Query 038649
Match_columns 130
No_of_seqs 137 out of 1036
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 23:06:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038649.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038649hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fci_A UDG, uracil-DNA glycosy 100.0 2.9E-51 1E-55 326.1 12.4 118 13-130 95-222 (223)
2 3tr7_A UDG, uracil-DNA glycosy 100.0 1.6E-50 5.4E-55 323.4 13.1 117 13-130 101-227 (232)
3 2j8x_A Uracil-DNA glycosylase; 100.0 2.3E-50 7.8E-55 322.3 13.2 118 13-130 97-231 (231)
4 3a7n_A UDG, uracil-DNA glycosy 100.0 6E-50 2.1E-54 321.0 12.0 117 13-130 111-237 (238)
5 2boo_A UDG, uracil-DNA glycosy 100.0 1.4E-49 4.6E-54 320.4 12.9 118 12-130 113-240 (247)
6 3cxm_A Uracil-DNA glycosylase; 100.0 1.2E-49 4.1E-54 323.7 12.3 118 13-130 132-261 (268)
7 3uf7_A UDG, uracil-DNA glycosy 100.0 2E-49 6.8E-54 317.7 12.2 118 12-129 94-221 (237)
8 1udg_A Uracil-DNA glycosylase; 100.0 8.7E-49 3E-53 315.3 11.8 116 13-130 119-244 (244)
9 2owr_A UDG, uracil-DNA glycosy 100.0 6.5E-45 2.2E-49 288.8 9.0 112 13-130 95-214 (218)
10 1oe4_A SMUG1, single-strand se 82.5 1.5 5E-05 34.9 4.4 56 65-123 183-241 (247)
11 1vk2_A Uracil-DNA glycosylase 54.4 12 0.0004 28.1 3.7 51 49-103 117-181 (204)
12 1ui0_A Uracil-DNA glycosylase; 39.0 33 0.0011 25.7 4.1 66 52-121 104-188 (205)
13 2l6m_A Protein dicer; DSRBD, h 37.9 15 0.00051 25.9 1.8 31 95-126 10-41 (121)
14 2h2w_A Homoserine O-succinyltr 36.0 29 0.00098 28.0 3.5 37 39-76 119-159 (312)
15 3ikb_A Uncharacterized conserv 25.5 1E+02 0.0034 23.3 4.7 34 67-100 123-169 (198)
16 2vdj_A Homoserine O-succinyltr 21.9 44 0.0015 26.7 2.2 28 49-77 121-148 (301)
No 1
>3fci_A UDG, uracil-DNA glycosylase; DNA repair, alternative splicing, disease mutation, DNA damage, glycosidase, HOST- virus interaction, hydrolase; HET: 3FI; 1.27A {Homo sapiens} PDB: 1emh_A* 1emj_A* 1q3f_A* 1ssp_E* 1ugh_E 1akz_A* 2oxm_A* 2oyt_A* 3fcf_A* 2hxm_A* 3fck_B* 3fcl_A* 2ssp_E* 1yuo_A 3tkb_A 4skn_E* 1okb_A
Probab=100.00 E-value=2.9e-51 Score=326.06 Aligned_cols=118 Identities=49% Similarity=0.885 Sum_probs=114.4
Q ss_pred hhhhccCcccCCCc---------eeeeeecccc-ccCCCCCcCCCChHHHHHHHHHHHhhcCCCeEEEeecHHHHhcccc
Q 038649 13 MLVEDFATFIEPLK---------LLFHDNHCSG-WRHQANSHAKKGWEQFTDAVIKAISDKKEGVVFLLWGNSAQEKSRL 82 (130)
Q Consensus 13 ~l~~~~~~~~~p~~---------~vLllN~~lt-~~~~~~SH~~~GWe~fT~~vI~~l~~~~~~vVFlLWG~~A~~~~~~ 82 (130)
+|.+|+|+|..|.| +|||||++|| ++|+|+||++.|||.||++||+.|+++++++||||||++||++.++
T Consensus 95 EL~~dl~g~~~p~~G~L~~WA~QGVLLLNt~LTV~~g~a~SH~~~GWe~fTd~vI~~l~~~~~~vVFiLWG~~Aq~k~~~ 174 (223)
T 3fci_A 95 ELSTDIEDFVHPGHGDLSGWAKQGVLLLNAVLTVRAHQANSHKERGWEQFTDAVVSWLNQNSNGLVFLLWGSYAQKKGSA 174 (223)
T ss_dssp HHHHHSTTCCCCSSCCTHHHHTTTEEEEESSCCEETTCTTTTTTSSHHHHHHHHHHHHHHHCCSCEEEEESHHHHHHTTT
