BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038649
(130 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UGH|E Chain E, Crystal Structure Of Human Uracil-Dna Glycosylase In
Complex With A Protein Inhibitor: Protein Mimicry Of Dna
pdb|1SSP|E Chain E, Wild-Type Uracil-Dna Glycosylase Bound To
Uracil-Containing Dna
pdb|1EMH|A Chain A, Crystal Structure Of Human Uracil-Dna Glycosylase Bound To
Uncleaved Substrate-Containing Dna
pdb|1EMJ|A Chain A, Uracil-Dna Glycosylase Bound To Dna Containing A 4'-Thio-
2'deoxyuridine Analog Product
pdb|1Q3F|A Chain A, Uracil Dna Glycosylase Bound To A Cationic 1-Aza-2'-
Deoxyribose-Contianing Dna
pdb|2HXM|A Chain A, Complex Of Ung2 And A Small Molecule Synthetic Inhibitor
pdb|1AKZ|A Chain A, Human Uracil-Dna Glycosylase
pdb|2OXM|A Chain A, Crystal Structure Of A Ung2MODIFIED DNA COMPLEX THAT
Represent A Stabilized Short-Lived Extrahelical State In
Ezymatic Dna Base Flipping
pdb|2OYT|A Chain A, Crystal Structure Of Ung2DNA(TM)
pdb|3FCF|A Chain A, Complex Of Ung2 And A Fragment-Based Designed Inhibitor
pdb|3FCI|A Chain A, Complex Of Ung2 And A Fragment-Based Designed Inhibitor
pdb|3FCK|B Chain B, Complex Of Ung2 And A Fragment-Based Design Inhibitor
pdb|3FCL|A Chain A, Complex Of Ung2 And A Fragment-Based Designed Inhibitor
pdb|3FCL|B Chain B, Complex Of Ung2 And A Fragment-Based Designed Inhibitor
Length = 223
Score = 124 bits (311), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 71/91 (78%)
Query: 39 HQANSHAKKGWEQFTDAVIKAISDKKEGVVFLLWGNSAQEKSRLINVTKHHILKAAHPSG 98
HQANSH ++GWEQFTDAV+ ++ G+VFLLWG+ AQ+K I+ +HH+L+ AHPS
Sbjct: 131 HQANSHKERGWEQFTDAVVSWLNQNSNGLVFLLWGSYAQKKGSAIDRKRHHVLQTAHPSP 190
Query: 99 LSANRGFFGCRHFSRTNQILEQMGMTPIDWQ 129
LS RGFFGCRHFS+TN++L++ G PIDW+
Sbjct: 191 LSVYRGFFGCRHFSKTNELLQKSGKKPIDWK 221
>pdb|1YUO|A Chain A, Optimisation Of The Surface Electrostatics As A Strategy
For Cold Adaptation Of Uracil-Dna N-Glycosylase
(Ung)from Atlantic Cod (Gadus Morhua)
Length = 223
Score = 124 bits (311), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 71/91 (78%)
Query: 39 HQANSHAKKGWEQFTDAVIKAISDKKEGVVFLLWGNSAQEKSRLINVTKHHILKAAHPSG 98
HQANSH ++GWEQFTDAV+ ++ G+VFLLWG+ AQ+K I+ +HH+L+ AHPS
Sbjct: 131 HQANSHKERGWEQFTDAVVSWLNQNSNGLVFLLWGSYAQKKGSAIDRKRHHVLQTAHPSP 190
Query: 99 LSANRGFFGCRHFSRTNQILEQMGMTPIDWQ 129
LS RGFFGCRHFS+TN++L++ G PIDW+
Sbjct: 191 LSVYRGFFGCRHFSKTNELLQKSGKKPIDWK 221
>pdb|3TKB|A Chain A, Crystal Structure Of Human Uracil-Dna Glycosylase
D183gK302R MUTANT
Length = 223
Score = 124 bits (310), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 71/91 (78%)
Query: 39 HQANSHAKKGWEQFTDAVIKAISDKKEGVVFLLWGNSAQEKSRLINVTKHHILKAAHPSG 98
HQANSH ++GWEQFTDAV+ ++ G+VFLLWG+ AQ+K I+ +HH+L+ AHPS
