Query 038651
Match_columns 324
No_of_seqs 221 out of 1176
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 23:09:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038651.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038651hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wvg_A PDC, pyruvate decarboxy 100.0 1.8E-54 6.1E-59 438.3 28.6 312 7-322 22-564 (568)
2 2vbi_A Pyruvate decarboxylase; 100.0 4.4E-54 1.5E-58 435.3 28.3 308 7-319 22-553 (566)
3 2vk8_A Pyruvate decarboxylase 100.0 1.6E-54 5.5E-59 438.1 23.6 310 7-318 23-561 (563)
4 1ovm_A Indole-3-pyruvate decar 100.0 8.3E-54 2.8E-58 431.9 20.0 308 7-318 24-551 (552)
5 3hww_A 2-succinyl-5-enolpyruvy 100.0 2.2E-53 7.6E-58 429.4 19.7 303 7-315 27-555 (556)
6 3eya_A Pyruvate dehydrogenase 100.0 2.4E-53 8.2E-58 428.5 18.1 286 7-303 22-533 (549)
7 2nxw_A Phenyl-3-pyruvate decar 100.0 5.3E-53 1.8E-57 427.5 18.8 308 7-319 40-562 (565)
8 2vbf_A Branched-chain alpha-ke 100.0 3.4E-52 1.2E-56 421.8 22.8 308 7-317 44-569 (570)
9 4feg_A Pyruvate oxidase; carba 100.0 4.1E-52 1.4E-56 423.9 21.0 287 7-300 30-547 (603)
10 1ybh_A Acetolactate synthase, 100.0 6.5E-52 2.2E-56 421.4 22.0 290 7-302 31-561 (590)
11 1t9b_A Acetolactate synthase, 100.0 1.4E-51 4.8E-56 424.6 21.8 290 8-301 102-639 (677)
12 1ozh_A ALS, acetolactate synth 100.0 2.4E-51 8.2E-56 415.4 22.7 293 7-307 30-550 (566)
13 1q6z_A BFD, BFDC, benzoylforma 100.0 5.7E-51 1.9E-55 409.3 24.5 288 7-301 21-527 (528)
14 3lq1_A 2-succinyl-5-enolpyruvy 100.0 1.2E-51 4.2E-56 418.5 17.5 297 7-309 30-570 (578)
15 2uz1_A Benzaldehyde lyase; thi 100.0 3.1E-51 1.1E-55 414.2 19.5 296 7-307 23-554 (563)
16 2pgn_A Cyclohexane-1,2-dione h 100.0 4.4E-51 1.5E-55 415.3 19.1 292 7-303 23-551 (589)
17 2x7j_A 2-succinyl-5-enolpyruvy 100.0 8.3E-51 2.8E-55 414.3 16.4 307 7-317 50-598 (604)
18 2pan_A Glyoxylate carboligase; 100.0 1.9E-50 6.6E-55 412.4 18.7 292 7-302 46-583 (616)
19 2c31_A Oxalyl-COA decarboxylas 100.0 6.7E-50 2.3E-54 404.9 19.6 299 7-310 29-558 (568)
20 2q28_A Oxalyl-COA decarboxylas 100.0 7.2E-50 2.5E-54 404.2 17.4 294 7-305 27-550 (564)
21 1v5e_A Pyruvate oxidase; oxido 100.0 3.6E-49 1.2E-53 401.3 20.7 286 7-301 23-541 (590)
22 2iht_A Carboxyethylarginine sy 100.0 2.6E-48 8.9E-53 393.6 21.4 288 8-304 32-565 (573)
23 3cf4_G Acetyl-COA decarboxylas 99.5 3.5E-15 1.2E-19 128.1 4.5 82 84-165 31-143 (170)
24 1ytl_A Acetyl-COA decarboxylas 99.5 1.4E-15 4.7E-20 131.1 0.8 80 82-163 30-143 (174)
25 2c42_A Pyruvate-ferredoxin oxi 99.0 2E-10 6.8E-15 124.7 7.9 89 209-300 953-1071(1231)
26 1umd_A E1-alpha, 2-OXO acid de 98.9 1.1E-09 3.9E-14 104.7 4.3 86 207-299 164-269 (367)
27 1w85_A Pyruvate dehydrogenase 98.7 9E-09 3.1E-13 98.5 4.7 87 208-299 163-267 (368)
28 1qs0_A 2-oxoisovalerate dehydr 98.6 3E-08 1E-12 96.0 6.5 87 208-299 202-307 (407)
29 2bfd_A 2-oxoisovalerate dehydr 98.6 2.5E-08 8.5E-13 96.4 4.1 87 208-299 183-287 (400)
30 1yd7_A 2-keto acid:ferredoxin 98.5 3.7E-08 1.3E-12 95.1 3.5 75 7-82 42-120 (395)
31 3uk1_A Transketolase; structur 98.5 1.7E-07 5.8E-12 96.6 7.7 83 209-299 187-287 (711)
32 3l84_A Transketolase; TKT, str 98.5 2.1E-07 7E-12 94.9 7.9 83 209-299 143-242 (632)
33 2e6k_A Transketolase; structur 98.5 2.2E-07 7.4E-12 95.2 7.7 84 208-299 149-250 (651)
34 3kom_A Transketolase; rossmann 98.4 3E-07 1E-11 94.2 8.1 83 209-299 148-249 (663)
35 3mos_A Transketolase, TK; thia 98.4 2.9E-07 9.9E-12 93.6 5.9 86 209-299 144-242 (616)
36 3m49_A Transketolase; alpha-be 98.4 6.6E-07 2.2E-11 92.0 8.4 84 209-299 172-273 (690)
37 2r8o_A Transketolase 1, TK 1; 98.4 5.7E-07 2E-11 92.3 7.9 85 209-300 146-248 (669)
38 1itz_A Transketolase; calvin c 98.3 8.6E-07 2.9E-11 91.1 7.8 85 208-299 158-261 (675)
39 2o1s_A 1-deoxy-D-xylulose-5-ph 98.3 7.9E-07 2.7E-11 90.6 7.1 88 208-299 142-284 (621)
40 2o1x_A 1-deoxy-D-xylulose-5-ph 98.3 3.2E-07 1.1E-11 93.6 4.1 91 207-301 143-291 (629)
41 1gpu_A Transketolase; transfer 98.3 1.2E-06 4.1E-11 90.1 8.4 84 209-299 148-250 (680)
42 2ozl_A PDHE1-A type I, pyruvat 98.2 3E-06 1E-10 80.8 8.8 89 208-299 161-263 (365)
43 1r9j_A Transketolase; domains, 98.0 8.3E-06 2.8E-10 83.7 8.4 86 208-299 147-250 (673)
44 2yic_A 2-oxoglutarate decarbox 97.4 1.9E-05 6.6E-10 82.9 -0.0 89 208-299 276-384 (868)
45 3rim_A Transketolase, TK; TPP, 97.3 0.00037 1.3E-08 71.7 7.1 85 209-299 168-269 (700)
46 2xt6_A 2-oxoglutarate decarbox 96.3 0.0022 7.5E-08 69.1 4.1 89 208-299 521-629 (1113)
47 2jgd_A 2-oxoglutarate dehydrog 96.3 0.00087 3E-08 70.9 1.0 89 208-299 347-456 (933)
48 2qtc_A Pyruvate dehydrogenase 91.5 0.17 6E-06 53.2 5.2 44 208-251 220-264 (886)
49 2c42_A Pyruvate-ferredoxin oxi 90.8 0.69 2.3E-05 50.5 9.2 113 8-124 26-172 (1231)
50 1pno_A NAD(P) transhydrogenase 87.9 0.22 7.6E-06 41.6 2.1 59 84-142 20-109 (180)
51 1d4o_A NADP(H) transhydrogenas 87.6 0.25 8.7E-06 41.4 2.3 59 84-142 19-108 (184)
52 2fsv_C NAD(P) transhydrogenase 87.0 0.26 8.9E-06 42.1 2.1 59 84-142 43-132 (203)
