Query 038651
Match_columns 324
No_of_seqs 221 out of 1176
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 13:14:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038651.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038651hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0028 IlvB Thiamine pyrophos 100.0 1.3E-63 2.7E-68 502.1 24.4 288 7-300 21-533 (550)
2 COG3961 Pyruvate decarboxylase 100.0 1.6E-61 3.5E-66 465.9 22.7 311 7-319 23-556 (557)
3 PLN02573 pyruvate decarboxylas 100.0 1.1E-60 2.3E-65 485.9 29.5 317 7-324 35-578 (578)
4 TIGR03393 indolpyr_decarb indo 100.0 4.5E-59 9.6E-64 471.0 25.8 299 7-309 20-538 (539)
5 TIGR01504 glyox_carbo_lig glyo 100.0 6.8E-59 1.5E-63 473.7 25.8 295 8-305 23-562 (588)
6 TIGR03394 indol_phenyl_DC indo 100.0 4.7E-58 1E-62 462.8 26.3 301 7-311 19-534 (535)
7 PRK08979 acetolactate synthase 100.0 8.7E-58 1.9E-62 464.5 25.5 294 7-304 23-552 (572)
8 PRK07979 acetolactate synthase 100.0 1.2E-57 2.6E-62 463.7 24.6 294 7-304 23-554 (574)
9 TIGR02418 acolac_catab acetola 100.0 2.6E-57 5.7E-62 458.1 25.9 295 7-306 18-538 (539)
10 PRK09107 acetolactate synthase 100.0 5.8E-57 1.3E-61 460.1 26.2 292 7-302 30-558 (595)
11 PRK07282 acetolactate synthase 100.0 6.2E-57 1.3E-61 457.7 25.5 295 7-303 29-546 (566)
12 PRK06965 acetolactate synthase 100.0 5.1E-57 1.1E-61 460.0 24.2 296 7-305 40-569 (587)
13 PRK11269 glyoxylate carboligas 100.0 1.2E-56 2.7E-61 457.6 25.6 294 7-303 23-561 (591)
14 PRK08617 acetolactate synthase 100.0 2.6E-56 5.7E-61 452.0 26.0 297 7-308 24-546 (552)
15 PRK06725 acetolactate synthase 100.0 2.6E-56 5.6E-61 453.3 25.8 293 7-304 34-551 (570)
16 PRK06466 acetolactate synthase 100.0 2.7E-56 5.9E-61 453.8 25.7 293 7-303 23-553 (574)
17 PRK08322 acetolactate synthase 100.0 3.8E-56 8.2E-61 450.3 26.5 297 7-308 20-538 (547)
18 PRK06456 acetolactate synthase 100.0 2E-56 4.2E-61 454.7 24.3 294 7-305 21-552 (572)
19 PRK08527 acetolactate synthase 100.0 4.2E-56 9.1E-61 451.4 25.9 293 7-304 22-544 (563)
20 PRK07418 acetolactate synthase 100.0 4.8E-56 1E-60 455.2 26.1 293 7-303 38-564 (616)
21 PRK08978 acetolactate synthase 100.0 5.3E-56 1.2E-60 449.4 26.1 294 7-305 20-532 (548)
22 KOG1184 Thiamine pyrophosphate 100.0 2.3E-56 5E-61 428.7 22.0 312 7-319 23-560 (561)
23 PRK06048 acetolactate synthase 100.0 5.6E-56 1.2E-60 450.3 25.3 292 7-303 27-543 (561)
24 PRK05858 hypothetical protein; 100.0 9.6E-56 2.1E-60 447.0 24.8 294 7-306 24-538 (542)
25 TIGR03457 sulphoacet_xsc sulfo 100.0 2.8E-55 6E-60 446.8 27.9 298 7-307 21-566 (579)
26 PLN02470 acetolactate synthase 100.0 1.3E-55 2.8E-60 449.7 24.6 292 7-304 32-563 (585)
27 PRK08155 acetolactate synthase 100.0 9.6E-56 2.1E-60 448.9 23.4 294 7-304 32-549 (564)
28 PRK07789 acetolactate synthase 100.0 3.5E-55 7.6E-60 448.5 27.6 292 7-302 50-580 (612)
29 CHL00099 ilvB acetohydroxyacid 100.0 1.6E-55 3.5E-60 448.9 23.4 293 7-303 29-560 (585)
30 TIGR03254 oxalate_oxc oxalyl-C 100.0 4.9E-55 1.1E-59 442.9 25.7 293 7-305 22-545 (554)
31 PRK08199 thiamine pyrophosphat 100.0 3.7E-55 8.1E-60 444.0 24.0 294 7-304 27-544 (557)
32 PRK07710 acetolactate synthase 100.0 4.8E-55 1E-59 444.4 23.9 293 7-304 35-554 (571)
33 PRK07064 hypothetical protein; 100.0 7.5E-55 1.6E-59 440.6 23.5 288 8-301 23-531 (544)
34 PRK08273 thiamine pyrophosphat 100.0 1.4E-54 3E-59 443.0 25.1 286 7-301 22-549 (597)
35 PRK12474 hypothetical protein; 100.0 3.3E-54 7.1E-59 433.6 26.0 282 7-297 24-518 (518)
36 TIGR00118 acolac_lg acetolacta 100.0 2.6E-54 5.7E-59 437.9 25.1 294 7-304 20-542 (558)
37 PRK06457 pyruvate dehydrogenas 100.0 1.5E-54 3.2E-59 438.9 23.0 285 7-303 21-524 (549)
38 PRK06882 acetolactate synthase 100.0 4.1E-54 9E-59 437.8 26.0 295 7-304 23-552 (574)
39 PRK09124 pyruvate dehydrogenas 100.0 4.6E-54 1E-58 437.4 26.4 286 7-303 22-535 (574)
40 PRK06276 acetolactate synthase 100.0 4.3E-54 9.3E-59 438.6 26.1 293 7-304 20-549 (586)
41 TIGR02720 pyruv_oxi_spxB pyruv 100.0 4.3E-54 9.3E-59 437.6 25.7 291 7-304 18-538 (575)
42 PRK06154 hypothetical protein; 100.0 3.7E-54 8.1E-59 437.1 24.9 281 13-301 43-558 (565)
43 PRK08611 pyruvate oxidase; Pro 100.0 5.5E-54 1.2E-58 436.9 25.5 286 7-303 23-535 (576)
44 PRK07524 hypothetical protein; 100.0 6.4E-54 1.4E-58 433.1 24.3 286 7-299 21-530 (535)
45 PRK07586 hypothetical protein; 100.0 1.8E-53 4E-58 427.8 27.0 282 7-297 20-514 (514)
46 PRK09259 putative oxalyl-CoA d 100.0 1.4E-53 3.1E-58 433.5 25.8 293 7-305 29-553 (569)
47 PRK07525 sulfoacetaldehyde ace 100.0 1.1E-53 2.3E-58 435.8 23.9 297 7-307 25-571 (588)
48 PRK06546 pyruvate dehydrogenas 100.0 7.3E-53 1.6E-57 428.7 26.6 284 7-301 22-533 (578)
49 KOG4166 Thiamine pyrophosphate 100.0 1.1E-53 2.4E-58 401.5 16.2 293 7-303 110-652 (675)
50 PRK08266 hypothetical protein; 100.0 1.1E-52 2.4E-57 424.6 24.4 288 7-302 23-529 (542)
51 PRK08327 acetolactate synthase 100.0 6.1E-53 1.3E-57 428.7 22.4 288 7-299 26-568 (569)
52 PRK06112 acetolactate synthase 100.0 1.8E-52 3.9E-57 426.1 24.7 289 16-310 41-572 (578)
53 PRK07092 benzoylformate decarb 100.0 8.2E-52 1.8E-56 417.3 27.5 286 7-298 31-530 (530)
54 PRK07449 2-succinyl-5-enolpyru 100.0 2.7E-52 5.8E-57 424.0 20.5 301 7-314 28-565 (568)
55 KOG1185 Thiamine pyrophosphate 100.0 4E-49 8.8E-54 376.1 20.5 291 9-303 35-565 (571)
56 PLN02980 2-oxoglutarate decarb 100.0 2.1E-43 4.5E-48 392.4 20.2 303 8-314 321-905 (1655)
57 COG3962 Acetolactate synthase 100.0 4.8E-42 1E-46 325.9 20.8 294 13-309 43-586 (617)
58 COG3960 Glyoxylate carboligase 100.0 2.5E-41 5.5E-46 310.9 11.4 293 7-301 23-559 (592)
59 TIGR00173 menD 2-succinyl-5-en 100.0 2.6E-38 5.6E-43 311.7 14.3 161 7-169 19-312 (432)
60 cd07037 TPP_PYR_MenD Pyrimidin 99.9 2E-23 4.2E-28 179.6 7.2 77 7-83 16-94 (162)
61 cd07039 TPP_PYR_POX Pyrimidine 99.9 1E-22 2.2E-27 175.7 7.5 77 7-83 19-97 (164)
62 cd07038 TPP_PYR_PDC_IPDC_like 99.9 2.5E-22 5.5E-27 172.9 7.3 77 7-83 16-93 (162)
63 PF02776 TPP_enzyme_N: Thiamin 99.8 1.6E-20 3.5E-25 163.0 5.3 77 7-83 20-98 (172)
64 TIGR03297 Ppyr-DeCO2ase phosph 99.8 5E-18 1.1E-22 163.4 19.9 269 7-301 6-339 (361)
65 cd02013 TPP_Xsc_like Thiamine 99.8 3.4E-19 7.5E-24 158.0 9.0 100 205-307 67-188 (196)
66 cd02006 TPP_Gcl Thiamine pyrop 99.8 6.7E-19 1.4E-23 156.8 8.0 97 205-303 71-199 (202)
67 COG1165 MenD 2-succinyl-6-hydr 99.8 2.9E-17 6.2E-22 161.3 19.5 302 7-314 27-562 (566)
68 cd02010 TPP_ALS Thiamine pyrop 99.8 2.2E-18 4.7E-23 150.5 10.2 96 205-303 62-175 (177)
69 cd07034 TPP_PYR_PFOR_IOR-alpha 99.7 1.8E-18 4E-23 148.1 6.6 76 7-83 18-98 (160)
70 cd07035 TPP_PYR_POX_like Pyrim 99.7 5.4E-18 1.2E-22 144.3 7.3 76 7-83 16-93 (155)
71 PF00205 TPP_enzyme_M: Thiamin 99.7 3.9E-18 8.4E-23 142.5 6.3 86 84-169 8-117 (137)
72 cd02005 TPP_PDC_IPDC Thiamine 99.7 1.2E-17 2.6E-22 146.6 8.9 99 205-306 64-182 (183)
73 cd02003 TPP_IolD Thiamine pyro 99.7 9.4E-18 2E-22 149.8 8.3 101 205-308 62-194 (205)
74 cd02015 TPP_AHAS Thiamine pyro 99.7 3.9E-17 8.4E-22 143.6 9.4 97 205-304 64-180 (186)
75 cd02014 TPP_POX Thiamine pyrop 99.7 1.3E-16 2.9E-21 139.2 9.8 96 205-303 65-178 (178)
76 cd02009 TPP_SHCHC_synthase Thi 99.7 5.1E-17 1.1E-21 141.5 6.6 87 209-298 68-175 (175)
77 cd02004 TPP_BZL_OCoD_HPCL Thia 99.7 2.3E-16 5E-21 136.8 8.3 91 205-298 62-172 (172)
78 PRK06163 hypothetical protein; 99.7 2E-16 4.4E-21 140.8 7.9 92 205-302 71-177 (202)
79 PF02775 TPP_enzyme_C: Thiamin 99.6 3.4E-16 7.4E-21 133.1 7.1 88 205-295 42-153 (153)
80 cd06586 TPP_enzyme_PYR Pyrimid 99.6 6.9E-16 1.5E-20 130.6 7.8 77 7-83 16-93 (154)
81 cd03375 TPP_OGFOR Thiamine pyr 99.6 3.2E-15 6.9E-20 132.3 8.7 91 206-299 66-185 (193)
82 TIGR03845 sulfopyru_alph sulfo 99.6 1.5E-15 3.2E-20 130.1 5.7 72 7-83 17-92 (157)
83 TIGR03846 sulfopy_beta sulfopy 99.6 7.9E-15 1.7E-19 128.5 9.3 87 209-302 59-160 (181)
84 cd02002 TPP_BFDC Thiamine pyro 99.6 6.5E-15 1.4E-19 128.2 7.9 90 205-297 63-178 (178)
85 cd02001 TPP_ComE_PpyrDC Thiami 99.5 1.3E-14 2.7E-19 124.4 8.1 84 210-300 60-157 (157)
86 cd03371 TPP_PpyrDC Thiamine py 99.5 2.2E-14 4.7E-19 126.5 9.1 92 205-303 62-168 (188)
87 cd02008 TPP_IOR_alpha Thiamine 99.5 1.3E-14 2.8E-19 126.7 7.6 91 205-297 65-176 (178)
88 cd03376 TPP_PFOR_porB_like Thi 99.5 2.9E-14 6.3E-19 129.9 9.1 90 207-299 78-201 (235)
89 PRK09628 oorB 2-oxoglutarate-a 99.5 5.5E-14 1.2E-18 130.7 10.1 94 205-300 82-203 (277)
90 cd02018 TPP_PFOR Thiamine pyro 99.5 3.4E-14 7.4E-19 129.6 8.4 92 207-300 85-205 (237)
91 PRK05778 2-oxoglutarate ferred 99.5 9.8E-14 2.1E-18 130.4 7.8 92 205-298 84-203 (301)
92 cd00568 TPP_enzymes Thiamine p 99.5 1.4E-13 3.1E-18 118.0 8.2 90 205-297 60-168 (168)
93 PRK11869 2-oxoacid ferredoxin 99.5 1.1E-13 2.4E-18 128.6 8.0 92 205-298 74-193 (280)
94 cd03372 TPP_ComE Thiamine pyro 99.4 8.9E-13 1.9E-17 115.3 9.2 90 210-303 60-160 (179)
95 PRK11867 2-oxoglutarate ferred 99.4 9.2E-13 2E-17 123.2 7.9 91 206-299 84-203 (286)
96 PRK11866 2-oxoacid ferredoxin 99.3 3.1E-12 6.8E-17 119.0 8.5 89 207-298 75-192 (279)
97 TIGR02177 PorB_KorB 2-oxoacid: 99.3 4E-12 8.7E-17 118.6 6.3 90 206-298 68-186 (287)
98 TIGR03336 IOR_alpha indolepyru 99.3 5.5E-12 1.2E-16 129.4 7.8 93 205-299 417-531 (595)
99 TIGR00315 cdhB CO dehydrogenas 99.2 3E-11 6.4E-16 103.5 7.0 67 76-142 16-111 (162)
100 PRK00945 acetyl-CoA decarbonyl 99.1 1.4E-10 3.1E-15 100.0 6.9 68 76-143 23-120 (171)
101 cd02000 TPP_E1_PDC_ADC_BCADC T 99.0 5.7E-10 1.2E-14 105.0 7.1 88 207-299 124-229 (293)
102 TIGR03181 PDH_E1_alph_x pyruva 98.9 2.2E-09 4.7E-14 103.1 7.0 87 206-299 141-247 (341)
103 TIGR03182 PDH_E1_alph_y pyruva 98.9 4E-09 8.7E-14 100.2 6.7 87 208-299 131-235 (315)
104 cd02012 TPP_TK Thiamine pyroph 98.8 1.3E-08 2.7E-13 94.0 7.7 89 207-301 125-230 (255)
105 CHL00149 odpA pyruvate dehydro 98.8 1.3E-08 2.9E-13 97.6 8.1 83 208-298 156-259 (341)
106 PRK05899 transketolase; Review 98.5 1.6E-07 3.5E-12 97.2 8.0 84 209-299 150-249 (624)
107 PLN02374 pyruvate dehydrogenas 98.5 2.6E-07 5.5E-12 91.2 7.2 83 208-298 222-325 (433)
108 PRK11865 pyruvate ferredoxin o 97.9 3.9E-05 8.5E-10 72.2 8.8 89 208-298 90-211 (299)
109 PRK05444 1-deoxy-D-xylulose-5- 97.9 2.1E-05 4.5E-10 80.9 6.9 88 208-300 139-244 (580)
110 PRK11864 2-ketoisovalerate fer 97.8 5.3E-05 1.2E-09 71.3 7.7 88 209-298 92-207 (300)
111 cd02007 TPP_DXS Thiamine pyrop 97.8 6.1E-05 1.3E-09 66.8 7.5 84 208-299 96-191 (195)
112 COG1880 CdhB CO dehydrogenase/ 97.8 3.4E-05 7.4E-10 64.9 5.4 60 83-142 31-119 (170)
113 COG1013 PorB Pyruvate:ferredox 97.1 0.0016 3.5E-08 61.3 8.1 89 208-298 87-204 (294)
114 PF01855 POR_N: Pyruvate flavo 97.0 0.0016 3.6E-08 59.2 6.4 117 8-125 13-155 (230)
115 cd03377 TPP_PFOR_PNO Thiamine 97.0 0.0026 5.7E-08 61.2 7.8 87 210-298 152-267 (365)
116 PF00676 E1_dh: Dehydrogenase 96.9 0.00053 1.1E-08 64.9 2.8 88 208-298 122-225 (300)
117 PF02552 CO_dh: CO dehydrogena 96.5 0.0033 7.1E-08 54.3 4.4 60 83-142 30-115 (167)
118 PLN02269 Pyruvate dehydrogenas 96.4 0.011 2.4E-07 57.4 8.1 87 208-298 159-259 (362)
119 PRK07119 2-ketoisovalerate fer 96.4 0.013 2.8E-07 56.7 8.5 118 7-125 26-172 (352)
120 TIGR03710 OAFO_sf 2-oxoacid:ac 96.3 0.01 2.2E-07 61.0 7.0 118 7-125 215-361 (562)
121 PRK12571 1-deoxy-D-xylulose-5- 96.2 0.0092 2E-07 62.2 6.2 45 205-251 137-183 (641)
122 PRK08659 2-oxoglutarate ferred 96.1 0.024 5.2E-07 55.3 8.3 118 7-125 26-172 (376)
123 PRK12315 1-deoxy-D-xylulose-5- 96.1 0.017 3.6E-07 59.6 7.6 91 207-300 133-245 (581)
124 PRK09627 oorA 2-oxoglutarate-a 96.0 0.031 6.7E-07 54.6 8.4 117 7-124 25-170 (375)
125 PRK08366 vorA 2-ketoisovalerat 95.9 0.043 9.3E-07 53.8 9.0 116 7-124 25-166 (390)
126 COG1071 AcoA Pyruvate/2-oxoglu 95.8 0.055 1.2E-06 52.2 9.2 90 206-298 155-261 (358)
127 PLN02790 transketolase 95.6 0.045 9.8E-07 57.3 8.3 85 209-298 137-238 (654)
128 cd02016 TPP_E1_OGDC_like Thiam 95.5 0.031 6.7E-07 51.9 5.9 89 209-299 140-247 (265)
129 PRK12753 transketolase; Review 95.1 0.074 1.6E-06 55.7 8.1 86 209-299 146-247 (663)
130 TIGR03336 IOR_alpha indolepyru 95.0 0.074 1.6E-06 55.0 7.8 117 7-124 24-163 (595)
131 TIGR00232 tktlase_bact transke 94.9 0.081 1.8E-06 55.4 7.8 83 209-298 142-242 (653)
132 PRK12754 transketolase; Review 94.8 0.11 2.4E-06 54.4 8.5 84 209-298 146-246 (663)
133 PTZ00089 transketolase; Provis 94.8 0.13 2.8E-06 54.0 8.9 85 209-298 148-249 (661)
134 PRK09622 porA pyruvate flavodo 94.7 0.15 3.2E-06 50.4 8.7 117 8-125 33-176 (407)
135 PRK08367 porA pyruvate ferredo 94.7 0.14 3E-06 50.4 8.5 114 8-125 27-170 (394)
136 COG0674 PorA Pyruvate:ferredox 94.5 0.26 5.6E-06 48.0 9.5 115 10-125 31-166 (365)
137 TIGR02176 pyruv_ox_red pyruvat 93.6 0.16 3.4E-06 56.5 6.9 86 211-298 953-1067(1165)
138 TIGR00239 2oxo_dh_E1 2-oxoglut 93.5 0.13 2.9E-06 55.4 6.0 88 209-298 343-449 (929)
139 PF02233 PNTB: NAD(P) transhyd 92.3 0.074 1.6E-06 53.0 1.8 59 84-142 304-393 (463)
140 TIGR02176 pyruv_ox_red pyruvat 91.9 0.66 1.4E-05 51.7 8.8 114 10-125 28-170 (1165)
141 COG4231 Indolepyruvate ferredo 91.4 0.39 8.4E-06 49.3 5.9 85 207-293 443-549 (640)
142 PRK09404 sucA 2-oxoglutarate d 91.0 0.37 8E-06 52.2 5.7 87 210-299 343-449 (924)
143 COG4032 Predicted thiamine-pyr 90.8 0.45 9.8E-06 39.9 4.7 106 8-121 24-133 (172)
144 COG1029 FwdB Formylmethanofura 89.6 1.2 2.7E-05 42.8 7.2 60 84-144 76-153 (429)
145 TIGR00204 dxs 1-deoxy-D-xylulo 89.0 1.2 2.5E-05 46.5 7.2 46 206-252 130-176 (617)
146 PRK09444 pntB pyridine nucleot 85.6 0.87 1.9E-05 45.2 3.7 59 84-142 303-392 (462)
147 TIGR00853 pts-lac PTS system, 85.6 1 2.2E-05 35.1 3.5 56 86-142 2-60 (95)
148 COG1419 FlhF Flagellar GTP-bin 84.1 3.1 6.7E-05 40.9 6.8 80 48-137 203-287 (407)
149 COG0552 FtsY Signal recognitio 82.8 2.3 5.1E-05 40.7 5.2 60 55-126 146-205 (340)
150 PF02302 PTS_IIB: PTS system, 82.7 1.4 2.9E-05 33.3 3.0 50 89-138 1-54 (90)
151 cd05564 PTS_IIB_chitobiose_lic 82.7 1.9 4.1E-05 33.6 3.9 53 89-142 1-56 (96)
152 KOG0225 Pyruvate dehydrogenase 82.5 7.3 0.00016 37.3 8.3 89 206-297 184-286 (394)
153 PF00456 Transketolase_N: Tran 81.9 1.9 4.1E-05 41.4 4.4 85 209-299 143-244 (332)
154 KOG0780 Signal recognition par 81.8 2.7 5.8E-05 41.2 5.2 83 44-138 94-190 (483)
155 cd02761 MopB_FmdB-FwdB The Mop 80.7 3.8 8.2E-05 39.9 6.1 85 84-169 67-182 (415)
156 cd05565 PTS_IIB_lactose PTS_II 80.5 2.4 5.2E-05 33.4 3.7 53 89-142 2-57 (99)
157 PF00448 SRP54: SRP54-type pro 80.1 9.7 0.00021 33.6 8.0 62 52-125 5-66 (196)
158 PLN02234 1-deoxy-D-xylulose-5- 77.2 11 0.00025 39.4 8.6 43 207-250 197-240 (641)
159 PRK09590 celB cellobiose phosp 73.2 4.7 0.0001 32.0 3.6 54 88-142 2-60 (104)
160 cd07039 TPP_PYR_POX Pyrimidine 72.8 19 0.00041 30.7 7.6 77 212-299 67-160 (164)
161 PRK09193 indolepyruvate ferred 71.7 9.3 0.0002 42.7 6.6 68 207-277 497-565 (1165)
162 COG0541 Ffh Signal recognition 69.6 8.7 0.00019 38.2 5.2 66 50-127 100-167 (451)
163 COG3414 SgaB Phosphotransferas 69.4 8.1 0.00017 30.1 4.1 52 88-139 2-57 (93)
164 PLN02582 1-deoxy-D-xylulose-5- 68.4 13 0.00029 39.2 6.6 41 207-247 164-205 (677)
165 PRK10499 PTS system N,N'-diace 68.3 9.6 0.00021 30.2 4.4 54 88-142 4-60 (106)
166 cd01410 SIRT7 SIRT7: Eukaryoti 67.6 2.5 5.5E-05 37.6 1.1 42 128-169 152-196 (206)
167 PRK14974 cell division protein 66.2 35 0.00077 32.8 8.6 60 54-125 146-205 (336)
168 cd05569 PTS_IIB_fructose PTS_I 66.1 11 0.00024 29.2 4.3 69 92-165 5-82 (96)
169 PLN02828 formyltetrahydrofolat 64.6 16 0.00035 34.0 5.8 101 50-165 71-179 (268)
170 COG1282 PntB NAD/NADP transhyd 63.5 7.6 0.00017 37.7 3.4 59 84-142 305-394 (463)
171 PF02776 TPP_enzyme_N: Thiamin 63.2 28 0.00062 29.6 6.8 77 213-299 69-163 (172)
172 cd01409 SIRT4 SIRT4: Eukaryoti 63.1 3.4 7.4E-05 38.2 1.0 42 128-169 201-245 (260)
173 cd01413 SIR2_Af2 SIR2_Af2: Arc 63.0 3.2 6.9E-05 37.4 0.8 42 128-169 168-212 (222)
174 cd08192 Fe-ADH7 Iron-containin 62.7 16 0.00034 35.4 5.6 55 87-141 24-91 (370)
175 PRK10310 PTS system galactitol 62.7 11 0.00024 29.2 3.7 54 89-143 4-61 (94)
176 cd01408 SIRT1 SIRT1: Eukaryoti 62.5 3.8 8.3E-05 37.3 1.2 41 128-168 172-214 (235)
177 cd08194 Fe-ADH6 Iron-containin 62.1 17 0.00036 35.4 5.6 54 87-141 23-90 (375)
178 cd08178 AAD_C C-terminal alcoh 61.6 13 0.00029 36.3 5.0 56 86-141 20-88 (398)
179 PRK13030 2-oxoacid ferredoxin 61.4 23 0.00049 39.8 7.0 46 207-252 484-529 (1159)
180 cd06334 PBP1_ABC_ligand_bindin 61.2 79 0.0017 30.1 10.2 55 26-81 41-96 (351)
181 PTZ00409 Sir2 (Silent Informat 60.7 3.7 8E-05 38.3 0.8 42 128-169 196-240 (271)
182 PRK00771 signal recognition pa 60.7 46 0.00099 33.3 8.5 64 50-125 95-160 (437)
183 TIGR02638 lactal_redase lactal 60.6 16 0.00035 35.5 5.3 54 87-141 29-96 (379)
184 TIGR03129 one_C_dehyd_B formyl 60.4 24 0.00051 34.3 6.5 85 84-169 73-188 (421)
185 PRK14138 NAD-dependent deacety 60.3 4 8.7E-05 37.4 1.0 42 128-169 175-219 (244)
186 cd08189 Fe-ADH5 Iron-containin 60.2 18 0.00038 35.2 5.5 55 87-141 26-93 (374)
187 cd01411 SIR2H SIR2H: Uncharact 60.2 5.2 0.00011 36.2 1.6 42 128-169 168-211 (225)
188 PRK10867 signal recognition pa 60.1 45 0.00098 33.3 8.4 35 89-123 130-164 (433)
189 cd08193 HVD 5-hydroxyvalerate 59.6 19 0.00041 35.0 5.6 55 87-141 26-93 (376)
190 PRK14722 flhF flagellar biosyn 59.2 54 0.0012 32.1 8.6 77 50-136 139-220 (374)
191 TIGR00064 ftsY signal recognit 58.9 66 0.0014 29.9 8.8 36 89-124 101-136 (272)
192 PF00766 ETF_alpha: Electron t 58.5 11 0.00024 28.9 2.9 53 89-141 8-73 (86)
193 PRK05703 flhF flagellar biosyn 57.9 37 0.0008 33.7 7.4 76 53-138 226-306 (424)
194 cd08190 HOT Hydroxyacid-oxoaci 57.8 23 0.00051 34.9 5.9 54 87-141 23-90 (414)
195 PF13292 DXP_synthase_N: 1-deo 57.5 27 0.00059 32.5 5.8 47 206-253 130-177 (270)
196 cd02752 MopB_Formate-Dh-Na-lik 56.2 17 0.00037 38.2 4.9 66 104-169 121-213 (649)
197 PRK12723 flagellar biosynthesi 56.2 27 0.00059 34.3 6.0 61 54-122 180-240 (388)
198 PRK11916 electron transfer fla 55.5 31 0.00068 32.9 6.1 79 84-166 191-284 (312)
199 COG2984 ABC-type uncharacteriz 55.3 85 0.0018 30.1 8.8 122 15-142 50-223 (322)
200 PF07085 DRTGG: DRTGG domain; 55.1 18 0.00039 28.2 3.8 36 84-123 58-93 (105)
201 cd05567 PTS_IIB_mannitol PTS_I 54.8 27 0.00058 26.3 4.6 49 88-137 1-51 (87)
202 COG0021 TktA Transketolase [Ca 54.5 43 0.00094 35.0 7.2 82 212-298 151-248 (663)
203 PRK03363 fixB putative electro 54.5 32 0.00069 32.8 6.0 79 84-166 192-285 (313)
204 cd08176 LPO Lactadehyde:propan 54.4 22 0.00047 34.6 5.1 54 87-141 28-95 (377)
205 PRK10624 L-1,2-propanediol oxi 54.4 25 0.00054 34.3 5.5 54 86-140 29-96 (382)
206 PRK09860 putative alcohol dehy 54.2 25 0.00055 34.3 5.4 71 56-140 13-97 (383)
207 cd08188 Fe-ADH4 Iron-containin 54.0 27 0.00058 34.0 5.6 72 56-141 10-95 (377)
208 TIGR03499 FlhF flagellar biosy 53.4 44 0.00096 31.1 6.8 74 54-137 200-278 (282)
209 COG2247 LytB Putative cell wal 53.1 15 0.00032 35.0 3.4 37 106-142 43-86 (337)
210 KOG1182 Branched chain alpha-k 52.8 28 0.0006 33.3 5.1 87 208-297 215-317 (432)
211 PF10087 DUF2325: Uncharacteri 52.8 41 0.00088 25.8 5.4 46 91-139 2-56 (97)
212 PTZ00408 NAD-dependent deacety 52.6 5.8 0.00013 36.3 0.7 42 128-169 169-213 (242)
213 cd08551 Fe-ADH iron-containing 52.6 31 0.00066 33.3 5.7 55 87-141 23-90 (370)
214 COG1154 Dxs Deoxyxylulose-5-ph 52.5 66 0.0014 33.4 8.1 46 205-251 133-180 (627)
215 cd03415 CbiX_CbiC Archaeal sir 52.5 36 0.00078 27.9 5.3 34 90-123 2-39 (125)
216 PRK15454 ethanol dehydrogenase 52.2 26 0.00057 34.4 5.2 74 55-141 30-116 (395)
217 cd08186 Fe-ADH8 Iron-containin 52.0 28 0.00061 33.9 5.4 55 87-141 26-94 (383)
218 COG1454 EutG Alcohol dehydroge 51.2 41 0.00088 33.0 6.3 56 86-141 28-96 (377)
219 cd08191 HHD 6-hydroxyhexanoate 50.4 35 0.00076 33.3 5.8 53 88-141 23-89 (386)
220 PRK00481 NAD-dependent deacety 50.3 10 0.00023 34.5 1.9 42 128-169 174-218 (242)
221 cd08181 PPD-like 1,3-propanedi 50.2 33 0.00072 33.0 5.6 53 88-141 26-93 (357)
222 TIGR01425 SRP54_euk signal rec 49.8 85 0.0019 31.3 8.4 65 50-126 100-166 (429)
223 cd08185 Fe-ADH1 Iron-containin 49.5 36 0.00078 33.1 5.7 52 88-140 26-92 (380)
224 cd02011 TPP_PK Thiamine pyroph 49.0 48 0.001 30.2 5.9 46 206-251 77-126 (227)
225 PF02603 Hpr_kinase_N: HPr Ser 48.9 24 0.00052 28.8 3.7 37 84-123 77-113 (127)
226 cd02774 MopB_Res-Cmplx1_Nad11- 48.7 14 0.00031 35.9 2.7 31 84-114 218-252 (366)
227 cd08175 G1PDH Glycerol-1-phosp 48.5 30 0.00064 33.2 4.9 54 87-141 23-90 (348)
228 KOG0081 GTPase Rab27, small G 48.1 28 0.0006 30.1 4.0 41 87-127 122-167 (219)
229 cd01407 SIR2-fam SIR2 family o 48.0 9.4 0.0002 34.2 1.3 42 128-169 164-208 (218)
230 PRK10416 signal recognition pa 48.0 93 0.002 29.6 8.1 58 55-124 121-178 (318)
231 PLN00022 electron transfer fla 47.6 34 0.00075 33.2 5.1 79 84-166 234-326 (356)
232 COG1440 CelA Phosphotransferas 47.0 38 0.00082 26.8 4.3 54 88-142 2-58 (102)
233 PRK13761 hypothetical protein; 46.8 37 0.0008 30.9 4.8 43 84-127 64-106 (248)
234 cd00296 SIR2 SIR2 superfamily 46.8 9.1 0.0002 34.0 1.0 41 128-168 166-209 (222)
235 cd06586 TPP_enzyme_PYR Pyrimid 46.4 1.5E+02 0.0032 24.1 8.3 31 217-249 68-98 (154)
236 COG4231 Indolepyruvate ferredo 46.2 91 0.002 32.6 8.0 53 7-61 35-93 (640)
237 PRK12319 acetyl-CoA carboxylas 45.3 39 0.00085 31.3 4.9 26 115-140 136-166 (256)
238 PF09818 ABC_ATPase: Predicted 45.1 33 0.00072 34.2 4.6 125 15-139 259-412 (448)
239 cd07035 TPP_PYR_POX_like Pyrim 45.0 1.4E+02 0.0031 24.4 8.1 37 213-251 64-100 (155)
240 TIGR00959 ffh signal recogniti 44.4 1.3E+02 0.0028 30.1 8.7 35 89-123 129-163 (428)
241 cd08170 GlyDH Glycerol dehydro 43.2 30 0.00066 33.1 4.0 54 87-141 22-87 (351)
242 PRK12726 flagellar biosynthesi 42.8 72 0.0016 31.6 6.5 75 53-139 211-293 (407)
243 COG2086 FixA Electron transfer 42.5 1.2E+02 0.0025 28.2 7.6 98 24-123 29-146 (260)
244 PF13399 LytR_C: LytR cell env 42.4 61 0.0013 24.3 4.9 47 88-143 43-89 (90)
245 PRK03359 putative electron tra 42.1 1.2E+02 0.0026 28.0 7.6 100 24-123 28-147 (256)
246 PTZ00410 NAD-dependent SIR2; P 42.1 14 0.0003 35.8 1.5 39 128-166 202-242 (349)
247 cd06327 PBP1_SBP_like_1 Peripl 41.8 1.6E+02 0.0035 27.3 8.8 56 25-81 39-96 (334)
248 PRK09330 cell division protein 41.1 94 0.002 30.5 7.1 30 52-81 16-45 (384)
249 cd05566 PTS_IIB_galactitol PTS 41.0 52 0.0011 24.5 4.3 51 88-138 1-55 (89)
250 PRK13030 2-oxoacid ferredoxin 40.9 66 0.0014 36.2 6.6 114 6-120 48-198 (1159)
251 cd01412 SIRT5_Af1_CobB SIRT5_A 39.3 18 0.00039 32.4 1.7 40 130-169 163-205 (224)
252 PRK08760 replicative DNA helic 39.2 40 0.00087 34.0 4.3 36 103-138 367-421 (476)
253 TIGR00829 FRU PTS system, fruc 38.8 53 0.0011 24.9 4.0 40 103-142 16-63 (85)
254 PRK08611 pyruvate oxidase; Pro 38.7 88 0.0019 32.2 6.9 82 212-299 72-165 (576)
255 COG3959 Transketolase, N-termi 38.7 1.1E+02 0.0025 27.8 6.6 84 207-297 139-240 (243)
256 PF02146 SIR2: Sir2 family; I 38.4 14 0.00031 31.8 0.9 16 128-143 160-175 (178)
257 cd08180 PDD 1,3-propanediol de 38.2 61 0.0013 30.8 5.2 54 87-141 22-88 (332)
258 PRK05595 replicative DNA helic 38.2 46 0.00099 33.2 4.5 36 104-139 340-394 (444)
259 PF03796 DnaB_C: DnaB-like hel 38.2 27 0.0006 31.7 2.8 37 104-140 159-214 (259)
260 PF00465 Fe-ADH: Iron-containi 38.1 22 0.00048 34.3 2.2 58 84-141 18-88 (366)
261 TIGR01357 aroB 3-dehydroquinat 38.1 61 0.0013 30.9 5.3 54 87-141 20-91 (344)
262 COG1709 Predicted transcriptio 38.1 64 0.0014 29.2 4.9 70 39-124 156-229 (241)
263 PRK13398 3-deoxy-7-phosphohept 38.0 48 0.001 30.8 4.3 59 84-144 50-122 (266)
264 cd08179 NADPH_BDH NADPH-depend 37.8 63 0.0014 31.3 5.4 54 87-141 23-91 (375)
265 PF13458 Peripla_BP_6: Peripla 37.2 1E+02 0.0022 28.4 6.6 116 26-141 43-200 (343)
266 PRK05724 acetyl-CoA carboxylas 37.0 35 0.00076 32.7 3.3 95 41-140 99-219 (319)
267 COG3925 N-terminal domain of t 36.9 1.2E+02 0.0025 23.8 5.5 34 103-143 19-52 (103)
268 cd08182 HEPD Hydroxyethylphosp 36.9 68 0.0015 30.9 5.4 52 87-141 23-87 (367)
269 PF02006 DUF137: Protein of un 36.8 35 0.00076 29.6 2.9 43 84-127 1-43 (178)
270 cd08173 Gro1PDH Sn-glycerol-1- 36.7 66 0.0014 30.7 5.2 54 86-141 24-88 (339)
271 PLN03229 acetyl-coenzyme A car 36.2 45 0.00098 35.4 4.2 95 41-140 190-310 (762)
272 cd08187 BDH Butanol dehydrogen 35.6 68 0.0015 31.2 5.2 54 87-141 28-96 (382)
273 PRK08006 replicative DNA helic 35.2 50 0.0011 33.3 4.3 36 104-139 365-419 (471)
274 PRK07004 replicative DNA helic 35.2 45 0.00098 33.5 4.0 36 104-139 353-407 (460)
275 PRK08840 replicative DNA helic 34.7 52 0.0011 33.1 4.3 38 104-142 358-414 (464)
276 PF11071 DUF2872: Protein of u 34.7 75 0.0016 26.4 4.4 23 99-121 6-28 (141)
277 PRK05636 replicative DNA helic 34.6 52 0.0011 33.5 4.3 36 104-139 404-458 (505)
278 cd06347 PBP1_ABC_ligand_bindin 34.4 2.5E+02 0.0055 25.6 8.8 57 25-82 40-98 (334)
279 PRK14723 flhF flagellar biosyn 34.3 97 0.0021 33.3 6.3 77 52-138 189-270 (767)
280 PRK06321 replicative DNA helic 34.3 52 0.0011 33.2 4.2 36 104-139 368-422 (472)
281 PRK13805 bifunctional acetalde 34.3 69 0.0015 34.8 5.5 58 84-141 477-549 (862)
282 cd03115 SRP The signal recogni 34.1 2E+02 0.0043 24.0 7.3 35 88-122 28-62 (173)
283 cd06328 PBP1_SBP_like_2 Peripl 33.8 3.2E+02 0.0069 25.4 9.4 55 25-81 41-98 (333)
284 PRK06749 replicative DNA helic 33.8 56 0.0012 32.5 4.3 38 104-142 329-385 (428)
285 PLN02470 acetolactate synthase 33.7 1.2E+02 0.0025 31.4 6.8 84 212-298 80-173 (585)
286 PRK06904 replicative DNA helic 33.7 54 0.0012 33.1 4.2 35 104-138 363-416 (472)
287 TIGR01504 glyox_carbo_lig glyo 33.2 1.5E+02 0.0032 30.7 7.4 76 215-299 74-165 (588)
288 PRK12342 hypothetical protein; 33.2 2.4E+02 0.0053 26.0 8.1 99 24-123 27-144 (254)
289 cd06343 PBP1_ABC_ligand_bindin 33.0 2.7E+02 0.0059 26.1 8.8 56 26-81 48-104 (362)
290 PRK05333 NAD-dependent deacety 32.9 20 0.00044 33.5 1.0 42 128-169 211-255 (285)
291 PF04227 Indigoidine_A: Indigo 32.8 21 0.00046 33.6 1.1 79 43-121 76-174 (293)
292 PF06711 DUF1198: Protein of u 32.8 32 0.00069 28.8 2.0 36 91-126 12-52 (148)
293 TIGR03600 phage_DnaB phage rep 32.8 60 0.0013 32.0 4.3 36 104-139 333-387 (421)
294 PRK08327 acetolactate synthase 32.7 1.5E+02 0.0032 30.6 7.3 83 213-298 80-181 (569)
295 cd06346 PBP1_ABC_ligand_bindin 32.5 2.6E+02 0.0056 25.7 8.5 55 26-81 41-98 (312)
296 PF05124 S_layer_C: S-layer li 32.4 1.1E+02 0.0023 27.8 5.4 52 84-141 150-207 (222)
297 cd07766 DHQ_Fe-ADH Dehydroquin 32.1 78 0.0017 29.9 4.9 54 87-141 23-88 (332)
298 cd08169 DHQ-like Dehydroquinat 32.1 1E+02 0.0022 29.6 5.7 54 87-141 23-93 (344)
299 TIGR01564 S_layer_MJ S-layer p 32.1 72 0.0016 32.8 4.7 54 84-141 499-556 (571)
300 PRK11889 flhF flagellar biosyn 31.9 1.2E+02 0.0026 30.3 6.1 61 53-125 246-306 (436)
301 PRK09193 indolepyruvate ferred 31.5 82 0.0018 35.5 5.4 114 6-120 56-206 (1165)
302 PRK10427 putative PTS system f 31.3 75 0.0016 25.6 3.9 59 103-166 21-88 (114)
303 TIGR03186 AKGDH_not_PDH alpha- 31.3 2.1E+02 0.0046 31.4 8.3 42 209-250 218-260 (889)
304 PRK10474 putative PTS system f 31.1 81 0.0018 24.0 3.9 58 103-165 2-68 (88)
305 PRK07789 acetolactate synthase 31.0 1.4E+02 0.0029 31.1 6.8 84 212-298 98-191 (612)
306 PHA02542 41 41 helicase; Provi 31.0 54 0.0012 33.1 3.7 36 104-139 333-385 (473)
307 cd08183 Fe-ADH2 Iron-containin 30.9 96 0.0021 30.0 5.4 52 87-141 22-85 (374)
308 cd03414 CbiX_SirB_C Sirohydroc 30.7 58 0.0013 25.6 3.2 35 90-124 2-41 (117)
309 PF10137 TIR-like: Predicted n 30.7 1.1E+02 0.0024 25.0 4.9 51 92-143 2-62 (125)
310 cd00133 PTS_IIB PTS_IIB: subun 30.6 98 0.0021 21.9 4.3 48 90-137 2-52 (84)
311 CHL00198 accA acetyl-CoA carbo 30.6 60 0.0013 31.1 3.7 95 42-141 103-223 (322)
312 PF12813 XPG_I_2: XPG domain c 30.5 73 0.0016 29.2 4.2 41 83-137 12-55 (246)
313 TIGR00789 flhB_rel flhB C-term 30.4 72 0.0016 24.1 3.5 33 87-122 15-47 (82)
314 TIGR00513 accA acetyl-CoA carb 30.4 53 0.0011 31.4 3.3 95 41-140 99-219 (316)
315 cd08550 GlyDH-like Glycerol_de 30.4 73 0.0016 30.5 4.4 53 88-141 23-87 (349)
316 cd08177 MAR Maleylacetate redu 30.3 57 0.0012 31.1 3.6 54 87-141 23-87 (337)
317 PRK09423 gldA glycerol dehydro 30.3 69 0.0015 30.9 4.3 53 88-141 30-94 (366)
318 PLN02757 sirohydrochlorine fer 30.1 58 0.0013 27.6 3.3 29 87-115 12-40 (154)
319 TIGR03254 oxalate_oxc oxalyl-C 29.8 1.7E+02 0.0036 29.9 7.2 79 213-299 70-165 (554)
320 cd06338 PBP1_ABC_ligand_bindin 29.7 3.7E+02 0.0081 24.8 9.1 55 26-82 45-102 (345)
321 cd01171 YXKO-related B.subtili 29.7 1.8E+02 0.004 26.1 6.7 82 35-123 21-112 (254)
322 cd08174 G1PDH-like Glycerol-1- 29.5 1.2E+02 0.0025 28.8 5.6 71 55-141 4-85 (331)
323 cd06340 PBP1_ABC_ligand_bindin 29.4 4.5E+02 0.0098 24.5 9.7 56 26-82 44-101 (347)
324 TIGR03646 YtoQ_fam YtoQ family 29.1 1E+02 0.0022 25.7 4.3 23 99-121 9-31 (144)
325 cd02201 FtsZ_type1 FtsZ is a G 28.9 2E+02 0.0044 27.0 7.1 73 54-127 5-98 (304)
326 cd08171 GlyDH-like2 Glycerol d 28.4 73 0.0016 30.5 4.0 53 88-141 23-88 (345)
327 TIGR02720 pyruv_oxi_spxB pyruv 28.1 1.5E+02 0.0032 30.5 6.5 84 212-299 67-160 (575)
328 PRK05782 bifunctional sirohydr 28.0 81 0.0018 30.4 4.2 38 87-124 5-46 (335)
329 PRK09259 putative oxalyl-CoA d 27.8 1.9E+02 0.004 29.7 7.1 85 212-299 76-172 (569)
330 PRK08506 replicative DNA helic 27.7 77 0.0017 31.9 4.2 35 105-139 332-385 (472)
331 PRK07586 hypothetical protein; 27.7 1.8E+02 0.004 29.3 7.0 65 227-299 81-162 (514)
332 PRK06276 acetolactate synthase 27.3 1.8E+02 0.004 29.9 7.0 78 212-299 67-161 (586)
333 PF00308 Bac_DnaA: Bacterial d 27.3 1.7E+02 0.0037 26.0 6.0 56 28-83 10-72 (219)
334 TIGR01973 NuoG NADH-quinone ox 26.9 98 0.0021 32.1 4.9 85 84-169 299-406 (603)
335 PRK12727 flagellar biosynthesi 26.7 1.8E+02 0.0039 30.1 6.6 62 52-123 354-415 (559)
336 cd05013 SIS_RpiR RpiR-like pro 26.7 1.2E+02 0.0027 23.7 4.6 56 84-141 10-70 (139)
337 PRK09107 acetolactate synthase 26.7 1.6E+02 0.0034 30.6 6.3 78 212-299 78-172 (595)
338 PRK00923 sirohydrochlorin coba 26.6 76 0.0016 25.4 3.3 36 88-123 1-41 (126)
339 PRK03958 tRNA 2'-O-methylase; 26.5 3.2E+02 0.0069 23.9 7.2 95 45-140 26-131 (176)
340 COG0825 AccA Acetyl-CoA carbox 26.5 1.5E+02 0.0033 28.1 5.4 41 87-127 105-162 (317)
341 PRK09165 replicative DNA helic 26.4 84 0.0018 31.9 4.2 35 104-138 372-425 (497)
342 COG1445 FrwB Phosphotransferas 26.0 1.1E+02 0.0023 25.1 3.9 39 101-139 18-64 (122)
343 PRK06466 acetolactate synthase 25.9 1.6E+02 0.0035 30.2 6.3 34 212-247 71-104 (574)
344 KOG0523 Transketolase [Carbohy 25.7 2.9E+02 0.0063 28.8 7.7 84 209-297 141-240 (632)
345 cd02768 MopB_NADH-Q-OR-NuoG2 M 25.6 1.2E+02 0.0025 29.2 4.9 78 89-167 89-190 (386)
346 PRK06725 acetolactate synthase 25.5 1.7E+02 0.0036 30.2 6.3 83 212-299 81-175 (570)
347 cd08195 DHQS Dehydroquinate sy 25.5 1.4E+02 0.0031 28.5 5.4 55 86-141 23-95 (345)
348 PRK03972 ribosomal biogenesis 25.4 1.7E+02 0.0036 26.3 5.4 57 88-145 104-164 (208)
349 cd02773 MopB_Res-Cmplx1_Nad11 25.1 1.3E+02 0.0027 29.0 5.1 54 91-144 89-158 (375)
350 PF06283 ThuA: Trehalose utili 25.1 87 0.0019 27.6 3.6 53 89-141 1-62 (217)
351 PRK07282 acetolactate synthase 25.0 1.3E+02 0.0028 30.9 5.3 85 212-299 77-171 (566)
352 cd03145 GAT1_cyanophycinase Ty 24.8 1.4E+02 0.003 26.5 4.9 14 128-141 80-93 (217)
353 cd05005 SIS_PHI Hexulose-6-pho 24.7 1.9E+02 0.0042 24.5 5.7 55 84-140 30-84 (179)
354 cd06345 PBP1_ABC_ligand_bindin 24.7 2.2E+02 0.0048 26.5 6.6 73 50-124 2-100 (344)
355 cd02774 MopB_Res-Cmplx1_Nad11- 24.7 1.4E+02 0.0031 29.0 5.3 77 88-165 88-188 (366)
356 PRK07979 acetolactate synthase 24.4 1.7E+02 0.0037 30.0 6.1 85 212-299 71-165 (574)
357 PF13685 Fe-ADH_2: Iron-contai 24.4 62 0.0013 29.8 2.6 55 86-141 18-85 (250)
358 PRK04220 2-phosphoglycerate ki 24.2 1.1E+02 0.0024 29.0 4.3 37 83-119 85-121 (301)
359 PLN03230 acetyl-coenzyme A car 24.2 81 0.0018 31.4 3.4 94 42-140 170-289 (431)
360 PRK06457 pyruvate dehydrogenas 24.1 1.7E+02 0.0037 29.9 6.0 83 213-299 69-161 (549)
361 COG0846 SIR2 NAD-dependent pro 23.9 45 0.00099 30.7 1.6 42 128-169 179-223 (250)
362 cd06360 PBP1_alkylbenzenes_lik 23.8 4.8E+02 0.01 23.9 8.6 54 26-82 39-96 (336)
363 PRK06112 acetolactate synthase 23.7 1.8E+02 0.004 29.8 6.2 83 213-298 79-171 (578)
364 PRK08322 acetolactate synthase 23.7 2.1E+02 0.0046 29.0 6.6 85 212-299 67-161 (547)
365 TIGR03405 Phn_Fe-ADH phosphona 23.6 94 0.002 29.9 3.8 52 87-141 23-90 (355)
366 PRK06456 acetolactate synthase 23.6 1.9E+02 0.0042 29.6 6.3 82 213-299 73-166 (572)
367 cd06356 PBP1_Amide_Urea_BP_lik 23.5 4.9E+02 0.011 24.2 8.7 55 25-81 40-97 (334)
368 PRK07525 sulfoacetaldehyde ace 23.5 2.1E+02 0.0046 29.5 6.6 77 212-299 72-165 (588)
369 PRK07710 acetolactate synthase 23.5 1.8E+02 0.0039 29.9 6.0 83 212-299 82-176 (571)
370 PRK06882 acetolactate synthase 23.4 1.8E+02 0.0039 29.8 6.1 34 212-247 71-104 (574)
371 TIGR01591 Fdh-alpha formate de 23.4 1.4E+02 0.003 31.2 5.3 41 128-168 152-197 (671)
372 cd02750 MopB_Nitrate-R-NarG-li 23.3 1.3E+02 0.0029 29.8 5.0 42 128-169 167-213 (461)
373 cd05563 PTS_IIB_ascorbate PTS_ 23.1 2E+02 0.0044 21.0 4.9 49 89-137 1-51 (86)
374 PRK00002 aroB 3-dehydroquinate 22.9 1.6E+02 0.0036 28.2 5.4 54 87-141 31-102 (358)
375 TIGR03457 sulphoacet_xsc sulfo 22.9 2.1E+02 0.0045 29.5 6.4 84 212-299 68-161 (579)
376 COG2377 Predicted molecular ch 22.9 73 0.0016 31.1 2.8 37 84-122 287-323 (371)
377 cd08549 G1PDH_related Glycerol 22.7 1.4E+02 0.0031 28.3 4.9 73 56-141 5-90 (332)
378 PRK13946 shikimate kinase; Pro 22.7 1.2E+02 0.0027 25.9 4.1 33 88-122 10-42 (184)
379 PRK11269 glyoxylate carboligas 22.6 2.4E+02 0.0052 29.1 6.8 82 213-299 73-166 (591)
380 PF13223 DUF4031: Protein of u 22.6 64 0.0014 24.6 1.9 18 101-118 20-37 (83)
381 PRK09130 NADH dehydrogenase su 22.5 88 0.0019 33.2 3.6 32 84-115 434-469 (687)
382 PRK05748 replicative DNA helic 22.4 1.1E+02 0.0024 30.5 4.1 36 104-139 344-398 (448)
383 cd06358 PBP1_NHase Type I peri 22.3 6.2E+02 0.013 23.3 9.3 55 25-82 40-97 (333)
384 PF06258 Mito_fiss_Elm1: Mitoc 21.8 6E+02 0.013 24.0 8.8 75 51-125 58-192 (311)
385 PRK04169 geranylgeranylglycery 21.8 2.5E+02 0.0053 25.6 5.9 54 85-138 29-83 (232)
386 PRK07524 hypothetical protein; 21.6 2.8E+02 0.0061 28.1 7.0 37 211-249 67-103 (535)
387 KOG0781 Signal recognition par 21.6 1.6E+02 0.0034 30.1 4.9 75 63-137 364-472 (587)
388 TIGR00665 DnaB replicative DNA 21.6 1.2E+02 0.0027 29.8 4.3 35 105-139 335-388 (434)
389 TIGR03863 PQQ_ABC_bind ABC tra 21.5 5.9E+02 0.013 24.3 8.8 111 26-139 35-195 (347)
390 cd00758 MoCF_BD MoCF_BD: molyb 21.3 2.1E+02 0.0045 23.2 4.9 39 102-140 19-67 (133)
391 PRK07418 acetolactate synthase 21.3 2.7E+02 0.0058 28.9 6.9 85 212-299 89-183 (616)
392 TIGR01768 GGGP-family geranylg 21.3 2.8E+02 0.0061 25.1 6.1 55 84-138 23-78 (223)
393 cd07037 TPP_PYR_MenD Pyrimidin 21.3 5.1E+02 0.011 21.9 7.7 82 212-296 64-161 (162)
394 PRK06995 flhF flagellar biosyn 21.2 4.1E+02 0.0089 27.0 7.9 62 52-124 260-322 (484)
395 PRK08199 thiamine pyrophosphat 21.0 3E+02 0.0065 28.1 7.1 32 212-245 75-106 (557)
396 TIGR00065 ftsZ cell division p 20.8 3.2E+02 0.007 26.4 6.8 77 50-127 18-115 (349)
397 cd02766 MopB_3 The MopB_3 CD i 20.8 1.1E+02 0.0024 30.8 3.8 122 27-169 69-200 (501)
398 PRK13029 2-oxoacid ferredoxin 20.7 1.3E+02 0.0028 34.0 4.5 46 207-252 511-556 (1186)
399 COG0028 IlvB Thiamine pyrophos 20.5 2.8E+02 0.006 28.6 6.7 85 211-298 67-161 (550)
400 PRK15404 leucine ABC transport 20.5 6.9E+02 0.015 23.7 9.2 55 25-81 66-122 (369)
401 cd06331 PBP1_AmiC_like Type I 20.5 6.5E+02 0.014 23.1 8.8 55 25-81 40-97 (333)
402 PRK08155 acetolactate synthase 20.4 2.3E+02 0.0051 28.9 6.2 84 213-299 81-174 (564)
403 PLN02225 1-deoxy-D-xylulose-5- 20.4 1.3E+02 0.0029 32.0 4.3 49 205-254 207-256 (701)
404 PRK13018 cell division protein 20.2 2.7E+02 0.0058 27.3 6.2 32 50-81 29-60 (378)
405 cd06344 PBP1_ABC_ligand_bindin 20.2 6.8E+02 0.015 23.0 10.2 57 25-81 39-96 (332)
406 PRK15138 aldehyde reductase; P 20.1 1.4E+02 0.0031 29.1 4.3 51 87-140 29-94 (387)
No 1
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1.3e-63 Score=502.10 Aligned_cols=288 Identities=25% Similarity=0.323 Sum_probs=239.0
Q ss_pred CcCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh-
Q 038651 7 SSSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA- 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~- 83 (324)
..+||+ ++++||+|+++ +|++|.+||||+|+||||||||+|| +|||++|+|||+||++|||++|+.|++|||+||+
T Consensus 21 FGiPG~~i~~~~dal~~~-~i~~I~~RHEq~Aa~mAdgyar~TGkpgV~~~tsGPGatN~~tgla~A~~d~~Pll~itGq 99 (550)
T COG0028 21 FGIPGGSILPLYDALYDS-GIRHILVRHEQGAAFAADGYARATGKPGVCLVTSGPGATNLLTGLADAYMDSVPLLAITGQ 99 (550)
T ss_pred EeCCCccHHHHHHHHHhC-CCcEEEeccHHHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 468999 99999999986 8999999999999999999999999 9999999999999999999999999999999963
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 100 v~~~~~g~~afQe~D~~~l~~p~tk~~~~v~~~~~ip~~i~~Af~~A~sgrpGpv~i~iP~Dv~~~~~~~~~~~~~~~~~ 179 (550)
T COG0028 100 VPTSLIGTDAFQEVDQVGLFRPITKYNFEVRSPEDIPEVVARAFRIALSGRPGPVVVDLPKDVLAAEAEEPGPEPAILPP 179 (550)
T ss_pred ccccccCcchhhhcchhhHhhhhheeEEEeCCHHHHHHHHHHHHHHHhcCCCceEEEEcChhHhhccccccccccccccc
Confidence
Q ss_pred -----------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc-------------------
Q 038651 84 -----------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM------------------- 127 (324)
Q Consensus 84 -----------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~------------------- 127 (324)
|++||||+|++|+|+.++++.+++++|+|++++||++|++|||+
T Consensus 180 ~~p~~~~~~~i~~aa~~L~~AkrPvIl~G~G~~~a~a~~~l~~lae~~~~Pv~~t~~gkg~~p~~hp~~lG~~g~~g~~~ 259 (550)
T COG0028 180 YRPAPPPPEAIRKAAELLAEAKRPVILAGGGVRRAGASEELRELAEKLGAPVVTTLMGKGAVPEDHPLSLGMLGMHGTKA 259 (550)
T ss_pred CCCCCCcHHHHHHHHHHHHhCCCCEEEECCCccccccHHHHHHHHHHHCCCEEEccCcCccCCCCCccccccccccccHH
Confidence 89999999999999999999999999999999999999999998
Q ss_pred ---cccCCcEEEEEcCccCCcccccccccCCCC-EEEEcCCccccccCCChh------h---HHHHHH-------Hhhhh
Q 038651 128 ---IVEFADAYIFVESIFNDYSSVGYSLLLNKK-AILMQPDRIVVANGLLLP------N---RNTSAY-------ESYHR 187 (324)
Q Consensus 128 ---~l~~aDlvl~lG~~~~~~~t~~~~~~~~~~-iI~id~d~~~i~~~~~~~------d---~l~~~~-------~~~~~ 187 (324)
++++|||||+||+||+|+.++ |..+.++. +||||+|+.+++ ++... | +|+++. ..|..
T Consensus 260 a~~~~~~aDlll~vG~rf~~~~~~-~~~f~~~~~ii~iDidp~ei~-k~~~~~~~i~gD~~~~l~~L~~~l~~~~~~~~~ 337 (550)
T COG0028 260 ANEALEEADLLLAVGARFDDRVTG-YSGFAPPAAIIHIDIDPAEIG-KNYPVDVPIVGDAKATLEALLEELKPERAAWLE 337 (550)
T ss_pred HHHHhhcCCEEEEecCCCcccccc-hhhhCCcCCEEEEeCChHHhC-CCCCCCeeEeccHHHHHHHHHHhhhhcchHHHH
Confidence 678999999999999999888 66555443 999999999998 32222 2 233221 11210
Q ss_pred -------ccC-----C----CCCCC-------C-------------------------CCCCCCE---------------
Q 038651 188 -------IYV-----P----HGIPL-------K-------------------------SNAHEPL--------------- 204 (324)
Q Consensus 188 -------~~~-----~----~~~~~-------~-------------------------~~~~~~l--------------- 204 (324)
.+. . ...+. . ..|...+
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~l~~~~~~daiv~~d~G~~~~w~a~~~~~~~p~~~~~s~~~GtMG~glPaA 417 (550)
T COG0028 338 ELLEARAAYRDLALEELADDGIKPQYVIKVLRELLPDDAIVVTDVGQHQMWAARYFDFYRPRRFLTSGGLGTMGFGLPAA 417 (550)
T ss_pred HHHHHHHhhhhhhhhccCCCccCHHHHHHHHHHhCCCCeEEEeCCcHHHHHHHHhcccCCCCcEEcCCCCccccchHHHH
Confidence 000 0 00000 0 0111111
Q ss_pred ----EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhh----CC--CCCCCCCCCHHHHHHH
Q 038651 205 ----MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIH----DG--PYNVIENWNYTGLVEA 274 (324)
Q Consensus 205 ----~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~----~~--~~~~l~~~df~~lA~a 274 (324)
...|++.|++.+||++|.|+ .|||+|++||++|+++||+||++|++++..| .. ...++.++.|+++||+
T Consensus 418 IGAkla~P~r~Vv~i~GDG~F~m~-~qEL~Ta~r~~lpv~ivv~nN~~~g~v~~~q~~~~~~~~~~~~~~~~~f~klAea 496 (550)
T COG0028 418 IGAKLAAPDRKVVAIAGDGGFMMN-GQELETAVRYGLPVKIVVLNNGGYGMVRQWQELFYGGRYSGTDLGNPDFVKLAEA 496 (550)
T ss_pred HHHHhhCCCCcEEEEEcccHHhcc-HHHHHHHHHhCCCEEEEEEECCccccchHHHHHhcCCCcceeecCCccHHHHHHH
Confidence 56788999999999999998 4999999999999999999999999999876 22 2356665559999999
Q ss_pred HHH-------------HHHHhHHhCCCCeEEEEEEecCC
Q 038651 275 FQN-------------AIETAAVEKKDCLCFIEAIVHKD 300 (324)
Q Consensus 275 ~G~-------------al~~a~~~~~~~p~lIeV~id~~ 300 (324)
||+ +|++|+ ++++|+||||.+|++
T Consensus 497 ~G~~g~~v~~~~el~~al~~al--~~~~p~lidv~id~~ 533 (550)
T COG0028 497 YGAKGIRVETPEELEEALEEAL--ASDGPVLIDVVVDPE 533 (550)
T ss_pred cCCeeEEeCCHHHHHHHHHHHH--hCCCCEEEEEEecCc
Confidence 999 888885 899999999999998
No 2
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=100.00 E-value=1.6e-61 Score=465.92 Aligned_cols=311 Identities=36% Similarity=0.558 Sum_probs=267.2
Q ss_pred CcCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcCceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh--
Q 038651 7 SSSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARAVGAYVVTFIVGRLSIINAIAGAYSENFPAATITA-- 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~-- 83 (324)
..+||+ +++|+|.|...+++|||++.||.+|+||||||||++|++++++|+|+|.+++++|||++|+|++|||+|++
T Consensus 23 FGVPGDyNL~lLD~i~~~~~lrWvGn~NELNaaYAADGYaR~~Gi~alvTTfGVGELSA~NGIAGSYAE~vpVvhIvG~P 102 (557)
T COG3961 23 FGVPGDYNLSLLDKIYSVPGLRWVGNANELNAAYAADGYARLNGISALVTTFGVGELSALNGIAGSYAEHVPVVHIVGVP 102 (557)
T ss_pred eeCCCcccHHHHHHhhcCCCceeecccchhhhhhhhcchhhhcCceEEEEecccchhhhhcccchhhhhcCCEEEEEcCC
Confidence 468999 99999999998899999999999999999999999999999999999999999999999999999999931
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 103 ~~~~q~~~~llHHTLG~gdF~~f~~M~~~itca~a~l~~~~~A~~eIDrvi~~~~~~~RPvYI~lP~dva~~~~~~p~~P 182 (557)
T COG3961 103 TTSAQASGLLLHHTLGDGDFKVFHRMSKEITCAQAMLTDINTAPREIDRVIRTALKQRRPVYIGLPADVADLPIEAPLTP 182 (557)
T ss_pred CcchhhccchheeeccCCchHHHHHHhhhhhhHhhhcCCcchhHHHHHHHHHHHHHhcCCeEEEcchHHhcCcCCCCCCc
Confidence
Q ss_pred -----------------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc-------------
Q 038651 84 -----------------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM------------- 127 (324)
Q Consensus 84 -----------------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~------------- 127 (324)
|+++|+|+|++|..+.|.+..+++.+|++++++|+++++||||+
T Consensus 183 l~~~~~~sd~e~~~e~i~~i~~lI~~ak~p~ILad~~~~r~~~~~~~~~l~~~t~~p~~~~pmGKg~idEs~P~y~GvY~ 262 (557)
T COG3961 183 LDLQLKTSDPEALSEVIDTIAELINKAKKPVILADALVSRFGLEKELKKLINATGFPVATLPMGKGVIDESHPNYLGVYN 262 (557)
T ss_pred cccccCCCCHHHHHHHHHHHHHHHhccCCcEEecchhhhhhhhHHHHHHHHHhcCCCeEEeecccccccccCCCeeeEEe
Confidence 78899999999999999999999999999999999999999998
Q ss_pred ----------cccCCcEEEEEcCccCCcccccccccCCCC-EEEEcCCccccccCCChh-----hHHHHHHHhhhh---c
Q 038651 128 ----------IVEFADAYIFVESIFNDYSSVGYSLLLNKK-AILMQPDRIVVANGLLLP-----NRNTSAYESYHR---I 188 (324)
Q Consensus 128 ----------~l~~aDlvl~lG~~~~~~~t~~~~~~~~~~-iI~id~d~~~i~~~~~~~-----d~l~~~~~~~~~---~ 188 (324)
+++.|||||.+|+.|+|++|++|+..++.+ +|+++++..++. ...++ |+|+++...... .
T Consensus 263 G~~s~~~vre~vE~aD~il~iG~~ltD~~Tg~Ft~~~~~~~~i~~~~~~v~I~-~~~f~~l~m~~~L~~L~~~i~~~~~~ 341 (557)
T COG3961 263 GKLSEPEVREAVESADLILTIGVLLTDFNTGGFTYQYKPANIIEIHPDSVKIK-DAVFTNLSMKDALQELAKKIDKRNLS 341 (557)
T ss_pred cccCCHHHHHHhhcCCEEEEeceEEeeccccceeeecCcccEEEeccCeeEec-ccccCCeeHHHHHHHHHHHhhhcccC
Confidence 889999999999999999999999877766 999999999887 55554 667665432111 0
Q ss_pred cCC----CCCCC--CCCCCCCE-----------EecCCCeEEEecCchHHhhhHH-------------------------
Q 038651 189 YVP----HGIPL--KSNAHEPL-----------MLSGNTAVIAETGDSWFNCQKD------------------------- 226 (324)
Q Consensus 189 ~~~----~~~~~--~~~~~~~l-----------~~~~~~~vv~d~G~~~~~~~~~------------------------- 226 (324)
..+ ...+. ......+| ++.|+++|++|+|++.|++.+.
T Consensus 342 ~~~~~~~~~~p~~~~~~~~~pLtq~~~w~~~~~fl~p~dviiaetGtS~FG~~~~~lP~~~~~i~Q~lWGSIG~t~pAal 421 (557)
T COG3961 342 APPVAYPARTPPTPYPPANEPLTQEWLWNTVQNFLKPGDVIIAETGTSFFGALDIRLPKGATFISQPLWGSIGYTLPAAL 421 (557)
T ss_pred CCCccCCCCCCCCCCCCCCCcccHHHHHHHHHhhCCCCCEEEEccccccccceeeecCCCCeEEcccchhhcccccHhhh
Confidence 111 11110 11112233 7778888888888777776544
Q ss_pred ------------------------HHHHHHHHhCCCeEEEEEeCCchhhhhhhhC--CCCCCCCCCCHHHHHHHHHH---
Q 038651 227 ------------------------VDVSTMLRCEQKNIIFLINNGNYTIEVEIHD--GPYNVIENWNYTGLVEAFQN--- 277 (324)
Q Consensus 227 ------------------------qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~--~~~~~l~~~df~~lA~a~G~--- 277 (324)
||++|++|++|+++|||+||.||.+||.+|+ .+||||.+|||.+|.++||+
T Consensus 422 Ga~~A~~drR~IL~iGDGs~QlTvQEiStmiR~gl~p~ifvlNN~GYTIEr~IHg~~~~YNdI~~Wd~~~l~~afg~~~~ 501 (557)
T COG3961 422 GAALAAPDRRVILFIGDGSLQLTVQEISTMIRWGLKPIIFVLNNDGYTIERAIHGPTAPYNDIQSWDYTALPEAFGAKNG 501 (557)
T ss_pred hhhhcCCCccEEEEEcCchhhhhHHHHHHHHHcCCCcEEEEEcCCCcEEEehhcCCCcCcccccccchhhhhhhcCCCCc
Confidence 9999999999999999999999999999995 78999999999999999999
Q ss_pred --------------HHHHhHHhCCCCeEEEEEEecCCCCcHHHHHHHHHhhhhcCC
Q 038651 278 --------------AIETAAVEKKDCLCFIEAIVHKDDTGKELLKWGSRVSAANNR 319 (324)
Q Consensus 278 --------------al~~a~~~~~~~p~lIeV~id~~~~~~~~~~~~~~~~~~~~~ 319 (324)
+++.+. ...+++.+|||+++..|.|+.|..++....+.|++
T Consensus 502 ~~~~~~~~~~~l~~~~~~~~-~~~~~i~lIEv~lp~~D~P~~L~~~~~~~a~~n~k 556 (557)
T COG3961 502 EAKFRATTGEELALALDVAF-ANNDRIRLIEVMLPVLDAPELLIDQAKATAAQNNK 556 (557)
T ss_pred eEEEeecChHHHHHHHHHHh-cCCCceEEEEEecCcccCCHHHHHHHHhhhhhhcC
Confidence 555553 46779999999999999999999999998888654
No 3
>PLN02573 pyruvate decarboxylase
Probab=100.00 E-value=1.1e-60 Score=485.90 Aligned_cols=317 Identities=67% Similarity=1.037 Sum_probs=257.4
Q ss_pred CcCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcCceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh--
Q 038651 7 SSSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARAVGAYVVTFIVGRLSIINAIAGAYSENFPAATITA-- 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~-- 83 (324)
..+||+ +++|+|+|.++++|++|.||||++|+||||||+|+||+|||++|+|||++|++|||++||.|++|||+|++
T Consensus 35 FGvpG~~~~~l~dal~~~~~i~~i~~rhE~~A~~mAdgyaR~tg~gv~~~t~GpG~~n~~~gla~A~~d~~Pvl~I~G~~ 114 (578)
T PLN02573 35 FSVPGDFNLTLLDHLIAEPGLNLIGCCNELNAGYAADGYARARGVGACVVTFTVGGLSVLNAIAGAYSENLPVICIVGGP 114 (578)
T ss_pred EECCCCchHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHhCCCeEEEecCccHHHHHHHHHHHHHhCCCEEEEECCC
Confidence 368999 99999999754579999999999999999999999999999999999999999999999999999999941
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~itk~s~~v~~~~~~~~~l~~A~~~A~~~~gPV~l~iP~Dv~~~~~~~~~~~ 194 (578)
T PLN02573 115 NSNDYGTNRILHHTIGLPDFSQELRCFQTVTCYQAVINNLEDAHELIDTAISTALKESKPVYISVSCNLAAIPHPTFSRE 194 (578)
T ss_pred ChhhhhcCceeeeecCCCChHHHHHHhhceEEEEEEeCCHHHHHHHHHHHHHHHHhcCCCEEEEeehhhhcCccccccCC
Confidence
Q ss_pred --------------------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc----------
Q 038651 84 --------------------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM---------- 127 (324)
Q Consensus 84 --------------------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~---------- 127 (324)
|++||||+|++|+|++++++.+++++|||++|+||+||++|||+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~a~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~~~PV~tt~~gkg~~pe~hpl~~G 274 (578)
T PLN02573 195 PVPFFLTPRLSNKMSLEAAVEAAAEFLNKAVKPVLVGGPKLRVAKACKAFVELADASGYPVAVMPSAKGLVPEHHPHFIG 274 (578)
T ss_pred CCCcccccCCCChHHHHHHHHHHHHHHHhCCCCEEEEChhhcccchHHHHHHHHHHhCCCEEECcccCCCCCCcCCCceE
Confidence 78899999999999999999999999999999999999999997
Q ss_pred -------------cccCCcEEEEEcCccCCcccccccccCCCC-EEEEcCCccccccCCChh-----hHHHHHHHh----
Q 038651 128 -------------IVEFADAYIFVESIFNDYSSVGYSLLLNKK-AILMQPDRIVVANGLLLP-----NRNTSAYES---- 184 (324)
Q Consensus 128 -------------~l~~aDlvl~lG~~~~~~~t~~~~~~~~~~-iI~id~d~~~i~~~~~~~-----d~l~~~~~~---- 184 (324)
++++|||||+||++|+++++++|+.+.+++ +||||+|+.+++++..+. ++++++.+.
T Consensus 275 ~~~G~~~~~~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~~~~~I~id~d~~~i~~~~~~~~~~~~~~l~~L~~~l~~~ 354 (578)
T PLN02573 275 TYWGAVSTPFCAEIVESADAYLFAGPIFNDYSSVGYSLLLKKEKAIIVQPDRVTIGNGPAFGCVLMKDFLEALAKRVKKN 354 (578)
T ss_pred EeeCCCCCHHHHHHHHhCCEEEEECCccCCcccccccccCCCCcEEEEeCCEEEECCcceECCcCHHHHHHHHHHHhhcc
Confidence 568999999999999998887665444444 999999999998321111 334333211
Q ss_pred ---h---hhccCCCC------C--CC----------CCCCCC------------------------CE------------
Q 038651 185 ---Y---HRIYVPHG------I--PL----------KSNAHE------------------------PL------------ 204 (324)
Q Consensus 185 ---~---~~~~~~~~------~--~~----------~~~~~~------------------------~l------------ 204 (324)
| ++...... . .. ..-+.+ .+
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~iiv~D~G~~~~~~~~~~~~~~~~~~~~~~~gsmG~gl 434 (578)
T PLN02573 355 TTAYENYKRIFVPEGEPLKSEPGEPLRVNVLFKHIQKMLSGDTAVIAETGDSWFNCQKLKLPEGCGYEFQMQYGSIGWSV 434 (578)
T ss_pred ccccccccccccCcccCCCCCCCCccCHHHHHHHHHHhcCCCCEEEEecccchhhHHhccCCCCCeEEeecchhhhhhhh
Confidence 1 11000000 0 00 000000 00
Q ss_pred -------EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhhCCCCCCCCCCCHHHHHHHHH-
Q 038651 205 -------MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIHDGPYNVIENWNYTGLVEAFQ- 276 (324)
Q Consensus 205 -------~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~~~~~~l~~~df~~lA~a~G- 276 (324)
...|++.||+.+||++|.|+. |||+||+||++|+++||+||++|++++..++..|+++++|||+++|++||
T Consensus 435 paaiGa~lA~p~r~vv~i~GDG~f~m~~-~EL~Ta~r~~lpvv~vV~NN~~yg~~~~~~~~~~~~~~~~d~~~lA~a~G~ 513 (578)
T PLN02573 435 GATLGYAQAAPDKRVIACIGDGSFQVTA-QDVSTMIRCGQKSIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVDAIHN 513 (578)
T ss_pred hHHHHHHHhCCCCceEEEEeccHHHhHH-HHHHHHHHcCCCCEEEEEeCCceeEEEeecccCccccCCCCHHHHHHHhcC
Confidence 345677788888888888875 99999999999999999999999998876655677788899999999996
Q ss_pred ----H-------------HHHHhHHhCCCCeEEEEEEecCCCCcHHHHHHHHHhhhhcCCCCCCC
Q 038651 277 ----N-------------AIETAAVEKKDCLCFIEAIVHKDDTGKELLKWGSRVSAANNRPPNPQ 324 (324)
Q Consensus 277 ----~-------------al~~a~~~~~~~p~lIeV~id~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
+ +|++|+..++++|+||||++++++.++.+..+..+++..+..+++||
T Consensus 514 ~~g~~~~~~V~~~~eL~~al~~a~~~~~~~p~lieV~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (578)
T PLN02573 514 GEGKCWTAKVRTEEELIEAIATATGEKKDCLCFIEVIVHKDDTSKELLEWGSRVSAANSRPPNPQ 578 (578)
T ss_pred cCCceeEEEecCHHHHHHHHHHHHhhCCCCcEEEEEEcCcCCCCHHHHHHHHHHhhcccCCCCCC
Confidence 5 66666411369999999999999999999999999999987779987
No 4
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=100.00 E-value=4.5e-59 Score=470.97 Aligned_cols=299 Identities=31% Similarity=0.420 Sum_probs=245.2
Q ss_pred CcCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcCceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh--
Q 038651 7 SSSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARAVGAYVVTFIVGRLSIINAIAGAYSENFPAATITA-- 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~-- 83 (324)
..+||+ +++|+|++.++++|++|.+|||++|+||||||+|+||+|||++|+|||++|++|||++||.|++|||+|++
T Consensus 20 FG~pG~~~~~l~dal~~~~~i~~v~~rhE~~A~~mAdgyar~tg~gv~~~t~GPG~~n~~~gla~A~~d~~Pvl~I~G~~ 99 (539)
T TIGR03393 20 FGVPGDYNLQFLDHVIDSPDICWVGCANELNAAYAADGYARCKGAAALLTTFGVGELSAINGIAGSYAEHLPVIHIVGAP 99 (539)
T ss_pred EECCCCchHHHHHHHhhCCCCcEeccCCcccHHHHhhhhhhhcCceEEEEecCccHHHHhhHHHHHhhccCCEEEEECCC
Confidence 368999 99999999765689999999999999999999999999999999999999999999999999999999941
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~q~~~~~~~~itk~~~~~~~~~~~~~i~~a~~~A~~~~gPv~l~iP~Dv~~~~~~~~~~~~ 179 (539)
T TIGR03393 100 GTAAQQRGELLHHTLGDGDFRHFYRMAAEVTVAQAVLTEQNATAEIDRVITTALRERRPGYLMLPVDVAAKAVTPPVNPL 179 (539)
T ss_pred CcchhhcCceeeeecCCCchHHHHHHhhceEEEEEEeChhhhHHHHHHHHHHHHhcCCCEEEEecccccCCccCCCCccc
Confidence
Q ss_pred ----------------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc--------------
Q 038651 84 ----------------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM-------------- 127 (324)
Q Consensus 84 ----------------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~-------------- 127 (324)
|++||||+|++|+|+.++++.+++++|+|++++||+||++|||+
T Consensus 180 ~~~~~~~~~~~~~~~i~~a~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~~~~~hpl~lG~~~g 259 (539)
T TIGR03393 180 VTHKPAHADSALRAFRDAAENKLAMAKRVSLLADFLALRHGLKHALQKWVKEVPMPHATLLMGKGILDEQQAGFYGTYSG 259 (539)
T ss_pred CcCCCCCChHHHHHHHHHHHHHHHhCCCCEEEeChhhcccChHHHHHHHHHHhCCCEEECcccCccccCcCCCeEEEEeC
Confidence 78899999999999999999999999999999999999999998
Q ss_pred ---------cccCCcEEEEEcCccCCcccccccccCCCC-EEEEcCCccccccCCChh-----hH---HHHHHH----hh
Q 038651 128 ---------IVEFADAYIFVESIFNDYSSVGYSLLLNKK-AILMQPDRIVVANGLLLP-----NR---NTSAYE----SY 185 (324)
Q Consensus 128 ---------~l~~aDlvl~lG~~~~~~~t~~~~~~~~~~-iI~id~d~~~i~~~~~~~-----d~---l~~~~~----~~ 185 (324)
++++|||||+||++|+++.+++|...++.+ +||||+|+.+++ +...+ |. |+++++ .|
T Consensus 260 ~~~~~~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~~~~~I~id~~~~~~~-~~~~~~~~i~D~~~~l~~l~~~l~~~~ 338 (539)
T TIGR03393 260 SASTGAVKEAIEGADAVICVGVRFTDTITAGFTHQLTPEQTIDVQPHAARVG-NVWFTGIPMNDAIETLVELCEHAGLMW 338 (539)
T ss_pred CCCCHHHHHHHhhCCEEEEECCcccccccceeeccCCcccEEEEcCCeEEEC-ceEeCCcCHHHHHHHHHHHhhhccccc
Confidence 678999999999999998887665323334 999999999887 32222 32 333222 12
Q ss_pred hhc--cC----CCC-CCC----------C-----------------------C-CCCCCE-------------------E
Q 038651 186 HRI--YV----PHG-IPL----------K-----------------------S-NAHEPL-------------------M 205 (324)
Q Consensus 186 ~~~--~~----~~~-~~~----------~-----------------------~-~~~~~l-------------------~ 205 (324)
... .. ... ... . . .+...+ +
T Consensus 339 ~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~iiv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~l 418 (539)
T TIGR03393 339 SSSGAIPFPQPDESRSALSQENFWQTLQTFLRPGDIILADQGTSAFGAADLRLPADVNFIVQPLWGSIGYTLPAAFGAQT 418 (539)
T ss_pred ccccccCcCCCCCCCCccCHHHHHHHHHHhcCCCCEEEEccCchhhhhhhccCCCCCeEEechhhhhhhhHHHHHHHHHh
Confidence 110 00 000 000 0 0 000001 5
Q ss_pred ecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhh--CCCCCCCCCCCHHHHHHHHHH------
Q 038651 206 LSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIH--DGPYNVIENWNYTGLVEAFQN------ 277 (324)
Q Consensus 206 ~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~--~~~~~~l~~~df~~lA~a~G~------ 277 (324)
..|+..|++.+||++|.|+. |||+|++||++|+++|||||++|++++..+ +..|+++++|||+++|++||+
T Consensus 419 a~p~~~vv~i~GDG~f~m~~-~EL~Ta~~~~lpi~~vV~NN~~y~~i~~~~~~~~~~~~~~~~df~~la~a~G~~~~~~~ 497 (539)
T TIGR03393 419 ACPNRRVILLIGDGSAQLTI-QELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRYNDIALWNWTHLPQALSLDPQSEC 497 (539)
T ss_pred cCCCCCeEEEEcCcHHHhHH-HHHHHHHHcCCCCEEEEEeCCceEEEEeecCCCCCcCcCCCCCHHHHHHHcCCCCccce
Confidence 56888899999999999985 999999999999999999999999998665 346788889999999999983
Q ss_pred -----------HHHHhHHhCCCCeEEEEEEecCCCCcHHHHHH
Q 038651 278 -----------AIETAAVEKKDCLCFIEAIVHKDDTGKELLKW 309 (324)
Q Consensus 278 -----------al~~a~~~~~~~p~lIeV~id~~~~~~~~~~~ 309 (324)
+|++++ ++++|+||||+++++++|+.+.++
T Consensus 498 ~~v~~~~el~~al~~a~--~~~~p~liev~i~~~~~p~~~~~~ 538 (539)
T TIGR03393 498 WRVSEAEQLADVLEKVA--AHERLSLIEVVLPKADIPPLLGAL 538 (539)
T ss_pred EEeccHHHHHHHHHHHh--ccCCeEEEEEEcCcccCCHHHHhc
Confidence 777774 789999999999999999988765
No 5
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=100.00 E-value=6.8e-59 Score=473.73 Aligned_cols=295 Identities=16% Similarity=0.167 Sum_probs=236.5
Q ss_pred cCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhc-C-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh-
Q 038651 8 SSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARAR-A-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA- 83 (324)
Q Consensus 8 ~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~t-g-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~- 83 (324)
.+||+ +++|+|+|.++++|++|.+|||++|+||||||||+| | +|||++|+|||++|++|||++||.|++|||+|++
T Consensus 23 GvpG~~~~~l~dal~~~~~i~~V~~rhE~~A~~mAdgyaR~t~g~~gv~~~t~GpG~~N~~~gla~A~~~~~Pvl~I~G~ 102 (588)
T TIGR01504 23 GVPGAAINPFYSALKAHGGIRHILARHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTDMITGLYSASADSIPILCITGQ 102 (588)
T ss_pred ECCCCCcHHHHHHHhhcCCCcEEeeCCHHHHHHHHHHHHHhcCCCeEEEEECCCccHHHHHHHHHHHhhcCCCEEEEecC
Confidence 58999 999999997655799999999999999999999999 8 9999999999999999999999999999999952
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 103 ~~~~~~~~~~~q~~D~~~~~~~vtk~~~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~ 182 (588)
T TIGR01504 103 APRARLHKEDFQAVDIAAIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGRPGPVLIDLPFDVQVAEIEFDPDTYEPLPV 182 (588)
T ss_pred CCccccCCCcccccCHHHHhhhhceEEEEcCCHHHHHHHHHHHHHHHccCCCCeEEEEeCcchhhcccCCcccccccccC
Confidence
Q ss_pred ----------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc--------------------
Q 038651 84 ----------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM-------------------- 127 (324)
Q Consensus 84 ----------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~-------------------- 127 (324)
|++||||+|++|+|+.++++.+++.+|+|++|+||+||++|||+
T Consensus 183 ~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~~g~PV~tt~~gkg~~p~~hpl~~G~~g~~~~~~~ 262 (588)
T TIGR01504 183 YKPAATRAQIEKAVEMLNAAERPLIVAGGGVINADAADLLQEFAELTGVPVIPTLMGWGCIPDDHELMAGMVGLQTSHRY 262 (588)
T ss_pred CCCCCCHHHHHHHHHHHHhCCCcEEEECCCcchhhhHHHHHHHHHHhCCCeEEcCccCCCCCCCChhhCcCCCCCCCcHH
Confidence 78899999999999999999999999999999999999999998
Q ss_pred ---cccCCcEEEEEcCccCCcccccccccCCCC-EEEEcCCccccccCCChh------h---HHHHHHH-----------
Q 038651 128 ---IVEFADAYIFVESIFNDYSSVGYSLLLNKK-AILMQPDRIVVANGLLLP------N---RNTSAYE----------- 183 (324)
Q Consensus 128 ---~l~~aDlvl~lG~~~~~~~t~~~~~~~~~~-iI~id~d~~~i~~~~~~~------d---~l~~~~~----------- 183 (324)
++++|||||+||++++++.++.|..+.++. +||||.|+.+++ ++..+ | +|+++.+
T Consensus 263 a~~~l~~aD~iL~lG~~l~~~~t~~~~~~~~~~~~I~id~d~~~i~-~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~ 341 (588)
T TIGR01504 263 GNATLLESDFVFGIGNRWANRHTGSVDVYTEGRKFVHVDIEPTQIG-RVFAPDLGIVSDAKAALKLLVEVAQELKKAGRL 341 (588)
T ss_pred HHHHHHhCCEEEEECCCCCccccCcccccCCCCeEEEeeCCHHHhc-CcCCCCeEEEeCHHHHHHHHHHHhhhhcccccc
Confidence 567899999999999988887665444444 999999999998 32222 3 2322211
Q ss_pred ----hhhh-------ccCC----CCCCC----------CC-------------------------CCCCCE---------
Q 038651 184 ----SYHR-------IYVP----HGIPL----------KS-------------------------NAHEPL--------- 204 (324)
Q Consensus 184 ----~~~~-------~~~~----~~~~~----------~~-------------------------~~~~~l--------- 204 (324)
.|.+ .+.. ..... +. .|...+
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~l~~~l~~d~ivv~D~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG 421 (588)
T TIGR01504 342 PDRSEWAADCQQRKRTLLRKTHFDNVPVKPQRVYEEMNKAFGRDVCYVTTIGLSQIAGAQMLHVYKPRHWINCGQAGPLG 421 (588)
T ss_pred cchHHHHHHHHHHHHhCcccccCCCCCcCHHHHHHHHHHhCCCCCEEEECCcHHHHHHHHhccccCCCcEEeCCcccccc
Confidence 1210 0000 00000 00 000000
Q ss_pred ----------EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhhC----CCC-----C----
Q 038651 205 ----------MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIHD----GPY-----N---- 261 (324)
Q Consensus 205 ----------~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~----~~~-----~---- 261 (324)
+..|+..||+.+||++|.|+. |||+||+||++|+++||+||++|++++..|. ..+ .
T Consensus 422 ~glpaaiGa~lA~pdr~Vv~i~GDG~f~m~~-~EL~Ta~r~~lpvv~iV~NN~~yg~i~~~q~~~~~~~~~~~~~~~~~~ 500 (588)
T TIGR01504 422 WTIPAALGVCAADPKRNVVALSGDYDFQFMI-EELAVGAQHNIPYIHVLVNNAYLGLIRQAQRAFDMDYCVQLAFENINS 500 (588)
T ss_pred chHhHHHhhhhhCCCCcEEEEEcchHhhccH-HHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcccccceeecccccc
Confidence 456788899999999999985 9999999999999999999999999987652 111 1
Q ss_pred ---CCCCCCHHHHHHHHHH-------------HHHHhHHh---CCCCeEEEEEEecCCCCcHH
Q 038651 262 ---VIENWNYTGLVEAFQN-------------AIETAAVE---KKDCLCFIEAIVHKDDTGKE 305 (324)
Q Consensus 262 ---~l~~~df~~lA~a~G~-------------al~~a~~~---~~~~p~lIeV~id~~~~~~~ 305 (324)
++.+|||+++||+||+ +|++++ . ++++|+||||++++++.|+.
T Consensus 501 ~~~~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~a~-~~~~~~~~p~lIeV~i~~~~~~~~ 562 (588)
T TIGR01504 501 SEVNGYGVDHVKVAEGLGCKAIRVFKPEEIAPAFEQAK-ALMAEHRVPVVVEVILERVTNISM 562 (588)
T ss_pred ccccCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHH-hhcccCCCcEEEEEEeccccCCCC
Confidence 1236999999999998 777764 2 37999999999999998754
No 6
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=100.00 E-value=4.7e-58 Score=462.83 Aligned_cols=301 Identities=19% Similarity=0.293 Sum_probs=238.7
Q ss_pred CcCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh-
Q 038651 7 SSSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA- 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~- 83 (324)
..+||+ +++|+|++.+.++|++|.+|||++|+||||||||+|| +|||++|+|||++|++|||++||.|++|||+||+
T Consensus 19 FGvpG~~~~~l~~al~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~gia~A~~~~~Pvl~i~g~ 98 (535)
T TIGR03394 19 FGIPGDFALPFFKVIEETGILPLHTLSHEPAVGFAADAAARYRGTLGVAAVTYGAGAFNMVNAIAGAYAEKSPVVVISGA 98 (535)
T ss_pred EECCCcccHHHHHHHhhCCCCeEEcccCcchHHHHHhHHHHhhCCceEEEEecchHHHhhhhHHHHHhhcCCCEEEEECC
Confidence 368999 9999999987545999999999999999999999998 9999999999999999999999999999999942
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vtk~~~~v~~~~~~~~~~~~A~~~a~~~~gPv~i~iP~Dv~~~~~~~~~~~~ 178 (535)
T TIGR03394 99 PGTTEGNAGLLLHHQGRTLDSQFQVFKEVTCDQAVLDDPATAPAEIARVLGSARELSRPVYLEIPRDMVNAEVEPVPDDP 178 (535)
T ss_pred CCcccccCCceeEeeccchHHHHHhhhhheEEEEEeCChHHhHHHHHHHHHHHHHCCCCEEEEechhhccCccCCCCCCC
Confidence
Q ss_pred -------------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc-----------------
Q 038651 84 -------------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM----------------- 127 (324)
Q Consensus 84 -------------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~----------------- 127 (324)
|++||||+|++|+|+.++++.+++++|||++|+||+||++|||+
T Consensus 179 ~~~~~~~~~~~~v~~~~~~l~~AkrPvi~~G~g~~~~~a~~~l~~lae~~~~pv~tT~~gkg~~pe~hpl~~G~~~G~~~ 258 (535)
T TIGR03394 179 AWPVDRDALDACADEVLARMRSATSPVMMVCVEVRRYGLEAKVAELAQRLGVPVVTTFMGRGLLADAPTPPLGTYLGVAG 258 (535)
T ss_pred CCCCChHHHHHHHHHHHHHHHhCCCCEEEEChhhcccCcHHHHHHHHHHhCCCEEEccccCcCCCCCCccccccccCCCC
Confidence 78999999999999999999999999999999999999999998
Q ss_pred ------cccCCcEEEEEcCccCCcccccccccCCCC-EEEEcCCccccccCCChh-----hH---HHHHHHhh-------
Q 038651 128 ------IVEFADAYIFVESIFNDYSSVGYSLLLNKK-AILMQPDRIVVANGLLLP-----NR---NTSAYESY------- 185 (324)
Q Consensus 128 ------~l~~aDlvl~lG~~~~~~~t~~~~~~~~~~-iI~id~d~~~i~~~~~~~-----d~---l~~~~~~~------- 185 (324)
++++|||||+||++|++++++.+....++. +||||.|+.+++ +.... |+ |+++.+..
T Consensus 259 ~~~~~~~l~~aDliL~iG~~l~~~~~~~~~~~~~~~~~I~id~~~~~~~-~~~~~~~~i~d~~~~L~~l~~~~~~~~~~~ 337 (535)
T TIGR03394 259 DAELSRLVEESDGLLLLGVILSDTNFAVSQRKIDLRRTIHAFDRAVTLG-YHVYADIPLAGLVDALLALLCGLPPSDRTT 337 (535)
T ss_pred CHHHHHHHHhCCEEEEECCcccccccccccccCCCCcEEEEeCCEEEEC-CeeECCccHHHHHHHHHHhhhccccccccc
Confidence 678999999999999887654333333334 999999999987 32222 32 22221110
Q ss_pred -hhc---cCCC--C--CC-------------CCCC--------------------CCCCE-------------------E
Q 038651 186 -HRI---YVPH--G--IP-------------LKSN--------------------AHEPL-------------------M 205 (324)
Q Consensus 186 -~~~---~~~~--~--~~-------------~~~~--------------------~~~~l-------------------~ 205 (324)
... +... . .+ .+.. +...+ .
T Consensus 338 ~~~~~~~~~~~~~~~~~~i~p~~~~~~l~~~l~~~~~~ii~~D~G~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~l 417 (535)
T TIGR03394 338 RGKGPHAYPRGLQADAEPIAPMDIARAVNDRFARHGQMPLAADIGDCLFTAMDMDDAGLMAPGYYAGMGFGVPAGIGAQC 417 (535)
T ss_pred ccccccccccccCCCCCCcCHHHHHHHHHHHhCCCCCEEEEEccCHHHHHHHhcCCCcEECcCccchhhhHHHHHHHHHh
Confidence 000 0000 0 00 0000 00000 2
Q ss_pred ecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhh-CCCCCCCCCCCHHHHHHHHHH-------
Q 038651 206 LSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIH-DGPYNVIENWNYTGLVEAFQN------- 277 (324)
Q Consensus 206 ~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~-~~~~~~l~~~df~~lA~a~G~------- 277 (324)
..++.+ |+.+||++|.|+. |||+|++||++|+++||+||++|+++|..| ...|+++.+|||+++|++||+
T Consensus 418 A~~~r~-v~i~GDG~f~m~~-~EL~Ta~r~~lpv~~vV~NN~~y~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~ 495 (535)
T TIGR03394 418 TSGKRI-LTLVGDGAFQMTG-WELGNCRRLGIDPIVILFNNASWEMLRVFQPESAFNDLDDWRFADMAAGMGGDGVRVRT 495 (535)
T ss_pred CCCCCe-EEEEeChHHHhHH-HHHHHHHHcCCCcEEEEEECCccceeehhccCCCcccCCCCCHHHHHHHcCCCceEeCC
Confidence 334444 4578888888874 999999999999999999999999999877 345788889999999999999
Q ss_pred ------HHHHhHHhCCCCeEEEEEEecCCCCcHHHHHHHH
Q 038651 278 ------AIETAAVEKKDCLCFIEAIVHKDDTGKELLKWGS 311 (324)
Q Consensus 278 ------al~~a~~~~~~~p~lIeV~id~~~~~~~~~~~~~ 311 (324)
+|++++ ...++|+||||++|++++|+.+.++.+
T Consensus 496 ~~eL~~al~~a~-~~~~~p~lIev~i~~~~~~~~~~~~~~ 534 (535)
T TIGR03394 496 RAELAAALDKAF-ATRGRFQLIEAMLPRGVLSDTLARFVQ 534 (535)
T ss_pred HHHHHHHHHHHH-hcCCCeEEEEEECCcccCCHHHHHHhc
Confidence 777764 234569999999999999999988754
No 7
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=8.7e-58 Score=464.51 Aligned_cols=294 Identities=21% Similarity=0.233 Sum_probs=235.8
Q ss_pred CcCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh-
Q 038651 7 SSSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA- 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~- 83 (324)
..+||+ +++|+|+|.++++|++|.+|||++|+||||||+|+|| +|||++|+|||++|++|||++||.|++|||+|++
T Consensus 23 FgvpG~~~~~l~~al~~~~~i~~v~~rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n~l~gia~A~~~~~Pvl~i~G~ 102 (572)
T PRK08979 23 FGYPGGSVLDIYDALHEKSGIEHILVRHEQAAVHMADGYARATGKVGVVLVTSGPGATNTITGIATAYMDSIPMVVLSGQ 102 (572)
T ss_pred EEcCCcchHHHHHHHhhcCCCeEEEeCcHHHHHHHHHHHHHHhCCCeEEEECCCchHhHHHHHHHHHhhcCCCEEEEecC
Confidence 468999 9999999976557999999999999999999999999 9999999999999999999999999999999942
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 103 ~~~~~~~~~~~q~~d~~~~~~~itk~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~ 182 (572)
T PRK08979 103 VPSNLIGNDAFQECDMIGISRPVVKHSFLVKDAEDIPEIIKKAFYIASTGRPGPVVIDLPKDCLNPAILHPYEYPESIKM 182 (572)
T ss_pred CCccccCCCCCcccchhHHhhhceeEEEecCCHHHHHHHHHHHHHHHhCCCCCcEEEecCHhHhhhhhcccccCCccccc
Confidence
Q ss_pred --------------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc----------------
Q 038651 84 --------------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM---------------- 127 (324)
Q Consensus 84 --------------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~---------------- 127 (324)
|++||||+|++|+|++++++.++|++|+|++|+||+||++|||+
T Consensus 183 ~~~~p~~~~~~~~i~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~~~~~hp~~~G~~G~~~ 262 (572)
T PRK08979 183 RSYNPTTSGHKGQIKRGLQALLAAKKPVLYVGGGAIISGADKQILQLAEKLNLPVVSTLMGLGAFPGTHKNSLGMLGMHG 262 (572)
T ss_pred ccCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccChHHHHHHHHHHhCCCEEEcccccccCCCCCcccccCCccCC
Confidence 78899999999999999999999999999999999999999998
Q ss_pred ------cccCCcEEEEEcCccCCcccccccccCCCC-EEEEcCCccccccCCChh------h---HHHHHHH--------
Q 038651 128 ------IVEFADAYIFVESIFNDYSSVGYSLLLNKK-AILMQPDRIVVANGLLLP------N---RNTSAYE-------- 183 (324)
Q Consensus 128 ------~l~~aDlvl~lG~~~~~~~t~~~~~~~~~~-iI~id~d~~~i~~~~~~~------d---~l~~~~~-------- 183 (324)
++++|||||+||++++++.++.|..+.++. +||||.|+.+++ +.... | +|+++.+
T Consensus 263 ~~~~~~~~~~aD~vl~vG~~~~~~~~~~~~~~~~~~~~i~id~d~~~i~-~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~ 341 (572)
T PRK08979 263 RYEANMAMHNADLIFGIGVRFDDRTTNNLEKYCPNATILHIDIDPSSIS-KTVRVDIPIVGSADKVLDSMLALLDESGET 341 (572)
T ss_pred CHHHHHHHHhCCEEEEEcCCCCccccCchhhcCCCCeEEEEECCHHHhC-CccCCceEEecCHHHHHHHHHHhhhhcccc
Confidence 678999999999999998877665444444 999999999998 32222 2 2333211
Q ss_pred -------hhh-------hccC----CCCCCC----------CCCCCC-------------------------C-------
Q 038651 184 -------SYH-------RIYV----PHGIPL----------KSNAHE-------------------------P------- 203 (324)
Q Consensus 184 -------~~~-------~~~~----~~~~~~----------~~~~~~-------------------------~------- 203 (324)
.|. ..+. ...... +..+.+ .
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~g 421 (572)
T PRK08979 342 NDEAAIASWWNEIEVWRSRNCLAYDKSSERIKPQQVIETLYKLTNGDAYVASDVGQHQMFAALYYPFDKPRRWINSGGLG 421 (572)
T ss_pred ccccchHHHHHHHHHHHHhCchhccCCCCCcCHHHHHHHHHHhcCCCeEEEECCcHHHHHHHHhcCcCCCCeEEccCCcc
Confidence 111 0000 000000 000000 0
Q ss_pred -E-----------EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhh----CCCC--CCC-C
Q 038651 204 -L-----------MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIH----DGPY--NVI-E 264 (324)
Q Consensus 204 -l-----------~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~----~~~~--~~l-~ 264 (324)
+ ...|+..|++.+||++|.|+. |||+|++||++|+++||+||++|++++..| .+.+ ..+ .
T Consensus 422 ~mG~glpaaiGa~la~p~~~vv~i~GDG~f~m~~-~EL~Ta~r~~lpv~~vV~NN~~y~~i~~~q~~~~~~~~~~~~~~~ 500 (572)
T PRK08979 422 TMGFGLPAAMGVKFAMPDETVVCVTGDGSIQMNI-QELSTALQYDIPVKIINLNNRFLGMVKQWQDMIYQGRHSHSYMDS 500 (572)
T ss_pred cccchhhHHHhhhhhCCCCeEEEEEcchHhhccH-HHHHHHHHcCCCeEEEEEeCCccHHHHHHHHHHhCCcccccCCCC
Confidence 0 456788899999999999985 999999999999999999999999998665 2222 222 4
Q ss_pred CCCHHHHHHHHHH-------------HHHHhHHhC-CCCeEEEEEEecCCCCcH
Q 038651 265 NWNYTGLVEAFQN-------------AIETAAVEK-KDCLCFIEAIVHKDDTGK 304 (324)
Q Consensus 265 ~~df~~lA~a~G~-------------al~~a~~~~-~~~p~lIeV~id~~~~~~ 304 (324)
++||+++|++||+ +|++++ + .++|+||||++++++.++
T Consensus 501 ~~d~~~~A~a~G~~~~~v~~~~eL~~al~~a~--~~~~~p~lIev~i~~~~~~~ 552 (572)
T PRK08979 501 VPDFAKIAEAYGHVGIRISDPDELESGLEKAL--AMKDRLVFVDINVDETEHVY 552 (572)
T ss_pred CCCHHHHHHHCCCeEEEECCHHHHHHHHHHHH--hcCCCcEEEEEEeCCccccC
Confidence 6899999999998 777774 4 499999999999876443
No 8
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=1.2e-57 Score=463.67 Aligned_cols=294 Identities=20% Similarity=0.239 Sum_probs=235.6
Q ss_pred CcCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh-
Q 038651 7 SSSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA- 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~- 83 (324)
..+||+ +++|+|++.++++|++|.+|||++|+||||||+|+|| +|||++|+|||++|++|||++||.|++|||+|++
T Consensus 23 FgvpG~~~~~l~d~l~~~~~i~~i~~rhE~~A~~mAdgYar~tg~~gv~~~t~GPG~~n~l~gi~~A~~~~~Pvl~i~G~ 102 (574)
T PRK07979 23 FGYPGGAVLDIYDALHTVGGIDHVLVRHEQAAVHMADGLARATGEVGVVLVTSGPGATNAITGIATAYMDSIPLVVLSGQ 102 (574)
T ss_pred EEccCcchHHHHHHHHhcCCceEEEeCcHHHHHHHHHHHHHHhCCceEEEECCCccHhhhHHHHHHHhhcCCCEEEEECC
Confidence 368999 9999999976457999999999999999999999999 9999999999999999999999999999999942
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 103 ~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~~GPv~l~iP~Dv~~~~~~~~~~~~~~~~~ 182 (574)
T PRK07979 103 VATSLIGYDAFQECDMVGISRPVVKHSFLVKQTEDIPQVLKKAFWLAASGRPGPVVVDLPKDILNPANKLPYVWPESVSM 182 (574)
T ss_pred CChhccCCCCCceecHHHHhhcccceEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChhhhhhhhccccccCccccc
Confidence
Q ss_pred --------------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc----------------
Q 038651 84 --------------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM---------------- 127 (324)
Q Consensus 84 --------------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~---------------- 127 (324)
|++||||+|++|+|++++++.++|++|+|++|+||+||++|||+
T Consensus 183 ~~~~~~~~~~~~~i~~a~~~L~~A~rPvi~~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~~p~~hp~~~G~~G~~~ 262 (574)
T PRK07979 183 RSYNPTTQGHKGQIKRALQTLVAAKKPVVYVGGGAINAACHQQLKELVEKLNLPVVSSLMGLGAFPATHRQSLGMLGMHG 262 (574)
T ss_pred ccCCCCCCCCHHHHHHHHHHHHcCCCCEEEECCCccccchHHHHHHHHHHhCCCEEEccccCCCCCCCCcccccCCcCCC
Confidence 78899999999999999999999999999999999999999998
Q ss_pred ------cccCCcEEEEEcCccCCcccccccccCCCC-EEEEcCCccccccCCChh------h---HHHHHHH--------
Q 038651 128 ------IVEFADAYIFVESIFNDYSSVGYSLLLNKK-AILMQPDRIVVANGLLLP------N---RNTSAYE-------- 183 (324)
Q Consensus 128 ------~l~~aDlvl~lG~~~~~~~t~~~~~~~~~~-iI~id~d~~~i~~~~~~~------d---~l~~~~~-------- 183 (324)
++++|||||+||++++++.++.|..+.++. +||||+|+.+++ +.... | +|+++.+
T Consensus 263 ~~~~~~~l~~aDlvl~vG~~~~~~~~~~~~~~~~~~~~i~id~d~~~i~-~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~ 341 (574)
T PRK07979 263 TYEANMTMHNADVIFAVGVRFDDRTTNNLAKYCPNATVLHIDIDPTSIS-KTVTADIPIVGDARQVLEQMLELLSQESAH 341 (574)
T ss_pred CHHHHHHHHhCCEEEEeCCCCcccccCChhhcCCCCeEEEEECCHHHhC-CcccCCeEEecCHHHHHHHHHHhhhhcccc
Confidence 678999999999999998887665444444 999999999998 32222 2 2332211
Q ss_pred -------hh-------hhccC----CCCCCC----------CC-------------------------CCCCCE------
Q 038651 184 -------SY-------HRIYV----PHGIPL----------KS-------------------------NAHEPL------ 204 (324)
Q Consensus 184 -------~~-------~~~~~----~~~~~~----------~~-------------------------~~~~~l------ 204 (324)
.| +.... ...... +. .+...+
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~ivv~d~G~~~~~~~~~~~~~~p~~~~~~~~~g 421 (574)
T PRK07979 342 QPLDEIRDWWQQIEQWRARQCLKYDTHSEKIKPQAVIETLWRLTKGDAYVTSDVGQHQMFAALYYPFDKPRRWINSGGLG 421 (574)
T ss_pred ccccchHHHHHHHHHHHHhChhhccCCCCCcCHHHHHHHHHhhcCCCEEEEeCCcHHHHHHHHhcccCCCCeEEeCCCcc
Confidence 11 10000 000000 00 000001
Q ss_pred -------------EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhhC----CCC--CCC-C
Q 038651 205 -------------MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIHD----GPY--NVI-E 264 (324)
Q Consensus 205 -------------~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~----~~~--~~l-~ 264 (324)
...|++.||+.+||++|.|+. |||+||+||+||+++||+||++|++++..|. +.+ .++ +
T Consensus 422 ~mG~glpaaiGa~la~p~~~vv~i~GDG~f~m~~-~eL~Ta~r~~l~v~ivV~NN~~yg~i~~~q~~~~~~~~~~~~~~~ 500 (574)
T PRK07979 422 TMGFGLPAALGVKMALPEETVVCVTGDGSIQMNI-QELSTALQYELPVLVLNLNNRYLGMVKQWQDMIYSGRHSQSYMQS 500 (574)
T ss_pred chhhHHHHHHHHHHhCCCCeEEEEEcchhhhccH-HHHHHHHHhCCCeEEEEEeCchhhHHHHHHHHhcCCccccccCCC
Confidence 456788899999999999985 9999999999999999999999999987652 222 223 4
Q ss_pred CCCHHHHHHHHHH-------------HHHHhHHhC---CCCeEEEEEEecCCCCcH
Q 038651 265 NWNYTGLVEAFQN-------------AIETAAVEK---KDCLCFIEAIVHKDDTGK 304 (324)
Q Consensus 265 ~~df~~lA~a~G~-------------al~~a~~~~---~~~p~lIeV~id~~~~~~ 304 (324)
+|||+++|++||+ +|++++ + .++|+||||++|+++.++
T Consensus 501 ~~d~~~iA~a~G~~g~~v~~~~eL~~al~~a~--~~~~~~~p~lIeV~i~~~~~~~ 554 (574)
T PRK07979 501 LPDFVRLAEAYGHVGIQISHPDELESKLSEAL--EQVRNNRLVFVDVTVDGSEHVY 554 (574)
T ss_pred CCCHHHHHHHCCCEEEEECCHHHHHHHHHHHH--hccCCCCcEEEEEEECCccCcC
Confidence 6899999999998 777764 4 489999999999877543
No 9
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=100.00 E-value=2.6e-57 Score=458.09 Aligned_cols=295 Identities=18% Similarity=0.187 Sum_probs=237.5
Q ss_pred CcCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh-
Q 038651 7 SSSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA- 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~- 83 (324)
..+||+ +++|+|++.+ ++|++|.+|||++|+||||||||+|| +|||++|+|||++|+++||++||.|++|||+||+
T Consensus 18 Fg~pG~~~~~l~dal~~-~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l~gl~~A~~~~~Pvl~I~G~ 96 (539)
T TIGR02418 18 FGIPGAKIDRVFDALED-KGIELIVVRHEQNAAFMAQAVGRITGKPGVALVTSGPGCSNLVTGLATANSEGDPVVAIGGQ 96 (539)
T ss_pred EECCCCchHHHHHHHhh-CCCCEEEeCcHHHHHHHHHHHHHHhCCceEEEECCCCCHhHHHHHHHHHhhcCCCEEEEeCC
Confidence 368999 9999999976 58999999999999999999999999 9999999999999999999999999999999952
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 97 ~~~~~~~~~~~q~~d~~~~~~~~tk~~~~i~~~~~~~~~~~~A~~~a~~~~~GPV~l~iP~dv~~~~~~~~~~~~~~~~~ 176 (539)
T TIGR02418 97 VKRADLLKLTHQSMDNVALFRPITKYSAEVQDPDALSEVVANAFRAAESGKPGAAFVSLPQDVVDSPVSVKAIPASYAPK 176 (539)
T ss_pred CcccccccCcccccchhhhhhcceeeeeecCCHHHHHHHHHHHHHHHhcCCCCCEEEEcChhHhhCcccccccCcccCCC
Confidence
Q ss_pred ---------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc---------------------
Q 038651 84 ---------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM--------------------- 127 (324)
Q Consensus 84 ---------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~--------------------- 127 (324)
|++||||+|++|+|+.++++.+++++|+|++|+||+||++|||.
T Consensus 177 ~~~~~~~~i~~~~~~l~~A~rPvi~~G~g~~~~~a~~~l~~lae~~g~pv~tt~~gkg~i~~~~~~~~~G~~G~~~~~~~ 256 (539)
T TIGR02418 177 LGAAPDDAIDEVAEAIQNAKLPVLLLGLRASSPETTEAVRRLLKKTQLPVVETFQGAGAVSRELEDHFFGRVGLFRNQPG 256 (539)
T ss_pred CCCCCHHHHHHHHHHHHcCCCCEEEECCCcCcccHHHHHHHHHHHhCCCEEEccccCcCCCCCCChhhcccCcCCCcHHH
Confidence 78999999999999999999999999999999999999999997
Q ss_pred --cccCCcEEEEEcCccCCcccccccccCCCCEEEEcCCccccccCCChh------h---HHHHHHH------------h
Q 038651 128 --IVEFADAYIFVESIFNDYSSVGYSLLLNKKAILMQPDRIVVANGLLLP------N---RNTSAYE------------S 184 (324)
Q Consensus 128 --~l~~aDlvl~lG~~~~~~~t~~~~~~~~~~iI~id~d~~~i~~~~~~~------d---~l~~~~~------------~ 184 (324)
++++|||||++|+++.++.+..|....+.++||||.|+.+++ +.... | +|+++.+ .
T Consensus 257 ~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~i~id~d~~~~~-~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~ 335 (539)
T TIGR02418 257 DRLLKQADLVITIGYDPIEYEPRNWNSENDATIVHIDVEPAQID-NNYQPDLELVGDIASTLDLLAERIPGYELPPDALA 335 (539)
T ss_pred HHHHHhCCEEEEecCcccccCccccCcCCCCeEEEEeCChHHcC-CccCCCeEEecCHHHHHHHHHHhhccccCccchHH
Confidence 678999999999999888776665322334999999999987 32222 2 2332211 1
Q ss_pred hh-------hcc-----CCCCCCC----------C-------------------------CCCCCC--------E-----
Q 038651 185 YH-------RIY-----VPHGIPL----------K-------------------------SNAHEP--------L----- 204 (324)
Q Consensus 185 ~~-------~~~-----~~~~~~~----------~-------------------------~~~~~~--------l----- 204 (324)
|. +.. ....... . ..+... +
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~ii~~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lp 415 (539)
T TIGR02418 336 ILEDLKQQREALDRVPATLKQAHLHPLEIIKAMQAIVTDDVTVTVDMGSHYIWMARYFRSYRARHLLISNGMQTLGVALP 415 (539)
T ss_pred HHHHHHHHHHHhhhccccCCCCCcCHHHHHHHHHhhCCCCCEEEECCcHHHHHHHHhcccCCCCceecCCCccccccHHH
Confidence 10 000 0000000 0 001000 0
Q ss_pred ------EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhhCCC-----CCCCCCCCHHHHHH
Q 038651 205 ------MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIHDGP-----YNVIENWNYTGLVE 273 (324)
Q Consensus 205 ------~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~~~-----~~~l~~~df~~lA~ 273 (324)
...|++.||+.+||++|.|.. |||+|++||++|+++||+||++|++++..+... ..++++|||.++|+
T Consensus 416 aaiGa~la~~~~~vv~i~GDGsf~m~~-~eL~Ta~~~~lpi~ivV~NN~~y~~~~~~~~~~~~~~~~~~~~~~d~~~lA~ 494 (539)
T TIGR02418 416 WAIGAALVRPNTKVVSVSGDGGFLFSS-MELETAVRLKLNIVHIIWNDNGYNMVEFQEEMKYQRSSGVDFGPIDFVKYAE 494 (539)
T ss_pred HHHHHHHhCCCCcEEEEEcchhhhchH-HHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCcccccCCCCCHHHHHH
Confidence 456788899999999999985 999999999999999999999999998654221 24677899999999
Q ss_pred HHHH-------------HHHHhHHhCCCCeEEEEEEecCCCCcHHH
Q 038651 274 AFQN-------------AIETAAVEKKDCLCFIEAIVHKDDTGKEL 306 (324)
Q Consensus 274 a~G~-------------al~~a~~~~~~~p~lIeV~id~~~~~~~~ 306 (324)
+||+ +|++|+ +.++|+||||++|+++.|..|
T Consensus 495 a~G~~~~~V~~~~eL~~al~~a~--~~~~p~lIev~v~~~~~~~~~ 538 (539)
T TIGR02418 495 SFGAKGLRVESPDQLEPTLRQAM--EVEGPVVVDIPVDYSDNPKLM 538 (539)
T ss_pred HCCCeEEEECCHHHHHHHHHHHH--hCCCCEEEEEEecCccccccC
Confidence 9998 777775 789999999999998887653
No 10
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=5.8e-57 Score=460.09 Aligned_cols=292 Identities=18% Similarity=0.226 Sum_probs=234.3
Q ss_pred CcCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh-
Q 038651 7 SSSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA- 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~- 83 (324)
..+||+ +++|+|+|.+.++|++|.+|||++|+||||||+|+|| +|||++|+|||++|++|||++||.|++|||+||+
T Consensus 30 FGvpG~~~~~l~dal~~~~~i~~I~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~i~G~ 109 (595)
T PRK09107 30 FGYPGGAVLPIYDEIFQQDDIQHILVRHEQGAGHAAEGYARSTGKPGVVLVTSGPGATNAVTPLQDALMDSIPLVCITGQ 109 (595)
T ss_pred EEccCcchHHHHHHHhhcCCCeEEEECChHHHHHHHHHHHHHhCCCEEEEECCCccHhHHHHHHHHHhhcCCCEEEEEcC
Confidence 368999 9999999976558999999999999999999999999 9999999999999999999999999999999942
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 110 ~~~~~~~~~~~q~~d~~~l~~~vtk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~ 189 (595)
T PRK09107 110 VPTHLIGSDAFQECDTVGITRPCTKHNWLVKDVNDLARVIHEAFHVATSGRPGPVVVDIPKDVQFATGTYTPPQKAPVHV 189 (595)
T ss_pred CChhhcCCCCCcccchhhhhhhheEEEEEeCCHHHHHHHHHHHHHHhcCCCCceEEEecCCChhhccccccccccccccc
Confidence
Q ss_pred -------------------hhcCCCcEEEECCCCCccc--hHHHHHHHHHHhCCcEEecCCCCCc---------------
Q 038651 84 -------------------LLKAVKPAMIGGPKLSVSK--ATIAFVELADACGYAFAVMPSAKGM--------------- 127 (324)
Q Consensus 84 -------------------L~~AkrPvIl~G~g~~~~~--a~~~l~~lae~l~~Pv~tt~~gkg~--------------- 127 (324)
|++||||+|++|+|+.+++ +.+++++|+|++|+||+||++|||+
T Consensus 190 ~~~~~~~~~~~~l~~a~~~L~~A~rPvil~G~g~~~~~~~a~~~l~~lae~lg~pv~tt~~gkg~~p~~hpl~~G~~G~~ 269 (595)
T PRK09107 190 SYQPKVKGDAEAITEAVELLANAKRPVIYSGGGVINSGPEASRLLRELVELTGFPITSTLMGLGAYPASGKNWLGMLGMH 269 (595)
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCCcEEEECCcccccchhHHHHHHHHHHHHCCCEEECccccccCCCCCCcccCCCCCC
Confidence 6789999999999998875 8999999999999999999999998
Q ss_pred -------cccCCcEEEEEcCccCCcccccccccCCCC-EEEEcCCccccccCCChh------h---HHHHHHH-------
Q 038651 128 -------IVEFADAYIFVESIFNDYSSVGYSLLLNKK-AILMQPDRIVVANGLLLP------N---RNTSAYE------- 183 (324)
Q Consensus 128 -------~l~~aDlvl~lG~~~~~~~t~~~~~~~~~~-iI~id~d~~~i~~~~~~~------d---~l~~~~~------- 183 (324)
++++|||||+||++++++.++.|..+.+.. +||||.|+.+++ +.... | +|+++.+
T Consensus 270 ~~~~~~~~l~~aDlvL~lG~~~~~~~~~~~~~~~~~~~~I~id~d~~~i~-~~~~~~~~i~~D~~~~L~~L~~~l~~~~~ 348 (595)
T PRK09107 270 GTYEANMAMHDCDVMLCVGARFDDRITGRLDAFSPNSKKIHIDIDPSSIN-KNVRVDVPIIGDVGHVLEDMLRLWKARGK 348 (595)
T ss_pred ccHHHHHHHHhCCEEEEECCCCCccccCchhhcCCCCeEEEEECCHHHhC-CCCCCCeEEecCHHHHHHHHHHhhhhccc
Confidence 678999999999999988876665444444 999999999998 32211 2 2332211
Q ss_pred --------hh-------hhccC----CCCCCC----------C-CCCCCC-------------------------E----
Q 038651 184 --------SY-------HRIYV----PHGIPL----------K-SNAHEP-------------------------L---- 204 (324)
Q Consensus 184 --------~~-------~~~~~----~~~~~~----------~-~~~~~~-------------------------l---- 204 (324)
.| +.... ...... + ..+.+. +
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~ 428 (595)
T PRK09107 349 KPDKEALADWWGQIARWRARNSLAYTPSDDVIMPQYAIQRLYELTKGRDTYITTEVGQHQMWAAQFFGFEEPNRWMTSGG 428 (595)
T ss_pred cccccchHHHHHHHHHHHHhChhhccCCCCCcCHHHHHHHHHHhCCCCCeEEEECCcHHHHHHHHhcccCCCCeEEcCCC
Confidence 11 00000 000000 0 000010 0
Q ss_pred ---------------EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhh----CCCCC--CC
Q 038651 205 ---------------MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIH----DGPYN--VI 263 (324)
Q Consensus 205 ---------------~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~----~~~~~--~l 263 (324)
+..|++.||+.+||++|.|+. |||+||+||++|+++||+||++|++++..| +..+. .+
T Consensus 429 ~gsmG~glpaaiGa~lA~p~r~Vv~i~GDG~f~m~~-~EL~Ta~r~~lpvi~vV~NN~~y~~i~~~q~~~~~~~~~~~~~ 507 (595)
T PRK09107 429 LGTMGYGLPAALGVQIAHPDALVIDIAGDASIQMCI-QEMSTAVQYNLPVKIFILNNQYMGMVRQWQQLLHGNRLSHSYT 507 (595)
T ss_pred chhhhhhHHHHHHHHHhCCCCeEEEEEcCchhhccH-HHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHHhCCccccccC
Confidence 456888899999999999985 999999999999999999999999998654 22332 22
Q ss_pred -CCCCHHHHHHHHHH-------------HHHHhHHhCCCCeEEEEEEecCCCC
Q 038651 264 -ENWNYTGLVEAFQN-------------AIETAAVEKKDCLCFIEAIVHKDDT 302 (324)
Q Consensus 264 -~~~df~~lA~a~G~-------------al~~a~~~~~~~p~lIeV~id~~~~ 302 (324)
++|||+++|++||+ +|++++ +.++|+||||.+++++.