Sbjct: 131 HQANSHKERGWEQFTDAVVSWLNQNSNGLVFLLWGSYAQKKGSAIDRKRHHVLQTAHPSP 190
Query: 99 LSANRGFFGCRHFSRTNQILEQMGMTPIDWQ 129
LS RGFFGCRHFS+TN++L++ G PIDW+
Sbjct: 191 LSVYRGFFGCRHFSKTNELLQKSGKKPIDWR 221
>pdb|3UF7|A Chain A, Co-Crystal Structure Of Escherichia Coli Uracil-Dna
Glycosylase And A C-Terminal Fragement Of The
Single-Stranded Dna-Binding Protein
Length = 237
Score = 122 bits (306), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 57/89 (64%), Positives = 67/89 (75%)
Query: 40 QANSHAKKGWEQFTDAVIKAISDKKEGVVFLLWGNSAQEKSRLINVTKHHILKAAHPSGL 99
QA+SHA GWE FTD VI I+ +EGVVFLLWG+ AQ+K +I+ +HH+LKA HPS L
Sbjct: 132 QAHSHASLGWETFTDKVISLINQHREGVVFLLWGSHAQKKGAIIDKQRHHVLKAPHPSPL 191
Query: 100 SANRGFFGCRHFSRTNQILEQMGMTPIDW 128
SA+RGFFGC HF NQ LEQ G TPIDW
Sbjct: 192 SAHRGFFGCNHFVLANQWLEQRGETPIDW 220
>pdb|1EUI|A Chain A, Escherichia Coli Uracil-Dna Glycosylase Complex With
Uracil- Dna Glycosylase Inhibitor Protein
pdb|1EUI|B Chain B, Escherichia Coli Uracil-Dna Glycosylase Complex With
Uracil- Dna Glycosylase Inhibitor Protein
Length = 228
Score = 122 bits (306), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 57/89 (64%), Positives = 67/89 (75%)
Query: 40 QANSHAKKGWEQFTDAVIKAISDKKEGVVFLLWGNSAQEKSRLINVTKHHILKAAHPSGL 99
QA+SHA GWE FTD VI I+ +EGVVFLLWG+ AQ+K +I+ +HH+LKA HPS L
Sbjct: 131 QAHSHASLGWETFTDKVISLINQHREGVVFLLWGSHAQKKGAIIDKQRHHVLKAPHPSPL 190
Query: 100 SANRGFFGCRHFSRTNQILEQMGMTPIDW 128
SA+RGFFGC HF NQ LEQ G TPIDW
Sbjct: 191 SAHRGFFGCNHFVLANQWLEQRGETPIDW 219
>pdb|1UUG|A Chain A, Escherichia Coli Uracil-Dna Glycosylase:inhibitor Complex
With Wild-Type Udg And Wild-Type Ugi
pdb|1UUG|C Chain C, Escherichia Coli Uracil-Dna Glycosylase:inhibitor Complex
With Wild-Type Udg And Wild-Type Ugi
pdb|1LQG|A Chain A, Escherichia Coli Uracil-Dna Glycosylase Complex With
Uracil- Dna Glycosylase Inhibitor Protein
pdb|1LQG|B Chain B, Escherichia Coli Uracil-Dna Glycosylase Complex With
Uracil- Dna Glycosylase Inhibitor Protein
pdb|1LQJ|A Chain A, Escherichia Coli Uracil-Dna Glycosylase
pdb|1LQJ|B Chain B, Escherichia Coli Uracil-Dna Glycosylase
pdb|1LQJ|C Chain C, Escherichia Coli Uracil-Dna Glycosylase
pdb|1LQJ|D Chain D, Escherichia Coli Uracil-Dna Glycosylase
pdb|1LQM|A Chain A, Escherichia Coli Uracil-Dna Glycosylase Complex With
Uracil- Dna Glycosylase Inhibitor Protein
pdb|1LQM|C Chain C, Escherichia Coli Uracil-Dna Glycosylase Complex With
Uracil- Dna Glycosylase Inhibitor Protein
pdb|1LQM|E Chain E, Escherichia Coli Uracil-Dna Glycosylase Complex With
Uracil- Dna Glycosylase Inhibitor Protein
pdb|1LQM|G Chain G, Escherichia Coli Uracil-Dna Glycosylase Complex With
Uracil- Dna Glycosylase Inhibitor Protein
Length = 229
Score = 122 bits (305), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 57/89 (64%), Positives = 67/89 (75%)
