BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038648
(332 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4I8V|A Chain A, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|B Chain B, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|C Chain C, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
pdb|4I8V|D Chain D, Human Cytochrome P450 1a1 In Complex With
Alpha-naphthoflavone
Length = 491
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 70/278 (25%), Positives = 124/278 (44%), Gaps = 35/278 (12%)
Query: 60 RKLNLPPGPKPWPIIGNLHLIGSLPHRSLHALSEKYGPIMQLKFGSFPVVVGSSAEMAKV 119
+ L PPGP WP+IG++ +G PH +L +S++YG ++Q++ GS PVVV S + +
Sbjct: 8 KGLKNPPGPWGWPLIGHMLTLGKNPHLALSRMSQQYGDVLQIRIGSTPVVVLSGLDTIRQ 67
Query: 120 ILKTQDALFSGRPKTAAGKYTTFNYSDITWSP-YGPYWRQARKIC--SMELFSVKRLES- 175
L Q F GRP + N +++SP GP W R++ ++ FS+ +
Sbjct: 68 ALVRQGDDFKGRPDLYTFTLIS-NGQSMSFSPDSGPVWAARRRLAQNGLKSFSIASDPAS 126
Query: 176 -----FEYIRVQELNLFLNRLYESFGKPTILKDHLSDLSLAIIS------RMVLGKKYTD 224
E +E + ++ L E P H + ++S + G++Y
Sbjct: 127 STSCYLEEHVSKEAEVLISTLQELMAGP----GHFNPYRYVVVSVTNVICAICFGRRYDH 182
Query: 225 KQLENEVVTPQEFTAMVDELFMLNGVLDVG---DSIPWLGFLDLQGNIKKMKALAKRFDK 281
QE ++V+ V+ G D IP L +L ++ K L ++F
Sbjct: 183 NH--------QELLSLVNLNNNFGEVVGSGNPADFIPILRYLP-NPSLNAFKDLNEKFYS 233
Query: 282 FLEHVLDEHDARRKGVENYVAKDMVDVLLQLADDPTLE 319
F++ ++ EH K E +D+ D L++ + L+
Sbjct: 234 FMQKMVKEH---YKTFEKGHIRDITDSLIEHCQEKQLD 268
>pdb|3PM0|A Chain A, Structural Characterization Of The Complex Between Alpha-
Naphthoflavone And Human Cytochrome P450 1b1 (Cyp1b1)
Length = 507
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 64/266 (24%), Positives = 116/266 (43%), Gaps = 31/266 (11%)
Query: 65 PPGPKPWPIIGNLHLIGSLPHRSLHALSEKYGPIMQLKFGSFPVVVGSSAEMAKVILKTQ 124
PPGP WP+IGN +G H S L+ +YG + Q++ GS P+VV + L Q
Sbjct: 11 PPGPFAWPLIGNAAAVGQAAHLSFARLARRYGDVFQIRLGSCPIVVLNGERAIHQALVQQ 70
Query: 125 DALFSGRPKTAAGKYTTFNYSDITWSPYGPYWRQARKICS--MELFSVKRLESFEYIR-- 180
+ F+ RP A+ + + S + + Y +W+ R+ M F ++ S + +
Sbjct: 71 GSAFADRPSFASFRVVSGGRS-MAFGHYSEHWKVQRRAAHSMMRNFFTRQPRSRQVLEGH 129
Query: 181 -VQELNLFLNRLYESFGKPTILKDH-LSDLSLA-IISRMVLGKKYT--DKQLENEVVTPQ 235
+ E + L L L+ +++A ++S + G +Y+ D + + +
Sbjct: 130 VLSEARELVALLVRGSADGAFLDPRPLTVVAVANVMSAVCFGCRYSHDDPEFRELLSHNE 189
Query: 236 EFTAMVDELFMLNGVLDVGDSIPWLGFL--DLQGNIKKMKALAKRF-----DKFLEHVLD 288
EF V G + D +PWL + ++ ++ + L + F DKFL H
Sbjct: 190 EFGRTV-------GAGSLVDVMPWLQYFPNPVRTVFREFEQLNRNFSNFILDKFLRHC-- 240
Query: 289 EHDARRKGVENYVAKDMVDVLLQLAD 314
++ R G +DM+D + A+
Sbjct: 241 --ESLRPGA---APRDMMDAFILSAE 261
>pdb|2HI4|A Chain A, Crystal Structure Of Human Microsomal P450 1a2 In Complex
With Alpha-Naphthoflavone
Length = 495
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 105/243 (43%), Gaps = 20/243 (8%)
Query: 60 RKLNLPPGPKPWPIIGNLHLIGSLPHRSLHALSEKYGPIMQLKFGSFPVVVGSSAEMAKV 119
+ L PP P WP++G++ +G PH +L +S++YG ++Q++ GS PV+V S + +
Sbjct: 13 KGLKSPPEPWGWPLLGHVLTLGKNPHLALSRMSQRYGDVLQIRIGSTPVLVLSRLDTIRQ 72
Query: 120 ILKTQDALFSGRPKTAAGKYTTFNYSDITWSPYGPYWRQARKIC--SMELFSVKRLES-- 175
L Q F GRP T S + GP W R++ ++ FS+ +
Sbjct: 73 ALVRQGDDFKGRPDLYTSTLITDGQSLTFSTDSGPVWAARRRLAQNALNTFSIASDPASS 132
Query: 176 ----FEYIRVQELNLFLNRLYESFGKPTILKDHLS-DLSLA-IISRMVLGKKYTDKQLEN 229
E +E ++RL E P + +S+A +I M G+ + +
Sbjct: 133 SSCYLEEHVSKEAKALISRLQELMAGPGHFDPYNQVVVSVANVIGAMCFGQHFPE----- 187
Query: 230 EVVTPQEFTAMVDELFMLNGVLDVGDSIPWLGFLDLQGN--IKKMKALAKRFDKFLEHVL 287
+ E ++V G+ + + L N +++ KA +RF FL+ +
Sbjct: 188 ---SSDEMLSLVKNTHEFVETASSGNPLDFFPILRYLPNPALQRFKAFNQRFLWFLQKTV 244
Query: 288 DEH 290
EH
Sbjct: 245 QEH 247
>pdb|3RUK|A Chain A, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|B Chain B, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|C Chain C, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3RUK|D Chain D, Human Cytochrome P450 Cyp17a1 In Complex With Abiraterone
pdb|3SWZ|A Chain A, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|B Chain B, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|C Chain C, Human Cytochrome P450 17a1 In Complex With Tok-001
pdb|3SWZ|D Chain D, Human Cytochrome P450 17a1 In Complex With Tok-001
Length = 494
Score = 65.5 bits (158), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 61/253 (24%), Positives = 110/253 (43%), Gaps = 34/253 (13%)
Query: 76 NLHLIGSLP--------HRSLHALSEKYGPIMQLKFGSFPVVVGSSAEMAKVILKTQDAL 127
+L L+GSLP H + L +KYGPI ++ G+ V+ ++AK +L +
Sbjct: 15 SLPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMGTKTTVIVGHHQLAKEVLIKKGKD 74
Query: 128 FSGRPKTAAGKYTTFNYSDITWSPYGPYWRQARKICSMELFSVKR--LESFEYIRVQELN 185
FSGRP+ A + N I ++ G +W+ R++ +M F++ + + E I QE++
Sbjct: 75 FSGRPQMATLDIASNNRKGIAFADSGAHWQLHRRL-AMATFALFKDGDQKLEKIICQEIS 133
Query: 186 LFLNRLYESFGKPTILKDHLSDLSLAIISRMVLGKKYTDKQLENEVVTPQEFTAMVDELF 245
+ L G+ + + +IS + Y + E V+ Q + + +
Sbjct: 134 TLCDMLATHNGQSIDISFPVFVAVTNVISLICFNTSYKNGDPELNVI--QNYNEGIIDNL 191
Query: 246 MLNGVLDVGDSIPWLGFLDLQGNIKKMKALAKRFDKFLEHVLDEHDARRKGVENYVAK-- 303
+ ++D+ +PWL K +K HV +D K +ENY K
Sbjct: 192 SKDSLVDL---VPWLKIFP-----------NKTLEKLKSHVKIRNDLLNKILENYKEKFR 237