T ss_pred HHHHhccCCCCCCCccchhHHhCCEEEEeeEEEEeCCCCCccccCChHHHHHHHHHHHHhcCCCeEEEEECHHHHhchhc
Confidence 68899999999988 4999999999 9999999999999999999999999999999999999999999999
Q ss_pred cCCCcceEEEcCCCCccCCCCCCCCCCchHHHHHHHHHcCCCCccccC
Q 038649 83 INVTKHHILKAAHPSGLSANRGFFGCRHFSRTNQILEQMGMTPIDWQL 130 (130)
Q Consensus 83 I~~~~h~VL~s~HPSPlSa~rgF~g~~hF~k~N~~L~~~g~~pIdW~l 130 (130)
||.++|+||+|+|||||||+||||||+||++||+||+++|++||||++
T Consensus 175 i~~~~h~vl~s~HPSPLSa~rgFfg~~~Fs~~N~~L~~~g~~pIdW~~ 222 (223)
T 3fci_A 175 IDRKRHHVLQTAHPSPLSVYRGFFGCRHFSKTNELLQKSGKKPIDWKE 222 (223)
T ss_dssp CCTTTSEEEEECCSSTTTGGGTTTTCCHHHHHHHHHHHTTCCCCCTTC
T ss_pred cCCCCeeEEEeCCCChhhcccCCCCCChHHHHHHHHHHcCCCCCCCcc
Confidence 999999999999999999999999999999999999999999999974
No 2
>3tr7_A UDG, uracil-DNA glycosylase; DNA metabolism, hydrolase; 2.20A {Coxiella burnetii}
Probab=100.00 E-value=1.6e-50 Score=323.39 Aligned_cols=117 Identities=50% Similarity=0.820 Sum_probs=112.7
Q ss_pred hhhhccCcccCCCc---------eeeeeecccc-ccCCCCCcCCCChHHHHHHHHHHHhhcCCCeEEEeecHHHHhcccc
Q 038649 13 MLVEDFATFIEPLK---------LLFHDNHCSG-WRHQANSHAKKGWEQFTDAVIKAISDKKEGVVFLLWGNSAQEKSRL 82 (130)
Q Consensus 13 ~l~~~~~~~~~p~~---------~vLllN~~lt-~~~~~~SH~~~GWe~fT~~vI~~l~~~~~~vVFlLWG~~A~~~~~~ 82 (130)
+|.+|+ +|..|.| +|||||++|| ++++|+||+++|||.||++||+.|+++++++||||||++||++.++
T Consensus 101 EL~~d~-g~~~p~~G~L~~WA~QGVLLLNt~LTV~~g~a~SH~~~GWe~fTd~vI~~l~~~~~~vVFiLWG~~Aq~k~~~ 179 (232)
T 3tr7_A 101 ELHADL-GVSIPSHGFLEKWAKQGVLLLNAALTVEAGKPQSHANIGWHRFTDKVIESLNDHPEGIVFLLWGSYAQKKSQL 179 (232)
T ss_dssp HHHHHH-CCCCCSSCCCHHHHHHTEEEEESSSCEETTCTTTTTTSSHHHHHHHHHHHGGGCSSCCEEEEESHHHHHGGGG
T ss_pred HHHHhh-CCCCCCCCCcHhHHhCCEEeeeceEEEECCCCCccccCCcHHHHHHHHHHHHhcCCCeEEEEeCHHHHhchhc
Confidence 677888 8888888 4999999999 9999999999999999999999999999999999999999999999
Q ss_pred cCCCcceEEEcCCCCccCCCCCCCCCCchHHHHHHHHHcCCCCccccC
Q 038649 83 INVTKHHILKAAHPSGLSANRGFFGCRHFSRTNQILEQMGMTPIDWQL 130 (130)
Q Consensus 83 I~~~~h~VL~s~HPSPlSa~rgF~g~~hF~k~N~~L~~~g~~pIdW~l 130 (130)
||.++|+||+|+|||||||+||||||+||++||+||+++|++||||++
T Consensus 180 I~~~~h~vl~s~HPSPLSa~rgFfg~~~Fsk~N~~L~~~g~~pIdW~l 227 (232)
T 3tr7_A 180 ITNLRHRILKAPHPSPLSAARGFLGCRHFSKANQLLHEMGRGEIDWAL 227 (232)
T ss_dssp CCCTTSEEEEECCSCTTCSSCCSTTCCHHHHHHHHHHHTTSCCCCCCC
T ss_pred CCCCCeeEEEeCCCCccccccCCCCCCHHHHHHHHHHHcCCCCccCcC
Confidence 999999999999999999999999999999999999999999999975
No 3
>2j8x_A Uracil-DNA glycosylase; hydrolase-inhibitor complex, hydrolase/inhibitor complex, EB repair, lytic protein, epstein-BARR virus; 2.3A {Epstein-barr virus} SCOP: c.18.1.1
Probab=100.00 E-value=2.3e-50 Score=322.33 Aligned_cols=118 Identities=36% Similarity=0.638 Sum_probs=114.5