Query: 40 QANSHAKKGWEQFTDAVIKAISDKKEGVVFLLWGNSAQEKSRLINVTKHHILKAAHPSGL 99
QA+SHA GWE FTD VI I+ +EGVVFLLWG+ AQ+K +I+ +HH+LKA HPS L
Sbjct: 132 QAHSHASLGWETFTDKVISLINQHREGVVFLLWGSHAQKKGAIIDKQRHHVLKAPHPSPL 191
Query: 100 SANRGFFGCRHFSRTNQILEQMGMTPIDW 128
SA+RGFFGC HF NQ LEQ G TPIDW
Sbjct: 192 SAHRGFFGCNHFVLANQWLEQRGETPIDW 220
>pdb|2SSP|E Chain E, Leucine-272-Alanine Uracil-Dna Glycosylase Bound To Abasic
Site-Containing Dna
Length = 223
Score = 122 bits (305), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 52/91 (57%), Positives = 70/91 (76%)
Query: 39 HQANSHAKKGWEQFTDAVIKAISDKKEGVVFLLWGNSAQEKSRLINVTKHHILKAAHPSG 98
HQANSH ++GWEQFTDAV+ ++ G+VFLLWG+ AQ+K I+ +HH+L+ AHPS
Sbjct: 131 HQANSHKERGWEQFTDAVVSWLNQNSNGLVFLLWGSYAQKKGSAIDRKRHHVLQTAHPSP 190
Query: 99 LSANRGFFGCRHFSRTNQILEQMGMTPIDWQ 129
S RGFFGCRHFS+TN++L++ G PIDW+
Sbjct: 191 ASVYRGFFGCRHFSKTNELLQKSGKKPIDWK 221
>pdb|1EUG|A Chain A, Crystal Structure Of Escherichia Coli Uracil Dna
Glycosylase And Its Complexes With Uracil And Glycerol:
Structure And Glycosylase Mechanism Revisited
Length = 229
Score = 122 bits (305), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 57/89 (64%), Positives = 67/89 (75%)
Query: 40 QANSHAKKGWEQFTDAVIKAISDKKEGVVFLLWGNSAQEKSRLINVTKHHILKAAHPSGL 99
QA+SHA GWE FTD VI I+ +EGVVFLLWG+ AQ+K +I+ +HH+LKA HPS L
Sbjct: 132 QAHSHASLGWETFTDKVISLINQHREGVVFLLWGSHAQKKGAIIDKQRHHVLKAPHPSPL 191
Query: 100 SANRGFFGCRHFSRTNQILEQMGMTPIDW 128
SA+RGFFGC HF NQ LEQ G TPIDW
Sbjct: 192 SAHRGFFGCNHFVLANQWLEQHGETPIDW 220
>pdb|2EUG|A Chain A, Crystal Structure Of Escherichia Coli Uracil Dna
Glycosylase And Its Complexes With Uracil And Glycerol:
Structure And Glycosylase Mechanism Revisited
pdb|3EUG|A Chain A, Crystal Structure Of Escherichia Coli Uracil Dna
Glycosylase And Its Complexes With Uracil And Glycerol:
Structure And Glycosylase Mechanism Revisited
Length = 229
Score = 122 bits (305), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 57/89 (64%), Positives = 67/89 (75%)
Query: 40 QANSHAKKGWEQFTDAVIKAISDKKEGVVFLLWGNSAQEKSRLINVTKHHILKAAHPSGL 99
QA+SHA GWE FTD VI I+ +EGVVFLLWG+ AQ+K +I+ +HH+LKA HPS L
Sbjct: 132 QAHSHASLGWETFTDKVISLINQHREGVVFLLWGSHAQKKGAIIDKQRHHVLKAPHPSPL 191
Query: 100 SANRGFFGCRHFSRTNQILEQMGMTPIDW 128
SA+RGFFGC HF NQ LEQ G TPIDW
Sbjct: 192 SAHRGFFGCNHFVLANQWLEQHGETPIDW 220
>pdb|4SKN|E Chain E, A Nucleotide-flipping Mechanism From The Structure Of
Human Uracil-dna Glycosylase Bound To Dna
Length = 223
Score = 121 bits (304), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 52/91 (57%), Positives = 70/91 (76%)
Query: 39 HQANSHAKKGWEQFTDAVIKAISDKKEGVVFLLWGNSAQEKSRLINVTKHHILKAAHPSG 98
HQANSH ++GWEQFTDAV+ ++ G+VFLLWG+ AQ+K I+ +HH+L+ AHPS
