGSALTIACSASLMER 45 (52)
Q Consensus 3 ~~~~d~~~~~~~l~~~-~~~~i~l~G~S~GG~~a~~~a~~~p~~ 45 (52)
...+++...++.+.+. +..++.++||||||.++..++..+|+.
T Consensus 143 ~~~~~Lk~lIe~~~~~~g~~kV~LVGHSMGGlva~~fl~~~p~~ 186 (440)
T PLN02733 143 ETMDGLKKKLETVYKASGGKKVNIISHSMGGLLVKCFMSLHSDV 186 (440)
T ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEEECHhHHHHHHHHHHCCHh
Confidence 3456777777666544 468999999999999999999888763
No 75
>PLN02872 triacylglycerol lipase
Probab=98.52 E-value=3.1e-07 Score=54.64 Aligned_cols=40 Identities=15% Similarity=0.306 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEchHHHHHHHHHhhcCC
Q 038643 4 VVADISASVDWLKANGSKKVGMVGYCMGSALTIACSASLME 44 (52)
Q Consensus 4 ~~~d~~~~~~~l~~~~~~~i~l~G~S~GG~~a~~~a~~~p~ 44 (52)
...|+.++++++.+...+++.++||||||.+++.++ .+|+
T Consensus 143 a~~Dl~a~id~i~~~~~~~v~~VGhS~Gg~~~~~~~-~~p~ 182 (395)
T PLN02872 143 ALYDLAEMIHYVYSITNSKIFIVGHSQGTIMSLAAL-TQPN 182 (395)
T ss_pred HHHHHHHHHHHHHhccCCceEEEEECHHHHHHHHHh-hChH
Confidence 347999999999766557999999999999998555 5665
No 76
>PLN00021 chlorophyllase
Probab=98.50 E-value=6.4e-07 Score=51.94 Aligned_cols=41 Identities=20% Similarity=0.383 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHhc-----------CCCcEEEEEEchHHHHHHHHHhhcCC
Q 038643 4 VVADISASVDWLKAN-----------GSKKVGMVGYCMGSALTIACSASLME 44 (52)
Q Consensus 4 ~~~d~~~~~~~l~~~-----------~~~~i~l~G~S~GG~~a~~~a~~~p~ 44 (52)
..+|..++++|+.+. ..++++++||||||.+++.++..+|+
T Consensus 98 ~i~d~~~~~~~l~~~l~~~l~~~~~~d~~~v~l~GHS~GG~iA~~lA~~~~~ 149 (313)
T PLN00021 98 EIKDAAAVINWLSSGLAAVLPEGVRPDLSKLALAGHSRGGKTAFALALGKAA 149 (313)
T ss_pred hHHHHHHHHHHHHhhhhhhcccccccChhheEEEEECcchHHHHHHHhhccc
Confidence 356677778887752 13689999999999999999988774
No 77
>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=98.49 E-value=5.1e-07 Score=52.58 Aligned_cols=41 Identities=17% Similarity=0.222 Sum_probs=33.0
Q ss_pred HHHHHHHhcCCCcEEEEEEchHHHHHHHHHhhcCCceeEee
Q 038643 10 ASVDWLKANGSKKVGMVGYCMGSALTIACSASLMERKHTFR 50 (52)
Q Consensus 10 ~~~~~l~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~ 50 (52)
...+++.+...+++.++|||+||.++..+|+.+|+.+..++
T Consensus 117 ~i~~~~~~~~~~~~~lvghS~Gg~va~~~Aa~~P~~V~~lv 157 (326)
T KOG1454|consen 117 LIRRFVKEVFVEPVSLVGHSLGGIVALKAAAYYPETVDSLV 157 (326)
T ss_pred HHHHHHHhhcCcceEEEEeCcHHHHHHHHHHhCccccccee
Confidence 33344544446779999999999999999999999888776
No 78
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=98.49 E-value=4.5e-07 Score=52.48 Aligned_cols=41 Identities=15% Similarity=0.253 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHHh--------------------cC-CCcEEEEEEchHHHHHHHHHhhcC
Q 038643 3 GVVADISASVDWLKA--------------------NG-SKKVGMVGYCMGSALTIACSASLM 43 (52)
Q Consensus 3 ~~~~d~~~~~~~l~~--------------------~~-~~~i~l~G~S~GG~~a~~~a~~~p 43 (52)
..++|+...++.+++ .+ ..+++++||||||.+++.++.+++
T Consensus 103 ~~v~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~GhSmGg~i~~~~~~~~~ 164 (332)
T TIGR01607 103 DLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKENRLPMYIIGLSMGGNIALRLLELLG 164 (332)
T ss_pred HHHHHHHHHHHHhhhhhccccccccccccccccccccCCCceeEeeccCccHHHHHHHHHhc
Confidence 345777777777654 12 457999999999999999886553
No 79
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=98.48 E-value=3.7e-07 Score=61.38 Aligned_cols=34 Identities=21% Similarity=0.334 Sum_probs=29.1
Q ss_pred hcCCCcEEEEEEchHHHHHHHHHhhcCCceeEee
Q 038643 17 ANGSKKVGMVGYCMGSALTIACSASLMERKHTFR 50 (52)
Q Consensus 17 ~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~ 50 (52)
....+++.++||||||.+++.++.++|+.+..+.
T Consensus 1441 ~l~~~~v~LvGhSmGG~iAl~~A~~~P~~V~~lV 1474 (1655)
T PLN02980 1441 HITPGKVTLVGYSMGARIALYMALRFSDKIEGAV 1474 (1655)
T ss_pred HhCCCCEEEEEECHHHHHHHHHHHhChHhhCEEE
Confidence 3346789999999999999999999998877654
No 80
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=98.47 E-value=1e-06 Score=49.09 Aligned_cols=39 Identities=13% Similarity=0.190 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhc------CCCcEEEEEEchHHHHHHHHHhhc
Q 038643 4 VVADISASVDWLKAN------GSKKVGMVGYCMGSALTIACSASL 42 (52)
Q Consensus 4 ~~~d~~~~~~~l~~~------~~~~i~l~G~S~GG~~a~~~a~~~ 42 (52)
+.+.+..+++++.+. +.++|.++||||||.++..+....
T Consensus 62 q~~~~~~~i~~i~~~~~~~~~~~~~vilVgHSmGGlvar~~l~~~ 106 (225)
T PF07819_consen 62 QAEFLAEAIKYILELYKSNRPPPRSVILVGHSMGGLVARSALSLP 106 (225)
T ss_pred HHHHHHHHHHHHHHhhhhccCCCCceEEEEEchhhHHHHHHHhcc
Confidence 345555666665443 368999999999999988887654
No 81
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=98.46 E-value=5.9e-07 Score=53.25 Aligned_cols=44 Identities=18% Similarity=0.189 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEEchHHHHHHHHHhhcCCceeEeee
Q 038643 5 VADISASVDWLKANGSKKVGMVGYCMGSALTIACSASLMERKHTFRM 51 (52)
Q Consensus 5 ~~d~~~~~~~l~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~~ 51 (52)
.+|+..+++.+ ..+++.++||||||.+++.++.++|+++..+++
T Consensus 184 a~~l~~~i~~l---~~~~~~LvG~s~GG~ia~~~a~~~P~~v~~lIL 227 (383)
T PLN03084 184 VSSLESLIDEL---KSDKVSLVVQGYFSPPVVKYASAHPDKIKKLIL 227 (383)
T ss_pred HHHHHHHHHHh---CCCCceEEEECHHHHHHHHHHHhChHhhcEEEE
Confidence 44455444443 457899999999999999999999987776643
No 82
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=98.45 E-value=1.8e-06 Score=44.10 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=20.1
Q ss_pred CCCcEEEEEEchHHHHHHHHHhh
Q 038643 19 GSKKVGMVGYCMGSALTIACSAS 41 (52)
Q Consensus 19 ~~~~i~l~G~S~GG~~a~~~a~~ 41 (52)
+..++.+.|||+||.+|..++..
T Consensus 62 ~~~~i~itGHSLGGalA~l~a~~ 84 (140)
T PF01764_consen 62 PDYSIVITGHSLGGALASLAAAD 84 (140)
T ss_dssp TTSEEEEEEETHHHHHHHHHHHH
T ss_pred cCccchhhccchHHHHHHHHHHh
Confidence 45789999999999999998865
No 83
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=98.45 E-value=5.6e-07 Score=54.04 Aligned_cols=43 Identities=23% Similarity=0.344 Sum_probs=34.7
Q ss_pred HHHHHHHHHhcC---CCcEEEEEEchHHHHHHHHHhhcCCc-eeEee
Q 038643 8 ISASVDWLKANG---SKKVGMVGYCMGSALTIACSASLMER-KHTFR 50 (52)
Q Consensus 8 ~~~~~~~l~~~~---~~~i~l~G~S~GG~~a~~~a~~~p~~-~~~~~ 50 (52)
...++|||.+.+ ..+|+++|.||||.++.++|..++++ +++++
T Consensus 245 ~~aVLd~L~~~p~VD~~RV~~~G~SfGGy~AvRlA~le~~RlkavV~ 291 (411)
T PF06500_consen 245 HQAVLDYLASRPWVDHTRVGAWGFSFGGYYAVRLAALEDPRLKAVVA 291 (411)
T ss_dssp HHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHTTTT-SEEEE
T ss_pred HHHHHHHHhcCCccChhheEEEEeccchHHHHHHHHhcccceeeEee
Confidence 457889999986 57999999999999999999876554 44444
No 84
>PRK07868 acyl-CoA synthetase; Validated
Probab=98.43 E-value=8.9e-07 Score=57.13 Aligned_cols=42 Identities=21% Similarity=0.305 Sum_probs=29.2
Q ss_pred HHHHHHHHhcCCCcEEEEEEchHHHHHHHHHhhc-CCceeEee
Q 038643 9 SASVDWLKANGSKKVGMVGYCMGSALTIACSASL-MERKHTFR 50 (52)
Q Consensus 9 ~~~~~~l~~~~~~~i~l~G~S~GG~~a~~~a~~~-p~~~~~~~ 50 (52)
.++++.++....+++.++||||||.+++.+++.+ |++++.++
T Consensus 129 ~~~l~~v~~~~~~~v~lvG~s~GG~~a~~~aa~~~~~~v~~lv 171 (994)
T PRK07868 129 SEAIDTVKDVTGRDVHLVGYSQGGMFCYQAAAYRRSKDIASIV 171 (994)
T ss_pred HHHHHHHHHhhCCceEEEEEChhHHHHHHHHHhcCCCccceEE
Confidence 3344444334346899999999999999998755 44666554
No 85
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=98.42 E-value=7.9e-07 Score=51.99 Aligned_cols=45 Identities=29% Similarity=0.247 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHHHhcCCCcEEEEEEchHHHHHHHHHhhcCCceeEee
Q 038643 3 GVVADISASVDWLKANGSKKVGMVGYCMGSALTIACSASLMERKHTFR 50 (52)
Q Consensus 3 ~~~~d~~~~~~~l~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~ 50 (52)
....|+...++.+. .+|+.++||+||+.+++.++..+|+++.+++
T Consensus 98 ~l~~di~~lld~Lg---~~k~~lvgHDwGaivaw~la~~~Perv~~lv 142 (322)
T KOG4178|consen 98 ELVGDIVALLDHLG---LKKAFLVGHDWGAIVAWRLALFYPERVDGLV 142 (322)
T ss_pred HHHHHHHHHHHHhc---cceeEEEeccchhHHHHHHHHhChhhcceEE
Confidence 35667777777664 6899999999999999999999999876653
No 86
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=98.42 E-value=9.4e-07 Score=46.44 Aligned_cols=39 Identities=31% Similarity=0.393 Sum_probs=30.2
Q ss_pred HHHHhcCCCcEEEEEEchHHHHHHHHHhhcCCceeEeee
Q 038643 13 DWLKANGSKKVGMVGYCMGSALTIACSASLMERKHTFRM 51 (52)
Q Consensus 13 ~~l~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~~ 51 (52)
.++...+..++.++||||||.++..++.++|+.+..+.+
T Consensus 80 ~~~~~~~~~~~~l~G~S~Gg~~~~~~~~~~p~~~~~~v~ 118 (282)
T COG0596 80 ALLDALGLEKVVLVGHSMGGAVALALALRHPDRVRGLVL 118 (282)
T ss_pred HHHHHhCCCceEEEEecccHHHHHHHHHhcchhhheeeE
Confidence 334444456699999999999999999999987666543
No 87
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=98.41 E-value=1.1e-06 Score=54.06 Aligned_cols=45 Identities=29% Similarity=0.441 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhc-CCCcEEEEEEchHHHHHH----HHHhhc-CCceeEee
Q 038643 6 ADISASVDWLKAN-GSKKVGMVGYCMGSALTI----ACSASL-MERKHTFR 50 (52)
Q Consensus 6 ~d~~~~~~~l~~~-~~~~i~l~G~S~GG~~a~----~~a~~~-p~~~~~~~ 50 (52)
+++.++++++.+. +.+++.++||||||.++. .+++.+ |+++++++
T Consensus 246 ~~i~~al~~v~~~~g~~kv~lvG~cmGGtl~a~ala~~aa~~~~~rv~slv 296 (532)
T TIGR01838 246 DGVIAALEVVEAITGEKQVNCVGYCIGGTLLSTALAYLAARGDDKRIKSAT 296 (532)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEECcCcHHHHHHHHHHHHhCCCCccceEE
Confidence 4577788887765 568899999999999852 245555 66666654
No 88
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=98.39 E-value=1.2e-06 Score=48.31 Aligned_cols=40 Identities=13% Similarity=0.136 Sum_probs=30.8
Q ss_pred HHHHHHHhcC---CCcEEEEEEchHHHHHHHHHhhcCCceeEe
Q 038643 10 ASVDWLKANG---SKKVGMVGYCMGSALTIACSASLMERKHTF 49 (52)
Q Consensus 10 ~~~~~l~~~~---~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~ 49 (52)
+++.+++++. ..+..+.|+||||..|+.++.++|+....+
T Consensus 101 el~p~i~~~~~~~~~~~~i~G~S~GG~~Al~~~l~~Pd~F~~~ 143 (251)
T PF00756_consen 101 ELIPYIEANYRTDPDRRAIAGHSMGGYGALYLALRHPDLFGAV 143 (251)
T ss_dssp HHHHHHHHHSSEEECCEEEEEETHHHHHHHHHHHHSTTTESEE
T ss_pred cchhHHHHhcccccceeEEeccCCCcHHHHHHHHhCccccccc
Confidence 4455665552 233899999999999999999999976554
No 89
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=98.37 E-value=3.1e-06 Score=44.15 Aligned_cols=38 Identities=18% Similarity=0.134 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhc-CCCcEEEEEEchHHHHHHHHHhhcC
Q 038643 6 ADISASVDWLKAN-GSKKVGMVGYCMGSALTIACSASLM 43 (52)
Q Consensus 6 ~d~~~~~~~l~~~-~~~~i~l~G~S~GG~~a~~~a~~~p 43 (52)
..+...++..... +..++.++|||+||.+|..++...+
T Consensus 12 ~~i~~~~~~~~~~~p~~~i~v~GHSlGg~lA~l~a~~~~ 50 (153)
T cd00741 12 NLVLPLLKSALAQYPDYKIHVTGHSLGGALAGLAGLDLR 50 (153)
T ss_pred HHHHHHHHHHHHHCCCCeEEEEEcCHHHHHHHHHHHHHH
Confidence 3444444333322 5689999999999999999987754
No 90
>PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like.; PDB: 3LP5_A 3FLE_A 3DS8_A.
Probab=98.37 E-value=3.4e-06 Score=47.96 Aligned_cols=40 Identities=20% Similarity=0.175 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHHhc-CCCcEEEEEEchHHHHHHHHHhhc
Q 038643 3 GVVADISASVDWLKAN-GSKKVGMVGYCMGSALTIACSASL 42 (52)
Q Consensus 3 ~~~~d~~~~~~~l~~~-~~~~i~l~G~S~GG~~a~~~a~~~ 42 (52)
.+..-+..++.+|+++ ..+++-++||||||.....+...+
T Consensus 84 ~qa~wl~~vl~~L~~~Y~~~~~N~VGHSmGg~~~~~yl~~~ 124 (255)
T PF06028_consen 84 KQAKWLKKVLKYLKKKYHFKKFNLVGHSMGGLSWTYYLENY 124 (255)
T ss_dssp HHHHHHHHHHHHHHHCC--SEEEEEEETHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhcCCCEEeEEEECccHHHHHHHHHHh
Confidence 4567788899999888 479999999999999999988663
No 91
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=98.33 E-value=2.7e-06 Score=46.86 Aligned_cols=46 Identities=13% Similarity=0.135 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHh-cCCCcEEEEEEchHHHHHHHHHhhc-----CCceeEeee
Q 038643 6 ADISASVDWLKA-NGSKKVGMVGYCMGSALTIACSASL-----MERKHTFRM 51 (52)
Q Consensus 6 ~d~~~~~~~l~~-~~~~~i~l~G~S~GG~~a~~~a~~~-----p~~~~~~~~ 51 (52)
.++...++.+.+ .+..++.+.|||+||.+|..++... +..+.++.|
T Consensus 112 ~~~~~~~~~~~~~~p~~~i~vtGHSLGGaiA~l~a~~l~~~~~~~~i~~~tF 163 (229)
T cd00519 112 NQVLPELKSALKQYPDYKIIVTGHSLGGALASLLALDLRLRGPGSDVTVYTF 163 (229)
T ss_pred HHHHHHHHHHHhhCCCceEEEEccCHHHHHHHHHHHHHHhhCCCCceEEEEe
Confidence 344444433333 2467899999999999999888653 234555554
No 92
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=98.29 E-value=4.2e-06 Score=53.30 Aligned_cols=49 Identities=22% Similarity=0.337 Sum_probs=39.0
Q ss_pred hhHHHHHHHHHHHHHhc---------------C--CCcEEEEEEchHHHHHHHHHhhcCC-ceeEee
Q 038643 2 VGVVADISASVDWLKAN---------------G--SKKVGMVGYCMGSALTIACSASLME-RKHTFR 50 (52)
Q Consensus 2 ~~~~~d~~~~~~~l~~~---------------~--~~~i~l~G~S~GG~~a~~~a~~~p~-~~~~~~ 50 (52)
..+.+|..++++|+..+ + ..+|+++|.|+||.+++.+|+..|+ ..+.++
T Consensus 302 ~~E~~D~~~vIeWl~~~~~~~~d~~~~~~~kq~WsnGkVGm~G~SY~G~~~~~aAa~~pp~LkAIVp 368 (767)
T PRK05371 302 YQEIESMKAVIDWLNGRATAYTDRTRGKEVKADWSNGKVAMTGKSYLGTLPNAVATTGVEGLETIIP 368 (767)
T ss_pred HHHHHHHHHHHHHHhhCCccccccccccccccCCCCCeeEEEEEcHHHHHHHHHHhhCCCcceEEEe
Confidence 35678999999999843 1 5799999999999999999888665 444444
No 93
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=98.27 E-value=4.9e-06 Score=50.02 Aligned_cols=49 Identities=16% Similarity=0.201 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHHHhc-CCCcEEEEEEchHHHHHHHHHhhcC---CceeEeee
Q 038643 3 GVVADISASVDWLKAN-GSKKVGMVGYCMGSALTIACSASLM---ERKHTFRM 51 (52)
Q Consensus 3 ~~~~d~~~~~~~l~~~-~~~~i~l~G~S~GG~~a~~~a~~~p---~~~~~~~~ 51 (52)
+-.+|+++++++++++ |..++..+|+||||.+.+.+..+.. +..+++++
T Consensus 179 g~t~Dl~~~v~~i~~~~P~a~l~avG~S~Gg~iL~nYLGE~g~~~~l~~a~~v 231 (409)
T KOG1838|consen 179 GWTEDLREVVNHIKKRYPQAPLFAVGFSMGGNILTNYLGEEGDNTPLIAAVAV 231 (409)
T ss_pred CCHHHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHhhhccCCCCceeEEEE
Confidence 3468999999999998 4678999999999999998887643 35566554
No 94
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=98.27 E-value=5.6e-06 Score=47.01 Aligned_cols=42 Identities=12% Similarity=0.140 Sum_probs=31.7
Q ss_pred hhHHHHHHHHHHHHHhc---CCCcEEEEEEchHHHHHHHHHhhcC
Q 038643 2 VGVVADISASVDWLKAN---GSKKVGMVGYCMGSALTIACSASLM 43 (52)
Q Consensus 2 ~~~~~d~~~~~~~l~~~---~~~~i~l~G~S~GG~~a~~~a~~~p 43 (52)
+++++--..+++..... +..+++++|||.|+.+++.+..+.|
T Consensus 62 ~~QI~hk~~~i~~~~~~~~~~~~~liLiGHSIGayi~levl~r~~ 106 (266)
T PF10230_consen 62 QDQIEHKIDFIKELIPQKNKPNVKLILIGHSIGAYIALEVLKRLP 106 (266)
T ss_pred HHHHHHHHHHHHHHhhhhcCCCCcEEEEeCcHHHHHHHHHHHhcc
Confidence 44555555556554443 4578999999999999999998888
No 95
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=98.26 E-value=5.9e-06 Score=45.11 Aligned_cols=38 Identities=11% Similarity=0.139 Sum_probs=27.1
Q ss_pred HHHHhcCCCcEEEEEEchHHHHHHHHHhhcCCceeEeeeC
Q 038643 13 DWLKANGSKKVGMVGYCMGSALTIACSASLMERKHTFRMN 52 (52)
Q Consensus 13 ~~l~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~~~ 52 (52)
+.+++...+.+.++|.||||..|..++.+++-+ ++.||
T Consensus 51 ~~i~~~~~~~~~liGSSlGG~~A~~La~~~~~~--avLiN 88 (187)
T PF05728_consen 51 QLIEELKPENVVLIGSSLGGFYATYLAERYGLP--AVLIN 88 (187)
T ss_pred HHHHhCCCCCeEEEEEChHHHHHHHHHHHhCCC--EEEEc
Confidence 334443445699999999999999999887422 25555
No 96
>PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function.
Probab=98.25 E-value=7.5e-06 Score=45.78 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=29.8
Q ss_pred HHHHHHHhc---CCCcEEEEEEchHHHHHHHHHhhcC-----CceeEeeeC
Q 038643 10 ASVDWLKAN---GSKKVGMVGYCMGSALTIACSASLM-----ERKHTFRMN 52 (52)
Q Consensus 10 ~~~~~l~~~---~~~~i~l~G~S~GG~~a~~~a~~~p-----~~~~~~~~~ 52 (52)
.+++|+++. ...++.+.|||.||.+|.+.+...+ .+..+++||
T Consensus 70 ~A~~yl~~~~~~~~~~i~v~GHSkGGnLA~yaa~~~~~~~~~rI~~vy~fD 120 (224)
T PF11187_consen 70 SALAYLKKIAKKYPGKIYVTGHSKGGNLAQYAAANCDDEIQDRISKVYSFD 120 (224)
T ss_pred HHHHHHHHHHHhCCCCEEEEEechhhHHHHHHHHHccHHHhhheeEEEEee
Confidence 445555543 2466999999999999999997732 244555554
No 97
>PRK10115 protease 2; Provisional
Probab=98.23 E-value=4.9e-06 Score=52.37 Aligned_cols=48 Identities=19% Similarity=0.027 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHHHhcC---CCcEEEEEEchHHHHHHHHHhhcCCceeEee
Q 038643 3 GVVADISASVDWLKANG---SKKVGMVGYCMGSALTIACSASLMERKHTFR 50 (52)
Q Consensus 3 ~~~~d~~~~~~~l~~~~---~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~ 50 (52)
...+|+.++++||.+++ ++++++.|.|.||.++...+.++|+..++++
T Consensus 503 ~~~~D~~a~~~~Lv~~g~~d~~rl~i~G~S~GG~l~~~~~~~~Pdlf~A~v 553 (686)
T PRK10115 503 NTFNDYLDACDALLKLGYGSPSLCYGMGGSAGGMLMGVAINQRPELFHGVI 553 (686)
T ss_pred CcHHHHHHHHHHHHHcCCCChHHeEEEEECHHHHHHHHHHhcChhheeEEE
Confidence 35789999999999885 6899999999999999999988999766654
No 98
>PRK10162 acetyl esterase; Provisional
Probab=98.23 E-value=4.3e-06 Score=48.21 Aligned_cols=39 Identities=18% Similarity=0.375 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHHhc------CCCcEEEEEEchHHHHHHHHHhh
Q 038643 3 GVVADISASVDWLKAN------GSKKVGMVGYCMGSALTIACSAS 41 (52)
Q Consensus 3 ~~~~d~~~~~~~l~~~------~~~~i~l~G~S~GG~~a~~~a~~ 41 (52)
...+|+.++++|+.++ ..++|++.|+|+||.+++.++..
T Consensus 130 ~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SaGG~la~~~a~~ 174 (318)
T PRK10162 130 QAIEEIVAVCCYFHQHAEDYGINMSRIGFAGDSAGAMLALASALW 174 (318)
T ss_pred CcHHHHHHHHHHHHHhHHHhCCChhHEEEEEECHHHHHHHHHHHH
Confidence 3578999999998764 24789999999999999998864
No 99
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=98.20 E-value=4.6e-06 Score=44.85 Aligned_cols=40 Identities=20% Similarity=0.432 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHHHHHhc-----C-CCcEEEEEEchHHHHHHHHHhh
Q 038643 2 VGVVADISASVDWLKAN-----G-SKKVGMVGYCMGSALTIACSAS 41 (52)
Q Consensus 2 ~~~~~d~~~~~~~l~~~-----~-~~~i~l~G~S~GG~~a~~~a~~ 41 (52)
+..++|+.++++|+.++ . .++|+++|+|-||.+++.++.+
T Consensus 46 p~~~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SAGg~la~~~~~~ 91 (211)
T PF07859_consen 46 PAALEDVKAAYRWLLKNADKLGIDPERIVLIGDSAGGHLALSLALR 91 (211)
T ss_dssp THHHHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHH
T ss_pred cccccccccceeeeccccccccccccceEEeecccccchhhhhhhh
Confidence 46789999999999887 1 6799999999999999999865
No 100
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=98.19 E-value=6.1e-06 Score=44.81 Aligned_cols=32 Identities=16% Similarity=0.303 Sum_probs=23.9
Q ss_pred HHHHHHhc-CCCcEEEEEEchHHHHHHHHHhhc
Q 038643 11 SVDWLKAN-GSKKVGMVGYCMGSALTIACSASL 42 (52)
Q Consensus 11 ~~~~l~~~-~~~~i~l~G~S~GG~~a~~~a~~~ 42 (52)
.++.++.. +..++.++|||+||.+|..+|.+.
T Consensus 55 y~~~I~~~~~~gp~~L~G~S~Gg~lA~E~A~~L 87 (229)
T PF00975_consen 55 YAEAIRARQPEGPYVLAGWSFGGILAFEMARQL 87 (229)
T ss_dssp HHHHHHHHTSSSSEEEEEETHHHHHHHHHHHHH
T ss_pred HHHHhhhhCCCCCeeehccCccHHHHHHHHHHH
Confidence 33444444 344999999999999999999653
No 101
>KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=98.18 E-value=4.2e-06 Score=48.93 Aligned_cols=48 Identities=15% Similarity=0.195 Sum_probs=35.3
Q ss_pred hhHHHHHHHHHHHHHhc-CCCcEEEEEEchHH-HHHHHHHhhcCCceeEe
Q 038643 2 VGVVADISASVDWLKAN-GSKKVGMVGYCMGS-ALTIACSASLMERKHTF 49 (52)
Q Consensus 2 ~~~~~d~~~~~~~l~~~-~~~~i~l~G~S~GG-~~a~~~a~~~p~~~~~~ 49 (52)
+...+|+..+++..... ...++.++|||||| .+++..+...|+.+..+
T Consensus 103 ~~ma~dv~~Fi~~v~~~~~~~~~~l~GHsmGG~~~~m~~t~~~p~~~~rl 152 (315)
T KOG2382|consen 103 EAMAEDVKLFIDGVGGSTRLDPVVLLGHSMGGVKVAMAETLKKPDLIERL 152 (315)
T ss_pred HHHHHHHHHHHHHcccccccCCceecccCcchHHHHHHHHHhcCccccee
Confidence 34567777777776532 25788999999999 77788888888765443
No 102
>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]
Probab=98.17 E-value=2.9e-07 Score=52.19 Aligned_cols=49 Identities=22% Similarity=0.342 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHHHHHhcC---CCcEEEEEEchHHHHHHHHHhhcCCceeEee
Q 038643 2 VGVVADISASVDWLKANG---SKKVGMVGYCMGSALTIACSASLMERKHTFR 50 (52)
Q Consensus 2 ~~~~~d~~~~~~~l~~~~---~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~ 50 (52)
++..-|.++++||+-.++ ..|+++.|.|+||+++..+|++..+++.++.
T Consensus 127 ~GL~lDs~avldyl~t~~~~dktkivlfGrSlGGAvai~lask~~~ri~~~i 178 (300)
T KOG4391|consen 127 EGLKLDSEAVLDYLMTRPDLDKTKIVLFGRSLGGAVAIHLASKNSDRISAII 178 (300)
T ss_pred cceeccHHHHHHHHhcCccCCcceEEEEecccCCeeEEEeeccchhheeeee
Confidence 345678999999999885 5789999999999999999999888776654
No 103
>KOG3724 consensus Negative regulator of COPII vesicle formation [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.16 E-value=4e-06 Score=53.89 Aligned_cols=40 Identities=18% Similarity=0.293 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHHHHHhc--C--------CCcEEEEEEchHHHHHHHHHhh
Q 038643 2 VGVVADISASVDWLKAN--G--------SKKVGMVGYCMGSALTIACSAS 41 (52)
Q Consensus 2 ~~~~~d~~~~~~~l~~~--~--------~~~i~l~G~S~GG~~a~~~a~~ 41 (52)
+++.+.+..+++++.+. + +..|.++||||||.+|...+..
T Consensus 153 ~dQtEYV~dAIk~ILslYr~~~e~~~p~P~sVILVGHSMGGiVAra~~tl 202 (973)
T KOG3724|consen 153 LDQTEYVNDAIKYILSLYRGEREYASPLPHSVILVGHSMGGIVARATLTL 202 (973)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCCCCCceEEEEeccchhHHHHHHHhh
Confidence 56778888888887765 1 3459999999999999887743
No 104
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=98.16 E-value=2.6e-06 Score=50.59 Aligned_cols=44 Identities=23% Similarity=0.317 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHh-cCCCcEE-EEEEchHHHHHHHHHhhcCCceeE
Q 038643 5 VADISASVDWLKA-NGSKKVG-MVGYCMGSALTIACSASLMERKHT 48 (52)
Q Consensus 5 ~~d~~~~~~~l~~-~~~~~i~-l~G~S~GG~~a~~~a~~~p~~~~~ 48 (52)
++|.-.+-+.+.+ .+.+++. ++|-||||+.++.++..+|+++..
T Consensus 129 i~D~V~aq~~ll~~LGI~~l~avvGgSmGGMqaleWa~~yPd~V~~ 174 (368)
T COG2021 129 IRDMVRAQRLLLDALGIKKLAAVVGGSMGGMQALEWAIRYPDRVRR 174 (368)
T ss_pred HHHHHHHHHHHHHhcCcceEeeeeccChHHHHHHHHHHhChHHHhh
Confidence 3455555555433 4667775 999999999999999999987543
No 105
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=98.15 E-value=9.5e-06 Score=48.62 Aligned_cols=30 Identities=13% Similarity=0.165 Sum_probs=26.5
Q ss_pred CCcEEEEEEchHHHHHHHHHhhcCCceeEe
Q 038643 20 SKKVGMVGYCMGSALTIACSASLMERKHTF 49 (52)
Q Consensus 20 ~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~ 49 (52)
.++.++.|+||||..++.++.++|+..+.+
T Consensus 287 ~~~~~IaG~S~GGl~AL~~al~~Pd~Fg~v 316 (411)
T PRK10439 287 ADRTVVAGQSFGGLAALYAGLHWPERFGCV 316 (411)
T ss_pred ccceEEEEEChHHHHHHHHHHhCcccccEE
Confidence 467899999999999999999999976654
No 106
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=98.12 E-value=1.6e-05 Score=46.30 Aligned_cols=41 Identities=22% Similarity=0.349 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHHHHHhc-----CCCcEEEEEEchHHHHHHHHHhhc
Q 038643 2 VGVVADISASVDWLKAN-----GSKKVGMVGYCMGSALTIACSASL 42 (52)
Q Consensus 2 ~~~~~d~~~~~~~l~~~-----~~~~i~l~G~S~GG~~a~~~a~~~ 42 (52)
+..++|+..+++|++.. ..++|+++|||-|.--++.+....
T Consensus 84 ~~D~~eI~~~v~ylr~~~~g~~~~~kIVLmGHSTGcQdvl~Yl~~~ 129 (303)
T PF08538_consen 84 DRDVEEIAQLVEYLRSEKGGHFGREKIVLMGHSTGCQDVLHYLSSP 129 (303)
T ss_dssp HHHHHHHHHHHHHHHHHS------S-EEEEEECCHHHHHHHHHHH-
T ss_pred hhHHHHHHHHHHHHHHhhccccCCccEEEEecCCCcHHHHHHHhcc
Confidence 56789999999999998 368999999999999999998764
No 107
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.11 E-value=4.8e-06 Score=47.23 Aligned_cols=41 Identities=22% Similarity=0.307 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHHHHHhc-----CCCcEEEEEEchHHHHHHHHHhhc
Q 038643 2 VGVVADISASVDWLKAN-----GSKKVGMVGYCMGSALTIACSASL 42 (52)
Q Consensus 2 ~~~~~d~~~~~~~l~~~-----~~~~i~l~G~S~GG~~a~~~a~~~ 42 (52)
|....|++..+|.+... ...+..++||||||++|..+|.+.
T Consensus 50 ep~~~di~~Lad~la~el~~~~~d~P~alfGHSmGa~lAfEvArrl 95 (244)
T COG3208 50 EPLLTDIESLADELANELLPPLLDAPFALFGHSMGAMLAFEVARRL 95 (244)
T ss_pred CcccccHHHHHHHHHHHhccccCCCCeeecccchhHHHHHHHHHHH
Confidence 34567777777776654 135799999999999999999664
No 108
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=98.06 E-value=1.9e-05 Score=46.60 Aligned_cols=39 Identities=31% Similarity=0.511 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHHhc-CCCcEEEEEEchHH-HHHHHHHhh
Q 038643 3 GVVADISASVDWLKAN-GSKKVGMVGYCMGS-ALTIACSAS 41 (52)
Q Consensus 3 ~~~~d~~~~~~~l~~~-~~~~i~l~G~S~GG-~~a~~~a~~ 41 (52)
+..+|+..++++++.+ ++.++..+|+|+|| +++..++.+
T Consensus 129 G~t~D~~~~l~~l~~~~~~r~~~avG~SLGgnmLa~ylgee 169 (345)
T COG0429 129 GETEDIRFFLDWLKARFPPRPLYAVGFSLGGNMLANYLGEE 169 (345)
T ss_pred cchhHHHHHHHHHHHhCCCCceEEEEecccHHHHHHHHHhh
Confidence 4568999999999987 47899999999999 777777654
No 109
>PRK05855 short chain dehydrogenase; Validated
Probab=98.02 E-value=9.5e-06 Score=48.80 Aligned_cols=37 Identities=16% Similarity=0.182 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHHhcCCCcEEEEEEchHHHHHHHHHhh
Q 038643 3 GVVADISASVDWLKANGSKKVGMVGYCMGSALTIACSAS 41 (52)
Q Consensus 3 ~~~~d~~~~~~~l~~~~~~~i~l~G~S~GG~~a~~~a~~ 41 (52)
...+|+..+++.+. ...++.++||||||.+++.++..
T Consensus 78 ~~a~dl~~~i~~l~--~~~~~~lvGhS~Gg~~a~~~a~~ 114 (582)
T PRK05855 78 RLADDFAAVIDAVS--PDRPVHLLAHDWGSIQGWEAVTR 114 (582)
T ss_pred HHHHHHHHHHHHhC--CCCcEEEEecChHHHHHHHHHhC
Confidence 45567777776543 13459999999999999888755
No 110
>PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids []. This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A ....
Probab=98.01 E-value=2.1e-05 Score=43.94 Aligned_cols=36 Identities=28% Similarity=0.367 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHhc-CCCcEEEEEEchHHHHHHHHHh
Q 038643 4 VVADISASVDWLKAN-GSKKVGMVGYCMGSALTIACSA 40 (52)
Q Consensus 4 ~~~d~~~~~~~l~~~-~~~~i~l~G~S~GG~~a~~~a~ 40 (52)
...+++.+++-+++. +. ||.++||||||.++..+..
T Consensus 58 ~~~~l~~fI~~Vl~~TGa-kVDIVgHS~G~~iaR~yi~ 94 (219)
T PF01674_consen 58 SAKQLRAFIDAVLAYTGA-KVDIVGHSMGGTIARYYIK 94 (219)
T ss_dssp HHHHHHHHHHHHHHHHT---EEEEEETCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhCC-EEEEEEcCCcCHHHHHHHH
Confidence 346778888777665 56 9999999999999988874
No 111
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=98.00 E-value=1.8e-05 Score=47.05 Aligned_cols=40 Identities=13% Similarity=0.109 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEchHHHHHHHHHhhcC
Q 038643 4 VVADISASVDWLKANGSKKVGMVGYCMGSALTIACSASLM 43 (52)
Q Consensus 4 ~~~d~~~~~~~l~~~~~~~i~l~G~S~GG~~a~~~a~~~p 43 (52)
....+...++.+.+...+|+.++||||||.++..+....+
T Consensus 102 ~~~~lk~~ie~~~~~~~~kv~li~HSmGgl~~~~fl~~~~ 141 (389)
T PF02450_consen 102 YFTKLKQLIEEAYKKNGKKVVLIAHSMGGLVARYFLQWMP 141 (389)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEeCCCchHHHHHHHhcc
Confidence 4455666666655544689999999999999999887664
No 112
>PRK04940 hypothetical protein; Provisional
Probab=97.98 E-value=5.3e-05 Score=41.40 Aligned_cols=30 Identities=10% Similarity=-0.004 Sum_probs=24.7
Q ss_pred CcEEEEEEchHHHHHHHHHhhcCCceeEeeeC
Q 038643 21 KKVGMVGYCMGSALTIACSASLMERKHTFRMN 52 (52)
Q Consensus 21 ~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~~~ 52 (52)
+++.++|.|+||+.|..++.++. ..+|.+|
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g--~~aVLiN 89 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCG--IRQVIFN 89 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHC--CCEEEEC
Confidence 57899999999999999998873 4556555
No 113
>KOG2984 consensus Predicted hydrolase [General function prediction only]
Probab=97.96 E-value=1.3e-06 Score=49.15 Aligned_cols=47 Identities=17% Similarity=0.225 Sum_probs=41.0
Q ss_pred hHHHHHHHHHHHHHhcCCCcEEEEEEchHHHHHHHHHhhcCCceeEe
Q 038643 3 GVVADISASVDWLKANGSKKVGMVGYCMGSALTIACSASLMERKHTF 49 (52)
Q Consensus 3 ~~~~d~~~~~~~l~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~ 49 (52)
-..+|.+.+++.++....+++.++|||=||.+++..|+++|+.+..+
T Consensus 96 ff~~Da~~avdLM~aLk~~~fsvlGWSdGgiTalivAak~~e~v~rm 142 (277)
T KOG2984|consen 96 FFMKDAEYAVDLMEALKLEPFSVLGWSDGGITALIVAAKGKEKVNRM 142 (277)
T ss_pred HHHHhHHHHHHHHHHhCCCCeeEeeecCCCeEEEEeeccChhhhhhh
Confidence 34679999999999988899999999999999999999998866543
No 114
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=97.94 E-value=1.7e-05 Score=47.17 Aligned_cols=31 Identities=16% Similarity=0.284 Sum_probs=24.1
Q ss_pred CcEEEEEEchHHHHHHHHHhhcCCceeEeee
Q 038643 21 KKVGMVGYCMGSALTIACSASLMERKHTFRM 51 (52)
Q Consensus 21 ~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~~ 51 (52)
.+|+++|||+||..+...+...++..+++.+
T Consensus 228 ~~i~~~GHSFGGATa~~~l~~d~r~~~~I~L 258 (379)
T PF03403_consen 228 SRIGLAGHSFGGATALQALRQDTRFKAGILL 258 (379)
T ss_dssp EEEEEEEETHHHHHHHHHHHH-TT--EEEEE
T ss_pred hheeeeecCchHHHHHHHHhhccCcceEEEe
Confidence 5799999999999999999888777777654
No 115
>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins.
Probab=97.92 E-value=3.1e-05 Score=46.00 Aligned_cols=40 Identities=20% Similarity=0.359 Sum_probs=32.8
Q ss_pred hhHHHHHHHHHHHHHhcC----CCcEEEEEEchHHHHHHHHHhh
Q 038643 2 VGVVADISASVDWLKANG----SKKVGMVGYCMGSALTIACSAS 41 (52)
Q Consensus 2 ~~~~~d~~~~~~~l~~~~----~~~i~l~G~S~GG~~a~~~a~~ 41 (52)
+..+.|.+++++||++++ +++|.+.|||+||.++......
T Consensus 192 ~dLv~~~~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~Vqa~AL~~ 235 (365)
T PF05677_consen 192 KDLVKDYQACVRYLRDEEQGPKAKNIILYGHSLGGGVQAEALKK 235 (365)
T ss_pred HHHHHHHHHHHHHHHhcccCCChheEEEeeccccHHHHHHHHHh
Confidence 456789999999998742 5889999999999998875544
No 116
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=97.89 E-value=2.8e-05 Score=47.16 Aligned_cols=45 Identities=24% Similarity=0.514 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhcC-CCcEEEEEEchHHHHHHHHHhhcCCc-eeEee
Q 038643 6 ADISASVDWLKANG-SKKVGMVGYCMGSALTIACSASLMER-KHTFR 50 (52)
Q Consensus 6 ~d~~~~~~~l~~~~-~~~i~l~G~S~GG~~a~~~a~~~p~~-~~~~~ 50 (52)
+++..+++.+++.. .++|.++|||.||++...+++.+|.+ ++.+.
T Consensus 165 e~l~~aid~v~~itg~~~InliGyCvGGtl~~~ala~~~~k~I~S~T 211 (445)
T COG3243 165 EGLSEAIDTVKDITGQKDINLIGYCVGGTLLAAALALMAAKRIKSLT 211 (445)
T ss_pred HHHHHHHHHHHHHhCccccceeeEecchHHHHHHHHhhhhcccccce
Confidence 66777888887773 58999999999999999999888866 65544
No 117
>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.86 E-value=6.5e-05 Score=43.89 Aligned_cols=47 Identities=15% Similarity=0.056 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHhcC---CCcEEEEEEchHHHHHHHHHhhcCCceeEee
Q 038643 4 VVADISASVDWLKANG---SKKVGMVGYCMGSALTIACSASLMERKHTFR 50 (52)
Q Consensus 4 ~~~d~~~~~~~l~~~~---~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~ 50 (52)
.+.++.+++..+..+. +.+|++.|+|-||.++..+++.+|++.+++.
T Consensus 124 dVgflr~lva~l~~~~gidp~RVyvtGlS~GG~Ma~~lac~~p~~faa~A 173 (312)
T COG3509 124 DVGFLRALVAKLVNEYGIDPARVYVTGLSNGGRMANRLACEYPDIFAAIA 173 (312)
T ss_pred HHHHHHHHHHHHHHhcCcCcceEEEEeeCcHHHHHHHHHhcCccccccee
Confidence 4566777777776662 6799999999999999999999999877654
No 118
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=97.86 E-value=0.00011 Score=43.80 Aligned_cols=47 Identities=15% Similarity=0.091 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHHHHHhc----CCCcEEEEEEchHHHHHHHHHhhcCCceeE
Q 038643 2 VGVVADISASVDWLKAN----GSKKVGMVGYCMGSALTIACSASLMERKHT 48 (52)
Q Consensus 2 ~~~~~d~~~~~~~l~~~----~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~ 48 (52)
|+.++|+..++++++.+ +..|++++|-|.||+++..+-.++|+.+.+
T Consensus 90 ~QALaD~a~F~~~~~~~~~~~~~~pwI~~GgSY~G~Laaw~r~kyP~~~~g 140 (434)
T PF05577_consen 90 EQALADLAYFIRYVKKKYNTAPNSPWIVFGGSYGGALAAWFRLKYPHLFDG 140 (434)
T ss_dssp HHHHHHHHHHHHHHHHHTTTGCC--EEEEEETHHHHHHHHHHHH-TTT-SE
T ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCEEEECCcchhHHHHHHHhhCCCeeEE
Confidence 67899999999999864 246899999999999999999999997544
No 119
>PLN02454 triacylglycerol lipase
Probab=97.82 E-value=7.1e-05 Score=45.26 Aligned_cols=38 Identities=13% Similarity=0.237 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhc-CCC--cEEEEEEchHHHHHHHHHhh
Q 038643 4 VVADISASVDWLKAN-GSK--KVGMVGYCMGSALTIACSAS 41 (52)
Q Consensus 4 ~~~d~~~~~~~l~~~-~~~--~i~l~G~S~GG~~a~~~a~~ 41 (52)
..+++...++.+.+. +.. +|.+.|||+||.+|...|..
T Consensus 208 ~r~qvl~~V~~l~~~Yp~~~~sI~vTGHSLGGALAtLaA~d 248 (414)
T PLN02454 208 ARSQLLAKIKELLERYKDEKLSIVLTGHSLGASLATLAAFD 248 (414)
T ss_pred HHHHHHHHHHHHHHhCCCCCceEEEEecCHHHHHHHHHHHH
Confidence 344555555555444 333 49999999999999998853
No 120
>PLN02310 triacylglycerol lipase
Probab=97.81 E-value=5e-05 Score=45.80 Aligned_cols=21 Identities=19% Similarity=0.333 Sum_probs=18.3
Q ss_pred CCcEEEEEEchHHHHHHHHHh
Q 038643 20 SKKVGMVGYCMGSALTIACSA 40 (52)
Q Consensus 20 ~~~i~l~G~S~GG~~a~~~a~ 40 (52)
..+|.+.|||+||.+|...|.
T Consensus 208 ~~sI~vTGHSLGGALAtLaA~ 228 (405)
T PLN02310 208 EVSLTVTGHSLGGALALLNAY 228 (405)
T ss_pred cceEEEEcccHHHHHHHHHHH
Confidence 357999999999999988874
No 121
>PLN03037 lipase class 3 family protein; Provisional
Probab=97.80 E-value=4.7e-05 Score=47.09 Aligned_cols=36 Identities=19% Similarity=0.442 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhcC-CCcEEEEEEchHHHHHHHHHh
Q 038643 5 VADISASVDWLKANG-SKKVGMVGYCMGSALTIACSA 40 (52)
Q Consensus 5 ~~d~~~~~~~l~~~~-~~~i~l~G~S~GG~~a~~~a~ 40 (52)
.+++...++..++.+ ..+|.+.|||+||.+|...|.