Q ss_pred hhhhccCcccCCCc---------eeeeeecccc-ccCCCCCcCCCChHHHHHHHHHHHhhcCCCeEEEeecHHHHhcccc
Q 038649 13 MLVEDFATFIEPLK---------LLFHDNHCSG-WRHQANSHAKKGWEQFTDAVIKAISDKKEGVVFLLWGNSAQEKSRL 82 (130)
Q Consensus 13 ~l~~~~~~~~~p~~---------~vLllN~~lt-~~~~~~SH~~~GWe~fT~~vI~~l~~~~~~vVFlLWG~~A~~~~~~ 82 (130)
+|.+|+|+|..|.| +|||||++|| ++|+|+||+++|||.||++||+.|+++++++||||||++||++.++
T Consensus 97 EL~~dl~g~~~p~~G~L~~WA~QGVLLLNtvLTV~~g~a~SH~~~GWe~fTd~vI~~l~~~~~~vVFiLWG~~Aq~k~~~ 176 (231)
T 2j8x_A 97 ELHRSLPEFSPPDHGCLDAWASQGVLLLNTILTVQKGKPGSHADIGWAWFTDHVISLLSERLKACVFMLWGAKAGDKASL 176 (231)
T ss_dssp HHHHHCTTCCCCSSCCCHHHHTTTEEEEESSCCEETTBTTTTTTSSHHHHHHHHHHHHHHHCSSCEEEEESHHHHGGGGG
T ss_pred HHHHhcCCCCCCCCCCchhHHhcCcEeeeeeEEEeCCCCCccccCChHHHHHHHHHHHHhcCCCeEEEEcCHHHHHHHhc
Confidence 68899999999988 4999999999 8999999999999999999999999999999999999999999999
Q ss_pred cCCCcceEEEcCCCCccCC-------CCCCCCCCchHHHHHHHHHcCCCCccccC
Q 038649 83 INVTKHHILKAAHPSGLSA-------NRGFFGCRHFSRTNQILEQMGMTPIDWQL 130 (130)
Q Consensus 83 I~~~~h~VL~s~HPSPlSa-------~rgF~g~~hF~k~N~~L~~~g~~pIdW~l 130 (130)
|+.++|+||+|+||||||| +||||||+||++||+||+++|++||||++
T Consensus 177 i~~~~h~vl~s~HPSPlSa~~~~~~~~rgFfg~~~Fs~~N~~L~~~g~~pIdW~l 231 (231)
T 2j8x_A 177 INSKKHLVLTSQHPSPLAQNSTRKSAQQKFLGNNHFVLANNFLREKGLGEIDWRL 231 (231)
T ss_dssp SCTTTSEEEEECCSSGGGGGCCSSCSSCCSTTCCHHHHHHHHHHHTTCCCCCCCC
T ss_pred CCCCCceEEEcCCCChhhcccccccCCCCCCCCCHHHHHHHHHHHcCCCCccCcC
Confidence 9999999999999999999 89999999999999999999999999975
No 4
>3a7n_A UDG, uracil-DNA glycosylase; UNG-UGI interactions, UNG-DNA complex, citrate AS protein LI ligand binding, inhibitor design; HET: FLC; 1.95A {Mycobacterium tuberculosis H37RV} PDB: 2zhx_A*
Probab=100.00 E-value=6e-50 Score=321.04 Aligned_cols=117 Identities=35% Similarity=0.633 Sum_probs=112.1
Q ss_pred hhhhccCcccCCCc---------eeeeeecccc-ccCCCCCcCCCChHHHHHHHHHHHhhcCCCeEEEeecHHHHhcccc
Q 038649 13 MLVEDFATFIEPLK---------LLFHDNHCSG-WRHQANSHAKKGWEQFTDAVIKAISDKKEGVVFLLWGNSAQEKSRL 82 (130)
Q Consensus 13 ~l~~~~~~~~~p~~---------~vLllN~~lt-~~~~~~SH~~~GWe~fT~~vI~~l~~~~~~vVFlLWG~~A~~~~~~ 82 (130)
+|.+|+ +|..|.+ +|||||++|| ++++|+||+++|||+||++||+.|+++++++||||||++||++.++
T Consensus 111 EL~~d~-g~~~p~~G~L~~WA~QGVLLLNtvLTV~~g~a~SH~~~GWe~fTd~vI~~l~~~~~~vVFiLWG~~Aq~k~~~ 189 (238)
T 3a7n_A 111 EYTADL-GYPLPSNGDLTPWAQRGVLLLNRVLTVRPSNPASHRGKGWEAVTECAIRALAARAAPLVAILWGRDASTLKPM 189 (238)
T ss_dssp HHHHHH-CCCCCSSCCCHHHHHTTEEEEESSCCBCTTCTTTTTTSSHHHHHHHHHHHHHHSSSCEEEEEESHHHHTTHHH
T ss_pred HHHHhc-CCCCCCCCChHHHHhcCeEeeeceEEEeCCCCCccccCChHHHHHHHHHHHHhcCCCeEEEEECHHHHHhhcc
Confidence 577788 7888877 4999999999 8999999999999999999999999999999999999999999999
Q ss_pred cCCCcceEEEcCCCCccCCCCCCCCCCchHHHHHHHHHcCCCCccccC
Q 038649 83 INVTKHHILKAAHPSGLSANRGFFGCRHFSRTNQILEQMGMTPIDWQL 130 (130)