Sbjct: 131 HQANSHKERGWEQFTDAVVSWLNQNSNGLVFLLWGSYAQKKGSAIDRKRHHVLQTAHPSP 190
Query: 99 LSANRGFFGCRHFSRTNQILEQMGMTPIDWQ 129
S RGFFGCRHFS+TN++L++ G PIDW+
Sbjct: 191 RSVYRGFFGCRHFSKTNELLQKSGKKPIDWK 221
>pdb|1FLZ|A Chain A, Uracil Dna Glycosylase With Uaap
Length = 228
Score = 121 bits (304), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 57/89 (64%), Positives = 67/89 (75%)
Query: 40 QANSHAKKGWEQFTDAVIKAISDKKEGVVFLLWGNSAQEKSRLINVTKHHILKAAHPSGL 99
QA+SHA GWE FTD VI I+ +EGVVFLLWG+ AQ+K +I+ +HH+LKA HPS L
Sbjct: 131 QAHSHASLGWETFTDKVISLINQHREGVVFLLWGSHAQKKGAIIDKQRHHVLKAPHPSPL 190
Query: 100 SANRGFFGCRHFSRTNQILEQMGMTPIDW 128
SA+RGFFGC HF NQ LEQ G TPIDW
Sbjct: 191 SAHRGFFGCNHFVLANQWLEQHGETPIDW 219
>pdb|2JHQ|A Chain A, Crystal Structure Of Uracil Dna-Glycosylase From Vibrio
Cholerae
Length = 226
Score = 120 bits (302), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 51/89 (57%), Positives = 70/89 (78%)
Query: 41 ANSHAKKGWEQFTDAVIKAISDKKEGVVFLLWGNSAQEKSRLINVTKHHILKAAHPSGLS 100
A+SHA GWE FTD VI A++ + G++FLLWG+ AQ+K ++I+ +HH+L A HPS LS
Sbjct: 133 AHSHANTGWETFTDRVIDALNQHRNGLIFLLWGSHAQKKGQMIDRQRHHVLMAPHPSPLS 192
Query: 101 ANRGFFGCRHFSRTNQILEQMGMTPIDWQ 129
A+RGF GCRHFS+TNQ+L+ G+ PI+WQ
Sbjct: 193 AHRGFLGCRHFSKTNQLLQAQGIAPINWQ 221
>pdb|4EUG|A Chain A, Crystallographic And Enzymatic Studies Of An Active Site
Variant H187q Of Escherichia Coli Uracil Dna
Glycosylase: Crystal Structures Of Mutant H187q And Its
Uracil Complex
pdb|5EUG|A Chain A, Crystallographic And Enzymatic Studies Of An Active Site
Variant H187q Of Escherichia Coli Uracil Dna
Glycosylase: Crystal Structures Of Mutant H187q And Its
Uracil Complex
Length = 229
Score = 119 bits (298), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 56/89 (62%), Positives = 66/89 (74%)
Query: 40 QANSHAKKGWEQFTDAVIKAISDKKEGVVFLLWGNSAQEKSRLINVTKHHILKAAHPSGL 99
QA+SHA GWE FTD VI I+ +EGVVFLLWG+ AQ+K +I+ +HH+LKA PS L
Sbjct: 132 QAHSHASLGWETFTDKVISLINQHREGVVFLLWGSHAQKKGAIIDKQRHHVLKAPQPSPL 191
Query: 100 SANRGFFGCRHFSRTNQILEQMGMTPIDW 128
SA+RGFFGC HF NQ LEQ G TPIDW
Sbjct: 192 SAHRGFFGCNHFVLANQWLEQHGETPIDW 220
>pdb|2UUG|A Chain A, Escherichia Coli Uracil-Dna Glycosylase:inhibitor Complex
With H187d Mutant Udg And Wild-Type Ugi
pdb|2UUG|B Chain B, Escherichia Coli Uracil-Dna Glycosylase:inhibitor Complex
With H187d Mutant Udg And Wild-Type Ugi
Length = 229
Score = 119 bits (297), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 56/89 (62%), Positives = 66/89 (74%)
Query: 40 QANSHAKKGWEQFTDAVIKAISDKKEGVVFLLWGNSAQEKSRLINVTKHHILKAAHPSGL 99
QA+SHA GWE FTD VI I+ +EGVVFLLWG+ AQ+K +I+ +HH+LKA PS L
Sbjct: 132 QAHSHASLGWETFTDKVISLINQHREGVVFLLWGSHAQKKGAIIDKQRHHVLKAPDPSPL 191
Query: 100 SANRGFFGCRHFSRTNQILEQMGMTPIDW 128
SA+RGFFGC HF NQ LEQ G TPIDW