T Consensus 508 ~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~--~~~~p~lIeV~i~~~~~ 558 (595)
T PRK09107 508 EAMPDFVKLAEAYGAVGIRCEKPGDLDDAIQEMI--DVDKPVIFDCRVANLEN 558 (595)
T ss_pred CCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHH--hCCCCEEEEEEecCccc
Confidence 36899999999998 777774 68999999999998664
No 11
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=100.00 E-value=6.2e-57 Score=457.68 Aligned_cols=295 Identities=18% Similarity=0.204 Sum_probs=234.9
Q ss_pred CcCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh-
Q 038651 7 SSSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA- 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~- 83 (324)
..+||+ +++|+|+|.+.++|++|.+|||++|+||||||+|+|| +|||++|+|||++|++|||++||.|++|||+|++
T Consensus 29 FgipG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~~~gla~A~~~~~Pvl~i~G~ 108 (566)
T PRK07282 29 FGYPGGAVLPLYDAIYNFEGIRHILARHEQGALHEAEGYAKSTGKLGVAVVTSGPGATNAITGIADAMSDSVPLLVFTGQ 108 (566)
T ss_pred EecCCcchHHHHHHHhhcCCceEEEecCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEecc
Confidence 368999 9999999976568999999999999999999999999 9999999999999999999999999999999942
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 109 ~~~~~~~~~~~q~~d~~~~~~~itk~s~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~ 188 (566)
T PRK07282 109 VARAGIGKDAFQEADIVGITMPITKYNYQIRETADIPRIITEAVHIATTGRPGPVVIDLPKDVSALETDFIYDPEVNLPS 188 (566)
T ss_pred cccccCCCCCccccChhchhcCCCceeEEcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCChhhhhhhhcccccccccccC
Confidence
Q ss_pred ------------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc------------------
Q 038651 84 ------------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM------------------ 127 (324)
Q Consensus 84 ------------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~------------------ 127 (324)
|++||||+|++|+|+.++++.+++++|+|++|+||+||++|||+
T Consensus 189 ~~~~~~~~~~~i~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~l~~pv~tt~~gkg~ip~~hpl~~G~~G~~~~~ 268 (566)
T PRK07282 189 YQPTLEPNDMQIKKILKQLSKAKKPVILAGGGINYAEAATELNAFAERYQIPVVTTLLGQGTIATSHPLFLGMGGMHGSY 268 (566)
T ss_pred CCCCCCCCHHHHHHHHHHHHcCCCcEEEECCCcCcccHHHHHHHHHHHhCCCEEeccccCCCCCCCChhhcCCCCCCCCH
Confidence 78899999999999999999999999999999999999999998
Q ss_pred ----cccCCcEEEEEcCccCCcccccccccCCCC-EEEEcCCccccccCCChh------h---HHHHHHH---------h
Q 038651 128 ----IVEFADAYIFVESIFNDYSSVGYSLLLNKK-AILMQPDRIVVANGLLLP------N---RNTSAYE---------S 184 (324)
Q Consensus 128 ----~l~~aDlvl~lG~~~~~~~t~~~~~~~~~~-iI~id~d~~~i~~~~~~~------d---~l~~~~~---------~ 184 (324)
++++|||||+||++++++.++.++.+.++. +||||+|+.+++ +.... | +|+++.+ .
T Consensus 269 ~~~~~~~~aD~vl~lG~~l~~~~~~~~~~~~~~~~~i~id~d~~~i~-~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~ 347 (566)
T PRK07282 269 AANIAMTEADFMINIGSRFDDRLTGNPKTFAKNAKVAHIDIDPAEIG-KIIKTDIPVVGDAKKALQMLLAEPTVHNNTEK 347 (566)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCChhhcCCCCeEEEEECCHHHhC-CCCCCCeEEecCHHHHHHHHHHhhcccCChHH
Confidence 678999999999999988876665444444 999999999998 32221 3 2332211 1
Q ss_pred hhh-------ccC---CCCCCC----------C-------------------------CCCCCCE---------------
Q 038651 185 YHR-------IYV---PHGIPL----------K-------------------------SNAHEPL--------------- 204 (324)
Q Consensus 185 ~~~-------~~~---~~~~~~----------~-------------------------~~~~~~l--------------- 204 (324)
|.+ .+. +..... . ..+...+
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaa 427 (566)
T PRK07282 348 WIEKVTKDKNRVRSYDKKERVVQPQAVIERIGELTNGDAIVVTDVGQHQMWAAQYYPYQNERQLVTSGGLGTMGFGIPAA 427 (566)
T ss_pred HHHHHHHHHHhchhccCcCCCcCHHHHHHHHHhhcCCCeEEEECCcHHHHHHHHhcccCCCCcEecCCccccccchhhHh
Confidence 211 000 000000 0 0000001
Q ss_pred ----EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhh----CCCC--CCC-CCCCHHHHHH
Q 038651 205 ----MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIH----DGPY--NVI-ENWNYTGLVE 273 (324)
Q Consensus 205 ----~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~----~~~~--~~l-~~~df~~lA~ 273 (324)
+..|+..||+.+||++|.|+. |||+||+||++|+++||+||++|++++..| .+.+ .++ +++||+++|+
T Consensus 428 iGa~lA~p~~~Vv~i~GDG~f~m~~-~eL~Ta~~~~l~i~~vV~NN~~y~~i~~~q~~~~~~~~~~~~~~~~~d~~~lA~ 506 (566)
T PRK07282 428 IGAKIANPDKEVILFVGDGGFQMTN-QELAILNIYKVPIKVVMLNNHSLGMVRQWQESFYEGRTSESVFDTLPDFQLMAQ 506 (566)
T ss_pred heeheecCCCcEEEEEcchhhhccH-HHHHHHHHhCCCeEEEEEeCCCchHHHHHHHHHhCCCcccccCCCCCCHHHHHH
Confidence 556888899999999999985 999999999999999999999999998765 2222 234 4789999999
Q ss_pred HHHH---------HHHHhHH-hCCCCeEEEEEEecCCCCc
Q 038651 274 AFQN---------AIETAAV-EKKDCLCFIEAIVHKDDTG 303 (324)
Q Consensus 274 a~G~---------al~~a~~-~~~~~p~lIeV~id~~~~~ 303 (324)
+||+ .|++++. ..+++|+||||++++++.+
T Consensus 507 a~G~~~~~v~~~~el~~al~~~~~~~p~lIeV~v~~~~~~ 546 (566)
T PRK07282 507 AYGIKHYKFDNPETLAQDLEVITEDVPMLIEVDISRKEHV 546 (566)
T ss_pred HCCCEEEEECCHHHHHHHHHHhcCCCCEEEEEEeCCcccc
Confidence 9998 3333320 2579999999999987754
No 12
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=5.1e-57 Score=460.04 Aligned_cols=296 Identities=21% Similarity=0.234 Sum_probs=235.2
Q ss_pred CcCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh-
Q 038651 7 SSSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA- 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~- 83 (324)
..+||+ +++|+|+|.++++|++|.+|||++|+||||||+|+|| +|||++|+|||++|++|||++||.|++|||+||+
T Consensus 40 FgvpG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~AdgYar~tg~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~G~ 119 (587)
T PRK06965 40 WGYPGGAVLYIYDELYKQDKIQHVLVRHEQAAVHAADGYARATGKVGVALVTSGPGVTNAVTGIATAYMDSIPMVVISGQ 119 (587)
T ss_pred EecCCcchHHHHHHHhhcCCCeEEEeCCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEecC
Confidence 368999 9999999976557999999999999999999999999 9999999999999999999999999999999952
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 120 ~~~~~~~~~~~q~~d~~~l~~~itk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~ 199 (587)
T PRK06965 120 VPTAAIGQDAFQECDTVGITRPIVKHNFLVKDVRDLAETVKKAFYIARTGRPGPVVVDIPKDVSKTPCEYEYPKSVEMRS 199 (587)
T ss_pred CCccccCCCCcccccHHHHhcCCcceeEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEeChhhhhChhccccCccccccC
Confidence
Q ss_pred ------------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc------------------
Q 038651 84 ------------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM------------------ 127 (324)
Q Consensus 84 ------------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~------------------ 127 (324)
|++||||+|++|+|++++++.+++++|+|++|+||+||++|||+
T Consensus 200 ~~~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~g~pv~tt~~gkg~~~~~hpl~~G~~G~~~~~ 279 (587)
T PRK06965 200 YNPVTKGHSGQIRKAVSLLLSAKRPYIYTGGGVILANASRELRQLADLLGYPVTNTLMGLGAYPASDKKFLGMLGMHGTY 279 (587)
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCEEEECCCccccchHHHHHHHHHHhCCCEEEccccCCCCCCCChhhcCCCCCCCCH
Confidence 78899999999999999999999999999999999999999998
Q ss_pred ----cccCCcEEEEEcCccCCcccccccccC-CCC-EEEEcCCccccccCCChh------h---HHHHHHH---------
Q 038651 128 ----IVEFADAYIFVESIFNDYSSVGYSLLL-NKK-AILMQPDRIVVANGLLLP------N---RNTSAYE--------- 183 (324)
Q Consensus 128 ----~l~~aDlvl~lG~~~~~~~t~~~~~~~-~~~-iI~id~d~~~i~~~~~~~------d---~l~~~~~--------- 183 (324)
++++|||||+||++++++.++.++.+. +.. +||||.|+.+++ +.... | +|+++.+
T Consensus 280 ~a~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~-~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~ 358 (587)
T PRK06965 280 EANMAMQHCDVLIAIGARFDDRVIGNPAHFASRPRKIIHIDIDPSSIS-KRVKVDIPIVGDVKEVLKELIEQLQTAEHGP 358 (587)
T ss_pred HHHHHHHhCCEEEEECCCCcccccCChhhcCCCCceEEEEeCCHHHhC-CcCCCCeEEecCHHHHHHHHHHhhhhccccc
Confidence 578999999999999988775543333 333 999999999987 32111 2 3333211
Q ss_pred ------hh-------hhccC---CC-CCCC----------CC-------------------------CCCCCE-------
Q 038651 184 ------SY-------HRIYV---PH-GIPL----------KS-------------------------NAHEPL------- 204 (324)
Q Consensus 184 ------~~-------~~~~~---~~-~~~~----------~~-------------------------~~~~~l------- 204 (324)
.| ++... +. .... +. .+...+
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~ii~~d~G~~~~~~~~~~~~~~p~~~~~~~~~gs 438 (587)
T PRK06965 359 DADALAQWWKQIEGWRSRDCLKYDRESEIIKPQYVVEKLWELTDGDAFVCSDVGQHQMWAAQFYRFNEPRRWINSGGLGT 438 (587)
T ss_pred cccchHHHHHHHHHHHHhChhhccccCCCcCHHHHHHHHHhhCCCCeEEEeCCcHHHHHHHHhcccCCCCeEEcCCCccc
Confidence 11 10000 00 0000 00 000000
Q ss_pred ------------EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhh----CCCC--CCC-CC
Q 038651 205 ------------MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIH----DGPY--NVI-EN 265 (324)
Q Consensus 205 ------------~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~----~~~~--~~l-~~ 265 (324)
...|++.|++.+||++|.|+. |||+||+||++|+++||+||++|++++..| ..++ .++ .+
T Consensus 439 mG~glpaaiGa~lA~p~r~Vv~i~GDGsf~m~~-~eL~Ta~r~~lpviivV~NN~~~~~i~~~q~~~~~~~~~~~~~~~~ 517 (587)
T PRK06965 439 MGVGLPYAMGIKMAHPDDDVVCITGEGSIQMCI-QELSTCLQYDTPVKIISLNNRYLGMVRQWQEIEYSKRYSHSYMDAL 517 (587)
T ss_pred ccchHHHHHHHHHhCCCCcEEEEEcchhhhcCH-HHHHHHHHcCCCeEEEEEECCcchHHHHHHHHhcCCCccccCCCCC
Confidence 456788899999999999985 999999999999999999999999998765 2233 234 46
Q ss_pred CCHHHHHHHHHH-------------HHHHhHHhCCCCeEEEEEEecCCCCcHH
Q 038651 266 WNYTGLVEAFQN-------------AIETAAVEKKDCLCFIEAIVHKDDTGKE 305 (324)
Q Consensus 266 ~df~~lA~a~G~-------------al~~a~~~~~~~p~lIeV~id~~~~~~~ 305 (324)
+||+++|++||+ +|++|+ ...++|+||||.+|+++.++.
T Consensus 518 ~d~~~iA~a~G~~~~~v~~~~eL~~al~~a~-~~~~~p~lieV~i~~~~~~~p 569 (587)
T PRK06965 518 PDFVKLAEAYGHVGMRIEKTSDVEPALREAL-RLKDRTVFLDFQTDPTENVWP 569 (587)
T ss_pred CCHHHHHHHCCCEEEEECCHHHHHHHHHHHH-hcCCCcEEEEEEeccccccCC
Confidence 899999999998 777774 224889999999998775433
No 13
>PRK11269 glyoxylate carboligase; Provisional
Probab=100.00 E-value=1.2e-56 Score=457.64 Aligned_cols=294 Identities=16% Similarity=0.182 Sum_probs=234.5
Q ss_pred CcCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhc-C-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh
Q 038651 7 SSSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARAR-A-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~t-g-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~ 83 (324)
..+||+ +++|+|+|.++++|++|.||||++|+||||||||+| | +|||++|+|||++|+++|+++||.|++|||+||+
T Consensus 23 Fg~pG~~~~~l~dal~~~~~i~~v~~rhE~~A~~mAdGYar~t~g~~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~G 102 (591)
T PRK11269 23 FGVPGAAINPFYSAMRKHGGIRHILARHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTDMITGLYSASADSIPILCITG 102 (591)
T ss_pred EeCCCcccHHHHHHHhhcCCCcEEeeCCHHHHHHHHHHHHHHcCCCcEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEec
Confidence 368999 999999997656899999999999999999999999 8 9999999999999999999999999999999952
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 103 ~~~~~~~~~~~~q~~d~~~l~~~itk~s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~ 182 (591)
T PRK11269 103 QAPRARLHKEDFQAVDIESIAKPVTKWAVTVREPALVPRVFQQAFHLMRSGRPGPVLIDLPFDVQVAEIEFDPDTYEPLP 182 (591)
T ss_pred CCCccccCCCcccccChhhHhhcceeEEEEcCCHHHHHHHHHHHHHHHhhCCCCeEEEEeChhhhhcccccccccccccc
Confidence
Q ss_pred -----------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc-------------------
Q 038651 84 -----------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM------------------- 127 (324)
Q Consensus 84 -----------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~------------------- 127 (324)
|++||||+|++|+|+.++++.+++++|+|++|+||+||++|||+
T Consensus 183 ~~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~g~PV~tt~~gkg~~p~~hpl~~G~~g~~~~~~ 262 (591)
T PRK11269 183 VYKPAATRAQIEKALEMLNAAERPLIVAGGGVINADASDLLVEFAELTGVPVIPTLMGWGAIPDDHPLMAGMVGLQTSHR 262 (591)
T ss_pred cCCCCCCHHHHHHHHHHHHhCCCcEEEECCCCcccCHHHHHHHHHHHhCCCeEecccccCcCCCCChhhccCCcCCCCcH
Confidence 78899999999999999999999999999999999999999997
Q ss_pred ----cccCCcEEEEEcCccCCcccccccccCCCC-EEEEcCCccccccCCChh------h---HHHHHH-----------
Q 038651 128 ----IVEFADAYIFVESIFNDYSSVGYSLLLNKK-AILMQPDRIVVANGLLLP------N---RNTSAY----------- 182 (324)
Q Consensus 128 ----~l~~aDlvl~lG~~~~~~~t~~~~~~~~~~-iI~id~d~~~i~~~~~~~------d---~l~~~~----------- 182 (324)
++++|||||+||++|+++.++.|..+.++. +||||+|+.+++ +...+ | +|+.+.
T Consensus 263 ~~~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~i~Vd~d~~~~~-~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~ 341 (591)
T PRK11269 263 YGNATLLASDFVLGIGNRWANRHTGSVEVYTKGRKFVHVDIEPTQIG-RVFGPDLGIVSDAKAALELLVEVAREWKAAGR 341 (591)
T ss_pred HHHHHHHhCCEEEEeCCCCCccccCchhhcCCCCeEEEeeCCHHHhC-CCCCCCeEEEeCHHHHHHHHHHHhhhhccccc
Confidence 468999999999999998887665444444 999999999987 32211 2 233221
Q ss_pred ----Hhhhh-------ccCC--CC--CCC----------CC-------------------------CCCCC--------E
Q 038651 183 ----ESYHR-------IYVP--HG--IPL----------KS-------------------------NAHEP--------L 204 (324)
Q Consensus 183 ----~~~~~-------~~~~--~~--~~~----------~~-------------------------~~~~~--------l 204 (324)
..|.+ .+.. .. ... +. .+... +
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~d~ivv~d~g~~~~~~~~~~~~~~p~~~~~~~~~G~m 421 (591)
T PRK11269 342 LPDRSAWVADCQERKRTLLRKTHFDNVPIKPQRVYEEMNKAFGRDTCYVSTIGLSQIAAAQFLHVYKPRHWINCGQAGPL 421 (591)
T ss_pred ccchHHHHHHHHHHHHhchhhccCCCCCcCHHHHHHHHHHhcCCCcEEEECCcHHHHHHHHhcccCCCCcEEeCCccccc
Confidence 11211 0000 00 000 00 00000 0
Q ss_pred -----------EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhhC----CC-----CCCC-
Q 038651 205 -----------MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIHD----GP-----YNVI- 263 (324)
Q Consensus 205 -----------~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~----~~-----~~~l- 263 (324)
+..|+..||+.+||++|.|.. |||+|++||++|+++||+||++|++++..|. .. |..+
T Consensus 422 G~glpaAiGa~la~p~r~Vv~i~GDG~f~m~~-~eL~Ta~~~~lpv~~vV~NN~~~g~i~~~~~~~~~~~~~~~~~~~~~ 500 (591)
T PRK11269 422 GWTIPAALGVRAADPDRNVVALSGDYDFQFLI-EELAVGAQFNLPYIHVLVNNAYLGLIRQAQRAFDMDYCVQLAFENIN 500 (591)
T ss_pred cchhhhHHhhhhhCCCCcEEEEEccchhhcCH-HHHHHHHHhCCCeEEEEEeCCchhHHHHHHHHhccCccceeeccccc
Confidence 456788899999999999985 9999999999999999999999999987652 11 1222
Q ss_pred ------CCCCHHHHHHHHHH-------------HHHHhHHh---CCCCeEEEEEEecCCCCc
Q 038651 264 ------ENWNYTGLVEAFQN-------------AIETAAVE---KKDCLCFIEAIVHKDDTG 303 (324)
Q Consensus 264 ------~~~df~~lA~a~G~-------------al~~a~~~---~~~~p~lIeV~id~~~~~ 303 (324)
++|||+++|++||+ +|++|+ . +.++|+||||++++++.+
T Consensus 501 ~~~~~~~~~df~~lA~a~G~~~~~v~~~~eL~~al~~a~-~~~~~~~gp~lieV~v~~~~~~ 561 (591)
T PRK11269 501 SPELNGYGVDHVKVAEGLGCKAIRVFKPEDIAPALEQAK-ALMAEFRVPVVVEVILERVTNI 561 (591)
T ss_pred cccccCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHH-hhcccCCCcEEEEEEeccccCC
Confidence 45999999999998 677664 1 378999999999987643
No 14
>PRK08617 acetolactate synthase; Reviewed
Probab=100.00 E-value=2.6e-56 Score=451.97 Aligned_cols=297 Identities=18% Similarity=0.179 Sum_probs=237.9
Q ss_pred CcCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh-
Q 038651 7 SSSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA- 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~- 83 (324)
..+||+ +++|+|++.+ ++|++|.+|||++|+||||||+|+|| +|||++|+|||++|+++|+++||.|++|||+||+
T Consensus 24 Fg~pG~~~~~l~~al~~-~~i~~i~~~hE~~A~~~A~gyar~tg~~gv~~vt~GpG~~N~l~gl~~A~~~~~PvlvisG~ 102 (552)
T PRK08617 24 FGIPGAKIDRVFDALED-SGPELIVTRHEQNAAFMAAAIGRLTGKPGVVLVTSGPGVSNLATGLVTATAEGDPVVAIGGQ 102 (552)
T ss_pred EeCCCccHHHHHHHHhh-CCCCEEEeccHHHHHHHHHhHhhhcCCCEEEEECCCCcHhHhHHHHHHHhhcCCCEEEEecC
Confidence 468999 9999999976 58999999999999999999999999 9999999999999999999999999999999952
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 103 ~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~dv~~~~~~~~~~~~~~~~~ 182 (552)
T PRK08617 103 VKRADRLKRTHQSMDNVALFRPITKYSAEVQDPDNLSEVLANAFRAAESGRPGAAFVSLPQDVVDAPVTSKAIAPLSKPK 182 (552)
T ss_pred CcccccCCCCccccchhhhhhhhcceEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEeChhhhhhccccccccccccCCC
Confidence
Q ss_pred ---------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc---------------------
Q 038651 84 ---------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM--------------------- 127 (324)
Q Consensus 84 ---------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~--------------------- 127 (324)
|++||||+|++|+|+.++++.+++++|||++|+||+||++|||+
T Consensus 183 ~~~~~~~~i~~~~~~L~~AkrPvi~~G~g~~~~~a~~~l~~lae~~~~pV~tt~~gkg~~~~~hp~~~~G~~g~~~~~~~ 262 (552)
T PRK08617 183 LGPASPEDINYLAELIKNAKLPVLLLGMRASSPEVTAAIRRLLERTNLPVVETFQAAGVISRELEDHFFGRVGLFRNQPG 262 (552)
T ss_pred CCCCCHHHHHHHHHHHHhCCCCEEEECCCcchhhHHHHHHHHHHHhCCCEEeccccCccCCCCCchhhccCCcCCCcHHH
Confidence 78899999999999998899999999999999999999999997
Q ss_pred --cccCCcEEEEEcCccCCcccccccccCCCCEEEEcCCccccccCCChh------h---HHHHHHH------------h
Q 038651 128 --IVEFADAYIFVESIFNDYSSVGYSLLLNKKAILMQPDRIVVANGLLLP------N---RNTSAYE------------S 184 (324)
Q Consensus 128 --~l~~aDlvl~lG~~~~~~~t~~~~~~~~~~iI~id~d~~~i~~~~~~~------d---~l~~~~~------------~ 184 (324)
++++|||||++|+++.++.+..|......++||||.|+.+++ +...+ | +|+.+.+ .
T Consensus 263 ~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~i~id~d~~~~~-~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~ 341 (552)
T PRK08617 263 DELLKKADLVITIGYDPIEYEPRNWNSEGDATIIHIDVLPAEID-NYYQPERELIGDIAATLDLLAEKLDGLSLSPQSLE 341 (552)
T ss_pred HHHHHhCCEEEEecCccccccccccccCCCCcEEEEeCChHHhC-CccCCCeEEeCCHHHHHHHHHHhhhcccCccchHH
Confidence 478999999999999877665554322234999999999987 32222 2 2332210 1
Q ss_pred hh----h---cc--CC-C-C-CCC----------C-------------------------CCCCCC--------E-----
Q 038651 185 YH----R---IY--VP-H-G-IPL----------K-------------------------SNAHEP--------L----- 204 (324)
Q Consensus 185 ~~----~---~~--~~-~-~-~~~----------~-------------------------~~~~~~--------l----- 204 (324)
|. + .+ .. . . ... . ..+... +
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~ii~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~lp 421 (552)
T PRK08617 342 ILEELRAQLEELAERPARLEEGAVHPLRIIRALQDIVTDDTTVTVDVGSHYIWMARYFRSYEPRHLLFSNGMQTLGVALP 421 (552)
T ss_pred HHHHHHHHHHHhhhhhcccCCCCcCHHHHHHHHHHhcCCCcEEEeCCcHHHHHHHHhccccCCCeEEecCcccccccccc
Confidence 11 0 00 00 0 0 000 0 000000 0
Q ss_pred ------EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhhCCC-----CCCCCCCCHHHHHH
Q 038651 205 ------MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIHDGP-----YNVIENWNYTGLVE 273 (324)
Q Consensus 205 ------~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~~~-----~~~l~~~df~~lA~ 273 (324)
...|++.|++.+||++|.|.. |||+|++||++|+++||+||++|++++..|... ..++++|||.++|+
T Consensus 422 aaiGa~la~p~~~vv~i~GDGsf~m~~-~eL~Ta~~~~lpv~~vV~NN~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~ 500 (552)
T PRK08617 422 WAIAAALVRPGKKVVSVSGDGGFLFSA-MELETAVRLKLNIVHIIWNDGHYNMVEFQEEMKYGRSSGVDFGPVDFVKYAE 500 (552)
T ss_pred HHHhhHhhcCCCcEEEEEechHHhhhH-HHHHHHHHhCCCeEEEEEECCccchHHHHHHhhcCCcccCCCCCCCHHHHHH
Confidence 456788999999999999985 999999999999999999999999998655222 24567899999999
Q ss_pred HHHH-------------HHHHhHHhCCCCeEEEEEEecCCCCcHHHHH
Q 038651 274 AFQN-------------AIETAAVEKKDCLCFIEAIVHKDDTGKELLK 308 (324)
Q Consensus 274 a~G~-------------al~~a~~~~~~~p~lIeV~id~~~~~~~~~~ 308 (324)
+||+ +|++++ +.++|+||||.+|+++.++....
T Consensus 501 a~G~~~~~v~~~~eL~~al~~a~--~~~~p~liev~~~~~~~~~~~~~ 546 (552)
T PRK08617 501 SFGAKGLRVTSPDELEPVLREAL--ATDGPVVIDIPVDYSDNIKLMEQ 546 (552)
T ss_pred HCCCeEEEECCHHHHHHHHHHHH--hCCCcEEEEEEecccccchhhhh
Confidence 9998 777774 78899999999999888766643
No 15
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=2.6e-56 Score=453.30 Aligned_cols=293 Identities=19% Similarity=0.207 Sum_probs=237.0
Q ss_pred CcCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh-
Q 038651 7 SSSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA- 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~- 83 (324)
..+||+ +++|+|+|.+ .+|++|.+|||++|+||||||||+|| +|||++|+|||++|+++||++||.|++|||+|++
T Consensus 34 FGipG~~~~~l~dal~~-~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~~~gla~A~~~~~Pvl~I~G~ 112 (570)
T PRK06725 34 FGYPGGAILPVYDALYE-SGLKHILTRHEQAAIHAAEGYARASGKVGVVFATSGPGATNLVTGLADAYMDSIPLVVITGQ 112 (570)
T ss_pred EEcCCcchHHHHHHHHh-cCCcEEEecCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHHHHHhhcCcCEEEEecC
Confidence 468999 9999999986 47999999999999999999999999 9999999999999999999999999999999942
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 113 ~~~~~~~~~~~q~~d~~~l~~~itk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~ 192 (570)
T PRK06725 113 VATPLIGKDGFQEADVVGITVPVTKHNYQVRDVNQLSRIVQEAFYIAESGRPGPVLIDIPKDVQNEKVTSFYNEVVEIPG 192 (570)
T ss_pred CCcccccCCCCcccchhhhhhccceeEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEccccchhhcccccccCccccccc
Confidence
Q ss_pred ------------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc------------------
Q 038651 84 ------------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM------------------ 127 (324)
Q Consensus 84 ------------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~------------------ 127 (324)
|++||||+|++|+|+.++++.++|.+|||++|+||+||++|||+
T Consensus 193 ~~~~~~~~~~~~~~~~~~L~~A~rPvIl~G~g~~~~~a~~~l~~lae~~~~PV~tt~~~kg~~p~~hp~~~G~~G~~~~~ 272 (570)
T PRK06725 193 YKPEPRPDSMKLREVAKAISKAKRPLLYIGGGVIHSGGSEELIEFARENRIPVVSTLMGLGAYPPGDPLFLGMLGMHGTY 272 (570)
T ss_pred CCCCCCCCHHHHHHHHHHHHcCCCcEEEECCCccccchHHHHHHHHHHhCCCEEECCccCcCCCCCChhhcCCCCCCCCH
Confidence 78999999999999999999999999999999999999999997
Q ss_pred ----cccCCcEEEEEcCccCCcccccccccCCCC-EEEEcCCccccccCCChh------h---HHHHHHH--------hh
Q 038651 128 ----IVEFADAYIFVESIFNDYSSVGYSLLLNKK-AILMQPDRIVVANGLLLP------N---RNTSAYE--------SY 185 (324)
Q Consensus 128 ----~l~~aDlvl~lG~~~~~~~t~~~~~~~~~~-iI~id~d~~~i~~~~~~~------d---~l~~~~~--------~~ 185 (324)
++++|||||+||++++++.++.+..+.+++ +||||.|+.+++ +.... | +|+++.+ .|
T Consensus 273 ~~~~~l~~aDlil~vG~~~~~~~~~~~~~~~~~~~~i~id~d~~~i~-~~~~~~~~i~gD~~~~l~~L~~~l~~~~~~~~ 351 (570)
T PRK06725 273 AANMAVTECDLLLALGVRFDDRVTGKLELFSPHSKKVHIDIDPSEFH-KNVAVEYPVVGDVKKALHMLLHMSIHTQTDEW 351 (570)
T ss_pred HHHHHHHhCCEEEEeCCCCCccccCcccccCCCCeEEEEeCCHHHhC-CCCCCCeEEecCHHHHHHHHHHhccccCcHHH
Confidence 678999999999999988876655444444 999999999998 32221 3 2332211 11
Q ss_pred -------hhccC---C-CCCCC----------CC-------------------------CCCCCE---------------
Q 038651 186 -------HRIYV---P-HGIPL----------KS-------------------------NAHEPL--------------- 204 (324)
Q Consensus 186 -------~~~~~---~-~~~~~----------~~-------------------------~~~~~l--------------- 204 (324)
+..+. . ..... +. .+...+
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~d~iiv~d~g~~~~~~~~~~~~~~p~~~~~~~~~gsmG~~lp~a 431 (570)
T PRK06725 352 LQKVKTWKEEYPLSYKQKESELKPQHVINLVSELTNGEAIVTTEVGQHQMWAAHFYKAKNPRTFLTSGGLGTMGFGFPAA 431 (570)
T ss_pred HHHHHHHHHhChhhhcccCCCcCHHHHHHHHHhhCCCCcEEEeCCcHHHHHHHHhccccCCCeEEccCCcccccchhhHH
Confidence 11000 0 00000 00 000000
Q ss_pred ----EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhh----CCCC--CCCCCCCHHHHHHH
Q 038651 205 ----MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIH----DGPY--NVIENWNYTGLVEA 274 (324)
Q Consensus 205 ----~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~----~~~~--~~l~~~df~~lA~a 274 (324)
+..|+..||+.+||++|.|.. |||+||+||++|+++||+||++|++++..| +.++ .++.+|||+++|++
T Consensus 432 iGa~lA~p~~~vv~i~GDG~f~~~~-~el~Ta~~~~lpi~~vV~NN~~~~~~~~~q~~~~~~~~~~~~~~~~d~~~~a~a 510 (570)
T PRK06725 432 IGAQLAKEEELVICIAGDASFQMNI-QELQTIAENNIPVKVFIINNKFLGMVRQWQEMFYENRLSESKIGSPDFVKVAEA 510 (570)
T ss_pred HhhHhhcCCCeEEEEEecchhhccH-HHHHHHHHhCCCeEEEEEECCccHHHHHHHHHhcCCccccCcCCCCCHHHHHHH
Confidence 456788899999999998874 999999999999999999999999988665 2233 46678999999999
Q ss_pred HHH-------------HHHHhHHhCCCCeEEEEEEecCCCCcH
Q 038651 275 FQN-------------AIETAAVEKKDCLCFIEAIVHKDDTGK 304 (324)
Q Consensus 275 ~G~-------------al~~a~~~~~~~p~lIeV~id~~~~~~ 304 (324)
||+ ++++++ +.++|+||||++|+++.++
T Consensus 511 ~G~~~~~v~~~~~l~~al~~a~--~~~~p~liev~id~~~~~~ 551 (570)
T PRK06725 511 YGVKGLRATNSTEAKQVMLEAF--AHEGPVVVDFCVEEGENVF 551 (570)
T ss_pred CCCeEEEeCCHHHHHHHHHHHH--hCCCCEEEEEEeCCccccC
Confidence 998 677774 7899999999999877543
No 16
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=2.7e-56 Score=453.78 Aligned_cols=293 Identities=22% Similarity=0.258 Sum_probs=235.2
Q ss_pred CcCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh-
Q 038651 7 SSSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA- 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~- 83 (324)
..+||+ +++|+|+|.++++|++|.+|||++|+||||||+|+|| +|||++|+|||++|++|||++||.|++|||+||+
T Consensus 23 FgipG~~~~~l~~al~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~vt~GPG~~N~l~gl~~A~~~~~Pvl~i~G~ 102 (574)
T PRK06466 23 YGYPGGAVLHIYDALFKQDKVEHILVRHEQAATHMADGYARATGKTGVVLVTSGPGATNAITGIATAYMDSIPMVVLSGQ 102 (574)
T ss_pred EECCCcchhHHHHHhhccCCceEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHHHHHHhcCCCEEEEecC
Confidence 368999 9999999976568999999999999999999999999 9999999999999999999999999999999942
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 103 ~~~~~~~~~~~q~~d~~~l~~~itk~s~~v~~~~~~~~~~~rA~~~A~~~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~ 182 (574)
T PRK06466 103 VPSTLIGEDAFQETDMVGISRPIVKHSFMVKHASEIPEIIKKAFYIAQSGRPGPVVVDIPKDMTNPAEKFEYEYPKKVKL 182 (574)
T ss_pred CCccccCCCcccccchhhhhhccceeEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhHhhhhhccccccCccccc
Confidence
Q ss_pred --------------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc----------------
Q 038651 84 --------------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM---------------- 127 (324)
Q Consensus 84 --------------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~---------------- 127 (324)
|.+||||+|++|+|++++++.+++++|+|++|+||+||++|||+
T Consensus 183 ~~~~~~~~~~~~~i~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~g~pv~tt~~~kg~~~~~hp~~~G~~G~~~ 262 (574)
T PRK06466 183 RSYSPAVRGHSGQIRKAVEMLLAAKRPVIYSGGGVVLGNASALLTELAHLLNLPVTNTLMGLGGFPGTDRQFLGMLGMHG 262 (574)
T ss_pred ccCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccChHHHHHHHHHHhCCCEEEcCccCCCCCCCChhhcCCCcccc
Confidence 67889999999999999999999999999999999999999997
Q ss_pred ------cccCCcEEEEEcCccCCcccccccccCCCC-EEEEcCCccccccCCChh------h---HHHHHHH--------
Q 038651 128 ------IVEFADAYIFVESIFNDYSSVGYSLLLNKK-AILMQPDRIVVANGLLLP------N---RNTSAYE-------- 183 (324)
Q Consensus 128 ------~l~~aDlvl~lG~~~~~~~t~~~~~~~~~~-iI~id~d~~~i~~~~~~~------d---~l~~~~~-------- 183 (324)
++++|||||++|++++++.++.|..+.++. +||||.|+.+++ +.... | +|+++..
T Consensus 263 ~~~~~~~l~~aD~il~vG~~~~~~~~~~~~~~~~~~~vi~id~d~~~i~-~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~ 341 (574)
T PRK06466 263 TYEANMAMHHADVILAVGARFDDRVTNGPAKFCPNAKIIHIDIDPASIS-KTIKADIPIVGPVESVLTEMLAILKEIGEK 341 (574)
T ss_pred CHHHHHHHHhCCEEEEECCCCCccccCchhhcCCCCeEEEEECCHHHhC-CccCCCeEEecCHHHHHHHHHHHhhhhccc
Confidence 678999999999999988877665444444 999999999998 32222 2 2332210
Q ss_pred -------hhh-------hccC--C----CCCCC----------CCCCCC-------------------------CE----
Q 038651 184 -------SYH-------RIYV--P----HGIPL----------KSNAHE-------------------------PL---- 204 (324)
Q Consensus 184 -------~~~-------~~~~--~----~~~~~----------~~~~~~-------------------------~l---- 204 (324)
.|. .... . ..... +..+.+ .+
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~p~~~~~~~~ 421 (574)
T PRK06466 342 PDKEALAAWWKQIDEWRGRHGLFPYDKGDGGIIKPQQVVETLYEVTNGDAYVTSDVGQHQMFAAQYYKFNKPNRWINSGG 421 (574)
T ss_pred ccccchHHHHHHHHHHHHhCcchhcccCCCCCcCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHhccccCCCcEEcCCC
Confidence 111 0000 0 00000 000000 00
Q ss_pred ---------------EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhh----CCCC--CCC
Q 038651 205 ---------------MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIH----DGPY--NVI 263 (324)
Q Consensus 205 ---------------~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~----~~~~--~~l 263 (324)
...|++.||+.+||++|.|.. |||+|++||++|+++||+||++|++++..| ...+ .++
T Consensus 422 ~gsmG~glpaAiGa~la~p~r~Vv~i~GDG~f~m~~-~eL~Ta~r~~lpv~ivV~NN~~y~~i~~~q~~~~~~~~~~~~~ 500 (574)
T PRK06466 422 LGTMGFGLPAAMGVKLAFPDQDVACVTGEGSIQMNI-QELSTCLQYGLPVKIINLNNGALGMVRQWQDMQYEGRHSHSYM 500 (574)
T ss_pred cchhhchHHHHHHHHHhCCCCeEEEEEcchhhhccH-HHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHhcCCceeecCC
Confidence 456788999999999999985 999999999999999999999999998765 2222 233
Q ss_pred -CCCCHHHHHHHHHH-------------HHHHhHHhCC-CCeEEEEEEecCCCCc
Q 038651 264 -ENWNYTGLVEAFQN-------------AIETAAVEKK-DCLCFIEAIVHKDDTG 303 (324)
Q Consensus 264 -~~~df~~lA~a~G~-------------al~~a~~~~~-~~p~lIeV~id~~~~~ 303 (324)
.++||+++|++||+ +|++|+ +. ++|+||||++++++.+
T Consensus 501 ~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~--~~~~~p~lIev~i~~~~~~ 553 (574)
T PRK06466 501 ESLPDFVKLAEAYGHVGIRITDLKDLKPKLEEAF--AMKDRLVFIDIYVDRSEHV 553 (574)
T ss_pred CCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHH--hcCCCcEEEEEEeCCcccc
Confidence 45899999999998 777774 54 8999999999987644
No 17
>PRK08322 acetolactate synthase; Reviewed
Probab=100.00 E-value=3.8e-56 Score=450.30 Aligned_cols=297 Identities=19% Similarity=0.222 Sum_probs=237.8
Q ss_pred CcCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh-
Q 038651 7 SSSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA- 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~- 83 (324)
..+||+ +++|+|+|.+ ++|++|.+|||++|+||||||||+|| +|||++|+|||++|+++||++||.|++|||+||+
T Consensus 20 Fg~pG~~~~~l~dal~~-~~i~~i~~~hE~~A~~~A~gyar~tg~~gv~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~g~ 98 (547)
T PRK08322 20 FGIPGEENLDLLEALRD-SSIKLILTRHEQGAAFMAATYGRLTGKAGVCLSTLGPGATNLVTGVAYAQLGGMPMVAITGQ 98 (547)
T ss_pred EeCCCcchHHHHHHHHh-cCCcEEEeccHHHHHHHHHHHHHhhCCCEEEEECCCccHhHHHHHHHHHhhcCCCEEEEecc
Confidence 368999 9999999965 68999999999999999999999999 9999999999999999999999999999999952
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 99 ~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv~~~~~~~~~~~~~~~~~ 178 (547)
T PRK08322 99 KPIKRSKQGSFQIVDVVAMMAPLTKWTRQIVSPDNIPEVVREAFRLAEEERPGAVHLELPEDIAAEETDGKPLPRSYSRR 178 (547)
T ss_pred ccccccCCCccccccHHHHhhhheeEEEEeCCHHHHHHHHHHHHHHHccCCCCcEEEEcChhhhhCccccccccccCCCC
Confidence
Q ss_pred --------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc----------------------
Q 038651 84 --------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM---------------------- 127 (324)
Q Consensus 84 --------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~---------------------- 127 (324)
|++||||+|++|+|+.++++.+++++|||++|+||+||++|||.
T Consensus 179 ~~~~~~~i~~~~~~l~~A~rPviv~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~~~~~hp~~~G~~G~~~~~~~~~ 258 (547)
T PRK08322 179 PYASPKAIERAAEAIQAAKNPLILIGAGANRKTASKALTEFVDKTGIPFFTTQMGKGVIPETHPLSLGTAGLSQGDYVHC 258 (547)
T ss_pred CCCCHHHHHHHHHHHHhCCCcEEEECCCcchhcHHHHHHHHHHHhCCCEEEccccCCcCCCCCchhccCCCCCCCHHHHH
Confidence 78999999999999998999999999999999999999999998
Q ss_pred cccCCcEEEEEcCccCCcccccccccCCCCEEEEcCCccccccCCChh------h---HHHHHHH----------hh---
Q 038651 128 IVEFADAYIFVESIFNDYSSVGYSLLLNKKAILMQPDRIVVANGLLLP------N---RNTSAYE----------SY--- 185 (324)
Q Consensus 128 ~l~~aDlvl~lG~~~~~~~t~~~~~~~~~~iI~id~d~~~i~~~~~~~------d---~l~~~~~----------~~--- 185 (324)
++++|||||+||+++.++.+..|....+.++||||+|+.+++ +.... | +|+++.+ .|
T Consensus 259 ~l~~aDlil~lG~~l~~~~~~~~~~~~~~~~i~id~d~~~~~-~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~ 337 (547)
T PRK08322 259 AIEHADLIINVGHDVIEKPPFFMNPNGDKKVIHINFLPAEVD-PVYFPQVEVVGDIANSLWQLKERLADQPHWDFPRFLK 337 (547)
T ss_pred HHHhCCEEEEECCCCccccccccCCCCCCeEEEEeCCHHHcC-CCcCCCeEEecCHHHHHHHHHHhccccccccHHHHHH
Confidence 578999999999999888766554222223999999999887 32222 2 2332211 01
Q ss_pred -hhc----cC----CCCCCC----------C-------------------------CCCCCCE-----------------
Q 038651 186 -HRI----YV----PHGIPL----------K-------------------------SNAHEPL----------------- 204 (324)
Q Consensus 186 -~~~----~~----~~~~~~----------~-------------------------~~~~~~l----------------- 204 (324)
++. .. ....+. + ..+...+
T Consensus 338 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~ii~~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaaiG 417 (547)
T PRK08322 338 IREAIEAHLEEGADDDRFPMKPQRIVADLRKVMPDDDIVILDNGAYKIWFARNYRAYEPNTCLLDNALATMGAGLPSAIA 417 (547)
T ss_pred HHHHHHHhhhhcccCCCCCcCHHHHHHHHHHHCCCCeEEEECCcHHHHHHHHhcccCCCCCEEcCCCcccccchhHHHHH
Confidence 000 00 000000 0 0011101
Q ss_pred --EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhhC-----CCCCCCCCCCHHHHHHHHHH
Q 038651 205 --MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIHD-----GPYNVIENWNYTGLVEAFQN 277 (324)
Q Consensus 205 --~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~-----~~~~~l~~~df~~lA~a~G~ 277 (324)
...|+..|++.+||++|.|+. |||+|++||++|+++||+||++|++++..|. ..+.++++|||+++|++||+
T Consensus 418 a~la~p~~~vv~i~GDGsf~m~~-~eL~Ta~~~~lpv~iiV~NN~~~g~~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~ 496 (547)
T PRK08322 418 AKLVHPDRKVLAVCGDGGFMMNS-QELETAVRLGLPLVVLILNDNAYGMIRWKQENMGFEDFGLDFGNPDFVKYAESYGA 496 (547)
T ss_pred HHHhCCCCcEEEEEcchhHhccH-HHHHHHHHhCCCeEEEEEeCCCcchHHHHHHhhcCCcccccCCCCCHHHHHHHCCC
Confidence 446788899999999999885 9999999999999999999999999986552 22356778999999999998
Q ss_pred -------------HHHHhHHhCCCCeEEEEEEecCCCCcHHHHH
Q 038651 278 -------------AIETAAVEKKDCLCFIEAIVHKDDTGKELLK 308 (324)
Q Consensus 278 -------------al~~a~~~~~~~p~lIeV~id~~~~~~~~~~ 308 (324)
+|++++ +.++|+||||++|+++.++.+..
T Consensus 497 ~~~~v~~~~eL~~al~~a~--~~~~p~lIev~v~~~~~~~~~~~ 538 (547)
T PRK08322 497 KGYRVESADDLLPTLEEAL--AQPGVHVIDCPVDYSENDRVLNQ 538 (547)
T ss_pred eEEEeCCHHHHHHHHHHHH--hCCCCEEEEEEecCccCcchhhh
Confidence 777774 78999999999998877765554
No 18
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=100.00 E-value=2e-56 Score=454.68 Aligned_cols=294 Identities=21% Similarity=0.253 Sum_probs=235.5
Q ss_pred CcCCCC-chHHHHhhhc---CCCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhh
Q 038651 7 SSSPAD-SSSLLDHLIA---EPGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATI 81 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~---~~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~I 81 (324)
..+||+ +++|+|+|.+ +++|++|.+|||++|+||||||+|+|| +|||++|+|||++|++|||++||.|++|||+|
T Consensus 21 Fg~pG~~~~~l~dal~~~~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~l~gi~~A~~~~~Pvl~i 100 (572)
T PRK06456 21 FGIPGLSNMQIYDAFVEDLANGELRHVLMRHEQAAAHAADGYARASGVPGVCTATSGPGTTNLVTGLITAYWDSSPVIAI 100 (572)
T ss_pred EeCCCcchHHHHHHHHhhccCCCCeEEEeCcHHHHHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHHHHHHhhCCCEEEE
Confidence 368999 9999999964 246999999999999999999999999 99999999999999999999999999999999
Q ss_pred hh------------------------------------------------------------------------------
Q 038651 82 TA------------------------------------------------------------------------------ 83 (324)
Q Consensus 82 t~------------------------------------------------------------------------------ 83 (324)
|+
T Consensus 101 ~G~~~~~~~~~~~~q~~d~~~i~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv~~~~~~~~~~~~~~ 180 (572)
T PRK06456 101 TGQVPRSVMGKMAFQEADAMGVFENVTKYVIGIKRIDEIPQWIKNAFYIATTGRPGPVVIDIPRDIFYEKMEEIKWPEKP 180 (572)
T ss_pred ecCCCccccCCCCccccchhhhhhccceeEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEecChhHhhcccccccccccc
Confidence 52
Q ss_pred -----------------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc-------------
Q 038651 84 -----------------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM------------- 127 (324)
Q Consensus 84 -----------------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~------------- 127 (324)
|++||||+|++|+|++++++.+++++|+|++|+||+||++|||+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~i~~~hp~~~G~~g 260 (572)
T PRK06456 181 LVKGYRDFPTRIDRLALKKAAEILINAERPIILVGTGVVWSNATPEVLELAELLHIPIVSTFPGKTAIPHDHPLYFGPMG 260 (572)
T ss_pred cccCCCCCCCCCCHHHHHHHHHHHHhCCCcEEEECCCCcccchHHHHHHHHHHhCCCEEEcCccCcCCCCCCccccccCC
Confidence 78899999999999999999999999999999999999999998
Q ss_pred ---------cccCCcEEEEEcCccCCcccccccccCC-CC-EEEEcCCccccccCCChh-------h---HHHHHHH---
Q 038651 128 ---------IVEFADAYIFVESIFNDYSSVGYSLLLN-KK-AILMQPDRIVVANGLLLP-------N---RNTSAYE--- 183 (324)
Q Consensus 128 ---------~l~~aDlvl~lG~~~~~~~t~~~~~~~~-~~-iI~id~d~~~i~~~~~~~-------d---~l~~~~~--- 183 (324)
.+++|||||+||++++++.+..|..+.+ .+ +||||+|+.+++ + .++ | +|+.+.+
T Consensus 261 ~~~~~~~~~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~-~-~~~~~~~i~~D~~~~l~~L~~~l~ 338 (572)
T PRK06456 261 YYGRAEASMAALESDAMLVVGARFSDRTFTSYDEMVETRKKFIMVNIDPTDGE-K-AIKVDVGIYGNAKIILRELIKAIT 338 (572)
T ss_pred CCCCHHHHHHHHhCCEEEEECCCCchhhccccccccCCCCeEEEEeCChHHhC-C-ccCCCeEEecCHHHHHHHHHHHhh
Confidence 5689999999999999988766654433 34 999999999887 2 222 2 2332110
Q ss_pred ---------hhhh-------ccC-----CCCCCC----------C-------------------------CCCCCCE---
Q 038651 184 ---------SYHR-------IYV-----PHGIPL----------K-------------------------SNAHEPL--- 204 (324)
Q Consensus 184 ---------~~~~-------~~~-----~~~~~~----------~-------------------------~~~~~~l--- 204 (324)
.|.+ .+. ...... + ..+...+
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~ii~~d~g~~~~~~~~~~~~~~p~~~~~~~ 418 (572)
T PRK06456 339 ELGQKRDRSAWLKRVKEYKEYYSQFYYTEENGKLKPWKIMKTIRQALPRDAIVTTGVGQHQMWAEVFWEVLEPRTFLTSS 418 (572)
T ss_pred hcccccccHHHHHHHHHHHHhchhhcccccCCCcCHHHHHHHHHHhCCCCEEEEECCcHHHHHHHHhcCcCCCCcEEcCC
Confidence 1211 000 000000 0 0000001
Q ss_pred ----------------EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhhC----CCC--CC
Q 038651 205 ----------------MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIHD----GPY--NV 262 (324)
Q Consensus 205 ----------------~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~----~~~--~~ 262 (324)
...|+..|++.+||++|.|.. |||+|++||++|+++||+||++|++++..|+ .++ .+
T Consensus 419 ~~g~mG~glpaAiGa~la~p~~~vv~i~GDG~f~m~~-~eL~Ta~~~~l~i~ivV~NN~~yg~i~~~q~~~~~~~~~~~~ 497 (572)
T PRK06456 419 GMGTMGFGLPAAMGAKLARPDKVVVDLDGDGSFLMTG-TNLATAVDEHIPVISVIFDNRTLGLVRQVQDLFFGKRIVGVD 497 (572)
T ss_pred CcccccchhHHHHHHHHhCCCCeEEEEEccchHhcch-HHHHHHHHhCCCeEEEEEECCchHHHHHHHHHhhCCCccccc
Confidence 456788899999999999985 9999999999999999999999999987652 222 34
Q ss_pred C-CCCCHHHHHHHHHH-------------HHHHhHHhCCCCeEEEEEEecCCCCcHH
Q 038651 263 I-ENWNYTGLVEAFQN-------------AIETAAVEKKDCLCFIEAIVHKDDTGKE 305 (324)
Q Consensus 263 l-~~~df~~lA~a~G~-------------al~~a~~~~~~~p~lIeV~id~~~~~~~ 305 (324)
+ ++|||+++|++||+ +|++|+ +.++|+||||.+++++.++.
T Consensus 498 ~~~~~d~~~~A~a~G~~~~~v~~~~eL~~al~~a~--~~~~p~lIev~v~~~~~~~~ 552 (572)
T PRK06456 498 YGPSPDFVKLAEAFGALGFNVTTYEDIEKSLKSAI--KEDIPAVIRVPVDKEELALP 552 (572)
T ss_pred CCCCCCHHHHHHHCCCeeEEeCCHHHHHHHHHHHH--hCCCCEEEEEEeCcccccCC
Confidence 5 56999999999998 677764 68999999999998775543
No 19
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=4.2e-56 Score=451.43 Aligned_cols=293 Identities=20% Similarity=0.220 Sum_probs=236.4
Q ss_pred CcCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh-
Q 038651 7 SSSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA- 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~- 83 (324)
..+||+ +++|+|+|.++++|++|.+|||++|+||||||||+|| +|||++|+|||++|+++||++||.|++|||+|++
T Consensus 22 FgipG~~~~~l~~~l~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~gla~A~~~~~Pvl~i~G~ 101 (563)
T PRK08527 22 FGYPGGAILNIYDEIYKQNYFKHILTRHEQAAVHAADGYARASGKVGVAIVTSGPGFTNAVTGLATAYMDSIPLVLISGQ 101 (563)
T ss_pred EECCCcchHHHHHHHhccCCCeEEEeccHHHHHHHHHHHHhhhCCCEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEecC
Confidence 468999 9999999976568999999999999999999999999 9999999999999999999999999999999942
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 102 ~~~~~~~~~~~q~~d~~~~~~~~tk~s~~v~~~~~i~~~l~~A~~~a~s~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~ 181 (563)
T PRK08527 102 VPNSLIGTDAFQEIDAVGISRPCVKHNYLVKSIEELPRILKEAFYIARSGRPGPVHIDIPKDVTATLGEFEYPKEISLKT 181 (563)
T ss_pred CCccccCCCCCcccchhhhhhcccceEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhHhhhhhcccccccccccc
Confidence
Q ss_pred ------------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc------------------
Q 038651 84 ------------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM------------------ 127 (324)
Q Consensus 84 ------------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~------------------ 127 (324)
|++||||+|++|+|++++++.++|++|+|++++||+||++|||+
T Consensus 182 ~~~~~~~~~~~i~~~~~~L~~A~rPviv~G~g~~~~~a~~~l~~lae~~~~pV~tt~~~kg~~~~~hpl~~G~~g~~~~~ 261 (563)
T PRK08527 182 YKPTYKGNSRQIKKAAEAIKEAKKPLFYLGGGAILSNASEEIRELVKKTGIPAVETLMARGVLRSDDPLLLGMLGMHGSY 261 (563)
T ss_pred CCCCCCCCHHHHHHHHHHHHcCCCCEEEECCCccccchHHHHHHHHHHHCCCEEEccccCCCCCCCChhhcCCCcccCCH
Confidence 78899999999999999999999999999999999999999998
Q ss_pred ----cccCCcEEEEEcCccCCcccccccccCCCC-EEEEcCCccccccCCChh-------h---HHHHHHH---------
Q 038651 128 ----IVEFADAYIFVESIFNDYSSVGYSLLLNKK-AILMQPDRIVVANGLLLP-------N---RNTSAYE--------- 183 (324)
Q Consensus 128 ----~l~~aDlvl~lG~~~~~~~t~~~~~~~~~~-iI~id~d~~~i~~~~~~~-------d---~l~~~~~--------- 183 (324)
++++|||||+||++++++.++.|..+.+.. +||||.|+.+++ + .++ | +|+++.+
T Consensus 262 ~~~~~l~~aD~vl~lG~~l~~~~~~~~~~~~~~~~~i~id~d~~~~~-~-~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~ 339 (563)
T PRK08527 262 AANMAMSECDLLISLGARFDDRVTGKLSEFAKHAKIIHVDIDPSSIS-K-IVNADYPIVGDLKNVLKEMLEELKEENPTT 339 (563)
T ss_pred HHHHHHHhCCEEEEeCCCCCccccCChhhcCCCCeEEEEECCHHHhC-C-CCCCCeEEecCHHHHHHHHHHhhhhccccc
Confidence 678999999999999988877665555544 999999999987 2 222 2 3332211
Q ss_pred --hhhh-------ccCC---C-CCCC----------CC-------------------------CCCCCE-----------
Q 038651 184 --SYHR-------IYVP---H-GIPL----------KS-------------------------NAHEPL----------- 204 (324)
Q Consensus 184 --~~~~-------~~~~---~-~~~~----------~~-------------------------~~~~~l----------- 204 (324)
.|.+ .... . ..+. .. .+...+
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~iv~~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~ 419 (563)
T PRK08527 340 YKEWREILKRYNELHPLSYEDSDEVLKPQWVIERVGELLGDDAIISTDVGQHQMWVAQFYPFNYPRQLATSGGLGTMGYG 419 (563)
T ss_pred hHHHHHHHHHHHHhCcccccCCCCCcCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHhcccCCCCeEEcCCCcccccch
Confidence 1211 0000 0 0000 00 000000
Q ss_pred --------EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhh----CCCC--CCC-CCCCHH
Q 038651 205 --------MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIH----DGPY--NVI-ENWNYT 269 (324)
Q Consensus 205 --------~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~----~~~~--~~l-~~~df~ 269 (324)
...|+..|++.+||++|.|+. |||+|++||++|+++||+||++|++++..| ...| .++ .+|||.
T Consensus 420 l~~aiGa~la~p~~~vv~i~GDG~f~m~~-~eL~Ta~~~~lpvi~vV~NN~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~ 498 (563)
T PRK08527 420 LPAALGAKLAVPDKVVINFTGDGSILMNI-QELMTAVEYKIPVINIILNNNFLGMVRQWQTFFYEERYSETDLSTQPDFV 498 (563)
T ss_pred HHHHHHHHHhCCCCcEEEEecCchhcccH-HHHHHHHHhCCCeEEEEEECCcchhHHHHHHhhcCCceeeccCCCCCCHH
Confidence 345678888889999998874 999999999999999999999999998765 2233 355 369999
Q ss_pred HHHHHHHH-------------HHHHhHHhCCCCeEEEEEEecCCCCcH
Q 038651 270 GLVEAFQN-------------AIETAAVEKKDCLCFIEAIVHKDDTGK 304 (324)
Q Consensus 270 ~lA~a~G~-------------al~~a~~~~~~~p~lIeV~id~~~~~~ 304 (324)
++|++||+ +|++++ +.++|+||||.+|+.+.++
T Consensus 499 ~~a~a~G~~~~~v~~~~el~~al~~a~--~~~~p~lieV~v~~~~~~~ 544 (563)
T PRK08527 499 KLAESFGGIGFRVTTKEEFDKALKEAL--ESDKVALIDVKIDRFENVL 544 (563)
T ss_pred HHHHHCCCeEEEECCHHHHHHHHHHHH--hCCCCEEEEEEECCccccc
Confidence 99999998 777774 6799999999999877543
No 20
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=100.00 E-value=4.8e-56 Score=455.19 Aligned_cols=293 Identities=23% Similarity=0.242 Sum_probs=235.4
Q ss_pred CcCCCC-chHHHHhhhcC---CCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhh
Q 038651 7 SSSPAD-SSSLLDHLIAE---PGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATI 81 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~---~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~I 81 (324)
..+||+ +++|+|+|.+. .+|++|.+|||++|+||||||+|+|| +|||++|+|||++|++|||++||.|++|||+|
T Consensus 38 FgipG~~~~~l~dal~~~~~~~~i~~i~~rhE~~Aa~aA~gyar~tgk~gv~~~t~GPG~~n~l~gl~~A~~d~~Pvl~i 117 (616)
T PRK07418 38 FGYPGGAILPIYDELYKAEAEGWLKHILVRHEQGAAHAADGYARATGKVGVCFGTSGPGATNLVTGIATAQMDSVPMVVI 117 (616)
T ss_pred EeCcCcchHHHHHHHHhcccCCCceEEEeccHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHHHHHHhcCCCEEEE
Confidence 368999 99999999742 36999999999999999999999999 99999999999999999999999999999999
Q ss_pred hh------------------------------------------------------------------------------
Q 038651 82 TA------------------------------------------------------------------------------ 83 (324)
Q Consensus 82 t~------------------------------------------------------------------------------ 83 (324)
++
T Consensus 118 ~G~~~~~~~~~~~~Qe~d~~~~~~~vtk~~~~v~~~~~i~~~l~~A~~~A~~~~~GPv~l~iP~Dv~~~~~~~~~~~~~~ 197 (616)
T PRK07418 118 TGQVPRPAIGTDAFQETDIFGITLPIVKHSYVVRDPSDMARIVAEAFHIASSGRPGPVLIDIPKDVGQEEFDYVPVEPGS 197 (616)
T ss_pred ecCCCccccCCCCcccccHHHHhhhcceeEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEecchhhhhchhcccccCccc
Confidence 42
Q ss_pred -----------------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc-------------
Q 038651 84 -----------------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM------------- 127 (324)
Q Consensus 84 -----------------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~------------- 127 (324)
|++||||+|++|+|++++++.++|++|||++|+||+||++|||+
T Consensus 198 ~~~~~~~~~~~~~~~~v~~~~~~L~~AkrPvI~~G~g~~~~~a~~~l~~lae~l~~pV~tt~~gkg~~p~~hpl~~G~~G 277 (616)
T PRK07418 198 VKPPGYRPTVKGNPRQINAALKLIEEAERPLLYVGGGAISAGAHAELKELAERFQIPVTTTLMGKGAFDEHHPLSVGMLG 277 (616)
T ss_pred cccCCCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCcCcccHHHHHHHHHHHHCCCEEEccCCCcCCCCCCcccccCCC
Confidence 78899999999999999999999999999999999999999998
Q ss_pred ---------cccCCcEEEEEcCccCCcccccccccCCCC-EEEEcCCccccccCCChh------h---HHHHHHH-----
Q 038651 128 ---------IVEFADAYIFVESIFNDYSSVGYSLLLNKK-AILMQPDRIVVANGLLLP------N---RNTSAYE----- 183 (324)
Q Consensus 128 ---------~l~~aDlvl~lG~~~~~~~t~~~~~~~~~~-iI~id~d~~~i~~~~~~~------d---~l~~~~~----- 183 (324)
++++|||||+||++++++.++.|..+.+.. +||||.|+.+++ ++... | +|+++.+
T Consensus 278 ~~g~~~~~~~l~~aDlvL~vG~~~~~~~~~~~~~~~~~~~~i~id~d~~~ig-~~~~~~~~i~~D~~~~l~~L~~~l~~~ 356 (616)
T PRK07418 278 MHGTAYANFAVTECDLLIAVGARFDDRVTGKLDEFASRAKVIHIDIDPAEVG-KNRRPDVPIVGDVRKVLVKLLERSLEP 356 (616)
T ss_pred CCCCHHHHHHHHhCCEEEEEcCCCCccccCChhhcCCCCeEEEEeCCHHHhC-CccCCCeEEecCHHHHHHHHHHhhhcc
Confidence 678999999999999988876555444444 999999999998 33222 3 2332211
Q ss_pred -------hh-------hhccC----CCCCCC---------------------------------CCCCCCCE--------
Q 038651 184 -------SY-------HRIYV----PHGIPL---------------------------------KSNAHEPL-------- 204 (324)
Q Consensus 184 -------~~-------~~~~~----~~~~~~---------------------------------~~~~~~~l-------- 204 (324)
.| ++.+. ...... ...+...+
T Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~l~~~~~d~i~~~D~G~~~~~~~~~~~~~p~~~~~s~~~g~m 436 (616)
T PRK07418 357 TTPPRTQAWLERINRWKQDYPLVVPPYEGEIYPQEVLLAVRDLAPDAYYTTDVGQHQMWAAQFLRNGPRRWISSAGLGTM 436 (616)
T ss_pred ccccchHHHHHHHHHHHHhCcccccCCCCCcCHHHHHHHHHhhCCCcEEEECChHHHHHHHHhhhcCCCeEEcCCCcccc
Confidence 11 11000 000000 00111101
Q ss_pred -----------EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhhC----CCC--CCC--CC
Q 038651 205 -----------MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIHD----GPY--NVI--EN 265 (324)
Q Consensus 205 -----------~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~----~~~--~~l--~~ 265 (324)
...|++.||+.+||++|.|.. |||+|++||++|+++||+||++|++++..|. ..| .++ +.
T Consensus 437 G~glpaAiGA~lA~p~r~Vv~i~GDG~f~m~~-~eL~Ta~r~~lpvi~vV~NN~~~g~i~~~q~~~~~~~~~~~~~~~~~ 515 (616)
T PRK07418 437 GFGMPAAMGVKVALPDEEVICIAGDASFLMNI-QELGTLAQYGINVKTVIINNGWQGMVRQWQESFYGERYSASNMEPGM 515 (616)
T ss_pred ccHHHHHHHHHHhCCCCcEEEEEcchHhhhhH-HHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCCceeecCCCCC
Confidence 456788999999999999984 9999999999999999999999999886652 233 234 46
Q ss_pred CCHHHHHHHHHH-------------HHHHhHHhCCCCeEEEEEEecCCCCc
Q 038651 266 WNYTGLVEAFQN-------------AIETAAVEKKDCLCFIEAIVHKDDTG 303 (324)
Q Consensus 266 ~df~~lA~a~G~-------------al~~a~~~~~~~p~lIeV~id~~~~~ 303 (324)
+||+++|++||+ +|++|+ +.++|+||||++++++.+
T Consensus 516 ~d~~~~A~a~G~~g~~V~~~~el~~al~~a~--~~~~p~lIeV~i~~~~~~ 564 (616)
T PRK07418 516 PDFVKLAEAFGVKGMVISERDQLKDAIAEAL--AHDGPVLIDVHVRRDENC 564 (616)
T ss_pred CCHHHHHHHCCCeEEEeCCHHHHHHHHHHHH--hCCCCEEEEEEecCcccc
Confidence 999999999998 777774 788999999999987743
No 21
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=100.00 E-value=5.3e-56 Score=449.39 Aligned_cols=294 Identities=21% Similarity=0.257 Sum_probs=236.5
Q ss_pred CcCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh-
Q 038651 7 SSSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA- 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~- 83 (324)
..+||+ +++|+|+|.+ .+|++|.+|||++|+||||||+|+|| +|||++|+|||++|+++||++||.|++|||+||+
T Consensus 20 Fg~pG~~~~~l~~al~~-~~i~~v~~~hE~~A~~~Adgyar~sg~~gv~~~t~GpG~~n~~~~l~~A~~~~~Pvl~i~g~ 98 (548)
T PRK08978 20 FGYPGGAIMPVYDALYD-GGVEHLLCRHEQGAAMAAIGYARATGKVGVCIATSGPGATNLITGLADALLDSVPVVAITGQ 98 (548)
T ss_pred EeCCCcchHHHHHHHHh-cCCeEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHHHHHhhcCCCEEEEecC
Confidence 468999 9999999976 48999999999999999999999999 9999999999999999999999999999999952
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 99 ~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv~~~~~~~~~~~~~~~~~ 178 (548)
T PRK08978 99 VSSPLIGTDAFQEIDVLGLSLACTKHSFLVQSLEELPEIMAEAFEIASSGRPGPVLVDIPKDIQLAEGELEPHLTTVENE 178 (548)
T ss_pred CCccccCCCCCcccchhccccCceeeEEEECCHHHHHHHHHHHHHHHhcCCCCcEEEecChhhhhccccccccccccCCC
Confidence
Q ss_pred --------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc----------------------
Q 038651 84 --------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM---------------------- 127 (324)
Q Consensus 84 --------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~---------------------- 127 (324)
|++||||+|++|+|+.++++.+++++|||++|+||+||++|||+
T Consensus 179 ~~~~~~~l~~~~~~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~~~~~hp~~~G~~g~~~~~~~~~ 258 (548)
T PRK08978 179 PAFPAAELEQARALLAQAKKPVLYVGGGVGMAGAVPALREFLAATGMPAVATLKGLGAVEADHPYYLGMLGMHGTKAANL 258 (548)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEECCCccccchHHHHHHHHHHHCCCEEEccccCCCCCCCCccccCCCCCCCCHHHHH
Confidence 78899999999999999999999999999999999999999998
Q ss_pred cccCCcEEEEEcCccCCcccccccccCCCC-EEEEcCCccccccCCChh------h---HHHHHHH-----hhhh-----
Q 038651 128 IVEFADAYIFVESIFNDYSSVGYSLLLNKK-AILMQPDRIVVANGLLLP------N---RNTSAYE-----SYHR----- 187 (324)
Q Consensus 128 ~l~~aDlvl~lG~~~~~~~t~~~~~~~~~~-iI~id~d~~~i~~~~~~~------d---~l~~~~~-----~~~~----- 187 (324)
++++|||||++|+++++..++.+..+.++. +||||.|+.+++ +.... | +|+++.+ .|.+
T Consensus 259 ~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~-~~~~~~~~i~~d~~~~l~~l~~~~~~~~~~~~~~~~ 337 (548)
T PRK08978 259 AVQECDLLIAVGARFDDRVTGKLNTFAPHAKVIHLDIDPAEIN-KLRQAHVALQGDLNALLPALQQPLNIDAWRQHCAQL 337 (548)
T ss_pred HHHhCCEEEEEcCCCCccccCCccccCCCCeEEEEECCHHHhC-CCCCCCeEEecCHHHHHHHHHHhccchHHHHHHHHH
Confidence 567999999999999888776555444444 999999999987 32221 2 3333211 1210
Q ss_pred --ccC----CCCCCC----------C-------------------------CCCCCCE-------------------Eec
Q 038651 188 --IYV----PHGIPL----------K-------------------------SNAHEPL-------------------MLS 207 (324)
Q Consensus 188 --~~~----~~~~~~----------~-------------------------~~~~~~l-------------------~~~ 207 (324)
... ...... . ..+...+ +..
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iiv~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaAiGa~la~ 417 (548)
T PRK08978 338 RAEHAWRYDHPGEAIYAPALLKQLSDRKPADTVVTTDVGQHQMWVAQHMRFTRPENFITSSGLGTMGFGLPAAIGAQVAR 417 (548)
T ss_pred HHhCchhccCCCCCcCHHHHHHHHHHhCCCCcEEEecCcHHHHHHHHhcccCCCCeEEeCCchhhhhchHHHHHHHHHhC
Confidence 000 000000 0 0010001 445
Q ss_pred CCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhh----CCCC--CCC-CCCCHHHHHHHHHH---
Q 038651 208 GNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIH----DGPY--NVI-ENWNYTGLVEAFQN--- 277 (324)
Q Consensus 208 ~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~----~~~~--~~l-~~~df~~lA~a~G~--- 277 (324)
|++.|++.+||++|.|.. |||+|++||++|+++||+||++|++++..| ..+| .++ ++|||+++|++||+
T Consensus 418 p~~~vv~i~GDG~f~~~~-~eL~ta~~~~l~v~ivV~NN~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~ 496 (548)
T PRK08978 418 PDDTVICVSGDGSFMMNV-QELGTIKRKQLPVKIVLLDNQRLGMVRQWQQLFFDERYSETDLSDNPDFVMLASAFGIPGQ 496 (548)
T ss_pred CCCcEEEEEccchhhccH-HHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHHhCCcceecCCCCCCCHHHHHHHCCCeEE
Confidence 788899999999999985 999999999999999999999999998765 2233 344 56999999999998
Q ss_pred ----------HHHHhHHhCCCCeEEEEEEecCCCCcHH
Q 038651 278 ----------AIETAAVEKKDCLCFIEAIVHKDDTGKE 305 (324)
Q Consensus 278 ----------al~~a~~~~~~~p~lIeV~id~~~~~~~ 305 (324)
+|++++ ++++|+||||++|+++.++.
T Consensus 497 ~v~~~~el~~al~~a~--~~~~p~lIeV~id~~~~~~~ 532 (548)
T PRK08978 497 TITRKDQVEAALDTLL--NSEGPYLLHVSIDELENVWP 532 (548)
T ss_pred EECCHHHHHHHHHHHH--hCCCCEEEEEEecCcccccc
Confidence 777774 68999999999998775543
No 22
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=100.00 E-value=2.3e-56 Score=428.74 Aligned_cols=312 Identities=54% Similarity=0.816 Sum_probs=260.8
Q ss_pred CcCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcCceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh--
Q 038651 7 SSSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARAVGAYVVTFIVGRLSIINAIAGAYSENFPAATITA-- 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~-- 83 (324)
..+||+ ++.|+|.|+..+++|||+++||.+||||||||||.+|+|+|++|+|+|.+++++|||+||+|++|||+|.+
T Consensus 23 fgVPGDFNL~LLD~l~~~~~lrwvGn~NELNaAYAADGYAR~~Gi~a~VtTfgVGeLSAlNGIAGsYAE~vpVihIVG~P 102 (561)
T KOG1184|consen 23 FGVPGDFNLSLLDKLYAVPGLRWVGNCNELNAAYAADGYARSKGIGACVTTFGVGELSALNGIAGAYAENVPVIHIVGVP 102 (561)
T ss_pred EECCCcccHHHHHHhhhcCCceeecccchhhhhhhhcchhhhcCceEEEEEeccchhhhhcccchhhhhcCCEEEEECCC
Confidence 468999 99999999998899999999999999999999999999999999999999999999999999999999921
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 103 nt~~q~t~~LLHHTLG~gDF~vf~rm~k~vsc~~a~I~~~e~A~~~ID~aI~~~~~~~rPVYi~iP~n~~~~~~~~~~l~ 182 (561)
T KOG1184|consen 103 NTNDQGTQRLLHHTLGNGDFTVFHRMFKKVTCYTAMINDIEDAPEQIDKAIRTALKESKPVYIGVPANLADLPVPAFGLL 182 (561)
T ss_pred CcccccccchheeecCCCchHHHHHHHHhhhhHHhhhcCHhhhHHHHHHHHHHHHHhcCCeEEEeecccccCcCCcccCC
Confidence
Q ss_pred --------------------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc----------
Q 038651 84 --------------------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM---------- 127 (324)
Q Consensus 84 --------------------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~---------- 127 (324)
|.++|+|+|++|.-+++.++.++..+|++++++|++.|++|||.
T Consensus 183 ~~p~~~~~~~s~~e~~~~~v~~i~e~i~~~~~Pvil~~~~~~r~~~~~~~~~l~~~~~~p~~vtp~gKg~i~E~hp~y~G 262 (561)
T KOG1184|consen 183 PVPLDLSPKPSNKEGLEEAVDAILELINKAKKPVILGDPKLRRAKAESAFVELADATGFPVFVTPMGKGFIPESHPHYGG 262 (561)
T ss_pred CCCcccCCCCCcHHHHHHHHHHHHHHhhhccCCeeeccccccHHHHHHHHHHHHHhhCCCeeEeecccccccCcCCceee
Confidence 78999999999999999999999999999999999999999998
Q ss_pred -------------cccCCcEEEEEcCccCCcccccccccCCCC-EEEEcCCccccccCCChh-----hHHHHHHHh----
Q 038651 128 -------------IVEFADAYIFVESIFNDYSSVGYSLLLNKK-AILMQPDRIVVANGLLLP-----NRNTSAYES---- 184 (324)
Q Consensus 128 -------------~l~~aDlvl~lG~~~~~~~t~~~~~~~~~~-iI~id~d~~~i~~~~~~~-----d~l~~~~~~---- 184 (324)
+++.||++|.+|+-++|+++++|+..++++ +++++.|...+. +..|+ ++|+++...
T Consensus 263 vy~G~vs~~~~~e~vesaDlil~~G~~~sd~ss~~~~~~~k~~~~i~~~~d~v~i~-~~~f~~v~mk~~l~~Lak~I~~~ 341 (561)
T KOG1184|consen 263 VYWGAVSTPFVKEIVESADLIIFAGPLFNDYSSGGFSYLYKKKNAIEFHSDRVKIR-NATFGGVLMKDFLQELAKRIKKN 341 (561)
T ss_pred EEecccccHhHHHHHhhcCeEEEecccccccccceeEeecCccceEEEecceEEec-cccccceeHHHHHHHHHHhhccc
Confidence 889999999999999999999998777665 999999999887 55555 556554321
Q ss_pred ---hh---hccCCCCCCCCCCCCCCE-----------EecCCCeEEEecCchHHhhhHH---------------------
Q 038651 185 ---YH---RIYVPHGIPLKSNAHEPL-----------MLSGNTAVIAETGDSWFNCQKD--------------------- 226 (324)
Q Consensus 185 ---~~---~~~~~~~~~~~~~~~~~l-----------~~~~~~~vv~d~G~~~~~~~~~--------------------- 226 (324)
|+ +.+.+....+...+..+| ++.++++|++++|+++|+..+.
T Consensus 342 ~~~~~~y~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~d~v~~ETG~S~F~~~~~~fP~g~~~~~q~~wgsIG~sv 421 (561)
T KOG1184|consen 342 KTSYENYVRIPVPEPKPLACPPNAPLRQEWMWNHIQKFLSSGDVVIAETGDSWFGINQTKFPKGCGYESQMQWGSIGWSV 421 (561)
T ss_pred ccchhcccccCCCCCCCCCCCCcchhhHHHHHHHHHhhcCCCceEEEecccceecceeeccccccceEEEEEEeeccccc
Confidence 11 111111111111111111 4445555555555554443322
Q ss_pred ----------------------------HHHHHHHHhCCCeEEEEEeCCchhhhhhhhCCCCCCCCCCCHHHHHHHHHH-
Q 038651 227 ----------------------------VDVSTMLRCEQKNIIFLINNGNYTIEVEIHDGPYNVIENWNYTGLVEAFQN- 277 (324)
Q Consensus 227 ----------------------------qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~~~~~~l~~~df~~lA~a~G~- 277 (324)
||++|++|++||++|||+||++|.+++.+|+.+|+++.+|||.++-++||+
T Consensus 422 ga~lG~a~a~~e~rvilfiGDGs~qlTvQeiStmir~gl~~~if~~NN~GYTIE~~IH~~~Yn~I~~Wd~~~l~~afg~~ 501 (561)
T KOG1184|consen 422 GATLGYAQAAPEKRVILFIGDGSFQLTVQEISTMIRWGLKPIIFLINNGGYTIEVEIHDGPYNDIQNWDYTALLEAFGAG 501 (561)
T ss_pred hhhhhhhhccCCceEEEEecCccceeeHHHHHHHHhcCCCcEEEEEeCCceEEEEeecCCCccccccchHHHHHHhhcCc
Confidence 999999999999999999999999999999777999999999999999998
Q ss_pred -----------------HHHHhHHhCCCCeEEEEEEecCCCCcHHHHHHHHHhhhhcCC
Q 038651 278 -----------------AIETAAVEKKDCLCFIEAIVHKDDTGKELLKWGSRVSAANNR 319 (324)
Q Consensus 278 -----------------al~~a~~~~~~~p~lIeV~id~~~~~~~~~~~~~~~~~~~~~ 319 (324)
+.+++.+.+.+++.+|||+++.+|.|..|..|+.+..+.+++
T Consensus 502 ~gk~~~~~v~~~~e~~~~~~~~~~~~~~~i~liEv~l~~~D~p~~L~~~~~~~a~~n~k 560 (561)
T KOG1184|consen 502 EGKYETHKVRTEEELVEAIKDATFEKNDKIRLIEVILPVDDAPKELLEWGSLVAAANSK 560 (561)
T ss_pred cceeEEeeeccchHHHHHHhhhhhcccCceEEEEEecCcccChHHHHHHHHHhhhcccC
Confidence 555554456788999999999999999999999999888754
No 23
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=100.00 E-value=5.6e-56 Score=450.33 Aligned_cols=292 Identities=23% Similarity=0.290 Sum_probs=236.2
Q ss_pred CcCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh-
Q 038651 7 SSSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA- 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~- 83 (324)
..+||+ +++|+|+|.+ ++|++|.||||++|+||||||+|+|| +|||++|+|||++|+++||++||.|++|||+|++
T Consensus 27 FgipG~~~~~l~~al~~-~~i~~v~~~hE~~A~~~Adgyar~tg~~~v~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~G~ 105 (561)
T PRK06048 27 FGYPGGAIIPVYDELYD-SDLRHILVRHEQAAAHAADGYARATGKVGVCVATSGPGATNLVTGIATAYMDSVPIVALTGQ 105 (561)
T ss_pred EECCCcchHHHHHHHhh-CCCeEEEeccHHHHHHHHHHHHHHhCCCeEEEECCCCcHHHHHHHHHHHhhcCCCEEEEecc
Confidence 368999 9999999976 57999999999999999999999999 9999999999999999999999999999999952
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 106 ~~~~~~~~~~~q~~d~~~~~~~itk~s~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~dv~~~~~~~~~~~~~~~~~ 185 (561)
T PRK06048 106 VPRSMIGNDAFQEADITGITMPITKHNYLVQDAKDLPRIIKEAFHIASTGRPGPVLIDLPKDVTTAEIDFDYPDKVELRG 185 (561)
T ss_pred CCccccCCCCccccchhhhccCcceEEEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEecChhhhhcccccccCccccccc
Confidence
Q ss_pred ------------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc------------------
Q 038651 84 ------------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM------------------ 127 (324)
Q Consensus 84 ------------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~------------------ 127 (324)
|++||||+|++|+|++++++.+++++|||++|+||+||++|||+
T Consensus 186 ~~~~~~~~~~~i~~~a~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~lg~pV~tt~~~kg~~~~~hpl~~G~~g~~~~~ 265 (561)
T PRK06048 186 YKPTYKGNPQQIKRAAELIMKAERPIIYAGGGVISSNASEELVELAETIPAPVTTTLMGIGAIPTEHPLSLGMLGMHGTK 265 (561)
T ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCcccccHHHHHHHHHHHhCCCEEEccccCccCCCCCccccCCCCCCCCH
Confidence 78899999999999999999999999999999999999999998
Q ss_pred ----cccCCcEEEEEcCccCCcccccccccCCCC-EEEEcCCccccccCCChh------h---HHHHHHH--------hh
Q 038651 128 ----IVEFADAYIFVESIFNDYSSVGYSLLLNKK-AILMQPDRIVVANGLLLP------N---RNTSAYE--------SY 185 (324)
Q Consensus 128 ----~l~~aDlvl~lG~~~~~~~t~~~~~~~~~~-iI~id~d~~~i~~~~~~~------d---~l~~~~~--------~~ 185 (324)
++++|||||+||++++++.++.|..+.+.+ +||||.|+.+++ +.... | +|+++.+ .|
T Consensus 266 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~I~id~d~~~~~-~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~ 344 (561)
T PRK06048 266 YANYAIQESDLIIAVGARFDDRVTGKLASFAPNAKIIHIDIDPAEIS-KNVKVDVPIVGDAKQVLKSLIKYVQYCDRKEW 344 (561)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCChhhcCCCCeEEEEECCHHHhC-CCCCCCeEEEeCHHHHHHHHHHhccccCcHHH
Confidence 678999999999999988776665444444 999999999987 32221 2 3333221 12
Q ss_pred h-------hccCCC----CCCC----------C------------------------CCCCCCE----------------
Q 038651 186 H-------RIYVPH----GIPL----------K------------------------SNAHEPL---------------- 204 (324)
Q Consensus 186 ~-------~~~~~~----~~~~----------~------------------------~~~~~~l---------------- 204 (324)
. +.+... .... . ..+...+
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~p~~iiv~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaai 424 (561)
T PRK06048 345 LDKINQWKKEYPLKYKEREDVIKPQYVIEQIYELCPDAIIVTEVGQHQMWAAQYFKYKYPRTFITSGGLGTMGYGFPAAI 424 (561)
T ss_pred HHHHHHHHHhChhhccCCCCCcCHHHHHHHHHhhCCCcEEEEcCcHHHHHHHHhcccCCCCeEEeCCCccccccHHHHHH
Confidence 1 000000 0000 0 0000000
Q ss_pred ---EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhh----CCCC--CCC-CCCCHHHHHHH
Q 038651 205 ---MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIH----DGPY--NVI-ENWNYTGLVEA 274 (324)
Q Consensus 205 ---~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~----~~~~--~~l-~~~df~~lA~a 274 (324)
...|+..|++.+||++|.|.. |||+|++||++|+++||+||++|++++..| ...| .++ ++|||.++|++
T Consensus 425 Ga~la~p~~~Vv~i~GDG~f~m~~-~eL~Ta~~~~l~i~~vV~NN~~y~~i~~~~~~~~~~~~~~~~~~~~~d~~~lA~a 503 (561)
T PRK06048 425 GAKVGKPDKTVIDIAGDGSFQMNS-QELATAVQNDIPVIVAILNNGYLGMVRQWQELFYDKRYSHTCIKGSVDFVKLAEA 503 (561)
T ss_pred HHHHhCCCCcEEEEEeCchhhccH-HHHHHHHHcCCCeEEEEEECCccHHHHHHHHHHcCCcccccCCCCCCCHHHHHHH
Confidence 446788899999999999985 999999999999999999999999998664 2334 334 67999999999
Q ss_pred HHH-------------HHHHhHHhCCCCeEEEEEEecCCCCc
Q 038651 275 FQN-------------AIETAAVEKKDCLCFIEAIVHKDDTG 303 (324)
Q Consensus 275 ~G~-------------al~~a~~~~~~~p~lIeV~id~~~~~ 303 (324)
||+ +|++|+ ++++|+||||++++++.+
T Consensus 504 ~G~~~~~v~t~~el~~al~~a~--~~~~p~liev~~~~~~~~ 543 (561)
T PRK06048 504 YGALGLRVEKPSEVRPAIEEAV--ASDRPVVIDFIVECEENV 543 (561)
T ss_pred CCCeEEEECCHHHHHHHHHHHH--hCCCCEEEEEEecCcccc
Confidence 998 777775 789999999999987754
No 24
>PRK05858 hypothetical protein; Provisional
Probab=100.00 E-value=9.6e-56 Score=446.97 Aligned_cols=294 Identities=18% Similarity=0.170 Sum_probs=232.5
Q ss_pred CcCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh-
Q 038651 7 SSSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA- 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~- 83 (324)
..+||+ +++|+|++.+ .+|++|.+|||++|+||||||+|+|| +|||++|+|||++|+++||++||.|++|||+||+
T Consensus 24 Fg~pG~~~~~l~dal~~-~~i~~i~~rhE~~A~~~AdGyar~tg~~gv~~~t~GpG~~n~~~~i~~A~~~~~Pvl~i~g~ 102 (542)
T PRK05858 24 FTLSGGHLFPLYDGARE-EGIRLIDVRHEQTAAFAAEAWAKLTRVPGVAVLTAGPGVTNGMSAMAAAQFNQSPLVVLGGR 102 (542)
T ss_pred EeCCCcchHHHHHHHHh-cCCCEEeeccHHHHHHHHHHHHHhcCCCeEEEEcCCchHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 368999 9999999976 47999999999999999999999999 9999999999999999999999999999999952
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 103 ~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv~~~~~~~~~~~~~~~~~ 182 (542)
T PRK05858 103 APALRWGMGSLQEIDHVPFVAPVTKFAATAQSAENAGRLVDQALQAAVTPHRGPVFVDFPMDHAFSMADDDGRPGALTEL 182 (542)
T ss_pred CCcccCCCCCCcccchhhhhhhhhceEEEeCCHHHHHHHHHHHHHHHcCCCCCeEEEEcChhhhhccccccccccccccC
Confidence
Q ss_pred -----------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc---------------cccC
Q 038651 84 -----------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM---------------IVEF 131 (324)
Q Consensus 84 -----------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~---------------~l~~ 131 (324)
|++||||+|++|+|++++++.+++++|||++|+||+||++|||+ ++++
T Consensus 183 ~~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~lg~pV~tt~~~kg~~~~~hpl~~~~~~~~~l~~ 262 (542)
T PRK05858 183 PAGPTPDPDALARAAGLLAEAQRPVIMAGTDVWWGHAEAALLRLAEELGIPVLMNGMGRGVVPADHPLAFSRARGKALGE 262 (542)
T ss_pred CCCCCCCHHHHHHHHHHHHhCCCcEEEECCCccccChHHHHHHHHHHhCCCEEEcCCcCCCCCCCCchhhhHHHHHHHHh
Confidence 78999999999999998999999999999999999999999998 6889
Q ss_pred CcEEEEEcCccCCcccccccccCCCC-EEEEcCCccccccCCChh-----h---HHHHHHH---------hhhh------
Q 038651 132 ADAYIFVESIFNDYSSVGYSLLLNKK-AILMQPDRIVVANGLLLP-----N---RNTSAYE---------SYHR------ 187 (324)
Q Consensus 132 aDlvl~lG~~~~~~~t~~~~~~~~~~-iI~id~d~~~i~~~~~~~-----d---~l~~~~~---------~~~~------ 187 (324)
|||||++|+++++..+..+ +.+.+ +||||+|+.++++..... | +++++.+ .|..
T Consensus 263 aD~vl~vG~~~~~~~~~~~--~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~~~~~ 340 (542)
T PRK05858 263 ADVVLVVGVPMDFRLGFGV--FGGTAQLVHVDDAPPQRAHHRPVAAGLYGDLSAILSALAGAGGDRTDHQGWIEELRTAE 340 (542)
T ss_pred CCEEEEECCCCcccccccc--cCCCCEEEEECCCHHHhcCCCCCceEEeCCHHHHHHHHHHhcccccCcHHHHHHHHHHH
Confidence 9999999999876544322 22334 999999999887211111 2 2332210 1100
Q ss_pred -ccC--------CCCCCC----------CC-------------------------CCCCC--------E-----------
Q 038651 188 -IYV--------PHGIPL----------KS-------------------------NAHEP--------L----------- 204 (324)
Q Consensus 188 -~~~--------~~~~~~----------~~-------------------------~~~~~--------l----------- 204 (324)
.+. ....+. +. .+... +
T Consensus 341 ~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~ivv~d~g~~~~~~~~~~~~~~p~~~~~~~~~gsmG~~lp~aiGa~ 420 (542)
T PRK05858 341 TAARARDAAELADDRDPIHPMRVYGELAPLLDRDAIVIGDGGDFVSYAGRYIDPYRPGCWLDPGPFGCLGTGPGYALAAR 420 (542)
T ss_pred HhhhhhhhhhccCCCCCcCHHHHHHHHHHhcCCCeEEEECCcHHHHHHHHHccccCCCCEEeCCCccccccchhHHHHHH
Confidence 000 000000 00 00000 0
Q ss_pred EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhhCC-----CCCCC-CCCCHHHHHHHHHH-
Q 038651 205 MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIHDG-----PYNVI-ENWNYTGLVEAFQN- 277 (324)
Q Consensus 205 ~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~~-----~~~~l-~~~df~~lA~a~G~- 277 (324)
...|++.||+.+||++|.|+. |||+|++||++|+++||+||++|++++..+.. ...++ ++|||.++|++||+
T Consensus 421 la~p~r~vv~i~GDG~f~~~~-~eL~Ta~~~~lpi~ivV~NN~~y~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~ 499 (542)
T PRK05858 421 LARPSRQVVLLQGDGAFGFSL-MDVDTLVRHNLPVVSVIGNNGIWGLEKHPMEALYGYDVAADLRPGTRYDEVVRALGGH 499 (542)
T ss_pred HhCCCCcEEEEEcCchhcCcH-HHHHHHHHcCCCEEEEEEeCCchhhHHHHHHHhcCCccccccCCCCCHHHHHHHCCCe
Confidence 446788899999999999884 99999999999999999999999998865421 12344 67999999999998
Q ss_pred ------------HHHHhHHhCCCCeEEEEEEecCCCCcHHH
Q 038651 278 ------------AIETAAVEKKDCLCFIEAIVHKDDTGKEL 306 (324)
Q Consensus 278 ------------al~~a~~~~~~~p~lIeV~id~~~~~~~~ 306 (324)
+|++++ +.++|+||||++|+++.+|..
T Consensus 500 ~~~v~~~~eL~~al~~a~--~~~~p~lIev~~~~~~~~~~~ 538 (542)
T PRK05858 500 GELVTVPAELGPALERAF--ASGVPYLVNVLTDPSVAYPRR 538 (542)
T ss_pred EEEeCCHHHHHHHHHHHH--hCCCcEEEEEEECCCcCCCCC
Confidence 777775 789999999999998765543
No 25
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=100.00 E-value=2.8e-55 Score=446.80 Aligned_cols=298 Identities=17% Similarity=0.210 Sum_probs=234.0
Q ss_pred CcCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh-
Q 038651 7 SSSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA- 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~- 83 (324)
..+||+ +++|+|++.+ .+|++|.+|||++|+||||||+|+|| +|||++|+|||++|++|||++||.|++|||+|++
T Consensus 21 FGipG~~~~~l~dal~~-~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~~~gla~A~~~~~Pvl~I~g~ 99 (579)
T TIGR03457 21 FGIMGSAFMDAMDLFPP-AGIRFIPVVHEQGAGHMADGFARVTGRMSMVIGQNGPGVTNCVTAIAAAYWAHTPVVIVTPE 99 (579)
T ss_pred EEccCcchHHHHHHHhh-cCCeEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHHHhhcCCCEEEEeCC
Confidence 368999 9999999976 57999999999999999999999999 9999999999999999999999999999999952
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 100 ~~~~~~~~~~~Q~~d~~~l~~~vtk~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~ 179 (579)
T TIGR03457 100 AGTKTIGLGGFQEADQLPMFQEFTKYQGHVRHPSRMAEVLNRCFERAWREMGPAQLNIPRDYFYGEIDVEIPRPVRLDRG 179 (579)
T ss_pred CccccCCCCCCcccchhhhhhcceeEEEecCCHHHHHHHHHHHHHHHhcCCCCEEEEeCcchhhhhcccccCcccccCCC
Confidence
Q ss_pred -------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc----------------------c
Q 038651 84 -------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM----------------------I 128 (324)
Q Consensus 84 -------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~----------------------~ 128 (324)
|++||||+|++|+|+.++++.++|++|||++|+||+||++|||+ +
T Consensus 180 ~~~~~~i~~~~~~L~~A~rP~i~~G~g~~~~~a~~~l~~lae~~~~PV~tt~~gkg~~p~~hp~~~G~~g~~g~~~~~~~ 259 (579)
T TIGR03457 180 AGGATSLAQAARLLAEAKFPVIISGGGVVMGDAVEECKALAERLGAPVVNSYLHNDSFPASHPLWVGPLGYQGSKAAMKL 259 (579)
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEECcCccccChHHHHHHHHHHhCCCEEEcccccccCCCCCchhccCCcCcchHHHHHH
Confidence 88999999999999999999999999999999999999999997 6
Q ss_pred ccCCcEEEEEcCccCCccccc-c--cccCCCC-EEEEcCCccccccCCChh------h---HHHHHHH------------
Q 038651 129 VEFADAYIFVESIFNDYSSVG-Y--SLLLNKK-AILMQPDRIVVANGLLLP------N---RNTSAYE------------ 183 (324)
Q Consensus 129 l~~aDlvl~lG~~~~~~~t~~-~--~~~~~~~-iI~id~d~~~i~~~~~~~------d---~l~~~~~------------ 183 (324)
+++|||||+||++++++.+.. | ..+.+.. +||||.|+.+++ +.... | +|+++.+
T Consensus 260 l~~aDlil~lG~~~~~~~~~~~~~~~~~~~~~~~I~id~d~~~~~-~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~ 338 (579)
T TIGR03457 260 ISDADVVLALGTRLGPFGTLPQYGIDYWPKNAKIIQVDANAKMIG-LVKKVTVGICGDAKAAAAEILQRLAGKAGDANRA 338 (579)
T ss_pred HHhCCEEEEECCCCcccccccccccccCCCCCeEEEEeCCHHHhC-CCCCCCeeEecCHHHHHHHHHHhhhhcccccchh
Confidence 789999999999998765532 2 2223334 999999999987 32222 2 1222110
Q ss_pred -----------hhhh----ccC-C--------------CCCCC----------CC-------------------------
Q 038651 184 -----------SYHR----IYV-P--------------HGIPL----------KS------------------------- 198 (324)
Q Consensus 184 -----------~~~~----~~~-~--------------~~~~~----------~~------------------------- 198 (324)
.|.. ... . ..... ..
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~iv~~d~G~~~~~~~~~~~~~ 418 (579)
T TIGR03457 339 ERKAKIQAERSAWEQELSEMTHERDPFSLDMIVEQRQEEGNWLHPRQVLRELEKAMPEDAIVSTDIGNINSVANSYLRFE 418 (579)
T ss_pred hhhhhhhhhHHHHHHHHHHHHhhccccccccccccccCCCCCcCHHHHHHHHHHhCCCCeEEEECCchhHHHHHHhcCcC
Confidence 1100 000 0 00000 00
Q ss_pred CCCCC--------E-----------EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhhC--
Q 038651 199 NAHEP--------L-----------MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIHD-- 257 (324)
Q Consensus 199 ~~~~~--------l-----------~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~-- 257 (324)
.+... + ...|+..|++.+||++|.|+. |||+|++||++|+++||+||++|++++..|.
T Consensus 419 ~p~~~~~~~~~g~mG~~lpaaiGa~la~p~~~Vv~i~GDG~f~m~~-~eL~Tavr~~lpvi~vV~NN~~yg~i~~~~~~~ 497 (579)
T TIGR03457 419 KPRKFLAPMSFGNCGYAFPTIIGAKIAAPDRPVVAYAGDGAWGMSM-NEIMTAVRHDIPVTAVVFRNRQWGAEKKNQVDF 497 (579)
T ss_pred CCCeEEcCCccccccchHHHHHhhhhhCCCCcEEEEEcchHHhccH-HHHHHHHHhCCCeEEEEEECcchHHHHHHHHHh
Confidence 00000 0 456788899999999999985 9999999999999999999999999986652
Q ss_pred --CCC--CCCCC-CCHHHHHHHHHH-------------HHHHhHH-hCCCCeEEEEEEecCCCCcHHHH
Q 038651 258 --GPY--NVIEN-WNYTGLVEAFQN-------------AIETAAV-EKKDCLCFIEAIVHKDDTGKELL 307 (324)
Q Consensus 258 --~~~--~~l~~-~df~~lA~a~G~-------------al~~a~~-~~~~~p~lIeV~id~~~~~~~~~ 307 (324)
.+| .++.+ |||.++|++||+ +|++++. .+.++|+||||++|+++.||.-.
T Consensus 498 ~~~~~~~~~~~~~~d~~~lA~a~G~~g~~v~~~~el~~al~~a~~~~~~~~p~lieV~v~~~~~~~~~~ 566 (579)
T TIGR03457 498 YNNRFVGTELESELSFAGIADAMGAKGVVVDKPEDVGPALKKAIAAQAEGKTTVIEIVCTRELGDPFRR 566 (579)
T ss_pred hCCcceeccCCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHHhhCCCCCcEEEEEEeCCCcCCchhh
Confidence 222 34544 799999999998 7777641 02589999999999988766544
No 26
>PLN02470 acetolactate synthase
Probab=100.00 E-value=1.3e-55 Score=449.71 Aligned_cols=292 Identities=17% Similarity=0.218 Sum_probs=232.1
Q ss_pred CcCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh-
Q 038651 7 SSSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA- 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~- 83 (324)
..+||+ +++|+|+|.++++|++|.+|||++|+||||||+|+|| +|||++|+|||++|++|||++||.|++|||+||+
T Consensus 32 Fg~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~G~ 111 (585)
T PLN02470 32 FAYPGGASMEIHQALTRSNCIRNVLCRHEQGEVFAAEGYAKASGKVGVCIATSGPGATNLVTGLADALLDSVPLVAITGQ 111 (585)
T ss_pred EEcCCcccHHHHHHHhccCCceEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEecC
Confidence 368999 9999999976557999999999999999999999999 9999999999999999999999999999999942
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 112 ~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~i~~~l~~A~~~A~s~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~ 191 (585)
T PLN02470 112 VPRRMIGTDAFQETPIVEVTRSITKHNYLVMDVEDIPRVIREAFFLASSGRPGPVLVDIPKDIQQQLAVPNWNQPMKLPG 191 (585)
T ss_pred CChhhcCCCcCcccchhhhhhhheEEEEEcCCHHHHHHHHHHHHHHhcCCCCCeEEEEecCchhhhhccccccccccccc
Confidence
Q ss_pred --------------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc----------------
Q 038651 84 --------------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM---------------- 127 (324)
Q Consensus 84 --------------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~---------------- 127 (324)
|++||||+|++|+|+. ++.+++++|+|++++||+||++|||+
T Consensus 192 ~~~~~~~~~~~~~i~~~~~~L~~A~rPvI~~G~g~~--~a~~~l~~lae~~~~pv~tt~~gkg~~~~~hpl~~G~~G~~~ 269 (585)
T PLN02470 192 YLSRLPKPPEKSQLEQIVRLISESKRPVVYVGGGCL--NSSEELREFVELTGIPVASTLMGLGAFPASDELSLQMLGMHG 269 (585)
T ss_pred cCCCCCCCCCHHHHHHHHHHHHcCCCCEEEECCChh--hhHHHHHHHHHHhCCCEEEccCccccCCCCCcccccCCCCCC
Confidence 7889999999999996 57899999999999999999999998
Q ss_pred ------cccCCcEEEEEcCccCCcccccccccCCCC-EEEEcCCccccccCCChh------h---HHHHHHH--------
Q 038651 128 ------IVEFADAYIFVESIFNDYSSVGYSLLLNKK-AILMQPDRIVVANGLLLP------N---RNTSAYE-------- 183 (324)
Q Consensus 128 ------~l~~aDlvl~lG~~~~~~~t~~~~~~~~~~-iI~id~d~~~i~~~~~~~------d---~l~~~~~-------- 183 (324)
++++|||||+||++++++.++.|..+.+.. +||||+|+.+++ +.... | +|+++.+
T Consensus 270 ~~~~~~~~~~aDlvl~lG~~l~~~~~~~~~~~~~~~~~I~id~d~~~i~-~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~ 348 (585)
T PLN02470 270 TVYANYAVDSADLLLAFGVRFDDRVTGKLEAFASRASIVHIDIDPAEIG-KNKQPHVSVCADVKLALQGLNKLLEERKAK 348 (585)
T ss_pred CHHHHHHHHhCCEEEEECCCCcccccCChhhcCCCCeEEEEECCHHHhC-CCcCCCeEEecCHHHHHHHHHHhhhhcccc
Confidence 578999999999999988776665444444 999999999998 32222 2 2332211
Q ss_pred -----hhhh-------ccC---CCC-CCC----------CC-------------------------CCCCCE--------
Q 038651 184 -----SYHR-------IYV---PHG-IPL----------KS-------------------------NAHEPL-------- 204 (324)
Q Consensus 184 -----~~~~-------~~~---~~~-~~~----------~~-------------------------~~~~~l-------- 204 (324)
.|.+ .+. +.. ... .. .+...+
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~d~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~~g~m 428 (585)
T PLN02470 349 RPDFSAWRAELDEQKEKFPLSYPTFGDAIPPQYAIQVLDELTDGNAIISTGVGQHQMWAAQWYKYKEPRRWLTSGGLGAM 428 (585)
T ss_pred ccchHHHHHHHHHHHHhChhcccCCCCCcCHHHHHHHHHhhCCCCEEEEECCcHHHHHHHHhcccCCCCeEEcCCccccc
Confidence 1211 000 000 000 00 000000
Q ss_pred -----------EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhhC----CCC--CCCC---
Q 038651 205 -----------MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIHD----GPY--NVIE--- 264 (324)
Q Consensus 205 -----------~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~----~~~--~~l~--- 264 (324)
...|+..|++.+||++|.|.. |||+|++||++|++|||+||++|+++++.|. ..+ .++.
T Consensus 429 G~glpaaiGa~la~p~~~Vv~i~GDG~f~m~~-~eL~Ta~~~~l~v~ivV~NN~~yg~i~~~~~~~~~~~~~~~~~~~~~ 507 (585)
T PLN02470 429 GFGLPAAIGAAAANPDAIVVDIDGDGSFIMNI-QELATIHVENLPVKIMVLNNQHLGMVVQWEDRFYKANRAHTYLGDPD 507 (585)
T ss_pred cchHHHHHHHHHhCCCCcEEEEEccchhhccH-HHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHHhCCceeeeecCccc
Confidence 456788899999999999985 9999999999999999999999999987642 111 2222
Q ss_pred -----CCCHHHHHHHHHH-------------HHHHhHHhCCCCeEEEEEEecCCCCcH
Q 038651 265 -----NWNYTGLVEAFQN-------------AIETAAVEKKDCLCFIEAIVHKDDTGK 304 (324)
Q Consensus 265 -----~~df~~lA~a~G~-------------al~~a~~~~~~~p~lIeV~id~~~~~~ 304 (324)
.+||+++|++||+ +|++++ +.++|+||||++++++.++
T Consensus 508 ~~~~~~~d~~~iA~a~G~~~~~v~~~~el~~al~~a~--~~~~p~lieV~i~~~~~~~ 563 (585)
T PLN02470 508 AEAEIFPDFLKFAEGCKIPAARVTRKSDLREAIQKML--DTPGPYLLDVIVPHQEHVL 563 (585)
T ss_pred cccCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHH--hCCCCEEEEEEeCCccCcC
Confidence 2899999999998 777774 6899999999999877543
No 27
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=100.00 E-value=9.6e-56 Score=448.91 Aligned_cols=294 Identities=20% Similarity=0.238 Sum_probs=235.4
Q ss_pred CcCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh-
Q 038651 7 SSSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA- 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~- 83 (324)
..+||+ +++|+|+|.++++|++|.+|||++|+||||||||+|| +|||++|+|||++|+++||++||.|++|||+||+
T Consensus 32 FgvpG~~~~~l~dal~~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~G~ 111 (564)
T PRK08155 32 TGIPGGAILPLYDALSQSTQIRHILARHEQGAGFIAQGMARTTGKPAVCMACSGPGATNLVTAIADARLDSIPLVCITGQ 111 (564)
T ss_pred EeCCCcccHHHHHHHhccCCceEEEeccHHHHHHHHHHHHHHcCCCeEEEECCCCcHHHHHHHHHHHHhcCCCEEEEecc
Confidence 468999 9999999977568999999999999999999999999 9999999999999999999999999999999952
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 112 ~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~i~iP~Dv~~~~~~~~~~~~~~~~~ 191 (564)
T PRK08155 112 VPASMIGTDAFQEVDTYGISIPITKHNYLVRDIEELPQVISDAFRIAQSGRPGPVWIDIPKDVQTAVIELEALPAPAEKD 191 (564)
T ss_pred CCcccccCCCccccchhhhhhccceEEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhHHhhhcccccCCCccccC
Confidence
Q ss_pred ----------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc--------------------
Q 038651 84 ----------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM-------------------- 127 (324)
Q Consensus 84 ----------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~-------------------- 127 (324)
|++||||+|++|+|+.++++.+++++|+|++|+||+||++|||+
T Consensus 192 ~~~~~~~~~i~~~~~~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~~~~pv~tt~~~kg~i~~~hp~~~G~~g~~~~~~~ 271 (564)
T PRK08155 192 AAPAFDEESIRDAAAMINAAKRPVLYLGGGVINSGAPARARELAEKAQLPTTMTLMALGMLPKAHPLSLGMLGMHGARST 271 (564)
T ss_pred CCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccchHHHHHHHHHHHCCCEEEcccccccCCCCChhhccCCCCCCCHHH
Confidence 78899999999999999899999999999999999999999998
Q ss_pred --cccCCcEEEEEcCccCCcccccccccCCCC-EEEEcCCccccccCCChh---------hHHHHHHH--------hhhh
Q 038651 128 --IVEFADAYIFVESIFNDYSSVGYSLLLNKK-AILMQPDRIVVANGLLLP---------NRNTSAYE--------SYHR 187 (324)
Q Consensus 128 --~l~~aDlvl~lG~~~~~~~t~~~~~~~~~~-iI~id~d~~~i~~~~~~~---------d~l~~~~~--------~~~~ 187 (324)
++++|||||++|++++++.++.+..+.++. +||||+|+.+++ +.... ++|+++.+ .|.+
T Consensus 272 ~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~I~id~d~~~~~-~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~ 350 (564)
T PRK08155 272 NYILQEADLLIVLGARFDDRAIGKTEQFCPNAKIIHVDIDRAELG-KIKQPHVAIQADVDDVLAQLLPLVEAQPRAEWHQ 350 (564)
T ss_pred HHHHHhCCEEEEECCCCCccccCCHhhcCCCCeEEEEECCHHHhC-CCcCCCeEEecCHHHHHHHHHHhhcccchHHHHH
Confidence 578899999999999988776555444444 999999999887 22111 23433211 1210
Q ss_pred -------ccC---C-CCCCC----------CC-------------------------CCCCCE-----------------
Q 038651 188 -------IYV---P-HGIPL----------KS-------------------------NAHEPL----------------- 204 (324)
Q Consensus 188 -------~~~---~-~~~~~----------~~-------------------------~~~~~l----------------- 204 (324)
.+. + ...+. +. .+...+
T Consensus 351 ~~~~~~~~~~~~~~~~~~~l~~~~v~~~l~~~l~~~~iv~~D~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaaiG 430 (564)
T PRK08155 351 LVADLQREFPCPIPKADDPLSHYGLINAVAACVDDNAIITTDVGQHQMWTAQAYPLNRPRQWLTSGGLGTMGFGLPAAIG 430 (564)
T ss_pred HHHHHHHhChhhcccCCCCcCHHHHHHHHHHhCCCCeEEEECCchHHHHHHHhccccCCCeEEeCCCcccccchhHHHHH
Confidence 000 0 00000 00 000000
Q ss_pred --EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhhC----CCC--CCC-CCCCHHHHHHHH
Q 038651 205 --MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIHD----GPY--NVI-ENWNYTGLVEAF 275 (324)
Q Consensus 205 --~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~----~~~--~~l-~~~df~~lA~a~ 275 (324)
...|+..|++.+||++|.|. .|||+|++||++|+++||+||++|++++..|. .++ .++ .+|||+++|++|
T Consensus 431 a~la~~~~~vv~i~GDGsf~~~-~~eL~ta~~~~lpvi~vV~NN~~~g~~~~~q~~~~~~~~~~~~~~~~~d~~~~a~a~ 509 (564)
T PRK08155 431 AALANPERKVLCFSGDGSLMMN-IQEMATAAENQLDVKIILMNNEALGLVHQQQSLFYGQRVFAATYPGKINFMQIAAGF 509 (564)
T ss_pred HHHhCCCCcEEEEEccchhhcc-HHHHHHHHHhCCCeEEEEEeCCcccccHHHHHHhcCCCeeeccCCCCCCHHHHHHHC
Confidence 34678888899999999887 49999999999999999999999999886542 222 234 469999999999
Q ss_pred HH-------------HHHHhHHhCCCCeEEEEEEecCCCCcH
Q 038651 276 QN-------------AIETAAVEKKDCLCFIEAIVHKDDTGK 304 (324)
Q Consensus 276 G~-------------al~~a~~~~~~~p~lIeV~id~~~~~~ 304 (324)
|+ +|++++ +.++|+||||.+++++.++
T Consensus 510 G~~~~~v~~~~el~~al~~a~--~~~~p~lIeV~~~~~~~~~ 549 (564)
T PRK08155 510 GLETCDLNNEADPQAALQEAI--NRPGPALIHVRIDAEEKVY 549 (564)
T ss_pred CCeEEEeCCHHHHHHHHHHHH--hCCCCEEEEEEeCCCcccC
Confidence 98 777774 6889999999999877553
No 28
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=100.00 E-value=3.5e-55 Score=448.53 Aligned_cols=292 Identities=22% Similarity=0.249 Sum_probs=233.4
Q ss_pred CcCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh-
Q 038651 7 SSSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA- 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~- 83 (324)
..+||+ +++|+|+|.++++|++|.||||++|+||||||+|+|| +|||++|+|||++|+++||++||.|++|||+||+
T Consensus 50 FgipG~~~~~l~dal~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~l~gl~~A~~~~~PllvI~G~ 129 (612)
T PRK07789 50 FGIPGGAILPVYDPLFDSTKVRHVLVRHEQGAGHAAEGYAQATGRVGVCMATSGPGATNLVTPIADANMDSVPVVAITGQ 129 (612)
T ss_pred EEcCCcchHHHHHHHhccCCceEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHHHHHhhcCCCEEEEecC
Confidence 368999 9999999976568999999999999999999999999 9999999999999999999999999999999952
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 130 ~~~~~~~~~~~q~~d~~~l~~~~tk~s~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~ 209 (612)
T PRK07789 130 VGRGLIGTDAFQEADIVGITMPITKHNFLVTDADDIPRVIAEAFHIASTGRPGPVLVDIPKDALQAQTTFSWPPRMDLPG 209 (612)
T ss_pred CCccccCCCcCcccchhhhhhcceeEEEEcCCHHHHHHHHHHHHHHHhcCCCceEEEEEccchhhcccccccCccccccC
Confidence
Q ss_pred ------------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc------------------
Q 038651 84 ------------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM------------------ 127 (324)
Q Consensus 84 ------------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~------------------ 127 (324)
|++||||+|++|+|+.++++.+++++|+|++|+||+||++|||+
T Consensus 210 ~~~~~~p~~~~i~~~~~~L~~AkrPlIl~G~g~~~~~a~~~l~~lae~l~~PV~tt~~~kg~~p~~hpl~~G~~G~~~~~ 289 (612)
T PRK07789 210 YRPVTKPHGKQIREAAKLIAAARRPVLYVGGGVIRAEASAELRELAELTGIPVVTTLMARGAFPDSHPQHLGMPGMHGTV 289 (612)
T ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHCCCEEEcccccccCCCCChhhccCCcccCcH
Confidence 78899999999999999999999999999999999999999998
Q ss_pred ----cccCCcEEEEEcCccCCcccccccccCCCC-EEEEcCCccccccCCChh------h---HHHHHHH----------
Q 038651 128 ----IVEFADAYIFVESIFNDYSSVGYSLLLNKK-AILMQPDRIVVANGLLLP------N---RNTSAYE---------- 183 (324)
Q Consensus 128 ----~l~~aDlvl~lG~~~~~~~t~~~~~~~~~~-iI~id~d~~~i~~~~~~~------d---~l~~~~~---------- 183 (324)
++++|||||++|++++++.++.+..+.++. +||||+|+.+++ +.... | +|+++.+
T Consensus 290 ~~~~~l~~aDlvL~lG~~l~~~~t~~~~~~~~~~~~i~Id~d~~~i~-~~~~~~~~i~gD~~~~l~~L~~~l~~~~~~~~ 368 (612)
T PRK07789 290 AAVAALQRSDLLIALGARFDDRVTGKLDSFAPDAKVIHADIDPAEIG-KNRHADVPIVGDVKEVIAELIAALRAEHAAGG 368 (612)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCChhhcCCCCcEEEEECCHHHhC-CCCCCCeEEecCHHHHHHHHHHhhhhcccccc
Confidence 678999999999999888776554444444 999999999988 32221 2 2332211
Q ss_pred -----hhhh-------ccC----CC-CCCC----------CC-------------------------CCCCC--------
Q 038651 184 -----SYHR-------IYV----PH-GIPL----------KS-------------------------NAHEP-------- 203 (324)
Q Consensus 184 -----~~~~-------~~~----~~-~~~~----------~~-------------------------~~~~~-------- 203 (324)
.|.+ .+. .. .... .. .+...
T Consensus 369 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~p~~~~~~~~~G~ 448 (612)
T PRK07789 369 KPDLTAWWAYLDGWRETYPLGYDEPSDGSLAPQYVIERLGEIAGPDAIYVAGVGQHQMWAAQFIDYEKPRTWLNSGGLGT 448 (612)
T ss_pred cccHHHHHHHHHHHHHhCccccccccCCCcCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHhcccCCCCeEEcCCCccc
Confidence 1110 000 00 0000 00 00000
Q ss_pred E-----------EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhh----CCCC--CCC---
Q 038651 204 L-----------MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIH----DGPY--NVI--- 263 (324)
Q Consensus 204 l-----------~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~----~~~~--~~l--- 263 (324)
+ ...|+..|++.+||++|.|.. |||+|++||++|+++||+||++|++++..| ...+ .++
T Consensus 449 mG~glpaaiGa~la~p~~~Vv~i~GDG~f~m~~-~eL~Ta~~~~lpv~ivV~NN~~~g~i~~~q~~~~~~~~~~~~~~~~ 527 (612)
T PRK07789 449 MGYAVPAAMGAKVGRPDKEVWAIDGDGCFQMTN-QELATCAIEGIPIKVALINNGNLGMVRQWQTLFYEERYSNTDLHTH 527 (612)
T ss_pred ccchhhhHHhhhccCCCCcEEEEEcchhhhccH-HHHHHHHHcCCCeEEEEEECCchHHHHHHHHHhhCCCcceeecCcC
Confidence 0 445788899999999999985 999999999999999999999999998764 2233 233
Q ss_pred --CCCCHHHHHHHHHH-------------HHHHhHHhC-CCCeEEEEEEecCCCC
Q 038651 264 --ENWNYTGLVEAFQN-------------AIETAAVEK-KDCLCFIEAIVHKDDT 302 (324)
Q Consensus 264 --~~~df~~lA~a~G~-------------al~~a~~~~-~~~p~lIeV~id~~~~ 302 (324)
+.|||+++|++||+ +|++|+ + .++|+||||++|+++.
T Consensus 528 ~~~~~d~~~lA~a~G~~~~~V~~~~eL~~al~~a~--~~~~~p~lIev~i~~~~~ 580 (612)
T PRK07789 528 SHRIPDFVKLAEAYGCVGLRCEREEDVDAVIEKAR--AINDRPVVIDFVVGKDAM 580 (612)
T ss_pred CCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHH--hcCCCcEEEEEEECCccc
Confidence 24899999999998 777774 4 4899999999998653
No 29
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=100.00 E-value=1.6e-55 Score=448.90 Aligned_cols=293 Identities=22% Similarity=0.255 Sum_probs=234.3
Q ss_pred CcCCCC-chHHHHhhhcC---CCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhh
Q 038651 7 SSSPAD-SSSLLDHLIAE---PGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATI 81 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~---~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~I 81 (324)
..+||+ +++|+|+|.+. ++|++|.+|||++|+||||||+|+|| +|||++|+|||++|+++||++||.|++|||+|
T Consensus 29 FgipG~~~~~l~d~l~~~~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I 108 (585)
T CHL00099 29 FGYPGGAILPIYDELYAWEKKGLIKHILVRHEQGAAHAADGYARSTGKVGVCFATSGPGATNLVTGIATAQMDSVPLLVI 108 (585)
T ss_pred EeCCCcchHHHHHHHHhcCcCCCceEEEecCHHHHHHHHHHHHHhcCCcEEEEECCCCcHHHHHHHHHHHhhcCCCEEEE
Confidence 468999 99999999642 24999999999999999999999999 99999999999999999999999999999999
Q ss_pred hh------------------------------------------------------------------------------
Q 038651 82 TA------------------------------------------------------------------------------ 83 (324)
Q Consensus 82 t~------------------------------------------------------------------------------ 83 (324)
++
T Consensus 109 ~G~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~~~~~GPV~l~iP~Dv~~~~~~~~~~~~~~ 188 (585)
T CHL00099 109 TGQVGRAFIGTDAFQEVDIFGITLPIVKHSYVVRDARDISRIVAEAFYIAKHGRPGPVLIDIPKDVGLEKFDYYPPEPGN 188 (585)
T ss_pred ecCCCccccCCCCccccchhhhhcCceeEEEEeCCHHHHHHHHHHHHHHHccCCCCeEEEecChhhhhhhcccccccccc
Confidence 42
Q ss_pred -------------------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc-----------
Q 038651 84 -------------------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM----------- 127 (324)
Q Consensus 84 -------------------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~----------- 127 (324)
|++||||+|++|+|+.++++.+++++|+|++|+||+||++|||+
T Consensus 189 ~~~~~~~~~~~~~~~~~~v~~a~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~lg~PV~tt~~~kg~~~~~hpl~~G~ 268 (585)
T CHL00099 189 TIIKILGCRPIYKPTIKRIEQAAKLILQSSQPLLYVGGGAIISDAHQEITELAELYKIPVTTTLMGKGIFDEDHPLCLGM 268 (585)
T ss_pred cccccccCCCCCCCCHHHHHHHHHHHHcCCCcEEEECCCCchhchHHHHHHHHHHHCCCEEEccccCcCCCCCCCcccCC
Confidence 78899999999999999999999999999999999999999998
Q ss_pred -----------cccCCcEEEEEcCccCCcccccccccCCCC-EEEEcCCccccccCCChh------h---HHHHHHH---
Q 038651 128 -----------IVEFADAYIFVESIFNDYSSVGYSLLLNKK-AILMQPDRIVVANGLLLP------N---RNTSAYE--- 183 (324)
Q Consensus 128 -----------~l~~aDlvl~lG~~~~~~~t~~~~~~~~~~-iI~id~d~~~i~~~~~~~------d---~l~~~~~--- 183 (324)
++++|||||++|++++++.++.+..+.++. +||||.|+.+++ +...+ | +|+++.+
T Consensus 269 ~G~~~~~~~~~~l~~aDlvL~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~i~-~~~~~~~~i~~D~~~~L~~L~~~l~ 347 (585)
T CHL00099 269 LGMHGTAYANFAVSECDLLIALGARFDDRVTGKLDEFACNAQVIHIDIDPAEIG-KNRIPQVAIVGDVKKVLQELLELLK 347 (585)
T ss_pred CCCCCCHHHHHHHHhCCEEEEECCCCcccccCCHhHcCCCCeEEEEECCHHHhC-CCCCCCeEEecCHHHHHHHHHHHhh
Confidence 568999999999999988776554444444 999999999987 33222 2 2332211
Q ss_pred ------------hhhh-------ccC---CC-CCCC----------CC-----------------------CCCCCE---
Q 038651 184 ------------SYHR-------IYV---PH-GIPL----------KS-----------------------NAHEPL--- 204 (324)
Q Consensus 184 ------------~~~~-------~~~---~~-~~~~----------~~-----------------------~~~~~l--- 204 (324)
.|.+ .+. +. .... +. .+...+
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~d~iv~~d~G~~~~~~~~~~~~~~~~~~~~~ 427 (585)
T CHL00099 348 NSPNLLESEQTQAWRERINRWRKEYPLLIPKPSTSLSPQEVINEISQLAPDAYFTTDVGQHQMWAAQFLKCKPRKWLSSA 427 (585)
T ss_pred hcccccccchHHHHHHHHHHHHHhChhhccccCCCcCHHHHHHHHHhhCCCeEEEECCcHHHHHHHHhccCCCCcEEcCc
Confidence 1210 000 00 0000 00 011101
Q ss_pred ----------------EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhhC----CCCC---
Q 038651 205 ----------------MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIHD----GPYN--- 261 (324)
Q Consensus 205 ----------------~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~----~~~~--- 261 (324)
...|+..|++.+||++|.|+. |||+||+||++|+++||+||++|++++..|. ..+.