Query: 304 -----DMVDVLLQ 311
+M+D L+Q
Sbjct: 238 SDSITNMLDTLMQ 250
>pdb|3QZ1|A Chain A, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
pdb|3QZ1|B Chain B, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
pdb|3QZ1|C Chain C, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
pdb|3QZ1|D Chain D, Crystal Structure Of Bovine Steroid Of 21-Hydroxylase
(P450c21)
Length = 496
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/259 (26%), Positives = 117/259 (45%), Gaps = 30/259 (11%)
Query: 60 RKLNLPPGPKPWPIIGNLHLIGSLPHRSLH--ALSEKYGPIMQLKFGSFPVVVGSSAEMA 117
R L+LPP + G LHL+ P+ +H +L++K GP+ +L+ G VVV +S
Sbjct: 26 RNLHLPPL-----VPGFLHLLQ--PNLPIHLLSLTQKLGPVYRLRLGLQEVVVLNSKRTI 78
Query: 118 KVILKTQDALFSGRPKTAAGKYTTFNYSDITWSPYGPYWRQARKICSMELFSVKRLESFE 177
+ + + F+GRP+ + K + DI+ Y W+ +K+ L R S E
Sbjct: 79 EEAMIRKWVDFAGRPQIPSYKLVSQRCQDISLGDYSLLWKAHKKLTRSALLLGTR-SSME 137
Query: 178 YIRVQELNLFLNRLYESFGKPTILKDHLSDLSLAIISRMVLGKKYTDKQLENEVVTPQEF 237
Q F R+ G P ++ S L+ +II + G K E+ +V F
Sbjct: 138 PWVDQLTQEFCERMRVQAGAPVTIQKEFSLLTCSIICYLTFGNK------EDTLV--HAF 189
Query: 238 TAMVDELFML--NGVLDVGDSIPWLGFLDLQGNIKKMKALAKRFDKFLEHVLDEHDARRK 295
V +L + + + D +P+L F G + +A+ R +H++++ R K
Sbjct: 190 HDCVQDLMKTWDHWSIQILDMVPFLRFFPNPGLWRLKQAIENR-----DHMVEKQLRRHK 244
Query: 296 GVENYVA---KDMVDVLLQ 311
E+ VA +DM D +LQ
Sbjct: 245 --ESMVAGQWRDMTDYMLQ 261
>pdb|2P85|A Chain A, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|B Chain B, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|C Chain C, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|D Chain D, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|E Chain E, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|2P85|F Chain F, Structure Of Human Lung Cytochrome P450 2a13 With Indole
Bound In Two Alternate Conformations
pdb|3T3S|A Chain A, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|B Chain B, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|C Chain C, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|D Chain D, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|E Chain E, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|F Chain F, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|G Chain G, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|3T3S|H Chain H, Human Cytochrome P450 2a13 In Complex With Pilocarpine
pdb|4EJG|A Chain A, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|B Chain B, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|C Chain C, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|D Chain D, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|E Chain E, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|F Chain F, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|G Chain G, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJG|H Chain H, Human Cytochrome P450 2a13 In Complex With Nicotine
pdb|4EJH|A Chain A, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|B Chain B, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|C Chain C, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|D Chain D, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|E Chain E, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|F Chain F, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|G Chain G, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJH|H Chain H, Human Cytochrome P450 2a13 In Complex With
4-(Methylnitrosamino)-1-(3- Pyridyl)-1-Butanone (Nnk)
pdb|4EJI|A Chain A, Human Cytochrome P450 2a13 In Complex With Two Molecules
Of 4- (Methylnitrosamino)-1-(3-Puridyl)-1-Butanone
Length = 476
Score = 61.6 bits (148), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 59/180 (32%), Positives = 78/180 (43%), Gaps = 24/180 (13%)
Query: 61 KLNLPPGPKPWPIIGN-LHLIGSLPHRSLHALSEKYGPIMQLKFGSFPVVVGSSAEMAKV 119
K LPPGP P P IGN L L + SL +SE+YGP+ + G VVV + K
Sbjct: 8 KGKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVKE 67
Query: 120 ILKTQDALFSGRPKTAAGKYTTFNYSDITWSPYGPYWRQARKICSMELFSVKRLESFEY- 178
L Q FSGR G+ TF D + YG + + + FS+ L F
Sbjct: 68 ALVDQAEEFSGR-----GEQATF---DWLFKGYGVAFSNGERAKQLRRFSIATLRGFGVG 119
Query: 179 -----IRVQELNLFL-NRLYESFGK---PTILKDHLSDLSLAIISRMVLGKK--YTDKQL 227
R+QE FL + L + G PT LS +IS +V G + Y DK+
Sbjct: 120 KRGIEERIQEEAGFLIDALRGTHGANIDPTFF---LSRTVSNVISSIVFGDRFDYEDKEF 176
>pdb|3EBS|A Chain A, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|B Chain B, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|C Chain C, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3EBS|D Chain D, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
With Phenacetin
pdb|3T3Q|A Chain A, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|B Chain B, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|C Chain C, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
pdb|3T3Q|D Chain D, Human Cytochrome P450 2a6 I208sI300FG301AS369G IN COMPLEX
WITH Pilocarpine
Length = 476
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 74/177 (41%), Gaps = 18/177 (10%)
Query: 61 KLNLPPGPKPWPIIGN-LHLIGSLPHRSLHALSEKYGPIMQLKFGSFPVVVGSSAEMAKV 119
K LPPGP P P IGN L L + SL +SE+YGP+ + G VVV + +