T Consensus 301 l~eV~rLv~~Yk~~ge~~SItVTGHSLGGALAtLaA~ 337 (525)
T PLN03037 301 MEEVKRLVNFFKDRGEEVSLTITGHSLGGALALLNAY 337 (525)
T ss_pred HHHHHHHHHhccccCCcceEEEeccCHHHHHHHHHHH
Confidence 344555554443322 357999999999999998884
No 122
>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=3.5e-05 Score=49.08 Aligned_cols=44 Identities=20% Similarity=0.280 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHhcC----CCcEEEEEEchHHHHHHHHHhhcCCceeE
Q 038643 5 VADISASVDWLKANG----SKKVGMVGYCMGSALTIACSASLMERKHT 48 (52)
Q Consensus 5 ~~d~~~~~~~l~~~~----~~~i~l~G~S~GG~~a~~~a~~~p~~~~~ 48 (52)
++|=.+.+++|.++. .++|++-|||.||.+++....++|++.++
T Consensus 707 ~eDQVeglq~Laeq~gfidmdrV~vhGWSYGGYLSlm~L~~~P~Ifrv 754 (867)
T KOG2281|consen 707 VEDQVEGLQMLAEQTGFIDMDRVGVHGWSYGGYLSLMGLAQYPNIFRV 754 (867)
T ss_pred ehhhHHHHHHHHHhcCcccchheeEeccccccHHHHHHhhcCcceeeE
Confidence 456667778887773 68999999999999999999999997544
No 123
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=97.78 E-value=0.00011 Score=40.95 Aligned_cols=39 Identities=21% Similarity=0.241 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHHHhc-C-CCcEEEEEEchHHHHHHHHHhh
Q 038643 3 GVVADISASVDWLKAN-G-SKKVGMVGYCMGSALTIACSAS 41 (52)
Q Consensus 3 ~~~~d~~~~~~~l~~~-~-~~~i~l~G~S~GG~~a~~~a~~ 41 (52)
-...|+..+.++-.++ . ..+++|.|||.|+.+...+..+
T Consensus 75 ~ay~DV~~AF~~yL~~~n~GRPfILaGHSQGs~~l~~LL~e 115 (207)
T PF11288_consen 75 LAYSDVRAAFDYYLANYNNGRPFILAGHSQGSMHLLRLLKE 115 (207)
T ss_pred hhHHHHHHHHHHHHHhcCCCCCEEEEEeChHHHHHHHHHHH
Confidence 4578999999764444 3 5789999999999999998755
No 124
>COG0400 Predicted esterase [General function prediction only]
Probab=97.77 E-value=9.2e-05 Score=41.11 Aligned_cols=29 Identities=14% Similarity=0.319 Sum_probs=25.4
Q ss_pred CCcEEEEEEchHHHHHHHHHhhcCCceeE
Q 038643 20 SKKVGMVGYCMGSALTIACSASLMERKHT 48 (52)
Q Consensus 20 ~~~i~l~G~S~GG~~a~~~a~~~p~~~~~ 48 (52)
.++++++|||.|+.+++.+..++|+..++
T Consensus 98 ~~~ii~~GfSqGA~ial~~~l~~~~~~~~ 126 (207)
T COG0400 98 SSRIILIGFSQGANIALSLGLTLPGLFAG 126 (207)
T ss_pred hhheEEEecChHHHHHHHHHHhCchhhcc
Confidence 58999999999999999999999875443
No 125
>PLN02162 triacylglycerol lipase
Probab=97.76 E-value=9.6e-05 Score=45.31 Aligned_cols=33 Identities=27% Similarity=0.268 Sum_probs=23.6
Q ss_pred HHHHHH-HHHhcCCCcEEEEEEchHHHHHHHHHh
Q 038643 8 ISASVD-WLKANGSKKVGMVGYCMGSALTIACSA 40 (52)
Q Consensus 8 ~~~~~~-~l~~~~~~~i~l~G~S~GG~~a~~~a~ 40 (52)
+...++ .+.+.+..++.+.|||+||++|..+++
T Consensus 264 I~~~L~~lL~k~p~~kliVTGHSLGGALAtLaAa 297 (475)
T PLN02162 264 IRQMLRDKLARNKNLKYILTGHSLGGALAALFPA 297 (475)
T ss_pred HHHHHHHHHHhCCCceEEEEecChHHHHHHHHHH
Confidence 444443 333345678999999999999998765
No 126
>COG2936 Predicted acyl esterases [General function prediction only]
Probab=97.76 E-value=5.2e-05 Score=47.26 Aligned_cols=45 Identities=20% Similarity=0.273 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHhcC--CCcEEEEEEchHHHHHHHHHhhcCCceeE
Q 038643 4 VVADISASVDWLKANG--SKKVGMVGYCMGSALTIACSASLMERKHT 48 (52)
Q Consensus 4 ~~~d~~~~~~~l~~~~--~~~i~l~G~S~GG~~a~~~a~~~p~~~~~ 48 (52)
+.+|-.+.++|+.+++ ..+|+++|.|++|+..+.+|+..|.-.++
T Consensus 105 E~~Dg~D~I~Wia~QpWsNG~Vgm~G~SY~g~tq~~~Aa~~pPaLka 151 (563)
T COG2936 105 EAEDGYDTIEWLAKQPWSNGNVGMLGLSYLGFTQLAAAALQPPALKA 151 (563)
T ss_pred cccchhHHHHHHHhCCccCCeeeeecccHHHHHHHHHHhcCCchhee
Confidence 6789999999999996 78999999999999999999887654443
No 127
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.75 E-value=1.7e-05 Score=46.12 Aligned_cols=47 Identities=23% Similarity=0.297 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHhcC---CCcEEEEEEchHHHHHHHHHhhcCCceeEee
Q 038643 4 VVADISASVDWLKANG---SKKVGMVGYCMGSALTIACSASLMERKHTFR 50 (52)
Q Consensus 4 ~~~d~~~~~~~l~~~~---~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~ 50 (52)
...|+-.+++.+.+.+ .++|++.|.|.||.+++..++..|.++++++
T Consensus 156 v~~D~~~ave~~~sl~~vde~Ri~v~G~SqGGglalaaaal~~rik~~~~ 205 (321)
T COG3458 156 VFLDAVRAVEILASLDEVDEERIGVTGGSQGGGLALAAAALDPRIKAVVA 205 (321)
T ss_pred ehHHHHHHHHHHhccCccchhheEEeccccCchhhhhhhhcChhhhcccc
Confidence 4567788888887764 6899999999999999999999888776654
No 128
>COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.75 E-value=6.8e-05 Score=42.83 Aligned_cols=31 Identities=19% Similarity=0.360 Sum_probs=24.3
Q ss_pred HHHHHhc-CCCcEEEEEEchHHHHHHHHHhhc
Q 038643 12 VDWLKAN-GSKKVGMVGYCMGSALTIACSASL 42 (52)
Q Consensus 12 ~~~l~~~-~~~~i~l~G~S~GG~~a~~~a~~~ 42 (52)
++.+++. +..++.+.|||+||.++...|.+.
T Consensus 55 v~~Ir~~QP~GPy~L~G~S~GG~vA~evA~qL 86 (257)
T COG3319 55 VAAIRRVQPEGPYVLLGWSLGGAVAFEVAAQL 86 (257)
T ss_pred HHHHHHhCCCCCEEEEeeccccHHHHHHHHHH
Confidence 3444443 578999999999999999999763
No 129
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=97.73 E-value=0.00017 Score=40.42 Aligned_cols=37 Identities=14% Similarity=0.216 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhc-CCCcEEEEEEchHHHHHHHHHhh
Q 038643 5 VADISASVDWLKAN-GSKKVGMVGYCMGSALTIACSAS 41 (52)
Q Consensus 5 ~~d~~~~~~~l~~~-~~~~i~l~G~S~GG~~a~~~a~~ 41 (52)
..++..+++.|.+. +..+|.+++||||+.+.+.....
T Consensus 76 ~~~l~~~L~~L~~~~~~~~I~ilaHSMG~rv~~~aL~~ 113 (233)
T PF05990_consen 76 GPALARFLRDLARAPGIKRIHILAHSMGNRVLLEALRQ 113 (233)
T ss_pred HHHHHHHHHHHHhccCCceEEEEEeCchHHHHHHHHHH
Confidence 45566666666666 57899999999999998876543
No 130
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=97.72 E-value=8.1e-05 Score=42.53 Aligned_cols=40 Identities=25% Similarity=0.502 Sum_probs=34.7
Q ss_pred hHHHHHHHHHHHHHhcC------CCcEEEEEEchHHHHHHHHHhhc
Q 038643 3 GVVADISASVDWLKANG------SKKVGMVGYCMGSALTIACSASL 42 (52)
Q Consensus 3 ~~~~d~~~~~~~l~~~~------~~~i~l~G~S~GG~~a~~~a~~~ 42 (52)
..++|+.++++|+.++. +++|.+.|+|-||.+++.++...
T Consensus 128 ~~~~d~~~a~~~l~~~~~~~g~dp~~i~v~GdSAGG~La~~~a~~~ 173 (312)
T COG0657 128 AALEDAYAAYRWLRANAAELGIDPSRIAVAGDSAGGHLALALALAA 173 (312)
T ss_pred chHHHHHHHHHHHHhhhHhhCCCccceEEEecCcccHHHHHHHHHH
Confidence 46789999999999762 68999999999999999998653
No 131
>KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=97.72 E-value=7.4e-05 Score=45.52 Aligned_cols=46 Identities=17% Similarity=0.101 Sum_probs=40.9
Q ss_pred hhHHHHHHHHHHHHHhcC---CCcEEEEEEchHHHHHHHHHhhcCCcee
Q 038643 2 VGVVADISASVDWLKANG---SKKVGMVGYCMGSALTIACSASLMERKH 47 (52)
Q Consensus 2 ~~~~~d~~~~~~~l~~~~---~~~i~l~G~S~GG~~a~~~a~~~p~~~~ 47 (52)
|+.+.|....+.++++.. ..+|+.+|-|.||+++..+=.++|.++.
T Consensus 145 eQALADfA~ll~~lK~~~~a~~~pvIafGGSYGGMLaAWfRlKYPHiv~ 193 (492)
T KOG2183|consen 145 EQALADFAELLTFLKRDLSAEASPVIAFGGSYGGMLAAWFRLKYPHIVL 193 (492)
T ss_pred HHHHHHHHHHHHHHhhccccccCcEEEecCchhhHHHHHHHhcChhhhh
Confidence 678999999999998872 5789999999999999999999998754
No 132
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=97.71 E-value=9.8e-05 Score=47.24 Aligned_cols=42 Identities=21% Similarity=0.138 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHHHhcC---CCcEEEEEEchHHHHHHHHHhhcCC
Q 038643 3 GVVADISASVDWLKANG---SKKVGMVGYCMGSALTIACSASLME 44 (52)
Q Consensus 3 ~~~~d~~~~~~~l~~~~---~~~i~l~G~S~GG~~a~~~a~~~p~ 44 (52)
..++|...+++++.+.+ .+||.++|||.||.+++.+...+|+
T Consensus 587 ~ev~D~~~~~~~~~~~~~iD~~ri~i~GwSyGGy~t~~~l~~~~~ 631 (755)
T KOG2100|consen 587 VEVKDQIEAVKKVLKLPFIDRSRVAIWGWSYGGYLTLKLLESDPG 631 (755)
T ss_pred cchHHHHHHHHHHHhcccccHHHeEEeccChHHHHHHHHhhhCcC
Confidence 35788889998888875 6899999999999999999999874
No 133
>PLN00413 triacylglycerol lipase
Probab=97.71 E-value=0.0001 Score=45.21 Aligned_cols=33 Identities=27% Similarity=0.360 Sum_probs=23.9
Q ss_pred HHHHHH-HHHhcCCCcEEEEEEchHHHHHHHHHh
Q 038643 8 ISASVD-WLKANGSKKVGMVGYCMGSALTIACSA 40 (52)
Q Consensus 8 ~~~~~~-~l~~~~~~~i~l~G~S~GG~~a~~~a~ 40 (52)
+...++ .+++.+..++.+.|||+||++|..++.
T Consensus 270 i~~~Lk~ll~~~p~~kliVTGHSLGGALAtLaA~ 303 (479)
T PLN00413 270 ILRHLKEIFDQNPTSKFILSGHSLGGALAILFTA 303 (479)
T ss_pred HHHHHHHHHHHCCCCeEEEEecCHHHHHHHHHHH
Confidence 334443 333345678999999999999998874
No 134
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=97.70 E-value=0.00011 Score=40.62 Aligned_cols=43 Identities=23% Similarity=0.379 Sum_probs=34.0
Q ss_pred hhHHHHHHHHHHHHHhc-CCCcEEEEEEchHHHHHHHHHhhcCC
Q 038643 2 VGVVADISASVDWLKAN-GSKKVGMVGYCMGSALTIACSASLME 44 (52)
Q Consensus 2 ~~~~~d~~~~~~~l~~~-~~~~i~l~G~S~GG~~a~~~a~~~p~ 44 (52)
++...|+..++++..++ ..+++.++|+|+|+-+.-....+.|.
T Consensus 48 ~~~a~Dl~~~i~~y~~~w~~~~vvLiGYSFGADvlP~~~nrLp~ 91 (192)
T PF06057_consen 48 EQTAADLARIIRHYRARWGRKRVVLIGYSFGADVLPFIYNRLPA 91 (192)
T ss_pred HHHHHHHHHHHHHHHHHhCCceEEEEeecCCchhHHHHHhhCCH
Confidence 56788999999877776 57899999999999776666555553
No 135
>PLN02571 triacylglycerol lipase
Probab=97.69 E-value=8e-05 Score=45.03 Aligned_cols=20 Identities=20% Similarity=0.413 Sum_probs=17.9
Q ss_pred cEEEEEEchHHHHHHHHHhh
Q 038643 22 KVGMVGYCMGSALTIACSAS 41 (52)
Q Consensus 22 ~i~l~G~S~GG~~a~~~a~~ 41 (52)
+|.+.||||||.+|...|..
T Consensus 227 sI~VTGHSLGGALAtLaA~d 246 (413)
T PLN02571 227 SITICGHSLGAALATLNAVD 246 (413)
T ss_pred cEEEeccchHHHHHHHHHHH
Confidence 68999999999999998854
No 136
>KOG1553 consensus Predicted alpha/beta hydrolase BAT5 [General function prediction only]
Probab=97.66 E-value=0.00011 Score=44.29 Aligned_cols=44 Identities=11% Similarity=0.150 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhc---CCCcEEEEEEchHHHHHHHHHhhcCCceeEe
Q 038643 6 ADISASVDWLKAN---GSKKVGMVGYCMGSALTIACSASLMERKHTF 49 (52)
Q Consensus 6 ~d~~~~~~~l~~~---~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~ 49 (52)
.-++++++|.-+. ..+.|++.|||.||+.+...|..+|+.++.+
T Consensus 293 nA~DaVvQfAI~~Lgf~~edIilygWSIGGF~~~waAs~YPdVkavv 339 (517)
T KOG1553|consen 293 NAADAVVQFAIQVLGFRQEDIILYGWSIGGFPVAWAASNYPDVKAVV 339 (517)
T ss_pred HHHHHHHHHHHHHcCCCccceEEEEeecCCchHHHHhhcCCCceEEE
Confidence 3455666775444 2688999999999999999999999877654
No 137
>PLN02934 triacylglycerol lipase
Probab=97.65 E-value=0.00016 Score=44.73 Aligned_cols=33 Identities=24% Similarity=0.373 Sum_probs=24.2
Q ss_pred HHHHHHH-HHhcCCCcEEEEEEchHHHHHHHHHh
Q 038643 8 ISASVDW-LKANGSKKVGMVGYCMGSALTIACSA 40 (52)
Q Consensus 8 ~~~~~~~-l~~~~~~~i~l~G~S~GG~~a~~~a~ 40 (52)
+...++- +++.+..++.+.|||+||.+|..++.
T Consensus 307 v~~~lk~ll~~~p~~kIvVTGHSLGGALAtLaA~ 340 (515)
T PLN02934 307 VRSKLKSLLKEHKNAKFVVTGHSLGGALAILFPT 340 (515)
T ss_pred HHHHHHHHHHHCCCCeEEEeccccHHHHHHHHHH
Confidence 4444433 33335678999999999999999874
No 138
>COG0627 Predicted esterase [General function prediction only]
Probab=97.62 E-value=4.1e-05 Score=44.79 Aligned_cols=27 Identities=15% Similarity=0.158 Sum_probs=24.0
Q ss_pred cEEEEEEchHHHHHHHHHhhcCCceeE
Q 038643 22 KVGMVGYCMGSALTIACSASLMERKHT 48 (52)
Q Consensus 22 ~i~l~G~S~GG~~a~~~a~~~p~~~~~ 48 (52)
+..++||||||.-|+.+|.++|++...
T Consensus 153 ~~aI~G~SMGG~GAl~lA~~~pd~f~~ 179 (316)
T COG0627 153 GRAIAGHSMGGYGALKLALKHPDRFKS 179 (316)
T ss_pred CceeEEEeccchhhhhhhhhCcchhce
Confidence 789999999999999999999886543
No 139
>PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases.
Probab=97.61 E-value=9.7e-05 Score=40.82 Aligned_cols=20 Identities=15% Similarity=0.416 Sum_probs=16.6
Q ss_pred CcEEEEEEchHHHHHHHHHh
Q 038643 21 KKVGMVGYCMGSALTIACSA 40 (52)
Q Consensus 21 ~~i~l~G~S~GG~~a~~~a~ 40 (52)
.+|.++||||||.++-.+..
T Consensus 78 ~~IsfIgHSLGGli~r~al~ 97 (217)
T PF05057_consen 78 RKISFIGHSLGGLIARYALG 97 (217)
T ss_pred ccceEEEecccHHHHHHHHH
Confidence 58999999999999765543
No 140
>PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3.1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A ....
Probab=97.61 E-value=0.00031 Score=41.25 Aligned_cols=40 Identities=13% Similarity=0.232 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhc---CCCcEEEEEEchHHHHHHHHHhhcCC
Q 038643 5 VADISASVDWLKAN---GSKKVGMVGYCMGSALTIACSASLME 44 (52)
Q Consensus 5 ~~d~~~~~~~l~~~---~~~~i~l~G~S~GG~~a~~~a~~~p~ 44 (52)
-+.+..++++|... +.+++.++|||+||.++-..+.....
T Consensus 131 g~~la~~l~~L~~~~g~~~~~ihlIGhSLGAHvaG~aG~~~~~ 173 (331)
T PF00151_consen 131 GRQLAKFLSFLINNFGVPPENIHLIGHSLGAHVAGFAGKYLKG 173 (331)
T ss_dssp HHHHHHHHHHHHHHH---GGGEEEEEETCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhhcCCChhHEEEEeeccchhhhhhhhhhccC
Confidence 34556667777632 36899999999999999988866544
No 141
>PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=97.60 E-value=0.00013 Score=42.35 Aligned_cols=41 Identities=15% Similarity=0.319 Sum_probs=33.8
Q ss_pred hHHHHHHHHHHHHHhc-----C------CCcEEEEEEchHHHHHHHHHhhcC
Q 038643 3 GVVADISASVDWLKAN-----G------SKKVGMVGYCMGSALTIACSASLM 43 (52)
Q Consensus 3 ~~~~d~~~~~~~l~~~-----~------~~~i~l~G~S~GG~~a~~~a~~~p 43 (52)
.++++...+++|+.+. + ..++.++|||.||..|..+|..+.
T Consensus 91 ~Ei~~aa~V~~WL~~gL~~~Lp~~V~~nl~klal~GHSrGGktAFAlALg~a 142 (307)
T PF07224_consen 91 DEIKSAASVINWLPEGLQHVLPENVEANLSKLALSGHSRGGKTAFALALGYA 142 (307)
T ss_pred HHHHHHHHHHHHHHhhhhhhCCCCcccccceEEEeecCCccHHHHHHHhccc
Confidence 4577888999998774 1 378999999999999999997663
No 142
>PF01083 Cutinase: Cutinase; InterPro: IPR000675 Aerial plant organs are protected by a cuticle composed of an insoluble polymeric structural compound, cutin, which is a polyester composed of hydroxy and hydroxyepoxy fatty acids []. Plant pathogenic fungi produce extracellular degradative enzymes [] that play an important role in pathogenesis. They include cutinase, which hydrolyses cutin, facilitating fungus penetration through the cuticle. Inhibition of the enzyme can prevent fungal infection through intact cuticles. Cutin monomers released from the cuticle by small amounts of cutinase on fungal spore surfaces can greatly increase the amount of cutinase secreted by the spore, the mechanism for which process is as yet unknown [, ]. Cutinase is a serine esterase containing the classical Ser, His, Asp triad of serine hydrolases []. The protein belongs to the alpha-beta class, with a central beta-sheet of 5 parallel strands covered by 5 helices on either side of the sheet. The active site cleft is partly covered by 2 thin bridges formed by amino acid side chains, by contrast with the hydrophobic lid possessed by other lipases []. The protein also contains 2 disulphide bridges, which are essential for activity, their cleavage resulting in complete loss of enzymatic activity []. Two cutinase-like proteins (MtCY39.35 and MtCY339.08c) have been found in the genome of the bacteria Mycobacterium tuberculosis.; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 1XZK_A 1XZA_A 1CUD_C 1XZI_A 1XZH_A 1CUF_A 1FFD_A 2CUT_A 1FFA_A 1CUA_A ....
Probab=97.58 E-value=0.00044 Score=37.42 Aligned_cols=36 Identities=17% Similarity=0.281 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhc-CCCcEEEEEEchHHHHHHHHHhh
Q 038643 6 ADISASVDWLKAN-GSKKVGMVGYCMGSALTIACSAS 41 (52)
Q Consensus 6 ~d~~~~~~~l~~~-~~~~i~l~G~S~GG~~a~~~a~~ 41 (52)
.++...++....+ |..++++.|||.|+.++..+...
T Consensus 65 ~~~~~~i~~~~~~CP~~kivl~GYSQGA~V~~~~~~~ 101 (179)
T PF01083_consen 65 ANLVRLIEEYAARCPNTKIVLAGYSQGAMVVGDALSG 101 (179)
T ss_dssp HHHHHHHHHHHHHSTTSEEEEEEETHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCEEEEecccccHHHHHHHHh
Confidence 3444444333333 56799999999999999998766
No 143
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=97.57 E-value=0.00018 Score=41.37 Aligned_cols=30 Identities=10% Similarity=0.277 Sum_probs=25.4
Q ss_pred CCcEEEEEEchHHHHHHHHHhhcCCceeEe
Q 038643 20 SKKVGMVGYCMGSALTIACSASLMERKHTF 49 (52)
Q Consensus 20 ~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~ 49 (52)
.++.+++|||+||.+++.....+|+....+
T Consensus 136 ~~~~~i~GhSlGGLfvl~aLL~~p~~F~~y 165 (264)
T COG2819 136 SERTAIIGHSLGGLFVLFALLTYPDCFGRY 165 (264)
T ss_pred cccceeeeecchhHHHHHHHhcCcchhcee
Confidence 467899999999999999999998865543
No 144
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=97.53 E-value=0.00042 Score=39.77 Aligned_cols=40 Identities=23% Similarity=0.354 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHHhcC-----------CCcEEEEEEchHHHHHHHHHhhc
Q 038643 3 GVVADISASVDWLKANG-----------SKKVGMVGYCMGSALTIACSASL 42 (52)
Q Consensus 3 ~~~~d~~~~~~~l~~~~-----------~~~i~l~G~S~GG~~a~~~a~~~ 42 (52)
...+++.+.++|+.+.- ..++++.|||-||.++..++..+
T Consensus 62 ~~~~~~~~vi~Wl~~~L~~~l~~~v~~D~s~l~l~GHSrGGk~Af~~al~~ 112 (259)
T PF12740_consen 62 DEVASAAEVIDWLAKGLESKLPLGVKPDFSKLALAGHSRGGKVAFAMALGN 112 (259)
T ss_pred hhHHHHHHHHHHHHhcchhhccccccccccceEEeeeCCCCHHHHHHHhhh
Confidence 45778888999987631 25899999999999999998776
No 145
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=97.52 E-value=0.00039 Score=41.99 Aligned_cols=37 Identities=11% Similarity=0.338 Sum_probs=25.2
Q ss_pred HHHHhcCCCcEEEEEEchHHHHHHHHHhhc-----CCceeEee
Q 038643 13 DWLKANGSKKVGMVGYCMGSALTIACSASL-----MERKHTFR 50 (52)
Q Consensus 13 ~~l~~~~~~~i~l~G~S~GG~~a~~~a~~~-----p~~~~~~~ 50 (52)
++++..+.+ +.++|+|+||..++.+++.+ |..++.++
T Consensus 161 ~~i~~~G~~-v~l~GvCqgG~~~laa~Al~a~~~~p~~~~slt 202 (406)
T TIGR01849 161 EFIRFLGPD-IHVIAVCQPAVPVLAAVALMAENEPPAQPRSMT 202 (406)
T ss_pred HHHHHhCCC-CcEEEEchhhHHHHHHHHHHHhcCCCCCcceEE
Confidence 444434444 99999999999988777665 44455543
No 146
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=97.51 E-value=0.0013 Score=35.46 Aligned_cols=43 Identities=9% Similarity=0.010 Sum_probs=29.2
Q ss_pred HHHHHHHHHhc---CCCcEEEEEEchHHHHHHHHH-hhcCCceeEee
Q 038643 8 ISASVDWLKAN---GSKKVGMVGYCMGSALTIACS-ASLMERKHTFR 50 (52)
Q Consensus 8 ~~~~~~~l~~~---~~~~i~l~G~S~GG~~a~~~a-~~~p~~~~~~~ 50 (52)
.+.-++.+++. ..+++.++|||+|...++.++ ...+..++++.
T Consensus 39 ~~~W~~~l~~~i~~~~~~~ilVaHSLGc~~~l~~l~~~~~~~v~g~l 85 (171)
T PF06821_consen 39 LDEWVQALDQAIDAIDEPTILVAHSLGCLTALRWLAEQSQKKVAGAL 85 (171)
T ss_dssp HHHHHHHHHHCCHC-TTTEEEEEETHHHHHHHHHHHHTCCSSEEEEE
T ss_pred HHHHHHHHHHHHhhcCCCeEEEEeCHHHHHHHHHHhhcccccccEEE
Confidence 33444444444 146789999999999999999 55555666543
No 147
>PLN02408 phospholipase A1
Probab=97.51 E-value=0.00021 Score=42.71 Aligned_cols=21 Identities=19% Similarity=0.324 Sum_probs=18.1
Q ss_pred CcEEEEEEchHHHHHHHHHhh
Q 038643 21 KKVGMVGYCMGSALTIACSAS 41 (52)
Q Consensus 21 ~~i~l~G~S~GG~~a~~~a~~ 41 (52)
.+|.+.|||+||.+|...|..
T Consensus 200 ~sI~vTGHSLGGALAtLaA~d 220 (365)
T PLN02408 200 LSLTITGHSLGAALATLTAYD 220 (365)
T ss_pred ceEEEeccchHHHHHHHHHHH
Confidence 369999999999999988753
No 148
>COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only]
Probab=97.51 E-value=0.00024 Score=41.01 Aligned_cols=38 Identities=16% Similarity=0.120 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhcC-CCcEEEEEEchHHHHHHHHHhhc
Q 038643 5 VADISASVDWLKANG-SKKVGMVGYCMGSALTIACSASL 42 (52)
Q Consensus 5 ~~d~~~~~~~l~~~~-~~~i~l~G~S~GG~~a~~~a~~~ 42 (52)
..-+..++.+|+++- .+++-.+||||||.-..+++..+
T Consensus 119 s~wlk~~msyL~~~Y~i~k~n~VGhSmGg~~~~~Y~~~y 157 (288)
T COG4814 119 SKWLKKAMSYLQKHYNIPKFNAVGHSMGGLGLTYYMIDY 157 (288)
T ss_pred HHHHHHHHHHHHHhcCCceeeeeeeccccHHHHHHHHHh
Confidence 456778889998884 78999999999999988888664
No 149
>COG4188 Predicted dienelactone hydrolase [General function prediction only]
Probab=97.50 E-value=0.00014 Score=43.40 Aligned_cols=40 Identities=25% Similarity=0.319 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHhc---C-------CCcEEEEEEchHHHHHHHHHhhcC
Q 038643 4 VVADISASVDWLKAN---G-------SKKVGMVGYCMGSALTIACSASLM 43 (52)
Q Consensus 4 ~~~d~~~~~~~l~~~---~-------~~~i~l~G~S~GG~~a~~~a~~~p 43 (52)
...|+...+++|.+. + ..+|+++|||+||..++..+....
T Consensus 132 rp~dis~lLd~L~~~~~sP~l~~~ld~~~Vgv~GhS~GG~T~m~laGA~~ 181 (365)
T COG4188 132 RPLDISALLDALLQLTASPALAGRLDPQRVGVLGHSFGGYTAMELAGAEL 181 (365)
T ss_pred ccccHHHHHHHHHHhhcCcccccccCccceEEEecccccHHHHHhccccc
Confidence 346888899998887 4 478999999999999999886543
No 150
>TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae
Probab=97.48 E-value=0.00037 Score=45.01 Aligned_cols=40 Identities=20% Similarity=0.172 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHHHHH------h-------cCCCcEEEEEEchHHHHHHHHHhh
Q 038643 2 VGVVADISASVDWLK------A-------NGSKKVGMVGYCMGSALTIACSAS 41 (52)
Q Consensus 2 ~~~~~d~~~~~~~l~------~-------~~~~~i~l~G~S~GG~~a~~~a~~ 41 (52)
++.+.|+......+. . .+..++.++||||||.++..++..
T Consensus 523 rQ~v~Dll~L~~~l~~~~~~~~~~~~~~~~~~~~V~~lGHSLGgiig~~~~~~ 575 (792)
T TIGR03502 523 RQSILDLLGLRLSLNGSALAGAPLSGINVIDGSKVSFLGHSLGGIVGTSFIAY 575 (792)
T ss_pred HHHHHHHHHHHHHHhcccccccccccccCCCCCcEEEEecCHHHHHHHHHHHh
Confidence 456678887777776 2 124689999999999999999965
No 151
>PLN02753 triacylglycerol lipase
Probab=97.46 E-value=0.00028 Score=43.87 Aligned_cols=20 Identities=25% Similarity=0.413 Sum_probs=18.2
Q ss_pred CcEEEEEEchHHHHHHHHHh
Q 038643 21 KKVGMVGYCMGSALTIACSA 40 (52)
Q Consensus 21 ~~i~l~G~S~GG~~a~~~a~ 40 (52)
.+|.+.|||+||.+|...|.
T Consensus 312 ~sItVTGHSLGGALAtLaA~ 331 (531)
T PLN02753 312 LSITVTGHSLGGALAILSAY 331 (531)
T ss_pred ceEEEEccCHHHHHHHHHHH
Confidence 58999999999999999884
No 152
>KOG2369 consensus Lecithin:cholesterol acyltransferase (LCAT)/Acyl-ceramide synthase [Lipid transport and metabolism]
Probab=97.46 E-value=0.00034 Score=42.96 Aligned_cols=40 Identities=13% Similarity=0.177 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHhcC-CCcEEEEEEchHHHHHHHHHhhcCC
Q 038643 5 VADISASVDWLKANG-SKKVGMVGYCMGSALTIACSASLME 44 (52)
Q Consensus 5 ~~d~~~~~~~l~~~~-~~~i~l~G~S~GG~~a~~~a~~~p~ 44 (52)
...+...++.+-+.. .+|+.+++||||+.+.+++.-.+++
T Consensus 165 l~kLK~~iE~~~~~~G~kkVvlisHSMG~l~~lyFl~w~~~ 205 (473)
T KOG2369|consen 165 LSKLKKKIETMYKLNGGKKVVLISHSMGGLYVLYFLKWVEA 205 (473)
T ss_pred HHHHHHHHHHHHHHcCCCceEEEecCCccHHHHHHHhcccc
Confidence 344445555544443 5899999999999999999877665
No 153
>PLN02324 triacylglycerol lipase
Probab=97.44 E-value=0.00025 Score=42.95 Aligned_cols=20 Identities=15% Similarity=0.443 Sum_probs=17.8
Q ss_pred CcEEEEEEchHHHHHHHHHh
Q 038643 21 KKVGMVGYCMGSALTIACSA 40 (52)
Q Consensus 21 ~~i~l~G~S~GG~~a~~~a~ 40 (52)
.+|.+.|||+||.+|...|.
T Consensus 215 ~sItvTGHSLGGALAtLaA~ 234 (415)
T PLN02324 215 ISITFTGHSLGAVMSVLSAA 234 (415)
T ss_pred ceEEEecCcHHHHHHHHHHH
Confidence 36999999999999998885
No 154
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.39 E-value=0.00073 Score=40.51 Aligned_cols=37 Identities=14% Similarity=0.214 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHHhcC-CCcEEEEEEchHHHHHHHHH
Q 038643 3 GVVADISASVDWLKANG-SKKVGMVGYCMGSALTIACS 39 (52)
Q Consensus 3 ~~~~d~~~~~~~l~~~~-~~~i~l~G~S~GG~~a~~~a 39 (52)
....+++.++++|.+.+ .++|.+++||||..+++...
T Consensus 172 ~Sr~aLe~~lr~La~~~~~~~I~ilAHSMGtwl~~e~L 209 (377)
T COG4782 172 YSRPALERLLRYLATDKPVKRIYLLAHSMGTWLLMEAL 209 (377)
T ss_pred hhHHHHHHHHHHHHhCCCCceEEEEEecchHHHHHHHH
Confidence 35678899999998875 78999999999999987765
No 155
>COG4099 Predicted peptidase [General function prediction only]
Probab=97.39 E-value=0.00037 Score=41.28 Aligned_cols=32 Identities=13% Similarity=0.125 Sum_probs=27.4
Q ss_pred CCcEEEEEEchHHHHHHHHHhhcCCceeE-eee
Q 038643 20 SKKVGMVGYCMGSALTIACSASLMERKHT-FRM 51 (52)
Q Consensus 20 ~~~i~l~G~S~GG~~a~~~a~~~p~~~~~-~~~ 51 (52)
..||.++|.|+||+.++.++.++|+..++ +++
T Consensus 268 ~sRIYviGlSrG~~gt~al~~kfPdfFAaa~~i 300 (387)
T COG4099 268 RSRIYVIGLSRGGFGTWALAEKFPDFFAAAVPI 300 (387)
T ss_pred cceEEEEeecCcchhhHHHHHhCchhhheeeee
Confidence 58999999999999999999999996544 443
No 156
>PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria. Their function is unknown.
Probab=97.37 E-value=0.00072 Score=42.27 Aligned_cols=32 Identities=16% Similarity=0.238 Sum_probs=29.5
Q ss_pred CcEEEEEEchHHHHHHHHHhhcCCceeEeeeC
Q 038643 21 KKVGMVGYCMGSALTIACSASLMERKHTFRMN 52 (52)
Q Consensus 21 ~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~~~ 52 (52)
.|..++|-|.||..++.+|+.+|+.++-+++|
T Consensus 140 ~kp~liGnCQgGWa~~mlAA~~Pd~~gplvla 171 (581)
T PF11339_consen 140 PKPNLIGNCQGGWAAMMLAALRPDLVGPLVLA 171 (581)
T ss_pred CCceEEeccHHHHHHHHHHhcCcCccCceeec
Confidence 48899999999999999999999999888876
No 157
>PLN02761 lipase class 3 family protein
Probab=97.37 E-value=0.00043 Score=43.03 Aligned_cols=20 Identities=15% Similarity=0.404 Sum_probs=17.8
Q ss_pred CcEEEEEEchHHHHHHHHHh
Q 038643 21 KKVGMVGYCMGSALTIACSA 40 (52)
Q Consensus 21 ~~i~l~G~S~GG~~a~~~a~ 40 (52)
.+|.+.|||+||.+|...|.
T Consensus 294 ~sItVTGHSLGGALAtLaA~ 313 (527)
T PLN02761 294 ISITVTGHSLGASLALVSAY 313 (527)
T ss_pred ceEEEeccchHHHHHHHHHH
Confidence 47999999999999998874
No 158
>PLN02719 triacylglycerol lipase
Probab=97.30 E-value=0.00078 Score=41.84 Aligned_cols=20 Identities=20% Similarity=0.398 Sum_probs=17.9
Q ss_pred CcEEEEEEchHHHHHHHHHh
Q 038643 21 KKVGMVGYCMGSALTIACSA 40 (52)
Q Consensus 21 ~~i~l~G~S~GG~~a~~~a~ 40 (52)
.+|.+.|||+||.+|...|.
T Consensus 298 ~sItVTGHSLGGALAtLaA~ 317 (518)
T PLN02719 298 LSITVTGHSLGGALAVLSAY 317 (518)
T ss_pred ceEEEecCcHHHHHHHHHHH
Confidence 47999999999999999874
No 159
>PLN02802 triacylglycerol lipase
Probab=97.30 E-value=0.00045 Score=42.80 Aligned_cols=21 Identities=19% Similarity=0.417 Sum_probs=18.1
Q ss_pred CcEEEEEEchHHHHHHHHHhh
Q 038643 21 KKVGMVGYCMGSALTIACSAS 41 (52)
Q Consensus 21 ~~i~l~G~S~GG~~a~~~a~~ 41 (52)
.+|.+.|||+||.+|...|..
T Consensus 330 ~sI~VTGHSLGGALAtLaA~d 350 (509)
T PLN02802 330 LSITVTGHSLGAALALLVADE 350 (509)
T ss_pred ceEEEeccchHHHHHHHHHHH
Confidence 479999999999999988753
No 160
>COG1075 LipA Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=97.29 E-value=0.0008 Score=39.49 Aligned_cols=25 Identities=32% Similarity=0.384 Sum_probs=22.7
Q ss_pred CCCcEEEEEEchHHHHHHHHHhhcC
Q 038643 19 GSKKVGMVGYCMGSALTIACSASLM 43 (52)
Q Consensus 19 ~~~~i~l~G~S~GG~~a~~~a~~~p 43 (52)
+.+++.++||||||..+..+....+
T Consensus 125 ga~~v~LigHS~GG~~~ry~~~~~~ 149 (336)
T COG1075 125 GAKKVNLIGHSMGGLDSRYYLGVLG 149 (336)
T ss_pred CCCceEEEeecccchhhHHHHhhcC
Confidence 4689999999999999999998877
No 161
>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=97.28 E-value=0.0026 Score=37.12 Aligned_cols=42 Identities=19% Similarity=0.304 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHHHhcCCCcEEEEEEchHHHHHHHHHhhcCC
Q 038643 3 GVVADISASVDWLKANGSKKVGMVGYCMGSALTIACSASLME 44 (52)
Q Consensus 3 ~~~~d~~~~~~~l~~~~~~~i~l~G~S~GG~~a~~~a~~~p~ 44 (52)
....-+.++++++++++..+++++||..|+..+..+....+.
T Consensus 175 ~~~ari~Aa~~~~~~~~~~~ivlIg~G~gA~~~~~~la~~~~ 216 (310)
T PF12048_consen 175 RLFARIEAAIAFAQQQGGKNIVLIGHGTGAGWAARYLAEKPP 216 (310)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEEeChhHHHHHHHHhcCCC
Confidence 455678888999988876779999999999999999988764
No 162
>PF06259 Abhydrolase_8: Alpha/beta hydrolase; InterPro: IPR010427 This is a family of uncharacterised proteins found in Actinobacteria. Computational analysis suggests that they may belong to the alpha-beta hydrolase family of enzymes, as they are predicted to form the core secondary structures and catalytic machinery common to these proteins []. Genomic context suggests that they may function as lipases, controlling the concentration of their putative phospholipid substrates.
Probab=97.27 E-value=0.0021 Score=35.04 Aligned_cols=37 Identities=19% Similarity=0.262 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhc--CCCcEEEEEEchHHHHHHHHHhh
Q 038643 5 VADISASVDWLKAN--GSKKVGMVGYCMGSALTIACSAS 41 (52)
Q Consensus 5 ~~d~~~~~~~l~~~--~~~~i~l~G~S~GG~~a~~~a~~ 41 (52)
..++..+++-|+.. +..++.++|||+|+.++-..+..
T Consensus 91 a~~L~~f~~gl~a~~~~~~~~tv~GHSYGS~v~G~A~~~ 129 (177)
T PF06259_consen 91 APRLARFLDGLRATHGPDAHLTVVGHSYGSTVVGLAAQQ 129 (177)
T ss_pred HHHHHHHHHHhhhhcCCCCCEEEEEecchhHHHHHHhhh
Confidence 34556666666554 35789999999999998887765
No 163
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=97.25 E-value=0.0013 Score=43.29 Aligned_cols=30 Identities=20% Similarity=0.291 Sum_probs=23.4
Q ss_pred CCcEEEEEEchHHHHHHHHHhh---cCCceeEe
Q 038643 20 SKKVGMVGYCMGSALTIACSAS---LMERKHTF 49 (52)
Q Consensus 20 ~~~i~l~G~S~GG~~a~~~a~~---~p~~~~~~ 49 (52)
..++.++||||||.++..+|.+ .|+.+..+
T Consensus 1132 ~~p~~l~G~S~Gg~vA~e~A~~l~~~~~~v~~l 1164 (1296)
T PRK10252 1132 HGPYHLLGYSLGGTLAQGIAARLRARGEEVAFL 1164 (1296)
T ss_pred CCCEEEEEechhhHHHHHHHHHHHHcCCceeEE
Confidence 4589999999999999999975 34545443
No 164
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=97.24 E-value=0.00089 Score=40.35 Aligned_cols=38 Identities=21% Similarity=0.308 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHhc------CCCcEEEEEEchHHHHHHHHHhh
Q 038643 4 VVADISASVDWLKAN------GSKKVGMVGYCMGSALTIACSAS 41 (52)
Q Consensus 4 ~~~d~~~~~~~l~~~------~~~~i~l~G~S~GG~~a~~~a~~ 41 (52)
...|...+++|+++. .+++|.++|+|-||..+..++..
T Consensus 153 g~~D~~~al~wv~~~i~~fggd~~~v~~~G~SaG~~~~~~~~~~ 196 (493)
T cd00312 153 GLKDQRLALKWVQDNIAAFGGDPDSVTIFGESAGGASVSLLLLS 196 (493)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCcceEEEEeecHHHHHhhhHhhC
Confidence 467999999999986 26899999999999998888754
No 165
>PLN02517 phosphatidylcholine-sterol O-acyltransferase
Probab=97.21 E-value=0.00099 Score=42.21 Aligned_cols=36 Identities=19% Similarity=0.290 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhcC-CCcEEEEEEchHHHHHHHHHh
Q 038643 5 VADISASVDWLKANG-SKKVGMVGYCMGSALTIACSA 40 (52)
Q Consensus 5 ~~d~~~~~~~l~~~~-~~~i~l~G~S~GG~~a~~~a~ 40 (52)
...+...++.+.+.. .+|++++||||||.+++.+..
T Consensus 196 F~rLK~lIE~ay~~nggkKVVLV~HSMGglv~lyFL~ 232 (642)
T PLN02517 196 LSRLKSNIELMVATNGGKKVVVVPHSMGVLYFLHFMK 232 (642)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEEeCCchHHHHHHHH
Confidence 345666666655443 589999999999999999875
No 166
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=97.20 E-value=0.0021 Score=35.35 Aligned_cols=35 Identities=31% Similarity=0.541 Sum_probs=21.3
Q ss_pred HHHHHHHHHHH----hcCCCcEEEEEEchHHHHHHHHHhh
Q 038643 6 ADISASVDWLK----ANGSKKVGMVGYCMGSALTIACSAS 41 (52)
Q Consensus 6 ~d~~~~~~~l~----~~~~~~i~l~G~S~GG~~a~~~a~~ 41 (52)
.+++.+++++. +.+ .-.+++|+|.||.++..++..
T Consensus 84 ~~~~~sl~~l~~~i~~~G-PfdGvlGFSQGA~lAa~ll~~ 122 (212)
T PF03959_consen 84 EGLDESLDYLRDYIEENG-PFDGVLGFSQGAALAALLLAL 122 (212)
T ss_dssp ---HHHHHHHHHHHHHH----SEEEEETHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhcC-CeEEEEeecHHHHHHHHHHHH
Confidence 34444444444 333 346899999999999988854
No 167
>smart00824 PKS_TE Thioesterase. Peptide synthetases are involved in the non-ribosomal synthesis of peptide antibiotics. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates. There are also modules within the peptide synthetases that also share this similarity. With respect to antibiotic production, thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Thioesterases (non-integrated) have molecular masses of 25-29 kDa.
Probab=97.17 E-value=0.0041 Score=32.65 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=19.4
Q ss_pred CCcEEEEEEchHHHHHHHHHhh
Q 038643 20 SKKVGMVGYCMGSALTIACSAS 41 (52)
Q Consensus 20 ~~~i~l~G~S~GG~~a~~~a~~ 41 (52)
..++.++|||+||.++...+..
T Consensus 63 ~~~~~l~g~s~Gg~~a~~~a~~ 84 (212)
T smart00824 63 GRPFVLVGHSSGGLLAHAVAAR 84 (212)
T ss_pred CCCeEEEEECHHHHHHHHHHHH
Confidence 5678999999999999888875
No 168
>KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism]
Probab=97.14 E-value=0.00026 Score=42.11 Aligned_cols=31 Identities=23% Similarity=0.397 Sum_probs=25.7
Q ss_pred CcEEEEEEchHHHHHHHHHhhcCCceeEeee
Q 038643 21 KKVGMVGYCMGSALTIACSASLMERKHTFRM 51 (52)
Q Consensus 21 ~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~~ 51 (52)
.++.++|||+||+.+....+.+.+...++.+
T Consensus 241 s~~aViGHSFGgAT~i~~ss~~t~FrcaI~l 271 (399)
T KOG3847|consen 241 SQAAVIGHSFGGATSIASSSSHTDFRCAIAL 271 (399)
T ss_pred hhhhheeccccchhhhhhhccccceeeeeee
Confidence 5788999999999999988877777766654
No 169
>KOG4569 consensus Predicted lipase [Lipid transport and metabolism]
Probab=97.14 E-value=0.0013 Score=38.75 Aligned_cols=34 Identities=18% Similarity=0.217 Sum_probs=24.0
Q ss_pred HHHHHHHHHhc-CCCcEEEEEEchHHHHHHHHHhh
Q 038643 8 ISASVDWLKAN-GSKKVGMVGYCMGSALTIACSAS 41 (52)
Q Consensus 8 ~~~~~~~l~~~-~~~~i~l~G~S~GG~~a~~~a~~ 41 (52)
+.+-++.|... +.-+|.+.|||+||.+|...|..
T Consensus 157 ~~~~~~~L~~~~~~~~i~vTGHSLGgAlA~laa~~ 191 (336)
T KOG4569|consen 157 LDAELRRLIELYPNYSIWVTGHSLGGALASLAALD 191 (336)
T ss_pred HHHHHHHHHHhcCCcEEEEecCChHHHHHHHHHHH
Confidence 33444444333 45789999999999999988853
No 170
>PLN02847 triacylglycerol lipase
Probab=97.11 E-value=0.0013 Score=41.63 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=19.7
Q ss_pred CCCcEEEEEEchHHHHHHHHHhh
Q 038643 19 GSKKVGMVGYCMGSALTIACSAS 41 (52)
Q Consensus 19 ~~~~i~l~G~S~GG~~a~~~a~~ 41 (52)
+.-++.++|||+||.+|..++..
T Consensus 249 PdYkLVITGHSLGGGVAALLAil 271 (633)
T PLN02847 249 PDFKIKIVGHSLGGGTAALLTYI 271 (633)
T ss_pred CCCeEEEeccChHHHHHHHHHHH
Confidence 45689999999999999988754
No 171
>KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism]
Probab=97.07 E-value=0.00055 Score=41.34 Aligned_cols=43 Identities=21% Similarity=0.260 Sum_probs=37.0
Q ss_pred hhHHHHHHHHHHHHHhc-CCCcEEEEEEchHHHHHHHHHhhcCC
Q 038643 2 VGVVADISASVDWLKAN-GSKKVGMVGYCMGSALTIACSASLME 44 (52)
Q Consensus 2 ~~~~~d~~~~~~~l~~~-~~~~i~l~G~S~GG~~a~~~a~~~p~ 44 (52)
|-..-|+.+++||+.+. +.+++..+|||.|........+.+|+
T Consensus 141 Em~~yDLPA~IdyIL~~T~~~kl~yvGHSQGtt~~fv~lS~~p~ 184 (403)
T KOG2624|consen 141 EMGTYDLPAMIDYILEKTGQEKLHYVGHSQGTTTFFVMLSERPE 184 (403)
T ss_pred hhhhcCHHHHHHHHHHhccccceEEEEEEccchhheehhcccch
Confidence 34567999999998876 47899999999999999999888876
No 172
>KOG2112 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=97.01 E-value=0.0026 Score=35.55 Aligned_cols=41 Identities=27% Similarity=0.419 Sum_probs=29.1
Q ss_pred HHHHHHHHHhcC--CCcEEEEEEchHHHHHHHHHhhcCCceeE
Q 038643 8 ISASVDWLKANG--SKKVGMVGYCMGSALTIACSASLMERKHT 48 (52)
Q Consensus 8 ~~~~~~~l~~~~--~~~i~l~G~S~GG~~a~~~a~~~p~~~~~ 48 (52)
+...++.-.+.+ ..+|.+-|+||||.++++.+..+|....+
T Consensus 78 i~~Li~~e~~~Gi~~~rI~igGfs~G~a~aL~~~~~~~~~l~G 120 (206)
T KOG2112|consen 78 IANLIDNEPANGIPSNRIGIGGFSQGGALALYSALTYPKALGG 120 (206)
T ss_pred HHHHHHHHHHcCCCccceeEcccCchHHHHHHHHhccccccce
Confidence 334444433332 57899999999999999999988665443
No 173
>KOG4667 consensus Predicted esterase [Lipid transport and metabolism]
Probab=97.00 E-value=0.0021 Score=36.75 Aligned_cols=43 Identities=7% Similarity=0.225 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEchHHHHHHHHHhhcCCce
Q 038643 4 VVADISASVDWLKANGSKKVGMVGYCMGSALTIACSASLMERK 46 (52)
Q Consensus 4 ~~~d~~~~~~~l~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~ 46 (52)
..+|+..+++++......--.++|||-||-+++.++.+++++.