Sbjct: 192 SAHRGFFGCNHFVLANQWLEQRGETPIDW 220
>pdb|1OKB|A Chain A, Crystal Structure Of Uracil-Dna Glycosylase From Atlantic
Cod (Gadus Morhua)
pdb|1OKB|B Chain B, Crystal Structure Of Uracil-Dna Glycosylase From Atlantic
Cod (Gadus Morhua)
Length = 223
Score = 118 bits (295), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 69/91 (75%)
Query: 39 HQANSHAKKGWEQFTDAVIKAISDKKEGVVFLLWGNSAQEKSRLINVTKHHILKAAHPSG 98
HQANSH +GWE FTDAVIK +S +EGVVFLLWG+ A +K I+ +HH+L+A HPS
Sbjct: 131 HQANSHKDRGWETFTDAVIKWLSVNREGVVFLLWGSYAHKKGATIDRKRHHVLQAVHPSP 190
Query: 99 LSANRGFFGCRHFSRTNQILEQMGMTPIDWQ 129
LSA+RGF GC+HFS+ N +L+ G PI+W+
Sbjct: 191 LSAHRGFLGCKHFSKANGLLKLSGTEPINWR 221
>pdb|3TR7|A Chain A, Structure Of A Uracil-Dna Glycosylase (Ung) From Coxiella
Burnetii
Length = 232
Score = 116 bits (291), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 67/91 (73%)
Query: 40 QANSHAKKGWEQFTDAVIKAISDKKEGVVFLLWGNSAQEKSRLINVTKHHILKAAHPSGL 99
+ SHA GW +FTD VI++++D EG+VFLLWG+ AQ+KS+LI +H ILKA HPS L
Sbjct: 137 KPQSHANIGWHRFTDKVIESLNDHPEGIVFLLWGSYAQKKSQLITNLRHRILKAPHPSPL 196
Query: 100 SANRGFFGCRHFSRTNQILEQMGMTPIDWQL 130
SA RGF GCRHFS+ NQ+L + G IDW L
Sbjct: 197 SAARGFLGCRHFSKANQLLHEXGRGEIDWAL 227
>pdb|2BOO|A Chain A, The Crystal Structure Of Uracil-Dna N-Glycosylase (Ung)
From Deinococcus Radiodurans
Length = 247
Score = 107 bits (267), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 50/91 (54%), Positives = 68/91 (74%), Gaps = 1/91 (1%)
Query: 40 QANSHAKKGWEQFTDAVIKAISDKKEGVVFLLWGNSAQEKSRLINVTKHHILKAAHPSGL 99
QANSH KGWE FTDAVIKA++ K+E VVF+LWG+ A++K +LI H ++++ HPS L
Sbjct: 151 QANSHQGKGWEHFTDAVIKAVNAKEERVVFILWGSYARKKKKLITGKNHVVIESGHPSPL 210
Query: 100 SANRGFFGCRHFSRTNQILEQMGMTPIDWQL 130
S + FFG R FS+TN+ LE+ G P++WQL
Sbjct: 211 S-EQYFFGTRPFSKTNEALEKAGRGPVEWQL 240
>pdb|3UFM|A Chain A, Co-Crystal Structure Of Deinococcus Radiodurans Uracil-Dna
Glycosylase And The C-Terminus Of The Single-Stranded
Dna-Binding Protein
Length = 255
Score = 107 bits (267), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 50/91 (54%), Positives = 68/91 (74%), Gaps = 1/91 (1%)
Query: 40 QANSHAKKGWEQFTDAVIKAISDKKEGVVFLLWGNSAQEKSRLINVTKHHILKAAHPSGL 99
QANSH KGWE FTDAVIKA++ K+E VVF+LWG+ A++K +LI H ++++ HPS L
Sbjct: 151 QANSHQGKGWEHFTDAVIKAVNAKEERVVFILWGSYARKKKKLITGKNHVVIESGHPSPL 210
Query: 100 SANRGFFGCRHFSRTNQILEQMGMTPIDWQL 130
S + FFG R FS+TN+ LE+ G P++WQL
Sbjct: 211 S-EQYFFGTRPFSKTNEALEKAGRGPVEWQL 240
>pdb|3CXM|A Chain A, Leishmania Naiffi Uracil-Dna Glycosylase In Complex With
5-Bromouracil
Length = 268
Score = 102 bits (254), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 51/94 (54%), Positives = 66/94 (70%), Gaps = 2/94 (2%)
Query: 39 HQANSHAK-KGWEQFTDAVIKAISDKKEG-VVFLLWGNSAQEKSRLINVTKHHILKAAHP 96