Q Consensus 83 I~~~~h~VL~s~HPSPlSa~rgF~g~~hF~k~N~~L~~~g~~pIdW~l 130 (130)
|+.++|+||+|+|||||||+||||||+||++||+||+++|++||||++
T Consensus 190 I~~~~h~vl~s~HPSPLSa~rgFfg~~~Fs~~N~~L~~~g~~pIdW~l 237 (238)
T 3a7n_A 190 LAAGNCVAIESPHPSPLSASRGFFGSRPFSRANELLVGMGAEPIDWRL 237 (238)
T ss_dssp HTTSSEEEEEECCSSTTTGGGTTTTCCHHHHHHHHHHHTTCCCCCCCC
T ss_pred cCcCCceEEecCCCCccccCCCCCCCChHHHHHHHHHHcCCCCccCcC
Confidence 999999999999999999999999999999999999999999999975
No 5
>2boo_A UDG, uracil-DNA glycosylase; base excision repair, radiation resistance, DNA damage, DNA glycosidase, hydrolase; 1.80A {Deinococcus radiodurans}
Probab=100.00 E-value=1.4e-49 Score=320.38 Aligned_cols=118 Identities=47% Similarity=0.792 Sum_probs=113.7
Q ss_pred hhhhhccCcccCCCc---------eeeeeecccc-ccCCCCCcCCCChHHHHHHHHHHHhhcCCCeEEEeecHHHHhccc
Q 038649 12 SMLVEDFATFIEPLK---------LLFHDNHCSG-WRHQANSHAKKGWEQFTDAVIKAISDKKEGVVFLLWGNSAQEKSR 81 (130)
Q Consensus 12 ~~l~~~~~~~~~p~~---------~vLllN~~lt-~~~~~~SH~~~GWe~fT~~vI~~l~~~~~~vVFlLWG~~A~~~~~ 81 (130)
.+|.+|+|+|..|.| +|||||++|| ++|+|+||+++|||.||++||+.|+++++++||||||++||++++
T Consensus 113 kEL~~Dl~g~~~p~~G~L~~WA~QGVLLLNtvLTV~~g~a~SH~~~GWe~fTd~vI~~l~~~~~~vVFiLWG~~Aq~k~~ 192 (247)
T 2boo_A 113 KELTEDIPGFVAPKHGYLRSWAEQGVLLLNAVLTVRAGQANSHQGKGWEHFTDAVIKAVNAKEERVVFILWGSYARKKKK 192 (247)
T ss_dssp HHHHHHSTTCCCCSSCCCHHHHTTTEEEEESSCCEETTBTTTTTTSSHHHHHHHHHHHHHTCSSCCEEEEESHHHHGGGG
T ss_pred HHHHHhccCCCCCCCCCcHHHHhcCeEeeeceEEEeCCCCCCcccCChHHHHHHHHHHHHhcCCCeEEEEeCHHHHhhhh
Confidence 368899999999988 4999999999 999999999999999999999999999999999999999999999
Q ss_pred ccCCCcceEEEcCCCCccCCCCCCCCCCchHHHHHHHHHcCCCCccccC
Q 038649 82 LINVTKHHILKAAHPSGLSANRGFFGCRHFSRTNQILEQMGMTPIDWQL 130 (130)
Q Consensus 82 ~I~~~~h~VL~s~HPSPlSa~rgF~g~~hF~k~N~~L~~~g~~pIdW~l 130 (130)
+|+.++|+||+|+|||||||+| ||||+||++||+||+++|++||||++
T Consensus 193 ~I~~~~h~vl~s~HPSPLSa~r-Ffg~~hFs~~N~~L~~~g~~pIdW~l 240 (247)
T 2boo_A 193 LITGKNHVVIESGHPSPLSEQY-FFGTRPFSKTNEALEKAGRGPVEWQL 240 (247)
T ss_dssp GCCCTTCEEEEECCSSTTTGGG-TTTCCHHHHHHHHHHHTTCCCCCCCC
T ss_pred ccCCCCceEEecCCCChhhhCc-CCCCChHHHHHHHHHHcCCCCccCcC
Confidence 9999999999999999999999 99999999999999999999999974
No 6
>3cxm_A Uracil-DNA glycosylase; base excision repair, BER, DNA damage repair, MS SGPP, hydrolase, 5-bromouracil; 1.50A {Leishmania naiffi}
Probab=100.00 E-value=1.2e-49 Score=323.66 Aligned_cols=118 Identities=48% Similarity=0.820 Sum_probs=114.2
Q ss_pred hhhhccCcccCCCc---------eeeeeecccc-ccCCCCCcCC-CChHHHHHHHHHHHhh-cCCCeEEEeecHHHHhcc
Q 038649 13 MLVEDFATFIEPLK---------LLFHDNHCSG-WRHQANSHAK-KGWEQFTDAVIKAISD-KKEGVVFLLWGNSAQEKS 80 (130)
Q Consensus 13 ~l~~~~~~~~~p~~---------~vLllN~~lt-~~~~~~SH~~-~GWe~fT~~vI~~l~~-~~~~vVFlLWG~~A~~~~ 80 (130)
+|.+|+|+|..|.| +|||||++|| ++++|+||++ +|||+||++||+.|++ +++++||||||++||++.