T Consensus 88 eadDL~sV~q~~s~~nr~v~vi~gHSkGg~Vvl~ya~K~~d~~ 130 (269)
T KOG4667|consen 88 EADDLHSVIQYFSNSNRVVPVILGHSKGGDVVLLYASKYHDIR 130 (269)
T ss_pred hHHHHHHHHHHhccCceEEEEEEeecCccHHHHHHHHhhcCch
Confidence 4599999999997643222258999999999999999988743
No 174
>KOG3101 consensus Esterase D [General function prediction only]
Probab=96.99 E-value=4.8e-05 Score=43.18 Aligned_cols=30 Identities=20% Similarity=0.248 Sum_probs=24.5
Q ss_pred CCcEEEEEEchHHHHHHHHHhhcCCceeEe
Q 038643 20 SKKVGMVGYCMGSALTIACSASLMERKHTF 49 (52)
Q Consensus 20 ~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~ 49 (52)
+.++++.||||||.-|+..+.+.|.+-..+
T Consensus 140 ~~k~~IfGHSMGGhGAl~~~Lkn~~kykSv 169 (283)
T KOG3101|consen 140 PLKVGIFGHSMGGHGALTIYLKNPSKYKSV 169 (283)
T ss_pred chhcceeccccCCCceEEEEEcCcccccce
Confidence 467999999999999999888887754443
No 175
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=96.95 E-value=0.0023 Score=38.45 Aligned_cols=38 Identities=24% Similarity=0.381 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHhc----C--CCcEEEEEEchHHHHHHHHHhh
Q 038643 4 VVADISASVDWLKAN----G--SKKVGMVGYCMGSALTIACSAS 41 (52)
Q Consensus 4 ~~~d~~~~~~~l~~~----~--~~~i~l~G~S~GG~~a~~~a~~ 41 (52)
.+.|...+++|+++. + +++|.++|+|-||..+..+...
T Consensus 185 Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~s 228 (535)
T PF00135_consen 185 GLLDQRLALKWVQDNIAAFGGDPDNVTLFGQSAGAASVSLLLLS 228 (535)
T ss_dssp HHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHG
T ss_pred hhhhhHHHHHHHHhhhhhcccCCcceeeeeecccccccceeeec
Confidence 467999999999987 1 6899999999999988877755
No 176
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=96.93 E-value=0.0037 Score=36.61 Aligned_cols=31 Identities=10% Similarity=0.062 Sum_probs=25.0
Q ss_pred CCcEEEEEEchHHHHHHHHHhhcCCceeEeee
Q 038643 20 SKKVGMVGYCMGSALTIACSASLMERKHTFRM 51 (52)
Q Consensus 20 ~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~~ 51 (52)
.+++..+|||.|+-.|+.++..+| ..+.+-+
T Consensus 103 ~~~~i~~gHSrGcenal~la~~~~-~~g~~li 133 (297)
T PF06342_consen 103 KGKLIFLGHSRGCENALQLAVTHP-LHGLVLI 133 (297)
T ss_pred CCceEEEEeccchHHHHHHHhcCc-cceEEEe
Confidence 478999999999999999999986 3344433
No 177
>KOG1551 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.92 E-value=0.0009 Score=39.27 Aligned_cols=33 Identities=18% Similarity=0.220 Sum_probs=28.9
Q ss_pred CCCcEEEEEEchHHHHHHHHHhhcCCceeEeee
Q 038643 19 GSKKVGMVGYCMGSALTIACSASLMERKHTFRM 51 (52)
Q Consensus 19 ~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~~ 51 (52)
+..+..+.|.||||.++....+.+|..++.+++
T Consensus 193 g~g~~~~~g~Smgg~~a~~vgS~~q~Pva~~p~ 225 (371)
T KOG1551|consen 193 GLGNLNLVGRSMGGDIANQVGSLHQKPVATAPC 225 (371)
T ss_pred CcccceeeeeecccHHHHhhcccCCCCcccccc
Confidence 357899999999999999999999888877765
No 178
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=96.87 E-value=0.004 Score=38.07 Aligned_cols=40 Identities=15% Similarity=0.120 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHHHHHh-cC---CCcEEEEEEchHHHHHHHHHhh
Q 038643 2 VGVVADISASVDWLKA-NG---SKKVGMVGYCMGSALTIACSAS 41 (52)
Q Consensus 2 ~~~~~d~~~~~~~l~~-~~---~~~i~l~G~S~GG~~a~~~a~~ 41 (52)
+...+|+..+++...+ .+ ..++.++|+|+||..+-.+|.+
T Consensus 148 ~~~a~d~~~~l~~f~~~~p~~~~~~~~i~GeSygG~y~p~~a~~ 191 (462)
T PTZ00472 148 SEVSEDMYNFLQAFFGSHEDLRANDLFVVGESYGGHYAPATAYR 191 (462)
T ss_pred HHHHHHHHHHHHHHHHhCccccCCCEEEEeecchhhhHHHHHHH
Confidence 4567788777754433 33 4789999999999999888865
No 179
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=96.84 E-value=0.003 Score=37.03 Aligned_cols=30 Identities=13% Similarity=0.111 Sum_probs=25.8
Q ss_pred CcEEEEEEchHHHHHHHHHhhcCCceeEee
Q 038643 21 KKVGMVGYCMGSALTIACSASLMERKHTFR 50 (52)
Q Consensus 21 ~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~ 50 (52)
..-++.|.|+||.+++..+..+|+....+.
T Consensus 177 ~~r~L~G~SlGG~vsL~agl~~Pe~FG~V~ 206 (299)
T COG2382 177 DGRVLAGDSLGGLVSLYAGLRHPERFGHVL 206 (299)
T ss_pred CCcEEeccccccHHHHHHHhcCchhhceee
Confidence 456799999999999999999999876654
No 180
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=96.79 E-value=0.0028 Score=40.46 Aligned_cols=46 Identities=17% Similarity=0.176 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHhcC---CCcEEEEEEchHHHHHHHHHhhcCCceeEe
Q 038643 4 VVADISASVDWLKANG---SKKVGMVGYCMGSALTIACSASLMERKHTF 49 (52)
Q Consensus 4 ~~~d~~~~~~~l~~~~---~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~ 49 (52)
...|+-++.++|.+++ .+++++.|-|-||++.-..+-..|+..+++
T Consensus 507 Tf~DFIa~a~~Lv~~g~~~~~~i~a~GGSAGGmLmGav~N~~P~lf~~i 555 (682)
T COG1770 507 TFTDFIAAARHLVKEGYTSPDRIVAIGGSAGGMLMGAVANMAPDLFAGI 555 (682)
T ss_pred cHHHHHHHHHHHHHcCcCCccceEEeccCchhHHHHHHHhhChhhhhhe
Confidence 4689999999999885 578999999999999999998888865443
No 181
>KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.0013 Score=41.91 Aligned_cols=47 Identities=23% Similarity=0.287 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHhcC---CCcEEEEEEchHHHHHHHHHhhcCCceeEee
Q 038643 4 VVADISASVDWLKANG---SKKVGMVGYCMGSALTIACSASLMERKHTFR 50 (52)
Q Consensus 4 ~~~d~~~~~~~l~~~~---~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~ 50 (52)
..+|+.++.+||-+++ +.+..+.|.|-||.++-...-.+|+...++.
T Consensus 529 ~f~Dfia~AeyLve~gyt~~~kL~i~G~SaGGlLvga~iN~rPdLF~avi 578 (712)
T KOG2237|consen 529 SFDDFIACAEYLVENGYTQPSKLAIEGGSAGGLLVGACINQRPDLFGAVI 578 (712)
T ss_pred cHHHHHHHHHHHHHcCCCCccceeEecccCccchhHHHhccCchHhhhhh
Confidence 4689999999999985 6899999999999999999888998765543
No 182
>PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.
Probab=96.68 E-value=0.0091 Score=34.29 Aligned_cols=49 Identities=18% Similarity=0.165 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHhcC-----CCcEEEEEEchHHHHHHHHHhhcCCc---eeEeeeC
Q 038643 4 VVADISASVDWLKANG-----SKKVGMVGYCMGSALTIACSASLMER---KHTFRMN 52 (52)
Q Consensus 4 ~~~d~~~~~~~l~~~~-----~~~i~l~G~S~GG~~a~~~a~~~p~~---~~~~~~~ 52 (52)
..+..+.+++.+..+. .-++.-+|||||..+-+.+.+.++.. ...++||
T Consensus 68 ~~~~f~~~~~~L~~~~~~~~~~lP~~~vGHSlGcklhlLi~s~~~~~r~gniliSFN 124 (250)
T PF07082_consen 68 VWERFERCLRALQKRGGLDPAYLPVYGVGHSLGCKLHLLIGSLFDVERAGNILISFN 124 (250)
T ss_pred HHHHHHHHHHHHHHhcCCCcccCCeeeeecccchHHHHHHhhhccCcccceEEEecC
Confidence 3455666777776652 24688899999999988888776432 2445665
No 183
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=96.66 E-value=0.0017 Score=37.37 Aligned_cols=39 Identities=18% Similarity=0.105 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHhc-CCCcEEEEEEchHHHHHHHHHhhcC
Q 038643 4 VVADISASVDWLKAN-GSKKVGMVGYCMGSALTIACSASLM 43 (52)
Q Consensus 4 ~~~d~~~~~~~l~~~-~~~~i~l~G~S~GG~~a~~~a~~~p 43 (52)
...|+.++++++++. +..+...+||||||.+...+. .+|
T Consensus 87 A~~D~~aal~~~~~~~~~~P~y~vgHS~GGqa~gL~~-~~~ 126 (281)
T COG4757 87 ARLDFPAALAALKKALPGHPLYFVGHSFGGQALGLLG-QHP 126 (281)
T ss_pred hhcchHHHHHHHHhhCCCCceEEeeccccceeecccc-cCc
Confidence 457999999999885 456788999999998766555 444
No 184
>KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism]
Probab=96.58 E-value=0.0027 Score=36.11 Aligned_cols=41 Identities=12% Similarity=0.177 Sum_probs=33.1
Q ss_pred ChhHHHHHHHHHHHHHhc-C-CCcEEEEEEchHHHHHHHHHhh
Q 038643 1 NVGVVADISASVDWLKAN-G-SKKVGMVGYCMGSALTIACSAS 41 (52)
Q Consensus 1 ~~~~~~d~~~~~~~l~~~-~-~~~i~l~G~S~GG~~a~~~a~~ 41 (52)
+++...|+-..++|+.+. + .+++.+-|||-|+.++.....+
T Consensus 114 L~qt~~~~~~gv~filk~~~n~k~l~~gGHSaGAHLa~qav~R 156 (270)
T KOG4627|consen 114 LEQTMTQFTHGVNFILKYTENTKVLTFGGHSAGAHLAAQAVMR 156 (270)
T ss_pred HHHHHHHHHHHHHHHHHhcccceeEEEcccchHHHHHHHHHHH
Confidence 356778888889998776 3 5678888999999999988766
No 185
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=96.47 E-value=0.021 Score=34.82 Aligned_cols=47 Identities=17% Similarity=-0.009 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHhc-C--C--CcEEEEEEchHHHHHHHHHhhcCCceeEee
Q 038643 4 VVADISASVDWLKAN-G--S--KKVGMVGYCMGSALTIACSASLMERKHTFR 50 (52)
Q Consensus 4 ~~~d~~~~~~~l~~~-~--~--~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~ 50 (52)
+.-|.-.++.++..+ + . -|+.++|+|.||.++...|---|..+.++.
T Consensus 162 qAiD~INAl~~l~k~~~~~~~~lp~I~~G~s~G~yla~l~~k~aP~~~~~~i 213 (403)
T PF11144_consen 162 QAIDIINALLDLKKIFPKNGGGLPKIYIGSSHGGYLAHLCAKIAPWLFDGVI 213 (403)
T ss_pred HHHHHHHHHHHHHHhhhcccCCCcEEEEecCcHHHHHHHHHhhCccceeEEE
Confidence 345666677676665 2 2 488999999999999999987888776653
No 186
>COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]
Probab=96.37 E-value=0.027 Score=30.98 Aligned_cols=29 Identities=14% Similarity=0.142 Sum_probs=22.6
Q ss_pred CCcEEEEEEchHHHHHHHHHhhcCCceeE
Q 038643 20 SKKVGMVGYCMGSALTIACSASLMERKHT 48 (52)
Q Consensus 20 ~~~i~l~G~S~GG~~a~~~a~~~p~~~~~ 48 (52)
.+++++++||+|..++..++.+....+++
T Consensus 58 ~~~~vlVAHSLGc~~v~h~~~~~~~~V~G 86 (181)
T COG3545 58 EGPVVLVAHSLGCATVAHWAEHIQRQVAG 86 (181)
T ss_pred CCCeEEEEecccHHHHHHHHHhhhhccce
Confidence 45699999999999999999765444443
No 187
>COG5153 CVT17 Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking and secretion / Lipid metabolism]
Probab=96.33 E-value=0.015 Score=34.70 Aligned_cols=24 Identities=13% Similarity=0.281 Sum_probs=20.6
Q ss_pred CCCcEEEEEEchHHHHHHHHHhhc
Q 038643 19 GSKKVGMVGYCMGSALTIACSASL 42 (52)
Q Consensus 19 ~~~~i~l~G~S~GG~~a~~~a~~~ 42 (52)
+..+|.+.|||+||.+|..+..++
T Consensus 274 pda~iwlTGHSLGGa~AsLlG~~f 297 (425)
T COG5153 274 PDARIWLTGHSLGGAIASLLGIRF 297 (425)
T ss_pred CCceEEEeccccchHHHHHhcccc
Confidence 467899999999999999887654
No 188
>KOG4540 consensus Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking, secretion, and vesicular transport; Lipid transport and metabolism]
Probab=96.33 E-value=0.015 Score=34.70 Aligned_cols=24 Identities=13% Similarity=0.281 Sum_probs=20.6
Q ss_pred CCCcEEEEEEchHHHHHHHHHhhc
Q 038643 19 GSKKVGMVGYCMGSALTIACSASL 42 (52)
Q Consensus 19 ~~~~i~l~G~S~GG~~a~~~a~~~ 42 (52)
+..+|.+.|||+||.+|..+..++
T Consensus 274 pda~iwlTGHSLGGa~AsLlG~~f 297 (425)
T KOG4540|consen 274 PDARIWLTGHSLGGAIASLLGIRF 297 (425)
T ss_pred CCceEEEeccccchHHHHHhcccc
Confidence 467899999999999999887654
No 189
>KOG1516 consensus Carboxylesterase and related proteins [General function prediction only]
Probab=96.23 E-value=0.013 Score=35.91 Aligned_cols=36 Identities=25% Similarity=0.386 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhc------CCCcEEEEEEchHHHHHHHHHh
Q 038643 5 VADISASVDWLKAN------GSKKVGMVGYCMGSALTIACSA 40 (52)
Q Consensus 5 ~~d~~~~~~~l~~~------~~~~i~l~G~S~GG~~a~~~a~ 40 (52)
.-|...+++|+++. .+++|.++|||-||..+..+..
T Consensus 173 l~Dq~~AL~wv~~~I~~FGGdp~~vTl~G~saGa~~v~~l~~ 214 (545)
T KOG1516|consen 173 LFDQLLALRWVKDNIPSFGGDPKNVTLFGHSAGAASVSLLTL 214 (545)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCeEEEEeechhHHHHHHHhc
Confidence 45888999999887 1789999999999999877663
No 190
>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases. Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B.
Probab=96.19 E-value=0.026 Score=32.86 Aligned_cols=39 Identities=18% Similarity=0.469 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHHHhcCCCcEEEEEEchHHHHHHHHHhh
Q 038643 3 GVVADISASVDWLKANGSKKVGMVGYCMGSALTIACSAS 41 (52)
Q Consensus 3 ~~~~d~~~~~~~l~~~~~~~i~l~G~S~GG~~a~~~a~~ 41 (52)
...+|+..+++|+++++..+++++.-|+.|.+|...+++
T Consensus 83 ~g~~sL~~V~dwl~~~g~~~~GLIAaSLSaRIAy~Va~~ 121 (294)
T PF02273_consen 83 IGKASLLTVIDWLATRGIRRIGLIAASLSARIAYEVAAD 121 (294)
T ss_dssp HHHHHHHHHHHHHHHTT---EEEEEETTHHHHHHHHTTT
T ss_pred HhHHHHHHHHHHHHhcCCCcchhhhhhhhHHHHHHHhhc
Confidence 346789999999998888999999999999999999974
No 191
>COG3150 Predicted esterase [General function prediction only]
Probab=96.18 E-value=0.014 Score=32.18 Aligned_cols=23 Identities=13% Similarity=0.050 Sum_probs=19.8
Q ss_pred CCcEEEEEEchHHHHHHHHHhhc
Q 038643 20 SKKVGMVGYCMGSALTIACSASL 42 (52)
Q Consensus 20 ~~~i~l~G~S~GG~~a~~~a~~~ 42 (52)
.+...++|-|+||..+..++.+.
T Consensus 58 ~~~p~ivGssLGGY~At~l~~~~ 80 (191)
T COG3150 58 DESPLIVGSSLGGYYATWLGFLC 80 (191)
T ss_pred CCCceEEeecchHHHHHHHHHHh
Confidence 35589999999999999999765
No 192
>PF05277 DUF726: Protein of unknown function (DUF726); InterPro: IPR007941 This family consists of several uncharacterised eukaryotic proteins.
Probab=96.14 E-value=0.023 Score=33.93 Aligned_cols=31 Identities=29% Similarity=0.498 Sum_probs=22.5
Q ss_pred HHHHhc--CCCcEEEEEEchHHHHHHHHHhhcC
Q 038643 13 DWLKAN--GSKKVGMVGYCMGSALTIACSASLM 43 (52)
Q Consensus 13 ~~l~~~--~~~~i~l~G~S~GG~~a~~~a~~~p 43 (52)
+.|.++ +..+|.++|||+|+.+........+
T Consensus 210 ~~L~~~~~G~RpVtLvG~SLGarvI~~cL~~L~ 242 (345)
T PF05277_consen 210 DALLSRNQGERPVTLVGHSLGARVIYYCLLELA 242 (345)
T ss_pred HHHHHhcCCCCceEEEeecccHHHHHHHHHHHH
Confidence 444444 4568999999999999877765443
No 193
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]
Probab=96.09 E-value=0.0097 Score=36.50 Aligned_cols=33 Identities=27% Similarity=0.598 Sum_probs=28.4
Q ss_pred hhHHHHHHHHHHHHHhc-CCCcEEEEEEchHHHH
Q 038643 2 VGVVADISASVDWLKAN-GSKKVGMVGYCMGSAL 34 (52)
Q Consensus 2 ~~~~~d~~~~~~~l~~~-~~~~i~l~G~S~GG~~ 34 (52)
|+...|+..++++...+ +..++.++|+|+|+-+
T Consensus 306 e~~a~Dl~r~i~~y~~~w~~~~~~liGySfGADv 339 (456)
T COG3946 306 EQIAADLSRLIRFYARRWGAKRVLLIGYSFGADV 339 (456)
T ss_pred HHHHHHHHHHHHHHHHhhCcceEEEEeecccchh
Confidence 56789999999988876 5789999999999965
No 194
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=96.05 E-value=0.016 Score=34.43 Aligned_cols=39 Identities=18% Similarity=0.305 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHHhc-------CCCcEEEEEEchHHHHHHHHHhh
Q 038643 3 GVVADISASVDWLKAN-------GSKKVGMVGYCMGSALTIACSAS 41 (52)
Q Consensus 3 ~~~~d~~~~~~~l~~~-------~~~~i~l~G~S~GG~~a~~~a~~ 41 (52)
...+|.-.+++|+.++ ..+++++.|=|-||.+|..++.+
T Consensus 141 a~y~D~~~Al~w~~~~~~~~~~~D~~rv~l~GDSaGGNia~~va~r 186 (336)
T KOG1515|consen 141 AAYDDGWAALKWVLKNSWLKLGADPSRVFLAGDSAGGNIAHVVAQR 186 (336)
T ss_pred ccchHHHHHHHHHHHhHHHHhCCCcccEEEEccCccHHHHHHHHHH
Confidence 4678888999988875 26889999999999999998865
No 195
>PF04301 DUF452: Protein of unknown function (DUF452); InterPro: IPR007398 This is a family of uncharacterised proteins.
Probab=95.96 E-value=0.016 Score=32.48 Aligned_cols=32 Identities=16% Similarity=0.237 Sum_probs=24.7
Q ss_pred CCcEEEEEEchHHHHHHHHHhhcCCceeEeeeC
Q 038643 20 SKKVGMVGYCMGSALTIACSASLMERKHTFRMN 52 (52)
Q Consensus 20 ~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~~~ 52 (52)
.++|.+++||||-.+|..+.... +...++.+|
T Consensus 56 y~~i~lvAWSmGVw~A~~~l~~~-~~~~aiAIN 87 (213)
T PF04301_consen 56 YREIYLVAWSMGVWAANRVLQGI-PFKRAIAIN 87 (213)
T ss_pred CceEEEEEEeHHHHHHHHHhccC-CcceeEEEE
Confidence 57899999999999988876543 456666665
No 196
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=95.90 E-value=0.017 Score=33.36 Aligned_cols=21 Identities=24% Similarity=0.471 Sum_probs=17.3
Q ss_pred CCcEEEEEEchHHHHHHHHHh
Q 038643 20 SKKVGMVGYCMGSALTIACSA 40 (52)
Q Consensus 20 ~~~i~l~G~S~GG~~a~~~a~ 40 (52)
..++.++|||-||.-++..+.
T Consensus 70 ~~~v~l~GySqGG~Aa~~AA~ 90 (290)
T PF03583_consen 70 SSRVALWGYSQGGQAALWAAE 90 (290)
T ss_pred CCCEEEEeeCccHHHHHHHHH
Confidence 368999999999998876653
No 197
>COG3673 Uncharacterized conserved protein [Function unknown]
Probab=95.83 E-value=0.04 Score=33.29 Aligned_cols=39 Identities=18% Similarity=0.290 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHHHhc--CCCcEEEEEEchHHHHHHHHHhh
Q 038643 3 GVVADISASVDWLKAN--GSKKVGMVGYCMGSALTIACSAS 41 (52)
Q Consensus 3 ~~~~d~~~~~~~l~~~--~~~~i~l~G~S~GG~~a~~~a~~ 41 (52)
+..+.++.+..||-.. +.++|.++|+|-|++.+-.+|..
T Consensus 102 gL~~nI~~AYrFL~~~yepGD~Iy~FGFSRGAf~aRVlagm 142 (423)
T COG3673 102 GLVQNIREAYRFLIFNYEPGDEIYAFGFSRGAFSARVLAGM 142 (423)
T ss_pred HHHHHHHHHHHHHHHhcCCCCeEEEeeccchhHHHHHHHHH
Confidence 3467889999998876 47899999999999998888753
No 198
>KOG3975 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.81 E-value=0.031 Score=32.61 Aligned_cols=35 Identities=11% Similarity=0.360 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhc-C-CCcEEEEEEchHHHHHHHHHh
Q 038643 6 ADISASVDWLKAN-G-SKKVGMVGYCMGSALTIACSA 40 (52)
Q Consensus 6 ~d~~~~~~~l~~~-~-~~~i~l~G~S~GG~~a~~~a~ 40 (52)
+.++--++++++. + ..|+.++|||-|+.+.+.+.-
T Consensus 93 ~QV~HKlaFik~~~Pk~~ki~iiGHSiGaYm~Lqil~ 129 (301)
T KOG3975|consen 93 DQVDHKLAFIKEYVPKDRKIYIIGHSIGAYMVLQILP 129 (301)
T ss_pred hHHHHHHHHHHHhCCCCCEEEEEecchhHHHHHHHhh
Confidence 4455666777776 3 579999999999999999875
No 199
>PF09994 DUF2235: Uncharacterized alpha/beta hydrolase domain (DUF2235); InterPro: IPR018712 This domain has no known function.
Probab=95.78 E-value=0.034 Score=31.97 Aligned_cols=38 Identities=18% Similarity=0.309 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHhc--CCCcEEEEEEchHHHHHHHHHhh
Q 038643 4 VVADISASVDWLKAN--GSKKVGMVGYCMGSALTIACSAS 41 (52)
Q Consensus 4 ~~~d~~~~~~~l~~~--~~~~i~l~G~S~GG~~a~~~a~~ 41 (52)
..+.+..+..++.+. +.++|.++|+|-|+.+|-.++..
T Consensus 73 ~~~~I~~ay~~l~~~~~~gd~I~lfGFSRGA~~AR~~a~~ 112 (277)
T PF09994_consen 73 IEARIRDAYRFLSKNYEPGDRIYLFGFSRGAYTARAFANM 112 (277)
T ss_pred hHHHHHHHHHHHHhccCCcceEEEEecCccHHHHHHHHHH
Confidence 345677778777555 46889999999999999988854
No 200
>PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A.
Probab=95.75 E-value=0.064 Score=31.37 Aligned_cols=47 Identities=15% Similarity=0.085 Sum_probs=35.8
Q ss_pred hhHHHHHHHHHHHHHhcCCCcEEEEEEchHHHHHHHHHhhcCCceeEeee
Q 038643 2 VGVVADISASVDWLKANGSKKVGMVGYCMGSALTIACSASLMERKHTFRM 51 (52)
Q Consensus 2 ~~~~~d~~~~~~~l~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~~ 51 (52)
++..+++..+++++. .+.+.-+|---|+.+-..+|..+|+++.++.+
T Consensus 83 d~LAe~l~~Vl~~f~---lk~vIg~GvGAGAnIL~rfAl~~p~~V~GLiL 129 (283)
T PF03096_consen 83 DQLAEMLPEVLDHFG---LKSVIGFGVGAGANILARFALKHPERVLGLIL 129 (283)
T ss_dssp HHHHCTHHHHHHHHT------EEEEEETHHHHHHHHHHHHSGGGEEEEEE
T ss_pred HHHHHHHHHHHHhCC---ccEEEEEeeccchhhhhhccccCccceeEEEE
Confidence 345566777777764 56788999999999999999999999887654
No 201
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=95.72 E-value=0.029 Score=34.97 Aligned_cols=38 Identities=21% Similarity=0.375 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHhc------CCCcEEEEEEchHHHHHHHHHhh
Q 038643 4 VVADISASVDWLKAN------GSKKVGMVGYCMGSALTIACSAS 41 (52)
Q Consensus 4 ~~~d~~~~~~~l~~~------~~~~i~l~G~S~GG~~a~~~a~~ 41 (52)
-+.|...+++|+++. .++.|.++|.|-|++.++.+.+.
T Consensus 157 Gl~DqilALkWV~~NIe~FGGDp~NVTl~GeSAGa~si~~Lla~ 200 (491)
T COG2272 157 GLLDQILALKWVRDNIEAFGGDPQNVTLFGESAGAASILTLLAV 200 (491)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCccceEEeeccchHHHHHHhhcC
Confidence 357889999999887 27899999999999988877643
No 202
>PF08237 PE-PPE: PE-PPE domain; InterPro: IPR013228 The human pathogen Mycobacterium tuberculosis harbours a large number of genes that encode proteins whose N-termini contain the characteristic motifs Pro-Glu (PE) or Pro-Pro-Glu (PPE). A subgroup of the PE proteins contains polymorphic GC-rich sequences (PGRS), while a subgroup of the PPE proteins contains major polymorphic tandem repeats (MPTR). The function of most of these proteins remains unknown []. However, the PE_PGRS proteins from Mycobacterium marinum are secreted by components of the ESX-5 system that belongs to the recently defined type VII secretion systems []. It has also been reported that the PE_PGRS family of proteins contains multiple calcium-binding and glycine-rich sequence motifs GGXGXD/NXUX. This sequence repeat constitutes a calcium-binding parallel beta-roll or parallel beta-helix structure and is found in RTX toxins secreted by many Gram-negative bacteria []. This domain is found C-terminal to the PE (IPR000084 from INTERPRO) and PPE (IPR000030 from INTERPRO) domains. The secondary structure of this domain is predicted to be a mixture of alpha helices and beta strands [].
Probab=95.70 E-value=0.082 Score=29.77 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=19.4
Q ss_pred CCCcEEEEEEchHHHHHHHHHhh
Q 038643 19 GSKKVGMVGYCMGSALTIACSAS 41 (52)
Q Consensus 19 ~~~~i~l~G~S~GG~~a~~~a~~ 41 (52)
..+++.++|+|+|+.++.....+
T Consensus 46 ~~~~vvV~GySQGA~Va~~~~~~ 68 (225)
T PF08237_consen 46 AGGPVVVFGYSQGAVVASNVLRR 68 (225)
T ss_pred CCCCEEEEEECHHHHHHHHHHHH
Confidence 35789999999999998887754
No 203
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=95.69 E-value=0.0011 Score=41.95 Aligned_cols=48 Identities=25% Similarity=0.175 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHHHHhcC---CCcEEEEEEchHHHHHHHHHhhcCCceeEee
Q 038643 3 GVVADISASVDWLKANG---SKKVGMVGYCMGSALTIACSASLMERKHTFR 50 (52)
Q Consensus 3 ~~~~d~~~~~~~l~~~~---~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~ 50 (52)
...+|+.++.+.|.+++ ++++++.|-|-||.++-....++|+...++.
T Consensus 479 ~vfdDf~AVaedLi~rgitspe~lgi~GgSNGGLLvg~alTQrPelfgA~v 529 (648)
T COG1505 479 NVFDDFIAVAEDLIKRGITSPEKLGIQGGSNGGLLVGAALTQRPELFGAAV 529 (648)
T ss_pred hhhHHHHHHHHHHHHhCCCCHHHhhhccCCCCceEEEeeeccChhhhCcee
Confidence 46799999999999886 6899999999999999888889999766553
No 204
>KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown]
Probab=95.66 E-value=0.039 Score=32.73 Aligned_cols=47 Identities=15% Similarity=0.097 Sum_probs=37.1
Q ss_pred hhHHHHHHHHHHHHHhcCCCcEEEEEEchHHHHHHHHHhhcCCceeEeee
Q 038643 2 VGVVADISASVDWLKANGSKKVGMVGYCMGSALTIACSASLMERKHTFRM 51 (52)
Q Consensus 2 ~~~~~d~~~~~~~l~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~~ 51 (52)
++..+++..+++++. .+.+.-+|---|+.+-.++|..||+++-++++
T Consensus 106 d~LAd~l~~VL~~f~---lk~vIg~GvGAGAyIL~rFAl~hp~rV~GLvL 152 (326)
T KOG2931|consen 106 DDLADMLPEVLDHFG---LKSVIGMGVGAGAYILARFALNHPERVLGLVL 152 (326)
T ss_pred HHHHHHHHHHHHhcC---cceEEEecccccHHHHHHHHhcChhheeEEEE
Confidence 345666667776653 56788889999999999999999999888654
No 205
>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=95.58 E-value=0.043 Score=30.34 Aligned_cols=24 Identities=17% Similarity=0.199 Sum_probs=20.1
Q ss_pred CCcEEEEEEchHHHHHHHHHhhcC
Q 038643 20 SKKVGMVGYCMGSALTIACSASLM 43 (52)
Q Consensus 20 ~~~i~l~G~S~GG~~a~~~a~~~p 43 (52)
..++++-|+||||.++...+....
T Consensus 88 ~gpLi~GGkSmGGR~aSmvade~~ 111 (213)
T COG3571 88 EGPLIIGGKSMGGRVASMVADELQ 111 (213)
T ss_pred CCceeeccccccchHHHHHHHhhc
Confidence 458999999999999998886643
No 206
>PLN02606 palmitoyl-protein thioesterase
Probab=95.50 E-value=0.12 Score=30.62 Aligned_cols=39 Identities=13% Similarity=0.050 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhcC--CCcEEEEEEchHHHHHHHHHhhcCC
Q 038643 6 ADISASVDWLKANG--SKKVGMVGYCMGSALTIACSASLME 44 (52)
Q Consensus 6 ~d~~~~~~~l~~~~--~~~i~l~G~S~GG~~a~~~a~~~p~ 44 (52)
+.++.+.+.+++.+ ..-+.++|+|.||.+.-.+..+.|+
T Consensus 78 ~Qv~~vce~l~~~~~L~~G~naIGfSQGglflRa~ierc~~ 118 (306)
T PLN02606 78 QQASIACEKIKQMKELSEGYNIVAESQGNLVARGLIEFCDN 118 (306)
T ss_pred HHHHHHHHHHhcchhhcCceEEEEEcchhHHHHHHHHHCCC
Confidence 33444444444432 3568999999999999999988655
No 207
>PLN02633 palmitoyl protein thioesterase family protein
Probab=95.46 E-value=0.11 Score=30.82 Aligned_cols=38 Identities=13% Similarity=0.076 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhcC--CCcEEEEEEchHHHHHHHHHhhcCC
Q 038643 7 DISASVDWLKANG--SKKVGMVGYCMGSALTIACSASLME 44 (52)
Q Consensus 7 d~~~~~~~l~~~~--~~~i~l~G~S~GG~~a~~~a~~~p~ 44 (52)
.++.+.+.+++.+ ..-+.++|||.||.+.-.+..+.|+
T Consensus 78 Qve~vce~l~~~~~l~~G~naIGfSQGGlflRa~ierc~~ 117 (314)
T PLN02633 78 QAEIACEKVKQMKELSQGYNIVGRSQGNLVARGLIEFCDG 117 (314)
T ss_pred HHHHHHHHHhhchhhhCcEEEEEEccchHHHHHHHHHCCC
Confidence 3444444444432 3569999999999999999988665
No 208
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=95.22 E-value=0.08 Score=32.07 Aligned_cols=39 Identities=21% Similarity=0.387 Sum_probs=32.8
Q ss_pred hHHHHHHHHHHHHH-hcCCCcEEEEEEchHHHHHHHHHhh
Q 038643 3 GVVADISASVDWLK-ANGSKKVGMVGYCMGSALTIACSAS 41 (52)
Q Consensus 3 ~~~~d~~~~~~~l~-~~~~~~i~l~G~S~GG~~a~~~a~~ 41 (52)
.++.++.+..++|. +.+.+.|.++|=|-||.+++.+...
T Consensus 176 tQL~qlv~~Y~~Lv~~~G~~nI~LmGDSAGGnL~Ls~Lqy 215 (374)
T PF10340_consen 176 TQLRQLVATYDYLVESEGNKNIILMGDSAGGNLALSFLQY 215 (374)
T ss_pred hHHHHHHHHHHHHHhccCCCeEEEEecCccHHHHHHHHHH
Confidence 46778888888888 5568899999999999999988753
No 209
>PF02089 Palm_thioest: Palmitoyl protein thioesterase; InterPro: IPR002472 Neuronal ceroid lipofuscinoses (NCL) represent a group of encephalopathies that occur in 1 in 12,500 children. Mutations in the palmitoyl protein thioesterase gene causing infantile neuronal ceroid lipofuscinosis []. The most common mutation results in intracellular accumulation of the polypeptide and undetectable enzyme activity in the brain. Direct sequencing of cDNAs derived from brain RNA of INCL patients has shown a mis-sense transversion of A to T at nucleotide position 364, which results in substitution of Trp for Arg at position 122 in the protein - Arg 122 is immediately adjacent to a lipase consensus sequence that contains the putative active site Ser of PPT. The occurrence of this and two other independent mutations in the PPT gene strongly suggests that defects in this gene cause INCL.; GO: 0008474 palmitoyl-(protein) hydrolase activity, 0006464 protein modification process; PDB: 3GRO_B 1PJA_A 1EXW_A 1EH5_A 1EI9_A.
Probab=95.11 E-value=0.25 Score=28.91 Aligned_cols=36 Identities=11% Similarity=0.196 Sum_probs=24.4
Q ss_pred HHHHHHHHhcC--CCcEEEEEEchHHHHHHHHHhhcCC
Q 038643 9 SASVDWLKANG--SKKVGMVGYCMGSALTIACSASLME 44 (52)
Q Consensus 9 ~~~~~~l~~~~--~~~i~l~G~S~GG~~a~~~a~~~p~ 44 (52)
+.+.+.+++.+ ..-+.++|+|.||.+.-.++.+.|.
T Consensus 66 ~~vc~~l~~~p~L~~G~~~IGfSQGgl~lRa~vq~c~~ 103 (279)
T PF02089_consen 66 EQVCEQLANDPELANGFNAIGFSQGGLFLRAYVQRCND 103 (279)
T ss_dssp HHHHHHHHH-GGGTT-EEEEEETCHHHHHHHHHHH-TS
T ss_pred HHHHHHHhhChhhhcceeeeeeccccHHHHHHHHHCCC
Confidence 33444444433 4679999999999999999988654
No 210
>KOG2029 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.77 E-value=0.07 Score=34.33 Aligned_cols=31 Identities=23% Similarity=0.350 Sum_probs=21.8
Q ss_pred HHHHHHHHhcC---CCcEEEEEEchHHHHHHHHH
Q 038643 9 SASVDWLKANG---SKKVGMVGYCMGSALTIACS 39 (52)
Q Consensus 9 ~~~~~~l~~~~---~~~i~l~G~S~GG~~a~~~a 39 (52)
..+++.+++.. ..+|..+||||||.++=.+.
T Consensus 511 ~~lleql~~~~VG~~RPivwI~HSmGGLl~K~lL 544 (697)
T KOG2029|consen 511 NELLEQLQAAGVGDDRPIVWIGHSMGGLLAKKLL 544 (697)
T ss_pred HHHHHHHHHhccCCCCceEEEecccchHHHHHHH
Confidence 34555555543 56899999999998876554
No 211
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=94.54 E-value=0.092 Score=30.44 Aligned_cols=38 Identities=21% Similarity=0.257 Sum_probs=30.2
Q ss_pred hhHHHHHHHHHHHHHhcC-CCcEEEEEEchHHHHHHHHH
Q 038643 2 VGVVADISASVDWLKANG-SKKVGMVGYCMGSALTIACS 39 (52)
Q Consensus 2 ~~~~~d~~~~~~~l~~~~-~~~i~l~G~S~GG~~a~~~a 39 (52)
....+|+..+++++...+ ..+|+++|||-|..=.+++.
T Consensus 87 k~D~edl~~l~~Hi~~~~fSt~vVL~GhSTGcQdi~yYl 125 (299)
T KOG4840|consen 87 KDDVEDLKCLLEHIQLCGFSTDVVLVGHSTGCQDIMYYL 125 (299)
T ss_pred cccHHHHHHHHHHhhccCcccceEEEecCccchHHHHHH
Confidence 345788889998876653 45899999999998777776
No 212
>KOG2541 consensus Palmitoyl protein thioesterase [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=94.54 E-value=0.23 Score=29.26 Aligned_cols=38 Identities=18% Similarity=0.221 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhcC--CCcEEEEEEchHHHHHHHHHhhc
Q 038643 5 VADISASVDWLKANG--SKKVGMVGYCMGSALTIACSASL 42 (52)
Q Consensus 5 ~~d~~~~~~~l~~~~--~~~i~l~G~S~GG~~a~~~a~~~ 42 (52)
.+.+..+.+.+++.+ .+-+.++|+|.||.++-.++..-
T Consensus 74 ~~Qv~~~ce~v~~m~~lsqGynivg~SQGglv~Raliq~c 113 (296)
T KOG2541|consen 74 WEQVDVACEKVKQMPELSQGYNIVGYSQGGLVARALIQFC 113 (296)
T ss_pred HHHHHHHHHHHhcchhccCceEEEEEccccHHHHHHHHhC
Confidence 344555555555443 57789999999999999888663
No 213
>KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=94.17 E-value=0.19 Score=31.67 Aligned_cols=47 Identities=15% Similarity=0.068 Sum_probs=39.6
Q ss_pred hhHHHHHHHHHHHHHhcC----CCcEEEEEEchHHHHHHHHHhhcCCceeE
Q 038643 2 VGVVADISASVDWLKANG----SKKVGMVGYCMGSALTIACSASLMERKHT 48 (52)
Q Consensus 2 ~~~~~d~~~~~~~l~~~~----~~~i~l~G~S~GG~~a~~~a~~~p~~~~~ 48 (52)
++.+.|+..+++.+..+. ..+.+.+|-|.-|.++..+=.++|+.+.+
T Consensus 149 ~QALaDla~fI~~~n~k~n~~~~~~WitFGgSYsGsLsAW~R~~yPel~~G 199 (514)
T KOG2182|consen 149 LQALADLAEFIKAMNAKFNFSDDSKWITFGGSYSGSLSAWFREKYPELTVG 199 (514)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCeEEECCCchhHHHHHHHHhCchhhee
Confidence 467899999999988773 24899999999999999999999997544
No 214
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=93.83 E-value=0.39 Score=28.28 Aligned_cols=39 Identities=13% Similarity=0.157 Sum_probs=26.4
Q ss_pred hHHHHHHHHH-HHHHhcC---CCcEEEEEEchHHHHHHHHHhh
Q 038643 3 GVVADISASV-DWLKANG---SKKVGMVGYCMGSALTIACSAS 41 (52)
Q Consensus 3 ~~~~d~~~~~-~~l~~~~---~~~i~l~G~S~GG~~a~~~a~~ 41 (52)
+..+|+..++ +|+...+ ..++.|.|-|.||..+-.+|.+
T Consensus 114 ~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP~~a~~ 156 (415)
T PF00450_consen 114 QAAEDLYEFLQQFFQKFPEYRSNPLYIAGESYGGHYVPALASY 156 (415)
T ss_dssp HHHHHHHHHHHHHHHHSGGGTTSEEEEEEETTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhhccCCCEEEEccccccccchhhHHh
Confidence 3455555555 4444443 4589999999999987777643
No 215
>PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella. Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily.
Probab=93.64 E-value=0.41 Score=28.98 Aligned_cols=47 Identities=19% Similarity=0.111 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhc---CCCcEEEEEEchHHHHHHHHHhhcCCceeEeee
Q 038643 5 VADISASVDWLKAN---GSKKVGMVGYCMGSALTIACSASLMERKHTFRM 51 (52)
Q Consensus 5 ~~d~~~~~~~l~~~---~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~~ 51 (52)
++-++.+-+++++. ..+++++.|.|-=|..++..|+.+|+.++.+|+
T Consensus 153 vrAMD~vq~~~~~~~~~~i~~FvV~GaSKRGWTtWltaa~D~RV~aivP~ 202 (367)
T PF10142_consen 153 VRAMDAVQEFLKKKFGVNIEKFVVTGASKRGWTTWLTAAVDPRVKAIVPI 202 (367)
T ss_pred HHHHHHHHHHHHhhcCCCccEEEEeCCchHhHHHHHhhccCcceeEEeeE
Confidence 34455555666665 378999999999999999999988877777765
No 216
>smart00827 PKS_AT Acyl transferase domain in polyketide synthase (PKS) enzymes.
Probab=93.41 E-value=0.21 Score=28.38 Aligned_cols=29 Identities=14% Similarity=0.234 Sum_probs=21.7
Q ss_pred HHHHHhcCCCcEEEEEEchHHHHHHHHHh
Q 038643 12 VDWLKANGSKKVGMVGYCMGSALTIACSA 40 (52)
Q Consensus 12 ~~~l~~~~~~~i~l~G~S~GG~~a~~~a~ 40 (52)
.+.+++.+..+-.++|||+|=..++.++.
T Consensus 73 ~~~l~~~Gi~p~~~~GhSlGE~aA~~~ag 101 (298)
T smart00827 73 ARLWRSWGVRPDAVVGHSLGEIAAAYVAG 101 (298)
T ss_pred HHHHHHcCCcccEEEecCHHHHHHHHHhC
Confidence 34555555566789999999998888764
No 217
>PF00698 Acyl_transf_1: Acyl transferase domain; InterPro: IPR014043 Enzymes like bacterial malonyl CoA-acly carrier protein transacylase (2.3.1.39 from EC) and eukaryotic fatty acid synthase (2.3.1.85 from EC) that are involved in fatty acid biosynthesis belong to this group. Also included are the polyketide synthases 6-methylsalicylic acid synthase (2.3.1 from EC), a multifunctional enzyme that involved in the biosynthesis of patulin and conidial green pigment synthase (2.3.1 from EC).; PDB: 3HHD_C 2JFD_D 2JFK_A 3G87_A 3IM9_A 2QO3_B 3IM8_A 3EZO_A 2QJ3_A 2QC3_A ....
Probab=93.39 E-value=0.1 Score=30.24 Aligned_cols=30 Identities=17% Similarity=0.304 Sum_probs=22.9
Q ss_pred HHHHHHhcCCCcEEEEEEchHHHHHHHHHh
Q 038643 11 SVDWLKANGSKKVGMVGYCMGSALTIACSA 40 (52)
Q Consensus 11 ~~~~l~~~~~~~i~l~G~S~GG~~a~~~a~ 40 (52)
..+.+++.+..+-.++|||+|=..|+..+.
T Consensus 74 l~~~l~~~Gi~P~~v~GhSlGE~aA~~aaG 103 (318)
T PF00698_consen 74 LARLLRSWGIKPDAVIGHSLGEYAALVAAG 103 (318)
T ss_dssp HHHHHHHTTHCESEEEESTTHHHHHHHHTT
T ss_pred hhhhhcccccccceeeccchhhHHHHHHCC
Confidence 346666666667789999999998887764
No 218
>cd07198 Patatin Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes PNPLA (1-9), TGL (3-5), ExoU-like, and SDP1-like subfamilies. There are some additional hypothetical proteins included in this family.
Probab=93.29 E-value=0.29 Score=25.98 Aligned_cols=34 Identities=12% Similarity=0.089 Sum_probs=26.0
Q ss_pred HHHHHHHhcCCCcEEEEEEchHHHHHHHHHhhcC
Q 038643 10 ASVDWLKANGSKKVGMVGYCMGSALTIACSASLM 43 (52)
Q Consensus 10 ~~~~~l~~~~~~~i~l~G~S~GG~~a~~~a~~~p 43 (52)
.+++.|.+++...-.+.|-|.|+.++..++...+
T Consensus 15 Gvl~aL~e~gi~~d~v~GtSaGAi~aa~~a~g~~ 48 (172)
T cd07198 15 GVAKALRERGPLIDIIAGTSAGAIVAALLASGRD 48 (172)
T ss_pred HHHHHHHHcCCCCCEEEEECHHHHHHHHHHcCCC
Confidence 4567777766555578999999999999987543
No 219
>cd07225 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domain containing protein 6 and protein 7. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are 60% identical to each other. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologous to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and pancreatic tissue. NRE
Probab=93.23 E-value=0.27 Score=28.85 Aligned_cols=33 Identities=12% Similarity=0.101 Sum_probs=25.2
Q ss_pred HHHHHHHhcCCCcEEEEEEchHHHHHHHHHhhc
Q 038643 10 ASVDWLKANGSKKVGMVGYCMGSALTIACSASL 42 (52)
Q Consensus 10 ~~~~~l~~~~~~~i~l~G~S~GG~~a~~~a~~~ 42 (52)
.+++.|.+++...=.+.|.|+|+.++..+++..