T Consensus 428 ~~g~mG~glpaaiGaala~p~~~vv~i~GDG~f~m~~-~eL~Ta~~~~l~~~~vV~NN~~y~~i~~~q~~~~~~~~~~~~ 506 (585)
T CHL00099 428 GLGTMGYGLPAAIGAQIAHPNELVICISGDASFQMNL-QELGTIAQYNLPIKIIIINNKWQGMVRQWQQAFYGERYSHSN 506 (585)
T ss_pred cccchhhhHHHHHHHHHhCCCCeEEEEEcchhhhhhH-HHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCCccccc
Confidence 446788899999999999985 9999999999999999999999999987652 2332
Q ss_pred -CCCCCCHHHHHHHHHH-------------HHHHhHHhCCCCeEEEEEEecCCCCc
Q 038651 262 -VIENWNYTGLVEAFQN-------------AIETAAVEKKDCLCFIEAIVHKDDTG 303 (324)
Q Consensus 262 -~l~~~df~~lA~a~G~-------------al~~a~~~~~~~p~lIeV~id~~~~~ 303 (324)
+.++|||.++|++||+ +|++++ +.++|+||||.+|+++.+
T Consensus 507 ~~~~~~d~~~la~a~G~~~~~v~~~~el~~al~~a~--~~~~p~liev~v~~~~~~ 560 (585)
T CHL00099 507 MEEGAPDFVKLAEAYGIKGLRIKSRKDLKSSLKEAL--DYDGPVLIDCQVIEDENC 560 (585)
T ss_pred CCCCCCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHH--hCCCCEEEEEEECCCccc
Confidence 2246999999999998 677764 688999999999987754
No 30
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=100.00 E-value=4.9e-55 Score=442.88 Aligned_cols=293 Identities=22% Similarity=0.268 Sum_probs=231.1
Q ss_pred CcCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh-
Q 038651 7 SSSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA- 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~- 83 (324)
..+||+ +++++|++.+ ++|++|.+|||++|+||||||+|+|| +|||++|+|||++|++|||++||.|++|||+|++
T Consensus 22 FGvpG~~~~~l~~~~~~-~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~~gia~A~~~~~Pvl~I~G~ 100 (554)
T TIGR03254 22 YGVVGIPVTDLARLAQA-KGMRYIGFRHEQSAGYAAAAAGFLTQKPGVCLTVSAPGFLNGLTALANATTNCFPMIMISGS 100 (554)
T ss_pred EeCCCcchhHHHHHHhh-cCCcEEEeCCHHHHHHHHHHHHHHhCCCEEEEEccCccHHhHHHHHHHHHhcCCCEEEEEcc
Confidence 358999 9999999975 58999999999999999999999999 9999999999999999999999999999999942
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 101 ~~~~~~~~~~~~~q~~d~~~~~~~vtk~~~~v~~~~~~~~~i~rA~~~A~~~~pGPV~l~iP~Dv~~~~~~~~~~~~~~~ 180 (554)
T TIGR03254 101 SERHIVDLQQGDYEEMDQLAAAKPFAKAAYRVLRAEDIGIGIARAIRTAVSGRPGGVYLDLPAAVLGQTMEAEKAKKTLV 180 (554)
T ss_pred CCccccccCCCCcchhhHHHHhhhhheeEEEcCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHHHhhccccccccccccc
Confidence
Q ss_pred ----------------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc--------------
Q 038651 84 ----------------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM-------------- 127 (324)
Q Consensus 84 ----------------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~-------------- 127 (324)
|++||||+|++|+|++++++.+++++|+|++|+||+||++|||+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~L~~AkrPvi~~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~~p~~hp~~~g~~~~ 260 (554)
T TIGR03254 181 KVVDPAPKQLPSPDSVDRAVELLKDAKRPLILLGKGAAYAQADEEIREFVEKTGIPFLPMSMAKGLLPDTHPQSAAAARS 260 (554)
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccChHHHHHHHHHHHCCCEEEcCCcceeCCCCCchhhhHHHH
Confidence 78899999999999999999999999999999999999999998
Q ss_pred -cccCCcEEEEEcCccCCccccccc-ccCCCC-EEEEcCCccccccCCChh-------h---HHHHHHH-----------
Q 038651 128 -IVEFADAYIFVESIFNDYSSVGYS-LLLNKK-AILMQPDRIVVANGLLLP-------N---RNTSAYE----------- 183 (324)
Q Consensus 128 -~l~~aDlvl~lG~~~~~~~t~~~~-~~~~~~-iI~id~d~~~i~~~~~~~-------d---~l~~~~~----------- 183 (324)
++++|||||++|++|+++.+..+. .+.+.+ +||||.|+.+++ +.++ | +|+++.+
T Consensus 261 ~~~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~vI~id~d~~~~~--~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~ 338 (554)
T TIGR03254 261 FALAEADVVMLVGARLNWLLSHGKGKLWGEDAKFIQVDIEPTEMD--SNRPIAAPVVGDIGSVVQALLSAAKNGGVKPPA 338 (554)
T ss_pred HHHhcCCEEEEECCCCchhhccCchhhcCCCCcEEEcCCCHHHhC--CCcCCceEEecCHHHHHHHHHHHhhhccccchH
Confidence 689999999999999988776553 333344 999999999887 2222 2 2322211
Q ss_pred hhhh-------ccC----C----CCCCC----------C-C--------------------------CCCCCE-------
Q 038651 184 SYHR-------IYV----P----HGIPL----------K-S--------------------------NAHEPL------- 204 (324)
Q Consensus 184 ~~~~-------~~~----~----~~~~~----------~-~--------------------------~~~~~l------- 204 (324)
.|.+ .+. . ...+. + . .+...+
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~~~ivv~d~~~~~~~~~~~~~~~~p~~~~~~~~~gs 418 (554)
T TIGR03254 339 DWRNAIKTKSEKNVAKMAERLSASESPMNYHGALEAIRDVLKDNPDIYLVNEGANTLDLARNVIDMYKPRHRLDVGTWGV 418 (554)
T ss_pred HHHHHHHHHHHhchhhhhhhcccCCCCcCHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHhcccCCCCcEeeCCCCCc
Confidence 1210 000 0 00000 0 0 000001
Q ss_pred -----------EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhh--hhC--CCCCCC-CCCCH
Q 038651 205 -----------MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVE--IHD--GPYNVI-ENWNY 268 (324)
Q Consensus 205 -----------~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~--~~~--~~~~~l-~~~df 268 (324)
.+.++..||+.+||++|.|+. |||+|++||++|+++||+||++|...+. .+. ..+.++ ++|||
T Consensus 419 mG~~lpaaiGaala~~~~vv~i~GDGsf~m~~-~EL~Ta~r~~l~v~~vV~NN~~~~~~~~~~~~~~~~~~~~~~~~~df 497 (554)
T TIGR03254 419 MGIGMGYAIAAAVETGKPVVALEGDSAFGFSG-MEVETICRYNLPVCVVIFNNGGIYRGDDVNVVGADPAPTVLVHGARY 497 (554)
T ss_pred CCchHHHHHHHHhcCCCcEEEEEcCchhcccH-HHHHHHHHcCCCEEEEEEeChhhhhhhhhhhcCCCCCccccCCCCCH
Confidence 234578899999999999985 9999999999999999999999832211 111 234555 78999
Q ss_pred HHHHHHHHH-------------HHHHhHHhCCCCeEEEEEEecCCCCcHH
Q 038651 269 TGLVEAFQN-------------AIETAAVEKKDCLCFIEAIVHKDDTGKE 305 (324)
Q Consensus 269 ~~lA~a~G~-------------al~~a~~~~~~~p~lIeV~id~~~~~~~ 305 (324)
+++|++||+ +|++|+ +.++|+||||++|+++.++.
T Consensus 498 ~~la~a~G~~~~~v~~~~el~~al~~a~--~~~~p~lIev~id~~~~~~~ 545 (554)
T TIGR03254 498 DKMMKAFGGVGYNVTTPDELKAALNEAL--ASGKPTLINAVIDPSAGTES 545 (554)
T ss_pred HHHHHHCCCeEEEeCCHHHHHHHHHHHH--hCCCCEEEEEEECCCcCCcc
Confidence 999999998 777774 68899999999999876643
No 31
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=100.00 E-value=3.7e-55 Score=444.01 Aligned_cols=294 Identities=20% Similarity=0.267 Sum_probs=236.4
Q ss_pred CcCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh-
Q 038651 7 SSSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA- 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~- 83 (324)
..+||+ +++|+|+|.++++|++|.+|||++|+||||||+|+|| +|||++|+|||++|+++||++||.|++|||+||+
T Consensus 27 Fg~pG~~~~~l~~al~~~~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~g~ 106 (557)
T PRK08199 27 FCVPGESYLAVLDALHDETDIRVIVCRQEGGAAMMAEAYGKLTGRPGICFVTRGPGATNASIGVHTAFQDSTPMILFVGQ 106 (557)
T ss_pred EeCCCcchhHHHHHhhccCCCcEEEeccHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHhhcCCCEEEEecC
Confidence 468999 9999999987657999999999999999999999999 9999999999999999999999999999999952
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 107 ~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~~~~A~~~A~~~~~GPV~l~iP~dl~~~~~~~~~~~~~~~~~ 186 (557)
T PRK08199 107 VARDFREREAFQEIDYRRMFGPMAKWVAEIDDAARIPELVSRAFHVATSGRPGPVVLALPEDVLSETAEVPDAPPYRRVA 186 (557)
T ss_pred CccccCCCCcccccCHHHhhhhhhceeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEcCHhHhhCcccccccCCcCCCC
Confidence
Q ss_pred --------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc----------------------
Q 038651 84 --------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM---------------------- 127 (324)
Q Consensus 84 --------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~---------------------- 127 (324)
|++||||+|++|+|+.++++.+++++|+|++|+||++|++|||+
T Consensus 187 ~~~~~~~i~~~~~~L~~A~rPvi~~G~g~~~~~a~~~l~~lae~~~~pV~tt~~~kg~~~~~hp~~~G~~g~~~~~~~~~ 266 (557)
T PRK08199 187 AAPGAADLARLAELLARAERPLVILGGSGWTEAAVADLRAFAERWGLPVACAFRRQDLFDNRHPNYAGDLGLGINPALAA 266 (557)
T ss_pred CCCCHHHHHHHHHHHHhCCCCEEEECCCcCchhHHHHHHHHHHHhCCCEEEcCCcCCCCCCCChhhccCCcCcCCHHHHH
Confidence 88999999999999999999999999999999999999999998
Q ss_pred cccCCcEEEEEcCccCCcccccccccC---CCC-EEEEcCCccccccCCChh------h---HHHHHHH-------hhhh
Q 038651 128 IVEFADAYIFVESIFNDYSSVGYSLLL---NKK-AILMQPDRIVVANGLLLP------N---RNTSAYE-------SYHR 187 (324)
Q Consensus 128 ~l~~aDlvl~lG~~~~~~~t~~~~~~~---~~~-iI~id~d~~~i~~~~~~~------d---~l~~~~~-------~~~~ 187 (324)
++++|||||++|++++++.++.|.... +.. +||||.|+.+++ +.... | +|+++.+ .|.+
T Consensus 267 ~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~~~i~vd~d~~~~~-~~~~~~~~i~~D~~~~l~~L~~~~~~~~~~~~~ 345 (557)
T PRK08199 267 RIREADLVLAVGTRLGEVTTQGYTLLDIPVPRQTLVHVHPDAEELG-RVYRPDLAIVADPAAFAAALAALEPPASPAWAE 345 (557)
T ss_pred HHHhCCEEEEeCCCCccccccccccccccCCCCeEEEEeCCHHHhC-CccCCCeEEecCHHHHHHHHHhcccccchhHHH
Confidence 567999999999999988776554322 334 999999999987 32211 2 3333211 1110
Q ss_pred -------ccC----C--CCCCC----------C-------------------------CCCCC-------CE--------
Q 038651 188 -------IYV----P--HGIPL----------K-------------------------SNAHE-------PL-------- 204 (324)
Q Consensus 188 -------~~~----~--~~~~~----------~-------------------------~~~~~-------~l-------- 204 (324)
.+. . ..... . ..+.. .+
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ii~~d~g~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaai 425 (557)
T PRK08199 346 WTAAAHADYLAWSAPLPGPGAVQLGEVMAWLRERLPADAIITNGAGNYATWLHRFFRFRRYRTQLAPTSGSMGYGLPAAI 425 (557)
T ss_pred HHHHHHHHHHhhccccCCCCCcCHHHHHHHHHHhCCCCeEEEECChHHHHHHHHhcCcCCCCeEECCCCccccchHHHHH
Confidence 000 0 00000 0 00000 01
Q ss_pred ---EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhhC----CCC--CCCCCCCHHHHHHHH
Q 038651 205 ---MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIHD----GPY--NVIENWNYTGLVEAF 275 (324)
Q Consensus 205 ---~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~----~~~--~~l~~~df~~lA~a~ 275 (324)
+..|+..|++.+||++|.+.. |||+|++||++|+++||+||++|++++..|. +.+ +++.+|||.++|++|
T Consensus 426 Ga~la~p~~~vv~i~GDGsf~~~~-~el~ta~~~~l~i~~vv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~ 504 (557)
T PRK08199 426 AAKLLFPERTVVAFAGDGCFLMNG-QELATAVQYGLPIIVIVVNNGMYGTIRMHQEREYPGRVSGTDLTNPDFAALARAY 504 (557)
T ss_pred HHHHhCCCCcEEEEEcchHhhccH-HHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCccccccCCCCCHHHHHHHC
Confidence 446788999999999999875 9999999999999999999999999876542 222 567789999999999
Q ss_pred HH-------------HHHHhHHhCCCCeEEEEEEecCCCCcH
Q 038651 276 QN-------------AIETAAVEKKDCLCFIEAIVHKDDTGK 304 (324)
Q Consensus 276 G~-------------al~~a~~~~~~~p~lIeV~id~~~~~~ 304 (324)
|+ +|++++ +.++|+||||++|+++.|+
T Consensus 505 G~~~~~v~~~~el~~al~~a~--~~~gp~li~v~~~~~~~~~ 544 (557)
T PRK08199 505 GGHGETVERTEDFAPAFERAL--ASGKPALIEIRIDPEAITP 544 (557)
T ss_pred CCeEEEeCCHHHHHHHHHHHH--hCCCCEEEEEEeCHHHcCC
Confidence 98 666664 6889999999999887765
No 32
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=100.00 E-value=4.8e-55 Score=444.40 Aligned_cols=293 Identities=16% Similarity=0.192 Sum_probs=235.2
Q ss_pred CcCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh-
Q 038651 7 SSSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA- 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~- 83 (324)
..+||+ +++|+|++.+ .+|++|.+|||++|+||||||+|+|| +|||++|+|||++|+++||++||.|++|||+||+
T Consensus 35 Fg~pG~~~~~l~~al~~-~~i~~i~~~hE~~A~~~A~gyar~tg~~gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~ItG~ 113 (571)
T PRK07710 35 FGYPGGAVLPLYDALYD-CGIPHILTRHEQGAIHAAEGYARISGKPGVVIATSGPGATNVVTGLADAMIDSLPLVVFTGQ 113 (571)
T ss_pred EeCCCcchHHHHHHHHh-cCCcEEEeCCHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEecc
Confidence 468999 9999999976 47999999999999999999999999 9999999999999999999999999999999952
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 114 ~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~ 193 (571)
T PRK07710 114 VATSVIGSDAFQEADIMGITMPVTKHNYQVRKASDLPRIIKEAFHIATTGRPGPVLIDIPKDMVVEEGEFCYDVQMDLPG 193 (571)
T ss_pred CCccccCCCCccccchhhhhhcccceEEecCCHHHHHHHHHHHHHHHhcCCCCcEEEEcChhHhhccccccccccccccC
Confidence
Q ss_pred ------------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc------------------
Q 038651 84 ------------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM------------------ 127 (324)
Q Consensus 84 ------------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~------------------ 127 (324)
|++||||+|++|+|++++++.+++++|+|++|+||+||++|||+
T Consensus 194 ~~~~~~~~~~~i~~~~~~L~~A~rPvIl~G~g~~~~~a~~~l~~lae~~~~pv~tt~~~kg~i~~~hpl~~G~~G~~~~~ 273 (571)
T PRK07710 194 YQPNYEPNLLQIRKLVQAVSVAKKPVILAGAGVLHAKASKELTSYAEQQEIPVVHTLLGLGGFPADHPLFLGMAGMHGTY 273 (571)
T ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCcCccchHHHHHHHHHHhCCCEEEcCccCccCCCCCccccCCCCCCCCH
Confidence 67899999999999998899999999999999999999999997
Q ss_pred ----cccCCcEEEEEcCccCCcccccccccCCCC-EEEEcCCccccccCCChh------h---HHHHHHH---------h
Q 038651 128 ----IVEFADAYIFVESIFNDYSSVGYSLLLNKK-AILMQPDRIVVANGLLLP------N---RNTSAYE---------S 184 (324)
Q Consensus 128 ----~l~~aDlvl~lG~~~~~~~t~~~~~~~~~~-iI~id~d~~~i~~~~~~~------d---~l~~~~~---------~ 184 (324)
++++|||||+||++++++.++.|..+.++. +||||.|+.+++ +.... | +|+++.+ .
T Consensus 274 ~~~~~l~~aDlvL~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~ig-~~~~~~~~i~~D~~~~l~~L~~~~~~~~~~~~ 352 (571)
T PRK07710 274 TANMALYECDLLINIGARFDDRVTGNLAYFAKEATVAHIDIDPAEIG-KNVPTEIPIVADAKQALQVLLQQEGKKENHHE 352 (571)
T ss_pred HHHHHHHhCCEEEEeCCCCCccccCchhhcCCCCeEEEEECCHHHhc-CcCCCCeEEecCHHHHHHHHHHhhhccCCcHH
Confidence 578999999999999988776555444444 999999999987 32221 2 2333211 1
Q ss_pred hhh-------cc----CCCCCCC----------CC-------------------------CCCCC--------E------
Q 038651 185 YHR-------IY----VPHGIPL----------KS-------------------------NAHEP--------L------ 204 (324)
Q Consensus 185 ~~~-------~~----~~~~~~~----------~~-------------------------~~~~~--------l------ 204 (324)
|.+ .. ....... .. .+... +
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpa 432 (571)
T PRK07710 353 WLSLLKNWKEKYPLSYKRNSESIKPQKAIEMLYEITKGEAIVTTDVGQHQMWAAQYYPFKTPDKWVTSGGLGTMGFGLPA 432 (571)
T ss_pred HHHHHHHHHHhChhhhcCCCCCcCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHhcccCCCCeEEcCCCcccccchHHH
Confidence 211 00 0000000 00 00000 0
Q ss_pred -----EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhh----CCCC--CCC-CCCCHHHHH
Q 038651 205 -----MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIH----DGPY--NVI-ENWNYTGLV 272 (324)
Q Consensus 205 -----~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~----~~~~--~~l-~~~df~~lA 272 (324)
...|+..|++.+||++|.|.. |||+|++||++|+++||+||++|++++..| ...| .++ .+|||+++|
T Consensus 433 AiGaala~p~~~vv~i~GDGsf~m~~-~eL~ta~r~~lpi~ivV~NN~~~~~i~~~~~~~~~~~~~~~~~~~~~d~~~~A 511 (571)
T PRK07710 433 AIGAQLAKPDETVVAIVGDGGFQMTL-QELSVIKELSLPVKVVILNNEALGMVRQWQEEFYNQRYSHSLLSCQPDFVKLA 511 (571)
T ss_pred HHHHHHhCCCCcEEEEEcchHHhhhH-HHHHHHHHhCCCeEEEEEECchHHHHHHHHHHHhCCcceeccCCCCCCHHHHH
Confidence 446788899999999999874 999999999999999999999999998765 2233 233 469999999
Q ss_pred HHHHH-------------HHHHhHHhCCCCeEEEEEEecCCCCcH
Q 038651 273 EAFQN-------------AIETAAVEKKDCLCFIEAIVHKDDTGK 304 (324)
Q Consensus 273 ~a~G~-------------al~~a~~~~~~~p~lIeV~id~~~~~~ 304 (324)
++||+ ++++++ +.++|+||||.+|+++.++
T Consensus 512 ~a~G~~~~~v~~~~el~~al~~a~--~~~~p~lieV~vd~~~~~~ 554 (571)
T PRK07710 512 EAYGIKGVRIDDELEAKEQLQHAI--ELQEPVVIDCRVLQSEKVM 554 (571)
T ss_pred HHCCCeEEEECCHHHHHHHHHHHH--hCCCCEEEEEEecCccccc
Confidence 99998 777774 6889999999999877554
No 33
>PRK07064 hypothetical protein; Provisional
Probab=100.00 E-value=7.5e-55 Score=440.59 Aligned_cols=288 Identities=19% Similarity=0.222 Sum_probs=230.7
Q ss_pred cCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh--
Q 038651 8 SSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA-- 83 (324)
Q Consensus 8 ~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~-- 83 (324)
.+||+ +++|+|++.++++|++|.+|||++|+||||||+|+|| +|||++|+|||++|+++||++||.|++|||+||+
T Consensus 23 gvpG~~~~~l~~al~~~~~i~~i~~~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~N~~~~i~~A~~~~~Pvl~i~g~~ 102 (544)
T PRK07064 23 GVISIHNMPILDAIGRRGKIRFVPARGEAGAVNMADAHARVSGGLGVALTSTGTGAGNAAGALVEALTAGTPLLHITGQI 102 (544)
T ss_pred eCCCCcchHHHHHHhccCCccEEeeccHHHHHHHHHHHHHhcCCCeEEEeCCCCcHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 58999 9999999976568999999999999999999999999 9999999999999999999999999999999942
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 103 ~~~~~~~~~~~~~~~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~dv~~~~~~~~~~~~~~~ 182 (544)
T PRK07064 103 ETPYLDQDLGYIHEAPDQLTMLRAVSKAAFRVRSAETALATIREAVRVALTAPTGPVSVEIPIDIQAAEIELPDDLAPVH 182 (544)
T ss_pred CcccccCCCcccccccCHHHHhhhhcceEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEeCHhHhhccccccccccccc
Confidence
Q ss_pred -----------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc-------------------
Q 038651 84 -----------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM------------------- 127 (324)
Q Consensus 84 -----------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~------------------- 127 (324)
|++||||+|++|+|+. ++.++|++|+| +|+||++|++|||+
T Consensus 183 ~~~~~~~~~~i~~~~~~l~~AkrPvi~~G~g~~--~a~~~l~~lae-~~~pv~~t~~~kg~~~~~hp~~~G~~~~~~~~~ 259 (544)
T PRK07064 183 VAVPEPDAAAVAELAERLAAARRPLLWLGGGAR--HAGAEVKRLVD-LGFGVVTSTQGRGVVPEDHPASLGAFNNSAAVE 259 (544)
T ss_pred CCCCCCCHHHHHHHHHHHHhCCCCEEEECCChH--hHHHHHHHHHH-cCCCEEEccCccccCCCCChhhcccCCCCHHHH
Confidence 7899999999999986 67889999999 99999999999998
Q ss_pred -cccCCcEEEEEcCccCCcccccccccCCCCEEEEcCCccccccCCChh-----h---HHHHHHH----------hhhh-
Q 038651 128 -IVEFADAYIFVESIFNDYSSVGYSLLLNKKAILMQPDRIVVANGLLLP-----N---RNTSAYE----------SYHR- 187 (324)
Q Consensus 128 -~l~~aDlvl~lG~~~~~~~t~~~~~~~~~~iI~id~d~~~i~~~~~~~-----d---~l~~~~~----------~~~~- 187 (324)
++++|||||+||++++++.++.|....+.++||||.|+.++++..... | +|+++.+ .|..
T Consensus 260 ~~~~~aDlvl~iG~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~~ 339 (544)
T PRK07064 260 ALYKTCDLLLVVGSRLRGNETLKYSLALPRPLIRVDADAAADGRGYPNDLFVHGDAARVLARLADRLEGRLSVDPAFAAD 339 (544)
T ss_pred HHHHhCCEEEEecCCCCcccccccccCCCCceEEEeCCHHHhCCcCCCCceEecCHHHHHHHHHHhhhhccccchHHHHH
Confidence 467999999999999988877665434444999999999887211110 2 2332210 1110
Q ss_pred ------ccC--------C-------------CC---------C-C------CC-CCCCC-------CE-----------E
Q 038651 188 ------IYV--------P-------------HG---------I-P------LK-SNAHE-------PL-----------M 205 (324)
Q Consensus 188 ------~~~--------~-------------~~---------~-~------~~-~~~~~-------~l-----------~ 205 (324)
.+. + .. . . .. ..+.. .| +
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ii~~d~~~~~~~~~~~~~~~~~p~~~~~~~~g~mG~~lpaAiGa~l 419 (544)
T PRK07064 340 LRAAREAAVADLRKGLGPYAKLVDALRAALPRDGNWVRDVTISNSTWGNRLLPIFEPRANVHALGGGIGQGLAMAIGAAL 419 (544)
T ss_pred HHHHHHhhhhhcccccCcHHHHHHHHHHhCCCCCEEEeCCccchHHHHHHhcCccCCCceeccCCCccccccchhhhhhh
Confidence 000 0 00 0 0 00 00000 01 4
Q ss_pred ecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhhC------CCCCCCCCCCHHHHHHHHHH--
Q 038651 206 LSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIHD------GPYNVIENWNYTGLVEAFQN-- 277 (324)
Q Consensus 206 ~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~------~~~~~l~~~df~~lA~a~G~-- 277 (324)
..|+..|++.+||++|.|.. |||+|++||++|+++||+||++|++++..|. ..++++.+|||+++|++||+
T Consensus 420 A~p~~~vv~i~GDGsf~m~~-~eL~Ta~~~~lpv~ivV~NN~~yg~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~ 498 (544)
T PRK07064 420 AGPGRKTVGLVGDGGLMLNL-GELATAVQENANMVIVLMNDGGYGVIRNIQDAQYGGRRYYVELHTPDFALLAASLGLPH 498 (544)
T ss_pred hCcCCcEEEEEcchHhhhhH-HHHHHHHHhCCCeEEEEEeCChhHHHHHHHHHhcCCccccccCCCCCHHHHHHHCCCeE
Confidence 56788999999999999985 9999999999999999999999999986651 23567888999999999998
Q ss_pred -----------HHHHhHHhCCCCeEEEEEEecCCC
Q 038651 278 -----------AIETAAVEKKDCLCFIEAIVHKDD 301 (324)
Q Consensus 278 -----------al~~a~~~~~~~p~lIeV~id~~~ 301 (324)
+|++++ +.++|+||||.+++..
T Consensus 499 ~~v~~~~eL~~al~~a~--~~~~p~lIeV~~~~~~ 531 (544)
T PRK07064 499 WRVTSADDFEAVLREAL--AKEGPVLVEVDMLSIG 531 (544)
T ss_pred EEeCCHHHHHHHHHHHH--cCCCCEEEEEEccccc
Confidence 777774 6889999999998543
No 34
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=100.00 E-value=1.4e-54 Score=443.00 Aligned_cols=286 Identities=19% Similarity=0.202 Sum_probs=225.8
Q ss_pred CcCCCC-chHHHHhhhcC-CCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh
Q 038651 7 SSSPAD-SSSLLDHLIAE-PGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~-~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~ 83 (324)
..+||+ +++|+|+|.+. .+|+||.+|||++|+||||||+|+|| +|||++|+|||++|++|||++||.|++|||+||+
T Consensus 22 FGvpG~~~~~l~dal~~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~~~gi~~A~~d~vPvl~I~G 101 (597)
T PRK08273 22 FGYPGDGINGLLGALGRADDKPEFVQARHEEMAAFMAVAHAKFTGEVGVCLATSGPGAIHLLNGLYDAKLDHVPVVAIVG 101 (597)
T ss_pred EEeCCCchHHHHHHHHhccCCCeEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHHHHHHhcCCCEEEEec
Confidence 358999 99999999753 46999999999999999999999999 9999999999999999999999999999999942
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 102 ~~~~~~~~~~~~q~~d~~~l~~~vt~k~~~~v~~~~~~~~~l~~A~~~A~~~~gPV~i~iP~Dv~~~~~~~~~~~~~~~~ 181 (597)
T PRK08273 102 QQARAALGGHYQQEVDLQSLFKDVAGAFVQMVTVPEQLRHLVDRAVRTALAERTVTAVILPNDVQELEYEPPPHAHGTVH 181 (597)
T ss_pred CCchhhcCCCCCCccCHHHHHHHHHHHHeeEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeCcchhhCcccCccccccccc
Confidence
Q ss_pred -----------------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc-------------
Q 038651 84 -----------------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM------------- 127 (324)
Q Consensus 84 -----------------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~------------- 127 (324)
|++||||+|++|+|+. ++.+++.+|||++|+||+||++|||+
T Consensus 182 ~~~~~~~~~~~~~~~~i~~a~~~L~~AkrPvi~~G~g~~--~a~~~l~~lae~~~~PV~tt~~gkg~~~e~hp~~~G~~G 259 (597)
T PRK08273 182 SGVGYTRPRVVPYDEDLRRAAEVLNAGRKVAILVGAGAL--GATDEVIAVAERLGAGVAKALLGKAALPDDLPWVTGSIG 259 (597)
T ss_pred cccCCCCCCCCCCHHHHHHHHHHHhcCCCEEEEECcchH--hHHHHHHHHHHHhCCceeecccCcccCCCCCccceecCC
Confidence 6789999999999995 78999999999999999999999997
Q ss_pred ---------cccCCcEEEEEcCccCCcccccccccCCCC-EEEEcCCccccccCCChh-------h---HHHHHHH----
Q 038651 128 ---------IVEFADAYIFVESIFNDYSSVGYSLLLNKK-AILMQPDRIVVANGLLLP-------N---RNTSAYE---- 183 (324)
Q Consensus 128 ---------~l~~aDlvl~lG~~~~~~~t~~~~~~~~~~-iI~id~d~~~i~~~~~~~-------d---~l~~~~~---- 183 (324)
++++|||||+||+++... + +....++. +||||+|+.+++ +.++ | +|+++.+
T Consensus 260 ~~g~~~a~~~~~~aDlvl~lG~~~~~~-~--~~~~~~~~~~i~Id~d~~~~~--~~~~~~~~i~~D~~~~l~~L~~~l~~ 334 (597)
T PRK08273 260 LLGTKPSYELMRECDTLLMVGSSFPYS-E--FLPKEGQARGVQIDIDGRMLG--LRYPMEVNLVGDAAETLRALLPLLER 334 (597)
T ss_pred CCccHHHHHHHHhCCEEEEeCCCCCHH-h--cCCCCCCCeEEEEeCCHHHcC--CCCCCCceEecCHHHHHHHHHHhhhc
Confidence 678999999999998422 1 11112233 999999999987 2222 3 2332211
Q ss_pred ----hhh-------hccC-----C---CCCCC----------CCCC-------------------------CCC------
Q 038651 184 ----SYH-------RIYV-----P---HGIPL----------KSNA-------------------------HEP------ 203 (324)
Q Consensus 184 ----~~~-------~~~~-----~---~~~~~----------~~~~-------------------------~~~------ 203 (324)
.|. +.+. . ...+. ...+ ...
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~s~~~ 414 (597)
T PRK08273 335 KKDRSWRERIEKWVARWWETLEARAMVPADPVNPQRVFWELSPRLPDNAILTADSGSCANWYARDLRMRRGMMASLSGTL 414 (597)
T ss_pred cCCHHHHHHHHHHHHHhHhhhhhhhcCCCCCcCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHhCCCCCCCeEEecCcc
Confidence 121 0000 0 00000 0000 000
Q ss_pred --E-----------EecCCCeEEEecCchHHhhhHHHHHHHHHHh-----CCCeEEEEEeCCchhhhhhhh----CCC--
Q 038651 204 --L-----------MLSGNTAVIAETGDSWFNCQKDVDVSTMLRC-----EQKNIIFLINNGNYTIEVEIH----DGP-- 259 (324)
Q Consensus 204 --l-----------~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~-----~lpviivV~NN~~yg~~~~~~----~~~-- 259 (324)
+ +..|+..|++.+||++|.|+.+|||+|++|| ++|+++||+||++|++++..| +.+
T Consensus 415 g~mG~glpaaiGa~la~p~~~Vv~i~GDG~f~m~~~~EL~Ta~r~~~~~~~lpviivV~NN~~~~~i~~~q~~~~~~~~~ 494 (597)
T PRK08273 415 ATMGPAVPYAIAAKFAHPDRPVIALVGDGAMQMNGMAELITVAKYWRQWSDPRLIVLVLNNRDLNQVTWEQRVMEGDPKF 494 (597)
T ss_pred ccccchHHHHHHHHHhCCCCcEEEEEcchhHhccchHHHHHHHHHhhcccCCCEEEEEEeCCcchHHHHHHHHhcCCCcc
Confidence 0 4567889999999999998734999999999 999999999999999987654 221
Q ss_pred --CCCCCCCCHHHHHHHHHH-------------HHHHhHHhCCCCeEEEEEEecCCC
Q 038651 260 --YNVIENWNYTGLVEAFQN-------------AIETAAVEKKDCLCFIEAIVHKDD 301 (324)
Q Consensus 260 --~~~l~~~df~~lA~a~G~-------------al~~a~~~~~~~p~lIeV~id~~~ 301 (324)
+.++++|||+++|++||+ +|++|+ +.++|+||||++|+++
T Consensus 495 ~~~~~~~~~d~~~lA~a~G~~~~~v~~~~eL~~al~~a~--~~~~p~lIeV~~~~~~ 549 (597)
T PRK08273 495 EASQDLPDVPYARFAELLGLKGIRVDDPEQLGAAWDEAL--AADRPVVLEVKTDPNV 549 (597)
T ss_pred cccccCCCCCHHHHHHHCCCEEEEECCHHHHHHHHHHHH--hCCCCEEEEEEeCCCC
Confidence 245678999999999998 777774 6899999999999876
No 35
>PRK12474 hypothetical protein; Provisional
Probab=100.00 E-value=3.3e-54 Score=433.63 Aligned_cols=282 Identities=15% Similarity=0.108 Sum_probs=215.3
Q ss_pred CcCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh-
Q 038651 7 SSSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA- 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~- 83 (324)
..+||+ +++|+|++.++++|+||.+|||++|+||||||||+|| +|||++|+|||++|++|||++||.|++|||+|++
T Consensus 24 FGvpG~~~~~l~dal~~~~~i~~i~~rhE~~A~~mAdgYaR~tg~~gv~~~t~GpG~~N~~~gl~~A~~d~~Pvl~i~G~ 103 (518)
T PRK12474 24 FANPGTSEMHFVAALDRVPRMRPVLCLFEGVVTGAADGYGRIAGKPAVTLLHLGPGLANGLANLHNARRAASPIVNIVGD 103 (518)
T ss_pred EECCCcchHHHHHHhhccCCceEEEecchHHHHHHHHHHHHHhCCCEEEEEccchhHhHhHHHHHHHhhcCCCEEEEecc
Confidence 358999 9999999976568999999999999999999999999 9999999999999999999999999999999942
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 104 ~~~~~~~~~~~q~~d~~~~~~~vtk~~~~v~~~~~~~~~i~rA~~~A~~~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~ 183 (518)
T PRK12474 104 HAVEHLQYDAPLTSDIDGFARPVSRWVHRSASAGAVDSDVARAVQAAQSAPGGIATLIMPADVAWNEAAYAAQPLRGIGP 183 (518)
T ss_pred CchhhcCCCCccccCHHHhhhcccceeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEechhhhcccccCCcCCCCCCCC
Confidence
Q ss_pred --------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEec------CCCCCc---------------c
Q 038651 84 --------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVM------PSAKGM---------------I 128 (324)
Q Consensus 84 --------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt------~~gkg~---------------~ 128 (324)
|++||||+|++|+|+.++++.+++++|+|++|+||++| ++|||+ +
T Consensus 184 ~~~~~~~i~~~~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~g~PV~~t~~~~~~~~gkg~~~~~~~~~~~~~~~~~ 263 (518)
T PRK12474 184 APVAAETVERIAALLRNGKKSALLLRGSALRGAPLEAAGRIQAKTGVRLYCDTFAPRIERGAGRVPIERIPYFHEQITAF 263 (518)
T ss_pred CCCCHHHHHHHHHHHHcCCCcEEEECCccchhhHHHHHHHHHHHHCCCEEEecCcccccCCCCCCCCcccccchHHHHHH
Confidence 88999999999999999999999999999999999975 458987 5
Q ss_pred ccCCcEEEEEcCccCC--ccc-ccccc-cCCCC-EEEEcCCccccccCCChhhHHHHHHHh-------------------
Q 038651 129 VEFADAYIFVESIFND--YSS-VGYSL-LLNKK-AILMQPDRIVVANGLLLPNRNTSAYES------------------- 184 (324)
Q Consensus 129 l~~aDlvl~lG~~~~~--~~t-~~~~~-~~~~~-iI~id~d~~~i~~~~~~~d~l~~~~~~------------------- 184 (324)
+++|||||+||+++.. +.+ ..+.. ..+.. +++++.....+ .++|+++.+.
T Consensus 264 ~~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~------~~~l~~L~~~l~~~~~~~~~~~~~~~~~~ 337 (518)
T PRK12474 264 LKDVEQLVLVGAKPPVSFFAYPGKPSWGAPPGCEIVYLAQPDEDL------AQALQDLADAVDAPAEPAARTPLALPALP 337 (518)
T ss_pred HhhCCEEEEECCCCCccccccCCCccccCCCCCEEEEECCCCcCH------HHHHHHHHHhccccccccccccccccCCC
Confidence 8999999999999632 111 11221 22334 88877532211 1122211110
Q ss_pred --------------------------------hhhc-cC-CCCCCCCCCCCCCE-----------EecCCCeEEEecCch
Q 038651 185 --------------------------------YHRI-YV-PHGIPLKSNAHEPL-----------MLSGNTAVIAETGDS 219 (324)
Q Consensus 185 --------------------------------~~~~-~~-~~~~~~~~~~~~~l-----------~~~~~~~vv~d~G~~ 219 (324)
|... +. ......-......+ +..|+..||+.+||+
T Consensus 338 ~~~i~~~~~~~~l~~~l~~d~iv~~d~g~~~~~~~~~~~~~~p~~~~~~~~gsmG~glpaAiGa~lA~p~r~vv~i~GDG 417 (518)
T PRK12474 338 KGALNSLGVAQLIAHRTPDQAIYADEALTSGLFFDMSYDRARPHTHLPLTGGSIGQGLPLAAGAAVAAPDRKVVCPQGDG 417 (518)
T ss_pred CCCcCHHHHHHHHHHHCCCCeEEEECCCcCHHHHHHhhcccCCCCEEccCCCccCccHHHHHHHHHHCCCCcEEEEEcCc
Confidence 0000 00 00000000000111 557889999999999
Q ss_pred HHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhh-C------C----CCCCC--CCCCHHHHHHHHHH---------
Q 038651 220 WFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIH-D------G----PYNVI--ENWNYTGLVEAFQN--------- 277 (324)
Q Consensus 220 ~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~-~------~----~~~~l--~~~df~~lA~a~G~--------- 277 (324)
+|.|+. |||+|++||++|+++||+||++|++++..+ . . .++++ ++|||+++|++||+
T Consensus 418 ~f~m~~-qEL~Ta~r~~lpv~iiV~NN~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~rv~~~~ 496 (518)
T PRK12474 418 GAAYTM-QALWTMARENLDVTVVIFANRSYAILNGELQRVGAQGAGRNALSMLDLHNPELNWMKIAEGLGVEASRATTAE 496 (518)
T ss_pred hhcchH-HHHHHHHHHCCCcEEEEEcCCcchHHHHHHHhhcCCCCCccccccccCCCCCCCHHHHHHHCCCeEEEeCCHH
Confidence 999985 999999999999999999999999988543 1 1 23444 35899999999998
Q ss_pred ----HHHHhHHhCCCCeEEEEEEe
Q 038651 278 ----AIETAAVEKKDCLCFIEAIV 297 (324)
Q Consensus 278 ----al~~a~~~~~~~p~lIeV~i 297 (324)
+|++++ ++++|+||||++
T Consensus 497 eL~~al~~a~--~~~~p~liev~~ 518 (518)
T PRK12474 497 EFSAQYAAAM--AQRGPRLIEAMI 518 (518)
T ss_pred HHHHHHHHHH--cCCCCEEEEEEC
Confidence 777775 789999999975
No 36
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=100.00 E-value=2.6e-54 Score=437.89 Aligned_cols=294 Identities=20% Similarity=0.252 Sum_probs=234.8
Q ss_pred CcCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh-
Q 038651 7 SSSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA- 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~- 83 (324)
..+||+ +++|+|+|.++++|++|.+|||++|+||||||+|+|| +|||++|+|||++|+++||++||.|++|||+|++
T Consensus 20 FgvpG~~~~~l~~~l~~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~l~~i~~A~~~~~Pvl~i~g~ 99 (558)
T TIGR00118 20 FGYPGGAILPIYDALYNDSGIEHILVRHEQGAAHAADGYARASGKVGVVLVTSGPGATNLVTGIATAYMDSIPMVVFTGQ 99 (558)
T ss_pred EeCCCcchHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEecC
Confidence 368999 9999999986568999999999999999999999999 9999999999999999999999999999999942
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 100 ~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~v~~A~~~A~~~~~GPV~i~iP~dv~~~~~~~~~~~~~~~~~ 179 (558)
T TIGR00118 100 VPTSLIGSDAFQEADILGITMPITKHSFQVKSAEDIPRIIKEAFHIATTGRPGPVLVDLPKDVTTAEIEYPYPEKVNLPG 179 (558)
T ss_pred CCccccCCCCCcccChhhhhcCccceeEEeCCHHHHHHHHHHHHHHHhcCCCCeEEEEcChhhhhhhccccccccccccC
Confidence
Q ss_pred ------------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc------------------
Q 038651 84 ------------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM------------------ 127 (324)
Q Consensus 84 ------------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~------------------ 127 (324)
|++||||+|++|+|+.++++.++|++|+|++|+||+||++|||+
T Consensus 180 ~~~~~~~~~~~i~~~~~~L~~AkrPvi~~G~g~~~~~a~~~l~~lae~l~~pv~tt~~~kg~~~e~hp~~~G~~g~~~~~ 259 (558)
T TIGR00118 180 YRPTVKGHPLQIKKAAELINLAKKPVILVGGGVIIAGASEELKELAERIQIPVTTTLMGLGSFPEDHPLSLGMLGMHGTK 259 (558)
T ss_pred CCCCCCCCHHHHHHHHHHHHhCCCcEEEECCCccccchHHHHHHHHHHhCCCEEEccccCCCCCCCCccccCCCCCCCCH
Confidence 78999999999999999999999999999999999999999998
Q ss_pred ----cccCCcEEEEEcCccCCcccccccccCCCC-EEEEcCCccccccCCChh------h---HHHHHHH----------
Q 038651 128 ----IVEFADAYIFVESIFNDYSSVGYSLLLNKK-AILMQPDRIVVANGLLLP------N---RNTSAYE---------- 183 (324)
Q Consensus 128 ----~l~~aDlvl~lG~~~~~~~t~~~~~~~~~~-iI~id~d~~~i~~~~~~~------d---~l~~~~~---------- 183 (324)
++++|||||+||++++++.++.|..+.++. +||||.|+.+++ +...+ | +|+++.+
T Consensus 260 ~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~-~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~ 338 (558)
T TIGR00118 260 TANLAVHECDLIIAVGARFDDRVTGNLAKFAPNAKIIHIDIDPAEIG-KNVRVDIPIVGDARNVLEELLKKLFELKERKE 338 (558)
T ss_pred HHHHHHHhCCEEEEECCCCCccccCchhhcCCCCcEEEEeCCHHHhC-CcCCCCeEEecCHHHHHHHHHHhhhhccccCc
Confidence 567999999999999988877665444444 999999999887 32221 2 2332211
Q ss_pred -hhhh-------ccC----CCCCCC----------C-------------------------CCCCCC--------E----
Q 038651 184 -SYHR-------IYV----PHGIPL----------K-------------------------SNAHEP--------L---- 204 (324)
Q Consensus 184 -~~~~-------~~~----~~~~~~----------~-------------------------~~~~~~--------l---- 204 (324)
.|.+ .+. ...... . ..+... +
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~p~~~~~~~~~g~mG~~l 418 (558)
T TIGR00118 339 SAWLEQINKWKKEYPLKMDYTEEGIKPQQVIEELSRVTKDEAIVTTDVGQHQMWAAQFYPFRKPRRFITSGGLGTMGFGL 418 (558)
T ss_pred HHHHHHHHHHHHhChhhccCCCCCcCHHHHHHHHHhhCCCCeEEEeCCcHHHHHHHHhcccCCCCeEEeCCccccccchh
Confidence 1210 000 000000 0 000000 0
Q ss_pred -------EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhh----CCCC--CCC-CCCCHHH
Q 038651 205 -------MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIH----DGPY--NVI-ENWNYTG 270 (324)
Q Consensus 205 -------~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~----~~~~--~~l-~~~df~~ 270 (324)
...|+..|++-+||++|.|.. |||+|++||++|+++||+||++|++++..| ...+ ..+ ++|||.+
T Consensus 419 ~aaiGa~la~~~~~vv~~~GDG~f~~~~-~eL~ta~~~~l~~~~vv~NN~~~~~~~~~q~~~~~~~~~~~~~~~~~d~~~ 497 (558)
T TIGR00118 419 PAAIGAKVAKPESTVICITGDGSFQMNL-QELSTAVQYDIPVKILILNNRYLGMVRQWQELFYEERYSHTHMGSLPDFVK 497 (558)
T ss_pred hHHHhhhhhCCCCcEEEEEcchHHhccH-HHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcCCceeeccCCCCCCHHH
Confidence 445788889999999999864 999999999999999999999999987654 2222 233 3699999
Q ss_pred HHHHHHH-------------HHHHhHHhCCCCeEEEEEEecCCCCcH
Q 038651 271 LVEAFQN-------------AIETAAVEKKDCLCFIEAIVHKDDTGK 304 (324)
Q Consensus 271 lA~a~G~-------------al~~a~~~~~~~p~lIeV~id~~~~~~ 304 (324)
+|++||+ +|++++ +.++|+||||++++++.++
T Consensus 498 ~a~a~G~~~~~v~~~~~l~~al~~a~--~~~~p~liev~~~~~~~~~ 542 (558)
T TIGR00118 498 LAEAYGIKGIRIEKPEELDEKLKEAL--SSNEPVLLDVVVDKPENVL 542 (558)
T ss_pred HHHHCCCeEEEECCHHHHHHHHHHHH--hCCCCEEEEEEeCCccccc
Confidence 9999998 666664 6799999999999876543
No 37
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=100.00 E-value=1.5e-54 Score=438.91 Aligned_cols=285 Identities=18% Similarity=0.183 Sum_probs=226.5
Q ss_pred CcCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh-
Q 038651 7 SSSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA- 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~- 83 (324)
..+||+ +++|+|++.++ +|++|.+|||++|+||||||||+|| +|||++|+|||++|+++||++||.|++|||+||+
T Consensus 21 Fg~pG~~~~~l~dal~~~-~i~~v~~~hE~~A~~mAdgyar~tgkpgv~~~t~GPG~~N~l~~l~~A~~~~~Pvl~i~G~ 99 (549)
T PRK06457 21 YGIPGDSIDPLVDAIRKS-KVKYVQVRHEEGAALAASVEAKITGKPSACMGTSGPGSIHLLNGLYDAKMDHAPVIALTGQ 99 (549)
T ss_pred EEcCCcchHHHHHHHHhc-CCeEEEeCcHHHHHHHHHHHHHHhCCCeEEEeCCCCchhhhHHHHHHHHhcCCCEEEEecC
Confidence 368999 99999999764 6999999999999999999999999 9999999999999999999999999999999952
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 100 ~~~~~~~~~~~q~~d~~~l~~~vtk~~~~v~~~~~~~~~i~~A~~~a~~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~ 179 (549)
T PRK06457 100 VESDMIGHDYFQEVNLTKLFDDVAVFNQILINPENAEYIIRRAIREAISKRGVAHINLPVDILRKSSEYKGSKNTEVGKV 179 (549)
T ss_pred CCccccCCCcccccchhhhhccceeEEEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeCHhHhhcccccccccccCCCCC
Confidence
Q ss_pred ------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc----------------------cc
Q 038651 84 ------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM----------------------IV 129 (324)
Q Consensus 84 ------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~----------------------~l 129 (324)
|++||||+|++|+|++ ++.+++++|||++|+||+||++|||+ ++
T Consensus 180 ~~~~~i~~~~~~L~~AkrPvii~G~g~~--~a~~~l~~lAe~~~~PV~tt~~gkg~~~~~hp~~~G~~g~~~~~~~~~~l 257 (549)
T PRK06457 180 KYSIDFSRAKELIKESEKPVLLIGGGTR--GLGKEINRFAEKIGAPIIYTLNGKGILPDLDPKVMGGIGLLGTKPSIEAM 257 (549)
T ss_pred CCHHHHHHHHHHHHcCCCcEEEECcchh--hHHHHHHHHHHHHCCCEEEcccccccCCCCChhhccCCCCCCCHHHHHHH
Confidence 7889999999999996 67899999999999999999999997 66
Q ss_pred cCCcEEEEEcCccCCcccccccccCCCC-EEEEcCCccccccCCChh------h---HHHHHH---------------Hh
Q 038651 130 EFADAYIFVESIFNDYSSVGYSLLLNKK-AILMQPDRIVVANGLLLP------N---RNTSAY---------------ES 184 (324)
Q Consensus 130 ~~aDlvl~lG~~~~~~~t~~~~~~~~~~-iI~id~d~~~i~~~~~~~------d---~l~~~~---------------~~ 184 (324)
++|||||++|+++++.. | ..+.. +||||.|+.+++ +.... | +++... ..
T Consensus 258 ~~aDlvl~lG~~~~~~~---~--~~~~~~ii~id~d~~~~~-~~~~~~~~i~~d~~~~l~~~~~~~~~~~~~~~~~~~~~ 331 (549)
T PRK06457 258 DKADLLIMLGTSFPYVN---F--LNKSAKVIQVDIDNSNIG-KRLDVDLSYPIPVAEFLNIDIEEKSDKFYEELKGKKED 331 (549)
T ss_pred HhCCEEEEECCCCChhh---c--CCCCCcEEEEeCCHHHhC-CCCCCCeEEecCHHHHHHHHhhcccchhHHHHHHHHHH
Confidence 79999999999985432 1 12233 999999999987 32222 2 222110 11
Q ss_pred hhhc----cCCCCCC----------------------------------CC-CCCCCCE-------------------Ee
Q 038651 185 YHRI----YVPHGIP----------------------------------LK-SNAHEPL-------------------ML 206 (324)
Q Consensus 185 ~~~~----~~~~~~~----------------------------------~~-~~~~~~l-------------------~~ 206 (324)
|... ......+ .. ..+...+ ..
T Consensus 332 ~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~iiv~d~g~~~~~~~~~~~~~~~~~~~~~~~~g~mG~glpaaiGa~la 411 (549)
T PRK06457 332 WLDSISKQENSLDKPMKPQRVAYIVSQKCKKDAVIVTDTGNVTMWTARHFRASGEQTFIFSAWLGSMGIGVPGSVGASFA 411 (549)
T ss_pred HHHHHHHhhcCCCCCcCHHHHHHHHHhhCCCCeEEEECCcHHHHHHHHhCCCCCCCeEEeCCCcchhhhhHHHHHHHHhc
Confidence 2110 0000000 00 0011101 45
Q ss_pred cC-CCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhhC-----CCCCCCCCCCHHHHHHHHHH---
Q 038651 207 SG-NTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIHD-----GPYNVIENWNYTGLVEAFQN--- 277 (324)
Q Consensus 207 ~~-~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~-----~~~~~l~~~df~~lA~a~G~--- 277 (324)
.| +..|++.+||++|.|.. |||+|++||+||+++||+||++|++++..|. ....++.+|||.++|++||+
T Consensus 412 ~p~~~~Vv~i~GDGsf~~~~-~eL~Ta~~~~lpi~ivV~NN~~~g~i~~~q~~~~~~~~~~~~~~~d~~~lA~a~G~~~~ 490 (549)
T PRK06457 412 VENKRQVISFVGDGGFTMTM-MELITAKKYDLPVKIIIYNNSKLGMIKFEQEVMGYPEWGVDLYNPDFTKIAESIGFKGF 490 (549)
T ss_pred CCCCCeEEEEEcccHHhhhH-HHHHHHHHHCCCeEEEEEECCccchHHHHHHHhcCCcccccCCCCCHHHHHHHCCCeEE
Confidence 56 88999999999999985 9999999999999999999999999976541 22367778999999999998
Q ss_pred ----------HHHHhHHhCCCCeEEEEEEecCCCCc
Q 038651 278 ----------AIETAAVEKKDCLCFIEAIVHKDDTG 303 (324)
Q Consensus 278 ----------al~~a~~~~~~~p~lIeV~id~~~~~ 303 (324)
+|++++ +.++|+||||++|+++.|
T Consensus 491 ~v~~~~el~~al~~a~--~~~~p~lIeV~i~~~~~~ 524 (549)
T PRK06457 491 RLEEPKEAEEIIEEFL--NTKGPAVLDAIVDPNERP 524 (549)
T ss_pred EeCCHHHHHHHHHHHH--hCCCCEEEEEEeCccccC
Confidence 777774 788999999999987654
No 38
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=100.00 E-value=4.1e-54 Score=437.79 Aligned_cols=295 Identities=18% Similarity=0.206 Sum_probs=233.4
Q ss_pred CcCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh-
Q 038651 7 SSSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA- 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~- 83 (324)
..+||+ +++|+|++.++++|++|.+|||++|+||||||+|+|| +|||++|+|||++|+++||++||.|++|||+||+
T Consensus 23 Fg~pG~~~~~l~~al~~~~~i~~v~~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~l~~i~~A~~~~~Pvlvi~G~ 102 (574)
T PRK06882 23 FGYPGGSVLDIYDAIHTLGGIEHVLVRHEQAAVHMADGYARSTGKVGCVLVTSGPGATNAITGIATAYTDSVPLVILSGQ 102 (574)
T ss_pred EeCCCcchHHHHHHHhhcCCCeEEEeccHHHHHHHHHHHHHhhCCCeEEEECCCccHHHHHHHHHHHhhcCCCEEEEecC
Confidence 468999 9999999976457999999999999999999999999 9999999999999999999999999999999952
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 103 ~~~~~~~~~~~q~~d~~~l~~~vtk~s~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~ 182 (574)
T PRK06882 103 VPSNLIGTDAFQECDMLGISRPVVKHSFIVKNAEDIPSTIKKAFYIASTGRPGPVVIDIPKDMVNPANKFTYEYPEEVSL 182 (574)
T ss_pred CCccccCCCcccccchhhhhhcccceEEEeCCHHHHHHHHHHHHHHHhcCCCCCEEEecCHHHhhhhcccccccCccccc
Confidence
Q ss_pred --------------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc----------------
Q 038651 84 --------------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM---------------- 127 (324)
Q Consensus 84 --------------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~---------------- 127 (324)
|.+||||+|++|+|+.++++.+++.+|+|++|+||+||++|||+
T Consensus 183 ~~~~~~~~~~~~~i~~~~~~l~~A~rPvi~~G~g~~~~~a~~~l~~lae~~~~pv~tt~~gkg~~~~~hp~~~G~~G~~~ 262 (574)
T PRK06882 183 RSYNPTVQGHKGQIKKALKALLVAKKPVLFVGGGVITAECSEQLTQFAQKLNLPVTSSLMGLGAYPSTDKQFLGMLGMHG 262 (574)
T ss_pred ccCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCccccchHHHHHHHHHHhCCCEEEcCccCcCCCCCChhhcCCCcccc
Confidence 67889999999999999999999999999999999999999997
Q ss_pred ------cccCCcEEEEEcCccCCcccccccccCCCC-EEEEcCCccccccCCChh------h---HHHHHHH--------
Q 038651 128 ------IVEFADAYIFVESIFNDYSSVGYSLLLNKK-AILMQPDRIVVANGLLLP------N---RNTSAYE-------- 183 (324)
Q Consensus 128 ------~l~~aDlvl~lG~~~~~~~t~~~~~~~~~~-iI~id~d~~~i~~~~~~~------d---~l~~~~~-------- 183 (324)
++++|||||+||++++++.++.|..+.+.. +||||.|+.+++ +.... | +|+.+.+
T Consensus 263 ~~~~~~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~I~id~d~~~~~-~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~ 341 (574)
T PRK06882 263 TYEANNAMHESDLILGIGVRFDDRTTNNLAKYCPNAKVIHIDIDPTSIS-KNVPAYIPIVGSAKNVLEEFLSLLEEENLA 341 (574)
T ss_pred cHHHHHHHHhCCEEEEECCCCCccccCchhhcCCCCeEEEEECCHHHhc-CccCCceEEecCHHHHHHHHHHHhhhhccc
Confidence 677999999999999988887665444444 999999999987 32111 2 2322211
Q ss_pred -------hh-------hhccC---CCC-CCC----------CC-------------------------CCCCCE------
Q 038651 184 -------SY-------HRIYV---PHG-IPL----------KS-------------------------NAHEPL------ 204 (324)
Q Consensus 184 -------~~-------~~~~~---~~~-~~~----------~~-------------------------~~~~~l------ 204 (324)
.| ++... +.. ... +. .+...+
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~ii~~d~g~~~~~~~~~~~~~~p~~~~~~~~~g 421 (574)
T PRK06882 342 KSQTDLTAWWQQINEWKAKKCLEFDRTSDVIKPQQVVEAIYRLTNGDAYVASDVGQHQMFAALHYPFDKPRRWINSGGAG 421 (574)
T ss_pred ccccccHHHHHHHHHHHHhChhhhccCCCCcCHHHHHHHHHhhcCCCeEEEecCchhHHHHHHhccccCCCcEEeCCCcc
Confidence 11 10000 000 000 00 000000
Q ss_pred -------------EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhh----CCCC--CCC-C
Q 038651 205 -------------MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIH----DGPY--NVI-E 264 (324)
Q Consensus 205 -------------~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~----~~~~--~~l-~ 264 (324)
+..|+..|++.+||++|.|.. |||+|++||++|+++||+||++|++++..| ...+ .++ .
T Consensus 422 ~mG~~lp~aiGa~la~p~~~vv~i~GDG~f~~~~-~eL~ta~~~~lpv~~vV~NN~~~~~i~~~q~~~~~~~~~~~~~~~ 500 (574)
T PRK06882 422 TMGFGLPAAIGVKFAHPEATVVCVTGDGSIQMNI-QELSTAKQYDIPVVIVSLNNRFLGMVKQWQDLIYSGRHSQVYMNS 500 (574)
T ss_pred cccchhHHHHHHHhhcCCCcEEEEEcchhhhccH-HHHHHHHHhCCCeEEEEEECchhHHHHHHHHHhcCCcccccCCCC
Confidence 456788899999999998874 999999999999999999999999998765 2222 222 3
Q ss_pred CCCHHHHHHHHHH-------------HHHHhHHhCCCCeEEEEEEecCCCCcH
Q 038651 265 NWNYTGLVEAFQN-------------AIETAAVEKKDCLCFIEAIVHKDDTGK 304 (324)
Q Consensus 265 ~~df~~lA~a~G~-------------al~~a~~~~~~~p~lIeV~id~~~~~~ 304 (324)
++||.++|++||+ +|++++ ...++|+||||.+|+++.++
T Consensus 501 ~~d~~~la~a~G~~~~~v~~~~eL~~al~~a~-~~~~~p~liev~i~~~~~~~ 552 (574)
T PRK06882 501 LPDFAKLAEAYGHVGIQIDTPDELEEKLTQAF-SIKDKLVFVDVNVDETEHVY 552 (574)
T ss_pred CCCHHHHHHHCCCeEEEeCCHHHHHHHHHHHH-hcCCCcEEEEEEecCccccC
Confidence 5899999999998 777774 22489999999999876443
No 39
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=100.00 E-value=4.6e-54 Score=437.43 Aligned_cols=286 Identities=16% Similarity=0.153 Sum_probs=226.8
Q ss_pred CcCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh-
Q 038651 7 SSSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA- 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~- 83 (324)
..+||+ +++|+|+|.++++|++|.+|||++|+||||||||+|| +|||++|+|||++|++|||++||.|++|||+||+
T Consensus 22 Fg~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~n~~~gi~~A~~~~~Pvl~i~G~ 101 (574)
T PRK09124 22 WGVTGDSLNGLSDSLRRMGTIEWMHTRHEEVAAFAAGAEAQLTGELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAH 101 (574)
T ss_pred EECCCCchHHHHHHHhccCCCcEEEeCcHHHHHHHHHHHHHhhCCcEEEEECCCCCHHHHHHHHHHHhhcCCCEEEEecC
Confidence 368999 9999999976568999999999999999999999999 9999999999999999999999999999999952
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 102 ~~~~~~~~~~~Q~~d~~~l~~~itk~~~~v~~~~~~~~~i~~A~~~A~~~~gPV~l~iP~Dv~~~~~~~~~~~~~~~~~~ 181 (574)
T PRK09124 102 IPSSEIGSGYFQETHPQELFRECSHYCELVSNPEQLPRVLAIAMRKAILNRGVAVVVLPGDVALKPAPERATPHWYHAPQ 181 (574)
T ss_pred CccccCCCCCccccChhhhcccceeeeEEeCCHHHHHHHHHHHHHHHhcCCCCEEEEeChhhhhCccccccccccccCCC
Confidence
Q ss_pred ----------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc--------------------
Q 038651 84 ----------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM-------------------- 127 (324)
Q Consensus 84 ----------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~-------------------- 127 (324)
|++||||+|++|+|+. ++.+++++|+|++|+||+||++|||+
T Consensus 182 ~~~~~~~~~i~~~~~~L~~AkrPvii~G~g~~--~a~~~l~~lae~l~~PV~tt~~gkg~~~~~hp~~~G~~G~~~~~~~ 259 (574)
T PRK09124 182 PVVTPAEEELRKLAALLNGSSNITLLCGSGCA--GAHDELVALAETLKAPIVHALRGKEHVEYDNPYDVGMTGLIGFSSG 259 (574)
T ss_pred CCCCCCHHHHHHHHHHHHcCCCCEEEECcChH--hHHHHHHHHHHHhCCceEEcccccccCCCCCcccccCCccCCCHHH
Confidence 8889999999999984 68899999999999999999999997
Q ss_pred --cccCCcEEEEEcCccCCcccccccccCCC-CEEEEcCCccccccCCChh------h---HHHHHHH--------hhh-
Q 038651 128 --IVEFADAYIFVESIFNDYSSVGYSLLLNK-KAILMQPDRIVVANGLLLP------N---RNTSAYE--------SYH- 186 (324)
Q Consensus 128 --~l~~aDlvl~lG~~~~~~~t~~~~~~~~~-~iI~id~d~~~i~~~~~~~------d---~l~~~~~--------~~~- 186 (324)
++++|||||+||++++... | ..+. ++||||.|+.+++ +.... | +++++.+ .|.
T Consensus 260 ~~~~~~aDlvl~lG~~~~~~~---~--~~~~~~ii~id~d~~~~~-~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~ 333 (574)
T PRK09124 260 YHAMMNCDTLLMLGTDFPYRQ---F--YPTDAKIIQIDINPGSLG-RRSPVDLGLVGDVKATLAALLPLLEEKTDRKFLD 333 (574)
T ss_pred HHHHHhCCEEEEECCCCCccc---c--cCCCCcEEEeeCCHHHhC-CCCCCCeEEEccHHHHHHHHHHhhhccCChHHHH
Confidence 5789999999999985321 1 2223 3999999999987 32222 3 2332211 111
Q ss_pred ----------hcc-C---CC-C-CCC----------CC-------------------------CCCCC--------E---
Q 038651 187 ----------RIY-V---PH-G-IPL----------KS-------------------------NAHEP--------L--- 204 (324)
Q Consensus 187 ----------~~~-~---~~-~-~~~----------~~-------------------------~~~~~--------l--- 204 (324)
... . +. . ... .. .+... +
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~~G~mG~~ 413 (574)
T PRK09124 334 KALEHYRKARKGLDDLAVPSDGGKPIHPQYLARQISEFAADDAIFTCDVGTPTVWAARYLKMNGKRRLLGSFNHGSMANA 413 (574)
T ss_pred HHHHHHHHHHHhhhhhhcccCCCCcCCHHHHHHHHHhhcCCCcEEEEcCCHHHHHHHHhcccCCCCeEEecCCcccccch
Confidence 000 0 00 0 000 00 00000 0
Q ss_pred --------EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhh--C---CCCCCCCCCCHHHH
Q 038651 205 --------MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIH--D---GPYNVIENWNYTGL 271 (324)
Q Consensus 205 --------~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~--~---~~~~~l~~~df~~l 271 (324)
+..|+..|++.+||++|.|.. |||+|++||++|+++||+||++|++++..+ . ..++++.+|||+++
T Consensus 414 lpaAiGa~la~p~r~vv~i~GDGsf~m~~-~eL~Ta~~~~lpv~ivV~NN~~~g~i~~~~~~~~~~~~~~~~~~~d~~~l 492 (574)
T PRK09124 414 MPQALGAQAAHPGRQVVALSGDGGFSMLM-GDFLSLVQLKLPVKIVVFNNSVLGFVAMEMKAGGYLTDGTDLHNPDFAAI 492 (574)
T ss_pred HHHHHHHHHhCCCCeEEEEecCcHHhccH-HHHHHHHHhCCCeEEEEEeCCccccHHHHHHhcCCccccCcCCCCCHHHH
Confidence 456788899999999999985 999999999999999999999999987544 1 13467788999999
Q ss_pred HHHHHH-------------HHHHhHHhCCCCeEEEEEEecCCCCc
Q 038651 272 VEAFQN-------------AIETAAVEKKDCLCFIEAIVHKDDTG 303 (324)
Q Consensus 272 A~a~G~-------------al~~a~~~~~~~p~lIeV~id~~~~~ 303 (324)
|++||+ +|++++ +.++|+||||.+++++.+
T Consensus 493 A~a~G~~~~~v~~~~eL~~al~~a~--~~~~p~lIev~i~~~~~~ 535 (574)
T PRK09124 493 AEACGITGIRVEKASELDGALQRAF--AHDGPALVDVVTAKQELA 535 (574)
T ss_pred HHHCCCeEEEeCCHHHHHHHHHHHH--hCCCCEEEEEEecCcccC
Confidence 999998 777774 788999999999986643
No 40
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=100.00 E-value=4.3e-54 Score=438.58 Aligned_cols=293 Identities=20% Similarity=0.263 Sum_probs=234.2
Q ss_pred CcCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh-
Q 038651 7 SSSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA- 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~- 83 (324)
..+||+ +++|+|++.+ .+|+||.||||++|+||||||+|+|| +|||++|+|||++|+++||++||.|++|||+|++
T Consensus 20 Fg~pG~~~~~l~~al~~-~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~G~ 98 (586)
T PRK06276 20 FGYPGGALLPFYDALYD-SDLIHILTRHEQAAAHAADGYARASGKVGVCVATSGPGATNLVTGIATAYADSSPVIALTGQ 98 (586)
T ss_pred EECCCcchHHHHHHHHh-CCCcEEEeccHHHHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 368999 9999999976 47999999999999999999999999 9999999999999999999999999999999942
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 99 ~~~~~~~~~~~q~~d~~~l~~~~tk~s~~v~~~~~i~~~i~~A~~~A~~~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~ 178 (586)
T PRK06276 99 VPTKLIGNDAFQEIDALGIFMPITKHNFQIKKPEEIPEIFRAAFEIAKTGRPGPVHIDLPKDVQEGELDLEKYPIPAKID 178 (586)
T ss_pred CCccccCCCCCccccHhhHHhhhcceEEecCCHHHHHHHHHHHHHHhcCCCCCcEEEEcChhHHhhhhcccccccccccc
Confidence
Q ss_pred ---------------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc---------------
Q 038651 84 ---------------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM--------------- 127 (324)
Q Consensus 84 ---------------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~--------------- 127 (324)
|++||||+|++|+|+.++++.+++++|+|++|+||+||++|||+
T Consensus 179 ~~~~~~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~~~~pv~tt~~~kg~~p~~hp~~~G~~G~~ 258 (586)
T PRK06276 179 LPGYKPTTFGHPLQIKKAAELIAEAERPVILAGGGVIISGASEELIELSELVKIPVCTTLMGKGAFPEDHPLALGMVGMH 258 (586)
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHcCCCeEEEECCCcCcccHHHHHHHHHHHHCCCEEEcCCCCccCCCCCcccccCCCCC
Confidence 67889999999999999999999999999999999999999998
Q ss_pred -------cccCCcEEEEEcCccCCcccccccccCCCC-EEEEcCCccccccCCChh------h---HHHHHHH-------
Q 038651 128 -------IVEFADAYIFVESIFNDYSSVGYSLLLNKK-AILMQPDRIVVANGLLLP------N---RNTSAYE------- 183 (324)
Q Consensus 128 -------~l~~aDlvl~lG~~~~~~~t~~~~~~~~~~-iI~id~d~~~i~~~~~~~------d---~l~~~~~------- 183 (324)
++++|||||+||++++++.++.+..+.++. +||||.|+.+++ +.... | +|+++.+
T Consensus 259 ~~~~~~~~l~~aD~vl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~-~~~~~~~~i~~D~~~~L~~L~~~l~~~~~ 337 (586)
T PRK06276 259 GTKAANYSVTESDVLIAIGCRFSDRTTGDISSFAPNAKIIHIDIDPAEIG-KNVRVDVPIVGDAKNVLRDLLAELMKKEI 337 (586)
T ss_pred CCHHHHHHHHcCCEEEEECCCCCccccCCccccCCCCeEEEEECCHHHhC-CcCCCceEEecCHHHHHHHHHHhhhhhcc
Confidence 578999999999999988776665444444 999999999887 32211 2 2332211
Q ss_pred ----hhhh-------ccCCC----CCCC----------CCCCC-----CC------------------------------
Q 038651 184 ----SYHR-------IYVPH----GIPL----------KSNAH-----EP------------------------------ 203 (324)
Q Consensus 184 ----~~~~-------~~~~~----~~~~----------~~~~~-----~~------------------------------ 203 (324)
.|.+ .+.+. .... ..-+. +.
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~~~~~~iv~~d~G~~~~~~~~~~~~~~p~~~~~~~~ 417 (586)
T PRK06276 338 KNKSEWLERVKKLKKESIPRMDFDDKPIKPQRVIKELMEVLREIDPSKNTIITTDVGQNQMWMAHFFKTSAPRSFISSGG 417 (586)
T ss_pred cchHHHHHHHHHHHHhccccccCCCCCcCHHHHHHHHHHhccccCCCCCeEEEeCCcHHHHHHHHhcccCCCCeEEcCCC
Confidence 1210 00000 0000 00000 00
Q ss_pred ---E-----------EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhh----CCCC--CCC
Q 038651 204 ---L-----------MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIH----DGPY--NVI 263 (324)
Q Consensus 204 ---l-----------~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~----~~~~--~~l 263 (324)
+ ...|+..|++.+||++|.|.. |||+|++||++|+++||+||++|++++..| ...+ .++
T Consensus 418 ~gsmG~~lpaaiGa~la~p~~~Vv~i~GDGsf~m~~-~eL~Ta~~~~lpv~~vV~NN~~~g~~~~~~~~~~~~~~~~~~~ 496 (586)
T PRK06276 418 LGTMGFGFPAAIGAKVAKPDANVIAITGDGGFLMNS-QELATIAEYDIPVVICIFDNRTLGMVYQWQNLYYGKRQSEVHL 496 (586)
T ss_pred ccccccchhHHHhhhhhcCCCcEEEEEcchHhhccH-HHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHHhCCCcccccC
Confidence 0 345777888889999998874 999999999999999999999999987554 2233 455
Q ss_pred -CCCCHHHHHHHHHH-------------HHHHhHHhCCCCeEEEEEEecCCCCcH
Q 038651 264 -ENWNYTGLVEAFQN-------------AIETAAVEKKDCLCFIEAIVHKDDTGK 304 (324)
Q Consensus 264 -~~~df~~lA~a~G~-------------al~~a~~~~~~~p~lIeV~id~~~~~~ 304 (324)
++|||.++|++||+ +|++++ +.++|+||||++|+++.++
T Consensus 497 ~~~~d~~~la~a~G~~~~~v~~~~el~~al~~a~--~~~~p~lIeV~i~~~~~~~ 549 (586)
T PRK06276 497 GETPDFVKLAESYGVKADRVEKPDEIKEALKEAI--KSGEPYLLDIIIDPAEALP 549 (586)
T ss_pred CCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHH--hCCCCEEEEEEecccccCC
Confidence 47999999999998 777774 6789999999999877543
No 41
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=100.00 E-value=4.3e-54 Score=437.63 Aligned_cols=291 Identities=18% Similarity=0.192 Sum_probs=228.3
Q ss_pred CcCCCC-chHHHHhhhcCC-CCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh
Q 038651 7 SSSPAD-SSSLLDHLIAEP-GSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~-~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~ 83 (324)
..+||+ +++|+|+|.+++ +|++|.+|||++|+||||||+|+|| +|||++|+|||++|+++||++||.|++|||+|++
T Consensus 18 FgvpG~~~~~l~dal~~~~~~i~~v~~rhE~~A~~~Adgyar~tgk~gv~~~t~GPG~~n~~~~i~~A~~~~~Pvl~I~G 97 (575)
T TIGR02720 18 YGIPGGSFNSTMDALSAERDRIHYIQVRHEEVGALAAAADAKLTGKIGVCFGSAGPGATHLLNGLYDAKEDHVPVLALVG 97 (575)
T ss_pred EECCCcchHHHHHHHHhcCCCCcEEEeccHHHHHHHHHHHHHhhCCceEEEeCCCCcHHHHHHHHHHHhhcCCCEEEEec
Confidence 368999 999999997643 5999999999999999999999999 9999999999999999999999999999999942
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 98 ~~~~~~~~~~~~q~id~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~ 177 (575)
T TIGR02720 98 QVPTTGMNMDTFQEMNENPIYADVAVYNRTAMTAESLPHVIDEAIRRAYAHNGVAVVTIPVDFGWQEIPDNDYYASSVSY 177 (575)
T ss_pred CCccccCCCCCcceechhhhhhhcceEEEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEECcchhhccccccccccccccc
Confidence
Q ss_pred -------------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc-----------------
Q 038651 84 -------------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM----------------- 127 (324)
Q Consensus 84 -------------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~----------------- 127 (324)
|++||||+|++|+|++ ++.+++.+|||++|+||+||++|||+
T Consensus 178 ~~~~~~~~~~~~v~~~~~~L~~AkrPvil~G~g~~--~a~~~l~~lae~l~~PV~tt~~gkg~~~~~hpl~~G~~g~~~~ 255 (575)
T TIGR02720 178 QTPLLPAPDVEAVTRAVQTLKAAERPVIYYGIGAR--KAGEELEALSEKLKIPLISTGLAKGIIEDRYPAYLGSAYRVAQ 255 (575)
T ss_pred cCCCCCCCCHHHHHHHHHHHHcCCCcEEEECcchh--hHHHHHHHHHHHhCCCEEEcccccccCCCCCcccccCCcCCCc
Confidence 7899999999999997 68899999999999999999999998
Q ss_pred -----cccCCcEEEEEcCccCCcccccccccCCCC-EEEEcCCccccccCCChh------hH---HHHHHH--------h
Q 038651 128 -----IVEFADAYIFVESIFNDYSSVGYSLLLNKK-AILMQPDRIVVANGLLLP------NR---NTSAYE--------S 184 (324)
Q Consensus 128 -----~l~~aDlvl~lG~~~~~~~t~~~~~~~~~~-iI~id~d~~~i~~~~~~~------d~---l~~~~~--------~ 184 (324)
++++|||||++|++++...+ .+. +.+.+ +||||+|+.+++ +.... |. |+++.+ .
T Consensus 256 ~~~~~~l~~aDlvl~vG~~~~~~~~-~~~-~~~~~~~I~id~d~~~~~-~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~ 332 (575)
T TIGR02720 256 KPANEALFQADLVLFVGNNYPFAEV-SKA-FKNTKYFIQIDIDPAKLG-KRHHTDIAVLADAKKALAAILAQVEPRESTP 332 (575)
T ss_pred HHHHHHHHhCCEEEEeCCCCCcccc-ccc-cCCCceEEEEeCCHHHhC-CCCCCCeEEecCHHHHHHHHHHhccccCChH
Confidence 57899999999999854322 222 22334 699999999987 32221 32 332211 1
Q ss_pred hhh-------cc--------CCCCCCC----------C-------------------------CCCCCCE----------
Q 038651 185 YHR-------IY--------VPHGIPL----------K-------------------------SNAHEPL---------- 204 (324)
Q Consensus 185 ~~~-------~~--------~~~~~~~----------~-------------------------~~~~~~l---------- 204 (324)
|.+ .+ ....... + ..+...+
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~ii~~D~g~~~~~~~~~~~~~~~~~~~~~~~~gsmG~ 412 (575)
T TIGR02720 333 WWQANVANVKNWRAYLASLEDKTEGPLQAYQVYRAINKIAEDDAIYSIDVGDININSNRHLKMTPKNKWITSNLFATMGV 412 (575)
T ss_pred HHHHHHHHHHHHHHHhhhhhccCCCCcCHHHHHHHHHHhCCCCcEEEeCCcHHHHHHHHhCCcCCCCeEEcCCCcchhhc
Confidence 100 00 0000000 0 0000000
Q ss_pred ---------EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhh---CCCC--CCCCCCCHHH
Q 038651 205 ---------MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIH---DGPY--NVIENWNYTG 270 (324)
Q Consensus 205 ---------~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~---~~~~--~~l~~~df~~ 270 (324)
...|+..||+.+||++|.|+. |||+|++||++|+++||+||++|++++..| ..++ .++++|||++
T Consensus 413 glpaAiGa~la~p~r~Vv~i~GDGsf~m~~-~eL~Tavr~~lpi~~VV~NN~~yg~i~~~~~~~~~~~~~~~~~~~df~~ 491 (575)
T TIGR02720 413 GVPGAIAAKLNYPDRQVFNLAGDGAFSMTM-QDLLTQVQYHLPVINIVFSNCTYGFIKDEQEDTNQPLIGVDFNDADFAK 491 (575)
T ss_pred hHHHHHHHHHhCCCCcEEEEEcccHHHhhH-HHHHHHHHhCCCeEEEEEeCCccHHHHHHHHHhCCCcccccCCCCCHHH
Confidence 456788899999999999984 999999999999999999999999987654 2333 4677899999
Q ss_pred HHHHHHH-------------HHHHhHHh-CCCCeEEEEEEecCCCCcH
Q 038651 271 LVEAFQN-------------AIETAAVE-KKDCLCFIEAIVHKDDTGK 304 (324)
Q Consensus 271 lA~a~G~-------------al~~a~~~-~~~~p~lIeV~id~~~~~~ 304 (324)
+|++||+ +|++++ . +.++|+||||++++++.++
T Consensus 492 iA~a~G~~~~~v~~~~el~~al~~a~-~~~~~~p~liev~i~~~~~~~ 538 (575)
T TIGR02720 492 IAEGVGAVGFRVNKIEQLPAVFEQAK-AIKQGKPVLIDAKITGDRPLP 538 (575)
T ss_pred HHHHCCCEEEEeCCHHHHHHHHHHHH-hhCCCCcEEEEEEeCCCCCCC
Confidence 9999998 666662 1 5789999999999988655
No 42
>PRK06154 hypothetical protein; Provisional
Probab=100.00 E-value=3.7e-54 Score=437.05 Aligned_cols=281 Identities=23% Similarity=0.272 Sum_probs=221.7
Q ss_pred chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhc--C-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh------
Q 038651 13 SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARAR--A-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA------ 83 (324)
Q Consensus 13 ~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~t--g-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~------ 83 (324)
..+|+|+|.+ .+|++|.||||++|+||||||+|+| | +|||++|+|||++|++|||++||.|++|||+|++
T Consensus 43 ~~~l~dal~~-~~i~~i~~rhE~~A~~mAdgyar~t~g~~~gv~~~t~GPG~~N~~~gla~A~~~~~Pvl~i~G~~~~~~ 121 (565)
T PRK06154 43 VNELFDAAAA-AGIRPVIARTERVAVHMADGYARATSGERVGVFAVQYGPGAENAFGGVAQAYGDSVPVLFLPTGYPRGS 121 (565)
T ss_pred CHHHHHHHHh-cCCeEEeeCcHHHHHHHHHHHHHhcCCCCCEEEEECCCccHHHHHHHHHHHhhcCCCEEEEeCCCCccc
Confidence 4689999976 5799999999999999999999998 4 8999999999999999999999999999999952
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 122 ~~~~~~~d~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~A~s~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~ 201 (565)
T PRK06154 122 TDVAPNFESLRNYRHITKWCEQVTLPDEVPELMRRAFTRLRNGRPGPVVLELPVDVLAEELDELPLDHRPSRRSRPGADP 201 (565)
T ss_pred ccCCCCcchhhhHhhcceeEEECCCHHHHHHHHHHHHHHHhcCCCceEEEecchHHhhhhcccccccccCCCCCCCCCCH
Confidence
Q ss_pred ---------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc----------------------cccCC
Q 038651 84 ---------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM----------------------IVEFA 132 (324)
Q Consensus 84 ---------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~----------------------~l~~a 132 (324)
|++||||+|++|+|++++++.+++++|||++|+||+||++|||+ ++++|
T Consensus 202 ~~i~~aa~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~l~~PV~tt~~gkg~~~~~hpl~~G~~g~~~~~~~~~~~~~a 281 (565)
T PRK06154 202 VEVVEAAALLLAAERPVIYAGQGVLYAQATPELKELAELLEIPVMTTLNGKSAFPEDHPLALGSGGRARPATVAHFLREA 281 (565)
T ss_pred HHHHHHHHHHHhCCCCEEEECCCccccChHHHHHHHHHHhCCCEEECCCcccCCCCCCccccCCCCCCCcHHHHHHHHhC
Confidence 88999999999999999999999999999999999999999997 57899
Q ss_pred cEEEEEcCccCCcccccccccCCCC-EEEEcCCccccccCCChh-------h---HHHHHHH--------------hhh-
Q 038651 133 DAYIFVESIFNDYSSVGYSLLLNKK-AILMQPDRIVVANGLLLP-------N---RNTSAYE--------------SYH- 186 (324)
Q Consensus 133 Dlvl~lG~~~~~~~t~~~~~~~~~~-iI~id~d~~~i~~~~~~~-------d---~l~~~~~--------------~~~- 186 (324)
||||+||++++++.. .+. +.++. +||||+|+.+++ +.++ | +|+++.+ .|.
T Consensus 282 DlvL~lG~~l~~~~~-~~~-~~~~~~vI~id~d~~~~~--~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~~~~~~~~ 357 (565)
T PRK06154 282 DVLFGIGCSLTRSYY-GLP-MPEGKTIIHSTLDDADLN--KDYPIDHGLVGDAALVLKQMIEELRRRVGPDRGRAQQVAA 357 (565)
T ss_pred CEEEEECCCCccccc-Ccc-CCCCCeEEEEECCHHHhc--cccCCCeeEEcCHHHHHHHHHHHhhhcccccccchHHHHH
Confidence 999999999987543 232 33334 999999999987 2222 2 2222110 111
Q ss_pred ------hccC----C----CCCCC----------C-C-------------------------CCCCC--------E----
Q 038651 187 ------RIYV----P----HGIPL----------K-S-------------------------NAHEP--------L---- 204 (324)
Q Consensus 187 ------~~~~----~----~~~~~----------~-~-------------------------~~~~~--------l---- 204 (324)
+.+. . ...+. + . .+... +
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~l~~~l~~~d~iv~~D~G~~~~~~~~~~~~~~p~~~~~~~~~gsmG~gl 437 (565)
T PRK06154 358 EIEAVRAAWLAKWMPKLTSDSTPINPYRVVWELQHAVDIKTVIITHDAGSPRDQLSPFYVASRPGSYLGWGKTTQLGYGL 437 (565)
T ss_pred HHHHHHHHhHHhhhhhccCCCCCcCHHHHHHHHHHhcCCCCEEEEECCcccHHHHHHhCCCCCCCeEEccCCCcccccHH
Confidence 0000 0 00000 0 0 00000 1
Q ss_pred -------EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhh---CCCC--CCCCCCCHHHHH
Q 038651 205 -------MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIH---DGPY--NVIENWNYTGLV 272 (324)
Q Consensus 205 -------~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~---~~~~--~~l~~~df~~lA 272 (324)
...|++.||+.+||++|.|+. |||+|++||++|+++||+||++|++++..+ ...+ .++ +|||+++|
T Consensus 438 paaiGa~la~p~r~Vv~i~GDG~f~m~~-~EL~Ta~r~~lpi~~vV~NN~~yg~~~~~~~~~~~~~~~~~~-~~df~~lA 515 (565)
T PRK06154 438 GLAMGAKLARPDALVINLWGDAAFGMTG-MDFETAVRERIPILTILLNNFSMGGYDKVMPVSTTKYRATDI-SGDYAAIA 515 (565)
T ss_pred HHHHHHHHhCCCCcEEEEEcchHHhccH-HHHHHHHHhCCCeEEEEEECCccceeehhhhhhcCcccccCC-CCCHHHHH
Confidence 456788999999999999985 999999999999999999999999887654 1222 343 58999999
Q ss_pred HHHHH-------------HHHHhHHh--CCCCeEEEEEEecCCC
Q 038651 273 EAFQN-------------AIETAAVE--KKDCLCFIEAIVHKDD 301 (324)
Q Consensus 273 ~a~G~-------------al~~a~~~--~~~~p~lIeV~id~~~ 301 (324)
++||+ +|++|+ . +.++|+||||++++++
T Consensus 516 ~a~G~~g~~V~~~~el~~al~~a~-~~~~~~~p~lIev~v~~~~ 558 (565)
T PRK06154 516 RALGGYGERVEDPEMLVPALLRAL-RKVKEGTPALLEVITSEET 558 (565)
T ss_pred HHCCCeEEEECCHHHHHHHHHHHH-hhccCCCeEEEEEEeChHH
Confidence 99998 777774 2 2688999999999864
No 43
>PRK08611 pyruvate oxidase; Provisional
Probab=100.00 E-value=5.5e-54 Score=436.89 Aligned_cols=286 Identities=19% Similarity=0.229 Sum_probs=226.1
Q ss_pred CcCCCC-chHHHHhhhc-CCCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh
Q 038651 7 SSSPAD-SSSLLDHLIA-EPGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~-~~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~ 83 (324)
..+||+ +++|+|+|.+ +++|++|.+|||++|+||||||+|+|| +|||++|+|||++|++|||++||.|++|||+||+
T Consensus 23 FgipG~~~~~l~dal~~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~l~gla~A~~~~~Pvl~ItG 102 (576)
T PRK08611 23 YGIPGDSIDAVVDALRKEQDKIKFIQVRHEEVAALAAAAYAKLTGKIGVCLSIGGPGAIHLLNGLYDAKMDHVPVLALAG 102 (576)
T ss_pred EecCCcchHHHHHHHHhcCCCCeEEEeCcHHHHHHHHHHHHHHhCCceEEEECCCCcHHHHHHHHHHHhhcCCCEEEEec
Confidence 368999 9999999975 357999999999999999999999999 9999999999999999999999999999999952
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 103 ~~~~~~~~~~~~q~~d~~~l~~~itk~~~~v~~~~~~~~~l~~A~~~A~~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~ 182 (576)
T PRK08611 103 QVTSDLLGTDFFQEVNLEKMFEDVAVYNHQIMSAENLPEIVNQAIRTAYEKKGVAVLTIPDDLPAQKIKDTTNKTVDTFR 182 (576)
T ss_pred CCcccccCCCCccccCHHHHhhcccceeEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeChhhhhcccccccccccccCC
Confidence
Q ss_pred -----------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc-------------------
Q 038651 84 -----------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM------------------- 127 (324)
Q Consensus 84 -----------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~------------------- 127 (324)
|++||||+|++|+|+. ++.+++++|+|++|+||+||++|||+
T Consensus 183 ~~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~--~a~~~l~~lae~~~~PV~tt~~gkg~~~~~hp~~~G~~g~~~~~~ 260 (576)
T PRK08611 183 PTVPSPKPKDIKKAAKLINKAKKPVILAGLGAK--HAKEELLAFAEKAKIPIIHTLPAKGIIPDDHPYSLGNLGKIGTKP 260 (576)
T ss_pred CCCCCCCHHHHHHHHHHHHcCCCcEEEECcCcc--hHHHHHHHHHHHhCCCEEEccccccccCCCCccccccCCCCCcHH
Confidence 7889999999999986 57899999999999999999999997
Q ss_pred ---cccCCcEEEEEcCccCCcccccccccCCCC-EEEEcCCccccccCCChh------h---HHHHHHH--------hhh
Q 038651 128 ---IVEFADAYIFVESIFNDYSSVGYSLLLNKK-AILMQPDRIVVANGLLLP------N---RNTSAYE--------SYH 186 (324)
Q Consensus 128 ---~l~~aDlvl~lG~~~~~~~t~~~~~~~~~~-iI~id~d~~~i~~~~~~~------d---~l~~~~~--------~~~ 186 (324)
++++|||||+||++++... | ..+.. +||||.|+.+++ +.... | +|+.+.+ .|.
T Consensus 261 a~~~l~~aDlvl~iG~~~~~~~---~--~~~~~~~i~id~d~~~i~-~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~ 334 (576)
T PRK08611 261 AYEAMQEADLLIMVGTNYPYVD---Y--LPKKAKAIQIDTDPANIG-KRYPVNVGLVGDAKKALHQLTENIKHVEDRRFL 334 (576)
T ss_pred HHHHHHhCCEEEEeCCCCCccc---c--CCCCCcEEEEeCCHHHcC-CccCCCeeEecCHHHHHHHHHHhcccccchHHH
Confidence 5789999999999984321 1 12223 999999999987 32221 2 3332211 110
Q ss_pred h-------cc----CC----CC---CC-------CC------------------------C-CCCCCE------------
Q 038651 187 R-------IY----VP----HG---IP-------LK------------------------S-NAHEPL------------ 204 (324)
Q Consensus 187 ~-------~~----~~----~~---~~-------~~------------------------~-~~~~~l------------ 204 (324)
+ .+ .. .. .+ .. . .+...+
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~gl 414 (576)
T PRK08611 335 EACQENMAKWWKWMEEDENNASTPIKPERVMAAIQKIADDDAVLSVDVGTVTVWSARYLNLGTNQKFIISSWLGTMGCGL 414 (576)
T ss_pred HHHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHhhhcCCCeEEEEcChHHHHHHHhcCCcCCCCeEEeCCCchhhhhhH
Confidence 0 00 00 00 00 00 0 000000
Q ss_pred -------EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhhC----CC-CCCCCCCCHHHHH
Q 038651 205 -------MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIHD----GP-YNVIENWNYTGLV 272 (324)
Q Consensus 205 -------~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~----~~-~~~l~~~df~~lA 272 (324)
...|+..||+.+||++|.|.. |||+|++||++|+++||+||++|++++..|. .. +.++.+|||+++|
T Consensus 415 paaiGa~la~p~~~Vv~i~GDGsf~m~~-~eL~Ta~r~~l~~iivV~NN~~~g~i~~~q~~~~~~~~~~~~~~~d~~~lA 493 (576)
T PRK08611 415 PGAIAAKIAFPDRQAIAICGDGGFSMVM-QDFVTAVKYKLPIVVVVLNNQQLAFIKYEQQAAGELEYAIDLSDMDYAKFA 493 (576)
T ss_pred HHHHHHHHhCCCCcEEEEEcccHHhhhH-HHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCcccccCCCCCHHHHH
Confidence 446788899999999999985 9999999999999999999999999876541 12 3567789999999
Q ss_pred HHHHH-------------HHHHhHHhCCCCeEEEEEEecCCCCc
Q 038651 273 EAFQN-------------AIETAAVEKKDCLCFIEAIVHKDDTG 303 (324)
Q Consensus 273 ~a~G~-------------al~~a~~~~~~~p~lIeV~id~~~~~ 303 (324)
++||+ +|++++ +.++|+||||.+|+.+.|
T Consensus 494 ~a~G~~~~~v~~~~eL~~al~~a~--~~~~p~lIeV~vd~~~~~ 535 (576)
T PRK08611 494 EACGGKGYRVEKAEELDPAFEEAL--AQDKPVIIDVYVDPNAAP 535 (576)
T ss_pred HHCCCeEEEeCCHHHHHHHHHHHH--hCCCCEEEEEEeCCcccC
Confidence 99998 777774 789999999999987744
No 44
>PRK07524 hypothetical protein; Provisional
Probab=100.00 E-value=6.4e-54 Score=433.05 Aligned_cols=286 Identities=21% Similarity=0.214 Sum_probs=226.7
Q ss_pred CcCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh-
Q 038651 7 SSSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA- 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~- 83 (324)
..+||+ +++|+|++.+ .+|++|.+|||++|+||||||||+|| +|||++|+|||++|++|||++||.|++|||+|++
T Consensus 21 Fg~pG~~~~~~~dal~~-~~i~~i~~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~n~~~gi~~A~~~~~Pvl~i~G~ 99 (535)
T PRK07524 21 FGIPGVHTVELYRGLAG-SGIRHVTPRHEQGAGFMADGYARVSGKPGVCFIITGPGMTNIATAMGQAYADSIPMLVISSV 99 (535)
T ss_pred EeCCCcchHHHHHHHhh-cCCcEEEeccHHHHHHHHHHHHHHhCCCeEEEECCCccHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 358999 9999999976 47999999999999999999999999 9999999999999999999999999999999952
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 100 ~~~~~~~~~~~~~~~~~d~~~l~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~~GPV~l~iP~Dv~~~~~~~~~~~~~~ 179 (535)
T PRK07524 100 NRRASLGKGRGKLHELPDQRAMVAGVAAFSHTLMSAEDLPEVLARAFAVFDSARPRPVHIEIPLDVLAAPADHLLPAPPT 179 (535)
T ss_pred CChhhcCCCCccccccccHHHHhhhhceeEEEeCCHHHHHHHHHHHHHHHhcCCCCcEEEEeCHhHHhcccccccCcccc
Confidence
Q ss_pred ------------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc------------------
Q 038651 84 ------------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM------------------ 127 (324)
Q Consensus 84 ------------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~------------------ 127 (324)
|++||||+|++|+|++ ++.+++.+|||++++||+||++|||+
T Consensus 180 ~~~~~~~~~~~i~~~~~~L~~AkrPvil~G~g~~--~a~~~l~~lae~l~~pV~tt~~~kg~~p~~hp~~~G~~~~~~~~ 257 (535)
T PRK07524 180 RPARPGPAPAALAQAAERLAAARRPLILAGGGAL--AAAAALRALAERLDAPVALTINAKGLLPAGHPLLLGASQSLPAV 257 (535)
T ss_pred cCCCCCCCHHHHHHHHHHHHhCCCcEEEECCChH--HHHHHHHHHHHHHCCCEEEcccccccCCCCChhhccCCCCCHHH
Confidence 8899999999999996 68899999999999999999999998
Q ss_pred --cccCCcEEEEEcCccCCccccc-c-cccCCCC-EEEEcCCccccccCCChh------h---HHHHHHH---------h
Q 038651 128 --IVEFADAYIFVESIFNDYSSVG-Y-SLLLNKK-AILMQPDRIVVANGLLLP------N---RNTSAYE---------S 184 (324)
Q Consensus 128 --~l~~aDlvl~lG~~~~~~~t~~-~-~~~~~~~-iI~id~d~~~i~~~~~~~------d---~l~~~~~---------~ 184 (324)
++++|||||++|++++++.+.. | ..+.++. +||||.|+.+++ +.... | +|+++.+ .
T Consensus 258 ~~~~~~aDlvl~vG~~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~-~~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~ 336 (535)
T PRK07524 258 RALIAEADVVLAVGTELGETDYDVYFDGGFPLPGELIRIDIDPDQLA-RNYPPALALVGDARAALEALLARLPGQAAAAD 336 (535)
T ss_pred HHHHHhCCEEEEeCCCcCccccccccccccCCCCCEEEEECCHHHhC-CCcCCCceEecCHHHHHHHHHHhccccCCchh
Confidence 5789999999999997665422 1 1222333 999999999987 22111 2 2332211 1
Q ss_pred hh--------hcc----CCCCCC-------------C------------------C-CCCC---------CCE-------
Q 038651 185 YH--------RIY----VPHGIP-------------L------------------K-SNAH---------EPL------- 204 (324)
Q Consensus 185 ~~--------~~~----~~~~~~-------------~------------------~-~~~~---------~~l------- 204 (324)
|. ... .+.... . . ..+. ..+
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~i~~d~g~~~~~~~~~~~~~~p~~~~~~~~~~g~mG~~lp~a 416 (535)
T PRK07524 337 WGAARVAALRQALRAEWDPLTAAQVALLDTILAALPDAIFVGDSTQPVYAGNLYFDADAPRRWFNASTGYGTLGYGLPAA 416 (535)
T ss_pred hHHHHHHHHHHhchhhccccccCHHHHHHHHHHhCCCCEEEeCCcHHHHHHHHhcccCCCCceEeCCCCcccccchHHHH
Confidence 10 000 000000 0 0 0000 001
Q ss_pred ----EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhh---C--CCCCCCCCCCHHHHHHHH
Q 038651 205 ----MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIH---D--GPYNVIENWNYTGLVEAF 275 (324)
Q Consensus 205 ----~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~---~--~~~~~l~~~df~~lA~a~ 275 (324)
+..|+..|++.+||++|.|. .|||+|++||++|+++||+||++|++++..| . ..+.++++|||.++|++|
T Consensus 417 iGa~lA~p~~~vv~i~GDG~f~~~-~~el~ta~~~~lpi~~vV~NN~~~g~i~~~~~~~~~~~~~~~~~~~d~~~~A~a~ 495 (535)
T PRK07524 417 IGAALGAPERPVVCLVGDGGLQFT-LPELASAVEADLPLIVLLWNNDGYGEIRRYMVARDIEPVGVDPYTPDFIALARAF 495 (535)
T ss_pred HHHHHhCCCCcEEEEEcchHHhhh-HHHHHHHHHhCCCeEEEEEECCchHHHHHHHHHhcCCccccCCCCCCHHHHHHHC
Confidence 44678899999999999887 4999999999999999999999999987654 1 123667789999999999
Q ss_pred HH-------------HHHHhHHhCCCCeEEEEEEecC
Q 038651 276 QN-------------AIETAAVEKKDCLCFIEAIVHK 299 (324)
Q Consensus 276 G~-------------al~~a~~~~~~~p~lIeV~id~ 299 (324)
|+ +|++++ +.++|+||||++++
T Consensus 496 G~~~~~v~~~~el~~al~~a~--~~~~p~liev~~~~ 530 (535)
T PRK07524 496 GCAAERVADLEQLQAALRAAF--ARPGPTLIEVDQAC 530 (535)
T ss_pred CCcEEEeCCHHHHHHHHHHHH--hCCCCEEEEEECCc
Confidence 98 777774 78999999999986
No 45
>PRK07586 hypothetical protein; Validated
Probab=100.00 E-value=1.8e-53 Score=427.80 Aligned_cols=282 Identities=17% Similarity=0.105 Sum_probs=212.9
Q ss_pred CcCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh-
Q 038651 7 SSSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA- 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~- 83 (324)
..+||+ +++|+|++.++++|+||.+|||++|+||||||||+|| +|||++|+|||++|+++||++||.|++|||+|++
T Consensus 20 FG~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~i~G~ 99 (514)
T PRK07586 20 FANPGTSEMHFVAALDRVPGMRCVLGLFEGVATGAADGYARMAGKPAATLLHLGPGLANGLANLHNARRARTPIVNIVGD 99 (514)
T ss_pred EECCCCchHHHHHHHhccCCCeEEEeccHHHHHHHHHHHHHHHCCCEEEEecccHHHHHHHHHHHHHHhcCCCEEEEecC
Confidence 358999 9999999976568999999999999999999999999 9999999999999999999999999999999952
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 100 ~~~~~~~~~~~q~~d~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~~~ 179 (514)
T PRK07586 100 HATYHRKYDAPLTSDIEALARPVSGWVRRSESAADVAADAAAAVAAARGAPGQVATLILPADVAWSEGGPPAPPPPAPAP 179 (514)
T ss_pred CchhccCCCcccccchhhhhccccceeeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEeccchhccccccccccCCCCCC
Confidence
Q ss_pred --------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecC------CCCCc---------------c
Q 038651 84 --------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMP------SAKGM---------------I 128 (324)
Q Consensus 84 --------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~------~gkg~---------------~ 128 (324)
|++||||+|++|+|++++++.+++++|||++|+||+||. +|||+ +
T Consensus 180 ~~~~~~~v~~~~~~L~~A~rPvi~~G~g~~~~~a~~~l~~lae~l~~pV~t~~~~~~~~~gkg~~~~~~~~~~~~~~~~~ 259 (514)
T PRK07586 180 AAVDPAAVEAAAAALRSGEPTVLLLGGRALRERGLAAAARIAAATGARLLAETFPARMERGAGRPAVERLPYFAEQALAQ 259 (514)
T ss_pred CCCCHHHHHHHHHHHHhcCCCEEEeCCcccchhHHHHHHHHHHHHCCCEEecccccccccCCCCCCcccccchHHHHHHH
Confidence 789999999999999999999999999999999999864 58886 5
Q ss_pred ccCCcEEEEEcCccCCc---ccccccccCC-CC-EEEEcCCccccccCCChhhHHHHHHHhhh------------hc---
Q 038651 129 VEFADAYIFVESIFNDY---SSVGYSLLLN-KK-AILMQPDRIVVANGLLLPNRNTSAYESYH------------RI--- 188 (324)
Q Consensus 129 l~~aDlvl~lG~~~~~~---~t~~~~~~~~-~~-iI~id~d~~~i~~~~~~~d~l~~~~~~~~------------~~--- 188 (324)
+++|||||+||+++... .+..+....+ .. +++++....+. .++++++.+..+ ..
T Consensus 260 ~~~aDlvl~vG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~------~~~l~~L~~~l~~~~~~~~~~~~~~~~~~ 333 (514)
T PRK07586 260 LAGVRHLVLVGAKAPVAFFAYPGKPSRLVPEGCEVHTLAGPGEDA------AAALEALADALGAKPAAPPLAAPARPPLP 333 (514)
T ss_pred HhcCCEEEEECCCCcccccccCCCccccCCCCceEEEECCCcccH------HHHHHHHHHhhcccccchhhhhccccCCC
Confidence 78999999999996211 0111111122 22 55554321111 112222111000 00
Q ss_pred ---------------cCCCC--------CC-------C-CCCCC-------CCE-----------EecCCCeEEEecCch
Q 038651 189 ---------------YVPHG--------IP-------L-KSNAH-------EPL-----------MLSGNTAVIAETGDS 219 (324)
Q Consensus 189 ---------------~~~~~--------~~-------~-~~~~~-------~~l-----------~~~~~~~vv~d~G~~ 219 (324)
..+.. .. . ...+. ..| +..|+..|++.+||+
T Consensus 334 ~~~i~~~~~~~~l~~~l~~~~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lpaaiGa~lA~p~r~Vv~i~GDG 413 (514)
T PRK07586 334 TGALTPEAIAQVIAALLPENAIVVDESITSGRGFFPATAGAAPHDWLTLTGGAIGQGLPLATGAAVACPDRKVLALQGDG 413 (514)
T ss_pred CCCcCHHHHHHHHHHhCCCCeEEEeCCCcCHHHHHHhccccCCCCEEccCCcccccHHHHHHHHHHhCCCCeEEEEEech
Confidence 00000 00 0 00000 111 556889999999999
Q ss_pred HHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhhC-----------CCCCCC--CCCCHHHHHHHHHH---------
Q 038651 220 WFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIHD-----------GPYNVI--ENWNYTGLVEAFQN--------- 277 (324)
Q Consensus 220 ~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~-----------~~~~~l--~~~df~~lA~a~G~--------- 277 (324)
+|.|.. |||+|++||++|+++||+||++|+++|..|. ..|.++ ++|||.++|++||+
T Consensus 414 sf~m~~-~EL~Ta~~~~lpv~ivV~NN~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~V~~~~ 492 (514)
T PRK07586 414 SAMYTI-QALWTQARENLDVTTVIFANRAYAILRGELARVGAGNPGPRALDMLDLDDPDLDWVALAEGMGVPARRVTTAE 492 (514)
T ss_pred HHHhHH-HHHHHHHHcCCCCEEEEEeCchhHHHHHHHHHhcCCCCCccccccccCCCCCCCHHHHHHHCCCcEEEeCCHH
Confidence 999985 9999999999999999999999999986541 113444 46899999999998
Q ss_pred ----HHHHhHHhCCCCeEEEEEEe
Q 038651 278 ----AIETAAVEKKDCLCFIEAIV 297 (324)
Q Consensus 278 ----al~~a~~~~~~~p~lIeV~i 297 (324)
+|++++ ++++|+||||++
T Consensus 493 el~~al~~a~--~~~~p~liev~~ 514 (514)
T PRK07586 493 EFADALAAAL--AEPGPHLIEAVV 514 (514)
T ss_pred HHHHHHHHHH--cCCCCEEEEEEC
Confidence 777775 789999999975
No 46
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=100.00 E-value=1.4e-53 Score=433.46 Aligned_cols=293 Identities=23% Similarity=0.276 Sum_probs=228.8
Q ss_pred CcCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh-
Q 038651 7 SSSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA- 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~- 83 (324)
..+||+ +++++|++.+ ++|++|.+|||++|+||||||+|+|| +|||++|+|||++|++|||++||.|++|||+|++
T Consensus 29 FGvpG~~~~~l~~~~~~-~~i~~i~~rhE~~A~~mAdgyar~tg~~gv~~~t~GPG~~N~l~gl~~A~~~~~Pvl~I~G~ 107 (569)
T PRK09259 29 YGVVGIPITDLARLAQA-EGIRYIGFRHEQSAGNAAAAAGFLTQKPGVCLTVSAPGFLNGLTALANATTNCFPMIMISGS 107 (569)
T ss_pred EeCCCcchHHHHHHHhh-CCCCEEeeCCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHhcCCCEEEEEcc
Confidence 358999 9999999975 58999999999999999999999998 9999999999999999999999999999999942
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 108 ~~~~~~~~~~~~~q~~d~~~~~~~~tk~s~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~Dv~~~~~~~~~~~~~~~ 187 (569)
T PRK09259 108 SEREIVDLQQGDYEELDQLNAAKPFCKAAFRVNRAEDIGIGVARAIRTAVSGRPGGVYLDLPAKVLAQTMDADEALTSLV 187 (569)
T ss_pred CCcccccccCCCccccchhhhhhhheeeeEEcCCHHHHHHHHHHHHHHhhhCCCCcEEEEeCHHHhhCcccccccccccc
Confidence
Q ss_pred ----------------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc--------------
Q 038651 84 ----------------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM-------------- 127 (324)
Q Consensus 84 ----------------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~-------------- 127 (324)
|++||||+|++|+|++++++.+++++|||++|+||+||++|||+
T Consensus 188 ~~~~~~~~~~~~~~~l~~~~~~L~~AkrPvIi~G~g~~~~~a~~~l~~lae~l~iPV~tt~~gkg~~~e~hpl~~G~~~~ 267 (569)
T PRK09259 188 KVVDPAPAQLPAPEAVDRALDLLKKAKRPLIILGKGAAYAQADEQIREFVEKTGIPFLPMSMAKGLLPDTHPQSAAAARS 267 (569)
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEECcCccccChHHHHHHHHHHHCCCEEecccccccCCCCChhhhhHHHH
Confidence 78999999999999999999999999999999999999999999
Q ss_pred -cccCCcEEEEEcCccCCcccccc-cccCCCC-EEEEcCCccccccCCChh-------h---HHHHHHH-----------
Q 038651 128 -IVEFADAYIFVESIFNDYSSVGY-SLLLNKK-AILMQPDRIVVANGLLLP-------N---RNTSAYE----------- 183 (324)
Q Consensus 128 -~l~~aDlvl~lG~~~~~~~t~~~-~~~~~~~-iI~id~d~~~i~~~~~~~-------d---~l~~~~~----------- 183 (324)
++++|||||+||++++++.+..+ ..+.++. +||||.|+.++++ .++ | +|+++.+
T Consensus 268 ~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~ii~Id~d~~~~~~--~~~~~~~i~~D~~~~L~~L~~~l~~~~~~~~~ 345 (569)
T PRK09259 268 LALANADVVLLVGARLNWLLSHGKGKTWGADKKFIQIDIEPQEIDS--NRPIAAPVVGDIGSVMQALLAGLKQNTFKAPA 345 (569)
T ss_pred HHHhcCCEEEEeCCCCchhcccCchhccCCCCcEEEecCChHHhcC--CccCceeEecCHHHHHHHHHHHhhhccccchH
Confidence 58999999999999988766544 2233344 9999999998872 221 2 3332211
Q ss_pred hhh-------hccC----C----CCCCC-------------C------------------------CCCCCCE-------
Q 038651 184 SYH-------RIYV----P----HGIPL-------------K------------------------SNAHEPL------- 204 (324)
Q Consensus 184 ~~~-------~~~~----~----~~~~~-------------~------------------------~~~~~~l------- 204 (324)
.|. +.+. . ...+. . ..|...+
T Consensus 346 ~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~d~iv~~~~~~~~~~~~~~~~~~~p~~~~~~~~~gs 425 (569)
T PRK09259 346 EWLDALAERKEKNAAKMAEKLSTDTQPMNFYNALGAIRDVLKENPDIYLVNEGANTLDLARNIIDMYKPRHRLDCGTWGV 425 (569)
T ss_pred HHHHHHHHHHHhChhhhhhhhcCCCCCcCHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHhcccCCCCceEeCCCCcc
Confidence 121 0000 0 00000 0 0000000
Q ss_pred -----------EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchh--hhhhhhC-CCC--CCC-CCCC
Q 038651 205 -----------MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYT--IEVEIHD-GPY--NVI-ENWN 267 (324)
Q Consensus 205 -----------~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg--~~~~~~~-~~~--~~l-~~~d 267 (324)
.+.++..|++.+||++|.|+. |||+|++||++|+++|||||++|. ..+..+. ..+ .++ ++||
T Consensus 426 mG~glpaaiGa~la~~~~vv~i~GDG~f~m~~-~EL~Ta~r~~lpi~~vV~NN~~~~~~~~~~~~~~~~~~~~~~~~~~d 504 (569)
T PRK09259 426 MGIGMGYAIAAAVETGKPVVAIEGDSAFGFSG-MEVETICRYNLPVTVVIFNNGGIYRGDDVNLSGAGDPSPTVLVHHAR 504 (569)
T ss_pred ccccHHHHHHHHhcCCCcEEEEecCccccccH-HHHHHHHHcCCCEEEEEEeChhHHHHHHHHhhcCCCccccccCCCCC
Confidence 233578899999999999985 999999999999999999999872 2222111 122 333 6899
Q ss_pred HHHHHHHHHH-------------HHHHhHHhCCCCeEEEEEEecCCCCcHH
Q 038651 268 YTGLVEAFQN-------------AIETAAVEKKDCLCFIEAIVHKDDTGKE 305 (324)
Q Consensus 268 f~~lA~a~G~-------------al~~a~~~~~~~p~lIeV~id~~~~~~~ 305 (324)
|+++|++||+ +|++|+ +.++|+||||++|+++.++.
T Consensus 505 ~~~lA~a~G~~~~~v~~~~el~~al~~a~--~~~~p~lIev~id~~~~~~~ 553 (569)
T PRK09259 505 YDKMMEAFGGVGYNVTTPDELRHALTEAI--ASGKPTLINVVIDPAAGTES 553 (569)
T ss_pred HHHHHHHCCCeEEEECCHHHHHHHHHHHH--hCCCCEEEEEEECCCCCCCc
Confidence 9999999998 777775 68999999999999876543
No 47
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=100.00 E-value=1.1e-53 Score=435.77 Aligned_cols=297 Identities=17% Similarity=0.173 Sum_probs=231.5
Q ss_pred CcCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh-
Q 038651 7 SSSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA- 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~- 83 (324)
..+||+ +++|+|++.+ .+|++|.||||++|+||||||+|+|| +|||++|+|||++|+++||++||.|++|||+|++
T Consensus 25 FGvpG~~~~~l~dal~~-~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~~~t~GPG~~n~~~gi~~A~~~~~Pvl~I~g~ 103 (588)
T PRK07525 25 FGIIGSAFMDASDLFPP-AGIRFIDVAHEQNAGHMADGYTRVTGRMGMVIGQNGPGITNFVTAVATAYWAHTPVVLVTPQ 103 (588)
T ss_pred EEeCCCchHHHHHHHhc-cCCCEEEecCHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHhhcCCCEEEEeCC
Confidence 368999 9999999975 57999999999999999999999999 9999999999999999999999999999999952
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 104 ~~~~~~~~~~~q~~d~~~l~~~~tk~~~~i~~~~~~~~~i~rA~~~A~~~~GPV~i~iP~Dv~~~~~~~~~~~~~~~~~~ 183 (588)
T PRK07525 104 AGTKTIGQGGFQEAEQMPMFEDMTKYQEEVRDPSRMAEVLNRVFDKAKRESGPAQINIPRDYFYGVIDVEIPQPVRLERG 183 (588)
T ss_pred CCcccCCCCCCcccchhhhhhhheeEEEECCCHHHHHHHHHHHHHHHhcCCCCEEEEcChhHhhhhcccccCccccCCCC
Confidence
Q ss_pred -------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc----------------------c
Q 038651 84 -------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM----------------------I 128 (324)
Q Consensus 84 -------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~----------------------~ 128 (324)
|++||||+|++|+|++++++.++|++|||++|+||+||++|||+ +
T Consensus 184 ~~~~~~i~~a~~~L~~A~rPvil~G~g~~~~~a~~~l~~lae~~~~pv~tT~~gkg~~p~~hpl~~G~~g~~g~~~~~~~ 263 (588)
T PRK07525 184 AGGEQSLAEAAELLSEAKFPVILSGAGVVLSDAIEECKALAERLDAPVACGYLHNDAFPGSHPLWVGPLGYNGSKAAMEL 263 (588)
T ss_pred CCCHHHHHHHHHHHHhCCCCEEEECCCccccChHHHHHHHHHHhCCCeEEcccccccCCCCCccccccCcccCcHHHHHH
Confidence 88999999999999999999999999999999999999999998 5
Q ss_pred ccCCcEEEEEcCccCCcccccc---cccCCCC-EEEEcCCccccccCCChh------h---HHHHHHH------------
Q 038651 129 VEFADAYIFVESIFNDYSSVGY---SLLLNKK-AILMQPDRIVVANGLLLP------N---RNTSAYE------------ 183 (324)
Q Consensus 129 l~~aDlvl~lG~~~~~~~t~~~---~~~~~~~-iI~id~d~~~i~~~~~~~------d---~l~~~~~------------ 183 (324)
+++|||||+||++++++.+..+ ..+.+.. +||||.|+.+++ +.... | +|+++.+
T Consensus 264 ~~~aDlvl~lG~~l~~~~~~~~~~~~~~~~~~~iI~Id~d~~~~~-~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~ 342 (588)
T PRK07525 264 IAKADVVLALGTRLNPFGTLPQYGIDYWPKDAKIIQVDINPDRIG-LTKKVSVGICGDAKAVARELLARLAERLAGDAGR 342 (588)
T ss_pred HHhCCEEEEECCCCchhhcccccccccCCCCCeEEEEECCHHHhC-CCCCCCceEecCHHHHHHHHHHhhhhhccccccc
Confidence 7899999999999988766422 2223334 999999999887 32211 2 2222110
Q ss_pred ------------hhhh---cc--CCC--------------CCCC----------CCCCCCC-------------------
Q 038651 184 ------------SYHR---IY--VPH--------------GIPL----------KSNAHEP------------------- 203 (324)
Q Consensus 184 ------------~~~~---~~--~~~--------------~~~~----------~~~~~~~------------------- 203 (324)
.|.. .+ ... .... ..-+++.
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~d~ivv~d~G~~~~~~~~~~~~ 422 (588)
T PRK07525 343 EERKALIAAEKSAWEQELSSWDHEDDDPGTDWNEEARARKPDYMHPRQALREIQKALPEDAIVSTDIGNNCSIANSYLRF 422 (588)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHhccccccccccccccccCCCCcCHHHHHHHHHHhCCCCcEEEECCcccHHHHHHhccc
Confidence 1110 00 000 0000 0000000
Q ss_pred --------------E-----------EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhhC-
Q 038651 204 --------------L-----------MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIHD- 257 (324)
Q Consensus 204 --------------l-----------~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~- 257 (324)
+ ...|+..||+.+||++|.|+ .|||+|++||++|+++||+||++|++++..|.
T Consensus 423 ~~p~~~~~~~~~g~mG~glp~aiGa~la~p~r~vv~i~GDG~f~~~-~~el~Ta~~~~lpv~ivV~NN~~y~~~~~~~~~ 501 (588)
T PRK07525 423 EKGRKYLAPGSFGNCGYAFPAIIGAKIACPDRPVVGFAGDGAWGIS-MNEVMTAVRHNWPVTAVVFRNYQWGAEKKNQVD 501 (588)
T ss_pred CCCCeEEccccccccccHHHHHHHHHHhCCCCcEEEEEcCchHhcc-HHHHHHHHHhCCCeEEEEEeCchhHHHHHHHHH
Confidence 0 45678888899999999887 49999999999999999999999999986552
Q ss_pred ---CCC--CCC-CCCCHHHHHHHHHH-------------HHHHhHHhC--CCCeEEEEEEecCCCCcHHHH
Q 038651 258 ---GPY--NVI-ENWNYTGLVEAFQN-------------AIETAAVEK--KDCLCFIEAIVHKDDTGKELL 307 (324)
Q Consensus 258 ---~~~--~~l-~~~df~~lA~a~G~-------------al~~a~~~~--~~~p~lIeV~id~~~~~~~~~ 307 (324)
..+ .++ ++|||.++|++||+ +|++++ .. .++|+||||+++++..+|.-.
T Consensus 502 ~~~~~~~~~~~~~~~d~~~lA~a~G~~~~~v~~~~el~~al~~a~-~~~~~~~p~lIev~~~~~~~~~~~~ 571 (588)
T PRK07525 502 FYNNRFVGTELDNNVSYAGIAEAMGAEGVVVDTQEELGPALKRAI-DAQNEGKTTVIEIMCNQELGEPFRR 571 (588)
T ss_pred HhCCCcccccCCCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHH-hcCCCCCcEEEEEEeccccCCchHh
Confidence 222 345 45899999999998 666664 21 369999999999876544443
No 48
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=100.00 E-value=7.3e-53 Score=428.74 Aligned_cols=284 Identities=15% Similarity=0.145 Sum_probs=225.4
Q ss_pred CcCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh-
Q 038651 7 SSSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA- 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~- 83 (324)
..+||+ +++|+|+|.++++|++|.||||++|+||||||+|+|| +|||++|+|||++|+++||++||.|++|||+||+
T Consensus 22 Fg~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~mAdgyar~tgk~~v~~v~~GpG~~N~~~gl~~A~~~~~Pvl~I~G~ 101 (578)
T PRK06546 22 YGIVGDSLNPIVDAVRRTGGIEWVHVRHEEAAAFAAAAEAQLTGKLAVCAGSCGPGNLHLINGLYDAHRSGAPVLAIASH 101 (578)
T ss_pred EECCCCchHHHHHHHhccCCCeEEEeCcHHHHHHHHHhHHHhhCCceEEEECCCCcHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 368999 9999999987658999999999999999999999999 9999999999999999999999999999999952
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 102 ~~~~~~~~~~~Qe~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~lP~Dv~~~~~~~~~~~~~~~~~~ 181 (578)
T PRK06546 102 IPSAQIGSGFFQETHPDRLFVECSGYCEMVSSAEQAPRVLHSAIQHAVAGGGVSVVTLPGDIADEPAPEGFAPSVISPRR 181 (578)
T ss_pred CCccccCCCCccccChhhhcccceeeEeEeCCHHHHHHHHHHHHHHHhcCCCCEEEEcChhhhhccccccccccccccCC
Confidence
Q ss_pred ----------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc--------------------
Q 038651 84 ----------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM-------------------- 127 (324)
Q Consensus 84 ----------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~-------------------- 127 (324)
|++||||+|++|+|++ ++.+++++|+|++|+||++|++|||+
T Consensus 182 ~~~~~~~~~i~~a~~~L~~A~rPvii~G~g~~--~a~~~l~~lae~~g~Pv~~t~~gkg~~~~~hp~~~G~~G~~~~~~~ 259 (578)
T PRK06546 182 PTVVPDPAEVRALADAINEAKKVTLFAGAGVR--GAHAEVLALAEKIKAPVGHSLRGKEWIQYDNPFDVGMSGLLGYGAA 259 (578)
T ss_pred CCCCCCHHHHHHHHHHHHcCCCcEEEECcchH--HHHHHHHHHHHHhCcceEECcccccCCCCCCccccCCCCCCCCHHH
Confidence 8899999999999996 68899999999999999999999997
Q ss_pred --cccCCcEEEEEcCccCCcccccccccCCCCEEEEcCCccccccCCChh------h---HHHHHHH--------hhh--
Q 038651 128 --IVEFADAYIFVESIFNDYSSVGYSLLLNKKAILMQPDRIVVANGLLLP------N---RNTSAYE--------SYH-- 186 (324)
Q Consensus 128 --~l~~aDlvl~lG~~~~~~~t~~~~~~~~~~iI~id~d~~~i~~~~~~~------d---~l~~~~~--------~~~-- 186 (324)
++++|||||+||++++.. .| ..+.++||||.|+.+++ ++... | +|+++.+ .|.
