BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038651
(324 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WVA|A Chain A, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|B Chain B, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|E Chain E, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|F Chain F, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|V Chain V, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|X Chain X, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|Y Chain Y, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVA|Z Chain Z, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVG|A Chain A, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVG|B Chain B, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVG|E Chain E, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVG|F Chain F, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|A Chain A, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|B Chain B, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|E Chain E, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|F Chain F, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|V Chain V, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|X Chain X, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|Y Chain Y, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|2WVH|Z Chain Z, Structural Insights Into The Pre-Reaction State Of
Pyruvate Decarboxylase From Zymomonas Mobilis
Length = 568
Score = 125 bits (314), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 106/356 (29%), Positives = 148/356 (41%), Gaps = 126/356 (35%)
Query: 89 KPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGMIVEF----------------- 131
K A++ G KL + A A V+ ADA G A A M +AK E
Sbjct: 211 KVAVLVGSKLRAAGAEEAAVKFADALGGAVATMAAAKSFFPEENPHYIGTSWGEVSYPGV 270
Query: 132 ------ADAYIFVESIFNDYSSVGYSLLLNKKAILMQPDRIVVANGLLLPN--------- 176
ADA I + +FNDYS+ G++ + + K +++ R VV NG+ P+
Sbjct: 271 EKTMKEADAVIALAPVFNDYSTTGWTDIPDPKKLVLAEPRSVVVNGIRFPSVHLKDYLTR 330
Query: 177 ------RNTSA---YESYHRIYVPHGIPLKSNAHEPL-----------MLSGNTAVIAET 216
+ T A ++S + + P +A PL +L+ NT VIAET
Sbjct: 331 LAQKVSKKTGALDFFKSLNAGELKKAAPADPSA--PLVNAEIARQVEALLTPNTTVIAET 388
Query: 217 GDSWFNCQK-------------------------------------------------DV 227
GDSWFN Q+
Sbjct: 389 GDSWFNAQRMKLPNGARVEYEMQWGHIGWSVPAAFGYAVGAPERRNILMVGDGSFQLTAQ 448
Query: 228 DVSTMLRCEQKNIIFLINNGNYTIEVEIHDGPYNVIENWNYTGLVEAFQ----------- 276
+V+ M+R + IIFLINN YTIEV IHDGPYN I+NW+Y GL+E F
Sbjct: 449 EVAQMVRLKLPVIIFLINNYGYTIEVMIHDGPYNNIKNWDYAGLMEVFNGNGGYDSGAGK 508
Query: 277 -----------NAIETAAVEKKDCLCFIEAIVHKDDTGKELLKWGSRVSAANNRPP 321
AI+ A+ D IE + ++D +EL+KWG RV+AAN+R P
Sbjct: 509 GLKAKTGGELAEAIKV-ALANTDGPTLIECFIGREDCTEELVKWGKRVAAANSRKP 563
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 38/56 (67%)