T Consensus 32 GvL~aLee~gi~~d~v~GtSaGAi~ga~ya~g~ 64 (306)
T cd07225 32 GVIKALEEAGIPVDMVGGTSIGAFIGALYAEER 64 (306)
T ss_pred HHHHHHHHcCCCCCEEEEECHHHHHHHHHHcCC
Confidence 356777777644446889999999999998763
No 220
>cd07207 Pat_ExoU_VipD_like ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2. ExoU, a 74-kDa enzyme, is a potent virulence factor of Pseudomonas aeruginosa. One of the pathogenic mechanisms of P. aeruginosa is to induce cytotoxicity by the injection of effector proteins (e.g. ExoU) using the type III secretion (T3S) system. ExoU is homologus to patatin and also has the conserved catalytic residues of mammalian calcium-independent (iPLA2) and cytosolic (cPLA2) PLA2. In vitro, ExoU cytotoxity is blocked by the inhibitor of cytosolic and Ca2-independent phospholipase A2 (cPLA2 and iPLA2) enzymes, suggesting that phospholipase A2 inhibitors may represent a novel mode of treatment for acute P. aeruginosa infections. ExoU requires eukaryotic superoxide dismutase as a cofactor and cleaves phosphatidylcholine and phosphatidylethanolamine in vitro. VipD, a 69-kDa cytosolic protein, belongs to the members of Legionella pneumophila family and is homologus to ExoU from Pseudomona
Probab=93.19 E-value=0.34 Score=25.93 Aligned_cols=33 Identities=15% Similarity=0.176 Sum_probs=24.9
Q ss_pred HHHHHHHhcCCCcEEEEEEchHHHHHHHHHhhc
Q 038643 10 ASVDWLKANGSKKVGMVGYCMGSALTIACSASL 42 (52)
Q Consensus 10 ~~~~~l~~~~~~~i~l~G~S~GG~~a~~~a~~~ 42 (52)
.+++.|+++....=.+.|-|.|+.++..+++..
T Consensus 16 Gvl~~L~e~~~~~d~i~GtSaGai~aa~~a~g~ 48 (194)
T cd07207 16 GALKALEEAGILKKRVAGTSAGAITAALLALGY 48 (194)
T ss_pred HHHHHHHHcCCCcceEEEECHHHHHHHHHHcCC
Confidence 456777776543446899999999999998754
No 221
>PRK10279 hypothetical protein; Provisional
Probab=93.06 E-value=0.27 Score=28.81 Aligned_cols=33 Identities=21% Similarity=0.224 Sum_probs=25.6
Q ss_pred HHHHHHHhcCCCcEEEEEEchHHHHHHHHHhhc
Q 038643 10 ASVDWLKANGSKKVGMVGYCMGSALTIACSASL 42 (52)
Q Consensus 10 ~~~~~l~~~~~~~i~l~G~S~GG~~a~~~a~~~ 42 (52)
.+++.|.+++...-.+.|.|+|+.++..+|+..
T Consensus 22 GVL~aL~E~gi~~d~i~GtS~GAlvga~yA~g~ 54 (300)
T PRK10279 22 GVINALKKVGIEIDIVAGCSIGSLVGAAYACDR 54 (300)
T ss_pred HHHHHHHHcCCCcCEEEEEcHHHHHHHHHHcCC
Confidence 356777777655557899999999999998643
No 222
>PF03283 PAE: Pectinacetylesterase
Probab=93.06 E-value=0.28 Score=29.43 Aligned_cols=34 Identities=29% Similarity=0.315 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhcC---CCcEEEEEEchHHHHHHHHH
Q 038643 6 ADISASVDWLKANG---SKKVGMVGYCMGSALTIACS 39 (52)
Q Consensus 6 ~d~~~~~~~l~~~~---~~~i~l~G~S~GG~~a~~~a 39 (52)
..+++++++|...+ .+++.+.|-|-||.-++..+
T Consensus 138 ~i~~avl~~l~~~gl~~a~~vlltG~SAGG~g~~~~~ 174 (361)
T PF03283_consen 138 RILRAVLDDLLSNGLPNAKQVLLTGCSAGGLGAILHA 174 (361)
T ss_pred HHHHHHHHHHHHhcCcccceEEEeccChHHHHHHHHH
Confidence 45778899988773 68899999999999887765
No 223
>TIGR03131 malonate_mdcH malonate decarboxylase, epsilon subunit. Members of this protein family are the epsilon subunit of malonate decarboxylase. This subunit has malonyl-CoA/dephospho-CoA acyltransferase activity. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. The epsilon subunit is closely related to the malonyl CoA-acyl carrier protein (ACP) transacylase family described by TIGR00128, but acts on an ACP subunit of malonate decarboxylase that has an unusual coenzyme A derivative as its prothetic group.
Probab=92.99 E-value=0.27 Score=28.07 Aligned_cols=28 Identities=18% Similarity=0.213 Sum_probs=21.1
Q ss_pred HHHHhcCCCcEEEEEEchHHHHHHHHHh
Q 038643 13 DWLKANGSKKVGMVGYCMGSALTIACSA 40 (52)
Q Consensus 13 ~~l~~~~~~~i~l~G~S~GG~~a~~~a~ 40 (52)
+.+++.+..+..++|||+|=..+...+.
T Consensus 68 ~~l~~~g~~P~~v~GhS~GE~aAa~~aG 95 (295)
T TIGR03131 68 RALLALLPRPSAVAGYSVGEYAAAVVAG 95 (295)
T ss_pred HHHHhcCCCCcEEeecCHHHHHHHHHhC
Confidence 4445555667789999999988887764
No 224
>TIGR03712 acc_sec_asp2 accessory Sec system protein Asp2. This protein is designated Asp2 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=92.95 E-value=0.16 Score=31.91 Aligned_cols=36 Identities=22% Similarity=0.310 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEEchHHHHHHHHHhhc
Q 038643 6 ADISASVDWLKANGSKKVGMVGYCMGSALTIACSASL 42 (52)
Q Consensus 6 ~d~~~~~~~l~~~~~~~i~l~G~S~GG~~a~~~a~~~ 42 (52)
+-+...+++|.= ..+.+++-|.|||..-|+++++..
T Consensus 343 ~~I~~~L~~LgF-~~~qLILSGlSMGTfgAlYYga~l 378 (511)
T TIGR03712 343 NVIQEKLDYLGF-DHDQLILSGLSMGTFGALYYGAKL 378 (511)
T ss_pred HHHHHHHHHhCC-CHHHeeeccccccchhhhhhcccC
Confidence 334444444421 257899999999999999999874
No 225
>KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=92.92 E-value=0.2 Score=30.90 Aligned_cols=42 Identities=17% Similarity=0.071 Sum_probs=33.9
Q ss_pred HHHHHHhcCCCcEEEEEEchHHHHHHHHHhhcCCceeEeeeC
Q 038643 11 SVDWLKANGSKKVGMVGYCMGSALTIACSASLMERKHTFRMN 52 (52)
Q Consensus 11 ~~~~l~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~~~ 52 (52)
+.+.+.+.+..+..+-|-.||+.++..+|..+|+.+.++-.|
T Consensus 219 mrkLMlRLg~nkffiqGgDwGSiI~snlasLyPenV~GlHln 260 (469)
T KOG2565|consen 219 MRKLMLRLGYNKFFIQGGDWGSIIGSNLASLYPENVLGLHLN 260 (469)
T ss_pred HHHHHHHhCcceeEeecCchHHHHHHHHHhhcchhhhHhhhc
Confidence 335555567899999999999999999999999988765433
No 226
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=92.85 E-value=0.56 Score=22.63 Aligned_cols=39 Identities=23% Similarity=0.475 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHhcC----CCcEEEEEEchHHHHHHHHHhhc
Q 038643 4 VVADISASVDWLKANG----SKKVGMVGYCMGSALTIACSASL 42 (52)
Q Consensus 4 ~~~d~~~~~~~l~~~~----~~~i~l~G~S~GG~~a~~~a~~~ 42 (52)
-.+.+...++|+++++ ++++-++|-|-|=.++.+++..+
T Consensus 19 C~~~V~~qI~yvk~~~~~~GpK~VLViGaStGyGLAsRIa~aF 61 (78)
T PF12242_consen 19 CARNVENQIEYVKSQGKINGPKKVLVIGASTGYGLASRIAAAF 61 (78)
T ss_dssp HHHHHHHHHHHHHHC---TS-SEEEEES-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCceEEEEecCCcccHHHHHHHHh
Confidence 3467888899998863 68899999999988887777664
No 227
>cd07210 Pat_hypo_W_succinogenes_WS1459_like Hypothetical patatin similar to WS1459 of Wolinella succinogenes. Patatin-like phospholipase. This family predominantly consists of bacterial patatin glycoproteins. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=92.81 E-value=0.41 Score=26.71 Aligned_cols=33 Identities=12% Similarity=0.119 Sum_probs=24.8
Q ss_pred HHHHHHHhcCCCcEEEEEEchHHHHHHHHHhhc
Q 038643 10 ASVDWLKANGSKKVGMVGYCMGSALTIACSASL 42 (52)
Q Consensus 10 ~~~~~l~~~~~~~i~l~G~S~GG~~a~~~a~~~ 42 (52)
.+++.|.+++.+.-.+.|-|.|+.++..+++..
T Consensus 17 GvL~aL~e~gi~~~~i~GtSaGAi~aa~~a~g~ 49 (221)
T cd07210 17 GFLAALLEMGLEPSAISGTSAGALVGGLFASGI 49 (221)
T ss_pred HHHHHHHHcCCCceEEEEeCHHHHHHHHHHcCC
Confidence 356777666544446899999999999998654
No 228
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=91.89 E-value=0.6 Score=28.96 Aligned_cols=31 Identities=13% Similarity=0.060 Sum_probs=26.7
Q ss_pred CCcEEEEEEchHHHHHHHHHhhcCCceeEee
Q 038643 20 SKKVGMVGYCMGSALTIACSASLMERKHTFR 50 (52)
Q Consensus 20 ~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~ 50 (52)
+++-...|.|-||.-++..|.++|+...++.
T Consensus 114 p~~sY~~GcS~GGRqgl~~AQryP~dfDGIl 144 (474)
T PF07519_consen 114 PKYSYFSGCSTGGRQGLMAAQRYPEDFDGIL 144 (474)
T ss_pred CCceEEEEeCCCcchHHHHHHhChhhcCeEE
Confidence 6778899999999999999999998655543
No 229
>cd07209 Pat_hypo_Ecoli_Z1214_like Hypothetical patatin similar to Z1214 protein of Escherichia coli. Patatin-like phospholipase similar to Z1214 protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=91.74 E-value=0.55 Score=25.95 Aligned_cols=34 Identities=12% Similarity=0.038 Sum_probs=25.7
Q ss_pred HHHHHHHhcCCCcEEEEEEchHHHHHHHHHhhcC
Q 038643 10 ASVDWLKANGSKKVGMVGYCMGSALTIACSASLM 43 (52)
Q Consensus 10 ~~~~~l~~~~~~~i~l~G~S~GG~~a~~~a~~~p 43 (52)
.+++.|.+.+...=.+.|.|.|+..+..+++..+
T Consensus 15 Gvl~aL~e~g~~~d~i~GtS~GAl~aa~~a~~~~ 48 (215)
T cd07209 15 GVLKALAEAGIEPDIISGTSIGAINGALIAGGDP 48 (215)
T ss_pred HHHHHHHHcCCCCCEEEEECHHHHHHHHHHcCCc
Confidence 3566777765444468999999999999997764
No 230
>KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism]
Probab=91.57 E-value=0.36 Score=27.60 Aligned_cols=32 Identities=28% Similarity=0.532 Sum_probs=24.0
Q ss_pred HHHHHHHHHhcCCCcEEEEEEchHHHHHHHHHh
Q 038643 8 ISASVDWLKANGSKKVGMVGYCMGSALTIACSA 40 (52)
Q Consensus 8 ~~~~~~~l~~~~~~~i~l~G~S~GG~~a~~~a~ 40 (52)
+..+.+|++++++ -=+++|+|.|+.++..++.
T Consensus 92 l~yl~~~i~enGP-FDGllGFSQGA~laa~l~~ 123 (230)
T KOG2551|consen 92 LEYLEDYIKENGP-FDGLLGFSQGAALAALLAG 123 (230)
T ss_pred HHHHHHHHHHhCC-CccccccchhHHHHHHhhc
Confidence 5555677776642 2279999999999999887
No 231
>cd07228 Pat_NTE_like_bacteria Bacterial patatin-like phospholipase domain containing protein 6. Bacterial patatin-like phospholipase domain containing protein 6. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This group includes YCHK and rssA from Escherichia coli as well as Ylbk from Bacillus amyloliquefaciens.
Probab=91.55 E-value=0.7 Score=24.63 Aligned_cols=34 Identities=15% Similarity=0.192 Sum_probs=25.1
Q ss_pred HHHHHHHhcCCCcEEEEEEchHHHHHHHHHhhcC
Q 038643 10 ASVDWLKANGSKKVGMVGYCMGSALTIACSASLM 43 (52)
Q Consensus 10 ~~~~~l~~~~~~~i~l~G~S~GG~~a~~~a~~~p 43 (52)
.+++.++++....=.+.|-|.|+.++..++...+
T Consensus 17 Gvl~~L~e~g~~~d~i~GtSaGAi~aa~~a~g~~ 50 (175)
T cd07228 17 GVLRALEEEGIEIDIIAGSSIGALVGALYAAGHL 50 (175)
T ss_pred HHHHHHHHCCCCeeEEEEeCHHHHHHHHHHcCCC
Confidence 3566777665444468999999999999987643
No 232
>cd07227 Pat_Fungal_NTE1 Fungal patatin-like phospholipase domain containing protein 6. These are fungal Neuropathy Target Esterase (NTE), commonly referred to as NTE1. Patatin-like phospholipase. NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This family includes NTE1 from fungi.
Probab=91.43 E-value=0.63 Score=26.94 Aligned_cols=32 Identities=16% Similarity=0.113 Sum_probs=24.4
Q ss_pred HHHHHHHhcCCCcEEEEEEchHHHHHHHHHhh
Q 038643 10 ASVDWLKANGSKKVGMVGYCMGSALTIACSAS 41 (52)
Q Consensus 10 ~~~~~l~~~~~~~i~l~G~S~GG~~a~~~a~~ 41 (52)
.+++.|.+++..-=.+.|.|+|+.++..++..
T Consensus 27 GVL~aLeE~gi~~d~v~GtSaGAiiga~ya~g 58 (269)
T cd07227 27 GILQALEEAGIPIDAIGGTSIGSFVGGLYARE 58 (269)
T ss_pred HHHHHHHHcCCCccEEEEECHHHHHHHHHHcC
Confidence 35677777754444689999999999999865
No 233
>cd07205 Pat_PNPLA6_PNPLA7_NTE1_like Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are included in this family. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologus to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and panc
Probab=91.40 E-value=0.83 Score=24.19 Aligned_cols=33 Identities=15% Similarity=0.118 Sum_probs=24.6
Q ss_pred HHHHHHHhcCCCcEEEEEEchHHHHHHHHHhhc
Q 038643 10 ASVDWLKANGSKKVGMVGYCMGSALTIACSASL 42 (52)
Q Consensus 10 ~~~~~l~~~~~~~i~l~G~S~GG~~a~~~a~~~ 42 (52)
.++++|+++....=.+.|-|.|+.++..++...
T Consensus 17 Gvl~~L~~~~~~~d~i~GtSaGal~a~~~a~g~ 49 (175)
T cd07205 17 GVLKALEEAGIPIDIVSGTSAGAIVGALYAAGY 49 (175)
T ss_pred HHHHHHHHcCCCeeEEEEECHHHHHHHHHHcCC
Confidence 456777766533446899999999999998653
No 234
>COG1752 RssA Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=91.29 E-value=0.59 Score=27.12 Aligned_cols=32 Identities=16% Similarity=0.197 Sum_probs=25.3
Q ss_pred HHHHHHhcCCCcEEEEEEchHHHHHHHHHhhc
Q 038643 11 SVDWLKANGSKKVGMVGYCMGSALTIACSASL 42 (52)
Q Consensus 11 ~~~~l~~~~~~~i~l~G~S~GG~~a~~~a~~~ 42 (52)
+++-|.+.+.+.-.+.|-|+|+.++..+|+.+
T Consensus 29 Vl~aL~e~gi~~~~iaGtS~GAiva~l~A~g~ 60 (306)
T COG1752 29 VLKALEEAGIPIDVIAGTSAGAIVAALYAAGM 60 (306)
T ss_pred HHHHHHHcCCCccEEEecCHHHHHHHHHHcCC
Confidence 45667666656667899999999999999753
No 235
>TIGR00128 fabD malonyl CoA-acyl carrier protein transacylase. The seed alignment for this family of proteins contains a single member each from a number of bacterial species but also an additional pair of closely related, uncharacterized proteins from B. subtilis, one of which has a long C-terminal extension.
Probab=91.17 E-value=0.53 Score=26.59 Aligned_cols=28 Identities=21% Similarity=0.171 Sum_probs=20.5
Q ss_pred HHHHhcC-CCcEEEEEEchHHHHHHHHHh
Q 038643 13 DWLKANG-SKKVGMVGYCMGSALTIACSA 40 (52)
Q Consensus 13 ~~l~~~~-~~~i~l~G~S~GG~~a~~~a~ 40 (52)
+.+++.+ ..+-.++|||+|=..++.++.
T Consensus 74 ~~l~~~g~i~p~~v~GhS~GE~aAa~~aG 102 (290)
T TIGR00128 74 LKLKEQGGLKPDFAAGHSLGEYSALVAAG 102 (290)
T ss_pred HHHHHcCCCCCCEEeecCHHHHHHHHHhC
Confidence 3344444 567789999999988887764
No 236
>PLN02213 sinapoylglucose-malate O-sinapoyltransferase/ carboxypeptidase
Probab=91.00 E-value=0.93 Score=26.56 Aligned_cols=38 Identities=18% Similarity=0.229 Sum_probs=27.0
Q ss_pred HHHHHHHHH-HHHHhcC---CCcEEEEEEchHHHHHHHHHhh
Q 038643 4 VVADISASV-DWLKANG---SKKVGMVGYCMGSALTIACSAS 41 (52)
Q Consensus 4 ~~~d~~~~~-~~l~~~~---~~~i~l~G~S~GG~~a~~~a~~ 41 (52)
+.+|+..++ +|++..+ ..++.+.|-|.||..+-.+|.+
T Consensus 30 ~a~d~~~fL~~Ff~~~p~~~~~~fyI~GESYaG~YiP~la~~ 71 (319)
T PLN02213 30 EVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQE 71 (319)
T ss_pred HHHHHHHHHHHHHHhCcccccCCeEEEeeccccchHHHHHHH
Confidence 346666665 5555444 5789999999999887777654
No 237
>KOG3967 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.99 E-value=1.1 Score=26.08 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=23.5
Q ss_pred CCcEEEEEEchHHHHHHHHHhhcCCc
Q 038643 20 SKKVGMVGYCMGSALTIACSASLMER 45 (52)
Q Consensus 20 ~~~i~l~G~S~GG~~a~~~a~~~p~~ 45 (52)
.+.+.++.||.||...+.+..++|+.
T Consensus 189 ~~sv~vvahsyGG~~t~~l~~~f~~d 214 (297)
T KOG3967|consen 189 AESVFVVAHSYGGSLTLDLVERFPDD 214 (297)
T ss_pred cceEEEEEeccCChhHHHHHHhcCCc
Confidence 67899999999999999999998864
No 238
>KOG2385 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.74 E-value=0.85 Score=29.29 Aligned_cols=22 Identities=27% Similarity=0.760 Sum_probs=18.5
Q ss_pred CCCcEEEEEEchHHHHHHHHHh
Q 038643 19 GSKKVGMVGYCMGSALTIACSA 40 (52)
Q Consensus 19 ~~~~i~l~G~S~GG~~a~~~a~ 40 (52)
+..+|.++|+|+|+.+......
T Consensus 445 G~RPVTLVGFSLGARvIf~CL~ 466 (633)
T KOG2385|consen 445 GNRPVTLVGFSLGARVIFECLL 466 (633)
T ss_pred CCCceeEeeeccchHHHHHHHH
Confidence 5789999999999999875554
No 239
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=90.44 E-value=0.79 Score=27.12 Aligned_cols=32 Identities=13% Similarity=0.292 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEEchHHHHHHHHH
Q 038643 5 VADISASVDWLKANGSKKVGMVGYCMGSALTIACS 39 (52)
Q Consensus 5 ~~d~~~~~~~l~~~~~~~i~l~G~S~GG~~a~~~a 39 (52)
++++...++|+++. ...++|-|||..+++.+.
T Consensus 121 W~El~~i~~w~~~~---~~s~LgICwGaQa~a~al 152 (302)
T PRK05368 121 WDELKEILDWAKTH---VTSTLFICWAAQAALYHL 152 (302)
T ss_pred HHHHHHHHHHHHHc---CCCEEEEcHHHHHHHHHc
Confidence 56688999999875 356899999999887665
No 240
>COG4947 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.33 E-value=0.2 Score=28.07 Aligned_cols=37 Identities=11% Similarity=-0.007 Sum_probs=27.4
Q ss_pred HHHHHHHhcC-CCcEEEEEEchHHHHHHHHHhhcCCce
Q 038643 10 ASVDWLKANG-SKKVGMVGYCMGSALTIACSASLMERK 46 (52)
Q Consensus 10 ~~~~~l~~~~-~~~i~l~G~S~GG~~a~~~a~~~p~~~ 46 (52)
+.-+|+.++. +.+-.+-|-||||..+..+..++|+..
T Consensus 89 AyerYv~eEalpgs~~~sgcsmGayhA~nfvfrhP~lf 126 (227)
T COG4947 89 AYERYVIEEALPGSTIVSGCSMGAYHAANFVFRHPHLF 126 (227)
T ss_pred HHHHHHHHhhcCCCccccccchhhhhhhhhheeChhHh
Confidence 3345665552 445567899999999999999999853
No 241
>PLN02209 serine carboxypeptidase
Probab=90.06 E-value=0.71 Score=28.42 Aligned_cols=39 Identities=21% Similarity=0.236 Sum_probs=25.6
Q ss_pred hHHHHHHHHH-HHHHhcC---CCcEEEEEEchHHHHHHHHHhh
Q 038643 3 GVVADISASV-DWLKANG---SKKVGMVGYCMGSALTIACSAS 41 (52)
Q Consensus 3 ~~~~d~~~~~-~~l~~~~---~~~i~l~G~S~GG~~a~~~a~~ 41 (52)
+..+|+..++ .|++..+ ..++.+.|-|.||..+-.+|..
T Consensus 145 ~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~~a~~ 187 (437)
T PLN02209 145 SEVKKIHEFLQKWLIKHPQFLSNPFYVVGDSYSGMIVPALVHE 187 (437)
T ss_pred HHHHHHHHHHHHHHHhCccccCCCEEEEecCcCceehHHHHHH
Confidence 3445555555 4444443 3589999999999877766643
No 242
>cd07208 Pat_hypo_Ecoli_yjju_like Hypothetical patatin similar to yjju protein of Escherichia coli. Patatin-like phospholipase similar to yjju protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins, and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=89.89 E-value=1 Score=25.44 Aligned_cols=34 Identities=12% Similarity=0.086 Sum_probs=25.0
Q ss_pred HHHHHHHhcCCC-cEEEEEEchHHHHHHHHHhhcC
Q 038643 10 ASVDWLKANGSK-KVGMVGYCMGSALTIACSASLM 43 (52)
Q Consensus 10 ~~~~~l~~~~~~-~i~l~G~S~GG~~a~~~a~~~p 43 (52)
.+++.+.+.+.. .=.+.|.|.|+.++..+++..+
T Consensus 15 Gvl~al~e~~~~~fd~i~GtSaGAi~a~~~~~g~~ 49 (266)
T cd07208 15 GVLDAFLEAGIRPFDLVIGVSAGALNAASYLSGQR 49 (266)
T ss_pred HHHHHHHHcCCCCCCEEEEECHHHHhHHHHHhCCc
Confidence 456777766533 2368999999999999987654
No 243
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=89.48 E-value=0.37 Score=26.35 Aligned_cols=34 Identities=12% Similarity=0.228 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEchHHHHHHHHHh
Q 038643 4 VVADISASVDWLKANGSKKVGMVGYCMGSALTIACSA 40 (52)
Q Consensus 4 ~~~d~~~~~~~l~~~~~~~i~l~G~S~GG~~a~~~a~ 40 (52)
-++.+...+||.+++. ...+|-|||+..++.+..
T Consensus 83 Yw~El~~i~dwa~~~v---~stl~iCWgaqaal~~~y 116 (175)
T cd03131 83 YWEELTEILDWAKTHV---TSTLFSCWAAMAALYYFY 116 (175)
T ss_pred hHHHHHHHHHHHHHhC---cchHHHHHHHHHHHHHHc
Confidence 3567899999998653 457899999999998874
No 244
>cd07230 Pat_TGL4-5_like Triacylglycerol lipase 4 and 5. TGL4 and TGL5 are triacylglycerol lipases that are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. Tgl4 is a functional ortholog of mammalian adipose TG lipase (ATGL) and is phosphorylated and activated by cyclin-dependent kinase 1 (Cdk1/Cdc28). TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. This family includes TGL4 (STC1) and TGL5 (STC2) from Saccharomyces cerevisiae.
Probab=89.27 E-value=0.77 Score=28.18 Aligned_cols=35 Identities=14% Similarity=0.006 Sum_probs=25.5
Q ss_pred HHHHHHHhcCCCcEEEEEEchHHHHHHHHHhhcCC
Q 038643 10 ASVDWLKANGSKKVGMVGYCMGSALTIACSASLME 44 (52)
Q Consensus 10 ~~~~~l~~~~~~~i~l~G~S~GG~~a~~~a~~~p~ 44 (52)
.+++.|.+++..+=.+.|-|.|+.++..+++..++
T Consensus 90 GVLkaL~E~gl~p~vIsGTSaGAivAal~as~~~e 124 (421)
T cd07230 90 GVLKALFEANLLPRIISGSSAGSIVAAILCTHTDE 124 (421)
T ss_pred HHHHHHHHcCCCCCEEEEECHHHHHHHHHHcCCHH
Confidence 45677766653333689999999999999876543
No 245
>cd07224 Pat_like Patatin-like phospholipase. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of lipid acyl hydrolase, catalysing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.
Probab=89.15 E-value=1.3 Score=24.87 Aligned_cols=34 Identities=18% Similarity=0.231 Sum_probs=25.9
Q ss_pred HHHHHHHhcCCC--cEEEEEEchHHHHHHHHHhhcC
Q 038643 10 ASVDWLKANGSK--KVGMVGYCMGSALTIACSASLM 43 (52)
Q Consensus 10 ~~~~~l~~~~~~--~i~l~G~S~GG~~a~~~a~~~p 43 (52)
.++++|.+++.. .-.+.|-|.|+.++..+++..+
T Consensus 16 GVl~~L~e~gi~~~~~~i~G~SAGAl~aa~~asg~~ 51 (233)
T cd07224 16 GVLSLLIEAGVINETTPLAGASAGSLAAACSASGLS 51 (233)
T ss_pred HHHHHHHHcCCCCCCCEEEEEcHHHHHHHHHHcCCC
Confidence 467888877532 3478999999999999997643
No 246
>cd07212 Pat_PNPLA9 Patatin-like phospholipase domain containing protein 9. PNPLA9 is a Ca-independent phospholipase that catalyzes the hydrolysis of glycerophospholipids at the sn-2 position. PNPLA9 is also known as PLA2G6 (phospholipase A2 group VI) or iPLA2beta. PLA2G6 is stimulated by ATP and inhibited by bromoenol lactone (BEL). In humans, PNPLA9 in expressed ubiquitously and is involved in signal transduction, cell proliferation, and apoptotic cell death. Mutations in human PLA2G6 leads to infantile neuroaxonal dystrophy (INAD) and idiopathic neurodegeneration with brain iron accumulation (NBIA). This family includes PLA2G6 from Homo sapiens and Rattus norvegicus.
Probab=89.12 E-value=1 Score=26.43 Aligned_cols=19 Identities=21% Similarity=0.225 Sum_probs=16.2
Q ss_pred EEEEEchHHHHHHHHHhhc
Q 038643 24 GMVGYCMGSALTIACSASL 42 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~~ 42 (52)
.+.|.|+||.++..++..+
T Consensus 35 ~i~GTStGgiIA~~la~g~ 53 (312)
T cd07212 35 WIAGTSTGGILALALLHGK 53 (312)
T ss_pred EEEeeChHHHHHHHHHcCC
Confidence 4789999999999998643
No 247
>KOG4372 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=88.99 E-value=0.18 Score=30.92 Aligned_cols=18 Identities=22% Similarity=0.409 Sum_probs=15.0
Q ss_pred CCcEEEEEEchHHHHHHH
Q 038643 20 SKKVGMVGYCMGSALTIA 37 (52)
Q Consensus 20 ~~~i~l~G~S~GG~~a~~ 37 (52)
..+|..+|||+||.++..
T Consensus 149 i~kISfvghSLGGLvar~ 166 (405)
T KOG4372|consen 149 IEKISFVGHSLGGLVARY 166 (405)
T ss_pred cceeeeeeeecCCeeeeE
Confidence 479999999999987544
No 248
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=88.92 E-value=0.89 Score=27.96 Aligned_cols=36 Identities=17% Similarity=0.228 Sum_probs=24.7
Q ss_pred HHHHHHH-HHHHhcC---CCcEEEEEEchHHHHHHHHHhh
Q 038643 6 ADISASV-DWLKANG---SKKVGMVGYCMGSALTIACSAS 41 (52)
Q Consensus 6 ~d~~~~~-~~l~~~~---~~~i~l~G~S~GG~~a~~~a~~ 41 (52)
+|+..++ +|++..+ ..++.+.|-|.||..+-.+|.+
T Consensus 146 ~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~la~~ 185 (433)
T PLN03016 146 KRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQE 185 (433)
T ss_pred HHHHHHHHHHHHhChhhcCCCEEEEccCccceehHHHHHH
Confidence 4555554 4554443 4679999999999877776643
No 249
>PF05576 Peptidase_S37: PS-10 peptidase S37; InterPro: IPR008761 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. These group of serine peptidases belong to MEROPS peptidase family S37 (clan SC). The members of this group of secreted peptidases are restricted to bacteria. In Streptomyces lividans the peptidase removes tripeptides from the N terminus of extracellular proteins (tripeptidyl aminopeptidase,Tap) [, ].
Probab=88.62 E-value=0.13 Score=31.81 Aligned_cols=47 Identities=13% Similarity=-0.050 Sum_probs=39.2
Q ss_pred hhHHHHHHHHHHHHHhcCCCcEEEEEEchHHHHHHHHHhhcCCceeE
Q 038643 2 VGVVADISASVDWLKANGSKKVGMVGYCMGSALTIACSASLMERKHT 48 (52)
Q Consensus 2 ~~~~~d~~~~~~~l~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~ 48 (52)
++...|...+++.++..-+.+.+-.|-|-||+.++.+=..+|+.+.+
T Consensus 115 ~QAA~D~Hri~~A~K~iY~~kWISTG~SKGGmTa~y~rrFyP~DVD~ 161 (448)
T PF05576_consen 115 WQAASDQHRIVQAFKPIYPGKWISTGGSKGGMTAVYYRRFYPDDVDG 161 (448)
T ss_pred hHhhHHHHHHHHHHHhhccCCceecCcCCCceeEEEEeeeCCCCCCe
Confidence 46788999999999877667888899999999999988888875543
No 250
>PF04263 TPK_catalytic: Thiamin pyrophosphokinase, catalytic domain; InterPro: IPR007371 Thiamin pyrophosphokinase (TPK, 2.7.6.2 from EC) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [].; GO: 0004788 thiamine diphosphokinase activity, 0005524 ATP binding, 0009229 thiamine diphosphate biosynthetic process; PDB: 2F17_B 1IG3_B 3S4Y_B 2OMK_B 1IG0_A 3MEL_B 3CQ9_A 3LM8_B 3K94_B 3L8M_B ....
Probab=86.09 E-value=0.65 Score=23.90 Aligned_cols=36 Identities=11% Similarity=0.315 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHHHHHhcCCCcEEEEEEchHHHHHHHH
Q 038643 2 VGVVADISASVDWLKANGSKKVGMVGYCMGSALTIAC 38 (52)
Q Consensus 2 ~~~~~d~~~~~~~l~~~~~~~i~l~G~S~GG~~a~~~ 38 (52)
++...|++.+++++.+.+..+|.++| .+||.+=..+
T Consensus 67 ~kD~TD~e~Al~~~~~~~~~~i~v~G-a~GgR~DH~l 102 (123)
T PF04263_consen 67 EKDYTDLEKALEYAIEQGPDEIIVLG-ALGGRFDHTL 102 (123)
T ss_dssp STTS-HHHHHHHHHHHTTTSEEEEES--SSSSHHHHH
T ss_pred ccccCHHHHHHHHHHHCCCCEEEEEe-cCCCcHHHHH
Confidence 34567999999999888888999998 6777664333
No 251
>cd07232 Pat_PLPL Patain-like phospholipase. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants and fungi. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.
Probab=86.04 E-value=1.5 Score=26.86 Aligned_cols=34 Identities=15% Similarity=-0.033 Sum_probs=24.9
Q ss_pred HHHHHHHhcCCCcEEEEEEchHHHHHHHHHhhcC
Q 038643 10 ASVDWLKANGSKKVGMVGYCMGSALTIACSASLM 43 (52)
Q Consensus 10 ~~~~~l~~~~~~~i~l~G~S~GG~~a~~~a~~~p 43 (52)
.+++.|.+++..+=.+.|-|.|+.++..+++..+
T Consensus 84 GVlkaL~e~gllp~iI~GtSAGAivaalla~~t~ 117 (407)
T cd07232 84 GVVKALLDADLLPNVISGTSGGSLVAALLCTRTD 117 (407)
T ss_pred HHHHHHHhCCCCCCEEEEECHHHHHHHHHHcCCH
Confidence 4566777765333358999999999999997543
No 252
>PF14253 AbiH: Bacteriophage abortive infection AbiH
Probab=85.14 E-value=0.98 Score=25.38 Aligned_cols=14 Identities=14% Similarity=0.337 Sum_probs=12.1
Q ss_pred CCcEEEEEEchHHH
Q 038643 20 SKKVGMVGYCMGSA 33 (52)
Q Consensus 20 ~~~i~l~G~S~GG~ 33 (52)
...|.++|||+|..
T Consensus 234 i~~I~i~GhSl~~~ 247 (270)
T PF14253_consen 234 IDEIIIYGHSLGEV 247 (270)
T ss_pred CCEEEEEeCCCchh
Confidence 57899999999974
No 253
>cd07204 Pat_PNPLA_like Patatin-like phospholipase domain containing protein family. Members of this family share a patain domain, initially discovered in potato tubers. PNPLA protein members show non-specific hydrolase activity with a variety of substrates such as triacylglycerol, phospholipids, and retinylesters. It contains the lipase consensus sequence (Gly-X-Ser-X-Gly). Nomenclature of PNPLA family could be misleading as some of the mammalian members of this family show hydrolase, but no phospholipase activity.
Probab=85.11 E-value=3.1 Score=23.57 Aligned_cols=34 Identities=9% Similarity=0.205 Sum_probs=24.4
Q ss_pred HHHHHHHhcCCC--c--EEEEEEchHHHHHHHHHhhcC
Q 038643 10 ASVDWLKANGSK--K--VGMVGYCMGSALTIACSASLM 43 (52)
Q Consensus 10 ~~~~~l~~~~~~--~--i~l~G~S~GG~~a~~~a~~~p 43 (52)
.+++.|.+++.. + -.+.|-|.|+.++..+++..+
T Consensus 16 GVl~~L~e~g~~l~~~~~~i~GtSAGAl~aa~~a~g~~ 53 (243)
T cd07204 16 GVASALREHAPRLLQNARRIAGASAGAIVAAVVLCGVS 53 (243)
T ss_pred HHHHHHHHcCcccccCCCEEEEEcHHHHHHHHHHhCCC
Confidence 355677666422 1 278999999999999987643
No 254
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=85.05 E-value=2 Score=26.36 Aligned_cols=33 Identities=15% Similarity=0.090 Sum_probs=24.4
Q ss_pred HHHHHHHhcCCCcEEEEEEchHHHHHHHHHhhc
Q 038643 10 ASVDWLKANGSKKVGMVGYCMGSALTIACSASL 42 (52)
Q Consensus 10 ~~~~~l~~~~~~~i~l~G~S~GG~~a~~~a~~~ 42 (52)
.+++.|.+++..+=.+.|-|.|+.++..++...
T Consensus 100 Gv~kaL~e~gl~p~~i~GtS~Gaivaa~~a~~~ 132 (391)
T cd07229 100 GVVKALWLRGLLPRIITGTATGALIAALVGVHT 132 (391)
T ss_pred HHHHHHHHcCCCCceEEEecHHHHHHHHHHcCC
Confidence 356667777633335899999999999999753
No 255
>cd07222 Pat_PNPLA4 Patatin-like phospholipase domain containing protein 4. PNPLA4, also known as GS2 (gene sequence-2), shows both lipase and transacylation activities. GS2 lipase is expressed in various tissues, predominantly in muscle and adipocytes tissue. It is also expressed in keratinocytes and shows retinyl ester hydrolase, acylglycerol, TG hydrolase, and PLA2 activity. This family includes patatin-like proteins: GS2 from mammals, PNPLA4 (Patatin-like phospholipase domain-containing protein 4), and iPLA2-eta (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=84.36 E-value=2.8 Score=23.81 Aligned_cols=31 Identities=23% Similarity=0.302 Sum_probs=22.9
Q ss_pred HHHHHHHhcCCC---cE-EEEEEchHHHHHHHHHh
Q 038643 10 ASVDWLKANGSK---KV-GMVGYCMGSALTIACSA 40 (52)
Q Consensus 10 ~~~~~l~~~~~~---~i-~l~G~S~GG~~a~~~a~ 40 (52)
.+++.|.+++.. ++ .+.|-|.|+.++..++.
T Consensus 16 GVl~~L~e~g~~l~~~~~~i~GtSaGAl~aa~~a~ 50 (246)
T cd07222 16 GAAKALLRHGKKLLKRVKRFAGASAGSLVAAVLLT 50 (246)
T ss_pred HHHHHHHHcCchhhccCCEEEEECHHHHHHHHHhc
Confidence 456777776532 33 68999999999999983
No 256
>KOG3253 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=84.33 E-value=0.74 Score=30.14 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=20.0
Q ss_pred CCcEEEEEEchHHHHHHHHHhhcC
Q 038643 20 SKKVGMVGYCMGSALTIACSASLM 43 (52)
Q Consensus 20 ~~~i~l~G~S~GG~~a~~~a~~~p 43 (52)
..+|+++|+|||+.+++..+....
T Consensus 249 ha~IiLvGrsmGAlVachVSpsns 272 (784)
T KOG3253|consen 249 HAPIILVGRSMGALVACHVSPSNS 272 (784)
T ss_pred CCceEEEecccCceeeEEeccccC
Confidence 578999999999988888875544
No 257
>cd07211 Pat_PNPLA8 Patatin-like phospholipase domain containing protein 8. PNPLA8 is a Ca-independent myocardial phospholipase which maintains mitochondrial integrity. PNPLA8 is also known as iPLA2-gamma. In humans, it is predominantly expressed in heart tissue. iPLA2-gamma can catalyze both phospholipase A1 and A2 reactions (PLA1 and PLA2 respectively). This family includes PNPLA8 (iPLA2-gamma) from Homo sapiens and iPLA2-2 from Mus musculus.
Probab=83.86 E-value=2.2 Score=24.77 Aligned_cols=17 Identities=18% Similarity=0.247 Sum_probs=15.0
Q ss_pred EEEEEchHHHHHHHHHh
Q 038643 24 GMVGYCMGSALTIACSA 40 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~ 40 (52)
.+.|.|.||.++..++.
T Consensus 44 li~GTStGgiiA~~la~ 60 (308)
T cd07211 44 YICGVSTGAILAFLLGL 60 (308)
T ss_pred EEEecChhHHHHHHHhc
Confidence 37899999999999885
No 258
>cd07220 Pat_PNPLA2 Patatin-like phospholipase domain containing protein 2. PNPLA2 plays a key role in hydrolysis of stored triacylglecerols and is also known as adipose triglyceride lipase (ATGL). Members of this family share a patain domain, initially discovered in potato tubers. ATGL is expressed in white and brown adipose tissue in high mRNA levels. Mutations in PNPLA2 encoding adipose triglyceride lipase (ATGL) leads to neutral lipid storage disease (NLSD) which is characterized by the accumulation of triglycerides in multiple tissues. ATGL mutations are also commonly associated with severe forms of skeletal- and cardio-myopathy. This family includes patatin-like proteins: TTS-2.2 (transport-secretion protein 2.2), PNPLA2 (Patatin-like phospholipase domain-containing protein 2), and iPLA2-zeta (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=83.40 E-value=3.6 Score=23.57 Aligned_cols=34 Identities=12% Similarity=0.086 Sum_probs=24.1
Q ss_pred HHHHHHHhcCCC----cEEEEEEchHHHHHHHHHhhcC
Q 038643 10 ASVDWLKANGSK----KVGMVGYCMGSALTIACSASLM 43 (52)
Q Consensus 10 ~~~~~l~~~~~~----~i~l~G~S~GG~~a~~~a~~~p 43 (52)
.+++.|.++... .-.+.|-|.|+.++..+++..+
T Consensus 21 GVl~~L~e~g~~l~~~~~~i~G~SAGAl~aa~~a~g~~ 58 (249)
T cd07220 21 GVASCLLEHAPFLVANARKIYGASAGALTATALVTGVC 58 (249)
T ss_pred HHHHHHHhcCCcccccCCeEEEEcHHHHHHHHHHcCCC
Confidence 356777666422 2457899999999999887543
No 259
>PRK05809 3-hydroxybutyryl-CoA dehydratase; Validated
Probab=83.16 E-value=4.9 Score=22.76 Aligned_cols=18 Identities=11% Similarity=0.497 Sum_probs=15.1
Q ss_pred EEEEEchHHHHHHHHHhh
Q 038643 24 GMVGYCMGSALTIACSAS 41 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~ 41 (52)
.+-|+|+||.+.+.+++.
T Consensus 103 av~G~a~GgG~~lal~cD 120 (260)
T PRK05809 103 AINGFALGGGCELSMACD 120 (260)
T ss_pred EEcCeeecHHHHHHHhCC
Confidence 366999999999998864
No 260
>PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine This enzyme is consequently essential for the survival of bacteria, plants and fungi. Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A.
Probab=83.13 E-value=5.6 Score=23.67 Aligned_cols=33 Identities=15% Similarity=0.324 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEchHHHHHHHHH
Q 038643 4 VVADISASVDWLKANGSKKVGMVGYCMGSALTIACS 39 (52)
Q Consensus 4 ~~~d~~~~~~~l~~~~~~~i~l~G~S~GG~~a~~~a 39 (52)
-++++...+||.+++ ...-+.-|||+..++..-
T Consensus 119 YW~El~~i~dwa~~~---v~stl~iCWgAqAaLy~~ 151 (298)
T PF04204_consen 119 YWDELTEIFDWAKTH---VTSTLFICWGAQAALYHF 151 (298)
T ss_dssp THHHHHHHHHHHHHH---EEEEEEETHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHc---CCcchhhhHHHHHHHHHH
Confidence 467889999999875 456778899999988875
No 261
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=83.03 E-value=4 Score=22.77 Aligned_cols=35 Identities=14% Similarity=0.209 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhcCCCcE--EEEEEchHHHHHHHHHhh
Q 038643 6 ADISASVDWLKANGSKKV--GMVGYCMGSALTIACSAS 41 (52)
Q Consensus 6 ~d~~~~~~~l~~~~~~~i--~l~G~S~GG~~a~~~a~~ 41 (52)
+.+...+..+...+ .++ .+-|++.||...+.+++-
T Consensus 77 ~~~~~l~~~l~~~~-kp~Iaav~G~a~GgG~~lala~D 113 (245)
T PF00378_consen 77 RRFQELLSRLANFP-KPTIAAVNGHAVGGGFELALACD 113 (245)
T ss_dssp HHHHHHHHHHHHSS-SEEEEEESSEEETHHHHHHHHSS
T ss_pred hhhccccccchhhh-hheeecccccccccccccccccc
Confidence 33444444444443 333 355999999998888854
No 262
>cd07218 Pat_iPLA2 Calcium-independent phospholipase A2; Classified as Group IVA-1 PLA2. Calcium-independent phospholipase A2; otherwise known as Group IVA-1 PLA2. It contains the lipase consensus sequence (Gly-X-Ser-X-Gly);mutagenesis experiments confirm the role of this serine as a nucleophile. Some members of this group show triacylglycerol lipase activity (EC 3:1:1:3). Members include iPLA-1, iPLA-2, and iPLA-3 from Aedes aegypti and show acylglycerol transacylase/lipase activity. Also includes putative iPLA2-eta from Pediculus humanus corporis which shows patatin-like phospholipase activity.
Probab=82.78 E-value=3.9 Score=23.34 Aligned_cols=34 Identities=15% Similarity=0.043 Sum_probs=23.7
Q ss_pred HHHHHHHhcCC--CcEEEEEEchHHHHHHHHHhhcC
Q 038643 10 ASVDWLKANGS--KKVGMVGYCMGSALTIACSASLM 43 (52)
Q Consensus 10 ~~~~~l~~~~~--~~i~l~G~S~GG~~a~~~a~~~p 43 (52)
.+++.|++++. ..-.+.|-|.|+.++..+++..+
T Consensus 17 GVl~aL~e~g~~~~~d~i~GtSAGAl~aa~~a~g~~ 52 (245)
T cd07218 17 GVAVCLKKYAPHLLLNKISGASAGALAACCLLCDLP 52 (245)
T ss_pred HHHHHHHHhCcccCCCeEEEEcHHHHHHHHHHhCCc
Confidence 35566776641 12238999999999999987643
No 263
>COG0331 FabD (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]
Probab=82.64 E-value=2.5 Score=25.05 Aligned_cols=28 Identities=21% Similarity=0.250 Sum_probs=20.6
Q ss_pred HHHHhcC--CCcEEEEEEchHHHHHHHHHh
Q 038643 13 DWLKANG--SKKVGMVGYCMGSALTIACSA 40 (52)
Q Consensus 13 ~~l~~~~--~~~i~l~G~S~GG~~a~~~a~ 40 (52)
+-++++. .++..+.|||+|=+.++..+.
T Consensus 75 ~~l~~~~~~~~p~~~aGHSlGEysAl~~ag 104 (310)
T COG0331 75 RVLAEQGLGVKPDFVAGHSLGEYSALAAAG 104 (310)
T ss_pred HHHHHhcCCCCCceeecccHhHHHHHHHcc
Confidence 3344433 567789999999998888774
No 264
>PRK08139 enoyl-CoA hydratase; Validated
Probab=82.45 E-value=7 Score=22.32 Aligned_cols=17 Identities=12% Similarity=0.249 Sum_probs=14.5
Q ss_pred EEEEchHHHHHHHHHhh
Q 038643 25 MVGYCMGSALTIACSAS 41 (52)
Q Consensus 25 l~G~S~GG~~a~~~a~~ 41 (52)
+-|+|+||.+.+.+++.
T Consensus 111 v~G~a~GgG~~lalacD 127 (266)
T PRK08139 111 VHGIATAAGCQLVASCD 127 (266)
T ss_pred ECceeeHHHHHHHHhCC
Confidence 55999999999988864
No 265
>PRK08150 enoyl-CoA hydratase; Provisional
Probab=82.24 E-value=5.6 Score=22.58 Aligned_cols=18 Identities=28% Similarity=0.506 Sum_probs=15.0
Q ss_pred EEEEEchHHHHHHHHHhh
Q 038643 24 GMVGYCMGSALTIACSAS 41 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~ 41 (52)
.+-|+|+||.+.+.+++.