T Consensus 132 EL~~Dlpg~~~p~~G~L~~WA~QGVLLLNtvLTV~~g~a~SH~~~~GWe~fTd~vI~~l~~~~~~~vVFiLWG~~Aq~k~ 211 (268)
T 3cxm_A 132 ELTTDIAGFQAPKHGYLQSWSEQGMLMLNATLTVEAHKANSHSKTSGWAAFTDAVIQHLSQHHPNRLVFLLWGGYAQQKK 211 (268)
T ss_dssp HHHHHSTTCCCCSSCCCHHHHTTTEEEEESSCCEETTCTTTTTTTSCHHHHHHHHHHHHHHHCSSCCEEEEESHHHHGGG
T ss_pred HHHhhccCCCCCCCCCcHHHHhcCeEeEeceEEEeCCCCCccCCCcChHHHHHHHHHHHHhhCCCCeEEEEeCHHHHhhH
Confidence 68899999999988 4999999999 9999999999 9999999999999999 999999999999999999
Q ss_pred cccCCCcceEEEcCCCCccCCCCCCCCCCchHHHHHHHHHcCCCCccccC
Q 038649 81 RLINVTKHHILKAAHPSGLSANRGFFGCRHFSRTNQILEQMGMTPIDWQL 130 (130)
Q Consensus 81 ~~I~~~~h~VL~s~HPSPlSa~rgF~g~~hF~k~N~~L~~~g~~pIdW~l 130 (130)
++|+.++|+||+|+|||||||+||||||+||++||+||+++|++||||++
T Consensus 212 ~lI~~~~h~vl~s~HPSPLSa~rgFfG~~hFs~~N~~L~~~g~~pIdW~l 261 (268)
T 3cxm_A 212 RLIDANRHVVLENVHPSPLSANRGWFGCRCFSACNEALQRMSHLPMHWQL 261 (268)
T ss_dssp GGSCTTTSEEEEECCSSHHHHTTTTTTCCHHHHHHHHHHHTTCCCCCCCC
T ss_pred hccCCCCceEEEeCCCCcccccCCCCCCChHHHHHHHHHHcCCCCccCcC
Confidence 99999999999999999999999999999999999999999999999974
No 7
>3uf7_A UDG, uracil-DNA glycosylase; glycosylase, SSB C-terminal, base excision repair, hydrolase; HET: SO4; 1.20A {Escherichia coli} PDB: 1uug_A 1lqj_A 1lqm_A 1lqg_A 2uug_A 1eui_A 1eug_A 4eug_A 5eug_A 3eug_A 2eug_A 1flz_A 2jhq_A
Probab=100.00 E-value=2e-49 Score=317.72 Aligned_cols=118 Identities=52% Similarity=0.841 Sum_probs=114.4
Q ss_pred hhhhhccCcccCCCc---------eeeeeecccc-ccCCCCCcCCCChHHHHHHHHHHHhhcCCCeEEEeecHHHHhccc
Q 038649 12 SMLVEDFATFIEPLK---------LLFHDNHCSG-WRHQANSHAKKGWEQFTDAVIKAISDKKEGVVFLLWGNSAQEKSR 81 (130)
Q Consensus 12 ~~l~~~~~~~~~p~~---------~vLllN~~lt-~~~~~~SH~~~GWe~fT~~vI~~l~~~~~~vVFlLWG~~A~~~~~ 81 (130)
.+|.+|++.+..|.| +|||||++|| ++++|+||+++|||.||++||+.|+++++++||||||++||++.+
T Consensus 94 kEl~~d~~~~~~p~~G~L~~WA~QGVLLLNt~LTV~~g~~~SH~~~GWe~fTd~vI~~l~~~~~~vVFlLWG~~Aq~k~~ 173 (237)
T 3uf7_A 94 KELENTIPGFTRPNHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFTDKVISLINQHREGVVFLLWGSHAQKKGA 173 (237)
T ss_dssp HHHHHHSTTCCCCSCCCCHHHHTTTEEEEESSCCEETTCTTTTTTSSHHHHHHHHHHHHHHHCSSCEEEEESHHHHHHTT
T ss_pred HHHHHhcCCCCCCCCcchHhHHhCCeEEEeeeEEEeCCCCCCCCCCCcHHHHHHHHHHHHhCCCCcEEEEecHHHHHhhh
Confidence 478999999999988 4999999999 999999999999999999999999999999999999999999999
Q ss_pred ccCCCcceEEEcCCCCccCCCCCCCCCCchHHHHHHHHHcCCCCcccc
Q 038649 82 LINVTKHHILKAAHPSGLSANRGFFGCRHFSRTNQILEQMGMTPIDWQ 129 (130)
Q Consensus 82 ~I~~~~h~VL~s~HPSPlSa~rgF~g~~hF~k~N~~L~~~g~~pIdW~ 129 (130)
+|+.++|+||+++|||||||+||||||+||++||+||+++|++||||.
T Consensus 174 ~i~~~~h~il~s~HPSPlSa~rgFfg~~~Fsk~N~~L~~~g~~pIdW~ 221 (237)
T 3uf7_A 174 IIDKQRHHVLKAPHPSPLSAHRGFFGCNHFVLANQWLEQRGETPIDWM 221 (237)
T ss_dssp TSCTTTSEEEEECCSSTTTGGGTTTTCCHHHHHHHHHHHTTCCCCCCS
T ss_pred ccCCcCceEEeCCCCCccccccCCCCCCHHHHHHHHHHHcCCCCccCC
Confidence 999999999999999999999999999999999999999999999995
No 8
>1udg_A Uracil-DNA glycosylase; hydrolase; 1.75A {Herpes simplex virus} SCOP: c.18.1.1 PDB: 1lau_E 1udh_A 1udi_E 2c53_A* 2c56_A*
Probab=100.00 E-value=8.7e-49 Score=315.25 Aligned_cols=116 Identities=33% Similarity=0.574 Sum_probs=111.2
Q ss_pred hhhhccCcccCCCc---------eeeeeecccc-ccCCCCCcCCCChHHHHHHHHHHHhhcCCCeEEEeecHHHHhcccc
Q 038649 13 MLVEDFATFIEPLK---------LLFHDNHCSG-WRHQANSHAKKGWEQFTDAVIKAISDKKEGVVFLLWGNSAQEKSRL 82 (130)
Q Consensus 13 ~l~~~~~~~~~p~~---------~vLllN~~lt-~~~~~~SH~~~GWe~fT~~vI~~l~~~~~~vVFlLWG~~A~~~~~~ 82 (130)
+|.+|+|++..|.| +|||||++|| ++|+|+||+++|||.||++||+.|+++++++||||||++||+++.