T Consensus 260 ~~~l~~aDlvl~lG~~~~~~---~~--~~~~~~I~vd~d~~~~~-~~~~~~~~i~~D~~~~l~~L~~~L~~~~~~~~~~~ 333 (578)
T PRK06546 260 HEAMHEADLLILLGTDFPYD---QF--LPDVRTAQVDIDPEHLG-RRTRVDLAVHGDVAETIRALLPLVKEKTDRRFLDR 333 (578)
T ss_pred HHHHHhCCEEEEEcCCCChh---hc--CCCCcEEEEeCCHHHhC-CCCCCCeEEEcCHHHHHHHHHHhhcccCChHHHHH
Confidence 578999999999998521 12 12234999999999998 32211 2 2322110 110
Q ss_pred -----hc--------cCC---CCCCC----------C-------------------------CCCCC--------CE---
Q 038651 187 -----RI--------YVP---HGIPL----------K-------------------------SNAHE--------PL--- 204 (324)
Q Consensus 187 -----~~--------~~~---~~~~~----------~-------------------------~~~~~--------~l--- 204 (324)
+. +.. ...+. . ..+.. .+
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~s~~~gsmG~~ 413 (578)
T PRK06546 334 MLKKHARKLEKVVGAYTRKVEKHTPIHPEYVASILDELAADDAVFTVDTGMCNVWAARYITPNGRRRVIGSFRHGSMANA 413 (578)
T ss_pred HHHHHHHHHhhhhhhhccccCCCCCcCHHHHHHHHHHhccCCcEEEECCcHHHHHHHHhcCCCCCceEEccCCcccccch
Confidence 00 000 00000 0 00000 01
Q ss_pred --------EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhh---C--CCCCCCCCCCHHHH
Q 038651 205 --------MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIH---D--GPYNVIENWNYTGL 271 (324)
Q Consensus 205 --------~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~---~--~~~~~l~~~df~~l 271 (324)
...|+..|++.+||++|.+. .|||+||+||++|+++||+||++|++++..| . ..+++++++||.++
T Consensus 414 ~paAiGa~la~p~~~vv~i~GDGsf~~~-~~el~Ta~~~~lpv~~vV~NN~~~g~i~~~q~~~~~~~~~~~~~~~df~~l 492 (578)
T PRK06546 414 LPHAIGAQLADPGRQVISMSGDGGLSML-LGELLTVKLYDLPVKVVVFNNSTLGMVKLEMLVDGLPDFGTDHPPVDYAAI 492 (578)
T ss_pred hHHHHHHHHhCCCCcEEEEEcCchHhhh-HHHHHHHHHhCCCeEEEEEECCccccHHHHHHhcCCCcccccCCCCCHHHH
Confidence 45678889999999999986 4999999999999999999999999987544 1 12356778999999
Q ss_pred HHHHHH-------------HHHHhHHhCCCCeEEEEEEecCCC
Q 038651 272 VEAFQN-------------AIETAAVEKKDCLCFIEAIVHKDD 301 (324)
Q Consensus 272 A~a~G~-------------al~~a~~~~~~~p~lIeV~id~~~ 301 (324)
|++||+ +|++++ +.++|+||||.+++++
T Consensus 493 A~a~G~~~~~v~~~~el~~al~~a~--~~~gp~lIev~~~~~~ 533 (578)
T PRK06546 493 AAALGIHAVRVEDPKDVRGALREAF--AHPGPALVDVVTDPNA 533 (578)
T ss_pred HHHCCCeeEEeCCHHHHHHHHHHHH--hCCCCEEEEEEeCCCc
Confidence 999998 777774 6899999999999865
No 49
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=100.00 E-value=1.1e-53 Score=401.52 Aligned_cols=293 Identities=19% Similarity=0.209 Sum_probs=236.8
Q ss_pred CcCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh-
Q 038651 7 SSSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA- 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~- 83 (324)
..+||+ +++++||+.+++.++||+.||||+|+|||+||+|.+| +|||++|+|||+||.+|++|+|+.|++|++++|+
T Consensus 110 FgYPGGAilpv~dAi~rS~~f~fvLPrHEQgaghaAegYaR~sgKPGvvlvTSGPGATNvvtp~ADAlaDg~PlVvftGQ 189 (675)
T KOG4166|consen 110 FGYPGGAILPVHDAITRSSSFRFVLPRHEQGAGHAAEGYARSSGKPGVVLVTSGPGATNVVTPLADALADGVPLVVFTGQ 189 (675)
T ss_pred eecCCcceeehHhhhhcCccccccccccccccchhhhhhhhhcCCCcEEEEecCCCcccccchhhHHhhcCCcEEEEecc
Confidence 468999 9999999999889999999999999999999999999 9999999999999999999999999999999952
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 190 VptsaIGtDAFQEadiVgisRScTKwNvmVkdVedlPrrI~EAFeiATSGRPGPVLVDlPKDvta~~l~~pip~~~~lPs 269 (675)
T KOG4166|consen 190 VPTSAIGTDAFQEADIVGISRSCTKWNVMVKDVEDLPRRIEEAFEIATSGRPGPVLVDLPKDVTAQLLIPPIPQAMRLPS 269 (675)
T ss_pred cchhhcccchhccCCeeeeeeccceeheeeecHHHhhHHHHHHhhhhccCCCCCeEeeCcHHHHHHHhcCCchhhhcCCc
Confidence
Q ss_pred -------------------------hhcCCCcEEEECCCCCc-cchHHHHHHHHHHhCCcEEecCCCCCc----------
Q 038651 84 -------------------------LLKAVKPAMIGGPKLSV-SKATIAFVELADACGYAFAVMPSAKGM---------- 127 (324)
Q Consensus 84 -------------------------L~~AkrPvIl~G~g~~~-~~a~~~l~~lae~l~~Pv~tt~~gkg~---------- 127 (324)
|+.||+|||++|+|+.. ++.-.+|.+|.|+++|||.||++|.|.
T Consensus 270 n~~m~~~~~~~~~~v~~~i~~~a~Li~laKKPVlyvG~G~Ln~~d~p~lL~~fser~qIPVtttL~GLGs~d~~d~lSLh 349 (675)
T KOG4166|consen 270 NAYMSRMPKPPEDFVMSHIEQIARLISLAKKPVLYVGGGCLNSSDGPRLLGRFSERTQIPVTTTLMGLGSYDCDDELSLH 349 (675)
T ss_pred hhhHhhCCCCchhhHHHHHHHHHHHHHhccCceEEeCcccccCCcchHHHHHHHHhhcCcceehhhcccCcCCCCchhhh
Confidence 78899999999999976 445669999999999999999999988
Q ss_pred ------------cccCCcEEEEEcCccCCcccccccccCC--------C-C-EEEEcCCccccccCCChh------hH--
Q 038651 128 ------------IVEFADAYIFVESIFNDYSSVGYSLLLN--------K-K-AILMQPDRIVVANGLLLP------NR-- 177 (324)
Q Consensus 128 ------------~l~~aDlvl~lG~~~~~~~t~~~~~~~~--------~-~-iI~id~d~~~i~~~~~~~------d~-- 177 (324)
++++|||||++|.||+|+.|+..+.+.+ . . |||+|+++.+|| +...+ |+
T Consensus 350 MLGMHG~~yAN~Avq~aDLilA~GvRFDDRVTGn~s~FAp~Ar~aaae~rggIiHfdispknIg-Kvvqp~~aveGDv~~ 428 (675)
T KOG4166|consen 350 MLGMHGTVYANYAVQHADLILAFGVRFDDRVTGNLSAFAPRARRAAAEGRGGIIHFDISPKNIG-KVVQPHVAVEGDVKL 428 (675)
T ss_pred hhcccccceehhhhhccceeEEecceeccccccchhhhChhhhhhhhcccCceEEEecCHHHhC-cccCcceeeeccHHH
Confidence 8899999999999999999997665432 1 2 999999999998 43332 32
Q ss_pred -HHH-----------H-------HHhhhhccC-------C-CCCC----------C------------------------
Q 038651 178 -NTS-----------A-------YESYHRIYV-------P-HGIP----------L------------------------ 196 (324)
Q Consensus 178 -l~~-----------~-------~~~~~~~~~-------~-~~~~----------~------------------------ 196 (324)
|.. + +..|++.++ + +..+ .
T Consensus 429 ~L~~m~s~~kn~~~~~r~dW~~qin~wK~~fP~sf~~~tpGe~ikPQ~vIk~Ldk~t~d~~~kviitTGVGqHQMWAAqf 508 (675)
T KOG4166|consen 429 ALQGMNSVLKNRAEELRLDWRNQINVWKQKFPLSFKEETPGEAIKPQYVIKVLDKLTDDTGRKVIITTGVGQHQMWAAQF 508 (675)
T ss_pred HHHHHHhHhhcccchhhhhHHHHHHHHHHhCCeeeeccCCccccChHHHHHHHHHhccCcCceEEEeccccHHHHHHHHH
Confidence 110 0 012332110 0 0000 0
Q ss_pred --CCCCCCCE-------------------EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhh
Q 038651 197 --KSNAHEPL-------------------MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEI 255 (324)
Q Consensus 197 --~~~~~~~l-------------------~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~ 255 (324)
..+|...| .+.|+++|+-.-||++|.|.. |||+|+.+.++||+|+++||...||+-++
T Consensus 509 y~w~kP~~~~tSGGLGtMGfGLPAAIGAsVA~P~~iViDIDGDaSF~Mt~-~ELat~rq~~~PVKiLiLNNeeqGMVtQW 587 (675)
T KOG4166|consen 509 YNWKKPRQWLTSGGLGTMGFGLPAAIGASVANPDAIVIDIDGDASFIMTV-QELATIRQENLPVKILILNNEEQGMVTQW 587 (675)
T ss_pred hcccCccceeecCCccccccCcchhhcccccCcccEEEeccCCceeeeeh-HhhhhhhhcCCceEEEEecchhhhhHHHH
Confidence 00111111 678999999888999999985 99999999999999999999999998776
Q ss_pred h----CCCCC--CCCCCCHHHHHHHHHH-------------HHHHhHHhCCCCeEEEEEEecCCCCc
Q 038651 256 H----DGPYN--VIENWNYTGLVEAFQN-------------AIETAAVEKKDCLCFIEAIVHKDDTG 303 (324)
Q Consensus 256 ~----~~~~~--~l~~~df~~lA~a~G~-------------al~~a~~~~~~~p~lIeV~id~~~~~ 303 (324)
| +.+|. .-.+|||.++|+|||+ .+++. +..+||+|+||.++..+.-
T Consensus 588 q~lFYe~rysHThQ~nPnf~klA~AmGikalRV~K~edL~~k~kef--lsTkGPvLleV~v~~kehV 652 (675)
T KOG4166|consen 588 QDLFYEARYSHTHQENPNFLKLAAAMGIKALRVTKKEDLREKIKEF--LSTKGPVLLEVIVPHKEHV 652 (675)
T ss_pred HHHHHHhhhccccccCccHHHHHHhcCCchheeehHHHHHHHHHHH--hCCCCCeEEEEEccCccce
Confidence 5 44453 2357999999999998 44443 4889999999999987643
No 50
>PRK08266 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-52 Score=424.62 Aligned_cols=288 Identities=22% Similarity=0.210 Sum_probs=229.2
Q ss_pred CcCCCC-chHHHHhhhcC-CCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh
Q 038651 7 SSSPAD-SSSLLDHLIAE-PGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~-~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~ 83 (324)
..+||+ +++|+|+|.++ ++|++|.+|||++|+||||||+|+|| +|||++|+|||++|+++||++||.|++|||+||+
T Consensus 23 Fg~pG~~~~~l~~al~~~~~~i~~v~~~hE~~A~~~A~gyar~tg~~~v~~~t~GpG~~N~~~gi~~A~~~~~Pvl~i~g 102 (542)
T PRK08266 23 FGLPGAQLYWLFDALYKAGDRIRVIHTRHEQAAGYMAFGYARSTGRPGVCSVVPGPGVLNAGAALLTAYGCNSPVLCLTG 102 (542)
T ss_pred EECCCcchHHHHHHHHhcCCCCeEEeeccHHHHHHHHHHHHHHhCCCeEEEECCCCcHHHHHHHHHHHHhhCCCEEEEec
Confidence 368999 99999999764 57999999999999999999999999 9999999999999999999999999999999952
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 103 ~~~~~~~~~~~~~~~~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~dv~~~~~~~~~~~~~ 182 (542)
T PRK08266 103 QIPSALIGKGRGHLHEMPDQLATLRSFTKWAERIEHPSEAPALVAEAFQQMLSGRPRPVALEMPWDVFGQRAPVAAAPPL 182 (542)
T ss_pred CCChhhccCCCCcceecccHhhHHhhhcceEEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEeCHhHhhCcccccccccc
Confidence
Q ss_pred -------------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc----------------c
Q 038651 84 -------------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM----------------I 128 (324)
Q Consensus 84 -------------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~----------------~ 128 (324)
|++||||+|++|+|+ .++.+++.+|+|++|+||+||++|||+ +
T Consensus 183 ~~~~~~~~~~~~i~~~~~~L~~AkrPvIv~G~g~--~~a~~~l~~lae~~g~pv~tt~~~kg~~~~~hp~~~g~~~~~~~ 260 (542)
T PRK08266 183 RPAPPPAPDPDAIAAAAALIAAAKNPMIFVGGGA--AGAGEEIRELAEMLQAPVVAFRSGRGIVSDRHPLGLNFAAAYEL 260 (542)
T ss_pred cCCCCCCCCHHHHHHHHHHHHhCCCCEEEECCCh--hhHHHHHHHHHHHHCCCEEEeccccccCCCCCccccCCHHHHHH
Confidence 788999999999996 378999999999999999999999997 5
Q ss_pred ccCCcEEEEEcCccCCcccccccccCCCC-EEEEcCCccccccCCChh------h---HHHHHHH----------hhh--
Q 038651 129 VEFADAYIFVESIFNDYSSVGYSLLLNKK-AILMQPDRIVVANGLLLP------N---RNTSAYE----------SYH-- 186 (324)
Q Consensus 129 l~~aDlvl~lG~~~~~~~t~~~~~~~~~~-iI~id~d~~~i~~~~~~~------d---~l~~~~~----------~~~-- 186 (324)
+++|||||++|+++++. +..|....+.. +||||.|+.+++ + ... | +|+++.+ .|.
T Consensus 261 ~~~aDlvl~lG~~~~~~-~~~~~~~~~~~~~i~id~d~~~~~-~-~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~~~ 337 (542)
T PRK08266 261 WPQTDVVIGIGSRLELP-TFRWPWRPDGLKVIRIDIDPTEMR-R-LKPDVAIVADAKAGTAALLDALSKAGSKRPSRRAE 337 (542)
T ss_pred HHhCCEEEEeCCCcCcc-cccccccCCCCcEEEEECCHHHhC-C-cCCCceEecCHHHHHHHHHHhhhhcccCchHHHHH
Confidence 67999999999999887 44564334334 999999999887 3 222 2 2332211 110
Q ss_pred -----hccCCC---CCC--------------------------------CC-CCCCCC--------E-----------Ee
Q 038651 187 -----RIYVPH---GIP--------------------------------LK-SNAHEP--------L-----------ML 206 (324)
Q Consensus 187 -----~~~~~~---~~~--------------------------------~~-~~~~~~--------l-----------~~ 206 (324)
..+.+. ..+ .. ..+... + +.
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~lp~d~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~~GsmG~~lp~aiGa~la 417 (542)
T PRK08266 338 LRELKAAARQRIQAVQPQASYLRAIREALPDDGIFVDELSQVGFASWFAFPVYAPRTFVTCGYQGTLGYGFPTALGAKVA 417 (542)
T ss_pred HHHHHHhhhhccccCCHHHHHHHHHHHhcCCCcEEEeCCcHHHHHHHHhcccCCCCcEEeCCCCcccccHHHHHHHHHHh
Confidence 000000 000 00 001110 1 45
Q ss_pred cCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhhC----CC--CCCCCCCCHHHHHHHHHH---
Q 038651 207 SGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIHD----GP--YNVIENWNYTGLVEAFQN--- 277 (324)
Q Consensus 207 ~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~----~~--~~~l~~~df~~lA~a~G~--- 277 (324)
.|+..|++.+||++|.+.. |||+|++||++|+++||+||++|++++..|. ++ ++++.+|||.++|++||+
T Consensus 418 ~p~~~vv~v~GDG~f~~~~-~eL~ta~~~~lpv~ivv~NN~~y~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~ 496 (542)
T PRK08266 418 NPDRPVVSITGDGGFMFGV-QELATAVQHNIGVVTVVFNNNAYGNVRRDQKRRFGGRVVASDLVNPDFVKLAESFGVAAF 496 (542)
T ss_pred CCCCcEEEEEcchhhhccH-HHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCeEE
Confidence 6788899999999999984 9999999999999999999999999876542 22 356677999999999998
Q ss_pred ----------HHHHhHHhCCCCeEEEEEEecCCCC
Q 038651 278 ----------AIETAAVEKKDCLCFIEAIVHKDDT 302 (324)
Q Consensus 278 ----------al~~a~~~~~~~p~lIeV~id~~~~ 302 (324)
+|++++ +.++|+||||.+++.+.
T Consensus 497 ~v~~~~el~~al~~a~--~~~~p~liev~i~~~~~ 529 (542)
T PRK08266 497 RVDSPEELRAALEAAL--AHGGPVLIEVPVPRGSE 529 (542)
T ss_pred EeCCHHHHHHHHHHHH--hCCCcEEEEEEecCCCC
Confidence 666664 67899999999998654
No 51
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=100.00 E-value=6.1e-53 Score=428.71 Aligned_cols=288 Identities=17% Similarity=0.116 Sum_probs=224.8
Q ss_pred CcCCCC-chHHHHhhhcCC-----CCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcch
Q 038651 7 SSSPAD-SSSLLDHLIAEP-----GSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAA 79 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~-----~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl 79 (324)
..+||+ +++|+|++.+++ +|++|.||||++|+||||||+|+|| +|||++|+|||++|++|||++||.|++|||
T Consensus 26 FgvpG~~~~~l~dal~~~~~~g~~~i~~V~~rhE~~A~~~Adgyar~tgk~gv~~~t~GPG~~N~~~gla~A~~d~~Pvl 105 (569)
T PRK08327 26 FINSGTDYPPIIEAKARARAAGRPLPEFVICPHEIVAISMAHGYALVTGKPQAVMVHVDVGTANALGGVHNAARSRIPVL 105 (569)
T ss_pred EEcCCCCcHHHHHHHHhhhhcCCCCCcEEecCCHHHHHHHHHHHHHhhCCCeEEEEecCHHHHHHHHHHHHHhhcCCCEE
Confidence 368999 999999997532 3999999999999999999999999 999999999999999999999999999999
Q ss_pred hhhh----------------------------------------------------------------------------
Q 038651 80 TITA---------------------------------------------------------------------------- 83 (324)
Q Consensus 80 ~It~---------------------------------------------------------------------------- 83 (324)
+|++
T Consensus 106 ~I~G~~~~~~~~~~~~~~~~~~~~qe~~d~~~~~~~vtk~~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~i~iP~Dv~~~ 185 (569)
T PRK08327 106 VFAGRSPYTEEGELGSRNTRIHWTQEMRDQGGLVREYVKWDYEIRRGDQIGEVVARAIQIAMSEPKGPVYLTLPREVLAE 185 (569)
T ss_pred EEeccCCccccccccccccCcccchhhhhHHHHHhhhhhhhcccCCHHHHHHHHHHHHHHHhcCCCCCEEEECcHHHHhh
Confidence 9931
Q ss_pred -------------------------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc-----
Q 038651 84 -------------------------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM----- 127 (324)
Q Consensus 84 -------------------------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~----- 127 (324)
|++||||+|++|+|+.++++.+++++|||++++||+||++|||.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~AkrPvi~~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~~~~~h 265 (569)
T PRK08327 186 EVPEVKADAGRQMAPAPPAPDPEDIARAAEMLAAAERPVIITWRAGRTAEGFASLRRLAEELAIPVVEYAGEVVNYPSDH 265 (569)
T ss_pred hccccccCccccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEEecccCCcccHHHHHHHHHHhCCCEEecCCCceeCCCCC
Confidence 88999999999999999999999999999999999999999998
Q ss_pred ----------cccCCcEEEEEcCccCCcccccccccCCCC-EEEEcCCcccccc-CCChh-------h---HHHHHHH--
Q 038651 128 ----------IVEFADAYIFVESIFNDYSSVGYSLLLNKK-AILMQPDRIVVAN-GLLLP-------N---RNTSAYE-- 183 (324)
Q Consensus 128 ----------~l~~aDlvl~lG~~~~~~~t~~~~~~~~~~-iI~id~d~~~i~~-~~~~~-------d---~l~~~~~-- 183 (324)
++++|||||+||+++.+..+..+ +.++. +||||+|+.++++ .++++ | +|+++.+
T Consensus 266 p~~~G~~~~~~~~~aDlvl~lG~~l~~~~~~~~--~~~~~~vi~Id~d~~~~~~~~~~~~~~~~i~~D~~~~l~~L~~~l 343 (569)
T PRK08327 266 PLHLGPDPRADLAEADLVLVVDSDVPWIPKKIR--PDADARVIQIDVDPLKSRIPLWGFPCDLCIQADTSTALDQLEERL 343 (569)
T ss_pred ccccccccchhhhhCCEEEEeCCCCCCcccccc--CCCCCeEEEEeCChhhhcccccCcceeEEEecCHHHHHHHHHHHH
Confidence 66899999999999976544322 22334 9999999988762 12333 2 2332210
Q ss_pred ----------------hhhh---c----cCCC----C--CCC----------CC---------------------CCCCC
Q 038651 184 ----------------SYHR---I----YVPH----G--IPL----------KS---------------------NAHEP 203 (324)
Q Consensus 184 ----------------~~~~---~----~~~~----~--~~~----------~~---------------------~~~~~ 203 (324)
.|.. . +... . ... +. .+...
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~~~~~~~ 423 (569)
T PRK08327 344 KSLASAERRRARRRRAAVRELRIRQEAAKRAEIERLKDRGPITPAYLSYCLGEVADEYDAIVTEYPFVPRQARLNKPGSY 423 (569)
T ss_pred hhcccchhhhhhhhHHHHHHHHHHhhhhhhhhhhccCCCCCcCHHHHHHHHHHhcCccceEEeccHHHHHhcCccCCCCe
Confidence 1210 0 0000 0 000 00 00000
Q ss_pred --------E-----------EecCCCeEEEecCchHHhhhHHHH--HHHHHHhCCCeEEEEEeCCchhhhhhhhC-----
Q 038651 204 --------L-----------MLSGNTAVIAETGDSWFNCQKDVD--VSTMLRCEQKNIIFLINNGNYTIEVEIHD----- 257 (324)
Q Consensus 204 --------l-----------~~~~~~~vv~d~G~~~~~~~~~qE--L~Ta~r~~lpviivV~NN~~yg~~~~~~~----- 257 (324)
| ...|+..+++.+||++|.|.. || |+|++||++|+++||+||++|++++..+.
T Consensus 424 ~~~~~~gsmG~~lp~aiGa~la~p~~~vv~i~GDG~f~~~~-~e~~l~ta~~~~l~~~ivv~NN~~yg~~~~~~~~~~~~ 502 (569)
T PRK08327 424 FGDGSAGGLGWALGAALGAKLATPDRLVIATVGDGSFIFGV-PEAAHWVAERYGLPVLVVVFNNGGWLAVKEAVLEVYPE 502 (569)
T ss_pred eeCCCCCCCCcchHHHHHHhhcCCCCeEEEEecCcceeecC-cHHHHHHHHHhCCCEEEEEEeCcccccchhHHhhhCcc
Confidence 0 456889999999999998874 55 99999999999999999999999875431
Q ss_pred C------C--CCCC-CCCCHHHHHHHHHH-------------HHHHhHHhCC----CCeEEEEEEecC
Q 038651 258 G------P--YNVI-ENWNYTGLVEAFQN-------------AIETAAVEKK----DCLCFIEAIVHK 299 (324)
Q Consensus 258 ~------~--~~~l-~~~df~~lA~a~G~-------------al~~a~~~~~----~~p~lIeV~id~ 299 (324)
+ . ..++ +++||.++|++||+ +|++++ +. ++|+||||++|+
T Consensus 503 ~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~~~~el~~al~~a~--~~~~~~~gp~liev~v~~ 568 (569)
T PRK08327 503 GYAARKGTFPGTDFDPRPDFAKIAEAFGGYGERVEDPEELKGALRRAL--AAVRKGRRSAVLDVIVDR 568 (569)
T ss_pred cccccccccccccCCCCCCHHHHHHhCCCCceEeCCHHHHHHHHHHHH--HHHhcCCCcEEEEEEccC
Confidence 1 1 2344 67999999999999 666664 33 789999999986
No 52
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=100.00 E-value=1.8e-52 Score=426.06 Aligned_cols=289 Identities=20% Similarity=0.196 Sum_probs=228.8
Q ss_pred HHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh-----------
Q 038651 16 LLDHLIAEPGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA----------- 83 (324)
Q Consensus 16 l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~----------- 83 (324)
+++++.+ ++|++|.+|||++|+||||||||+|| +|||++|+|||++|++|||++||.|++|||+|++
T Consensus 41 ~~~~~~~-~~i~~v~~rhE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~~~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~ 119 (578)
T PRK06112 41 LFLAAEA-IGIRQIAYRTENAGGAMADGYARVSGKVAVVTAQNGPAATLLVAPLAEALKASVPIVALVQDVNRDQTDRNA 119 (578)
T ss_pred hHHHHhh-cCCcEEEeccHHHHHHHHHHHHHHhCCCEEEEeCCCCcHHHHHHHHHHHhhcCCCEEEEecCCccccCCCCC
Confidence 4566754 57999999999999999999999999 9999999999999999999999999999999952
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 120 ~Q~~d~~~l~~~vtk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (578)
T PRK06112 120 FQELDHIALFQSCTKWVRRVTVAERIDDYVDQAFTAATSGRPGPVVLLLPADLLTAAAAAPAAPRSNSLGHFPLDRTVPA 199 (578)
T ss_pred ccccChhhhhccccceEEEeCCHHHHHHHHHHHHHHHhhCCCCcEEEEcCHhHhhCccccccCcccccccCCCCCCCCCC
Confidence
Q ss_pred ----------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc--------------------------
Q 038651 84 ----------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM-------------------------- 127 (324)
Q Consensus 84 ----------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~-------------------------- 127 (324)
|++||||+|++|+|+.++++.+++.+|+|++|+||++|++|||+
T Consensus 200 ~~~i~~~~~~L~~AkrPvil~G~g~~~~~a~~~l~~lae~lg~pV~~t~~~kg~~p~~hp~~~G~~g~~~~~~~~~~~~~ 279 (578)
T PRK06112 200 PQRLAEAASLLAQAQRPVVVAGGGVHISGASAALAALQSLAGLPVATTNMGKGAVDETHPLSLGVVGSLMGPRSPGRHLR 279 (578)
T ss_pred HHHHHHHHHHHHcCCCcEEEECCCccccchHHHHHHHHHHhCCCEEEcccccccCCCCCccccccccccCCCccchHHHH
Confidence 67899999999999999999999999999999999999999987
Q ss_pred -cccCCcEEEEEcCccCCcccccccccCCCC-EEEEcCCccccccCCChh------h---HHHHHHH-------------
Q 038651 128 -IVEFADAYIFVESIFNDYSSVGYSLLLNKK-AILMQPDRIVVANGLLLP------N---RNTSAYE------------- 183 (324)
Q Consensus 128 -~l~~aDlvl~lG~~~~~~~t~~~~~~~~~~-iI~id~d~~~i~~~~~~~------d---~l~~~~~------------- 183 (324)
++++|||||+||++++++.++.|..+.+.. +||||+|+.+++ + .+. | +|+++.+
T Consensus 280 ~~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~-~-~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~~~~ 357 (578)
T PRK06112 280 DLVREADVVLLVGTRTNQNGTDSWSLYPEQAQYIHIDVDGEEVG-R-NYEALRLVGDARLTLAALTDALRGRDLAARAGR 357 (578)
T ss_pred HHHHhCCEEEEECCCCCccccccccccCCCCeEEEEECChHHhC-c-cccceEEEeCHHHHHHHHHHhhhhccccccccc
Confidence 245899999999999998887776544444 999999999887 2 232 2 2222210
Q ss_pred --hhh-------hccC--------CCCCC----------------------------------CCC-CCCCC--------
Q 038651 184 --SYH-------RIYV--------PHGIP----------------------------------LKS-NAHEP-------- 203 (324)
Q Consensus 184 --~~~-------~~~~--------~~~~~----------------------------------~~~-~~~~~-------- 203 (324)
.|. +.+. ..... ... .+...
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~l~~~~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~g~g 437 (578)
T PRK06112 358 RAALEPAIAAGREAHREDSAPVALSDASPIRPERIMAELQAVLTGDTIVVADASYSSIWVANFLTARRAGMRFLTPRGLA 437 (578)
T ss_pred hHHHHHHHHHHHHhhhhhhhhhhcCCCCCcCHHHHHHHHHHhCCCCCEEEEcccHHHHHHHHhcCccCCCceEECCCCcc
Confidence 010 0000 00000 000 00100
Q ss_pred -E-----------EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhhC----C--CCCCCCC
Q 038651 204 -L-----------MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIHD----G--PYNVIEN 265 (324)
Q Consensus 204 -l-----------~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~----~--~~~~l~~ 265 (324)
| ...|+..|++.+||++|.|. .|||+|++||++|+++||+||++|++++..+. . .+.++.+
T Consensus 438 smG~~l~~aiGa~la~~~~~vv~i~GDGsf~~~-~~el~ta~~~~l~~~~vv~NN~~~g~~~~~~~~~~~~~~~~~~~~~ 516 (578)
T PRK06112 438 GLGWGVPMAIGAKVARPGAPVICLVGDGGFAHV-WAELETARRMGVPVTIVVLNNGILGFQKHAETVKFGTHTDACHFAA 516 (578)
T ss_pred ccccHHHHHHHHHhhCCCCcEEEEEcchHHHhH-HHHHHHHHHhCCCeEEEEEeCCccCCEEeccccccCCccccCcCCC
Confidence 1 45678889999999999887 49999999999999999999999998875442 1 2356678
Q ss_pred CCHHHHHHHHHH-------------HHHHhHHhCCCCeEEEEEEecCCCCcHHHHHHH
Q 038651 266 WNYTGLVEAFQN-------------AIETAAVEKKDCLCFIEAIVHKDDTGKELLKWG 310 (324)
Q Consensus 266 ~df~~lA~a~G~-------------al~~a~~~~~~~p~lIeV~id~~~~~~~~~~~~ 310 (324)
|||.++|++||+ +|++++ +.++|+||||++|+++.|+......
T Consensus 517 ~d~~~~A~a~G~~~~~v~~~~el~~al~~a~--~~~gp~lIev~~~~~~~p~~~~~~~ 572 (578)
T PRK06112 517 VDHAAIARACGCDGVRVEDPAELAQALAAAM--AAPGPTLIEVITDPSAFPPISFFEP 572 (578)
T ss_pred CCHHHHHHHCCCeEEEeCCHHHHHHHHHHHH--hCCCCEEEEEEcCcccCCCccchhh
Confidence 999999999998 777774 6789999999999999998655443
No 53
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=100.00 E-value=8.2e-52 Score=417.32 Aligned_cols=286 Identities=18% Similarity=0.148 Sum_probs=224.8
Q ss_pred CcCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh-
Q 038651 7 SSSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA- 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~- 83 (324)
..+||+ +++|+|++.+ +|++|.+|||++|+||||||||+|| +|||++|+|||.+|+++||++||.|++|||+|++
T Consensus 31 FgiPG~~~~~l~dal~~--~i~~i~~~hE~~A~~~Adgyar~tg~~~v~~vt~gpG~~N~~~gia~A~~~~~Pvl~i~g~ 108 (530)
T PRK07092 31 FGNPGSTELPFLRDFPD--DFRYVLGLQEAVVVGMADGYAQATGNAAFVNLHSAAGVGNAMGNLFTAFKNHTPLVITAGQ 108 (530)
T ss_pred EeCCCCcchHHHHHHhh--cCCEEEEccHHHHHHHHHHHHHHhCCceEEEeccCchHHHHHHHHHHHhhcCCCEEEEecC
Confidence 468999 9999999964 6999999999999999999999999 9999999999999999999999999999999942
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 109 ~~~~~~~~~~~~~~~d~~~l~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPv~l~iP~d~~~~~~~~~~~~~~~~~ 188 (530)
T PRK07092 109 QARSILPFEPFLAAVQAAELPKPYVKWSIEPARAEDVPAAIARAYHIAMQPPRGPVFVSIPYDDWDQPAEPLPARTVSSA 188 (530)
T ss_pred CcccccCccchhcccCHHHhhcccccceeecCCHHHHHHHHHHHHHHHhcCCCCcEEEEccHHHhhCcccccccCCCCCC
Confidence
Q ss_pred --------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCC-CCCc---------------------
Q 038651 84 --------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPS-AKGM--------------------- 127 (324)
Q Consensus 84 --------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~-gkg~--------------------- 127 (324)
|++||||+|++|+|++++++.+++++|+|++|+||++|++ |||+
T Consensus 189 ~~~~~~~~~~~~~~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~lg~pV~~t~~~~kg~~~~~hp~~~G~~g~~~~~~~~ 268 (530)
T PRK07092 189 VRPDPAALARLGDALDAARRPALVVGPAVDRAGAWDDAVRLAERHRAPVWVAPMSGRCSFPEDHPLFAGFLPASREKISA 268 (530)
T ss_pred CCCCHHHHHHHHHHHHcCCCcEEEECCCcchhhhHHHHHHHHHHHCCcEEEecCCCcCcCCCCCccccCcCCccHHHHHH
Confidence 8899999999999999999999999999999999998876 7986
Q ss_pred cccCCcEEEEEcCccCCccccccc-ccCCCC-EEEEcCCccccccCCChh-----h---HHHHHHHhhh----------h
Q 038651 128 IVEFADAYIFVESIFNDYSSVGYS-LLLNKK-AILMQPDRIVVANGLLLP-----N---RNTSAYESYH----------R 187 (324)
Q Consensus 128 ~l~~aDlvl~lG~~~~~~~t~~~~-~~~~~~-iI~id~d~~~i~~~~~~~-----d---~l~~~~~~~~----------~ 187 (324)
++++|||||++|+++.++.+..|. .+.++. +||||.|+.+++ +.... | +++++.+... +
T Consensus 269 ~l~~aDlvl~lG~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~-~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~~~ 347 (530)
T PRK07092 269 LLDGHDLVLVIGAPVFTYHVEGPGPHLPEGAELVQLTDDPGEAA-WAPMGDAIVGDIRLALRDLLALLPPSARPAPPARP 347 (530)
T ss_pred HHhhCCEEEEECCcccccccCCccccCCCCCeEEEEeCChHHhc-CCCCCCcccCCHHHHHHHHHHhhccccccchhhhh
Confidence 578999999999986554443332 233334 999999998876 22111 2 3443322100 0
Q ss_pred ccC--C-CCCCC----------------------------------C-CCCCC-------CE-----------EecCCCe
Q 038651 188 IYV--P-HGIPL----------------------------------K-SNAHE-------PL-----------MLSGNTA 211 (324)
Q Consensus 188 ~~~--~-~~~~~----------------------------------~-~~~~~-------~l-----------~~~~~~~ 211 (324)
... . ..... . ..+.. .+ +..|+..
T Consensus 348 ~~~~~~~~~~~l~~~~~~~~l~~~l~~~~ivv~d~g~~~~~~~~~~~~~~~~~~~~~~~g~mG~~lp~aiGa~la~p~~~ 427 (530)
T PRK07092 348 MPPPAPAPGEPLSVAFVLQTLAALRPADAIVVEEAPSTRPAMQEHLPMRRQGSFYTMASGGLGYGLPAAVGVALAQPGRR 427 (530)
T ss_pred ccccccCCCCCcCHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHhcCcCCCCceEccCCCcccchHHHHHHHHHhCCCCe
Confidence 000 0 00000 0 00000 01 4457888
Q ss_pred EEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhhC------CCCCCCCCCCHHHHHHHHHH--------
Q 038651 212 VIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIHD------GPYNVIENWNYTGLVEAFQN-------- 277 (324)
Q Consensus 212 vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~------~~~~~l~~~df~~lA~a~G~-------- 277 (324)
+++..||++|.+.. |||+|++||++|+++||+||++|++++..+. ..+.+++++||.++|++||+
T Consensus 428 vv~i~GDG~f~~~~-~eL~ta~~~~lp~~~vv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~G~~~~~v~~~ 506 (530)
T PRK07092 428 VIGLIGDGSAMYSI-QALWSAAQLKLPVTFVILNNGRYGALRWFAPVFGVRDVPGLDLPGLDFVALARGYGCEAVRVSDA 506 (530)
T ss_pred EEEEEeCchHhhhH-HHHHHHHHhCCCcEEEEEeChHHHHHHHHHHhhCCCCCCCCCCCCCCHHHHHHHCCCeEEEeCCH
Confidence 99999999999874 9999999999999999999999999876541 13456788999999999998
Q ss_pred -----HHHHhHHhCCCCeEEEEEEec
Q 038651 278 -----AIETAAVEKKDCLCFIEAIVH 298 (324)
Q Consensus 278 -----al~~a~~~~~~~p~lIeV~id 298 (324)
++++++ +.++|+||||++|
T Consensus 507 ~~l~~al~~a~--~~~~p~liev~~d 530 (530)
T PRK07092 507 AELADALARAL--AADGPVLVEVEVA 530 (530)
T ss_pred HHHHHHHHHHH--hCCCCEEEEEEcC
Confidence 666664 6889999999986
No 54
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=100.00 E-value=2.7e-52 Score=424.03 Aligned_cols=301 Identities=17% Similarity=0.116 Sum_probs=233.4
Q ss_pred CcCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh-
Q 038651 7 SSSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA- 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~- 83 (324)
..+||+ +++|+|++.++++|++|.+|||++|+||||||+|+|| +|||++|+|||++|++|||++||.|++|||+||+
T Consensus 28 FgvpG~~~~~l~~~l~~~~~i~~v~~~hE~~A~~aAdgyar~tg~~~v~~vt~GpG~~N~l~~i~~A~~~~~Pvl~IsG~ 107 (568)
T PRK07449 28 VIAPGSRSTPLTLAAAEHPRLRLHTHFDERSAGFLALGLAKASKRPVAVIVTSGTAVANLYPAVIEAGLTGVPLIVLTAD 107 (568)
T ss_pred EECCCCccHHHHHHHHhCCCcEEEeecCcccHHHHHHHHHHhhCCCEEEEECCccHHHhhhHHHHHHhhcCCcEEEEECC
Confidence 368999 9999999976567999999999999999999999999 9999999999999999999999999999999942
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 108 ~~~~~~~~~~~q~~d~~~~~~~~t~~~v~~~~~~~~~~~~~~~~~~~a~~~a~~~~~GPV~i~iP~Dv~~~~~~~~~~~~ 187 (568)
T PRK07449 108 RPPELRDCGANQAIDQLGLFGSYPFTSLALPEPTQDILAYWLVTTIDAALAAQTLQAGPVHINCPFREPLYPDDDDDTGS 187 (568)
T ss_pred CCHHHhcCCCCceecHhhHhhhhhhhccCCCCCCchhHHHHHHHHHHHHHHhcCCCCCCEEEeCCCCCCCCCCCcccccc
Confidence
Q ss_pred -------------------------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc-----
Q 038651 84 -------------------------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM----- 127 (324)
Q Consensus 84 -------------------------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~----- 127 (324)
|++ |||+|++|+|+++++ +++.+|+|++|+||+||++|||.
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-krPvii~G~g~~~~~--~~l~~lae~~g~PV~tt~~~~~~~~~~h 264 (568)
T PRK07449 188 PWLAPLGDWWQDDWLRQTVQPEVTSQRDWDIWRQ-KRGVVIAGRLSAEEG--QAIAALAQLLGWPLLADPLSPRNYAPLH 264 (568)
T ss_pred cccccccccccccccccccCccccchhhhhhhcc-CCeEEEECCCChHHH--HHHHHHHHHCCCeEEEecCCCCCCCCCC
Confidence 122 899999999998543 99999999999999999999986
Q ss_pred ------------------cccCCcEEEEEcCccCCcccccccccCCCCEEEEcCCccccccCCChh------h---HHHH
Q 038651 128 ------------------IVEFADAYIFVESIFNDYSSVGYSLLLNKKAILMQPDRIVVANGLLLP------N---RNTS 180 (324)
Q Consensus 128 ------------------~l~~aDlvl~lG~~~~~~~t~~~~~~~~~~iI~id~d~~~i~~~~~~~------d---~l~~ 180 (324)
.+++||+||+||+++++..+..|....+.++||||.|+.+++ +...+ | +|++
T Consensus 265 p~~~G~~g~~~~~~~~~~~l~~aD~vl~vG~~l~~~~~~~~~~~~~~~~i~id~d~~~~~-~~~~~~~~i~~d~~~~l~~ 343 (568)
T PRK07449 265 PQPIPCYDLWLRNPKAAEELLQPDIVIQFGSPPTSKRLLQWLADCEPEYWVVDPGPGRLD-PAHHATRRLTASVATWLEA 343 (568)
T ss_pred ccccchHHHHhcCchhhhhcCCCCEEEEeCCCCCchhHHHHHhcCCCCEEEECCCCCcCC-CCCCceEEEEEcHHHHHHh
Confidence 567999999999999776655553222335999999999887 22111 2 2221
Q ss_pred --------HH-------Hhhhh----cc-----------------CCCCCCC---------------C-CCCC-------
Q 038651 181 --------AY-------ESYHR----IY-----------------VPHGIPL---------------K-SNAH------- 201 (324)
Q Consensus 181 --------~~-------~~~~~----~~-----------------~~~~~~~---------------~-~~~~------- 201 (324)
.. ..|.. .. .+..... . ..+.
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~l~~~~iv~~~~g~~~~~~~~~~~~~~~~~~~~~~g 423 (568)
T PRK07449 344 HPAEKRKPWLQEWQALNEKAREAVREQLAEDTFTEAKVAAALADLLPEGGQLFVGNSLPVRDVDAFGQLPDGYPVYSNRG 423 (568)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHhCCCCCeEEEECcHHHHHHHHccCcCCCceEEecCC
Confidence 00 00100 00 0000000 0 0000
Q ss_pred -CCE----------EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhh---C-----CCCCC
Q 038651 202 -EPL----------MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIH---D-----GPYNV 262 (324)
Q Consensus 202 -~~l----------~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~---~-----~~~~~ 262 (324)
..+ .+.++..|++.+||++|.|.. |||+|++||++|+++||+||++|++++.++ . ..+..
T Consensus 424 ~~~~G~~lpaaiGaala~~~~vv~i~GDGsf~~~~-~eL~Ta~r~~l~i~ivVlNN~g~~~~~~~~~~~~~~~~~~~~~~ 502 (568)
T PRK07449 424 ASGIDGLLSTAAGVARASAKPTVALIGDLSFLHDL-NGLLLLKQVPAPLTIVVVNNNGGGIFSLLPQPEEEPVFERFFGT 502 (568)
T ss_pred ccchhhHHHHHHHHHhcCCCCEEEEechHHhhcCc-HHHHhhcccCCCeEEEEEECCCCccccCCCCCCCcchhhHhhcC
Confidence 001 233788899999999999874 999999999999999999999999765432 1 12234
Q ss_pred CCCCCHHHHHHHHHH-------------HHHHhHHhCCCCeEEEEEEecCCCCcHHHHHHHHHhh
Q 038651 263 IENWNYTGLVEAFQN-------------AIETAAVEKKDCLCFIEAIVHKDDTGKELLKWGSRVS 314 (324)
Q Consensus 263 l~~~df~~lA~a~G~-------------al~~a~~~~~~~p~lIeV~id~~~~~~~~~~~~~~~~ 314 (324)
..+|||+++|++||+ +|++++ +.++|+||||++|+++.++.+.++...++
T Consensus 503 ~~~~df~~lA~a~G~~~~~V~~~~eL~~al~~a~--~~~~p~lIev~id~~~~~~~~~~~~~~~~ 565 (568)
T PRK07449 503 PHGVDFAHAAAMYGLEYHRPETWAELEEALADAL--PTPGLTVIEVKTNRSQGAQLLQALLAQVS 565 (568)
T ss_pred CCCCCHHHHHHHcCCCccCCCCHHHHHHHHHHHh--cCCCCEEEEEeCChhhhHHHHHHHHHHhh
Confidence 467999999999998 677774 78999999999999999999988887554
No 55
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=100.00 E-value=4e-49 Score=376.08 Aligned_cols=291 Identities=20% Similarity=0.265 Sum_probs=228.2
Q ss_pred CCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh---
Q 038651 9 SPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA--- 83 (324)
Q Consensus 9 ~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~--- 83 (324)
..|. +.++..+... .||+||.+||||+|+|||++|+++|| +|||++++|||.+|+++|+++|+.++.|+|+|.+
T Consensus 35 iVGipV~el~~aaqa-lGIk~I~~RnEqaA~yAA~A~gyLt~kpGV~lVvsGPGl~hal~gv~NA~~n~wPll~IgGsa~ 113 (571)
T KOG1185|consen 35 IVGIPVIELAVAAQA-LGIKFIGTRNEQAAVYAASAYGYLTGKPGVLLVVSGPGLTHALAGVANAQMNCWPLLLIGGSAS 113 (571)
T ss_pred EeccchHHHHHHHHH-cCCeEeecccHHHHHHHHHHhhhhcCCCeEEEEecCChHHHHHHHhhhhhhccCcEEEEecccc
Confidence 4577 8899999988 48999999999999999999999999 9999999999999999999999999999999921
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 114 ~~~~~rGafQe~dQvel~rp~~K~~~r~~~~~~I~~~i~kA~r~a~~G~PG~~yvD~P~d~v~~~~~~e~~~~~~~p~~~ 193 (571)
T KOG1185|consen 114 TLLENRGAFQELDQVELFRPLCKFVARPTSVRDIPPTIRKAVRAAMSGRPGPVYVDLPADVVLPSKMVEKEIDVSEPQPP 193 (571)
T ss_pred hhhhcccccccccHHhhhhhhhhhccCCCChhhccHHHHHHHHHHhcCCCCceEEecccceeeeecccccccccCCCCCC
Confidence
Q ss_pred --------------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc---------------c
Q 038651 84 --------------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM---------------I 128 (324)
Q Consensus 84 --------------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~---------------~ 128 (324)
|++||||+|++|.|+.++.+.++|++|.|.+|+|++.|+||||+ +
T Consensus 194 ~p~P~i~~p~~s~i~~av~llk~AKrPLlvvGkgAa~~~ae~~l~~~Ve~~glPflptpMgKGll~d~hPl~v~~aRS~A 273 (571)
T KOG1185|consen 194 IPLPPIPGPPPSQIQKAVQLLKSAKRPLLVVGKGAAYAPAEDQLRKFVETTGLPFLPTPMGKGLLPDNHPLNVSSARSLA 273 (571)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCcEEEEecccccCccHHHHHHHHHhcCCCcccCcccccCCCCCCchhhhHHHHHH
Confidence 89999999999999999999999999999999999999999999 9
Q ss_pred ccCCcEEEEEcCccCCcccccccccCCCC--EEEEcCCccccccCCCh-h------hH---HHHHHH-------------
Q 038651 129 VEFADAYIFVESIFNDYSSVGYSLLLNKK--AILMQPDRIVVANGLLL-P------NR---NTSAYE------------- 183 (324)
Q Consensus 129 l~~aDlvl~lG~~~~~~~t~~~~~~~~~~--iI~id~d~~~i~~~~~~-~------d~---l~~~~~------------- 183 (324)
+++||+||++|+|++..-.++....+.++ +||||+++.+++ ++.. + |+ +.++.+
T Consensus 274 Lk~ADvvll~GarlnwiLhfG~~Pk~~kd~KfIqvd~n~Eel~-~n~~k~~v~i~gDig~~~~~L~e~l~~~~~~~~~s~ 352 (571)
T KOG1185|consen 274 LKKADVVLLAGARLNWILHFGLPPKWSKDVKFIQVDINPEELG-NNFVKPDVAIQGDIGLFVLQLVEELQDQPWTWGPST 352 (571)
T ss_pred HhhCCEEEEecceeeEEEecCCCCccCCCceEEEEeCCHHHHh-cccCCCCceeeecHHHHHHHHHHHhcCCCcccCCch
Confidence 99999999999999866555543333333 999999999998 3311 1 31 111110
Q ss_pred hhhh----------------cc------------------CCCCCC-----------------CCCCCCCCE--------
Q 038651 184 SYHR----------------IY------------------VPHGIP-----------------LKSNAHEPL-------- 204 (324)
Q Consensus 184 ~~~~----------------~~------------------~~~~~~-----------------~~~~~~~~l-------- 204 (324)
+|.+ .. .+.... ....|..+|
T Consensus 353 ~w~k~Lrek~~~ne~~~~~~~~~~~~pLN~~~~~~~vre~L~~~d~ilVsEGantmdigr~~l~~~~Pr~rLDaGtfgTM 432 (571)
T KOG1185|consen 353 DWVKELREKDKQNEAAVEEKAAKKSTPLNYYQVLQTVRELLPNDDTILVSEGANTMDIGRTLLPPRGPRRRLDAGTFGTM 432 (571)
T ss_pred hHHHHHHHHHHhhHHHHHHHhhccCCCCcHHHHHHHHHHhcCCCCcEEEecCCcchhhhhhhccCCCcccccCCcccccc
Confidence 1100 00 000000 000111111
Q ss_pred -----------EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCc-hhhhhh----h--hCC-----CCC
Q 038651 205 -----------MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGN-YTIEVE----I--HDG-----PYN 261 (324)
Q Consensus 205 -----------~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~-yg~~~~----~--~~~-----~~~ 261 (324)
...|++.|++..||+.|+++. +|++|++||+||++++|+||+| ||..+. + ++. +-.
T Consensus 433 GVG~Gfalaaa~~~P~~~V~~veGDsaFGfSa-ME~ET~vR~~Lpvv~vV~NN~Giyg~d~~~~~~I~e~~~~~~~p~~~ 511 (571)
T KOG1185|consen 433 GVGLGFALAAALAAPDRKVVCVEGDSAFGFSA-MELETFVRYKLPVVIVVGNNNGIYGLDDDGWKQISEQDPTLDLPPTA 511 (571)
T ss_pred ccchhHHHHHHhhCCCCeEEEEecCcccCcch-hhHHHHHHhcCCeEEEEecCCcccccCcccHHHHhhcCcccCCCccc
Confidence 456899999999999999986 9999999999999999997754 665332 1 211 224
Q ss_pred CCCCCCHHHHHHHHHH-------------HHHHhHHhCCCCeEEEEEEecCCCCc
Q 038651 262 VIENWNYTGLVEAFQN-------------AIETAAVEKKDCLCFIEAIVHKDDTG 303 (324)
Q Consensus 262 ~l~~~df~~lA~a~G~-------------al~~a~~~~~~~p~lIeV~id~~~~~ 303 (324)
.+.+.+|.+++++||. +++++. ...++|+||+|.|+|++..
T Consensus 512 l~~~~rY~~v~ka~G~kG~~v~t~~el~~~l~~a~-q~~~~psvINVlI~p~~~r 565 (571)
T KOG1185|consen 512 LLANTRYDKVAKAFGGKGYFVSTVEELLAALQQAC-QDTDKPSVINVLIGPTAFR 565 (571)
T ss_pred ccccccHHHHHHHcCCCceeeCCHHHHHHHHHHHH-hcCCCCeEEEEEecccccc
Confidence 5678999999999998 666664 4567999999999997754
No 56
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=100.00 E-value=2.1e-43 Score=392.37 Aligned_cols=303 Identities=17% Similarity=0.092 Sum_probs=224.5
Q ss_pred cCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh--
Q 038651 8 SSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA-- 83 (324)
Q Consensus 8 ~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~-- 83 (324)
.+||+ +++|+|++.++++|++|.+|||++|+||||||||+|| +|||++|+|||++|+++||++|+.|++|||+||+
T Consensus 321 g~PG~~~~pL~dAl~~~~~i~~i~~rhErsAafmAdGyAR~TgkpgV~i~TsGPG~tN~l~av~eA~~d~vPlLvItgd~ 400 (1655)
T PLN02980 321 VAPGSRSSPLAIAASNHPLTTCIACFDERSLAFHALGYARGSLKPAVVITSSGTAVSNLLPAVVEASQDFVPLLLLTADR 400 (1655)
T ss_pred EeCCCCCHHHHHHHHhCCCCeEEeccCcchHHHHHHHHHHHhCCCEEEEEeCcHHHHHHHHHHHHHhhcCCCEEEEeCCC
Confidence 58999 9999999976567999999999999999999999999 9999999999999999999999999999999952
Q ss_pred -----------------------------------------------------------------h--------------
Q 038651 84 -----------------------------------------------------------------L-------------- 84 (324)
Q Consensus 84 -----------------------------------------------------------------L-------------- 84 (324)
+
T Consensus 401 p~~~~~~ga~Q~iDq~~lf~pvtK~s~~v~~p~~~~~~~~l~~~v~~A~~~A~s~rpGPVhL~iP~~~pld~~~~~~~~~ 480 (1655)
T PLN02980 401 PPELQDAGANQAINQVNHFGSFVRFFFNLPPPTDLIPARMVLTTLDSAVHWATSSPCGPVHINCPFREPLDGSPTNWMSS 480 (1655)
T ss_pred CHHHhcCCCCcccchhhHHHhhhheeecCCCccchhhHHHHHHHHHHHHHHHhCCCCCCEEEECccCCcccccccccccc
Confidence 1
Q ss_pred -----------------------------------------hcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCC
Q 038651 85 -----------------------------------------LKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPS 123 (324)
Q Consensus 85 -----------------------------------------~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~ 123 (324)
++||||+|++|+|+.++++. ++.+|||++|+||++|++
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~L~~AkRPvIvaG~G~~~~~a~-~~~~LAe~l~~PV~tt~~ 559 (1655)
T PLN02980 481 CLKGLDMWMSNAEPFTKYIQMQSSKADGDTTGQITEVLEVIQEAKRGLLLIGAIHTEDDIW-AALLLAKHLMWPVVADIL 559 (1655)
T ss_pred ccccchhcccCCCccccccccccccccccchhhHHHHHHHHHhCCCcEEEEcCCCchHHHH-HHHHHHHhCCCeEEEeCC
Confidence 11689999999998776665 569999999999999987
Q ss_pred C-C------Cc------------------------cccCCcEEEEEcCccCC-cccccccccCCCCEEEEcCCccccccC
Q 038651 124 A-K------GM------------------------IVEFADAYIFVESIFND-YSSVGYSLLLNKKAILMQPDRIVVANG 171 (324)
Q Consensus 124 g-k------g~------------------------~l~~aDlvl~lG~~~~~-~~t~~~~~~~~~~iI~id~d~~~i~~~ 171 (324)
+ | |+ .++++||||+||++++. +.++.+....+.++||||+|+.++++.
T Consensus 560 sg~~~~~~~g~ipe~~~~pl~~g~~g~~~~~~~~~~~~~aDlVl~iG~rl~s~~~t~~~~~~~~~~~I~ID~d~~~i~~~ 639 (1655)
T PLN02980 560 SGLRLRKLFKSFPEFELNILFVDHLDHALLSDSVRNWIQFDVVIQIGSRITSKRVSQMLEKCFPFSYILVDKHPCRHDPS 639 (1655)
T ss_pred CCCCCCccccccccccccccccchHHHHhCchhhhccCCCCEEEEeCCccccHHHHHHHHhCCCCeEEEECCCCCccCCc
Confidence 4 5 22 34689999999999974 344333222333499999999988721
Q ss_pred CChh-----h---HHHHHH--------Hhhh-------h-----c------c---------------CCCCC--------
Q 038651 172 LLLP-----N---RNTSAY--------ESYH-------R-----I------Y---------------VPHGI-------- 194 (324)
Q Consensus 172 ~~~~-----d---~l~~~~--------~~~~-------~-----~------~---------------~~~~~-------- 194 (324)
.... | +++.+. ..|. . . . .+...
T Consensus 640 ~~~~~~i~~D~~~~l~~L~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~Lp~d~ivv~d~g~ 719 (1655)
T PLN02980 640 HLVTHRVQSNIVQFADCLLKAQFPRRRSKWHGHLQALDGMVAQEISFQIHAESSLTEPYVAHVISEALTSDSALFIGNSM 719 (1655)
T ss_pred ccceEEEEeCHHHHHHHhhhccCcchhHHHHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHHHHHhCCCCCeEEEECcH
Confidence 1111 2 222110 0110 0 0 0 00000
Q ss_pred ------CC-----C------------CCCCCC---------------E------EecCCCeEEEecCchHHhhhHHHHHH
Q 038651 195 ------PL-----K------------SNAHEP---------------L------MLSGNTAVIAETGDSWFNCQKDVDVS 230 (324)
Q Consensus 195 ------~~-----~------------~~~~~~---------------l------~~~~~~~vv~d~G~~~~~~~~~qEL~ 230 (324)
.. . ..+... | .+..+..|++.+||++|.|.. |||+
T Consensus 720 ~ird~~~~~~~~~~~~~~~~~~~~~~~~p~~~i~~~~~~G~mG~~G~lpaAIGaala~~r~Vv~i~GDGsF~m~~-~EL~ 798 (1655)
T PLN02980 720 AIRDADMYGCSSENYSSRIVDMMLSAELPCQWIQVAGNRGASGIDGLLSTAIGFAVGCNKRVLCVVGDISFLHDT-NGLS 798 (1655)
T ss_pred HHHHHHHcCCccccccccccccccccccccccceEEecCCccchhhhHHHHHHHhhcCCCCEEEEEehHHHHhhh-hHHH
Confidence 00 0 000000 1 122277889999999999974 9999
Q ss_pred HHHHh--CCCeEEEEEeCCchhhhhhhh------C----CCCCCCCCCCHHHHHHHHHH-------------HHHHhHHh
Q 038651 231 TMLRC--EQKNIIFLINNGNYTIEVEIH------D----GPYNVIENWNYTGLVEAFQN-------------AIETAAVE 285 (324)
Q Consensus 231 Ta~r~--~lpviivV~NN~~yg~~~~~~------~----~~~~~l~~~df~~lA~a~G~-------------al~~a~~~ 285 (324)
|++|+ ++|++|||+||++|++++..+ . ..+....++||.++|++||+ +|++++
T Consensus 799 Ta~r~~~~lpi~iVV~NN~gggi~~~l~~~~~~~~~~~~~~~~~~~~~df~~lA~a~G~~~~rV~~~~eL~~aL~~a~-- 876 (1655)
T PLN02980 799 ILSQRIARKPMTILVINNHGGAIFSLLPIAKRTEPRVLNQYFYTSHDISIENLCLAHGVRHLHVGTKSELEDALFTSQ-- 876 (1655)
T ss_pred HhhcccCCCCEEEEEEeCCCcHhhhcCccCCCCcchhHHHHhcCCCCCCHHHHHHHcCCceeecCCHHHHHHHHHHhh--
Confidence 99995 999999999999999987531 1 11222356999999999999 666664
Q ss_pred CCCCeEEEEEEecCCCCcHHHHHHHHHhh
Q 038651 286 KKDCLCFIEAIVHKDDTGKELLKWGSRVS 314 (324)
Q Consensus 286 ~~~~p~lIeV~id~~~~~~~~~~~~~~~~ 314 (324)
+.++|+||||.+|+++.++....+.++..
T Consensus 877 ~~~~p~lIEV~t~~~~~~~~~~~~~~~~~ 905 (1655)
T PLN02980 877 VEQMDCVVEVESSIDANAAFHSTLRKFAC 905 (1655)
T ss_pred ccCCCEEEEEecChhhhHHHHHHHHHHHH
Confidence 67899999999999888887777665543
No 57
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=4.8e-42 Score=325.93 Aligned_cols=294 Identities=18% Similarity=0.189 Sum_probs=233.4
Q ss_pred chHHHHhhhcCC-CCeEeecCchHHHHHHHHHHhhhcC---ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh-----
Q 038651 13 SSSLLDHLIAEP-GSRDVGCCNELNAGYAADGSARARA---VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA----- 83 (324)
Q Consensus 13 ~~~l~dal~~~~-~i~~i~~rhE~~A~~aAdgYaR~tg---~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~----- 83 (324)
+..+=+||+..+ .+.....+|||+-+|||-||+|... +-+|.++.|||++|++|+-+.|..++.|+|+|-+
T Consensus 43 VaGiGeAL~~~~~~l~~yqg~NEQgMAhaAiayaKq~~Rrr~~A~tsSiGPGA~NmvTaAalA~~NrlPvLllPgDvfA~ 122 (617)
T COG3962 43 VAGIGEALYQVRDHLPTYQGHNEQGMAHAAIAYAKQHRRRRIYAVTSSIGPGAANMVTAAALAHVNRLPVLLLPGDVFAT 122 (617)
T ss_pred hhhhHHHHHhCccccchhhcccHhHHHHHHHHHHHHHhhceeeEEecccCCcHHHHHHHHHHHHhhcCceEeeccchhcc
Confidence 667888887654 4899999999999999999999853 5777788999999999999999999999999910
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 123 R~PDPVLQQ~E~~~d~~it~NDcfrPVSRYfDRItRPEQl~sal~rA~~VmTDPA~~GpvTl~l~QDVq~eA~Dyp~~FF 202 (617)
T COG3962 123 RQPDPVLQQLEQFGDGTITTNDCFRPVSRYFDRITRPEQLMSALPRAMRVMTDPADCGPVTLALCQDVQAEAYDYPESFF 202 (617)
T ss_pred cCCChHHHhhhccccCceecccccccHHHHhhhcCCHHHHHHHHHHHHHHhCChhhcCceEEEechhhhhhhcCCcHHhh
Confidence
Q ss_pred -----------------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc-------------
Q 038651 84 -----------------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM------------- 127 (324)
Q Consensus 84 -----------------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~------------- 127 (324)
|++||||+|++|+|+.++++.++|++|+|..||||+.|..|||.
T Consensus 203 ~~rv~~~rR~~Pd~~eL~~A~~lik~ak~PlIvaGGGv~YS~A~~~L~af~E~~~iPv~ETQaGKsal~~dhplNlG~vG 282 (617)
T COG3962 203 EKRVWRIRRPPPDERELADAAALIKSAKKPLIVAGGGVLYSGAREALRAFAETHGIPVVETQAGKSALAWDHPLNLGGVG 282 (617)
T ss_pred hhhhhhccCCCCCHHHHHHHHHHHHhcCCCEEEecCceeechHHHHHHHHHHhcCCceEeccCCcccccccCcccccccc
Confidence 89999999999999999999999999999999999999999998
Q ss_pred ---------cccCCcEEEEEcCccCCcccccccccCC-CC-EEEEcCCccccccCCChh---hH---HHHH---HH----
Q 038651 128 ---------IVEFADAYIFVESIFNDYSSVGYSLLLN-KK-AILMQPDRIVVANGLLLP---NR---NTSA---YE---- 183 (324)
Q Consensus 128 ---------~l~~aDlvl~lG~~~~~~~t~~~~~~~~-~~-iI~id~d~~~i~~~~~~~---d~---l~~~---~~---- 183 (324)
+.++|||||.||||+.|++|++|..+-+ .. ++.|++.+.+-.|...++ |. |+++ +.
T Consensus 283 vTGt~AAN~~A~~ADlVigiGTR~~DFTTgS~alF~~~~~k~l~lNV~~~da~K~~a~~lvaDAr~~L~~L~~~L~g~~~ 362 (617)
T COG3962 283 VTGTLAANRAAEEADLVIGIGTRLQDFTTGSKALFKNPGVKFLNLNVQPFDAYKHDALPLVADARAGLEALSEALGGYRT 362 (617)
T ss_pred ccchHHHHhhhhhcCEEEEecccccccccccHHHhcCCCceEEEeecccccccccccceehhHHHHHHHHHHHHhccccc
Confidence 6789999999999999999999887653 33 999999988766333333 42 2221 11
Q ss_pred -------------hhhhc-cCCC----C-CCC------------CCCCCC---------------------C--------
Q 038651 184 -------------SYHRI-YVPH----G-IPL------------KSNAHE---------------------P-------- 203 (324)
Q Consensus 184 -------------~~~~~-~~~~----~-~~~------------~~~~~~---------------------~-------- 203 (324)
.|.+. ..+. . ... ...++. +
T Consensus 363 ~~~w~~~~~~~~~~w~~~~~~~~a~~~~lnt~ptq~~vigav~~~~~~~svvvcAAGsLPGdLhkLW~~~~p~~YH~EYg 442 (617)
T COG3962 363 AAGWTDERERLKAAWDAEADAPTAKNHFLNTLPTQTQVIGAVQRTISDDSVVVCAAGSLPGDLHKLWRAGVPGTYHLEYG 442 (617)
T ss_pred chhHHHHHHHhhhhhhhhcccccccccccccCccchhHHHHHHhhcCCCcEEEEeCCCCcHHHHHHhccCCCCceeeeec
Confidence 12110 0000 0 000 000000 0
Q ss_pred -----------E---EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhh----CCCCC----
Q 038651 204 -----------L---MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIH----DGPYN---- 261 (324)
Q Consensus 204 -----------l---~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~----~~~~~---- 261 (324)
| ..+||+-|++-+||++|.|.. .||.|+++++.++++++++|++||.|..+| ..+|+
T Consensus 443 fSCMGYEiaG~lG~K~a~pdreV~vmVGDGSymMln-SEL~Tsv~~g~Ki~Vvl~DN~GyGCIn~LQm~~Gg~sf~~~~r 521 (617)
T COG3962 443 FSCMGYEIAGGLGAKAAEPDREVYVMVGDGSYMMLN-SELATSVMLGKKIIVVLLDNRGYGCINRLQMATGGASFNNLLR 521 (617)
T ss_pred ccccccccccccccccCCCCCeEEEEEcccchhhhh-HHHHHHHHcCCeEEEEEECCCCcchhhhhhhhcCcchhhhhhh
Confidence 0 567888899999999999986 999999999999999999999999988776 22331
Q ss_pred ------CCCCCCHHHHHHHHHH-------------HHHHhHHhCCCCeEEEEEEecCCCCcHHHHHH
Q 038651 262 ------VIENWNYTGLVEAFQN-------------AIETAAVEKKDCLCFIEAIVHKDDTGKELLKW 309 (324)
Q Consensus 262 ------~l~~~df~~lA~a~G~-------------al~~a~~~~~~~p~lIeV~id~~~~~~~~~~~ 309 (324)
.+.++||++.|++||+ ||++|. ++++++||+|.+||..+++.-..|
T Consensus 522 ~~~~e~~~~~vDfA~~A~s~Ga~~~kv~~i~eL~aAL~~Ak--~~~~ttvi~I~t~P~~~t~~g~~W 586 (617)
T COG3962 522 DTDHEEEILQVDFAAHAESYGAKAYKVGTIEELEAALADAK--ASDRTTVIVIDTDPKTTTDDGGSW 586 (617)
T ss_pred hhcccCCCCcccHHHHHhhcCceeEecCCHHHHHHHHHHHH--hCCCCEEEEEecCCccccCCCCce
Confidence 2678999999999999 788775 899999999999998766644444
No 58
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=100.00 E-value=2.5e-41 Score=310.91 Aligned_cols=293 Identities=17% Similarity=0.201 Sum_probs=234.2
Q ss_pred CcCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhc-C-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh
Q 038651 7 SSSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARAR-A-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~t-g-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~ 83 (324)
..+||. +.|||.+|++..+|++|+.||-.+|++||+||.|.+ | +|||+.|+||..|.++||++.|+.|++|+|+||+
T Consensus 23 fgvpgaainp~ysalr~~g~i~hvlarhvegashmaegytra~~gnigvcigtsgpagtdmitglysa~adsipilcitg 102 (592)
T COG3960 23 FGVPGAAINPFYSALRKHGGIRHILARHVEGASHMAEGYTRATAGNIGVCIGTSGPAGTDMITGLYSASADSIPILCITG 102 (592)
T ss_pred cCCCccccCHHHHHHHhcCcHHHHHHHHhcchhhhhcccccccCCceEEEecCCCCCccchhhhhhhcccccccEEEecC
Confidence 468999 999999999888899999999999999999999986 7 9999999999999999999999999999999963
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 103 qaprarl~kedfqavdi~~ia~pv~kwavtv~epalvp~v~qkafhlmrs~rpgpvlidlp~dvq~aeiefd~d~yepl~ 182 (592)
T COG3960 103 QAPRARLHKEDFQAVDIEAIAKPVSKWAVTVREPALVPRVLQQAFHLMRSGRPGPVLIDLPFDVQVAEIEFDPDMYEPLP 182 (592)
T ss_pred CCchhhhchhhhhhhhHHHhhhhhhhhhhhhcchhhhHHHHHHHHHHHhcCCCCCeEEecccceEEEEEecCccccCcCC
Confidence
Q ss_pred -----------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc-------------------
Q 038651 84 -----------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM------------------- 127 (324)
Q Consensus 84 -----------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~------------------- 127 (324)
|.+|+||+|++|+|+..+++.+.+.+|||.+|+||+.|+||.|+
T Consensus 183 ~~kpaatr~qaekalaml~~aerplivagggiinadaa~l~~efael~gvpviptlmgwg~ipddhplmagm~glqtshr 262 (592)
T COG3960 183 VYKPAATRVQAEKALAMLIQAERPLIVAGGGVINADAAALLQEFAELTGVPVIPTLMGWGCIPDDHPLMAGMVGLQTSHR 262 (592)
T ss_pred cCCchhHHHHHHHHHHHHhhccCcEEEecCceecccHHHHHHHHHHHcCCcccchhccccccCCcchhhcccccceeccc
Confidence 88999999999999999999999999999999999999999998
Q ss_pred ----cccCCcEEEEEcCccCCcccccccccCCCC-EEEEcCCccccccCCChhhH---------HHHHH---Hhhhh---
Q 038651 128 ----IVEFADAYIFVESIFNDYSSVGYSLLLNKK-AILMQPDRIVVANGLLLPNR---------NTSAY---ESYHR--- 187 (324)
Q Consensus 128 ----~l~~aDlvl~lG~~~~~~~t~~~~~~~~~~-iI~id~d~~~i~~~~~~~d~---------l~~~~---~~~~~--- 187 (324)
.+-.+|+|+.||.||..+.|++...+-..+ +||+|++|..|| +..-||+ |+.++ .+|+.
T Consensus 263 ygnatll~sd~vfgignrwanrhtgsv~vyt~gr~fihvdieptqig-rvf~pdlgivsda~aal~~~ldva~ewk~agk 341 (592)
T COG3960 263 YGNATLLASDMVFGIGNRWANRHTGSVEVYTEGRKFIHVDIEPTQIG-RVFCPDLGIVSDAKAALTLLLDVAQEWKKAGK 341 (592)
T ss_pred ccchhhhhhhheeeccchhhhcccCceeeeecCceEEEEeccccccc-eeecCccceeechHHHHHHHHHHHHHHHHcCC
Confidence 566899999999999988888654444444 999999999998 3322331 22111 11210
Q ss_pred -----------------c-----cC--CC-CCC----------C--------------------CCCCC--------CCE
Q 038651 188 -----------------I-----YV--PH-GIP----------L--------------------KSNAH--------EPL 204 (324)
Q Consensus 188 -----------------~-----~~--~~-~~~----------~--------------------~~~~~--------~~l 204 (324)
. +. |. ++. . ...|. .+|
T Consensus 342 l~~~~aw~~~cq~rkrtl~rkthfd~vp~kpqrvyeemn~~fgrd~~yvstiglsqia~aqflhv~~pr~wincgqagpl 421 (592)
T COG3960 342 LPCRKAWVADCQQRKRTLLRKTHFDNVPVKPQRVYEEMNKAFGRDVCYVTTIGLSQIAAAQFLHVFKPRHWINCGQAGPL 421 (592)
T ss_pred CccHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHHhhcCCceeEEEeccHHHHhhhhhhhhcCCcceeecCccCCc
Confidence 0 00 00 000 0 00011 122
Q ss_pred -----------EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhhCC---CCC------CC-
Q 038651 205 -----------MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIHDG---PYN------VI- 263 (324)
Q Consensus 205 -----------~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~~---~~~------~l- 263 (324)
...|++.||...||-.|.+. ..||...+++++|.+.+|.||..+|.+|+.|.+ .|+ .+
T Consensus 422 gwtipaalgv~~adp~r~vvalsgdydfqfm-ieelavgaq~k~pyihv~vnnaylglirqaqr~f~mdy~v~laf~nin 500 (592)
T COG3960 422 GWTIPAALGVCAADPKRNVVAISGDYDFQFL-IEELAVGAQFKIPYIHVLVNNAYLGLIRQAQRAFDMDYCVQLAFENIN 500 (592)
T ss_pred ccccchhhceeecCCCCceEEeecCchHHHH-HHHHhhhhcccCceEEEEecchHHHHHHHHHhcCCccceeeehhhccC
Confidence 56789999999999888876 499999999999999999999999999987622 221 11
Q ss_pred ------CCCCHHHHHHHHHH-------------HHHHhHH--hCCCCeEEEEEEecCCC
Q 038651 264 ------ENWNYTGLVEAFQN-------------AIETAAV--EKKDCLCFIEAIVHKDD 301 (324)
Q Consensus 264 ------~~~df~~lA~a~G~-------------al~~a~~--~~~~~p~lIeV~id~~~ 301 (324)
-.+|..+++|++|| ++++|.. ..+.-|+++|+.+.+-.
T Consensus 501 ~~~~~gygvdhv~v~eglgckairv~~p~e~a~af~~a~~lm~eh~vpvvve~ilervt 559 (592)
T COG3960 501 SSEVNGYGVDHVKVAEGLGCKAIRVFKPEDIAPAFEQAKALMAQHRVPVVVEVILERVT 559 (592)
T ss_pred CccccccCccceeehhccCceeEEecChHHhhHHHHHHHHHHHhcCCCeeeehHHHHhh
Confidence 24899999999999 6766541 46788999999987743
No 59
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=100.00 E-value=2.6e-38 Score=311.75 Aligned_cols=161 Identities=22% Similarity=0.161 Sum_probs=144.0
Q ss_pred CcCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh-
Q 038651 7 SSSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA- 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~- 83 (324)
..+||+ +++|+|++.++++|++|.+|||++|+||||||||+|| +|||++|+|||++|++|||++||.|++|||+||+
T Consensus 19 Fg~pG~~~~~l~dal~~~~~i~~v~~~hE~~A~~mAdgyar~tg~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~g~ 98 (432)
T TIGR00173 19 VISPGSRSTPLALAAAEHPRLRVHVHIDERSAGFFALGLAKASGRPVAVVCTSGTAVANLLPAVIEASYSGVPLIVLTAD 98 (432)
T ss_pred EECCCcccHHHHHHHHhCCCcEEEEecCCccHHHHHHHHHhccCCCEEEEECCcchHhhhhHHHHHhcccCCcEEEEeCC
Confidence 368999 9999999976568999999999999999999999999 9999999999999999999999999999999942
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 99 ~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~dv~~~~~~~~~~~ 178 (432)
T TIGR00173 99 RPPELRGCGANQTIDQPGLFGSYVRWSLDLPLPEADEPLAYLRSTVDRAVAQAQGPPPGPVHINVPFREPLYPDPLLQPL 178 (432)
T ss_pred CCHHHhCCCCCcccchhhHHhhccceeeeCCCCCccccHHHHHHHHHHHHHHhhCCCCCCEEEeCCCCCCCCCCCccccc
Confidence
Q ss_pred -----------------------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc-------
Q 038651 84 -----------------------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM------- 127 (324)
Q Consensus 84 -----------------------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~------- 127 (324)
|++||||+|++|+|+.++ +.+++.+|+|++|+||++|++|||.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~AkrPvi~~G~g~~~~-a~~~l~~lae~~~~PV~tt~~~~~~~~~~~~~ 257 (432)
T TIGR00173 179 QPWLRSGVPTVTTGPPVLDPESLDELWDRLNQAKRGVIVAGPLPPAE-DAEALAALAEALGWPLLADPLSGLRGGPHLVI 257 (432)
T ss_pred ccccccccccccCCCCCCChhhHHHHHHHHhhcCCcEEEEcCCCcHH-HHHHHHHHHHhCCCeEEEeCCCCCCCCCCCCc
Confidence 788999999999999876 8999999999999999999999964
Q ss_pred --------------cccCCcEEEEEcCccCCcccccccccCCCCEEEEcCCccccc
Q 038651 128 --------------IVEFADAYIFVESIFNDYSSVGYSLLLNKKAILMQPDRIVVA 169 (324)
Q Consensus 128 --------------~l~~aDlvl~lG~~~~~~~t~~~~~~~~~~iI~id~d~~~i~ 169 (324)
++ +|||||++|++++++.+..|....+.++||||+|+.+++
T Consensus 258 G~~~~~~~~~~~~~~~-~aDlvl~lG~~~~~~~~~~~~~~~~~~~i~vd~d~~~~~ 312 (432)
T TIGR00173 258 DHYDLLLANPELREEL-QPDLVIRFGGPPVSKRLRQWLARQPAEYWVVDPDPGWLD 312 (432)
T ss_pred CHHHHHhcCCchhhhC-CCCEEEEeCCCcchhHHHHHHhCCCCcEEEECCCCCccC
Confidence 44 899999999999887666552222234999999999987
No 60
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=99.89 E-value=2e-23 Score=179.62 Aligned_cols=77 Identities=27% Similarity=0.221 Sum_probs=72.9
Q ss_pred CcCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh
Q 038651 7 SSSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~ 83 (324)
..+||+ +++|+|++.++++|++|.+|||++|+||||||+|+|| +|||++|+|||.+|+++||++||.|++|||+||+
T Consensus 16 Fg~pG~~~~~l~~al~~~~~i~~v~~rhE~~A~~mAdgyar~sg~~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 94 (162)
T cd07037 16 VISPGSRSAPLALAAAEHPEFRLHVRVDERSAAFFALGLAKASGRPVAVVCTSGTAVANLLPAVVEAYYSGVPLLVLTA 94 (162)
T ss_pred EECCCcchHHHHHHHHhCCCceEEeccChHHHHHHHHHHHHhhCCCEEEEECCchHHHHHhHHHHHHHhcCCCEEEEEC
Confidence 358999 9999999976568999999999999999999999999 9999999999999999999999999999999875
No 61
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=99.87 E-value=1e-22 Score=175.69 Aligned_cols=77 Identities=22% Similarity=0.290 Sum_probs=73.1
Q ss_pred CcCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh
Q 038651 7 SSSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~ 83 (324)
..+||+ +++|+|++.+.++|++|.+|||++|+||||||+|++| +|||++|+|||.+|+++|+++||.|++|||+|++
T Consensus 19 FgipG~~~~~l~~al~~~~~i~~v~~rhE~~A~~mA~gyar~tg~~~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~g 97 (164)
T cd07039 19 YGIPGDSINGLMDALRREGKIEFIQVRHEEAAAFAASAEAKLTGKLGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIAG 97 (164)
T ss_pred EEcCCCchHHHHHHHhhcCCCeEEEeCCHHHHHHHHHHHHHHhCCCEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEec
Confidence 368999 9999999976568999999999999999999999999 9999999999999999999999999999999985
No 62
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=99.86 E-value=2.5e-22 Score=172.94 Aligned_cols=77 Identities=53% Similarity=0.826 Sum_probs=72.9
Q ss_pred CcCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcCceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh
Q 038651 7 SSSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARAVGAYVVTFIVGRLSIINAIAGAYSENFPAATITA 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~ 83 (324)
..+||+ +++|+|++.+.++|++|.+|||++|+||||||+|+|++|||++|+|||.+|+++||++||.|++|||+|++
T Consensus 16 Fg~pG~~~~~l~~al~~~~~i~~i~~rhE~~A~~mA~gyar~t~~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 93 (162)
T cd07038 16 FGVPGDYNLPLLDAIEENPGLRWVGNCNELNAGYAADGYARVKGLGALVTTYGVGELSALNGIAGAYAEHVPVVHIVG 93 (162)
T ss_pred EEeCCccHHHHHHHHhhcCCceEEeeCCHHHHHHHHHHHHHhhCCEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEec
Confidence 358999 99999999765589999999999999999999999999999999999999999999999999999999985
No 63
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=99.81 E-value=1.6e-20 Score=163.02 Aligned_cols=77 Identities=34% Similarity=0.471 Sum_probs=69.5
Q ss_pred CcCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh
Q 038651 7 SSSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~ 83 (324)
..+||+ +.+|+|+|.++++|++|.+|||++|+||||||+|++| ++||++|+|||++|+++||++|+.+++|||+|++
T Consensus 20 fgvpG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~g~ar~~g~~~v~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~g 98 (172)
T PF02776_consen 20 FGVPGSGNLPLLDALEKSPGIRFIPVRHEQGAAFMADGYARATGRPGVVIVTSGPGATNALTGLANAYADRIPVLVITG 98 (172)
T ss_dssp EEE--GGGHHHHHHHHHTTTSEEEE-SSHHHHHHHHHHHHHHHSSEEEEEEETTHHHHTTHHHHHHHHHTT-EEEEEEE
T ss_pred EEEeChhHhHHHHHhhhhcceeeecccCcchhHHHHHHHHHhhccceEEEeecccchHHHHHHHhhcccceeeEEEEec
Confidence 357999 9999999998668999999999999999999999999 9999999999999999999999999999999975
No 64
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=99.79 E-value=5e-18 Score=163.36 Aligned_cols=269 Identities=17% Similarity=0.113 Sum_probs=162.9
Q ss_pred CcCCCC-chHHHHhhhc-CCCCeEeecCchHHHHHHHHHHhhhcC-ceEEE-EeCCcc-hHHHHHHHHHHhhcCCcchhh
Q 038651 7 SSSPAD-SSSLLDHLIA-EPGSRDVGCCNELNAGYAADGSARARA-VGAYV-VTFIVG-RLSIINAIAGAYSENFPAATI 81 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~-~~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~-~t~GpG-~~N~~tgla~A~~d~~Pvl~I 81 (324)
+++|.+ ..+|++.+.+ .+++++|.+.||..|..+|.||+..|| .+|++ =.||.| +.|.++.|++...-++|+|+|
T Consensus 6 ~gvP~s~l~~~~~~~~~~~~~~~~i~~~~E~~av~iaaG~~latG~~~~v~mQnSGlGn~vN~l~SL~~~~~y~iP~l~~ 85 (361)
T TIGR03297 6 SGVPDSLLKPFCNYITDNNRDLRHVIAANEGAAVGLAAGAYLATGKRAAVYMQNSGLGNAVNPLTSLADTEVYDIPLLLI 85 (361)
T ss_pred EeCcHHHHHHHHHHHHhcCCCceEEecCCchHHHHHHHHHHHhcCCccEEEEecCchhhhhhHHHhhccccccCcCeeEE
Confidence 468999 9999999984 457999999999999999999999988 66665 689999 777777788789999999998
Q ss_pred hhhhcCCCcEEEECCC--CCccchHHHHHHHHHHhCCcEEecCC-CCCc-----------cccCCcEEEEEcCccC-Ccc
Q 038651 82 TALLKAVKPAMIGGPK--LSVSKATIAFVELADACGYAFAVMPS-AKGM-----------IVEFADAYIFVESIFN-DYS 146 (324)
Q Consensus 82 t~L~~AkrPvIl~G~g--~~~~~a~~~l~~lae~l~~Pv~tt~~-gkg~-----------~l~~aDlvl~lG~~~~-~~~ 146 (324)
.+.+.-. |.. ....-..+....+.|.++||...=.. .... .-++.=+.|++.-++- .+.
T Consensus 86 i~~RG~~------g~~depqh~~~G~~t~~lL~~~~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~p~a~l~~~~~~~~~~ 159 (361)
T TIGR03297 86 VGWRGEP------GVHDEPQHVKQGRITLSLLDALEIPWEVLSTDNDEALAQIERALAHALATSRPYALVVRKGTFASYK 159 (361)
T ss_pred EecCCCC------CCCCCchhhHHhHHHHHHHHHcCCCEEECCCChHHHHHHHHHHHHHHHHHCCCEEEEEccccccccc
Confidence 6533220 100 00001123445566666666654321 1111 1112233444443321 110
Q ss_pred ccc-----cc-------------ccCCCC-EEEEcCCccccccCCChhhHHHHHHHhhhhccCCCCCCCCCCCCCCE---
Q 038651 147 SVG-----YS-------------LLLNKK-AILMQPDRIVVANGLLLPNRNTSAYESYHRIYVPHGIPLKSNAHEPL--- 204 (324)
Q Consensus 147 t~~-----~~-------------~~~~~~-iI~id~d~~~i~~~~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~l--- 204 (324)
... +. ...+.. +|-.| .| ... ..+...+.+.-...... ... ...+
T Consensus 160 ~~~~~~~~~~~~~~r~~ai~~i~~~l~~~~iVV~~-----~G-~~s-----~el~~~~~~~~~~~~~~-f~~-~GsMG~a 226 (361)
T TIGR03297 160 LKGEPANPLPTLMTREEAIAAILDHLPDNTVIVST-----TG-KTS-----RELYELRDRIGQGHARD-FLT-VGSMGHA 226 (361)
T ss_pred cccCCCCCCcCCCCHHHHHHHHHHhCCCCCEEEEC-----CC-CCc-----HHHHHhhcccccCCCCc-eEe-echhhhH
Confidence 000 00 001111 22222 11 000 00110000000000000 000 0111
Q ss_pred --------EecCCCeEEEecCchHHhhhHHHHHHHHHHhCC-CeEEEEEeCCchhhhhhhhCCCCCCCCCCCHHHHHHHH
Q 038651 205 --------MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQ-KNIIFLINNGNYTIEVEIHDGPYNVIENWNYTGLVEAF 275 (324)
Q Consensus 205 --------~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~l-pviivV~NN~~yg~~~~~~~~~~~~l~~~df~~lA~a~ 275 (324)
...|+..|++..||++|.|.. +||.|+++|++ |+++||+||++|++.... ...-.++||.++|++|
T Consensus 227 ~p~AlG~ala~p~r~Vv~i~GDGsflm~~-~eL~t~~~~~~~nli~VVlNNg~~~~~g~q----~~~~~~~d~~~iA~a~ 301 (361)
T TIGR03297 227 SQIALGLALARPDQRVVCLDGDGAALMHM-GGLATIGTQGPANLIHVLFNNGAHDSVGGQ----PTVSQHLDFAQIAKAC 301 (361)
T ss_pred HHHHHHHHHHCCCCCEEEEEChHHHHHHH-HHHHHHHHhCCCCeEEEEEcCccccccCCc----CCCCCCCCHHHHHHHC
Confidence 455788899999999999974 99999999996 899999999999875421 1112469999999999
Q ss_pred HH--------------HHHHhHHhCCCCeEEEEEEecCCC
Q 038651 276 QN--------------AIETAAVEKKDCLCFIEAIVHKDD 301 (324)
Q Consensus 276 G~--------------al~~a~~~~~~~p~lIeV~id~~~ 301 (324)
|. +|+++. +.++|+||||++++..
T Consensus 302 G~~~~~~v~~~~eL~~al~~a~--~~~gp~lIeV~v~~g~ 339 (361)
T TIGR03297 302 GYAKVYEVSTLEELETALTAAS--SANGPRLIEVKVRPGS 339 (361)
T ss_pred CCceEEEeCCHHHHHHHHHHHH--hCCCcEEEEEEecCCC
Confidence 95 666664 6789999999999854
No 65
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=99.78 E-value=3.4e-19 Score=157.99 Aligned_cols=100 Identities=15% Similarity=0.186 Sum_probs=83.5
Q ss_pred EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhhC----CCC--CCCCCCCHHHHHHHHHH-
Q 038651 205 MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIHD----GPY--NVIENWNYTGLVEAFQN- 277 (324)
Q Consensus 205 ~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~----~~~--~~l~~~df~~lA~a~G~- 277 (324)
+..|+..||+.+||++|.|. .|||+||+||++|+++||+||++|++++..|. ..+ .++++|||+++|++||+
T Consensus 67 la~p~r~vv~i~GDG~f~m~-~~eL~Ta~~~~lpvi~vV~NN~~yg~~~~~q~~~~~~~~~~~~~~~~d~~~lA~a~G~~ 145 (196)
T cd02013 67 AAAPDRPVVAIAGDGAWGMS-MMEIMTAVRHKLPVTAVVFRNRQWGAEKKNQVDFYNNRFVGTELESESFAKIAEACGAK 145 (196)
T ss_pred HhCCCCcEEEEEcchHHhcc-HHHHHHHHHhCCCeEEEEEECchhHHHHHHHHHHcCCCcccccCCCCCHHHHHHHCCCE
Confidence 44578889999999999997 49999999999999999999999999986552 222 46678999999999998
Q ss_pred ------------HHHHhHHhC---CCCeEEEEEEecCCCCcHHHH
Q 038651 278 ------------AIETAAVEK---KDCLCFIEAIVHKDDTGKELL 307 (324)
Q Consensus 278 ------------al~~a~~~~---~~~p~lIeV~id~~~~~~~~~ 307 (324)
+|++++ + .++|+||||++|+++.++...
T Consensus 146 ~~~v~~~~el~~al~~a~--~~~~~~~p~liev~v~~~~~~~~~~ 188 (196)
T cd02013 146 GITVDKPEDVGPALQKAI--AMMAEGKTTVIEIVCDQELGDPFRR 188 (196)
T ss_pred EEEECCHHHHHHHHHHHH--hcCCCCCeEEEEEEeCcccCCchHH
Confidence 777764 5 789999999999987654443
No 66
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=99.77 E-value=6.7e-19 Score=156.81 Aligned_cols=97 Identities=16% Similarity=0.119 Sum_probs=80.0
Q ss_pred EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhhC----CCC-----CC-------CCCCCH
Q 038651 205 MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIHD----GPY-----NV-------IENWNY 268 (324)
Q Consensus 205 ~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~----~~~-----~~-------l~~~df 268 (324)
+..|+..||+.+||++|.|+. |||+|++||++|+++||+||++|+++++.|. ..+ .. .++|||
T Consensus 71 la~p~~~vv~i~GDG~f~m~~-~eL~Ta~~~~lpviivV~NN~~yg~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 149 (202)
T cd02006 71 AADPDRQVVALSGDYDFQFMI-EELAVGAQHRIPYIHVLVNNAYLGLIRQAQRAFDMDYQVNLAFENINSSELGGYGVDH 149 (202)
T ss_pred hhCCCCeEEEEEeChHhhccH-HHHHHHHHhCCCeEEEEEeCchHHHHHHHHHHhcCccccccccccccccccCCCCCCH
Confidence 456788999999999999985 9999999999999999999999999886652 111 11 136999
Q ss_pred HHHHHHHHH-------------HHHHhHHh---CCCCeEEEEEEecCCCCc
Q 038651 269 TGLVEAFQN-------------AIETAAVE---KKDCLCFIEAIVHKDDTG 303 (324)
Q Consensus 269 ~~lA~a~G~-------------al~~a~~~---~~~~p~lIeV~id~~~~~ 303 (324)
+++|++||+ +|++|+ . +.++|+||||++++++.+
T Consensus 150 ~~lA~a~G~~~~~v~~~~el~~al~~a~-~~~~~~~~p~liev~i~~~~~~ 199 (202)
T cd02006 150 VKVAEGLGCKAIRVTKPEELAAAFEQAK-KLMAEHRVPVVVEAILERVTNI 199 (202)
T ss_pred HHHHHHCCCEEEEECCHHHHHHHHHHHH-HhcccCCCcEEEEEEecccccC
Confidence 999999998 677764 2 268999999999998764
No 67
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=99.77 E-value=2.9e-17 Score=161.31 Aligned_cols=302 Identities=15% Similarity=0.116 Sum_probs=204.4
Q ss_pred CcCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh-
Q 038651 7 SSSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA- 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~- 83 (324)
...||+ +.||-=++.+.++|+...--.|.+|+|.|-|-||.++ +-++++|||-.+.|+..+|.+|...++|+||+|+
T Consensus 27 vicPGSRSTPLala~~~~~~i~~hv~~DERsagFfALGlAKas~rPVavi~TSGTA~ANl~PAViEA~~srvpLIVLTAD 106 (566)
T COG1165 27 VICPGSRSTPLALAAAAHDAITVHVHIDERSAGFFALGLAKASKRPVAVICTSGTAVANLYPAVIEANLSRVPLIVLTAD 106 (566)
T ss_pred EECCCCCCcHHHHHHHhcCCeEEEEecccchHHHHHHhhhhhcCCCEEEEEcCcchhhhccHHHHhhhhcCCceEEEeCC
Confidence 468999 9999999988778999999999999999999999998 8888899999999999999999999999999963
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 107 RP~EL~~~GAnQaI~Q~~lfgs~v~~~~~L~~P~~~~~~~~~~~~~~~~~~~~a~~~~~GpVHiN~PfrePL~p~~~~~~ 186 (566)
T COG1165 107 RPPELRGCGANQAIDQTGLFGSYVRASIDLPLPEDDIEALWYLRTIASAAAQQARTPHAGPVHINVPFREPLVPDLEPEG 186 (566)
T ss_pred CCHHHhcCCCchhhhhhhhhcccchhhccCCCCCCCHHHHHHHHHHHHHHHHhccCCCCCceEecCCCCccCCCCCCccc
Confidence
Q ss_pred --------------------hh------------cCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCC---CCc-
Q 038651 84 --------------------LL------------KAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSA---KGM- 127 (324)
Q Consensus 84 --------------------L~------------~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~g---kg~- 127 (324)
.. .+||.+|++|.-.. +..+++.++++.+|.|+++.+.. ..+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rgviv~G~~~~--~e~~~i~~~a~~lg~PilaDplS~lr~~i~ 264 (566)
T COG1165 187 AGTPWGRPLGHWWFYTGPWTVDQGPDLLSEWFFWRQKRGVIVAGRMSA--QEGKGILALANTLGWPILADPLSPLRNYIP 264 (566)
T ss_pred cccccccccCchhhcCCceeeecccccccchhhhcccCceEEEecCch--hhhHHHHHHHHHhCCceecccccccCCCcc
Confidence 11 35999999998764 45667999999999999986543 322
Q ss_pred -------------cccCCcEEEEEcCccCCcccccccccCC-CCEEEEcCCccccccCCChh--------hHHH------
Q 038651 128 -------------IVEFADAYIFVESIFNDYSSVGYSLLLN-KKAILMQPDRIVVANGLLLP--------NRNT------ 179 (324)
Q Consensus 128 -------------~l~~aDlvl~lG~~~~~~~t~~~~~~~~-~~iI~id~d~~~i~~~~~~~--------d~l~------ 179 (324)
.+. .|.||-+|..+.......|-.... ...+.||.....++..+.-. ++++
T Consensus 265 ~yD~~L~~~~~~~~L~-~d~VI~fG~~~~SK~l~qwl~~~~~~~~~vvd~~~~~~Dp~~~~~~~~~~~v~~~~~~~~~~~ 343 (566)
T COG1165 265 CYDLWLANPKAAEKLR-PDIVIQFGSPPTSKRLLQWLADTEPIEYWVVDPGGGWLDPSHHATTRLSADVATWARSIHPAG 343 (566)
T ss_pred cchhhhcCchhhhhcC-ccEEEEeCCCcccHHHHHHHhccCCCcEEEEcCCCCcCCcccccceEEEeehhHhHHHhcccc
Confidence 222 399999999886544434433222 22555655544332100000 1110
Q ss_pred ----HHHHhhhh------------cc----------------CCCCCC--------------CCCCCCC----------C
Q 038651 180 ----SAYESYHR------------IY----------------VPHGIP--------------LKSNAHE----------P 203 (324)
Q Consensus 180 ----~~~~~~~~------------~~----------------~~~~~~--------------~~~~~~~----------~ 203 (324)
..+++|.. .. -+.... ....+.+ .
T Consensus 344 ~~~~~Wl~~~~~~~~~~~~~v~~~~~~~~~~e~~~a~~l~~~lp~~~~LFvgNSmpVRdvd~~~~~~~~~~v~sNRGA~G 423 (566)
T COG1165 344 RIRKPWLDEWLALNEKARQAVRDQLAAEALTEAHLAAALADLLPPQDQLFVGNSMPVRDVDALGQLPAGYRVYSNRGASG 423 (566)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHhcccCchhhHHHHHHHHhCCCCCeEEEecCchhhhHHHhccCccCceeecCCCccc
Confidence 01111100 00 000000 0000000 0
Q ss_pred E----------EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhh---CC-----CCCCCCC
Q 038651 204 L----------MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIH---DG-----PYNVIEN 265 (324)
Q Consensus 204 l----------~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~---~~-----~~~~l~~ 265 (324)
| ...-...+|.-+||-+|-- .+.-|.-..++..|.+|||+||+|=||-..+. .. .|.-=..
T Consensus 424 IDG~vSTA~Gi~~a~~~ptv~liGDLS~lh-D~NgLl~~k~~~~~ltIvv~NNnGGgIF~~Lp~~~~~~~fe~~F~tPh~ 502 (566)
T COG1165 424 IDGTVSTALGIARATQKPTVALIGDLSFLH-DLNGLLLLKKVPQPLTIVVVNNNGGGIFSLLPQAQSEPVFERLFGTPHG 502 (566)
T ss_pred cchhHHHHhhhhhhcCCceEEEEechhhhh-ccchHhhcCCCCCCeEEEEEeCCCceeeeeccCCCCcchHHHhcCCCCC
Confidence 1 1223444677788877632 23556678899999999999999988755442 11 1222246
Q ss_pred CCHHHHHHHHHH-------------HHHHhHHhCCCCeEEEEEEecCCCCcHHHHHHHHHhh
Q 038651 266 WNYTGLVEAFQN-------------AIETAAVEKKDCLCFIEAIVHKDDTGKELLKWGSRVS 314 (324)
Q Consensus 266 ~df~~lA~a~G~-------------al~~a~~~~~~~p~lIeV~id~~~~~~~~~~~~~~~~ 314 (324)
.||..+|+.||. +++.+. ...+-.||||.+|+++.....+.+.+.+.
T Consensus 503 ldF~~la~~y~l~y~~~~s~~~l~~~~~~~~--~~~g~~viEvkt~r~~~~~~~q~l~~~~~ 562 (566)
T COG1165 503 LDFAHLAATYGLEYHRPQSWDELGEALDQAW--RRSGTTVIEVKTDRSDGAQLHQALLAQVS 562 (566)
T ss_pred CCHHHHHHHhCccccccCcHHHHHHHHhhhc--cCCCcEEEEEecChhHHHHHHHHHHHHHh
Confidence 899999999998 444442 46789999999999998888888777665
No 68
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=99.76 E-value=2.2e-18 Score=150.52 Aligned_cols=96 Identities=18% Similarity=0.227 Sum_probs=82.2
Q ss_pred EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhh---C--CCCCCCCCCCHHHHHHHHHH--
Q 038651 205 MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIH---D--GPYNVIENWNYTGLVEAFQN-- 277 (324)
Q Consensus 205 ~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~---~--~~~~~l~~~df~~lA~a~G~-- 277 (324)
...|+..|++.+||++|.|+. |||+|++||++|+++||+||++|++++..| . ..+.++.++||.++|++||+
T Consensus 62 la~~~~~vv~i~GDG~f~m~~-~eL~ta~~~~l~vi~vV~NN~~~g~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~ 140 (177)
T cd02010 62 LVYPDRKVVAVSGDGGFMMNS-QELETAVRLKIPLVVLIWNDNGYGLIKWKQEKEYGRDSGVDFGNPDFVKYAESFGAKG 140 (177)
T ss_pred HhCCCCcEEEEEcchHHHhHH-HHHHHHHHHCCCeEEEEEECCcchHHHHHHHHhcCCcccCcCCCCCHHHHHHHCCCEE
Confidence 445788899999999999885 999999999999999999999999987654 1 23456678999999999998
Q ss_pred -----------HHHHhHHhCCCCeEEEEEEecCCCCc
Q 038651 278 -----------AIETAAVEKKDCLCFIEAIVHKDDTG 303 (324)
Q Consensus 278 -----------al~~a~~~~~~~p~lIeV~id~~~~~ 303 (324)
+|++++ +.++|+||||.+++++.+
T Consensus 141 ~~v~~~~el~~al~~a~--~~~~p~liev~~~~~~~~ 175 (177)
T cd02010 141 YRIESADDLLPVLERAL--AADGVHVIDCPVDYSENI 175 (177)
T ss_pred EEECCHHHHHHHHHHHH--hCCCCEEEEEEecccccC
Confidence 777775 789999999999986654
No 69
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=99.74 E-value=1.8e-18 Score=148.06 Aligned_cols=76 Identities=26% Similarity=0.202 Sum_probs=70.5
Q ss_pred CcCCCC-chHHHHhhhc----CCCCeEeecCchHHHHHHHHHHhhhcCceEEEEeCCcchHHHHHHHHHHhhcCCcchhh
Q 038651 7 SSSPAD-SSSLLDHLIA----EPGSRDVGCCNELNAGYAADGSARARAVGAYVVTFIVGRLSIINAIAGAYSENFPAATI 81 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~----~~~i~~i~~rhE~~A~~aAdgYaR~tg~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~I 81 (324)
..+||+ +++|+|++.+ ..+|++|.+|||++|++|||||+|.++. ||++|+|||++|++++|++|+.+++|||+|
T Consensus 18 fg~PG~~~~~~~~~l~~~~~~~~~i~~i~~~~E~~A~~~A~g~~r~~~~-v~~~~~gpG~~n~~~~l~~a~~~~~P~v~i 96 (160)
T cd07034 18 AAYPITPSTEIAETLAKAVLGELGGVVVQAESEHAAAEAAIGASAAGAR-AMTATSGPGLNLMAEALYLAAGAELPLVIV 96 (160)
T ss_pred EEeCCCCHHHHHHHHHHHhccCCCcEEEEeCCHHHHHHHHHHHHhhCCc-EEEeeCcchHHHHHHHHHHHHhCCCCEEEE
Confidence 468999 9999999964 4589999999999999999999998778 999999999999999999999999999999
Q ss_pred hh
Q 038651 82 TA 83 (324)
Q Consensus 82 t~ 83 (324)
++
T Consensus 97 ~g 98 (160)
T cd07034 97 VA 98 (160)
T ss_pred Ee
Confidence 75
No 70
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=99.73 E-value=5.4e-18 Score=144.32 Aligned_cols=76 Identities=33% Similarity=0.349 Sum_probs=72.3
Q ss_pred CcCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh
Q 038651 7 SSSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~ 83 (324)
..+||+ +++|++++.+ +++++|.++||.+|++||+||+|.+| ++||++|+|||.+|++++|++|+.+++|||+|++
T Consensus 16 fg~pg~~~~~l~~~~~~-~~~~~i~~~~E~~A~~~A~g~~~~~~~~~v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~ 93 (155)
T cd07035 16 FGVPGGAILPLLDALAR-SGIRYILVRHEQGAVGMADGYARATGKPGVVLVTSGPGLTNAVTGLANAYLDSIPLLVITG 93 (155)
T ss_pred EECCCCchHHHHHHhcc-CCCEEEEeCCHHHHHHHHHHHHHHHCCCEEEEEcCCCcHHHHHHHHHHHHhhCCCEEEEeC
Confidence 468999 9999999984 68999999999999999999999999 9999999999999999999999999999999975
No 71
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=99.73 E-value=3.9e-18 Score=142.49 Aligned_cols=86 Identities=28% Similarity=0.435 Sum_probs=75.4
Q ss_pred hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc----------------------cccCCcEEEEEcCc
Q 038651 84 LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM----------------------IVEFADAYIFVESI 141 (324)
Q Consensus 84 L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~----------------------~l~~aDlvl~lG~~ 141 (324)
|++||||+|++|.|+.++++.+++++|+|++|+||++|+++||+ ++++||+||++|++
T Consensus 8 L~~A~rP~il~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~kg~i~~~hp~~~G~~g~~~~~~~~~~l~~aDlvl~iG~~ 87 (137)
T PF00205_consen 8 LSSAKRPVILAGRGARRSGAAEELRELAEKLGIPVATTPMGKGVIPEDHPLFLGYLGLFGSPAANEALEQADLVLAIGTR 87 (137)
T ss_dssp HHH-SSEEEEE-HHHHHTTCHHHHHHHHHHHTSEEEEEGGGTTSSTTTSTTEEEESCGGSCHHHHHHHHHSSEEEEESSS
T ss_pred HHhCCCEEEEEcCCcChhhHHHHHHHHHHHHCCCEEecCccccccCCCCchhcccCCccCCHHHHHHhcCCCEEEEECCC
Confidence 78999999999999999999999999999999999999999998 77999999999999
Q ss_pred cCCcccccccc-cCCC-CEEEEcCCccccc
Q 038651 142 FNDYSSVGYSL-LLNK-KAILMQPDRIVVA 169 (324)
Q Consensus 142 ~~~~~t~~~~~-~~~~-~iI~id~d~~~i~ 169 (324)
++++.+.++.. +.+. ++||||.|+.+++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~I~I~~d~~~~~ 117 (137)
T PF00205_consen 88 LSDFNTYGFSPAFNPDAKIIQIDPDPAEIG 117 (137)
T ss_dssp SSTTTTTTTTGCSTTTSEEEEEESSGGGTT
T ss_pred CccccccccccccCCCCEEEEEECCHHHhC
Confidence 99977765433 3334 4999999999998
No 72
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=99.72 E-value=1.2e-17 Score=146.64 Aligned_cols=99 Identities=44% Similarity=0.650 Sum_probs=84.5
Q ss_pred EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhhC--CCCCCCCCCCHHHHHHHHH----H-
Q 038651 205 MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIHD--GPYNVIENWNYTGLVEAFQ----N- 277 (324)
Q Consensus 205 ~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~--~~~~~l~~~df~~lA~a~G----~- 277 (324)
...|+..+++-+||++|.+. .|||+|++||++|+++||+||++|++++..+. ..+.++.++||.++|++|| +
T Consensus 64 la~~~~~vv~i~GDG~f~~~-~~el~ta~~~~~p~~ivV~nN~~~~~~~~~~~~~~~~~~~~~~d~~~ia~a~G~~~~~~ 142 (183)
T cd02005 64 LAAPDRRVILLVGDGSFQMT-VQELSTMIRYGLNPIIFLINNDGYTIERAIHGPEASYNDIANWNYTKLPEVFGGGGGGL 142 (183)
T ss_pred HhCCCCeEEEEECCchhhcc-HHHHHHHHHhCCCCEEEEEECCCcEEEEEeccCCcCcccCCCCCHHHHHHHhCCCcccc
Confidence 34567889999999999886 59999999999999999999999999887653 3466777799999999999 5
Q ss_pred ------------HHHHhHHhC-CCCeEEEEEEecCCCCcHHH
Q 038651 278 ------------AIETAAVEK-KDCLCFIEAIVHKDDTGKEL 306 (324)
Q Consensus 278 ------------al~~a~~~~-~~~p~lIeV~id~~~~~~~~ 306 (324)
+|++++ + .++|+||||.+++++.|+.|
T Consensus 143 ~~~v~~~~el~~al~~a~--~~~~~p~liev~~~~~~~~~~~ 182 (183)
T cd02005 143 SFRVKTEGELDEALKDAL--FNRDKLSLIEVILPKDDAPEAL 182 (183)
T ss_pred EEEecCHHHHHHHHHHHH--hcCCCcEEEEEEcCcccCCccc
Confidence 777764 5 78999999999999888754
No 73
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=99.72 E-value=9.4e-18 Score=149.82 Aligned_cols=101 Identities=14% Similarity=0.185 Sum_probs=83.2
Q ss_pred EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhhC----CCC---------------CCCCC
Q 038651 205 MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIHD----GPY---------------NVIEN 265 (324)
Q Consensus 205 ~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~----~~~---------------~~l~~ 265 (324)
...|+..||+.+||++|.|.. |||+||+||++|+++||+||++|++++..|. ..+ .++++
T Consensus 62 la~p~~~vv~i~GDGsf~m~~-~eL~Ta~~~~lpv~ivV~NN~~~g~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (205)
T cd02003 62 LAKPDREVYVLVGDGSYLMLH-SEIVTAVQEGLKIIIVLFDNHGFGCINNLQESTGSGSFGTEFRDRDQESGQLDGALLP 140 (205)
T ss_pred HhCCCCeEEEEEccchhhccH-HHHHHHHHcCCCCEEEEEECCccHHHHHHHHHhcCccccchhcccccccccccCCCCC
Confidence 445788899999999999974 9999999999999999999999999986651 111 12457
Q ss_pred CCHHHHHHHHHH-------------HHHHhHHhCCCCeEEEEEEecCCCCcHHHHH
Q 038651 266 WNYTGLVEAFQN-------------AIETAAVEKKDCLCFIEAIVHKDDTGKELLK 308 (324)
Q Consensus 266 ~df~~lA~a~G~-------------al~~a~~~~~~~p~lIeV~id~~~~~~~~~~ 308 (324)
+||.++|++||+ +|++++ +.++|+||||++++++.++....
T Consensus 141 ~d~~~~A~a~G~~~~~v~~~~el~~al~~a~--~~~gp~lIeV~v~~~~~~~~~~~ 194 (205)
T cd02003 141 VDFAANARSLGARVEKVKTIEELKAALAKAK--ASDRTTVIVIKTDPKSMTPGYGS 194 (205)
T ss_pred CCHHHHHHhCCCEEEEECCHHHHHHHHHHHH--hCCCCEEEEEEeeccccCCCCCC
Confidence 999999999998 777774 68999999999999877665444
No 74
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=99.70 E-value=3.9e-17 Score=143.57 Aligned_cols=97 Identities=21% Similarity=0.323 Sum_probs=80.2
Q ss_pred EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhh----CCCC--CC-CCCCCHHHHHHHHHH
Q 038651 205 MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIH----DGPY--NV-IENWNYTGLVEAFQN 277 (324)
Q Consensus 205 ~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~----~~~~--~~-l~~~df~~lA~a~G~ 277 (324)
...|+..|++.+||++|.+. .|||+|++||++|+++||+||++|++++..| ...+ .+ .+++||+++|++||+
T Consensus 64 la~~~~~vv~i~GDG~f~~~-~~eL~ta~~~~lpi~ivV~nN~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~ 142 (186)
T cd02015 64 VARPDKTVICIDGDGSFQMN-IQELATAAQYNLPVKIVILNNGSLGMVRQWQELFYEGRYSHTTLDSNPDFVKLAEAYGI 142 (186)
T ss_pred HhCCCCeEEEEEcccHHhcc-HHHHHHHHHhCCCeEEEEEECCccHHHHHHHHHHcCCceeeccCCCCCCHHHHHHHCCC
Confidence 34567889999999999987 4999999999999999999999999988764 2222 22 357999999999998
Q ss_pred -------------HHHHhHHhCCCCeEEEEEEecCCCCcH
Q 038651 278 -------------AIETAAVEKKDCLCFIEAIVHKDDTGK 304 (324)
Q Consensus 278 -------------al~~a~~~~~~~p~lIeV~id~~~~~~ 304 (324)
+|++++ +.++|+||||++++++.++
T Consensus 143 ~~~~v~~~~el~~al~~a~--~~~~p~liev~~~~~~~~~ 180 (186)
T cd02015 143 KGLRVEKPEELEAALKEAL--ASDGPVLLDVLVDPEENVL 180 (186)
T ss_pred ceEEeCCHHHHHHHHHHHH--hCCCCEEEEEEeCCCcccC
Confidence 666664 6789999999999876543
No 75
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=99.68 E-value=1.3e-16 Score=139.22 Aligned_cols=96 Identities=19% Similarity=0.199 Sum_probs=81.0
Q ss_pred EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhh---CC-C-CCCCCCCCHHHHHHHHHH--
Q 038651 205 MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIH---DG-P-YNVIENWNYTGLVEAFQN-- 277 (324)
Q Consensus 205 ~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~---~~-~-~~~l~~~df~~lA~a~G~-- 277 (324)
+..++..+++..||++|.+. .|||+|+++|++|+++||+||++|++++..+ .. . .++++++||.++|++||+
T Consensus 65 ~a~~~~~vv~i~GDG~f~~~-~~el~t~~~~~lp~~~iv~NN~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~~~ 143 (178)
T cd02014 65 LAYPDRQVIALSGDGGFAML-MGDLITAVKYNLPVIVVVFNNSDLGFIKWEQEVMGQPEFGVDLPNPDFAKIAEAMGIKG 143 (178)
T ss_pred HhCCCCcEEEEEcchHHHhh-HHHHHHHHHhCCCcEEEEEECCchhHHHHHHHHhcCCceeccCCCCCHHHHHHHCCCeE
Confidence 44567889999999999988 5999999999999999999999999987554 22 2 246678999999999998
Q ss_pred -----------HHHHhHHhCCCCeEEEEEEecCCCCc
Q 038651 278 -----------AIETAAVEKKDCLCFIEAIVHKDDTG 303 (324)
Q Consensus 278 -----------al~~a~~~~~~~p~lIeV~id~~~~~ 303 (324)
+|++++ +.++|+||||.+++++.|
T Consensus 144 ~~v~~~~el~~~l~~a~--~~~~p~liev~~~~~~~~ 178 (178)
T cd02014 144 IRVEDPDELEAALDEAL--AADGPVVIDVVTDPNEPP 178 (178)
T ss_pred EEeCCHHHHHHHHHHHH--hCCCCEEEEEEeCCCCCC
Confidence 677764 678999999999998765
No 76
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=99.68 E-value=5.1e-17 Score=141.54 Aligned_cols=87 Identities=20% Similarity=0.187 Sum_probs=73.4
Q ss_pred CCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhhC----CCCC-CC---CCCCHHHHHHHHHH---
Q 038651 209 NTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIHD----GPYN-VI---ENWNYTGLVEAFQN--- 277 (324)
Q Consensus 209 ~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~----~~~~-~l---~~~df~~lA~a~G~--- 277 (324)
+..||+.+||++|.|. .|||+|++||++|+++||+||++|++++..+. ..|. .+ .+|||.++|++||+
T Consensus 68 ~~~Vv~i~GDGsf~m~-~~eL~ta~~~~l~v~ivVlNN~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~lA~a~G~~~~ 146 (175)
T cd02009 68 DKPTVLLTGDLSFLHD-LNGLLLGKQEPLNLTIVVINNNGGGIFSLLPQASFEDEFERLFGTPQGLDFEHLAKAYGLEYR 146 (175)
T ss_pred CCCEEEEEehHHHHHh-HHHHHhccccCCCeEEEEEECCCCchheeccCCcccchhhhhhcCCCCCCHHHHHHHcCCCee
Confidence 7789999999999998 49999999999999999999999998876542 2221 12 37999999999998
Q ss_pred ----------HHHHhHHhCCCCeEEEEEEec
Q 038651 278 ----------AIETAAVEKKDCLCFIEAIVH 298 (324)
Q Consensus 278 ----------al~~a~~~~~~~p~lIeV~id 298 (324)
+|++++ +.++|+||||.+|
T Consensus 147 ~v~~~~el~~al~~a~--~~~~p~lIev~v~ 175 (175)
T cd02009 147 RVSSLDELEQALESAL--AQDGPHVIEVKTD 175 (175)
T ss_pred eCCCHHHHHHHHHHHH--hCCCCEEEEEeCC
Confidence 777775 6899999999986
No 77
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=99.66 E-value=2.3e-16 Score=136.82 Aligned_cols=91 Identities=19% Similarity=0.290 Sum_probs=77.0
Q ss_pred EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhhCC-------CCCCCCCCCHHHHHHHHHH
Q 038651 205 MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIHDG-------PYNVIENWNYTGLVEAFQN 277 (324)
Q Consensus 205 ~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~~-------~~~~l~~~df~~lA~a~G~ 277 (324)
...|+..|++.+||++|.+.. |||+|++||++|+++||+||++|++++..|.. .+.++.++||.++|++||+
T Consensus 62 la~~~~~vv~i~GDG~f~~~~-~el~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~la~a~G~ 140 (172)
T cd02004 62 LARPDKRVVLVEGDGAFGFSG-MELETAVRYNLPIVVVVGNNGGWYQGLDGQQLSYGLGLPVTTLLPDTRYDLVAEAFGG 140 (172)
T ss_pred HhCCCCeEEEEEcchhhcCCH-HHHHHHHHcCCCEEEEEEECcccccchhhhhhhccCCCceeccCCCCCHHHHHHHCCC
Confidence 445788899999999999874 99999999999999999999999998876532 1245678999999999998
Q ss_pred -------------HHHHhHHhCCCCeEEEEEEec
Q 038651 278 -------------AIETAAVEKKDCLCFIEAIVH 298 (324)
Q Consensus 278 -------------al~~a~~~~~~~p~lIeV~id 298 (324)
+|++++ +.++|+||||++|
T Consensus 141 ~~~~v~~~~el~~al~~a~--~~~~p~liev~i~ 172 (172)
T cd02004 141 KGELVTTPEELKPALKRAL--ASGKPALINVIID 172 (172)
T ss_pred eEEEECCHHHHHHHHHHHH--HcCCCEEEEEEcC
Confidence 666664 6789999999985
No 78
>PRK06163 hypothetical protein; Provisional
Probab=99.66 E-value=2e-16 Score=140.79 Aligned_cols=92 Identities=17% Similarity=0.183 Sum_probs=76.8
Q ss_pred EecCCCeEEEecCchHHhhhHHHHHHHHHHh-CCCeEEEEEeCCchhhhhhhhCCCCCCCCCCCHHHHHHHHHH------
Q 038651 205 MLSGNTAVIAETGDSWFNCQKDVDVSTMLRC-EQKNIIFLINNGNYTIEVEIHDGPYNVIENWNYTGLVEAFQN------ 277 (324)
Q Consensus 205 ~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~-~lpviivV~NN~~yg~~~~~~~~~~~~l~~~df~~lA~a~G~------ 277 (324)
+..|+..||+.+||++|.|.. |||+|+++| ++|+++||+||++|++++. ..+....+|||.++|++||+
T Consensus 71 lA~p~r~Vv~i~GDG~f~m~~-~eL~Ta~~~~~lpi~ivV~NN~~yg~~~~---~~~~~~~~~Df~~lA~a~G~~~~~~v 146 (202)
T PRK06163 71 LAQPKRRVIALEGDGSLLMQL-GALGTIAALAPKNLTIIVMDNGVYQITGG---QPTLTSQTVDVVAIARGAGLENSHWA 146 (202)
T ss_pred HhCCCCeEEEEEcchHHHHHH-HHHHHHHHhcCCCeEEEEEcCCchhhcCC---ccCCCCCCCCHHHHHHHCCCceEEEe
Confidence 345788899999999999985 999999988 6899999999999998643 22334467999999999998
Q ss_pred --------HHHHhHHhCCCCeEEEEEEecCCCC
Q 038651 278 --------AIETAAVEKKDCLCFIEAIVHKDDT 302 (324)
Q Consensus 278 --------al~~a~~~~~~~p~lIeV~id~~~~ 302 (324)
+|++++ +.++|+||||++++...
T Consensus 147 ~~~~el~~al~~a~--~~~~p~lIeV~i~~~~~ 177 (202)
T PRK06163 147 ADEAHFEALVDQAL--SGPGPSFIAVRIDDKPG 177 (202)
T ss_pred CCHHHHHHHHHHHH--hCCCCEEEEEEecCCCC
Confidence 677764 68999999999998653
No 79
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=99.64 E-value=3.4e-16 Score=133.14 Aligned_cols=88 Identities=26% Similarity=0.326 Sum_probs=76.2
Q ss_pred EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhh----CCC--CCC---CCCCCHHHHHHHH
Q 038651 205 MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIH----DGP--YNV---IENWNYTGLVEAF 275 (324)
Q Consensus 205 ~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~----~~~--~~~---l~~~df~~lA~a~ 275 (324)
...|+..|++.+||++|.+. .|||+|++||++|+++||+||++|++++..+ ... ..+ ++++||.++|++|
T Consensus 42 ~a~p~~~vv~i~GDG~f~~~-~~el~ta~~~~~~v~~vv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~ 120 (153)
T PF02775_consen 42 LARPDRPVVAITGDGSFLMS-LQELATAVRYGLPVVIVVLNNGGYGMTGGQQTPFGGGRFSGVDGKTFPNPDFAALAEAF 120 (153)
T ss_dssp HHSTTSEEEEEEEHHHHHHH-GGGHHHHHHTTSSEEEEEEESSBSHHHHHHHHHTTSTCHHSTBTTTSTTCGHHHHHHHT
T ss_pred hhcCcceeEEecCCcceeec-cchhHHHhhccceEEEEEEeCCcceEeccccccCcCcccccccccccccCCHHHHHHHc
Confidence 45689999999999999998 6999999999999999999999999998775 112 123 7889999999999
Q ss_pred HH---------------HHHHhHHhCCCCeEEEEE
Q 038651 276 QN---------------AIETAAVEKKDCLCFIEA 295 (324)
Q Consensus 276 G~---------------al~~a~~~~~~~p~lIeV 295 (324)
|+ +|++++ +.++|+||||
T Consensus 121 G~~~~~v~~~~~~el~~al~~a~--~~~gp~vIeV 153 (153)
T PF02775_consen 121 GIKGARVTTPDPEELEEALREAL--ESGGPAVIEV 153 (153)
T ss_dssp TSEEEEESCHSHHHHHHHHHHHH--HSSSEEEEEE
T ss_pred CCcEEEEccCCHHHHHHHHHHHH--hCCCcEEEEc
Confidence 99 777775 7899999997
No 80
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=99.63 E-value=6.9e-16 Score=130.58 Aligned_cols=77 Identities=35% Similarity=0.316 Sum_probs=72.3
Q ss_pred CcCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcCceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh
Q 038651 7 SSSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARAVGAYVVTFIVGRLSIINAIAGAYSENFPAATITA 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~ 83 (324)
..+||+ ..++++++.+.++++++.++||++|++||+||+|.+++++|++|+|||.+|+++++.+|+.+++|||+|++
T Consensus 16 fg~pg~~~~~l~~~~~~~~~~~~~~~~~E~~a~~~A~G~a~~~~~~v~~~~~gpg~~~~~~~l~~a~~~~~Pvl~i~~ 93 (154)
T cd06586 16 FGYPGDEISSLLDALREGDKRIIDTVIHELGAAGAAAGYARAGGPPVVIVTSGTGLLNAINGLADAAAEHLPVVFLIG 93 (154)
T ss_pred EEcCCcchHHHHHHHhccCCceEEeeCCHHHHHHHHHHHHHhhCCEEEEEcCCCcHHHHHHHHHHHHhcCCCEEEEeC
Confidence 358999 99999999876689999999999999999999999999999999999999999999999999999999874
No 81
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=99.59 E-value=3.2e-15 Score=132.33 Aligned_cols=91 Identities=19% Similarity=0.145 Sum_probs=73.7
Q ss_pred ecCCCeEEEecCchH-HhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhhC-C----C------CCC-CCCCCHHHHH
Q 038651 206 LSGNTAVIAETGDSW-FNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIHD-G----P------YNV-IENWNYTGLV 272 (324)
Q Consensus 206 ~~~~~~vv~d~G~~~-~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~-~----~------~~~-l~~~df~~lA 272 (324)
..|+..|++.+||++ |.+. .|||+|++||++|+++||+||++|++++..+. . . +.. .+.+||+++|
T Consensus 66 a~p~r~Vv~i~GDGs~f~m~-~~eL~ta~~~~lpv~iiVlnN~~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~iA 144 (193)
T cd03375 66 ANPDLTVIVVSGDGDLAAIG-GNHFIHAARRNIDITVIVHNNQIYGLTKGQASPTTPEGFKTKTTPYGNIEEPFNPLALA 144 (193)
T ss_pred hCCCCeEEEEeccchHhhcc-HHHHHHHHHhCCCeEEEEEcCcccccCCCccCCCCCCCCcccCCCCCCCCCCCCHHHHH
Confidence 347888999999999 4565 59999999999999999999999999986542 1 1 111 2358999999
Q ss_pred HHHHH----------------HHHHhHHhCCCCeEEEEEEecC
Q 038651 273 EAFQN----------------AIETAAVEKKDCLCFIEAIVHK 299 (324)
Q Consensus 273 ~a~G~----------------al~~a~~~~~~~p~lIeV~id~ 299 (324)
++||+ +|++|+ +.++|+||||.++=
T Consensus 145 ~a~G~~~~~~~~v~~~~el~~al~~al--~~~gp~vIev~~~C 185 (193)
T cd03375 145 LAAGATFVARGFSGDIKQLKEIIKKAI--QHKGFSFVEVLSPC 185 (193)
T ss_pred HHCCCCEEEEEecCCHHHHHHHHHHHH--hcCCCEEEEEECCC
Confidence 99997 677775 68999999999763
No 82
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=99.58 E-value=1.5e-15 Score=130.09 Aligned_cols=72 Identities=22% Similarity=0.232 Sum_probs=65.6
Q ss_pred CcCCCC-chHHHHhhhcCCCCeEe-ecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHh-hcCCcchhhh
Q 038651 7 SSSPAD-SSSLLDHLIAEPGSRDV-GCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAY-SENFPAATIT 82 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~~i~~i-~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~-~d~~Pvl~It 82 (324)
..+||+ +++|+|++.. +|++| .+|||++|++||++| |.+| ++||+.++|+| |++|||++|+ .+++|||+|+
T Consensus 17 fGvPg~~~~~l~dal~~--~i~~i~~~~ee~aa~~aAg~~-~~~~~~~v~~~~sG~g--n~~~~l~~a~~~~~~Pvl~i~ 91 (157)
T TIGR03845 17 ASVPCDNLKNLLPLIEK--DFRHIPLTREEEGVGICAGAY-LAGKKPAILMQSSGLG--NSINALASLNKTYGIPLPILA 91 (157)
T ss_pred EecCcHhHHHHHHHHHh--CCcEEecCChHHHHHHHHHHH-HhcCCcEEEEeCCcHH--HHHHHHHHHHHcCCCCEEEEE
Confidence 468999 9999999953 49999 999999999999999 9988 78888888877 9999999999 9999999998
Q ss_pred h
Q 038651 83 A 83 (324)
Q Consensus 83 ~ 83 (324)
+
T Consensus 92 g 92 (157)
T TIGR03845 92 S 92 (157)
T ss_pred e
Confidence 5
No 83
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=99.57 E-value=7.9e-15 Score=128.52 Aligned_cols=87 Identities=17% Similarity=0.167 Sum_probs=72.7
Q ss_pred CCeEEEecCchHHhhhHHHHHHHHHHhC-CCeEEEEEeCCchhhhhhhhCCCCCCCCCCCHHHHHHHHHH----------
Q 038651 209 NTAVIAETGDSWFNCQKDVDVSTMLRCE-QKNIIFLINNGNYTIEVEIHDGPYNVIENWNYTGLVEAFQN---------- 277 (324)
Q Consensus 209 ~~~vv~d~G~~~~~~~~~qEL~Ta~r~~-lpviivV~NN~~yg~~~~~~~~~~~~l~~~df~~lA~a~G~---------- 277 (324)
+..|++.+||++|.|.. |||+|++||+ +|+++||+||++|++++. |. .+.+ +++||+++|++||+
T Consensus 59 ~~~Vv~i~GDG~f~m~~-~el~ta~~~~~~pv~~vV~NN~~yg~~~~-q~-~~~~-~~~d~~~lA~a~G~~~~~~v~~~~ 134 (181)
T TIGR03846 59 DRTVIVIDGDGSLLMNL-GVLPTIAAESPKNLILVILDNGAYGSTGN-QP-TPAS-RRTDLELVAKAAGIRNVEKVADEE 134 (181)
T ss_pred CCcEEEEEcchHHHhhh-hHHHHHHHhCCCCeEEEEEeCCccccccC-cC-CCCC-CCCCHHHHHHHCCCCeEEEeCCHH
Confidence 77799999999999875 9999999999 599999999999999873 21 1222 47899999999997
Q ss_pred ----HHHHhHHhCCCCeEEEEEEecCCCC
Q 038651 278 ----AIETAAVEKKDCLCFIEAIVHKDDT 302 (324)
Q Consensus 278 ----al~~a~~~~~~~p~lIeV~id~~~~ 302 (324)
+|+ ++ +.++|+||||.+++++.