Query: 27 RDVGCCNELNAGYAADGSARARAVGAYVVTFIVGRLSIINAIAGAYSENFPAATIT 82
V CCNELN G++A+G ARA+ A VVT+ VG LS +AI GAY+EN P I+
Sbjct: 43 EQVYCCNELNCGFSAEGYARAKGAAAAVVTYSVGALSAFDAIGGAYAENLPVILIS 98
>pdb|3OE1|A Chain A, Pyruvate Decarboxylase Variant Glu473asp From Z. Mobilis
In Complex With Reaction Intermediate 2-Lactyl-Thdp
pdb|3OE1|B Chain B, Pyruvate Decarboxylase Variant Glu473asp From Z. Mobilis
In Complex With Reaction Intermediate 2-Lactyl-Thdp
pdb|3OE1|C Chain C, Pyruvate Decarboxylase Variant Glu473asp From Z. Mobilis
In Complex With Reaction Intermediate 2-Lactyl-Thdp
pdb|3OE1|D Chain D, Pyruvate Decarboxylase Variant Glu473asp From Z. Mobilis
In Complex With Reaction Intermediate 2-Lactyl-Thdp
Length = 568
Score = 124 bits (310), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 105/356 (29%), Positives = 148/356 (41%), Gaps = 126/356 (35%)
Query: 89 KPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGMIVEF----------------- 131
K A++ G KL + A A V+ ADA G A A M +AK E
Sbjct: 211 KVAVLVGSKLRAAGAEEAAVKFADALGGAVATMAAAKSFFPEENPHYIGTSWGEVSYPGV 270
Query: 132 ------ADAYIFVESIFNDYSSVGYSLLLNKKAILMQPDRIVVANGLLLPN--------- 176
ADA I + +FNDYS+ G++ + + K +++ R VV NG+ P+
Sbjct: 271 EKTMKEADAVIALAPVFNDYSTTGWTDIPDPKKLVLAEPRSVVVNGIRFPSVHLKDYLTR 330
Query: 177 ------RNTSA---YESYHRIYVPHGIPLKSNAHEPL-----------MLSGNTAVIAET 216
+ T A ++S + + P +A PL +L+ NT VIAET
Sbjct: 331 LAQKVSKKTGALDFFKSLNAGELKKAAPADPSA--PLVNAEIARQVEALLTPNTTVIAET 388
Query: 217 GDSWFNCQK-------------------------------------------------DV 227
GDSWFN Q+
Sbjct: 389 GDSWFNAQRMKLPNGARVEYEMQWGHIGWSVPAAFGYAVGAPERRNILMVGDGSFQLTAQ 448
Query: 228 DVSTMLRCEQKNIIFLINNGNYTIEVEIHDGPYNVIENWNYTGLVEAFQ----------- 276
+V+ M+R + IIFLINN YTI+V IHDGPYN I+NW+Y GL+E F
Sbjct: 449 EVAQMVRLKLPVIIFLINNYGYTIDVMIHDGPYNNIKNWDYAGLMEVFNGNGGYDSGAGK 508
Query: 277 -----------NAIETAAVEKKDCLCFIEAIVHKDDTGKELLKWGSRVSAANNRPP 321
AI+ A+ D IE + ++D +EL+KWG RV+AAN+R P
Sbjct: 509 GLKAKTGGELAEAIKV-ALANTDGPTLIECFIGREDCTEELVKWGKRVAAANSRKP 563
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 38/56 (67%)
Query: 27 RDVGCCNELNAGYAADGSARARAVGAYVVTFIVGRLSIINAIAGAYSENFPAATIT 82
V CCNELN G++A+G ARA+ A VVT+ VG LS +AI GAY+EN P I+
Sbjct: 43 EQVYCCNELNCGFSAEGYARAKGAAAAVVTYSVGALSAFDAIGGAYAENLPVILIS 98
>pdb|1ZPD|A Chain A, Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|1ZPD|B Chain B, Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|1ZPD|E Chain E, Pyruvate Decarboxylase From Zymomonas Mobilis
pdb|1ZPD|F Chain F, Pyruvate Decarboxylase From Zymomonas Mobilis
Length = 568
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 104/356 (29%), Positives = 145/356 (40%), Gaps = 126/356 (35%)
Query: 89 KPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGMIVEF----------------- 131
K A++ G KL + A A V+ DA G A A M +AK E