T Consensus 119 EL~~d~pg~~~p~~G~L~~WA~QGVLLLNtvLTV~~g~a~SH~~~GWe~fTd~vI~~l~~~~~~vVFiLWG~~Aq~k~~- 197 (244)
T 1udg_A 119 AVKNCYPEARMSGHGCLEKWARDGVLLLNTTLTVKRGAAASHSRIGWDRFVGGVIRRLAARRPGLVFMLWGTHAQNAIR- 197 (244)
T ss_dssp HHHHHCTTCCCCSCCCCHHHHHTTEEEEESSCCEETTBTTTTTTSSHHHHHHHHHHHHHHHCSSCEEEEESHHHHHHCC-
T ss_pred HHHhhcCCCCCCCCCChHHHHhcCeEeEeeeEEEeCCCCCccccCCcHHHHHHHHHHHHhcCCCeEEEEECHHHHhhCc-
Confidence 67889999999988 4999999999 999999999999999999999999999999999999999999987
Q ss_pred cCCCcceEEEcCCCCccCCCCCCCCCCchHHHHHHHHHcCCCCccccC
Q 038649 83 INVTKHHILKAAHPSGLSANRGFFGCRHFSRTNQILEQMGMTPIDWQL 130 (130)
Q Consensus 83 I~~~~h~VL~s~HPSPlSa~rgF~g~~hF~k~N~~L~~~g~~pIdW~l 130 (130)
|+.++|+||+|+||||||++ |||||+||++||+||+++|++||||++
T Consensus 198 i~~~~h~vl~s~HPSPLSa~-gFfg~~hFs~~N~~L~~~g~~pIdW~~ 244 (244)
T 1udg_A 198 PDPRVHCVLKFSHPSPLSKV-PFGTCQHFLVANRYLETRSISPIDWSV 244 (244)
T ss_dssp CCTTTSEEEEECCSSTTSSS-CGGGCCHHHHHHHHHHTTTCCCCCCCC
T ss_pred cCCCCceEEecCCCCccccc-ccCCCCHHHHHHHHHHHcCCCCccCcC
Confidence 89999999999999999996 899999999999999999999999975
No 9
>2owr_A UDG, uracil-DNA glycosylase; uracil-DNA glycosylase fold in the core: 3 layers (A/B/A); HET: EPE; 2.30A {Vaccinia virus} PDB: 2owq_A 3nt7_C
Probab=100.00 E-value=6.5e-45 Score=288.76 Aligned_cols=112 Identities=19% Similarity=0.248 Sum_probs=102.1
Q ss_pred hhhhccCcccCCCc-------eeeeeecccc-ccCCCCCcCCCChHHHHHHHHHHHhhcCCCeEEEeecHHHHhcccccC
Q 038649 13 MLVEDFATFIEPLK-------LLFHDNHCSG-WRHQANSHAKKGWEQFTDAVIKAISDKKEGVVFLLWGNSAQEKSRLIN 84 (130)
Q Consensus 13 ~l~~~~~~~~~p~~-------~vLllN~~lt-~~~~~~SH~~~GWe~fT~~vI~~l~~~~~~vVFlLWG~~A~~~~~~I~ 84 (130)
+|.+|+ ++..|.| +|||||++|| ++|+|+||+++ ||.||++||+.|++++ ++||||||++||++.++|+
T Consensus 95 EL~~d~-g~~~p~~G~L~A~QGVLLLNtvLTV~~g~a~SH~~~-We~fTd~vI~~l~~~~-~vVFiLWG~~Aq~k~~~I~ 171 (218)
T 2owr_A 95 SISRLT-GVIDYKGYNLNIIDGVIPWNYYLSCKLGETKSHAIY-WDKISKLLLQHITKHV-SVLYCLGKTDFSNIRAKLE 171 (218)
T ss_dssp HHHHHH-CCCCCSEECGGGSTTEEEEESSSCEETTCTTTTHHH-HHHHHHHHHHHHTTTC-SEEEEECHHHHHHHHHHCS
T ss_pred HHHHhh-CCCCCCCCceeeccCeEEEeceEEEeCCCCchHHHH-HHHHHHHHHHHHHhcC-CEEEEEeCHHHHHHHhccC
Confidence 577888 7777766 6999999999 99999999999 9999999999999998 9999999999999999999
Q ss_pred CCcceEEEcCCCCccCCCCCCCCCCchHHHHHHHHHcCCCCccccC
Q 038649 85 VTKHHILKAAHPSGLSANRGFFGCRHFSRTNQILEQMGMTPIDWQL 130 (130)
Q Consensus 85 ~~~h~VL~s~HPSPlSa~rgF~g~~hF~k~N~~L~~~g~~pIdW~l 130 (130)
.++ +||+|+|||| |+|||+||+||++||+||+++|++||||++
T Consensus 172 ~~~-~vl~s~HPSP--a~rgFfg~~~Fs~~N~~L~~~g~~pIdW~~ 214 (218)
T 2owr_A 172 SPV-TTIVGYHPAA--RDRQFEKDRSFEIINVLLELDNKAPINWAQ 214 (218)
T ss_dssp CCC-EEEEECCTTC------CCCCCCCHHHHHHHHTTTSCCCCGGG
T ss_pred CCC-cEEEecCCCc--CCCCCCCCChHHHHHHHHHHcCCCCeeccC
Confidence 988 9999999999 789999999999999999999999999974
No 10
>1oe4_A SMUG1, single-strand selective monofunctional uracil DNA glycosylase; hydrolase, hydrolase/complex, SMUG1; HET: 3DR; 2.0A {Xenopus laevis} SCOP: c.18.1.3 PDB: 1oe5_A* 1oe6_A*
Probab=82.50 E-value=1.5 Score=34.93 Aligned_cols=56 Identities=13% Similarity=0.093 Sum_probs=38.7
Q ss_pred CCeEEEeecHHHHhcccccCC---CcceEEEcCCCCccCCCCCCCCCCchHHHHHHHHHcCC
Q 038649 65 EGVVFLLWGNSAQEKSRLINV---TKHHILKAAHPSGLSANRGFFGCRHFSRTNQILEQMGM 123 (130)
Q Consensus 65 ~~vVFlLWG~~A~~~~~~I~~---~~h~VL~s~HPSPlSa~rgF~g~~hF~k~N~~L~~~g~ 123 (130)
+.-+-++-|++|++....... -...|+.-.||||-+... +.+=..++-..|+++|.