T Consensus 98 av~G~a~GgG~~lalacD 115 (255)
T PRK08150 98 ALHGAVVGGGLELASAAH 115 (255)
T ss_pred EECCEEEcHHHHHHHhCC
Confidence 356999999999998864
No 266
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=82.20 E-value=6 Score=22.45 Aligned_cols=18 Identities=33% Similarity=0.617 Sum_probs=15.0
Q ss_pred EEEEEchHHHHHHHHHhh
Q 038643 24 GMVGYCMGSALTIACSAS 41 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~ 41 (52)
.+-|+++||.+.+.+++-
T Consensus 101 av~G~a~GgG~~lalacD 118 (258)
T PRK09076 101 AINGYAMGGGLECALACD 118 (258)
T ss_pred EECCEEecHHHHHHHhCC
Confidence 356999999999998864
No 267
>PRK05981 enoyl-CoA hydratase; Provisional
Probab=82.19 E-value=6.4 Score=22.37 Aligned_cols=18 Identities=17% Similarity=0.281 Sum_probs=14.9
Q ss_pred EEEEEchHHHHHHHHHhh
Q 038643 24 GMVGYCMGSALTIACSAS 41 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~ 41 (52)
.+-|+|+||.+.+.+++-
T Consensus 109 av~G~a~GgG~~lalacD 126 (266)
T PRK05981 109 AVNGPAAGVGMSFALMGD 126 (266)
T ss_pred EECCEeehHHHHHHHhCC
Confidence 356999999999988854
No 268
>cd07221 Pat_PNPLA3 Patatin-like phospholipase domain containing protein 3. PNPLA3 is a triacylglycerol lipase that mediates triacylglycerol hydrolysis in adipocytes and is an indicator of the nutritional state. PNPLA3 is also known as adiponutrin (ADPN) or iPLA2-epsilon. Human adiponutrins are bound to the cell membrane of adipocytes and show transacylase, TG hydrolase, and PLA2 activity. This family includes patatin-like proteins: ADPN (adiponutrin) from mammals, PNPLA3 (Patatin-like phospholipase domain-containing protein 3), and iPLA2-epsilon (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=81.65 E-value=4.7 Score=23.13 Aligned_cols=34 Identities=12% Similarity=0.117 Sum_probs=23.6
Q ss_pred HHHHHHHhcCCC----cEEEEEEchHHHHHHHHHhhcC
Q 038643 10 ASVDWLKANGSK----KVGMVGYCMGSALTIACSASLM 43 (52)
Q Consensus 10 ~~~~~l~~~~~~----~i~l~G~S~GG~~a~~~a~~~p 43 (52)
.+++.|.++... .-.+.|-|.|+.++..+++..+
T Consensus 17 GVl~aL~e~~~~l~~~~~~i~GtSAGAl~aa~~asg~~ 54 (252)
T cd07221 17 GVTRCLSERAPHLLRDARMFFGASAGALHCVTFLSGLP 54 (252)
T ss_pred HHHHHHHHhCcchhccCCEEEEEcHHHHHHHHHHhCCC
Confidence 345666665322 2358999999999999987544
No 269
>PHA01735 hypothetical protein
Probab=81.64 E-value=1.9 Score=20.49 Aligned_cols=26 Identities=38% Similarity=0.633 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHHHHhcCCCcEEEEE
Q 038643 2 VGVVADISASVDWLKANGSKKVGMVG 27 (52)
Q Consensus 2 ~~~~~d~~~~~~~l~~~~~~~i~l~G 27 (52)
|....|+.++++||++....-+..-|
T Consensus 29 eATtaDL~AA~d~Lk~NdItgv~~~g 54 (76)
T PHA01735 29 EATTADLRAACDWLKSNDITGVAVDG 54 (76)
T ss_pred cccHHHHHHHHHHHHHCCCceeeCCC
Confidence 34578999999999988644444444
No 270
>PF10081 Abhydrolase_9: Alpha/beta-hydrolase family; InterPro: IPR012037 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=81.34 E-value=2.1 Score=25.34 Aligned_cols=31 Identities=16% Similarity=0.044 Sum_probs=21.4
Q ss_pred HHHHHHHHHhcC---CCcEEEEEEchHHHHHHHH
Q 038643 8 ISASVDWLKANG---SKKVGMVGYCMGSALTIAC 38 (52)
Q Consensus 8 ~~~~~~~l~~~~---~~~i~l~G~S~GG~~a~~~ 38 (52)
++++.+++.+.+ ..|+.+.|-|+|+.-+...
T Consensus 93 ~~aV~~~~~~lP~~~RPkL~l~GeSLGa~g~~~a 126 (289)
T PF10081_consen 93 FEAVYARWSTLPEDRRPKLYLYGESLGAYGGEAA 126 (289)
T ss_pred HHHHHHHHHhCCcccCCeEEEeccCccccchhhh
Confidence 344445555554 4789999999998876553
No 271
>PLN02851 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=81.28 E-value=5.3 Score=24.65 Aligned_cols=19 Identities=26% Similarity=0.300 Sum_probs=15.1
Q ss_pred EEEEEchHHHHHHHHHhhc
Q 038643 24 GMVGYCMGSALTIACSASL 42 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~~ 42 (52)
.+-|++|||.+.+.+++.+
T Consensus 144 ~v~G~amGGG~gLal~~D~ 162 (407)
T PLN02851 144 IMDGITMGCGAGISIPGMF 162 (407)
T ss_pred EEcCEEeeHHHHHHHhCCE
Confidence 3559999999999887543
No 272
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=81.18 E-value=8.4 Score=22.32 Aligned_cols=48 Identities=13% Similarity=0.109 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEEchHHHH-HHHHHhhcCCceeEeeeC
Q 038643 5 VADISASVDWLKANGSKKVGMVGYCMGSAL-TIACSASLMERKHTFRMN 52 (52)
Q Consensus 5 ~~d~~~~~~~l~~~~~~~i~l~G~S~GG~~-a~~~a~~~p~~~~~~~~~ 52 (52)
.+|...+++..++.+..++.++|.+....- ++.++.++|....++.+|
T Consensus 16 ~~d~~~vi~~a~~~gv~~~~~~g~~~~~~~~~~~la~~y~~v~~~~G~H 64 (256)
T COG0084 16 DEDRDEVIARAREAGVKKMVVVGTDLEDFKRALELAEKYPNVYAAVGVH 64 (256)
T ss_pred cCCHHHHHHHHHHcCCcEEEEeecCHHHHHHHHHHHHhCCCeEEEEeeC
Confidence 357777887777777789999999998876 888888899877777654
No 273
>PRK06142 enoyl-CoA hydratase; Provisional
Probab=81.11 E-value=5.3 Score=22.79 Aligned_cols=18 Identities=17% Similarity=0.719 Sum_probs=15.1
Q ss_pred EEEEEchHHHHHHHHHhh
Q 038643 24 GMVGYCMGSALTIACSAS 41 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~ 41 (52)
.+-|+|+||.+.+.+++.
T Consensus 115 av~G~a~GgG~~lalacD 132 (272)
T PRK06142 115 AVQGWCIGGGVDLISACD 132 (272)
T ss_pred EecCccccchHHHHHhCC
Confidence 356999999999998864
No 274
>cd07231 Pat_SDP1-like Sugar-Dependent 1 like lipase. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This acyl-hydrolase domain is homologus to yeast triacylglycerol lipase 3 and human adipose triglyceride lipase. This family includes SDP1 from Arabidopsis thaliana.
Probab=81.10 E-value=3.6 Score=24.73 Aligned_cols=33 Identities=15% Similarity=0.076 Sum_probs=23.5
Q ss_pred HHHHHHHhcCCCcEEEEEEchHHHHHHHHHhhc
Q 038643 10 ASVDWLKANGSKKVGMVGYCMGSALTIACSASL 42 (52)
Q Consensus 10 ~~~~~l~~~~~~~i~l~G~S~GG~~a~~~a~~~ 42 (52)
.+++.+.+++..+-.+.|-|.|+.++..++...
T Consensus 85 GVlkaL~e~gl~p~~i~GsSaGAivaa~~~~~t 117 (323)
T cd07231 85 GVVRTLVEHQLLPRVIAGSSVGSIVCAIIATRT 117 (323)
T ss_pred HHHHHHHHcCCCCCEEEEECHHHHHHHHHHcCC
Confidence 345666666533345899999999999988753
No 275
>TIGR02802 Pal_lipo peptidoglycan-associated lipoprotein. Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.
Probab=80.98 E-value=4.9 Score=19.49 Aligned_cols=27 Identities=30% Similarity=0.308 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHhcCCCcEEEEEEc
Q 038643 3 GVVADISASVDWLKANGSKKVGMVGYC 29 (52)
Q Consensus 3 ~~~~d~~~~~~~l~~~~~~~i~l~G~S 29 (52)
.....+..+.++|+..+..+|.+.||+
T Consensus 14 ~~~~~L~~~a~~l~~~~~~~i~I~Ght 40 (104)
T TIGR02802 14 EAQAILDAHAAYLKKNPSVRVTIEGHT 40 (104)
T ss_pred HHHHHHHHHHHHHHHCCCcEEEEEEec
Confidence 345567778888888766689999997
No 276
>cd07995 TPK Thiamine pyrophosphokinase. Thiamine pyrophosphokinase (TPK, EC:2.7.6.2, also spelled thiamin pyrophosphokinase) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamine) to form the coenzyme thiamine pyrophosphate (TPP). TPP is required for central metabolic functions, and thiamine deficiency is associated with potentially fatal human diseases. The structure of thiamine pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis.
Probab=80.73 E-value=2.1 Score=23.59 Aligned_cols=34 Identities=15% Similarity=0.303 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHHHhcCCCcEEEEEEchHHHHHHH
Q 038643 3 GVVADISASVDWLKANGSKKVGMVGYCMGSALTIA 37 (52)
Q Consensus 3 ~~~~d~~~~~~~l~~~~~~~i~l~G~S~GG~~a~~ 37 (52)
+...|.+.+++++.+++..+|.++| .+||.+=..
T Consensus 74 KD~TD~e~Al~~~~~~~~~~i~i~G-a~GgR~DH~ 107 (208)
T cd07995 74 KDFTDFEKALKLALERGADEIVILG-ATGGRLDHT 107 (208)
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEEc-cCCCcHHHH
Confidence 4567999999999988778999999 567765333
No 277
>cd07206 Pat_TGL3-4-5_SDP1 Triacylglycerol lipase 3, 4, and 5 and Sugar-Dependent 1 lipase. Triacylglycerol lipases are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This family includes subfamilies of proteins: TGL3, TGL4, TGL5, and SDP1.
Probab=80.25 E-value=5.5 Score=23.66 Aligned_cols=33 Identities=12% Similarity=0.022 Sum_probs=22.9
Q ss_pred HHHHHHHhcCCCcEEEEEEchHHHHHHHHHhhc
Q 038643 10 ASVDWLKANGSKKVGMVGYCMGSALTIACSASL 42 (52)
Q Consensus 10 ~~~~~l~~~~~~~i~l~G~S~GG~~a~~~a~~~ 42 (52)
.+++.+.+++..+=.+.|-|.|+.++..+++..
T Consensus 86 Gvl~aL~e~~l~~~~i~GtSaGAi~aa~~~~~~ 118 (298)
T cd07206 86 GVVKALWEQDLLPRVISGSSAGAIVAALLGTHT 118 (298)
T ss_pred HHHHHHHHcCCCCCEEEEEcHHHHHHHHHHcCC
Confidence 345566555433335899999999999988653
No 278
>cd01819 Patatin_and_cPLA2 Patatins and Phospholipases. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates. This family also includes the catalytic domain of cytosolic phospholipase A2 (PLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bond of phospholipids to release arachidonic acid. At the active site, cPLA2 contains a serine nucleophile through which the catalytic mechanism is initiated. The active site is partially covered by a solvent-accessible flexible lid. cPLA2 displays interfacial activation as it exists in both "closed lid" and "open lid" forms.
Probab=80.20 E-value=5.9 Score=20.79 Aligned_cols=30 Identities=13% Similarity=0.060 Sum_probs=21.4
Q ss_pred HHHHHHHhcCC--CcEEEEEEchHHHHHHHHH
Q 038643 10 ASVDWLKANGS--KKVGMVGYCMGSALTIACS 39 (52)
Q Consensus 10 ~~~~~l~~~~~--~~i~l~G~S~GG~~a~~~a 39 (52)
.+++.+.++.. ..-.+.|.|.|+.++..++
T Consensus 15 gvl~~l~~~~~~~~~~~~~G~SaGa~~~~~~~ 46 (155)
T cd01819 15 GVLSALAERGLLDCVTYLAGTSGGAWVAATLY 46 (155)
T ss_pred HHHHHHHHhCCccCCCEEEEEcHHHHHHHHHh
Confidence 34566666543 3446789999999998877
No 279
>COG1564 THI80 Thiamine pyrophosphokinase [Coenzyme metabolism]
Probab=80.14 E-value=3.6 Score=23.29 Aligned_cols=36 Identities=19% Similarity=0.307 Sum_probs=28.9
Q ss_pred hhHHHHHHHHHHHHHhcCCCcEEEEEEchHHHHHHHH
Q 038643 2 VGVVADISASVDWLKANGSKKVGMVGYCMGSALTIAC 38 (52)
Q Consensus 2 ~~~~~d~~~~~~~l~~~~~~~i~l~G~S~GG~~a~~~ 38 (52)
|+...|.+-++++..+++...+.++| .+||.+=..+
T Consensus 74 eKd~TD~elAl~~a~e~g~d~i~i~G-a~GGR~DH~l 109 (212)
T COG1564 74 EKDSTDLELALDEALERGADEIVILG-ALGGRLDHAL 109 (212)
T ss_pred hhccchHHHHHHHHHHcCCCEEEEEe-cCCChHHHHH
Confidence 45667999999999999888899998 8999763333
No 280
>KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism]
Probab=80.08 E-value=3.2 Score=25.96 Aligned_cols=39 Identities=15% Similarity=0.204 Sum_probs=29.0
Q ss_pred hHHHHHHHHH-HHHHhcC---CCcEEEEEEchHHHHHHHHHhh
Q 038643 3 GVVADISASV-DWLKANG---SKKVGMVGYCMGSALTIACSAS 41 (52)
Q Consensus 3 ~~~~d~~~~~-~~l~~~~---~~~i~l~G~S~GG~~a~~~a~~ 41 (52)
+..+|.-.++ +|+++.| ..++.+.|-|.+|...-.+|.+
T Consensus 146 ~~A~d~~~FL~~wf~kfPey~~~~fyI~GESYAG~YVP~La~~ 188 (454)
T KOG1282|consen 146 GTAKDNYEFLQKWFEKFPEYKSNDFYIAGESYAGHYVPALAQE 188 (454)
T ss_pred HHHHHHHHHHHHHHHhChhhcCCCeEEecccccceehHHHHHH
Confidence 4456665555 8888765 5789999999999777777654
No 281
>PRK06143 enoyl-CoA hydratase; Provisional
Probab=80.05 E-value=7 Score=22.20 Aligned_cols=18 Identities=28% Similarity=0.813 Sum_probs=15.1
Q ss_pred EEEEEchHHHHHHHHHhh
Q 038643 24 GMVGYCMGSALTIACSAS 41 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~ 41 (52)
.+-|+++||...+.+++-
T Consensus 106 av~G~a~GgG~~lalacD 123 (256)
T PRK06143 106 RIPGWCLGGGLELAAACD 123 (256)
T ss_pred EECCEEeehhHHHHHhCC
Confidence 466999999999998854
No 282
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=79.90 E-value=7.4 Score=22.08 Aligned_cols=18 Identities=28% Similarity=0.726 Sum_probs=15.1
Q ss_pred EEEEEchHHHHHHHHHhh
Q 038643 24 GMVGYCMGSALTIACSAS 41 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~ 41 (52)
.+-||++||.+.+.+++-
T Consensus 95 av~G~a~GgG~~lal~cD 112 (251)
T TIGR03189 95 AVRGQCLGGGLEVAAAGN 112 (251)
T ss_pred EecCeeeeHHHHHHHhCC
Confidence 466999999999998854
No 283
>PRK10802 peptidoglycan-associated outer membrane lipoprotein; Provisional
Probab=79.71 E-value=7.4 Score=21.13 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHhcCCCcEEEEEEc
Q 038643 3 GVVADISASVDWLKANGSKKVGMVGYC 29 (52)
Q Consensus 3 ~~~~d~~~~~~~l~~~~~~~i~l~G~S 29 (52)
...+.+....++|++.+..+|.+.||+
T Consensus 83 ~~~~~L~~~a~~L~~~p~~~v~I~Ght 109 (173)
T PRK10802 83 DFAQMLDAHANFLRSNPSYKVTVEGHA 109 (173)
T ss_pred HHHHHHHHHHHHHHhCCCceEEEEEec
Confidence 344567777888888776789999997
No 284
>PRK08272 enoyl-CoA hydratase; Provisional
Probab=79.71 E-value=7.9 Score=22.53 Aligned_cols=18 Identities=28% Similarity=0.589 Sum_probs=14.8
Q ss_pred EEEEEchHHHHHHHHHhh
Q 038643 24 GMVGYCMGSALTIACSAS 41 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~ 41 (52)
.+-|+|+||.+.+.+++-
T Consensus 133 aV~G~a~GgG~~lalacD 150 (302)
T PRK08272 133 KVHGYCVAGGTDIALHCD 150 (302)
T ss_pred EEccEeehhhHHHHHhCC
Confidence 356999999999988853
No 285
>PRK05980 enoyl-CoA hydratase; Provisional
Probab=79.67 E-value=7.1 Score=22.11 Aligned_cols=18 Identities=17% Similarity=0.318 Sum_probs=15.1
Q ss_pred EEEEEchHHHHHHHHHhh
Q 038643 24 GMVGYCMGSALTIACSAS 41 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~ 41 (52)
.+-|+|+||...+.+++.
T Consensus 106 av~G~a~GgG~~lal~cD 123 (260)
T PRK05980 106 AVNGLAFGGGCEITEAVH 123 (260)
T ss_pred EEcCEEEhhhhHHhHhCC
Confidence 356999999999998854
No 286
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=79.43 E-value=8.1 Score=21.96 Aligned_cols=18 Identities=28% Similarity=0.565 Sum_probs=15.1
Q ss_pred EEEEEchHHHHHHHHHhh
Q 038643 24 GMVGYCMGSALTIACSAS 41 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~ 41 (52)
.+-|+++||.+.+.+++.
T Consensus 104 av~G~a~GgG~~lalacD 121 (261)
T PRK08138 104 AVNGYALGGGCELAMHAD 121 (261)
T ss_pred EEccEEEcHHHHHHHhCC
Confidence 466999999999998864
No 287
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=79.43 E-value=7.6 Score=21.91 Aligned_cols=19 Identities=21% Similarity=0.434 Sum_probs=15.5
Q ss_pred EEEEEchHHHHHHHHHhhc
Q 038643 24 GMVGYCMGSALTIACSASL 42 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~~ 42 (52)
.+-|+++||.+.+.+++.+
T Consensus 102 av~G~a~GgG~~lal~cD~ 120 (259)
T PRK06688 102 AVNGPAVGVGVSLALACDL 120 (259)
T ss_pred EECCeeecHHHHHHHhCCE
Confidence 4669999999999888643
No 288
>TIGR01378 thi_PPkinase thiamine pyrophosphokinase. This model has been revised. Originally, it described strictly eukaryotic thiamine pyrophosphokinase. However, it is now expanded to include also homologous enzymes, apparently functionally equivalent, from species that rely on thiamine pyrophosphokinase rather than thiamine-monophosphate kinase (TIGR01379) to produce the active TPP cofactor. This includes the thiamine pyrophosphokinase from Bacillus subtilis, previously designated YloS.
Probab=79.34 E-value=2.3 Score=23.48 Aligned_cols=33 Identities=15% Similarity=0.388 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHHHHHhcCCCcEEEEEEchHHHHH
Q 038643 2 VGVVADISASVDWLKANGSKKVGMVGYCMGSALT 35 (52)
Q Consensus 2 ~~~~~d~~~~~~~l~~~~~~~i~l~G~S~GG~~a 35 (52)
++...|.+.+++++.+++.++|.++| .+||.+=
T Consensus 69 eKD~TD~e~Al~~~~~~~~~~i~i~G-a~GgR~D 101 (203)
T TIGR01378 69 EKDTTDLELALKYALERGADEITILG-ATGGRLD 101 (203)
T ss_pred CCCCCHHHHHHHHHHHCCCCEEEEEc-CCCCcHH
Confidence 34557999999999888778899998 4788763
No 289
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=79.07 E-value=8.3 Score=22.12 Aligned_cols=18 Identities=28% Similarity=0.466 Sum_probs=14.9
Q ss_pred EEEEEchHHHHHHHHHhh
Q 038643 24 GMVGYCMGSALTIACSAS 41 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~ 41 (52)
.+-|+++||...+.+++.
T Consensus 115 av~G~a~GgG~~LalacD 132 (276)
T PRK05864 115 AVNGPAIGGGLCLALAAD 132 (276)
T ss_pred EECCEeehhHHHHHHhCC
Confidence 356999999999998854
No 290
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=79.01 E-value=7.3 Score=21.97 Aligned_cols=18 Identities=22% Similarity=0.480 Sum_probs=14.9
Q ss_pred EEEEEchHHHHHHHHHhh
Q 038643 24 GMVGYCMGSALTIACSAS 41 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~ 41 (52)
.+-|+++||.+.+.+++.
T Consensus 92 av~G~a~GgG~~lal~cD 109 (243)
T PRK07854 92 AINGPAIGAGLQLAMACD 109 (243)
T ss_pred EecCcccccHHHHHHhCC
Confidence 456999999999998853
No 291
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=78.98 E-value=8 Score=21.89 Aligned_cols=18 Identities=17% Similarity=0.407 Sum_probs=15.0
Q ss_pred EEEEEchHHHHHHHHHhh
Q 038643 24 GMVGYCMGSALTIACSAS 41 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~ 41 (52)
.+-|+++||.+.+.+++-
T Consensus 104 av~G~a~GgG~~lala~D 121 (260)
T PRK07511 104 AVEGAAAGAGFSLALACD 121 (260)
T ss_pred EECCeeehHHHHHHHhCC
Confidence 356999999999998854
No 292
>PRK07260 enoyl-CoA hydratase; Provisional
Probab=78.85 E-value=7.7 Score=21.93 Aligned_cols=18 Identities=28% Similarity=0.348 Sum_probs=15.0
Q ss_pred EEEEEchHHHHHHHHHhh
Q 038643 24 GMVGYCMGSALTIACSAS 41 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~ 41 (52)
.+-|+|+||...+.+++-
T Consensus 104 av~G~a~GgG~~lala~D 121 (255)
T PRK07260 104 CVDGAVAGAAANMAVAAD 121 (255)
T ss_pred EecCeeehhhHHHHHhCC
Confidence 466999999999998854
No 293
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=78.85 E-value=9.5 Score=21.53 Aligned_cols=18 Identities=28% Similarity=0.431 Sum_probs=14.8
Q ss_pred EEEEEchHHHHHHHHHhh
Q 038643 24 GMVGYCMGSALTIACSAS 41 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~ 41 (52)
.+-|+++||.+.+.+++-
T Consensus 95 av~G~a~GgG~~lal~cD 112 (248)
T PRK06072 95 AINGVTAGACIGIALSTD 112 (248)
T ss_pred EECCeeehHHHHHHHhCC
Confidence 356999999999988854
No 294
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=78.74 E-value=6.4 Score=22.32 Aligned_cols=18 Identities=6% Similarity=0.152 Sum_probs=15.0
Q ss_pred EEEEEchHHHHHHHHHhh
Q 038643 24 GMVGYCMGSALTIACSAS 41 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~ 41 (52)
.+-|+++||.+.+.+++.
T Consensus 107 av~G~a~GgG~~lalacD 124 (260)
T PRK07827 107 AIDGHVRAGGFGLVGACD 124 (260)
T ss_pred EEcCeeecchhhHHHhCC
Confidence 356999999999988864
No 295
>PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase
Probab=78.71 E-value=7.2 Score=22.36 Aligned_cols=18 Identities=22% Similarity=0.637 Sum_probs=15.0
Q ss_pred EEEEEchHHHHHHHHHhh
Q 038643 24 GMVGYCMGSALTIACSAS 41 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~ 41 (52)
.+-|+++||.+.+.+++.
T Consensus 117 av~G~a~GgG~~lal~cD 134 (275)
T PLN02664 117 AIHGACIGGGVDIVTACD 134 (275)
T ss_pred EECCccccchHHHHHhCC
Confidence 356999999999998854
No 296
>COG3007 Uncharacterized paraquat-inducible protein B [Function unknown]
Probab=78.47 E-value=9.7 Score=23.22 Aligned_cols=37 Identities=35% Similarity=0.539 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhcC-----CCcEEEEEEchHHHHHHHHHhhc
Q 038643 6 ADISASVDWLKANG-----SKKVGMVGYCMGSALTIACSASL 42 (52)
Q Consensus 6 ~d~~~~~~~l~~~~-----~~~i~l~G~S~GG~~a~~~a~~~ 42 (52)
..+..-++|.+... ++|+-++|-|-|=.++.++++.+
T Consensus 22 ~nV~~QI~y~k~~gp~~ngPKkVLviGaSsGyGLa~RIsaaF 63 (398)
T COG3007 22 ANVLQQIDYVKAAGPIKNGPKKVLVIGASSGYGLAARISAAF 63 (398)
T ss_pred HHHHHHHHHHHhcCCccCCCceEEEEecCCcccHHHHHHHHh
Confidence 45667788888873 68999999999988888887654
No 297
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=78.45 E-value=6.7 Score=22.40 Aligned_cols=18 Identities=28% Similarity=0.366 Sum_probs=15.0
Q ss_pred EEEEEchHHHHHHHHHhh
Q 038643 24 GMVGYCMGSALTIACSAS 41 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~ 41 (52)
.+-|+++||.+.+.+++.
T Consensus 112 av~G~a~GgG~~lalacD 129 (268)
T PRK07327 112 AIHGPAVGAGLVAALLAD 129 (268)
T ss_pred EEcCeeeehhhHHHHhCC
Confidence 356999999999998864
No 298
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=78.30 E-value=7.2 Score=22.12 Aligned_cols=18 Identities=17% Similarity=0.420 Sum_probs=15.0
Q ss_pred EEEEEchHHHHHHHHHhh
Q 038643 24 GMVGYCMGSALTIACSAS 41 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~ 41 (52)
.+-|+++||.+.+.+++-
T Consensus 100 av~G~a~GgG~~lal~cD 117 (256)
T TIGR03210 100 RVQGYAIGGGNVLVTICD 117 (256)
T ss_pred EECCEEehhhHHHHHhCC
Confidence 356999999999998854
No 299
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=78.26 E-value=8.9 Score=21.74 Aligned_cols=18 Identities=22% Similarity=0.504 Sum_probs=15.0
Q ss_pred EEEEEchHHHHHHHHHhh
Q 038643 24 GMVGYCMGSALTIACSAS 41 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~ 41 (52)
.+-|+++||...+.+++-
T Consensus 103 av~G~a~GgG~~lal~cD 120 (260)
T PRK07657 103 AINGIALGGGLELALACD 120 (260)
T ss_pred EEcCEeechHHHHHHhCC
Confidence 366999999999998854
No 300
>PF01734 Patatin: Patatin-like phospholipase This Prosite family is a subset of the Pfam family; InterPro: IPR002641 This domain is structurally and functionally related to the animal cytosolic phospholipase A2. This domain is found in the patatin glycoproteins from the total soluble protein in potato tubers []. Patatin is a storage protein but it also has the enzymatic activity of lipid acyl hydrolase, catalysing the cleavage of fatty acids from membrane lipids [].; GO: 0006629 lipid metabolic process; PDB: 3TU3_B 4AKX_B 1OXW_A.
Probab=78.11 E-value=5.9 Score=20.24 Aligned_cols=19 Identities=11% Similarity=0.008 Sum_probs=16.1
Q ss_pred EEEEEEchHHHHHHHHHhh
Q 038643 23 VGMVGYCMGSALTIACSAS 41 (52)
Q Consensus 23 i~l~G~S~GG~~a~~~a~~ 41 (52)
-.+.|-|.||.++..++..
T Consensus 29 d~i~GtS~Gal~a~~~~~~ 47 (204)
T PF01734_consen 29 DVISGTSAGALNAALLALG 47 (204)
T ss_dssp SEEEEECCHHHHHHHHHTC
T ss_pred cEEEEcChhhhhHHHHHhC
Confidence 3588999999999888865
No 301
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=77.98 E-value=9.5 Score=21.69 Aligned_cols=18 Identities=11% Similarity=0.322 Sum_probs=14.9
Q ss_pred EEEEEchHHHHHHHHHhh
Q 038643 24 GMVGYCMGSALTIACSAS 41 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~ 41 (52)
.+-|+++||.+.+.+++.
T Consensus 106 av~G~a~GgG~~lala~D 123 (262)
T PRK07468 106 RIQGQAFGGGVGLISVCD 123 (262)
T ss_pred EECCEEEhHHHHHHHhCC
Confidence 356999999999988854
No 302
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=77.84 E-value=10 Score=21.78 Aligned_cols=18 Identities=22% Similarity=0.536 Sum_probs=15.1
Q ss_pred EEEEEchHHHHHHHHHhh
Q 038643 24 GMVGYCMGSALTIACSAS 41 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~ 41 (52)
.+-|+|+||.+.+.+++.
T Consensus 119 aV~G~a~GgG~~LalacD 136 (277)
T PRK08258 119 AVDGVCAGAGAILAMASD 136 (277)
T ss_pred EECCeeehHHHHHHHhCC
Confidence 356999999999999864
No 303
>PRK09245 enoyl-CoA hydratase; Provisional
Probab=77.21 E-value=10 Score=21.57 Aligned_cols=18 Identities=22% Similarity=0.545 Sum_probs=15.0
Q ss_pred EEEEEchHHHHHHHHHhh
Q 038643 24 GMVGYCMGSALTIACSAS 41 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~ 41 (52)
.+-|+|+||.+.+.+++.
T Consensus 109 av~G~a~GgG~~lalacD 126 (266)
T PRK09245 109 AVNGPAIGAGCDLACMCD 126 (266)
T ss_pred EECCEeecHHHHHHHhCC
Confidence 466999999999998864
No 304
>PRK06210 enoyl-CoA hydratase; Provisional
Probab=77.20 E-value=7.4 Score=22.18 Aligned_cols=18 Identities=33% Similarity=0.484 Sum_probs=15.0
Q ss_pred EEEEEchHHHHHHHHHhh
Q 038643 24 GMVGYCMGSALTIACSAS 41 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~ 41 (52)
.+-|+|+||.+.+.+++-
T Consensus 114 av~G~a~GgG~~lala~D 131 (272)
T PRK06210 114 AINGACAGIGLTHALMCD 131 (272)
T ss_pred EECCeeehHHHHHHHhCC
Confidence 355999999999998864
No 305
>PLN02157 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=76.98 E-value=8.3 Score=23.73 Aligned_cols=19 Identities=16% Similarity=0.317 Sum_probs=15.4
Q ss_pred EEEEEchHHHHHHHHHhhc
Q 038643 24 GMVGYCMGSALTIACSASL 42 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~~ 42 (52)
.+-|++|||.+.+.+++.+
T Consensus 139 ~v~G~a~GGG~~Lal~cD~ 157 (401)
T PLN02157 139 ILNGVTMGGGTGVSIPGTF 157 (401)
T ss_pred EEeCeEeehhHHHHHhCCE
Confidence 3569999999999988643
No 306
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=76.78 E-value=11 Score=21.26 Aligned_cols=18 Identities=28% Similarity=0.499 Sum_probs=15.0
Q ss_pred EEEEEchHHHHHHHHHhh
Q 038643 24 GMVGYCMGSALTIACSAS 41 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~ 41 (52)
.+-|+++||.+.+.+++.
T Consensus 100 av~G~a~GgG~~lalacD 117 (257)
T PRK07658 100 AIHGAALGGGLELAMSCH 117 (257)
T ss_pred EEcCeeeeHHHHHHHhCC
Confidence 466999999999988864
No 307
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=76.76 E-value=11 Score=21.43 Aligned_cols=18 Identities=22% Similarity=0.453 Sum_probs=15.0
Q ss_pred EEEEEchHHHHHHHHHhh
Q 038643 24 GMVGYCMGSALTIACSAS 41 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~ 41 (52)
.+-|+++||.+.+.+++-
T Consensus 103 av~G~a~GgG~~lalacD 120 (257)
T PRK06495 103 AVNGPALGAGLGLVASCD 120 (257)
T ss_pred EECCeeehhHHHHHHhCC
Confidence 356999999999998854
No 308
>PLN02600 enoyl-CoA hydratase
Probab=76.59 E-value=10 Score=21.42 Aligned_cols=18 Identities=28% Similarity=0.416 Sum_probs=15.1
Q ss_pred EEEEEchHHHHHHHHHhh
Q 038643 24 GMVGYCMGSALTIACSAS 41 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~ 41 (52)
.+-|+++||.+.+.+++-
T Consensus 94 av~G~a~GgG~~lala~D 111 (251)
T PLN02600 94 VVEGAALGGGLELALSCD 111 (251)
T ss_pred EecCeecchhHHHHHhCC
Confidence 356999999999998864
No 309
>COG2885 OmpA Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane]
Probab=76.42 E-value=8.4 Score=20.80 Aligned_cols=27 Identities=19% Similarity=0.225 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHhcCCCcEEEEEEc
Q 038643 3 GVVADISASVDWLKANGSKKVGMVGYC 29 (52)
Q Consensus 3 ~~~~d~~~~~~~l~~~~~~~i~l~G~S 29 (52)
...+.+..+.++|++.+..+|.+.||.
T Consensus 97 ~~~~~L~~~a~~L~~~p~~~i~V~GHT 123 (190)
T COG2885 97 KAQATLDELAKYLKKNPITRILVEGHT 123 (190)
T ss_pred hHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 345667778888888777889999994
No 310
>PRK05869 enoyl-CoA hydratase; Validated
Probab=76.16 E-value=11 Score=20.97 Aligned_cols=18 Identities=39% Similarity=0.798 Sum_probs=15.2
Q ss_pred EEEEEchHHHHHHHHHhh
Q 038643 24 GMVGYCMGSALTIACSAS 41 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~ 41 (52)
.+-|+++||.+.+.+++-
T Consensus 105 av~G~a~GgG~~lalacD 122 (222)
T PRK05869 105 AITGYALGAGLTLALAAD 122 (222)
T ss_pred EEcCEeecHHHHHHHhCC
Confidence 366999999999998864
No 311
>TIGR02816 pfaB_fam PfaB family protein. The protein PfaB is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. The fairly permissive trusted cutoff set for this model allows detection of homologs encoded near homologs to other proteins of the locus: PfaA, PfaC, and/or PfaD. The likely role in every case is either polyunsaturated fatty acid or polyketide biosynthesis.
Probab=75.99 E-value=6.6 Score=25.13 Aligned_cols=25 Identities=24% Similarity=0.121 Sum_probs=19.1
Q ss_pred hcCCCcEEEEEEchHHHHHHHHHhh
Q 038643 17 ANGSKKVGMVGYCMGSALTIACSAS 41 (52)
Q Consensus 17 ~~~~~~i~l~G~S~GG~~a~~~a~~ 41 (52)
+.+.++-.++|||+|=..++..+.-
T Consensus 261 ~~GI~Pdav~GHSlGE~aAa~aAGv 285 (538)
T TIGR02816 261 EFAIKPDFALGYSKGEASMWASLGV 285 (538)
T ss_pred hcCCCCCEEeecCHHHHHHHHHhCC
Confidence 3345666899999999888887754
No 312
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=75.90 E-value=12 Score=21.11 Aligned_cols=18 Identities=17% Similarity=0.274 Sum_probs=14.6
Q ss_pred EEEEEchHHHHHHHHHhh
Q 038643 24 GMVGYCMGSALTIACSAS 41 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~ 41 (52)
.+-|+|+||...+.+++.
T Consensus 100 aV~G~a~GgG~~lalacD 117 (239)
T PLN02267 100 AVTGHASAAGFILALSHD 117 (239)
T ss_pred EECCcchHHHHHHHHHCC
Confidence 355999999998888754
No 313
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=75.51 E-value=9.8 Score=21.57 Aligned_cols=18 Identities=6% Similarity=0.211 Sum_probs=15.1
Q ss_pred EEEEEchHHHHHHHHHhh
Q 038643 24 GMVGYCMGSALTIACSAS 41 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~ 41 (52)
.+-|+++||...+.+++.
T Consensus 105 av~G~a~GgG~~lalacD 122 (262)
T PRK05995 105 RVHGDAYAGGMGLVAACD 122 (262)
T ss_pred EECCEEEhhHHHHHHhCC
Confidence 466999999999998864
No 314
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=75.33 E-value=12 Score=21.59 Aligned_cols=18 Identities=17% Similarity=0.538 Sum_probs=14.9
Q ss_pred EEEEEchHHHHHHHHHhh
Q 038643 24 GMVGYCMGSALTIACSAS 41 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~ 41 (52)
.+-|+++||.+.+.+++-
T Consensus 110 av~G~a~GgG~~lal~cD 127 (275)
T PRK09120 110 MVNGWCFGGGFSPLVACD 127 (275)
T ss_pred EEcCEEechhHHHHHhCC
Confidence 356999999999988854
No 315
>COG4425 Predicted membrane protein [Function unknown]
Probab=75.17 E-value=3.4 Score=26.40 Aligned_cols=30 Identities=17% Similarity=0.134 Sum_probs=22.1
Q ss_pred HHHHHHHHHhcC---CCcEEEEEEchHHHHHHH
Q 038643 8 ISASVDWLKANG---SKKVGMVGYCMGSALTIA 37 (52)
Q Consensus 8 ~~~~~~~l~~~~---~~~i~l~G~S~GG~~a~~ 37 (52)
++++.+|..+.+ ..|+.+.|.|+|++-...
T Consensus 381 f~aVy~yw~qLP~~sRPKLylhG~SLGa~~s~~ 413 (588)
T COG4425 381 FEAVYGYWTQLPKSSRPKLYLHGESLGAMGSEA 413 (588)
T ss_pred HHHHHHHHHhCCcCCCCceEEeccccccccCcc
Confidence 455667777765 578999999999875433
No 316
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=74.93 E-value=8.2 Score=23.47 Aligned_cols=34 Identities=24% Similarity=0.339 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEEchHHHHHHHHHhh
Q 038643 5 VADISASVDWLKANGSKKVGMVGYCMGSALTIACSAS 41 (52)
Q Consensus 5 ~~d~~~~~~~l~~~~~~~i~l~G~S~GG~~a~~~a~~ 41 (52)
+.|.....+++.+..++++.++| ||.+++.+|..
T Consensus 133 ~~~~~~l~~~l~~~~~~~vvViG---gG~ig~E~A~~ 166 (438)
T PRK13512 133 LEDTDAIDQFIKANQVDKALVVG---AGYISLEVLEN 166 (438)
T ss_pred HHHHHHHHHHHhhcCCCEEEEEC---CCHHHHHHHHH
Confidence 34555555666554468899999 67787777754
No 317
>cd07217 Pat17_PNPLA8_PNPLA9_like4 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=74.58 E-value=4.3 Score=24.31 Aligned_cols=18 Identities=17% Similarity=0.143 Sum_probs=15.6
Q ss_pred EEEEEchHHHHHHHHHhh
Q 038643 24 GMVGYCMGSALTIACSAS 41 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~ 41 (52)
.+.|.|.||.++..++..
T Consensus 44 lIaGTStGgIIAa~la~g 61 (344)
T cd07217 44 FVGGTSTGSIIAACIALG 61 (344)
T ss_pred EEEEecHHHHHHHHHHcC
Confidence 578999999999999853
No 318
>TIGR03222 benzo_boxC benzoyl-CoA-dihydrodiol lyase. In the presence of O2, the benzoyl-CoA oxygenase/reductase BoxBA BoxAB converts benzoyl-CoA to 2,3-dihydro-2,3-dihydroxybenzoyl-CoA. Members of this family, BoxC, homologous to enoyl-CoA hydratases/isomerases, hydrolyze this compound to 3,4-dehydroadipyl-CoA semialdehyde + HCOOH.
Probab=74.22 E-value=12 Score=23.98 Aligned_cols=29 Identities=17% Similarity=0.415 Sum_probs=19.4
Q ss_pred HHHHHhcCCCcEEEE--EEchHHH-HHHHHHh
Q 038643 12 VDWLKANGSKKVGMV--GYCMGSA-LTIACSA 40 (52)
Q Consensus 12 ~~~l~~~~~~~i~l~--G~S~GG~-~a~~~a~ 40 (52)
+..+...+..-|..+ |+++||. +.+.+++
T Consensus 358 ~~~l~~~~kpviAav~~G~a~GgG~~eLalac 389 (546)
T TIGR03222 358 LARLDVSSRSLFALIEPGSCFAGTLAELAFAA 389 (546)
T ss_pred HHHHHcCCCCEEEEECCCeEeHHHHHHHHHhC
Confidence 333444344456677 9999999 8887764
No 319
>PRK08260 enoyl-CoA hydratase; Provisional
Probab=73.92 E-value=9.3 Score=22.17 Aligned_cols=18 Identities=17% Similarity=0.287 Sum_probs=15.2
Q ss_pred EEEEEchHHHHHHHHHhh
Q 038643 24 GMVGYCMGSALTIACSAS 41 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~ 41 (52)
.+-|+|+||.+.+.+++-
T Consensus 119 av~G~a~GgG~~LalacD 136 (296)
T PRK08260 119 AVNGPAVGVGATMTLAMD 136 (296)
T ss_pred EECCeeehHhHHHHHhCC
Confidence 466999999999999864
No 320
>COG2830 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.45 E-value=2.6 Score=23.49 Aligned_cols=32 Identities=16% Similarity=0.251 Sum_probs=22.4
Q ss_pred CCcEEEEEEchHHHHHHHHHhhcCCceeEeeeC
Q 038643 20 SKKVGMVGYCMGSALTIACSASLMERKHTFRMN 52 (52)
Q Consensus 20 ~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~~~ 52 (52)
.+.|-++.||||-.+|-++....+ .+.+..+|
T Consensus 56 y~hirlvAwSMGVwvAeR~lqg~~-lksatAiN 87 (214)
T COG2830 56 YRHIRLVAWSMGVWVAERVLQGIR-LKSATAIN 87 (214)
T ss_pred hhhhhhhhhhHHHHHHHHHHhhcc-ccceeeec
Confidence 367889999999999988875543 34444443
No 321
>PRK05870 enoyl-CoA hydratase; Provisional
Probab=73.42 E-value=14 Score=20.82 Aligned_cols=18 Identities=28% Similarity=0.497 Sum_probs=14.9
Q ss_pred EEEEEchHHHHHHHHHhh
Q 038643 24 GMVGYCMGSALTIACSAS 41 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~ 41 (52)
.+-|+++||...+.+++-
T Consensus 101 av~G~a~GgG~~lal~cD 118 (249)
T PRK05870 101 AVNGAAVGAGLNLALAAD 118 (249)
T ss_pred EECCEeEchhHHHHHhCC
Confidence 456999999999988864
No 322
>PRK06144 enoyl-CoA hydratase; Provisional
Probab=73.35 E-value=13 Score=21.15 Aligned_cols=18 Identities=28% Similarity=0.676 Sum_probs=15.1
Q ss_pred EEEEEchHHHHHHHHHhh
Q 038643 24 GMVGYCMGSALTIACSAS 41 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~ 41 (52)
.+-|+++||.+.+.+++-
T Consensus 108 av~G~a~GgG~~lala~D 125 (262)
T PRK06144 108 AIAGACVGGGAAIAAACD 125 (262)
T ss_pred EECCeeeehHHHHHHhCC
Confidence 466999999999998864
No 323
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=73.28 E-value=10 Score=21.43 Aligned_cols=18 Identities=22% Similarity=0.741 Sum_probs=15.1
Q ss_pred EEEEEchHHHHHHHHHhh
Q 038643 24 GMVGYCMGSALTIACSAS 41 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~ 41 (52)
.+-|+++||.+.+.+++-
T Consensus 100 av~G~a~GgG~~Lal~cD 117 (249)
T PRK07938 100 AVHGFCLGGGIGLVGNAD 117 (249)
T ss_pred EEcCEEeehHHHHHHhCC
Confidence 366999999999998854
No 324
>PRK06213 enoyl-CoA hydratase; Provisional
Probab=73.23 E-value=14 Score=20.58 Aligned_cols=19 Identities=16% Similarity=0.175 Sum_probs=15.3
Q ss_pred EEEEEchHHHHHHHHHhhc
Q 038643 24 GMVGYCMGSALTIACSASL 42 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~~ 42 (52)
.+-|+++||.+.+.+++.+
T Consensus 97 av~G~a~GgG~~lal~~D~ 115 (229)
T PRK06213 97 ACTGHAIAKGAFLLLSADY 115 (229)
T ss_pred EEcCeeeHHHHHHHHhCCe
Confidence 3569999999998888643
No 325
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=73.17 E-value=3.4 Score=22.33 Aligned_cols=27 Identities=26% Similarity=0.454 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHhcC-CCcEEEEEEchHH
Q 038643 5 VADISASVDWLKANG-SKKVGMVGYCMGS 32 (52)
Q Consensus 5 ~~d~~~~~~~l~~~~-~~~i~l~G~S~GG 32 (52)
..|+..+++++...- ..+ .++=||+||
T Consensus 88 ~~~l~~~v~~i~~~~~~g~-kVvVHC~~G 115 (180)
T COG2453 88 LEDLDKIVDFIEEALSKGK-KVVVHCQGG 115 (180)
T ss_pred HHHHHHHHHHHHHHHhcCC-eEEEEcCCC
Confidence 478888888887763 222 344467766
No 326
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=73.06 E-value=16 Score=21.23 Aligned_cols=18 Identities=22% Similarity=0.492 Sum_probs=14.9
Q ss_pred EEEEEchHHHHHHHHHhh
Q 038643 24 GMVGYCMGSALTIACSAS 41 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~ 41 (52)
.+-|+|+||.+.+.+++-
T Consensus 124 aVnG~a~GgG~~lalacD 141 (288)
T PRK08290 124 QVQGACIAGGLMLAWVCD 141 (288)
T ss_pred EECCEeeHHHHHHHHhCC
Confidence 366999999999988864
No 327
>PRK09967 putative outer membrane lipoprotein; Provisional
Probab=73.00 E-value=12 Score=19.99 Aligned_cols=28 Identities=18% Similarity=0.108 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHHHHhcCCCcEEEEEEch
Q 038643 3 GVVADISASVDWLKANGSKKVGMVGYCM 30 (52)
Q Consensus 3 ~~~~d~~~~~~~l~~~~~~~i~l~G~S~ 30 (52)
.....+..+.+++++.+..+|.+.||+=
T Consensus 66 ~~~~~L~~ia~~l~~~~~~~v~I~GhTD 93 (160)
T PRK09967 66 ESQQQIQTMAAKLASTGLTHARMDGHTD 93 (160)
T ss_pred HHHHHHHHHHHHHHhCCCceEEEEEEcC
Confidence 4556677788888776656799999963
No 328
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=72.99 E-value=13 Score=21.02 Aligned_cols=18 Identities=28% Similarity=0.444 Sum_probs=15.1
Q ss_pred EEEEEchHHHHHHHHHhh
Q 038643 24 GMVGYCMGSALTIACSAS 41 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~ 41 (52)
.+-|+++||...+.+++-
T Consensus 103 av~G~a~GgG~~la~acD 120 (251)
T PRK06023 103 GVDGLAIGIGTTIHLHCD 120 (251)
T ss_pred EeCCceecHHHHHHHhCC
Confidence 466999999999998864
No 329
>PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins.