53 1djl_A Transhydrogenase DIII; 86.9 0.25 8.6E-06 42.3 1.9 59 84-142 42-131 (207)
54 2bru_C NAD(P) transhydrogenase 82.8 0.48 1.6E-05 39.7 1.7 59 84-142 27-116 (186)
55 1e2b_A Enzyme IIB-cellobiose; 82.7 0.94 3.2E-05 34.8 3.4 55 88-143 4-61 (106)
56 1tvm_A PTS system, galactitol- 80.6 2.2 7.5E-05 33.0 4.8 55 88-143 22-80 (113)
57 3nbm_A PTS system, lactose-spe 79.7 1.7 5.8E-05 33.6 3.9 55 87-142 6-63 (108)
58 3glr_A NAD-dependent deacetyla 65.9 3.7 0.00013 37.2 3.2 39 128-166 194-234 (285)
59 2l2q_A PTS system, cellobiose- 63.7 9.7 0.00033 28.9 4.8 54 89-143 6-62 (109)
60 1o97_D Electron transferring f 62.7 15 0.00052 33.7 6.8 79 84-166 199-292 (320)
61 3bfj_A 1,3-propanediol oxidore 58.8 12 0.00042 34.9 5.5 55 87-141 33-102 (387)
62 2hjh_A NAD-dependent histone d 56.8 5.9 0.0002 37.0 2.9 41 128-168 252-294 (354)
63 3dm5_A SRP54, signal recogniti 55.5 29 0.00099 33.3 7.6 64 50-125 100-165 (443)
64 3czc_A RMPB; alpha/beta sandwi 55.0 4.3 0.00015 31.1 1.4 54 88-142 19-77 (110)
65 3riy_A NAD-dependent deacetyla 54.3 4 0.00014 36.7 1.2 42 128-169 209-253 (273)
66 1q1a_A HST2 protein; ternary c 54.0 6.5 0.00022 35.5 2.6 39 129-167 209-249 (289)
67 1j8f_A SIRT2, sirtuin 2, isofo 53.3 7.4 0.00025 35.9 2.9 41 128-168 217-259 (323)
68 1q14_A HST2 protein; histone d 53.0 8.6 0.00029 36.0 3.3 39 129-167 217-257 (361)
69 1s5p_A NAD-dependent deacetyla 52.3 3.4 0.00012 36.2 0.4 42 128-169 164-208 (235)
70 2kyr_A Fructose-like phosphotr 51.2 21 0.00073 27.5 4.8 68 95-166 15-91 (111)
71 4iao_A NAD-dependent histone d 49.7 8.2 0.00028 37.7 2.6 40 128-167 390-431 (492)
72 1rrm_A Lactaldehyde reductase; 46.9 10 0.00035 35.4 2.8 55 87-141 31-98 (386)
73 3pki_A NAD-dependent deacetyla 46.5 6.1 0.00021 37.0 1.1 42 128-169 203-247 (355)
74 3k35_A NAD-dependent deacetyla 46.1 5.7 0.00019 36.6 0.8 42 128-169 203-247 (318)
75 1j8m_F SRP54, signal recogniti 45.5 60 0.002 29.1 7.7 56 55-122 105-160 (297)
76 3kl4_A SRP54, signal recogniti 44.6 43 0.0015 32.0 6.8 59 55-125 104-162 (433)
77 2r48_A Phosphotransferase syst 44.1 23 0.00079 27.1 3.9 59 102-165 20-86 (106)
78 3ox4_A Alcohol dehydrogenase 2 43.6 7.8 0.00027 36.4 1.4 55 87-141 31-98 (383)
79 1yc5_A NAD-dependent deacetyla 43.4 6.5 0.00022 34.6 0.7 42 128-169 177-221 (246)
80 1ma3_A SIR2-AF2, transcription 42.5 6.7 0.00023 34.7 0.7 42 128-169 180-224 (253)
81 1m2k_A Silent information regu 42.1 6.5 0.00022 34.7 0.6 42 128-169 174-218 (249)
82 2r4q_A Phosphotransferase syst 41.4 23 0.00079 27.1 3.5 60 101-165 19-86 (106)
83 1vkr_A Mannitol-specific PTS s 41.3 26 0.0009 27.4 4.0 54 86-142 12-69 (125)
84 2ioj_A Hypothetical protein AF 41.3 20 0.00069 28.2 3.4 33 88-123 74-106 (139)
85 3u31_A SIR2A, transcriptional 40.9 6.5 0.00022 35.7 0.4 42 128-169 213-257 (290)
86 1efv_A Electron transfer flavo 40.8 67 0.0023 29.2 7.3 79 84-166 194-286 (315)
87 1vlj_A NADH-dependent butanol 40.8 25 0.00086 33.1 4.5 54 87-141 43-111 (407)
88 4a1f_A DNAB helicase, replicat 40.0 25 0.00087 32.4 4.3 37 103-139 184-239 (338)
89 1vma_A Cell division protein F 39.7 76 0.0026 28.5 7.5 57 55-123 111-167 (306)
90 3o1l_A Formyltetrahydrofolate 39.5 1.3E+02 0.0044 27.2 8.9 93 52-165 108-213 (302)
91 1efp_A ETF, protein (electron 39.0 67 0.0023 29.1 6.9 79 84-166 189-281 (307)
92 1vkm_A Conserved hypothetical 37.7 10 0.00034 34.4 1.0 94 28-121 71-181 (297)
93 1o2d_A Alcohol dehydrogenase, 37.0 31 0.0011 32.0 4.4 54 88-141 41-108 (371)
94 2ffh_A Protein (FFH); SRP54, s 36.5 1.2E+02 0.004 28.8 8.5 57 55-123 105-161 (425)
95 1jkx_A GART;, phosphoribosylgl 36.3 53 0.0018 28.0 5.5 91 53-165 4-111 (212)
96 2f62_A Nucleoside 2-deoxyribos 35.6 40 0.0014 27.6 4.4 52 88-140 9-76 (161)
97 3tqr_A Phosphoribosylglycinami 35.3 1.2E+02 0.004 26.0 7.5 95 52-165 8-115 (215)
98 4ex8_A ALNA; alpha/beta/alpha- 35.0 11 0.00037 34.5 0.8 78 44-121 94-191 (316)
99 3lou_A Formyltetrahydrofolate 34.5 1.2E+02 0.004 27.3 7.7 93 51-164 97-202 (292)
100 1ybh_A Acetolactate synthase, 34.4 95 0.0032 30.4 7.7 83 212-299 79-173 (590)
101 2uz1_A Benzaldehyde lyase; thi 34.2 83 0.0028 30.6 7.2 77 212-298 70-164 (563)
102 3uhj_A Probable glycerol dehyd 33.9 23 0.00079 33.2 3.0 52 88-141 53-116 (387)
103 3lyh_A Cobalamin (vitamin B12) 32.7 28 0.00097 26.7 2.9 37 87-123 4-43 (126)
104 2xxa_A Signal recognition part 31.5 1.2E+02 0.0042 28.7 7.7 58 55-123 107-164 (433)
105 1ozh_A ALS, acetolactate synth 31.2 91 0.0031 30.4 7.0 82 212-298 77-170 (566)
106 3n0v_A Formyltetrahydrofolate 31.1 1.5E+02 0.0051 26.5 7.8 92 52-164 93-197 (286)
107 3da8_A Probable 5'-phosphoribo 29.8 66 0.0023 27.6 5.0 94 52-165 15-121 (215)
108 2pan_A Glyoxylate carboligase; 29.3 1.2E+02 0.004 29.9 7.5 82 213-299 96-189 (616)
109 2iht_A Carboxyethylarginine sy 29.2 1.4E+02 0.0047 29.1 7.9 83 212-299 77-172 (573)
110 3ipc_A ABC transporter, substr 29.1 1.3E+02 0.0043 26.5 7.1 92 26-119 44-170 (356)
111 3hbm_A UDP-sugar hydrolase; PS 29.0 1E+02 0.0036 27.3 6.4 95 25-140 136-234 (282)