H+ANSH+K GW FTDAVI+ +S +VFLLWG AQ+K RLI+ +H +L+ HP
Sbjct: 168 HKANSHSKTSGWAAFTDAVIQHLSQHHPNRLVFLLWGGYAQQKKRLIDANRHVVLENVHP 227
Query: 97 SGLSANRGFFGCRHFSRTNQILEQMGMTPIDWQL 130
S LSANRG+FGCR FS N+ L++M P+ WQL
Sbjct: 228 SPLSANRGWFGCRCFSACNEALQRMSHLPMHWQL 261
>pdb|2J8X|A Chain A, Epstein-Barr Virus Uracil-Dna Glycosylase In Complex With
Ugi From Pbs-2
pdb|2J8X|C Chain C, Epstein-Barr Virus Uracil-Dna Glycosylase In Complex With
Ugi From Pbs-2
Length = 231
Score = 78.2 bits (191), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/100 (41%), Positives = 56/100 (56%), Gaps = 7/100 (7%)
Query: 38 RHQANSHAKKGWEQFTDAVIKAISDKKEGVVFLLWGNSAQEKSRLINVTKHHILKAAHPS 97
+ + SHA GW FTD VI +S++ + VF+LWG A +K+ LIN KH +L + HPS
Sbjct: 132 KGKPGSHADIGWAWFTDHVISLLSERLKACVFMLWGAKAGDKASLINSKKHLVLTSQHPS 191
Query: 98 GL-------SANRGFFGCRHFSRTNQILEQMGMTPIDWQL 130
L SA + F G HF N L + G+ IDW+L
Sbjct: 192 PLAQNSTRKSAQQKFLGNNHFVLANNFLREKGLGEIDWRL 231
>pdb|1UDI|E Chain E, Nucleotide Mimicry In The Crystal Structure Of The Uracil-
Dna Glycosylase-Uracil Glycosylase Inhibitor Protein
Complex
pdb|1LAU|E Chain E, Uracil-Dna Glycosylase
pdb|1UDG|A Chain A, The Structural Basis Of Specific Base Excision Repair By
Uracil-Dna Glycosylase
pdb|1UDH|A Chain A, The Structural Basis Of Specific Base Excision Repair By
Uracil-Dna Glycosylase
Length = 244
Score = 74.3 bits (181), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 56/93 (60%), Gaps = 2/93 (2%)
Query: 38 RHQANSHAKKGWEQFTDAVIKAISDKKEGVVFLLWGNSAQEKSRLINVTKHHILKAAHPS 97
R A SH++ GW++F VI+ ++ ++ G+VF+LWG AQ R + H +LK +HPS
Sbjct: 154 RGAAASHSRIGWDRFVGGVIRRLAARRPGLVFMLWGTHAQNAIR-PDPRVHCVLKFSHPS 212
Query: 98 GLSANRGFFGCRHFSRTNQILEQMGMTPIDWQL 130
LS F C+HF N+ LE ++PIDW +
Sbjct: 213 PLS-KVPFGTCQHFLVANRYLETRSISPIDWSV 244
>pdb|2ZHX|A Chain A, Crystal Structure Of Uracil-Dna Glycosylase From
Mycobacterium Tuberculosis In Complex With A
Proteinaceous Inhibitor
pdb|2ZHX|C Chain C, Crystal Structure Of Uracil-Dna Glycosylase From
Mycobacterium Tuberculosis In Complex With A
Proteinaceous Inhibitor
pdb|2ZHX|E Chain E, Crystal Structure Of Uracil-Dna Glycosylase From
Mycobacterium Tuberculosis In Complex With A
Proteinaceous Inhibitor
pdb|2ZHX|G Chain G, Crystal Structure Of Uracil-Dna Glycosylase From
Mycobacterium Tuberculosis In Complex With A
Proteinaceous Inhibitor
pdb|2ZHX|I Chain I, Crystal Structure Of Uracil-Dna Glycosylase From
Mycobacterium Tuberculosis In Complex With A
Proteinaceous Inhibitor
pdb|2ZHX|K Chain K, Crystal Structure Of Uracil-Dna Glycosylase From
Mycobacterium Tuberculosis In Complex With A
Proteinaceous Inhibitor
pdb|2ZHX|M Chain M, Crystal Structure Of Uracil-Dna Glycosylase From
Mycobacterium Tuberculosis In Complex With A
Proteinaceous Inhibitor