Probab=72.94 E-value=14 Score=20.46 Aligned_cols=31 Identities=10% Similarity=0.141 Sum_probs=20.2
Q ss_pred HHHHHHHHhcCC---CcEEEEEEchHHHHHHHHH
Q 038643 9 SASVDWLKANGS---KKVGMVGYCMGSALTIACS 39 (52)
Q Consensus 9 ~~~~~~l~~~~~---~~i~l~G~S~GG~~a~~~a 39 (52)
+.+++.+.+... .++.+-.+|.||.......
T Consensus 52 ~~l~~~l~~~~~~~~~~il~H~FSnGG~~~~~~l 85 (240)
T PF05705_consen 52 DKLLELLSDSQSASPPPILFHSFSNGGSFLYSQL 85 (240)
T ss_pred HHHHHHhhhhccCCCCCEEEEEEECchHHHHHHH
Confidence 344455554432 3899999999887766554
No 330
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=72.58 E-value=15 Score=20.78 Aligned_cols=19 Identities=21% Similarity=0.571 Sum_probs=15.5
Q ss_pred EEEEEchHHHHHHHHHhhc
Q 038643 24 GMVGYCMGSALTIACSASL 42 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~~ 42 (52)
.+-|+++||.+.+.+++.+
T Consensus 100 av~G~a~GgG~~lalacD~ 118 (257)
T PRK05862 100 AVAGYALGGGCELAMMCDI 118 (257)
T ss_pred EEccEEeHHHHHHHHHCCE
Confidence 3569999999999988643
No 331
>PRK05617 3-hydroxyisobutyryl-CoA hydrolase; Provisional
Probab=72.47 E-value=11 Score=22.47 Aligned_cols=18 Identities=33% Similarity=0.436 Sum_probs=14.8
Q ss_pred EEEEEchHHHHHHHHHhh
Q 038643 24 GMVGYCMGSALTIACSAS 41 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~ 41 (52)
.+-|+++||...+.+++.
T Consensus 106 aVnG~a~GgG~~LalacD 123 (342)
T PRK05617 106 LMDGIVMGGGVGISAHGS 123 (342)
T ss_pred EEcCEEEccHhHHhhhCC
Confidence 356999999999988754
No 332
>TIGR01929 menB naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches.
Probab=72.46 E-value=12 Score=21.34 Aligned_cols=18 Identities=17% Similarity=0.388 Sum_probs=15.1
Q ss_pred EEEEEchHHHHHHHHHhh
Q 038643 24 GMVGYCMGSALTIACSAS 41 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~ 41 (52)
.+-|+++||.+.+.+++-
T Consensus 103 av~G~a~GgG~~lalacD 120 (259)
T TIGR01929 103 MVNGYAIGGGHVLHVVCD 120 (259)
T ss_pred EEcCEEehHHHHHHHhCC
Confidence 466999999999998864
No 333
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=72.44 E-value=15 Score=20.91 Aligned_cols=18 Identities=33% Similarity=0.447 Sum_probs=14.9
Q ss_pred EEEEEchHHHHHHHHHhh
Q 038643 24 GMVGYCMGSALTIACSAS 41 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~ 41 (52)
.+-|++.||.+.+.+++.
T Consensus 104 av~G~a~GgG~~lalacD 121 (260)
T PRK07659 104 AIHGPAAGLGLSIALTAD 121 (260)
T ss_pred EecCceecHHHHHHHhCC
Confidence 356999999999998864
No 334
>cd07213 Pat17_PNPLA8_PNPLA9_like1 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=72.33 E-value=5.3 Score=23.06 Aligned_cols=32 Identities=13% Similarity=0.188 Sum_probs=21.7
Q ss_pred HHHHHHhcCC---CcE-EEEEEchHHHHHHHHHhhc
Q 038643 11 SVDWLKANGS---KKV-GMVGYCMGSALTIACSASL 42 (52)
Q Consensus 11 ~~~~l~~~~~---~~i-~l~G~S~GG~~a~~~a~~~ 42 (52)
+++.++++.+ +.+ .+.|.|.||.++..++...
T Consensus 20 vL~~Le~~~~~~~~~fD~i~GTSaGaiia~~la~g~ 55 (288)
T cd07213 20 LLKRLAEEFPSFLDQIDLFAGTSAGSLIALGLALGY 55 (288)
T ss_pred HHHHHHHhCcccccceeEEEEeCHHHHHHHHHHcCc
Confidence 4455555431 122 5789999999999998643
No 335
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=72.27 E-value=13 Score=19.77 Aligned_cols=33 Identities=15% Similarity=0.188 Sum_probs=19.7
Q ss_pred HHHHHHHHhcCCCcE-EEEEEchHHHHHHHHHhh
Q 038643 9 SASVDWLKANGSKKV-GMVGYCMGSALTIACSAS 41 (52)
Q Consensus 9 ~~~~~~l~~~~~~~i-~l~G~S~GG~~a~~~a~~ 41 (52)
..++..+...+..-| .+-|+++||...+.+++.
T Consensus 83 ~~~~~~i~~~~~p~Ia~v~G~a~g~G~~la~~~D 116 (195)
T cd06558 83 QELLRALLRLPKPVIAAVNGAALGGGLELALACD 116 (195)
T ss_pred HHHHHHHHcCCCCEEEEECCeeecHHHHHHHhCC
Confidence 344444443332223 356999999988888754
No 336
>PLN02752 [acyl-carrier protein] S-malonyltransferase
Probab=72.18 E-value=4 Score=24.03 Aligned_cols=17 Identities=12% Similarity=0.257 Sum_probs=14.4
Q ss_pred EEEEEchHHHHHHHHHh
Q 038643 24 GMVGYCMGSALTIACSA 40 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~ 40 (52)
.++|||+|=..++..+.
T Consensus 127 ~~~GHSlGE~aA~~~AG 143 (343)
T PLN02752 127 VCAGLSLGEYTALVFAG 143 (343)
T ss_pred eeeeccHHHHHHHHHhC
Confidence 57999999988888774
No 337
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=71.96 E-value=16 Score=20.81 Aligned_cols=18 Identities=22% Similarity=0.289 Sum_probs=14.9
Q ss_pred EEEEEchHHHHHHHHHhh
Q 038643 24 GMVGYCMGSALTIACSAS 41 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~ 41 (52)
.+-|+++||...+.+++-
T Consensus 102 av~G~a~GgG~~lalacD 119 (261)
T PRK11423 102 MVEGSVWGGAFELIMSCD 119 (261)
T ss_pred EEecEEechHHHHHHhCC
Confidence 466999999999988853
No 338
>PLN02988 3-hydroxyisobutyryl-CoA hydrolase
Probab=71.37 E-value=11 Score=22.96 Aligned_cols=19 Identities=16% Similarity=0.314 Sum_probs=15.1
Q ss_pred EEEEEchHHHHHHHHHhhc
Q 038643 24 GMVGYCMGSALTIACSASL 42 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~~ 42 (52)
.+-|++|||.+.+.+++.+
T Consensus 111 ~v~G~a~GGG~~Lal~~D~ 129 (381)
T PLN02988 111 ILNGIVMGGGAGVSVHGRF 129 (381)
T ss_pred EecCeEeehhhHHhhcCCe
Confidence 3559999999999888543
No 339
>cd05015 SIS_PGI_1 Phosphoglucose isomerase (PGI) contains two SIS (Sugar ISomerase) domains. This classification is based on the alignment of the first SIS domain. PGI is a multifunctional enzyme which as an intracellular dimer catalyzes the reversible isomerization of glucose 6-phosphate to fructose 6-phosphate. As an extracellular protein, PGI also has functions equivalent to neuroleukin (NLK), autocrine motility factor (AMF), and maturation factor (MF). Evidence suggests that PGI, NLK, AMF, and MF are closely related or identical. NLK is a neurotrophic growth factor that promotes regeneration and survival of neurons. The dimeric form of NLK has isomerase function, whereas its monomeric form carries out neurotrophic activity. AMF is a cytokine that stimulates cell migration and metastasis. MF mediates the differentiation of human myeloid leukemic HL-60 cells to terminal monocytic cells.
Probab=71.27 E-value=9 Score=20.22 Aligned_cols=25 Identities=12% Similarity=0.218 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHHHh-cCCCcEEEEE
Q 038643 3 GVVADISASVDWLKA-NGSKKVGMVG 27 (52)
Q Consensus 3 ~~~~d~~~~~~~l~~-~~~~~i~l~G 27 (52)
.....+...++.+++ .+.++|.++|
T Consensus 2 ~~~~~i~~~~~~i~~~~~~~~iv~~G 27 (158)
T cd05015 2 AELERIKEFAEKVRSGKKITDVVVIG 27 (158)
T ss_pred hHHHHHHHHHHHHhcCCCCCEEEEEe
Confidence 456778888888876 3467888776
No 340
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=70.94 E-value=15 Score=24.25 Aligned_cols=19 Identities=11% Similarity=0.310 Sum_probs=15.7
Q ss_pred EEEEEchHHHHHHHHHhhc
Q 038643 24 GMVGYCMGSALTIACSASL 42 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~~ 42 (52)
.+-|+|+||.+.+.+++.+
T Consensus 108 ai~G~alGGGleLalacD~ 126 (714)
T TIGR02437 108 AINGIALGGGCECVLATDF 126 (714)
T ss_pred EECCeeecHHHHHHHhCCE
Confidence 3569999999999998654
No 341
>PRK06127 enoyl-CoA hydratase; Provisional
Probab=70.79 E-value=17 Score=20.74 Aligned_cols=18 Identities=33% Similarity=0.798 Sum_probs=14.9
Q ss_pred EEEEEchHHHHHHHHHhh
Q 038643 24 GMVGYCMGSALTIACSAS 41 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~ 41 (52)
.+-|+++||.+.+.+++.
T Consensus 112 av~G~a~GgG~~LalacD 129 (269)
T PRK06127 112 CIRGYCIGGGMGIALACD 129 (269)
T ss_pred EECCEEecHHHHHHHhCC
Confidence 356999999999988864
No 342
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=70.64 E-value=11 Score=21.54 Aligned_cols=18 Identities=22% Similarity=0.350 Sum_probs=15.0
Q ss_pred EEEEEchHHHHHHHHHhh
Q 038643 24 GMVGYCMGSALTIACSAS 41 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~ 41 (52)
.+-|+|+||.+.+.+++.
T Consensus 107 aV~G~a~GgG~~lal~~D 124 (265)
T PRK05674 107 VVQGAAFGGALGLISCCD 124 (265)
T ss_pred EEcCEEEechhhHhhhcC
Confidence 466999999999988864
No 343
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=70.57 E-value=14 Score=27.05 Aligned_cols=30 Identities=17% Similarity=0.348 Sum_probs=22.8
Q ss_pred HHHHhc-CCCcEEEEEEchHHHHHHHHHhhc
Q 038643 13 DWLKAN-GSKKVGMVGYCMGSALTIACSASL 42 (52)
Q Consensus 13 ~~l~~~-~~~~i~l~G~S~GG~~a~~~a~~~ 42 (52)
+.+++. |..+.-++|+|+|..++..+|...
T Consensus 2173 rqirkvQP~GPYrl~GYSyG~~l~f~ma~~L 2203 (2376)
T KOG1202|consen 2173 RQIRKVQPEGPYRLAGYSYGACLAFEMASQL 2203 (2376)
T ss_pred HHHHhcCCCCCeeeeccchhHHHHHHHHHHH
Confidence 444443 457888999999999999988653
No 344
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=70.41 E-value=9.1 Score=21.62 Aligned_cols=18 Identities=28% Similarity=0.464 Sum_probs=14.9
Q ss_pred EEEEEchHHHHHHHHHhh
Q 038643 24 GMVGYCMGSALTIACSAS 41 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~ 41 (52)
.+-|+|+||.+.+.+++-
T Consensus 100 av~G~a~GgG~~lal~cD 117 (249)
T PRK07110 100 AMQGHAIGGGLVLGLYAD 117 (249)
T ss_pred EecCceechHHHHHHhCC
Confidence 356999999999998854
No 345
>PRK07112 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=70.08 E-value=11 Score=21.37 Aligned_cols=18 Identities=6% Similarity=0.148 Sum_probs=15.2
Q ss_pred EEEEEchHHHHHHHHHhh
Q 038643 24 GMVGYCMGSALTIACSAS 41 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~ 41 (52)
.+-|+++||.+.+.+++-
T Consensus 102 av~G~a~GgG~~lala~D 119 (255)
T PRK07112 102 HVRGKVNAGGIGFVAASD 119 (255)
T ss_pred EEecEEEcchhHHHHcCC
Confidence 467999999999998854
No 346
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]
Probab=69.98 E-value=29 Score=23.00 Aligned_cols=36 Identities=28% Similarity=0.309 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEE------chHHHHHHHHHhhc
Q 038643 6 ADISASVDWLKANGSKKVGMVGY------CMGSALTIACSASL 42 (52)
Q Consensus 6 ~d~~~~~~~l~~~~~~~i~l~G~------S~GG~~a~~~a~~~ 42 (52)
+++..+++.+-.. .++++++|| |.|+++++..-+..
T Consensus 324 Rvis~al~d~i~e-~d~VfImGHk~pDmDalGsAig~~~~A~~ 365 (655)
T COG3887 324 RVISTALSDIIKE-SDNVFIMGHKFPDMDALGSAIGMQKFASM 365 (655)
T ss_pred HHHHHHHHHHHhh-cCcEEEEccCCCChHHHHHHHHHHHHHHh
Confidence 4445555333332 689999999 67999988766544
No 347
>cd07219 Pat_PNPLA1 Patatin-like phospholipase domain containing protein 1. Members of this family share a patatin domain, initially discovered in potato tubers. Some members of PNPLA1 subfamily do not have the lipase consensus sequence Gly-X-Ser-X-Gly which is essential for hydrolase activity. This family includes PNPLA1 from Homo sapiens and Gallus gallus. Currently, there is no literature available on the physiological role, structure, or enzymatic activity of PNPLA1. It is expressed in various human tissues in low mRNA levels.
Probab=69.83 E-value=13 Score=22.97 Aligned_cols=32 Identities=19% Similarity=0.248 Sum_probs=22.1
Q ss_pred HHHHHHHhcCCC----cEEEEEEchHHHHHHHHHhh
Q 038643 10 ASVDWLKANGSK----KVGMVGYCMGSALTIACSAS 41 (52)
Q Consensus 10 ~~~~~l~~~~~~----~i~l~G~S~GG~~a~~~a~~ 41 (52)
.+++.|.++.++ .-.+.|-|.|+.++..+++.
T Consensus 29 GVl~aL~E~gp~ll~~~d~IaGtSAGALvAAl~asG 64 (382)
T cd07219 29 GVVDALRDLAPRMLETAHRVAGTSAGSVIAALVVCG 64 (382)
T ss_pred HHHHHHHhcCCcccccCCeEEEEcHHHHHHHHHHhC
Confidence 345666665322 12489999999999988864
No 348
>PRK08184 benzoyl-CoA-dihydrodiol lyase; Provisional
Probab=69.81 E-value=17 Score=23.36 Aligned_cols=27 Identities=19% Similarity=0.414 Sum_probs=17.6
Q ss_pred HHHhcCCCcEEEE--EEchHHH-HHHHHHh
Q 038643 14 WLKANGSKKVGMV--GYCMGSA-LTIACSA 40 (52)
Q Consensus 14 ~l~~~~~~~i~l~--G~S~GG~-~a~~~a~ 40 (52)
.+...+..-|..+ |+|+||. +.+.+++
T Consensus 364 ~l~~~~kPvIAaV~~G~a~GgG~~eLalac 393 (550)
T PRK08184 364 RLDVTSRSLFALIEPGSCFAGTLAELALAA 393 (550)
T ss_pred HHHhCCCCEEEEECCCceehhHHHHHHHHC
Confidence 3333333445566 9999999 7777764
No 349
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=69.59 E-value=13 Score=21.17 Aligned_cols=18 Identities=17% Similarity=0.313 Sum_probs=15.1
Q ss_pred EEEEEchHHHHHHHHHhh
Q 038643 24 GMVGYCMGSALTIACSAS 41 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~ 41 (52)
.+-|+++||.+.+.+++.
T Consensus 100 aV~G~a~GgG~~lalacD 117 (258)
T PRK06190 100 AINGAAVTGGLELALACD 117 (258)
T ss_pred EECCEeecHHHHHHHhCC
Confidence 466999999999998864
No 350
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=69.24 E-value=15 Score=21.95 Aligned_cols=33 Identities=15% Similarity=0.253 Sum_probs=24.2
Q ss_pred HHHHHHHHhcC----CCcEEEEEEc--hHHHHHHHHHhh
Q 038643 9 SASVDWLKANG----SKKVGMVGYC--MGSALTIACSAS 41 (52)
Q Consensus 9 ~~~~~~l~~~~----~~~i~l~G~S--~GG~~a~~~a~~ 41 (52)
.++++.|+..+ .++++++|.| ||--++..+..+
T Consensus 144 ~aii~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~ 182 (301)
T PRK14194 144 SGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQA 182 (301)
T ss_pred HHHHHHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHC
Confidence 34555555542 5889999997 899999988754
No 351
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=69.04 E-value=19 Score=20.40 Aligned_cols=18 Identities=17% Similarity=0.344 Sum_probs=15.0
Q ss_pred EEEEEchHHHHHHHHHhh
Q 038643 24 GMVGYCMGSALTIACSAS 41 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~ 41 (52)
.+-|+++||.+.+.+++-
T Consensus 99 av~G~a~GgG~~lala~D 116 (256)
T TIGR02280 99 AVNGVAAGAGANLALACD 116 (256)
T ss_pred EECCeeehHHHHHHHhCC
Confidence 466999999999998854
No 352
>PF08250 Sperm_act_pep: Sperm-activating peptides; InterPro: IPR013254 The sperm-activating peptides (SAPs) are isolated in egg-conditioned media (egg jelly) of sea urchins. SAPs have several effects on sea urchin spermatozoa: stimulate sperm respiration and motility through intracellular alkalinization, transient elevation of cAMP, cGMP and Ca2+ levels in sperm cells [, ].
Probab=68.84 E-value=0.9 Score=13.69 Aligned_cols=6 Identities=33% Similarity=1.198 Sum_probs=3.5
Q ss_pred EEchHH
Q 038643 27 GYCMGS 32 (52)
Q Consensus 27 G~S~GG 32 (52)
|+++||
T Consensus 1 gf~l~G 6 (10)
T PF08250_consen 1 GFSLGG 6 (10)
T ss_pred Cccccc
Confidence 456655
No 353
>COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]
Probab=68.62 E-value=8.3 Score=24.60 Aligned_cols=39 Identities=10% Similarity=0.068 Sum_probs=27.9
Q ss_pred hHHHHHHHHHHHHHhc----C--CCcEEEEEEchHHHHHHHHHhh
Q 038643 3 GVVADISASVDWLKAN----G--SKKVGMVGYCMGSALTIACSAS 41 (52)
Q Consensus 3 ~~~~d~~~~~~~l~~~----~--~~~i~l~G~S~GG~~a~~~a~~ 41 (52)
+.-+|+..+.+.+.+. . ..+.+++|-|.||.-+-.+|..
T Consensus 174 ~~~~D~~~~~~~f~~~fp~~~r~~~~~~L~GESYgg~yip~~A~~ 218 (498)
T COG2939 174 GAGKDVYSFLRLFFDKFPHYARLLSPKFLAGESYGGHYIPVFAHE 218 (498)
T ss_pred ccchhHHHHHHHHHHHHHHHhhhcCceeEeeccccchhhHHHHHH
Confidence 4456777766655443 2 3488999999999988888754
No 354
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=68.30 E-value=13 Score=21.00 Aligned_cols=30 Identities=27% Similarity=0.393 Sum_probs=20.1
Q ss_pred HHHHHHhcCCCcE--EEEEEchHHHHHHHHHhh
Q 038643 11 SVDWLKANGSKKV--GMVGYCMGSALTIACSAS 41 (52)
Q Consensus 11 ~~~~l~~~~~~~i--~l~G~S~GG~~a~~~a~~ 41 (52)
+...+...+ +++ .+-|+++||.+.+.+++.
T Consensus 90 ~~~~l~~~~-kPvIAav~G~a~GgG~eLal~~D 121 (257)
T COG1024 90 LLRALADLP-KPVIAAVNGYALGGGLELALACD 121 (257)
T ss_pred HHHHHHhCC-CCEEEEEcceEeechhhhhhcCC
Confidence 444444443 443 366999999999988854
No 355
>PLN02874 3-hydroxyisobutyryl-CoA hydrolase-like protein
Probab=68.08 E-value=15 Score=22.27 Aligned_cols=18 Identities=17% Similarity=0.246 Sum_probs=15.0
Q ss_pred EEEEEchHHHHHHHHHhh
Q 038643 24 GMVGYCMGSALTIACSAS 41 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~ 41 (52)
.+-|+++||.+.+.+++.
T Consensus 111 aV~G~a~GgG~~LalacD 128 (379)
T PLN02874 111 LVHGLVMGGGAGLMVPMK 128 (379)
T ss_pred EecCeEEecHHHHHHhCC
Confidence 355999999999998864
No 356
>cd07020 Clp_protease_NfeD_1 Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentially c
Probab=68.04 E-value=17 Score=19.65 Aligned_cols=15 Identities=13% Similarity=0.045 Sum_probs=10.2
Q ss_pred EEchHHHHHHHHHhh
Q 038643 27 GYCMGSALTIACSAS 41 (52)
Q Consensus 27 G~S~GG~~a~~~a~~ 41 (52)
|++.||...+.+++.
T Consensus 70 G~AasgG~~iala~D 84 (187)
T cd07020 70 ARAASAGTYILLAAH 84 (187)
T ss_pred CCchhHHHHHHHhCC
Confidence 777777776666643
No 357
>COG4287 PqaA PhoPQ-activated pathogenicity-related protein [General function prediction only]
Probab=67.61 E-value=9.7 Score=23.95 Aligned_cols=40 Identities=13% Similarity=-0.118 Sum_probs=30.8
Q ss_pred HHHHHhcCCCcEEEEEEchHHHHHHHHHhhcCCceeEeee
Q 038643 12 VDWLKANGSKKVGMVGYCMGSALTIACSASLMERKHTFRM 51 (52)
Q Consensus 12 ~~~l~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~~ 51 (52)
-+.|.+...+.+.+.|-|-=|..++..|..+|+..+.++|
T Consensus 225 q~eL~q~~Ik~F~VTGaSKRgWttwLTAIaDprv~aIvp~ 264 (507)
T COG4287 225 QDELEQVEIKGFMVTGASKRGWTTWLTAIADPRVFAIVPF 264 (507)
T ss_pred HhhhhheeeeeEEEeccccchHHHHHHHhcCcchhhhhhh
Confidence 3444433467888999999999999999999987776654
No 358
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=67.45 E-value=19 Score=23.88 Aligned_cols=19 Identities=26% Similarity=0.658 Sum_probs=16.1
Q ss_pred EEEEEchHHHHHHHHHhhc
Q 038643 24 GMVGYCMGSALTIACSASL 42 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~~ 42 (52)
.+-|+|+||.+.+.+++.+
T Consensus 114 av~G~a~GgG~eLALacD~ 132 (737)
T TIGR02441 114 AISGSCLGGGLELALACHY 132 (737)
T ss_pred EECCEeecHHHHHHHhCCE
Confidence 4669999999999998764
No 359
>TIGR03200 dearomat_oah 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase. Members of this protein family are 6-oxocyclohex-1-ene-1-carbonyl-CoA hydrolase, a ring-hydrolyzing enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=67.18 E-value=23 Score=21.73 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=14.8
Q ss_pred EEEEEchHHHHHHHHHhh
Q 038643 24 GMVGYCMGSALTIACSAS 41 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~ 41 (52)
.+-|+|+||.+.+.+++-
T Consensus 130 AVnG~AiGGGleLALaCD 147 (360)
T TIGR03200 130 RVNGMRIGGGQEIGMAAD 147 (360)
T ss_pred EECCEeeeHHHHHHHhCC
Confidence 355999999999988854
No 360
>PLN03214 probable enoyl-CoA hydratase/isomerase; Provisional
Probab=66.97 E-value=21 Score=20.60 Aligned_cols=19 Identities=11% Similarity=0.331 Sum_probs=15.4
Q ss_pred EEEEEchHHHHHHHHHhhc
Q 038643 24 GMVGYCMGSALTIACSASL 42 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~~ 42 (52)
.+-|+++||.+.+.+++-+
T Consensus 113 aV~G~a~GgG~~lalacD~ 131 (278)
T PLN03214 113 AIRGACPAGGCAVSLCCDY 131 (278)
T ss_pred EEcCcccchHHHHHHhCCE
Confidence 3669999999999988643
No 361
>TIGR01001 metA homoserine O-succinyltransferase. The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.
Probab=66.88 E-value=6.5 Score=23.49 Aligned_cols=33 Identities=12% Similarity=0.254 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEchHHHHHHHHH
Q 038643 4 VVADISASVDWLKANGSKKVGMVGYCMGSALTIACS 39 (52)
Q Consensus 4 ~~~d~~~~~~~l~~~~~~~i~l~G~S~GG~~a~~~a 39 (52)
-++++...++|.+++- ...+.-|||+..++.+-
T Consensus 120 YW~El~~I~dwsk~~v---~Stl~iCWaAqAaLy~~ 152 (300)
T TIGR01001 120 YWEELTEIMEWSKHNV---TSTMFICWAAQAGLKYF 152 (300)
T ss_pred cHHHHHHHHHHHHHcC---cchHHHHHHHHHHHHHH
Confidence 4678899999998753 34566799999988875
No 362
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=66.52 E-value=14 Score=20.89 Aligned_cols=18 Identities=39% Similarity=0.735 Sum_probs=15.0
Q ss_pred EEEEEchHHHHHHHHHhh
Q 038643 24 GMVGYCMGSALTIACSAS 41 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~ 41 (52)
.+-|+++||.+.+.+++-
T Consensus 108 av~G~a~GgG~~lalacD 125 (262)
T PRK07509 108 ALEGVCFGGGLQIALGAD 125 (262)
T ss_pred EECCeeecchHHHHHhCC
Confidence 356999999999998864
No 363
>KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism]
Probab=66.35 E-value=4.4 Score=26.83 Aligned_cols=38 Identities=13% Similarity=0.288 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHhcC------CCcEEEEEEchHHHHHHHHHh
Q 038643 3 GVVADISASVDWLKANG------SKKVGMVGYCMGSALTIACSA 40 (52)
Q Consensus 3 ~~~~d~~~~~~~l~~~~------~~~i~l~G~S~GG~~a~~~a~ 40 (52)
...+++.-+.-|+.+.. .+||++.|-|-||.+.+..+.
T Consensus 445 RaleEv~fAYcW~inn~allG~TgEriv~aGDSAGgNL~~~VaL 488 (880)
T KOG4388|consen 445 RALEEVFFAYCWAINNCALLGSTGERIVLAGDSAGGNLCFTVAL 488 (880)
T ss_pred cHHHHHHHHHHHHhcCHHHhCcccceEEEeccCCCcceeehhHH
Confidence 45677778888887763 589999999999987655553
No 364
>COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=66.02 E-value=3.2 Score=23.92 Aligned_cols=28 Identities=21% Similarity=0.406 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEEchHH
Q 038643 5 VADISASVDWLKANGSKKVGMVGYCMGS 32 (52)
Q Consensus 5 ~~d~~~~~~~l~~~~~~~i~l~G~S~GG 32 (52)
+.+++.++.|--.-..+++.+.||-||=
T Consensus 40 vnevR~mlgfTGtYKGk~iSvmg~GmGi 67 (236)
T COG0813 40 VNEVRGMLGFTGTYKGKKISVMGHGMGI 67 (236)
T ss_pred hhhhcchhcccceecCcEEEEEEecCCC
Confidence 3444444444433346899999999984
No 365
>PF00691 OmpA: OmpA family; InterPro: IPR006665 This entry represents domain with a beta/alpha/beta/alpha-beta(2) structure found in the C-terminal region of many Gram-negative bacterial outer membrane proteins [], such as porin-like integral membrane proteins (such as ompA) [], small lipid-anchored proteins (such as pal) [], and MotB proton channels []. The N-terminal half is variable although some of the proteins in this group have the OmpA-like transmembrane domain IPR000498 from INTERPRO at the N terminus. OmpA from Escherichia coli is required for pathogenesis, and can interact with host receptor molecules []. MotB (and MotA) serves two functions in E. coli, the MotA(4)-MotB(2) complex attaches to the cell wall via MotB to form the stator of the flagellar motor, and the MotA-MotB complex couples the flow of ions across the cell membrane to movement of the rotor [].; GO: 0009279 cell outer membrane; PDB: 1OAP_A 2W8B_G 2HQS_C 4ERH_A 2ZF8_A 2ZOV_A 2ZVZ_B 2ZVY_A 3TD4_B 3TD5_D ....
Probab=65.72 E-value=13 Score=17.47 Aligned_cols=28 Identities=11% Similarity=0.083 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHhc--CCCcEEEEEEchH
Q 038643 3 GVVADISASVDWLKAN--GSKKVGMVGYCMG 31 (52)
Q Consensus 3 ~~~~d~~~~~~~l~~~--~~~~i~l~G~S~G 31 (52)
.....+..++++|+.. .. +|.|.||+-.
T Consensus 12 ~~~~~L~~l~~~l~~~~~~~-~i~I~G~td~ 41 (97)
T PF00691_consen 12 ESQEQLDELAKILKYPGNKD-QIEIEGHTDS 41 (97)
T ss_dssp HHHHHHHHHHHHHHSTTSTT-EEEEEEEEES
T ss_pred HHHHHHHHHHHHHhCcCCCC-eEEEEEEEcC
Confidence 3445666777777722 23 6999999875
No 366
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=65.37 E-value=23 Score=20.08 Aligned_cols=18 Identities=17% Similarity=0.344 Sum_probs=14.9
Q ss_pred EEEEEchHHHHHHHHHhh
Q 038643 24 GMVGYCMGSALTIACSAS 41 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~ 41 (52)
.+-|+++||.+.+.+++-
T Consensus 105 av~G~a~GgG~~lalacD 122 (262)
T PRK08140 105 AVNGVAAGAGANLALACD 122 (262)
T ss_pred EECCeeehhHHHHHHhCC
Confidence 366999999999988854
No 367
>cd07185 OmpA_C-like Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA. OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.
Probab=64.95 E-value=14 Score=17.52 Aligned_cols=28 Identities=18% Similarity=0.145 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEchH
Q 038643 4 VVADISASVDWLKANGSKKVGMVGYCMG 31 (52)
Q Consensus 4 ~~~d~~~~~~~l~~~~~~~i~l~G~S~G 31 (52)
..+.+..+.++++..+..++.+.||+-.
T Consensus 17 ~~~~l~~~~~~l~~~~~~~v~v~g~a~~ 44 (106)
T cd07185 17 AKPLLDKLAEVLKKNPDAKIRIEGHTDS 44 (106)
T ss_pred HHHHHHHHHHHHHHCCCceEEEEEEeCC
Confidence 3455667777887766568999999864
No 368
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=64.72 E-value=24 Score=20.04 Aligned_cols=34 Identities=9% Similarity=0.209 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEEchHHHHHHHHHhh
Q 038643 6 ADISASVDWLKANGSKKVGMVGYCMGSALTIACSAS 41 (52)
Q Consensus 6 ~d~~~~~~~l~~~~~~~i~l~G~S~GG~~a~~~a~~ 41 (52)
+++..+++.+.+ .++|.++|.-....++..+..+
T Consensus 116 ~~l~~~~~~i~~--a~~I~i~G~G~s~~~A~~~~~~ 149 (278)
T PRK11557 116 EKLHECVTMLRS--ARRIILTGIGASGLVAQNFAWK 149 (278)
T ss_pred HHHHHHHHHHhc--CCeEEEEecChhHHHHHHHHHH
Confidence 455566666654 4789999988888888877754
No 369
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=64.55 E-value=24 Score=19.99 Aligned_cols=19 Identities=21% Similarity=0.520 Sum_probs=15.6
Q ss_pred EEEEEchHHHHHHHHHhhc
Q 038643 24 GMVGYCMGSALTIACSASL 42 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~~ 42 (52)
.+-|+++||...+.+++.+
T Consensus 98 av~G~a~GgG~~lalacD~ 116 (255)
T PRK09674 98 AVNGYALGAGCELALLCDI 116 (255)
T ss_pred EECCEeehHHHHHHHhCCE
Confidence 3669999999999988643
No 370
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=63.92 E-value=26 Score=23.09 Aligned_cols=19 Identities=26% Similarity=0.635 Sum_probs=15.6
Q ss_pred EEEEEchHHHHHHHHHhhc
Q 038643 24 GMVGYCMGSALTIACSASL 42 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~~ 42 (52)
.+-|+|+||.+.+.+++.+
T Consensus 107 aV~G~a~GgG~~LalacD~ 125 (708)
T PRK11154 107 AIHGACLGGGLELALACHY 125 (708)
T ss_pred EECCeeechHHHHHHhCCE
Confidence 4669999999999988643
No 371
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=63.80 E-value=27 Score=23.05 Aligned_cols=19 Identities=16% Similarity=0.424 Sum_probs=15.7
Q ss_pred EEEEEchHHHHHHHHHhhc
Q 038643 24 GMVGYCMGSALTIACSASL 42 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~~ 42 (52)
.+-|+++||.+.+.+++.+
T Consensus 108 av~G~a~GgG~~LAlacD~ 126 (715)
T PRK11730 108 AINGYALGGGCECVLATDY 126 (715)
T ss_pred EECCEeehHHHHHHHhCCE
Confidence 3569999999999998653
No 372
>PF08484 Methyltransf_14: C-methyltransferase C-terminal domain; InterPro: IPR013691 This domain is found in bacterial C-methyltransferase proteins, often together with other methyltransferase domains such as IPR013216 from INTERPRO or IPR013217 from INTERPRO. ; PDB: 4E2X_A 3NDJ_A 3NDI_A 4E32_A 4E33_A 4E31_A 4E2Y_A 4E2W_A 4E2Z_A 4E30_A.
Probab=63.38 E-value=22 Score=19.10 Aligned_cols=40 Identities=15% Similarity=0.082 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEEchHHHHHHHHHhhcCCce
Q 038643 6 ADISASVDWLKANGSKKVGMVGYCMGSALTIACSASLMERK 46 (52)
Q Consensus 6 ~d~~~~~~~l~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~ 46 (52)
+++...++-++.. .++|.++|-|-.|.+-+.+....++.+
T Consensus 55 ~~l~~~L~~~~~~-gk~I~~yGA~~kg~tlln~~g~~~~~I 94 (160)
T PF08484_consen 55 AELREFLEKLKAE-GKRIAGYGAGAKGNTLLNYFGLDNDLI 94 (160)
T ss_dssp HHHHHHHHHHHHT-T--EEEE---SHHHHHHHHHT--TTTS
T ss_pred HHHHHHHHHHHHc-CCEEEEECcchHHHHHHHHhCCCccee
Confidence 3444444444443 478999999999988888776555533
No 373
>KOG4389 consensus Acetylcholinesterase/Butyrylcholinesterase [Signal transduction mechanisms]
Probab=63.31 E-value=11 Score=24.49 Aligned_cols=31 Identities=29% Similarity=0.632 Sum_probs=24.4
Q ss_pred HHHHHHHHHHhc----C--CCcEEEEEEchHHHHHHH
Q 038643 7 DISASVDWLKAN----G--SKKVGMVGYCMGSALTIA 37 (52)
Q Consensus 7 d~~~~~~~l~~~----~--~~~i~l~G~S~GG~~a~~ 37 (52)
|=+-+++|+++. + +++|.++|-|-|+.-...
T Consensus 198 DQqLAl~WV~~Ni~aFGGnp~~vTLFGESAGaASv~a 234 (601)
T KOG4389|consen 198 DQQLALQWVQENIAAFGGNPSRVTLFGESAGAASVVA 234 (601)
T ss_pred HHHHHHHHHHHhHHHhCCCcceEEEeccccchhhhhh
Confidence 556788999887 1 789999999999875443
No 374
>PRK10812 putative DNAse; Provisional
Probab=63.24 E-value=27 Score=20.13 Aligned_cols=48 Identities=8% Similarity=-0.097 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEEchHHHH-HHHHHhhcCCceeEeeeC
Q 038643 5 VADISASVDWLKANGSKKVGMVGYCMGSAL-TIACSASLMERKHTFRMN 52 (52)
Q Consensus 5 ~~d~~~~~~~l~~~~~~~i~l~G~S~GG~~-a~~~a~~~p~~~~~~~~~ 52 (52)
..|...+++-.++.+..++..+|.+....- +..++.++|....++-+|
T Consensus 19 ~~d~~~vl~~a~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~GiH 67 (265)
T PRK10812 19 HKDVDDVLAKAAARDVKFCLAVATTLPGYRHMRDLVGERDNVVFSCGVH 67 (265)
T ss_pred hcCHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHhhCCCeEEEEEeC
Confidence 347778887777777788999999987766 556666778776666554
No 375
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=62.65 E-value=22 Score=18.85 Aligned_cols=34 Identities=12% Similarity=0.124 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEEchHHHHHHHHHhh
Q 038643 6 ADISASVDWLKANGSKKVGMVGYCMGSALTIACSAS 41 (52)
Q Consensus 6 ~d~~~~~~~l~~~~~~~i~l~G~S~GG~~a~~~a~~ 41 (52)
+++..+++.+.+ .++|.++|....+.++..+..+
T Consensus 18 ~~~~~~~~~l~~--a~~I~i~G~G~S~~~A~~~~~~ 51 (179)
T TIGR03127 18 EELDKLADKIIK--AKRIFVAGAGRSGLVGKAFAMR 51 (179)
T ss_pred HHHHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHH
Confidence 456677777754 4789999987777777776654
No 376
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=62.58 E-value=15 Score=27.91 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=20.5
Q ss_pred HHHHhcCCCcEEEEEEchHHHHHHHHHh
Q 038643 13 DWLKANGSKKVGMVGYCMGSALTIACSA 40 (52)
Q Consensus 13 ~~l~~~~~~~i~l~G~S~GG~~a~~~a~ 40 (52)
+.+++.+..+-.++|||+|=..++..+.
T Consensus 666 ~lL~~~Gi~Pd~v~GHSlGE~aAa~aAG 693 (2582)
T TIGR02813 666 KLFTQAGFKADMTAGHSFGELSALCAAG 693 (2582)
T ss_pred HHHHHcCCccceeecCCHHHHHHHHHhC
Confidence 4455555556689999999988888763
No 377
>cd07214 Pat17_isozyme_like Patatin-like phospholipase of plants. Pat17 is an isozyme of patatin cloned from Solanum cardiophyllum. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue, and Nu = nucleophile). Patatin-like phospholipase are included in this group. Members of this family have also been found in vertebrates.
Probab=61.85 E-value=8.7 Score=22.98 Aligned_cols=18 Identities=22% Similarity=0.296 Sum_probs=15.9
Q ss_pred EEEEEchHHHHHHHHHhh
Q 038643 24 GMVGYCMGSALTIACSAS 41 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~ 41 (52)
.+.|.|-||.++..++..
T Consensus 46 liaGTStGgiiA~~la~~ 63 (349)
T cd07214 46 VIAGTSTGGLITAMLTAP 63 (349)
T ss_pred EEeeCCHHHHHHHHHhcC
Confidence 478999999999999974
No 378
>PF10561 UPF0565: Uncharacterised protein family UPF0565; InterPro: IPR018881 This family of proteins has no known function.
Probab=61.31 E-value=9.9 Score=22.72 Aligned_cols=22 Identities=9% Similarity=0.223 Sum_probs=18.0
Q ss_pred CCcEEEEEEchHHHHHHHHHhh
Q 038643 20 SKKVGMVGYCMGSALTIACSAS 41 (52)
Q Consensus 20 ~~~i~l~G~S~GG~~a~~~a~~ 41 (52)
..++.++|+|-|+.+--.+..+
T Consensus 192 ~~~~~LiGFSKGcvVLNqll~E 213 (303)
T PF10561_consen 192 KPPLTLIGFSKGCVVLNQLLYE 213 (303)
T ss_pred CCceEEEEecCcchHHHHHHHH
Confidence 4689999999999987776644
No 379
>PRK10510 putative outer membrane lipoprotein; Provisional
Probab=61.02 E-value=28 Score=19.61 Aligned_cols=28 Identities=21% Similarity=0.228 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHhcCCCcEEEEEEch
Q 038643 3 GVVADISASVDWLKANGSKKVGMVGYCM 30 (52)
Q Consensus 3 ~~~~d~~~~~~~l~~~~~~~i~l~G~S~ 30 (52)
.....+..+.++|++.+..+|.+.||.=
T Consensus 126 ~~~~~L~~ia~~L~~~p~~~I~I~GhTD 153 (219)
T PRK10510 126 AGANTLTGVAMVLKEYPKTAVNVVGYTD 153 (219)
T ss_pred HHHHHHHHHHHHHHhCCCceEEEEEecC
Confidence 3445666777777776656788888853
No 380
>cd07216 Pat17_PNPLA8_PNPLA9_like3 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=60.77 E-value=8.2 Score=22.47 Aligned_cols=17 Identities=18% Similarity=0.194 Sum_probs=14.8
Q ss_pred EEEEEchHHHHHHHHHh
Q 038643 24 GMVGYCMGSALTIACSA 40 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~ 40 (52)
.+.|.|.||.+|..++.
T Consensus 45 li~GTStGgiiA~~l~~ 61 (309)
T cd07216 45 LIGGTSTGGLIAIMLGR 61 (309)
T ss_pred eeeeccHHHHHHHHhcc
Confidence 57899999999998873
No 381
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=60.54 E-value=20 Score=17.84 Aligned_cols=24 Identities=17% Similarity=0.055 Sum_probs=16.5
Q ss_pred cEEEEE-EchHHHHHHHHHhhcCCc
Q 038643 22 KVGMVG-YCMGSALTIACSASLMER 45 (52)
Q Consensus 22 ~i~l~G-~S~GG~~a~~~a~~~p~~ 45 (52)
||+++| ..+.|.-.+.+...+|+.
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~ 25 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDF 25 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTE
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCc
Confidence 567777 677776666666667754
No 382
>PRK07396 dihydroxynaphthoic acid synthetase; Validated
Probab=60.07 E-value=27 Score=20.04 Aligned_cols=18 Identities=17% Similarity=0.403 Sum_probs=15.0
Q ss_pred EEEEEchHHHHHHHHHhh
Q 038643 24 GMVGYCMGSALTIACSAS 41 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~ 41 (52)
.+-|+++||.+.+.+++-
T Consensus 113 av~G~a~GgG~~lalacD 130 (273)
T PRK07396 113 MVAGYAIGGGHVLHLVCD 130 (273)
T ss_pred EECCEEehHHHHHHHhCC
Confidence 466999999999998854
No 383
>PRK13690 hypothetical protein; Provisional
Probab=59.98 E-value=25 Score=19.66 Aligned_cols=29 Identities=7% Similarity=0.069 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHHHHHhc---CCCcEEEEEEch
Q 038643 2 VGVVADISASVDWLKAN---GSKKVGMVGYCM 30 (52)
Q Consensus 2 ~~~~~d~~~~~~~l~~~---~~~~i~l~G~S~ 30 (52)
+...+++..+++.+.+. ...++.++|-|-
T Consensus 4 ~~i~~~~~~~~~El~~~a~l~~g~i~VvGcST 35 (184)
T PRK13690 4 EEIKKQTRQILEELLEQANLKPGQIFVLGCST 35 (184)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCCEEEEecch
Confidence 45667777777666555 267899999886
No 384
>PF04198 Sugar-bind: Putative sugar-binding domain; InterPro: IPR007324 This probable domain is found in bacterial transcriptional regulators such as DeoR and SorC. One of these proteins, Q8U7I7 from SWISSPROT, has an N-terminal helix-turn-helix IPR000792 from INTERPRO that binds to DNA. This domain is probably the ligand regulator binding region. SorC is regulated by sorbose and other members of this family are likely to be regulated by other sugar substrates.; GO: 0030246 carbohydrate binding; PDB: 3KV1_A 3EFB_C 2W48_A 3BXH_A 3BXE_A 2OKG_A 3BXF_A 3BXG_A 2R5F_A 2O0M_A ....
Probab=59.84 E-value=21 Score=20.41 Aligned_cols=31 Identities=19% Similarity=0.235 Sum_probs=18.0
Q ss_pred HHHHHHHhcCCCcEEEEEEchHHHHHHHHHhh
Q 038643 10 ASVDWLKANGSKKVGMVGYCMGSALTIACSAS 41 (52)
Q Consensus 10 ~~~~~l~~~~~~~i~l~G~S~GG~~a~~~a~~ 41 (52)
.+.+|+.+.- ++=..+|.|||-.+....-..
T Consensus 41 ~aA~~L~~~l-~~~~~iGv~wG~Tl~~~~~~l 71 (255)
T PF04198_consen 41 AAAEYLSELL-KDGDVIGVGWGRTLYAVANHL 71 (255)
T ss_dssp HHHHHHHHH---TTEEEEE-TSHHHHHHHHTS
T ss_pred HHHHHHHHhC-CCCCEEEEcchHHHHHHHHhc
Confidence 3446776652 222378999999887665543
No 385
>cd07199 Pat17_PNPLA8_PNPLA9_like Patatin-like phospholipase; includes PNPLA8, PNPLA9, and Pat17. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=58.66 E-value=11 Score=21.27 Aligned_cols=18 Identities=11% Similarity=0.263 Sum_probs=15.8
Q ss_pred EEEEEchHHHHHHHHHhh
Q 038643 24 GMVGYCMGSALTIACSAS 41 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~ 41 (52)
.+.|.|-||.++..++..
T Consensus 37 ~i~GtS~G~iia~~l~~~ 54 (258)
T cd07199 37 LIAGTSTGGIIALGLALG 54 (258)
T ss_pred eeeeccHHHHHHHHHhcC
Confidence 478999999999999865
No 386
>KOG1283 consensus Serine carboxypeptidases [Posttranslational modification, protein turnover, chaperones]
Probab=58.51 E-value=18 Score=22.35 Aligned_cols=40 Identities=5% Similarity=0.034 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHHHHh-cC---CCcEEEEEEchHHHHHHHHHhh
Q 038643 2 VGVVADISASVDWLKA-NG---SKKVGMVGYCMGSALTIACSAS 41 (52)
Q Consensus 2 ~~~~~d~~~~~~~l~~-~~---~~~i~l~G~S~GG~~a~~~a~~ 41 (52)
++...|+...++-+-. ++ ..++.++--|.||.++..++..
T Consensus 99 ~qia~Dl~~llk~f~~~h~e~~t~P~~If~ESYGGKma~k~al~ 142 (414)
T KOG1283|consen 99 KQIALDLVELLKGFFTNHPEFKTVPLYIFCESYGGKMAAKFALE 142 (414)
T ss_pred HHHHHHHHHHHHHHHhcCccccccceEEEEhhcccchhhhhhhh
Confidence 4566677666643333 33 5789999999999999888754
No 387
>PF01872 RibD_C: RibD C-terminal domain; InterPro: IPR002734 This domain is found in the C terminus of the bifunctional deaminase-reductase of Escherichia coli, Bacillus subtilis and other bacteria in combination with IPR002125 from INTERPRO that catalyses the second and third steps in the biosynthesis of riboflavin, i.e., the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (deaminase) and the subsequent reduction of the ribosyl side chain (reductase) []. The domain is also present in some HTP reductases from archaea and fungi.; GO: 0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity, 0009231 riboflavin biosynthetic process, 0055114 oxidation-reduction process; PDB: 3KY8_B 3KGY_B 2GD9_B 3JTW_B 2XW7_B 2D5N_B 2B3Z_A 3EX8_B 2AZN_A 2P4G_A ....
Probab=58.16 E-value=28 Score=18.72 Aligned_cols=31 Identities=26% Similarity=0.406 Sum_probs=23.8
Q ss_pred HHHHHHHHHHhcCCCcEEEEEEchHHHHHHHHHh
Q 038643 7 DISASVDWLKANGSKKVGMVGYCMGSALTIACSA 40 (52)
Q Consensus 7 d~~~~~~~l~~~~~~~i~l~G~S~GG~~a~~~a~ 40 (52)
|+..+++.|++++..+|.+.| ||.+...+..