112 3eya_A Pyruvate dehydrogenase 28.1 81 0.0028 30.6 6.0 81 212-298 70-162 (549)
113 3aek_A Light-independent proto 28.1 1.1E+02 0.0037 28.9 6.7 54 87-142 182-239 (437)
114 2f9i_A Acetyl-coenzyme A carbo 27.3 88 0.003 28.6 5.7 93 42-139 109-227 (327)
115 2v3c_C SRP54, signal recogniti 27.1 72 0.0025 30.3 5.2 56 55-122 106-161 (432)
116 1t9b_A Acetolactate synthase, 26.7 1.1E+02 0.0038 30.7 6.8 83 211-298 148-242 (677)
117 1vi6_A 30S ribosomal protein S 26.0 1.4E+02 0.0048 25.5 6.4 53 88-143 68-127 (208)
118 2px0_A Flagellar biosynthesis 25.6 96 0.0033 27.6 5.6 61 50-121 107-167 (296)
119 3qbe_A 3-dehydroquinate syntha 25.5 71 0.0024 29.7 4.8 53 87-141 43-113 (368)
120 3fdi_A Uncharacterized protein 25.4 55 0.0019 27.3 3.7 32 88-120 5-36 (201)
121 2xhz_A KDSD, YRBH, arabinose 5 24.9 46 0.0016 26.8 3.0 57 84-141 45-106 (183)
122 2xws_A Sirohydrochlorin cobalt 24.7 49 0.0017 25.3 3.0 37 88-124 3-44 (133)
123 2ozl_B PDHE1-B, pyruvate dehyd 24.3 59 0.002 29.8 3.9 55 26-81 62-127 (341)
124 1w85_B Pyruvate dehydrogenase 23.8 54 0.0018 29.7 3.5 55 26-81 50-115 (324)
125 3i9v_3 NADH-quinone oxidoreduc 23.7 73 0.0025 32.7 4.8 53 89-143 340-403 (783)
126 3tqq_A Methionyl-tRNA formyltr 23.0 1.2E+02 0.004 27.5 5.6 36 106-141 49-90 (314)
127 2m1z_A LMO0427 protein; homolo 22.9 50 0.0017 25.2 2.6 67 94-165 11-87 (106)
128 4ds3_A Phosphoribosylglycinami 22.9 3.3E+02 0.011 22.9 8.2 95 52-165 10-118 (209)
129 2f9y_A Acetyl-COA carboxylase, 22.3 1E+02 0.0035 28.3 5.1 93 42-139 123-241 (339)
130 2q28_A Oxalyl-COA decarboxylas 22.2 2.2E+02 0.0076 27.5 7.9 82 212-298 74-169 (564)
131 2r8o_A Transketolase 1, TK 1; 21.9 66 0.0023 32.4 4.0 54 26-80 402-457 (669)
132 3fxa_A SIS domain protein; str 21.7 59 0.002 26.7 3.1 57 84-141 41-102 (201)
133 1umd_B E1-beta, 2-OXO acid deh 21.5 78 0.0027 28.5 4.1 55 26-81 51-116 (324)
134 3okf_A 3-dehydroquinate syntha 21.3 98 0.0033 29.0 4.8 55 86-141 61-133 (390)
135 1jq5_A Glycerol dehydrogenase; 20.7 53 0.0018 30.2 2.8 52 88-140 32-95 (370)
136 3hh1_A Tetrapyrrole methylase 20.6 1.1E+02 0.0036 23.1 4.1 31 212-242 84-114 (117)
137 3lop_A Substrate binding perip 20.6 2.8E+02 0.0095 24.3 7.7 93 26-119 47-173 (364)
138 3q0i_A Methionyl-tRNA formyltr 20.5 1.1E+02 0.0039 27.7 5.0 36 106-141 54-95 (318)
139 1oj7_A Hypothetical oxidoreduc 20.4 60 0.002 30.4 3.1 52 88-141 51-116 (408)
140 1tjn_A Sirohydrochlorin cobalt 20.2 72 0.0025 25.5 3.2 36 89-124 25-65 (156)
141 4gim_A Pseudouridine-5'-phosph 20.1 20 0.00069 33.0 -0.2 94 28-121 96-211 (335)
No 1
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=100.00 E-value=1.8e-54 Score=438.34 Aligned_cols=312 Identities=40% Similarity=0.625 Sum_probs=255.3
Q ss_pred CcCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcCceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh--
Q 038651 7 SSSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARAVGAYVVTFIVGRLSIINAIAGAYSENFPAATITA-- 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~-- 83 (324)
..+||+ +++|+|+|.++++|++|.+|||++|+||||||||+||+|||++|+|||++|++|||++||.|++|||+||+
T Consensus 22 fg~PG~~~~~l~~al~~~~~i~~i~~~~E~~Aa~~A~Gyar~tg~~v~~~TsGpG~~N~~~gia~A~~~~vPll~itg~~ 101 (568)
T 2wvg_A 22 FAVAGDYNLVLLDNLLLNKNMEQVYCCNELNCGFSAEGYARAKGAAAAVVTYSVGALSAFDAIGGAYAENLPVILISGAP 101 (568)
T ss_dssp EECCCTTTHHHHHHHHTCTTSEEEECSSHHHHHHHHHHHHHHHSCEEEEECTTTTHHHHHHHHHHHHHTTCCEEEEEEEC
T ss_pred EeCCCCccHHHHHHHhccCCceEeccCcHHHHHHHHHHHHHhhCCeEEEEeCCCCHHHHHHHHHHHhhhCCCEEEEeCCC
Confidence 368999 99999999876689999999999999999999999999999999999999999999999999999999942
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 102 ~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~A~~~~GPV~l~iP~dv~~~~~~~~~~~ 181 (568)
T 2wvg_A 102 NNNDHAAGHVLHHALGKTDYHYQLEMAKNITAAAEAIYTPEEAPAKIDHVIKTALREKKPVYLEIACNIASMPCAAPGPA 181 (568)
T ss_dssp CGGGTTTTCBCTTSCSSSCCCHHHHHHTTSCSCEEEECSGGGHHHHHHHHHHHHHHHTCCEEEEEEGGGTTSEECEECCT
T ss_pred ChhHhccCcceeeeccccchHHHHHHHHhhEeEEEEeCCHHHHHHHHHHHHHHHHhCCCCEEEEechhHhcCcccCCCcc
Confidence
Q ss_pred ------------------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc------------
Q 038651 84 ------------------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM------------ 127 (324)
Q Consensus 84 ------------------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~------------ 127 (324)
|++||||+|++|+|+.++++.+++++|+|++|+||++|++|||+
T Consensus 182 ~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~kg~~~~~~p~~~G~~ 261 (568)
T 2wvg_A 182 SALFNDEASDEASLNAAVEETLKFIANRDKVAVLVGSKLRAAGAEEAAVKFADALGGAVATMAAAKSFFPEENPHYIGTS 261 (568)
T ss_dssp HHHHCCCCCCHHHHHHHHHHHHHHHTTCCCEEEEECTTTTTTTCHHHHHHHHHHHCCEEEEEGGGTTSSCTTSTTEEEEE
T ss_pred cccccCCCCCccccHHHHHHHHHHHHhCCCCEEEECccccccchHHHHHHHHHHhCCCEEEchhcCccCCCCCCceeccc
Confidence 67899999999999999999999999999999999999999986
Q ss_pred -----------cccCCcEEEEEcCccCCcccccccccCCCC-EEEEcCCccccccCCChh-----hHHHHHHH-------