Sbjct: 8 KGKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVRE 67
Query: 120 ILKTQDALFSGRPKTAAGKYTTFNYSDITWSPYGPYWRQARKICSMELFSVKRLESFEY- 178
L Q FSGR G+ TF D + YG + + + FS+ L F
Sbjct: 68 ALVDQAEEFSGR-----GEQATF---DWVFKGYGVVFSNGERAKQLRRFSIATLRDFGVG 119
Query: 179 -----IRVQELNLFLNRLYESFGKPTILKD-HLSDLSLAIISRMVLGKK--YTDKQL 227
R+QE FL G I LS +IS +V G + Y DK+
Sbjct: 120 KRGIEERIQEEAGFLIDALRGTGGANIDPTFFLSRTVSNVISSIVFGDRFDYKDKEF 176
>pdb|1Z10|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z10|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With
Coumarin Bound
pdb|1Z11|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|1Z11|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With
Methoxsalen Bound
pdb|2FDU|A Chain A, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|B Chain B, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|C Chain C, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDU|D Chain D, Microsomal P450 2a6 With The Inhibitor N,N-Dimethyl(5-
(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|A Chain A, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|B Chain B, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|C Chain C, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDV|D Chain D, Microsomal P450 2a6 With The Inhibitor
N-Methyl(5-(Pyridin- 3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDW|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 With The
Inhibitor (5-(Pyridin-3-Yl)furan-2-Yl)methanamine Bound
pdb|2FDY|A Chain A, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|B Chain B, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|C Chain C, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|2FDY|D Chain D, Microsomal P450 2a6 With The Inhibitor Adrithiol Bound
pdb|3T3R|A Chain A, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|B Chain B, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|C Chain C, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|3T3R|D Chain D, Human Cytochrome P450 2a6 In Complex With Pilocarpine
pdb|4EJJ|A Chain A, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|B Chain B, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|C Chain C, Human Cytochrome P450 2a6 In Complex With Nicotine
pdb|4EJJ|D Chain D, Human Cytochrome P450 2a6 In Complex With Nicotine
Length = 476
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 74/177 (41%), Gaps = 18/177 (10%)
Query: 61 KLNLPPGPKPWPIIGN-LHLIGSLPHRSLHALSEKYGPIMQLKFGSFPVVVGSSAEMAKV 119
K LPPGP P P IGN L L + SL +SE+YGP+ + G VVV + +
Sbjct: 8 KGKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVRE 67
Query: 120 ILKTQDALFSGRPKTAAGKYTTFNYSDITWSPYGPYWRQARKICSMELFSVKRLESFEY- 178
L Q FSGR G+ TF D + YG + + + FS+ L F
Sbjct: 68 ALVDQAEEFSGR-----GEQATF---DWVFKGYGVVFSNGERAKQLRRFSIATLRDFGVG 119
Query: 179 -----IRVQELNLFLNRLYESFGKPTILKD-HLSDLSLAIISRMVLGKK--YTDKQL 227
R+QE FL G I LS +IS +V G + Y DK+
Sbjct: 120 KRGIEERIQEEAGFLIDALRGTGGANIDPTFFLSRTVSNVISSIVFGDRFDYKDKEF 176
>pdb|2PG6|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
pdb|2PG6|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 L240cN297Q
Length = 476
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 75/177 (42%), Gaps = 18/177 (10%)
Query: 61 KLNLPPGPKPWPIIGN-LHLIGSLPHRSLHALSEKYGPIMQLKFGSFPVVVGSSAEMAKV 119
K LPPGP P P IGN L L + SL +SE+YGP+ + G VVV + +
Sbjct: 8 KGKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVRE 67
Query: 120 ILKTQDALFSGRPKTAAGKYTTFNYSDITWSPYGPYWRQARKICSMELFSVKRLESFEY- 178
L Q FSGR G+ TF++ + YG + + + FS+ L F
Sbjct: 68 ALVDQAEEFSGR-----GEQATFDW---VFKGYGVVFSNGERAKQLRRFSIATLRDFGVG 119
Query: 179 -----IRVQELNLFLNRLYESFGKPTILKD-HLSDLSLAIISRMVLGKK--YTDKQL 227
R+QE FL G I LS +IS +V G + Y DK+
Sbjct: 120 KRGIEERIQEEAGFLIDALRGTGGANIDPTFFLSRTVSNVISSIVFGDRFDYKDKEF 176
>pdb|2PG7|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
pdb|2PG7|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 N297qI300V
Length = 476
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 74/177 (41%), Gaps = 18/177 (10%)
Query: 61 KLNLPPGPKPWPIIGN-LHLIGSLPHRSLHALSEKYGPIMQLKFGSFPVVVGSSAEMAKV 119
K LPPGP P P IGN L L + SL +SE+YGP+ + G VVV + +
Sbjct: 8 KGKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVRE 67
Query: 120 ILKTQDALFSGRPKTAAGKYTTFNYSDITWSPYGPYWRQARKICSMELFSVKRLESFEY- 178
L Q FSGR G+ TF D + YG + + + FS+ L F
Sbjct: 68 ALVDQAEEFSGR-----GEQATF---DWVFKGYGVVFSNGERAKQLRRFSIATLRDFGVG 119
Query: 179 -----IRVQELNLFLNRLYESFGKPTILKD-HLSDLSLAIISRMVLGKK--YTDKQL 227
R+QE FL G I LS +IS +V G + Y DK+
Sbjct: 120 KRGIEERIQEEAGFLIDALRGTGGANIDPTFFLSRTVSNVISSIVFGDRFDYKDKEF 176
>pdb|2PG5|A Chain A, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|B Chain B, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|C Chain C, Crystal Structure Of Human Microsomal P450 2a6 N297q
pdb|2PG5|D Chain D, Crystal Structure Of Human Microsomal P450 2a6 N297q
Length = 476
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 75/177 (42%), Gaps = 18/177 (10%)
Query: 61 KLNLPPGPKPWPIIGN-LHLIGSLPHRSLHALSEKYGPIMQLKFGSFPVVVGSSAEMAKV 119