T Consensus 135 ~l~~al~-a~--~~~~p~li~v~~~~~~~ 160 (181)
T TIGR03846 135 ELRDALK-AL--AMKGPTFIHVKVKPGNA 160 (181)
T ss_pred HHHHHHH-HH--cCCCCEEEEEEeCCCCC
Confidence 554 53 68899999999998764
No 84
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=99.56 E-value=6.5e-15 Score=128.19 Aligned_cols=90 Identities=19% Similarity=0.221 Sum_probs=73.9
Q ss_pred EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhhCC---------CC--C--CCCCCCHHHH
Q 038651 205 MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIHDG---------PY--N--VIENWNYTGL 271 (324)
Q Consensus 205 ~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~~---------~~--~--~l~~~df~~l 271 (324)
...|+..+++-+||++|.+.. +||+|+++|++|+++||+||++|++++..|.. .+ . ..+.+||.++
T Consensus 63 la~~~~~vv~i~GDG~f~~~~-~el~ta~~~~~p~~~iV~nN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 141 (178)
T cd02002 63 LANPDRKVVAIIGDGSFMYTI-QALWTAARYGLPVTVVILNNRGYGALRSFLKRVGPEGPGENAPDGLDLLDPGIDFAAI 141 (178)
T ss_pred hcCCCCeEEEEEcCchhhccH-HHHHHHHHhCCCeEEEEEcCccHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHH
Confidence 344678899999999998875 99999999999999999999999998765411 11 2 2356999999
Q ss_pred HHHHHH-------------HHHHhHHhCCCCeEEEEEEe
Q 038651 272 VEAFQN-------------AIETAAVEKKDCLCFIEAIV 297 (324)
Q Consensus 272 A~a~G~-------------al~~a~~~~~~~p~lIeV~i 297 (324)
|++||+ +++++. +.++|+||||++
T Consensus 142 a~a~G~~~~~v~~~~el~~al~~a~--~~~~p~vi~v~v 178 (178)
T cd02002 142 AKAFGVEAERVETPEELDEALREAL--AEGGPALIEVVV 178 (178)
T ss_pred HHHcCCceEEeCCHHHHHHHHHHHH--hCCCCEEEEEEC
Confidence 999998 677774 678999999975
No 85
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=99.55 E-value=1.3e-14 Score=124.39 Aligned_cols=84 Identities=14% Similarity=0.043 Sum_probs=70.4
Q ss_pred CeEEEecCchHHhhhHHHHHHHHHHh-CCCeEEEEEeCCchhhhhhhhCCCCCCCCCCCHHHHHHHHHH-----------
Q 038651 210 TAVIAETGDSWFNCQKDVDVSTMLRC-EQKNIIFLINNGNYTIEVEIHDGPYNVIENWNYTGLVEAFQN----------- 277 (324)
Q Consensus 210 ~~vv~d~G~~~~~~~~~qEL~Ta~r~-~lpviivV~NN~~yg~~~~~~~~~~~~l~~~df~~lA~a~G~----------- 277 (324)
..|++.+||++|.|.. |||+|++|| ++|+++||+||++|++++..+ .+ ..++||.++|++||+
T Consensus 60 ~~Vv~i~GDG~f~m~~-~el~t~~~~~~~~i~~vV~nN~~~g~~~~~~--~~--~~~~d~~~lA~a~G~~~~~v~~~~el 134 (157)
T cd02001 60 RKVIVVDGDGSLLMNP-GVLLTAGEFTPLNLILVVLDNRAYGSTGGQP--TP--SSNVNLEAWAAACGYLVLSAPLLGGL 134 (157)
T ss_pred CcEEEEECchHHHhcc-cHHHHHHHhcCCCEEEEEEeCccccccCCcC--CC--CCCCCHHHHHHHCCCceEEcCCHHHH
Confidence 6688999999999984 999999999 599999999999999876321 11 126899999999999
Q ss_pred --HHHHhHHhCCCCeEEEEEEecCC
Q 038651 278 --AIETAAVEKKDCLCFIEAIVHKD 300 (324)
Q Consensus 278 --al~~a~~~~~~~p~lIeV~id~~ 300 (324)
+|++++ +.++|+||||.++++
T Consensus 135 ~~al~~a~--~~~gp~vi~v~i~~~ 157 (157)
T cd02001 135 GSEFAGLL--ATTGPTLLHAPIAPG 157 (157)
T ss_pred HHHHHHHH--hCCCCEEEEEEecCC
Confidence 677774 678999999999863
No 86
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=99.54 E-value=2.2e-14 Score=126.52 Aligned_cols=92 Identities=18% Similarity=0.129 Sum_probs=75.5
Q ss_pred EecCCCeEEEecCchHHhhhHHHHHHHHHHhCC-CeEEEEEeCCchhhhhhhhCCCCCCCCCCCHHHHHHHHHH------
Q 038651 205 MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQ-KNIIFLINNGNYTIEVEIHDGPYNVIENWNYTGLVEAFQN------ 277 (324)
Q Consensus 205 ~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~l-pviivV~NN~~yg~~~~~~~~~~~~l~~~df~~lA~a~G~------ 277 (324)
+..|+..|++.+||++|.|.. |||+|++||++ |+++||+||++|++++.. .....++||.++|++||+
T Consensus 62 la~p~~~Vv~i~GDG~f~m~~-~eL~ta~~~~l~~i~ivV~NN~~yg~~~~~----~~~~~~~d~~~~A~a~G~~~~~~v 136 (188)
T cd03371 62 LARPDRKVVCIDGDGAALMHM-GGLATIGGLAPANLIHIVLNNGAHDSVGGQ----PTVSFDVSLPAIAKACGYRAVYEV 136 (188)
T ss_pred HhCCCCcEEEEeCCcHHHhhc-cHHHHHHHcCCCCcEEEEEeCchhhccCCc----CCCCCCCCHHHHHHHcCCceEEec
Confidence 345678899999999999874 99999999997 699999999999987421 111236899999999997
Q ss_pred --------HHHHhHHhCCCCeEEEEEEecCCCCc
Q 038651 278 --------AIETAAVEKKDCLCFIEAIVHKDDTG 303 (324)
Q Consensus 278 --------al~~a~~~~~~~p~lIeV~id~~~~~ 303 (324)
+|++++ +.++|+||||.+++.+.|
T Consensus 137 ~~~~el~~al~~a~--~~~~p~lIev~~~~~~~~ 168 (188)
T cd03371 137 PSLEELVAALAKAL--AADGPAFIEVKVRPGSRS 168 (188)
T ss_pred CCHHHHHHHHHHHH--hCCCCEEEEEEecCCCCC
Confidence 666664 678999999999998764
No 87
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=99.54 E-value=1.3e-14 Score=126.75 Aligned_cols=91 Identities=15% Similarity=0.096 Sum_probs=72.8
Q ss_pred EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhhC--CC--C-CCCCCCCHHHHHHHHHH--
Q 038651 205 MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIHD--GP--Y-NVIENWNYTGLVEAFQN-- 277 (324)
Q Consensus 205 ~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~--~~--~-~~l~~~df~~lA~a~G~-- 277 (324)
...|+..|++.+||++|.+...|||.|++||++|+++||+||++|++++.++. .. + ....++||+++|++||+
T Consensus 65 la~p~~~Vv~i~GDG~f~~~g~~eL~ta~~~~l~i~vvV~nN~~~g~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~ 144 (178)
T cd02008 65 KASEDKKVVAVIGDSTFFHSGILGLINAVYNKANITVVILDNRTTAMTGGQPHPGTGKTLTEPTTVIDIEALVRAIGVKR 144 (178)
T ss_pred hhCCCCCEEEEecChHHhhccHHHHHHHHHcCCCEEEEEECCcceeccCCCCCCCCcccccCCCCccCHHHHHHHCCCCE
Confidence 34467788999999999876359999999999999999999999999875431 11 1 23356899999999998
Q ss_pred --------------HHHHhHHhCCCCeEEEEEEe
Q 038651 278 --------------AIETAAVEKKDCLCFIEAIV 297 (324)
Q Consensus 278 --------------al~~a~~~~~~~p~lIeV~i 297 (324)
+|++++ +.++|+||+|..
T Consensus 145 ~~v~~~~~l~~~~~al~~a~--~~~gp~lI~v~~ 176 (178)
T cd02008 145 VVVVDPYDLKAIREELKEAL--AVPGVSVIIAKR 176 (178)
T ss_pred EEecCccCHHHHHHHHHHHH--hCCCCEEEEEeC
Confidence 456664 678999999864
No 88
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=99.53 E-value=2.9e-14 Score=129.92 Aligned_cols=90 Identities=11% Similarity=0.014 Sum_probs=71.8
Q ss_pred cCCCeEEEecCchHH-hhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhh---hCC---C-----C-C-----CCCCCCH
Q 038651 207 SGNTAVIAETGDSWF-NCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEI---HDG---P-----Y-N-----VIENWNY 268 (324)
Q Consensus 207 ~~~~~vv~d~G~~~~-~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~---~~~---~-----~-~-----~l~~~df 268 (324)
.|+..||+.+||++| .|. +|||+||+|+++|+++||+||+.|++.+.+ +.. . + . +.+++||
T Consensus 78 ~p~r~VV~i~GDG~~~~m~-~~eL~ta~~~~~pv~~vVlNN~~yg~tg~q~~~~~~~~~~~~~~~~g~~~~~~~~~~~d~ 156 (235)
T cd03376 78 GKDITVVAFAGDGGTADIG-FQALSGAAERGHDILYICYDNEAYMNTGIQRSGSTPYGAWTTTTPVGKVSFGKKQPKKDL 156 (235)
T ss_pred CCCCeEEEEEcCchHHhhH-HHHHHHHHHcCCCeEEEEECCcccccCCCCCCCCCCCCCEeecCCCCccccccccccCCH
Confidence 368889999999995 565 599999999999999999999999974321 111 0 1 1 2356899
Q ss_pred HHHHHHHHH----------------HHHHhHHhCCCCeEEEEEEecC
Q 038651 269 TGLVEAFQN----------------AIETAAVEKKDCLCFIEAIVHK 299 (324)
Q Consensus 269 ~~lA~a~G~----------------al~~a~~~~~~~p~lIeV~id~ 299 (324)
.++|++||+ +|++++ +.++|+||||.++=
T Consensus 157 ~~iA~a~G~~~~~~~~v~~~~el~~al~~a~--~~~gP~lIev~~~C 201 (235)
T cd03376 157 PLIMAAHNIPYVATASVAYPEDLYKKVKKAL--SIEGPAYIHILSPC 201 (235)
T ss_pred HHHHHHcCCcEEEEEcCCCHHHHHHHHHHHH--hCCCCEEEEEECCC
Confidence 999999997 677774 68999999999874
No 89
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=99.51 E-value=5.5e-14 Score=130.70 Aligned_cols=94 Identities=15% Similarity=0.081 Sum_probs=76.5
Q ss_pred EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhhCC-----------CCCC-CCCCCHHHHH
Q 038651 205 MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIHDG-----------PYNV-IENWNYTGLV 272 (324)
Q Consensus 205 ~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~~-----------~~~~-l~~~df~~lA 272 (324)
.+.|+..||+.+||++|.+...+|+.||+|+++|+++||+||+.||+++.++.. ++.. .+++||.++|
T Consensus 82 lA~Pdr~VV~i~GDG~f~~~g~~el~ta~r~nlpi~iIV~NN~~yGmt~~Q~~~~t~~g~~~~~~~~g~~~~~~D~~~lA 161 (277)
T PRK09628 82 LANPDKHVIVVSGDGDGLAIGGNHTIHGCRRNIDLNFILINNFIYGLTNSQTSPTTPKGMWTVTAQYGNIDPTFDACKLA 161 (277)
T ss_pred HHCCCCeEEEEECchHHHHhhHHHHHHHHHhCcCeEEEEEEChHHhcceecccCCCCCCceeeeccCCCcCCCCCHHHHH
Confidence 334788899999999987655699999999999999999999999998754311 1212 2567999999
Q ss_pred HHHHH----------------HHHHhHHhCCCCeEEEEEEecCC
Q 038651 273 EAFQN----------------AIETAAVEKKDCLCFIEAIVHKD 300 (324)
Q Consensus 273 ~a~G~----------------al~~a~~~~~~~p~lIeV~id~~ 300 (324)
++||+ +|++|+ +.++|+||||.++..
T Consensus 162 ~a~G~~~va~~~v~~~~el~~al~~Al--~~~Gp~lIeV~~~c~ 203 (277)
T PRK09628 162 TAAGASFVARESVIDPQKLEKLLVKGF--SHKGFSFFDVFSNCH 203 (277)
T ss_pred HHCCCceEEEEccCCHHHHHHHHHHHH--hCCCCEEEEEcCCCC
Confidence 99997 777775 789999999999864
No 90
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=99.51 E-value=3.4e-14 Score=129.63 Aligned_cols=92 Identities=15% Similarity=0.080 Sum_probs=74.9
Q ss_pred cCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhhC-----C------C-CCCCCCCCHHHHHHH
Q 038651 207 SGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIHD-----G------P-YNVIENWNYTGLVEA 274 (324)
Q Consensus 207 ~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~-----~------~-~~~l~~~df~~lA~a 274 (324)
.|+..|++.+||++|.+..+|||+|+++|++|+++||+||+.|++.+.++. + . ..++.++||+++|++
T Consensus 85 ~p~~~Vv~i~GDG~~~~~g~~~l~ta~~~~l~i~ivVlNN~~yg~~~~q~~~~~~~g~~~~~~~~~~~~~~~D~~~iA~a 164 (237)
T cd02018 85 DKKKDVVVIGGDGATYDIGFGALSHSLFRGEDITVIVLDNEVYSNTGGQRSGATPLGADSKMAPAGKKEDKKDLVLIAAT 164 (237)
T ss_pred CCCCcEEEEeCchHHHhccHHHHHHHHHcCCCeEEEEECCccccCCCCCCCCCCcCCCcccccCCCCcCCCCCHHHHHHH
Confidence 367889999999998744469999999999999999999999998763321 1 1 135677999999999
Q ss_pred HHH----------------HHHHhHHhC-CCCeEEEEEEecCC
Q 038651 275 FQN----------------AIETAAVEK-KDCLCFIEAIVHKD 300 (324)
Q Consensus 275 ~G~----------------al~~a~~~~-~~~p~lIeV~id~~ 300 (324)
||+ +|++|+ + .++|+||||.++-.
T Consensus 165 ~G~~~~~~~~v~~~~~l~~al~~al--~~~~GP~lI~v~i~c~ 205 (237)
T cd02018 165 HGCVYVARLSPALKKHFLKVVKEAI--SRTDGPTFIHAYTPCI 205 (237)
T ss_pred CCCCEEEEEccCCHHHHHHHHHHHH--hcCCCCEEEEEeCCCC
Confidence 998 677774 6 89999999998753
No 91
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=99.46 E-value=9.8e-14 Score=130.39 Aligned_cols=92 Identities=20% Similarity=0.205 Sum_probs=74.5
Q ss_pred EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhhC--C---------CC-CCCCCCCHHHHH
Q 038651 205 MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIHD--G---------PY-NVIENWNYTGLV 272 (324)
Q Consensus 205 ~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~--~---------~~-~~l~~~df~~lA 272 (324)
++.|+..||+.+||+++.+...|||+||+|+++|+++||+||+.||+++.++. . ++ +...++||.++|
T Consensus 84 lA~pd~~VV~i~GDG~~~~mg~~eL~tA~r~nl~i~vIV~NN~~YG~t~gQ~s~t~~~g~~~~~~~~g~~~~~~d~~~lA 163 (301)
T PRK05778 84 LANPDLEVIVVGGDGDLASIGGGHFIHAGRRNIDITVIVENNGIYGLTKGQASPTTPEGSKTKTAPYGNIEPPIDPCALA 163 (301)
T ss_pred HHCCCCcEEEEeCccHHHhccHHHHHHHHHHCCCcEEEEEeCchhhcccCcccCCcCCCcccccccCCCcCCCCCHHHHH
Confidence 34478889999999997433359999999999999999999999999886431 1 12 223578999999
Q ss_pred HHHHH----------------HHHHhHHhCCCCeEEEEEEec
Q 038651 273 EAFQN----------------AIETAAVEKKDCLCFIEAIVH 298 (324)
Q Consensus 273 ~a~G~----------------al~~a~~~~~~~p~lIeV~id 298 (324)
+++|+ +|++|+ ++++|+||||.++
T Consensus 164 ~a~G~~~va~~~v~~~~eL~~ai~~A~--~~~GpalIeV~~~ 203 (301)
T PRK05778 164 LAAGATFVARSFAGDVKQLVELIKKAI--SHKGFAFIDVLSP 203 (301)
T ss_pred HHCCCCEEEEeccCCHHHHHHHHHHHH--hCCCCEEEEEcCC
Confidence 99998 777775 7899999999986
No 92
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=99.46 E-value=1.4e-13 Score=118.02 Aligned_cols=90 Identities=21% Similarity=0.285 Sum_probs=75.2
Q ss_pred EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhhC------CCCCCCCCCCHHHHHHHHHH-
Q 038651 205 MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIHD------GPYNVIENWNYTGLVEAFQN- 277 (324)
Q Consensus 205 ~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~------~~~~~l~~~df~~lA~a~G~- 277 (324)
+..|+..+++-+||++|.+. .+||+|+++|++|+++||+||++|++.+..+. ..+.+.+++||.+++++||+
T Consensus 60 ~a~~~~~vv~~~GDG~~~~~-~~~l~ta~~~~~~~~~iv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~~~G~~ 138 (168)
T cd00568 60 LAAPDRPVVCIAGDGGFMMT-GQELATAVRYGLPVIVVVFNNGGYGTIRMHQEAFYGGRVSGTDLSNPDFAALAEAYGAK 138 (168)
T ss_pred HhCCCCcEEEEEcCcHHhcc-HHHHHHHHHcCCCcEEEEEECCccHHHHHHHHHHcCCCcccccCCCCCHHHHHHHCCCe
Confidence 34567889999999999985 59999999999999999999999999876641 12356678999999999998
Q ss_pred ------------HHHHhHHhCCCCeEEEEEEe
Q 038651 278 ------------AIETAAVEKKDCLCFIEAIV 297 (324)
Q Consensus 278 ------------al~~a~~~~~~~p~lIeV~i 297 (324)
++++++ +.++|+||||++
T Consensus 139 ~~~v~~~~~l~~a~~~a~--~~~~p~~i~v~~ 168 (168)
T cd00568 139 GVRVEDPEDLEAALAEAL--AAGGPALIEVKT 168 (168)
T ss_pred EEEECCHHHHHHHHHHHH--hCCCCEEEEEEC
Confidence 666664 678999999974
No 93
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.46 E-value=1.1e-13 Score=128.63 Aligned_cols=92 Identities=20% Similarity=0.253 Sum_probs=75.9
Q ss_pred EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhhC--C---------CCC-CCCCCCHHHHH
Q 038651 205 MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIHD--G---------PYN-VIENWNYTGLV 272 (324)
Q Consensus 205 ~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~--~---------~~~-~l~~~df~~lA 272 (324)
.+.||..||+.+||+++.+..+|||+||+|+++|+++||+||+.|++.+.++. . ++. ...++||.++|
T Consensus 74 lA~pd~~VVai~GDG~~~~iG~~eL~tA~r~nl~i~~IV~NN~~Yg~t~~Q~s~~t~~g~~~~~~p~g~~~~~~D~~~lA 153 (280)
T PRK11869 74 ATNPELTVIAEGGDGDMYAEGGNHLIHAIRRNPDITVLVHNNQVYGLTKGQASPTTLKGFKTPTQPWGVFEEPFNPIALA 153 (280)
T ss_pred HHCCCCcEEEEECchHHhhCcHHHHHHHHHhCcCcEEEEEECHHHhhhcceecCCCCCCcccccCCCCccCCCCCHHHHH
Confidence 34578889999999998876569999999999999999999999999875431 1 112 23468999999
Q ss_pred HHHHH----------------HHHHhHHhCCCCeEEEEEEec
Q 038651 273 EAFQN----------------AIETAAVEKKDCLCFIEAIVH 298 (324)
Q Consensus 273 ~a~G~----------------al~~a~~~~~~~p~lIeV~id 298 (324)
+++|+ +|++|+ +.++|+||||.+.
T Consensus 154 ~a~G~~~va~~~~~~~~~l~~~i~~Al--~~~Gp~lIeV~~p 193 (280)
T PRK11869 154 IALDASFVARTFSGDIEETKEILKEAI--KHKGLAIVDIFQP 193 (280)
T ss_pred HHCCCCEEEEeCCCCHHHHHHHHHHHH--hCCCCEEEEEECC
Confidence 99998 777775 7899999999875
No 94
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=99.41 E-value=8.9e-13 Score=115.34 Aligned_cols=90 Identities=20% Similarity=0.193 Sum_probs=70.7
Q ss_pred CeEEEecCchHHhhhHHHHHHHHHHhCC-CeEEEEEeCCchhhhhhhhCCCCCCCCCCCHHHHHHHHHH----------H
Q 038651 210 TAVIAETGDSWFNCQKDVDVSTMLRCEQ-KNIIFLINNGNYTIEVEIHDGPYNVIENWNYTGLVEAFQN----------A 278 (324)
Q Consensus 210 ~~vv~d~G~~~~~~~~~qEL~Ta~r~~l-pviivV~NN~~yg~~~~~~~~~~~~l~~~df~~lA~a~G~----------a 278 (324)
..|++.+||++|.|.. |||+|++||++ |+++||+||++|++.+..+ .+. ..++||.++|++||+ .
T Consensus 60 ~~vv~i~GDG~f~m~~-~el~ta~~~~~~~l~vvV~NN~~~~~~~~~~--~~~-~~~~d~~~lA~a~G~~~~~v~~~~~e 135 (179)
T cd03372 60 RKVIVIDGDGSLLMNL-GALATIAAEKPKNLIIVVLDNGAYGSTGNQP--THA-GKKTDLEAVAKACGLDNVATVASEEA 135 (179)
T ss_pred CcEEEEECCcHHHhCH-HHHHHHHHcCCCCEEEEEEcCccccccCCCC--CCC-CCCCCHHHHHHHcCCCeEEecCCHHH
Confidence 6789999999999874 99999999995 7999999999999874321 122 237999999999998 3
Q ss_pred HHHhHHhCCCCeEEEEEEecCCCCc
Q 038651 279 IETAAVEKKDCLCFIEAIVHKDDTG 303 (324)
Q Consensus 279 l~~a~~~~~~~p~lIeV~id~~~~~ 303 (324)
|++++....++|+||||.+++++.|
T Consensus 136 l~~al~~a~~gp~lIev~~~~~~~~ 160 (179)
T cd03372 136 FEKAVEQALDGPSFIHVKIKPGNTD 160 (179)
T ss_pred HHHHHHHhcCCCEEEEEEEcCCCCC
Confidence 4444311117999999999997765
No 95
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=99.38 E-value=9.2e-13 Score=123.19 Aligned_cols=91 Identities=22% Similarity=0.223 Sum_probs=73.9
Q ss_pred ecCCCeEEEecCchH-HhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhhCC-----------CCCCC-CCCCHHHHH
Q 038651 206 LSGNTAVIAETGDSW-FNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIHDG-----------PYNVI-ENWNYTGLV 272 (324)
Q Consensus 206 ~~~~~~vv~d~G~~~-~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~~-----------~~~~l-~~~df~~lA 272 (324)
+.|+..||+.+||+. |.+. .|||+||+|+++|+++||+||+.|++++.++.. ++... +++||.++|
T Consensus 84 A~Pd~~VV~i~GDG~~f~mg-~~eL~tA~r~nl~i~vIV~NN~~yGmt~~q~s~tt~~g~~~~~~~~g~~~~~~d~~~lA 162 (286)
T PRK11867 84 ANPDLTVIVVTGDGDALAIG-GNHFIHALRRNIDITYILFNNQIYGLTKGQYSPTSPVGFVTKTTPYGSIEPPFNPVELA 162 (286)
T ss_pred hCCCCcEEEEeCccHHHhCC-HHHHHHHHHhCCCcEEEEEeCHHHhhhcCccCCCCCCCcccccccCCCCCCCCCHHHHH
Confidence 347888999999995 7776 499999999999999999999999999864311 11122 358999999
Q ss_pred HHHHH----------------HHHHhHHhCCCCeEEEEEEecC
Q 038651 273 EAFQN----------------AIETAAVEKKDCLCFIEAIVHK 299 (324)
Q Consensus 273 ~a~G~----------------al~~a~~~~~~~p~lIeV~id~ 299 (324)
+++|+ +|++|+ +.++|+||||.++=
T Consensus 163 ~a~Ga~~va~~~~~~~~el~~al~~Al--~~~Gp~lIev~~~C 203 (286)
T PRK11867 163 LGAGATFVARGFDSDVKQLTELIKAAI--NHKGFSFVEILQPC 203 (286)
T ss_pred HHCCCcEEEEecCCCHHHHHHHHHHHH--hCCCCEEEEEeCCC
Confidence 99997 777775 78999999999874
No 96
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.33 E-value=3.1e-12 Score=118.96 Aligned_cols=89 Identities=19% Similarity=0.147 Sum_probs=72.5
Q ss_pred cCCCeEEEecCch-HHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhhC------CCC--CCC----CCCCHHHHHH
Q 038651 207 SGNTAVIAETGDS-WFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIHD------GPY--NVI----ENWNYTGLVE 273 (324)
Q Consensus 207 ~~~~~vv~d~G~~-~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~------~~~--~~l----~~~df~~lA~ 273 (324)
.|+..||+.+||+ +|.+. +|||.||+|+|+|+++||+||+.|++.+.++. ..+ ... .+.||.++|+
T Consensus 75 ~Pd~~VV~i~GDG~~f~ig-~~eL~tA~rrn~~i~vIV~nN~~ygmtggQ~s~~t~~g~~t~~t~~g~~~~~~d~~~iA~ 153 (279)
T PRK11866 75 NPKLTVIGYGGDGDGYGIG-LGHLPHAARRNVDITYIVSNNQVYGLTTGQASPTTPRGVKTKTTPDGNIEEPFNPIALAL 153 (279)
T ss_pred CCCCcEEEEECChHHHHcc-HHHHHHHHHHCcCcEEEEEEChhhhhhcccccCCCCCCceeeccCCCCCCCCCCHHHHHH
Confidence 4678899999999 57776 59999999999999999999999999985431 111 112 2359999999
Q ss_pred HHHH----------------HHHHhHHhCCCCeEEEEEEec
Q 038651 274 AFQN----------------AIETAAVEKKDCLCFIEAIVH 298 (324)
Q Consensus 274 a~G~----------------al~~a~~~~~~~p~lIeV~id 298 (324)
++|+ +|++|+ +.+||+||||...
T Consensus 154 a~G~~~Va~~~~~~~~~l~~~l~~Al--~~~Gps~I~v~~p 192 (279)
T PRK11866 154 AAGATFVARGFSGDVKHLKEIIKEAI--KHKGFSFIDVLSP 192 (279)
T ss_pred HCCCCEEEEEcCCCHHHHHHHHHHHH--hCCCCEEEEEeCC
Confidence 9998 777775 7899999999875
No 97
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=99.28 E-value=4e-12 Score=118.65 Aligned_cols=90 Identities=13% Similarity=0.082 Sum_probs=72.1
Q ss_pred ecCCCeEEEecCchHHh-hhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhhC--CC---------CCCC---CCCCHHH
Q 038651 206 LSGNTAVIAETGDSWFN-CQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIHD--GP---------YNVI---ENWNYTG 270 (324)
Q Consensus 206 ~~~~~~vv~d~G~~~~~-~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~--~~---------~~~l---~~~df~~ 270 (324)
+.|+..||+.+||++|. +. .|||.||+|+++|+++||+||+.||+++.++. .. +..+ .+++|.+
T Consensus 68 A~Pd~~VVai~GDG~f~~mg-~~eL~tA~r~nl~I~vIVlNN~~yGmt~gQ~sp~t~~G~~~~~~~~g~~~~~~np~~~a 146 (287)
T TIGR02177 68 ANPHLKVIVVGGDGDLYGIG-GNHFVAAGRRNVDITVIVHDNQVYGLTKGQASPTLLKGVKTKSLPYPNIQDPVNPLLLA 146 (287)
T ss_pred HCCCCcEEEEeCchHHHhcc-HHHHHHHHHhCcCeEEEEEECHHHHhhhcccccCccCCcceeecccCccCCCCCHHHHH
Confidence 34788899999999974 54 59999999999999999999999999986541 11 1111 2567889
Q ss_pred HHHHHHH--------------HHHHhHHhCCCCeEEEEEEec
Q 038651 271 LVEAFQN--------------AIETAAVEKKDCLCFIEAIVH 298 (324)
Q Consensus 271 lA~a~G~--------------al~~a~~~~~~~p~lIeV~id 298 (324)
+|+++|. +|++|+ ++++|+||||...
T Consensus 147 ~A~g~g~va~~~~~~~~eL~~ai~~Al--~~~GpslIeV~~p 186 (287)
T TIGR02177 147 IALGYTFVARGFSGDVAHLKEIIKEAI--NHKGYALVDILQP 186 (287)
T ss_pred HhCCCCeEEEEecCCHHHHHHHHHHHH--hCCCCEEEEEeCC
Confidence 9988876 777775 7899999999876
No 98
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=99.28 E-value=5.5e-12 Score=129.40 Aligned_cols=93 Identities=12% Similarity=0.041 Sum_probs=76.7
Q ss_pred EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhhCC--CC----CCCCCCCHHHHHHHHHH-
Q 038651 205 MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIHDG--PY----NVIENWNYTGLVEAFQN- 277 (324)
Q Consensus 205 ~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~~--~~----~~l~~~df~~lA~a~G~- 277 (324)
...|+..||+.+||++|.+..+|||+|++++++|+++||+||++|++++.++.. .+ .+..++||.++|++||+
T Consensus 417 ~a~p~~~Vv~i~GDG~f~~~g~~eL~tav~~~~~i~~vVlnN~~~g~~~~q~~~~~~~~~~~~~~~~~d~~~ia~a~G~~ 496 (595)
T TIGR03336 417 KAGEKQRIVAFIGDSTFFHTGIPGLINAVYNKANITVVILDNRITAMTGHQPNPGTGVTGMGEATKEISIEELCRASGVE 496 (595)
T ss_pred hcCCCCCEEEEeccchhhhcCHHHHHHHHHcCCCeEEEEEcCcceeccCCCCCCCCCCCCCCCcCCCcCHHHHHHHcCCC
Confidence 457888999999999999875699999999999999999999999998754311 11 23467999999999999
Q ss_pred ---------------HHHHhHHhCCCCeEEEEEEecC
Q 038651 278 ---------------AIETAAVEKKDCLCFIEAIVHK 299 (324)
Q Consensus 278 ---------------al~~a~~~~~~~p~lIeV~id~ 299 (324)
+|++++ +.++|+||++..+-
T Consensus 497 ~~~v~~~~~l~~l~~al~~a~--~~~gp~li~v~~~C 531 (595)
T TIGR03336 497 FVEVVDPLNVKETIEVFKAAL--AAEGVSVIIAKQPC 531 (595)
T ss_pred EEEEeCcCCHHHHHHHHHHHH--hcCCCEEEEEcccC
Confidence 556664 68899999997754
No 99
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=99.21 E-value=3e-11 Score=103.54 Aligned_cols=67 Identities=16% Similarity=0.263 Sum_probs=59.3
Q ss_pred CcchhhhhhhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCC------CCc--------------------cc
Q 038651 76 FPAATITALLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSA------KGM--------------------IV 129 (324)
Q Consensus 76 ~Pvl~It~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~g------kg~--------------------~l 129 (324)
.|--+...|++||||+|++|+|+.++++.+++++|+|++|+||++|+++ ||+ .+
T Consensus 16 ~p~~aa~lLk~AKRPvIivG~ga~~~~a~e~l~~laEklgiPVvtT~~~~~~~~~kgv~~~~~~lg~~g~~~~~p~~e~~ 95 (162)
T TIGR00315 16 SPKLVAMMIKRAKRPLLIVGPENLEDEEKELIVKFIEKFDLPVVATADTYRALIEAGIESEEMNLHEITQFLADPSWEGF 95 (162)
T ss_pred CHHHHHHHHHcCCCcEEEECCCcCcccHHHHHHHHHHHHCCCEEEcCccccccccCCeecCCCCHHHHHHhccCchhhhc
Confidence 3444444589999999999999999999999999999999999999998 777 44
Q ss_pred ---cCCcEEEEEcCcc
Q 038651 130 ---EFADAYIFVESIF 142 (324)
Q Consensus 130 ---~~aDlvl~lG~~~ 142 (324)
.++|+||++|+++
T Consensus 96 ~g~g~~DlvlfvG~~~ 111 (162)
T TIGR00315 96 DGEGNYDLVLFLGIIY 111 (162)
T ss_pred cCCCCcCEEEEeCCcc
Confidence 8999999999998
No 100
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=99.11 E-value=1.4e-10 Score=100.02 Aligned_cols=68 Identities=21% Similarity=0.226 Sum_probs=58.9
Q ss_pred CcchhhhhhhcCCCcEEEECCCCCc-cchHHHHHHHHHHhCCcEEecCC------CCCc--------------------c
Q 038651 76 FPAATITALLKAVKPAMIGGPKLSV-SKATIAFVELADACGYAFAVMPS------AKGM--------------------I 128 (324)
Q Consensus 76 ~Pvl~It~L~~AkrPvIl~G~g~~~-~~a~~~l~~lae~l~~Pv~tt~~------gkg~--------------------~ 128 (324)
.|=.+...|++||||+|++|+|+++ .++.+++++|+|++++||++|++ +||+ .
T Consensus 23 ~p~~aa~lI~~AKrPlIivG~ga~~~~ea~e~l~elaEkl~iPVvtT~~~~~~~~~kgv~~~~~~lg~lg~~~~~p~~e~ 102 (171)
T PRK00945 23 SPKIAAMMIKKAKRPLLVVGSLLLDDEELLDRAVKIAKKANIPVAATGGSYKGLIDKGVDAKYINLHELTNYLKDPNWKG 102 (171)
T ss_pred CHHHHHHHHHhCCCcEEEECcCccccchHHHHHHHHHHHHCCCEEEccccccccccCCccCCcccHHHHHhhccCchhhh
Confidence 3444444589999999999999998 88899999999999999999999 8887 3
Q ss_pred c---cCCcEEEEEcCccC
Q 038651 129 V---EFADAYIFVESIFN 143 (324)
Q Consensus 129 l---~~aDlvl~lG~~~~ 143 (324)
+ .++|+||++|+++.
T Consensus 103 ~~g~~~~DlvlfvG~~~~ 120 (171)
T PRK00945 103 LDGNGNYDLVIFIGVTYY 120 (171)
T ss_pred hcCCCCcCEEEEecCCch
Confidence 4 69999999999984
No 101
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=99.01 E-value=5.7e-10 Score=104.98 Aligned_cols=88 Identities=17% Similarity=0.127 Sum_probs=67.8
Q ss_pred cCCCeEEEecCchHHhhhH-HHHHHHHHHhCCCeEEEEEeCCchhhhhhhhCCCCCCCCCCCHHHHHHHHHH--------
Q 038651 207 SGNTAVIAETGDSWFNCQK-DVDVSTMLRCEQKNIIFLINNGNYTIEVEIHDGPYNVIENWNYTGLVEAFQN-------- 277 (324)
Q Consensus 207 ~~~~~vv~d~G~~~~~~~~-~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~~~~~~l~~~df~~lA~a~G~-------- 277 (324)
.++.++++..||+++.+.. .+||.||.++++|+++||.||+ |++....+.. .+.+||.++|++||+
T Consensus 124 ~~~~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~vv~NN~-~~i~~~~~~~----~~~~~~~~~a~a~G~~~~~Vdg~ 198 (293)
T cd02000 124 GEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFVCENNG-YAISTPTSRQ----TAGTSIADRAAAYGIPGIRVDGN 198 (293)
T ss_pred CCCCEEEEEeCCCccccchHHHHHHHHHhhCCCEEEEEeeCC-eeccCCHHHH----hCCccHHHHHHhCCCCEEEECCC
Confidence 4688999999999986653 3779999999999999999995 9986543321 246899999999988
Q ss_pred -------HHHHhHH--hCCCCeEEEEEEecC
Q 038651 278 -------AIETAAV--EKKDCLCFIEAIVHK 299 (324)
Q Consensus 278 -------al~~a~~--~~~~~p~lIeV~id~ 299 (324)
++++|+. .+.++|+||||.+.+
T Consensus 199 d~~~v~~a~~~A~~~ar~~~~P~lIev~~~r 229 (293)
T cd02000 199 DVLAVYEAAKEAVERARAGGGPTLIEAVTYR 229 (293)
T ss_pred CHHHHHHHHHHHHHHHHccCCCEEEEEEEec
Confidence 3444421 156799999999865
No 102
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=98.91 E-value=2.2e-09 Score=103.14 Aligned_cols=87 Identities=16% Similarity=0.108 Sum_probs=66.7
Q ss_pred ecCCCeEEEecCchHHhhhH-HHHHHHHHHhCCCeEEEEEeCCchhhhhhhhCCCCCCCCCCCHHHHHHHHHH-------
Q 038651 206 LSGNTAVIAETGDSWFNCQK-DVDVSTMLRCEQKNIIFLINNGNYTIEVEIHDGPYNVIENWNYTGLVEAFQN------- 277 (324)
Q Consensus 206 ~~~~~~vv~d~G~~~~~~~~-~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~~~~~~l~~~df~~lA~a~G~------- 277 (324)
..++.++++..||++|.+.. .+||.||++++||+++||+||+ |++..... .....+||.++|++||+
T Consensus 141 ~~~~~~vv~~~GDGa~~~g~~~EaL~tA~~~~LPvi~Vv~NN~-~~~~~~~~----~~~~~~d~~~~a~a~G~~~~~Vdg 215 (341)
T TIGR03181 141 RGEDNVAVTYFGDGGTSEGDFYEALNFAGVFKAPVVFFVQNNQ-WAISVPRS----KQTAAPTLAQKAIAYGIPGVQVDG 215 (341)
T ss_pred hCCCCEEEEEecCCccccChHHHHHHHHhccCCCEEEEEECCC-Cccccchh----hhhCCcCHHHHHhhCCCCEEEECC
Confidence 34788999999999997663 3889999999999999999996 66421111 11245799999999998
Q ss_pred ------------HHHHhHHhCCCCeEEEEEEecC
Q 038651 278 ------------AIETAAVEKKDCLCFIEAIVHK 299 (324)
Q Consensus 278 ------------al~~a~~~~~~~p~lIeV~id~ 299 (324)
+++++. +.++|+|||+.+.+
T Consensus 216 ~d~~av~~a~~~A~~~a~--~~~gP~lIev~t~R 247 (341)
T TIGR03181 216 NDVLAVYAVTKEAVERAR--SGGGPTLIEAVTYR 247 (341)
T ss_pred CCHHHHHHHHHHHHHHHH--cCCCCEEEEEEeec
Confidence 344443 66899999999865
No 103
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=98.86 E-value=4e-09 Score=100.22 Aligned_cols=87 Identities=14% Similarity=0.045 Sum_probs=66.4
Q ss_pred CCCeEEEecCchHHhhhHH-HHHHHHHHhCCCeEEEEEeCCchhhhhhhhCCCCCCCCCCCHHHHHHHHHH---------
Q 038651 208 GNTAVIAETGDSWFNCQKD-VDVSTMLRCEQKNIIFLINNGNYTIEVEIHDGPYNVIENWNYTGLVEAFQN--------- 277 (324)
Q Consensus 208 ~~~~vv~d~G~~~~~~~~~-qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~~~~~~l~~~df~~lA~a~G~--------- 277 (324)
++.++++..||+++..... ++|.++.++++|+++||+||+ |++....+.. ...+||+++|++||+
T Consensus 131 ~~~~vv~~~GDGa~~~g~~~ealn~A~~~~lPvi~vv~NN~-yg~s~~~~~~----~~~~~~a~~A~a~G~~~~~Vdg~d 205 (315)
T TIGR03182 131 NDNVTACFFGDGAANQGQFYESFNMAALWKLPVIFVIENNL-YAMGTSVERS----SSVTDLYKRGESFGIPGERVDGMD 205 (315)
T ss_pred CCCEEEEEeCCCcccccHHHHHHHHhhccCcCEEEEEEcCC-ccccCCHHHH----hCCcCHHHHHHhCCCCEEEECCCC
Confidence 6889999999999864432 679999999999999999995 9987544321 235789999999998
Q ss_pred ------HHHHhHH--hCCCCeEEEEEEecC
Q 038651 278 ------AIETAAV--EKKDCLCFIEAIVHK 299 (324)
Q Consensus 278 ------al~~a~~--~~~~~p~lIeV~id~ 299 (324)
++++|+. .+.++|+|||+.+.+
T Consensus 206 ~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 235 (315)
T TIGR03182 206 VLAVREAAKEAVERARSGKGPILLEMKTYR 235 (315)
T ss_pred HHHHHHHHHHHHHHHHccCCCEEEEEeCCc
Confidence 2343321 256799999999854
No 104
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=98.80 E-value=1.3e-08 Score=93.96 Aligned_cols=89 Identities=19% Similarity=0.107 Sum_probs=71.3
Q ss_pred cCCCeEEEecCchHHhhh-HHHHHHHHHHhCCCeEEEEEeCCchhhhhhhhCCCCCCCCCCCHHHHHHHHHH--------
Q 038651 207 SGNTAVIAETGDSWFNCQ-KDVDVSTMLRCEQKNIIFLINNGNYTIEVEIHDGPYNVIENWNYTGLVEAFQN-------- 277 (324)
Q Consensus 207 ~~~~~vv~d~G~~~~~~~-~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~~~~~~l~~~df~~lA~a~G~-------- 277 (324)
.++..|++.+||+.+.+. ..+||.||.++++|.+++|+||++|++..... .....+||.+++++||+
T Consensus 125 ~~~~~v~~i~GDG~~~~G~~~eal~~a~~~~l~~li~vvdnN~~~~~~~~~----~~~~~~~~~~~~~a~G~~~~~v~G~ 200 (255)
T cd02012 125 GFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLIAIVDSNRIQIDGPTD----DILFTEDLAKKFEAFGWNVIEVDGH 200 (255)
T ss_pred CCCCEEEEEECcccccccHHHHHHHHHHHcCCCcEEEEEECCCccccCcHh----hccCchhHHHHHHHcCCeEEEECCC
Confidence 458889999999998763 24999999999999999999999998754321 33456899999999998
Q ss_pred -------HHHHhHHhCC-CCeEEEEEEecCCC
Q 038651 278 -------AIETAAVEKK-DCLCFIEAIVHKDD 301 (324)
Q Consensus 278 -------al~~a~~~~~-~~p~lIeV~id~~~ 301 (324)
+|+++. +. ++|++|++.+.+..
T Consensus 201 d~~~l~~al~~a~--~~~~~P~~I~~~t~kg~ 230 (255)
T cd02012 201 DVEEILAALEEAK--KSKGKPTLIIAKTIKGK 230 (255)
T ss_pred CHHHHHHHHHHHH--HcCCCCEEEEEEeeccc
Confidence 555553 33 89999999998744
No 105
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=98.79 E-value=1.3e-08 Score=97.63 Aligned_cols=83 Identities=19% Similarity=0.051 Sum_probs=64.2
Q ss_pred CCCeEEEecCchHHhhhH-HHHHHHHHHhCCCeEEEEEeCC-chhhhhhhhCCCCCCCCCCCHHHHHHHHHH--------
Q 038651 208 GNTAVIAETGDSWFNCQK-DVDVSTMLRCEQKNIIFLINNG-NYTIEVEIHDGPYNVIENWNYTGLVEAFQN-------- 277 (324)
Q Consensus 208 ~~~~vv~d~G~~~~~~~~-~qEL~Ta~r~~lpviivV~NN~-~yg~~~~~~~~~~~~l~~~df~~lA~a~G~-------- 277 (324)
|+.++++-.||+++.... +.+|.||++++||+++||.||+ +|+.....+ ...+||.++|++||+
T Consensus 156 ~~~vvv~~~GDGa~~~G~~~Ealn~A~~~~LPvifvv~NN~~~i~~~~~~~------~~~~d~a~~a~a~G~~~~~Vdg~ 229 (341)
T CHL00149 156 PLRVTACFFGDGTTNNGQFFECLNMAVLWKLPIIFVVENNQWAIGMAHHRS------TSIPEIHKKAEAFGLPGIEVDGM 229 (341)
T ss_pred CCCEEEEEeCCchhhhcHHHHHHHHHhhcCCCEEEEEEeCCeeeecchhhe------eCCccHHHHHHhCCCCEEEEeCC
Confidence 688999999999986321 2579999999999999999999 677643211 124799999999988
Q ss_pred -----------HHHHhHHhCCCCeEEEEEEec
Q 038651 278 -----------AIETAAVEKKDCLCFIEAIVH 298 (324)
Q Consensus 278 -----------al~~a~~~~~~~p~lIeV~id 298 (324)
|++++. +.++|+|||+.+-
T Consensus 230 d~~av~~a~~~A~~~ar--~~~gP~lIev~ty 259 (341)
T CHL00149 230 DVLAVREVAKEAVERAR--QGDGPTLIEALTY 259 (341)
T ss_pred CHHHHHHHHHHHHHHHH--hCCCCEEEEEEEe
Confidence 444443 5689999999994
No 106
>PRK05899 transketolase; Reviewed
Probab=98.55 E-value=1.6e-07 Score=97.16 Aligned_cols=84 Identities=17% Similarity=0.040 Sum_probs=69.1
Q ss_pred CCeEEEecCchHHhhhHHHH-HHHHHHhCCCeEEEEEeCCchhhhhhhhCCCCCCCCCCCHHHHHHHHHH----------
Q 038651 209 NTAVIAETGDSWFNCQKDVD-VSTMLRCEQKNIIFLINNGNYTIEVEIHDGPYNVIENWNYTGLVEAFQN---------- 277 (324)
Q Consensus 209 ~~~vv~d~G~~~~~~~~~qE-L~Ta~r~~lpviivV~NN~~yg~~~~~~~~~~~~l~~~df~~lA~a~G~---------- 277 (324)
+..|++..||+.+.+...+| |.||.+++||.+++|+||++|++.... ....++||.+++++||+
T Consensus 150 ~~~v~~v~GDG~~~~g~~~Eal~~A~~~~L~~li~v~dnN~~~~~~~~-----~~~~~~~~~~~~~a~G~~~~~VdG~d~ 224 (624)
T PRK05899 150 DHYTYVLCGDGDLMEGISHEACSLAGHLKLGNLIVIYDDNRISIDGPT-----EGWFTEDVKKRFEAYGWHVIEVDGHDV 224 (624)
T ss_pred CCeEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEECCCCcccccc-----cccccccHHHHhccCCCeEEEECCCCH
Confidence 67899999999998775455 999999999999999999999886422 23346899999999998
Q ss_pred -----HHHHhHHhCCCCeEEEEEEecC
Q 038651 278 -----AIETAAVEKKDCLCFIEAIVHK 299 (324)
Q Consensus 278 -----al~~a~~~~~~~p~lIeV~id~ 299 (324)
+|++|. +.++|++|+|.+.+
T Consensus 225 ~~l~~al~~a~--~~~~P~vI~v~t~k 249 (624)
T PRK05899 225 EAIDAAIEEAK--ASTKPTLIIAKTII 249 (624)
T ss_pred HHHHHHHHHHH--hcCCCEEEEEEeEe
Confidence 566664 56899999999854
No 107
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=98.49 E-value=2.6e-07 Score=91.19 Aligned_cols=83 Identities=16% Similarity=0.003 Sum_probs=62.2
Q ss_pred CCCeEEEecCchHHhhhH-HHHHHHHHHhCCCeEEEEEeCC-chhhhhhhhCCCCCCCCCCCHHHHHHHHHH--------
Q 038651 208 GNTAVIAETGDSWFNCQK-DVDVSTMLRCEQKNIIFLINNG-NYTIEVEIHDGPYNVIENWNYTGLVEAFQN-------- 277 (324)
Q Consensus 208 ~~~~vv~d~G~~~~~~~~-~qEL~Ta~r~~lpviivV~NN~-~yg~~~~~~~~~~~~l~~~df~~lA~a~G~-------- 277 (324)
++.++++..||+.+.... +.+|.+|..++||+++||.||+ +++.....+ ...+||.+.|++||+
T Consensus 222 ~~~vvv~~~GDGa~~eG~f~EaLn~A~~~~LPvIfVV~NN~yaig~~~~~~------t~~~dia~~A~a~G~~~~~VDG~ 295 (433)
T PLN02374 222 CDDVTLAFFGDGTCNNGQFFECLNMAALWKLPIVFVVENNLWAIGMSHLRA------TSDPEIWKKGPAFGMPGVHVDGM 295 (433)
T ss_pred CCCEEEEEECCCccccChHHHHHHHHHHhCCCEEEEEeCCCEeecceeeec------cCCCCHHHHHHhcCCcEEEECCC
Confidence 578899999999875432 3799999999999999999998 556532211 124688888888887
Q ss_pred -----------HHHHhHHhCCCCeEEEEEEec
Q 038651 278 -----------AIETAAVEKKDCLCFIEAIVH 298 (324)
Q Consensus 278 -----------al~~a~~~~~~~p~lIeV~id 298 (324)
+++++. +.++|+|||+.+-
T Consensus 296 D~~av~~a~~~A~~~Ar--~g~gP~LIe~~ty 325 (433)
T PLN02374 296 DVLKVREVAKEAIERAR--RGEGPTLVECETY 325 (433)
T ss_pred CHHHHHHHHHHHHHHHH--HcCCCEEEEEEEE
Confidence 455553 5689999999883
No 108
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=97.93 E-value=3.9e-05 Score=72.19 Aligned_cols=89 Identities=13% Similarity=0.086 Sum_probs=70.0
Q ss_pred CCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhhC-----------CC------CCCCCCCCHHH
Q 038651 208 GNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIHD-----------GP------YNVIENWNYTG 270 (324)
Q Consensus 208 ~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~-----------~~------~~~l~~~df~~ 270 (324)
++..|++..||+++.-..++.|.-|++.+.++++||+||..|++--.+.. .+ ....+..|+.+
T Consensus 90 ~~~~Vv~~~GDG~~~dIG~~~L~~a~~r~~ni~~ivlDNe~Y~nTGgQ~S~~Tp~Ga~t~tsp~Gk~~~G~~~~kkd~~~ 169 (299)
T PRK11865 90 KKVNVVAIGGDGGTADIGFQSLSGAMERGHNILYLMYDNEAYMNTGIQRSGSTPFGASTTTSPAGKYSRGEDRPKKNMPL 169 (299)
T ss_pred CCCeEEEEeCCchHhhccHHHHHHHHHcCCCeEEEEECCccccCCCCCCCCCCCCCcccccCCCCcccCCCCCCCCCHHH
Confidence 35568888999987666679999999999999999999999987533210 01 01334689999
Q ss_pred HHHHHHH----------------HHHHhHHhCCCCeEEEEEEec
Q 038651 271 LVEAFQN----------------AIETAAVEKKDCLCFIEAIVH 298 (324)
Q Consensus 271 lA~a~G~----------------al~~a~~~~~~~p~lIeV~id 298 (324)
+|.+.|+ ++++|+ +.+||.+|+|...
T Consensus 170 Ia~a~g~~YVA~~~~~~~~~l~~~i~~A~--~~~Gps~I~v~sP 211 (299)
T PRK11865 170 IMAAHGIPYVATASIGYPEDFMEKVKKAK--EVEGPAYIQVLQP 211 (299)
T ss_pred HHHHcCCCEEEEEeCCCHHHHHHHHHHHH--hCCCCEEEEEECC
Confidence 9999998 778885 7899999999864
No 109
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=97.90 E-value=2.1e-05 Score=80.87 Aligned_cols=88 Identities=14% Similarity=0.181 Sum_probs=60.2
Q ss_pred CCCeEEEecCchHH--hhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhhCCCCCCCCCCCHHHHHHHHHH--------
Q 038651 208 GNTAVIAETGDSWF--NCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIHDGPYNVIENWNYTGLVEAFQN-------- 277 (324)
Q Consensus 208 ~~~~vv~d~G~~~~--~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~~~~~~l~~~df~~lA~a~G~-------- 277 (324)
++..|+|..||+.+ ++. .++|.||.+|++|+ ++|+||++|++-..... ....+...++.+++++||.
T Consensus 139 ~~~~v~~i~GDG~l~eG~~-~Eal~~A~~~~~nl-i~IvdnN~~~i~~~~~~-~~~~~~~~~~~~~~~a~G~~~~~~vdG 215 (580)
T PRK05444 139 EDRKVVAVIGDGALTGGMA-FEALNNAGDLKSDL-IVILNDNEMSISPNVGA-LSNYLARLRSSTLFEELGFNYIGPIDG 215 (580)
T ss_pred CCCeEEEEEcccccccCHH-HHHHHHHHhhCCCE-EEEEECCCCcCCCcchh-hhhhhccccHHHHHHHcCCCeeeeeCC
Confidence 67789999999998 355 49999999999988 68899999974321100 0000122345566666665
Q ss_pred --------HHHHhHHhCCCCeEEEEEEecCC
Q 038651 278 --------AIETAAVEKKDCLCFIEAIVHKD 300 (324)
Q Consensus 278 --------al~~a~~~~~~~p~lIeV~id~~ 300 (324)
+|++++ +.++|++|++.+...
T Consensus 216 ~d~~~l~~al~~a~--~~~~P~lI~~~T~kg 244 (580)
T PRK05444 216 HDLDALIETLKNAK--DLKGPVLLHVVTKKG 244 (580)
T ss_pred CCHHHHHHHHHHHH--hCCCCEEEEEEecCC
Confidence 445553 567999999999763
No 110
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=97.83 E-value=5.3e-05 Score=71.31 Aligned_cols=88 Identities=14% Similarity=0.094 Sum_probs=68.1
Q ss_pred CCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhh-C----C------C-CCCCCCCCHHHHHHHHH
Q 038651 209 NTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIH-D----G------P-YNVIENWNYTGLVEAFQ 276 (324)
Q Consensus 209 ~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~-~----~------~-~~~l~~~df~~lA~a~G 276 (324)
+-.|++..||+++.-..++.|.-|+..++|+++||.||..|++.-.+. . + + ....+..|..+++.++|
T Consensus 92 ~~~Vva~~GDG~~~~~g~~~l~~A~~~~~~v~~vv~dN~~~~~TGgQ~S~~Tp~ga~t~tsp~G~~~~kkdi~~i~~a~g 171 (300)
T PRK11864 92 GVIVVGWAGDGGTADIGFQALSGAAERNHDILYIMYDNEAYMNTGIQRSSSTPYGAWTTTTPGGKREHKKPVPDIMAAHK 171 (300)
T ss_pred CcEEEEEEccCccccccHHHHHHHHHhCcCEEEEEECCeeeecCCCCCCCCCcCCCccccCCCCCcCCCCCHHHHHHHcC
Confidence 345666889988655556999999999999999999999998764332 0 1 1 12335689999999999
Q ss_pred H----------------HHHHhHHhCCCCeEEEEEEec
Q 038651 277 N----------------AIETAAVEKKDCLCFIEAIVH 298 (324)
Q Consensus 277 ~----------------al~~a~~~~~~~p~lIeV~id 298 (324)
+ ++++|+ +.+||.+|++...
T Consensus 172 ~~yVA~~~~~~~~~~~~~i~~A~--~~~Gps~I~~~sp 207 (300)
T PRK11864 172 VPYVATASIAYPEDFIRKLKKAK--EIRGFKFIHLLAP 207 (300)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHH--hCCCCEEEEEeCC
Confidence 8 788885 7899999998753
No 111
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=97.82 E-value=6.1e-05 Score=66.81 Aligned_cols=84 Identities=13% Similarity=0.234 Sum_probs=55.5
Q ss_pred CCCeEEEecCchHHh--hhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhh------hCCC-C--C-CCCCCCHHHHHHHH
Q 038651 208 GNTAVIAETGDSWFN--CQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEI------HDGP-Y--N-VIENWNYTGLVEAF 275 (324)
Q Consensus 208 ~~~~vv~d~G~~~~~--~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~------~~~~-~--~-~l~~~df~~lA~a~ 275 (324)
++..|++..||+.+. +. .++|.+|.++++|+++ |+||++|++.... .... | . .....|+.++.+++
T Consensus 96 ~~~~vv~~~GDG~~~eG~~-~Eal~~A~~~~~~li~-vvdnN~~~~~~~~~~~~~~~~a~G~~~~~~vdG~d~~~l~~a~ 173 (195)
T cd02007 96 KKRKVIAVIGDGALTGGMA-FEALNNAGYLKSNMIV-ILNDNEMSISPNVGTPGNLFEELGFRYIGPVDGHNIEALIKVL 173 (195)
T ss_pred CCCeEEEEEcccccccChH-HHHHHHHHHhCCCEEE-EEECCCcccCCCCCCHHHHHHhcCCCccceECCCCHHHHHHHH
Confidence 467899999999875 44 3899999999888877 6666677653210 0111 1 1 12334677666654
Q ss_pred HHHHHHhHHhCCCCeEEEEEEecC
Q 038651 276 QNAIETAAVEKKDCLCFIEAIVHK 299 (324)
Q Consensus 276 G~al~~a~~~~~~~p~lIeV~id~ 299 (324)
++++ +.++|++|++.+.+
T Consensus 174 ----~~a~--~~~~P~~I~~~T~k 191 (195)
T cd02007 174 ----KEVK--DLKGPVLLHVVTKK 191 (195)
T ss_pred ----HHHH--hCCCCEEEEEEEec
Confidence 4553 46799999998864
No 112
>COG1880 CdhB CO dehydrogenase/acetyl-CoA synthase epsilon subunit [Energy production and conversion]
Probab=97.81 E-value=3.4e-05 Score=64.90 Aligned_cols=60 Identities=23% Similarity=0.311 Sum_probs=51.3
Q ss_pred hhhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCC------c------------cc-----------cCCc
Q 038651 83 ALLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKG------M------------IV-----------EFAD 133 (324)
Q Consensus 83 ~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg------~------------~l-----------~~aD 133 (324)
.|++||||++++|..+.+..-.+.+.+|+|+.++|++.|...++ + ++ -+.|
T Consensus 31 mIkkAkrPLlivGp~~~dee~~E~~vKi~ekfnipivaTa~~~~~~~~~~i~~~~~~lh~it~~l~Dp~w~G~dg~g~yD 110 (170)
T COG1880 31 MIKKAKRPLLIVGPLALDEELLELAVKIIEKFNIPIVATASSMGNLIGRGIGSEYINLHAITQYLTDPNWPGFDGNGNYD 110 (170)
T ss_pred HHHhcCCceEEecccccCHHHHHHHHHHHHhcCCceEecchhhcchhhcccccchhHHHHHHHHhcCCCCCCcCCCCCcc
Confidence 38999999999999998777889999999999999999976655 2 22 3689
Q ss_pred EEEEEcCcc
Q 038651 134 AYIFVESIF 142 (324)
Q Consensus 134 lvl~lG~~~ 142 (324)
+||++|+..
T Consensus 111 lviflG~~~ 119 (170)
T COG1880 111 LVIFLGSIY 119 (170)
T ss_pred eEEEEeccH
Confidence 999999886
No 113
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=97.14 E-value=0.0016 Score=61.30 Aligned_cols=89 Identities=18% Similarity=0.082 Sum_probs=67.6
Q ss_pred CCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhh--CC---------C-CCCC-CCCCHHHHHHH
Q 038651 208 GNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIH--DG---------P-YNVI-ENWNYTGLVEA 274 (324)
Q Consensus 208 ~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~--~~---------~-~~~l-~~~df~~lA~a 274 (324)
++-.|+...||++.....++.|.-+.|.|.+|++||+||..|++-.-+. .. + .+.. ...|-..+|-+
T Consensus 87 ~~l~Viv~gGDG~~~dIG~~~l~h~~~Rn~dit~iv~DNevYgnTggQ~S~tTp~G~~t~t~p~Gk~~~~k~d~~~la~a 166 (294)
T COG1013 87 PALSVIVIGGDGDAYDIGGNHLIHALRRNHDITYIVVDNEVYGNTGGQASPTTPKGAKTKTTPYGKRSEKKKDPGLLAMA 166 (294)
T ss_pred cCCeEEEEecchhHhhhhhHHHHHHHHcCCCeEEEEECCeecccCCCccCCCCCCCceeeecCCCCCcCCCCCHHHHHHH
Confidence 4557888899996444445889999999999999999999999865432 00 1 1223 44599999999
Q ss_pred HHH----------------HHHHhHHhCCCCeEEEEEEec
Q 038651 275 FQN----------------AIETAAVEKKDCLCFIEAIVH 298 (324)
Q Consensus 275 ~G~----------------al~~a~~~~~~~p~lIeV~id 298 (324)
.|+ .+.+|+ +.+||.+|+|..+
T Consensus 167 ~G~~yVAr~~~~~~~~l~~~i~kA~--~~~Gps~I~v~sP 204 (294)
T COG1013 167 AGATYVARASVGDPKDLTEKIKKAA--EHKGPSFIDVLSP 204 (294)
T ss_pred CCCCeEEEecccCHHHHHHHHHHHH--hccCCeEEEEecC
Confidence 998 677775 7889999999864
No 114
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains. This region is involved in inter subunit contacts []. Pyruvate oxidoreductase (POR) catalyses the final step in the fermentation of carbohydrates in anaerobic microorganisms []. This involves the oxidative decarboxylation of pyruvate with the participation of thiamine followed by the transfer of an acetyl moiety to coenzyme A for the synthesis of acetyl-CoA []. The family also includes pyruvate flavodoxin oxidoreductase as encoded by the nifJ gene in cyanobacterium which is required for growth on molecular nitrogen when iron is limited [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=97.00 E-value=0.0016 Score=59.18 Aligned_cols=117 Identities=18% Similarity=0.121 Sum_probs=78.0
Q ss_pred cCCCC-chHHHH---hhhcCCCC--eEeecCchHHHHHHHHHHhhhcCceEEEEeCCcchHHHHHHHHHHhhcCCcchhh
Q 038651 8 SSPAD-SSSLLD---HLIAEPGS--RDVGCCNELNAGYAADGSARARAVGAYVVTFIVGRLSIINAIAGAYSENFPAATI 81 (324)
Q Consensus 8 ~~pG~-~~~l~d---al~~~~~i--~~i~~rhE~~A~~aAdgYaR~tg~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~I 81 (324)
.+|+. ..++++ .+....++ +++..-+|.+|..||-|-+-...... .+|+|||..=+.=+|..+...++|+++.
T Consensus 13 ~YPiTPstei~e~~~~~~~~~~~~~~~~~~E~E~~A~~~~~GAs~aG~ra~-t~ts~~Gl~lm~e~l~~a~~~~~P~V~~ 91 (230)
T PF01855_consen 13 AYPITPSTEIMEYLAKYIADGGGDAKVVQAESEHAAMEAAIGASAAGARAM-TATSGPGLNLMAEPLYWAAGTELPIVIV 91 (230)
T ss_dssp E--BTTTCHHHHHHHHHHHCCTBB-EEEE-SSHHHHHHHHHHHHHTT--EE-EEEECCHHHHHCCCHHHHHHTT--EEEE
T ss_pred EeCCCCccHHHHHHHHHHHHcCCceEEEEecchHHHHHHHHHHHhcCCceE-EeecCCcccccHhHHHHHHHcCCCEEEE
Confidence 34555 444444 44433455 99999999999999999887633555 5799999988888999999999999887
Q ss_pred hh--------------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCC
Q 038651 82 TA--------------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAK 125 (324)
Q Consensus 82 t~--------------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gk 125 (324)
.. ...+.+|++..+.---..+..-...++||+...||+.-..|.
T Consensus 92 ~~~R~g~~~g~~~~~~q~D~~~~~d~~~~vl~p~~~QEa~d~~~~A~~lAe~~~~PViv~~Dg~ 155 (230)
T PF01855_consen 92 VVQRAGPSPGLSTQPEQDDLMAARDSGWIVLAPSSPQEAYDMTLIAFNLAEKYQTPVIVLFDGF 155 (230)
T ss_dssp EEEB---SSSB--SB-SHHHHHTTTSS-EEEE--SHHHHHHHHHHHHHHHHHHTSEEEEEEECC
T ss_pred EEECCCCCCCCcCcCChhHHHHHHhcCeEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechh
Confidence 21 557778877776533223334466789999999999765443
No 115
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=96.97 E-value=0.0026 Score=61.25 Aligned_cols=87 Identities=15% Similarity=0.115 Sum_probs=65.6
Q ss_pred CeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhh--C---------CCC-CCCCCCCHHHHHHHHHH
Q 038651 210 TAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIH--D---------GPY-NVIENWNYTGLVEAFQN 277 (324)
Q Consensus 210 ~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~--~---------~~~-~~l~~~df~~lA~a~G~ 277 (324)
-.|++..||++..-..++.|.-+.+-+.+|++||+||..|++-.-+. . .++ .....-|...+|.++|.
T Consensus 152 ~~v~v~gGDG~~ydIG~~~l~ha~~r~~ni~~iv~DNe~Y~nTGgQ~S~tTp~Ga~t~tsp~Gk~~~kkd~~~ia~a~g~ 231 (365)
T cd03377 152 KSVWIIGGDGWAYDIGYGGLDHVLASGENVNILVLDTEVYSNTGGQASKATPLGAVAKFAAAGKRTGKKDLGMIAMSYGN 231 (365)
T ss_pred cceEEEecchhhhccchhhHHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCcCccCCCCCCCCCcCHHHHHHHcCC
Confidence 35677789886433345889999999999999999999999753221 0 011 23345799999999987
Q ss_pred -----------------HHHHhHHhCCCCeEEEEEEec
Q 038651 278 -----------------AIETAAVEKKDCLCFIEAIVH 298 (324)
Q Consensus 278 -----------------al~~a~~~~~~~p~lIeV~id 298 (324)
++++|+ +.+||.+|+|...
T Consensus 232 ~YVA~~s~~~~~~~~~~~i~eA~--~~~Gps~I~v~sP 267 (365)
T cd03377 232 VYVAQIALGANDNQTLKAFREAE--AYDGPSLIIAYSP 267 (365)
T ss_pred CEEEEEecccCHHHHHHHHHHHh--cCCCCEEEEEEcc
Confidence 777785 7899999999874
No 116
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=96.94 E-value=0.00053 Score=64.86 Aligned_cols=88 Identities=19% Similarity=0.175 Sum_probs=57.7
Q ss_pred CCCeEEEecCchHHhhhHH-HHHHHHHHhCCCeEEEEEeCCchhhhhhh--h--CC-------CCC----CCCCCCHHHH
Q 038651 208 GNTAVIAETGDSWFNCQKD-VDVSTMLRCEQKNIIFLINNGNYTIEVEI--H--DG-------PYN----VIENWNYTGL 271 (324)
Q Consensus 208 ~~~~vv~d~G~~~~~~~~~-qEL~Ta~r~~lpviivV~NN~~yg~~~~~--~--~~-------~~~----~l~~~df~~l 271 (324)
.+.++++-.||++..-..+ .-|--|..++|||++||-||+ |++--.. + .. .|. .+...|..++
T Consensus 122 ~~~v~v~~~GDga~~qG~~~EalN~A~~~~lPvifvveNN~-~aist~~~~~~~~~~~~~~a~~~gip~~~VDG~D~~av 200 (300)
T PF00676_consen 122 KDGVVVCFFGDGATSQGDFHEALNLAALWKLPVIFVVENNQ-YAISTPTEEQTASPDIADRAKGYGIPGIRVDGNDVEAV 200 (300)
T ss_dssp SSEEEEEEEETGGGGSHHHHHHHHHHHHTTTSEEEEEEEES-EETTEEHHHHCSSSTSGGGGGGTTSEEEEEETTSHHHH
T ss_pred CceeEEEEecCcccccCccHHHHHHHhhccCCeEEEEecCC-cccccCccccccccchhhhhhccCCcEEEECCEeHHHH
Confidence 5667788889887433222 557788899999976666665 5553211 1 11 110 1235689999
Q ss_pred HHHHHHHHHHhHHhCCCCeEEEEEEec
Q 038651 272 VEAFQNAIETAAVEKKDCLCFIEAIVH 298 (324)
Q Consensus 272 A~a~G~al~~a~~~~~~~p~lIeV~id 298 (324)
.+++..|++.+. +.++|+|||+.+-
T Consensus 201 ~~a~~~A~~~~R--~g~gP~lie~~ty 225 (300)
T PF00676_consen 201 YEAAKEAVEYAR--AGKGPVLIEAVTY 225 (300)
T ss_dssp HHHHHHHHHHHH--TTT--EEEEEEE-
T ss_pred HHHHHHHHHHHh--cCCCCEEEEEeec
Confidence 998888999885 7789999999984
No 117
>PF02552 CO_dh: CO dehydrogenase beta subunit/acetyl-CoA synthase epsilon subunit; InterPro: IPR003704 Carbon monoxide dehydrogenase (Cdh) from Methanosarcina mazei (Methanosarcina frisia) Go1 is a Ni2+-, Fe2+-, and S2-containing alpha2beta2 heterotetramer []. The CO dehydrogenase enzyme complex from Methanosarcina thermophila contains a corrinoid/iron-sulphur enzyme composed of two subunits (delta and gamma) []. This family consists of carbon monoxide dehydrogenase I/II beta subunit 1.2.99.2 from EC and CO dehydrogenase (acetyl-CoA synthase epsilon subunit).; GO: 0019385 methanogenesis, from acetate; PDB: 3CF4_G 1YTL_B.
Probab=96.51 E-value=0.0033 Score=54.28 Aligned_cols=60 Identities=20% Similarity=0.173 Sum_probs=42.4
Q ss_pred hhhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecC-CCCCc--------------cc-----------cCCcEEE
Q 038651 83 ALLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMP-SAKGM--------------IV-----------EFADAYI 136 (324)
Q Consensus 83 ~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~-~gkg~--------------~l-----------~~aDlvl 136 (324)
.|++||||++++|..+.+..-.++........++|++.|. +.+++ .+ .+.|++|
T Consensus 30 ~i~kAKrPllvvGp~vl~~~~~~~~~k~~~~~~i~~~at~~~~~~~~d~~~ky~~~~~~~~l~~p~w~g~~g~g~~Dl~i 109 (167)
T PF02552_consen 30 MIKKAKRPLLVVGPLVLWDWNEEAIEKAIAKKNIPIAATGFNIIGMPDYRPKYPKIEPENELNDPHWNGTDGHGNYDLVI 109 (167)
T ss_dssp HHHHSSSEEEEE-STT--HHHHHHHHHHHHCCTSEEEEETCCHCCHCSSGCCE-HHHHHHHCCSTT--TTTSS---SEEE
T ss_pred HHHhcCCCEEEeCCcccchhHHHHHHHHHHHcCcceeecccccccccccccccccccHHHhcCCCCCCccccCCcccEEE
Confidence 3899999999999999875556677778888999999886 55555 12 3789999
Q ss_pred EEcCcc
Q 038651 137 FVESIF 142 (324)
Q Consensus 137 ~lG~~~ 142 (324)
++|...
T Consensus 110 FiGv~~ 115 (167)
T PF02552_consen 110 FIGVHC 115 (167)
T ss_dssp EES--H
T ss_pred EecchH
Confidence 999875
No 118
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=96.45 E-value=0.011 Score=57.38 Aligned_cols=87 Identities=17% Similarity=0.101 Sum_probs=58.3
Q ss_pred CCCeEEEecCchHHhhhHH-HHHHHHHHhCCCeEEEEEeCCchhhhhhh--h--------CCCC---CCCCCCCHHHHHH
Q 038651 208 GNTAVIAETGDSWFNCQKD-VDVSTMLRCEQKNIIFLINNGNYTIEVEI--H--------DGPY---NVIENWNYTGLVE 273 (324)
Q Consensus 208 ~~~~vv~d~G~~~~~~~~~-qEL~Ta~r~~lpviivV~NN~~yg~~~~~--~--------~~~~---~~l~~~df~~lA~ 273 (324)
.+.++++..||+...-..+ .-|.-|..++||+++||-||+ |++--.. + ...+ ..+...|..++.+
T Consensus 159 ~~~v~v~~~GDGa~~eG~~~Ealn~A~~~~lPvvfvveNN~-~aist~~~~~~~~~~~~~~~~~~p~~~VDG~D~~av~~ 237 (362)
T PLN02269 159 EENVAFALYGDGAANQGQLFEALNIAALWDLPVIFVCENNH-YGMGTAEWRAAKSPAYYKRGDYVPGLKVDGMDVLAVKQ 237 (362)
T ss_pred CCCeEEEEECCCCcccCHHHHHHHHhhccCcCEEEEEeCCC-EeccCchhhhccchHHHHhhcCCCeEEECCCCHHHHHH
Confidence 5677888888876432222 446667888999777766666 8753211 1 0111 1234579999999
Q ss_pred HHHHHHHHhHHhCCCCeEEEEEEec
Q 038651 274 AFQNAIETAAVEKKDCLCFIEAIVH 298 (324)
Q Consensus 274 a~G~al~~a~~~~~~~p~lIeV~id 298 (324)
++..+++.+. + ++|+|||+.+-
T Consensus 238 a~~~A~~~aR--~-~gP~lIe~~ty 259 (362)
T PLN02269 238 ACKFAKEHAL--S-NGPIVLEMDTY 259 (362)
T ss_pred HHHHHHHHHH--h-CCCEEEEEecC
Confidence 9988888885 6 89999999874
No 119
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=96.44 E-value=0.013 Score=56.73 Aligned_cols=118 Identities=14% Similarity=0.066 Sum_probs=86.7
Q ss_pred CcCCCC-chHHHHhhhc---CCCCeEeecCchHHHHHHHHHHhhhcCceEEEEeCCcchHHHHHHHHHHhhcCCcchhhh
Q 038651 7 SSSPAD-SSSLLDHLIA---EPGSRDVGCCNELNAGYAADGSARARAVGAYVVTFIVGRLSIINAIAGAYSENFPAATIT 82 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~---~~~i~~i~~rhE~~A~~aAdgYaR~tg~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It 82 (324)
.++|+. ..++++.|.+ .-+..|+..-+|.+|..||-|-+-.... ++.+|||||.+=+.-++.-|...++|++++-
T Consensus 26 a~YPiTPsTeI~e~la~~~~~~~~~~vq~E~E~aA~~~a~GAs~aG~R-a~taTSg~Gl~lm~E~l~~a~~~e~P~v~v~ 104 (352)
T PRK07119 26 FGYPITPQSEIPEYMSRRLPEVGGVFVQAESEVAAINMVYGAAATGKR-VMTSSSSPGISLKQEGISYLAGAELPCVIVN 104 (352)
T ss_pred EEeCCCCchHHHHHHHHHHHHhCCEEEeeCcHHHHHHHHHHHHhhCCC-EEeecCcchHHHHHHHHHHHHHccCCEEEEE
Confidence 356777 6666666643 2357899999999999999998876445 4557899999999999999999999988761
Q ss_pred h--------------------hh-----cCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCC
Q 038651 83 A--------------------LL-----KAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAK 125 (324)
Q Consensus 83 ~--------------------L~-----~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gk 125 (324)
. +. .+.+|++....----.+..-+.-++||+.++||+.-..+.
T Consensus 105 v~R~~p~~g~t~~eq~D~~~~~~~~ghgd~~~~vl~p~~~qEa~d~~~~Af~lAE~~~~PViv~~D~~ 172 (352)
T PRK07119 105 IMRGGPGLGNIQPSQGDYFQAVKGGGHGDYRLIVLAPSSVQEMVDLTMLAFDLADKYRNPVMVLGDGV 172 (352)
T ss_pred eccCCCCCCCCcchhHHHHHHHhcCCCCCcceEEEeCCCHHHHHHHHHHHHHHHHHhCCCEEEEcchh
Confidence 1 22 3446666654432223344567789999999999877663
No 120
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and supporting flux through TCA cycles in either the forward or reverse directions.
Probab=96.26 E-value=0.01 Score=60.98 Aligned_cols=118 Identities=22% Similarity=0.152 Sum_probs=86.0
Q ss_pred CcCCCC-chHHHHhhhcC---CCCeEeecCchHHHHHHHHHHhhhcCceEEEEeCCcchHHHHHHHHHHhhcCCcchhhh
Q 038651 7 SSSPAD-SSSLLDHLIAE---PGSRDVGCCNELNAGYAADGSARARAVGAYVVTFIVGRLSIINAIAGAYSENFPAATIT 82 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~---~~i~~i~~rhE~~A~~aAdgYaR~tg~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It 82 (324)
+++|+. ...+++.|.+. .++.++.+-+|-+|..||-|-+-+... ++.+|+|||..=+.=++.-|...++|++++.
T Consensus 215 ~~YPiTPsTei~e~la~~~~~~~~~~~q~E~E~aA~~~a~GAs~aG~R-a~taTSg~Gl~lm~E~l~~a~~~~~P~Vi~~ 293 (562)
T TIGR03710 215 AAYPITPASDILEFLAKHLKKFGVVVVQAEDEIAAINMAIGASYAGAR-AMTATSGPGFALMTEALGLAGMTETPLVIVD 293 (562)
T ss_pred cccCCCChhHHHHHHHHhhhhhCcEEEeeccHHHHHHHHHhHHhcCCc-eeecCCCCChhHhHHHHhHHHhccCCEEEEE
Confidence 567777 77776666542 379999999999999999997766335 5567999999888889999999999998883
Q ss_pred h-----------------hhcC--------CCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCC
Q 038651 83 A-----------------LLKA--------VKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAK 125 (324)
Q Consensus 83 ~-----------------L~~A--------krPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gk 125 (324)
+ +..+ .+|++..+.----.+...+.-++||+...||+.-..+.
T Consensus 294 ~~R~gpstg~~t~~eq~D~~~~~~~~hgd~~~ivl~p~~~qEa~d~~~~Af~lAe~~~~PViv~~D~~ 361 (562)
T TIGR03710 294 VQRGGPSTGLPTKTEQSDLLFALYGGHGEFPRIVLAPGSPEECFYLAIEAFNLAEKYQTPVIVLSDQY 361 (562)
T ss_pred cccCCCCCCCCCCccHHHHHHHhcCCCCCcCceEEcCCCHHHHHHHHHHHHHHHHHhcCCEEEEechH
Confidence 1 1111 25555544322223344566789999999999876654
No 121
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=96.17 E-value=0.0092 Score=62.22 Aligned_cols=45 Identities=16% Similarity=0.269 Sum_probs=35.5
Q ss_pred EecCCCeEEEecCchHH--hhhHHHHHHHHHHhCCCeEEEEEeCCchhh
Q 038651 205 MLSGNTAVIAETGDSWF--NCQKDVDVSTMLRCEQKNIIFLINNGNYTI 251 (324)
Q Consensus 205 ~~~~~~~vv~d~G~~~~--~~~~~qEL~Ta~r~~lpviivV~NN~~yg~ 251 (324)
...++..+++.+||+.+ ++. .+++.+|.++++|+++ |+||++|.+
T Consensus 137 ~~~~~~~v~~v~GDG~~~eG~~-~Eal~~a~~~~~~li~-I~dnN~~~i 183 (641)
T PRK12571 137 LGQPDGDVVAVIGDGSLTAGMA-YEALNNAGAADRRLIV-ILNDNEMSI 183 (641)
T ss_pred HhCCCCeEEEEEeCchhhcchH-HHHHHHHHHhCCCEEE-EEECCCeee
Confidence 34567789999999998 554 4999999999998855 777777764
No 122
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=96.08 E-value=0.024 Score=55.33 Aligned_cols=118 Identities=19% Similarity=0.141 Sum_probs=83.1
Q ss_pred CcCCCC-chHHHHhhhcC---CCCeEeecCchHHHHHHHHHHhhhcCceEEEEeCCcchHHHHHHHHHHhhcCCcchhhh
Q 038651 7 SSSPAD-SSSLLDHLIAE---PGSRDVGCCNELNAGYAADGSARARAVGAYVVTFIVGRLSIINAIAGAYSENFPAATIT 82 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~---~~i~~i~~rhE~~A~~aAdgYaR~tg~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It 82 (324)
+.+|+. ..++++.|.+. -+..++..-+|.+|..||-|-+-.... ++.+|||||..=+.=++.-|...++|++++.
T Consensus 26 a~YPITPsTei~e~la~~~~~~~~~~vq~E~E~aA~~~a~GAs~aG~R-a~TaTSg~Gl~lm~E~~~~a~~~e~P~Viv~ 104 (376)
T PRK08659 26 AGYPITPSTEIAEVMARELPKVGGVFIQMEDEIASMAAVIGASWAGAK-AMTATSGPGFSLMQENIGYAAMTETPCVIVN 104 (376)
T ss_pred EEcCCCChHHHHHHHHHhhhhhCCEEEEeCchHHHHHHHHhHHhhCCC-eEeecCCCcHHHHHHHHHHHHHcCCCEEEEE
Confidence 456777 66666666542 257899999999999999998776435 5667999999999999999999999999883
Q ss_pred h-----------------h---h---cCCCc--EEEECCCCCccchHHHHHHHHHHhCCcEEecCCCC
Q 038651 83 A-----------------L---L---KAVKP--AMIGGPKLSVSKATIAFVELADACGYAFAVMPSAK 125 (324)
Q Consensus 83 ~-----------------L---~---~AkrP--vIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gk 125 (324)
. + . ..+-| ++....----.+.....-++||+.++||+.-..+.
T Consensus 105 ~~R~gp~tg~p~~~~q~D~~~~~~~~hgd~~~ivl~p~~~QEa~d~~~~Af~lAE~~~~PViv~~D~~ 172 (376)
T PRK08659 105 VQRGGPSTGQPTKPAQGDMMQARWGTHGDHPIIALSPSSVQECFDLTIRAFNLAEKYRTPVIVLADEV 172 (376)
T ss_pred eecCCCCCCCCCCcCcHHHHHHhcccCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHCCCEEEEechH
Confidence 1 1 1 12334 43333211112334466789999999999877663
No 123
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=96.08 E-value=0.017 Score=59.60 Aligned_cols=91 Identities=14% Similarity=0.091 Sum_probs=57.6
Q ss_pred cCCCeEEEecCchHHhh-hHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhhC-CCC-C---CCCCCCHHHHHHHHHH---
Q 038651 207 SGNTAVIAETGDSWFNC-QKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIHD-GPY-N---VIENWNYTGLVEAFQN--- 277 (324)
Q Consensus 207 ~~~~~vv~d~G~~~~~~-~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~-~~~-~---~l~~~df~~lA~a~G~--- 277 (324)
..+..+++-.||+.+.- ..+.-|..|..+++|+++|+ ||++|++-..... ..+ . .....|...++++||.
T Consensus 133 ~~~~~vv~~iGDG~~~eG~~~EAln~A~~~k~~li~Ii-~dN~~si~~~~~~~~~~l~~~~~~~~~~~~~~~~a~G~~~~ 211 (581)
T PRK12315 133 GEKGNIIAVIGDGSLSGGLALEGLNNAAELKSNLIIIV-NDNQMSIAENHGGLYKNLKELRDTNGQSENNLFKAMGLDYR 211 (581)
T ss_pred CCCCeEEEEECchhhhcchHHHHHHHHHhhCCCEEEEE-ECCCCcCCCCCchhhhhhhhhhhcccccHHHHHHhcCCeEE
Confidence 45678889999998644 22366888889998865555 5555765421100 000 0 1112356677788887
Q ss_pred -------------HHHHhHHhCCCCeEEEEEEecCC
Q 038651 278 -------------AIETAAVEKKDCLCFIEAIVHKD 300 (324)
Q Consensus 278 -------------al~~a~~~~~~~p~lIeV~id~~ 300 (324)
++++|. +.++|++|++.+-+-
T Consensus 212 ~v~DG~D~~~l~~a~~~a~--~~~gP~~i~~~T~kG 245 (581)
T PRK12315 212 YVEDGNDIESLIEAFKEVK--DIDHPIVLHIHTLKG 245 (581)
T ss_pred EeeCCCCHHHHHHHHHHHH--hCCCCEEEEEEeecC
Confidence 555554 568999999999763
No 124
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed
Probab=95.96 E-value=0.031 Score=54.56 Aligned_cols=117 Identities=13% Similarity=0.101 Sum_probs=81.3
Q ss_pred CcCCCC-chHHHHhhhc---CCCCeEeecCchHHHHHHHHHHhhhcCceEEEEeCCcchHHHHHHHHHHhhcCCcchhhh
Q 038651 7 SSSPAD-SSSLLDHLIA---EPGSRDVGCCNELNAGYAADGSARARAVGAYVVTFIVGRLSIINAIAGAYSENFPAATIT 82 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~---~~~i~~i~~rhE~~A~~aAdgYaR~tg~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It 82 (324)
+++|+. ..++.+.|.+ .-+..++.+=+|-+|..||-|-+-.... ++.+|||||.+=+.=.+.-|....+|++++.
T Consensus 25 a~YPITPsTeI~e~la~~~~~~g~~~vq~E~E~aA~~~a~GAs~aG~R-a~taTSg~G~~lm~E~~~~a~~~e~P~V~~~ 103 (375)
T PRK09627 25 GGYPITPSSEIAHEMSVLLPKCGGTFIQMEDEISGISVALGASMSGVK-SMTASSGPGISLKAEQIGLGFIAEIPLVIVN 103 (375)
T ss_pred EEeCCCChhHHHHHHHHHHHHcCCEEEEcCCHHHHHHHHHHHHhhCCC-EEeecCCchHHHHhhHHHHHHhccCCEEEEE
Confidence 356666 6666655543 2478999999999999999997766335 5667999999988889999999999999873
Q ss_pred h------------h-----h------cCCCcEEEECCC-CC-ccchHHHHHHHHHHhCCcEEecCCC
Q 038651 83 A------------L-----L------KAVKPAMIGGPK-LS-VSKATIAFVELADACGYAFAVMPSA 124 (324)
Q Consensus 83 ~------------L-----~------~AkrPvIl~G~g-~~-~~~a~~~l~~lae~l~~Pv~tt~~g 124 (324)
. . . ..+-|-|++-.. +. ..+..-+.-++||+..+||+....+
T Consensus 104 ~~R~GpstG~p~~~~q~D~~~~~~~~hgd~~~ivl~p~~~qEa~d~t~~Af~lAE~~~~PViv~~D~ 170 (375)
T PRK09627 104 VMRGGPSTGLPTRVAQGDVNQAKNPTHGDFKSIALAPGSLEEAYTETVRAFNLAERFMTPVFLLLDE 170 (375)
T ss_pred eccCCCcCCCCCccchHHHHHHhcCCCCCcCcEEEeCCCHHHHHHHHHHHHHHHHHHcCceEEecch
Confidence 1 1 0 112233333222 11 1222335568999999999987766
No 125
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=95.85 E-value=0.043 Score=53.83 Aligned_cols=116 Identities=16% Similarity=0.132 Sum_probs=80.7
Q ss_pred CcCCCC-chHHHHhhhcC-----CCCeEeecCchHHHHHHHHHHhhhcCceEEEEeCCcchHHHHHHHHHHhhcCCcchh
Q 038651 7 SSSPAD-SSSLLDHLIAE-----PGSRDVGCCNELNAGYAADGSARARAVGAYVVTFIVGRLSIINAIAGAYSENFPAAT 80 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~-----~~i~~i~~rhE~~A~~aAdgYaR~tg~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~ 80 (324)
+.+|+. ..++.+.|.+. -++.|+.+=+|-+|..||-|-+-+... ++.+|+|||..=+.=+|..|...++|+++
T Consensus 25 a~YPITPsTei~e~la~~~~~G~~~~~~~~~E~E~aA~~~aiGAs~aGaR-a~TaTSg~Gl~lm~E~l~~aa~~~lPiVi 103 (390)
T PRK08366 25 AAYPITPQTSIIEKIAEFIANGEADIQYVPVESEHSAMAACIGASAAGAR-AFTATSAQGLALMHEMLHWAAGARLPIVM 103 (390)
T ss_pred EEECCCChhHHHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHhhCCC-eEeeeCcccHHHHhhHHHHHHhcCCCEEE
Confidence 345666 55555555331 258999999999999999998876435 45579999998888899999999999886
Q ss_pred hhh-------------------hhcCCCcEEEECCCCC-ccchHHHHHHHHHHhCCcEEecCCC
Q 038651 81 ITA-------------------LLKAVKPAMIGGPKLS-VSKATIAFVELADACGYAFAVMPSA 124 (324)
Q Consensus 81 It~-------------------L~~AkrPvIl~G~g~~-~~~a~~~l~~lae~l~~Pv~tt~~g 124 (324)
.-. ...+..-++.+ ..+. ..+...+.-++||+..+||+....+
T Consensus 104 ~~~~R~~p~~~~~~~~q~D~~~~~d~g~i~~~~-~~~QEa~d~t~~Af~lAE~~~~PViv~~Dg 166 (390)
T PRK08366 104 VDVNRAMAPPWSVWDDQTDSLAQRDTGWMQFYA-ENNQEVYDGVLMAFKVAETVNLPAMVVESA 166 (390)
T ss_pred EEeccCCCCCCCCcchhhHHHHHhhcCEEEEeC-CCHHHHHHHHHHHHHHHHHHCCCEEEEecC
Confidence 620 33444433333 2221 1222345667999999999988765
No 126
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=95.80 E-value=0.055 Score=52.22 Aligned_cols=90 Identities=18% Similarity=0.173 Sum_probs=59.5
Q ss_pred ecCCC-eEEEecCchHHhhhHH-HHHHHHHHhCCCeEEEEEeCCchhhh--hhhh--------CCC-C----CCCCCCCH
Q 038651 206 LSGNT-AVIAETGDSWFNCQKD-VDVSTMLRCEQKNIIFLINNGNYTIE--VEIH--------DGP-Y----NVIENWNY 268 (324)
Q Consensus 206 ~~~~~-~vv~d~G~~~~~~~~~-qEL~Ta~r~~lpviivV~NN~~yg~~--~~~~--------~~~-~----~~l~~~df 268 (324)
...++ +.++-.||++..-..+ .-|--|.=|+||++++| +|++|+|- +..+ ... | .....-|+
T Consensus 155 ~~~~~~Va~~~~GDGat~qG~FhEalN~A~v~klPvvf~i-eNN~yAiSvp~~~q~~~~~~~~ra~aygipgv~VDG~D~ 233 (358)
T COG1071 155 RGTKDGVAVAFFGDGATNQGDFHEALNFAAVWKLPVVFVI-ENNQYAISVPRSRQTAAEIIAARAAAYGIPGVRVDGNDV 233 (358)
T ss_pred hCCCCcEEEEEecCCccccchHHHHHHHHHHhcCCEEEEE-ecCCceeecchhhcccchhHHhhhhccCCCeEEECCcCH
Confidence 34344 8888888876433322 44666778999976655 55678763 2212 111 1 11234689
Q ss_pred HHHHHHHHHHHHHhHHhCCCCeEEEEEEec
Q 038651 269 TGLVEAFQNAIETAAVEKKDCLCFIEAIVH 298 (324)
Q Consensus 269 ~~lA~a~G~al~~a~~~~~~~p~lIeV~id 298 (324)
.++-+++.-|.++|. +.++|+|||+.+-
T Consensus 234 ~avy~~~~~A~e~AR--~g~GPtLIE~~tY 261 (358)
T COG1071 234 LAVYEAAKEAVERAR--AGEGPTLIEAVTY 261 (358)
T ss_pred HHHHHHHHHHHHHHH--cCCCCEEEEEEEe
Confidence 999998888999996 7789999999984
No 127
>PLN02790 transketolase
Probab=95.56 E-value=0.045 Score=57.25 Aligned_cols=85 Identities=14% Similarity=0.073 Sum_probs=53.5
Q ss_pred CCeEEEecCchHHhhhHH-HHHHHHHHhCCCeEEEEEeCCchhhhhhhhC--------------CCCCCCCC--CCHHHH
Q 038651 209 NTAVIAETGDSWFNCQKD-VDVSTMLRCEQKNIIFLINNGNYTIEVEIHD--------------GPYNVIEN--WNYTGL 271 (324)
Q Consensus 209 ~~~vv~d~G~~~~~~~~~-qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~--------------~~~~~l~~--~df~~l 271 (324)
+..+++-.||+.+.-... .-+..|..++||-+|+|+||+.|.+-..... -.|..... -|+.++
T Consensus 137 ~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli~i~d~N~~~i~~~~~~~~~~~~~~~f~a~G~~~~~vdgg~hd~~~l 216 (654)
T PLN02790 137 DHYTYCILGDGCQMEGISNEAASLAGHWGLGKLIVLYDDNHISIDGDTEIAFTEDVDKRYEALGWHTIWVKNGNTDYDEI 216 (654)
T ss_pred CCEEEEEECcCcccchHHHHHHHHHHHhCCCCEEEEEecCCccccCCcccccchhHHHHHHHcCCeEEEECCCCCCHHHH
Confidence 467888899987633322 5578899999999999999999976322110 00101111 355555
Q ss_pred HHHHHHHHHHhHHhCCCCeEEEEEEec
Q 038651 272 VEAFQNAIETAAVEKKDCLCFIEAIVH 298 (324)
Q Consensus 272 A~a~G~al~~a~~~~~~~p~lIeV~id 298 (324)
.++| ++|. ...++|++|++.+-
T Consensus 217 ~~a~----~~a~-~~~~~P~lI~~~T~ 238 (654)
T PLN02790 217 RAAI----KEAK-AVTDKPTLIKVTTT 238 (654)
T ss_pred HHHH----HHHH-hcCCCeEEEEEEEe
Confidence 5444 4443 12679999999985
No 128
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=95.45 E-value=0.031 Score=51.90 Aligned_cols=89 Identities=16% Similarity=0.101 Sum_probs=52.4
Q ss_pred CCeEEEecCchHHh-hhHHHHHHH-HHHhCCCe--EEEEEeCCchhhhhhh--h-CCCC-------CC-----CCCCCHH
Q 038651 209 NTAVIAETGDSWFN-CQKDVDVST-MLRCEQKN--IIFLINNGNYTIEVEI--H-DGPY-------NV-----IENWNYT 269 (324)
Q Consensus 209 ~~~vv~d~G~~~~~-~~~~qEL~T-a~r~~lpv--iivV~NN~~yg~~~~~--~-~~~~-------~~-----l~~~df~ 269 (324)
+.+.++-.||+.+. -..+.|--. |.=.++|+ +|+|+.|++|++--.. + ...| .+ ...-|..
T Consensus 140 ~~v~v~~~GDgA~~~qG~~~EalNlA~l~~lp~gg~ifvveNNq~g~sT~~~~~~~~~~~~~~a~~~gip~~~VdG~D~~ 219 (265)
T cd02016 140 KVLPILIHGDAAFAGQGVVYETLNLSNLPGYTTGGTIHIVVNNQIGFTTDPRDSRSSPYCTDVAKMIGAPIFHVNGDDPE 219 (265)
T ss_pred CeEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEEecHHHhcccccHHHHHeecCCCEEEEcCCCHH
Confidence 55677888888752 222344333 44457772 4444445667653211 1 1111 11 1245777
Q ss_pred HHHHHHHHHHHHhHHhCCCCeEEEEEEecC
Q 038651 270 GLVEAFQNAIETAAVEKKDCLCFIEAIVHK 299 (324)
Q Consensus 270 ~lA~a~G~al~~a~~~~~~~p~lIeV~id~ 299 (324)
++.+++..|++.+. +.++|+|||+.+-+
T Consensus 220 aV~~a~~~A~~~~r--~g~gp~lIe~~tYR 247 (265)
T cd02016 220 AVVRATRLALEYRQ--KFKKDVVIDLVCYR 247 (265)
T ss_pred HHHHHHHHHHHHHH--hcCCCEEEEEEEec
Confidence 77777776888775 77899999999855
No 129
>PRK12753 transketolase; Reviewed
Probab=95.08 E-value=0.074 Score=55.73 Aligned_cols=86 Identities=15% Similarity=0.009 Sum_probs=53.2
Q ss_pred CCeEEEecCchHHhhhHH-HHHHHHHHhCCCeEEEEEeCCchhhhhhhhC--------------CCCC-CCCCCCHHHHH
Q 038651 209 NTAVIAETGDSWFNCQKD-VDVSTMLRCEQKNIIFLINNGNYTIEVEIHD--------------GPYN-VIENWNYTGLV 272 (324)
Q Consensus 209 ~~~vv~d~G~~~~~~~~~-qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~--------------~~~~-~l~~~df~~lA 272 (324)
+..+++..||+...-... .-+..|..++||-.|+|+||++|.+--.... -.+. .+..-|+.++.
T Consensus 146 ~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivd~N~~~i~~~~~~~~~~~~~~~f~a~Gw~~~~~vDGhD~~~i~ 225 (663)
T PRK12753 146 DHYTYVFMGDGCLMEGISHEVCSLAGTLGLGKLIGFYDHNGISIDGETEGWFTDDTAKRFEAYHWHVIHEIDGHDPQAIK 225 (663)
T ss_pred CCEEEEEECcCccccHHHHHHHHHHHHHCCCCEEEEEECCCCcCCCChhhhcChhHHHHHHHcCCeEEceeCCCCHHHHH
Confidence 467888889887543322 4577789999998898999999876322110 0011 12223454444
Q ss_pred HHHHHHHHHhHHhCCCCeEEEEEEecC
Q 038651 273 EAFQNAIETAAVEKKDCLCFIEAIVHK 299 (324)
Q Consensus 273 ~a~G~al~~a~~~~~~~p~lIeV~id~ 299 (324)
++| ++|. ...++|++|++.+-.
T Consensus 226 ~a~----~~a~-~~~~~P~~I~~~T~k 247 (663)
T PRK12753 226 EAI----LEAQ-SVKDKPSLIICRTII 247 (663)
T ss_pred HHH----HHHH-HCCCCeEEEEEEEee
Confidence 444 4443 235789999999853
No 130
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=95.01 E-value=0.074 Score=55.04 Aligned_cols=117 Identities=19% Similarity=0.126 Sum_probs=80.1
Q ss_pred CcCCCC-chHHHHhhhcC---CCCeEeecCchHHHHHHHHHHhhhcCceEEEEeCCcchHHHHHHHHHHh--hcCCcchh
Q 038651 7 SSSPAD-SSSLLDHLIAE---PGSRDVGCCNELNAGYAADGSARARAVGAYVVTFIVGRLSIINAIAGAY--SENFPAAT 80 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~---~~i~~i~~rhE~~A~~aAdgYaR~tg~gv~~~t~GpG~~N~~tgla~A~--~d~~Pvl~ 80 (324)
+++||. ..++++.|.+. .++.++..-+|.+|..||-|-+-. |.=++.+|+|||..=+.=.|..+. .-+.|+++
T Consensus 24 ~~YPiTP~t~i~e~l~~~~~~~~~~~~~~~~E~~a~~~~~GAs~a-G~ra~t~ts~~Gl~~~~e~l~~~~~~g~~~~iV~ 102 (595)
T TIGR03336 24 AAYPGTPSSEITDTLAKVAKRAGVYFEWSVNEKVAVEVAAGAAWS-GLRAFCTMKHVGLNVAADPLMTLAYTGVKGGLVV 102 (595)
T ss_pred EecCCCCHHHHHHHHHHhhhhccEEEEECcCHHHHHHHHHHHHhc-CcceEEEccCCchhhhHHHhhhhhhhcCcCceEE
Confidence 478999 88888887652 368899999999999999987664 544455689999744333443333 33677777
Q ss_pred hhh-----------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCC
Q 038651 81 ITA-----------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSA 124 (324)
Q Consensus 81 It~-----------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~g 124 (324)
+.+ ...++-|++..+.----.+...+.-++||+.++||+.-..+
T Consensus 103 ~~~~~~gp~~~~~~q~d~~~~~~~~~~vl~p~~~qE~~d~~~~Af~lae~~~~PV~v~~d~ 163 (595)
T TIGR03336 103 VVADDPSMHSSQNEQDTRHYAKFAKIPCLEPSTPQEAKDMVKYAFELSEKFGLPVILRPTT 163 (595)
T ss_pred EEccCCCCccchhhHhHHHHHHhcCCeEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEEee
Confidence 732 44578886666552222344556778999999999876543
No 131
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=94.91 E-value=0.081 Score=55.37 Aligned_cols=83 Identities=18% Similarity=0.120 Sum_probs=52.9
Q ss_pred CCeEEEecCchHHhhhHH-HHHHHHHHhCCCeEEEEEeCCchhhhhhhhCCCCCCCCCCCHHHHHHHHHH----------
Q 038651 209 NTAVIAETGDSWFNCQKD-VDVSTMLRCEQKNIIFLINNGNYTIEVEIHDGPYNVIENWNYTGLVEAFQN---------- 277 (324)
Q Consensus 209 ~~~vv~d~G~~~~~~~~~-qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~~~~~~l~~~df~~lA~a~G~---------- 277 (324)
+..+++-.||+...-... .-+..|..++||-+|+|++|++|.+--.... ....|+.+..++||.
T Consensus 142 ~~~v~~~~GDG~l~EG~~~EA~~~A~~~~L~nLi~ivd~N~~~i~~~~~~-----~~~~~~~~~~~a~Gw~~~~v~DG~D 216 (653)
T TIGR00232 142 DHYTYVFVGDGCLQEGISYEVASLAGHLKLGKLIVLYDSNRISIDGAVDG-----SFTEDVAKRFEAYGWEVLEVEDGHD 216 (653)
T ss_pred CCEEEEEEccccccccHHHHHHHHHHHhCCCcEEEEEeCCCeeecccccc-----ccCccHHHHHHhcCCcEEEeCCCCC
Confidence 566788888887533222 4477788999999999999999876322110 011244455555544
Q ss_pred ------HHHHhHHhCC-CCeEEEEEEec
Q 038651 278 ------AIETAAVEKK-DCLCFIEAIVH 298 (324)
Q Consensus 278 ------al~~a~~~~~-~~p~lIeV~id 298 (324)
|+++|. +. ++|++|++.+-
T Consensus 217 ~~ai~~A~~~a~--~~~~~P~~I~~~T~ 242 (653)
T TIGR00232 217 LAAIDAAIEEAK--ASKDKPTLIEVTTT 242 (653)
T ss_pred HHHHHHHHHHHH--hCCCCCEEEEEEee
Confidence 344443 33 58999999984
No 132
>PRK12754 transketolase; Reviewed
Probab=94.81 E-value=0.11 Score=54.36 Aligned_cols=84 Identities=14% Similarity=0.023 Sum_probs=54.5
Q ss_pred CCeEEEecCchHHhhhHH-HHHHHHHHhCCCeEEEEEeCCchhhhhhhhCCCCCCCCCCCHHHHHHHHHH----------
Q 038651 209 NTAVIAETGDSWFNCQKD-VDVSTMLRCEQKNIIFLINNGNYTIEVEIHDGPYNVIENWNYTGLVEAFQN---------- 277 (324)
Q Consensus 209 ~~~vv~d~G~~~~~~~~~-qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~~~~~~l~~~df~~lA~a~G~---------- 277 (324)
+..+++-+||+...-... .-+..|..++||.+|+|++|++|.+.-... +....|..+-.++||.
T Consensus 146 ~~~v~~~~GDGel~EG~~~EA~~~A~~~kL~nLi~ivD~N~~~idg~~~-----~~~~~~~~~r~~a~Gw~vi~vvDG~D 220 (663)
T PRK12754 146 DHYTYAFMGDGCMMEGISHEVCSLAGTLKLGKLIAFYDDNGISIDGHVE-----GWFTDDTAMRFEAYGWHVIRGIDGHD 220 (663)
T ss_pred CCEEEEEECcchhhchHHHHHHHHHHHhCCCCEEEEEEcCCCccCcchh-----hccCccHHHHHHhcCCeEEeeECCCC
Confidence 456788889887643222 457779999999988888998887632211 0012355555555554
Q ss_pred ------HHHHhHHhCCCCeEEEEEEec
Q 038651 278 ------AIETAAVEKKDCLCFIEAIVH 298 (324)
Q Consensus 278 ------al~~a~~~~~~~p~lIeV~id 298 (324)
|+++|. ...++|++|++.+-
T Consensus 221 ~~ai~~A~~~a~-~~~~~Pt~I~~~T~ 246 (663)
T PRK12754 221 ADSIKRAVEEAR-AVTDKPSLLMCKTI 246 (663)
T ss_pred HHHHHHHHHHHH-hcCCCCEEEEEEee
Confidence 344443 23589999999985
No 133
>PTZ00089 transketolase; Provisional
Probab=94.77 E-value=0.13 Score=53.95 Aligned_cols=85 Identities=18% Similarity=0.178 Sum_probs=54.1
Q ss_pred CCeEEEecCchHHhhhHH-HHHHHHHHhCCCeEEEEEeCCchhhhhhhh-----------CC---CCCCC-CCC-CHHHH
Q 038651 209 NTAVIAETGDSWFNCQKD-VDVSTMLRCEQKNIIFLINNGNYTIEVEIH-----------DG---PYNVI-ENW-NYTGL 271 (324)
Q Consensus 209 ~~~vv~d~G~~~~~~~~~-qEL~Ta~r~~lpviivV~NN~~yg~~~~~~-----------~~---~~~~l-~~~-df~~l 271 (324)
+..+++-+||+.+.-... .-+..|..++||..|+|+||++|.+-.... .. .|... ..- |+.++
T Consensus 148 ~~~v~~v~GDG~l~eG~~~EAl~~A~~~~L~nLi~i~d~N~~~i~~~~~~~~~~~~~~~f~a~G~~~i~v~dG~~D~~~l 227 (661)
T PTZ00089 148 DNYVYVICGDGCLQEGVSQEALSLAGHLGLEKLIVLYDDNKITIDGNTDLSFTEDVEKKYEAYGWHVIEVDNGNTDFDGL 227 (661)
T ss_pred CCEEEEEECccchhhHHHHHHHHHHHHhCCCCEEEEEECCCcccccCcccccCccHHHHHHhcCCcEEEeCCCCCCHHHH
Confidence 567888899987643322 557788899999999999999997632211 00 11111 223 66666
Q ss_pred HHHHHHHHHHhHHhCCCCeEEEEEEec
Q 038651 272 VEAFQNAIETAAVEKKDCLCFIEAIVH 298 (324)
Q Consensus 272 A~a~G~al~~a~~~~~~~p~lIeV~id 298 (324)
.++| ++|. ...++|++|++.+-
T Consensus 228 ~~a~----~~a~-~~~~~P~~I~~~T~ 249 (661)
T PTZ00089 228 RKAI----EEAK-KSKGKPKLIIVKTT 249 (661)
T ss_pred HHHH----HHHH-hcCCCcEEEEEEee
Confidence 6655 3443 12378999999984
No 134
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed
Probab=94.73 E-value=0.15 Score=50.40 Aligned_cols=117 Identities=14% Similarity=0.020 Sum_probs=81.6
Q ss_pred cCCCC-chHHHHhhhc---C--CCCeEeecCchHHHHHHHHHHhhhcCceEEEEeCCcchHHHHHHHHHHhhcCCcchhh
Q 038651 8 SSPAD-SSSLLDHLIA---E--PGSRDVGCCNELNAGYAADGSARARAVGAYVVTFIVGRLSIINAIAGAYSENFPAATI 81 (324)
Q Consensus 8 ~~pG~-~~~l~dal~~---~--~~i~~i~~rhE~~A~~aAdgYaR~tg~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~I 81 (324)
.+|+. ..++.+.+.+ + -+..||..-+|.+|..||-|-+-+... ++..|+|||..=+.=+|..|...++|+++.
T Consensus 33 ~YPITPsTeI~e~la~~~~~g~~~~~~vq~E~E~~A~~~~~GAs~aGaR-a~TaTS~~Gl~lm~E~l~~aa~~~~P~V~~ 111 (407)
T PRK09622 33 AYPITPSTPIVQNYGSFKANGYVDGEFVMVESEHAAMSACVGAAAAGGR-VATATSSQGLALMVEVLYQASGMRLPIVLN 111 (407)
T ss_pred EECCCCccHHHHHHHHHhhCCCcCcEEEeeccHHHHHHHHHHHHhhCcC-EEeecCcchHHHHhhHHHHHHHhhCCEEEE
Confidence 45666 5555555532 2 146899999999999999997765335 566799999988888999999999996665
Q ss_pred hh-------------------hhcCCCcEEEECCCCCccchHHHHHHHHHHh--CCcEEecCCCC
Q 038651 82 TA-------------------LLKAVKPAMIGGPKLSVSKATIAFVELADAC--GYAFAVMPSAK 125 (324)
Q Consensus 82 t~-------------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l--~~Pv~tt~~gk 125 (324)
.. .+.+..+++....----.+..-+.-++||+. .+||+.-..|.
T Consensus 112 ~~~R~~~~~~~i~~d~~D~~~~r~~g~ivl~p~s~QEa~d~~~~Af~lAE~~~~~~Pviv~~Dg~ 176 (407)
T PRK09622 112 LVNRALAAPLNVNGDHSDMYLSRDSGWISLCTCNPQEAYDFTLMAFKIAEDQKVRLPVIVNQDGF 176 (407)
T ss_pred EeccccCCCcCCCchHHHHHHHhcCCeEEEeCCCHHHHHHHHHHHHHHHHHhccCCCEEEEechh
Confidence 21 3445555554433211123344566799998 99999887776
No 135
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed
Probab=94.72 E-value=0.14 Score=50.35 Aligned_cols=114 Identities=14% Similarity=0.024 Sum_probs=79.6
Q ss_pred cCCCC-chHHHHhhhc-----CCCCeEeecCchHHHHHHHHHHhhhcCceEEEEeCCcchHHHHHHHHHHhhcCCcchhh
Q 038651 8 SSPAD-SSSLLDHLIA-----EPGSRDVGCCNELNAGYAADGSARARAVGAYVVTFIVGRLSIINAIAGAYSENFPAATI 81 (324)
Q Consensus 8 ~~pG~-~~~l~dal~~-----~~~i~~i~~rhE~~A~~aAdgYaR~tg~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~I 81 (324)
++|+. -.++.+.+.+ .-+.+|+.+-+|.+|..||-|-+-+... ++.+|+|||..=+.=.|.-|...++|+++.
T Consensus 27 ~YPITPsTei~e~la~~~~~g~~~~~~v~~EsE~aA~~~~~GAs~aGaR-a~TaTS~~Gl~lm~E~l~~aag~~lP~V~v 105 (394)
T PRK08367 27 AFPITPSTLVPEKISEFVANGELDAEFIKVESEHSAISACVGASAAGVR-TFTATASQGLALMHEVLFIAAGMRLPIVMA 105 (394)
T ss_pred EECCCCccHHHHHHHHHhhcCCcCeEEEEeCCHHHHHHHHHHHHhhCCC-eEeeeccchHHHHhhHHHHHHHccCCEEEE
Confidence 45666 5555555543 2358899999999999999998776435 556799999998889999999999998876
Q ss_pred hh-------------------hhcCCCcEEEECCCCCccchH---HHHHHHHH--HhCCcEEecCCCC
Q 038651 82 TA-------------------LLKAVKPAMIGGPKLSVSKAT---IAFVELAD--ACGYAFAVMPSAK 125 (324)
Q Consensus 82 t~-------------------L~~AkrPvIl~G~g~~~~~a~---~~l~~lae--~l~~Pv~tt~~gk 125 (324)
-+ .....+.++++ ..+ .++. -..-++|| +..+||+....|-
T Consensus 106 v~~R~~~~p~~i~~d~~D~~~~rd~g~~~~~a-~~~--QEa~D~~~~Af~lAE~~~~~~Pviv~~Dgf 170 (394)
T PRK08367 106 IGNRALSAPINIWNDWQDTISQRDTGWMQFYA-ENN--QEALDLILIAFKVAEDERVLLPAMVGFDAF 170 (394)
T ss_pred ECCCCCCCCCCcCcchHHHHhccccCeEEEeC-CCH--HHHHHHHHHHHHHHHHhCcCCCEEEEechh
Confidence 31 22334444443 211 2333 34567899 6679999888773
No 136
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=94.45 E-value=0.26 Score=48.01 Aligned_cols=115 Identities=19% Similarity=0.140 Sum_probs=87.4
Q ss_pred CCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcCceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh-----
Q 038651 10 PAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARAVGAYVVTFIVGRLSIINAIAGAYSENFPAATITA----- 83 (324)
Q Consensus 10 pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~----- 83 (324)
|-+ +++.++++....+..++..-.|.+|..|+-|-+.+ |.=+...|+|||.+=+.-++.-|....+|+++.-.
T Consensus 31 Pss~i~e~l~~~~~~~~~~~vq~EsE~~a~s~v~GA~~a-Gar~~TaTSg~Gl~Lm~E~l~~a~~~~~P~Vi~~~~R~~p 109 (365)
T COG0674 31 PSSEIAEYLASWKAKVGGVFVQMESEIGAISAVIGASYA-GARAFTATSGQGLLLMAEALGLAAGTETPLVIVVAQRPLP 109 (365)
T ss_pred CchHHHHHHHHHHhhcCcEEEEeccHHHHHHHHHHHHhh-CcceEeecCCccHHHHHHHHHHHHhccCCeEEEEeccCcC
Confidence 445 67777777654579999999999999999986655 54445579999999999999999999999998821
Q ss_pred ---------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCC
Q 038651 84 ---------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAK 125 (324)
Q Consensus 84 ---------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gk 125 (324)
...+.-|.+++..---..+.....-++||+..+||+.-..+-
T Consensus 110 s~g~p~~~dq~D~~~~r~~g~~~~~~~s~qEa~d~t~~Af~iAe~~~~Pvi~~~D~~ 166 (365)
T COG0674 110 STGLPIKGDQSDLMAARDTGFPILVSASVQEAFDLTLLAFNIAEKVLTPVIVLLDGF 166 (365)
T ss_pred CCcccccccHHHHHHHHccCceEEeeccHHHHHHHHHHHHHHHHHhcCCEEEeeccc
Confidence 455678888888111112233456678999999999877665
No 137
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=93.55 E-value=0.16 Score=56.53 Aligned_cols=86 Identities=12% Similarity=0.080 Sum_probs=63.9
Q ss_pred eEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhh--CC---------CC-CCCCCCCHHHHHHHHHH-
Q 038651 211 AVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIH--DG---------PY-NVIENWNYTGLVEAFQN- 277 (324)
Q Consensus 211 ~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~--~~---------~~-~~l~~~df~~lA~a~G~- 277 (324)
.|++..||++..-..++-|.-+.+.|.++++||+||..|+.-.-+. .. ++ .....-|-..+|.++|.
T Consensus 953 sv~~~~GDG~~~diG~~~l~~~~~r~~~v~~i~~dne~Y~nTggQ~S~~tp~g~~t~~~~~g~~~~kkd~~~~a~~~g~~ 1032 (1165)
T TIGR02176 953 SVWIIGGDGWAYDIGYGGLDHVLASGKDVNVLVMDTEVYSNTGGQSSKATPTGAIAKFAAAGKRTSKKDLGMMAMTYGYV 1032 (1165)
T ss_pred eeEEEecchhhhccCccchHHHHHcCCCeEEEEECCcccccCCCcCCCCCCCcCccccCCCCCCCCCcCHHHHHHHCCCC
Confidence 4677788886322234779999999999999999999998753221 00 11 22345788999999887
Q ss_pred ----------------HHHHhHHhCCCCeEEEEEEec
Q 038651 278 ----------------AIETAAVEKKDCLCFIEAIVH 298 (324)
Q Consensus 278 ----------------al~~a~~~~~~~p~lIeV~id 298 (324)
++.+|+ ..+||.+|++...
T Consensus 1033 yvA~~~~~~~~~~~~~~~~~A~--~~~G~s~i~~~~p 1067 (1165)
T TIGR02176 1033 YVAQVSMGANMQQTLKAFREAE--AYDGPSIVIAYSP 1067 (1165)
T ss_pred EEEEEecccCHHHHHHHHHHHH--cCCCCEEEEEECC
Confidence 777775 7899999999875
No 138
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=93.53 E-value=0.13 Score=55.44 Aligned_cols=88 Identities=16% Similarity=0.064 Sum_probs=56.1
Q ss_pred CCeEEEecCchHH-hhhHHH-HHHHHHHhCCCe--EEEEEeCCchhhhhhhh---CCCC-------CC-----CCCCCHH
Q 038651 209 NTAVIAETGDSWF-NCQKDV-DVSTMLRCEQKN--IIFLINNGNYTIEVEIH---DGPY-------NV-----IENWNYT 269 (324)
Q Consensus 209 ~~~vv~d~G~~~~-~~~~~q-EL~Ta~r~~lpv--iivV~NN~~yg~~~~~~---~~~~-------~~-----l~~~df~ 269 (324)
+.+.++--||++| +-..+. -|--|.-+++|+ +|+|+.|++|++--... ...| .+ +...|..
T Consensus 343 ~~v~v~~~GDgA~agQG~v~EaLNlA~l~~lPvGGtIfvveNNqyg~tT~~~~~~s~~~~sd~Ak~ygiP~~~VDG~D~~ 422 (929)
T TIGR00239 343 KVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQIGFTTNPLDARSTPYCSDLAKMIQAPIFHVNADDPE 422 (929)
T ss_pred ceEEEEEeccccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEEEcHHHhcCccCHHHHheecCCCEEEECCCCHH
Confidence 3566788899886 222233 355567789998 66666667787632111 1111 01 2345777
Q ss_pred HHHHHHHHHHHHhHHhCCCCeEEEEEEec
Q 038651 270 GLVEAFQNAIETAAVEKKDCLCFIEAIVH 298 (324)
Q Consensus 270 ~lA~a~G~al~~a~~~~~~~p~lIeV~id 298 (324)
++.+++..|++.+. +.++|+|||+.+-
T Consensus 423 AV~~a~~~Ave~~r--~g~gPvlIE~~tY 449 (929)
T TIGR00239 423 AVAFATRLAVEYRN--TFKRDVFIDLVGY 449 (929)
T ss_pred HHHHHHHHHHHHHH--hcCCCEEEEEEec
Confidence 77777777888774 6789999999983
No 139
>PF02233 PNTB: NAD(P) transhydrogenase beta subunit; InterPro: IPR012136 NAD(P) transhydrogenase catalyses the transfer of reducing equivalents between NAD(H) and NADP(H), coupled to the translocation of protons across a membrane []. It is an integral membrane protein found in most organisms except for yeasts, plants and some bacterial species. In bacterial species it is located in the cytoplasmic membrane, while in mitochondria it is located in the inner membrane. Under most physiological conditions this enzyme synthesises NADPH, driven by consumption of the proton electrochemical gradient. The resulting NADPH is subsequently used for biosynthetic reactions or the reduction of glutathione. The global structure of this enzyme is similar in all organisms, consisting of three distinct domains, though the polypeptide composition can vary. Domain I binds NAD(+)/NADH, domain II is a hydrophobic membrane-spanning domain, and domain III binds NADP(+)/NADPH. Domain I is composed of two subdomains, both of which form a Rossman fold, while domain III consists of a single Rossman fold where the NADP(+) is flipped relative to the normal orientation of bound nucleotides within the Rossman fold [, , ]. Several residues within these domains are thought to make functionally important interdomain contacts for hydride transfer between these domains []. Proton translocation occurs through domain II and is thought to induce conformational changes which are transmitted across domain III to the site of hydride transfer between domains I and III. This entry represents the beta subunit found in bacterial two-subunit NADP(H) transhydrogenases. This subunit forms domain III and part of the transmembrane domain II. ; GO: 0008750 NAD(P)+ transhydrogenase (AB-specific) activity, 0050661 NADP binding, 0055114 oxidation-reduction process, 0016021 integral to membrane; PDB: 1PT9_A 1DJL_A 1U31_B 2BRU_C 1PTJ_C 1HZZ_C 2FRD_C 2FSV_C 1XLT_C 1U2G_C ....
Probab=92.26 E-value=0.074 Score=52.96 Aligned_cols=59 Identities=27% Similarity=0.256 Sum_probs=40.7
Q ss_pred hhcCCCcEEEECCCCCccchHHHHHHHHHHhC---CcE--EecCCCCCc--------------------------cccCC
Q 038651 84 LLKAVKPAMIGGPKLSVSKATIAFVELADACG---YAF--AVMPSAKGM--------------------------IVEFA 132 (324)
Q Consensus 84 L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~---~Pv--~tt~~gkg~--------------------------~l~~a 132 (324)
|..|||-+|+-|+|..-++++.+++|+++.|. +-| .--+-+..+ -+.+.