Q 038651 128 -----------IVEFADAYIFVESIFNDYSSVGYSLLLNKK-AILMQPDRIVVANGLLLP-----NRNTSAYE------- 183 (324)
Q Consensus 128 -----------~l~~aDlvl~lG~~~~~~~t~~~~~~~~~~-iI~id~d~~~i~~~~~~~-----d~l~~~~~------- 183 (324)
++++||+||++|++++++.++.|....+.. +||||+|+.+++ +..+. ++|+++.+
T Consensus 262 ~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~-~~~~~~~~~~~~l~~L~~~l~~~~~ 340 (568)
T 2wvg_A 262 WGEVSYPGVEKTMKEADAVIALAPVFNDYSTTGWTDIPDPKKLVLAEPRSVVVN-GIRFPSVHLKDYLTRLAQKVSKKTG 340 (568)
T ss_dssp CGGGSCTTHHHHHHHCSEEEEESCCCBTTTTTTTTCCCCTTTEEEECSSEEEET-TEEEESCCHHHHHHHHHHHCCCCCH
T ss_pred cCCcCCHHHHHHHHhCCEEEEECCCcccccccccccCCCCCcEEEEeCChhhcC-CeecCCCCHHHHHHHHHHhcccccc
Confidence 457899999999999998887776554444 999999999987 33222 34443321
Q ss_pred h---hhhccC-C---C-----CCCC----------CCCCCCC------------------------E-------------
Q 038651 184 S---YHRIYV-P---H-----GIPL----------KSNAHEP------------------------L------------- 204 (324)
Q Consensus 184 ~---~~~~~~-~---~-----~~~~----------~~~~~~~------------------------l------------- 204 (324)
. |.+... . . .... ...+.+. +
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~G~~~~~~~~~~~~~~~~~~~~~~~g~~G~~l~ 420 (568)
T 2wvg_A 341 ALDFFKSLNAGELKKAAPADPSAPLVNAEIARQVEALLTPNTTVIAETGDSWFNAQRMKLPNGARVEYEMQWGHIGWSVP 420 (568)
T ss_dssp HHHHHHHTTCCSCCCCCCCCTTSBCCHHHHHHHHHTTCCTTEEEEECSSHHHHHHHTCCCCTTCEEECCTTTCCTTTHHH
T ss_pred chhhhhhhhhhcccccccCCCCCccCHHHHHHHHHHhCCCCCEEEEcCcHHHHHHhhcccCCCCeEEeCCCcchhhhHHH
Confidence 1 111100 0 0 0000 0000000 0
Q ss_pred ------EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhhCCCCCCCCCCCHHHHHHHHH--
Q 038651 205 ------MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIHDGPYNVIENWNYTGLVEAFQ-- 276 (324)
Q Consensus 205 ------~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~~~~~~l~~~df~~lA~a~G-- 276 (324)
+..|+..|++.+||++|.+. +|||+|++++++|+++||+||++|++++.+++..|.+++++||.++|++||
T Consensus 421 ~A~G~ala~~~~~vv~i~GDGs~~~~-~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~ 499 (568)
T 2wvg_A 421 AAFGYAVGAPERRNILMVGDGSFQLT-AQEVAQMVRLKLPVIIFLINNYGYTIEVMIHDGPYNNIKNWDYAGLMEVFNGN 499 (568)
T ss_dssp HHHHHHHHCTTSEEEEEEEHHHHHHH-GGGHHHHHHTTCCCEEEEEECSSCHHHHTTSCCGGGCCCCCCHHHHHHHHHCT
T ss_pred HHHHHHHhCCCCcEEEEEcChhHhcc-HHHHHHHHHcCCCcEEEEEECCcceEeeeeccCCCcCCCCCCHHHHHHHhCCC
Confidence 33467888888899988876 599999999999999999999999999987766677888899999999998
Q ss_pred --------H------------HHHHhHHhCC-CCeEEEEEEecCCCCcHHHHHHHHHhhhhcCCCCC
Q 038651 277 --------N------------AIETAAVEKK-DCLCFIEAIVHKDDTGKELLKWGSRVSAANNRPPN 322 (324)
Q Consensus 277 --------~------------al~~a~~~~~-~~p~lIeV~id~~~~~~~~~~~~~~~~~~~~~~~~ 322 (324)
- +|++++ +. ++|+||||++++++.++.+.++.+.++..++.+|+
T Consensus 500 ~~~~~~~~~~~~v~~~~el~~al~~a~--~~~~gp~liev~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (568)
T 2wvg_A 500 GGYDSGAGKGLKAKTGGELAEAIKVAL--ANTDGPTLIECFIGREDCTEELVKWGKRVAAANSRKPV 564 (568)
T ss_dssp TSSSCCCCEEEEESBHHHHHHHHHHHH--HCCSSCEEEEEECCTTCCCHHHHHHHHHHHHHHHCCCC
T ss_pred cccccCCcceEEeCCHHHHHHHHHHHH--hcCCCcEEEEEEcCccccCHHHHHHHHHhHhhccCCcc
Confidence 2 666664 44 89999999999999999999999999888776654
No 2
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=100.00 E-value=4.4e-54 Score=435.31 Aligned_cols=308 Identities=38% Similarity=0.605 Sum_probs=253.7
Q ss_pred CcCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcCceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh--
Q 038651 7 SSSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARAVGAYVVTFIVGRLSIINAIAGAYSENFPAATITA-- 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~-- 83 (324)
..+||+ +++|+|+|.++++|++|.+|||++|+||||||||+||+|||++|+|||++|++|||++||.|++|||+||+
T Consensus 22 fg~PG~~~~~l~~al~~~~~i~~v~~~~E~~Aa~~A~Gyar~tg~~v~~~TsGpG~~N~~~gia~A~~~~vPll~itg~~ 101 (566)
T 2vbi_A 22 FAVAGDYNLVLLDQLLLNKDMKQIYCCNELNCGFSAEGYARSNGAAAAVVTFSVGAISAMNALGGAYAENLPVILISGAP 101 (566)
T ss_dssp EECCCTTTHHHHHHHHTCTTSEEEECSSHHHHHHHHHHHHHHHSCEEEEECTTTTHHHHHHHHHHHHHTTCCEEEEEEEC
T ss_pred EeCCCCccHHHHHHHhcCCCCeEEeeCcHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHHHHHHhhCCCEEEEECCC
Confidence 368999 99999999876689999999999999999999999999999999999999999999999999999999942
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 102 ~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~GPV~l~iP~d~~~~~~~~~~~~ 181 (566)
T 2vbi_A 102 NSNDQGTGHILHHTIGKTDYSYQLEMARQVTCAAESITDAHSAPAKIDHVIRTALRERKPAYLDIACNIASEPCVRPGPV 181 (566)
T ss_dssp CGGGTTTTCBCTTSCSSSCCTHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHHHHHHTCCEEEEEETTTTTSBCCEECCC
T ss_pred ChHHhccCceeeeeccCcchHHHHHHHhhhEeEEEEeCCHHHHHHHHHHHHHHHHhCCCCEEEEechhhcCCeecCCCCC
Confidence
Q ss_pred ------------------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc------------
Q 038651 84 ------------------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM------------ 127 (324)
Q Consensus 84 ------------------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~------------ 127 (324)
|++||||+|++|+|+.++++.+++++|+|++|+||++|++|||.