K LPPGP P P IGN L L + SL +SE+YGP+ + G VVV + +
Sbjct: 8 KGKLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHLGPRRVVVLCGHDAVRE 67
Query: 120 ILKTQDALFSGRPKTAAGKYTTFNYSDITWSPYGPYWRQARKICSMELFSVKRLESFEY- 178
L Q FSGR G+ TF++ + YG + + + FS+ L F
Sbjct: 68 ALVDQAEEFSGR-----GEQATFDW---VFKGYGVVFSNGERAKQLRRFSIATLRDFGVG 119
Query: 179 -----IRVQELNLFLNRLYESFGKPTILKD-HLSDLSLAIISRMVLGKK--YTDKQL 227
R+QE FL G I LS +IS +V G + Y DK+
Sbjct: 120 KRGIEERIQEEAGFLIDALRGTGGANIDPTFFLSRTVSNVISSIVFGDRFDYKDKEF 176
>pdb|4H1N|A Chain A, Crystal Structure Of P450 2b4 F297a Mutant In Complex With
Anti- Platelet Drug Clopidogrel
Length = 479
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 79/169 (46%), Gaps = 14/169 (8%)
Query: 61 KLNLPPGPKPWPIIGNLHLI---GSLPHRSLHALSEKYGPIMQLKFGSFPVVVGSSAEMA 117
K LPPGP P P++GNL + G L RS L EKYG + + GS PVVV +
Sbjct: 8 KGKLPPGPSPLPVLGNLLQMDRKGLL--RSFLRLREKYGDVFTVYLGSRPVVVLCGTDAI 65
Query: 118 KVILKTQDALFSGRPKTAAGKYTTFNYSDITWSPYGPYWRQARK--ICSMELFSVKRLES 175
+ L Q FSGR K A Y I + G WR R+ + +M F + +
Sbjct: 66 REALVDQAEAFSGRGKIAVVDPIFQGYGVIFAN--GERWRALRRFSLATMRDFGMGKRSV 123
Query: 176 FEYIRVQELNLFLNRLYESFGKPTILKDHL--SDLSLAIISRMVLGKKY 222
E I+ +E + L +S G +L + L ++ II +V GK++
Sbjct: 124 EERIQ-EEARCLVEELRKSKG--ALLDNTLLFHSITSNIICSIVFGKRF 169
>pdb|1SUO|A Chain A, Structure Of Mammalian Cytochrome P450 2b4 With Bound
4-(4- Chlorophenyl)imidazole
pdb|2BDM|A Chain A, Structure Of Cytochrome P450 2b4 With Bound Bifonazole
pdb|3G5N|A Chain A, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|B Chain B, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|C Chain C, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|D Chain D, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|A Chain A, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|B Chain B, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|C Chain C, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|D Chain D, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3KW4|A Chain A, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Ticlopidine
pdb|3ME6|A Chain A, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|B Chain B, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|C Chain C, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|D Chain D, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3MVR|A Chain A, Crystal Structure Of Cytochrome P450 2b4-H226y In A Closed
Conformation
pdb|3MVR|B Chain B, Crystal Structure Of Cytochrome P450 2b4-H226y In A Closed
Conformation
pdb|3R1A|A Chain A, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|B Chain B, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|C Chain C, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|D Chain D, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|E Chain E, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|F Chain F, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|G Chain G, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|H Chain H, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|A Chain A, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|B Chain B, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|C Chain C, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|D Chain D, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3TMZ|A Chain A, Crystal Structure Of P450 2b4(H226y) In Complex With
Amlodipine
pdb|3UAS|A Chain A, Cytochrome P450 2b4 Covalently Bound To The
Mechanism-based Inactivator 9-ethynylphenanthrene
Length = 476
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 79/169 (46%), Gaps = 14/169 (8%)
Query: 61 KLNLPPGPKPWPIIGNLHLI---GSLPHRSLHALSEKYGPIMQLKFGSFPVVVGSSAEMA 117
K LPPGP P P++GNL + G L RS L EKYG + + GS PVVV +
Sbjct: 8 KGKLPPGPSPLPVLGNLLQMDRKGLL--RSFLRLREKYGDVFTVYLGSRPVVVLCGTDAI 65
Query: 118 KVILKTQDALFSGRPKTAAGKYTTFNYSDITWSPYGPYWRQARK--ICSMELFSVKRLES 175
+ L Q FSGR K A Y I + G WR R+ + +M F + +
Sbjct: 66 REALVDQAEAFSGRGKIAVVDPIFQGYGVIFAN--GERWRALRRFSLATMRDFGMGKRSV 123
Query: 176 FEYIRVQELNLFLNRLYESFGKPTILKDHL--SDLSLAIISRMVLGKKY 222
E I+ +E + L +S G +L + L ++ II +V GK++
Sbjct: 124 EERIQ-EEARCLVEELRKSKG--ALLDNTLLFHSITSNIICSIVFGKRF 169
>pdb|3TK3|A Chain A, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|B Chain B, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|C Chain C, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|D Chain D, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
Length = 476
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 79/169 (46%), Gaps = 14/169 (8%)
Query: 61 KLNLPPGPKPWPIIGNLHLI---GSLPHRSLHALSEKYGPIMQLKFGSFPVVVGSSAEMA 117
K LPPGP P P++GNL + G L RS L EKYG + + GS PVVV +
Sbjct: 8 KGKLPPGPSPLPVLGNLLQMDRKGLL--RSFLRLREKYGDVFTVYLGSRPVVVLCGTDAI 65
Query: 118 KVILKTQDALFSGRPKTAAGKYTTFNYSDITWSPYGPYWRQARK--ICSMELFSVKRLES 175
+ L Q FSGR K A Y I + G WR R+ + +M F + +
Sbjct: 66 REALVDQAEAFSGRGKIAVVDPIFQGYGVIFAN--GERWRALRRFSLATMRDFGMGKRSV 123
Query: 176 FEYIRVQELNLFLNRLYESFGKPTILKDHL--SDLSLAIISRMVLGKKY 222
E I+ +E + L +S G +L + L ++ II +V GK++
Sbjct: 124 EERIQ-EEARCLVEELRKSKG--ALLDNTLLFHSITSNIICSIVFGKRF 169