Sbjct: 211 KVAVLVGSKLRAAGAEEAAVKFTDALGGAVATMAAAKSFFPEENALYIGTSWGEVSYPGV 270
Query: 132 ------ADAYIFVESIFNDYSSVGYSLLLNKKAILMQPDRIVVANGLLLPNRNTSAY--- 182
ADA I + +FNDYS+ G++ + + K +++ R VV NG+ P+ + Y
Sbjct: 271 EKTMKEADAVIALAPVFNDYSTTGWTDIPDPKKLVLAEPRSVVVNGIRFPSVHLKDYLTR 330
Query: 183 ---------------ESYHRIYVPHGIPLKSNAHEPL-----------MLSGNTAVIAET 216
+S + + P +A PL +L+ NT VIAET
Sbjct: 331 LAQKVSKKTGSLDFFKSLNAGELKKAAPADPSA--PLVNAEIARQVEALLTPNTTVIAET 388
Query: 217 GDSWFNCQK-------------------------------------------------DV 227
GDSWFN Q+
Sbjct: 389 GDSWFNAQRMKLPNGARVEYEMQWGHIGWSVPAAFGYAVGAPERRNILMVGDGSFQLTAQ 448
Query: 228 DVSTMLRCEQKNIIFLINNGNYTIEVEIHDGPYNVIENWNYTGLVEAFQ----------- 276
+V+ M+R + IIFLINN YTIEV IHDGPYN I+NW+Y GL+E F
Sbjct: 449 EVAQMVRLKLPVIIFLINNYGYTIEVMIHDGPYNNIKNWDYAGLMEVFNGNGGYDSGAAK 508
Query: 277 -----------NAIETAAVEKKDCLCFIEAIVHKDDTGKELLKWGSRVSAANNRPP 321
AI+ A+ D IE + ++D +EL+KWG RV+AAN+R P
Sbjct: 509 GLKAKTGGELAEAIKV-ALANTDGPTLIECFIGREDCTEELVKWGKRVAAANSRKP 563
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 38/56 (67%)
Query: 27 RDVGCCNELNAGYAADGSARARAVGAYVVTFIVGRLSIINAIAGAYSENFPAATIT 82
V CCNELN G++A+G ARA+ A VVT+ VG LS +AI GAY+EN P I+
Sbjct: 43 EQVYCCNELNCGFSAEGYARAKGAAAAVVTYSVGALSAFDAIGGAYAENLPVILIS 98
>pdb|2VBI|A Chain A, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|B Chain B, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|C Chain C, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|D Chain D, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|E Chain E, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|F Chain F, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|G Chain G, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
pdb|2VBI|H Chain H, Holostructure Of Pyruvate Decarboxylase From Acetobacter
Pasteurianus
Length = 566
Score = 113 bits (282), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 101/358 (28%), Positives = 141/358 (39%), Gaps = 122/358 (34%)
Query: 79 ATITALLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM----------- 127
AT+ L K+ P M+ G KL + A A LAD A +M +AKG
Sbjct: 201 ATVALLEKSASPVMLLGSKLRAANALAATETLADKLQCAVTIMAAAKGFFPEDHAGFRGL 260
Query: 128 ------------IVEFADAYIFVESIFNDYSSVGYSLL-LNKKAILMQPDRIVVA----N 170
+VE +DA + + +FNDYS+VG+S IL +PDR+ V +
Sbjct: 261 YWGEVSNPGVQELVETSDALLCIAPVFNDYSTVGWSAWPKGPNVILAEPDRVTVDGRAYD 320
Query: 171 GLLL-----------PNRNTSAYESYHRIYVPHGIPLKSNAHEP------------LMLS 207
G L P R SA +S VP L + + E +L+
Sbjct: 321 GFTLRAFLQALAEKAPARPASAQKSS----VPT-CSLTATSDEAGLTNDEIVRHINALLT 375
Query: 208 GNTAVIAETGDSWFNCQKDV---------------------------------------- 227
NT ++AETGDSWFN +
Sbjct: 376 SNTTLVAETGDSWFNAMRMTLPRGARVELEMQWGHIGWSVPSAFGNAMGSQDRQHVVMVG 435
Query: 228 ---------DVSTMLRCEQKNIIFLINNGNYTIEVEIHDGPYNVIENWNYTGLVEAF--- 275
+V+ M+R E IIFLINN Y IE+ IHDGPYN I+NW+Y GL+E F