T Consensus 182 ~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvi~~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~~g~~~~~~p~~~G~~ 261 (566)
T 2vbi_A 182 SSLLSEPEIDHTSLKAAVDATVALLEKSASPVMLLGSKLRAANALAATETLADKLQCAVTIMAAAKGFFPEDHAGFRGLY 261 (566)
T ss_dssp SCSCCCBCCCHHHHHHHHHHHHHHHHTCSCEEEEECTTTTTTTCHHHHHHHHHHHCCEEEEEGGGTTSSCTTSTTEEEEE
T ss_pred cccCCCCCCCcchHHHHHHHHHHHHHhCCCCEEEECcCccccchHHHHHHHHHHhCCCEEEccccCccCCCCCccccccc
Confidence 67799999999999999999999999999999999999999986
Q ss_pred -----------cccCCcEEEEEcCccCCcccccccccCCCC-EEEEcCCccccccCCChh-----hHHHHHHH-------
Q 038651 128 -----------IVEFADAYIFVESIFNDYSSVGYSLLLNKK-AILMQPDRIVVANGLLLP-----NRNTSAYE------- 183 (324)
Q Consensus 128 -----------~l~~aDlvl~lG~~~~~~~t~~~~~~~~~~-iI~id~d~~~i~~~~~~~-----d~l~~~~~------- 183 (324)
++++||+||++|+++.++.++.|....+.. +||||+|+.+++ +..+. ++++++.+
T Consensus 262 ~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~-~~~~~~~~~~~~l~~L~~~l~~~~~ 340 (566)
T 2vbi_A 262 WGEVSNPGVQELVETSDALLCIAPVFNDYSTVGWSAWPKGPNVILAEPDRVTVD-GRAYDGFTLRAFLQALAEKAPARPA 340 (566)
T ss_dssp CGGGSCTTHHHHHHTCSEEEEESCCCBTTTTTTTTSCCCSTTEEEECSSEEEET-TEEEESSCHHHHHHHHHHHCCCCCH
T ss_pred cCccCCHHHHHHHHhCCEEEEECCCccccccccccccCCCCcEEEEeCChheeC-CcccCCccHHHHHHHHHHhcccccc
Confidence 367899999999999998887776554444 999999999987 32222 34444322
Q ss_pred hhhhccCC---C------CCCC----------CCC------------------------CCCCE----------------
Q 038651 184 SYHRIYVP---H------GIPL----------KSN------------------------AHEPL---------------- 204 (324)
Q Consensus 184 ~~~~~~~~---~------~~~~----------~~~------------------------~~~~l---------------- 204 (324)
.|.. +.. . .... ... +...+
T Consensus 341 ~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~iv~~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~A~ 419 (566)
T 2vbi_A 341 SAQK-SSVPTCSLTATSDEAGLTNDEIVRHINALLTSNTTLVAETGDSWFNAMRMTLPRGARVELEMQWGHIGWSVPSAF 419 (566)
T ss_dssp HHHT-SCCCCCCCCCCCTTSCCCHHHHHHHHHHHCCTTEEEEECSSHHHHHHHTCCCCTTCEEECCTTTCCTTTHHHHHH
T ss_pred chhh-hhhhhhccCCCCCCCccCHHHHHHHHHHhcCCCCEEEECCchHHHhhhheECCCCCEEEecCcccchhhHHHHHH
Confidence 1211 100 0 0000 000 00000
Q ss_pred ---EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhhCCCCCCCCCCCHHHHHHHHHH----
Q 038651 205 ---MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIHDGPYNVIENWNYTGLVEAFQN---- 277 (324)
Q Consensus 205 ---~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~~~~~~l~~~df~~lA~a~G~---- 277 (324)
+..++..|++.+||++|.+. +|||+|++++++|+++||+||++|++++.+++..|++++++||.++|++||+
T Consensus 420 G~ala~~~~~vv~~~GDG~~~~~-~~eL~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~ 498 (566)
T 2vbi_A 420 GNAMGSQDRQHVVMVGDGSFQLT-AQEVAQMVRYELPVIIFLINNRGYVIEIAIHDGPYNYIKNWDYAGLMEVFNAGEGH 498 (566)
T ss_dssp HHHHTCTTSEEEEEEEHHHHHHH-GGGHHHHHHTTCCCEEEEEECSSCHHHHTTSCCGGGCCCCCCTTTHHHHHHTTTCC
T ss_pred HHHHhCCCCcEEEEEcchHHHhh-HHHHHHHHHhCCCcEEEEEECCcceEEEeeccCCccCCCCCCHHHHHHHcCCCCCC
Confidence 33467788888899998886 5999999999999999999999999999877667788888999999999995
Q ss_pred --------------HHHHhHHhCC-CCeEEEEEEecCCCCcHHHHHHHHHhhhhcCC
Q 038651 278 --------------AIETAAVEKK-DCLCFIEAIVHKDDTGKELLKWGSRVSAANNR 319 (324)
Q Consensus 278 --------------al~~a~~~~~-~~p~lIeV~id~~~~~~~~~~~~~~~~~~~~~ 319 (324)
+|++++ +. ++|+||||++++++.++.+.++.+.++.++++
T Consensus 499 ~~~~~v~~~~el~~al~~a~--~~~~gp~liev~~~~~~~~~~~~~~~~~~~~~~~~ 553 (566)
T 2vbi_A 499 GLGLKATTPKELTEAIARAK--ANTRGPTLIECQIDRTDCTDMLVQWGRKVASTNAR 553 (566)
T ss_dssp CEEEEECSHHHHHHHHHHHH--HCCSSCEEEEEECCTTCCCHHHHHHHHHHHHHHTC
T ss_pred ccEEEeCCHHHHHHHHHHHH--hcCCCcEEEEEEeCcccCcHHHHHHHHHhhhhccc
Confidence 666664 44 89999999999999999999999988887664
No 3
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=100.00 E-value=1.6e-54 Score=438.13 Aligned_cols=310 Identities=27% Similarity=0.395 Sum_probs=246.7
Q ss_pred CcCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcCceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh--
Q 038651 7 SSSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARAVGAYVVTFIVGRLSIINAIAGAYSENFPAATITA-- 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~-- 83 (324)
..+||+ +++|+|+|.++++|++|.+|||++|+||||||||+||+|||++|+|||++|++|||++||.|++|||+||+
T Consensus 23 fg~PG~~~~~l~~al~~~~~i~~v~~~~E~~Aa~~A~Gyar~tg~~v~~~TsGpG~~N~~~gia~A~~~~~Pll~itg~~ 102 (563)
T 2vk8_A 23 FGLPGDFNLSLLDKIYEVEGMRWAGNANELNAAYAADGYARIKGMSCIITTFGVGELSALNGIAGSYAEHVGVLHVVGVP 102 (563)
T ss_dssp EECCCGGGHHHHHGGGGSTTCEECCCSSHHHHHHHHHHHHHHHSCEEEEEETTHHHHHHHHHHHHHHHHTCCEEEEEEEC
T ss_pred EEcCCcchHHHHHHHhhcCCceEEccCchHHHHHHHHHHHHhhCCcEEEEcCCCcHHHHHHHHHHHHhhCCCEEEEECCC
Confidence 368999 99999999876689999999999999999999999999999999999999999999999999999999942
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 103 ~~~~~~~~~~~~~~~g~~~~q~~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~d~~~~~~~~~~~~ 182 (563)
T 2vk8_A 103 SISAQAKQLLLHHTLGNGDFTVFHRMSANISETTAMITDIATAPAEIDRCIRTTYVTQRPVYLGLPANLVDLNVPAKLLQ 182 (563)
T ss_dssp CHHHHHTTCCCTTSCSSSCSSHHHHHHHTTCSEEEECCCTTTHHHHHHHHHHHHHHHTSCEEEEEETTGGGSEEEGGGGG
T ss_pred ChHHhhcccccccccCCcchHHHHHHhhhhEEEEEEeCCHHHHHHHHHHHHHHHHhCCCCEEEEechhhhcCccCCccCc
Confidence
Q ss_pred -------------------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc-----------
Q 038651 84 -------------------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM----------- 127 (324)
Q Consensus 84 -------------------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~----------- 127 (324)
|++||||+|++|+|+.++++.+++++|+|++|+||++|++|||+
T Consensus 183 ~~~~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~g~g~~~~~~p~~~G~ 262 (563)
T 2vk8_A 183 TPIDMSLKPNDAESEKEVIDTILVLDKDAKNPVILADACCSRHDVKAETKKLIDLTQFPAFVTPMGKGSIDEQHPRYGGV 262 (563)
T ss_dssp SCCCCSCCCCCHHHHHHHHHHHHHHHHHCSSEEEEECHHHHHTTCHHHHHHHHHHHCCCEEECTTTTTSSCTTSTTEEEE
T ss_pred CcccccCCCCCchhhHHHHHHHHHHHHhCCCCEEEECcCccccchHHHHHHHHHHhCCCEEECcccCccCCCCCCccccc
Confidence 67899999999999998999999999999999999999999987
Q ss_pred ------------cccCCcEEEEEcCccCCcccccccccCCCC-EEEEcCCccccccCCChh-----hHHHHHHH-----h
Q 038651 128 ------------IVEFADAYIFVESIFNDYSSVGYSLLLNKK-AILMQPDRIVVANGLLLP-----NRNTSAYE-----S 184 (324)
Q Consensus 128 ------------~l~~aDlvl~lG~~~~~~~t~~~~~~~~~~-iI~id~d~~~i~~~~~~~-----d~l~~~~~-----~ 184 (324)
++++||+||++|++++++.++.|....+.. +||||+|+.+++ +..+. ++|+++.+ .