>pdb|1PO5|A Chain A, Structure Of Mammalian Cytochrome P450 2b4
Length = 476
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 79/169 (46%), Gaps = 14/169 (8%)
Query: 61 KLNLPPGPKPWPIIGNLHLI---GSLPHRSLHALSEKYGPIMQLKFGSFPVVVGSSAEMA 117
K LPPGP P P++GNL + G L RS L EKYG + + GS PVVV +
Sbjct: 8 KGKLPPGPSPLPVLGNLLQMDRKGLL--RSFLRLREKYGDVFTVYLGSRPVVVLCGTDAI 65
Query: 118 KVILKTQDALFSGRPKTAAGKYTTFNYSDITWSPYGPYWRQARK--ICSMELFSVKRLES 175
+ L Q FSGR K A Y I + G WR R+ + +M F + +
Sbjct: 66 REALVDQAEAFSGRGKIAVVDPIFQGYGVIFAN--GERWRALRRFSLATMRDFGMGKRSV 123
Query: 176 FEYIRVQELNLFLNRLYESFGKPTILKDHL--SDLSLAIISRMVLGKKY 222
E I+ +E + L +S G +L + L ++ II +V GK++
Sbjct: 124 EERIQ-EEARCLVEELRKSKG--ALLDNTLLFHSITSNIICSIVFGKRF 169
>pdb|2Q6N|A Chain A, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|B Chain B, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|C Chain C, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|D Chain D, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|E Chain E, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|F Chain F, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|G Chain G, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
Length = 478
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 79/169 (46%), Gaps = 14/169 (8%)
Query: 61 KLNLPPGPKPWPIIGNLHLI---GSLPHRSLHALSEKYGPIMQLKFGSFPVVVGSSAEMA 117
K LPPGP P P++GNL + G L RS L EKYG + + GS PVVV +
Sbjct: 8 KGKLPPGPSPLPVLGNLLQMDRKGLL--RSFLRLREKYGDVFTVYLGSRPVVVLCGTDAI 65
Query: 118 KVILKTQDALFSGRPKTAAGKYTTFNYSDITWSPYGPYWRQARK--ICSMELFSVKRLES 175
+ L Q FSGR K A Y I + G WR R+ + +M F + +
Sbjct: 66 REALVDQAEAFSGRGKIAVVDPIFQGYGVIFAN--GERWRALRRFSLATMRDFGMGKRSV 123
Query: 176 FEYIRVQELNLFLNRLYESFGKPTILKDHL--SDLSLAIISRMVLGKKY 222
E I+ +E + L +S G +L + L ++ II +V GK++
Sbjct: 124 EERIQ-EEARCLVEELRKSKG--ALLDNTLLFHSITSNIICSIVFGKRF 169
>pdb|1R9O|A Chain A, Crystal Structure Of P4502c9 With Flurbiprofen Bound
Length = 477
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 74/170 (43%), Gaps = 6/170 (3%)
Query: 64 LPPGPKPWPIIGNLHLIGSLP-HRSLHALSEKYGPIMQLKFGSFPVVVGSSAEMAKVILK 122
LPPGP P P+IGN+ IG +SL LS+ YGP+ L FG P+VV E K L
Sbjct: 12 LPPGPTPLPVIGNILQIGIKDISKSLTNLSKVYGPVFTLYFGLKPIVVLHGYEAVKEALI 71
Query: 123 TQDALFSGRPKTAAGKYTTFNYSDITWSPYGPYWRQARKICSMELFSVKRLESFEYIRVQ 182
FSGR + + I +S G W++ R+ M L + + RVQ
Sbjct: 72 DLGEEFSGRGIFPLAERANRGFG-IVFS-NGKKWKEIRRFSLMTLRNFGMGKRSIEDRVQ 129
Query: 183 -ELNLFLNRLYESFGKPTILKDHLSDLSLAIISRMVLGKK--YTDKQLEN 229
E + L ++ P L +I ++ K+ Y D+Q N
Sbjct: 130 EEARCLVEELRKTKASPCDPTFILGCAPCNVICSIIFHKRFDYKDQQFLN 179
>pdb|1PQ2|A Chain A, Crystal Structure Of Human Drug Metabolizing Cytochrome
P450 2c8
pdb|1PQ2|B Chain B, Crystal Structure Of Human Drug Metabolizing Cytochrome
P450 2c8
pdb|2NNH|A Chain A, Cyp2c8dh Complexed With 2 Molecules Of 9-Cis Retinoic Acid
pdb|2NNH|B Chain B, Cyp2c8dh Complexed With 2 Molecules Of 9-Cis Retinoic Acid
pdb|2NNI|A Chain A, Cyp2c8dh Complexed With Montelukast
pdb|2NNJ|A Chain A, Cyp2c8dh Complexed With Felodipine
pdb|2VN0|A Chain A, Cyp2c8dh Complexed With Troglitazone
Length = 476
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 75/278 (26%), Positives = 113/278 (40%), Gaps = 33/278 (11%)
Query: 61 KLNLPPGPKPWPIIGNLHLIGSLP-HRSLHALSEKYGPIMQLKFGSFPVVVGSSAEMAKV 119
K LPPGP P PIIGN+ I +S S+ YGP+ + FG P+VV E K
Sbjct: 8 KGKLPPGPTPLPIIGNMLQIDVKDICKSFTNFSKVYGPVFTVYFGMNPIVVFHGYEAVKE 67
Query: 120 ILKTQDALFSGRPKTAAGKYTTFNYSDITWSPYGPYWRQARKICSMELFSVKRLESFEY- 178
L FSGR + + T I S G W++ R+ FS+ L +F
Sbjct: 68 ALIDNGEEFSGRGNSPISQRITKGLGII--SSNGKRWKEIRR------FSLTTLRNFGMG 119
Query: 179 -----IRVQ-ELNLFLNRLYESFGKPTILKDHLSDLSLAIISRMVLGKKYTDKQLENEVV 232
RVQ E + + L ++ P L +I +V K++ D + +N +
Sbjct: 120 KRSIEDRVQEEAHCLVEELRKTKASPCDPTFILGCAPCNVICSVVFQKRF-DYKDQNFLT 178
Query: 233 TPQEFTAMVDELFMLNGV-LDVGDSIPWL--GFLDLQGNIKKMKALAKRFDKFLEHVLDE 289
+ F + +LN + V ++ P L F + K AL + ++ + E
Sbjct: 179 LMKRFN---ENFRILNSPWIQVCNNFPLLIDCFPGTHNKVLKNVALTR---SYIREKVKE 232
Query: 290 HDARRKGVENYVAKDMVDVLL----QLADDPTLEVKIE 323
H A V N +D +D L Q D+ E IE
Sbjct: 233 HQASLD-VNN--PRDFIDCFLIKMEQEKDNQKSEFNIE 267
>pdb|1OG2|A Chain A, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG2|B Chain B, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG5|A Chain A, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG5|B Chain B, Structure Of Human Cytochrome P450 Cyp2c9
Length = 475
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 73/169 (43%), Gaps = 6/169 (3%)
Query: 65 PPGPKPWPIIGNLHLIGSLP-HRSLHALSEKYGPIMQLKFGSFPVVVGSSAEMAKVILKT 123
PPGP P P+IGN+ IG +SL LS+ YGP+ L FG P+VV E K L
Sbjct: 11 PPGPTPLPVIGNILQIGIKDISKSLTNLSKVYGPVFTLYFGLKPIVVLHGYEAVKEALID 70
Query: 124 QDALFSGRPKTAAGKYTTFNYSDITWSPYGPYWRQARKICSMELFSVKRLESFEYIRVQ- 182
FSGR + + I +S G W++ R+ M L + + RVQ
Sbjct: 71 LGEEFSGRGIFPLAERANRGFG-IVFS-NGKKWKEIRRFSLMTLRNFGMGKRSIEDRVQE 128
Query: 183 ELNLFLNRLYESFGKPTILKDHLSDLSLAIISRMVLGKK--YTDKQLEN 229
E + L ++ P L +I ++ K+ Y D+Q N
Sbjct: 129 EARCLVEELRKTKASPCDPTFILGCAPCNVICSIIFHKRFDYKDQQFLN 177
>pdb|3CZH|A Chain A, Crystal Structure Of Cyp2r1 In Complex With Vitamin D2