T Consensus 304 l~~A~~VvIVPGYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHPVAGRMPGHMNVLLAEa~VpYd~~~emdeiN~~f~~~ 383 (463)
T PF02233_consen 304 LANAKKVVIVPGYGMAVAQAQHAVAELADLLEERGVEVKFAIHPVAGRMPGHMNVLLAEANVPYDIVKEMDEINPDFPDT 383 (463)
T ss_dssp HHH-SEEEEEESHHHHHCTTHHHHHHHHHHHHHTT-EEEEEE-TTSSSSTTHHHHHHHHCT--GGGEEEHHHHGGGGGG-
T ss_pred HHhcCceEEecCchHHHHHHHHHHHHHHHHHHhCCCEEEEEeccccCCCCCcceEEEEecCCCHHHHhhhhhcccchhcC
Confidence 88999999999999998899888888887763 222 112222111 67899
Q ss_pred cEEEEEcCcc
Q 038651 133 DAYIFVESIF 142 (324)
Q Consensus 133 Dlvl~lG~~~ 142 (324)
|++|++|+.-
T Consensus 384 Dv~lViGAND 393 (463)
T PF02233_consen 384 DVVLVIGAND 393 (463)
T ss_dssp SEEEEES-SG
T ss_pred CEEEEecccc
Confidence 9999999875
No 140
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=91.86 E-value=0.66 Score=51.75 Aligned_cols=114 Identities=14% Similarity=0.072 Sum_probs=75.1
Q ss_pred CCC-chHHHHhhhcCCC-------CeEeecCchHHHHHHHHHHhhhcCceEEEEeCCcchHHHHHHHHHHhhcCCcchhh
Q 038651 10 PAD-SSSLLDHLIAEPG-------SRDVGCCNELNAGYAADGSARARAVGAYVVTFIVGRLSIINAIAGAYSENFPAATI 81 (324)
Q Consensus 10 pG~-~~~l~dal~~~~~-------i~~i~~rhE~~A~~aAdgYaR~tg~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~I 81 (324)
|.+ +...++.+..... ..+|..-+|.+|+.|+-|.+. +|.=+...|+|||.+=+.-.|..+...++|+++.
T Consensus 28 Pss~i~e~l~~~~~~g~~n~~G~~~~~vq~EsE~~A~~av~GA~~-aGara~T~TSs~GL~LM~e~l~~~ag~~~P~Vi~ 106 (1165)
T TIGR02176 28 PSSTMGEYVDDWAAQGRKNIFGQTVKVVEMQSEAGAAGAVHGALQ-TGALTTTFTASQGLLLMIPNMYKIAGELLPCVFH 106 (1165)
T ss_pred CCcHHHHHHHHHHHhCCcccCCCCceEEEccchHHHHHHHHhHhh-cCCCEEEecChhHHHHHHHHHHHHHhccCCEEEE
Confidence 455 6666666654221 279999999999999999665 4633446799999999999998888889998876
Q ss_pred hh--------------------hhcCCCcEEEECCCCCc-cchHHHHHHHHHHhCCcEEecCCCC
Q 038651 82 TA--------------------LLKAVKPAMIGGPKLSV-SKATIAFVELADACGYAFAVMPSAK 125 (324)
Q Consensus 82 t~--------------------L~~AkrPvIl~G~g~~~-~~a~~~l~~lae~l~~Pv~tt~~gk 125 (324)
-. ++...-+ +++-..+.- .+..-.--.+||+...||+.-+.|-
T Consensus 107 va~R~~~~~~~~i~~dh~Dv~~~R~~G~i-vl~s~svQEa~D~al~A~~lAe~~~~Pvi~~~Dgf 170 (1165)
T TIGR02176 107 VSARAIAAHALSIFGDHQDVMAARQTGFA-MLASSSVQEVMDLALVAHLATIEARVPFMHFFDGF 170 (1165)
T ss_pred EecCCCCCCCCccCCCchHHHHhhcCCeE-EEeCCCHHHHHHHHHHHHHHHHhcCCCEEEEecCc
Confidence 21 2222222 333222211 1122234557888999999877763
No 141
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=91.38 E-value=0.39 Score=49.31 Aligned_cols=85 Identities=16% Similarity=0.163 Sum_probs=64.9
Q ss_pred cCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhh-hCCC-C----CCCCCCCHHHHHHHHHH---
Q 038651 207 SGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEI-HDGP-Y----NVIENWNYTGLVEAFQN--- 277 (324)
Q Consensus 207 ~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~-~~~~-~----~~l~~~df~~lA~a~G~--- 277 (324)
.....+++..||+.|+-+.++-|.-|+-.+.+++++|+.|..=.|-=.+ +.+. + ..-..++-..+.+++|+
T Consensus 443 ~~~k~~va~iGDsTF~HsGi~~l~nAV~n~~~~~~vvLdN~~tAMTGgQp~pg~~~~~~g~~~~~i~iee~~r~~Gv~~v 522 (640)
T COG4231 443 ASTKKIVAVIGDSTFFHSGILALINAVYNKANILVVVLDNRTTAMTGGQPHPGTGVAAEGTKSTAIVIEEVVRAMGVEDV 522 (640)
T ss_pred ccCCceEEEeccccccccCcHHHHHHHhcCCCeEEEEEeccchhccCCCCCCCcccccCCCccceeEhhHhhhhcCceee
Confidence 3347788999999998887788999999999999999999887764322 1211 1 22234688899999998
Q ss_pred -------------HHHHhHHhCCCCeEEE
Q 038651 278 -------------AIETAAVEKKDCLCFI 293 (324)
Q Consensus 278 -------------al~~a~~~~~~~p~lI 293 (324)
++++|+ +..+|.||
T Consensus 523 ~~vdp~~~~~~~~~~keal--e~~gpsVi 549 (640)
T COG4231 523 ETVDPYDVKELSEAIKEAL--EVPGPSVI 549 (640)
T ss_pred eccCCcchHHHHHHHHHHh--cCCCceEE
Confidence 777885 78888876
No 142
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=91.04 E-value=0.37 Score=52.20 Aligned_cols=87 Identities=17% Similarity=0.118 Sum_probs=51.8
Q ss_pred CeEEEecCchHH-hhhHHHH-HHHHHHhCCC---eEEEEEeCCchhhhhhhh---CCCC-------CC-----CCCCCHH
Q 038651 210 TAVIAETGDSWF-NCQKDVD-VSTMLRCEQK---NIIFLINNGNYTIEVEIH---DGPY-------NV-----IENWNYT 269 (324)
Q Consensus 210 ~~vv~d~G~~~~-~~~~~qE-L~Ta~r~~lp---viivV~NN~~yg~~~~~~---~~~~-------~~-----l~~~df~ 269 (324)
.+.|+--||+++ +-..+.| |--|.-+++| +++||.| ++|++--... ...| .+ +..-|..
T Consensus 343 ~v~v~~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvveN-Nq~g~tT~~~~~~s~~~~sd~Ak~~giP~~~VDG~D~~ 421 (924)
T PRK09404 343 VLPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVIN-NQIGFTTSPPDDRSTPYCTDVAKMVQAPIFHVNGDDPE 421 (924)
T ss_pred eEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEe-CCEEEeeCHHHhccchhHHHHHeecCCcEEEEcCCCHH
Confidence 466778899887 2222344 4446667887 5555555 5677532111 1111 01 1234666
Q ss_pred HHHHHHHHHHHHhHHhCCCCeEEEEEEecC
Q 038651 270 GLVEAFQNAIETAAVEKKDCLCFIEAIVHK 299 (324)
Q Consensus 270 ~lA~a~G~al~~a~~~~~~~p~lIeV~id~ 299 (324)
++.+++..|++.+. +.++|+|||+.+-+
T Consensus 422 AV~~a~~~A~e~~r--~g~gPvlIE~~tYR 449 (924)
T PRK09404 422 AVVFATRLALEYRQ--KFKKDVVIDLVCYR 449 (924)
T ss_pred HHHHHHHHHHHHHH--hcCcCEEEEEEEec
Confidence 77777666777774 77899999999843
No 143
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only]
Probab=90.83 E-value=0.45 Score=39.85 Aligned_cols=106 Identities=19% Similarity=0.217 Sum_probs=67.5
Q ss_pred cCCCC-chHHHHhhhcCCCCeEeec-CchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhh-cCCcchhhhh
Q 038651 8 SSPAD-SSSLLDHLIAEPGSRDVGC-CNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYS-ENFPAATITA 83 (324)
Q Consensus 8 ~~pG~-~~~l~dal~~~~~i~~i~~-rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~-d~~Pvl~It~ 83 (324)
+.|-+ ...++.-+..++.|..|.+ |.|.+-+..|.+| -+.+ +...+-.+|-| |.+|+++.-|. -++|++.|..
T Consensus 24 slPC~~lk~ll~lveedp~i~~i~vtREEeg~GIcAGa~-lAGkk~ailmQnsGlG--NsiNal~SL~~ty~iPl~ml~S 100 (172)
T COG4032 24 SLPCDNLKNLLPLVEEDPEIPEIPVTREEEGVGICAGAY-LAGKKPAILMQNSGLG--NSINALASLYVTYKIPLLMLAS 100 (172)
T ss_pred eccHHHHHhHHHHHhcCCCcccccccchhcceeeehhhh-hcCCCcEEEEeccCcc--hHHHHHHHHHHHhccchhhhhh
Confidence 56667 6667777766677777765 6666666666554 3444 77778778777 99999998876 4788887642
Q ss_pred hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEec
Q 038651 84 LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVM 121 (324)
Q Consensus 84 L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt 121 (324)
-|-+.--|-.+.- .....+-++.|-+++|.+|-
T Consensus 101 ----hRG~~~E~i~AQV-pmGr~~~kiLe~~~lpt~t~ 133 (172)
T COG4032 101 ----HRGVLKEGIEAQV-PMGRALPKILEGLELPTYTI 133 (172)
T ss_pred ----ccchhhcCCcccc-ccchhhHHHHhhcCCccccc
Confidence 2222222222111 23345677788888988764
No 144
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=89.63 E-value=1.2 Score=42.80 Aligned_cols=60 Identities=22% Similarity=0.230 Sum_probs=45.2
Q ss_pred hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecC-CCCCc-----------------cccCCcEEEEEcCccCC
Q 038651 84 LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMP-SAKGM-----------------IVEFADAYIFVESIFND 144 (324)
Q Consensus 84 L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~-~gkg~-----------------~l~~aDlvl~lG~~~~~ 144 (324)
|.+||||+++-|.... ..|.+.-.+++|++|+-+=.+. ...|- .-+.||+|+-.||...+
T Consensus 76 Lv~aKrPllyg~s~ts-cEA~~~gielaE~~gaviD~~asvchGp~~~alqe~g~p~~TlgevKNraDviVyWGtNP~~ 153 (429)
T COG1029 76 LVNAKRPLLYGWSSTS-CEAQELGIELAEKLGAVIDSNASVCHGPSVLALQEAGKPTATLGEVKNRADVIVYWGTNPMH 153 (429)
T ss_pred HHhccCceEeccccch-HHHHHHHHHHHHHhCcEecCCCccccchHHHHHHhcCCcccchhhhcccccEEEEeCCCccc
Confidence 8899999998777654 5788899999999998665332 11111 55789999999998643
No 145
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=88.95 E-value=1.2 Score=46.53 Aligned_cols=46 Identities=11% Similarity=0.177 Sum_probs=33.4
Q ss_pred ecCCCeEEEecCchHHhhhHH-HHHHHHHHhCCCeEEEEEeCCchhhh
Q 038651 206 LSGNTAVIAETGDSWFNCQKD-VDVSTMLRCEQKNIIFLINNGNYTIE 252 (324)
Q Consensus 206 ~~~~~~vv~d~G~~~~~~~~~-qEL~Ta~r~~lpviivV~NN~~yg~~ 252 (324)
..++..+++-.||+.+.-... .-+..|..+++|+ ++|+||++|.+-
T Consensus 130 ~~~~~~v~~~~GDG~~~eG~~~Ea~~~a~~~~l~~-i~ii~~N~~~i~ 176 (617)
T TIGR00204 130 KGADRKTVCVIGDGAITAGMAFEALNHAGDLKTDM-IVILNDNEMSIS 176 (617)
T ss_pred hCCCCEEEEEECCcccccccHHHHHHHHHhcCCCE-EEEEECCCcccC
Confidence 346678888899887533222 5577788999998 888888888653
No 146
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=85.61 E-value=0.87 Score=45.22 Aligned_cols=59 Identities=12% Similarity=0.064 Sum_probs=45.1
Q ss_pred hhcCCCcEEEECCCCCccchHHHHHHHHHHhC---C-------cEEecCCCCC--------c-------------cccCC
Q 038651 84 LLKAVKPAMIGGPKLSVSKATIAFVELADACG---Y-------AFAVMPSAKG--------M-------------IVEFA 132 (324)
Q Consensus 84 L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~---~-------Pv~tt~~gkg--------~-------------~l~~a 132 (324)
|..|||-+|+=|+|..-++++.+++||+|.|. + ||.-...|.= + -+.+.
T Consensus 303 l~~A~~ViIVPGYGmAVAqAQh~v~el~~~L~~~Gv~V~faIHPVAGRMPGHMNVLLAEA~VPYd~v~eMdeIN~~F~~t 382 (462)
T PRK09444 303 LKNSHSVIITPGYGMAVAQAQYPVAEITEKLRARGINVRFGIHPVAGRLPGHMNVLLAEAKVPYDIVLEMDEINDDFADT 382 (462)
T ss_pred HHhCCcEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeccccccCCCcceeEEeecCCCHHHHHhHHhhccccccC
Confidence 88899999999999999999999999888875 1 3332222210 0 66799
Q ss_pred cEEEEEcCcc
Q 038651 133 DAYIFVESIF 142 (324)
Q Consensus 133 Dlvl~lG~~~ 142 (324)
|++|++|+.-
T Consensus 383 DvalVIGAND 392 (462)
T PRK09444 383 DTVLVIGAND 392 (462)
T ss_pred CEEEEecCcc
Confidence 9999999875
No 147
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=85.61 E-value=1 Score=35.08 Aligned_cols=56 Identities=13% Similarity=0.173 Sum_probs=41.9
Q ss_pred cCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc---cccCCcEEEEEcCcc
Q 038651 86 KAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM---IVEFADAYIFVESIF 142 (324)
Q Consensus 86 ~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~---~l~~aDlvl~lG~~~ 142 (324)
+.++-++++|.|...+-..+.+.+++++.|+++-....+-+- ...++| ++++|..+
T Consensus 2 ~~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~~~~~~~~~~~~~D-vill~pqi 60 (95)
T TIGR00853 2 NETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAGSYGAAGEKLDDAD-VVLLAPQV 60 (95)
T ss_pred CccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEecHHHHHhhcCCCC-EEEECchH
Confidence 357889999999987777899999999999997544333221 557889 45567665
No 148
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=84.14 E-value=3.1 Score=40.91 Aligned_cols=80 Identities=25% Similarity=0.217 Sum_probs=65.4
Q ss_pred cCceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhhhhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc
Q 038651 48 RAVGAYVVTFIVGRLSIINAIAGAYSENFPAATITALLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM 127 (324)
Q Consensus 48 tg~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~ 127 (324)
+|+=+.+..+|+|=|-.+.=||.=|. + +.+++|--|+.=. .-|-+|.++|..+|+.+|+|+-.....+..
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~----~-----~~~~~kVaiITtD-tYRIGA~EQLk~Ya~im~vp~~vv~~~~el 272 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYV----M-----LKKKKKVAIITTD-TYRIGAVEQLKTYADIMGVPLEVVYSPKEL 272 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHH----h-----hccCcceEEEEec-cchhhHHHHHHHHHHHhCCceEEecCHHHH
Confidence 34666678999999988888887766 2 6777787777644 456799999999999999999999888887
Q ss_pred -----cccCCcEEEE
Q 038651 128 -----IVEFADAYIF 137 (324)
Q Consensus 128 -----~l~~aDlvl~ 137 (324)
.++++|+||+
T Consensus 273 ~~ai~~l~~~d~ILV 287 (407)
T COG1419 273 AEAIEALRDCDVILV 287 (407)
T ss_pred HHHHHHhhcCCEEEE
Confidence 7789999886
No 149
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=82.77 E-value=2.3 Score=40.70 Aligned_cols=60 Identities=12% Similarity=0.009 Sum_probs=41.4
Q ss_pred EeCCcchHHHHHHHHHHhhcCCcchhhhhhhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCC
Q 038651 55 VTFIVGRLSIINAIAGAYSENFPAATITALLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKG 126 (324)
Q Consensus 55 ~t~GpG~~N~~tgla~A~~d~~Pvl~It~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg 126 (324)
...|.|=|-.+.=||.=| .++-++.+|.+|. .-|++|.++|..++|++|+||+....|.+
T Consensus 146 GVNG~GKTTTIaKLA~~l-----------~~~g~~VllaA~D-TFRAaAiEQL~~w~er~gv~vI~~~~G~D 205 (340)
T COG0552 146 GVNGVGKTTTIAKLAKYL-----------KQQGKSVLLAAGD-TFRAAAIEQLEVWGERLGVPVISGKEGAD 205 (340)
T ss_pred ecCCCchHhHHHHHHHHH-----------HHCCCeEEEEecc-hHHHHHHHHHHHHHHHhCCeEEccCCCCC
Confidence 466777665555554432 3345565555655 56789999999999999999998644443
No 150
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=82.67 E-value=1.4 Score=33.34 Aligned_cols=50 Identities=16% Similarity=0.123 Sum_probs=37.6
Q ss_pred CcEEEECCCCCccchH-HHHHHHHHHhCCcEEecCCCCCc---cccCCcEEEEE
Q 038651 89 KPAMIGGPKLSVSKAT-IAFVELADACGYAFAVMPSAKGM---IVEFADAYIFV 138 (324)
Q Consensus 89 rPvIl~G~g~~~~~a~-~~l~~lae~l~~Pv~tt~~gkg~---~l~~aDlvl~l 138 (324)
|-++++|.|...+-.. ..+++.+++.|+.+..+...... ...++|+||.-
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi~~~~~~~~~~~~~~~~~~~D~il~~ 54 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGIEVEVSAGSILEVEEIADDADLILLT 54 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTECEEEEEEETTTHHHHHTT-SEEEEE
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccCceEEEEecccccccccCCCcEEEEc
Confidence 4589999999877766 89999999999888766555322 55679998754
No 151
>cd05564 PTS_IIB_chitobiose_lichenan PTS_IIB_chitobiose_lichenan: subunit IIB of enzyme II (EII) of the N,N-diacetylchitobiose-specific and lichenan-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In these systems, EII is either a lichenan- or an N,N-diacetylchitobiose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. In the chitobiose system, these subunits are expressed as separate proteins from chbA, chbB, and chbC of the chb operon (formerly the cel (cellulose) operon). In the lichenan system, these subunits are expressed from licA, licB, and licC of the lic operon. The lic operon of Bacillus subtilis is required for the transport and degradation of oligomeric beta-glucosides, which are produced by extracellular enzymes on substrates such as lichenan or barley glucan. The lic operon is transcribed from a gammaA-dependent promoter and is inducible by lichenan, lichenan hydrolysate, and cellobiose. The IIB d
Probab=82.65 E-value=1.9 Score=33.59 Aligned_cols=53 Identities=13% Similarity=0.124 Sum_probs=38.2
Q ss_pred CcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc---cccCCcEEEEEcCcc
Q 038651 89 KPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM---IVEFADAYIFVESIF 142 (324)
Q Consensus 89 rPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~---~l~~aDlvl~lG~~~ 142 (324)
|-++++|.|...+-..+.+.++++..|+|+-....+-+- ...++|+|| ++..+
T Consensus 1 kIl~~Cg~G~sTS~~~~ki~~~~~~~~~~~~v~~~~~~~~~~~~~~~Diil-~~Pqv 56 (96)
T cd05564 1 KILLVCSAGMSTSILVKKMKKAAEKRGIDAEIEAVPESELEEYIDDADVVL-LGPQV 56 (96)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHHCCCceEEEEecHHHHHHhcCCCCEEE-EChhH
Confidence 357899999988878889999999999997443332211 557889555 55554
No 152
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=82.53 E-value=7.3 Score=37.34 Aligned_cols=89 Identities=17% Similarity=0.108 Sum_probs=52.8
Q ss_pred ecCCCeEEEecCchHHhhhH-HHHHHHHHHhCCCeEEEEEeCCchhhh----hhhh------CCCC---CCCCCCCHHHH
Q 038651 206 LSGNTAVIAETGDSWFNCQK-DVDVSTMLRCEQKNIIFLINNGNYTIE----VEIH------DGPY---NVIENWNYTGL 271 (324)
Q Consensus 206 ~~~~~~vv~d~G~~~~~~~~-~qEL~Ta~r~~lpviivV~NN~~yg~~----~~~~------~~~~---~~l~~~df~~l 271 (324)
-.++++-++-=||+.-.-.+ +..+--|.=++||++ ||+-|+.|||- |... .+.| .....-|--++
T Consensus 184 ~~~~~v~~alYGDGAaNQGQ~fEa~NMA~LW~LP~I-FvCENN~yGMGTs~~Rasa~teyykRG~yiPGl~VdGmdvlaV 262 (394)
T KOG0225|consen 184 NREDAVCFALYGDGAANQGQVFEAFNMAALWKLPVI-FVCENNHYGMGTSAERASASTEYYKRGDYIPGLKVDGMDVLAV 262 (394)
T ss_pred ccCCceEEEEeccccccchhHHHHhhHHHHhCCCEE-EEEccCCCccCcchhhhhcChHHHhccCCCCceEECCcchhhH
Confidence 34556666666776532222 255667788899965 55666678873 3211 2222 11123455566
Q ss_pred HHHHHHHHHHhHHhCCCCeEEEEEEe
Q 038651 272 VEAFQNAIETAAVEKKDCLCFIEAIV 297 (324)
Q Consensus 272 A~a~G~al~~a~~~~~~~p~lIeV~i 297 (324)
=++.-.|.+.++ +.+||.|+|..+
T Consensus 263 r~a~KfA~~~~~--~g~GPilmE~~T 286 (394)
T KOG0225|consen 263 REATKFAKKYAL--EGKGPILMEMDT 286 (394)
T ss_pred HHHHHHHHHHHh--cCCCCEEEEEee
Confidence 666555666664 568999999987
No 153
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=81.93 E-value=1.9 Score=41.45 Aligned_cols=85 Identities=21% Similarity=0.131 Sum_probs=45.8
Q ss_pred CCeEEEecCchHHhhhH-HHHHHHHHHhCCCeEEEEEeCCchhhhhhhhCCCCCCCCCCCHHHHHHHHHH----------
Q 038651 209 NTAVIAETGDSWFNCQK-DVDVSTMLRCEQKNIIFLINNGNYTIEVEIHDGPYNVIENWNYTGLVEAFQN---------- 277 (324)
Q Consensus 209 ~~~vv~d~G~~~~~~~~-~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~~~~~~l~~~df~~lA~a~G~---------- 277 (324)
+..|.|.+||+.+.-.. ..-+..|.+++|.=.|+|++++...+.-... ....-|..+--+|||.
T Consensus 143 ~~~vy~l~GDGel~EG~~~EA~~~A~~~~L~nLi~i~D~N~~q~dg~~~-----~~~~~~~~~k~~a~Gw~v~~v~dGhd 217 (332)
T PF00456_consen 143 DHRVYVLMGDGELQEGSVWEAASLAGHYKLDNLIVIYDSNGIQIDGPTD-----IVFSEDIAKKFEAFGWNVIEVCDGHD 217 (332)
T ss_dssp T--EEEEEEHHHHHSHHHHHHHHHHHHTT-TTEEEEEEEESEETTEEGG-----GTHHSHHHHHHHHTT-EEEEEEETTB
T ss_pred cceEEEEecCccccchhhHHHHHHHHHhCCCCEEEEEecCCcccCCCcc-----cccchHHHHHHHHhhhhhcccccCcH
Confidence 34577888988763322 2668899999999666666666654421110 0001133333444443
Q ss_pred ------HHHHhHHhCCCCeEEEEEEecC
Q 038651 278 ------AIETAAVEKKDCLCFIEAIVHK 299 (324)
Q Consensus 278 ------al~~a~~~~~~~p~lIeV~id~ 299 (324)
||++|. ...++|++|.+.+-.
T Consensus 218 ~~~i~~A~~~a~-~~~~kP~~Ii~~Tvk 244 (332)
T PF00456_consen 218 VEAIYAAIEEAK-ASKGKPTVIIARTVK 244 (332)
T ss_dssp HHHHHHHHHHHH-HSTSS-EEEEEEE-T
T ss_pred HHHHHHHHHHHH-hcCCCCceeecceEE
Confidence 444553 245899999999753
No 154
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.77 E-value=2.7 Score=41.20 Aligned_cols=83 Identities=14% Similarity=-0.013 Sum_probs=56.5
Q ss_pred HhhhcC-ceEEE--EeCCcchHHHHHHHHHHhhcCCcchhhhhhhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEe
Q 038651 44 SARARA-VGAYV--VTFIVGRLSIINAIAGAYSENFPAATITALLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAV 120 (324)
Q Consensus 44 YaR~tg-~gv~~--~t~GpG~~N~~tgla~A~~d~~Pvl~It~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~t 120 (324)
|....| +.|++ .--|.|=|-.++=+|.=|. ++-.++.++++.- -|++|.++|...|++.++||+.
T Consensus 94 ~~~~K~kpsVimfVGLqG~GKTTtc~KlA~y~k-----------kkG~K~~LvcaDT-FRagAfDQLkqnA~k~~iP~yg 161 (483)
T KOG0780|consen 94 LQPKKGKPSVIMFVGLQGSGKTTTCTKLAYYYK-----------KKGYKVALVCADT-FRAGAFDQLKQNATKARVPFYG 161 (483)
T ss_pred cccccCCCcEEEEEeccCCCcceeHHHHHHHHH-----------hcCCceeEEeecc-cccchHHHHHHHhHhhCCeeEe
Confidence 334444 55553 3556666655555554432 4577899999875 5689999999999999999999
Q ss_pred cCCCCCc-----------cccCCcEEEEE
Q 038651 121 MPSAKGM-----------IVEFADAYIFV 138 (324)
Q Consensus 121 t~~gkg~-----------~l~~aDlvl~l 138 (324)
++.--.- -=+++|+||+=
T Consensus 162 syte~dpv~ia~egv~~fKke~fdvIIvD 190 (483)
T KOG0780|consen 162 SYTEADPVKIASEGVDRFKKENFDVIIVD 190 (483)
T ss_pred cccccchHHHHHHHHHHHHhcCCcEEEEe
Confidence 7544322 33578888863
No 155
>cd02761 MopB_FmdB-FwdB The MopB_FmdB-FwdB CD contains the molybdenum/tungsten formylmethanofuran dehydrogenases, subunit B (FmdB/FwdB), and other related proteins. Formylmethanofuran dehydrogenase catalyzes the first step in methane formation from CO2 in methanogenic archaea and some eubacteria. Members of this CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=80.68 E-value=3.8 Score=39.94 Aligned_cols=85 Identities=21% Similarity=0.221 Sum_probs=51.5
Q ss_pred hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecC-CCC----------C---c---cc-cCCcEEEEEcCccCCc
Q 038651 84 LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMP-SAK----------G---M---IV-EFADAYIFVESIFNDY 145 (324)
Q Consensus 84 L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~-~gk----------g---~---~l-~~aDlvl~lG~~~~~~ 145 (324)
|+++++|+++ |++.........+.+|++.+|..+.+.. ... | . -+ ++||+||++|+.+.+.
T Consensus 67 L~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~di~~~ad~il~~G~n~~~~ 145 (415)
T cd02761 67 LKEAKRPLFY-GLGTTVCEAQRAGIELAEKLGAIIDHAASVCHGPNLLALQDSGWPTTTLGEVKNRADVIVYWGTNPMHA 145 (415)
T ss_pred HHhhcCCEEE-EcccchHHHHHHHHHHHHHHCCCccccccccccchHHHHHhCCCccccHHHHHhcCCEEEEEcCCcccc
Confidence 7888899887 5544443556678899999997542210 000 1 0 23 4799999999997554
Q ss_pred ccccc-c--c-----c----CCC-CEEEEcCCccccc
Q 038651 146 SSVGY-S--L-----L----LNK-KAILMQPDRIVVA 169 (324)
Q Consensus 146 ~t~~~-~--~-----~----~~~-~iI~id~d~~~i~ 169 (324)
....+ . . . .+. ++|.||+...+..
T Consensus 146 ~p~~~~~~~~~~~~~~~~~~~~g~kli~idp~~t~ta 182 (415)
T cd02761 146 HPRHMSRYSVFPRGFFREGGREDRTLIVVDPRKSDTA 182 (415)
T ss_pred ccHHhhhhhhhhhhhccccCCCCCEEEEEcCCCcchh
Confidence 32211 1 0 0 122 3899998776553
No 156
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=80.47 E-value=2.4 Score=33.39 Aligned_cols=53 Identities=11% Similarity=0.073 Sum_probs=39.5
Q ss_pred CcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc---cccCCcEEEEEcCcc
Q 038651 89 KPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM---IVEFADAYIFVESIF 142 (324)
Q Consensus 89 rPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~---~l~~aDlvl~lG~~~ 142 (324)
|-++++|+|+..+=..+.++++++..|+++-....+-+- .++++| ++++|...
T Consensus 2 ~Ill~C~~GaSSs~la~km~~~a~~~gi~~~i~a~~~~e~~~~~~~~D-vill~PQv 57 (99)
T cd05565 2 NVLVLCAGGGTSGLLANALNKGAKERGVPLEAAAGAYGSHYDMIPDYD-LVILAPQM 57 (99)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeeHHHHHHhccCCC-EEEEcChH
Confidence 357889999887778899999999999997644322221 678889 56677665
No 157
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=80.12 E-value=9.7 Score=33.59 Aligned_cols=62 Identities=24% Similarity=0.199 Sum_probs=45.6
Q ss_pred EEEEeCCcchHHHHHHHHHHhhcCCcchhhhhhhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCC
Q 038651 52 AYVVTFIVGRLSIINAIAGAYSENFPAATITALLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAK 125 (324)
Q Consensus 52 v~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gk 125 (324)
+.+..+|.|=|-++.=||.-+. .+ .+++.++... ..|.++.++|+.+|+.+|+|++......
T Consensus 5 ~lvGptGvGKTTt~aKLAa~~~----------~~-~~~v~lis~D-~~R~ga~eQL~~~a~~l~vp~~~~~~~~ 66 (196)
T PF00448_consen 5 ALVGPTGVGKTTTIAKLAARLK----------LK-GKKVALISAD-TYRIGAVEQLKTYAEILGVPFYVARTES 66 (196)
T ss_dssp EEEESTTSSHHHHHHHHHHHHH----------HT-T--EEEEEES-TSSTHHHHHHHHHHHHHTEEEEESSTTS
T ss_pred EEECCCCCchHhHHHHHHHHHh----------hc-cccceeecCC-CCCccHHHHHHHHHHHhccccchhhcch
Confidence 3457888898888888886653 23 5666677654 4568999999999999999999766544
No 158
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=77.18 E-value=11 Score=39.39 Aligned_cols=43 Identities=16% Similarity=0.255 Sum_probs=27.0
Q ss_pred cCCCeEEEecCchHHhhhHH-HHHHHHHHhCCCeEEEEEeCCchh
Q 038651 207 SGNTAVIAETGDSWFNCQKD-VDVSTMLRCEQKNIIFLINNGNYT 250 (324)
Q Consensus 207 ~~~~~vv~d~G~~~~~~~~~-qEL~Ta~r~~lpviivV~NN~~yg 250 (324)
..+..|++..||+.+.-... .-+..|.+++ .=.++|+|+++..
T Consensus 197 g~~~~v~~viGDGel~eG~~wEAl~~a~~~~-~nlivIlddN~~~ 240 (641)
T PLN02234 197 GMNNSVVSVIGDGAMTAGQAYEAMNNAGYLH-SNMIVILNDNKQV 240 (641)
T ss_pred CCCCeEEEEEccchhhhHHHHHHHHHHhhhC-CCEEEEEECCCCC
Confidence 34556788889987644322 4466666555 5566667777663
No 159
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=73.24 E-value=4.7 Score=31.99 Aligned_cols=54 Identities=17% Similarity=0.030 Sum_probs=38.6
Q ss_pred CCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc---c--ccCCcEEEEEcCcc
Q 038651 88 VKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM---I--VEFADAYIFVESIF 142 (324)
Q Consensus 88 krPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~---~--l~~aDlvl~lG~~~ 142 (324)
||-++++|+|...+-..+.+.++++..|+++-....+-+- . ..++|+ +++|...
T Consensus 2 kkILlvCg~G~STSlla~k~k~~~~e~gi~~~i~a~~~~e~~~~~~~~~~Dv-Ill~PQi 60 (104)
T PRK09590 2 KKALIICAAGMSSSMMAKKTTEYLKEQGKDIEVDAITATEGEKAIAAAEYDL-YLVSPQT 60 (104)
T ss_pred cEEEEECCCchHHHHHHHHHHHHHHHCCCceEEEEecHHHHHHhhccCCCCE-EEEChHH
Confidence 5778999999987777889999999999997554333221 2 236884 4566554
No 160
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=72.75 E-value=19 Score=30.66 Aligned_cols=77 Identities=10% Similarity=0.019 Sum_probs=46.0
Q ss_pred EEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhhCCCCCCCCCCCHHHHHHHHHH--------------
Q 038651 212 VIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIHDGPYNVIENWNYTGLVEAFQN-------------- 277 (324)
Q Consensus 212 vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~~~~~~l~~~df~~lA~a~G~-------------- 277 (324)
+++-.|-+...+ +.-+.+|...++|+++|.-+-......+ ..+...|...+.+.+-.
T Consensus 67 ~~~t~GpG~~n~--~~~l~~A~~~~~Pvl~I~g~~~~~~~~~-------~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~ 137 (164)
T cd07039 67 CLGSSGPGAIHL--LNGLYDAKRDRAPVLAIAGQVPTDELGT-------DYFQEVDLLALFKDVAVYNETVTSPEQLPEL 137 (164)
T ss_pred EEECCCCcHHHH--HHHHHHHHhcCCCEEEEecCCcccccCC-------CCCcccCHHHHHHHhhcEEEEeCCHHHHHHH
Confidence 334445554433 2569999999999999987655432211 11222344444444433
Q ss_pred ---HHHHhHHhCCCCeEEEEEEecC
Q 038651 278 ---AIETAAVEKKDCLCFIEAIVHK 299 (324)
Q Consensus 278 ---al~~a~~~~~~~p~lIeV~id~ 299 (324)
|++.+. ...||+.|||..|-
T Consensus 138 i~~A~~~a~--~~~GPV~l~iP~dv 160 (164)
T cd07039 138 LDRAIRTAI--AKRGVAVLILPGDV 160 (164)
T ss_pred HHHHHHHHh--cCCCCEEEEeChHH
Confidence 555553 35699999998774
No 161
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=71.73 E-value=9.3 Score=42.68 Aligned_cols=68 Identities=12% Similarity=0.060 Sum_probs=51.1
Q ss_pred cCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhh-CCCCCCCCCCCHHHHHHHHHH
Q 038651 207 SGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIH-DGPYNVIENWNYTGLVEAFQN 277 (324)
Q Consensus 207 ~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~-~~~~~~l~~~df~~lA~a~G~ 277 (324)
.++.-|+...||+.|.-+.+.-|--|+-.+.+++++|+.|+.=.|-=.+. .+. +..++..++.++.|+
T Consensus 497 ~~~~hv~a~iGDgTffHSG~~al~~AV~~~~nit~~IL~N~~vAMTGgQ~~~g~---~~~~~i~~~~~a~GV 565 (1165)
T PRK09193 497 TDEKHVFQNLGDGTYFHSGLLAIRAAVAAGVNITYKILYNDAVAMTGGQPVDGG---LSVPQITRQLAAEGV 565 (1165)
T ss_pred cCCCcEEEEeccccchhcCHHHHHHHHhcCCCeEEEEEeCCcccccCCCCCCCC---cchhhHHHHHHhCCC
Confidence 44567889999999877777889999999999999999999887743221 222 345666777777766
No 162
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=69.58 E-value=8.7 Score=38.17 Aligned_cols=66 Identities=17% Similarity=0.076 Sum_probs=43.2
Q ss_pred ceEEE--EeCCcchHHHHHHHHHHhhcCCcchhhhhhhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc
Q 038651 50 VGAYV--VTFIVGRLSIINAIAGAYSENFPAATITALLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM 127 (324)
Q Consensus 50 ~gv~~--~t~GpG~~N~~tgla~A~~d~~Pvl~It~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~ 127 (324)
+.|++ .--|-|=|-...=||.= |.+-++=++++.....|..|.++|+.|++..++||+....++.-
T Consensus 100 P~vImmvGLQGsGKTTt~~KLA~~------------lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~P 167 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAGKLAKY------------LKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDP 167 (451)
T ss_pred CeEEEEEeccCCChHhHHHHHHHH------------HHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCH
Confidence 44443 35566655544444433 33333444445566788999999999999999999988555543
No 163
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=69.36 E-value=8.1 Score=30.07 Aligned_cols=52 Identities=17% Similarity=0.138 Sum_probs=40.8
Q ss_pred CCcEEEECCCCCccch-HHHHHHHHHHhCCcEEecCCCCCc---cccCCcEEEEEc
Q 038651 88 VKPAMIGGPKLSVSKA-TIAFVELADACGYAFAVMPSAKGM---IVEFADAYIFVE 139 (324)
Q Consensus 88 krPvIl~G~g~~~~~a-~~~l~~lae~l~~Pv~tt~~gkg~---~l~~aDlvl~lG 139 (324)
+|-+..+|.|+..|-. ...+++++..+|+|+-......+. ....+|+++..-
T Consensus 2 ~KIL~aCG~GvgSS~~ik~kve~~l~~~gi~~~~~~~~v~~~~~~~~~aDiiv~s~ 57 (93)
T COG3414 2 IKILAACGNGVGSSTMIKMKVEEVLKELGIDVDVEQCAVDEIKALTDGADIIVTST 57 (93)
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHHHcCCCceeeeEEecccccCCCcccEEEEeh
Confidence 4678889999976554 568999999999997776666655 677889888764
No 164
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=68.40 E-value=13 Score=39.21 Aligned_cols=41 Identities=17% Similarity=0.208 Sum_probs=28.1
Q ss_pred cCCCeEEEecCchHHhhhHH-HHHHHHHHhCCCeEEEEEeCC
Q 038651 207 SGNTAVIAETGDSWFNCQKD-VDVSTMLRCEQKNIIFLINNG 247 (324)
Q Consensus 207 ~~~~~vv~d~G~~~~~~~~~-qEL~Ta~r~~lpviivV~NN~ 247 (324)
..+..+++..||+.+.-... .-|..|..+++|+++||-||+
T Consensus 164 ~~~~~v~~viGDG~~~~G~~~Ealn~a~~~~~~li~iv~~N~ 205 (677)
T PLN02582 164 GKKNNVVAVIGDGAMTAGQAYEAMNNAGYLDSDMIVILNDNK 205 (677)
T ss_pred CCCCEEEEEecccccchhhHHHHHHHHHhhCcCEEEEEECCC
Confidence 45667888899987643322 557778888998666666664
No 165
>PRK10499 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIB; Provisional
Probab=68.28 E-value=9.6 Score=30.24 Aligned_cols=54 Identities=9% Similarity=0.012 Sum_probs=38.6
Q ss_pred CCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc---cccCCcEEEEEcCcc
Q 038651 88 VKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM---IVEFADAYIFVESIF 142 (324)
Q Consensus 88 krPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~---~l~~aDlvl~lG~~~ 142 (324)
+|-++++|.|...+=..+.+.+.+++.|+++-..-.+-+. ...++|+|| +|..+
T Consensus 4 kkIllvC~~G~sTSll~~km~~~~~~~gi~~~V~A~~~~~~~~~~~~~DviL-l~Pqi 60 (106)
T PRK10499 4 KHIYLFCSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLAGEKGQNADVVL-LGPQI 60 (106)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHCCCCEEEEEeecchhhccccCCCEEE-ECHHH
Confidence 5789999999987666778999999999997644322222 456889554 66554
No 166
>cd01410 SIRT7 SIRT7: Eukaryotic and prokaryotic group (class4) which includes human sirtuin SIRT6, SIRT7, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=67.61 E-value=2.5 Score=37.65 Aligned_cols=42 Identities=7% Similarity=0.039 Sum_probs=27.5
Q ss_pred cccCCcEEEEEcCccCCccccccccc--CCCC-EEEEcCCccccc
Q 038651 128 IVEFADAYIFVESIFNDYSSVGYSLL--LNKK-AILMQPDRIVVA 169 (324)
Q Consensus 128 ~l~~aDlvl~lG~~~~~~~t~~~~~~--~~~~-iI~id~d~~~i~ 169 (324)
.+++||++|++||++.-.....+... .... +|.|+.++....
T Consensus 152 ~~~~aDlllviGTSl~V~pa~~l~~~~~~~g~~vi~iN~~~~~~d 196 (206)
T cd01410 152 AACRADLFLCLGTSLQVTPAANLPLKAARAGGRLVIVNLQPTPKD 196 (206)
T ss_pred HHhcCCEEEEECcCceehhHHHHHHHHHhcCCeEEEECCCCCCCC
Confidence 55689999999999964433322211 1223 888998887654
No 167
>PRK14974 cell division protein FtsY; Provisional
Probab=66.22 E-value=35 Score=32.83 Aligned_cols=60 Identities=15% Similarity=0.006 Sum_probs=39.6
Q ss_pred EEeCCcchHHHHHHHHHHhhcCCcchhhhhhhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCC
Q 038651 54 VVTFIVGRLSIINAIAGAYSENFPAATITALLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAK 125 (324)
Q Consensus 54 ~~t~GpG~~N~~tgla~A~~d~~Pvl~It~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gk 125 (324)
+...|.|=|-++.-++..+.+ ....++++.....|.++.+++..+++.+|+|++....+.
T Consensus 146 ~G~~GvGKTTtiakLA~~l~~------------~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~ 205 (336)
T PRK14974 146 VGVNGTGKTTTIAKLAYYLKK------------NGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGA 205 (336)
T ss_pred EcCCCCCHHHHHHHHHHHHHH------------cCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCC
Confidence 344555556566666654433 233455555556677889999999999999998655443
No 168
>cd05569 PTS_IIB_fructose PTS_IIB_fructose: subunit IIB of enzyme II (EII) of the fructose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII (also referred to as FruAB) is a fructose-specific permease made up of two proteins (FruA and FruB) each containing 3 domains. The FruA protein contains two tandem nonidentical IIB domains and a C-terminal IIC transmembrane domain. Both IIB domains of FruA are included in this alignment. The FruB protein (also referred to as diphosphoryl transfer protein) contains a IIA domain, a domain of unknown function, and an Hpr-like domain called FPr (fructose-inducible HPr). This familiy also includes the IIB domains of several fructose-like PTS permeases including the Frv permease encoded by the frvABXR operon, the Frw permease encoded by the frwACBD operon, the Frx permease encoded by the hrsA gene, and the Fry permease encoded by the fryABC (ypdDGH) operon. FruAB takes up exogenous fructose, releasing the 1-p
Probab=66.09 E-value=11 Score=29.24 Aligned_cols=69 Identities=17% Similarity=0.161 Sum_probs=45.4
Q ss_pred EEECCCCCccc-hHHHHHHHHHHhCCcEEecCCCC-Cc-------cccCCcEEEEEcCccCCcccccccccCCCCEEEEc
Q 038651 92 MIGGPKLSVSK-ATIAFVELADACGYAFAVMPSAK-GM-------IVEFADAYIFVESIFNDYSSVGYSLLLNKKAILMQ 162 (324)
Q Consensus 92 Il~G~g~~~~~-a~~~l~~lae~l~~Pv~tt~~gk-g~-------~l~~aDlvl~lG~~~~~~~t~~~~~~~~~~iI~id 162 (324)
+-+|.|...+- +.+.|++.+++.|+.+-....+. |+ .+++||+||++|..-.+. ..+..+++++.+
T Consensus 5 ~ac~~G~a~s~laa~~L~~aa~~~g~~~~ve~~~~~g~~~~l~~~~i~~Ad~vi~~~~~~~~~-----~rf~gk~v~~~~ 79 (96)
T cd05569 5 TACPTGIAHTYMAAEALEKAAKKLGWEIKVETQGSLGIENELTAEDIAEADAVILAADVPVDD-----ERFAGKRVYEVS 79 (96)
T ss_pred EECCCchhHHHHHHHHHHHHHHHCCCeEEEEEecCcCccCcCCHHHHhhCCEEEEecCCCCch-----hhhCCCeEEEec
Confidence 44666765433 56899999999999988554433 33 678999999999765332 122222377766
Q ss_pred CCc
Q 038651 163 PDR 165 (324)
Q Consensus 163 ~d~ 165 (324)
++.
T Consensus 80 ~~~ 82 (96)
T cd05569 80 VAE 82 (96)
T ss_pred HHH
Confidence 653
No 169
>PLN02828 formyltetrahydrofolate deformylase
Probab=64.58 E-value=16 Score=34.00 Aligned_cols=101 Identities=9% Similarity=0.073 Sum_probs=55.9
Q ss_pred ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhhhhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCC-C--
Q 038651 50 VGAYVVTFIVGRLSIINAIAGAYSENFPAATITALLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAK-G-- 126 (324)
Q Consensus 50 ~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gk-g-- 126 (324)
+=+++..||-| +.+..|..++.++-- .+ .++.++..--.. ....+.++|++.|+|+..-+.-+ .
T Consensus 71 ~riavlvSg~g--~nl~~ll~~~~~g~l--------~~-eI~~ViSn~~~~--~~a~~~~~A~~~gIP~~~~~~~~~~~~ 137 (268)
T PLN02828 71 YKIAVLASKQD--HCLIDLLHRWQDGRL--------PV-DITCVISNHERG--PNTHVMRFLERHGIPYHYLPTTKENKR 137 (268)
T ss_pred cEEEEEEcCCC--hhHHHHHHhhhcCCC--------Cc-eEEEEEeCCCCC--CCchHHHHHHHcCCCEEEeCCCCCCCH
Confidence 34555556766 788899888877631 11 122222211100 11257899999999998433211 1
Q ss_pred ---c--cccCCcEEEEEcCccCCcccccccccCCCCEEEEcCCc
Q 038651 127 ---M--IVEFADAYIFVESIFNDYSSVGYSLLLNKKAILMQPDR 165 (324)
Q Consensus 127 ---~--~l~~aDlvl~lG~~~~~~~t~~~~~~~~~~iI~id~d~ 165 (324)
+ .+++.|+|++.|-.- .-+..+-..++.++|.|++.-
T Consensus 138 e~~~~~~l~~~DliVLAgym~--IL~~~~l~~~~~riINIHpSl 179 (268)
T PLN02828 138 EDEILELVKGTDFLVLARYMQ--ILSGNFLKGYGKDIINIHHGL 179 (268)
T ss_pred HHHHHHHHhcCCEEEEeeehH--hCCHHHHhhccCCEEEecCcc
Confidence 1 556899999998432 222122222334488777663
No 170
>COG1282 PntB NAD/NADP transhydrogenase beta subunit [Energy production and conversion]
Probab=63.48 E-value=7.6 Score=37.67 Aligned_cols=59 Identities=14% Similarity=0.080 Sum_probs=42.5
Q ss_pred hhcCCCcEEEECCCCCccchHHHHHHHHHHhC---CcE-------EecCCCCC-c--------------------cccCC
Q 038651 84 LLKAVKPAMIGGPKLSVSKATIAFVELADACG---YAF-------AVMPSAKG-M--------------------IVEFA 132 (324)
Q Consensus 84 L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~---~Pv-------~tt~~gkg-~--------------------~l~~a 132 (324)
|..|++-+|+-|+|..-++++-.++|++|+|. ++| .-...|.- + -+.++
T Consensus 305 l~nA~sVIIvPGYGmAVAQAQh~v~E~~~~L~~~Gv~VrfaIHPVAGRmPGHMNVLLAEA~VpYd~v~emddIN~dF~~t 384 (463)
T COG1282 305 LKNASSVIIVPGYGMAVAQAQHPVAEITEKLRARGVNVRFAIHPVAGRMPGHMNVLLAEAKVPYDIVLEMDEINDDFADT 384 (463)
T ss_pred HhCCCeEEEecCchHHHHhhhhHHHHHHHHHHhcCCeeeEeecccccCCCcchhhhhhhccCCHHHHhhHHhhcchhccc
Confidence 88999999999999988888777777777664 443 22222210 0 56789
Q ss_pred cEEEEEcCcc
Q 038651 133 DAYIFVESIF 142 (324)
Q Consensus 133 Dlvl~lG~~~ 142 (324)
|+++++|+.-
T Consensus 385 DVvlVIGAND 394 (463)
T COG1282 385 DVVLVIGAND 394 (463)
T ss_pred cEEEEEccCC
Confidence 9999999875
No 171
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=63.21 E-value=28 Score=29.58 Aligned_cols=77 Identities=10% Similarity=0.062 Sum_probs=46.3
Q ss_pred EEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhh-hCCCCCCCCCCCHHHHHH-----------------H
Q 038651 213 IAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEI-HDGPYNVIENWNYTGLVE-----------------A 274 (324)
Q Consensus 213 v~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~-~~~~~~~l~~~df~~lA~-----------------a 274 (324)
++-.|.+...+ +.-|..|...++|++++.-.-..+..-+.. |. ..|...+.+ .
T Consensus 69 ~~~~GpG~~n~--~~~l~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~-------~~d~~~~~~~~~k~~~~v~~~~~~~~~ 139 (172)
T PF02776_consen 69 IVTSGPGATNA--LTGLANAYADRIPVLVITGQRPSAGEGRGAFQQ-------EIDQQSLFRPVTKWSYRVTSPDDLPEA 139 (172)
T ss_dssp EEETTHHHHTT--HHHHHHHHHTT-EEEEEEEESSGGGTTTTSTTS-------STHHHHHHGGGSSEEEEECSGGGHHHH
T ss_pred EeecccchHHH--HHHHhhcccceeeEEEEecccchhhhccccccc-------chhhcchhccccchhcccCCHHHHHHH
Confidence 34445543332 366899999999999999988777654211 10 123333333 3
Q ss_pred HHHHHHHhHHhCCCCeEEEEEEecC
Q 038651 275 FQNAIETAAVEKKDCLCFIEAIVHK 299 (324)
Q Consensus 275 ~G~al~~a~~~~~~~p~lIeV~id~ 299 (324)
+--|++.+. ....+|+.|++..|-
T Consensus 140 ~~~A~~~a~-~~~~gPv~l~ip~dv 163 (172)
T PF02776_consen 140 LDRAFRAAT-SGRPGPVYLEIPQDV 163 (172)
T ss_dssp HHHHHHHHH-HCSTSEEEEEEEHHH
T ss_pred HHHHHHHhc-cCCCccEEEEcChhH
Confidence 333555553 378899999998763
No 172
>cd01409 SIRT4 SIRT4: Eukaryotic and prokaryotic group (class2) which includes human sirtuin SIRT4 and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=63.06 E-value=3.4 Score=38.22 Aligned_cols=42 Identities=17% Similarity=0.101 Sum_probs=28.2
Q ss_pred cccCCcEEEEEcCccCCcccccccc--cCCCC-EEEEcCCccccc
Q 038651 128 IVEFADAYIFVESIFNDYSSVGYSL--LLNKK-AILMQPDRIVVA 169 (324)
Q Consensus 128 ~l~~aDlvl~lG~~~~~~~t~~~~~--~~~~~-iI~id~d~~~i~ 169 (324)
.+++||++|+|||++.-........ ..... +|.|+.++....
T Consensus 201 ~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~viiIN~~~t~~d 245 (260)
T cd01409 201 RLAEADALLVLGSSLMVYSGYRFVLAAAEAGLPIAIVNIGPTRAD 245 (260)
T ss_pred HHhcCCEEEEeCcCceecchhhHHHHHHHCCCcEEEEcCCCCCCC
Confidence 6678999999999996443322211 11233 899999887664
No 173
>cd01413 SIR2_Af2 SIR2_Af2: Archaeal and prokaryotic group which includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus solfataricus ssSir2, and several bacterial homologs; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The Sir2 homolog from the archaea Sulfolobus solftaricus deacetylates the non-specific DNA protein Alba to mediate transcription repression.
Probab=63.01 E-value=3.2 Score=37.40 Aligned_cols=42 Identities=19% Similarity=0.233 Sum_probs=27.6
Q ss_pred cccCCcEEEEEcCccCCccccccccc--CCCC-EEEEcCCccccc
Q 038651 128 IVEFADAYIFVESIFNDYSSVGYSLL--LNKK-AILMQPDRIVVA 169 (324)
Q Consensus 128 ~l~~aDlvl~lG~~~~~~~t~~~~~~--~~~~-iI~id~d~~~i~ 169 (324)
.+++||++|+|||++.-.....+... .... +|-|+.++....
T Consensus 168 ~~~~~Dl~lvvGTSl~V~p~~~l~~~a~~~g~~~i~iN~~~~~~~ 212 (222)
T cd01413 168 AAKEADLFIVLGSSLVVYPANLLPLIAKENGAKLVIVNADETPFD 212 (222)
T ss_pred HHhcCCEEEEEccCCEeccHhHHHHHHHHcCCeEEEEcCCCCCCC
Confidence 66789999999999964443322111 1233 888988876543
No 174
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=62.74 E-value=16 Score=35.39 Aligned_cols=55 Identities=16% Similarity=0.157 Sum_probs=38.7
Q ss_pred CCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc-------------cccCCcEEEEEcCc
Q 038651 87 AVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM-------------IVEFADAYIFVESI 141 (324)
Q Consensus 87 AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~-------------~l~~aDlvl~lG~~ 141 (324)
.+|++|+.|.+....+..+++.+..+..|+.+..-..-+.- --.++|+||.||..
T Consensus 24 ~~~~liv~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGG 91 (370)
T cd08192 24 IKRPLIVTDPGLAALGLVARVLALLEDAGLAAALFDEVPPNPTEAAVEAGLAAYRAGGCDGVIAFGGG 91 (370)
T ss_pred CCeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 47999999988876667888888888888876431111111 23578999999973
No 175
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=62.74 E-value=11 Score=29.16 Aligned_cols=54 Identities=9% Similarity=0.092 Sum_probs=37.6
Q ss_pred CcEEEECCCCCccch-HHHHHHHHHHhCCcEEecCCCC-Cc--cccCCcEEEEEcCccC
Q 038651 89 KPAMIGGPKLSVSKA-TIAFVELADACGYAFAVMPSAK-GM--IVEFADAYIFVESIFN 143 (324)
Q Consensus 89 rPvIl~G~g~~~~~a-~~~l~~lae~l~~Pv~tt~~gk-g~--~l~~aDlvl~lG~~~~ 143 (324)
|-++++|.|...+-. ...++++.+..|+++=.....- .+ .++++|+| +.++.+.
T Consensus 4 kILvvCgsG~~TS~m~~~ki~~~l~~~gi~~~v~~~~~~e~~~~~~~~D~i-v~t~~~~ 61 (94)
T PRK10310 4 KIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEIETYMDGVHLI-CTTARVD 61 (94)
T ss_pred eEEEECCCchhHHHHHHHHHHHHHHHCCCeEEEEEecHHHHhhhcCCCCEE-EECCccc
Confidence 678999999977666 6899999999999854332111 11 45788977 5555553
No 176
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=62.54 E-value=3.8 Score=37.27 Aligned_cols=41 Identities=12% Similarity=0.072 Sum_probs=26.2
Q ss_pred cccCCcEEEEEcCccCCcccccccc-cCCCC-EEEEcCCcccc
Q 038651 128 IVEFADAYIFVESIFNDYSSVGYSL-LLNKK-AILMQPDRIVV 168 (324)
Q Consensus 128 ~l~~aDlvl~lG~~~~~~~t~~~~~-~~~~~-iI~id~d~~~i 168 (324)
.+++||++|+|||++.-........ ..... +|-|+.++...
T Consensus 172 ~~~~aDlllvvGTSl~V~pa~~l~~~~~~~~~~v~iN~~~~~~ 214 (235)
T cd01408 172 DKEEADLLIVIGTSLKVAPFASLPSRVPSEVPRVLINREPVGH 214 (235)
T ss_pred HHhcCCEEEEECCCCeeccHHHHHHHHhCCCcEEEEeCCCCCC
Confidence 5788999999999996443222111 11223 77788887654
No 177
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=62.08 E-value=17 Score=35.38 Aligned_cols=54 Identities=9% Similarity=-0.028 Sum_probs=39.1
Q ss_pred CCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCC-CCc-------------cccCCcEEEEEcCc
Q 038651 87 AVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSA-KGM-------------IVEFADAYIFVESI 141 (324)
Q Consensus 87 AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~g-kg~-------------~l~~aDlvl~lG~~ 141 (324)
++|++|+.|.+....+..+.+.+..+..|+-+.. +.+ ++- .-.++|+||+||..
T Consensus 23 ~~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~-~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGG 90 (375)
T cd08194 23 GKRPLIVTDKVMVKLGLVDKLTDSLKKEGIESAI-FDDVVSEPTDESVEEGVKLAKEGGCDVIIALGGG 90 (375)
T ss_pred CCeEEEEcCcchhhcchHHHHHHHHHHCCCeEEE-ECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 5799999998887666778888888888886543 222 111 23589999999974
No 178
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=61.56 E-value=13 Score=36.34 Aligned_cols=56 Identities=7% Similarity=-0.051 Sum_probs=39.8
Q ss_pred cCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc-------------cccCCcEEEEEcCc
Q 038651 86 KAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM-------------IVEFADAYIFVESI 141 (324)
Q Consensus 86 ~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~-------------~l~~aDlvl~lG~~ 141 (324)
..+|++|+.|.++...+..+.+.+..+..|+.+..-.....- .-.++|+||+||..
T Consensus 20 ~~~k~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGG 88 (398)
T cd08178 20 GKKRAFIVTDRFMVKLGYVDKVIDVLKRRGVETEVFSDVEPDPSLETVRKGLELMNSFKPDTIIALGGG 88 (398)
T ss_pred CCCeEEEEcChhHHhCccHHHHHHHHHHCCCeEEEecCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 458999999988776667888888888888876532211111 22478999999973
No 179
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=61.42 E-value=23 Score=39.77 Aligned_cols=46 Identities=9% Similarity=0.149 Sum_probs=40.0
Q ss_pred cCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhh
Q 038651 207 SGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIE 252 (324)
Q Consensus 207 ~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~ 252 (324)
.++..|+...||+.|.-+.+.-|--|+-.+.+++++|+.|+.=.|-
T Consensus 484 ~~~~~v~a~iGDgTf~HSG~~al~~AV~~~~nit~~IL~N~~tAMT 529 (1159)
T PRK13030 484 TETKHVFQNLGDGTYFHSGSLAIRQAVAAGANITYKILYNDAVAMT 529 (1159)
T ss_pred cCCCCEEEEeccchhhhcCHHHHHHHHhcCCCeEEEEEeCCccccc
Confidence 3456789999999988777789999999999999999999987764
No 180
>cd06334 PBP1_ABC_ligand_binding_like_1 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=61.21 E-value=79 Score=30.07 Aligned_cols=55 Identities=11% Similarity=-0.010 Sum_probs=35.3
Q ss_pred CeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhh
Q 038651 26 SRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATI 81 (324)
Q Consensus 26 i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~I 81 (324)
|++|..=++....-++..+.|+-. -+|.++. |.+...++....-+...++|+|..
T Consensus 41 ielv~~D~~~~p~~a~~~a~~Li~~~~V~~i~-~~~S~~~~a~~~~~~~~~vp~i~~ 96 (351)
T cd06334 41 LEWEECDTGYEVPRGVECYERLKGEDGAVAFQ-GWSTGITEALIPKIAADKIPLMSG 96 (351)
T ss_pred EEEEEecCCCCcHHHHHHHHHHhccCCcEEEe-cCcHHHHHHhhHHHhhcCCcEEec
Confidence 788888888888888888888743 2343332 444434444444455678998865
No 181
>PTZ00409 Sir2 (Silent Information Regulator) protein; Provisional
Probab=60.68 E-value=3.7 Score=38.32 Aligned_cols=42 Identities=10% Similarity=0.102 Sum_probs=28.4
Q ss_pred cccCCcEEEEEcCccCCccccccccc--CCCC-EEEEcCCccccc
Q 038651 128 IVEFADAYIFVESIFNDYSSVGYSLL--LNKK-AILMQPDRIVVA 169 (324)
Q Consensus 128 ~l~~aDlvl~lG~~~~~~~t~~~~~~--~~~~-iI~id~d~~~i~ 169 (324)
.+++||++|++||++.-+....+... .... +|-|++++..+.
T Consensus 196 ~~~~aDlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~t~~~ 240 (271)
T PTZ00409 196 EIDKCDLLLVVGTSSSVSTATNLCYRAHRKKKKIVEVNISKTYIT 240 (271)
T ss_pred HHHcCCEEEEECCCCcccCHHHHHHHHHHcCCCEEEECCCCCCCC
Confidence 66899999999999965443322211 1233 889998887653
No 182
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=60.67 E-value=46 Score=33.29 Aligned_cols=64 Identities=14% Similarity=0.076 Sum_probs=39.7
Q ss_pred ceEEEE--eCCcchHHHHHHHHHHhhcCCcchhhhhhhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCC
Q 038651 50 VGAYVV--TFIVGRLSIINAIAGAYSENFPAATITALLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAK 125 (324)
Q Consensus 50 ~gv~~~--t~GpG~~N~~tgla~A~~d~~Pvl~It~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gk 125 (324)
+.+++. ..|.|=|-++.-+|..+.. ..+.+.++.....+..+.+++..+++++++|++.....+
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~------------~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~ 160 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKK------------KGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNK 160 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHH------------cCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCcc
Confidence 445543 4455555555556554432 223444444555667789999999999999998765433
No 183
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=60.57 E-value=16 Score=35.55 Aligned_cols=54 Identities=17% Similarity=0.104 Sum_probs=39.3
Q ss_pred CCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCC----Cc--------c--ccCCcEEEEEcCc
Q 038651 87 AVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAK----GM--------I--VEFADAYIFVESI 141 (324)
Q Consensus 87 AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gk----g~--------~--l~~aDlvl~lG~~ 141 (324)
.||++|+.|.++...+..+.+.+..++.++.+.. +.+- .. . -.++|+||+||..
T Consensus 29 ~~r~lvvt~~~~~~~g~~~~v~~~L~~~~i~~~~-~~~v~~~p~~~~v~~~~~~~~~~~~D~IiaiGGG 96 (379)
T TIGR02638 29 FKKALVVTDKDLIKFGVADKVTDLLDEAGIAYEL-FDEVKPNPTITVVKAGVAAFKASGADYLIAIGGG 96 (379)
T ss_pred CCEEEEEcCcchhhccchHHHHHHHHHCCCeEEE-ECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCh
Confidence 5799999998887666788898888888887653 2211 11 2 2478999999974
No 184
>TIGR03129 one_C_dehyd_B formylmethanofuran dehydrogenase subunit B. Members of this largely archaeal protein family are subunit B of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit C. Note that this model does not distinguish tungsten (FwdB) from molybdenum-containing (FmdB) forms of this enzyme.
Probab=60.44 E-value=24 Score=34.33 Aligned_cols=85 Identities=21% Similarity=0.183 Sum_probs=48.1
Q ss_pred hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEe--cC-CCC--------Cc------cc-cCCcEEEEEcCccCCc
Q 038651 84 LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAV--MP-SAK--------GM------IV-EFADAYIFVESIFNDY 145 (324)
Q Consensus 84 L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~t--t~-~gk--------g~------~l-~~aDlvl~lG~~~~~~ 145 (324)
|+++++++++.|+.. .......+.+|++.+|..+-. +. .+. |. -+ ++||+||++|+.+.+.
T Consensus 73 l~~~~~~~~~~~~~~-~~e~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~~~di~~~ad~il~~G~n~~~~ 151 (421)
T TIGR03129 73 LKNAKRPLIYGWSST-SCEAQRAGLELAEKLGAVIDNTASVCHGPSLLALQEVGWPSCTLGEVKNRADVIIYWGTNPMHA 151 (421)
T ss_pred HHhhcCCeEEEcccC-CHHHHHHHHHHHHHHCCCccccchhccccHHHHHHhcCCccccHHHHhhcCCEEEEEccCcccc
Confidence 666777877655543 334455778888888874321 10 000 11 23 3799999999987543
Q ss_pred ccccc-----------ccc-CCCC-EEEEcCCccccc
Q 038651 146 SSVGY-----------SLL-LNKK-AILMQPDRIVVA 169 (324)
Q Consensus 146 ~t~~~-----------~~~-~~~~-iI~id~d~~~i~ 169 (324)
....+ ... .+.. +|.||+...+..
T Consensus 152 ~p~~~~r~~~~~~~~~~~~~~~g~~lividp~~s~t~ 188 (421)
T TIGR03129 152 HPRHMSRYSVFPRGFFTQRGREDRTVIVVDPRKTDTA 188 (421)
T ss_pred CchHHhhhhhhhhhhhhhcccCCCEEEEECCCCCCcc
Confidence 22111 001 1223 899998776543
No 185
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=60.34 E-value=4 Score=37.38 Aligned_cols=42 Identities=12% Similarity=0.153 Sum_probs=28.0
Q ss_pred cccCCcEEEEEcCccCCccccccccc--CCCC-EEEEcCCccccc
Q 038651 128 IVEFADAYIFVESIFNDYSSVGYSLL--LNKK-AILMQPDRIVVA 169 (324)
Q Consensus 128 ~l~~aDlvl~lG~~~~~~~t~~~~~~--~~~~-iI~id~d~~~i~ 169 (324)
.+++||++|+|||++.-.....+... .... +|.|+.++..+.
T Consensus 175 ~~~~aDl~lviGTSl~V~pa~~l~~~~~~~g~~~i~iN~~~t~~d 219 (244)
T PRK14138 175 LSSKASLMIVMGSSLVVYPAAELPLITVRSGGKLVIVNLGETPLD 219 (244)
T ss_pred HHhcCCEEEEeCcCCeeecHhHHHHHHHHcCCeEEEEcCCCCCCC
Confidence 66899999999999964433222111 1223 888998887665
No 186
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=60.24 E-value=18 Score=35.16 Aligned_cols=55 Identities=16% Similarity=0.083 Sum_probs=38.4
Q ss_pred CCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc-----------c--ccCCcEEEEEcCc
Q 038651 87 AVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM-----------I--VEFADAYIFVESI 141 (324)
Q Consensus 87 AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~-----------~--l~~aDlvl~lG~~ 141 (324)
++|++|+.|.++...+..+.+.+..+..|+.+..-.....- . -.++|+||+||..
T Consensus 26 ~~~~lvvt~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IIaiGGG 93 (374)
T cd08189 26 VKKVLIVTDKGLVKLGLLDKVLEALEGAGIEYAVYDGVPPDPTIENVEAGLALYRENGCDAILAVGGG 93 (374)
T ss_pred CCeEEEEeCcchhhcccHHHHHHHHHhcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 57899999988876667788888888888876432111111 2 2589999999973
No 187
>cd01411 SIR2H SIR2H: Uncharacterized prokaryotic Sir2 homologs from several gram positive bacterial species and Fusobacteria; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span.
Probab=60.18 E-value=5.2 Score=36.16 Aligned_cols=42 Identities=19% Similarity=0.204 Sum_probs=27.4
Q ss_pred cccCCcEEEEEcCccCCcccccccccCC-CC-EEEEcCCccccc
Q 038651 128 IVEFADAYIFVESIFNDYSSVGYSLLLN-KK-AILMQPDRIVVA 169 (324)
Q Consensus 128 ~l~~aDlvl~lG~~~~~~~t~~~~~~~~-~~-iI~id~d~~~i~ 169 (324)
.++++|++|+|||++............+ +. +|.|+.++..+.
T Consensus 168 ~~~~~DlllviGTSl~v~p~~~l~~~~~~~~~~i~iN~~~~~~~ 211 (225)
T cd01411 168 AIEKADLLVIVGTSFVVYPFAGLIDYRQAGANLIAINKEPTQLD 211 (225)
T ss_pred HHhcCCEEEEECcCCeehhHHHHHHHHhCCCeEEEECCCCCCCC
Confidence 5678999999999885433222111122 33 899999887665
No 188
>PRK10867 signal recognition particle protein; Provisional
Probab=60.11 E-value=45 Score=33.30 Aligned_cols=35 Identities=11% Similarity=0.083 Sum_probs=26.7
Q ss_pred CcEEEECCCCCccchHHHHHHHHHHhCCcEEecCC
Q 038651 89 KPAMIGGPKLSVSKATIAFVELADACGYAFAVMPS 123 (324)
Q Consensus 89 rPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~ 123 (324)
+.+.++.....|+.+.+++..++++.|+||+....
T Consensus 130 ~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~ 164 (433)
T PRK10867 130 KKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGD 164 (433)
T ss_pred CcEEEEEccccchHHHHHHHHHHhhcCCeEEecCC
Confidence 34444445567788999999999999999997643
No 189
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=59.61 E-value=19 Score=34.98 Aligned_cols=55 Identities=15% Similarity=0.094 Sum_probs=38.4
Q ss_pred CCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc-----------c--ccCCcEEEEEcCc
Q 038651 87 AVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM-----------I--VEFADAYIFVESI 141 (324)
Q Consensus 87 AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~-----------~--l~~aDlvl~lG~~ 141 (324)
.||++|+.|.++...+..+.+.+..++.++.+..-....+- . -.++|+||+||..
T Consensus 26 ~~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGG 93 (376)
T cd08193 26 AKRVLVVTDPGILKAGLIDPLLASLEAAGIEVTVFDDVEADPPEAVVEAAVEAARAAGADGVIGFGGG 93 (376)
T ss_pred CCeEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 58999999988766667788888888888765422111111 2 2488999999965
No 190
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=59.20 E-value=54 Score=32.10 Aligned_cols=77 Identities=8% Similarity=-0.022 Sum_probs=52.9
Q ss_pred ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhhhhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc--
Q 038651 50 VGAYVVTFIVGRLSIINAIAGAYSENFPAATITALLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM-- 127 (324)
Q Consensus 50 ~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~-- 127 (324)
+-+++..+|.|=|.++..|+..+. ...-++.|.++-....+.++.++|..+++.+|+|+.....++..
T Consensus 139 ii~lvGptGvGKTTtiakLA~~~~----------~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~ 208 (374)
T PRK14722 139 VFALMGPTGVGKTTTTAKLAARCV----------MRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQL 208 (374)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH----------HhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHH
Confidence 444557888888888888887652 12111233344444446688999999999999999876665554
Q ss_pred ---cccCCcEEE
Q 038651 128 ---IVEFADAYI 136 (324)
Q Consensus 128 ---~l~~aDlvl 136 (324)
-+.+.|+||
T Consensus 209 ~l~~l~~~DlVL 220 (374)
T PRK14722 209 ALAELRNKHMVL 220 (374)
T ss_pred HHHHhcCCCEEE
Confidence 446778887
No 191
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=58.90 E-value=66 Score=29.88 Aligned_cols=36 Identities=14% Similarity=0.080 Sum_probs=26.5
Q ss_pred CcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCC
Q 038651 89 KPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSA 124 (324)
Q Consensus 89 rPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~g 124 (324)
+-|.++.....|.++.+++..++++.++|++....+
T Consensus 101 ~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~ 136 (272)
T TIGR00064 101 KSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEG 136 (272)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCC
Confidence 444445555566778899999999999999865543
No 192
>PF00766 ETF_alpha: Electron transfer flavoprotein FAD-binding domain; InterPro: IPR014731 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the C-terminal domain of the alpha subunit of both Group I and Group II ETFs.; PDB: 1O96_D 3CLR_D 1O97_D 3CLT_D 3CLU_D 3CLS_D 2A1U_A 2A1T_R 1EFV_A 1EFP_C ....
Probab=58.48 E-value=11 Score=28.94 Aligned_cols=53 Identities=21% Similarity=0.189 Sum_probs=32.2
Q ss_pred CcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCC--CCc-----------cccCCcEEEEEcCc
Q 038651 89 KPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSA--KGM-----------IVEFADAYIFVESI 141 (324)
Q Consensus 89 rPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~g--kg~-----------~l~~aDlvl~lG~~ 141 (324)
+-|+-+|.|+...+..+.+++||+.+|+-|-.|-.- .|+ ..=..++.|++|.+
T Consensus 8 ~~VV~~GrG~~~~e~~~l~~~LA~~lga~vg~SRp~vd~gw~p~~~qIG~sG~~v~P~lyia~GIS 73 (86)
T PF00766_consen 8 EVVVAGGRGVGSKENFELIEELAEALGAAVGASRPVVDAGWIPRERQIGQSGKTVAPKLYIAFGIS 73 (86)
T ss_dssp SEEEEE-GGG-STGGCHHHHHHHHHHT-EEEE-HHHHHTTSS-GGGBBSTTSB--T-SEEEEES--
T ss_pred CEEEEcCCCCCCHHHHHHHHHHHHHhCCchhccHHHHhCCCCchhhhcCCCCcEEeeeeeEeecch
Confidence 446677888887788899999999999999877211 111 23356788888754
No 193
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=57.85 E-value=37 Score=33.73 Aligned_cols=76 Identities=18% Similarity=0.144 Sum_probs=48.1
Q ss_pred EEEeCCcchHHHHHHHHHHhhcCCcchhhhhhhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc-----
Q 038651 53 YVVTFIVGRLSIINAIAGAYSENFPAATITALLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM----- 127 (324)
Q Consensus 53 ~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~----- 127 (324)
++..+|.|=|-++..||.++. +....+.|.++.....+.++.+++..+++.+++|+........+
T Consensus 226 ~vGptGvGKTTt~~kLA~~~~----------~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~ 295 (424)
T PRK05703 226 LVGPTGVGKTTTLAKLAARYA----------LLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALE 295 (424)
T ss_pred EECCCCCCHHHHHHHHHHHHH----------HhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHH
Confidence 345677777878888877765 01122344444444556678899999999999999765444333
Q ss_pred cccCCcEEEEE
Q 038651 128 IVEFADAYIFV 138 (324)
Q Consensus 128 ~l~~aDlvl~l 138 (324)
-+.++|+||+=
T Consensus 296 ~~~~~DlVlID 306 (424)
T PRK05703 296 QLRDCDVILID 306 (424)
T ss_pred HhCCCCEEEEe
Confidence 23456666654
No 194
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=57.77 E-value=23 Score=34.92 Aligned_cols=54 Identities=19% Similarity=0.223 Sum_probs=39.3
Q ss_pred CCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCC-CC---c--------c--ccCCcEEEEEcCc
Q 038651 87 AVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSA-KG---M--------I--VEFADAYIFVESI 141 (324)
Q Consensus 87 AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~g-kg---~--------~--l~~aDlvl~lG~~ 141 (324)
++|++|+.|.++...+..+.+.+..+..|+.+.. +.+ +. . . -.++|+||.||..
T Consensus 23 ~~~vlivt~~~~~~~g~~~~v~~~L~~~gi~~~~-f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGG 90 (414)
T cd08190 23 ARRVCLVTDPNLAQLPPVKVVLDSLEAAGINFEV-YDDVRVEPTDESFKDAIAFAKKGQFDAFVAVGGG 90 (414)
T ss_pred CCeEEEEECcchhhcchHHHHHHHHHHcCCcEEE-eCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 5899999999987777788888888888887653 221 11 1 2 2478999999964
No 195
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=57.52 E-value=27 Score=32.48 Aligned_cols=47 Identities=15% Similarity=0.207 Sum_probs=28.6
Q ss_pred ecCCCeEEEecCchHHhhh-HHHHHHHHHHhCCCeEEEEEeCCchhhhh
Q 038651 206 LSGNTAVIAETGDSWFNCQ-KDVDVSTMLRCEQKNIIFLINNGNYTIEV 253 (324)
Q Consensus 206 ~~~~~~vv~d~G~~~~~~~-~~qEL~Ta~r~~lpviivV~NN~~yg~~~ 253 (324)
..++..||+..||+++... .+.-|-.+-..+-+ .+||+||+...+-+
T Consensus 130 ~~~~~~vVaVIGDGalt~Gma~EALN~~g~~~~~-liVILNDN~mSIs~ 177 (270)
T PF13292_consen 130 KGEDRKVVAVIGDGALTGGMAFEALNNAGHLKSN-LIVILNDNEMSISP 177 (270)
T ss_dssp HTS---EEEEEETTGGGSHHHHHHHHHHHHHT-S-EEEEEEE-SBSSSB
T ss_pred cCCCCcEEEEECCcchhHHHHHHHHHHHHhcCCC-EEEEEeCCCcccCC
Confidence 3457778888999886332 24667778777766 56677888776544
No 196
>cd02752 MopB_Formate-Dh-Na-like Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=56.22 E-value=17 Score=38.18 Aligned_cols=66 Identities=15% Similarity=0.133 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhCCcEEecC---------------CCCCc------cccCCcEEEEEcCccCCccccccccc---C-C-CC
Q 038651 104 TIAFVELADACGYAFAVMP---------------SAKGM------IVEFADAYIFVESIFNDYSSVGYSLL---L-N-KK 157 (324)
Q Consensus 104 ~~~l~~lae~l~~Pv~tt~---------------~gkg~------~l~~aDlvl~lG~~~~~~~t~~~~~~---~-~-~~ 157 (324)
.-.+.+|++.+|.+.+... .|+|. -+++||+||++|+...+.....+... . + ..
T Consensus 121 ~~~~~kl~r~lGt~~id~~ar~C~~~tv~~l~~~~G~ga~tns~~Di~nAd~Ili~GsNpae~hPv~~~~i~~Ak~~~Ga 200 (649)
T cd02752 121 CYLIRKFARALGTNNLDHQARIUHSPTVAGLANTFGRGAMTNSWNDIKNADVILVMGGNPAEAHPVSFKWILEAKEKNGA 200 (649)
T ss_pred HHHHHHHHHHhCCCcccCCcchhhhHHHHHHHhhcCCCCCCCCHHHHhcCCEEEEECCChHHhCcHHHHHHHHHHHcCCC
Confidence 3356677777776544221 23332 46889999999999755433222211 1 2 33
Q ss_pred -EEEEcCCccccc
Q 038651 158 -AILMQPDRIVVA 169 (324)
Q Consensus 158 -iI~id~d~~~i~ 169 (324)
+|.||+...+..
T Consensus 201 klIvVDPR~t~Ta 213 (649)
T cd02752 201 KLIVVDPRFTRTA 213 (649)
T ss_pred eEEEEcCCCCchh
Confidence 999999876544
No 197
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=56.19 E-value=27 Score=34.29 Aligned_cols=61 Identities=18% Similarity=0.046 Sum_probs=41.8
Q ss_pred EEeCCcchHHHHHHHHHHhhcCCcchhhhhhhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecC
Q 038651 54 VVTFIVGRLSIINAIAGAYSENFPAATITALLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMP 122 (324)
Q Consensus 54 ~~t~GpG~~N~~tgla~A~~d~~Pvl~It~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~ 122 (324)
+..+|.|=|-++.-+|..+..+. .+-.+.|.++.....|.++.+++..+++.+|+||....
T Consensus 180 vGptGvGKTTT~aKLA~~~~~~~--------~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~ 240 (388)
T PRK12723 180 VGPTGVGKTTTIAKLAAIYGINS--------DDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIE 240 (388)
T ss_pred ECCCCCCHHHHHHHHHHHHHhhh--------ccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeC
Confidence 45667777777777776554211 01234566666667788899999999999999986543
No 198
>PRK11916 electron transfer flavoprotein subunit YdiR; Provisional
Probab=55.53 E-value=31 Score=32.86 Aligned_cols=79 Identities=18% Similarity=0.093 Sum_probs=51.0
Q ss_pred hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCC---CCCc-----------cccCCcEEEEEcCccCCccccc
Q 038651 84 LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPS---AKGM-----------IVEFADAYIFVESIFNDYSSVG 149 (324)
Q Consensus 84 L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~---gkg~-----------~l~~aDlvl~lG~~~~~~~t~~ 149 (324)
|.+|+ -++-.|.|+...+..+.+++||+.||.-|-.|-. ..|+ ..=..||-|++|-+=.-..+.+
T Consensus 191 L~~A~-vVV~~GrG~~~~e~~~~~~~LA~~LGaavG~SRp~vd~~gW~p~~~QIGqTGk~V~P~lYiA~GISGAiQH~aG 269 (312)
T PRK11916 191 LSKAK-RVVGVGRGLAAQDDLKMVHELAAVLNAEVGCSRPIAEGENWMERERYIGVSGVLLKSDLYLTLGISGQIQHMVG 269 (312)
T ss_pred cccCC-EEEECCCCCCChHHHHHHHHHHHHhCCEEEecHHHHccCCCCChhcEECCCCCCcCccEEEEeccccHHHHHhh
Confidence 55554 3444566766666789999999999998887632 1233 2235699999997632222222
Q ss_pred ccccCCCC-EEEEcCCcc
Q 038651 150 YSLLLNKK-AILMQPDRI 166 (324)
Q Consensus 150 ~~~~~~~~-iI~id~d~~ 166 (324)
. ...+ ||-|+.|+.
T Consensus 270 m---~~s~~IVAIN~Dp~ 284 (312)
T PRK11916 270 G---NGAKVIVAINKDKN 284 (312)
T ss_pred c---ccCCEEEEECCCCC
Confidence 2 1334 999999985
No 199
>COG2984 ABC-type uncharacterized transport system, periplasmic component [General function prediction only]
Probab=55.33 E-value=85 Score=30.06 Aligned_cols=122 Identities=12% Similarity=0.031 Sum_probs=85.7
Q ss_pred HHHHhhhcCCC---CeEeecCchHHHHHHHHHHhhhcC--ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh------
Q 038651 15 SLLDHLIAEPG---SRDVGCCNELNAGYAADGSARARA--VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA------ 83 (324)
Q Consensus 15 ~l~dal~~~~~---i~~i~~rhE~~A~~aAdgYaR~tg--~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~------ 83 (324)
.+-++|.+ .| ++|..-.-|...+-++.=.....+ +-|++++++|-+. ++..+-.+ .|+|+-..
T Consensus 50 G~~~aLk~-~G~~n~~i~~~na~~~~~~a~~iarql~~~~~dviv~i~tp~Aq----~~~s~~~~-iPVV~aavtd~v~a 123 (322)
T COG2984 50 GVKEALKD-AGYKNVKIDYQNAQGDLGTAAQIARQLVGDKPDVIVAIATPAAQ----ALVSATKT-IPVVFAAVTDPVGA 123 (322)
T ss_pred HHHHHHHh-cCccCeEEEeecCCCChHHHHHHHHHhhcCCCcEEEecCCHHHH----HHHHhcCC-CCEEEEccCchhhc
Confidence 34455544 24 488888888888888877666665 6777778777754 44444445 99988721
Q ss_pred --------------------------------hhcCCCcEEEECCCC-CccchHHHHHHHHHHhCCcEEecCCCCCc---
Q 038651 84 --------------------------------LLKAVKPAMIGGPKL-SVSKATIAFVELADACGYAFAVMPSAKGM--- 127 (324)
Q Consensus 84 --------------------------------L~~AkrPvIl~G~g~-~~~~a~~~l~~lae~l~~Pv~tt~~gkg~--- 127 (324)
+-.+||--++...+- ......+++.+.|++.|+-|++..--+..
T Consensus 124 ~Lv~~~~~pg~NvTGvsD~~~v~q~i~lik~~~Pnak~Igv~Y~p~E~ns~~l~eelk~~A~~~Gl~vve~~v~~~ndi~ 203 (322)
T COG2984 124 KLVKSLEQPGGNVTGVSDLLPVAQQIELIKALLPNAKSIGVLYNPGEANSVSLVEELKKEARKAGLEVVEAAVTSVNDIP 203 (322)
T ss_pred cCCccccCCCCceeecCCcchHHHHHHHHHHhCCCCeeEEEEeCCCCcccHHHHHHHHHHHHHCCCEEEEEecCcccccH
Confidence 557899977777665 33456789999999999999976543333
Q ss_pred -----cccCCcEEEEEcCcc
Q 038651 128 -----IVEFADAYIFVESIF 142 (324)
Q Consensus 128 -----~l~~aDlvl~lG~~~ 142 (324)
+..+.|+|+..=..+
T Consensus 204 ~a~~~l~g~~d~i~~p~dn~ 223 (322)
T COG2984 204 RAVQALLGKVDVIYIPTDNL 223 (322)
T ss_pred HHHHHhcCCCcEEEEecchH
Confidence 568889988875544
No 200
>PF07085 DRTGG: DRTGG domain; InterPro: IPR010766 This presumed domain is about 120 amino acids in length. It is found associated with CBS domains IPR000644 from INTERPRO, as well as the CbiA domain IPR002586 from INTERPRO. The function of this domain is unknown. It is named the DRTGG domain after some of the most conserved residues. This domain may be very distantly related to a pair of CBS domains. There are no significant sequence similarities, but its length and association with CBS domains supports this idea. ; PDB: 3L31_B 3L2B_A 2IOJ_A.
Probab=55.11 E-value=18 Score=28.17 Aligned_cols=36 Identities=17% Similarity=0.250 Sum_probs=23.5
Q ss_pred hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCC
Q 038651 84 LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPS 123 (324)
Q Consensus 84 L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~ 123 (324)
+...-+-+|+.|+. .-.+++.++|+..++||+.|+.
T Consensus 58 ~~~~i~~iIltg~~----~~~~~v~~la~~~~i~vi~t~~ 93 (105)
T PF07085_consen 58 IEAGIACIILTGGL----EPSEEVLELAKELGIPVISTPY 93 (105)
T ss_dssp CCTTECEEEEETT--------HHHHHHHHHHT-EEEE-SS
T ss_pred HHhCCCEEEEeCCC----CCCHHHHHHHHHCCCEEEEECC
Confidence 44444667777754 3567899999999999999875
No 201
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=54.85 E-value=27 Score=26.28 Aligned_cols=49 Identities=16% Similarity=0.050 Sum_probs=35.3
Q ss_pred CCcEEEECCCCCccch-HHHHHHHHHHhCCcEEecCCCCCc-cccCCcEEEE
Q 038651 88 VKPAMIGGPKLSVSKA-TIAFVELADACGYAFAVMPSAKGM-IVEFADAYIF 137 (324)
Q Consensus 88 krPvIl~G~g~~~~~a-~~~l~~lae~l~~Pv~tt~~gkg~-~l~~aDlvl~ 137 (324)
+|-++++|.|...+.. ...+++..++.++++-.....-+- . .++|+||.
T Consensus 1 ~kilvvCg~G~gtS~ml~~ki~~~~~~~~~~~~v~~~~~~~~~-~~~Dliit 51 (87)
T cd05567 1 KKIVFACDAGMGSSAMGASVLRKKLKKAGLEIPVTNSAIDELP-SDADLVVT 51 (87)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHHCCCceEEEEcchhhCC-CCCCEEEE
Confidence 4678999999977665 678999999989876655433322 3 77887765
No 202
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=54.55 E-value=43 Score=34.95 Aligned_cols=82 Identities=18% Similarity=0.186 Sum_probs=50.1
Q ss_pred EEEecCchHHhhhHH-HHHHHHHHhCCCeEEEEEeCCchhhhhhhh-------CCC-----CCCC---CCCCHHHHHHHH
Q 038651 212 VIAETGDSWFNCQKD-VDVSTMLRCEQKNIIFLINNGNYTIEVEIH-------DGP-----YNVI---ENWNYTGLVEAF 275 (324)
Q Consensus 212 vv~d~G~~~~~~~~~-qEL~Ta~r~~lpviivV~NN~~yg~~~~~~-------~~~-----~~~l---~~~df~~lA~a~ 275 (324)
+.+.+||++++=... .-.+-|-.++|.=.|++.+++...+.-... ..+ +..+ ..-|+..|.+|
T Consensus 151 tYvl~GDGclmEGvs~EA~slAG~l~L~kLIvlyD~N~IsiDG~~~~~f~ed~~~RfeAyGW~vi~~~DG~D~e~I~~A- 229 (663)
T COG0021 151 TYVLVGDGCLMEGVSHEAASLAGHLKLGKLIVLYDSNDISIDGDTSLSFTEDVAKRFEAYGWNVIRVIDGHDLEAIDKA- 229 (663)
T ss_pred EEEEecCchHhcccHHHHHHHHhhcCCCcEEEEEeCCCceeccCcccccchhHHHHHHhcCCeEEEecCCCCHHHHHHH-
Confidence 445678877533222 445667788999999999888887632110 001 1111 22366666664
Q ss_pred HHHHHHhHHhCCCCeEEEEEEec
Q 038651 276 QNAIETAAVEKKDCLCFIEAIVH 298 (324)
Q Consensus 276 G~al~~a~~~~~~~p~lIeV~id 298 (324)
+++|. ...++|++|+|++-
T Consensus 230 ---i~~Ak-~~~dkPtlI~~kTi 248 (663)
T COG0021 230 ---IEEAK-ASTDKPTLIIVKTI 248 (663)
T ss_pred ---HHHHH-hcCCCCeEEEEEee
Confidence 56665 34789999999973
No 203
>PRK03363 fixB putative electron transfer flavoprotein FixB; Provisional
Probab=54.52 E-value=32 Score=32.84 Aligned_cols=79 Identities=16% Similarity=0.091 Sum_probs=51.0
Q ss_pred hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCC---CCc-----------cccCCcEEEEEcCccCCccccc
Q 038651 84 LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSA---KGM-----------IVEFADAYIFVESIFNDYSSVG 149 (324)
Q Consensus 84 L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~g---kg~-----------~l~~aDlvl~lG~~~~~~~t~~ 149 (324)
|.+|+ -|+-.|.|+...+..+.+++||+.+|.-|-.|-.. .|+ ..=..||-|++|-+=.-..+.+
T Consensus 192 L~~A~-vVVsgGRG~~~~E~~~l~eeLA~~LGaavg~SRp~vd~~gW~p~~~QIGqTGk~V~P~lYiA~GISGaiQH~~G 270 (313)
T PRK03363 192 LDKAR-LVVSVGRGIGSKENIALAEQLCKAIGAELACSRPVAENEKWMEHERYVGISNLMLKPELYLAVGISGQIQHMVG 270 (313)
T ss_pred cccCC-EEEEcCCCCCCHHHHHHHHHHHHHhCCeEEecHHHHccCCCCCHHheecCCCCCcCccEEEEEccccHHHHHhh
Confidence 44453 34445667776778899999999999998876322 123 2225699999996632222222
Q ss_pred ccccCCCC-EEEEcCCcc
Q 038651 150 YSLLLNKK-AILMQPDRI 166 (324)
Q Consensus 150 ~~~~~~~~-iI~id~d~~ 166 (324)
. -..+ ||-|+.|+.
T Consensus 271 m---~~s~~IVAIN~Dp~ 285 (313)
T PRK03363 271 A---NASQTIFAINKDKN 285 (313)
T ss_pred c---ccCCEEEEEcCCCC
Confidence 2 2334 899999975
No 204
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=54.44 E-value=22 Score=34.55 Aligned_cols=54 Identities=13% Similarity=0.091 Sum_probs=39.1
Q ss_pred CCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc------------cc--cCCcEEEEEcCc
Q 038651 87 AVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM------------IV--EFADAYIFVESI 141 (324)
Q Consensus 87 AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~------------~l--~~aDlvl~lG~~ 141 (324)
.+|++|+.|.+....+..+++.+..+..++.+. .+.+-.- .+ .++|+||.||..
T Consensus 28 ~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~-~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 95 (377)
T cd08176 28 FKKALIVTDKGLVKIGVVEKVTDVLDEAGIDYV-IYDGVKPNPTITNVKDGLAVFKKEGCDFIISIGGG 95 (377)
T ss_pred CCeEEEECCchHhhcCcHHHHHHHHHHcCCeEE-EeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 478999989887665788889998888888764 3333111 22 479999999973
No 205
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=54.41 E-value=25 Score=34.25 Aligned_cols=54 Identities=19% Similarity=0.241 Sum_probs=38.9
Q ss_pred cCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCC-C---Cc--------c--ccCCcEEEEEcC
Q 038651 86 KAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSA-K---GM--------I--VEFADAYIFVES 140 (324)
Q Consensus 86 ~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~g-k---g~--------~--l~~aDlvl~lG~ 140 (324)
.+||++|+.|..+...+..+.+.+..++.|+.+.. +.+ . .. . -.++|+||.||.
T Consensus 29 g~~~~lvvtd~~~~~~g~~~~v~~~L~~~g~~~~~-~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG 96 (382)
T PRK10624 29 GFKKALIVTDKTLVKCGVVAKVTDVLDAAGLAYEI-YDGVKPNPTIEVVKEGVEVFKASGADYLIAIGG 96 (382)
T ss_pred CCCEEEEEeCcchhhCcchHHHHHHHHHCCCeEEE-eCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 35788899998887777888999999988876543 221 1 11 2 247999999997
No 206
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=54.17 E-value=25 Score=34.30 Aligned_cols=71 Identities=6% Similarity=-0.052 Sum_probs=47.6
Q ss_pred eCCcchHHHHHHHHHHhhcCCcchhhhhhhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCC-------c-
Q 038651 56 TFIVGRLSIINAIAGAYSENFPAATITALLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKG-------M- 127 (324)
Q Consensus 56 t~GpG~~N~~tgla~A~~d~~Pvl~It~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg-------~- 127 (324)
..|+|..+-+.-.... ..+||++|+.|.+....+..+.+.+..++.|+.+. .+.+-. +
T Consensus 13 ~~G~g~~~~l~~~~~~-------------~g~~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~-~f~~v~~np~~~~v~ 78 (383)
T PRK09860 13 VIGADSLTDAMNMMAD-------------YGFTRTLIVTDNMLTKLGMAGDVQKALEERNIFSV-IYDGTQPNPTTENVA 78 (383)
T ss_pred EECcCHHHHHHHHHHh-------------cCCCEEEEEcCcchhhCccHHHHHHHHHHcCCeEE-EeCCCCCCcCHHHHH
Confidence 4677766555443222 13589999988887767788889998888888753 222210 1
Q ss_pred ------cccCCcEEEEEcC
Q 038651 128 ------IVEFADAYIFVES 140 (324)
Q Consensus 128 ------~l~~aDlvl~lG~ 140 (324)
.-.++|+||.||.
T Consensus 79 ~~~~~~~~~~~D~IiaiGG 97 (383)
T PRK09860 79 AGLKLLKENNCDSVISLGG 97 (383)
T ss_pred HHHHHHHHcCCCEEEEeCC
Confidence 2258999999996
No 207
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=53.95 E-value=27 Score=33.98 Aligned_cols=72 Identities=19% Similarity=0.141 Sum_probs=47.0
Q ss_pred eCCcchHHHHHHHHHHhhcCCcchhhhhhhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCC-C---c----
Q 038651 56 TFIVGRLSIINAIAGAYSENFPAATITALLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAK-G---M---- 127 (324)
Q Consensus 56 t~GpG~~N~~tgla~A~~d~~Pvl~It~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gk-g---~---- 127 (324)
..|+|+.+-+......+ .++|++|+.|..+...+..+.+.+..+..++.+.. +.+- . .
T Consensus 10 ~~G~g~l~~l~~~l~~~-------------g~~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~-~~~v~~~p~~~~v~ 75 (377)
T cd08188 10 IFGRGALKLAGRYARRL-------------GAKKVLLVSDPGVIKAGWVDRVIESLEEAGLEYVV-FSDVSPNPRDEEVM 75 (377)
T ss_pred EECcCHHHHHHHHHHHc-------------CCCeEEEEeCcchhhCccHHHHHHHHHHcCCeEEE-eCCCCCCCCHHHHH
Confidence 45777766554433211 35799999998876666778888888887876642 2211 1 1
Q ss_pred ------cccCCcEEEEEcCc
Q 038651 128 ------IVEFADAYIFVESI 141 (324)
Q Consensus 128 ------~l~~aDlvl~lG~~ 141 (324)
.-.++|+||+||..
T Consensus 76 ~~~~~~~~~~~d~IIaiGGG 95 (377)
T cd08188 76 AGAELYLENGCDVIIAVGGG 95 (377)
T ss_pred HHHHHHHhcCCCEEEEeCCc
Confidence 22589999999964
No 208
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=53.45 E-value=44 Score=31.09 Aligned_cols=74 Identities=15% Similarity=0.096 Sum_probs=47.2
Q ss_pred EEeCCcchHHHHHHHHHHhhcCCcchhhhhhhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc-----c
Q 038651 54 VVTFIVGRLSIINAIAGAYSENFPAATITALLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM-----I 128 (324)
Q Consensus 54 ~~t~GpG~~N~~tgla~A~~d~~Pvl~It~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~-----~ 128 (324)
+..+|.|=|-++..|+..+..+ ...+.|.++-..-.+.++.+++..+++.+++|+........+ .
T Consensus 200 vGptGvGKTTt~~kLa~~~~~~----------~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~ 269 (282)
T TIGR03499 200 VGPTGVGKTTTLAKLAARFVLE----------HGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDR 269 (282)
T ss_pred ECCCCCCHHHHHHHHHHHHHHH----------cCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHH
Confidence 3567778888888888776421 011233333334455678899999999999999754433322 3
Q ss_pred ccCCcEEEE
Q 038651 129 VEFADAYIF 137 (324)
Q Consensus 129 l~~aDlvl~ 137 (324)
+.+.|+||+
T Consensus 270 ~~~~d~vli 278 (282)
T TIGR03499 270 LRDKDLILI 278 (282)
T ss_pred ccCCCEEEE
Confidence 456777764
No 209
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=53.05 E-value=15 Score=35.02 Aligned_cols=37 Identities=11% Similarity=0.003 Sum_probs=28.9
Q ss_pred HHHHHHHHhCCcEEecCCCCCc-------cccCCcEEEEEcCcc
Q 038651 106 AFVELADACGYAFAVMPSAKGM-------IVEFADAYIFVESIF 142 (324)
Q Consensus 106 ~l~~lae~l~~Pv~tt~~gkg~-------~l~~aDlvl~lG~~~ 142 (324)
-...+||.+|+||+||+.|.=- +=.+-|+||.||...
T Consensus 43 lA~~iaellNA~Vlttpwg~ynes~~~eI~~lnpd~VLIIGGp~ 86 (337)
T COG2247 43 LALPIAELLNAPVLTTPWGIYNESVLDEIIELNPDLVLIIGGPI 86 (337)
T ss_pred HhhHHHHHhCCeeEecCcccccHHHHHHHHhhCCceEEEECCCC
Confidence 3567999999999999955422 335899999999776
No 210
>KOG1182 consensus Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion]
Probab=52.84 E-value=28 Score=33.29 Aligned_cols=87 Identities=21% Similarity=0.223 Sum_probs=45.4
Q ss_pred CCCeEEEecCchHHhhh-HHHHHHHHHHhCCCeEEEEEeCCchhhhhhhh-----C-----CCCCCC-----CCCCHHHH
Q 038651 208 GNTAVIAETGDSWFNCQ-KDVDVSTMLRCEQKNIIFLINNGNYTIEVEIH-----D-----GPYNVI-----ENWNYTGL 271 (324)
Q Consensus 208 ~~~~vv~d~G~~~~~~~-~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~-----~-----~~~~~l-----~~~df~~l 271 (324)
.++++|+-.|+++-.-. ...-|--|+-...|+++ ++.|+||.+.-... + ++...| ..-|--++
T Consensus 215 nnac~V~yfGdG~aSEGD~HA~~NfAAtle~Pvif-~CRNNG~AISTptseQyr~DGIa~kG~aYGi~sIRVDGnD~lAv 293 (432)
T KOG1182|consen 215 NNACAVTYFGDGAASEGDAHAAFNFAATLECPVIF-FCRNNGWAISTPTSEQYRGDGIAVKGPAYGIRSIRVDGNDALAV 293 (432)
T ss_pred CCeEEEEEecCCcccccchhhhhhHHHHhCCCEEE-EEcCCCeeeccccHHHhcCCceEEeccccceEEEEecCcchHHH
Confidence 34678887777642111 01446667788899655 56677888743221 1 111111 11222222
Q ss_pred HHHHHHHHHHhHHhCCCCeEEEEEEe
Q 038651 272 VEAFQNAIETAAVEKKDCLCFIEAIV 297 (324)
Q Consensus 272 A~a~G~al~~a~~~~~~~p~lIeV~i 297 (324)
=.|.-.|=+.|+ ..++|+|||.++
T Consensus 294 YnA~k~ARe~av--~e~rPvliEamt 317 (432)
T KOG1182|consen 294 YNAVKEAREMAV--TEQRPVLIEAMT 317 (432)
T ss_pred HHHHHHHHHHHH--hccCchhhhhhh
Confidence 222222444443 677999999987
No 211
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=52.77 E-value=41 Score=25.84 Aligned_cols=46 Identities=15% Similarity=0.187 Sum_probs=31.7
Q ss_pred EEEECCCCCccchHHHHHHHHHHhCCcEEec--CCC--CC---c--cccCCcEEEEEc
Q 038651 91 AMIGGPKLSVSKATIAFVELADACGYAFAVM--PSA--KG---M--IVEFADAYIFVE 139 (324)
Q Consensus 91 vIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt--~~g--kg---~--~l~~aDlvl~lG 139 (324)
++++|+-- +-...+++++++.|.-+..- ..+ +. + .+++||+||++=
T Consensus 2 vliVGG~~---~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t 56 (97)
T PF10087_consen 2 VLIVGGRE---DRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFT 56 (97)
T ss_pred EEEEcCCc---ccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEe
Confidence 56777743 34678999999999887755 011 00 1 788999999873
No 212
>PTZ00408 NAD-dependent deacetylase; Provisional
Probab=52.61 E-value=5.8 Score=36.32 Aligned_cols=42 Identities=12% Similarity=0.146 Sum_probs=26.7
Q ss_pred cccCCcEEEEEcCccCCccccccccc--CCCC-EEEEcCCccccc
Q 038651 128 IVEFADAYIFVESIFNDYSSVGYSLL--LNKK-AILMQPDRIVVA 169 (324)
Q Consensus 128 ~l~~aDlvl~lG~~~~~~~t~~~~~~--~~~~-iI~id~d~~~i~ 169 (324)
++++||++|+|||++.-.....+... .... +|.|+.++....
T Consensus 169 ~~~~~DlllviGTSl~V~pa~~l~~~a~~~g~~vi~IN~~~~~~~ 213 (242)
T PTZ00408 169 VMSKTDLFVAVGTSGNVYPAAGFVGRAQFYGATTLELNLEEGTNY 213 (242)
T ss_pred HHHhCCEEEEEccCCccccHHHHHHHHHHcCCeEEEECCCCCCCC
Confidence 45789999999999964433222111 1233 888998875443
No 213
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=52.57 E-value=31 Score=33.34 Aligned_cols=55 Identities=15% Similarity=0.125 Sum_probs=38.3
Q ss_pred CCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc-----------c--ccCCcEEEEEcCc
Q 038651 87 AVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM-----------I--VEFADAYIFVESI 141 (324)
Q Consensus 87 AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~-----------~--l~~aDlvl~lG~~ 141 (324)
++|++|+.|......+..+.+.+..+..++.+..-....+- . -.++|+||+||..
T Consensus 23 ~~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IiaiGGG 90 (370)
T cd08551 23 GRKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREEGCDGVIAVGGG 90 (370)
T ss_pred CCeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 57999999988765577888888888877765422111111 2 2478999999974
No 214
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=52.50 E-value=66 Score=33.41 Aligned_cols=46 Identities=17% Similarity=0.274 Sum_probs=29.5
Q ss_pred EecCCCeEEEecCchHHhhh-HHHHHHHHHHhCC-CeEEEEEeCCchhh
Q 038651 205 MLSGNTAVIAETGDSWFNCQ-KDVDVSTMLRCEQ-KNIIFLINNGNYTI 251 (324)
Q Consensus 205 ~~~~~~~vv~d~G~~~~~~~-~~qEL~Ta~r~~l-pviivV~NN~~yg~ 251 (324)
.-.+++.||+..||+.+... .+.-|-.+- ..+ .-.+||+||+...+
T Consensus 133 ~~g~~~~vvaVIGDGAlt~GmA~EALN~ag-~~~~~~~iVILNDNeMSI 180 (627)
T COG1154 133 LKGEDRNVVAVIGDGALTGGMAFEALNNAG-ADLKSNLIVILNDNEMSI 180 (627)
T ss_pred hcCCCCcEEEEECCccccchHHHHHHhhhh-hccCCCEEEEEeCCCccc
Confidence 33467789999999986443 124444554 233 34778889988765
No 215
>cd03415 CbiX_CbiC Archaeal sirohydrochlorin cobalt chelatase (CbiX) single domain. Proteins in this subgroup contain a single CbiX domain N-terminal to a precorrin-8X methylmutase (CbiC) domain. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, while CbiC catalyzes the conversion of cobalt-precorrin 8 to cobyrinic acid by methyl rearrangement. Both CbiX and CbiC are involved in vitamin B12 biosynthesis.
Probab=52.48 E-value=36 Score=27.86 Aligned_cols=34 Identities=9% Similarity=-0.130 Sum_probs=27.1
Q ss_pred cEEEECCCCCccchHHHHHHHHHHhC----CcEEecCC
Q 038651 90 PAMIGGPKLSVSKATIAFVELADACG----YAFAVMPS 123 (324)
Q Consensus 90 PvIl~G~g~~~~~a~~~l~~lae~l~----~Pv~tt~~ 123 (324)
.+|++|.|.+...+.+.+++|++++. .||.+.++
T Consensus 2 ~lllvgHGSR~~~~~~~~~~la~~l~~~~~~~v~~afl 39 (125)
T cd03415 2 AIIIITHGSRRNTFNEDMEEWAAYLERKLGVPVYLTYN 39 (125)
T ss_pred EEEEEecCCCChHHHHHHHHHHHHHHhccCCceEEEEe
Confidence 47999999999999999999998884 45555544
No 216
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=52.22 E-value=26 Score=34.39 Aligned_cols=74 Identities=15% Similarity=0.025 Sum_probs=49.1
Q ss_pred EeCCcchHHHHHHHHHHhhcCCcchhhhhhhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc-------
Q 038651 55 VTFIVGRLSIINAIAGAYSENFPAATITALLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM------- 127 (324)
Q Consensus 55 ~t~GpG~~N~~tgla~A~~d~~Pvl~It~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~------- 127 (324)
+..|+|..+-+...... ...+|++|+.|.++...+..+.+.+..++.|+.+..-..-+.-
T Consensus 30 i~fG~g~~~~l~~~~~~-------------~g~~~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~ 96 (395)
T PRK15454 30 TLCGPGAVSSCGQQAQT-------------RGLKHLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVC 96 (395)
T ss_pred EEECcCHHHHHHHHHHh-------------cCCCEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHH
Confidence 34788877666544332 1357888888887776777888998888889876432111111
Q ss_pred ------cccCCcEEEEEcCc
Q 038651 128 ------IVEFADAYIFVESI 141 (324)
Q Consensus 128 ------~l~~aDlvl~lG~~ 141 (324)
.-.++|+||.||..
T Consensus 97 ~~~~~~r~~~~D~IiavGGG 116 (395)
T PRK15454 97 AAVAQLRESGCDGVIAFGGG 116 (395)
T ss_pred HHHHHHHhcCcCEEEEeCCh
Confidence 22589999999964
No 217
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=52.00 E-value=28 Score=33.91 Aligned_cols=55 Identities=16% Similarity=0.042 Sum_probs=37.8
Q ss_pred CCCcEEEECCCCCc-cchHHHHHHHHHHhCCcEEecCCCC---Cc--------cc--cCCcEEEEEcCc
Q 038651 87 AVKPAMIGGPKLSV-SKATIAFVELADACGYAFAVMPSAK---GM--------IV--EFADAYIFVESI 141 (324)
Q Consensus 87 AkrPvIl~G~g~~~-~~a~~~l~~lae~l~~Pv~tt~~gk---g~--------~l--~~aDlvl~lG~~ 141 (324)
.||++|+.|..... .+..+.+.+..++.|+.+..-.... .. .+ .++|+||+||..
T Consensus 26 ~kr~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGG 94 (383)
T cd08186 26 ISKVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLGREFGAQAVIAIGGG 94 (383)
T ss_pred CCEEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 58999999887643 5667888998888888664322111 11 22 478999999973
No 218
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=51.18 E-value=41 Score=32.99 Aligned_cols=56 Identities=13% Similarity=0.004 Sum_probs=42.3
Q ss_pred cCCCcEEEECCCCCccchHHHHHHHHHHhCCcEE--ecCCCCC--------c---cccCCcEEEEEcCc
Q 038651 86 KAVKPAMIGGPKLSVSKATIAFVELADACGYAFA--VMPSAKG--------M---IVEFADAYIFVESI 141 (324)
Q Consensus 86 ~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~--tt~~gkg--------~---~l~~aDlvl~lG~~ 141 (324)
..||++|+.+.+....+..+++.+..+..++.+. ....+-= + --.++|+||++|-.
T Consensus 28 g~~r~liVTd~~~~~~g~~~~v~~~L~~~~i~~~if~~v~p~P~~~~v~~~~~~~~~~~~D~iIalGGG 96 (377)
T COG1454 28 GAKRALIVTDRGLAKLGLLDKVLDSLDAAGIEYEVFDEVEPEPTIETVEAGAEVAREFGPDTIIALGGG 96 (377)
T ss_pred CCCceEEEECCccccchhHHHHHHHHHhcCCeEEEecCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 4699999999999888889999999999997643 3322211 1 33589999999964
No 219
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=50.43 E-value=35 Score=33.26 Aligned_cols=53 Identities=11% Similarity=0.028 Sum_probs=38.2
Q ss_pred CCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCC----c----------cccCCcEEEEEcCc
Q 038651 88 VKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKG----M----------IVEFADAYIFVESI 141 (324)
Q Consensus 88 krPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg----~----------~l~~aDlvl~lG~~ 141 (324)
||++|+.|.+....+..+.+.+..++.|+.+.. +.+-- . .-.++|+||+||..
T Consensus 23 ~~~livt~~~~~~~~~~~~v~~~L~~~~~~~~~-f~~v~~~~~~~~v~~~~~~~~~~~~D~IIaiGGG 89 (386)
T cd08191 23 SRALIVTDERMAGTPVFAELVQALAAAGVEVEV-FDGVLPDLPRSELCDAASAAARAGPDVIIGLGGG 89 (386)
T ss_pred CeEEEEECcchhhcchHHHHHHHHHHcCCeEEE-ECCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 789999998877667888888888888877542 22221 0 22488999999964
No 220
>PRK00481 NAD-dependent deacetylase; Provisional
Probab=50.33 E-value=10 Score=34.47 Aligned_cols=42 Identities=14% Similarity=0.228 Sum_probs=27.2
Q ss_pred cccCCcEEEEEcCccCCcccccccc--cCCCC-EEEEcCCccccc
Q 038651 128 IVEFADAYIFVESIFNDYSSVGYSL--LLNKK-AILMQPDRIVVA 169 (324)
Q Consensus 128 ~l~~aDlvl~lG~~~~~~~t~~~~~--~~~~~-iI~id~d~~~i~ 169 (324)
.++++|++|+|||++.-........ ..++. +|-|+.++..+.
T Consensus 174 ~~~~~dl~lviGTsl~V~p~~~l~~~~~~~~~~~i~iN~~~~~~~ 218 (242)
T PRK00481 174 ALEEADLFIVIGTSLVVYPAAGLPYEAREHGAKTVEINLEPTPLD 218 (242)
T ss_pred HHhcCCEEEEECCCceEcCHhHHHHHHHHCCCeEEEECCCCCCCC
Confidence 4568899999999985432222211 12333 899999987665
No 221
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=50.23 E-value=33 Score=33.03 Aligned_cols=53 Identities=11% Similarity=0.089 Sum_probs=37.2
Q ss_pred CCcEEEECCCC-CccchHHHHHHHHHHhCCcEEecCCC-C---Cc--------c--ccCCcEEEEEcCc
Q 038651 88 VKPAMIGGPKL-SVSKATIAFVELADACGYAFAVMPSA-K---GM--------I--VEFADAYIFVESI 141 (324)
Q Consensus 88 krPvIl~G~g~-~~~~a~~~l~~lae~l~~Pv~tt~~g-k---g~--------~--l~~aDlvl~lG~~ 141 (324)
||++|+.|.+. ...+..+++.+..+..|+.+.. +.+ . .. . =.++|+||+||..
T Consensus 26 ~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~-~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 93 (357)
T cd08181 26 KRALIVTGKSSAKKNGSLDDVTKALEELGIEYEI-FDEVEENPSLETIMEAVEIAKKFNADFVIGIGGG 93 (357)
T ss_pred CEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEE-eCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 79999999887 4466778888888888886543 222 1 11 2 2478999999964
No 222
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=49.77 E-value=85 Score=31.33 Aligned_cols=65 Identities=14% Similarity=0.077 Sum_probs=41.4
Q ss_pred ceEEEE--eCCcchHHHHHHHHHHhhcCCcchhhhhhhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCC
Q 038651 50 VGAYVV--TFIVGRLSIINAIAGAYSENFPAATITALLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKG 126 (324)
Q Consensus 50 ~gv~~~--t~GpG~~N~~tgla~A~~d~~Pvl~It~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg 126 (324)
+.+++. -.|.|=|-++.-||..+.. +-++++++. ....|..+.++++.++++.++||+.-..+..
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~-----------~G~kV~lV~-~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~d 166 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQR-----------KGFKPCLVC-ADTFRAGAFDQLKQNATKARIPFYGSYTESD 166 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH-----------CCCCEEEEc-CcccchhHHHHHHHHhhccCCeEEeecCCCC
Confidence 555543 4555555556566654331 234555554 4466678999999999999999986554443
No 223
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=49.52 E-value=36 Score=33.07 Aligned_cols=52 Identities=15% Similarity=0.103 Sum_probs=37.7
Q ss_pred CCcEEEECCCC-CccchHHHHHHHHHHhCCcEEecCCC-CC---c--------cc--cCCcEEEEEcC
Q 038651 88 VKPAMIGGPKL-SVSKATIAFVELADACGYAFAVMPSA-KG---M--------IV--EFADAYIFVES 140 (324)
Q Consensus 88 krPvIl~G~g~-~~~~a~~~l~~lae~l~~Pv~tt~~g-kg---~--------~l--~~aDlvl~lG~ 140 (324)
||++|+.|.+. ...+..+++.+..++.|+.+.. +.+ .. . .+ .++|+||.||.
T Consensus 26 ~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~-~~~v~~~p~~~~v~~~~~~~~~~~~D~IiavGG 92 (380)
T cd08185 26 KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVV-FDKVEPNPTTTTVMEGAALAREEGCDFVVGLGG 92 (380)
T ss_pred CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEE-eCCccCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 79999999887 3567888899988888887642 211 11 1 22 47999999997
No 224
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=49.01 E-value=48 Score=30.16 Aligned_cols=46 Identities=11% Similarity=0.061 Sum_probs=27.8
Q ss_pred ecCCCeEEEecCchHHhhhHH----HHHHHHHHhCCCeEEEEEeCCchhh
Q 038651 206 LSGNTAVIAETGDSWFNCQKD----VDVSTMLRCEQKNIIFLINNGNYTI 251 (324)
Q Consensus 206 ~~~~~~vv~d~G~~~~~~~~~----qEL~Ta~r~~lpviivV~NN~~yg~ 251 (324)
-.++.+++|..||+...-..+ +-...+..+++.-++.|+.|++|.+
T Consensus 77 d~~d~iv~~vvGDGE~eeG~lA~~W~a~~~~~~~~~~~vLpIld~Ng~~i 126 (227)
T cd02011 77 DNPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKI 126 (227)
T ss_pred cCCCcEEEEEECcCHHHHHhHHHHHHhhhhhcccccCCeEEEEEcCCCcc
Confidence 346778899999987533221 1112233455666666777888875
No 225
>PF02603 Hpr_kinase_N: HPr Serine kinase N terminus; InterPro: IPR011126 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the N-terminal region of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller. The blades are formed by two N-terminal domains each, and the compact central hub assembles the C-terminal kinase domains []. ; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 1KNX_B 1KO7_A.
Probab=48.86 E-value=24 Score=28.79 Aligned_cols=37 Identities=22% Similarity=0.298 Sum_probs=26.6
Q ss_pred hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCC
Q 038651 84 LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPS 123 (324)
Q Consensus 84 L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~ 123 (324)
+-+.+-|.|++-.|. ...+++.++|++.++|++.|..
T Consensus 77 l~~~~~P~iIvt~~~---~~p~~l~e~a~~~~ipll~t~~ 113 (127)
T PF02603_consen 77 LFSYNPPCIIVTRGL---EPPPELIELAEKYNIPLLRTPL 113 (127)
T ss_dssp HCTTT-S-EEEETTT------HHHHHHHHHCT--EEEESS
T ss_pred HhCCCCCEEEEECcC---CCCHHHHHHHHHhCCcEEEcCC
Confidence 667889999998887 4678999999999999999875
No 226
>cd02774 MopB_Res-Cmplx1_Nad11-M MopB_Res_Cmplx1_Nad11_M: Mitochondrial-encoded NADH-quinone oxidoreductase/respiratory complex I, the second domain of the Nad11/75-kDa subunit of some protists. NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH-quinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. The Nad11 subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evi
Probab=48.66 E-value=14 Score=35.86 Aligned_cols=31 Identities=26% Similarity=0.343 Sum_probs=22.6
Q ss_pred hhcCCCcEEEECCCCCccch----HHHHHHHHHHh
Q 038651 84 LLKAVKPAMIGGPKLSVSKA----TIAFVELADAC 114 (324)
Q Consensus 84 L~~AkrPvIl~G~g~~~~~a----~~~l~~lae~l 114 (324)
|++||+|+|++|.++..... ...+.+|++.+
T Consensus 218 L~~ak~p~Ii~G~~~~~~~~~~~~~~~~~~l~~~~ 252 (366)
T cd02774 218 LKKSKKPLIIIGSSFSLRKNYSFIISKLKNFSSNN 252 (366)
T ss_pred HhcCCCCEEEEChHHhCCCCHHHHHHHHHHHHHhh
Confidence 88999999999999975433 33455566664
No 227
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=48.51 E-value=30 Score=33.17 Aligned_cols=54 Identities=17% Similarity=0.129 Sum_probs=37.4
Q ss_pred CCCcEEEECCCCCccchHHHHHHHHHHhCCcE--EecCCC---CCc---------cccCCcEEEEEcCc
Q 038651 87 AVKPAMIGGPKLSVSKATIAFVELADACGYAF--AVMPSA---KGM---------IVEFADAYIFVESI 141 (324)
Q Consensus 87 AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv--~tt~~g---kg~---------~l~~aDlvl~lG~~ 141 (324)
.||++|+.|..+.... .+.+.+..++.++.+ +.-..+ +.. +.+++|+||+||..
T Consensus 23 ~~~~livtd~~~~~~~-~~~v~~~l~~~~i~~~~~~~~~~~~~pt~~~v~~~~~~~~~~~d~IIaIGGG 90 (348)
T cd08175 23 YKKALIVADENTYAAA-GKKVEALLKRAGVVVLLIVLPAGDLIADEKAVGRVLKELERDTDLIIAVGSG 90 (348)
T ss_pred CCcEEEEECCcHHHHH-HHHHHHHHHHCCCeeEEeecCCCcccCCHHHHHHHHHHhhccCCEEEEECCc
Confidence 5789999988776543 678888888888855 333333 222 22379999999974
No 228
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.09 E-value=28 Score=30.10 Aligned_cols=41 Identities=20% Similarity=0.306 Sum_probs=31.4
Q ss_pred CCCc-EEEECCCCCcc----chHHHHHHHHHHhCCcEEecCCCCCc
Q 038651 87 AVKP-AMIGGPKLSVS----KATIAFVELADACGYAFAVMPSAKGM 127 (324)
Q Consensus 87 AkrP-vIl~G~g~~~~----~a~~~l~~lae~l~~Pv~tt~~gkg~ 127 (324)
.+.| ++++|.-+... -..++..+||+++|+|.+.|....|.
T Consensus 122 cE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~ 167 (219)
T KOG0081|consen 122 CENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTGT 167 (219)
T ss_pred cCCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccCc
Confidence 4666 56677766432 24678999999999999999888776
No 229
>cd01407 SIR2-fam SIR2 family of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer.
Probab=48.04 E-value=9.4 Score=34.15 Aligned_cols=42 Identities=12% Similarity=0.259 Sum_probs=26.4
Q ss_pred cccCCcEEEEEcCccCCcccccccccC--CCC-EEEEcCCccccc
Q 038651 128 IVEFADAYIFVESIFNDYSSVGYSLLL--NKK-AILMQPDRIVVA 169 (324)
Q Consensus 128 ~l~~aDlvl~lG~~~~~~~t~~~~~~~--~~~-iI~id~d~~~i~ 169 (324)
.++++|++|+|||++.-.....+.... .+. +|-|+.++....
T Consensus 164 ~~~~~Dl~lvlGTSl~V~p~~~l~~~~~~~~~~~i~iN~~~~~~~ 208 (218)
T cd01407 164 ALAKADLLLVIGTSLQVYPAAGLPLYAPERGAPVVIINLEPTPAD 208 (218)
T ss_pred HHhcCCEEEEeCCCcccccHHHHHHHHHHCCCeEEEECCCCCCCC
Confidence 445689999999998644332221111 233 888888876543
No 230
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=48.03 E-value=93 Score=29.64 Aligned_cols=58 Identities=14% Similarity=0.113 Sum_probs=38.4
Q ss_pred EeCCcchHHHHHHHHHHhhcCCcchhhhhhhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCC
Q 038651 55 VTFIVGRLSIINAIAGAYSENFPAATITALLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSA 124 (324)
Q Consensus 55 ~t~GpG~~N~~tgla~A~~d~~Pvl~It~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~g 124 (324)
...|.|=|-++.-||..+. ...+-|.+++....+.++.+++..++++.++|++....+
T Consensus 121 GpnGsGKTTt~~kLA~~l~------------~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~ 178 (318)
T PRK10416 121 GVNGVGKTTTIGKLAHKYK------------AQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEG 178 (318)
T ss_pred CCCCCcHHHHHHHHHHHHH------------hcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCC
Confidence 3445554555555555432 233445666666677778899999999999999876544
No 231
>PLN00022 electron transfer flavoprotein subunit alpha; Provisional
Probab=47.61 E-value=34 Score=33.22 Aligned_cols=79 Identities=23% Similarity=0.187 Sum_probs=50.2
Q ss_pred hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCC--CCc-----------cccCCcEEEEEcCccCCcccccc
Q 038651 84 LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSA--KGM-----------IVEFADAYIFVESIFNDYSSVGY 150 (324)
Q Consensus 84 L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~g--kg~-----------~l~~aDlvl~lG~~~~~~~t~~~ 150 (324)
|.+|+ -|+-.|.|+...+..+.+++||+.||.-|-.|-.. .|+ ..=..||-|++|-+=.-..+.+.