Sbjct: 436 DGSFQLTAQEVAQMVRYELPVIIFLINNRGYVIEIAIHDGPYNYIKNWDYAGLMEVFNAG 495
Query: 276 ------------QNAIETAAVEKKDCL--CFIEAIVHKDDTGKELLKWGSRVSAANNR 319
+ E A K + IE + + D L++WG +V++ N R
Sbjct: 496 EGHGLGLKATTPKELTEAIARAKANTRGPTLIECQIDRTDCTDMLVQWGRKVASTNAR 553
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 39/56 (69%)
Query: 27 RDVGCCNELNAGYAADGSARARAVGAYVVTFIVGRLSIINAIAGAYSENFPAATIT 82
+ + CCNELN G++A+G AR+ A VVTF VG +S +NA+ GAY+EN P I+
Sbjct: 43 KQIYCCNELNCGFSAEGYARSNGAAAAVVTFSVGAISAMNALGGAYAENLPVILIS 98
>pdb|1OVM|A Chain A, Crystal Structure Of Indolepyruvate Decarboxylase From
Enterobacter Cloacae
pdb|1OVM|B Chain B, Crystal Structure Of Indolepyruvate Decarboxylase From
Enterobacter Cloacae
pdb|1OVM|C Chain C, Crystal Structure Of Indolepyruvate Decarboxylase From
Enterobacter Cloacae
pdb|1OVM|D Chain D, Crystal Structure Of Indolepyruvate Decarboxylase From
Enterobacter Cloacae
Length = 552
Score = 69.7 bits (169), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/66 (53%), Positives = 42/66 (63%)
Query: 16 LLDHLIAEPGSRDVGCCNELNAGYAADGSARARAVGAYVVTFIVGRLSIINAIAGAYSEN 75
LDH+I P VGC NELNA YAADG AR + A + TF VG LS +N IAG+Y+E+
Sbjct: 34 FLDHVIDSPDICWVGCANELNASYAADGYARCKGFAALLTTFGVGELSAMNGIAGSYAEH 93
Query: 76 FPAATI 81
P I
Sbjct: 94 VPVLHI 99
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 3/69 (4%)
Query: 209 NTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIH--DGPYNVIENW 266
N VI TGD ++ +MLR +Q II ++NN YT+E IH + YN I W
Sbjct: 426 NRRVIVLTGDGAAQLTIQ-ELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRYNDIALW 484
Query: 267 NYTGLVEAF 275
N+T + +A
Sbjct: 485 NWTHIPQAL 493
>pdb|2VBF|A Chain A, The Holostructure Of The Branched-Chain Keto Acid
Decarboxylase (Kdca) From Lactococcus Lactis
pdb|2VBF|B Chain B, The Holostructure Of The Branched-Chain Keto Acid
Decarboxylase (Kdca) From Lactococcus Lactis
pdb|2VBG|A Chain A, The Complex Structure Of The Branched-Chain Keto Acid
Decarboxylase (Kdca) From Lactococcus Lactis With 2r-1-
Hydroxyethyl-Deazathdp
pdb|2VBG|B Chain B, The Complex Structure Of The Branched-Chain Keto Acid
Decarboxylase (Kdca) From Lactococcus Lactis With 2r-1-
Hydroxyethyl-Deazathdp
Length = 570
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 41/66 (62%)
Query: 16 LLDHLIAEPGSRDVGCCNELNAGYAADGSARARAVGAYVVTFIVGRLSIINAIAGAYSEN 75
LD +I+ + +G NELNA Y ADG AR + A++ TF VG LS IN +AG+Y+EN
Sbjct: 54 FLDQIISREDMKWIGNANELNASYMADGYARTKKAAAFLTTFGVGELSAINGLAGSYAEN 113
Query: 76 FPAATI 81
P I
Sbjct: 114 LPVVEI 119
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 49/106 (46%), Gaps = 23/106 (21%)
Query: 233 LRCEQKNIIFLINNGNYTIEVEIHDGP---YNVIENWNYTGLVEAFQNAIETAAVEK--- 286
+R + I F+INN YT+E EIH GP YN I WNY+ L E F A E V K
Sbjct: 466 IREKLNPICFIINNDGYTVEREIH-GPTQSYNDIPMWNYSKLPETF-GATEDRVVSKIVR 523
Query: 287 ---------KDC------LCFIEAIVHKDDTGKELLKWGSRVSAAN 317