pdb|3CZH|B Chain B, Crystal Structure Of Cyp2r1 In Complex With Vitamin D2
Length = 481
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 106/253 (41%), Gaps = 21/253 (8%)
Query: 74 IGNLHLIGSLPHRSLHALSEKYGPIMQLKFGSFPVVVGSSAEMAKVILKTQDALFSGRPK 133
I +L LPH + S+ YG I L G VV + ++ K L Q +F+ RP
Sbjct: 26 IYSLAASSELPHVYMRKQSQVYGEIFSLDLGGISTVVLNGYDVVKECLVHQSEIFADRPC 85
Query: 134 TAAGKYTTFNYSDITWSPYGPYWRQARKIC--SMELFSVKRLESFEYIRVQELNLFLNRL 191
T + S YG W R++ S F + +SFE ++E F + +
Sbjct: 86 LPLFMKMT-KMGGLLNSRYGRGWVDHRRLAVNSFRYFGYGQ-KSFESKILEETKFFNDAI 143
Query: 192 YESFGKPTILKDHLSDLSLAIISRMVLGKKYTDKQLENEVVTPQEFTAMVDELFMLNGVL 251
G+P K +++ I + ++ G+++T + +F M+ ELF N L
Sbjct: 144 ETYKGRPFDFKQLITNAVSNITNLIIFGERFTYED--------TDFQHMI-ELFSENVEL 194
Query: 252 DVGDSI------PWLGFLDLQGNIKKMKALAKRFDKFLEHVLDEHDARRK-GVENYVAKD 304
S+ PW+G L + + + A +D FL ++++ RK + +
Sbjct: 195 AASASVFLYNAFPWIGILPFGKHQQLFRNAAVVYD-FLSRLIEKASVNRKPQLPQHFVDA 253
Query: 305 MVDVLLQLADDPT 317
+D + Q +DP+
Sbjct: 254 YLDEMDQGKNDPS 266
>pdb|3C6G|A Chain A, Crystal Structure Of Cyp2r1 In Complex With Vitamin D3
pdb|3C6G|B Chain B, Crystal Structure Of Cyp2r1 In Complex With Vitamin D3
pdb|3DL9|A Chain A, Crystal Structure Of Cyp2r1 In Complex With
1-Alpha-Hydroxy- Vitamin D2
pdb|3DL9|B Chain B, Crystal Structure Of Cyp2r1 In Complex With
1-Alpha-Hydroxy- Vitamin D2
Length = 479
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 106/253 (41%), Gaps = 21/253 (8%)
Query: 74 IGNLHLIGSLPHRSLHALSEKYGPIMQLKFGSFPVVVGSSAEMAKVILKTQDALFSGRPK 133
I +L LPH + S+ YG I L G VV + ++ K L Q +F+ RP
Sbjct: 26 IYSLAASSELPHVYMRKQSQVYGEIFSLDLGGISTVVLNGYDVVKECLVHQSEIFADRPC 85
Query: 134 TAAGKYTTFNYSDITWSPYGPYWRQARKIC--SMELFSVKRLESFEYIRVQELNLFLNRL 191
T + S YG W R++ S F + +SFE ++E F + +
Sbjct: 86 LPLFMKMT-KMGGLLNSRYGRGWVDHRRLAVNSFRYFGYGQ-KSFESKILEETKFFNDAI 143
Query: 192 YESFGKPTILKDHLSDLSLAIISRMVLGKKYTDKQLENEVVTPQEFTAMVDELFMLNGVL 251
G+P K +++ I + ++ G+++T + +F M+ ELF N L
Sbjct: 144 ETYKGRPFDFKQLITNAVSNITNLIIFGERFTYED--------TDFQHMI-ELFSENVEL 194
Query: 252 DVGDSI------PWLGFLDLQGNIKKMKALAKRFDKFLEHVLDEHDARRK-GVENYVAKD 304
S+ PW+G L + + + A +D FL ++++ RK + +
Sbjct: 195 AASASVFLYNAFPWIGILPFGKHQQLFRNAAVVYD-FLSRLIEKASVNRKPQLPQHFVDA 253
Query: 305 MVDVLLQLADDPT 317
+D + Q +DP+
Sbjct: 254 YLDEMDQGKNDPS 266
>pdb|4GQS|A Chain A, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|B Chain B, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|C Chain C, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|D Chain D, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
Length = 477
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 73/170 (42%), Gaps = 6/170 (3%)
Query: 64 LPPGPKPWPIIGNLHLIG-SLPHRSLHALSEKYGPIMQLKFGSFPVVVGSSAEMAKVILK 122
LPPGP P P+IGN+ I +SL LS+ YGP+ L FG +VV E+ K L
Sbjct: 12 LPPGPTPLPVIGNILQIDIKDVSKSLTNLSKIYGPVFTLYFGLERMVVLHGYEVVKEALI 71
Query: 123 TQDALFSGRPKTAAGKYTTFNYSDITWSPYGPYWRQARKICSMELFSVKRLESFEYIRVQ 182
FSGR + + I +S G W++ R+ M L + + RVQ
Sbjct: 72 DLGEEFSGRGHFPLAERANRGFG-IVFS-NGKRWKEIRRFSLMTLRNFGMGKRSIEDRVQ 129
Query: 183 -ELNLFLNRLYESFGKPTILKDHLSDLSLAIISRMVLGKK--YTDKQLEN 229
E + L ++ P L +I ++ K+ Y D+Q N
Sbjct: 130 EEARCLVEELRKTKASPCDPTFILGCAPCNVICSIIFQKRFDYKDQQFLN 179
>pdb|1DT6|A Chain A, Structure Of Mammalian Cytochrome P450 2c5
pdb|1N6B|A Chain A, Microsomal Cytochrome P450 2c5/3lvdh Complex With A
Dimethyl Derivative Of Sulfaphenazole
pdb|1NR6|A Chain A, Microsomal Cytochrome P450 2c53LVDH COMPLEX WITH
DICLOFENAC
Length = 473
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 67/280 (23%), Positives = 110/280 (39%), Gaps = 40/280 (14%)
Query: 61 KLNLPPGPKPWPIIGNLHLIGSLP-HRSLHALSEKYGPIMQLKFGSFPVVVGSSAEMAKV 119
K LPPGP P+PIIGN+ I + +SL SE YGP+ + G P VV E K
Sbjct: 8 KGKLPPGPTPFPIIGNILQIDAKDISKSLTKFSECYGPVFTVYLGMKPTVVLHGYEAVKE 67
Query: 120 ILKTQDALFSGR------PKTAAGKYTTFNYSDITWSPYGPYWRQARKICSMEL--FSVK 171
L F+GR K + G F+ + W++ R+ M L F +
Sbjct: 68 ALVDLGEEFAGRGSVPILEKVSKGLGIAFSNAKT--------WKEMRRFSLMTLRNFGMG 119
Query: 172 RLESFEYIRVQELNLFLNRLYESFGKPTILKDHLSDLSLAIISRMVLGKKYTDKQLENEV 231
+ S E +E + L ++ P L +I ++ ++ K
Sbjct: 120 K-RSIEDRIQEEARCLVEELRKTNASPCDPTFILGCAPCNVICSVIFHNRFDYKD----- 173
Query: 232 VTPQEFTAMVDELFMLNGVLDVGDSIPWL-------GFLDLQGNIKKMKALAKRFDKFLE 284
+EF +++ L +L PWL LD I K L K D
Sbjct: 174 ---EEFLKLMESLHENVELL----GTPWLQVYNNFPALLDYFPGIH--KTLLKNADYIKN 224
Query: 285 HVLDEHDARRKGVENYVAKDMVDV-LLQLADDPTLEVKIE 323
++++ +K ++ +D +D L+++ + LE +E
Sbjct: 225 FIMEKVKEHQKLLDVNNPRDFIDCFLIKMEQENNLEFTLE 264
>pdb|3E4E|A Chain A, Human Cytochrome P450 2e1 In Complex With The Inhibitor 4-
Methylpyrazole
pdb|3E4E|B Chain B, Human Cytochrome P450 2e1 In Complex With The Inhibitor 4-
Methylpyrazole
pdb|3E6I|A Chain A, Human Cytochrome P450 2e1 In Complex With The Inhibitor
Indazole
pdb|3E6I|B Chain B, Human Cytochrome P450 2e1 In Complex With The Inhibitor
Indazole
pdb|3GPH|A Chain A, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Decanoic Acid
pdb|3GPH|B Chain B, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Decanoic Acid
pdb|3KOH|A Chain A, Cytochrome P450 2e1 With Omega-Imidazolyl Octanoic Acid