T Consensus 263 ~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~-~~~~~~~~~~~~l~~L~~~l~~~~ 341 (563)
T 2vk8_A 263 YVGTLSKPEVKEAVESADLILSVGALLSDFNTGSFSYSYKTKNIVEFHSDHMKIR-NATFPGVQMKFVLQKLLTTIADAA 341 (563)
T ss_dssp CCGGGSCHHHHHHHHTCSEEEEESCCCCTTTTTTTCCCCCCSCEEEECSSEEEET-TEEEETCCHHHHHHHHHHHHHHHT
T ss_pred ccCccCCHHHHHHHHhCCEEEEECCCCccccccccccCCCCCeEEEEeCCceEEC-CcccCCcCHHHHHHHHHHhhcccc
Confidence 357999999999999998888776544444 999999999987 33222 34444321 1
Q ss_pred --hhh--ccCCC---C-C----CC----------CCCCCCC------------------------E--------------
Q 038651 185 --YHR--IYVPH---G-I----PL----------KSNAHEP------------------------L-------------- 204 (324)
Q Consensus 185 --~~~--~~~~~---~-~----~~----------~~~~~~~------------------------l-------------- 204 (324)
|.. .+... . . .. ...+.+. +
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~ 421 (563)
T 2vk8_A 342 KGYKPVAVPARTPANAAVPASTPLKQEWMWNQLGNFLQEGDVVIAETGTSAFGINQTTFPNNTYGISQVLWGSIGFTTGA 421 (563)
T ss_dssp TTCCCCCCCCCCCCCCCCCTTCBCCHHHHHHHHTTTCCTTCEEEECTTHHHHHGGGSCCCSSCEEECCTTTCCTTHHHHH
T ss_pred chhhhhhhhhhcccccCCCCCCCcCHHHHHHHHHHhCCCCCEEEECCchHHHHHhhcCcCCCCeEEcccchhhhhhHHHH
Confidence 211 00000 0 0 00 0000000 0
Q ss_pred -----EecCC----CeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhhC--CCCCCCCCCCHHHHHH
Q 038651 205 -----MLSGN----TAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIHD--GPYNVIENWNYTGLVE 273 (324)
Q Consensus 205 -----~~~~~----~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~--~~~~~l~~~df~~lA~ 273 (324)
+..|+ ..|++..||++|.+. .|||+|+++|++|+++||+||++|++++.++. ..|+++.++||.++|+
T Consensus 422 A~Gaala~~~~~~~~~vv~~~GDG~~~~~-~~el~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~~d~~~~a~ 500 (563)
T 2vk8_A 422 TLGAAFAAEEIDPKKRVILFIGDGSLQLT-VQEISTMIRWGLKPYLFVLNNDGYTIQKLIHGPKAQYNEIQGWDHLSLLP 500 (563)
T ss_dssp HHHHHHHHHHHCTTCCEEEEEEHHHHHHH-GGGHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTCGGGCCCCCCGGGHHH
T ss_pred HHHHHHhCcccCCCCCEEEEEcchHhhcc-HHHHHHHHHcCCCcEEEEEECCcchhhhhhhCCCCCcccCCCCCHHHHHH
Confidence 22334 667777888888776 49999999999999999999999999987652 3466778899999999
Q ss_pred HHHH------------HHHHhHH---hCC-CCeEEEEEEecCCCCcHHHHHHHHHhhhhcC
Q 038651 274 AFQN------------AIETAAV---EKK-DCLCFIEAIVHKDDTGKELLKWGSRVSAANN 318 (324)
Q Consensus 274 a~G~------------al~~a~~---~~~-~~p~lIeV~id~~~~~~~~~~~~~~~~~~~~ 318 (324)
+||+ .|++++. .+. ++|+||||++++++.|+.+..+.+.++++++
T Consensus 501 a~G~~~~~~~~v~~~~el~~al~~~a~~~~~~p~liev~~~~~~~~~~~~~~~~~~~~~~~ 561 (563)
T 2vk8_A 501 TFGAKDYETHRVATTGEWDKLTQDKSFNDNSKIRMIEVMLPVFDAPQNLVEQAKLTAATNA 561 (563)
T ss_dssp HTTCSSEEEEEECBHHHHHHHHTCTTTTSCSSEEEEEEECCTTCCCHHHHHHHHHHHHHHH
T ss_pred HhCCCCCcEEEecCHHHHHHHHHHHHHhCCCCcEEEEEEeCccccCHHHHHHHHHhhhhhc
Confidence 9985 4444431 133 4799999999999999999999998887754
No 4
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=100.00 E-value=8.3e-54 Score=431.87 Aligned_cols=308 Identities=31% Similarity=0.424 Sum_probs=250.1
Q ss_pred CcCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcCceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh--
Q 038651 7 SSSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARAVGAYVVTFIVGRLSIINAIAGAYSENFPAATITA-- 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~-- 83 (324)
..+||+ +++|+|+|.++++|++|.+|||++|+||||||||+||+|||++|+|||++|+++||++||.|++|||+||+
T Consensus 24 fg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~Gyar~tg~~v~~~tsGpG~~N~~~gv~~A~~~~~Pll~itg~~ 103 (552)
T 1ovm_A 24 FGVPGDYNLQFLDHVIDSPDICWVGCANELNASYAADGYARCKGFAALLTTFGVGELSAMNGIAGSYAEHVPVLHIVGAP 103 (552)
T ss_dssp EECCCGGGHHHHHHHHHCSSCEEEECSSHHHHHHHHHHHHHHHSCEEEEEETTHHHHHTHHHHHHHHHTTCCEEEEEEEC
T ss_pred EECCChhHHHHHHHHhcCCCceEEeeCcHHHHHHHHHHHHHhhCCcEEEEccCCcHHHHHHHHHHHhhhcCCEEEEECCC
Confidence 368999 99999999886689999999999999999999999999999999999999999999999999999999942
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 104 p~~~~~~~~~~~~~~g~~~~q~~~~~~~~~tk~~~~v~~~~~~~~i~~A~~~a~~~~GPV~l~iP~d~~~~~~~~~~~~~ 183 (552)
T 1ovm_A 104 GTAAQQRGELLHHTLGDGEFRHFYHMSEPITVAQAVLTEQNACYEIDRVLTTMLRERRPGYLMLPADVAKKAATPPVNAL 183 (552)
T ss_dssp CHHHHHHTCCCTTSCSSSCCSHHHHHTGGGCSEEEECCTTTHHHHHHHHHHHHHHHTCCEEEEEEHHHHHSBCCCCSSCC
T ss_pred CHHHHhcccccccccCCCcHHHHHHHHHhheeEEEEEccccHHHHHHHHHHHHHhCCCCEEEEeehhhccCccCCCcccc
Confidence
Q ss_pred ----------------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc--------------
Q 038651 84 ----------------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM-------------- 127 (324)
Q Consensus 84 ----------------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~-------------- 127 (324)
|++||||+|++|+|+.++++.+++++|+|++|+||++|++|||+
T Consensus 184 ~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~~g~~~~~hp~~~G~~~g 263 (552)
T 1ovm_A 184 THKQAHADSACLKAFRDAAENKLAMSKRTALLADFLVLRHGLKHALQKWVKEVPMAHATMLMGKGIFDERQAGFYGTYSG 263 (552)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHTCSCEEEEECHHHHHTTCHHHHHHHHHHSCCEEEECGGGTTSSCTTSTTCCCCCCG