T Consensus 122 dl~~~l~~L~~~g~~~i~v~G---G~~l~~~~l~ 152 (200)
T PF01872_consen 122 DLEEALRRLKERGGKDILVEG---GGSLNGSFLR 152 (200)
T ss_dssp HHHHHHHHHHHTTTSEEEEEE---HHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCEEEEec---hHHHHHHHHh
Confidence 688889999988778888877 6666666553
No 388
>TIGR03350 type_VI_ompA type VI secretion system OmpA/MotB family protein. The flagellar motor protein MotB and the Gram-negative bacterial outer membrane protein OmpA share a region of sequence homology. This model describes a domain found fused to type VI secretion system homologs of the type IV system protein DotU (see model TIGR03349), with OmpA/MotB homology.
Probab=57.84 E-value=25 Score=17.99 Aligned_cols=26 Identities=15% Similarity=0.055 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEch
Q 038643 4 VVADISASVDWLKANGSKKVGMVGYCM 30 (52)
Q Consensus 4 ~~~d~~~~~~~l~~~~~~~i~l~G~S~ 30 (52)
....+..+.++|+..+ .+|.+.||+=
T Consensus 45 ~~~~L~~ia~~l~~~~-~~i~I~GhTD 70 (137)
T TIGR03350 45 FEPLLDRIAKALAAVP-GRITVVGHTD 70 (137)
T ss_pred HHHHHHHHHHHHHhCC-CeEEEEEecC
Confidence 4456677777777765 7899999984
No 389
>PRK10425 DNase TatD; Provisional
Probab=56.83 E-value=36 Score=19.55 Aligned_cols=49 Identities=12% Similarity=0.011 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEchHHHH-HHHHHhhcCCceeEeeeC
Q 038643 4 VVADISASVDWLKANGSKKVGMVGYCMGSAL-TIACSASLMERKHTFRMN 52 (52)
Q Consensus 4 ~~~d~~~~~~~l~~~~~~~i~l~G~S~GG~~-a~~~a~~~p~~~~~~~~~ 52 (52)
...|....++..++.+..++..+|.+..... +..++..+|....++-+|
T Consensus 13 ~~~d~~~vl~~a~~~gv~~~i~~~~~~~~~~~~~~l~~~~~~v~~~~GiH 62 (258)
T PRK10425 13 FAKDRDDVVARAFAAGVNGMLITGTNLRESQQAQKLARQYPSCWSTAGVH 62 (258)
T ss_pred hhccHHHHHHHHHHCCCCEEEEeCCCHHHHHHHHHHHHhCCCEEEEEEeC
Confidence 3457777787776666678999999988766 555666677766666554
No 390
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=56.72 E-value=40 Score=22.22 Aligned_cols=19 Identities=26% Similarity=0.599 Sum_probs=15.7
Q ss_pred EEEEEchHHHHHHHHHhhc
Q 038643 24 GMVGYCMGSALTIACSASL 42 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~~ 42 (52)
.+-|+|+||.+.+.+++.+
T Consensus 102 aVnG~a~GgG~~LaLacD~ 120 (699)
T TIGR02440 102 AIHGACLGGGLELALACHS 120 (699)
T ss_pred EECCEeecHHHHHHHhCCE
Confidence 3669999999999998654
No 391
>PRK12467 peptide synthase; Provisional
Probab=56.70 E-value=29 Score=27.21 Aligned_cols=31 Identities=16% Similarity=0.378 Sum_probs=22.1
Q ss_pred HHHHHHhc-CCCcEEEEEEchHHHHHHHHHhh
Q 038643 11 SVDWLKAN-GSKKVGMVGYCMGSALTIACSAS 41 (52)
Q Consensus 11 ~~~~l~~~-~~~~i~l~G~S~GG~~a~~~a~~ 41 (52)
..++++.. +..+..+.|||+||.++..++..
T Consensus 3746 y~~~~~~~~~~~p~~l~g~s~g~~~a~~~~~~ 3777 (3956)
T PRK12467 3746 YADYILWQQAKGPYGLLGWSLGGTLARLVAEL 3777 (3956)
T ss_pred HHHHHHHhccCCCeeeeeeecchHHHHHHHHH
Confidence 34454443 34568899999999999888753
No 392
>PLN02921 naphthoate synthase
Probab=55.55 E-value=31 Score=20.58 Aligned_cols=18 Identities=17% Similarity=0.386 Sum_probs=14.8
Q ss_pred EEEEEchHHHHHHHHHhh
Q 038643 24 GMVGYCMGSALTIACSAS 41 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~ 41 (52)
.+-|+++||.+.+.+++-
T Consensus 167 aVnG~a~GGG~~LalacD 184 (327)
T PLN02921 167 MVAGYAVGGGHILHMVCD 184 (327)
T ss_pred EECCEEecHHHHHHHhCC
Confidence 356999999999988854
No 393
>PF05952 ComX: Bacillus competence pheromone ComX; InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=55.07 E-value=18 Score=16.43 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=16.7
Q ss_pred HHHHHHHHhcC-------CCcEEEEEEchH
Q 038643 9 SASVDWLKANG-------SKKVGMVGYCMG 31 (52)
Q Consensus 9 ~~~~~~l~~~~-------~~~i~l~G~S~G 31 (52)
+..++||.+.| ..+..++|.+-=
T Consensus 3 Q~iV~YLv~nPevl~kl~~g~asLIGv~~~ 32 (57)
T PF05952_consen 3 QEIVNYLVQNPEVLEKLKEGEASLIGVDKD 32 (57)
T ss_pred HHHHHHHHHChHHHHHHHcCCeeEecCCHH
Confidence 56778877765 467889988753
No 394
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=55.04 E-value=18 Score=20.76 Aligned_cols=25 Identities=8% Similarity=0.182 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEEch
Q 038643 6 ADISASVDWLKANGSKKVGMVGYCM 30 (52)
Q Consensus 6 ~d~~~~~~~l~~~~~~~i~l~G~S~ 30 (52)
.|+..+++.++.....+++++||-=
T Consensus 182 ~~l~~ai~~~~~~~~~~l~~fGH~H 206 (238)
T cd07397 182 PDLALAISQIQQGRQVPLVVFGHMH 206 (238)
T ss_pred HHHHHHHHHHhccCCCCEEEeCCcc
Confidence 5788888887744456889999854
No 395
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=54.96 E-value=8.8 Score=21.81 Aligned_cols=18 Identities=28% Similarity=0.621 Sum_probs=15.2
Q ss_pred EEEEEchHHHHHHHHHhh
Q 038643 24 GMVGYCMGSALTIACSAS 41 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~ 41 (52)
.+-|+|+||.+.+.+++-
T Consensus 100 av~G~a~GgG~~lalacD 117 (261)
T PRK03580 100 AVNGYAFGGGFELALAAD 117 (261)
T ss_pred EECCeeehHHHHHHHHCC
Confidence 466999999999998864
No 396
>TIGR03789 pdsO proteobacterial sortase system OmpA family protein. A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the OmpA protein family (pfam00691). Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein.
Probab=54.82 E-value=40 Score=19.47 Aligned_cols=28 Identities=14% Similarity=0.265 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHhcCCCcEEEEEEch
Q 038643 3 GVVADISASVDWLKANGSKKVGMVGYCM 30 (52)
Q Consensus 3 ~~~~d~~~~~~~l~~~~~~~i~l~G~S~ 30 (52)
.....+..+.++++..+..+|.+.||.=
T Consensus 149 ~~~~~L~~iA~~Lk~~p~~~V~I~GHTD 176 (239)
T TIGR03789 149 HFQPQLDEVATLMKQSPELKLDLSGYAD 176 (239)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEEeCC
Confidence 3456677777888776656788999864
No 397
>cd07215 Pat17_PNPLA8_PNPLA9_like2 Patatin-like phospholipase of bacteria. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=54.81 E-value=12 Score=22.06 Aligned_cols=17 Identities=24% Similarity=0.194 Sum_probs=14.4
Q ss_pred EEEEEchHHHHHHHHHh
Q 038643 24 GMVGYCMGSALTIACSA 40 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~ 40 (52)
.+.|.|-||.+++.+++
T Consensus 43 li~GTStGgiia~~l~~ 59 (329)
T cd07215 43 LVAGTSTGGILTCLYLC 59 (329)
T ss_pred eeeccCHHHHHHHHHhC
Confidence 47899999999988764
No 398
>PRK06494 enoyl-CoA hydratase; Provisional
Probab=54.27 E-value=8.7 Score=21.81 Aligned_cols=18 Identities=22% Similarity=0.471 Sum_probs=15.2
Q ss_pred EEEEEchHHHHHHHHHhh
Q 038643 24 GMVGYCMGSALTIACSAS 41 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~ 41 (52)
.+-|+++||.+.+.+++.
T Consensus 100 av~G~a~GgG~~lalacD 117 (259)
T PRK06494 100 AVNGVAMGGGFELALACD 117 (259)
T ss_pred EECCEEecHHHHHHHhCC
Confidence 466999999999998864
No 399
>KOG4754 consensus Predicted phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=53.54 E-value=38 Score=19.76 Aligned_cols=32 Identities=19% Similarity=0.275 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHHHHhcCCCcEEEEEEchHHHHH
Q 038643 2 VGVVADISASVDWLKANGSKKVGMVGYCMGSALT 35 (52)
Q Consensus 2 ~~~~~d~~~~~~~l~~~~~~~i~l~G~S~GG~~a 35 (52)
|....+-..+++|+..++.+.|.++=|| |.+.
T Consensus 162 e~~a~r~re~~~~l~~r~ek~iavvths--~fl~ 193 (248)
T KOG4754|consen 162 EESAARSREFLEWLAKRPEKEIAVVTHS--GFLR 193 (248)
T ss_pred HHHHHhHHHHHHHHHhCccceEEEEEeh--HHHH
Confidence 3456677788999999887889999776 4554
No 400
>PRK12478 enoyl-CoA hydratase; Provisional
Probab=53.52 E-value=11 Score=22.04 Aligned_cols=18 Identities=33% Similarity=0.610 Sum_probs=14.9
Q ss_pred EEEEEchHHHHHHHHHhh
Q 038643 24 GMVGYCMGSALTIACSAS 41 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~ 41 (52)
.+-|+|+||.+.+.+++-
T Consensus 118 aV~G~a~GgG~~LalacD 135 (298)
T PRK12478 118 QVHGWCVGGASDYALCAD 135 (298)
T ss_pred EEccEEehhHHHHHHHCC
Confidence 366999999999988854
No 401
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=53.39 E-value=9.4 Score=21.58 Aligned_cols=18 Identities=22% Similarity=0.628 Sum_probs=15.1
Q ss_pred EEEEEchHHHHHHHHHhh
Q 038643 24 GMVGYCMGSALTIACSAS 41 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~ 41 (52)
.+-|+|+||.+.+.+++-
T Consensus 98 av~G~a~GgG~~lal~cD 115 (255)
T PRK06563 98 AVQGYCLTLGIELMLAAD 115 (255)
T ss_pred EEcCeeecHHHHHHHhCC
Confidence 366999999999998864
No 402
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=53.26 E-value=47 Score=19.77 Aligned_cols=41 Identities=20% Similarity=0.256 Sum_probs=26.4
Q ss_pred HHHHHHHHhcC----CCcEEEEEEch--HHHHHHHHHhhcCCceeEe
Q 038643 9 SASVDWLKANG----SKKVGMVGYCM--GSALTIACSASLMERKHTF 49 (52)
Q Consensus 9 ~~~~~~l~~~~----~~~i~l~G~S~--GG~~a~~~a~~~p~~~~~~ 49 (52)
.++++.|+... .+++.++|.|. |=-+++.+..++|+..+.+
T Consensus 138 ~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtV 184 (287)
T PRK14181 138 AGIIELLKYYEIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATV 184 (287)
T ss_pred HHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEE
Confidence 34555555442 58899999997 7777777776644333443
No 403
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=52.96 E-value=46 Score=19.61 Aligned_cols=23 Identities=9% Similarity=0.099 Sum_probs=17.9
Q ss_pred CCcEEEEEEchHHHHHHHHHhhc
Q 038643 20 SKKVGMVGYCMGSALTIACSASL 42 (52)
Q Consensus 20 ~~~i~l~G~S~GG~~a~~~a~~~ 42 (52)
..+++++|.--.|.++...+...
T Consensus 62 ggrI~~~GaGtSg~la~~da~e~ 84 (299)
T PRK05441 62 GGRLIYIGAGTSGRLGVLDASEC 84 (299)
T ss_pred CCEEEEEcCcHHHHHHHHHHHhC
Confidence 57899999999998886555543
No 404
>PLN02714 thiamin pyrophosphokinase
Probab=52.93 E-value=19 Score=20.40 Aligned_cols=37 Identities=8% Similarity=0.252 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHHHHHhcC------CCcEEEEEEchHHHHHHHHH
Q 038643 2 VGVVADISASVDWLKANG------SKKVGMVGYCMGSALTIACS 39 (52)
Q Consensus 2 ~~~~~d~~~~~~~l~~~~------~~~i~l~G~S~GG~~a~~~a 39 (52)
|+...|.+.+++++.++. ...|.++| .+||.+=..++
T Consensus 86 eKD~TD~e~Al~~~~~~~~~~~~~~~~I~v~G-a~GGRlDH~la 128 (229)
T PLN02714 86 DQDTTDLHKCIAYIRDSTPDLDKSNLCILVLG-ALGGRFDHEAG 128 (229)
T ss_pred CcccCHHHHHHHHHHHhccccccCCceEEEEc-ccCCchHHHHH
Confidence 445679999999987553 25699998 56887644333
No 405
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=52.68 E-value=41 Score=18.92 Aligned_cols=47 Identities=15% Similarity=0.129 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhcC-CCcEEEEEEchHHHHHHHHHhhcC-CceeEeeeC
Q 038643 6 ADISASVDWLKANG-SKKVGMVGYCMGSALTIACSASLM-ERKHTFRMN 52 (52)
Q Consensus 6 ~d~~~~~~~l~~~~-~~~i~l~G~S~GG~~a~~~a~~~p-~~~~~~~~~ 52 (52)
+.+.++++.+...+ ..-+.+.|-=|||.++-..-.... .-+..+++|
T Consensus 127 E~laEAVkAV~rLpRv~iLVLAGslMGGkIteaVk~lr~~hgI~VISL~ 175 (218)
T COG1707 127 EELAEAVKAVARLPRVGILVLAGSLMGGKITEAVKELREEHGIPVISLN 175 (218)
T ss_pred HHHHHHHHHHhccccceeEEEecccccchHHHHHHHHHHhcCCeEEEec
Confidence 34566666666555 344567888899999876653322 245555554
No 406
>PF00034 Cytochrom_C: Cytochrome c; InterPro: IPR003088 Cytochromes c (cytC) can be defined as electron-transfer proteins having one or several haem c groups, bound to the protein by one or, more generally, two thioether bonds involving sulphydryl groups of cysteine residues. The fifth haem iron ligand is always provided by a histidine residue. CytC possess a wide range of properties and function in a large number of different redox processes. Ambler [] recognised four classes of cytC. Class I includes the low-spin soluble cytC of mitochondria and bacteria, with the haem-attachment site towards the N terminus, and the sixth ligand provided by a methionine residue about 40 residues further on towards the C terminus. On the basis of sequence similarity, class I cytC were further subdivided into five classes, IA to IE. Class IB includes the eukaryotic mitochondrial cytC and prokaryotic 'short' cyt c2 exemplified by Rhodopila globiformis cyt c2; class IA includes 'long' cyt c2, such as Rhodospirillum rubrum cyt c2 and Aquaspirillum itersonii cyt c-550, which have several extra loops by comparison with class IB cytC.; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding; PDB: 1YNR_B 2AI5_A 1AYG_A 3O5C_C 1YEA_A 3CXH_W 1YTC_A 1YEB_A 2YBB_Y 2B4Z_A ....
Probab=52.43 E-value=19 Score=16.04 Aligned_cols=14 Identities=14% Similarity=0.268 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHhc
Q 038643 5 VADISASVDWLKAN 18 (52)
Q Consensus 5 ~~d~~~~~~~l~~~ 18 (52)
-+|+.+++.||+++
T Consensus 77 ~~e~~~l~ayl~sl 90 (91)
T PF00034_consen 77 DEEIADLAAYLRSL 90 (91)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh
Confidence 36888888888764
No 407
>PRK14046 malate--CoA ligase subunit beta; Provisional
Probab=52.25 E-value=14 Score=22.61 Aligned_cols=33 Identities=15% Similarity=0.077 Sum_probs=27.0
Q ss_pred CCcEEEEEEchHHHHHHHHHhhcCCceeEeeeC
Q 038643 20 SKKVGMVGYCMGSALTIACSASLMERKHTFRMN 52 (52)
Q Consensus 20 ~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~~~ 52 (52)
..++.++|-+.||.-.=..+.++|+.+..+.++
T Consensus 118 ~g~~v~~~s~~GGv~iEe~~~~~p~~i~~~~i~ 150 (392)
T PRK14046 118 SERVRVIASARGGMEIEEIAAKEPEAIIQVVVE 150 (392)
T ss_pred CCcEEEEEeCCCCCchHHHhhhChhheEEEEcC
Confidence 357788898899999999999999887776653
No 408
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=51.84 E-value=36 Score=18.06 Aligned_cols=34 Identities=9% Similarity=0.117 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEEchHHHHHHHHHhh
Q 038643 6 ADISASVDWLKANGSKKVGMVGYCMGSALTIACSAS 41 (52)
Q Consensus 6 ~d~~~~~~~l~~~~~~~i~l~G~S~GG~~a~~~a~~ 41 (52)
++++.+++.+.+ .++|.++|.-..+.++..+..+
T Consensus 21 ~~l~~~~~~i~~--a~~I~i~G~G~S~~~A~~~~~~ 54 (179)
T cd05005 21 EELDKLISAILN--AKRIFVYGAGRSGLVAKAFAMR 54 (179)
T ss_pred HHHHHHHHHHHh--CCeEEEEecChhHHHHHHHHHH
Confidence 455666666654 4789999977666777766644
No 409
>KOG2308 consensus Phosphatidic acid-preferring phospholipase A1, contains DDHD domain [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=51.72 E-value=9.4 Score=25.52 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=18.7
Q ss_pred CCcEEEEEEchHHHHHHHHHhhc
Q 038643 20 SKKVGMVGYCMGSALTIACSASL 42 (52)
Q Consensus 20 ~~~i~l~G~S~GG~~a~~~a~~~ 42 (52)
..+|.+.|||+|..++....+..
T Consensus 416 ~G~Vsi~gHSLGSvit~Dil~~q 438 (741)
T KOG2308|consen 416 NGKVSIAGHSLGSVITYDILSHQ 438 (741)
T ss_pred cCceeeccCCCCceEEEeecccc
Confidence 47899999999999887766554
No 410
>PRK04148 hypothetical protein; Provisional
Probab=51.60 E-value=36 Score=17.94 Aligned_cols=22 Identities=18% Similarity=0.092 Sum_probs=17.6
Q ss_pred CCcEEEEEEchHHHHHHHHHhh
Q 038643 20 SKKVGMVGYCMGSALTIACSAS 41 (52)
Q Consensus 20 ~~~i~l~G~S~GG~~a~~~a~~ 41 (52)
..++..+|.-.|..++..++..
T Consensus 17 ~~kileIG~GfG~~vA~~L~~~ 38 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKES 38 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHHC
Confidence 3679999999888888888754
No 411
>PRK07877 hypothetical protein; Provisional
Probab=51.48 E-value=26 Score=23.40 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=19.3
Q ss_pred CCcEEEEEEchHHHHHHHHHhh
Q 038643 20 SKKVGMVGYCMGSALTIACSAS 41 (52)
Q Consensus 20 ~~~i~l~G~S~GG~~a~~~a~~ 41 (52)
..+|.++|-+.|+.++..++..
T Consensus 107 ~~~V~IvG~GlGs~~a~~Lara 128 (722)
T PRK07877 107 RLRIGVVGLSVGHAIAHTLAAE 128 (722)
T ss_pred cCCEEEEEecHHHHHHHHHHHc
Confidence 5789999999999999998854
No 412
>PHA02595 tk.4 hypothetical protein; Provisional
Probab=50.99 E-value=11 Score=19.98 Aligned_cols=17 Identities=18% Similarity=0.217 Sum_probs=14.9
Q ss_pred chHHHHHHHHHhhcCCc
Q 038643 29 CMGSALTIACSASLMER 45 (52)
Q Consensus 29 S~GG~~a~~~a~~~p~~ 45 (52)
.||+.+|..+-.++|+.
T Consensus 30 ~mG~GIA~~~k~~~P~~ 46 (154)
T PHA02595 30 TMGSGIAGQLAKAFPQI 46 (154)
T ss_pred cCChHHHHHHHHHcChH
Confidence 79999999999888853
No 413
>PRK15416 lipopolysaccharide core heptose(II)-phosphate phosphatase; Provisional
Probab=50.61 E-value=27 Score=19.64 Aligned_cols=20 Identities=10% Similarity=0.016 Sum_probs=13.7
Q ss_pred HHHHHhcCCCcEEEEEEchH
Q 038643 12 VDWLKANGSKKVGMVGYCMG 31 (52)
Q Consensus 12 ~~~l~~~~~~~i~l~G~S~G 31 (52)
.+.+++.+.+.+.++||+=|
T Consensus 143 ~~~i~~~~~~tVLIVGHnp~ 162 (201)
T PRK15416 143 KDLQRKSPDKNIVIFTHNHC 162 (201)
T ss_pred HHHHHhCCCCEEEEEeCchh
Confidence 44455554578999999864
No 414
>PRK15482 transcriptional regulator MurR; Provisional
Probab=50.56 E-value=47 Score=19.01 Aligned_cols=34 Identities=9% Similarity=0.084 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEEchHHHHHHHHHhh
Q 038643 6 ADISASVDWLKANGSKKVGMVGYCMGSALTIACSAS 41 (52)
Q Consensus 6 ~d~~~~~~~l~~~~~~~i~l~G~S~GG~~a~~~a~~ 41 (52)
++++.+++.+.+ .++|.++|.-..+.++..+..+
T Consensus 123 ~~l~~~~~~i~~--A~~I~i~G~G~S~~~A~~l~~~ 156 (285)
T PRK15482 123 ARLQKIIEVISK--APFIQITGLGGSALVGRDLSFK 156 (285)
T ss_pred HHHHHHHHHHHh--CCeeEEEEeChhHHHHHHHHHH
Confidence 355666666654 4789999988777777777654
No 415
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=50.43 E-value=53 Score=19.54 Aligned_cols=42 Identities=10% Similarity=0.019 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhcCCCcEEEEEEchHHHHHHHHHhhcCCceeEe
Q 038643 7 DISASVDWLKANGSKKVGMVGYCMGSALTIACSASLMERKHTF 49 (52)
Q Consensus 7 d~~~~~~~l~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~ 49 (52)
-++...+-+.-.+..++-=+|-.||+. +..+|.++.-.+-++
T Consensus 60 k~~~~~~kl~L~~G~~lLDiGCGWG~l-~~~aA~~y~v~V~Gv 101 (283)
T COG2230 60 KLDLILEKLGLKPGMTLLDIGCGWGGL-AIYAAEEYGVTVVGV 101 (283)
T ss_pred HHHHHHHhcCCCCCCEEEEeCCChhHH-HHHHHHHcCCEEEEe
Confidence 334444444333456777789888876 455565653344444
No 416
>TIGR02690 resist_ArsH arsenical resistance protein ArsH. Members of this protein family occur in arsenate resistance operons that include at least two different types of arsenate reductase. ArsH is not required for arsenate resistance in some systems. This family belongs to the larger family of NADPH-dependent FMN reductases (Pfam model pfam03358). The function of ArsH is not known.
Probab=50.32 E-value=38 Score=19.21 Aligned_cols=26 Identities=15% Similarity=0.473 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhc-------CCCcEEEEEEchHHH
Q 038643 7 DISASVDWLKAN-------GSKKVGMVGYCMGSA 33 (52)
Q Consensus 7 d~~~~~~~l~~~-------~~~~i~l~G~S~GG~ 33 (52)
-+..++||+... ..+++.++|.| ||.
T Consensus 108 ~LKNaiDwls~~~~~~~~~~~KpvaivgaS-gg~ 140 (219)
T TIGR02690 108 SQKDQIDWIPLSVGPVRPTQGKTLAVMQVS-GGS 140 (219)
T ss_pred HHHHHHHhcccCcccccccCCCcEEEEEeC-CcH
Confidence 356788888653 14678999998 543
No 417
>PF12982 DUF3866: Protein of unknown function (DUF3866); InterPro: IPR024479 This family of proteins is currently functionally uncharacterised.
Probab=50.23 E-value=18 Score=21.90 Aligned_cols=26 Identities=27% Similarity=0.311 Sum_probs=19.7
Q ss_pred HHHHHHHHHhcC-CCcEEEEEEchHHH
Q 038643 8 ISASVDWLKANG-SKKVGMVGYCMGSA 33 (52)
Q Consensus 8 ~~~~~~~l~~~~-~~~i~l~G~S~GG~ 33 (52)
+...++.|++.+ ....+-+|+++||=
T Consensus 131 fS~~v~~Lk~~g~l~~tIT~GqAFGGD 157 (320)
T PF12982_consen 131 FSRTVAELKEKGLLDATITCGQAFGGD 157 (320)
T ss_pred HHHHHHHHHhCCceeeeEEeccccCCc
Confidence 456677888775 45677899999994
No 418
>PF10664 NdhM: Cyanobacterial and plastid NDH-1 subunit M; InterPro: IPR018922 The NADH dehydrogenase I complex shuttles electrons from an unknown electron donor, via FMN and iron-sulphur (Fe-S) centres, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in plants is believed to be plastoquinone. The NADH dehydrogenase I complex couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. This entry represents subunit M of the NADH dehydrogenase I complex in cyanobacteria and plant chloroplasts []. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process
Probab=50.01 E-value=19 Score=18.34 Aligned_cols=28 Identities=21% Similarity=0.387 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHhcC----CCcEEEEEEchH
Q 038643 4 VVADISASVDWLKANG----SKKVGMVGYCMG 31 (52)
Q Consensus 4 ~~~d~~~~~~~l~~~~----~~~i~l~G~S~G 31 (52)
.-.|++.+++.|.+.+ ...-=+.-+|||
T Consensus 71 IGSdLE~~iR~LLq~GeisYNl~~RVlNySMG 102 (108)
T PF10664_consen 71 IGSDLEHFIRSLLQAGEISYNLDSRVLNYSMG 102 (108)
T ss_pred hccHHHHHHHHHHHCCceeeCCCcceeccccC
Confidence 3467788887777764 122235777887
No 419
>cd03331 Macro_Poa1p_like_SNF2 Macro domain, Poa1p_like family, SNF2 subfamily. The macro domain is a high-affinity ADP-ribose binding module found in a variety of proteins as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Some macro domains recognize poly ADP-ribose as a ligand. Previously identified as displaying an Appr-1"-p (ADP-ribose-1"-monophosphate) processing activity, the macro domain may play roles in distinct ADP-ribose pathways, such as the ADP-ribosylation of proteins, an important post-translational modification which occurs in DNA repair, transcription, chromatin biology, and long-term memory formation, among other processes. Members of this subfamily contain a C-terminal macro domain that show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. In addition, they also contain an SNF2 domain, defined by the presence of seven
Probab=50.00 E-value=10 Score=20.29 Aligned_cols=17 Identities=18% Similarity=0.053 Sum_probs=14.2
Q ss_pred chH-HHHHHHHHhhcCCc
Q 038643 29 CMG-SALTIACSASLMER 45 (52)
Q Consensus 29 S~G-G~~a~~~a~~~p~~ 45 (52)
+|| |.++..+..++|..
T Consensus 31 ~WG~gGia~al~~k~p~~ 48 (152)
T cd03331 31 HWGRGGLFTALEKRSDQP 48 (152)
T ss_pred CCCcchHHHHHHHhCCcH
Confidence 599 78999999888864
No 420
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=49.29 E-value=12 Score=21.11 Aligned_cols=19 Identities=21% Similarity=0.545 Sum_probs=15.6
Q ss_pred EEEEEchHHHHHHHHHhhc
Q 038643 24 GMVGYCMGSALTIACSASL 42 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~~ 42 (52)
.+-|+++||.+.+.+++.+
T Consensus 97 av~G~a~GgG~~lalacD~ 115 (254)
T PRK08252 97 AVEGYALAGGFELALACDL 115 (254)
T ss_pred EECCEEehHHHHHHHhCCE
Confidence 3669999999999998643
No 421
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=49.24 E-value=28 Score=18.51 Aligned_cols=31 Identities=10% Similarity=0.116 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEchHHHH
Q 038643 4 VVADISASVDWLKANGSKKVGMVGYCMGSAL 34 (52)
Q Consensus 4 ~~~d~~~~~~~l~~~~~~~i~l~G~S~GG~~ 34 (52)
..+|.+...+++.++.+.-|.+-|.|+.+.-
T Consensus 48 ~~~~~~~l~~~i~~~kP~vI~v~g~~~~s~~ 78 (150)
T PF14639_consen 48 KEEDMERLKKFIEKHKPDVIAVGGNSRESRK 78 (150)
T ss_dssp SHHHHHHHHHHHHHH--SEEEE--SSTHHHH
T ss_pred HHHHHHHHHHHHHHcCCeEEEEcCCChhHHH
Confidence 3467777888888876565666688887764
No 422
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=49.14 E-value=56 Score=19.44 Aligned_cols=32 Identities=13% Similarity=0.010 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEchHHHHH
Q 038643 4 VVADISASVDWLKANGSKKVGMVGYCMGSALT 35 (52)
Q Consensus 4 ~~~d~~~~~~~l~~~~~~~i~l~G~S~GG~~a 35 (52)
..+.+..+++.+.++..++|.++|..-....+
T Consensus 28 ~~~~l~~~~~~l~~~~~~~I~~~g~GsS~~aa 59 (340)
T PRK11382 28 DVPLVHAIVEEMVKRDIDRIYFVACGSPLNAA 59 (340)
T ss_pred hhHHHHHHHHHHHhCCCCEEEEEEechHHHHH
Confidence 34667788888887767889888744443333
No 423
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=48.94 E-value=44 Score=18.25 Aligned_cols=37 Identities=11% Similarity=0.035 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhc--CCCcEEEEEEchHHHHHHHHHh
Q 038643 4 VVADISASVDWLKAN--GSKKVGMVGYCMGSALTIACSA 40 (52)
Q Consensus 4 ~~~d~~~~~~~l~~~--~~~~i~l~G~S~GG~~a~~~a~ 40 (52)
..+.+..+++++.+. ..++|.++|.--.+.++..++.
T Consensus 26 ~~~~i~~a~~~i~~al~~~~rI~i~G~G~S~~~A~~~a~ 64 (192)
T PRK00414 26 NIHAIQRAAVLIADSFKAGGKVLSCGNGGSHCDAMHFAE 64 (192)
T ss_pred hHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHH
Confidence 345677777777654 3589999998888888888873
No 424
>PRK08788 enoyl-CoA hydratase; Validated
Probab=48.49 E-value=13 Score=21.80 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=15.0
Q ss_pred EEEEEchHHHHHHHHHhh
Q 038643 24 GMVGYCMGSALTIACSAS 41 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~ 41 (52)
.+-|+|+||.+.+.+++-
T Consensus 127 aV~G~a~GgG~~LalacD 144 (287)
T PRK08788 127 LVQGDALGGGFEAALSHH 144 (287)
T ss_pred EECCeeehHHHHHHHhCC
Confidence 356999999999998854
No 425
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=47.87 E-value=54 Score=18.95 Aligned_cols=35 Identities=11% Similarity=0.228 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEEchHHHHHHHHHhhc
Q 038643 6 ADISASVDWLKANGSKKVGMVGYCMGSALTIACSASL 42 (52)
Q Consensus 6 ~d~~~~~~~l~~~~~~~i~l~G~S~GG~~a~~~a~~~ 42 (52)
++++.+++.|.+ .++|.++|.-..|.++..+..+.
T Consensus 118 ~~l~~av~~L~~--A~rI~~~G~g~S~~vA~~~~~~l 152 (281)
T COG1737 118 EALERAVELLAK--ARRIYFFGLGSSGLVASDLAYKL 152 (281)
T ss_pred HHHHHHHHHHHc--CCeEEEEEechhHHHHHHHHHHH
Confidence 456667776654 47899999877888888777553
No 426
>PRK08259 enoyl-CoA hydratase; Provisional
Probab=47.39 E-value=14 Score=21.02 Aligned_cols=18 Identities=22% Similarity=0.451 Sum_probs=14.9
Q ss_pred EEEEEchHHHHHHHHHhh
Q 038643 24 GMVGYCMGSALTIACSAS 41 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~ 41 (52)
.+-|+++||...+.+++-
T Consensus 99 av~G~a~GgG~~lalacD 116 (254)
T PRK08259 99 AVSGYAVAGGLELALWCD 116 (254)
T ss_pred EECCEEEhHHHHHHHhCC
Confidence 356999999999998854
No 427
>PRK05665 amidotransferase; Provisional
Probab=47.30 E-value=39 Score=19.25 Aligned_cols=30 Identities=17% Similarity=0.246 Sum_probs=16.5
Q ss_pred HHHHHHHHhcCCCcEEEEEEchHHHHHHHH
Q 038643 9 SASVDWLKANGSKKVGMVGYCMGSALTIAC 38 (52)
Q Consensus 9 ~~~~~~l~~~~~~~i~l~G~S~GG~~a~~~ 38 (52)
....+|+++.-..++=++|.|+|..+....
T Consensus 78 ~~l~~~i~~~~~~~~PilGIC~GhQlla~A 107 (240)
T PRK05665 78 QTLKTYLLKLYERGDKLLGVCFGHQLLALL 107 (240)
T ss_pred HHHHHHHHHHHhcCCCEEEEeHHHHHHHHH
Confidence 334444443311233489999999654443
No 428
>PRK02947 hypothetical protein; Provisional
Probab=47.22 E-value=53 Score=18.68 Aligned_cols=38 Identities=11% Similarity=0.057 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHhc--CCCcEEEEEEchHHHHHHHHHhh
Q 038643 4 VVADISASVDWLKAN--GSKKVGMVGYCMGSALTIACSAS 41 (52)
Q Consensus 4 ~~~d~~~~~~~l~~~--~~~~i~l~G~S~GG~~a~~~a~~ 41 (52)
..++++.+++.+.+. ...+|.++|....+.++..+..+
T Consensus 22 ~~e~i~~aa~lla~~i~~a~~I~i~G~G~S~~vA~~~~~r 61 (246)
T PRK02947 22 QAEAIEKAADLIADSIRNGGLIYVFGTGHSHILAEEVFYR 61 (246)
T ss_pred hHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHhccc
Confidence 345666777666543 35789999987777777765543
No 429
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=47.04 E-value=55 Score=19.71 Aligned_cols=31 Identities=19% Similarity=0.297 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEEchHHHHHHHHH
Q 038643 6 ADISASVDWLKANGSKKVGMVGYCMGSALTIACS 39 (52)
Q Consensus 6 ~d~~~~~~~l~~~~~~~i~l~G~S~GG~~a~~~a 39 (52)
.|.....+++.....+++.++|- |..++.+|
T Consensus 123 ~~~~~~~~~l~~~~~~~vvViGg---G~~g~e~A 153 (427)
T TIGR03385 123 EDTDAIKQYIDKNKVENVVIIGG---GYIGIEMA 153 (427)
T ss_pred HHHHHHHHHHhhcCCCeEEEECC---CHHHHHHH
Confidence 34444445554334578999984 44444444
No 430
>KOG2214 consensus Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=46.76 E-value=20 Score=23.24 Aligned_cols=33 Identities=9% Similarity=-0.037 Sum_probs=22.6
Q ss_pred HHHHHHhcCCCcEEEEEEchHHHHHHHHHhhcC
Q 038643 11 SVDWLKANGSKKVGMVGYCMGSALTIACSASLM 43 (52)
Q Consensus 11 ~~~~l~~~~~~~i~l~G~S~GG~~a~~~a~~~p 43 (52)
+++-|.+++.-+=++-|-|+|+.+|..++.+..
T Consensus 192 VlrtL~e~dLlP~IIsGsS~GaivAsl~~v~~~ 224 (543)
T KOG2214|consen 192 VLRTLLEQDLLPNIISGSSAGAIVASLVGVRSN 224 (543)
T ss_pred HHHHHHHccccchhhcCCchhHHHHHHHhhcch
Confidence 344455554333357899999999999887653
No 431
>COG0431 Predicted flavoprotein [General function prediction only]
Probab=46.31 E-value=29 Score=18.81 Aligned_cols=32 Identities=25% Similarity=0.473 Sum_probs=22.0
Q ss_pred HHHHHHHHHhcC--CCcEEEEEEchHHHHHHHHH
Q 038643 8 ISASVDWLKANG--SKKVGMVGYCMGSALTIACS 39 (52)
Q Consensus 8 ~~~~~~~l~~~~--~~~i~l~G~S~GG~~a~~~a 39 (52)
+..++||+.... .+++.+++.|.|+.-.....
T Consensus 86 lKnaiD~l~~~~~~~Kpv~~~~~s~g~~~~~~a~ 119 (184)
T COG0431 86 LKNAIDWLSREALGGKPVLLLGTSGGGAGGLRAQ 119 (184)
T ss_pred HHHHHHhCCHhHhCCCcEEEEecCCCchhHHHHH
Confidence 456788876652 57778888888776665443
No 432
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=46.28 E-value=69 Score=19.74 Aligned_cols=32 Identities=25% Similarity=0.324 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEEchHHHHHHHHHh
Q 038643 6 ADISASVDWLKANGSKKVGMVGYCMGSALTIACSA 40 (52)
Q Consensus 6 ~d~~~~~~~l~~~~~~~i~l~G~S~GG~~a~~~a~ 40 (52)
+|+.++..++. .+++.++|.-+.|.-+..+..
T Consensus 3 ~~~~~~~~~~~---~~~i~v~G~G~sG~a~a~~L~ 34 (458)
T PRK01710 3 RDFNEFKKFIK---NKKVAVVGIGVSNIPLIKFLV 34 (458)
T ss_pred chHHHHhhhhc---CCeEEEEcccHHHHHHHHHHH
Confidence 46777777765 468999999999986555543
No 433
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=45.07 E-value=52 Score=17.92 Aligned_cols=37 Identities=16% Similarity=0.121 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHhcCCCcEE-EEEEchHHHHHHHHHhh
Q 038643 5 VADISASVDWLKANGSKKVG-MVGYCMGSALTIACSAS 41 (52)
Q Consensus 5 ~~d~~~~~~~l~~~~~~~i~-l~G~S~GG~~a~~~a~~ 41 (52)
+.......+.+...+.+-+. +-|++.|+...+.+++.
T Consensus 44 v~~~~~I~~~l~~~~~pvva~V~g~AaSaG~~ia~a~d 81 (178)
T cd07021 44 VDSALEIVDLILNSPIPTIAYVNDRAASAGALIALAAD 81 (178)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCchHHHHHHHHHhCC
Confidence 34555566666555422222 33677766666665543
No 434
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=44.79 E-value=17 Score=15.53 Aligned_cols=25 Identities=20% Similarity=0.476 Sum_probs=13.9
Q ss_pred HHHHHHHHhcCCCcEEEEEEchHHH
Q 038643 9 SASVDWLKANGSKKVGMVGYCMGSA 33 (52)
Q Consensus 9 ~~~~~~l~~~~~~~i~l~G~S~GG~ 33 (52)
...++++.+.......++|.|.|..
T Consensus 66 ~~~~~~~~~~~~~~~~i~~~~~g~~ 90 (92)
T cd03128 66 EALLALLREAAAAGKPVLGICLGAQ 90 (92)
T ss_pred HHHHHHHHHHHHcCCEEEEEecccc
Confidence 3444555444323455778888764
No 435
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=44.60 E-value=19 Score=22.12 Aligned_cols=31 Identities=16% Similarity=0.264 Sum_probs=22.3
Q ss_pred CCcEEEEEEchHHHHHHHHHhhcCCceeEeeeC
Q 038643 20 SKKVGMVGYCMGSALTIACSASLMERKHTFRMN 52 (52)
Q Consensus 20 ~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~~~ 52 (52)
..+|..+| -||.-.+.+.++.|..+.++-+|
T Consensus 64 ghrivtig--SGGcn~L~ylsr~Pa~id~VDlN 94 (414)
T COG5379 64 GHRIVTIG--SGGCNMLAYLSRAPARIDVVDLN 94 (414)
T ss_pred CcEEEEec--CCcchHHHHhhcCCceeEEEeCC
Confidence 45666666 46665666667889999988877
No 436
>TIGR02815 agaS_fam putative sugar isomerase, AgaS family. Some members of this protein family are found in regions associated with N-acetyl-galactosamine and galactosamine untilization and are suggested to be isomerases.
Probab=44.58 E-value=71 Score=19.34 Aligned_cols=23 Identities=17% Similarity=0.224 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEE
Q 038643 5 VADISASVDWLKANGSKKVGMVG 27 (52)
Q Consensus 5 ~~d~~~~~~~l~~~~~~~i~l~G 27 (52)
.+++..+++.+..++.++|.++|
T Consensus 27 ~~~~~~~~~~~~~~~~~~i~~~g 49 (372)
T TIGR02815 27 RPALNAFLEPLLARENLRIVLTG 49 (372)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEe
Confidence 35566666666666667898887
No 437
>TIGR03607 patatin-related protein. This bacterial protein family contains an N-terminal patatin domain, where patatins are plant storage proteins capable of phospholipase activity (see pfam01734). Regions of strong sequence conservation are separated by regions of significant sequence and length variability. Members of the family are distributed sporadically among bacteria. The function is unknown.
Probab=44.43 E-value=78 Score=21.43 Aligned_cols=17 Identities=12% Similarity=0.075 Sum_probs=15.2
Q ss_pred EEEEEchHHHHHHHHHh
Q 038643 24 GMVGYCMGSALTIACSA 40 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~ 40 (52)
.+.|.|.||..+..+|+
T Consensus 69 ~iaGTSAGAInaa~lA~ 85 (739)
T TIGR03607 69 VISGTSAGGINGVLLAY 85 (739)
T ss_pred eEEeeCHHHHHHHHHHc
Confidence 58899999999998886
No 438
>PLN02888 enoyl-CoA hydratase
Probab=43.96 E-value=15 Score=21.07 Aligned_cols=18 Identities=17% Similarity=0.462 Sum_probs=14.9
Q ss_pred EEEEEchHHHHHHHHHhh
Q 038643 24 GMVGYCMGSALTIACSAS 41 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~ 41 (52)
.+-|+++||.+.+.+++-
T Consensus 105 av~G~a~GgG~~lal~cD 122 (265)
T PLN02888 105 AINGFAITAGFEIALACD 122 (265)
T ss_pred EECCeeechHHHHHHhCC
Confidence 356999999999988854
No 439
>COG4667 Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=43.79 E-value=34 Score=20.49 Aligned_cols=23 Identities=22% Similarity=0.176 Sum_probs=19.0
Q ss_pred EEEEEchHHHHHHHHHhhcCCce
Q 038643 24 GMVGYCMGSALTIACSASLMERK 46 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~~p~~~ 46 (52)
.++|.|+|+.-...+.++.|.+.
T Consensus 43 ~~~GvSAGA~n~~aYls~Q~gra 65 (292)
T COG4667 43 LVVGVSAGALNLVAYLSKQRGRA 65 (292)
T ss_pred eeeeecHhHHhHHHHhhcCCchH
Confidence 57899999999998888877653
No 440
>COG4475 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.44 E-value=58 Score=18.01 Aligned_cols=27 Identities=11% Similarity=0.191 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHhcC---CCcEEEEEEch
Q 038643 4 VVADISASVDWLKANG---SKKVGMVGYCM 30 (52)
Q Consensus 4 ~~~d~~~~~~~l~~~~---~~~i~l~G~S~ 30 (52)
..+|.+..++.++++. ...++++|.|-
T Consensus 4 l~k~~~~vl~d~~~~s~lk~g~lfvlG~St 33 (180)
T COG4475 4 LKKDTRTVLDDVQDQSELKQGQLFVLGLST 33 (180)
T ss_pred HHHHHHHHHHHHHHhhccCCCCEEEEecch
Confidence 5678888887777763 67899999986
No 441
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.23 E-value=52 Score=17.41 Aligned_cols=29 Identities=21% Similarity=0.358 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhcCCCcEEEEEEchHHHHHHH
Q 038643 6 ADISASVDWLKANGSKKVGMVGYCMGSALTIA 37 (52)
Q Consensus 6 ~d~~~~~~~l~~~~~~~i~l~G~S~GG~~a~~ 37 (52)
+|++.+.+.+.+.. .+ +++||-.|.=++.
T Consensus 74 ~dV~~f~~Al~eae-gP--VlayCrsGtRs~~ 102 (130)
T COG3453 74 ADVEAFQRALDEAE-GP--VLAYCRSGTRSLN 102 (130)
T ss_pred HHHHHHHHHHHHhC-CC--EEeeecCCchHHH
Confidence 45666666665542 22 6899987754443
No 442
>PRK08202 purine nucleoside phosphorylase; Provisional
Probab=43.05 E-value=53 Score=19.04 Aligned_cols=25 Identities=8% Similarity=0.324 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhcC---CCcEEEEEEc
Q 038643 5 VADISASVDWLKANG---SKKVGMVGYC 29 (52)
Q Consensus 5 ~~d~~~~~~~l~~~~---~~~i~l~G~S 29 (52)
.+++..+.+|++++. ..+++++|-|
T Consensus 3 ~~~~~~~~~~i~~~~~~~~~~i~iI~Gs 30 (272)
T PRK08202 3 LEKIEEAAAFIREKTGAFKPEIGLILGS 30 (272)
T ss_pred hHHHHHHHHHHHHhcCCCCCCEEEEeCC
Confidence 467788888888763 3688888655
No 443
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=42.38 E-value=30 Score=15.46 Aligned_cols=27 Identities=22% Similarity=0.485 Sum_probs=17.3
Q ss_pred HHHHHHHHhcCCCcEEEEEEchHHHHH
Q 038643 9 SASVDWLKANGSKKVGMVGYCMGSALT 35 (52)
Q Consensus 9 ~~~~~~l~~~~~~~i~l~G~S~GG~~a 35 (52)
...++++++.......++|.|.|....
T Consensus 66 ~~~~~~i~~~~~~~~~i~~~c~g~~~l 92 (115)
T cd01653 66 EALLALLREAAAAGKPILGICLGAQLL 92 (115)
T ss_pred HHHHHHHHHHHHcCCEEEEECchhHhH
Confidence 445566665543455678889887765
No 444
>COG3621 Patatin [General function prediction only]
Probab=42.19 E-value=24 Score=21.87 Aligned_cols=19 Identities=16% Similarity=0.281 Sum_probs=15.8
Q ss_pred EEEEchHHHHHHHHHhhcC
Q 038643 25 MVGYCMGSALTIACSASLM 43 (52)
Q Consensus 25 l~G~S~GG~~a~~~a~~~p 43 (52)
+-|.|-||.+++.+|.-.+
T Consensus 46 ~~GTSiGgilal~La~~ks 64 (394)
T COG3621 46 IGGTSIGGILALGLALGKS 64 (394)
T ss_pred ecCccHHHHHHHHHhcCCC
Confidence 4599999999999997544
No 445
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=42.13 E-value=68 Score=18.43 Aligned_cols=38 Identities=18% Similarity=0.183 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhc--CCCcEEEEEEchHHHHHHHHHhhcC
Q 038643 6 ADISASVDWLKAN--GSKKVGMVGYCMGSALTIACSASLM 43 (52)
Q Consensus 6 ~d~~~~~~~l~~~--~~~~i~l~G~S~GG~~a~~~a~~~p 43 (52)
+.+..+++.+.+. ...+++.+|.--.|.++...+...|
T Consensus 33 ~~I~~av~~~~~~l~~ggrl~~~GaGtSg~la~~da~e~~ 72 (257)
T cd05007 33 PQIARAVDAAAERLRAGGRLIYVGAGTSGRLGVLDASELP 72 (257)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEcCcHHHHHHHHHHHhcc
Confidence 3444444444333 2578999998888888876665543
No 446
>PF14084 DUF4264: Protein of unknown function (DUF4264)
Probab=42.10 E-value=36 Score=15.21 Aligned_cols=26 Identities=27% Similarity=0.268 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEEch
Q 038643 5 VADISASVDWLKANGSKKVGMVGYCM 30 (52)
Q Consensus 5 ~~d~~~~~~~l~~~~~~~i~l~G~S~ 30 (52)
.+|+-.++|+|...-.++=.++|.|.