T Consensus 234 L~~A~-vVVsgGRGv~~~en~~l~eeLA~~LGaavGaSRp~vD~GW~p~~~QIGqTGk~V~P~lYIA~GISGAiQH~~Gm 312 (356)
T PLN00022 234 LGSAK-VVVTGGRGLKSAENFKMLEKLADKLGGAVGASRAAVDAGFVPNDLQVGQTGKIVAPELYIAVGISGAIQHLAGM 312 (356)
T ss_pred cccCC-EEEECCCccCCHHHHHHHHHHHHHhCCceeccHHHHhCCCCChHheeccCCCCcCCcEEEEEecchHHHHHhhc
Confidence 44443 34445566665667899999999999988877321 122 23357999999966322222221
Q ss_pred cccCCCC-EEEEcCCcc
Q 038651 151 SLLLNKK-AILMQPDRI 166 (324)
Q Consensus 151 ~~~~~~~-iI~id~d~~ 166 (324)
...+ ||-||.|+.
T Consensus 313 ---~~s~~IVAIN~D~~ 326 (356)
T PLN00022 313 ---KDSKVIVAINKDAD 326 (356)
T ss_pred ---ccCCEEEEECCCCC
Confidence 2344 999999975
No 232
>COG1440 CelA Phosphotransferase system cellobiose-specific component IIB [Carbohydrate transport and metabolism]
Probab=47.02 E-value=38 Score=26.82 Aligned_cols=54 Identities=13% Similarity=0.136 Sum_probs=40.9
Q ss_pred CCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc---cccCCcEEEEEcCcc
Q 038651 88 VKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM---IVEFADAYIFVESIF 142 (324)
Q Consensus 88 krPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~---~l~~aDlvl~lG~~~ 142 (324)
++.++++..|...+=.....++.|+.-|..+.-..-+.+- .+.++|++| ||...
T Consensus 2 k~IlLvC~aGmSTSlLV~Km~~aA~~kg~~~~I~A~s~~e~~~~~~~~DvvL-lGPQv 58 (102)
T COG1440 2 KKILLVCAAGMSTSLLVTKMKKAAESKGKDVTIEAYSETELSEYIDNADVVL-LGPQV 58 (102)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHhCCCceEEEEechhHHHHhhhcCCEEE-EChHH
Confidence 5678999999988778899999999988777654333322 778999876 67554
No 233
>PRK13761 hypothetical protein; Provisional
Probab=46.83 E-value=37 Score=30.86 Aligned_cols=43 Identities=23% Similarity=0.153 Sum_probs=34.7
Q ss_pred hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc
Q 038651 84 LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM 127 (324)
Q Consensus 84 L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~ 127 (324)
|.-||+|||=+-|-+. +=+.+++.+|++.+|+++=..+.-+.-
T Consensus 64 LLlA~~PVISVNGN~A-AL~p~eiveLa~~~~A~iEVNLF~RT~ 106 (248)
T PRK13761 64 LLLAKHPVISVNGNTA-ALVPEEIVELAEALNAKLEVNLFYRTE 106 (248)
T ss_pred HHhcCCCeEEEcchHH-hhChHHHHHHHHHhCCCEEEEeccCCH
Confidence 6779999998876654 345789999999999999888776643
No 234
>cd00296 SIR2 SIR2 superfamily of proteins includes silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation, where the acetyl group from the lysine epsilon-amino group is transferred to the ADP-ribose moiety of NAD+, producing nicotinamide and the novel metabolite O-acetyl-ADP-ribose. Sir2 proteins, also known as sirtuins, are found in all eukaryotes and many archaea and prokaryotes and have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The oligomerization state of Sir2 appears to be organism-dependent, sometimes occurring as a monomer and sometimes as a multimer. Also included in this superfamily is a group of uncharacterized Sir2-like proteins which lack certain key catalytic
Probab=46.82 E-value=9.1 Score=33.99 Aligned_cols=41 Identities=10% Similarity=0.141 Sum_probs=27.4
Q ss_pred cccCCcEEEEEcCccCCcccccccccC--CCC-EEEEcCCcccc
Q 038651 128 IVEFADAYIFVESIFNDYSSVGYSLLL--NKK-AILMQPDRIVV 168 (324)
Q Consensus 128 ~l~~aDlvl~lG~~~~~~~t~~~~~~~--~~~-iI~id~d~~~i 168 (324)
.+.++|++|++|+++.+......-... ... ++-|+.++...
T Consensus 166 ~~~~~d~llviGtSl~v~~~~~l~~~~~~~~~~~~~in~~~~~~ 209 (222)
T cd00296 166 ALLEADLVLVIGTSLTVYPAARLLLRAPERGAPVVIINREPTPA 209 (222)
T ss_pred HHhcCCEEEEECCCccccCHHHHHHHHHHCCCcEEEECCCCCCC
Confidence 456799999999999876544322111 233 88888887654
No 235
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=46.40 E-value=1.5e+02 Score=24.10 Aligned_cols=31 Identities=10% Similarity=0.071 Sum_probs=20.5
Q ss_pred CchHHhhhHHHHHHHHHHhCCCeEEEEEeCCch
Q 038651 217 GDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNY 249 (324)
Q Consensus 217 G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~y 249 (324)
|.+...+ +.-|.++...++|+++++-..+.+
T Consensus 68 gpg~~~~--~~~l~~a~~~~~Pvl~i~~~~~~~ 98 (154)
T cd06586 68 GTGLLNA--INGLADAAAEHLPVVFLIGARGIS 98 (154)
T ss_pred CCcHHHH--HHHHHHHHhcCCCEEEEeCCCChh
Confidence 5544322 355779999999988887555444
No 236
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=46.23 E-value=91 Score=32.56 Aligned_cols=53 Identities=23% Similarity=0.125 Sum_probs=42.8
Q ss_pred CcCCCC-chHHHHhhhcCC----CCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcch
Q 038651 7 SSSPAD-SSSLLDHLIAEP----GSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGR 61 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~----~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~ 61 (324)
+.+||. ..++.|.|.+.. ++.+=..-||-.|.-+|-| |...| .|++..- +||.
T Consensus 35 aGYpGtPstei~e~la~~~~~l~~vy~e~s~NEkvA~e~a~G-A~~~G~ral~~mK-hVGl 93 (640)
T COG4231 35 AGYPGTPSTELIETLAKAKKILGDVYFEWSLNEKVALETAAG-ASYAGVRALVTMK-HVGL 93 (640)
T ss_pred eccCCCCcHHHHHHHHHhhhhcCcEEEEecccHHHHHHHHHH-hhhcCceeeEEec-cccc
Confidence 568999 999999998754 4778888999999999999 66677 6777654 7774
No 237
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=45.31 E-value=39 Score=31.26 Aligned_cols=26 Identities=15% Similarity=0.185 Sum_probs=19.6
Q ss_pred CCcEEecCCCCCc-----cccCCcEEEEEcC
Q 038651 115 GYAFAVMPSAKGM-----IVEFADAYIFVES 140 (324)
Q Consensus 115 ~~Pv~tt~~gkg~-----~l~~aDlvl~lG~ 140 (324)
.+|.++...|+|. .+..+|.++++-.
T Consensus 136 ~VP~IsVI~G~~~gGgA~a~~~~D~v~m~~~ 166 (256)
T PRK12319 136 KVPIIAIIIGEGGSGGALALAVADQVWMLEN 166 (256)
T ss_pred CCCEEEEEeCCcCcHHHHHhhcCCEEEEecC
Confidence 5888888888765 5568888887753
No 238
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=45.07 E-value=33 Score=34.22 Aligned_cols=125 Identities=18% Similarity=0.122 Sum_probs=84.1
Q ss_pred HHHHhhhcC-------CCCeEeecCchHHHHHHHHHHhhh------------cC-ceEEE-EeCCcchHHHHHHHHHHhh
Q 038651 15 SLLDHLIAE-------PGSRDVGCCNELNAGYAADGSARA------------RA-VGAYV-VTFIVGRLSIINAIAGAYS 73 (324)
Q Consensus 15 ~l~dal~~~-------~~i~~i~~rhE~~A~~aAdgYaR~------------tg-~gv~~-~t~GpG~~N~~tgla~A~~ 73 (324)
-|+.||.+- .|=+||.+.....-.-|-||-+=. .| -+-++ +.-.-|.|+....|.+|..
T Consensus 259 TLL~Ale~GVYnHipGDGRE~VVT~~~avkirAEDGR~V~~vDISpFI~~LP~g~dT~~FsT~~ASGSTSqAAnI~EAlE 338 (448)
T PF09818_consen 259 TLLEALERGVYNHIPGDGREFVVTDPDAVKIRAEDGRSVEGVDISPFINNLPGGKDTTCFSTENASGSTSQAANIMEALE 338 (448)
T ss_pred HHHHHHHhcccCCCCCCCceEEEECCCceEEEecCCceEeCccchHHHhhCCCCCCCCcccccCCCchHHHHHHHHHHHH
Confidence 366666531 257889888887777776764321 23 23344 4556799999999999999
Q ss_pred cCCcchhh---hh-----hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCccccCCcEEEEEc
Q 038651 74 ENFPAATI---TA-----LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGMIVEFADAYIFVE 139 (324)
Q Consensus 74 d~~Pvl~I---t~-----L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~~l~~aDlvl~lG 139 (324)
.+.++|+| |+ +..++-+-++...----.--.+.+++|-+++|+-.+--..|-|.++..||.||.+-
T Consensus 339 ~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Ggsgdy~~vAD~Vi~Md 412 (448)
T PF09818_consen 339 AGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGGSGDYFDVADRVIMMD 412 (448)
T ss_pred cCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEeccchhhHhhCCEEEEec
Confidence 99999999 32 22222222222211111246788999999999988876677777999999999875
No 239
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=44.98 E-value=1.4e+02 Score=24.41 Aligned_cols=37 Identities=5% Similarity=-0.032 Sum_probs=25.2
Q ss_pred EEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhh
Q 038651 213 IAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTI 251 (324)
Q Consensus 213 v~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~ 251 (324)
++-.|.+...+ +.-|..|...++|+++++..-..+..
T Consensus 64 ~~~~gpG~~n~--~~~l~~A~~~~~Pll~i~~~~~~~~~ 100 (155)
T cd07035 64 LVTSGPGLTNA--VTGLANAYLDSIPLLVITGQRPTAGE 100 (155)
T ss_pred EEcCCCcHHHH--HHHHHHHHhhCCCEEEEeCCCccccc
Confidence 33335544333 25699999999999999887666543
No 240
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=44.40 E-value=1.3e+02 Score=30.07 Aligned_cols=35 Identities=14% Similarity=0.102 Sum_probs=27.0
Q ss_pred CcEEEECCCCCccchHHHHHHHHHHhCCcEEecCC
Q 038651 89 KPAMIGGPKLSVSKATIAFVELADACGYAFAVMPS 123 (324)
Q Consensus 89 rPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~ 123 (324)
+.+.++.....|+.+.+++..++++.++|++....
T Consensus 129 ~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~ 163 (428)
T TIGR00959 129 KKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGK 163 (428)
T ss_pred CeEEEEeccccchHHHHHHHHHHHhcCCceEecCC
Confidence 44455555567778899999999999999997554
No 241
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=43.25 E-value=30 Score=33.12 Aligned_cols=54 Identities=15% Similarity=-0.007 Sum_probs=36.4
Q ss_pred CCCcEEEECCCCCccchHHHHHHHHHHhCCcEEe-cCCCCCc---------c--ccCCcEEEEEcCc
Q 038651 87 AVKPAMIGGPKLSVSKATIAFVELADACGYAFAV-MPSAKGM---------I--VEFADAYIFVESI 141 (324)
Q Consensus 87 AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~t-t~~gkg~---------~--l~~aDlvl~lG~~ 141 (324)
.||++|+.|.+... +..+.+.+..+..|+.+.. ...+--- . -.++|+||+||..
T Consensus 22 ~~r~livt~~~~~~-~~~~~v~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 87 (351)
T cd08170 22 GKRALIIADEFVLD-LVGAKIEESLAAAGIDARFEVFGGECTRAEIERLAEIARDNGADVVIGIGGG 87 (351)
T ss_pred CCeEEEEECHHHHH-HHHHHHHHHHHhCCCeEEEEEeCCcCCHHHHHHHHHHHhhcCCCEEEEecCc
Confidence 48899999887765 6777888888887887532 1211111 2 2488999999964
No 242
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=42.79 E-value=72 Score=31.57 Aligned_cols=75 Identities=13% Similarity=0.055 Sum_probs=47.3
Q ss_pred EEEeCCcchHHHHHHHHHHhhcCCcchhhhhhhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc-----
Q 038651 53 YVVTFIVGRLSIINAIAGAYSENFPAATITALLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM----- 127 (324)
Q Consensus 53 ~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~----- 127 (324)
++...|.|=|.++..|+..+. .+ .+.+.++-....+.++.+++..+++.+++|+........+
T Consensus 211 lvGptGvGKTTt~akLA~~l~-----------~~-g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~ 278 (407)
T PRK12726 211 LIGQTGVGKTTTLVKLGWQLL-----------KQ-NRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQ 278 (407)
T ss_pred EECCCCCCHHHHHHHHHHHHH-----------Hc-CCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHH
Confidence 344567787777777775432 12 2344444455567788999999999999999864333222
Q ss_pred cc---cCCcEEEEEc
Q 038651 128 IV---EFADAYIFVE 139 (324)
Q Consensus 128 ~l---~~aDlvl~lG 139 (324)
.+ +++|+||+=.
T Consensus 279 ~l~~~~~~D~VLIDT 293 (407)
T PRK12726 279 YMTYVNCVDHILIDT 293 (407)
T ss_pred HHHhcCCCCEEEEEC
Confidence 11 3567777543
No 243
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=42.51 E-value=1.2e+02 Score=28.24 Aligned_cols=98 Identities=19% Similarity=-0.004 Sum_probs=63.1
Q ss_pred CCCeEeecCchHHHHHHHHHHhhh-cCceEEEEeCCcchHHHHHHHHHHhhcCC-cchhhh------------h------
Q 038651 24 PGSRDVGCCNELNAGYAADGSARA-RAVGAYVVTFIVGRLSIINAIAGAYSENF-PAATIT------------A------ 83 (324)
Q Consensus 24 ~~i~~i~~rhE~~A~~aAdgYaR~-tg~gv~~~t~GpG~~N~~tgla~A~~d~~-Pvl~It------------~------ 83 (324)
.+..++.......|.=.|-=-.-. .|--|+++|.||= .+-..+-.|++=+. -.++|+ +
T Consensus 29 ~gv~~~in~~D~~AvEeAlrLke~~~~~eV~vlt~Gp~--~a~~~lr~aLAmGaDraili~d~~~~~~d~~~ta~~Laa~ 106 (260)
T COG2086 29 SGVPLSINPFDLNAVEEALRLKEKGYGGEVTVLTMGPP--QAEEALREALAMGADRAILITDRAFAGADPLATAKALAAA 106 (260)
T ss_pred CCCCcccChhhHHHHHHHHHhhccCCCceEEEEEecch--hhHHHHHHHHhcCCCeEEEEecccccCccHHHHHHHHHHH
Confidence 478888888888887777533332 2345778888853 33444444443211 112222 1
Q ss_pred hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCC
Q 038651 84 LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPS 123 (324)
Q Consensus 84 L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~ 123 (324)
+.+.+.=+|+.|......++.+-=..+||.||+|.+|...
T Consensus 107 ~~~~~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v~ 146 (260)
T COG2086 107 VKKIGPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYVS 146 (260)
T ss_pred HHhcCCCEEEEecccccCCccchHHHHHHHhCCceeeeEE
Confidence 3344444999999998777777778899999999998754
No 244
>PF13399 LytR_C: LytR cell envelope-related transcriptional attenuator
Probab=42.41 E-value=61 Score=24.29 Aligned_cols=47 Identities=28% Similarity=0.199 Sum_probs=34.4
Q ss_pred CCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCccccCCcEEEEEcCccC
Q 038651 88 VKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGMIVEFADAYIFVESIFN 143 (324)
Q Consensus 88 krPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~~l~~aDlvl~lG~~~~ 143 (324)
+.-.|+.+.+. .++.++|++.|+++.+..-.. ...+|+.|+||..|.
T Consensus 43 ~~t~I~y~~~~-----~~~A~~la~~l~~~~~~~~~~----~~~~~v~vvlG~Df~ 89 (90)
T PF13399_consen 43 ETTTIYYGPGD-----EAAARELAAALGGAEIVVDPD----RQDADVVVVLGKDFQ 89 (90)
T ss_pred CCEEEEECCCC-----HHHHHHHHHHCCCceEEecCC----CCCCCEEEEEeCCcC
Confidence 56677776543 455688999999887765432 356899999998874
No 245
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=42.14 E-value=1.2e+02 Score=28.04 Aligned_cols=100 Identities=15% Similarity=-0.083 Sum_probs=66.2
Q ss_pred CCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCc-chhhh------------h------
Q 038651 24 PGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFP-AATIT------------A------ 83 (324)
Q Consensus 24 ~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~P-vl~It------------~------ 83 (324)
.+++++....+..|.=+|---....| --|.++|.||-..-.-..|-.|++=+.- .++|+ +
T Consensus 28 ~~~~~~iN~~D~~AlE~Alrlke~~~g~~Vtvvs~Gp~~a~~~~~lr~aLAmGaD~avli~d~~~~g~D~~~tA~~La~a 107 (256)
T PRK03359 28 SKADAKISQYDLNAIEAACQLKQQAAEAQVTALSVGGKALTNAKGRKDVLSRGPDELIVVIDDQFEQALPQQTASALAAA 107 (256)
T ss_pred CCCccccChhhHHHHHHHHHHhhhcCCCEEEEEEECCcchhhHHHHHHHHHcCCCEEEEEecCcccCcCHHHHHHHHHHH
Confidence 46888888888888887765555443 4566778898643333444544442222 22232 1
Q ss_pred hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCC
Q 038651 84 LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPS 123 (324)
Q Consensus 84 L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~ 123 (324)
+++-.-=+|++|......+...-=-.+||.||+|.+|...
T Consensus 108 i~~~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~ 147 (256)
T PRK03359 108 AQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVS 147 (256)
T ss_pred HHHhCCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEE
Confidence 4444677899999887766666777899999999998754
No 246
>PTZ00410 NAD-dependent SIR2; Provisional
Probab=42.14 E-value=14 Score=35.82 Aligned_cols=39 Identities=8% Similarity=0.133 Sum_probs=25.0
Q ss_pred cccCCcEEEEEcCccCCcccccccccC-CCC-EEEEcCCcc
Q 038651 128 IVEFADAYIFVESIFNDYSSVGYSLLL-NKK-AILMQPDRI 166 (324)
Q Consensus 128 ~l~~aDlvl~lG~~~~~~~t~~~~~~~-~~~-iI~id~d~~ 166 (324)
.+++||++|+|||++.-+......... ... +|.|+.++.
T Consensus 202 ~~~~aDllLVIGTSL~V~Paa~l~~~a~~~~pvviIN~e~~ 242 (349)
T PTZ00410 202 DIPEAELLLIIGTSLQVHPFALLACVVPKDVPRVLFNLERV 242 (349)
T ss_pred HHHhCCEEEEECcCCcccCHHHHHHHHhcCCCEEEECcccc
Confidence 557899999999999654332221111 223 888888765
No 247
>cd06327 PBP1_SBP_like_1 Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Periplasmic solute-binding domain of active transport proteins that belong to the type I periplasmic binding fold protein family. Solute binding proteins are the primary specific receptors that initiate uptake of a broad range of solutes, including amino acids, peptides and inorganic ions. The members are predicted to have a similar function to an active transport system for short chain amides and urea by sequence comparison and phylogenetic analysis. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus may also be involved in transport of amino acids.
Probab=41.81 E-value=1.6e+02 Score=27.29 Aligned_cols=56 Identities=13% Similarity=-0.113 Sum_probs=33.2
Q ss_pred CCeEeecCchHHHHHHHHHHhhhc-CceEEEEeCCcchHHHHHHH-HHHhhcCCcchhh
Q 038651 25 GSRDVGCCNELNAGYAADGSARAR-AVGAYVVTFIVGRLSIINAI-AGAYSENFPAATI 81 (324)
Q Consensus 25 ~i~~i~~rhE~~A~~aAdgYaR~t-g~gv~~~t~GpG~~N~~tgl-a~A~~d~~Pvl~I 81 (324)
.++++..=++....-+...+.|+- .-+|.++. ||..+....++ .-+...++|+|..
T Consensus 39 ~v~l~~~D~~~~p~~a~~~~~~l~~~~~V~avi-G~~~s~~~~a~~~~~~~~~vp~i~~ 96 (334)
T cd06327 39 PIELVVADHQNKADVAAAKAREWIDRDGVDMIV-GGPNSAVALAVQEVAREKKKIYIVT 96 (334)
T ss_pred EEEEEEecCCCCchHHHHHHHHHHhhcCceEEE-CCccHHHHHHHHHHHHHhCceEEec
Confidence 377887777777777788888864 23444433 44333333333 3334468888865
No 248
>PRK09330 cell division protein FtsZ; Validated
Probab=41.06 E-value=94 Score=30.55 Aligned_cols=30 Identities=10% Similarity=-0.043 Sum_probs=22.6
Q ss_pred EEEEeCCcchHHHHHHHHHHhhcCCcchhh
Q 038651 52 AYVVTFIVGRLSIINAIAGAYSENFPAATI 81 (324)
Q Consensus 52 v~~~t~GpG~~N~~tgla~A~~d~~Pvl~I 81 (324)
+.++--|-|..|+++-|...-..++..+++
T Consensus 16 IkViGvGG~G~Nav~~m~~~~~~~v~fia~ 45 (384)
T PRK09330 16 IKVIGVGGGGGNAVNRMIEEGIQGVEFIAA 45 (384)
T ss_pred EEEEEECCcHHHHHHHHHHcCCCCceEEEE
Confidence 344444666689999999988888888877
No 249
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=41.03 E-value=52 Score=24.55 Aligned_cols=51 Identities=18% Similarity=0.149 Sum_probs=35.0
Q ss_pred CCcEEEECCCCCccc-hHHHHHHHHHHhCCcEEecCCCC-Cc--cccCCcEEEEE
Q 038651 88 VKPAMIGGPKLSVSK-ATIAFVELADACGYAFAVMPSAK-GM--IVEFADAYIFV 138 (324)
Q Consensus 88 krPvIl~G~g~~~~~-a~~~l~~lae~l~~Pv~tt~~gk-g~--~l~~aDlvl~l 138 (324)
+|-++++|.|...+. ....+++.....++++..+...- .. ..+++|+||.-
T Consensus 1 ~~ilivC~~G~~tS~~l~~~i~~~~~~~~i~~~v~~~~~~~~~~~~~~~Dliist 55 (89)
T cd05566 1 KKILVACGTGVATSTVVASKVKELLKENGIDVKVEQCKIAEVPSLLDDADLIVST 55 (89)
T ss_pred CEEEEECCCCccHHHHHHHHHHHHHHHCCCceEEEEecHHHhhcccCCCcEEEEc
Confidence 467899999987653 46788888899999876532111 11 45789977764
No 250
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=40.95 E-value=66 Score=36.22 Aligned_cols=114 Identities=12% Similarity=-0.039 Sum_probs=71.1
Q ss_pred CCcCCCC-chHHHHhhhcCC------CCeEeecCchHHHHHHHHHHhh--------hcC-ceEEEEeCCcchHHHHHHHH
Q 038651 6 PSSSPAD-SSSLLDHLIAEP------GSRDVGCCNELNAGYAADGSAR--------ARA-VGAYVVTFIVGRLSIINAIA 69 (324)
Q Consensus 6 ~~~~pG~-~~~l~dal~~~~------~i~~i~~rhE~~A~~aAdgYaR--------~tg-~gv~~~t~GpG~~N~~tgla 69 (324)
-|.+||+ ...+.+.|.+.. +|.+-..-||-.|+-||-|-+. ..| .|.+ .-=|||.==+.=.+-
T Consensus 48 vsgYpGsP~~~i~~~l~~~~~~l~~~~i~~e~~~NEkvA~e~a~Gaq~~~~~~~~~~~Gv~~l~-~~K~~GvnvaaD~l~ 126 (1159)
T PRK13030 48 VSGYRGSPLGGVDQALWKAKKLLDASDIRFLPGINEELAATAVLGTQQVEADPERTVDGVFAMW-YGKGPGVDRAGDALK 126 (1159)
T ss_pred EEEeCCCCHHHHHHHHHHhhhhhcccceEEeecCCHHHHHHHHHHhccccccCCccccceEEEE-ecCcCCcccchhHHH
Confidence 3679999 999999997643 3999999999999999999883 344 3333 346788422222333
Q ss_pred HHhhcCC----cchhhhh-----------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEe
Q 038651 70 GAYSENF----PAATITA-----------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAV 120 (324)
Q Consensus 70 ~A~~d~~----Pvl~It~-----------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~t 120 (324)
.+-.-++ =||+|++ ...|+=||+-=-.---..+....--+|.|+.|+||.-
T Consensus 127 ~~n~~G~~~~GG~v~v~gDDpg~~SSq~eqdSr~~~~~a~iPvl~Ps~~qE~~d~~~~a~~lSr~~~~pV~l 198 (1159)
T PRK13030 127 HGNAYGSSPHGGVLVVAGDDHGCVSSSMPHQSDFALIAWHMPVLNPANVQEYLDFGLYGWALSRYSGAWVGF 198 (1159)
T ss_pred HHHhhcCCCCCcEEEEEecCCCCccCcCHHHHHHHHHHcCCceeCCCCHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 2222222 4566643 5667777776432111122333455677888888863
No 251
>cd01412 SIRT5_Af1_CobB SIRT5_Af1_CobB: Eukaryotic, archaeal and prokaryotic group (class3) which includes human sirtuin SIRT5, Archaeoglobus fulgidus Sir2-Af1, and E. coli CobB; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, metabolic enzymes, and life span. CobB is a bacterial sirtuin that deacetylates acetyl-CoA synthetase at an active site lysine to stimulate its enzymatic activity.
Probab=39.28 E-value=18 Score=32.39 Aligned_cols=40 Identities=15% Similarity=0.203 Sum_probs=25.5
Q ss_pred cCCcEEEEEcCccCCcccccccc--cCCCC-EEEEcCCccccc
Q 038651 130 EFADAYIFVESIFNDYSSVGYSL--LLNKK-AILMQPDRIVVA 169 (324)
Q Consensus 130 ~~aDlvl~lG~~~~~~~t~~~~~--~~~~~-iI~id~d~~~i~ 169 (324)
+++|++|++||++.-........ ..+.. +|-|+.++..+.
T Consensus 163 ~~~dl~lvlGTsl~v~p~~~l~~~~~~~~~~~i~iN~~~~~~~ 205 (224)
T cd01412 163 AKADLFLVIGTSGVVYPAAGLPEEAKERGARVIEINPEPTPLS 205 (224)
T ss_pred HcCCEEEEECcCccchhHHHHHHHHHHCCCeEEEECCCCCCCC
Confidence 47999999999885433222111 11233 888998887664
No 252
>PRK08760 replicative DNA helicase; Provisional
Probab=39.25 E-value=40 Score=34.02 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHhCCcEEe-cCCCCCc------------------cccCCcEEEEE
Q 038651 103 ATIAFVELADACGYAFAV-MPSAKGM------------------IVEFADAYIFV 138 (324)
Q Consensus 103 a~~~l~~lae~l~~Pv~t-t~~gkg~------------------~l~~aDlvl~l 138 (324)
....|.+||..+++||+. +...|++ +-++||+|+.+
T Consensus 367 Isr~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreSg~IeqdAD~vl~l 421 (476)
T PRK08760 367 ISRSLKGLAKELNVPVIALSQLNRSLETRTDKRPVMADLRESGAIEQDADMIVFI 421 (476)
T ss_pred HHHHHHHHHHHhCCEEEEeeccCccccccCCCCCCHHHHhhccchhcCCCEEEEE
Confidence 456888999999999996 4454544 55899999998
No 253
>TIGR00829 FRU PTS system, fructose-specific, IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Fru family is a large and complex family which includes several sequenced fructose and mannitol-specific permeases as well as several PTS components of unknown specificities. The fructose components of this family phosphorylate fructose on the 1-position. The Fru family PTS systems typically have 3 domains, IIA, IIB and IIC, which may be found as 1 or more proteins. The fructose and mannitol transporters form separate phylogenetic clusters in this family. This family is specific for the IIB domain of the fructose PTS transporters.
Probab=38.84 E-value=53 Score=24.90 Aligned_cols=40 Identities=23% Similarity=0.199 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHhCCcEEecCCC-CCc-------cccCCcEEEEEcCcc
Q 038651 103 ATIAFVELADACGYAFAVMPSA-KGM-------IVEFADAYIFVESIF 142 (324)
Q Consensus 103 a~~~l~~lae~l~~Pv~tt~~g-kg~-------~l~~aDlvl~lG~~~ 142 (324)
+.+.|++-++++|+.+.....| -|+ -+++||+||++|..-
T Consensus 16 Aae~L~~aA~~~G~~i~VE~qg~~g~~~~lt~~~i~~Ad~viia~d~~ 63 (85)
T TIGR00829 16 AAEALEKAAKKRGWEVKVETQGSVGAQNALTAEDIAAADGVILAADRE 63 (85)
T ss_pred HHHHHHHHHHHCCCeEEEEecCCcCccCCCCHHHHHhCCEEEEeccCC
Confidence 5688999999999999854443 444 678999999999764
No 254
>PRK08611 pyruvate oxidase; Provisional
Probab=38.74 E-value=88 Score=32.20 Aligned_cols=82 Identities=11% Similarity=0.014 Sum_probs=45.5
Q ss_pred EEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhh-hhC-------CCCC----CCCCCCHHHHHHHHHHHH
Q 038651 212 VIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVE-IHD-------GPYN----VIENWNYTGLVEAFQNAI 279 (324)
Q Consensus 212 vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~-~~~-------~~~~----~l~~~df~~lA~a~G~al 279 (324)
+++-.|.+...+. .-|.+|...++|++++.-.-..+...+. +|+ .+++ .+. +=..+.+.+.-|+
T Consensus 72 ~~~t~GPG~~N~l--~gla~A~~~~~Pvl~ItG~~~~~~~~~~~~q~~d~~~l~~~itk~~~~v~--~~~~~~~~l~~A~ 147 (576)
T PRK08611 72 CLSIGGPGAIHLL--NGLYDAKMDHVPVLALAGQVTSDLLGTDFFQEVNLEKMFEDVAVYNHQIM--SAENLPEIVNQAI 147 (576)
T ss_pred EEECCCCcHHHHH--HHHHHHhhcCCCEEEEecCCcccccCCCCccccCHHHHhhcccceeEEeC--CHHHHHHHHHHHH
Confidence 3444566554432 5699999999999999887665433221 110 0011 011 1112333333355
Q ss_pred HHhHHhCCCCeEEEEEEecC
Q 038651 280 ETAAVEKKDCLCFIEAIVHK 299 (324)
Q Consensus 280 ~~a~~~~~~~p~lIeV~id~ 299 (324)
+.|. ...||+.||+..|-
T Consensus 148 ~~A~--~~~GPV~l~iP~Dv 165 (576)
T PRK08611 148 RTAY--EKKGVAVLTIPDDL 165 (576)
T ss_pred HHHh--hCCCCEEEEeChhh
Confidence 5554 45699999999874
No 255
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=38.67 E-value=1.1e+02 Score=27.83 Aligned_cols=84 Identities=21% Similarity=0.158 Sum_probs=44.4
Q ss_pred cCCCeEEEecCchHHhhhH-HHHHHHHHHhCCCeEEEEEeCCchhhhhhhhCCCCCCC-CCCCHHHHHHHHHH-------
Q 038651 207 SGNTAVIAETGDSWFNCQK-DVDVSTMLRCEQKNIIFLINNGNYTIEVEIHDGPYNVI-ENWNYTGLVEAFQN------- 277 (324)
Q Consensus 207 ~~~~~vv~d~G~~~~~~~~-~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~~~~~~l-~~~df~~lA~a~G~------- 277 (324)
..+-.|.+..||+-..=.+ ..-+.||+.|+|.=.|.+++-+.... ++.-.++ +.-|..+-=||||.
T Consensus 139 ~~~~~VyvilGDGEl~EG~~WEAam~Aah~~L~NLiaivD~N~~Ql-----dG~t~~i~~~~pL~~k~eAFGw~V~evdG 213 (243)
T COG3959 139 GSPYRVYVILGDGELDEGQVWEAAMTAAHYKLDNLIAIVDRNKLQL-----DGETEEIMPKEPLADKWEAFGWEVIEVDG 213 (243)
T ss_pred CCCceEEEEecCcccccccHHHHHHHHHHhccCcEEEEEecCCccc-----CCchhhccCcchhHHHHHhcCceEEEEcC
Confidence 3444555666765331111 14478999999985555544333311 2222222 22356666667776
Q ss_pred --------HHHHhHHhC-CCCeEEEEEEe
Q 038651 278 --------AIETAAVEK-KDCLCFIEAIV 297 (324)
Q Consensus 278 --------al~~a~~~~-~~~p~lIeV~i 297 (324)
+|+++. . .++|.+|=+.+
T Consensus 214 ~d~~~i~~a~~~~~--~~~~rP~~IIa~T 240 (243)
T COG3959 214 HDIEEIVEALEKAK--GSKGRPTVIIAKT 240 (243)
T ss_pred cCHHHHHHHHHhhh--ccCCCCeEEEEec
Confidence 455553 3 34899885543
No 256
>PF02146 SIR2: Sir2 family; InterPro: IPR003000 These sequences represent the Sirtuin (Sir2-related) family of NAD+-dependent deacetylases. This family of enzymes is broadly conserved from bacteria to humans. In yeast, Sir2 proteins form complexes with other proteins to silence chromatin by accessing histones and deacetylating them. Sir2 proteins have been proposed to play a role in silencing, chromosome stability and ageing []. The bacterial enzyme CobB, an homologue of Sir2, is a phosphoribosyltransferase []. An in vitro ADP ribosyltransferase activity has also been associated with human members of this family []. Sir2-like enzymes employ NAD+ as a cosubstrate in deacetylation reactions [] and catalyse a reaction in which the cleavage of NAD(+)and histone and/or protein deacetylation are coupled to the formation of O-acetyl-ADP-ribose, a novel metabolite. The dependence of the reaction on both NAD(+) and the generation of this potential second messenger offers new clues to understanding the function and regulation of nuclear, cytoplasmic and mitochondrial Sir2-like enzymes []. Silent Information Regulator protein of Saccharomyces cerevisiae (Sir2) is one of several factors critical for silencing at least three loci. Among them, it is unique because it silences the rDNA as well as the mating type loci and telomeres []. Sir2 interacts in a complex with itself and with Sir3 and Sir4, two proteins that are able to interact with nucleosomes. In addition Sir2 also interacts with ubiquitination factors and/or complexes []. Homologues of Sir2 share a core domain including the GAG and NID motifs and a putative C4 Zinc finger. The regions containing these three conserved motifs are individually essential for Sir2 silencing function, as are the four cysteins []. In addition, the conserved residues HG next to the putative Zn finger have been shown to be essential for the ADP ribosyltransferase activity []. ; GO: 0008270 zinc ion binding, 0070403 NAD+ binding, 0006476 protein deacetylation; PDB: 1S5P_A 3PKI_E 3PKJ_F 3K35_A 1ICI_A 1M2K_A 1M2G_A 1M2N_B 1M2H_A 1M2J_A ....
Probab=38.45 E-value=14 Score=31.75 Aligned_cols=16 Identities=19% Similarity=0.200 Sum_probs=11.6
Q ss_pred cccCCcEEEEEcCccC
Q 038651 128 IVEFADAYIFVESIFN 143 (324)
Q Consensus 128 ~l~~aDlvl~lG~~~~ 143 (324)
.+++||++|+|||++.
T Consensus 160 ~~~~~Dl~lviGTSl~ 175 (178)
T PF02146_consen 160 DAEEADLLLVIGTSLQ 175 (178)
T ss_dssp HHHH-SEEEEESS-ST
T ss_pred HHHcCCEEEEEccCcE
Confidence 3468999999999984
No 257
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=38.25 E-value=61 Score=30.83 Aligned_cols=54 Identities=9% Similarity=0.024 Sum_probs=35.7
Q ss_pred CCCcEEEECCCCCccchHHHHHHHHHHhCCcEEec--CCC-CCc----------cccCCcEEEEEcCc
Q 038651 87 AVKPAMIGGPKLSVSKATIAFVELADACGYAFAVM--PSA-KGM----------IVEFADAYIFVESI 141 (324)
Q Consensus 87 AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt--~~g-kg~----------~l~~aDlvl~lG~~ 141 (324)
.+|++|+.|..+...+..+.+.+..+.. +.+..- ..+ +.. .-.++|+||.||..
T Consensus 22 ~~~~lvv~~~~~~~~g~~~~v~~~l~~~-~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~d~IiaiGGG 88 (332)
T cd08180 22 NKRVLIVTDPFMVKSGMLDKVTDHLDSS-IEVEIFSDVVPDPPIEVVAKGIKKFLDFKPDIVIALGGG 88 (332)
T ss_pred CCeEEEEeCchhhhCccHHHHHHHHHhc-CcEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 4899999998887666778888777765 554321 111 111 12479999999974
No 258
>PRK05595 replicative DNA helicase; Provisional
Probab=38.23 E-value=46 Score=33.16 Aligned_cols=36 Identities=17% Similarity=0.151 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhCCcEEe-cCCCCCc------------------cccCCcEEEEEc
Q 038651 104 TIAFVELADACGYAFAV-MPSAKGM------------------IVEFADAYIFVE 139 (324)
Q Consensus 104 ~~~l~~lae~l~~Pv~t-t~~gkg~------------------~l~~aDlvl~lG 139 (324)
...|..||..+++||+. +...++. +-++||+|+.+=
T Consensus 340 s~~LK~lAke~~i~vi~lsQLnR~~e~r~~~rP~lsdlr~Sg~Ieq~AD~vl~l~ 394 (444)
T PRK05595 340 SRSIKALAKEMECPVIALSQLSRAPEQRADHRPMLSDLRESGSIEQDADVVMFLY 394 (444)
T ss_pred HHHHHHHHHHhCCeEEEeeccCcchhccCCCCCchhhhhhhcccccCCCEEEEEe
Confidence 45689999999999986 4454543 567999999873
No 259
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=38.19 E-value=27 Score=31.72 Aligned_cols=37 Identities=16% Similarity=0.207 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhCCcEEec-CCCCCc------------------cccCCcEEEEEcC
Q 038651 104 TIAFVELADACGYAFAVM-PSAKGM------------------IVEFADAYIFVES 140 (324)
Q Consensus 104 ~~~l~~lae~l~~Pv~tt-~~gkg~------------------~l~~aDlvl~lG~ 140 (324)
..+|.+||..+++||+.. ...|+. +-+.||+|+.+--
T Consensus 159 ~~~Lk~lA~~~~i~vi~~sQlnr~~~~~~~~~p~l~dl~~sg~Ie~~AD~vl~l~r 214 (259)
T PF03796_consen 159 SRELKALAKELNIPVIALSQLNREAEDREDKRPSLSDLRESGAIEQDADVVLFLHR 214 (259)
T ss_dssp HHHHHHHHHHHTSEEEEEEEBSGGGGGSSSCS--HHHHCSTSSHHHH-SEEEEEEE
T ss_pred HHHHHHHHHHcCCeEEEccccChhhhcccccccchhhhhhhHHHHHHHhhhhhhcc
Confidence 457999999999999973 333332 5678999999863
No 260
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=38.13 E-value=22 Score=34.28 Aligned_cols=58 Identities=17% Similarity=0.128 Sum_probs=39.2
Q ss_pred hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecC--CCCCc---------cc--cCCcEEEEEcCc
Q 038651 84 LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMP--SAKGM---------IV--EFADAYIFVESI 141 (324)
Q Consensus 84 L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~--~gkg~---------~l--~~aDlvl~lG~~ 141 (324)
+++-+|++|+.|......+..+.+.+..++.++.+..-. .+.-- .+ .++|+||+||..
T Consensus 18 l~~~gr~lvVt~~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGGG 88 (366)
T PF00465_consen 18 LKRLGRVLVVTDPSLSKSGLVDRVLDALEEAGIEVQVFDGVGPNPTLEDVDEAAEQARKFGADCIIAIGGG 88 (366)
T ss_dssp HHCTTEEEEEEEHHHHHHTHHHHHHHHHHHTTCEEEEEEEESSS-BHHHHHHHHHHHHHTTSSEEEEEESH
T ss_pred HHhcCCEEEEECchHHhCccHHHHHHHHhhCceEEEEEecCCCCCcHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 344459999999855545577888888888898885432 11111 22 389999999964
No 261
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=38.12 E-value=61 Score=30.95 Aligned_cols=54 Identities=15% Similarity=0.126 Sum_probs=35.5
Q ss_pred CCCcEEEECCCCCccchHHHHHHHHHHhCCcEEe-cC-CC---CCc--------cc-----cCCcEEEEEcCc
Q 038651 87 AVKPAMIGGPKLSVSKATIAFVELADACGYAFAV-MP-SA---KGM--------IV-----EFADAYIFVESI 141 (324)
Q Consensus 87 AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~t-t~-~g---kg~--------~l-----~~aDlvl~lG~~ 141 (324)
.+|++|+.|.++.. ...+.+.+..++.|+.+.. .. .+ +.. .+ ..+|+||+||..
T Consensus 20 ~~~~livtd~~~~~-~~~~~v~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIavGGG 91 (344)
T TIGR01357 20 PSKLVIITDETVAD-LYADKLLEALQALGYNVLKLTVPDGEESKSLETVQRLYDQLLEAGLDRSSTIIALGGG 91 (344)
T ss_pred CCeEEEEECCchHH-HHHHHHHHHHHhcCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEEcCh
Confidence 47899999888764 3677888888888876531 22 12 222 12 235999999974
No 262
>COG1709 Predicted transcriptional regulator [Transcription]
Probab=38.12 E-value=64 Score=29.21 Aligned_cols=70 Identities=13% Similarity=0.093 Sum_probs=50.3
Q ss_pred HHHHHHhhhcC----ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhhhhcCCCcEEEECCCCCccchHHHHHHHHHHh
Q 038651 39 YAADGSARARA----VGAYVVTFIVGRLSIINAIAGAYSENFPAATITALLKAVKPAMIGGPKLSVSKATIAFVELADAC 114 (324)
Q Consensus 39 ~aAdgYaR~tg----~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l 114 (324)
.-++.|.|+-| ...+++-.--| ++||+.|-. .-=+|-.++=+|.....-.+...++||.=
T Consensus 156 ls~~ef~~LyG~~t~RalvFT~VstG--------------RSPMVAirV--~~lKP~aVVlHGi~~~~vD~lAikiAe~e 219 (241)
T COG1709 156 LSGLEFYRLYGWTTERALVFTKVSTG--------------RSPMVAIRV--SPLKPAAVVLHGIPPDNVDELAIKIAEIE 219 (241)
T ss_pred cchhhHHHHhcCCcceEEEEEeccCC--------------CCceEEEEc--cCCCccEEEEecCCccchhHHHHHHHhhc
Confidence 45778888754 46666544444 999998742 23467777767765555677788999999
Q ss_pred CCcEEecCCC
Q 038651 115 GYAFAVMPSA 124 (324)
Q Consensus 115 ~~Pv~tt~~g 124 (324)
++|.++|.+.
T Consensus 220 ~IpLvvT~~~ 229 (241)
T COG1709 220 RIPLVVTTMD 229 (241)
T ss_pred CCceEEecCC
Confidence 9999999775
No 263
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=38.02 E-value=48 Score=30.82 Aligned_cols=59 Identities=15% Similarity=0.133 Sum_probs=41.7
Q ss_pred hhcCCCcEEEEC-----------CCCCccchHHHHHHHHHHhCCcEEecCCCCCc---cccCCcEEEEEcCccCC
Q 038651 84 LLKAVKPAMIGG-----------PKLSVSKATIAFVELADACGYAFAVMPSAKGM---IVEFADAYIFVESIFND 144 (324)
Q Consensus 84 L~~AkrPvIl~G-----------~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~---~l~~aDlvl~lG~~~~~ 144 (324)
|+++.-+++..| .|. .....+.+++.++++|+|++|+...... +.+-+| ++-||++...
T Consensus 50 lk~~g~~~~r~~~~kpRTs~~s~~G~-g~~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~~~vd-~~kIga~~~~ 122 (266)
T PRK13398 50 LKELGVHMLRGGAFKPRTSPYSFQGL-GEEGLKILKEVGDKYNLPVVTEVMDTRDVEEVADYAD-MLQIGSRNMQ 122 (266)
T ss_pred HHHcCCCEEEEeeecCCCCCCccCCc-HHHHHHHHHHHHHHcCCCEEEeeCChhhHHHHHHhCC-EEEECccccc
Confidence 666666777776 111 1345678999999999999999987665 323356 7889988743
No 264
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=37.84 E-value=63 Score=31.32 Aligned_cols=54 Identities=11% Similarity=-0.063 Sum_probs=37.2
Q ss_pred CCCcEEEECCCCC-ccchHHHHHHHHHHhCCcEEecCCC-CC---c--------cc--cCCcEEEEEcCc
Q 038651 87 AVKPAMIGGPKLS-VSKATIAFVELADACGYAFAVMPSA-KG---M--------IV--EFADAYIFVESI 141 (324)
Q Consensus 87 AkrPvIl~G~g~~-~~~a~~~l~~lae~l~~Pv~tt~~g-kg---~--------~l--~~aDlvl~lG~~ 141 (324)
.+|++|+.|.+.. ..+..+.+.+..+..|+.+.. +.+ .. . .+ .++|+||+||..
T Consensus 23 ~~r~livt~~~~~~~~g~~~~v~~~L~~~g~~~~~-~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 91 (375)
T cd08179 23 GKKAFIVTGGGSMKKFGFLDKVEAYLKEAGIEVEV-FEGVEPDPSVETVLKGAEAMREFEPDWIIALGGG 91 (375)
T ss_pred CCeEEEEeCchHHHhCChHHHHHHHHHHcCCeEEE-eCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 4799999987654 356778888888888887652 222 11 1 22 488999999964
No 265
>PF13458 Peripla_BP_6: Periplasmic binding protein; PDB: 4EVS_A 4EY3_A 4EYG_B 4EYK_A 3H5L_B 3TD9_A 3EAF_A 1Z18_A 1Z17_A 2LIV_A ....
Probab=37.18 E-value=1e+02 Score=28.41 Aligned_cols=116 Identities=15% Similarity=-0.005 Sum_probs=68.8
Q ss_pred CeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh---------------------
Q 038651 26 SRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA--------------------- 83 (324)
Q Consensus 26 i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~--------------------- 83 (324)
|+++..=++....-+...+.++.. -+|.++..+.+...+....--+-..++|++.-+.
T Consensus 43 i~l~~~D~~~~~~~a~~~~~~l~~~~~v~~vvg~~~s~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~~~f~~~~~~~~~~ 122 (343)
T PF13458_consen 43 IELVVYDDGGDPAQAVQAARKLIDDDGVDAVVGPLSSAQAEAVAPIAEEAGIPYISPSASSPSPDSPNVFRLSPSDSQQA 122 (343)
T ss_dssp EEEEEEE-TT-HHHHHHHHHHHHHTSTESEEEESSSHHHHHHHHHHHHHHT-EEEESSGGGGTTTHTTEEESS--HHHHH
T ss_pred ceeeeccCCCChHHHHHHHHHhhhhcCcEEEEecCCcHHHHHHHHHHHhcCcEEEEeeccCCCCCCCcEEEEeccccHHH
Confidence 788877777778888888888743 4443332222333444444455557899887631
Q ss_pred ------hh---cCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEe-cCCCCCc----------cccCCcEEEEEcCc
Q 038651 84 ------LL---KAVKPAMIGGPKLSVSKATIAFVELADACGYAFAV-MPSAKGM----------IVEFADAYIFVESI 141 (324)
Q Consensus 84 ------L~---~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~t-t~~gkg~----------~l~~aDlvl~lG~~ 141 (324)
+. ..+|..|+...........+.+++.+++.|..++. ....-+. .-.++|.|++.+..
T Consensus 123 ~~~~~~~~~~~g~~~v~iv~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~~~~l~~~~~d~v~~~~~~ 200 (343)
T PF13458_consen 123 AALAEYLAKKLGAKKVAIVYPDDPYGRSLAEAFRKALEAAGGKVVGEIRYPPGDTDFSALVQQLKSAGPDVVVLAGDP 200 (343)
T ss_dssp HHHHHHHHHTTTTSEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEE-TTSSHHHHHHHHHHHTTTSEEEEESTH
T ss_pred HHHHHHHHHHcCCcEEEEEecCchhhhHHHHHHHHHHhhcCceeccceecccccccchHHHHHHhhcCCCEEEEeccc
Confidence 22 35677777766544445677889999999999752 2111111 11467887776644
No 266
>PRK05724 acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated
Probab=37.03 E-value=35 Score=32.66 Aligned_cols=95 Identities=15% Similarity=0.109 Sum_probs=52.6
Q ss_pred HHHHhhhcCceEEEEeCCc------------------chHHHHHHHHHHhhcCCcchhhhhhhcCCCcEEEECCCCCccc
Q 038651 41 ADGSARARAVGAYVVTFIV------------------GRLSIINAIAGAYSENFPAATITALLKAVKPAMIGGPKLSVSK 102 (324)
Q Consensus 41 AdgYaR~tg~gv~~~t~Gp------------------G~~N~~tgla~A~~d~~Pvl~It~L~~AkrPvIl~G~g~~~~~ 102 (324)
-.|++|+.|..|+++-.=+ |.-.++-.+--|-.-+.|||.+.= -|=...|.++-..+
T Consensus 99 V~G~ari~GrpV~VIa~d~g~~~~e~~~~~~G~~~peg~rKa~R~m~lA~~f~lPIVtlvD-----TpGa~~G~~aE~~G 173 (319)
T PRK05724 99 VGGLARLNGRPVMVIGHQKGRDTKEKIRRNFGMPRPEGYRKALRLMKMAEKFGLPIITFID-----TPGAYPGIGAEERG 173 (319)
T ss_pred EEEEEEECCEEEEEEEecCCccccccccccCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEe-----CCCCCCCHHHHhcc
Confidence 3488999884444333222 344455555666667777776521 01112233332222
Q ss_pred hHHHHHHHHH---HhCCcEEecCCCCCc-----cccCCcEEEEEcC
Q 038651 103 ATIAFVELAD---ACGYAFAVMPSAKGM-----IVEFADAYIFVES 140 (324)
Q Consensus 103 a~~~l~~lae---~l~~Pv~tt~~gkg~-----~l~~aDlvl~lG~ 140 (324)
....+.++.. .+.+|.++...|+|. .+.-+|.|+++=.
T Consensus 174 ~~~aia~~l~~~a~~~VP~IsVIiGeg~sGGAla~~~aD~v~m~~~ 219 (319)
T PRK05724 174 QSEAIARNLREMARLKVPIICTVIGEGGSGGALAIGVGDRVLMLEY 219 (319)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEeCCccHHHHHHHhccCeeeeecC
Confidence 3334444333 456999999988875 5556899887753
No 267
>COG3925 N-terminal domain of the phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=36.91 E-value=1.2e+02 Score=23.75 Aligned_cols=34 Identities=21% Similarity=0.159 Sum_probs=27.6
Q ss_pred hHHHHHHHHHHhCCcEEecCCCCCccccCCcEEEEEcCccC
Q 038651 103 ATIAFVELADACGYAFAVMPSAKGMIVEFADAYIFVESIFN 143 (324)
Q Consensus 103 a~~~l~~lae~l~~Pv~tt~~gkg~~l~~aDlvl~lG~~~~ 143 (324)
+..-+..-|.+-|.-++.|+ .+|||+|++|+.+.
T Consensus 19 ~~~vl~AAA~ka~l~ii~tp-------~dAeLviV~G~sip 52 (103)
T COG3925 19 AHTVLGAAAHKAGLEIIDTP-------NDAELVIVFGSSIP 52 (103)
T ss_pred HHHHHHHHHHHCCCeeeCCC-------CcccEEEEeccccC
Confidence 45667788888888888776 48999999999884
No 268
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=36.86 E-value=68 Score=30.92 Aligned_cols=52 Identities=13% Similarity=0.197 Sum_probs=33.6
Q ss_pred CCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc-----------cc--cCCcEEEEEcCc
Q 038651 87 AVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM-----------IV--EFADAYIFVESI 141 (324)
Q Consensus 87 AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~-----------~l--~~aDlvl~lG~~ 141 (324)
.+|++|+.|.+.. ..+.+.+..+..++.+..-...+.- .+ .++|+||+||..
T Consensus 23 ~~~~livtd~~~~---~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 87 (367)
T cd08182 23 GKRVLLVTGPRSA---IASGLTDILKPLGTLVVVFDDVQPNPDLEDLAAGIRLLREFGPDAVLAVGGG 87 (367)
T ss_pred CCeEEEEeCchHH---HHHHHHHHHHHcCCeEEEEcCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCCc
Confidence 5789999888775 4456777777777765432111111 22 378999999974
No 269
>PF02006 DUF137: Protein of unknown function DUF137; InterPro: IPR002855 The archaeal proteins in this family have no known function.
Probab=36.80 E-value=35 Score=29.55 Aligned_cols=43 Identities=26% Similarity=0.184 Sum_probs=34.3
Q ss_pred hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc
Q 038651 84 LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM 127 (324)
Q Consensus 84 L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~ 127 (324)
|.-||+|||=+-|-+. +=+.+++.+|++.+|+|+=..+.-+.-
T Consensus 1 LLlA~~PVISVNGN~A-AL~p~eiveLa~~~~A~iEVNLFyRT~ 43 (178)
T PF02006_consen 1 LLLAKHPVISVNGNTA-ALVPEEIVELAKATGAKIEVNLFYRTE 43 (178)
T ss_pred CCccCCCEEEEcccHH-HhChHHHHHHHHHhCCCEEEEcccCCH
Confidence 3468999998876654 346789999999999999888877654
No 270
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=36.72 E-value=66 Score=30.68 Aligned_cols=54 Identities=19% Similarity=0.065 Sum_probs=34.8
Q ss_pred cCCCcEEEECCCCCccchHHHHHHHHHHhC-CcEEecCCCCCc--------cc--cCCcEEEEEcCc
Q 038651 86 KAVKPAMIGGPKLSVSKATIAFVELADACG-YAFAVMPSAKGM--------IV--EFADAYIFVESI 141 (324)
Q Consensus 86 ~AkrPvIl~G~g~~~~~a~~~l~~lae~l~-~Pv~tt~~gkg~--------~l--~~aDlvl~lG~~ 141 (324)
.++|++|+.|..+.. ...+.+.+..++.+ ..++....+ .. .+ .++|+||+||..
T Consensus 24 ~~~~~liv~d~~~~~-~~~~~v~~~l~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~d~iIaiGGG 88 (339)
T cd08173 24 LGGRVLVVTGPTTKS-IAGKKVEALLEDEGEVDVVIVEDA-TYEEVEKVESSARDIGADFVIGVGGG 88 (339)
T ss_pred CCCeEEEEECCchHH-HHHHHHHHHHHhcCCeEEEEeCCC-CHHHHHHHHHHhhhcCCCEEEEeCCc
Confidence 357899999888765 67777777777665 222322222 11 22 378999999974
No 271
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=36.17 E-value=45 Score=35.41 Aligned_cols=95 Identities=13% Similarity=0.102 Sum_probs=53.7
Q ss_pred HHHHhhhcCceEEEEeCCc------------------chHHHHHHHHHHhhcCCcchhhhhhhcCCCcEEEECCCCCccc
Q 038651 41 ADGSARARAVGAYVVTFIV------------------GRLSIINAIAGAYSENFPAATITALLKAVKPAMIGGPKLSVSK 102 (324)
Q Consensus 41 AdgYaR~tg~gv~~~t~Gp------------------G~~N~~tgla~A~~d~~Pvl~It~L~~AkrPvIl~G~g~~~~~ 102 (324)
-.|++|+.|..|+++..=+ |.--++-.+--|-.-+.|||.+.= -|=...|.++-..+
T Consensus 190 VtGlGRIdGrpV~VIAndkg~~tke~~~rnfG~~~peGyRKAlRlmkLAekfgLPIVtLVD-----TpGA~pG~~AEe~G 264 (762)
T PLN03229 190 VTGIGTIDGKRYMFIGHQKGRNTKENIMRNFGMPTPHGYRKALRMMYYADHHGFPIVTFID-----TPGAYADLKSEELG 264 (762)
T ss_pred EEEEEEECCEEEEEEEecCCccccccccccCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEE-----CCCcCCCchhHHHh
Confidence 3488999984333332222 244455556666677777776520 01112233332222
Q ss_pred hHHHHHHHHH---HhCCcEEecCCCCCc-----cccCCcEEEEEcC
Q 038651 103 ATIAFVELAD---ACGYAFAVMPSAKGM-----IVEFADAYIFVES 140 (324)
Q Consensus 103 a~~~l~~lae---~l~~Pv~tt~~gkg~-----~l~~aDlvl~lG~ 140 (324)
....+.+.+. .+.+|+++...|.|. ++.-+|.|+++-.
T Consensus 265 q~~aIArnl~amasl~VP~ISVViGeggSGGAlA~g~aD~VlMle~ 310 (762)
T PLN03229 265 QGEAIAHNLRTMFGLKVPIVSIVIGEGGSGGALAIGCANKLLMLEN 310 (762)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhcCCEEEEecC
Confidence 3344444343 456999999988875 5566899988764
No 272
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=35.56 E-value=68 Score=31.19 Aligned_cols=54 Identities=11% Similarity=-0.043 Sum_probs=35.7
Q ss_pred CCCcEEEECCCCC-ccchHHHHHHHHHHhCCcEEecCCCCC----c----------cccCCcEEEEEcCc
Q 038651 87 AVKPAMIGGPKLS-VSKATIAFVELADACGYAFAVMPSAKG----M----------IVEFADAYIFVESI 141 (324)
Q Consensus 87 AkrPvIl~G~g~~-~~~a~~~l~~lae~l~~Pv~tt~~gkg----~----------~l~~aDlvl~lG~~ 141 (324)
.||++|+.|.... ..+..+.+.+..+..|+-+.. +.+-. . .-.++|+||.||..
T Consensus 28 ~~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~-~~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGG 96 (382)
T cd08187 28 GKKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVE-LGGVEPNPRLETVREGIELCKEEKVDFILAVGGG 96 (382)
T ss_pred CCEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEE-ECCccCCCCHHHHHHHHHHHHHcCCCEEEEeCCh
Confidence 4899999886544 345667788888887776542 22111 1 22579999999973
No 273
>PRK08006 replicative DNA helicase; Provisional
Probab=35.23 E-value=50 Score=33.32 Aligned_cols=36 Identities=17% Similarity=0.194 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhCCcEEe-cCCCCCc------------------cccCCcEEEEEc
Q 038651 104 TIAFVELADACGYAFAV-MPSAKGM------------------IVEFADAYIFVE 139 (324)
Q Consensus 104 ~~~l~~lae~l~~Pv~t-t~~gkg~------------------~l~~aDlvl~lG 139 (324)
...|.+||..+++||+. +...|++ +=++||+|+.+=
T Consensus 365 sr~LK~lAkel~ipVi~LsQLnR~~e~r~dkrP~lsDLreSG~IEqdAD~v~~l~ 419 (471)
T PRK08006 365 SRSLKALAKELQVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIY 419 (471)
T ss_pred HHHHHHHHHHhCCeEEEEEecCccccccCCCCCchhhhhhcCcccccCCEEEEEe
Confidence 45889999999999996 5555554 557999999885
No 274
>PRK07004 replicative DNA helicase; Provisional
Probab=35.17 E-value=45 Score=33.48 Aligned_cols=36 Identities=19% Similarity=0.269 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhCCcEEe-cCCCCCc------------------cccCCcEEEEEc
Q 038651 104 TIAFVELADACGYAFAV-MPSAKGM------------------IVEFADAYIFVE 139 (324)
Q Consensus 104 ~~~l~~lae~l~~Pv~t-t~~gkg~------------------~l~~aDlvl~lG 139 (324)
...|..||..+++||+. +...|++ +=++||.|+.+=
T Consensus 353 sr~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreSg~IeqdAD~v~~l~ 407 (460)
T PRK07004 353 SRSLKSLAKELDVPVIALSQLNRGLEQRPNKRPVMSDLRESGAIEQDADVILFIY 407 (460)
T ss_pred HHHHHHHHHHhCCeEEEEeccChhhhccCCCCCChHHHhcchhhhhcCCEEEEec
Confidence 56789999999999995 4444443 558999999985
No 275
>PRK08840 replicative DNA helicase; Provisional
Probab=34.72 E-value=52 Score=33.11 Aligned_cols=38 Identities=16% Similarity=0.142 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhCCcEEe-cCCCCCc------------------cccCCcEEEEEcCcc
Q 038651 104 TIAFVELADACGYAFAV-MPSAKGM------------------IVEFADAYIFVESIF 142 (324)
Q Consensus 104 ~~~l~~lae~l~~Pv~t-t~~gkg~------------------~l~~aDlvl~lG~~~ 142 (324)
...|.+||..+++||+. +...|++ +=++||+|+.+ .|-
T Consensus 358 sr~LK~lAkel~ipVi~LsQLnR~~e~r~~krP~lsDLreSG~IEqdAD~v~~l-~R~ 414 (464)
T PRK08840 358 SRSLKALAKELNVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFI-YRD 414 (464)
T ss_pred HHHHHHHHHHhCCeEEEEEecCccccccCCCCCchHhhhhcccccccCCEEEEE-ecc
Confidence 45889999999999986 5555554 55899999998 443
No 276
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=34.71 E-value=75 Score=26.43 Aligned_cols=23 Identities=17% Similarity=0.039 Sum_probs=18.7
Q ss_pred CccchHHHHHHHHHHhCCcEEec
Q 038651 99 SVSKATIAFVELADACGYAFAVM 121 (324)
Q Consensus 99 ~~~~a~~~l~~lae~l~~Pv~tt 121 (324)
..++-++++.+-++..++||.-+
T Consensus 6 IHtdWRe~I~~ga~~~~L~v~F~ 28 (141)
T PF11071_consen 6 IHTDWREEIKEGAKAAGLPVEFT 28 (141)
T ss_pred ccchHHHHHHHHHHHcCCCeEEe
Confidence 34567899999999999998644
No 277
>PRK05636 replicative DNA helicase; Provisional
Probab=34.58 E-value=52 Score=33.55 Aligned_cols=36 Identities=14% Similarity=0.116 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhCCcEEe-cCCCCCc------------------cccCCcEEEEEc
Q 038651 104 TIAFVELADACGYAFAV-MPSAKGM------------------IVEFADAYIFVE 139 (324)
Q Consensus 104 ~~~l~~lae~l~~Pv~t-t~~gkg~------------------~l~~aDlvl~lG 139 (324)
...|..||..+++||+. +.+.|++ +=++||+|+.+=
T Consensus 404 sr~LK~lAkel~ipVi~lsQLnR~~e~r~dkrP~lsDLreSG~IEqdAD~vl~l~ 458 (505)
T PRK05636 404 SRQLKLLAKELDVPLIAISQLNRGPESRTDKRPQLADLRESGSLEQDADMVMLLY 458 (505)
T ss_pred HHHHHHHHHHhCCeEEEEeecCccccccCCCCCcHHHHhhcccccccCCEEEEEe
Confidence 45688999999999986 5555544 557999999883
No 278
>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=34.43 E-value=2.5e+02 Score=25.62 Aligned_cols=57 Identities=16% Similarity=-0.050 Sum_probs=40.0
Q ss_pred CCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHH-HhhcCCcchhhh
Q 038651 25 GSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAG-AYSENFPAATIT 82 (324)
Q Consensus 25 ~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~-A~~d~~Pvl~It 82 (324)
.|+++..-++....-+...+.++-. -+|..+ .||..+.....++. +...++|+|..+
T Consensus 40 ~l~~~~~D~~~~~~~~~~~~~~li~~~~v~ai-iG~~~s~~~~~v~~~~~~~~ip~i~~~ 98 (334)
T cd06347 40 KIELVVEDNKSDKEEAANAATRLIDQDKVVAI-IGPVTSGATLAAGPIAEDAKVPMITPS 98 (334)
T ss_pred eEEEEEecCCCChHHHHHHHHHHhcccCeEEE-EcCCccHhHHHhHHHHHHCCCeEEcCC
Confidence 3788888888788888888888743 466554 47766555555544 446799999864
No 279
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=34.31 E-value=97 Score=33.32 Aligned_cols=77 Identities=10% Similarity=-0.020 Sum_probs=50.3
Q ss_pred EEEEeCCcchHHHHHHHHHHhhcCCcchhhhhhhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc----
Q 038651 52 AYVVTFIVGRLSIINAIAGAYSENFPAATITALLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM---- 127 (324)
Q Consensus 52 v~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~---- 127 (324)
+++..+|.|=|-++.-|+.-+. ..+-++-|.++.....+.++.+++..+++.+|+|+..-...+.+
T Consensus 189 ~lVGpnGvGKTTTiaKLA~~~~----------~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al 258 (767)
T PRK14723 189 ALVGPTGVGKTTTTAKLAARCV----------AREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFAL 258 (767)
T ss_pred EEECCCCCcHHHHHHHHHhhHH----------HHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHH
Confidence 3456788888888877777542 12223345555555566778999999999999999754433322
Q ss_pred -cccCCcEEEEE
Q 038651 128 -IVEFADAYIFV 138 (324)
Q Consensus 128 -~l~~aDlvl~l 138 (324)
.+++.|+||+=
T Consensus 259 ~~~~~~D~VLID 270 (767)
T PRK14723 259 AALGDKHLVLID 270 (767)
T ss_pred HHhcCCCEEEEe
Confidence 44566766553
No 280
>PRK06321 replicative DNA helicase; Provisional
Probab=34.29 E-value=52 Score=33.23 Aligned_cols=36 Identities=14% Similarity=0.149 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhCCcEEe-cCCCCCc------------------cccCCcEEEEEc
Q 038651 104 TIAFVELADACGYAFAV-MPSAKGM------------------IVEFADAYIFVE 139 (324)
Q Consensus 104 ~~~l~~lae~l~~Pv~t-t~~gkg~------------------~l~~aDlvl~lG 139 (324)
...|..||..+++||+. +.+-|++ +=++||+|+.+=
T Consensus 368 sr~LK~lAkel~vpVi~lsQLnR~~e~r~~krP~lsDLReSG~IEqdAD~v~~l~ 422 (472)
T PRK06321 368 SRMLKNLARELNIPILCLSQLSRKVEDRANHRPMMSDLRESGSIEQDSDLVMFLL 422 (472)
T ss_pred HHHHHHHHHHhCCcEEEEeecChhhhccCCCCCCHHHHhhcccccccCCEEEEEe
Confidence 45688999999999994 5555544 557999999883
No 281
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=34.28 E-value=69 Score=34.84 Aligned_cols=58 Identities=9% Similarity=0.043 Sum_probs=39.8
Q ss_pred hhcCCCcEEEECCCCCccchHHHHHHHHH--HhCCcEEecCCCCC---c--------c--ccCCcEEEEEcCc
Q 038651 84 LLKAVKPAMIGGPKLSVSKATIAFVELAD--ACGYAFAVMPSAKG---M--------I--VEFADAYIFVESI 141 (324)
Q Consensus 84 L~~AkrPvIl~G~g~~~~~a~~~l~~lae--~l~~Pv~tt~~gkg---~--------~--l~~aDlvl~lG~~ 141 (324)
+...+|++|+.|.++...+..+.+.+..+ ..++.+..-...+. . . -.++|+||+||..
T Consensus 477 l~~~~~~lvVtd~~~~~~g~~~~v~~~L~~~~~~i~~~~~~~v~~np~~~~v~~~~~~~~~~~~D~IIaiGGG 549 (862)
T PRK13805 477 LDGKKRAFIVTDRFMVELGYVDKVTDVLKKRENGVEYEVFSEVEPDPTLSTVRKGAELMRSFKPDTIIALGGG 549 (862)
T ss_pred hcCCCEEEEEECcchhhcchHHHHHHHHhcccCCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 44679999999988876667778887777 66776543221111 1 2 2589999999974
No 282
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=34.06 E-value=2e+02 Score=24.04 Aligned_cols=35 Identities=11% Similarity=0.002 Sum_probs=25.4
Q ss_pred CCcEEEECCCCCccchHHHHHHHHHHhCCcEEecC
Q 038651 88 VKPAMIGGPKLSVSKATIAFVELADACGYAFAVMP 122 (324)
Q Consensus 88 krPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~ 122 (324)
.+.++++.....+....+++..++++.++|+....
T Consensus 28 g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~ 62 (173)
T cd03115 28 GKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEG 62 (173)
T ss_pred CCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecC
Confidence 34455555555666777889999999999988653
No 283
>cd06328 PBP1_SBP_like_2 Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Periplasmic solute-binding domain of active transport proteins found in gram-negative and gram-positive bacteria. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=33.84 E-value=3.2e+02 Score=25.44 Aligned_cols=55 Identities=9% Similarity=-0.117 Sum_probs=35.9
Q ss_pred CCeEeecCchHHHHHHHHHHhhhcC-ceEEEEe--CCcchHHHHHHHHHHhhcCCcchhh
Q 038651 25 GSRDVGCCNELNAGYAADGSARARA-VGAYVVT--FIVGRLSIINAIAGAYSENFPAATI 81 (324)
Q Consensus 25 ~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t--~GpG~~N~~tgla~A~~d~~Pvl~I 81 (324)
.|+++..=++....-++..+.|+-. -+|..+. .+.+.+.++..+ +-..++|+|..
T Consensus 41 ~i~lv~~D~~~~p~~a~~~~~~li~~~~V~avvG~~~S~~~~a~~~~--~~~~~ip~i~~ 98 (333)
T cd06328 41 PIEVIVKDDAGNPEVAVSLARELIGDDGVDILVGSTSSGVALAVLPV--AEENKKILIVE 98 (333)
T ss_pred EEEEEEecCCCChHHHHHHHHHHHHhcCCeEEEccCCcHHHHHHHHH--HHHhCCcEEec
Confidence 3899999999999999999999743 3444433 333433333333 33458898864
No 284
>PRK06749 replicative DNA helicase; Provisional
Probab=33.81 E-value=56 Score=32.49 Aligned_cols=38 Identities=13% Similarity=0.061 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhCCcEEe-cCCCCCc------------------cccCCcEEEEEcCcc
Q 038651 104 TIAFVELADACGYAFAV-MPSAKGM------------------IVEFADAYIFVESIF 142 (324)
Q Consensus 104 ~~~l~~lae~l~~Pv~t-t~~gkg~------------------~l~~aDlvl~lG~~~ 142 (324)
...|..||..+++||+. +...+++ +=++||+|+.+ .|-
T Consensus 329 sr~LK~lAkel~vpVi~lsQLnR~~e~r~~krP~lsDLR~SG~IEqdAD~vl~l-~R~ 385 (428)
T PRK06749 329 SRKLKLLARELNVCVVALSQLSRSVESRQDKRPLLSDLRETGQIEQDADVIMLM-YRE 385 (428)
T ss_pred HHHHHHHHHHhCCeEEEEEecCccccccCCCCCchHhhhhcccccccCCEEEEE-eec
Confidence 45688999999999996 4555554 55789999998 443
No 285
>PLN02470 acetolactate synthase
Probab=33.74 E-value=1.2e+02 Score=31.36 Aligned_cols=84 Identities=11% Similarity=0.052 Sum_probs=45.4
Q ss_pred EEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhh-hhCC----CCCCCCC-----CCHHHHHHHHHHHHHH
Q 038651 212 VIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVE-IHDG----PYNVIEN-----WNYTGLVEAFQNAIET 281 (324)
Q Consensus 212 vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~-~~~~----~~~~l~~-----~df~~lA~a~G~al~~ 281 (324)
+++-.|-+...+ +.-+.+|...+.|+++|.-.-..+.+.+. +|+- -+..+.. .+-..+.+.+--|++.
T Consensus 80 ~~~t~GPG~~N~--l~gia~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~i~~~l~~A~~~ 157 (585)
T PLN02470 80 CIATSGPGATNL--VTGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVMDVEDIPRVIREAFFL 157 (585)
T ss_pred EEECCCccHHHH--HHHHHHHHhcCCcEEEEecCCChhhcCCCcCcccchhhhhhhheEEEEEcCCHHHHHHHHHHHHHH
Confidence 334455555433 35699999999999999876554432221 1110 0000000 1223333333335555
Q ss_pred hHHhCCCCeEEEEEEec
Q 038651 282 AAVEKKDCLCFIEAIVH 298 (324)
Q Consensus 282 a~~~~~~~p~lIeV~id 298 (324)
|. ....||+.|||..|
T Consensus 158 A~-s~~~GPV~l~iP~D 173 (585)
T PLN02470 158 AS-SGRPGPVLVDIPKD 173 (585)
T ss_pred hc-CCCCCeEEEEecCc
Confidence 53 34569999999987
No 286
>PRK06904 replicative DNA helicase; Validated
Probab=33.70 E-value=54 Score=33.08 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhCCcEEe-cCCCCCc------------------cccCCcEEEEE
Q 038651 104 TIAFVELADACGYAFAV-MPSAKGM------------------IVEFADAYIFV 138 (324)
Q Consensus 104 ~~~l~~lae~l~~Pv~t-t~~gkg~------------------~l~~aDlvl~l 138 (324)
...|..||..+++||+. +...|++ +=++||+|+.+
T Consensus 363 sr~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreSG~IEqdAD~v~~l 416 (472)
T PRK06904 363 SRSLKALAKELKVPVVALSQLNRTLENRGDKRPVNSDLRESGSIEQDADLIMFI 416 (472)
T ss_pred HHHHHHHHHHhCCeEEEEEecCchhhccCCCCCchHHHhhcCccccCCcEEEEE
Confidence 45788899999999986 5555554 55899999988
No 287
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=33.24 E-value=1.5e+02 Score=30.75 Aligned_cols=76 Identities=4% Similarity=-0.025 Sum_probs=43.2
Q ss_pred ecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhhCCCCCCCCCCCHHHHHHHHHH-------------HHHH
Q 038651 215 ETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIHDGPYNVIENWNYTGLVEAFQN-------------AIET 281 (324)
Q Consensus 215 d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~~~~~~l~~~df~~lA~a~G~-------------al~~ 281 (324)
-.|-+...+ +.-|.+|.+.+.|+++|.-.-.....-+ ..+...|...+.+.+-. .+++
T Consensus 74 t~GpG~~N~--~~gla~A~~~~~Pvl~I~G~~~~~~~~~-------~~~q~~D~~~~~~~vtk~~~~v~~~~~i~~~i~~ 144 (588)
T TIGR01504 74 TSGPAGTDM--ITGLYSASADSIPILCITGQAPRARLHK-------EDFQAVDIAAIAKPVSKMAVTVREAALVPRVLQQ 144 (588)
T ss_pred CCCccHHHH--HHHHHHHhhcCCCEEEEecCCCccccCC-------CcccccCHHHHhhhhceEEEEcCCHHHHHHHHHH
Confidence 345443332 3669999999999999986554332111 11222344444443332 3444
Q ss_pred hHH---hCCCCeEEEEEEecC
Q 038651 282 AAV---EKKDCLCFIEAIVHK 299 (324)
Q Consensus 282 a~~---~~~~~p~lIeV~id~ 299 (324)
|+. ....||+.|||..|-
T Consensus 145 A~~~A~~~~~GPV~l~iP~Dv 165 (588)
T TIGR01504 145 AFHLMRSGRPGPVLIDLPFDV 165 (588)
T ss_pred HHHHHccCCCCeEEEEeCcch
Confidence 421 245589999999874
No 288
>PRK12342 hypothetical protein; Provisional
Probab=33.18 E-value=2.4e+02 Score=25.97 Aligned_cols=99 Identities=15% Similarity=-0.093 Sum_probs=63.1
Q ss_pred CCCeEeecCchHHHHHHHHHHhhhcCceEEEEeCCcchHHHHHHHHHHhhcCC-cchhhh------------------hh
Q 038651 24 PGSRDVGCCNELNAGYAADGSARARAVGAYVVTFIVGRLSIINAIAGAYSENF-PAATIT------------------AL 84 (324)
Q Consensus 24 ~~i~~i~~rhE~~A~~aAdgYaR~tg~gv~~~t~GpG~~N~~tgla~A~~d~~-Pvl~It------------------~L 84 (324)
.+.+++..-.+..|.=+|---.+ .|--|.++|.||-......-+-+|..=+. -.++|+ .|
T Consensus 27 ~~~~~~iNp~D~~AlE~AlrLk~-~g~~Vtvls~Gp~~a~~~~l~r~alamGaD~avli~d~~~~g~D~~ata~~La~~i 105 (254)
T PRK12342 27 DNAEAKISQFDLNAIEAASQLAT-DGDEIAALTVGGSLLQNSKVRKDVLSRGPHSLYLVQDAQLEHALPLDTAKALAAAI 105 (254)
T ss_pred CCCCccCChhhHHHHHHHHHHhh-cCCEEEEEEeCCChHhHHHHHHHHHHcCCCEEEEEecCccCCCCHHHHHHHHHHHH
Confidence 47888889999988888876663 45456667889864222211122222111 112221 14
Q ss_pred hcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCC
Q 038651 85 LKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPS 123 (324)
Q Consensus 85 ~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~ 123 (324)
++-.-=+|++|......+...-=-.+||.||+|.+|...
T Consensus 106 ~~~~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~ 144 (254)
T PRK12342 106 EKIGFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVS 144 (254)
T ss_pred HHhCCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEE
Confidence 444577899998887766666678899999999998754
No 289
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=33.00 E-value=2.7e+02 Score=26.06 Aligned_cols=56 Identities=4% Similarity=-0.084 Sum_probs=31.8
Q ss_pred CeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhh
Q 038651 26 SRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATI 81 (324)
Q Consensus 26 i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~I 81 (324)
|+++..-.+....-++..+.++-. -+|..+..+.+...+......+-..++|+|..
T Consensus 48 i~l~~~D~~~~~~~a~~~a~~li~~~~v~avvG~~~s~~~~~~~~~~~~~~ip~i~~ 104 (362)
T cd06343 48 IELIVEDDGYSPPKTVEQTRKLVESDEVFAMVGGLGTPTNLAVQKYLNEKKVPQLFP 104 (362)
T ss_pred EEEEEecCCCChHHHHHHHHHHHhhcCeEEEEecCCcHHHHHhHHHHHhcCCceEec
Confidence 777777666666667777777643 34443332222223333344445678998875
No 290
>PRK05333 NAD-dependent deacetylase; Provisional
Probab=32.95 E-value=20 Score=33.51 Aligned_cols=42 Identities=19% Similarity=0.177 Sum_probs=27.5
Q ss_pred cccCCcEEEEEcCccCCccccccc-cc-CCC-CEEEEcCCccccc
Q 038651 128 IVEFADAYIFVESIFNDYSSVGYS-LL-LNK-KAILMQPDRIVVA 169 (324)
Q Consensus 128 ~l~~aDlvl~lG~~~~~~~t~~~~-~~-~~~-~iI~id~d~~~i~ 169 (324)
.++++|++|+|||++.-.....+. .. ..+ ++|-|+.++....
T Consensus 211 ~~~~~DlllvvGTSl~V~p~~~~~~~a~~~g~~~i~IN~~~t~~~ 255 (285)
T PRK05333 211 ALDAADAVLVVGSSLMVYSGYRFCVWAAQQGKPIAALNLGRTRAD 255 (285)
T ss_pred HHhcCCEEEEECcCceecchhhhHHHHHHCCCeEEEECCCCCCCC
Confidence 567899999999999654332221 11 123 3888988877665
No 291
>PF04227 Indigoidine_A: Indigoidine synthase A like protein; InterPro: IPR007342 Members of this entry catalyze the hydrolysis of pseudouridine 5'-phosphate (PsiMP) to ribose 5-phosphate and uracil. It is also reported to be involved in the synthesis of indigoidine, which is a blue pigment synthesised by Erwinia chrysanthemi implicated in pathogenicity and protection from oxidative stress. IdgA is involved in indigoidine biosynthesis, but its specific function is unknown [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds; PDB: 1VKM_C.
Probab=32.80 E-value=21 Score=33.64 Aligned_cols=79 Identities=9% Similarity=-0.005 Sum_probs=50.5
Q ss_pred HHhhhc-C-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh------------------hhcCCCcEEEECCCCCccc
Q 038651 43 GSARAR-A-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA------------------LLKAVKPAMIGGPKLSVSK 102 (324)
Q Consensus 43 gYaR~t-g-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~------------------L~~AkrPvIl~G~g~~~~~ 102 (324)
+..|++ + ++.++..-..|+|-.-.-+.-|...++||.+--+ ..=++.|+.++-.|+..-=
T Consensus 76 ~~~K~s~RDl~~~~a~~~~GaTTVsaTm~lA~~aGI~VfaTGGiGGVHrga~~t~DiSaDL~eL~rtpv~VV~aG~KsIL 155 (293)
T PF04227_consen 76 GVIKVSRRDLAYALAKGLSGATTVSATMILAHLAGIKVFATGGIGGVHRGAEETFDISADLTELARTPVAVVCAGAKSIL 155 (293)
T ss_dssp --EEE-GGGHHHHHHHT--EEE-HHHHHHHHHHTT--EEE-S-B--B-TT---SS-B-HHHHHHTTS-EEEEESBB-TTS
T ss_pred CCeeecHhhHHHHHhCCCccHhHHHHHHHHHHHcCCCEEEeCCcccCCCCCcCcchhhhHHHHHhcCCceEEEccCcchh
Confidence 566665 3 6777777777887777778888899999988532 2347899999999997655
Q ss_pred hHHHHHHHHHHhCCcEEec
Q 038651 103 ATIAFVELADACGYAFAVM 121 (324)
Q Consensus 103 a~~~l~~lae~l~~Pv~tt 121 (324)
....-.|+.|..|+||++-
T Consensus 156 Di~~TLE~LET~GV~Vvgy 174 (293)
T PF04227_consen 156 DIPKTLEYLETQGVPVVGY 174 (293)
T ss_dssp -HHHHHHHHHHTT--EEEE
T ss_pred chHHHHHHhhcCCeEEEEe
Confidence 6678889999999999976
No 292
>PF06711 DUF1198: Protein of unknown function (DUF1198); InterPro: IPR009587 This family consists of several bacterial proteins of around 150 residues in length which are specific to Escherichia coli, Salmonella species and Yersinia pestis. The function of this family is unknown.
Probab=32.80 E-value=32 Score=28.82 Aligned_cols=36 Identities=17% Similarity=0.080 Sum_probs=30.2
Q ss_pred EEEECCCCCccchHHHHHHHHHHhCCcEEe-----cCCCCC
Q 038651 91 AMIGGPKLSVSKATIAFVELADACGYAFAV-----MPSAKG 126 (324)
Q Consensus 91 vIl~G~g~~~~~a~~~l~~lae~l~~Pv~t-----t~~gkg 126 (324)
|.++|..+..++...++++|+++|+|+.+. ..|||-
T Consensus 12 VFivGfRvLtSdtR~A~~~Ls~rL~I~Pv~iESMl~qMGk~ 52 (148)
T PF06711_consen 12 VFIVGFRVLTSDTRRAIRRLSERLNIKPVYIESMLDQMGKR 52 (148)
T ss_pred hheeeEEecccchHHHHHHHHHHhCCCceeHHHHHHHHhHh
Confidence 678999999999999999999999998764 346664
No 293
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=32.77 E-value=60 Score=31.95 Aligned_cols=36 Identities=17% Similarity=0.201 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhCCcEEec-CCCCCc------------------cccCCcEEEEEc
Q 038651 104 TIAFVELADACGYAFAVM-PSAKGM------------------IVEFADAYIFVE 139 (324)
Q Consensus 104 ~~~l~~lae~l~~Pv~tt-~~gkg~------------------~l~~aDlvl~lG 139 (324)
...|.+||..+++||+.. ...|+. +-++||+|+.+-
T Consensus 333 ~~~Lk~lAke~~i~Vi~lsQlnr~~~~r~~krp~lsdlr~Sg~Ieq~AD~v~~l~ 387 (421)
T TIGR03600 333 SRGLKALAKELDVPVVLLAQLNRGSEKRTDKRPIMSDLRDSGAIEQDADVIGLIH 387 (421)
T ss_pred HHHHHHHHHHhCCcEEEecccCcchhhcCCCCCChHHHhhcCCccccCcEEEEec
Confidence 357889999999999964 333433 668999999986
No 294
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=32.71 E-value=1.5e+02 Score=30.55 Aligned_cols=83 Identities=12% Similarity=0.046 Sum_probs=44.5
Q ss_pred EEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhh-hCCCCCCCCC-CCHHHHHHHHHH-------------
Q 038651 213 IAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEI-HDGPYNVIEN-WNYTGLVEAFQN------------- 277 (324)
Q Consensus 213 v~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~-~~~~~~~l~~-~df~~lA~a~G~------------- 277 (324)
++-.|.+...+ +.-|.+|.+.+.|+++|.-.-......+.. ++.....+.. .|-..+.+.+-.
T Consensus 80 ~~t~GPG~~N~--~~gla~A~~d~~Pvl~I~G~~~~~~~~~~~~~~~~~~~~qe~~d~~~~~~~vtk~~~~v~~~~~~~~ 157 (569)
T PRK08327 80 MVHVDVGTANA--LGGVHNAARSRIPVLVFAGRSPYTEEGELGSRNTRIHWTQEMRDQGGLVREYVKWDYEIRRGDQIGE 157 (569)
T ss_pred EEecCHHHHHH--HHHHHHHhhcCCCEEEEeccCCccccccccccccCcccchhhhhHHHHHhhhhhhhcccCCHHHHHH
Confidence 33356554433 366999999999999998764322111100 0000111222 244444443322
Q ss_pred ----HHHHhHHhCCCCeEEEEEEec
Q 038651 278 ----AIETAAVEKKDCLCFIEAIVH 298 (324)
Q Consensus 278 ----al~~a~~~~~~~p~lIeV~id 298 (324)
|++.|. ...+||+.|||..|
T Consensus 158 ~l~~A~~~a~-~~~~GPV~i~iP~D 181 (569)
T PRK08327 158 VVARAIQIAM-SEPKGPVYLTLPRE 181 (569)
T ss_pred HHHHHHHHHh-cCCCCCEEEECcHH
Confidence 455443 23578999999976
No 295
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=32.53 E-value=2.6e+02 Score=25.68 Aligned_cols=55 Identities=7% Similarity=-0.071 Sum_probs=34.0
Q ss_pred CeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHH-H-HHhhcCCcchhh
Q 038651 26 SRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAI-A-GAYSENFPAATI 81 (324)
Q Consensus 26 i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgl-a-~A~~d~~Pvl~I 81 (324)
|+++..=++....-++..+-|+-. -+|..+. ||..+....++ + -+...++|+|..
T Consensus 41 iel~~~D~~~~p~~a~~~a~~li~~~~v~~vi-G~~~s~~~~a~~~~~~~~~~vp~i~~ 98 (312)
T cd06346 41 VTLVTADTQTDPAAGVAAATKLVNVDGVPGIV-GAACSGVTIAALTSVAVPNGVVMISP 98 (312)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCEEE-ccccchhhHhhhhhhhccCCcEEEec
Confidence 888888888888888888888742 2333332 55444444444 2 223456777754
No 296
>PF05124 S_layer_C: S-layer like family, C-terminal region ; InterPro: IPR022651 This entry represents the C-terminal domain of S-layer proteins. Some local similarity can be found to other S-layer protein families.
Probab=32.41 E-value=1.1e+02 Score=27.84 Aligned_cols=52 Identities=17% Similarity=0.068 Sum_probs=38.2
Q ss_pred hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc------cccCCcEEEEEcCc
Q 038651 84 LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM------IVEFADAYIFVESI 141 (324)
Q Consensus 84 L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~------~l~~aDlvl~lG~~ 141 (324)
+...++.+||+|+=+. -....+|.+++.+|+ +...+|+ ...+.+++++-|+.
T Consensus 150 ~~~~~~nlILVGGPva----N~~t~~l~~~~~i~i--~~~~~gvi~~~~~~~n~~~VivvAG~D 207 (222)
T PF05124_consen 150 LDEIDKNLILVGGPVA----NKLTKELNDEFPIKI--PGENPGVIQVIKNPFNGYDVIVVAGSD 207 (222)
T ss_pred cccCCCCEEEECCchH----HHHHHHHHhcCcccc--cCCCceEEEEEecCCCCCEEEEEeCCC
Confidence 6678999999999764 345677888888888 4445555 33477888888864
No 297
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=32.08 E-value=78 Score=29.89 Aligned_cols=54 Identities=7% Similarity=-0.108 Sum_probs=34.1
Q ss_pred CCCcEEEECCCCCccchHHHHHHHHHHh-CCcEEecCCC-CCc--------cc--cCCcEEEEEcCc
Q 038651 87 AVKPAMIGGPKLSVSKATIAFVELADAC-GYAFAVMPSA-KGM--------IV--EFADAYIFVESI 141 (324)
Q Consensus 87 AkrPvIl~G~g~~~~~a~~~l~~lae~l-~~Pv~tt~~g-kg~--------~l--~~aDlvl~lG~~ 141 (324)
.+|++|+.|.+... +..+.+.+..++. ...++.-..+ +.. .+ .++|+||+||..
T Consensus 23 ~~~~liv~~~~~~~-~~~~~v~~~l~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIaiGGG 88 (332)
T cd07766 23 FDRALVVSDEGVVK-GVGEKVADSLKKLIAVHIFDGVGPNPTFEEVKEAVERARAAEVDAVIAVGGG 88 (332)
T ss_pred CCeEEEEeCCchhh-hHHHHHHHHHHhcCcEEEeCCcCCCcCHHHHHHHHHHHHhcCcCEEEEeCCc
Confidence 47889999888765 6777777777664 2233322222 222 22 479999999973
No 298
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=32.07 E-value=1e+02 Score=29.60 Aligned_cols=54 Identities=9% Similarity=-0.061 Sum_probs=35.9
Q ss_pred CCCcEEEECCCCCccchHHHHHHHHHH-hCCcEEecCCCC---Cc-------------cccCCcEEEEEcCc
Q 038651 87 AVKPAMIGGPKLSVSKATIAFVELADA-CGYAFAVMPSAK---GM-------------IVEFADAYIFVESI 141 (324)
Q Consensus 87 AkrPvIl~G~g~~~~~a~~~l~~lae~-l~~Pv~tt~~gk---g~-------------~l~~aDlvl~lG~~ 141 (324)
.+|++|+.+..+.. ...+.+.+..+. .++.++.-..+. .. -...+|+||+||..
T Consensus 23 ~~k~livtd~~v~~-~~~~~v~~~L~~~~~~~~~~~~~~e~~k~~~~v~~~~~~~~~~~~~r~d~IIaiGGG 93 (344)
T cd08169 23 FDQYFFISDSGVAD-LIAHYIAEYLSKILPVHILVIEGGEEYKTFETVTRILERAIALGANRRTAIVAVGGG 93 (344)
T ss_pred CCeEEEEECccHHH-HHHHHHHHHHHhhcCceEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECCc
Confidence 47888998888765 566777777766 566554432222 22 13458999999974
No 299
>TIGR01564 S_layer_MJ S-layer protein, MJ0822 family. This model represents one of several families of proteins associated with the formation of prokaryotic S-layers. Members of this family are found in archaeal species, including Pyrococcus horikoshii (split into two tandem reading frames), Methanococcus jannaschii, and related species. Some local similarity can be found to other S-layer protein families.
Probab=32.05 E-value=72 Score=32.82 Aligned_cols=54 Identities=20% Similarity=0.026 Sum_probs=42.6
Q ss_pred hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc----cccCCcEEEEEcCc
Q 038651 84 LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM----IVEFADAYIFVESI 141 (324)
Q Consensus 84 L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~----~l~~aDlvl~lG~~ 141 (324)
|..+.+++||+|+-+.. ....+|.+++++|+-....+.=. .....|++|+.|+.
T Consensus 499 l~~~~~nlILVGGPv~N----~ltk~l~~~~~i~i~n~~p~~~~~~~~~~ng~~vlvvAG~d 556 (571)
T TIGR01564 499 LDNADKNLILVGGPVAN----KLTKELADAGKVPKTESSPATYAEKCGAANGYDVLVVAGGD 556 (571)
T ss_pred cccCCCCEEEECCcchh----HHHHHHHhcCceeccCCCcceeeeeccccCCceEEEEeCCC
Confidence 88999999999998753 45677888899998876665522 56788999999964
No 300
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=31.85 E-value=1.2e+02 Score=30.29 Aligned_cols=61 Identities=10% Similarity=0.084 Sum_probs=40.1
Q ss_pred EEEeCCcchHHHHHHHHHHhhcCCcchhhhhhhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCC
Q 038651 53 YVVTFIVGRLSIINAIAGAYSENFPAATITALLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAK 125 (324)
Q Consensus 53 ~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gk 125 (324)
++...|.|=|-++.-||..+. ..++.+.++-....|.++.+++..+++.+|+|+.......
T Consensus 246 LVGptGvGKTTTiaKLA~~L~------------~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~ 306 (436)
T PRK11889 246 LIGPTGVGKTTTLAKMAWQFH------------GKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEA 306 (436)
T ss_pred EECCCCCcHHHHHHHHHHHHH------------HcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHH
Confidence 345667777777777765542 2233344444444556799999999999999998654433
No 301
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=31.50 E-value=82 Score=35.50 Aligned_cols=114 Identities=13% Similarity=-0.022 Sum_probs=67.0
Q ss_pred CCcCCCC-chHHHHhhhcCC------CCeEeecCchHHHHHHHHHHh--------hhcC-ceEEEEeCCcchHHHHHHHH
Q 038651 6 PSSSPAD-SSSLLDHLIAEP------GSRDVGCCNELNAGYAADGSA--------RARA-VGAYVVTFIVGRLSIINAIA 69 (324)
Q Consensus 6 ~~~~pG~-~~~l~dal~~~~------~i~~i~~rhE~~A~~aAdgYa--------R~tg-~gv~~~t~GpG~~N~~tgla 69 (324)
-|.+||+ ...+.+.|.+.. +|.|-..-||-.|+-+|-|-- +..| .|.+ .-=|||.==+.=.+-
T Consensus 56 vsGYpGsP~~~id~~l~~~~~~l~~~~i~fe~~~NEkvAae~~~GsQ~~~~~~~a~~~Gv~~l~-y~K~pGvn~aaD~l~ 134 (1165)
T PRK09193 56 VSGYRGSPLGGLDQELWRAKKHLAAHDIVFQPGLNEDLAATAVWGSQQVNLFPGAKYDGVFGMW-YGKGPGVDRSGDVFR 134 (1165)
T ss_pred EEeeCCCCHHHHHHHHHHhhhhhcccceEEeeccCHHHHHHHHhhhcccccccceeeccceEEE-ecCcCCccccHhHHH
Confidence 3678999 999999887643 499999999999999996653 3345 3444 346788422222332
Q ss_pred HHhhcCC----cchhhhh-----------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEe
Q 038651 70 GAYSENF----PAATITA-----------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAV 120 (324)
Q Consensus 70 ~A~~d~~----Pvl~It~-----------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~t 120 (324)
.+-..++ =||+|++ ...|+=||+-=..---..+....--+|.|..|+||.-
T Consensus 135 ~~n~~G~~~~GGvv~v~gDDpg~~SSq~eqdSr~~~~~a~iPvl~Ps~~qE~~d~~~~g~~lSr~~g~pV~l 206 (1165)
T PRK09193 135 HANAAGTSPHGGVLALAGDDHAAKSSTLPHQSEHAFKAAGMPVLFPANVQEILDYGLHGWAMSRYSGLWVGM 206 (1165)
T ss_pred HHHhhcCCCCCcEEEEEecCCCCccccchhhhHHHHHHcCCceeCCCCHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 2222222 3555532 5566667665332111112233445667777777763
No 302
>PRK10427 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=31.35 E-value=75 Score=25.57 Aligned_cols=59 Identities=10% Similarity=0.068 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHhCCcEEecCCC-CCc-------cccCCcEEEEEcCcc-CCcccccccccCCCCEEEEcCCcc
Q 038651 103 ATIAFVELADACGYAFAVMPSA-KGM-------IVEFADAYIFVESIF-NDYSSVGYSLLLNKKAILMQPDRI 166 (324)
Q Consensus 103 a~~~l~~lae~l~~Pv~tt~~g-kg~-------~l~~aDlvl~lG~~~-~~~~t~~~~~~~~~~iI~id~d~~ 166 (324)
+.+.|++-+++.|+.+.....| -|+ -++.||+||++|..- .+.. .|..+++++++++..
T Consensus 21 AAeaL~kAA~~~G~~i~VE~qg~~g~~~~lt~~~i~~Ad~VIia~d~~~~~~~-----rF~gk~v~~~s~~~a 88 (114)
T PRK10427 21 AAERLEKLCQLEKWGVKIETQGALGTENRLTDEDIRRADVVLLITDIELAGAE-----RFEHCRYVQCSIYAF 88 (114)
T ss_pred HHHHHHHHHHHCCCeEEEEecCCcCcCCCCCHHHHHhCCEEEEEecCCCCchh-----hhCCCeEEEecHHHH
Confidence 5689999999999999854444 344 578999999999765 2221 122223777766643
No 303
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=31.33 E-value=2.1e+02 Score=31.40 Aligned_cols=42 Identities=21% Similarity=0.156 Sum_probs=29.9
Q ss_pred CCeEEEecCchHHhhhH-HHHHHHHHHhCCCeEEEEEeCCchh
Q 038651 209 NTAVIAETGDSWFNCQK-DVDVSTMLRCEQKNIIFLINNGNYT 250 (324)
Q Consensus 209 ~~~vv~d~G~~~~~~~~-~qEL~Ta~r~~lpviivV~NN~~yg 250 (324)
+..|.|..||+-+.=.. ..-+..|.+++|.=.|+|+|++...
T Consensus 218 ~~rVy~llGDGEl~EG~~wEA~~~Aa~~kLdNLi~IvD~N~~q 260 (889)
T TIGR03186 218 GRKVWGFFGDGEMDEPESIGALSLAARERLDNLVFVINCNLQR 260 (889)
T ss_pred CceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEeCCCCc
Confidence 45678888988653221 2558889999998778888777753
No 304
>PRK10474 putative PTS system fructose-like transporter subunit EIIB; Provisional
Probab=31.06 E-value=81 Score=23.97 Aligned_cols=58 Identities=22% Similarity=0.168 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHhCCcEEecCCC-CCc-------cccCCcEEEEEcCcc-CCcccccccccCCCCEEEEcCCc
Q 038651 103 ATIAFVELADACGYAFAVMPSA-KGM-------IVEFADAYIFVESIF-NDYSSVGYSLLLNKKAILMQPDR 165 (324)
Q Consensus 103 a~~~l~~lae~l~~Pv~tt~~g-kg~-------~l~~aDlvl~lG~~~-~~~~t~~~~~~~~~~iI~id~d~ 165 (324)
+.+.|++.++++|+-+.....| -|+ -++.||+||++|..- .+.. .+...++++++++.
T Consensus 2 AAeaL~~aA~~~G~~i~VEtqg~~g~~~~lt~~~i~~Ad~VIia~d~~i~~~~-----rf~gk~v~~~s~~~ 68 (88)
T PRK10474 2 AAEALESAAKAKGWEVKVETQGSIGLENELTAEDVASADMVILTKDIGIKFEE-----RFAGKTIVRVNISD 68 (88)
T ss_pred HHHHHHHHHHHCCCeEEEEecCCcCcCCCCCHHHHHhCCEEEEEecCCCcchh-----ccCCCceEEecHHH
Confidence 4578999999999998854444 454 578999999999765 2221 12222377776654
No 305
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=31.01 E-value=1.4e+02 Score=31.09 Aligned_cols=84 Identities=11% Similarity=0.068 Sum_probs=45.2
Q ss_pred EEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhh-hhC----C---CCCCC--CCCCHHHHHHHHHHHHHH
Q 038651 212 VIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVE-IHD----G---PYNVI--ENWNYTGLVEAFQNAIET 281 (324)
Q Consensus 212 vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~-~~~----~---~~~~l--~~~df~~lA~a~G~al~~ 281 (324)
+++-.|-+...+ +.-|..|.+.++|+++|.-.-......+. +|+ . +++.. .-.+=..+.+.+--|++.
T Consensus 98 ~~~t~GPG~~N~--l~gl~~A~~~~~PllvI~G~~~~~~~~~~~~q~~d~~~l~~~~tk~s~~v~~~~~i~~~l~~A~~~ 175 (612)
T PRK07789 98 CMATSGPGATNL--VTPIADANMDSVPVVAITGQVGRGLIGTDAFQEADIVGITMPITKHNFLVTDADDIPRVIAEAFHI 175 (612)
T ss_pred EEECCCccHHHH--HHHHHHHhhcCCCEEEEecCCCccccCCCcCcccchhhhhhcceeEEEEcCCHHHHHHHHHHHHHH
Confidence 344456655443 35699999999999999875444322111 110 0 11100 001223333333335555
Q ss_pred hHHhCCCCeEEEEEEec
Q 038651 282 AAVEKKDCLCFIEAIVH 298 (324)
Q Consensus 282 a~~~~~~~p~lIeV~id 298 (324)
|. ....||+.|||..|
T Consensus 176 A~-~~~~GPV~l~iP~D 191 (612)
T PRK07789 176 AS-TGRPGPVLVDIPKD 191 (612)
T ss_pred Hh-cCCCceEEEEEccc
Confidence 53 23469999999987
No 306
>PHA02542 41 41 helicase; Provisional
Probab=30.96 E-value=54 Score=33.15 Aligned_cols=36 Identities=14% Similarity=0.005 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhCCcEEe-cCCCCCc----------------cccCCcEEEEEc
Q 038651 104 TIAFVELADACGYAFAV-MPSAKGM----------------IVEFADAYIFVE 139 (324)
Q Consensus 104 ~~~l~~lae~l~~Pv~t-t~~gkg~----------------~l~~aDlvl~lG 139 (324)
...|..||..+++||+. +...|++ +-+.||+|+.+=
T Consensus 333 sr~LK~lAkel~vpVi~lsQLnR~~e~r~dP~lsDLreSG~IEqdAD~vl~l~ 385 (473)
T PHA02542 333 AEELRGLAVEHDVVVWTAAQTTRSGWDSSDVDMSDTAESAGLPATADFMLAVI 385 (473)
T ss_pred HHHHHHHHHHhCCeEEEEEeeCccccccCCCcchhcccccchHhhcCEEEEEe
Confidence 46889999999999975 5556655 567999999983
No 307
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=30.92 E-value=96 Score=30.03 Aligned_cols=52 Identities=12% Similarity=0.076 Sum_probs=35.0
Q ss_pred CCCcEEEECCCCCccchHHHHHHHHHHhCCcEEec-CCCCC----c-----c--ccCCcEEEEEcCc
Q 038651 87 AVKPAMIGGPKLSVSKATIAFVELADACGYAFAVM-PSAKG----M-----I--VEFADAYIFVESI 141 (324)
Q Consensus 87 AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt-~~gkg----~-----~--l~~aDlvl~lG~~ 141 (324)
.+|++|+.|.+.. ..+.+.+..+..|+.+..- ..+.- + . -.++|+||+||..
T Consensus 22 ~~r~livtd~~~~---~~~~v~~~L~~~g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~IIaiGGG 85 (374)
T cd08183 22 GRRVLLVTGASSL---RAAWLIEALRAAGIEVTHVVVAGEPSVELVDAAVAEARNAGCDVVIAIGGG 85 (374)
T ss_pred CCcEEEEECCchH---HHHHHHHHHHHcCCeEEEecCCCCcCHHHHHHHHHHHHhcCCCEEEEecCc
Confidence 4899999998774 5677777778888765431 11110 0 2 2489999999965
No 308
>cd03414 CbiX_SirB_C Sirohydrochlorin cobalt chelatase (CbiX) and sirohydrochlorin iron chelatase (SirB), C-terminal domain. SirB catalyzes the ferro-chelation of sirohydrochlorin to siroheme, the prosthetic group of sulfite and nitrite reductases. CbiX is a cobaltochelatase, responsible for the chelation of Co2+ into sirohydrochlorin, an important step in the vitamin B12 biosynthetic pathway. CbiX often contains a C-terminal histidine-rich region that may be important for metal delivery and/or storage, and may also contain an iron-sulfur center. Both CbiX and SirB are found in a wide range of bacteria.
Probab=30.71 E-value=58 Score=25.60 Aligned_cols=35 Identities=14% Similarity=0.051 Sum_probs=26.4
Q ss_pred cEEEECCCCCccchHHHHHHHHHHhC-----CcEEecCCC
Q 038651 90 PAMIGGPKLSVSKATIAFVELADACG-----YAFAVMPSA 124 (324)
Q Consensus 90 PvIl~G~g~~~~~a~~~l~~lae~l~-----~Pv~tt~~g 124 (324)
-+|++|.|.++..+.+.+.++++++. .||.+.++.
T Consensus 2 a~llv~HGS~~~~~~~~~~~l~~~l~~~~~~~~v~~afle 41 (117)
T cd03414 2 AVVLVGRGSSDPDANADVAKIARLLEEGTGFARVETAFAA 41 (117)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 37899999987778888999888773 556655443
No 309
>PF10137 TIR-like: Predicted nucleotide-binding protein containing TIR-like domain; InterPro: IPR019302 This entry represents a TIR-like domain found in a family of prokaryotic predicted nucleotide-binding proteins. Their exact function has not, as yet, been defined.
Probab=30.68 E-value=1.1e+02 Score=24.99 Aligned_cols=51 Identities=12% Similarity=-0.033 Sum_probs=35.6
Q ss_pred EEECCCCCccchHHHHHHHHHHhCCcEEecCCC--CCc--------cccCCcEEEEEcCccC
Q 038651 92 MIGGPKLSVSKATIAFVELADACGYAFAVMPSA--KGM--------IVEFADAYIFVESIFN 143 (324)
Q Consensus 92 Il~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~g--kg~--------~l~~aDlvl~lG~~~~ 143 (324)
|++|+| ....+.+++.++.+++++.++.-..+ .|- .++++|..|++-|.-+
T Consensus 2 VFIvhg-~~~~~~~~v~~~L~~~~~ep~i~~~~~~~g~tiie~le~~~~~~~faIvl~TpDD 62 (125)
T PF10137_consen 2 VFIVHG-RDLAAAEAVERFLEKLGLEPIIWHEQPNLGQTIIEKLEEAADSVDFAIVLFTPDD 62 (125)
T ss_pred EEEEeC-CCHHHHHHHHHHHHhCCCceEEeecCCCCCCchHHHHHHHhccCCEEEEEEcccc
Confidence 456676 55678889999999999776643222 222 6678998888877653
No 310
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=30.65 E-value=98 Score=21.88 Aligned_cols=48 Identities=17% Similarity=0.112 Sum_probs=31.2
Q ss_pred cEEEECCCCCccc-hHHHHHHHHHHhCCcEEecCCCCC--ccccCCcEEEE
Q 038651 90 PAMIGGPKLSVSK-ATIAFVELADACGYAFAVMPSAKG--MIVEFADAYIF 137 (324)
Q Consensus 90 PvIl~G~g~~~~~-a~~~l~~lae~l~~Pv~tt~~gkg--~~l~~aDlvl~ 137 (324)
-+++++.|...+. ....|++..+..+++...+...-. ....+.|+|+.
T Consensus 2 il~vc~~G~~~s~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~dliit 52 (84)
T cd00133 2 ILVVCGSGIGSSSMLAEKLEKAAKELGIEVKVEAQGLSEVIDLADADLIIS 52 (84)
T ss_pred EEEECCCcHhHHHHHHHHHHHHHHHCCCeEEEEEcccchhhhcCCccEEEE
Confidence 4678888854433 567899999999998665544333 23456665544
No 311
>CHL00198 accA acetyl-CoA carboxylase carboxyltransferase alpha subunit; Provisional
Probab=30.57 E-value=60 Score=31.13 Aligned_cols=95 Identities=13% Similarity=0.001 Sum_probs=54.4
Q ss_pred HHHhhhcCceEEE--EeCC---------------c-chHHHHHHHHHHhhcCCcchhhhhhhcCCCcEEEECCCCCccch
Q 038651 42 DGSARARAVGAYV--VTFI---------------V-GRLSIINAIAGAYSENFPAATITALLKAVKPAMIGGPKLSVSKA 103 (324)
Q Consensus 42 dgYaR~tg~gv~~--~t~G---------------p-G~~N~~tgla~A~~d~~Pvl~It~L~~AkrPvIl~G~g~~~~~a 103 (324)
.|++|+.|..|++ -..| | |.-.++-.+--|-.-+.|+|.+.==..| + .|.++-..+.
T Consensus 103 ~Glgri~GrpV~VIa~dkg~~~~e~~~~~~G~~~p~g~rKa~Rlm~lA~~f~lPIItlvDTpGA-~----~G~~AE~~G~ 177 (322)
T CHL00198 103 GGIGKINGRTIVFLGHQRGRNTKENVLRNFGMPSPGGYRKALRLMKHANKFGLPILTFIDTPGA-W----AGVKAEKLGQ 177 (322)
T ss_pred EEEEEECCEEEEEEEecCCccchhhhhhcCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCc-C----cCHHHHHHhH
Confidence 4889998833333 2222 2 4455566666777777787765210111 1 2333322222
Q ss_pred HHHHHHHH---HHhCCcEEecCCCCCc-----cccCCcEEEEEcCc
Q 038651 104 TIAFVELA---DACGYAFAVMPSAKGM-----IVEFADAYIFVESI 141 (324)
Q Consensus 104 ~~~l~~la---e~l~~Pv~tt~~gkg~-----~l~~aDlvl~lG~~ 141 (324)
...+.+.. ..+.+|+++...|+|. .+.-+|.|+++-..
T Consensus 178 ~~aiar~l~~~a~~~VP~IsVViGeggsGGAlal~~aD~V~m~e~a 223 (322)
T CHL00198 178 GEAIAVNLREMFSFEVPIICTIIGEGGSGGALGIGIGDSIMMLEYA 223 (322)
T ss_pred HHHHHHHHHHHHcCCCCEEEEEeCcccHHHHHhhhcCCeEEEeCCe
Confidence 33444433 3557999999988875 55568999988653
No 312
>PF12813 XPG_I_2: XPG domain containing
Probab=30.46 E-value=73 Score=29.17 Aligned_cols=41 Identities=20% Similarity=0.094 Sum_probs=32.5
Q ss_pred hhhcC---CCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCccccCCcEEEE
Q 038651 83 ALLKA---VKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGMIVEFADAYIF 137 (324)
Q Consensus 83 ~L~~A---krPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~~l~~aDlvl~ 137 (324)
.|++. +.+++++-+.+ -.++.++|.++|+||+|. ++|++|.
T Consensus 12 ~L~~~~~~~~~~~~~~~EA-----D~~~A~~A~~~~~~VLt~---------DSDf~I~ 55 (246)
T PF12813_consen 12 ALRESWRYGVPVVQCPGEA-----DRECAALARKWGCPVLTN---------DSDFLIH 55 (246)
T ss_pred HHHHHhhcCCcEEEcCccc-----hHHHHHHHHHcCCeEEcc---------CCCEEEe
Confidence 36676 88888886654 467899999999999975 6898775
No 313
>TIGR00789 flhB_rel flhB C-terminus-related protein. This model describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set.
Probab=30.44 E-value=72 Score=24.14 Aligned_cols=33 Identities=15% Similarity=0.234 Sum_probs=24.2
Q ss_pred CCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecC
Q 038651 87 AVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMP 122 (324)
Q Consensus 87 AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~ 122 (324)
..-|.+++=|-- ...+.++++|++.|+|++...
T Consensus 15 ~~aP~VvAKG~g---~~A~~I~~~A~e~~VPi~~~~ 47 (82)
T TIGR00789 15 DKAPKVVASGVG---EVAERIIEIAKKHGIPIVEDP 47 (82)
T ss_pred CCCCEEEEEeCC---HHHHHHHHHHHHcCCCEEeCH
Confidence 345777764322 356789999999999999764
No 314
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=30.44 E-value=53 Score=31.39 Aligned_cols=95 Identities=16% Similarity=0.108 Sum_probs=50.2
Q ss_pred HHHHhhhcCceEEEEeCCc------------------chHHHHHHHHHHhhcCCcchhhhhhhcCCCcEEEECCCCCccc
Q 038651 41 ADGSARARAVGAYVVTFIV------------------GRLSIINAIAGAYSENFPAATITALLKAVKPAMIGGPKLSVSK 102 (324)
Q Consensus 41 AdgYaR~tg~gv~~~t~Gp------------------G~~N~~tgla~A~~d~~Pvl~It~L~~AkrPvIl~G~g~~~~~ 102 (324)
-.|++|+.|..|.++..=+ |.--++-.+--|-.-+.|||.+.= -|=...|.++-..+
T Consensus 99 VtG~ari~GrpV~VIa~d~g~~~~e~~~~~~G~~~p~g~rKa~R~m~lA~~f~iPvVtlvD-----TpGa~~g~~aE~~G 173 (316)
T TIGR00513 99 VGGIARLDGRPVVVIGHQKGRDTKEKLRRNFGMPAPEGYRKALRLMKMAERFKMPIITFID-----TPGAYPGIGAEERG 173 (316)
T ss_pred EEEEEEECCEEEEEEEecCCccccccccccCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEE-----CCCCCCCHHHHHHH
Confidence 3588999883333322222 334444555566666777765410 01111122221112
Q ss_pred hHHHHHHHHH---HhCCcEEecCCCCCc-----cccCCcEEEEEcC
Q 038651 103 ATIAFVELAD---ACGYAFAVMPSAKGM-----IVEFADAYIFVES 140 (324)
Q Consensus 103 a~~~l~~lae---~l~~Pv~tt~~gkg~-----~l~~aDlvl~lG~ 140 (324)
....+.++.. .+.+|.++-..|+|. .+.-+|.++++=.
T Consensus 174 ~~~aia~~l~a~s~~~VP~IsVViGeggsGGAla~~~aD~v~m~~~ 219 (316)
T TIGR00513 174 QSEAIARNLREMARLGVPVICTVIGEGGSGGALAIGVGDKVNMLEY 219 (316)
T ss_pred HHHHHHHHHHHHHcCCCCEEEEEecccccHHHhhhccCCEEEEecC
Confidence 2233444332 346999998888864 5557888887754
No 315
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=30.38 E-value=73 Score=30.50 Aligned_cols=53 Identities=21% Similarity=0.104 Sum_probs=33.8
Q ss_pred CCcEEEECCCCCccchHHHHHHHHHHhCCcEEe-cCCCC-Cc--------cc--cCCcEEEEEcCc
Q 038651 88 VKPAMIGGPKLSVSKATIAFVELADACGYAFAV-MPSAK-GM--------IV--EFADAYIFVESI 141 (324)
Q Consensus 88 krPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~t-t~~gk-g~--------~l--~~aDlvl~lG~~ 141 (324)
+|++|+.|..... ...+++.+..++.++.+.. .+.+- .. .+ .++|+||+||..
T Consensus 23 ~~~liv~~~~~~~-~~~~~v~~~l~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGG 87 (349)
T cd08550 23 SKVAVVGGKTVLK-KSRPRFEAALAKSIIVVDVIVFGGECSTEEVVKALCGAEEQEADVIIGVGGG 87 (349)
T ss_pred CeEEEEEChHHHH-HHHHHHHHHHHhcCCeeEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEecCc
Confidence 7888888877654 5667777777777765322 23222 11 22 478999999973
No 316
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=30.32 E-value=57 Score=31.10 Aligned_cols=54 Identities=9% Similarity=-0.039 Sum_probs=32.2
Q ss_pred CCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCC-Cc--------cc--cCCcEEEEEcCc
Q 038651 87 AVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAK-GM--------IV--EFADAYIFVESI 141 (324)
Q Consensus 87 AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gk-g~--------~l--~~aDlvl~lG~~ 141 (324)
.||++|+.|.+.... ..+.+.+..++.+.-++.....- .. .+ .++|+||+||..
T Consensus 23 ~~~~livt~~~~~~~-~~~~v~~~l~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIaiGGG 87 (337)
T cd08177 23 ASRALVLTTPSLATK-LAERVASALGDRVAGTFDGAVMHTPVEVTEAAVAAAREAGADGIVAIGGG 87 (337)
T ss_pred CCeEEEEcChHHHHH-HHHHHHHHhccCCcEEeCCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 478888888877654 56666666665544333211110 01 22 478999999973
No 317
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=30.31 E-value=69 Score=30.92 Aligned_cols=53 Identities=9% Similarity=-0.055 Sum_probs=34.3
Q ss_pred CCcEEEECCCCCccchHHHHHHHHHHhCCcEEe-cCCCCCc---------c--ccCCcEEEEEcCc
Q 038651 88 VKPAMIGGPKLSVSKATIAFVELADACGYAFAV-MPSAKGM---------I--VEFADAYIFVESI 141 (324)
Q Consensus 88 krPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~t-t~~gkg~---------~--l~~aDlvl~lG~~ 141 (324)
+|++|+.|.+... ...+.+.+..+..++.+.. ...+--. . -.++|+||+||..
T Consensus 30 ~~~livtd~~~~~-~~~~~v~~~l~~~~~~~~~~~~~~ep~~~~v~~~~~~~~~~~~d~IIavGGG 94 (366)
T PRK09423 30 KRALVIADEFVLG-IVGDRVEASLKEAGLTVVFEVFNGECSDNEIDRLVAIAEENGCDVVIGIGGG 94 (366)
T ss_pred CEEEEEEChhHHH-HHHHHHHHHHHhCCCeEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEecCh
Confidence 7888888887754 3667777777777776532 1211111 2 2478999999964
No 318
>PLN02757 sirohydrochlorine ferrochelatase
Probab=30.14 E-value=58 Score=27.61 Aligned_cols=29 Identities=7% Similarity=0.015 Sum_probs=24.7
Q ss_pred CCCcEEEECCCCCccchHHHHHHHHHHhC
Q 038651 87 AVKPAMIGGPKLSVSKATIAFVELADACG 115 (324)
Q Consensus 87 AkrPvIl~G~g~~~~~a~~~l~~lae~l~ 115 (324)
.+.-+|++|.|.+...+.+++.+|++++.
T Consensus 12 ~~~~lllvgHGSrd~~a~~~~~~la~~l~ 40 (154)
T PLN02757 12 DKDGVVIVDHGSRRKESNLMLEEFVAMYK 40 (154)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 35689999999999888899999888874
No 319
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=29.76 E-value=1.7e+02 Score=29.93 Aligned_cols=79 Identities=10% Similarity=0.113 Sum_probs=44.3
Q ss_pred EEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhhCCCCCCCCCCCHHHHHHHHHH---------------
Q 038651 213 IAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIHDGPYNVIENWNYTGLVEAFQN--------------- 277 (324)
Q Consensus 213 v~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~~~~~~l~~~df~~lA~a~G~--------------- 277 (324)
++-.|-+...+ +.-+.+|...++|+++|.-.-...... ... .++...|...+.+.+-.
T Consensus 70 ~~t~GPG~~N~--~~gia~A~~~~~Pvl~I~G~~~~~~~~--~~~---~~~q~~d~~~~~~~vtk~~~~v~~~~~~~~~i 142 (554)
T TIGR03254 70 LTVSAPGFLNG--LTALANATTNCFPMIMISGSSERHIVD--LQQ---GDYEEMDQLAAAKPFAKAAYRVLRAEDIGIGI 142 (554)
T ss_pred EEccCccHHhH--HHHHHHHHhcCCCEEEEEccCCccccc--cCC---CCcchhhHHHHhhhhheeEEEcCCHHHHHHHH
Confidence 33345544433 356999999999999998765432110 000 11222344444443332
Q ss_pred --HHHHhHHhCCCCeEEEEEEecC
Q 038651 278 --AIETAAVEKKDCLCFIEAIVHK 299 (324)
Q Consensus 278 --al~~a~~~~~~~p~lIeV~id~ 299 (324)
|++.|. ....||+.||+..|-
T Consensus 143 ~rA~~~A~-~~~pGPV~l~iP~Dv 165 (554)
T TIGR03254 143 ARAIRTAV-SGRPGGVYLDLPAAV 165 (554)
T ss_pred HHHHHHHh-cCCCCcEEEEcCHHH
Confidence 455443 245689999998773
No 320
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=29.75 E-value=3.7e+02 Score=24.81 Aligned_cols=55 Identities=15% Similarity=0.039 Sum_probs=33.7
Q ss_pred CeEeecCchHHHHHHHHHHhhhc---CceEEEEeCCcchHHHHHHHHHHhhcCCcchhhh
Q 038651 26 SRDVGCCNELNAGYAADGSARAR---AVGAYVVTFIVGRLSIINAIAGAYSENFPAATIT 82 (324)
Q Consensus 26 i~~i~~rhE~~A~~aAdgYaR~t---g~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It 82 (324)
|+++..=.+....-+...+.++- ++-+++...+.+.+..+..++ -..++|+|..+
T Consensus 45 i~l~~~D~~~~~~~a~~~~~~li~~~~v~aviG~~~s~~~~a~~~~~--~~~~vp~i~~~ 102 (345)
T cd06338 45 VELIYYDDQSNPARAARAYERLITQDKVDFLLGPYSSGLTLAAAPVA--EKYGVPMVAGS 102 (345)
T ss_pred EEEEEecCCCCHHHHHHHHHHHHhhcCccEEecCCcchhHHHHHHHH--HHhCCcEEecC
Confidence 78888777777888888888874 233334333334444444433 34578888763
No 321
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=29.69 E-value=1.8e+02 Score=26.07 Aligned_cols=82 Identities=20% Similarity=0.153 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhhhcCceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhhhh----------cCCCcEEEECCCCCccchH
Q 038651 35 LNAGYAADGSARARAVGAYVVTFIVGRLSIINAIAGAYSENFPAATITALL----------KAVKPAMIGGPKLSVSKAT 104 (324)
Q Consensus 35 ~~A~~aAdgYaR~tg~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~L~----------~AkrPvIl~G~g~~~~~a~ 104 (324)
.+|+++||=.+..+|.|++.+-+ |- |... ......|=++...+. -.+-=++++|.|.-+.+..