K+ + +IE ++ K+D K L K G + N
Sbjct: 524 TENEFVSVMKEAQADVNRMYWIELVLEKEDAPKLLKKMGKLFAEQN 569
>pdb|2VJY|A Chain A, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VJY|B Chain B, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VJY|C Chain C, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VJY|D Chain D, Pyruvate Decarboxylase From Kluyveromyces Lactis In
Complex With The Substrate Analogue Methyl
Acetylphosphonate
pdb|2VK4|A Chain A, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
pdb|2VK4|B Chain B, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
pdb|2VK4|C Chain C, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
pdb|2VK4|D Chain D, Crystal Structure Of Pyruvate Decarboxylase From
Kluyveromyces Lactis
Length = 563
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 39/59 (66%)
Query: 16 LLDHLIAEPGSRDVGCCNELNAGYAADGSARARAVGAYVVTFIVGRLSIINAIAGAYSE 74
LLD++ PG R G NELNA YAADG AR + + + TF VG LS +N IAG+Y+E
Sbjct: 33 LLDNIYEVPGMRWAGNANELNAAYAADGYARLKGMSCIITTFGVGELSALNGIAGSYAE 91
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 228 DVSTMLRCEQKNIIFLINNGNYTIEVEIH--DGPYNVIENWNYTGLVEAF 275
++STM+R K +F++NN YTIE IH YN I+NW + L+ F
Sbjct: 453 EISTMIRWGLKPYLFVLNNDGYTIERLIHGETAQYNCIQNWQHLELLPTF 502
>pdb|2W93|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Pyruvate Decarboxylase Variant E477q In Complex With
The Surrogate Pyruvamide
pdb|2W93|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Pyruvate Decarboxylase Variant E477q In Complex With
The Surrogate Pyruvamide
pdb|2W93|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Pyruvate Decarboxylase Variant E477q In Complex With
The Surrogate Pyruvamide
pdb|2W93|D Chain D, Crystal Structure Of The Saccharomyces Cerevisiae
Pyruvate Decarboxylase Variant E477q In Complex With
The Surrogate Pyruvamide
Length = 563
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 37/59 (62%)
Query: 16 LLDHLIAEPGSRDVGCCNELNAGYAADGSARARAVGAYVVTFIVGRLSIINAIAGAYSE 74
LLD + G R G NELNA YAADG AR + + + TF VG LS +N IAG+Y+E
Sbjct: 33 LLDKIYEVEGMRWAGNANELNAAYAADGYARIKGMSCIITTFGVGELSALNGIAGSYAE 91
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Query: 228 DVSTMLRCEQKNIIFLINNGNYTIEVEIHDGP---YNVIENWNYTGLVEAF 275
++STM+R K +F++NN YTI+ IH GP YN I+ W++ L+ F
Sbjct: 453 EISTMIRWGLKPYLFVLNNDGYTIQKLIH-GPKAQYNEIQGWDHLSLLPTF 502
>pdb|2VK8|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Pyruvate Decarboxylase Variant E477q In Complex With
Its Substrate
pdb|2VK8|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Pyruvate Decarboxylase Variant E477q In Complex With
Its Substrate
pdb|2VK8|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Pyruvate Decarboxylase Variant E477q In Complex With
Its Substrate
pdb|2VK8|D Chain D, Crystal Structure Of The Saccharomyces Cerevisiae