pdb|3KOH|B Chain B, Cytochrome P450 2e1 With Omega-Imidazolyl Octanoic Acid
pdb|3LC4|A Chain A, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Dodecanoic Acid
pdb|3LC4|B Chain B, Human Cytochrome P450 2e1 In Complex With
Omega-Imidazolyl-Dodecanoic Acid
pdb|3T3Z|A Chain A, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|B Chain B, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|C Chain C, Human Cytochrome P450 2e1 In Complex With Pilocarpine
pdb|3T3Z|D Chain D, Human Cytochrome P450 2e1 In Complex With Pilocarpine
Length = 476
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 66/141 (46%), Gaps = 7/141 (4%)
Query: 61 KLNLPPGPKPWPIIGNLHL--IGSLPHRSLHALSEKYGPIMQLKFGSFPVVVGSSAEMAK 118
K LPPGP P PIIGNL + ++P +S L++++GP+ L GS +VV + K
Sbjct: 8 KGKLPPGPFPLPIIGNLFQLELKNIP-KSFTRLAQRFGPVFTLYVGSQRMVVMHGYKAVK 66
Query: 119 VILKTQDALFSGRPKTAAGKYTTFNYSDITWSPYGPYWRQARKICSMELFSVKRLESFEY 178
L FSGR A + I ++ GP W+ R+ L + +
Sbjct: 67 EALLDYKDEFSGRGDLPA--FHAHRDRGIIFN-NGPTWKDIRRFSLTTLRNYGMGKQGNE 123
Query: 179 IRVQ-ELNLFLNRLYESFGKP 198
R+Q E + L L ++ G+P
Sbjct: 124 SRIQREAHFLLEALRKTQGQP 144
>pdb|3K9V|A Chain A, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Chaps
pdb|3K9V|B Chain B, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Chaps
pdb|3K9Y|A Chain A, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Cymal-5
pdb|3K9Y|B Chain B, Crystal Structure Of Rat Mitochondrial P450 24a1 S57d In
Complex With Cymal-5
Length = 482
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Query: 66 PGPKPWPIIGNLHLI---GSLP--HRSLHALSEKYGPIMQLKFGSFPVVVGSSAEMAKVI 120
PGP WP++G+L I G L H +L +KYG I ++K GSF V S + + +
Sbjct: 27 PGPTNWPLLGSLLEIFWKGGLKKQHDTLAEYHKKYGQIFRMKLGSFDSVHLGSPSLLEAL 86
Query: 121 LKTQDA 126
+T+ A
Sbjct: 87 YRTESA 92
>pdb|3UA1|A Chain A, Crystal Structure Of The Cytochrome
P4503a4-Bromoergocryptine Complex
pdb|3TJS|A Chain A, Crystal Structure Of The Complex Between Human Cytochrome
P450 3a4 And Desthiazolylmethyloxycarbonyl Ritonavir
Length = 487
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 78/180 (43%), Gaps = 17/180 (9%)
Query: 47 LSYYKCPHQQHLRRKLNLPPGPKPWPIIGNL---HLIGSLPHRSLHALSEKYGPIMQLKF 103
++Y H L +KL +P GP P P +GN+ H + H +KYG +
Sbjct: 1 MAYLYGTHSHGLFKKLGIP-GPTPLPFLGNILSYHKGFCMFDMECH---KKYGKVWGFYD 56
Query: 104 GSFPVVVGSSAEMAKVIL-KTQDALFSG-RPKTAAGKYTTFNYSDITWSPYGPYWRQARK 161
G PV+ + +M K +L K ++F+ RP G F S I+ + W++ R
Sbjct: 57 GQQPVLAITDPDMIKTVLVKECYSVFTNRRPFGPVG----FMKSAISIA-EDEEWKRLRS 111
Query: 162 ICSMELFSVKRLESFEYIRVQELNLFLNRLYE--SFGKPTILKDHLSDLSLAIISRMVLG 219
+ S F+ +L+ I Q ++ + L GKP LKD S+ +I+ G
Sbjct: 112 LLS-PTFTSGKLKEMVPIIAQYGDVLVRNLRREAETGKPVTLKDVFGAYSMDVITSTSFG 170
>pdb|3IBD|A Chain A, Crystal Structure Of A Cytochrome P450 2b6 Genetic Variant
In Complex With The Inhibitor
4-(4-Chlorophenyl)imidazole
pdb|3QOA|A Chain A, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-Benzylpyridine.
pdb|3QU8|A Chain A, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|B Chain B, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|C Chain C, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|D Chain D, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|E Chain E, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|F Chain F, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3UA5|A Chain A, Crystal Structure Of P450 2b6 (Y226hK262R) IN COMPLEX WITH
TWO Molecules Of Amlodipine
pdb|3UA5|B Chain B, Crystal Structure Of P450 2b6 (Y226hK262R) IN COMPLEX WITH
TWO Molecules Of Amlodipine
Length = 476
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 97/234 (41%), Gaps = 26/234 (11%)
Query: 86 RSLHALSEKYGPIMQLKFGSFPVVVGSSAEMAKVILKTQDALFSGRPKTAAGKYTTFNYS 145
+S EKYG + + G PVV+ E + L + FSGR K A Y
Sbjct: 34 KSFLRFREKYGDVFTVHLGPRPVVMLCGVEAIREALVDKAEAFSGRGKIAMVDPFFRGYG 93
Query: 146 DITWSPYGPYWRQARK--ICSMELFSVKRLESFEYIRVQELNLFLNRLYESFGK---PTI 200
I + G W+ R+ + +M F + + E I+ +E + L +S G PT
Sbjct: 94 VIFAN--GNRWKVLRRFSVTTMRDFGMGKRSVEERIQ-EEAQCLIEELRKSKGALMDPTF 150
Query: 201 LKDHLSDLSLAIISRMVLGKKYTDKQLENEVVTPQEFTAMVDELFMLNGVLD--VGDSIP 258
L ++ II +V GK++ + QEF M++ + ++ G
Sbjct: 151 L---FQSITANIICSIVFGKRFHYQD--------QEFLKMLNLFYQTFSLISSVFGQLFE 199
Query: 259 WL-GFLD-LQGNIKKMKALAKRFDKFLEHVLDEHDARRKGVENYVAKDMVDVLL 310
GFL G +++ + + ++ H +++H R+ ++ +D++D L
Sbjct: 200 LFSGFLKHFPGAHRQVYKNLQEINAYIGHSVEKH---RETLDPSAPRDLIDTYL 250
>pdb|1W0E|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|1W0F|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|1W0G|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|2J0D|A Chain A, Crystal Structure Of Human P450 3a4 In Complex With
Erythromycin
pdb|2J0D|B Chain B, Crystal Structure Of Human P450 3a4 In Complex With
Erythromycin
pdb|2V0M|A Chain A, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|B Chain B, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|C Chain C, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|D Chain D, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|3NXU|A Chain A, Crystal Structure Of Human Cytochrome P4503a4 Bound To An
Inhibitor Ritonavir