T Consensus 183 ~~~~vv~IG~yA~~~l~~~v~~~~~~~~v~~L~HPSprn~~a---n~~W~~~a~~~l~~~g~ 241 (247)
T 1oe4_A 183 GVKLVIGVGRFSEQRARKALMAEGIDVTVKGIMHPSPRNPQA---NKGWEGIVRGQLLELGV 241 (247)
T ss_dssp TCSEEEEESHHHHHHHHHHHHHTTCSCEEEEECCCCTTCGGG---TTTHHHHHHHHHHHHTC
T ss_pred CceEEEEECHHHHHHHHHHHHhhccCCCeEEeCCCCCCCccc---ccCHHHHHHHHHHHCCc
Confidence 445678899999997655421 124589999999976411 23456788888888874
No 11
>1vk2_A Uracil-DNA glycosylase TM0511; structural genomics, JCSG, P protein structure initiative, joint center for structural G hydrolase; 1.90A {Thermotoga maritima} SCOP: c.18.1.2 PDB: 1l9g_A
Probab=54.40 E-value=12 Score=28.15 Aligned_cols=51 Identities=25% Similarity=0.169 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHHhhcCCCeEEEeecHHHHhcccccC-------------CCc-ceEEEcCCCCccCCCC
Q 038649 49 WEQFTDAVIKAISDKKEGVVFLLWGNSAQEKSRLIN-------------VTK-HHILKAAHPSGLSANR 103 (130)
Q Consensus 49 We~fT~~vI~~l~~~~~~vVFlLWG~~A~~~~~~I~-------------~~~-h~VL~s~HPSPlSa~r 103 (130)
..++..+.|+.+ ++-|.++.|+.|.+..-... -.. ..++-+.||||+.+..
T Consensus 117 C~~~L~~ei~~~----~P~vIv~lG~~A~~~ll~~~~~~i~~~rg~~~~~~~~~~v~~~~HPS~llrn~ 181 (204)
T 1vk2_A 117 CGHFLLAQIEII----NPDVIVALGATALSFFVDGKKVSITKVRGNPIDWLGGKKVIPTFHPSYLLRNR 181 (204)
T ss_dssp HHHHHHHHHHHH----CCSEEEEESHHHHHHTTTTCCCCHHHHTTCCEECGGGCEEEEECCHHHHHHCC
T ss_pred HHHHHHHHHHhC----CccEEEeecHHHHHHHhccCcCchhhhcCcEEEeCCCeEEEEecCCcHHHhCc
Confidence 445666666666 23477889999987532111 012 4789999999986533
No 12
>1ui0_A Uracil-DNA glycosylase; base excision repair, iron/sulfer cluster, thermophIle, riken structural genomics/proteomics initiative, RSGI; 1.50A {Thermus thermophilus} SCOP: c.18.1.2 PDB: 1ui1_A
Probab=38.98 E-value=33 Score=25.67 Aligned_cols=66 Identities=17% Similarity=0.097 Sum_probs=38.9
Q ss_pred HHHHHHHHHhhcCCCeEEEeecHHHHhcccc----cC---C-----CcceEEEcCCCCccCCCCCCCCC-------CchH
Q 038649 52 FTDAVIKAISDKKEGVVFLLWGNSAQEKSRL----IN---V-----TKHHILKAAHPSGLSANRGFFGC-------RHFS 112 (130)
Q Consensus 52 fT~~vI~~l~~~~~~vVFlLWG~~A~~~~~~----I~---~-----~~h~VL~s~HPSPlSa~rgF~g~-------~hF~ 112 (130)
+..+.|+.+ + +=|.++.|+.|.+..-. +. . ....++-+.|||++.+....... .-|.
T Consensus 104 ~L~~ei~~l--~--P~vIv~lG~~A~~~ll~~~~~i~~~~g~~~~~~g~~v~~~~HPS~llrn~~~~~~~~k~~~~~dl~ 179 (205)
T 1ui0_A 104 WLLKQIELI--A--PQIIVPLGAVAAEFFLGEKVSITKVRGKWYEWHGIKVFPMFHPAYLLRNPSRAPGSPKHLTWLDIQ 179 (205)
T ss_dssp THHHHHHHH--C--CSEEEEBSHHHHHHHHTSCCCHHHHTTCCEEETTEEECCBCCHHHHHHSCCCSTTCHHHHHHHHHH
T ss_pred HHHHHHHhC--C--ccEEEeehHHHHHHHHccCCcHhHHhCceEeeCCCEEEEecCCCHHHhCchhhhhhhHHHHHHHHH
Confidence 666666666 2 44788999999775321 10 0 12468899999997554433222 2244
Q ss_pred HHHHHHHHc
Q 038649 113 RTNQILEQM 121 (130)
Q Consensus 113 k~N~~L~~~ 121 (130)
++-++|.+.