T Consensus 21 ~GA~~la~~~a~~~G~g~vt~~~-~~--~~~~----~~~~~~pe~i~~~~~~~~~~~~~~~~~~~d~v~ig~gl~~~~~~ 93 (254)
T cd01171 21 TGAAYLAALAALRAGAGLVTVAT-PP--EAAA----VIKSYSPELMVHPLLETDIEELLELLERADAVVIGPGLGRDEEA 93 (254)
T ss_pred ccHHHHHHHHHHHHccCEEEEEE-CH--hhHH----HHHhcCceeeEecccccchHHHHhhhccCCEEEEecCCCCCHHH
Confidence 57888888877777877765433 32 2222 222222322221111 1233478889988765666
Q ss_pred HHHHHHHHHhCCcEEecCC
Q 038651 105 IAFVELADACGYAFAVMPS 123 (324)
Q Consensus 105 ~~l~~lae~l~~Pv~tt~~ 123 (324)
+++.+.+.+.++||+-...
T Consensus 94 ~~i~~~~~~~~~pvVlDa~ 112 (254)
T cd01171 94 AEILEKALAKDKPLVLDAD 112 (254)
T ss_pred HHHHHHHHhcCCCEEEEcH
Confidence 7777777777899886543
No 322
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=29.54 E-value=1.2e+02 Score=28.83 Aligned_cols=71 Identities=11% Similarity=0.010 Sum_probs=39.3
Q ss_pred EeCCcchHHHHHHHHHHhhcCCcchhhhhhhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc-------
Q 038651 55 VTFIVGRLSIINAIAGAYSENFPAATITALLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM------- 127 (324)
Q Consensus 55 ~t~GpG~~N~~tgla~A~~d~~Pvl~It~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~------- 127 (324)
+..|+|+.+-+.....-+ ....+|++|+.|..+ .+.+.+..+..++-.+.....++.
T Consensus 4 i~~G~g~l~~l~~~l~~~-----------~~~~~r~livtd~~~-----~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~ 67 (331)
T cd08174 4 LDIGEGAIARLGELLSDR-----------NPNFGRVAVVSGPGV-----GEQVAESLKTSFSAEVEAVEEVSNSDAEEIG 67 (331)
T ss_pred EEECcCHHHHHHHHHHHH-----------HhcCCceEEEECCcH-----HHHHHHHHHhccCceEEEecCCCccCHHHHH
Confidence 345777766555442100 012478888888765 445566555555422222223433
Q ss_pred ----cccCCcEEEEEcCc
Q 038651 128 ----IVEFADAYIFVESI 141 (324)
Q Consensus 128 ----~l~~aDlvl~lG~~ 141 (324)
..+++|+||++|..
T Consensus 68 ~~~~~~~~~d~iIaiGGG 85 (331)
T cd08174 68 ARARSIPNVDAVVGIGGG 85 (331)
T ss_pred HHHHhccCCCEEEEeCCc
Confidence 22268999999973
No 323
>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=29.36 E-value=4.5e+02 Score=24.52 Aligned_cols=56 Identities=14% Similarity=-0.057 Sum_probs=31.0
Q ss_pred CeEeecCchHHHHHHHHHHhhhc-CceEEEEeCCcchHHHHHHHHH-HhhcCCcchhhh
Q 038651 26 SRDVGCCNELNAGYAADGSARAR-AVGAYVVTFIVGRLSIINAIAG-AYSENFPAATIT 82 (324)
Q Consensus 26 i~~i~~rhE~~A~~aAdgYaR~t-g~gv~~~t~GpG~~N~~tgla~-A~~d~~Pvl~It 82 (324)
++++..=++....-+...+.++- .-+|..+. ||..+....+++. +-..++|+|..+
T Consensus 44 v~lv~~D~~~~~~~a~~~~~~li~~~~v~aii-G~~~s~~~~a~~~~~~~~~ip~i~~~ 101 (347)
T cd06340 44 LELVFGDSQGNPDIGATEAERLITEEGVVALV-GAYQSAVTLAASQVAERYGVPFVVDG 101 (347)
T ss_pred EEEEEecCCCCHHHHHHHHHHHhccCCceEEe-cccchHhHHHHHHHHHHhCCCEEecc
Confidence 67776666666666677777754 33444332 4443333333332 224589998763
No 324
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=29.05 E-value=1e+02 Score=25.67 Aligned_cols=23 Identities=9% Similarity=-0.114 Sum_probs=18.9
Q ss_pred CccchHHHHHHHHHHhCCcEEec
Q 038651 99 SVSKATIAFVELADACGYAFAVM 121 (324)
Q Consensus 99 ~~~~a~~~l~~lae~l~~Pv~tt 121 (324)
..++-++++.+-++..++||.-+
T Consensus 9 IHtdWRe~I~~ga~~~~L~v~F~ 31 (144)
T TIGR03646 9 IHTDWREEIKEGAKSKNLPIVFS 31 (144)
T ss_pred ccchHHHHHHHHHHHcCCCeEEe
Confidence 34678899999999999998643
No 325
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=28.88 E-value=2e+02 Score=27.00 Aligned_cols=73 Identities=15% Similarity=0.092 Sum_probs=43.4
Q ss_pred EEeCCcchHHHHHHHHHHhhcCCcchhhhh----hhc--CCCcEEEECC------CCC--c-------cchHHHHHHHHH
Q 038651 54 VVTFIVGRLSIINAIAGAYSENFPAATITA----LLK--AVKPAMIGGP------KLS--V-------SKATIAFVELAD 112 (324)
Q Consensus 54 ~~t~GpG~~N~~tgla~A~~d~~Pvl~It~----L~~--AkrPvIl~G~------g~~--~-------~~a~~~l~~lae 112 (324)
++--|-+..|+++-|...-..++..+++-. |.. +++= |++|. |+- + ....+++++.+|
T Consensus 5 viGvGg~G~n~v~~l~~~~~~~~~~~a~ntD~~~L~~~~~~~k-~~ig~~~t~g~Gag~~~~~g~~~a~~~~~~I~~~l~ 83 (304)
T cd02201 5 VIGVGGGGGNAVNRMIESGLEGVEFIAANTDAQALAKSKAPNK-IQLGKELTRGLGAGGDPEVGRKAAEESREEIKEALE 83 (304)
T ss_pred EEEeCCcHHHHHHHHHHcCCCCceEEEEECCHHHHhcCCCCcE-EEcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 334455667999999888777777777721 322 2232 33432 211 1 112356677777
Q ss_pred HhCCcEEecCCCCCc
Q 038651 113 ACGYAFAVMPSAKGM 127 (324)
Q Consensus 113 ~l~~Pv~tt~~gkg~ 127 (324)
....-+++..+|.|.
T Consensus 84 ~~d~v~i~aglGGGT 98 (304)
T cd02201 84 GADMVFITAGMGGGT 98 (304)
T ss_pred CCCEEEEeeccCCCc
Confidence 777777777777665
No 326
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=28.45 E-value=73 Score=30.47 Aligned_cols=53 Identities=19% Similarity=0.122 Sum_probs=34.2
Q ss_pred CCcEEEECCCCCccchHHHHHHHHHHhCCcEEe--cCCCCCc-----------cccCCcEEEEEcCc
Q 038651 88 VKPAMIGGPKLSVSKATIAFVELADACGYAFAV--MPSAKGM-----------IVEFADAYIFVESI 141 (324)
Q Consensus 88 krPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~t--t~~gkg~-----------~l~~aDlvl~lG~~ 141 (324)
+|++|+.|.... ....+.+.+..+..++-+.. ...+.-- .-.++|+||+||..
T Consensus 23 ~r~liv~d~~~~-~~~~~~v~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~iiavGGG 88 (345)
T cd08171 23 KKVVVIGGKTAL-AAAKDKIKAALEQSGIEITDFIWYGGESTYENVERLKKNPAVQEADMIFAVGGG 88 (345)
T ss_pred CEEEEEeCHHHH-HHHHHHHHHHHHHCCCeEEEEEecCCCCCHHHHHHHHHHHhhcCCCEEEEeCCc
Confidence 788899887654 34567777777777776532 2222111 22578999999974
No 327
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=28.14 E-value=1.5e+02 Score=30.51 Aligned_cols=84 Identities=8% Similarity=0.062 Sum_probs=46.4
Q ss_pred EEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhh-hhC--C--CCCCCCCC-----CHHHHHHHHHHHHHH
Q 038651 212 VIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVE-IHD--G--PYNVIENW-----NYTGLVEAFQNAIET 281 (324)
Q Consensus 212 vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~-~~~--~--~~~~l~~~-----df~~lA~a~G~al~~ 281 (324)
+++-.|-+...+ +.-+.+|.+.++|++++.-.-..+..-+. +|+ . -+..+..| +=..+.+.+--|++.
T Consensus 67 ~~~t~GPG~~n~--~~~i~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~id~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~ 144 (575)
T TIGR02720 67 CFGSAGPGATHL--LNGLYDAKEDHVPVLALVGQVPTTGMNMDTFQEMNENPIYADVAVYNRTAMTAESLPHVIDEAIRR 144 (575)
T ss_pred EEeCCCCcHHHH--HHHHHHHhhcCCCEEEEecCCccccCCCCCcceechhhhhhhcceEEEEeCCHHHHHHHHHHHHHH
Confidence 344445554433 25699999999999999876554432211 111 0 00001011 122333333336776
Q ss_pred hHHhCCCCeEEEEEEecC
Q 038651 282 AAVEKKDCLCFIEAIVHK 299 (324)
Q Consensus 282 a~~~~~~~p~lIeV~id~ 299 (324)
|. ...||+.|||..|-
T Consensus 145 A~--~~~GPV~l~iP~Dv 160 (575)
T TIGR02720 145 AY--AHNGVAVVTIPVDF 160 (575)
T ss_pred Hh--hCCCCEEEEECcch
Confidence 65 46799999999874
No 328
>PRK05782 bifunctional sirohydrochlorin cobalt chelatase/precorrin-8X methylmutase; Validated
Probab=27.95 E-value=81 Score=30.41 Aligned_cols=38 Identities=5% Similarity=-0.047 Sum_probs=30.4
Q ss_pred CCCcEEEECCCCCccchHHHHHHHHHHhC----CcEEecCCC
Q 038651 87 AVKPAMIGGPKLSVSKATIAFVELADACG----YAFAVMPSA 124 (324)
Q Consensus 87 AkrPvIl~G~g~~~~~a~~~l~~lae~l~----~Pv~tt~~g 124 (324)
.+..+|++|+|.++..+.+.+.+|++++. .||.+.++.
T Consensus 5 ~~~aiLLvgHGSRdp~~~~~~~~La~~l~~~~~~~V~~aFLE 46 (335)
T PRK05782 5 SNTAIILIGHGSRRETFNSDMEGMANYLKEKLGVPIYLTYNE 46 (335)
T ss_pred CCceEEEEecCCCChHHHHHHHHHHHHHHhccCCceEEEEec
Confidence 46789999999999999999999998884 466665543
No 329
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=27.84 E-value=1.9e+02 Score=29.71 Aligned_cols=85 Identities=8% Similarity=0.052 Sum_probs=44.6
Q ss_pred EEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCch--hhhhh-hhC----C---CCCCC--CCCCHHHHHHHHHHHH
Q 038651 212 VIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNY--TIEVE-IHD----G---PYNVI--ENWNYTGLVEAFQNAI 279 (324)
Q Consensus 212 vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~y--g~~~~-~~~----~---~~~~l--~~~df~~lA~a~G~al 279 (324)
+++-.|-+...+ +.-|.+|...++|+++|...-... +..+. +|+ . +++.. .-.+-..+.+.+--|+
T Consensus 76 ~~~t~GPG~~N~--l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~~~q~~d~~~~~~~~tk~s~~v~~~~~~~~~i~~A~ 153 (569)
T PRK09259 76 CLTVSAPGFLNG--LTALANATTNCFPMIMISGSSEREIVDLQQGDYEELDQLNAAKPFCKAAFRVNRAEDIGIGVARAI 153 (569)
T ss_pred EEEcCCccHHHH--HHHHHHHHhcCCCEEEEEccCCcccccccCCCccccchhhhhhhheeeeEEcCCHHHHHHHHHHHH
Confidence 334445554433 256999999999999998754321 11110 110 0 00000 0012234444333366
Q ss_pred HHhHHhCCCCeEEEEEEecC
Q 038651 280 ETAAVEKKDCLCFIEAIVHK 299 (324)
Q Consensus 280 ~~a~~~~~~~p~lIeV~id~ 299 (324)
+.|. ....||+.||+..|-
T Consensus 154 ~~A~-~~~~GPV~l~iP~Dv 172 (569)
T PRK09259 154 RTAV-SGRPGGVYLDLPAKV 172 (569)
T ss_pred HHhh-hCCCCcEEEEeCHHH
Confidence 6664 345789999999763
No 330
>PRK08506 replicative DNA helicase; Provisional
Probab=27.70 E-value=77 Score=31.92 Aligned_cols=35 Identities=20% Similarity=0.169 Sum_probs=26.9
Q ss_pred HHHHHHHHHhCCcEEe-cCCCCCc------------------cccCCcEEEEEc
Q 038651 105 IAFVELADACGYAFAV-MPSAKGM------------------IVEFADAYIFVE 139 (324)
Q Consensus 105 ~~l~~lae~l~~Pv~t-t~~gkg~------------------~l~~aDlvl~lG 139 (324)
..|..||..+++||+. +...|++ +=++||+|+.+=
T Consensus 332 r~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLreSg~IeqdAD~vl~l~ 385 (472)
T PRK08506 332 RGLKLLARELDIPIIALSQLNRSLESRADKRPMLSDLRESGAIEQDADIILFVY 385 (472)
T ss_pred HHHHHHHHHhCCcEEEEeecCcchhhccCCCCChHHhhcchhhhhcCCEEEEEe
Confidence 4788999999999995 4544443 557999999874
No 331
>PRK07586 hypothetical protein; Validated
Probab=27.69 E-value=1.8e+02 Score=29.25 Aligned_cols=65 Identities=6% Similarity=0.030 Sum_probs=38.5
Q ss_pred HHHHHHHHhCCCeEEEEEeCCchhhhhhhhCCCCCCCCCCCHHH-----------------HHHHHHHHHHHhHHhCCCC
Q 038651 227 VDVSTMLRCEQKNIIFLINNGNYTIEVEIHDGPYNVIENWNYTG-----------------LVEAFQNAIETAAVEKKDC 289 (324)
Q Consensus 227 qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~~~~~~l~~~df~~-----------------lA~a~G~al~~a~~~~~~~ 289 (324)
.-|.+|...+.|++++.-.-......+.. +...|... +.+.+--|++.|. ....|
T Consensus 81 ~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~-------~q~~d~~~~~~~vtk~~~~v~~~~~~~~~i~~A~~~a~-~~~~G 152 (514)
T PRK07586 81 ANLHNARRARTPIVNIVGDHATYHRKYDA-------PLTSDIEALARPVSGWVRRSESAADVAADAAAAVAAAR-GAPGQ 152 (514)
T ss_pred HHHHHHHhcCCCEEEEecCCchhccCCCc-------ccccchhhhhccccceeeecCCHHHHHHHHHHHHHHHh-cCCCC
Confidence 56889999999999998764433221110 11123333 3333222555553 23579
Q ss_pred eEEEEEEecC
Q 038651 290 LCFIEAIVHK 299 (324)
Q Consensus 290 p~lIeV~id~ 299 (324)
|+.||+..|-
T Consensus 153 PV~l~iP~Dv 162 (514)
T PRK07586 153 VATLILPADV 162 (514)
T ss_pred cEEEEeccch
Confidence 9999999874
No 332
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=27.33 E-value=1.8e+02 Score=29.93 Aligned_cols=78 Identities=14% Similarity=0.071 Sum_probs=43.5
Q ss_pred EEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhhCCCCCCCCCCCHHHHHHHHHH--------------
Q 038651 212 VIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIHDGPYNVIENWNYTGLVEAFQN-------------- 277 (324)
Q Consensus 212 vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~~~~~~l~~~df~~lA~a~G~-------------- 277 (324)
+++-.|-+...+ +.-+.+|.+.+.|+++|.-.=......+ . .+...|...+++.+-.
T Consensus 67 ~~~t~GPG~~n~--l~~i~~A~~~~~Pvl~I~G~~~~~~~~~----~---~~q~~d~~~l~~~~tk~s~~v~~~~~i~~~ 137 (586)
T PRK06276 67 CVATSGPGATNL--VTGIATAYADSSPVIALTGQVPTKLIGN----D---AFQEIDALGIFMPITKHNFQIKKPEEIPEI 137 (586)
T ss_pred EEECCCccHHHH--HHHHHHHHhcCCCEEEEeCCCCccccCC----C---CCccccHhhHHhhhcceEEecCCHHHHHHH
Confidence 344445554433 3669999999999999985333221111 0 1112334444443322
Q ss_pred ---HHHHhHHhCCCCeEEEEEEecC
Q 038651 278 ---AIETAAVEKKDCLCFIEAIVHK 299 (324)
Q Consensus 278 ---al~~a~~~~~~~p~lIeV~id~ 299 (324)
|++.|. ....||+.|+|..|-
T Consensus 138 i~~A~~~A~-~~~~GPV~l~iP~Dv 161 (586)
T PRK06276 138 FRAAFEIAK-TGRPGPVHIDLPKDV 161 (586)
T ss_pred HHHHHHHhc-CCCCCcEEEEcChhH
Confidence 555553 234689999999763
No 333
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=27.33 E-value=1.7e+02 Score=26.02 Aligned_cols=56 Identities=18% Similarity=-0.031 Sum_probs=35.5
Q ss_pred EeecCchHHHHHHHHHHhhhcC----ceEEEEeCCcchHHHHHHHHHHhhc---CCcchhhhh
Q 038651 28 DVGCCNELNAGYAADGSARARA----VGAYVVTFIVGRLSIINAIAGAYSE---NFPAATITA 83 (324)
Q Consensus 28 ~i~~rhE~~A~~aAdgYaR~tg----~gv~~~t~GpG~~N~~tgla~A~~d---~~Pvl~It~ 83 (324)
||......-|-.++..-+.-.+ +=.+..-+|.|=|+++.++++++.. ...++.+++
T Consensus 10 fv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~ 72 (219)
T PF00308_consen 10 FVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSA 72 (219)
T ss_dssp S--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEH
T ss_pred CCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecH
Confidence 4444444455566666666544 2244577888999999999999876 455777653
No 334
>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G. This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.
Probab=26.93 E-value=98 Score=32.09 Aligned_cols=85 Identities=16% Similarity=0.137 Sum_probs=49.1
Q ss_pred hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCC-------C-------Cc---cccCCcEEEEEcCccCCcc
Q 038651 84 LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSA-------K-------GM---IVEFADAYIFVESIFNDYS 146 (324)
Q Consensus 84 L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~g-------k-------g~---~l~~aDlvl~lG~~~~~~~ 146 (324)
|++.++..++.|+.... .....+.+|++.+|.+-+..... . |. -+++||+||++|+.+.+..
T Consensus 299 L~~i~~va~~~~~~~~~-e~~~~~~~~~~~lGt~~~~~~~~~~~~~~~~~~~~~~~g~~~~di~~ad~il~~G~N~~~s~ 377 (603)
T TIGR01973 299 LKASSRIGGIAGPRSSL-EELFALKKLVRKLGSENFDLRIRNYEFESADLRANYLFNTTLADIEEADLVLLVGADLRQEA 377 (603)
T ss_pred HhccCcEEEEeCCCCCH-HHHHHHHHHHHHhCCCcccccccccccccchhhcccccCCCHHHHHhCCEEEEEccCchhhh
Confidence 55555666666654432 33346788899888764321110 0 11 4578999999999986543
Q ss_pred ccccccc----CCC-C-EEEEcCCccccc
Q 038651 147 SVGYSLL----LNK-K-AILMQPDRIVVA 169 (324)
Q Consensus 147 t~~~~~~----~~~-~-iI~id~d~~~i~ 169 (324)
...+... ... . +|.||+...+..
T Consensus 378 p~~~~~i~~a~~~ggaklividpr~s~ta 406 (603)
T TIGR01973 378 PLLNLRLRKAVKKGGAKVALIGIEKWNLT 406 (603)
T ss_pred HHHHHHHHHHHhcCCcEEEEECCccccch
Confidence 2222111 122 3 999998766554
No 335
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=26.75 E-value=1.8e+02 Score=30.08 Aligned_cols=62 Identities=15% Similarity=0.097 Sum_probs=41.2
Q ss_pred EEEEeCCcchHHHHHHHHHHhhcCCcchhhhhhhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCC
Q 038651 52 AYVVTFIVGRLSIINAIAGAYSENFPAATITALLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPS 123 (324)
Q Consensus 52 v~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~ 123 (324)
+++.-+|.|=|-++..|+..+... ...+.+.++.....+.++.+++..+++.+++|+.....
T Consensus 354 aLVGPtGvGKTTtaakLAa~la~~----------~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d 415 (559)
T PRK12727 354 ALVGPTGAGKTTTIAKLAQRFAAQ----------HAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADS 415 (559)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHh----------cCCCceEEEecccccccHHHHHHHhhcccCceeEecCc
Confidence 334557888888888888765432 22234555554455667788999999999999876543
No 336
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=26.74 E-value=1.2e+02 Score=23.67 Aligned_cols=56 Identities=16% Similarity=-0.038 Sum_probs=36.5
Q ss_pred hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc-----cccCCcEEEEEcCc
Q 038651 84 LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM-----IVEFADAYIFVESI 141 (324)
Q Consensus 84 L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~-----~l~~aDlvl~lG~~ 141 (324)
|.+++ .+++.|.|... ....++....++++.++......... .+.+-|++|++-.+
T Consensus 10 i~~~~-~i~i~g~g~s~-~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iS~~ 70 (139)
T cd05013 10 LAKAR-RIYIFGVGSSG-LVAEYLAYKLLRLGKPVVLLSDPHLQLMSAANLTPGDVVIAISFS 70 (139)
T ss_pred HHhCC-EEEEEEcCchH-HHHHHHHHHHHHcCCceEEecCHHHHHHHHHcCCCCCEEEEEeCC
Confidence 45564 48889998754 46667777778888887765443332 34566777777543
No 337
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=26.67 E-value=1.6e+02 Score=30.56 Aligned_cols=78 Identities=10% Similarity=0.085 Sum_probs=44.2
Q ss_pred EEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhhCCCCCCCCCCCHHHH-----------------HHH
Q 038651 212 VIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIHDGPYNVIENWNYTGL-----------------VEA 274 (324)
Q Consensus 212 vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~~~~~~l~~~df~~l-----------------A~a 274 (324)
+++-.|-+...+ +.-|.+|.+.+.|++++.-.-......+. . +...|-..+ .+.
T Consensus 78 ~~~t~GPG~~N~--l~gia~A~~~~~Pvl~i~G~~~~~~~~~~----~---~q~~d~~~l~~~vtk~~~~v~~~~~i~~~ 148 (595)
T PRK09107 78 VLVTSGPGATNA--VTPLQDALMDSIPLVCITGQVPTHLIGSD----A---FQECDTVGITRPCTKHNWLVKDVNDLARV 148 (595)
T ss_pred EEECCCccHhHH--HHHHHHHhhcCCCEEEEEcCCChhhcCCC----C---CcccchhhhhhhheEEEEEeCCHHHHHHH
Confidence 334445554433 25699999999999999876554432111 0 111222222 322
Q ss_pred HHHHHHHhHHhCCCCeEEEEEEecC
Q 038651 275 FQNAIETAAVEKKDCLCFIEAIVHK 299 (324)
Q Consensus 275 ~G~al~~a~~~~~~~p~lIeV~id~ 299 (324)
+--|++.|. ....||+.|||..|-
T Consensus 149 l~~A~~~A~-s~~~GPV~l~iP~Dv 172 (595)
T PRK09107 149 IHEAFHVAT-SGRPGPVVVDIPKDV 172 (595)
T ss_pred HHHHHHHhc-CCCCceEEEecCCCh
Confidence 222555553 234689999999874
No 338
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=26.57 E-value=76 Score=25.42 Aligned_cols=36 Identities=11% Similarity=0.065 Sum_probs=25.8
Q ss_pred CCcEEEECCCCCccchHHHHHHHHHHhC-----CcEEecCC
Q 038651 88 VKPAMIGGPKLSVSKATIAFVELADACG-----YAFAVMPS 123 (324)
Q Consensus 88 krPvIl~G~g~~~~~a~~~l~~lae~l~-----~Pv~tt~~ 123 (324)
+.-+|++|.|.+..++.+.+.+|++.+. .+|.+.++
T Consensus 1 ~~~lvlv~hGS~~~~~~~~~~~~~~~l~~~~~~~~v~~afl 41 (126)
T PRK00923 1 MLGLLLVGHGSRLPYNKEVVTKIAEKIKEKHPFYIVEVGFM 41 (126)
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHhCCCCeEEEEEE
Confidence 3568999999987777788888887753 35655444
No 339
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=26.54 E-value=3.2e+02 Score=23.86 Aligned_cols=95 Identities=13% Similarity=0.053 Sum_probs=60.7
Q ss_pred hhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhh-------hhhcCCCcEEEECCCCCccchHHHHHHHHHHhCC
Q 038651 45 ARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATIT-------ALLKAVKPAMIGGPKLSVSKATIAFVELADACGY 116 (324)
Q Consensus 45 aR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It-------~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~ 116 (324)
||+-| -+..++|.=++.-.++.=+.+=|...-=+=+.. -++..-+++.+...|+...+..+++++..+. +-
T Consensus 26 ARafGa~~~yiv~~~~~q~~~v~~I~~~WGg~fnv~~~~s~~~~i~~~k~~G~vvhLtmyga~~~~~~~~ir~~~~~-~~ 104 (176)
T PRK03958 26 ARALGADKIILASNDEHVKESVEDIVERWGGPFEVEVTKSWKKEIREWKDGGIVVHLTMYGENIQDVEPEIREAHRK-GE 104 (176)
T ss_pred HHHcCCceEEEecCcHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHHHHhCCcEEEEEEecCCccchHHHHHHhhcc-CC
Confidence 55568 688888888888888888888882221111111 1333345666666777666677777766655 66
Q ss_pred cEEecCCCCCc---cccCCcEEEEEcC
Q 038651 117 AFAVMPSAKGM---IVEFADAYIFVES 140 (324)
Q Consensus 117 Pv~tt~~gkg~---~l~~aDlvl~lG~ 140 (324)
|++--.-|.|+ +++.||.+|.+|.
T Consensus 105 p~LIvvGg~gvp~evye~aDynlgvg~ 131 (176)
T PRK03958 105 PLLIVVGAEKVPREVYELADWNVAVGN 131 (176)
T ss_pred cEEEEEcCCCCCHHHHhhCCEEeccCC
Confidence 77665556666 7778888775553
No 340
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=26.45 E-value=1.5e+02 Score=28.09 Aligned_cols=41 Identities=15% Similarity=0.254 Sum_probs=27.5
Q ss_pred CCCcEEEECCCCCc---------cc------hH--HHHHHHHHHhCCcEEecCCCCCc
Q 038651 87 AVKPAMIGGPKLSV---------SK------AT--IAFVELADACGYAFAVMPSAKGM 127 (324)
Q Consensus 87 AkrPvIl~G~g~~~---------~~------a~--~~l~~lae~l~~Pv~tt~~gkg~ 127 (324)
-.+||+++|..-.+ .+ -. -.+.++||++|.|++|-..-.|.
T Consensus 105 ~G~pv~vIG~qKG~dtk~~~~rNFGm~~PeGyRKAlRlm~~AekF~lPiitfIDT~GA 162 (317)
T COG0825 105 GGQPVVVIGHQKGRDTKEKLKRNFGMPRPEGYRKALRLMKLAEKFGLPIITFIDTPGA 162 (317)
T ss_pred CCeeEEEEeeecCccchhHHHhcCCCCCchHHHHHHHHHHHHHHhCCCEEEEecCCCC
Confidence 45888888864322 11 12 25678999999999986655555
No 341
>PRK09165 replicative DNA helicase; Provisional
Probab=26.42 E-value=84 Score=31.89 Aligned_cols=35 Identities=23% Similarity=0.242 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhCCcEEe-cCCCCCc------------------cccCCcEEEEE
Q 038651 104 TIAFVELADACGYAFAV-MPSAKGM------------------IVEFADAYIFV 138 (324)
Q Consensus 104 ~~~l~~lae~l~~Pv~t-t~~gkg~------------------~l~~aDlvl~l 138 (324)
...|..||..+++||+. +.+.|++ +=++||+|+.+
T Consensus 372 s~~LK~lAkel~ipVi~lsQLnR~~e~r~~krP~lsDLr~Sg~IEqdAD~v~~l 425 (497)
T PRK09165 372 TQGLKALAKELNIPVIALSQLSRQVEQRDDKRPQLSDLRESGSIEQDADVVMFV 425 (497)
T ss_pred HHHHHHHHHHhCCeEEEeecccchhhccCCCCCchhhhhhccchhccCCEEEEE
Confidence 46789999999999996 5555554 55799999988
No 342
>COG1445 FrwB Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=26.03 E-value=1.1e+02 Score=25.14 Aligned_cols=39 Identities=26% Similarity=0.246 Sum_probs=30.5
Q ss_pred cchHHHHHHHHHHhCCcEEe-cCCCCCc-------cccCCcEEEEEc
Q 038651 101 SKATIAFVELADACGYAFAV-MPSAKGM-------IVEFADAYIFVE 139 (324)
Q Consensus 101 ~~a~~~l~~lae~l~~Pv~t-t~~gkg~-------~l~~aDlvl~lG 139 (324)
+=+.+.|.+.|.++|.-|=. |.-+.|+ -+++||+||+.=
T Consensus 18 yMAAeaLe~~A~~~g~~IKVETqGs~G~eN~LT~edI~~Ad~VI~Aa 64 (122)
T COG1445 18 YMAAEALEKAAKKLGVEIKVETQGAVGIENRLTAEDIAAADVVILAA 64 (122)
T ss_pred HHHHHHHHHHHHHcCCeEEEEcCCcccccCcCCHHHHHhCCEEEEEe
Confidence 34678999999999999864 5555677 678999888764
No 343
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=25.92 E-value=1.6e+02 Score=30.17 Aligned_cols=34 Identities=12% Similarity=0.041 Sum_probs=23.9
Q ss_pred EEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCC
Q 038651 212 VIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNG 247 (324)
Q Consensus 212 vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~ 247 (324)
+++-.|-+.... +.-|.+|.+.+.|+++|.-.-.
T Consensus 71 ~~vt~GPG~~N~--l~gl~~A~~~~~Pvl~i~G~~~ 104 (574)
T PRK06466 71 VLVTSGPGATNA--ITGIATAYMDSIPMVVLSGQVP 104 (574)
T ss_pred EEECCCccHHHH--HHHHHHHHhcCCCEEEEecCCC
Confidence 444456555433 3569999999999999987544
No 344
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=25.69 E-value=2.9e+02 Score=28.84 Aligned_cols=84 Identities=17% Similarity=0.155 Sum_probs=52.4
Q ss_pred CCeEEEecCchHHhhhHH-HHHHHHHHhCCCeEEEEEeCCchhhhhhh---h-----CCC-----CCC--CCCCCHHHHH
Q 038651 209 NTAVIAETGDSWFNCQKD-VDVSTMLRCEQKNIIFLINNGNYTIEVEI---H-----DGP-----YNV--IENWNYTGLV 272 (324)
Q Consensus 209 ~~~vv~d~G~~~~~~~~~-qEL~Ta~r~~lpviivV~NN~~yg~~~~~---~-----~~~-----~~~--l~~~df~~lA 272 (324)
+..|+|..||+...-... .-++-|-.++|.-+|++++|+..++--.. + ..+ ++. ..+=|...+.
T Consensus 141 ~~rv~~vlGDG~~~eG~~~EA~s~Ag~l~ldnLVai~D~n~is~~g~t~~~~~~dV~~~r~ea~g~~~~~V~~~d~d~i~ 220 (632)
T KOG0523|consen 141 SNRVYCVLGDGCLTEGSVWEAMSLAGHLKLDNLVAIYDNNKISIDGATSLGFDEDVYQLRFEAFGWNVIIVDGGDVDEIR 220 (632)
T ss_pred cceEEEEEcCchhccchHHHHHhhhhhcccCCEEEEEccccccCCCCCcccccccHHHHHHHHhCceEEEEcCcCHHHHH
Confidence 778889999988644333 55778889999999999999987653211 0 001 110 1223555555
Q ss_pred HHHHHHHHHhHHhCCCCeEEEEEEe
Q 038651 273 EAFQNAIETAAVEKKDCLCFIEAIV 297 (324)
Q Consensus 273 ~a~G~al~~a~~~~~~~p~lIeV~i 297 (324)
++|+ +|+ ...++|+.|-..+
T Consensus 221 ka~~----~a~-~~k~kpt~i~~~t 240 (632)
T KOG0523|consen 221 KAIG----KAK-SVKGKPTAIKATT 240 (632)
T ss_pred HHHh----hhh-hccCCceeeeeee
Confidence 5554 343 2467888886665
No 345
>cd02768 MopB_NADH-Q-OR-NuoG2 MopB_NADH-Q-OR-NuoG2: The NuoG/Nad11/75-kDa subunit (second domain) of the NADH-quinone oxidoreductase (NADH-Q-OR)/respiratory complex I/NADH dehydrogenase-1 (NDH-1). The NADH-Q-OR is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The atomic structure of complex I is not known and the mechanisms of electron transfer and proton pumping are not established. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Escherichia coli, this subunit is encoded by the nuoG gene, and is part of the 14 distinct subunits constituting the 'minimal' fun
Probab=25.61 E-value=1.2e+02 Score=29.19 Aligned_cols=78 Identities=17% Similarity=0.148 Sum_probs=44.2
Q ss_pred CcEEEECCCCCccchHHHHHHHHHHhCCcEEecCC------------CCC---c---cccCCcEEEEEcCccCCcccccc
Q 038651 89 KPAMIGGPKLSVSKATIAFVELADACGYAFAVMPS------------AKG---M---IVEFADAYIFVESIFNDYSSVGY 150 (324)
Q Consensus 89 rPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~------------gkg---~---~l~~aDlvl~lG~~~~~~~t~~~ 150 (324)
+..++.|+.... .....+.+|++.+|.|.+.... +.+ . -+++||+||++|+.+.+.....+
T Consensus 89 ~i~~~~~~~~~~-e~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad~il~~G~n~~~~~p~~~ 167 (386)
T cd02768 89 KIGGIAGPRADL-ESLFLLKKLLNKLGSNNIDHRLRQSDLPADNRLRGNYLFNTSIAEIEEADAVLLIGSNLRKEAPLLN 167 (386)
T ss_pred heEEEecCCCCH-HHHHHHHHHHHHhCCCCchhhhccccCccccccccCcccCCCHHHHhhCCEEEEEcCCcchhchHHH
Confidence 556665554432 3335678888888877542211 001 1 45799999999998754322111
Q ss_pred ccc----CC-CC-EEEEcCCccc
Q 038651 151 SLL----LN-KK-AILMQPDRIV 167 (324)
Q Consensus 151 ~~~----~~-~~-iI~id~d~~~ 167 (324)
... .. +. +|.||+...+
T Consensus 168 ~~~~~a~~~~g~kli~idp~~t~ 190 (386)
T cd02768 168 ARLRKAVKKKGAKIAVIGPKDTD 190 (386)
T ss_pred HHHHHHHHcCCCeEEEECCCccc
Confidence 111 12 33 9999987643
No 346
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=25.54 E-value=1.7e+02 Score=30.19 Aligned_cols=83 Identities=13% Similarity=0.082 Sum_probs=44.0
Q ss_pred EEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhh-hhC-------CCCCC----CCCCCHHHHHHHHHHHH
Q 038651 212 VIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVE-IHD-------GPYNV----IENWNYTGLVEAFQNAI 279 (324)
Q Consensus 212 vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~-~~~-------~~~~~----l~~~df~~lA~a~G~al 279 (324)
+++-.|-+...+ +.-|.+|.+.+.|+++|.-.-......+. +|+ .+++. +. +=..+.+.+--|+
T Consensus 81 ~~~t~GpG~~N~--~~gla~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~itk~~~~v~--~~~~i~~~l~~A~ 156 (570)
T PRK06725 81 VFATSGPGATNL--VTGLADAYMDSIPLVVITGQVATPLIGKDGFQEADVVGITVPVTKHNYQVR--DVNQLSRIVQEAF 156 (570)
T ss_pred EEECCCccHHHH--HHHHHHHhhcCcCEEEEecCCCcccccCCCCcccchhhhhhccceeEEEcC--CHHHHHHHHHHHH
Confidence 334445554433 35699999999999999875443322111 111 00110 11 1122333322255
Q ss_pred HHhHHhCCCCeEEEEEEecC
Q 038651 280 ETAAVEKKDCLCFIEAIVHK 299 (324)
Q Consensus 280 ~~a~~~~~~~p~lIeV~id~ 299 (324)
+.|. ....||+.||+..|-
T Consensus 157 ~~A~-s~~~GPV~l~iP~Dv 175 (570)
T PRK06725 157 YIAE-SGRPGPVLIDIPKDV 175 (570)
T ss_pred HHHh-cCCCCcEEEccccch
Confidence 5553 345699999999774
No 347
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=25.48 E-value=1.4e+02 Score=28.47 Aligned_cols=55 Identities=13% Similarity=0.134 Sum_probs=36.0
Q ss_pred cCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEe-cCC-C---CCc--------cc-----cCCcEEEEEcCc
Q 038651 86 KAVKPAMIGGPKLSVSKATIAFVELADACGYAFAV-MPS-A---KGM--------IV-----EFADAYIFVESI 141 (324)
Q Consensus 86 ~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~t-t~~-g---kg~--------~l-----~~aDlvl~lG~~ 141 (324)
..+|++|+.|.++.. ...+.+.+..+..|+.+-. ... + |.. .+ ...|+||+||..
T Consensus 23 ~~~~~livtd~~~~~-~~~~~l~~~L~~~g~~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIaiGGG 95 (345)
T cd08195 23 KGSKILIVTDENVAP-LYLEKLKAALEAAGFEVEVIVIPAGEASKSLETLEKLYDALLEAGLDRKSLIIALGGG 95 (345)
T ss_pred CCCeEEEEECCchHH-HHHHHHHHHHHhcCCceEEEEeCCCCCcCCHHHHHHHHHHHHHcCCCCCCeEEEECCh
Confidence 357899999988865 5777888888777755432 222 1 222 11 234999999975
No 348
>PRK03972 ribosomal biogenesis protein; Validated
Probab=25.44 E-value=1.7e+02 Score=26.32 Aligned_cols=57 Identities=16% Similarity=0.028 Sum_probs=37.0
Q ss_pred CCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc-cc---cCCcEEEEEcCccCCc
Q 038651 88 VKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM-IV---EFADAYIFVESIFNDY 145 (324)
Q Consensus 88 krPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~-~l---~~aDlvl~lG~~~~~~ 145 (324)
..|.|+.-+.-.+.+..+...++|+.+|+|++.- ..+++ .+ ..+|.+|++|...-.+
T Consensus 104 ~~p~iItts~kt~~g~~~~Ak~lA~eLgi~yV~R-~k~Sl~~L~~~~~~d~vLVV~~~~~~~ 164 (208)
T PRK03972 104 DMPLVITTAKRVGLDHMAFAQVFAELTGGKFVPR-GGKSLQDIADKYNTDVLGVIERHPRGM 164 (208)
T ss_pred cccEEEEcCCCCCHHHHHHHHHHHHHhCCceeCc-CCcCHHHHHhhhcCceEEEEecCCCce
Confidence 4676554333333456678899999999999863 22333 33 4569999888766444
No 349
>cd02773 MopB_Res-Cmplx1_Nad11 MopB_Res_Cmplx1_Nad11: The second domain of the Nad11/75-kDa subunit of the NADH-quinone oxidoreductase/respiratory complex I/NADH dehydrogenase-1(NDH-1) of eukaryotes and the Nqo3/G subunit of alphaproteobacteria NDH-1. The NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chains of many prokaryotes and eukaryotes. Mitochondrial complex I and its bacterial counterpart, NDH-1, function as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75 kDa) subunit of the mitochondrial NADH:ubiquinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. In Paracoccus denitrificans, this subunit is encoded by the nqo3 gene, and is part of the 14 distinct subunits constituting the 'minimal' functional enzyme. The Nad11/Nqo3 subunit is made
Probab=25.14 E-value=1.3e+02 Score=28.99 Aligned_cols=54 Identities=17% Similarity=0.034 Sum_probs=0.0
Q ss_pred EEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc----------------cccCCcEEEEEcCccCC
Q 038651 91 AMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM----------------IVEFADAYIFVESIFND 144 (324)
Q Consensus 91 vIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~----------------~l~~aDlvl~lG~~~~~ 144 (324)
+.+.+++....+....+.+|++.+|.+-+.+...-.. -+++||+||++|+.+.+
T Consensus 89 i~~~~g~~~~~e~~~~~~~~~~~~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~di~~ad~il~~G~N~~~ 158 (375)
T cd02773 89 IAAIAGDLADVESMVALKDLLNKLGSENLACEQDGPDLPADLRSNYLFNTTIAGIEEADAVLLVGTNPRF 158 (375)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhCCCcccccccccccccccccccccCCCHHHHhhCCEEEEEcCCcch
No 350
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=25.06 E-value=87 Score=27.61 Aligned_cols=53 Identities=17% Similarity=0.201 Sum_probs=33.2
Q ss_pred CcEEEECCC-C-Ccc---chHHHHHHHHH-HhCCcEEecCCCCCc---cccCCcEEEEEcCc
Q 038651 89 KPAMIGGPK-L-SVS---KATIAFVELAD-ACGYAFAVMPSAKGM---IVEFADAYIFVESI 141 (324)
Q Consensus 89 rPvIl~G~g-~-~~~---~a~~~l~~lae-~l~~Pv~tt~~gkg~---~l~~aDlvl~lG~~ 141 (324)
|-||+.|.. - ... .+.+.+.++.+ ..++-|..+...... .|+++|+||...+.
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~~~~~~v~~~~~~~~~~~~~L~~~Dvvv~~~~~ 62 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEESEGFEVTVTEDPDDLTPENLKGYDVVVFYNTG 62 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHHTTCEEEEECCSGGCTSHHCHCT-SEEEEE-SS
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhccCCCEEEEEEeCcccCChhHhcCCCEEEEECCC
Confidence 346666662 1 211 46677888888 667777666554444 78999999999877
No 351
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=25.00 E-value=1.3e+02 Score=30.95 Aligned_cols=85 Identities=11% Similarity=0.119 Sum_probs=46.6
Q ss_pred EEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhh-hhC----CCCCCCCCC-----CHHHHHHHHHHHHHH
Q 038651 212 VIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVE-IHD----GPYNVIENW-----NYTGLVEAFQNAIET 281 (324)
Q Consensus 212 vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~-~~~----~~~~~l~~~-----df~~lA~a~G~al~~ 281 (324)
+++-.|-+...+ +.-|.+|...++|+++|.-.-..+..-+. +|+ .-+..+..| +=..+.+.+--|++.
T Consensus 77 ~~~t~GPG~~n~--~~gla~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~itk~s~~v~~~~~~~~~l~~A~~~ 154 (566)
T PRK07282 77 AVVTSGPGATNA--ITGIADAMSDSVPLLVFTGQVARAGIGKDAFQEADIVGITMPITKYNYQIRETADIPRIITEAVHI 154 (566)
T ss_pred EEECCCccHHHH--HHHHHHHhhcCCCEEEEecccccccCCCCCccccChhchhcCCCceeEEcCCHHHHHHHHHHHHHH
Confidence 444456555433 25699999999999999877555433221 121 111111111 112333333335665
Q ss_pred hHHhCCCCeEEEEEEecC
Q 038651 282 AAVEKKDCLCFIEAIVHK 299 (324)
Q Consensus 282 a~~~~~~~p~lIeV~id~ 299 (324)
|. ....||+.|||..|-
T Consensus 155 A~-~~~~GPV~l~iP~Dv 171 (566)
T PRK07282 155 AT-TGRPGPVVIDLPKDV 171 (566)
T ss_pred Hh-cCCCCeEEEeCChhh
Confidence 54 234699999998874
No 352
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=24.78 E-value=1.4e+02 Score=26.55 Aligned_cols=14 Identities=21% Similarity=0.145 Sum_probs=6.9
Q ss_pred cccCCcEEEEEcCc
Q 038651 128 IVEFADAYIFVESI 141 (324)
Q Consensus 128 ~l~~aDlvl~lG~~ 141 (324)
.+.+||+|++-|-+
T Consensus 80 ~l~~ad~I~~~GG~ 93 (217)
T cd03145 80 RLRDADGIFFTGGD 93 (217)
T ss_pred HHHhCCEEEEeCCc
Confidence 44455555555543
No 353
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=24.69 E-value=1.9e+02 Score=24.50 Aligned_cols=55 Identities=20% Similarity=0.141 Sum_probs=31.4
Q ss_pred hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCccccCCcEEEEEcC
Q 038651 84 LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGMIVEFADAYIFVES 140 (324)
Q Consensus 84 L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~~l~~aDlvl~lG~ 140 (324)
|.+|+| +.+.|.|....-+. .+...-.++|.++..........+.+-|++|++..
T Consensus 30 i~~a~~-I~i~G~G~S~~~A~-~~~~~l~~~g~~~~~~~~~~~~~~~~~D~vI~iS~ 84 (179)
T cd05005 30 ILNAKR-IFVYGAGRSGLVAK-AFAMRLMHLGLNVYVVGETTTPAIGPGDLLIAISG 84 (179)
T ss_pred HHhCCe-EEEEecChhHHHHH-HHHHHHHhCCCeEEEeCCCCCCCCCCCCEEEEEcC
Confidence 677865 78888887543333 33333345688887642211114556677777753
No 354
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=24.68 E-value=2.2e+02 Score=26.48 Aligned_cols=73 Identities=18% Similarity=0.101 Sum_probs=0.0
Q ss_pred ceEEEEeCCcch---HHHHHHHHHHhhc--------CCcchhhhh---------------hhcCCCcEEEECCCCCccch
Q 038651 50 VGAYVVTFIVGR---LSIINAIAGAYSE--------NFPAATITA---------------LLKAVKPAMIGGPKLSVSKA 103 (324)
Q Consensus 50 ~gv~~~t~GpG~---~N~~tgla~A~~d--------~~Pvl~It~---------------L~~AkrPvIl~G~g~~~~~a 103 (324)
+|++.-.+||.+ .....|+.-|..+ +.|+-++.. |...++..+++|... +..
T Consensus 2 IG~~~~lsG~~a~~G~~~~~g~~~A~~~iN~~ggi~g~~v~l~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~~--s~~ 79 (344)
T cd06345 2 IGVLAPLSGGASTTGEAMWNGAELAAEEINAAGGILGRKVELVFEDTEGSPEDAVRAFERLVSQDKVDAVVGGYS--SEV 79 (344)
T ss_pred eeEEEecCCcccccCHHHHHHHHHHHHHHHHcCCCCCceEEEEEecCCCCHHHHHHHHHHHhccCCceEEECCcc--hHH
Q ss_pred HHHHHHHHHHhCCcEEecCCC
Q 038651 104 TIAFVELADACGYAFAVMPSA 124 (324)
Q Consensus 104 ~~~l~~lae~l~~Pv~tt~~g 124 (324)
...+.+++++.++|+++...+
T Consensus 80 ~~a~~~~~~~~~vp~i~~~~~ 100 (344)
T cd06345 80 VLALQDVAAENKVPFIVTGAA 100 (344)
T ss_pred HHHHHHHHHHcCCcEEeccCC
No 355
>cd02774 MopB_Res-Cmplx1_Nad11-M MopB_Res_Cmplx1_Nad11_M: Mitochondrial-encoded NADH-quinone oxidoreductase/respiratory complex I, the second domain of the Nad11/75-kDa subunit of some protists. NADH-quinone oxidoreductase is the first energy-transducting complex in the respiratory chain and functions as a redox pump that uses the redox energy to translocate H+ ions across the membrane, resulting in a significant contribution to energy production. The nad11 gene codes for the largest (75-kDa) subunit of the mitochondrial NADH-quinone oxidoreductase, it constitutes the electron input part of the enzyme, or the so-called NADH dehydrogenase fragment. The Nad11 subunit is made of two domains: the first contains three binding sites for FeS clusters (the fer2 domain), the second domain (this CD), is of unknown function or, as postulated, has lost an ancestral formate dehydrogenase activity that became redundant during the evolution of the complex I enzyme. Although only vestigial sequence evi
Probab=24.66 E-value=1.4e+02 Score=28.96 Aligned_cols=77 Identities=13% Similarity=0.058 Sum_probs=46.6
Q ss_pred CCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCC----------Cc--------cccCCcEEEEEcCccCCccccc
Q 038651 88 VKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAK----------GM--------IVEFADAYIFVESIFNDYSSVG 149 (324)
Q Consensus 88 krPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gk----------g~--------~l~~aDlvl~lG~~~~~~~t~~ 149 (324)
++-.+++|..+. .+..-.+.+|++.+|...+.+-... +. -+++||+||++|+.+.+-.+--
T Consensus 88 ~~i~~i~g~~~t-~E~~~~lkkl~~~lgs~n~d~~~~~~~~~~~~~~~~~~~~~~sl~die~ad~illiG~n~~~e~Pvl 166 (366)
T cd02774 88 SKLNFIIGSKID-LETLFYYKKLLNKLGSLNTNSNNFLENNNYFNLDLENYLFNNSLKNLDKSDLCLLIGSNLRVESPIL 166 (366)
T ss_pred ccEEEEECCCCC-HHHHHHHHHHHHHhCCCceeccccccccccccccccCCccCCCHHHHhhCCEEEEEcCCcchhhHHH
Confidence 445566666543 4556688899998888766532110 11 5579999999999885433221
Q ss_pred ccc----c-CCCC-EEEEcCCc
Q 038651 150 YSL----L-LNKK-AILMQPDR 165 (324)
Q Consensus 150 ~~~----~-~~~~-iI~id~d~ 165 (324)
+.. . .... ++.|++..
T Consensus 167 ~~rlrka~~~~~~ki~vi~~~~ 188 (366)
T cd02774 167 NIRLRNRYNKGNKKIFVIGNKF 188 (366)
T ss_pred HHHHHHHHHcCCCEEEEeCCcc
Confidence 111 1 1223 88888765
No 356
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=24.43 E-value=1.7e+02 Score=30.03 Aligned_cols=85 Identities=11% Similarity=0.030 Sum_probs=44.7
Q ss_pred EEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhh-hhC-------CCCCCC--CCCCHHHHHHHHHHHHHH
Q 038651 212 VIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVE-IHD-------GPYNVI--ENWNYTGLVEAFQNAIET 281 (324)
Q Consensus 212 vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~-~~~-------~~~~~l--~~~df~~lA~a~G~al~~ 281 (324)
+++-.|-+...+ +.-+.+|.+.+.|+++|.-.=..+...+. +|+ .+++.. .--+-..+.+.+--|++.
T Consensus 71 ~~~t~GPG~~n~--l~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~~~~~~~~~l~~A~~~ 148 (574)
T PRK07979 71 VLVTSGPGATNA--ITGIATAYMDSIPLVVLSGQVATSLIGYDAFQECDMVGISRPVVKHSFLVKQTEDIPQVLKKAFWL 148 (574)
T ss_pred EEECCCccHhhh--HHHHHHHhhcCCCEEEEECCCChhccCCCCCceecHHHHhhcccceEEEeCCHHHHHHHHHHHHHH
Confidence 344456554433 36699999999999999875443322111 111 001100 001223333333335555
Q ss_pred hHHhCCCCeEEEEEEecC
Q 038651 282 AAVEKKDCLCFIEAIVHK 299 (324)
Q Consensus 282 a~~~~~~~p~lIeV~id~ 299 (324)
|. ....||+.|||..|-
T Consensus 149 A~-~~~~GPv~l~iP~Dv 165 (574)
T PRK07979 149 AA-SGRPGPVVVDLPKDI 165 (574)
T ss_pred Hc-cCCCCcEEEEcChhh
Confidence 53 345699999998874
No 357
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=24.38 E-value=62 Score=29.78 Aligned_cols=55 Identities=18% Similarity=0.033 Sum_probs=35.9
Q ss_pred cCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecC-CCCCc----------cc--cCCcEEEEEcCc
Q 038651 86 KAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMP-SAKGM----------IV--EFADAYIFVESI 141 (324)
Q Consensus 86 ~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~-~gkg~----------~l--~~aDlvl~lG~~ 141 (324)
..++++++.|.... .-+.+++.+..+..|+.+..-. ..... .+ .++|+||.+|..
T Consensus 18 ~~~~~lvv~d~~t~-~~~g~~v~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vGgG 85 (250)
T PF13685_consen 18 GLKKVLVVTDENTY-KAAGEKVEESLKSAGIEVAVIEEFVGDADEDEVEKLVEALRPKDADLIIGVGGG 85 (250)
T ss_dssp T-SEEEEEEETTHH-HHHHHHHHHHHHTTT-EEEEEE-EE---BHHHHHHHHTTS--TT--EEEEEESH
T ss_pred CCCcEEEEEcCCHH-HHHHHHHHHHHHHcCCeEEEEecCCCCCCHHHHHHHHHHhcccCCCEEEEeCCc
Confidence 35799999999874 3567889998888898887332 11111 33 488999999975
No 358
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=24.22 E-value=1.1e+02 Score=29.02 Aligned_cols=37 Identities=22% Similarity=0.098 Sum_probs=28.7
Q ss_pred hhhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEE
Q 038651 83 ALLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFA 119 (324)
Q Consensus 83 ~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~ 119 (324)
-+...++|++++=.|...+|-.....+||+++|++.+
T Consensus 85 ~i~~~~~p~iIlI~G~sgsGKStlA~~La~~l~~~~v 121 (301)
T PRK04220 85 RIRKSKEPIIILIGGASGVGTSTIAFELASRLGIRSV 121 (301)
T ss_pred HHhcCCCCEEEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 3778889976665566667777789999999999943
No 359
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=24.17 E-value=81 Score=31.38 Aligned_cols=94 Identities=13% Similarity=0.062 Sum_probs=52.3
Q ss_pred HHHhhhcCceEEEE--eCCc----------------chHHHHHHHHHHhhcCCcchhhhhhhcCCCcEEEECCCCCccch
Q 038651 42 DGSARARAVGAYVV--TFIV----------------GRLSIINAIAGAYSENFPAATITALLKAVKPAMIGGPKLSVSKA 103 (324)
Q Consensus 42 dgYaR~tg~gv~~~--t~Gp----------------G~~N~~tgla~A~~d~~Pvl~It~L~~AkrPvIl~G~g~~~~~a 103 (324)
.|++|+.|..|+++ ..|. |.-.++--+--|-.-+.|+|.+.= -|=...|.++-..+.
T Consensus 170 tG~grI~GrpV~VIandkg~~~ke~~~rnfG~~~peGyRKAlR~mklAekf~lPIVtLVD-----TpGA~pG~~AEe~Gq 244 (431)
T PLN03230 170 CGIGSMEGMSFMFIGHQKGRNTKENIYRNFAMPQPNGYRKALRFMRHAEKFGFPILTFVD-----TPGAYAGIKAEELGQ 244 (431)
T ss_pred EEEEEECCEEEEEEEeccCcccccccccCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEEe-----CCCcCCCHHHHHHhH
Confidence 58899988433332 2221 444555566666777777776520 011123333322222
Q ss_pred HHHHHHHH---HHhCCcEEecCCCCCc-----cccCCcEEEEEcC
Q 038651 104 TIAFVELA---DACGYAFAVMPSAKGM-----IVEFADAYIFVES 140 (324)
Q Consensus 104 ~~~l~~la---e~l~~Pv~tt~~gkg~-----~l~~aDlvl~lG~ 140 (324)
.+.+.+.. ..+.+|+++...|+|. .+.-+|.|+++-.
T Consensus 245 a~aIAr~l~ams~l~VPiISVViGeGgSGGAlalg~aD~VlMle~ 289 (431)
T PLN03230 245 GEAIAFNLREMFGLRVPIIATVIGEGGSGGALAIGCGNRMLMMEN 289 (431)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEeCCCCcHHHHHhhcCCEEEEecC
Confidence 23343333 2346899999988874 5556898888765
No 360
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=24.14 E-value=1.7e+02 Score=29.85 Aligned_cols=83 Identities=12% Similarity=0.026 Sum_probs=44.2
Q ss_pred EEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhh-hhC----CCCCCCC-----CCCHHHHHHHHHHHHHHh
Q 038651 213 IAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVE-IHD----GPYNVIE-----NWNYTGLVEAFQNAIETA 282 (324)
Q Consensus 213 v~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~-~~~----~~~~~l~-----~~df~~lA~a~G~al~~a 282 (324)
++-.|.+...+ +.-+.+|...+.|++++.-.-......+. +|+ .-+..+. -.+-..+.+.+--|++.|
T Consensus 69 ~~t~GPG~~N~--l~~l~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~l~~~vtk~~~~v~~~~~~~~~i~~A~~~a 146 (549)
T PRK06457 69 MGTSGPGSIHL--LNGLYDAKMDHAPVIALTGQVESDMIGHDYFQEVNLTKLFDDVAVFNQILINPENAEYIIRRAIREA 146 (549)
T ss_pred EeCCCCchhhh--HHHHHHHHhcCCCEEEEecCCCccccCCCcccccchhhhhccceeEEEEeCCHHHHHHHHHHHHHHH
Confidence 34445554433 35699999999999999875433221111 111 0010000 012233333333366666
Q ss_pred HHhCCCCeEEEEEEecC
Q 038651 283 AVEKKDCLCFIEAIVHK 299 (324)
Q Consensus 283 ~~~~~~~p~lIeV~id~ 299 (324)
+ ...||+.||+..|-
T Consensus 147 ~--~~~GPV~l~iP~Dv 161 (549)
T PRK06457 147 I--SKRGVAHINLPVDI 161 (549)
T ss_pred h--cCCCCEEEEeCHhH
Confidence 4 35699999999774
No 361
>COG0846 SIR2 NAD-dependent protein deacetylases, SIR2 family [Transcription]
Probab=23.89 E-value=45 Score=30.73 Aligned_cols=42 Identities=17% Similarity=0.218 Sum_probs=27.6
Q ss_pred cccCCcEEEEEcCccCCccccccccc--CCCC-EEEEcCCccccc
Q 038651 128 IVEFADAYIFVESIFNDYSSVGYSLL--LNKK-AILMQPDRIVVA 169 (324)
Q Consensus 128 ~l~~aDlvl~lG~~~~~~~t~~~~~~--~~~~-iI~id~d~~~i~ 169 (324)
.+++||++|++||++.-+.-...... .... +|.|+.++..+.
T Consensus 179 ~~~~~d~liviGTSl~V~Paa~~p~~~~~~g~~~i~iN~~~~~~~ 223 (250)
T COG0846 179 ALKEADLLIVIGTSLKVYPAAGLPELAKRRGAKVIEINLEPTRLD 223 (250)
T ss_pred HhccCCEEEEECcceEEcChhhhhHHHHhcCCEEEEECCCcccCc
Confidence 45799999999999854433222211 1233 889998877665
No 362
>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene. This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.
Probab=23.76 E-value=4.8e+02 Score=23.86 Aligned_cols=54 Identities=13% Similarity=-0.066 Sum_probs=29.6
Q ss_pred CeEeecCchHHHHHHHHHHhhh-c--CceEEEEeCCcchHHHHHHHH-HHhhcCCcchhhh
Q 038651 26 SRDVGCCNELNAGYAADGSARA-R--AVGAYVVTFIVGRLSIINAIA-GAYSENFPAATIT 82 (324)
Q Consensus 26 i~~i~~rhE~~A~~aAdgYaR~-t--g~gv~~~t~GpG~~N~~tgla-~A~~d~~Pvl~It 82 (324)
|+++.+-++....-+...+.|+ . ++-+++ ||..+.....+. .+...++|+|..+
T Consensus 39 i~l~~~D~~~~~~~~~~~~~~lv~~~~v~~ii---g~~~s~~~~~~~~~~~~~~ip~v~~~ 96 (336)
T cd06360 39 VEFVVEDDEAKPDVAVEKARKLIEQDKVDVVV---GPVHSGEALAMVKVLREPGTPLINPN 96 (336)
T ss_pred EEEEEcCCCCChHHHHHHHHHHHHHhCCcEEE---ccCccHhHHHHHHHHHhcCceEEecC
Confidence 4677776666666666777775 2 343333 333332222322 2334589998773
No 363
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=23.74 E-value=1.8e+02 Score=29.82 Aligned_cols=83 Identities=6% Similarity=0.027 Sum_probs=43.7
Q ss_pred EEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhh-hhC----CCCCCCCC-----CCHHHHHHHHHHHHHHh
Q 038651 213 IAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVE-IHD----GPYNVIEN-----WNYTGLVEAFQNAIETA 282 (324)
Q Consensus 213 v~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~-~~~----~~~~~l~~-----~df~~lA~a~G~al~~a 282 (324)
++-.|.+...+ +.-|.+|.+.++|+++|.-.=..+..-+. +|+ .-+..+.. .+=..+.+.+--|++.|
T Consensus 79 ~~t~GpG~~N~--~~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~Q~~d~~~l~~~vtk~~~~v~~~~~~~~~i~~A~~~A 156 (578)
T PRK06112 79 TAQNGPAATLL--VAPLAEALKASVPIVALVQDVNRDQTDRNAFQELDHIALFQSCTKWVRRVTVAERIDDYVDQAFTAA 156 (578)
T ss_pred EeCCCCcHHHH--HHHHHHHhhcCCCEEEEecCCccccCCCCCccccChhhhhccccceEEEeCCHHHHHHHHHHHHHHH
Confidence 34455554333 35699999999999999865333221111 111 00111100 11133333333366666
Q ss_pred HHhCCCCeEEEEEEec
Q 038651 283 AVEKKDCLCFIEAIVH 298 (324)
Q Consensus 283 ~~~~~~~p~lIeV~id 298 (324)
. ....||+.|+|..|
T Consensus 157 ~-~~~~GPv~l~iP~D 171 (578)
T PRK06112 157 T-SGRPGPVVLLLPAD 171 (578)
T ss_pred h-hCCCCcEEEEcCHh
Confidence 4 34568999999988
No 364
>PRK08322 acetolactate synthase; Reviewed
Probab=23.68 E-value=2.1e+02 Score=29.03 Aligned_cols=85 Identities=11% Similarity=-0.013 Sum_probs=44.1
Q ss_pred EEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhh-hhC-------CCCCCC--CCCCHHHHHHHHHHHHHH
Q 038651 212 VIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVE-IHD-------GPYNVI--ENWNYTGLVEAFQNAIET 281 (324)
Q Consensus 212 vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~-~~~-------~~~~~l--~~~df~~lA~a~G~al~~ 281 (324)
+++-.|.+...+ +.-+..|.+.++|++++.-.=..+...+. +|. ++++.. .-.+-..+.+.+.-|++.
T Consensus 67 ~~~t~GpG~~N~--~~~i~~A~~~~~Pll~i~g~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~ 144 (547)
T PRK08322 67 CLSTLGPGATNL--VTGVAYAQLGGMPMVAITGQKPIKRSKQGSFQIVDVVAMMAPLTKWTRQIVSPDNIPEVVREAFRL 144 (547)
T ss_pred EEECCCccHhHH--HHHHHHHhhcCCCEEEEeccccccccCCCccccccHHHHhhhheeEEEEeCCHHHHHHHHHHHHHH
Confidence 334445554433 25699999999999999865333322111 110 000000 001222333333335655
Q ss_pred hHHhCCCCeEEEEEEecC
Q 038651 282 AAVEKKDCLCFIEAIVHK 299 (324)
Q Consensus 282 a~~~~~~~p~lIeV~id~ 299 (324)
|. ....||+.||+..|-
T Consensus 145 A~-~~~~GPV~l~iP~dv 161 (547)
T PRK08322 145 AE-EERPGAVHLELPEDI 161 (547)
T ss_pred Hc-cCCCCcEEEEcChhh
Confidence 54 345689999999873
No 365
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=23.64 E-value=94 Score=29.92 Aligned_cols=52 Identities=10% Similarity=-0.028 Sum_probs=31.6
Q ss_pred CCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCC-CC---c--------cc--cC--CcEEEEEcCc
Q 038651 87 AVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSA-KG---M--------IV--EF--ADAYIFVESI 141 (324)
Q Consensus 87 AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~g-kg---~--------~l--~~--aDlvl~lG~~ 141 (324)
.||++|+.|.++...+..+.+.+..+... +. .+.+ .. . .+ .+ +|+||+||..
T Consensus 23 ~~r~lvVtd~~~~~~g~~~~v~~~L~~~~--~~-~~~~v~~~pt~~~v~~~~~~~~~~~~~~D~IIaiGGG 90 (355)
T TIGR03405 23 GRRVVVVTFPEARALGLARRLEALLGGRL--AA-LIDDVAPNPDVAQLDGLYARLWGDEGACDLVIALGGG 90 (355)
T ss_pred CCeEEEEECcchhhcchHHHHHHHhccCc--EE-EeCCCCCCcCHHHHHHHHHHHHhcCCCCCEEEEeCCc
Confidence 48999999988766666666666554322 22 1211 11 1 22 23 9999999964
No 366
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=23.57 E-value=1.9e+02 Score=29.57 Aligned_cols=82 Identities=13% Similarity=0.023 Sum_probs=44.4
Q ss_pred EEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhh-hhC----C---CCC----CCCCCCHHHHHHHHHHHHH
Q 038651 213 IAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVE-IHD----G---PYN----VIENWNYTGLVEAFQNAIE 280 (324)
Q Consensus 213 v~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~-~~~----~---~~~----~l~~~df~~lA~a~G~al~ 280 (324)
++-.|-+...+ +.-+.+|...+.|++++.-.-......+. +|+ . +++ .+. +-..+.+.+--|++
T Consensus 73 ~~t~GpG~~N~--l~gi~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~i~~~~tk~~~~v~--~~~~~~~~l~~A~~ 148 (572)
T PRK06456 73 TATSGPGTTNL--VTGLITAYWDSSPVIAITGQVPRSVMGKMAFQEADAMGVFENVTKYVIGIK--RIDEIPQWIKNAFY 148 (572)
T ss_pred EeCCCCCHHHH--HHHHHHHHhhCCCEEEEecCCCccccCCCCccccchhhhhhccceeEEEeC--CHHHHHHHHHHHHH
Confidence 33456555433 36699999999999999875443322111 111 0 011 111 22233333333555
Q ss_pred HhHHhCCCCeEEEEEEecC
Q 038651 281 TAAVEKKDCLCFIEAIVHK 299 (324)
Q Consensus 281 ~a~~~~~~~p~lIeV~id~ 299 (324)
.|. ....||+.||+..|-
T Consensus 149 ~A~-~~~~GPV~l~iP~Dv 166 (572)
T PRK06456 149 IAT-TGRPGPVVIDIPRDI 166 (572)
T ss_pred HHh-cCCCCcEEEecChhH
Confidence 553 345699999998764
No 367
>cd06356 PBP1_Amide_Urea_BP_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the type I periplasmic-binding proteins that are predicted to have a function similar to that of an active transport system for short chain amides and/or urea in bacteria and Archaea, by sequence comparison and phylogenetic analysis.
Probab=23.50 E-value=4.9e+02 Score=24.17 Aligned_cols=55 Identities=9% Similarity=-0.121 Sum_probs=37.4
Q ss_pred CCeEeecCchHHHHHHHHHHhhhc---CceEEEEeCCcchHHHHHHHHHHhhcCCcchhh
Q 038651 25 GSRDVGCCNELNAGYAADGSARAR---AVGAYVVTFIVGRLSIINAIAGAYSENFPAATI 81 (324)
Q Consensus 25 ~i~~i~~rhE~~A~~aAdgYaR~t---g~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~I 81 (324)
.|++|..=++....-+...+.|+- ++-+++...+.+.+.++..+++ ..++|+|..
T Consensus 40 ~v~lv~~D~~~~p~~a~~~~~~Li~~~~V~aiiG~~~s~~~~a~~~~~~--~~~vp~i~~ 97 (334)
T cd06356 40 EVELVDYDTQSDNERYQQYAQRLALQDKVDVVWGGISSASREAIRPIMD--RTKQLYFYT 97 (334)
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCCEEEeCcchHHHHHHHHHHH--hcCceEEeC
Confidence 389999888988888888888873 3555555555554445544444 557888764
No 368
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=23.47 E-value=2.1e+02 Score=29.49 Aligned_cols=77 Identities=17% Similarity=0.170 Sum_probs=42.6
Q ss_pred EEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhhCCCCCCCCCCCHH-----------------HHHHH
Q 038651 212 VIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIHDGPYNVIENWNYT-----------------GLVEA 274 (324)
Q Consensus 212 vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~~~~~~l~~~df~-----------------~lA~a 274 (324)
+++-.|-+...+ +.-|.+|.+.++|++++.-.=.....-+ . .+...|.. .+.+.
T Consensus 72 ~~~t~GPG~~n~--~~gi~~A~~~~~Pvl~I~g~~~~~~~~~----~---~~q~~d~~~l~~~~tk~~~~i~~~~~~~~~ 142 (588)
T PRK07525 72 VIGQNGPGITNF--VTAVATAYWAHTPVVLVTPQAGTKTIGQ----G---GFQEAEQMPMFEDMTKYQEEVRDPSRMAEV 142 (588)
T ss_pred EEEcCCccHHHH--HHHHHHHhhcCCCEEEEeCCCCcccCCC----C---CCcccchhhhhhhheeEEEECCCHHHHHHH
Confidence 344445554433 2569999999999999983222111100 0 01112333 33333
Q ss_pred HHHHHHHhHHhCCCCeEEEEEEecC
Q 038651 275 FQNAIETAAVEKKDCLCFIEAIVHK 299 (324)
Q Consensus 275 ~G~al~~a~~~~~~~p~lIeV~id~ 299 (324)
+--|++.|. ...||+.|||..|-
T Consensus 143 i~rA~~~A~--~~~GPV~i~iP~Dv 165 (588)
T PRK07525 143 LNRVFDKAK--RESGPAQINIPRDY 165 (588)
T ss_pred HHHHHHHHh--cCCCCEEEEcChhH
Confidence 333666664 45699999999774
No 369
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=23.47 E-value=1.8e+02 Score=29.86 Aligned_cols=83 Identities=16% Similarity=0.195 Sum_probs=44.6
Q ss_pred EEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhh-hhC----C---CCC----CCCCCCHHHHHHHHHHHH
Q 038651 212 VIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVE-IHD----G---PYN----VIENWNYTGLVEAFQNAI 279 (324)
Q Consensus 212 vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~-~~~----~---~~~----~l~~~df~~lA~a~G~al 279 (324)
+++-.|.+...+ +.-|..|.+.+.|++++.-.-..+..-+. +|+ . +++ .+. +-..+.+.+--|+
T Consensus 82 ~~~t~GPG~~N~--~~gl~~A~~~~~Pvl~ItG~~~~~~~~~~~~q~~d~~~l~~~~tk~~~~v~--~~~~~~~~i~~A~ 157 (571)
T PRK07710 82 VIATSGPGATNV--VTGLADAMIDSLPLVVFTGQVATSVIGSDAFQEADIMGITMPVTKHNYQVR--KASDLPRIIKEAF 157 (571)
T ss_pred EEECCCccHHHH--HHHHHHHhhcCCCEEEEeccCCccccCCCCccccchhhhhhcccceEEecC--CHHHHHHHHHHHH
Confidence 344456554433 36699999999999999876555432211 111 0 000 111 1122223222255
Q ss_pred HHhHHhCCCCeEEEEEEecC
Q 038651 280 ETAAVEKKDCLCFIEAIVHK 299 (324)
Q Consensus 280 ~~a~~~~~~~p~lIeV~id~ 299 (324)
+.|. ....||+.||+..|-
T Consensus 158 ~~A~-~~~~GPV~l~iP~Dv 176 (571)
T PRK07710 158 HIAT-TGRPGPVLIDIPKDM 176 (571)
T ss_pred HHHh-cCCCCcEEEEcChhH
Confidence 5553 234699999999863
No 370
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=23.42 E-value=1.8e+02 Score=29.78 Aligned_cols=34 Identities=15% Similarity=0.060 Sum_probs=23.5
Q ss_pred EEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCC
Q 038651 212 VIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNG 247 (324)
Q Consensus 212 vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~ 247 (324)
+++-.|.+...+ +.-+.+|.+.+.|+++|.-.-.
T Consensus 71 ~~~t~GpG~~N~--l~~i~~A~~~~~Pvlvi~G~~~ 104 (574)
T PRK06882 71 VLVTSGPGATNA--ITGIATAYTDSVPLVILSGQVP 104 (574)
T ss_pred EEECCCccHHHH--HHHHHHHhhcCCCEEEEecCCC
Confidence 334446554433 3669999999999999986444
No 371
>TIGR01591 Fdh-alpha formate dehydrogenase, alpha subunit, archaeal-type. This model is well-defined, with only a single fragmentary sequence falling between trusted and noise. The alpha subunit of a version of nitrate reductase is closely related.
Probab=23.38 E-value=1.4e+02 Score=31.22 Aligned_cols=41 Identities=20% Similarity=0.187 Sum_probs=25.5
Q ss_pred cccCCcEEEEEcCccCCccccccccc----CCCC-EEEEcCCcccc
Q 038651 128 IVEFADAYIFVESIFNDYSSVGYSLL----LNKK-AILMQPDRIVV 168 (324)
Q Consensus 128 ~l~~aDlvl~lG~~~~~~~t~~~~~~----~~~~-iI~id~d~~~i 168 (324)
-+++||+||++|+.+.+.....+... .+.. +|.||+.....
T Consensus 152 di~~ad~il~~G~n~~~~~~~~~~~i~~a~~~G~klvvidp~~s~t 197 (671)
T TIGR01591 152 EIENADLIVIIGYNPAESHPVVAQYLKNAKRNGAKIIVIDPRKTET 197 (671)
T ss_pred HHHhCCEEEEECCChhhccCHHHHHHHHHHHCCCeEEEECCCCChh
Confidence 56789999999998754322111111 1233 99999876543
No 372
>cd02750 MopB_Nitrate-R-NarG-like Respiratory nitrate reductase A (NarGHI), alpha chain (NarG) and related proteins. Under anaerobic conditions in the presence of nitrate, E. coli synthesizes the cytoplasmic membrane-bound quinol-nitrate oxidoreductase (NarGHI), which reduces nitrate to nitrite and forms part of a redox loop generating a proton-motive force. Found in prokaryotes and some archaea, NarGHI usually functions as a heterotrimer. The alpha chain contains the molybdenum cofactor-containing Mo-bisMGD catalytic subunit. Members of the MopB_Nitrate-R-NarG-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.
Probab=23.30 E-value=1.3e+02 Score=29.83 Aligned_cols=42 Identities=21% Similarity=0.071 Sum_probs=26.9
Q ss_pred cccCCcEEEEEcCccCCccccccccc----CCCC-EEEEcCCccccc
Q 038651 128 IVEFADAYIFVESIFNDYSSVGYSLL----LNKK-AILMQPDRIVVA 169 (324)
Q Consensus 128 ~l~~aDlvl~lG~~~~~~~t~~~~~~----~~~~-iI~id~d~~~i~ 169 (324)
-+++||+||++|+...+.....+... .+.. +|.||+...+..
T Consensus 167 d~~~ad~il~~G~N~~~~~~~~~~~l~~ar~~GaklividPr~s~ta 213 (461)
T cd02750 167 DWYNADYIIMWGSNVPVTRTPDAHFLTEARYNGAKVVVVSPDYSPSA 213 (461)
T ss_pred HHhcCcEEEEECCChHHccCchHHHHHHHHHCCCEEEEEcCCCCcch
Confidence 45899999999998754322222111 1233 999999876554
No 373
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=23.12 E-value=2e+02 Score=21.03 Aligned_cols=49 Identities=18% Similarity=0.133 Sum_probs=31.4
Q ss_pred CcEEEECCCCCccchH-HHHHHHHHHhCCcEEecCCCCC-ccccCCcEEEE
Q 038651 89 KPAMIGGPKLSVSKAT-IAFVELADACGYAFAVMPSAKG-MIVEFADAYIF 137 (324)
Q Consensus 89 rPvIl~G~g~~~~~a~-~~l~~lae~l~~Pv~tt~~gkg-~~l~~aDlvl~ 137 (324)
|-++++|.|...+... ..++++....++....+...-. ...++.|+|+.
T Consensus 1 kilvvC~~G~~tS~ll~~kl~~~f~~~~i~~~~~~~~~~~~~~~~~DlIis 51 (86)
T cd05563 1 KILAVCGSGLGSSLMLKMNVEKVLKELGIEAEVEHTDLGSAKASSADIIVT 51 (86)
T ss_pred CEEEECCCCccHHHHHHHHHHHHHHHCCCcEEEEEecccccCCCCCCEEEE
Confidence 3578999998765543 5788877888887544332111 13567887654
No 374
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=22.92 E-value=1.6e+02 Score=28.23 Aligned_cols=54 Identities=15% Similarity=0.178 Sum_probs=35.9
Q ss_pred CCCcEEEECCCCCccchHHHHHHHHHHhCCcEEe-cC-CC---CCc--------cc-----cCCcEEEEEcCc
Q 038651 87 AVKPAMIGGPKLSVSKATIAFVELADACGYAFAV-MP-SA---KGM--------IV-----EFADAYIFVESI 141 (324)
Q Consensus 87 AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~t-t~-~g---kg~--------~l-----~~aDlvl~lG~~ 141 (324)
.+|++|+.|.++.. ...+.+.+..+..++.+.. .. .+ +.. .+ .++|+||+||..
T Consensus 31 ~~~~livtd~~~~~-~~~~~v~~~L~~~gi~~~~~~~~~~e~~~~~~~v~~~~~~~~~~~~~r~d~IIavGGG 102 (358)
T PRK00002 31 GKKVAIVTDETVAP-LYLEKLRASLEAAGFEVDVVVLPDGEQYKSLETLEKIYDALLEAGLDRSDTLIALGGG 102 (358)
T ss_pred CCeEEEEECCchHH-HHHHHHHHHHHhcCCceEEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCEEEEEcCc
Confidence 57899999988754 5777888877887776542 11 22 222 22 235999999975
No 375
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=22.90 E-value=2.1e+02 Score=29.46 Aligned_cols=84 Identities=14% Similarity=0.183 Sum_probs=43.7
Q ss_pred EEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhh-hhC----C---CCCCC--CCCCHHHHHHHHHHHHHH
Q 038651 212 VIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVE-IHD----G---PYNVI--ENWNYTGLVEAFQNAIET 281 (324)
Q Consensus 212 vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~-~~~----~---~~~~l--~~~df~~lA~a~G~al~~ 281 (324)
+++-.|-+...+ +.-|.+|.+.+.|+++|.-.=..+..-+. +|+ . +++.. .-.+=..+.+.+--|++.
T Consensus 68 ~~~t~GPG~~N~--~~gla~A~~~~~Pvl~I~g~~~~~~~~~~~~Q~~d~~~l~~~vtk~~~~v~~~~~~~~~i~~A~~~ 145 (579)
T TIGR03457 68 VIGQNGPGVTNC--VTAIAAAYWAHTPVVIVTPEAGTKTIGLGGFQEADQLPMFQEFTKYQGHVRHPSRMAEVLNRCFER 145 (579)
T ss_pred EEECCCchHHHH--HHHHHHHhhcCCCEEEEeCCCccccCCCCCCcccchhhhhhcceeEEEecCCHHHHHHHHHHHHHH
Confidence 334456555433 25699999999999999743222211110 110 0 00000 001223334433336666
Q ss_pred hHHhCCCCeEEEEEEecC
Q 038651 282 AAVEKKDCLCFIEAIVHK 299 (324)
Q Consensus 282 a~~~~~~~p~lIeV~id~ 299 (324)
|. ...||+.||+..|-
T Consensus 146 A~--~~~GPV~l~iP~Dv 161 (579)
T TIGR03457 146 AW--REMGPAQLNIPRDY 161 (579)
T ss_pred Hh--cCCCCEEEEeCcch
Confidence 64 34589999999874
No 376
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=22.87 E-value=73 Score=31.07 Aligned_cols=37 Identities=14% Similarity=0.103 Sum_probs=27.5
Q ss_pred hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecC
Q 038651 84 LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMP 122 (324)
Q Consensus 84 L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~ 122 (324)
+...-++++++|+|..+.--.+.|..++| |.+|.+|-
T Consensus 287 ~~~~p~~l~vcGGG~~N~llm~rLa~l~~--g~~V~~t~ 323 (371)
T COG2377 287 LQGDPRRLVVCGGGRRNPLLMARLAALLE--GVEVATTD 323 (371)
T ss_pred ccCCCceeEeecCCccCHHHHHHHHHhcC--CCeeeech
Confidence 45667999999999987666666666666 87777653
No 377
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=22.73 E-value=1.4e+02 Score=28.31 Aligned_cols=73 Identities=12% Similarity=0.031 Sum_probs=43.0
Q ss_pred eCCcchHHHHHHHHHHhhcCCcchhhhhhhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEe-cCC-CC--Cc----
Q 038651 56 TFIVGRLSIINAIAGAYSENFPAATITALLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAV-MPS-AK--GM---- 127 (324)
Q Consensus 56 t~GpG~~N~~tgla~A~~d~~Pvl~It~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~t-t~~-gk--g~---- 127 (324)
..|+|+.+-+.-+... +...+|.+|+.|..+... ..+.+.+..+..++.+.. ... .+ ..
T Consensus 5 ~~G~g~l~~l~~~~~~------------~~~~~kvlivtd~~~~~~-~~~~i~~~L~~~~~~~~i~~~~~~~~p~~~~v~ 71 (332)
T cd08549 5 VVGEGAINDIGPIINK------------IGVNSKIMIVCGNNTYKV-AGKEIIERLESNNFTKEVLERDSLLIPDEYELG 71 (332)
T ss_pred EECCChHHHHHHHHHH------------cCCCCcEEEEECCcHHHH-HHHHHHHHHHHcCCeEEEEecCCCCCCCHHHHH
Confidence 4577766655443221 112378888888877653 347777777776764422 111 11 11
Q ss_pred -----cccCCcEEEEEcCc
Q 038651 128 -----IVEFADAYIFVESI 141 (324)
Q Consensus 128 -----~l~~aDlvl~lG~~ 141 (324)
+.+++|+||+||..
T Consensus 72 ~~~~~~~~~~d~IIaiGGG 90 (332)
T cd08549 72 EVLIKLDKDTEFLLGIGSG 90 (332)
T ss_pred HHHHHhhcCCCEEEEECCc
Confidence 33489999999974
No 378
>PRK13946 shikimate kinase; Provisional
Probab=22.72 E-value=1.2e+02 Score=25.88 Aligned_cols=33 Identities=15% Similarity=0.075 Sum_probs=25.6
Q ss_pred CCcEEEECCCCCccchHHHHHHHHHHhCCcEEecC
Q 038651 88 VKPAMIGGPKLSVSKATIAFVELADACGYAFAVMP 122 (324)
Q Consensus 88 krPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~ 122 (324)
++.+++.|... ++-..-.+.|++++|+|++.+-
T Consensus 10 ~~~I~l~G~~G--sGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 10 KRTVVLVGLMG--AGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCeEEEECCCC--CCHHHHHHHHHHHcCCCeECcC
Confidence 46788888643 4677788999999999998653
No 379
>PRK11269 glyoxylate carboligase; Provisional
Probab=22.61 E-value=2.4e+02 Score=29.09 Aligned_cols=82 Identities=10% Similarity=0.045 Sum_probs=44.2
Q ss_pred EEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhh-hhC-------CCCC----CCCCCCHHHHHHHHHHHHH
Q 038651 213 IAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVE-IHD-------GPYN----VIENWNYTGLVEAFQNAIE 280 (324)
Q Consensus 213 v~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~-~~~-------~~~~----~l~~~df~~lA~a~G~al~ 280 (324)
++-.|.+...+ +.-+.+|.+.+.|++++.-.-..+..-+. +|. ++++ .+. +=..+.+.+--|++
T Consensus 73 ~~t~GPG~~N~--l~gl~~A~~~~~Pvl~I~G~~~~~~~~~~~~q~~d~~~l~~~itk~s~~v~--~~~~~~~~i~~A~~ 148 (591)
T PRK11269 73 IGTSGPAGTDM--ITGLYSASADSIPILCITGQAPRARLHKEDFQAVDIESIAKPVTKWAVTVR--EPALVPRVFQQAFH 148 (591)
T ss_pred EECCCCcHHHH--HHHHHHHhhcCCCEEEEecCCCccccCCCcccccChhhHhhcceeEEEEcC--CHHHHHHHHHHHHH
Confidence 33445554433 25699999999999999876554322111 111 0111 111 22233333333555
Q ss_pred HhHHhCCCCeEEEEEEecC
Q 038651 281 TAAVEKKDCLCFIEAIVHK 299 (324)
Q Consensus 281 ~a~~~~~~~p~lIeV~id~ 299 (324)
.|. ....||+.|++..|-
T Consensus 149 ~A~-~~~~GPV~l~iP~Dv 166 (591)
T PRK11269 149 LMR-SGRPGPVLIDLPFDV 166 (591)
T ss_pred HHh-hCCCCeEEEEeChhh
Confidence 553 345689999999773
No 380
>PF13223 DUF4031: Protein of unknown function (DUF4031)
Probab=22.56 E-value=64 Score=24.56 Aligned_cols=18 Identities=11% Similarity=0.041 Sum_probs=15.5
Q ss_pred cchHHHHHHHHHHhCCcE
Q 038651 101 SKATIAFVELADACGYAF 118 (324)
Q Consensus 101 ~~a~~~l~~lae~l~~Pv 118 (324)
++..+||-+||+++|+|=
T Consensus 20 aDt~~ELHafA~riGv~r 37 (83)
T PF13223_consen 20 ADTLDELHAFAARIGVPR 37 (83)
T ss_pred cCCHHHHHHHHHHcCCCH
Confidence 456899999999999984
No 381
>PRK09130 NADH dehydrogenase subunit G; Validated
Probab=22.48 E-value=88 Score=33.16 Aligned_cols=32 Identities=25% Similarity=0.289 Sum_probs=24.0
Q ss_pred hhcCCCcEEEECCCCCccc----hHHHHHHHHHHhC
Q 038651 84 LLKAVKPAMIGGPKLSVSK----ATIAFVELADACG 115 (324)
Q Consensus 84 L~~AkrPvIl~G~g~~~~~----a~~~l~~lae~l~ 115 (324)
|++||+|+|+.|.|+..+. ....+..|+..+|
T Consensus 434 l~~Ak~~~Ii~G~g~~~~~~g~~~~~ai~~La~~~G 469 (687)
T PRK09130 434 LKAAKRPMIIVGQGALARADGAAVLALAAKLAEKVG 469 (687)
T ss_pred HhcCCCcEEEECCcccccccHHHHHHHHHHHHHHhC
Confidence 7789999999999987543 2345666777766
No 382
>PRK05748 replicative DNA helicase; Provisional
Probab=22.42 E-value=1.1e+02 Score=30.46 Aligned_cols=36 Identities=19% Similarity=0.201 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhCCcEEe-cCCCCCc------------------cccCCcEEEEEc
Q 038651 104 TIAFVELADACGYAFAV-MPSAKGM------------------IVEFADAYIFVE 139 (324)
Q Consensus 104 ~~~l~~lae~l~~Pv~t-t~~gkg~------------------~l~~aDlvl~lG 139 (324)
...|.+||..+++||+. +...+++ +-+.||+|+.+-
T Consensus 344 ~~~LK~lAke~~i~vi~lsQlnr~~~~r~~k~p~lsdlr~Sg~Ieq~AD~v~~l~ 398 (448)
T PRK05748 344 SRSLKALAKELKVPVIALSQLSRGVEQRQDKRPVMSDIRESGSIEQDADIVAFLY 398 (448)
T ss_pred HHHHHHHHHHhCCeEEEecccChhHhhcCCCCCChHHHHhhcchhcCCCEEEEEe
Confidence 34788999999999996 4444432 457899999885
No 383
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides. This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int
Probab=22.34 E-value=6.2e+02 Score=23.31 Aligned_cols=55 Identities=15% Similarity=0.029 Sum_probs=38.6
Q ss_pred CCeEeecCchHHHHHHHHHHhhhc---CceEEEEeCCcchHHHHHHHHHHhhcCCcchhhh
Q 038651 25 GSRDVGCCNELNAGYAADGSARAR---AVGAYVVTFIVGRLSIINAIAGAYSENFPAATIT 82 (324)
Q Consensus 25 ~i~~i~~rhE~~A~~aAdgYaR~t---g~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It 82 (324)
.|+++.+=|+....-++..+.++- ++-+++...+.+.+..+..+++ .++|+|..+
T Consensus 40 ~i~l~~~D~~~~p~~a~~~a~~Li~~~~v~aviG~~~s~~a~a~~~~~~---~~vp~i~~~ 97 (333)
T cd06358 40 EVELVIVDDGSPPAEAAAAAARLVDEGGVDAIIGWHTSAVRNAVAPVVA---GRVPYVYTS 97 (333)
T ss_pred EEEEEEECCCCChHHHHHHHHHHHHhCCCcEEEecCcHHHHHHHHHHHh---cCceEEeCC
Confidence 388898888888888888888863 3444444555555555666666 899998753
No 384
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=21.77 E-value=6e+02 Score=24.03 Aligned_cols=75 Identities=16% Similarity=0.080 Sum_probs=48.6
Q ss_pred eEEEEeCCcchHHHHHHHHHHhhcCCcchhhh---------------------------------------hhhc-----
Q 038651 51 GAYVVTFIVGRLSIINAIAGAYSENFPAATIT---------------------------------------ALLK----- 86 (324)
Q Consensus 51 gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It---------------------------------------~L~~----- 86 (324)
.-+++++|-...-..-.+.-++..+++.|+|- .|.+
T Consensus 58 pdLiIsaGr~t~~~~~~l~r~~gg~~~~V~i~~P~~~~~~FDlvi~p~HD~~~~~~Nvl~t~ga~~~i~~~~l~~a~~~~ 137 (311)
T PF06258_consen 58 PDLIISAGRRTAPAALALRRASGGRTKTVQIMDPRLPPRPFDLVIVPEHDRLPRGPNVLPTLGAPNRITPERLAEAAAAW 137 (311)
T ss_pred CcEEEECCCchHHHHHHHHHHcCCCceEEEEcCCCCCccccCEEEECcccCcCCCCceEecccCCCcCCHHHHHHHHHhh
Confidence 33445677776666667777777778888882 0333
Q ss_pred --------CCCcEEEECCCCCccc--------hHHHHHHHHHHhCCcEEecCCCC
Q 038651 87 --------AVKPAMIGGPKLSVSK--------ATIAFVELADACGYAFAVMPSAK 125 (324)
Q Consensus 87 --------AkrPvIl~G~g~~~~~--------a~~~l~~lae~l~~Pv~tt~~gk 125 (324)
.++-.+++||-...+. ..+++.++++..+.-++-|.+-+
T Consensus 138 ~~~~~~l~~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~~~~~~~vttSRR 192 (311)
T PF06258_consen 138 APRLAALPRPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAAYGGSLLVTTSRR 192 (311)
T ss_pred hhhhccCCCCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHhCCCeEEEEcCCC
Confidence 3566778897654432 23578888888887776665544
No 385
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=21.77 E-value=2.5e+02 Score=25.61 Aligned_cols=54 Identities=20% Similarity=0.196 Sum_probs=37.7
Q ss_pred hcCCCcEEEECCCC-CccchHHHHHHHHHHhCCcEEecCCCCCccccCCcEEEEE
Q 038651 85 LKAVKPAMIGGPKL-SVSKATIAFVELADACGYAFAVMPSAKGMIVEFADAYIFV 138 (324)
Q Consensus 85 ~~AkrPvIl~G~g~-~~~~a~~~l~~lae~l~~Pv~tt~~gkg~~l~~aDlvl~l 138 (324)
..+.-..|++|+-- ......+++.+.+++..+|++--+..-..+...+|.+++.
T Consensus 29 ~~~gtdai~vGGS~~vt~~~~~~~v~~ik~~~lPvilfp~~~~~i~~~aDa~l~~ 83 (232)
T PRK04169 29 CESGTDAIIVGGSDGVTEENVDELVKAIKEYDLPVILFPGNIEGISPGADAYLFP 83 (232)
T ss_pred HhcCCCEEEEcCCCccchHHHHHHHHHHhcCCCCEEEeCCCccccCcCCCEEEEE
Confidence 34556788998866 3334556666656668999998666555577889988876
No 386
>PRK07524 hypothetical protein; Provisional
Probab=21.65 E-value=2.8e+02 Score=28.10 Aligned_cols=37 Identities=11% Similarity=0.003 Sum_probs=25.3
Q ss_pred eEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCch
Q 038651 211 AVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNY 249 (324)
Q Consensus 211 ~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~y 249 (324)
++++-.|-+...+ +.-|.+|.+.++|++++.-.-...
T Consensus 67 v~~~t~GpG~~n~--~~gi~~A~~~~~Pvl~i~G~~~~~ 103 (535)
T PRK07524 67 VCFIITGPGMTNI--ATAMGQAYADSIPMLVISSVNRRA 103 (535)
T ss_pred EEEECCCccHHHH--HHHHHHHHhcCCCEEEEeCCCChh
Confidence 3444456555443 366999999999999998755433
No 387
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.62 E-value=1.6e+02 Score=30.06 Aligned_cols=75 Identities=13% Similarity=0.042 Sum_probs=56.1
Q ss_pred HHHHHHHHHhhcCCcchhh-hh----------------hhcCCCcEEEECCCCCccchHHHHHHHHHHh------CCcEE
Q 038651 63 SIINAIAGAYSENFPAATI-TA----------------LLKAVKPAMIGGPKLSVSKATIAFVELADAC------GYAFA 119 (324)
Q Consensus 63 N~~tgla~A~~d~~Pvl~I-t~----------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l------~~Pv~ 119 (324)
.++--|-.|...+-|-++. .+ |.+-+--|++++-..-|++|.++|+--+|+| -++++
T Consensus 364 DlLRdI~sar~~krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvEQLrtHv~rl~~l~~~~v~lf 443 (587)
T KOG0781|consen 364 DLLRDIMSARRRKRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVEQLRTHVERLSALHGTMVELF 443 (587)
T ss_pred hHHHHHHHHHhcCCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHHHHHHHHHHHHHhccchhHHH
Confidence 4555555666666554433 11 7788888999998889999999999999999 68888
Q ss_pred ecCCCCCc------cc-----cCCcEEEE
Q 038651 120 VMPSAKGM------IV-----EFADAYIF 137 (324)
Q Consensus 120 tt~~gkg~------~l-----~~aDlvl~ 137 (324)
.-.-||+. ++ +..|+||+
T Consensus 444 ekGYgkd~a~vak~AI~~a~~~gfDVvLi 472 (587)
T KOG0781|consen 444 EKGYGKDAAGVAKEAIQEARNQGFDVVLI 472 (587)
T ss_pred hhhcCCChHHHHHHHHHHHHhcCCCEEEE
Confidence 88888877 22 57798886
No 388
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=21.58 E-value=1.2e+02 Score=29.77 Aligned_cols=35 Identities=17% Similarity=0.246 Sum_probs=26.6
Q ss_pred HHHHHHHHHhCCcEEecCC-CCCc------------------cccCCcEEEEEc
Q 038651 105 IAFVELADACGYAFAVMPS-AKGM------------------IVEFADAYIFVE 139 (324)
Q Consensus 105 ~~l~~lae~l~~Pv~tt~~-gkg~------------------~l~~aDlvl~lG 139 (324)
..|.+||..+++||+.... .|+. +-+.||+|+.+-
T Consensus 335 ~~Lk~lA~e~~i~vi~lsqlnr~~~~r~~~~p~lsdlr~Sg~ieq~aD~vi~l~ 388 (434)
T TIGR00665 335 RSLKALAKELNVPVIALSQLSRSVEQREDKRPQLSDLRESGSIEQDADIVMFLY 388 (434)
T ss_pred HHHHHHHHHhCCeEEEEeccCcchhccCCCCCChHHHhhccchhhcCCEEEEec
Confidence 5688999999999997542 2221 567999999996
No 389
>TIGR03863 PQQ_ABC_bind ABC transporter, substrate binding protein, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are putative substrate-binding proteins of an ABC transporter family that associates, in gene neighborhood and phylogenomic profile, with pyrroloquinoline-quinone (PQQ)-dependent degradation of certain alcohols, such as 2-phenylethanol in Pseudomonas putida U.
Probab=21.45 E-value=5.9e+02 Score=24.26 Aligned_cols=111 Identities=12% Similarity=-0.026 Sum_probs=65.1
Q ss_pred CeEeecCchHHHHHHHHHHhhhc--CceEEEEeCCcchHHHHHHHHHHhhcCCcchhhh----------h----------
Q 038651 26 SRDVGCCNELNAGYAADGSARAR--AVGAYVVTFIVGRLSIINAIAGAYSENFPAATIT----------A---------- 83 (324)
Q Consensus 26 i~~i~~rhE~~A~~aAdgYaR~t--g~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It----------~---------- 83 (324)
|+++..-+ +...-+....-|+- |+-+++...+.+.+.++..++ ...++|+|.-+ |
T Consensus 35 ielv~~D~-~~p~~a~~~a~~Li~~~V~~vvG~~~S~~~~Av~~~a--~~~~vp~i~~~a~~~~lt~~~c~~~~Fr~~~~ 111 (347)
T TIGR03863 35 FTLDEVAV-RTPEDLVAALKALLAQGVRFFVLDLPAAALLALADAA--KAKGALLFNAGAPDDALRGADCRANLLHTLPS 111 (347)
T ss_pred EEEEEccC-CCHHHHHHHHHHHHHCCCCEEEecCChHHHHHHHHHH--HhCCcEEEeCCCCChHHhCCCCCCCEEEecCC
Confidence 56665533 34444455555542 344444444445444454444 45788888641 1
Q ss_pred -----------hh--cCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecC---CCC-----C----c---cccCCcEE
Q 038651 84 -----------LL--KAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMP---SAK-----G----M---IVEFADAY 135 (324)
Q Consensus 84 -----------L~--~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~---~gk-----g----~---~l~~aDlv 135 (324)
+. ..||..++...........+.+++.+++.|+.|+... .+. . . ...++|+|
T Consensus 112 ~~~~~~ala~~~~~~g~kkvaii~~~~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~~~~~d~s~~~~~~~~s~pDvv 191 (347)
T TIGR03863 112 RAMLADALAQYLAAKRWRRILLIQGPLPADALYADAFRRSAKRFGAKIVAERPFTFSGDPRRTDQSEVPLFTQGADYDVV 191 (347)
T ss_pred hHhHHHHHHHHHHHcCCCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEEeEEeccCCchhhhhcccCceeecCCCCCEE
Confidence 22 4588888876666555667889999999999988542 110 1 1 22578988
Q ss_pred EEEc
Q 038651 136 IFVE 139 (324)
Q Consensus 136 l~lG 139 (324)
++.+
T Consensus 192 ~~~~ 195 (347)
T TIGR03863 192 VVAD 195 (347)
T ss_pred EEec
Confidence 8763
No 390
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=21.32 E-value=2.1e+02 Score=23.18 Aligned_cols=39 Identities=13% Similarity=-0.001 Sum_probs=26.9
Q ss_pred chHHHHHHHHHHhCCcEEecCCCCCc----------cccCCcEEEEEcC
Q 038651 102 KATIAFVELADACGYAFAVMPSAKGM----------IVEFADAYIFVES 140 (324)
Q Consensus 102 ~a~~~l~~lae~l~~Pv~tt~~gkg~----------~l~~aDlvl~lG~ 140 (324)
.....+.++.+..|.-+.....-+.- +++++|+||..|.
T Consensus 19 ~n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~~~~DlvittGG 67 (133)
T cd00758 19 TNGPALEALLEDLGCEVIYAGVVPDDADSIRAALIEASREADLVLTTGG 67 (133)
T ss_pred chHHHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHHhcCCEEEECCC
Confidence 34668899999999766543222222 5567999999984
No 391
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=21.31 E-value=2.7e+02 Score=28.93 Aligned_cols=85 Identities=9% Similarity=0.038 Sum_probs=46.2
Q ss_pred EEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhh-hhCC-------CCCCC--CCCCHHHHHHHHHHHHHH
Q 038651 212 VIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVE-IHDG-------PYNVI--ENWNYTGLVEAFQNAIET 281 (324)
Q Consensus 212 vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~-~~~~-------~~~~l--~~~df~~lA~a~G~al~~ 281 (324)
+++-.|-+...+ +.-|.+|...+.|+++|+-+=....+-+. +|+- +.+.. .-.+-..+.+.+--|++.
T Consensus 89 ~~~t~GPG~~n~--l~gl~~A~~d~~Pvl~i~G~~~~~~~~~~~~Qe~d~~~~~~~vtk~~~~v~~~~~i~~~l~~A~~~ 166 (616)
T PRK07418 89 CFGTSGPGATNL--VTGIATAQMDSVPMVVITGQVPRPAIGTDAFQETDIFGITLPIVKHSYVVRDPSDMARIVAEAFHI 166 (616)
T ss_pred EEECCCccHHHH--HHHHHHHHhcCCCEEEEecCCCccccCCCCcccccHHHHhhhcceeEEEeCCHHHHHHHHHHHHHH
Confidence 334456555433 36699999999999999875443322111 1110 00000 001223444444446666
Q ss_pred hHHhCCCCeEEEEEEecC
Q 038651 282 AAVEKKDCLCFIEAIVHK 299 (324)
Q Consensus 282 a~~~~~~~p~lIeV~id~ 299 (324)
|. ....||++|+|..|-
T Consensus 167 A~-~~~~GPv~l~iP~Dv 183 (616)
T PRK07418 167 AS-SGRPGPVLIDIPKDV 183 (616)
T ss_pred Hh-cCCCCcEEEecchhh
Confidence 64 344599999998753
No 392
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=21.29 E-value=2.8e+02 Score=25.10 Aligned_cols=55 Identities=20% Similarity=0.212 Sum_probs=39.3
Q ss_pred hhcCCCcEEEECCCC-CccchHHHHHHHHHHhCCcEEecCCCCCccccCCcEEEEE
Q 038651 84 LLKAVKPAMIGGPKL-SVSKATIAFVELADACGYAFAVMPSAKGMIVEFADAYIFV 138 (324)
Q Consensus 84 L~~AkrPvIl~G~g~-~~~~a~~~l~~lae~l~~Pv~tt~~gkg~~l~~aDlvl~l 138 (324)
+.++.-..|++|+-- ......+++.+.+.+..+|++--+..-..+...||.+++.
T Consensus 23 ~~~~gtdai~vGGS~~vt~~~~~~~v~~ik~~~lPvilfp~~~~~i~~~aDa~l~~ 78 (223)
T TIGR01768 23 AAESGTDAILIGGSQGVTYEKTDTLIEALRRYGLPIILFPSNPTNVSRDADALFFP 78 (223)
T ss_pred HHhcCCCEEEEcCCCcccHHHHHHHHHHHhccCCCEEEeCCCccccCcCCCEEEEE
Confidence 445666889998866 3345566676777778899998665444477889988876
No 393
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=21.26 E-value=5.1e+02 Score=21.91 Aligned_cols=82 Identities=11% Similarity=0.009 Sum_probs=47.6
Q ss_pred EEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhh-hhC----C---CCC----CCC----CCCHHHHHHHH
Q 038651 212 VIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVE-IHD----G---PYN----VIE----NWNYTGLVEAF 275 (324)
Q Consensus 212 vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~-~~~----~---~~~----~l~----~~df~~lA~a~ 275 (324)
+++-.|-+...+ +.-|.+|...+.|+++|.-+=......+. +|+ . +++ .+. .+|+..+.+.+
T Consensus 64 ~~~t~GpG~~n~--~~gl~~A~~~~~Pvl~i~g~~~~~~~~~~~~q~~d~~~l~~~vtk~~~~v~~~~~~~~~~~~~~~i 141 (162)
T cd07037 64 VVCTSGTAVANL--LPAVVEAYYSGVPLLVLTADRPPELRGTGANQTIDQVGLFGDYVRWSVDLPPPEDDDDLWYLLRLA 141 (162)
T ss_pred EEECCchHHHHH--hHHHHHHHhcCCCEEEEECCCCHHhcCCCCCcccchhhhccceeeEEEecCCcccchhHHHHHHHH
Confidence 344445544433 36699999999999999876443322221 121 1 111 111 13444567766
Q ss_pred HHHHHHhHHhCCCCeEEEEEE
Q 038651 276 QNAIETAAVEKKDCLCFIEAI 296 (324)
Q Consensus 276 G~al~~a~~~~~~~p~lIeV~ 296 (324)
--|++.|. ....||++||+.
T Consensus 142 ~~A~~~A~-~~~~GPv~l~iP 161 (162)
T cd07037 142 NRAVLEAL-SAPPGPVHLNLP 161 (162)
T ss_pred HHHHHHHh-CCCCCCEEEecc
Confidence 66777774 356799999985
No 394
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=21.22 E-value=4.1e+02 Score=27.02 Aligned_cols=62 Identities=15% Similarity=0.050 Sum_probs=42.1
Q ss_pred EEEEeCCcchHHHHHHHHHHhhcCCcchhhhhhhc-CCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCC
Q 038651 52 AYVVTFIVGRLSIINAIAGAYSENFPAATITALLK-AVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSA 124 (324)
Q Consensus 52 v~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~L~~-AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~g 124 (324)
..+...|.|=|-++.-|+..+.- .+ .++..++. ....+.++.++|..+++.+|+|+......
T Consensus 260 ~LvGpnGvGKTTTiaKLA~~~~~----------~~G~~kV~LI~-~Dt~RigA~EQLr~~AeilGVpv~~~~~~ 322 (484)
T PRK06995 260 ALMGPTGVGKTTTTAKLAARCVM----------RHGASKVALLT-TDSYRIGGHEQLRIYGKILGVPVHAVKDA 322 (484)
T ss_pred EEECCCCccHHHHHHHHHHHHHH----------hcCCCeEEEEe-CCccchhHHHHHHHHHHHhCCCeeccCCc
Confidence 34567888888888888866531 11 12444443 33466788999999999999998765443
No 395
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=20.96 E-value=3e+02 Score=28.09 Aligned_cols=32 Identities=19% Similarity=0.250 Sum_probs=22.5
Q ss_pred EEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEe
Q 038651 212 VIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLIN 245 (324)
Q Consensus 212 vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~N 245 (324)
+++-.|.+.... +.-|.+|.+.+.|++++.-.
T Consensus 75 ~~~t~GpG~~N~--~~gi~~A~~~~~Pvl~i~g~ 106 (557)
T PRK08199 75 CFVTRGPGATNA--SIGVHTAFQDSTPMILFVGQ 106 (557)
T ss_pred EEeCCCccHHHH--HHHHHHHhhcCCCEEEEecC
Confidence 344456554433 35699999999999999864
No 396
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=20.77 E-value=3.2e+02 Score=26.38 Aligned_cols=77 Identities=17% Similarity=0.126 Sum_probs=45.4
Q ss_pred ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhh----hhhc--CCCcEEEECCC------C--Cc-------cchHHHHH
Q 038651 50 VGAYVVTFIVGRLSIINAIAGAYSENFPAATIT----ALLK--AVKPAMIGGPK------L--SV-------SKATIAFV 108 (324)
Q Consensus 50 ~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It----~L~~--AkrPvIl~G~g------~--~~-------~~a~~~l~ 108 (324)
.-+.++--|-|..|+++.|...-..++..+++- .|.. +++ -+++|.. + .. ....++++
T Consensus 18 ~~i~viGvGg~G~n~v~~l~~~~~~~~~~iainTD~~~L~~~~a~~-ki~iG~~~t~G~GaG~~~~~G~~~aee~~d~Ir 96 (349)
T TIGR00065 18 AKIKVIGVGGGGNNTVNRMLEEGVEGVEFIAINTDAQHLKTTKADK-KILIGKKLTRGLGAGGNPEIGRKAAEESRDEIR 96 (349)
T ss_pred CeEEEEEeCCcHHHHHHHHHHcCCCceEEEEEECCHHHHhcCCCCe-EEEcCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 334455556666899999988766666666662 1332 222 2444332 1 11 12245677
Q ss_pred HHHHHhCCcEEecCCCCCc
Q 038651 109 ELADACGYAFAVMPSAKGM 127 (324)
Q Consensus 109 ~lae~l~~Pv~tt~~gkg~ 127 (324)
+..|....-+++..+|.|.
T Consensus 97 ~~le~~D~vfI~aglGGGT 115 (349)
T TIGR00065 97 KLLEGADMVFITAGMGGGT 115 (349)
T ss_pred HHHhCCCEEEEEEeccCcc
Confidence 7778788888887777766
No 397
>cd02766 MopB_3 The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members belong to the molybdopterin_binding (MopB) superfamily of proteins
Probab=20.77 E-value=1.1e+02 Score=30.84 Aligned_cols=122 Identities=12% Similarity=0.051 Sum_probs=61.8
Q ss_pred eEeecCchHHHHHHHHHHhhhc---CceEEEEeCCcchHHHHHHHH-HHhhcCCcchhhhhhhcCCCcEEEECCCCCccc
Q 038651 27 RDVGCCNELNAGYAADGSARAR---AVGAYVVTFIVGRLSIINAIA-GAYSENFPAATITALLKAVKPAMIGGPKLSVSK 102 (324)
Q Consensus 27 ~~i~~rhE~~A~~aAdgYaR~t---g~gv~~~t~GpG~~N~~tgla-~A~~d~~Pvl~It~L~~AkrPvIl~G~g~~~~~ 102 (324)
+|...--|++=...|+...++. |+..+...++.|..+...-.+ ..+.. .+. +.+ + -+.-+.
T Consensus 69 ~~~~isWdeAl~~ia~~l~~i~~~~G~~si~~~~~~g~~~~~~~~~~~~~~~--------~~G-s~~--~-~~~~c~--- 133 (501)
T cd02766 69 QWERISWDEALDTIAAKLKEIKAEYGPESILPYSYAGTMGLLQRAARGRFFH--------ALG-ASE--L-RGTICS--- 133 (501)
T ss_pred ceEEecHHHHHHHHHHHHHHHHHhhCCcEEEEecccCCccccchHHHHHHHH--------hCC-CCC--C-CCCccH---
Confidence 5777888888889999888764 643334445555433332222 11111 111 111 1 121111
Q ss_pred hHHHHHHHHHHhCCcEEecCCCCCc-cccCCcEEEEEcCccCCccccccccc----CCCC-EEEEcCCccccc
Q 038651 103 ATIAFVELADACGYAFAVMPSAKGM-IVEFADAYIFVESIFNDYSSVGYSLL----LNKK-AILMQPDRIVVA 169 (324)
Q Consensus 103 a~~~l~~lae~l~~Pv~tt~~gkg~-~l~~aDlvl~lG~~~~~~~t~~~~~~----~~~~-iI~id~d~~~i~ 169 (324)
. .....+...+|.+. +... -+.+||+||++|+...+.....+... .+.. +|.||+...+..
T Consensus 134 ~-~~~~~~~~~~G~~~-----~~~~~d~~~ad~il~~G~Np~~s~p~~~~~~~~a~~~GaklivvDPr~t~ta 200 (501)
T cd02766 134 G-AGIEAQKYDFGASL-----GNDPEDMVNADLIVIWGINPAATNIHLMRIIQEARKRGAKVVVIDPYRTATA 200 (501)
T ss_pred H-HHHHHHHhhcCCCC-----CCCHHHHhcCCEEEEECCChhhhchhHHHHHHHHHHCCCEEEEECCCCCccH
Confidence 1 11222333344432 1111 56899999999999755332222211 1233 999998876553
No 398
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=20.67 E-value=1.3e+02 Score=34.00 Aligned_cols=46 Identities=11% Similarity=0.115 Sum_probs=39.7
Q ss_pred cCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhh
Q 038651 207 SGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIE 252 (324)
Q Consensus 207 ~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~ 252 (324)
.++.-|+...||+.|.-+.+.-|-.|+-.+.+++++|+.|+.=.|-
T Consensus 511 ~~~~hv~aniGDgTffHSG~~alr~AV~~~~nit~kIL~N~avAMT 556 (1186)
T PRK13029 511 SRRRHVFQNLGDGTYFHSGLLAIRQAIAAGVNITYKILYNDAVAMT 556 (1186)
T ss_pred CCCCCEEEEeccccchhcCHHHHHHHHhcCCCEEEEEEeCcchhcc
Confidence 4456788999999987777788999999999999999999987763
No 399
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=20.48 E-value=2.8e+02 Score=28.61 Aligned_cols=85 Identities=9% Similarity=0.028 Sum_probs=48.0
Q ss_pred eEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhh-hhCC-------CCCCC--CCCCHHHHHHHHHHHHH
Q 038651 211 AVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVE-IHDG-------PYNVI--ENWNYTGLVEAFQNAIE 280 (324)
Q Consensus 211 ~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~-~~~~-------~~~~l--~~~df~~lA~a~G~al~ 280 (324)
++++-.|-+..... .=|.||..-+.|+++|.-.=....+.+. +|+. +++.. .--+-..+.+.+--|++
T Consensus 67 V~~~tsGPGatN~~--tgla~A~~d~~Pll~itGqv~~~~~g~~afQe~D~~~l~~p~tk~~~~v~~~~~ip~~i~~Af~ 144 (550)
T COG0028 67 VCLVTSGPGATNLL--TGLADAYMDSVPLLAITGQVPTSLIGTDAFQEVDQVGLFRPITKYNFEVRSPEDIPEVVARAFR 144 (550)
T ss_pred EEEECCCCcHHHHH--HHHHHHHhcCCCEEEEeCCccccccCcchhhhcchhhHhhhhheeEEEeCCHHHHHHHHHHHHH
Confidence 44455666655433 5599999999999999873222222221 1211 01000 01233455555544666
Q ss_pred HhHHhCCCCeEEEEEEec
Q 038651 281 TAAVEKKDCLCFIEAIVH 298 (324)
Q Consensus 281 ~a~~~~~~~p~lIeV~id 298 (324)
.|. ....||++||+..|
T Consensus 145 ~A~-sgrpGpv~i~iP~D 161 (550)
T COG0028 145 IAL-SGRPGPVVVDLPKD 161 (550)
T ss_pred HHh-cCCCceEEEEcChh
Confidence 664 35668999999876
No 400
>PRK15404 leucine ABC transporter subunit substrate-binding protein LivK; Provisional
Probab=20.46 E-value=6.9e+02 Score=23.71 Aligned_cols=55 Identities=7% Similarity=-0.114 Sum_probs=32.3
Q ss_pred CCeEeecCchHHHHHHHHHHhhhcC--ceEEEEeCCcchHHHHHHHHHHhhcCCcchhh
Q 038651 25 GSRDVGCCNELNAGYAADGSARARA--VGAYVVTFIVGRLSIINAIAGAYSENFPAATI 81 (324)
Q Consensus 25 ~i~~i~~rhE~~A~~aAdgYaR~tg--~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~I 81 (324)
.|++|..=++....-+...+.|+-. +-+++...+.+.+..+ .--+-..++|+|.-
T Consensus 66 ~ielv~~D~~~~p~~a~~~~~~Li~~~V~~iiG~~~s~~~~a~--~~~~~~~~ip~i~~ 122 (369)
T PRK15404 66 KLEGVEYDDACDPKQAVAVANKVVNDGIKYVIGHLCSSSTQPA--SDIYEDEGILMITP 122 (369)
T ss_pred EEEEEeecCCCCHHHHHHHHHHHHhCCceEEEcCCCchhHHHh--HHHHHHCCCeEEec
Confidence 3788888877777777777777643 3333332223333333 33345677888764
No 401
>cd06331 PBP1_AmiC_like Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF). This group includes the type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two t
Probab=20.45 E-value=6.5e+02 Score=23.14 Aligned_cols=55 Identities=11% Similarity=-0.077 Sum_probs=37.7
Q ss_pred CCeEeecCchHHHHHHHHHHhhhc---CceEEEEeCCcchHHHHHHHHHHhhcCCcchhh
Q 038651 25 GSRDVGCCNELNAGYAADGSARAR---AVGAYVVTFIVGRLSIINAIAGAYSENFPAATI 81 (324)
Q Consensus 25 ~i~~i~~rhE~~A~~aAdgYaR~t---g~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~I 81 (324)
.|+++.+-++....-+...+-|+- |+-+++...+.+.+..+..+++. .++|+|..
T Consensus 40 ~i~l~~~D~~~~p~~a~~~a~~Li~~~~V~aiiG~~~s~~~~a~~~~~~~--~~vp~i~~ 97 (333)
T cd06331 40 PLELVVEDPASDPAFAAKAARRLIRDDKVDAVFGCYTSASRKAVLPVVER--GRGLLFYP 97 (333)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHhccCCcEEEecccHHHHHHHHHHHHh--cCceEEeC
Confidence 389999999988888888888864 34455555555555666655553 47787754
No 402
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=20.41 E-value=2.3e+02 Score=28.92 Aligned_cols=84 Identities=11% Similarity=0.001 Sum_probs=43.6
Q ss_pred EEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhh-hhC--C--CCCCCC-----CCCHHHHHHHHHHHHHHh
Q 038651 213 IAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVE-IHD--G--PYNVIE-----NWNYTGLVEAFQNAIETA 282 (324)
Q Consensus 213 v~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~-~~~--~--~~~~l~-----~~df~~lA~a~G~al~~a 282 (324)
++-.|.+...+ +.-|.+|...++|++++.-.-......+. +|+ . -+..+. -.+-..+.+.+--|++.|
T Consensus 81 ~~t~GpG~~N~--l~gl~~A~~~~~Pvl~i~G~~~~~~~~~~~~q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~a 158 (564)
T PRK08155 81 MACSGPGATNL--VTAIADARLDSIPLVCITGQVPASMIGTDAFQEVDTYGISIPITKHNYLVRDIEELPQVISDAFRIA 158 (564)
T ss_pred EECCCCcHHHH--HHHHHHHHhcCCCEEEEeccCCcccccCCCccccchhhhhhccceEEEEcCCHHHHHHHHHHHHHHH
Confidence 33445554433 35699999999999999865443321111 111 0 000000 012333333333366555
Q ss_pred HHhCCCCeEEEEEEecC
Q 038651 283 AVEKKDCLCFIEAIVHK 299 (324)
Q Consensus 283 ~~~~~~~p~lIeV~id~ 299 (324)
. ....||+.|||..|-
T Consensus 159 ~-~~~~GPV~i~iP~Dv 174 (564)
T PRK08155 159 Q-SGRPGPVWIDIPKDV 174 (564)
T ss_pred h-cCCCCcEEEEcCHhH
Confidence 3 234699999998763
No 403
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=20.36 E-value=1.3e+02 Score=31.97 Aligned_cols=49 Identities=10% Similarity=0.148 Sum_probs=34.7
Q ss_pred EecCCCeEEEecCchHHhhh-HHHHHHHHHHhCCCeEEEEEeCCchhhhhh
Q 038651 205 MLSGNTAVIAETGDSWFNCQ-KDVDVSTMLRCEQKNIIFLINNGNYTIEVE 254 (324)
Q Consensus 205 ~~~~~~~vv~d~G~~~~~~~-~~qEL~Ta~r~~lpviivV~NN~~yg~~~~ 254 (324)
...++.-||+.+||+++... .+.-|-.+...+-+ .|||+||+...+-+.
T Consensus 207 l~g~~~~vvaVIGDGaltgGma~EaLN~~g~~~~~-livILNDN~mSi~~n 256 (701)
T PLN02225 207 IKGKRDRVVAVIDNATITAGQAYEAMSNAGYLDSN-MIVILNDSRHSLHPN 256 (701)
T ss_pred hcCCCCcEEEEEcCcchhhhhHHHHHhhhhccCCC-EEEEEeCCCCCCCCC
Confidence 44566778899999986433 23566677766666 678899998877655
No 404
>PRK13018 cell division protein FtsZ; Provisional
Probab=20.23 E-value=2.7e+02 Score=27.33 Aligned_cols=32 Identities=19% Similarity=-0.048 Sum_probs=22.6
Q ss_pred ceEEEEeCCcchHHHHHHHHHHhhcCCcchhh
Q 038651 50 VGAYVVTFIVGRLSIINAIAGAYSENFPAATI 81 (324)
Q Consensus 50 ~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~I 81 (324)
.-+.++-.|-|..|+++-|...-..++-.++|
T Consensus 29 ~~I~ViGvGGaG~N~v~~m~~~~~~~v~~iai 60 (378)
T PRK13018 29 PKIVVVGCGGAGNNTINRLYEIGIEGAETIAI 60 (378)
T ss_pred CeEEEEEeCCcHHHHHHHHHHcCCCCceEEEE
Confidence 44445555666689999998776667777777
No 405
>cd06344 PBP1_ABC_ligand_binding_like_9 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine/isoleucine/valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=20.23 E-value=6.8e+02 Score=23.00 Aligned_cols=57 Identities=7% Similarity=-0.178 Sum_probs=33.9
Q ss_pred CCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhh
Q 038651 25 GSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATI 81 (324)
Q Consensus 25 ~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~I 81 (324)
.|++|..-++....-+.....|+-. -+|..+..+.+...++..+--+-..++|+|..
T Consensus 39 ~ielv~~D~~~~p~~a~~~a~~li~~~~v~aiiG~~~s~~~~a~~~~~~~~~ip~i~~ 96 (332)
T cd06344 39 LLKVVIANDGNDPEIAKKVADELVKDPEILGVVGHYSSDATLAALDIYQKAKLVLISP 96 (332)
T ss_pred eEEEEEECCCCChHHHHHHHHHHhcccCceEEEcCCCcHHHHHHHHHHhhcCceEEcc
Confidence 3889988888877777777777654 45544433333223333233344568888765
No 406
>PRK15138 aldehyde reductase; Provisional
Probab=20.11 E-value=1.4e+02 Score=29.07 Aligned_cols=51 Identities=8% Similarity=-0.036 Sum_probs=29.0
Q ss_pred CCCcEEEECCCC-CccchHHHHHHHHHHhCCcEEecCCCCC----c--------c--ccCCcEEEEEcC
Q 038651 87 AVKPAMIGGPKL-SVSKATIAFVELADACGYAFAVMPSAKG----M--------I--VEFADAYIFVES 140 (324)
Q Consensus 87 AkrPvIl~G~g~-~~~~a~~~l~~lae~l~~Pv~tt~~gkg----~--------~--l~~aDlvl~lG~ 140 (324)
.||++|+.|.+. ...+..+.+.+..+ ++-+. .+.+-. . . -.++|+||+||.
T Consensus 29 ~~~~livt~~~~~~~~g~~~~v~~~L~--~~~~~-~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGG 94 (387)
T PRK15138 29 DARVLITYGGGSVKKTGVLDQVLDALK--GMDVL-EFGGIEPNPTYETLMKAVKLVREEKITFLLAVGG 94 (387)
T ss_pred CCeEEEECCCchHHhcCcHHHHHHHhc--CCeEE-EECCccCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 478888887553 33555566665554 44332 222210 0 2 247899999996
Done!