T Consensus 13 ~~dlYKvVDfLNktLK~~~lmFGLs~ 38 (52)
T PF14084_consen 13 NDDLYKVVDFLNKTLKDKNLMFGLSK 38 (52)
T ss_pred CccHHHHHHHHhhhhhhccEEEEEee
Confidence 35778889998766445556888875
No 447
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=41.84 E-value=45 Score=17.74 Aligned_cols=17 Identities=24% Similarity=0.534 Sum_probs=12.1
Q ss_pred cEEEEEEchHHHHHHHH
Q 038643 22 KVGMVGYCMGSALTIAC 38 (52)
Q Consensus 22 ~i~l~G~S~GG~~a~~~ 38 (52)
.+-++|.|+|-.+....
T Consensus 81 ~~pilgiC~G~q~l~~~ 97 (188)
T cd01741 81 GKPVLGICLGHQLLARA 97 (188)
T ss_pred CCCEEEECccHHHHHHH
Confidence 35589999998765443
No 448
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=41.38 E-value=48 Score=20.03 Aligned_cols=21 Identities=33% Similarity=0.600 Sum_probs=17.2
Q ss_pred CCcEEEEEE-chHHHHHHHHHh
Q 038643 20 SKKVGMVGY-CMGSALTIACSA 40 (52)
Q Consensus 20 ~~~i~l~G~-S~GG~~a~~~a~ 40 (52)
..+|+++|. +||..++..+..
T Consensus 17 gktIgIIG~GsmG~AlA~~L~~ 38 (330)
T PRK05479 17 GKKVAIIGYGSQGHAHALNLRD 38 (330)
T ss_pred CCEEEEEeeHHHHHHHHHHHHH
Confidence 468999988 899998888764
No 449
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=41.34 E-value=48 Score=16.48 Aligned_cols=39 Identities=10% Similarity=0.066 Sum_probs=26.6
Q ss_pred HHHHhcCCCcEEEEEEchHH--HHHHHHHhhcCCceeEeee
Q 038643 13 DWLKANGSKKVGMVGYCMGS--ALTIACSASLMERKHTFRM 51 (52)
Q Consensus 13 ~~l~~~~~~~i~l~G~S~GG--~~a~~~a~~~p~~~~~~~~ 51 (52)
+.++..+..+++++|=|=-. -+-..++.++|+++.++-|
T Consensus 57 ~i~~~fP~~kfiLIGDsgq~DpeiY~~ia~~~P~~i~ai~I 97 (100)
T PF09949_consen 57 RILRDFPERKFILIGDSGQHDPEIYAEIARRFPGRILAIYI 97 (100)
T ss_pred HHHHHCCCCcEEEEeeCCCcCHHHHHHHHHHCCCCEEEEEE
Confidence 33444467899999987654 3344566789999888754
No 450
>TIGR00249 sixA phosphohistidine phosphatase SixA.
Probab=40.81 E-value=56 Score=17.07 Aligned_cols=24 Identities=21% Similarity=0.134 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhcCCCcEEEEEEch
Q 038643 7 DISASVDWLKANGSKKVGMVGYCM 30 (52)
Q Consensus 7 d~~~~~~~l~~~~~~~i~l~G~S~ 30 (52)
++...++.+.....+.+.++||.=
T Consensus 87 ~~~~~l~~~~~~~~~~vliVgH~P 110 (152)
T TIGR00249 87 LVSDYLEALTNEGVASVLLVSHLP 110 (152)
T ss_pred HHHHHHHHHHhcCCCEEEEEeCCC
Confidence 344444433332346799999964
No 451
>PF04260 DUF436: Protein of unknown function (DUF436) ; InterPro: IPR006340 Members of this family are uncharacterised proteins of about 180 amino acids from the Bacillus/Clostridium group of Gram-positive bacteria, found in no more than one copy per genome. ; PDB: 1V8D_C.
Probab=40.52 E-value=64 Score=17.92 Aligned_cols=24 Identities=13% Similarity=0.216 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhc---CCCcEEEEEEch
Q 038643 7 DISASVDWLKAN---GSKKVGMVGYCM 30 (52)
Q Consensus 7 d~~~~~~~l~~~---~~~~i~l~G~S~ 30 (52)
++..+++.+.+. ...++.++|-|-
T Consensus 2 q~~~~~~El~~~a~l~~g~i~VvGcST 28 (172)
T PF04260_consen 2 QLRQALEELLEQANLKPGQIFVVGCST 28 (172)
T ss_dssp -HHHHHHHHHHHS---TT-EEEEEE-H
T ss_pred hHHHHHHHHHHhcCCCCCCEEEEeeeH
Confidence 445555444443 267899999986
No 452
>PRK10848 phosphohistidine phosphatase; Provisional
Probab=40.44 E-value=58 Score=17.19 Aligned_cols=22 Identities=23% Similarity=0.143 Sum_probs=13.4
Q ss_pred HHHHHHHHhcCCCcEEEEEEch
Q 038643 9 SASVDWLKANGSKKVGMVGYCM 30 (52)
Q Consensus 9 ~~~~~~l~~~~~~~i~l~G~S~ 30 (52)
...++.+...+.+.+.++||.=
T Consensus 89 ~~~l~~~~~~~~~~vllVgH~P 110 (159)
T PRK10848 89 SAYLQALANEGVASVLVISHLP 110 (159)
T ss_pred HHHHHHHHhcCCCeEEEEeCcC
Confidence 3444444433356899999964
No 453
>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C ....
Probab=39.79 E-value=57 Score=16.89 Aligned_cols=31 Identities=23% Similarity=0.509 Sum_probs=21.3
Q ss_pred HHHHHHHHhcCCCcEEEEEEchHHHHHHHHH
Q 038643 9 SASVDWLKANGSKKVGMVGYCMGSALTIACS 39 (52)
Q Consensus 9 ~~~~~~l~~~~~~~i~l~G~S~GG~~a~~~a 39 (52)
...++|+++...+...+.+.|-|..+.....
T Consensus 80 ~~l~~~l~~~~~~~~~i~aic~G~~~La~aG 110 (166)
T PF13278_consen 80 PALLDWLRQQHAQGTYIAAICTGALLLAEAG 110 (166)
T ss_dssp HHHHHHHHHHHCCTSEEEEETTHHHHHHHTT
T ss_pred HHHHHHhhhhhccceEEeeeehHHHHHhhhh
Confidence 5677888776445567889897776655443
No 454
>PF12641 Flavodoxin_3: Flavodoxin domain
Probab=39.57 E-value=63 Score=17.34 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=15.8
Q ss_pred HHHHHHhcCCCcEEEEEEchHH
Q 038643 11 SVDWLKANGSKKVGMVGYCMGS 32 (52)
Q Consensus 11 ~~~~l~~~~~~~i~l~G~S~GG 32 (52)
+.+||.+...++|+++|.+-.+
T Consensus 58 ~~~fl~~l~~KkV~lF~T~G~~ 79 (160)
T PF12641_consen 58 MKEFLKKLKGKKVALFGTAGAG 79 (160)
T ss_pred HHHHHHHccCCeEEEEEecCCC
Confidence 4456666667899999988544
No 455
>PF00300 His_Phos_1: Histidine phosphatase superfamily (branch 1); InterPro: IPR013078 The histidine phosphatase superfamily is so named because catalysis centres on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The relationship between the two branches is not evident by (PSI-)BLAST but is clear from more sensitive sequence searches and structural comparisons []. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members. Phosphoglycerate mutase (5.4.2.1 from EC) (PGAM) and bisphosphoglycerate mutase (5.4.2.4 from EC) (BPGM) are structurally related enzymes that catalyse reactions involving the transfer of phospho groups between the three carbon atoms of phosphoglycerate [, , ]. Both enzymes can catalyse three different reactions with different specificities, the isomerization of 2-phosphoglycerate (2-PGA) to 3-phosphoglycerate (3-PGA) with 2,3-diphosphoglycerate (2,3-DPG) as the primer of the reaction, the synthesis of 2,3-DPG from 1,3-DPG with 3-PGA as a primer and the degradation of 2,3-DPG to 3-PGA (phosphatase 3.1.3.13 from EC activity). In mammals, PGAM is a dimeric protein with two isoforms, the M (muscle) and B (brain) forms. In yeast, PGAM is a tetrameric protein. BPGM is a dimeric protein and is found mainly in erythrocytes where it plays a major role in regulating haemoglobin oxygen affinity as a consequence of controlling 2,3-DPG concentration. The catalytic mechanism of both PGAM and BPGM involves the formation of a phosphohistidine intermediate []. A number of other proteins including, the bifunctional enzyme 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase [] that catalyses both the synthesis and the degradation of fructose-2,6-bisphosphate and bacterial alpha-ribazole-5'-phosphate phosphatase, which is involved in cobalamin biosynthesis, contain this domain [].; PDB: 1C80_A 1C7Z_B 1TIP_B 1C81_A 1FBT_A 1RII_B 3OI7_B 3LL4_A 3LG2_B 3F3K_B ....
Probab=39.47 E-value=52 Score=16.38 Aligned_cols=27 Identities=19% Similarity=0.046 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHh--cCCCcEEEEEEch
Q 038643 4 VVADISASVDWLKA--NGSKKVGMVGYCM 30 (52)
Q Consensus 4 ~~~d~~~~~~~l~~--~~~~~i~l~G~S~ 30 (52)
...-+..+++.+.. .+.+.+.+++|..
T Consensus 125 ~~~R~~~~~~~l~~~~~~~~~vliVsHg~ 153 (158)
T PF00300_consen 125 FQQRVKQFLDELIAYKRPGENVLIVSHGG 153 (158)
T ss_dssp HHHHHHHHHHHHHHHHHTTSEEEEEE-HH
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEEecHH
Confidence 34455667777763 4568888998753
No 456
>PRK14538 putative bifunctional signaling protein/50S ribosomal protein L9; Provisional
Probab=39.31 E-value=1.3e+02 Score=20.76 Aligned_cols=22 Identities=18% Similarity=0.200 Sum_probs=18.0
Q ss_pred CCcEEEEEE------chHHHHHHHHHhh
Q 038643 20 SKKVGMVGY------CMGSALTIACSAS 41 (52)
Q Consensus 20 ~~~i~l~G~------S~GG~~a~~~a~~ 41 (52)
.+++.++|| |+|+.+++...++
T Consensus 367 ~d~ViI~gH~nPD~DAlGSalaL~~~lk 394 (838)
T PRK14538 367 NPHCFIMGHNHTDLDSLGSMIAFYKIAL 394 (838)
T ss_pred CCeEEEEecCCCCchHHHHHHHHHHHHH
Confidence 579999998 6799998887653
No 457
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=39.01 E-value=72 Score=19.84 Aligned_cols=6 Identities=17% Similarity=0.866 Sum_probs=2.7
Q ss_pred cEEEEE
Q 038643 22 KVGMVG 27 (52)
Q Consensus 22 ~i~l~G 27 (52)
+|.++|
T Consensus 3 ~VaILG 8 (385)
T PRK05447 3 RITILG 8 (385)
T ss_pred eEEEEc
Confidence 344444
No 458
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=38.71 E-value=63 Score=18.80 Aligned_cols=31 Identities=13% Similarity=0.063 Sum_probs=16.9
Q ss_pred CCCcEEEEEEchHHHHHHHHHhhcCCceeEee
Q 038643 19 GSKKVGMVGYCMGSALTIACSASLMERKHTFR 50 (52)
Q Consensus 19 ~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~ 50 (52)
+..+|-=+|--|||. +..++.++.-.+.++.
T Consensus 62 ~G~~vLDiGcGwG~~-~~~~a~~~g~~v~git 92 (273)
T PF02353_consen 62 PGDRVLDIGCGWGGL-AIYAAERYGCHVTGIT 92 (273)
T ss_dssp TT-EEEEES-TTSHH-HHHHHHHH--EEEEEE
T ss_pred CCCEEEEeCCCccHH-HHHHHHHcCcEEEEEE
Confidence 457888889888776 4555655533444443
No 459
>PRK07053 glutamine amidotransferase; Provisional
Probab=38.57 E-value=44 Score=18.90 Aligned_cols=30 Identities=17% Similarity=0.380 Sum_probs=17.3
Q ss_pred HHHHHHHhcCCCcEEEEEEchHHHHHHHHH
Q 038643 10 ASVDWLKANGSKKVGMVGYCMGSALTIACS 39 (52)
Q Consensus 10 ~~~~~l~~~~~~~i~l~G~S~GG~~a~~~a 39 (52)
...+++++.-...+=++|.|+|..+.....
T Consensus 71 ~~~~~i~~~~~~~~PvlGIC~G~Qlla~al 100 (234)
T PRK07053 71 PEIALLRQRLAAGLPTLGICLGAQLIARAL 100 (234)
T ss_pred HHHHHHHHHHHCCCCEEEECccHHHHHHHc
Confidence 344444432122345899999997755543
No 460
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=38.45 E-value=42 Score=20.63 Aligned_cols=46 Identities=13% Similarity=0.114 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEEEchHHHHHHHHHhhcCCceeEeeeC
Q 038643 5 VADISASVDWLKANGSKKVGMVGYCMGSALTIACSASLMERKHTFRMN 52 (52)
Q Consensus 5 ~~d~~~~~~~l~~~~~~~i~l~G~S~GG~~a~~~a~~~p~~~~~~~~~ 52 (52)
++|-+.=.+.|+-.+.+.|..+ +-||--++.+....|..+-+|=+|
T Consensus 21 WEDp~vD~~aL~i~~~d~vl~I--tSaG~N~L~yL~~~P~~I~aVDlN 66 (380)
T PF11899_consen 21 WEDPRVDMEALNIGPDDRVLTI--TSAGCNALDYLLAGPKRIHAVDLN 66 (380)
T ss_pred cCCcHHHHHHhCCCCCCeEEEE--ccCCchHHHHHhcCCceEEEEeCC
Confidence 3444444454544444555444 455666777788899999888776
No 461
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=38.24 E-value=29 Score=16.95 Aligned_cols=23 Identities=35% Similarity=0.452 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhc-CCCcEEEEEEc
Q 038643 7 DISASVDWLKAN-GSKKVGMVGYC 29 (52)
Q Consensus 7 d~~~~~~~l~~~-~~~~i~l~G~S 29 (52)
-...+.+|++++ +..++.++|..
T Consensus 66 s~~~~~~~l~~~~~~~~v~vlG~~ 89 (101)
T PF13344_consen 66 SGMAAAEYLKEHKGGKKVYVLGSD 89 (101)
T ss_dssp HHHHHHHHHHHHTTSSEEEEES-H
T ss_pred hHHHHHHHHHhcCCCCEEEEEcCH
Confidence 345566777763 45677777743
No 462
>PRK08321 naphthoate synthase; Validated
Probab=38.23 E-value=76 Score=18.59 Aligned_cols=25 Identities=8% Similarity=0.120 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHHHHhcCCCcEEEE
Q 038643 2 VGVVADISASVDWLKANGSKKVGMV 26 (52)
Q Consensus 2 ~~~~~d~~~~~~~l~~~~~~~i~l~ 26 (52)
...+.++..+++.+...+.-++.++
T Consensus 51 ~~~~~~l~~al~~~~~d~~vrvvVl 75 (302)
T PRK08321 51 PHTVDELYRALDHARMSPDVGCVLL 75 (302)
T ss_pred HHHHHHHHHHHHHHhhCCCcEEEEE
Confidence 3567788888888876554344433
No 463
>PRK06193 hypothetical protein; Provisional
Probab=38.20 E-value=59 Score=18.30 Aligned_cols=21 Identities=14% Similarity=-0.004 Sum_probs=13.3
Q ss_pred HHHHHHHhcC--CCcEEEEEEch
Q 038643 10 ASVDWLKANG--SKKVGMVGYCM 30 (52)
Q Consensus 10 ~~~~~l~~~~--~~~i~l~G~S~ 30 (52)
.+.++++..+ .+++.++||..
T Consensus 143 ~l~~~I~~l~~~~~~vLlVgHnp 165 (206)
T PRK06193 143 GLRPLLTTPPDPGTNTVLVGHDD 165 (206)
T ss_pred HHHHHHhhCCCCCCeEEEEeCch
Confidence 3344444432 46799999995
No 464
>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.
Probab=38.00 E-value=12 Score=19.18 Aligned_cols=13 Identities=31% Similarity=0.654 Sum_probs=11.0
Q ss_pred EEEEEEchHHHHH
Q 038643 23 VGMVGYCMGSALT 35 (52)
Q Consensus 23 i~l~G~S~GG~~a 35 (52)
--++|.|+|+.++
T Consensus 78 ~p~LGIClGAy~a 90 (114)
T cd03144 78 GNYLGICAGAYLA 90 (114)
T ss_pred CcEEEEecCccce
Confidence 3479999999987
No 465
>COG1897 MetA Homoserine trans-succinylase [Amino acid transport and metabolism]
Probab=37.97 E-value=45 Score=19.98 Aligned_cols=33 Identities=12% Similarity=0.331 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEchHHHHHHHHH
Q 038643 4 VVADISASVDWLKANGSKKVGMVGYCMGSALTIACS 39 (52)
Q Consensus 4 ~~~d~~~~~~~l~~~~~~~i~l~G~S~GG~~a~~~a 39 (52)
-++.+...++|.+.+-... +=.|||+..++.+-
T Consensus 120 YW~el~~I~eWskt~V~ST---l~ICWgaqAaly~~ 152 (307)
T COG1897 120 YWEELKQIFEWSKTHVTST---LHICWGAQAALYYF 152 (307)
T ss_pred hHHHHHHHHHHHhhcchhh---hhhHHHHHHHHHHH
Confidence 4677888899988763232 22399999888775
No 466
>PRK07799 enoyl-CoA hydratase; Provisional
Probab=37.75 E-value=18 Score=20.55 Aligned_cols=18 Identities=11% Similarity=0.161 Sum_probs=15.0
Q ss_pred EEEEEchHHHHHHHHHhh
Q 038643 24 GMVGYCMGSALTIACSAS 41 (52)
Q Consensus 24 ~l~G~S~GG~~a~~~a~~ 41 (52)
.+-|+++||...+.+++.
T Consensus 106 av~G~a~GgG~~lalacD 123 (263)
T PRK07799 106 AVEGPAIAGGTEILQGTD 123 (263)
T ss_pred EECCeEeccHHHHHHhCC
Confidence 366999999999988864
No 467
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=37.33 E-value=75 Score=17.54 Aligned_cols=17 Identities=24% Similarity=0.384 Sum_probs=13.5
Q ss_pred CcEEEEEEchHHHHHHH
Q 038643 21 KKVGMVGYCMGSALTIA 37 (52)
Q Consensus 21 ~~i~l~G~S~GG~~a~~ 37 (52)
+...++|.|.|..+...
T Consensus 113 ~g~~i~G~SAGa~i~~~ 129 (212)
T cd03146 113 RGVVYIGWSAGSNCWFP 129 (212)
T ss_pred CCCEEEEECHhHHhhCC
Confidence 34679999999988766
No 468
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=37.16 E-value=65 Score=16.81 Aligned_cols=25 Identities=16% Similarity=0.082 Sum_probs=18.2
Q ss_pred hhHHHHHHHHHHHHHhcCCCcEEEE
Q 038643 2 VGVVADISASVDWLKANGSKKVGMV 26 (52)
Q Consensus 2 ~~~~~d~~~~~~~l~~~~~~~i~l~ 26 (52)
..+.+|++.+++.+++.+.+.++++
T Consensus 32 SpEy~Dl~l~L~~~k~~g~~~lfVi 56 (130)
T PF04914_consen 32 SPEYDDLQLLLDVCKELGIDVLFVI 56 (130)
T ss_dssp -THHHHHHHHHHHHHHTT-EEEEEE
T ss_pred CccHHHHHHHHHHHHHcCCceEEEe
Confidence 3578899999999998876655544
No 469
>PF05139 Erythro_esteras: Erythromycin esterase; InterPro: IPR007815 This family includes erythromycin esterase enzymes [, ] that confer resistance to the erythromycin antibiotic.; GO: 0046677 response to antibiotic; PDB: 2QGM_A 3B55_A 2RAD_B.
Probab=37.02 E-value=64 Score=18.97 Aligned_cols=27 Identities=19% Similarity=0.507 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHhcC-----CCcEEEEEEchH
Q 038643 5 VADISASVDWLKANG-----SKKVGMVGYCMG 31 (52)
Q Consensus 5 ~~d~~~~~~~l~~~~-----~~~i~l~G~S~G 31 (52)
.+++..+++||++.. .++|.+.|..+-
T Consensus 40 t~E~~~L~~WmR~~N~~~~~~~~v~f~G~D~q 71 (346)
T PF05139_consen 40 TEEMLDLFEWMREYNEDRPPGDKVRFYGFDMQ 71 (346)
T ss_dssp CHHHHHHHHHHHHHHHSTT-SS--EEEEEE-S
T ss_pred cHHHHHHHHHHHHHhccCCCCCceEEEEeccc
Confidence 357788889998852 588999999986
No 470
>cd00431 cysteine_hydrolases Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It also contains isochorismatase, an enzyme that catalyzes the conversion of isochorismate to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of the vinyl ether bond, and other related enzymes with unknown function.
Probab=36.85 E-value=56 Score=16.72 Aligned_cols=24 Identities=13% Similarity=0.223 Sum_probs=18.1
Q ss_pred HHHHHHhcCCCcEEEEEEchHHHH
Q 038643 11 SVDWLKANGSKKVGMVGYCMGSAL 34 (52)
Q Consensus 11 ~~~~l~~~~~~~i~l~G~S~GG~~ 34 (52)
..++|++.+.+++.++|.+.-.-+
T Consensus 101 l~~~L~~~~i~~vil~G~~t~~CV 124 (161)
T cd00431 101 LDELLRERGIDTLVVCGIATDICV 124 (161)
T ss_pred HHHHHHHCCCCEEEEEecCcChhH
Confidence 456777777889999998875544
No 471
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=36.81 E-value=45 Score=20.69 Aligned_cols=28 Identities=21% Similarity=0.484 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhcCCCcEEEEEEchHHHH
Q 038643 7 DISASVDWLKANGSKKVGMVGYCMGSAL 34 (52)
Q Consensus 7 d~~~~~~~l~~~~~~~i~l~G~S~GG~~ 34 (52)
+++.+++.+++.-..++=++|.|+|=.+
T Consensus 235 ~~~~~i~~ik~l~~~~iPifGICLGHQl 262 (368)
T COG0505 235 PLDYAIETIKELLGTKIPIFGICLGHQL 262 (368)
T ss_pred HHHHHHHHHHHHhccCCCeEEEcHHHHH
Confidence 4455555555442233458999999755
No 472
>cd07014 S49_SppA Signal peptide peptidase A. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is an intramembrane enzyme found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be ClpP-like serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain, cleaving peptide bonds in the plane of the lipid bilayer. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal p
Probab=36.53 E-value=64 Score=17.14 Aligned_cols=28 Identities=11% Similarity=0.060 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHhcC-CCcEEEEEEchHHH
Q 038643 6 ADISASVDWLKANG-SKKVGMVGYCMGSA 33 (52)
Q Consensus 6 ~d~~~~~~~l~~~~-~~~i~l~G~S~GG~ 33 (52)
+++..+++.+.+.+ .+-|.+-+.|.||.
T Consensus 25 ~~l~~~l~~a~~d~~v~~vvl~~~~~gg~ 53 (177)
T cd07014 25 DTTAAQIRDARLDPKVKAIVLRVNSPGGS 53 (177)
T ss_pred HHHHHHHHHHhcCCCceEEEEEeeCCCcC
Confidence 34444444443332 23344555555554
No 473
>PRK11789 N-acetyl-anhydromuranmyl-L-alanine amidase; Provisional
Probab=36.24 E-value=53 Score=18.23 Aligned_cols=29 Identities=14% Similarity=-0.039 Sum_probs=19.5
Q ss_pred hhHHHHHHHHHHHHHhcC-CCcEEEEEEch
Q 038643 2 VGVVADISASVDWLKANG-SKKVGMVGYCM 30 (52)
Q Consensus 2 ~~~~~d~~~~~~~l~~~~-~~~i~l~G~S~ 30 (52)
+.+.+-+...+++|.++. ..+-.++|||-
T Consensus 129 ~aQ~~aL~~L~~~L~~~y~i~~~~IvGH~d 158 (185)
T PRK11789 129 DAQYQALAALTRALRAAYPIIAERITGHSD 158 (185)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHhEEehhh
Confidence 456677777888877763 22356899974
No 474
>cd07016 S14_ClpP_1 Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. This subfamily only contains bacterial sequences. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which a
Probab=36.20 E-value=68 Score=16.70 Aligned_cols=33 Identities=27% Similarity=0.195 Sum_probs=14.9
Q ss_pred HHHHHHHHHhcCCC-cEEEEEEchHHHHHHHHHh
Q 038643 8 ISASVDWLKANGSK-KVGMVGYCMGSALTIACSA 40 (52)
Q Consensus 8 ~~~~~~~l~~~~~~-~i~l~G~S~GG~~a~~~a~ 40 (52)
.....+.++..+.+ -..+-|++.|+...+.+++
T Consensus 47 ~~~i~~~i~~~~~pvi~~v~g~a~s~g~~ia~a~ 80 (160)
T cd07016 47 GLAIYNALKRHKGKVTVKIDGLAASAASVIAMAG 80 (160)
T ss_pred HHHHHHHHHhcCCCEEEEEcchHHhHHHHHHhcC
Confidence 33444444443211 1233466666655555543
No 475
>cd00394 Clp_protease_like Caseinolytic protease (ClpP) is an ATP-dependent protease. Clp protease (caseinolytic protease; ClpP; endopeptidase Clp; Peptidase S14; ATP-dependent protease, ClpAP)-like enzymes are highly conserved serine proteases and belong to the ClpP/Crotonase superfamily. Included in this family are Clp proteases that are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. They are also implicated in the control of cell growth, targeting DNA-binding protein from starved cells. The functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of protease activity in the presence of ATP. Active site consists of the triad Ser, His and Asp, preferring hydrophobic or non-polar residues at P1 or P1' positions. The protease exists as a tetradec
Probab=36.05 E-value=67 Score=16.60 Aligned_cols=32 Identities=13% Similarity=0.217 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHhcC-CCcEEEEEEchHHHHH
Q 038643 4 VVADISASVDWLKANG-SKKVGMVGYCMGSALT 35 (52)
Q Consensus 4 ~~~d~~~~~~~l~~~~-~~~i~l~G~S~GG~~a 35 (52)
..+++...++.+...+ .+.|.+...|.||.+.
T Consensus 12 ~~~~l~~~l~~a~~d~~~~~ivl~~~s~Gg~~~ 44 (161)
T cd00394 12 SADQLAAQIRFAEADNSVKAIVLEVNTPGGRVD 44 (161)
T ss_pred hHHHHHHHHHHHHhCCCCceEEEEEECCCcCHH
Confidence 3456666666665544 4566677777777543
No 476
>KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism]
Probab=35.84 E-value=38 Score=19.06 Aligned_cols=15 Identities=33% Similarity=0.589 Sum_probs=11.3
Q ss_pred CCcEEEEEEchHHHH
Q 038643 20 SKKVGMVGYCMGSAL 34 (52)
Q Consensus 20 ~~~i~l~G~S~GG~~ 34 (52)
..+|=++|-|||=..
T Consensus 90 ~~~iP~fGvCMGlQC 104 (223)
T KOG0026|consen 90 GPLVPLFGVCMGLQC 104 (223)
T ss_pred CCCCceeeeehhhhh
Confidence 467789999998543
No 477
>cd06143 PAN2_exo DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonuclease PAN2. PAN2 is the catalytic subunit of poly(A) nuclease (PAN), a Pab1p-dependent 3'-5' exoribonuclease which plays an important role in the posttranscriptional maturation of pre-mRNAs. PAN catalyzes the deadenylation of poly(A) tails, which are initially synthesized to default lengths of 70 to 90, to mRNA-specific lengths of 55 to 71. Pab1p and PAN also play a role in the export and decay of mRNA. PAN2 contains a DEDDh-type DnaQ-like 3'-5' exonuclease domain with three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis.
Probab=35.84 E-value=53 Score=18.12 Aligned_cols=12 Identities=17% Similarity=0.088 Sum_probs=9.0
Q ss_pred CcEEEEEEchHH
Q 038643 21 KKVGMVGYCMGS 32 (52)
Q Consensus 21 ~~i~l~G~S~GG 32 (52)
+.-.++|||+--
T Consensus 101 ~~tILVGHsL~n 112 (174)
T cd06143 101 LGCIFVGHGLAK 112 (174)
T ss_pred CCCEEEeccchh
Confidence 344799999866
No 478
>cd07019 S49_SppA_1 Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppAs in this subfamily are found in all three domains of life and are involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Site-directed mutagenesis and sequence analysis have shown these bacterial, archaeal and thylakoid SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad (both residues absolutely conserved within bacteria, chloroplast and mitochondrial signal peptidase family members) and not the usual Ser-His-Asp catalytic triad found in the majority of serine proteases. In addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members, the E. coli SppA contains an amino-te
Probab=35.75 E-value=80 Score=17.41 Aligned_cols=33 Identities=24% Similarity=0.139 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhcCCCcEE--EEEEchHHHHHHHHHh
Q 038643 7 DISASVDWLKANGSKKVG--MVGYCMGSALTIACSA 40 (52)
Q Consensus 7 d~~~~~~~l~~~~~~~i~--l~G~S~GG~~a~~~a~ 40 (52)
++..+++.+++. ++++. +-|++.||...+..++
T Consensus 58 ~~~~~l~~~~~~-~kpVia~v~g~a~s~gy~la~~a 92 (211)
T cd07019 58 VIRAELAAARAA-GKPVVVSAGGAAASGGYWISTPA 92 (211)
T ss_pred HHHHHHHHHHhC-CCCEEEEECCeehhHHHHHHHhC
Confidence 334444444443 23433 2266656655555543
No 479
>cd01826 acyloxyacyl_hydrolase_like Acyloxyacyl-hydrolase like subfamily of the SGNH-hydrolase family. Acyloxyacyl-hydrolase is a leukocyte-secreted enzyme that deacetylates bacterial lipopolysaccharides.
Probab=35.71 E-value=1e+02 Score=18.63 Aligned_cols=30 Identities=17% Similarity=0.292 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHHHHHhcC-C-CcEEEEEEchH
Q 038643 2 VGVVADISASVDWLKANG-S-KKVGMVGYCMG 31 (52)
Q Consensus 2 ~~~~~d~~~~~~~l~~~~-~-~~i~l~G~S~G 31 (52)
++..+++..++++|++.. + .+|.++|.=-|
T Consensus 149 eefr~NL~~~L~~Lr~~lP~~s~ViLvgmpd~ 180 (305)
T cd01826 149 EEFYENVMEALKYLDTKLPNGSHVILVGLVDG 180 (305)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEEEeccch
Confidence 455678999999999883 3 58888875555
No 480
>COG3494 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.67 E-value=79 Score=18.88 Aligned_cols=23 Identities=22% Similarity=0.541 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEE
Q 038643 5 VADISASVDWLKANGSKKVGMVG 27 (52)
Q Consensus 5 ~~d~~~~~~~l~~~~~~~i~l~G 27 (52)
+.++...+++++.+..+++++.|
T Consensus 54 iG~vg~lik~l~~~~v~~vVl~G 76 (279)
T COG3494 54 IGEVGKLIKLLKTEGVDRVVLAG 76 (279)
T ss_pred HHHHHHHHHHHHHcCCcEEEEec
Confidence 56788999999998888888776
No 481
>COG1620 LldP L-lactate permease [Energy production and conversion]
Probab=35.51 E-value=7.7 Score=24.88 Aligned_cols=14 Identities=29% Similarity=0.878 Sum_probs=11.2
Q ss_pred CcEEEEEEchHHHH
Q 038643 21 KKVGMVGYCMGSAL 34 (52)
Q Consensus 21 ~~i~l~G~S~GG~~ 34 (52)
-++.++|||+|+++
T Consensus 103 iQ~llIg~~Fgafl 116 (522)
T COG1620 103 IQLLLIGFCFGAFL 116 (522)
T ss_pred hhhhhHHHHHHHHH
Confidence 35678999999876
No 482
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=35.43 E-value=86 Score=17.70 Aligned_cols=21 Identities=19% Similarity=0.110 Sum_probs=14.5
Q ss_pred cEEEEEEchHHHHHHHHHhhc
Q 038643 22 KVGMVGYCMGSALTIACSASL 42 (52)
Q Consensus 22 ~i~l~G~S~GG~~a~~~a~~~ 42 (52)
+|.++|-..+|..+.....+.
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~ 23 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARA 23 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHT
T ss_pred eEEEECCCHHHHHHHHHHHhc
Confidence 588999999998776666554
No 483
>PRK06490 glutamine amidotransferase; Provisional
Probab=35.36 E-value=61 Score=18.41 Aligned_cols=17 Identities=18% Similarity=0.538 Sum_probs=12.4
Q ss_pred cEEEEEEchHHHHHHHH
Q 038643 22 KVGMVGYCMGSALTIAC 38 (52)
Q Consensus 22 ~i~l~G~S~GG~~a~~~ 38 (52)
++=++|.|+|.-+....
T Consensus 86 ~~PvLGIC~G~Qlla~a 102 (239)
T PRK06490 86 NKPFLGICLGAQMLARH 102 (239)
T ss_pred CCCEEEECHhHHHHHHH
Confidence 34589999999765554
No 484
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=35.30 E-value=41 Score=13.89 Aligned_cols=20 Identities=20% Similarity=0.353 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhcCCCcEEEE
Q 038643 7 DISASVDWLKANGSKKVGMV 26 (52)
Q Consensus 7 d~~~~~~~l~~~~~~~i~l~ 26 (52)
|-....+|++...+++++++
T Consensus 19 d~~~L~~~i~~~~p~~vilV 38 (43)
T PF07521_consen 19 DREELLEFIEQLNPRKVILV 38 (43)
T ss_dssp BHHHHHHHHHHHCSSEEEEE
T ss_pred CHHHHHHHHHhcCCCEEEEe
Confidence 44555566655545666654
No 485
>cd00382 beta_CA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=35.27 E-value=62 Score=16.35 Aligned_cols=29 Identities=24% Similarity=0.312 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhc-CCCcEEEEEEchHHHHH
Q 038643 7 DISASVDWLKAN-GSKKVGMVGYCMGSALT 35 (52)
Q Consensus 7 d~~~~~~~l~~~-~~~~i~l~G~S~GG~~a 35 (52)
++...+.|.... +.+.|.++||+=-|++.
T Consensus 44 ~~~~sl~~av~~l~v~~ivV~gHt~CG~v~ 73 (119)
T cd00382 44 DVLASLEYAVEVLGVKHIIVCGHTDCGAVK 73 (119)
T ss_pred cHHHHHHHHHHhhCCCEEEEEccCCCcHHH
Confidence 344555554443 47899999997655443
No 486
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=34.59 E-value=41 Score=17.50 Aligned_cols=26 Identities=27% Similarity=0.380 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhcCCCcEEEEEEchHH
Q 038643 7 DISASVDWLKANGSKKVGMVGYCMGS 32 (52)
Q Consensus 7 d~~~~~~~l~~~~~~~i~l~G~S~GG 32 (52)
|.+..++++++...+.+.+..-|-||
T Consensus 1 D~~~~~~~lk~~~v~si~i~a~~h~g 26 (132)
T PF14871_consen 1 DPEQFVDTLKEAHVNSITIFAKCHGG 26 (132)
T ss_pred CHHHHHHHHHHhCCCEEEEEcccccE
Confidence 56778888888777778777666666
No 487
>COG3675 Predicted lipase [Lipid metabolism]
Probab=34.55 E-value=32 Score=20.89 Aligned_cols=29 Identities=17% Similarity=0.257 Sum_probs=19.4
Q ss_pred HHHHHhc-CC-CcEEEEEEchHHHHHHHHHh
Q 038643 12 VDWLKAN-GS-KKVGMVGYCMGSALTIACSA 40 (52)
Q Consensus 12 ~~~l~~~-~~-~~i~l~G~S~GG~~a~~~a~ 40 (52)
.+++.+. +. -+++++|||-|+.+....+.
T Consensus 164 ~~~lleeiP~~Yrig~tghS~g~aii~vrGt 194 (332)
T COG3675 164 EQTLLEEIPQGYRIGITGHSSGGAIICVRGT 194 (332)
T ss_pred HHHHHHhcccceEEEEEeecCCccEEEEecc
Confidence 3444443 43 57899999999988655443
No 488
>PRK09533 bifunctional transaldolase/phosoglucose isomerase; Validated
Probab=34.51 E-value=72 Score=22.26 Aligned_cols=24 Identities=21% Similarity=0.300 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEE
Q 038643 4 VVADISASVDWLKANGSKKVGMVG 27 (52)
Q Consensus 4 ~~~d~~~~~~~l~~~~~~~i~l~G 27 (52)
..+++.++.+.++..+.+.|+++|
T Consensus 439 ~l~~i~~fa~~Ir~~~~d~VVviG 462 (948)
T PRK09533 439 HLAEYEAFAEEVRAEGFTDAVVLG 462 (948)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEc
Confidence 345666677767655567888887
No 489
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=34.44 E-value=85 Score=17.30 Aligned_cols=30 Identities=13% Similarity=0.033 Sum_probs=20.7
Q ss_pred HHHHHhcCCCcEEEEEEch----HHHHHHHHHhhc
Q 038643 12 VDWLKANGSKKVGMVGYCM----GSALTIACSASL 42 (52)
Q Consensus 12 ~~~l~~~~~~~i~l~G~S~----GG~~a~~~a~~~ 42 (52)
.+.+++.+ ..+.++|+|. |..++-.+|++.
T Consensus 101 ~~~i~~~~-p~lVL~~~t~~~~~grdlaprlAarL 134 (202)
T cd01714 101 AAAIKKIG-VDLILTGKQSIDGDTGQVGPLLAELL 134 (202)
T ss_pred HHHHHHhC-CCEEEEcCCcccCCcCcHHHHHHHHh
Confidence 34444444 5788999888 778888887663
No 490
>COG0328 RnhA Ribonuclease HI [DNA replication, recombination, and repair]
Probab=34.31 E-value=81 Score=17.07 Aligned_cols=29 Identities=14% Similarity=0.113 Sum_probs=21.0
Q ss_pred hhHHHHHHHHHHHHHhcCCCcEEEEEEch
Q 038643 2 VGVVADISASVDWLKANGSKKVGMVGYCM 30 (52)
Q Consensus 2 ~~~~~d~~~~~~~l~~~~~~~i~l~G~S~ 30 (52)
+.++.-+-.+++++++.++..|.+.+.|-
T Consensus 45 raEl~A~i~AL~~l~~~~~~~v~l~tDS~ 73 (154)
T COG0328 45 RAELRALIEALEALKELGACEVTLYTDSK 73 (154)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEEEecHH
Confidence 44555666777888776678888988885
No 491
>PRK13936 phosphoheptose isomerase; Provisional
Probab=34.15 E-value=84 Score=17.18 Aligned_cols=23 Identities=26% Similarity=0.086 Sum_probs=18.2
Q ss_pred CCcEEEEEEchHHHHHHHHHhhc
Q 038643 20 SKKVGMVGYCMGSALTIACSASL 42 (52)
Q Consensus 20 ~~~i~l~G~S~GG~~a~~~a~~~ 42 (52)
.++|.++|..-.+.+|..++.+.
T Consensus 43 a~~I~i~G~G~S~~~A~~~~~~l 65 (197)
T PRK13936 43 EGKILACGNGGSAADAQHFSAEL 65 (197)
T ss_pred CCEEEEEeCcHhHHHHHHHHHHc
Confidence 58999999887778888877543
No 492
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=34.12 E-value=54 Score=17.18 Aligned_cols=28 Identities=21% Similarity=0.228 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEEEchHH
Q 038643 4 VVADISASVDWLKANGSKKVGMVGYCMGS 32 (52)
Q Consensus 4 ~~~d~~~~~~~l~~~~~~~i~l~G~S~GG 32 (52)
.-+|++.+++++++.+ +...++=||-.|
T Consensus 107 ~~~~iD~fi~~v~~~p-~~~~l~fhC~~G 134 (149)
T PF14566_consen 107 DPEDIDAFINFVKSLP-KDTWLHFHCQAG 134 (149)
T ss_dssp -HHHHHHHHHHHHTS--TT-EEEEE-SSS
T ss_pred CHHHHHHHHHHHHhCC-CCCeEEEECCCC
Confidence 3578999999999884 445555566654
No 493
>cd07023 S49_Sppa_N_C Signal peptide peptidase A (SppA), a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV): SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. This subfamily contains members with either a single domain (sometimes referred to as 36K type), such as sohB peptidase, protein C and archaeal signal peptide peptidase, or an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Site-directed mutagenesis and sequence analysis have shown these SppAs to be serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys dyad
Probab=34.12 E-value=84 Score=17.17 Aligned_cols=30 Identities=10% Similarity=0.088 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHhcC-CCcEEEEEEchHHHH
Q 038643 5 VADISASVDWLKANG-SKKVGMVGYCMGSAL 34 (52)
Q Consensus 5 ~~d~~~~~~~l~~~~-~~~i~l~G~S~GG~~ 34 (52)
..++...++.+...+ .+-|.+.+.|-||.+
T Consensus 19 ~~~l~~~l~~a~~d~~i~~ivl~~~s~Gg~~ 49 (208)
T cd07023 19 ADSLIEQLRKAREDDSVKAVVLRINSPGGSV 49 (208)
T ss_pred HHHHHHHHHHHHhCCCCcEEEEEEECCCCCH
Confidence 344444454444332 334445555555533
No 494
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=34.09 E-value=75 Score=16.57 Aligned_cols=20 Identities=15% Similarity=-0.036 Sum_probs=15.1
Q ss_pred cEEEEEEchHHHHHHHHHhh
Q 038643 22 KVGMVGYCMGSALTIACSAS 41 (52)
Q Consensus 22 ~i~l~G~S~GG~~a~~~a~~ 41 (52)
++.++|-+.+|..+...+..
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~ 20 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELAR 20 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHH
T ss_pred CEEEEecHHHHHHHHHHHhc
Confidence 47788888888877776653
No 495
>cd03379 beta_CA_cladeD Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=33.77 E-value=75 Score=16.51 Aligned_cols=24 Identities=13% Similarity=-0.009 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhc-CCCcEEEEEEch
Q 038643 7 DISASVDWLKAN-GSKKVGMVGYCM 30 (52)
Q Consensus 7 d~~~~~~~l~~~-~~~~i~l~G~S~ 30 (52)
|+...+.|.... +.+.|.++||+-
T Consensus 41 ~~~~sl~~av~~l~~~~IiV~gHt~ 65 (142)
T cd03379 41 DAIRSLVVSVYLLGTREIIVIHHTD 65 (142)
T ss_pred hHHHHHHHHHHHhCCCEEEEEeecC
Confidence 333444443333 578999999974
No 496
>cd03378 beta_CA_cladeC Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=33.62 E-value=72 Score=17.11 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=17.0
Q ss_pred HHHHHHHHHhc-CCCcEEEEEEchHHHH
Q 038643 8 ISASVDWLKAN-GSKKVGMVGYCMGSAL 34 (52)
Q Consensus 8 ~~~~~~~l~~~-~~~~i~l~G~S~GG~~ 34 (52)
....+.|.-.. +.+.|.++||+==|.+
T Consensus 78 ~~~sl~yav~~l~v~~IvV~GHt~CG~~ 105 (154)
T cd03378 78 VLGSLEYAVEVLGVPLVVVLGHESCGAV 105 (154)
T ss_pred HHHHHHHHHHHhCCCEEEEEcCCCccHH
Confidence 34445553333 4688999999984443
No 497
>TIGR01440 conserved hypothetical protein TIGR01440. Members of this family are uncharacterized proteins of about 180 amino acids from the Bacillus/Clostridium group of Gram-positive bacteria, found in no more than one copy per genome.
Probab=33.53 E-value=77 Score=17.60 Aligned_cols=24 Identities=13% Similarity=0.237 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhc---CCCcEEEEEEch
Q 038643 7 DISASVDWLKAN---GSKKVGMVGYCM 30 (52)
Q Consensus 7 d~~~~~~~l~~~---~~~~i~l~G~S~ 30 (52)
++..+++.+.+. ...++.++|-|-
T Consensus 2 ~~~~~~~El~~~a~l~~g~i~VvGcST 28 (172)
T TIGR01440 2 QLTTVLEELKDASNLKKGDLFVIGCST 28 (172)
T ss_pred hHHHHHHHHHHhhCCCCCCEEEEecch
Confidence 344455444443 267899999886
No 498
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=33.52 E-value=98 Score=17.75 Aligned_cols=46 Identities=13% Similarity=0.053 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhcCCCcEEEEEEchHHHH-HHHHHhhcCCceeEeeeC
Q 038643 7 DISASVDWLKANGSKKVGMVGYCMGSAL-TIACSASLMERKHTFRMN 52 (52)
Q Consensus 7 d~~~~~~~l~~~~~~~i~l~G~S~GG~~-a~~~a~~~p~~~~~~~~~ 52 (52)
|.+..++-.++.+..++..+|.+....- +..++.++|....++-+|
T Consensus 20 ~~~~~l~~a~~~gv~~~~~~~~~~~~~~~~~~l~~~~~~v~~~~GiH 66 (258)
T PRK11449 20 DEEASLQRAAQAGVGKIIVPATEAENFARVLALAERYQPLYAALGLH 66 (258)
T ss_pred CHHHHHHHHHHCCCCEEEEeeCCHHHHHHHHHHHHhCCCEEEEEeeC
Confidence 5666776666656678889999887765 556666677666655543
No 499
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=33.41 E-value=30 Score=19.77 Aligned_cols=19 Identities=26% Similarity=0.565 Sum_probs=14.7
Q ss_pred EEEEchHHHHHHHHHhhcC
Q 038643 25 MVGYCMGSALTIACSASLM 43 (52)
Q Consensus 25 l~G~S~GG~~a~~~a~~~p 43 (52)
+.|||+|..-.+.-+...|
T Consensus 11 mCgWCyGa~Pll~~l~~~~ 29 (212)
T COG3531 11 MCGWCYGAAPLLEALSAQP 29 (212)
T ss_pred chhhhhCccHHHHHHHhcC
Confidence 6799999987777776655
No 500
>PF09989 DUF2229: CoA enzyme activase uncharacterised domain (DUF2229); InterPro: IPR018709 Proteins containing this domain include various bacterial hypothetical proteins, as well as CoA enzyme activases. The exact function of this domain has not, as yet, been defined.
Probab=33.18 E-value=95 Score=17.51 Aligned_cols=29 Identities=17% Similarity=0.126 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHhcCCCcEEEEEEch
Q 038643 2 VGVVADISASVDWLKANGSKKVGMVGYCM 30 (52)
Q Consensus 2 ~~~~~d~~~~~~~l~~~~~~~i~l~G~S~ 30 (52)
+...+.-...++.++..+...|.++||+.
T Consensus 165 ~~l~~~g~~~l~~~~~~~~~~Ivl~GrpY 193 (221)
T PF09989_consen 165 RELRKGGEEILAELEANGKPAIVLLGRPY 193 (221)
T ss_pred HHHHHhhHHHHHHHHhcCCceEEEEcCCC
Done!