Pyruvate Decarboxylase Variant E477q In Complex With
Its Substrate
Length = 563
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 37/59 (62%)
Query: 16 LLDHLIAEPGSRDVGCCNELNAGYAADGSARARAVGAYVVTFIVGRLSIINAIAGAYSE 74
LLD + G R G NELNA YAADG AR + + + TF VG LS +N IAG+Y+E
Sbjct: 33 LLDKIYEVEGMRWAGNANELNAAYAADGYARIKGMSCIITTFGVGELSALNGIAGSYAE 91
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Query: 228 DVSTMLRCEQKNIIFLINNGNYTIEVEIHDGP---YNVIENWNYTGLVEAF 275
++STM+R K +F++NN YTI+ IH GP YN I+ W++ L+ F
Sbjct: 453 EISTMIRWGLKPYLFVLNNDGYTIQKLIH-GPKAQYNEIQGWDHLSLLPTF 502
>pdb|1QPB|A Chain A, Pyruvate Decarboyxlase From Yeast (Form B) Complexed
With Pyruvamide
pdb|1QPB|B Chain B, Pyruvate Decarboyxlase From Yeast (Form B) Complexed
With Pyruvamide
Length = 563
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 37/59 (62%)
Query: 16 LLDHLIAEPGSRDVGCCNELNAGYAADGSARARAVGAYVVTFIVGRLSIINAIAGAYSE 74
LLD + G R G NELNA YAADG AR + + + TF VG LS +N IAG+Y+E
Sbjct: 33 LLDKIYEVEGMRWAGNANELNAAYAADGYARIKGMSCIITTFGVGELSALNGIAGSYAE 91
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Query: 228 DVSTMLRCEQKNIIFLINNGNYTIEVEIHDGP---YNVIENWNYTGLVEAF 275
++STM+R K +F++NN YTIE IH GP YN I+ W++ L+ F
Sbjct: 453 EISTMIRWGLKPYLFVLNNDGYTIEKLIH-GPKAQYNEIQGWDHLSLLPTF 502
>pdb|1PVD|A Chain A, Crystal Structure Of The Thiamin Diphosphate Dependent
Enzyme Pyruvate Decarboxylase From The Yeast
Saccharomyces Cerevisiae At 2.3 Angstroms Resolution
pdb|1PVD|B Chain B, Crystal Structure Of The Thiamin Diphosphate Dependent
Enzyme Pyruvate Decarboxylase From The Yeast
Saccharomyces Cerevisiae At 2.3 Angstroms Resolution
Length = 555
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 37/59 (62%)
Query: 16 LLDHLIAEPGSRDVGCCNELNAGYAADGSARARAVGAYVVTFIVGRLSIINAIAGAYSE 74
LLD + G R G NELNA YAADG AR + + + TF VG LS +N IAG+Y+E
Sbjct: 32 LLDKIYEVEGMRWAGNANELNAAYAADGYARIKGMSCIITTFGVGELSALNGIAGSYAE 90
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Query: 228 DVSTMLRCEQKNIIFLINNGNYTIEVEIHDGP---YNVIENWNYTGLVEAF 275
++STM+R K +F++NN YTIE IH GP YN I+ W++ L+ F
Sbjct: 452 EISTMIRWGLKPYLFVLNNDGYTIEKLIH-GPKAQYNEIQGWDHLSLLPTF 501
>pdb|1PYD|A Chain A, Catalytic Centers In The Thiamin Diphosphate Dependent
Enzyme Pyruvate Decarboxylase At 2.4 Angstroms
Resolution
pdb|1PYD|B Chain B, Catalytic Centers In The Thiamin Diphosphate Dependent
Enzyme Pyruvate Decarboxylase At 2.4 Angstroms
Resolution
Length = 556
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 37/59 (62%)
Query: 16 LLDHLIAEPGSRDVGCCNELNAGYAADGSARARAVGAYVVTFIVGRLSIINAIAGAYSE 74
LLD + G R G NELNA YAADG AR + + + TF VG LS +N IAG+Y+E
Sbjct: 33 LLDKIYEVEGMRWAGNANELNAAYAADGYARIKGMSCIITTFGVGELSALNGIAGSYAE 91
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Query: 228 DVSTMLRCEQKNIIFLINNGNYTIEVEIHDGP---YNVIENWNYTGLVEAF 275
++STM+R K +F++NN YTIE IH GP YN I+ W++ L+ F