pdb|3A7N|A Chain A, Crystal Structure Of Uracil-Dna Glycosylase From
Mycobacterium Tuberculosis
Length = 238
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 54/88 (61%)
Query: 43 SHAKKGWEQFTDAVIKAISDKKEGVVFLLWGNSAQEKSRLINVTKHHILKAAHPSGLSAN 102
SH KGWE T+ I+A++ + +V +LWG A ++ +++ HPS LSA+
Sbjct: 150 SHRGKGWEAVTECAIRALAARAAPLVAILWGRDASTLKPMLAAGNCVAIESPHPSPLSAS 209
Query: 103 RGFFGCRHFSRTNQILEQMGMTPIDWQL 130
RGFFG R FSR N++L MG PIDW+L
Sbjct: 210 RGFFGSRPFSRANELLVGMGAEPIDWRL 237
>pdb|2C53|A Chain A, A Comparative Study Of Uracil Dna Glycosylases From Human
And Herpes Simplex Virus Type 1
pdb|2C56|A Chain A, A Comparative Study Of Uracil Dna Glycosylases From Human
And Herpes Simplex Virus Type 1
Length = 244
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 56/93 (60%), Gaps = 2/93 (2%)
Query: 38 RHQANSHAKKGWEQFTDAVIKAISDKKEGVVFLLWGNSAQEKSRLINVTKHHILKAAHPS 97
R A SH++ GW++F VI+ ++ ++ G+VF+LWG AQ R + H +LK ++PS
Sbjct: 154 RGAAASHSRIGWDRFVGGVIRRLAARRPGLVFMLWGTHAQNAIR-PDPRVHCVLKFSNPS 212
Query: 98 GLSANRGFFGCRHFSRTNQILEQMGMTPIDWQL 130
LS F C+HF N+ LE ++PIDW +
Sbjct: 213 PLS-KVPFGTCQHFLVANRYLETRSISPIDWSV 244
>pdb|4DZ4|A Chain A, X-Ray Crystal Structure Of A Hypothetical Agmatinase From
Burkholderia Thailandensis
pdb|4DZ4|B Chain B, X-Ray Crystal Structure Of A Hypothetical Agmatinase From
Burkholderia Thailandensis
pdb|4DZ4|C Chain C, X-Ray Crystal Structure Of A Hypothetical Agmatinase From
Burkholderia Thailandensis
pdb|4DZ4|D Chain D, X-Ray Crystal Structure Of A Hypothetical Agmatinase From
Burkholderia Thailandensis
pdb|4DZ4|E Chain E, X-Ray Crystal Structure Of A Hypothetical Agmatinase From
Burkholderia Thailandensis
pdb|4DZ4|F Chain F, X-Ray Crystal Structure Of A Hypothetical Agmatinase From
Burkholderia Thailandensis
Length = 324
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
Query: 13 MLVEDFATFIEPLKLLFHDNHCSGWRHQANSHAKKGWEQFTDAVIKAISDKKEGV 67
+L+ + +PL L+ D HC W A G F AV + D K V
Sbjct: 145 LLIAHAQKYGKPLSLIHFDAHCDTWADDAPDSLNHG-TMFYKAVKDGLIDPKASV 198
>pdb|3L09|A Chain A, Crystal Structure Of Putative Transcriptional Regulator
(Jann_22dec04_contig27_revised_gene3569) From Jannaschia
Sp. Ccs1 At 2.81 A Resolution
pdb|3L09|B Chain B, Crystal Structure Of Putative Transcriptional Regulator
(Jann_22dec04_contig27_revised_gene3569) From Jannaschia
Sp. Ccs1 At 2.81 A Resolution
pdb|3L09|C Chain C, Crystal Structure Of Putative Transcriptional Regulator
(Jann_22dec04_contig27_revised_gene3569) From Jannaschia
Sp. Ccs1 At 2.81 A Resolution
pdb|3L09|D Chain D, Crystal Structure Of Putative Transcriptional Regulator
(Jann_22dec04_contig27_revised_gene3569) From Jannaschia
Sp. Ccs1 At 2.81 A Resolution
Length = 266