T ss_pred cccCCCCCccchHHHHHHHHHHHHhCCCCEEEECcCccccCHHHHHHHHHHHHCCCEEEccccCccCCCCCcCeecccCC
Confidence 67899999999999998999999999999999999999999987
Q ss_pred ---------cccCCcEEEEEcCccCCcccccccccCCCC-EEEEcCCccccccCCChh-----hHHHHHHH------hhh
Q 038651 128 ---------IVEFADAYIFVESIFNDYSSVGYSLLLNKK-AILMQPDRIVVANGLLLP-----NRNTSAYE------SYH 186 (324)
Q Consensus 128 ---------~l~~aDlvl~lG~~~~~~~t~~~~~~~~~~-iI~id~d~~~i~~~~~~~-----d~l~~~~~------~~~ 186 (324)
++++||+||++|+++.++.++.|..+.+.. +||||+|+.+++ +..+. ++++++.+ .|.
T Consensus 264 ~~~~~~~~~~l~~aD~vl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~-~~~~~~~~~~~~l~~L~~l~~~~~~~~ 342 (552)
T 1ovm_A 264 SASTGAVKEAIEGADTVLCVGTRFTDTLTAGFTHQLTPAQTIEVQPHAARVG-DVWFTGIPMNQAIETLVELCKQHVHAG 342 (552)
T ss_dssp GGSCHHHHHHHHTSSEEEEESCCCCTTTTTTTCCCCCTTTEEEECSSEEEET-TEEEESCCHHHHHHHHHHHHHTSCCC-
T ss_pred CCCCHHHHHHHHhCCEEEEECCCCCcccccccccCCCCCeEEEEeCChheeC-CcccCCccHHHHHHHHHhCcccccchh
Confidence 467999999999999998888776554444 999999999987 32222 34443321 111
Q ss_pred hccC-------C-CCCCC----------C-C-----------------------CCCCCE-------------------E
Q 038651 187 RIYV-------P-HGIPL----------K-S-----------------------NAHEPL-------------------M 205 (324)
Q Consensus 187 ~~~~-------~-~~~~~----------~-~-----------------------~~~~~l-------------------~ 205 (324)
..+. + ..... . . .+...+ +
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~A~G~a~ 422 (552)
T 1ovm_A 343 LMSSSSGAIPFPQPDGSLTQENFWRTLQTFIRPGDIILADQGTSAFGAIDLRLPADVNFIVQPLWGSIGYTLAAAFGAQT 422 (552)
T ss_dssp -------------CCSBCCHHHHHHHHHHHCCTTCEEEECTTHHHHHHTTCCCCSSCEEECCTTTCCTTHHHHHHHHHHH
T ss_pred hhhhhccccccCCCCCccCHHHHHHHHHHhcCCCCEEEECCchHHHHHHhcccCCCCeEEechhhHhhhhHHHHHHHHHH
Confidence 0000 0 00000 0 0 000000 3
Q ss_pred ecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhh--CCCCCCCCCCCHHHHHHHHHH------
Q 038651 206 LSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIH--DGPYNVIENWNYTGLVEAFQN------ 277 (324)
Q Consensus 206 ~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~--~~~~~~l~~~df~~lA~a~G~------ 277 (324)
..|+..|++.+||++|.+. .|||+|++++++|+++||+||++|++++..+ ...|+++.++||.++|++||+
T Consensus 423 a~~~~~vv~~~GDG~~~~~-~~el~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~~~ 501 (552)
T 1ovm_A 423 ACPNRRVIVLTGDGAAQLT-IQELGSMLRDKQHPIILVLNNEGYTVERAIHGAEQRYNDIALWNWTHIPQALSLDPQSEC 501 (552)
T ss_dssp HCTTSCEEEEEEHHHHHHH-TTHHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTCGGGCCCCCCGGGSTTTSCSSCCEEE
T ss_pred hCCCCcEEEEECchHHHhH-HHHHHHHHHhCCCCEEEEEECCCCeEEEeeccCCCCcccCCCCCHHHHHHHhCCCcCCCE
Confidence 3567778888899988876 5999999999999999999999999998765 334677888999999999985
Q ss_pred -----------HHHHhHHhCCCCeEEEEEEecCCCCcHHHHHHHHHhhhhcC
Q 038651 278 -----------AIETAAVEKKDCLCFIEAIVHKDDTGKELLKWGSRVSAANN 318 (324)
Q Consensus 278 -----------al~~a~~~~~~~p~lIeV~id~~~~~~~~~~~~~~~~~~~~ 318 (324)
+|++++ +.++|+||||.+++++.|+.+.++.+.+++.++
T Consensus 502 ~~v~~~~~l~~al~~a~--~~~gp~liev~~~~~~~~~~l~~~~~~~~~~~~ 551 (552)
T 1ovm_A 502 WRVSEAEQLADVLEKVA--HHERLSLIEVMLPKADIPPLLGALTKALEACNN 551 (552)
T ss_dssp EEECBHHHHHHHHHHHT--TCSSEEEEEEECCTTCCCHHHHHHHHHHHHHHC
T ss_pred EEeCCHHHHHHHHHHHH--hCCCCEEEEEEcCcccCCHHHHHHHHHHhhhhc
Confidence 666663 678999999999999999999999998877643
No 5
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=100.00 E-value=2.2e-53 Score=429.44 Aligned_cols=303 Identities=16% Similarity=0.095 Sum_probs=231.8
Q ss_pred CcCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh-
Q 038651 7 SSSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA- 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~- 83 (324)
..+||+ +++|+|+|.++++|++|.+|||++|+||||||||+|| +|||++|+|||++|++|||++||.|++|||+||+
T Consensus 27 Fg~PG~~~~~l~dal~~~~~i~~i~~~hE~~Aa~~AdGyAr~tG~pgv~~~TsGpG~~N~~~gia~A~~d~vPll~itG~ 106 (556)
T 3hww_A 27 CIAPGSRSTLLTLAAAENSAFIHHTHFDERGLGHLALGLAKVSKQPVAVIVTSGTAVANLYPALIEAGLTGEKLILLTAD 106 (556)
T ss_dssp EECCCTTSHHHHHHHHHCTTCEEEECSCHHHHHHHHHHHHHHHCSCEEEEECSSHHHHTTHHHHHHHHHHCCCEEEEEEE
T ss_pred EEcCCCCcHHHHHHHhhCCCceEEEecCCcHHHHHHHHHHHhhCCCEEEEECCCcHHHhhhHHHHHHHHhCCCeEEEeCC
Confidence 358999 9999999987678999999999999999999999999 9999999999999999999999999999999952
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 107 ~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~i~~~i~~A~~~~r~GPV~i~iP~d~~~~~~~~~~~~~~~ 186 (556)
T 3hww_A 107 RPPELIDCGANQAIRQPGMFASHPTHSISLPRPTQDIPARWLVSTIDHALGTLHAGGVHINCPFAEPLYGEMDDTGLSWQ 186 (556)
T ss_dssp CCGGGSSSSCTTCCCCTTTTTTCSSEEEECCCCCTTSCHHHHHHHHHHHHHSCCSSCEEEEEECCSCCSCCCSSTTHHHH
T ss_pred CCHHHhccCCCccccHHHHHhhheeEEEecCCCcccccHHHHHHHHHHHHhcCCCCCEEEeCCcCCCCCCCccccccccc
Confidence
Q ss_pred -----------------------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCC-CCCc------
Q 038651 84 -----------------------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPS-AKGM------ 127 (324)
Q Consensus 84 -----------------------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~-gkg~------ 127 (324)
|.+||||+|++|++ ++++.+++++|+|++|+||++|++ |||.