Sbjct: 453 EISTMIRWGLKPYLFVLNNDGYTIEKLIH-GPKAQYNEIQGWDHLSLLPTF 502
>pdb|2VK1|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae
Pyruvate Decarboxylase Variant D28a In Complex With Its
Substrate
pdb|2VK1|B Chain B, Crystal Structure Of The Saccharomyces Cerevisiae
Pyruvate Decarboxylase Variant D28a In Complex With Its
Substrate
pdb|2VK1|C Chain C, Crystal Structure Of The Saccharomyces Cerevisiae
Pyruvate Decarboxylase Variant D28a In Complex With Its
Substrate
pdb|2VK1|D Chain D, Crystal Structure Of The Saccharomyces Cerevisiae
Pyruvate Decarboxylase Variant D28a In Complex With Its
Substrate
Length = 563
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 37/59 (62%)
Query: 16 LLDHLIAEPGSRDVGCCNELNAGYAADGSARARAVGAYVVTFIVGRLSIINAIAGAYSE 74
LLD + G R G NELNA YAADG AR + + + TF VG LS +N IAG+Y+E
Sbjct: 33 LLDKIYEVEGMRWAGNANELNAAYAADGYARIKGMSCIITTFGVGELSALNGIAGSYAE 91
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 4/51 (7%)
Query: 228 DVSTMLRCEQKNIIFLINNGNYTIEVEIHDGP---YNVIENWNYTGLVEAF 275
++STM+R K +F++NN YTIE IH GP YN I+ W++ L+ F
Sbjct: 453 EISTMIRWGLKPYLFVLNNDGYTIEKLIH-GPKAQYNEIQGWDHLSLLPTF 502
>pdb|1CPY|A Chain A, Site-Directed Mutagenesis On (Serine) Carboxypeptidase Y
From Yeast. The Significance Of Thr 60 And Met 398 In
Hydrolysis And Aminolysis Reactions
Length = 421
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 29/133 (21%), Positives = 52/133 (39%), Gaps = 28/133 (21%)
Query: 79 ATITALLKAVKPAMIG-------GPKLSVSKATIAFVELADACGYAFAVMPSAKGMIVEF 131
+++T L A+ P+ IG P S AT+ F++ G++++ +
Sbjct: 57 SSLTGLFFALGPSSIGPDLKPIGNPYSWNSNATVIFLDQPVNVGFSYSGSSGVSNTVAAG 116
Query: 132 ADAYIFVESIFNDY---------------SSVGYSLLLNKKAILMQPDR------IVVAN 170
D Y F+E F+ + S G+ + + IL DR +++ N
Sbjct: 117 KDVYNFLELFFDQFPEYVNKGQDFHIAGASYAGHYIPVFASEILSHKDRNFNLTSVLIGN 176
Query: 171 GLLLPNRNTSAYE 183
GL P + YE
Sbjct: 177 GLTDPLTQYNYYE 189
>pdb|3O0D|A Chain A, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|B Chain B, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|C Chain C, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|D Chain D, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|E Chain E, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|F Chain F, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
pdb|3O0D|G Chain G, Crystal Structure Of Lip2 Lipase From Yarrowia Lipolytica
At 1.7 A Resolution
Length = 301
Score = 31.6 bits (70), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 52/127 (40%), Gaps = 20/127 (15%)
Query: 137 FVESIFNDYSSVGYSLLLNKKAILMQPDRIVVANGLLLPNRNTSAYESYHRIYVPHGIPL 196
F++S N Y+ +G L I PD + G L + GI L
Sbjct: 129 FIQSYNNTYNQIGPKL---DSVIEQYPDYQIAVTGHSLGGAAALLF----------GINL 175
Query: 197 KSNAHEPLMLSGNTAVIAETG-----DSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTI 251
K N H+PL+++ ++ G D F Q++ DVS + + + + + + G+