T Consensus 180 ~~~~~l~~~ 188 (205)
T 1ui0_A 180 EVKRALDAL 188 (205)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhc
Confidence 555555543
No 13
>2l6m_A Protein dicer; DSRBD, hydrolase; NMR {Schizosaccharomyces pombe}
Probab=37.89 E-value=15 Score=25.94 Aligned_cols=31 Identities=29% Similarity=0.412 Sum_probs=18.4
Q ss_pred CCCccCCCCC-CCCCCchHHHHHHHHHcCCCCc
Q 038649 95 HPSGLSANRG-FFGCRHFSRTNQILEQMGMTPI 126 (130)
Q Consensus 95 HPSPlSa~rg-F~g~~hF~k~N~~L~~~g~~pI 126 (130)
|.|-+- +|| |+....|+++|+.|+++|-+..
T Consensus 10 ~~~~~~-~~G~~~~~~i~~qi~Q~Lq~QGC~~~ 41 (121)
T 2l6m_A 10 HSSGLV-PRGSHMKGDIEHKVYQLLKDQGCEDF 41 (121)
T ss_dssp ------------CCSCHHHHHHHHHTTTTCCCE
T ss_pred cccCCC-cccccCCCcHHHHHHHHHHHhcHHHh
Confidence 455553 355 8888999999999999997643
No 14
>2h2w_A Homoserine O-succinyltransferase; TM0881, (EC 2.3.1.46), HOM O-transsuccinylase, HTS, (TM0881), structural genomics; 2.52A {Thermotoga maritima}
Probab=36.03 E-value=29 Score=28.03 Aligned_cols=37 Identities=14% Similarity=0.299 Sum_probs=27.1
Q ss_pred CCCCCcCC----CChHHHHHHHHHHHhhcCCCeEEEeecHHH
Q 038649 39 HQANSHAK----KGWEQFTDAVIKAISDKKEGVVFLLWGNSA 76 (130)
Q Consensus 39 ~~~~SH~~----~GWe~fT~~vI~~l~~~~~~vVFlLWG~~A 76 (130)
|.|-+|.. --|+. ..++|+...+...++++++||.+|
T Consensus 119 GsP~~~~~~ed~~yw~e-l~~li~~~~~~~~p~LGIC~GaQ~ 159 (312)
T 2h2w_A 119 GAPVELLPFEEVDYWEE-LTEIMEWSRHNVYSTMFICWAAQA 159 (312)
T ss_dssp CCSCTTSCGGGSTTHHH-HHHHHHHHHHHEEEEEEETHHHHH
T ss_pred CCCCCCCCCccCchHHH-HHHHHHHHHHcCCcEEEECHHHHH
Confidence 66655532 23666 456777777888999999999999
No 15
>3ikb_A Uncharacterized conserved protein; APC63946, streptococcus mutans UA159, structural genomics, PSI-2, protein structure initiative; HET: FLC; 1.67A {Streptococcus mutans}
Probab=25.55 E-value=1e+02 Score=23.33 Aligned_cols=34 Identities=26% Similarity=0.248 Sum_probs=22.7
Q ss_pred eEEEeecHHHHhccc------ccCC-----Cc--ceEEEcCCCCccC
Q 038649 67 VVFLLWGNSAQEKSR------LINV-----TK--HHILKAAHPSGLS 100 (130)
Q Consensus 67 vVFlLWG~~A~~~~~------~I~~-----~~--h~VL~s~HPSPlS 100 (130)
-|.++.|+.|++..- .|.. .. -.++-+.||||++
T Consensus 123 ~liv~lG~~A~~~~L~~~~~~~it~~rg~w~~~~~~~~p~~HPS~rn 169 (198)
T 3ikb_A 123 QLTILIGNYAQKYYLHQKSSVKLTDTVAHYKKYLPDYFPLVHPSPRN 169 (198)
T ss_dssp CEEEEESHHHHHHHTTCCTTSCHHHHHHTGGGGTTTEEEECCCCGGG
T ss_pred eEEEEeCHHHHHHHcCCCccCCHHHHhhhhHhhCCCEEEEeCCcccc
Confidence 588999999987421 1100 00 1589999999975
No 16
>2vdj_A Homoserine O-succinyltransferase; methionine biosynthesis, amino-acid biosynthesis, homoserine transacetylase, homoserine transsuccinylase; 2.00A {Bacillus cereus} PDB: 2ghr_A
Probab=21.95 E-value=44 Score=26.69 Aligned_cols=28 Identities=18% Similarity=0.542 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHhhcCCCeEEEeecHHHH
Q 038649 49 WEQFTDAVIKAISDKKEGVVFLLWGNSAQ 77 (130)
Q Consensus 49 We~fT~~vI~~l~~~~~~vVFlLWG~~A~ 77 (130)
|+. ..++|+...++..++++++||.+|.
T Consensus 121 w~e-l~~li~~~~~~~~~~lgIC~GaQ~~ 148 (301)
T 2vdj_A 121 WEE-LKRIMEYSKTNVTSTLHICWGAQAG 148 (301)
T ss_dssp HHH-HHHHHHHHHHHEEEEEEETHHHHHH
T ss_pred HHH-HHHHHHHHHHcCCcEEEEcHHHHHH
Confidence 666 4567777778889999999999993
Done!