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 97 SGLSANRGFFGCRHFSRTNQILEQMGMTPIDWQL 130
+ L R CR +R +Q+L+Q+G DW L
Sbjct: 227 AALGGARAEISCR--ARVHQLLDQLGSVEPDWDL 258
>pdb|4HZ4|A Chain A, Crystal Structure Of Glutathione S-Transferase B4xh91
(Target Efi- 501787) From Actinobacillus
Pleuropneumoniae
Length = 217
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 1/72 (1%)
Query: 43 SHAKKGWEQFTDAVIKAISDKKEGVVF-LLWGNSAQEKSRLINVTKHHILKAAHPSGLSA 101
SH +K E T V + ++ + F L WG + K+ N+T++ HP+ L A
Sbjct: 138 SHVEKSLEGKTWIVGEQLTGADFALSFPLQWGLNYVNKADYPNITRYLEQIETHPAYLKA 197
Query: 102 NRGFFGCRHFSR 113
N G SR
Sbjct: 198 NEKTDGGLDLSR 209
>pdb|1Q8G|A Chain A, Nmr Structure Of Human Cofilin
pdb|1Q8X|A Chain A, Nmr Structure Of Human Cofilin
pdb|3J0S|M Chain M, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|O Chain O, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|N Chain N, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|Q Chain Q, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|P Chain P, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|S Chain S, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|R Chain R, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|U Chain U, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|T Chain T, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|W Chain W, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|V Chain V, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|X Chain X, Remodeling Of Actin Filaments By Adf Cofilin Proteins
Length = 166
Score = 25.4 bits (54), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 19/76 (25%)
Query: 18 FATFIEPLKLLFHDNHCSGWRHQANSHAKKGWEQFTDAVIKAISDKKEGVVFLLWG-NSA 76
+ATF++ + D C + A K+ KKE +VF+ W SA
Sbjct: 68 YATFVK----MLPDKDCRYALYDATYETKES--------------KKEDLVFIFWAPESA 109
Query: 77 QEKSRLINVTKHHILK 92
KS++I + +K
Sbjct: 110 PLKSKMIYASSKDAIK 125
>pdb|1NI5|A Chain A, Structure Of The Mesj Pp-Atpase From Escherichia Coli
Length = 433
Score = 25.4 bits (54), Expect = 9.0, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 19/26 (73%)
Query: 2 LAWVKSLSGTSMLVEDFATFIEPLKL 27
L W+KS++G S + + T+++PL+L
Sbjct: 308 LWWIKSVTGQSENIVPWQTWLQPLEL 333
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.133 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,960,992
Number of Sequences: 62578
Number of extensions: 141715
Number of successful extensions: 294
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 263
Number of HSP's gapped (non-prelim): 29
length of query: 130
length of database: 14,973,337
effective HSP length: 88
effective length of query: 42
effective length of database: 9,466,473
effective search space: 397591866
effective search space used: 397591866
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)