Sbjct: 176 KVNGHDPLVVTLGQPIVGNAGFANWVDKLFFGQENPDVSKVSK--DRKLYRITHRGDIVP 233
Query: 252 EVEIHDG 258
+V DG
Sbjct: 234 QVPFWDG 240
>pdb|2NXW|A Chain A, Crystal Structure Of Phenylpyruvate Decarboxylase Of
Azospirillum Brasilense
pdb|2NXW|B Chain B, Crystal Structure Of Phenylpyruvate Decarboxylase Of
Azospirillum Brasilense
pdb|2Q5J|A Chain A, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp
pdb|2Q5J|B Chain B, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp
pdb|2Q5L|A Chain A, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 2-(1- Hydroxyethyl)-3-Deaza-Thdp
pdb|2Q5L|B Chain B, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 2-(1- Hydroxyethyl)-3-Deaza-Thdp
pdb|2Q5O|A Chain A, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp And Phenylpyruvate
pdb|2Q5O|B Chain B, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp And Phenylpyruvate
pdb|2Q5Q|A Chain A, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp And 5-Phenyl-2-Oxo-Valeric Acid
pdb|2Q5Q|B Chain B, X-Ray Structure Of Phenylpyruvate Decarboxylase In Complex
With 3- Deaza-Thdp And 5-Phenyl-2-Oxo-Valeric Acid
Length = 565
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 50 VGAYVVTFIVGRLSIINAIAGAYSENFPAATIT 82
+G VT+ G +++NA+AGAY+E P I+
Sbjct: 85 LGVAAVTYGAGAFNMVNAVAGAYAEKSPVVVIS 117
>pdb|1WPX|A Chain A, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
pdb|1YSC|A Chain A, 2.8 Angstroms Structure Of Yeast Serine Carboxypeptidase
Length = 421
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 51/133 (38%), Gaps = 28/133 (21%)
Query: 79 ATITALLKAVKPAMIG-------GPKLSVSKATIAFVELADACGYAFAVMPSAKGMIVEF 131
+++T L + P+ IG P S AT+ F++ G++++ +
Sbjct: 57 SSLTGLFFELGPSSIGPDLKPIGNPYSWNSNATVIFLDQPVNVGFSYSGSSGVSNTVAAG 116
Query: 132 ADAYIFVESIFNDY---------------SSVGYSLLLNKKAILMQPDR------IVVAN 170
D Y F+E F+ + S G+ + + IL DR +++ N
Sbjct: 117 KDVYNFLELFFDQFPEYVNKGQDFHIAGESYAGHYIPVFASEILSHKDRNFNLTSVLIGN 176
Query: 171 GLLLPNRNTSAYE 183
GL P + YE
Sbjct: 177 GLTDPLTQYNYYE 189
>pdb|1BEV|1 Chain 1, Bovine Enterovirus Vg-5-27
Length = 281
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 167 VVANGLLLPNRNTSAYESYHRIYVPHGIPLKSNAHEPLMLSG-NTAVIAET 216
++A N T + +Y +YVP G P+ SN SG N +V A+T
Sbjct: 123 IIATSSTGQNVTTEQHTTYQVMYVPPGAPVPSNQDSFQWQSGCNPSVFADT 173
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,061,128
Number of Sequences: 62578
Number of extensions: 350347
Number of successful extensions: 794
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 752
Number of HSP's gapped (non-prelim): 48
length of query: 324
length of database: 14,973,337
effective HSP length: 99
effective length of query: 225
effective length of database: 8,778,115
effective search space: 1975075875
effective search space used: 1975075875
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)