pdb|3NXU|B Chain B, Crystal Structure Of Human Cytochrome P4503a4 Bound To An
Inhibitor Ritonavir
Length = 485
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 75/173 (43%), Gaps = 17/173 (9%)
Query: 54 HQQHLRRKLNLPPGPKPWPIIGNL---HLIGSLPHRSLHALSEKYGPIMQLKFGSFPVVV 110
H L +KL +P GP P P +GN+ H + H +KYG + G PV+
Sbjct: 6 HSHGLFKKLGIP-GPTPLPFLGNILSYHKGFCMFDMECH---KKYGKVWGFYDGQQPVLA 61
Query: 111 GSSAEMAKVIL-KTQDALFSG-RPKTAAGKYTTFNYSDITWSPYGPYWRQARKICSMELF 168
+ +M K +L K ++F+ RP G F S I+ + W++ R + S F
Sbjct: 62 ITDPDMIKTVLVKECYSVFTNRRPFGPVG----FMKSAISIA-EDEEWKRLRSLLS-PTF 115
Query: 169 SVKRLESFEYIRVQELNLFLNRLYE--SFGKPTILKDHLSDLSLAIISRMVLG 219
+ +L+ I Q ++ + L GKP LKD S+ +I+ G
Sbjct: 116 TSGKLKEMVPIIAQYGDVLVRNLRREAETGKPVTLKDVFGAYSMDVITSTSFG 168
>pdb|1TQN|A Chain A, Crystal Structure Of Human Microsomal P450 3a4
Length = 486
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 75/173 (43%), Gaps = 17/173 (9%)
Query: 54 HQQHLRRKLNLPPGPKPWPIIGNL---HLIGSLPHRSLHALSEKYGPIMQLKFGSFPVVV 110
H L +KL +P GP P P +GN+ H + H +KYG + G PV+
Sbjct: 7 HSHGLFKKLGIP-GPTPLPFLGNILSYHKGFCMFDMECH---KKYGKVWGFYDGQQPVLA 62
Query: 111 GSSAEMAKVIL-KTQDALFSG-RPKTAAGKYTTFNYSDITWSPYGPYWRQARKICSMELF 168
+ +M K +L K ++F+ RP G F S I+ + W++ R + S F
Sbjct: 63 ITDPDMIKTVLVKECYSVFTNRRPFGPVG----FMKSAISIA-EDEEWKRLRSLLS-PTF 116
Query: 169 SVKRLESFEYIRVQELNLFLNRLYE--SFGKPTILKDHLSDLSLAIISRMVLG 219
+ +L+ I Q ++ + L GKP LKD S+ +I+ G
Sbjct: 117 TSGKLKEMVPIIAQYGDVLVRNLRREAETGKPVTLKDVFGAYSMDVITSTSFG 169
>pdb|2F9Q|A Chain A, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|B Chain B, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|C Chain C, Crystal Structure Of Human Cytochrome P450 2d6
pdb|2F9Q|D Chain D, Crystal Structure Of Human Cytochrome P450 2d6
Length = 479
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/138 (19%), Positives = 52/138 (37%), Gaps = 9/138 (6%)
Query: 91 LSEKYGPIMQLKFGSFPVVVGSSAEMAKVILKTQDALFSGRPKTAAGKYTTFN--YSDIT 148
L ++G + L+ PVVV + + L T + RP + F +
Sbjct: 39 LRRRFGDVFSLQLAWTPVVVLNGLAAVREALVTHGEDTADRPPVPITQILGFGPRSQGVF 98
Query: 149 WSPYGPYWRQARKICSMELFSVKRL----ESFEYIRVQELNLFLNRLYESFGKPTILKDH 204
+ YGP WR+ R+ + +++ L +S E +E G+P
Sbjct: 99 LARYGPAWREQRRF---SVSTLRNLGLGKKSLEQWVTEEAACLCAAFANHSGRPFRPNGL 155
Query: 205 LSDLSLAIISRMVLGKKY 222
L +I+ + G+++
Sbjct: 156 LDKAVSNVIASLTCGRRF 173
>pdb|2VYE|A Chain A, Crystal Structure Of The Dnac-Ssdna Complex
pdb|2VYE|B Chain B, Crystal Structure Of The Dnac-Ssdna Complex
pdb|2VYF|A Chain A, Crystal Structure Of The Dnac
pdb|2VYF|B Chain B, Crystal Structure Of The Dnac
Length = 454
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 12/108 (11%)
Query: 221 KYTDKQLENEVVTPQEFTAMVDELFMLNGVL---DVGDSIPWLGFLDLQGNIKKMKALAK 277
+ DK ++VT A +++L + GV ++ DS+P ++ I + K+L +
Sbjct: 57 RVADKGEPVDLVTVTAELAALEQLEEVGGVSYLSELADSVPTAANVEYYARIVEEKSLLR 116
Query: 278 RFDKFLEHVLDEHDARRKGVENYVAKDMVDVLLQLADDPTLEVKIERH 325
R + + + Y +D +DVLL A+ +EV +H
Sbjct: 117 RLIRTATSI---------AQDGYTREDEIDVLLDEAERKIMEVSQRKH 155
>pdb|3QM4|A Chain A, Human Cytochrome P450 (Cyp) 2d6 - Prinomastat Complex
pdb|3QM4|B Chain B, Human Cytochrome P450 (Cyp) 2d6 - Prinomastat Complex
pdb|3TBG|A Chain A, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TBG|B Chain B, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TBG|C Chain C, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TBG|D Chain D, Human Cytochrome P450 2d6 With Two Thioridazines Bound In
Active Site
pdb|3TDA|A Chain A, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
pdb|3TDA|B Chain B, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
pdb|3TDA|C Chain C, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
pdb|3TDA|D Chain D, Competitive Replacement Of Thioridazine By Prinomastat In
Crystals Of Cytochrome P450 2d6
Length = 479
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 82/215 (38%), Gaps = 32/215 (14%)
Query: 91 LSEKYGPIMQLKFGSFPVVVGSSAEMAKVILKTQDALFSGRPKTAAGKYTTFN--YSDIT 148
L ++G + L+ PVVV + + L T + RP + F +
Sbjct: 39 LRRRFGDVFSLQLAWTPVVVLNGLAAVREALVTHGEDTADRPPVPITQILGFGPRSQGVF 98
Query: 149 WSPYGPYWRQARKICSMELFSVKRL-------ESFEYIRVQELNLFLNRLYESF----GK 197
+ YGP WR+ R+ FSV L +S E +E L +F G+
Sbjct: 99 LARYGPAWREQRR------FSVSTLRNLGLGKKSLEQWVTEEAAC----LCAAFANHSGR 148
Query: 198 PTILKDHLSDLSLAIISRMVLGKK--YTDKQLENEVVTPQEFTAMVDELFMLNGVLDVGD 255
P L +I+ + G++ Y D + + QE + +E L VL +
Sbjct: 149 PFRPNGLLDKAVSNVIASLTCGRRFEYDDPRFLRLLDLAQE--GLKEESGFLREVL---N 203
Query: 256 SIPWLGFLDLQGNIKKMKALAKRFDKFLEHVLDEH 290
++P L L + K+ K F L+ +L EH
Sbjct: 204 AVPVL--LHIPALAGKVLRFQKAFLTQLDELLTEH 236
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,717,481
Number of Sequences: 62578
Number of extensions: 395853
Number of successful extensions: 964
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 906
Number of HSP's gapped (non-prelim): 44
length of query: 332
length of database: 14,973,337
effective HSP length: 99
effective length of query: 233
effective length of database: 8,778,115
effective search space: 2045300795
effective search space used: 2045300795
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)