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~rPvIl~G~~--~~~a~~~l~~lae~~~~PV~~t~~~~~~~~~~~~~ 264 (556)
T 3hww_A 187 QRLGDWWQDDKPWLREAPRLESEKQRDWFFWRQKRGVVVAGRM--SAEEGKKVALWAQTLGWPLIGDVLSQTGQPLPCAD 264 (556)
T ss_dssp HTTGGGGGCCSCSSCCCCCCCCCCCTTHHHHTTSCEEEEECBC--CHHHHHHHHHHHHHHTCCEEECTTTCSCCSSCCHH
T ss_pred cccccccccccccccccccccchhhhhhhhccCCCeEEEECCC--ChHHHHHHHHHHHhcCCEEEEccCCCCCCCcCcHH
Confidence 23578999999984 468999999999999999999975 7876
Q ss_pred ----------cccCCcEEEEEcCccCCcccccccccCCC-CEEEEcCCccccccCCChh------h---HHHHHH-----
Q 038651 128 ----------IVEFADAYIFVESIFNDYSSVGYSLLLNK-KAILMQPDRIVVANGLLLP------N---RNTSAY----- 182 (324)
Q Consensus 128 ----------~l~~aDlvl~lG~~~~~~~t~~~~~~~~~-~iI~id~d~~~i~~~~~~~------d---~l~~~~----- 182 (324)
++++|||||++|+++++..+..|...++. ++||||+|+.+++ +.... | +++++.
T Consensus 265 ~~lg~~~~~~~~~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~-~~~~~~~~i~~d~~~~l~~l~~~~~~ 343 (556)
T 3hww_A 265 LWLGNAKATSELQQAQIVVQLGSSLTGKRLLQWQASCEPEEYWIVDDIEGRLD-PAHHRGRRLIANIADWLELHPAEKRQ 343 (556)
T ss_dssp HHTTSHHHHHHHTTCSEEEEESBCCCCHHHHHHHHHCCCSEEEEEESSCSCCC-TTCCSEEEEESCHHHHHHHSCCCCCC
T ss_pred HHhcCchhhhcccCCCEEEEcCCCcccHHHHHHHhcCCCCeEEEECCCCccCC-CCCCceEEEEcCHHHHHHhcccccch
Confidence 56899999999999987766555433334 4999999999998 32222 2 232210
Q ss_pred ----------Hhhhh-----------------c--cCCCCCCC--------------CCCC-CCC-------------E-
Q 038651 183 ----------ESYHR-----------------I--YVPHGIPL--------------KSNA-HEP-------------L- 204 (324)
Q Consensus 183 ----------~~~~~-----------------~--~~~~~~~~--------------~~~~-~~~-------------l- 204 (324)
..|.. . ..+..... ...+ ... +
T Consensus 344 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~G~l~ 423 (556)
T 3hww_A 344 PWCVEIPRLAEQAMQAVIARRDAFGEAQLAHRICDYLPEQGQLFVGNSLVVRLIDALSQLPAGYPVYSNRGASGIDGLLS 423 (556)
T ss_dssp CCCSSHHHHHHHHHHHHHTTCCSSSHHHHHHTGGGTCCTTCEEEECSSHHHHHHHHHCCCCTTCCEEECCSSCCSSSHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcccCcCHHHHHHHHHHhCCCCCeEEEeCCcHHHHHHHhccCCCCceEEecCcccccccHHH
Confidence 00000 0 00000000 0000 000 1
Q ss_pred -----EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhh------CCCCCCCCCCCHHHHHH
Q 038651 205 -----MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIH------DGPYNVIENWNYTGLVE 273 (324)
Q Consensus 205 -----~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~------~~~~~~l~~~df~~lA~ 273 (324)
.+.++..|++.+||++|.|. +|||+|++||++|+++||+||++|++++.++ ...|....++||.++|+
T Consensus 424 ~A~Gaa~a~~~~vv~i~GDGsf~~~-~~eL~ta~~~~lpv~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~ 502 (556)
T 3hww_A 424 TAAGVQRASGKPTLAIVGDLSALYD-LNALALLRQVSAPLVLIVVNNNGGQIFSLLPTPQSERERFYLMPQNVHFEHAAA 502 (556)
T ss_dssp HHHHHHHHHCCCEEEEEEHHHHHHT-GGGHHHHTTCSSCEEEEEEESCC-----------------CCCCCCCCSHHHHH
T ss_pred HHHHHHhcCCCcEEEEEccHHhhhc-chhhHhhcccCCCcEEEEEECCCCCcccCCCCcchhHHHhccCCCCCCHHHHHH
Confidence 22367889999999999887 5999999999999999999999999987542 22345567899999999
Q ss_pred HHHH-------------HHHHhHHhCCCCeEEEEEEecCCCCcHHHHHHHHHhhh
Q 038651 274 AFQN-------------AIETAAVEKKDCLCFIEAIVHKDDTGKELLKWGSRVSA 315 (324)
Q Consensus 274 a~G~-------------al~~a~~~~~~~p~lIeV~id~~~~~~~~~~~~~~~~~ 315 (324)
+||+ +|++++ +.++|+||||++++++.++.+..+.+.++.
T Consensus 503 a~G~~~~~v~~~~~l~~al~~a~--~~~gp~liev~~~~~~~~~~l~~~~~~~~~ 555 (556)
T 3hww_A 503 MFELKYHRPQNWQELETAFADAW--RTPTTTVIEMVVNDTDGAQTLQQLLAQVSH 555 (556)
T ss_dssp HTTCEEECCSSHHHHHHHHHHHT--TSSSEEEEEEECCSSHHHHHHHHHHHHHHT
T ss_pred HcCCcEEecCCHHHHHHHHHHHH--hCCCCEEEEEECCccccHHHHHHHHHHhhc
Confidence 9998 667664 788999999999999999999999887653
No 6
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=100.00 E-value=2.4e-53 Score=428.53 Aligned_cols=286 Identities=17% Similarity=0.163 Sum_probs=223.0
Q ss_pred CcCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh-
Q 038651 7 SSSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA- 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~- 83 (324)
..+||+ +++|+|+|.++++|++|.+|||++|+||||||||+|| +|||++|+|||++|+++||++||.|++|||+||+
T Consensus 22 fg~PG~~~~~l~dal~~~~~i~~i~~~~E~~Aa~~A~GyAr~tg~~~v~~~TsGpG~~N~~~gi~~A~~~~vPvl~itg~ 101 (549)
T 3eya_A 22 WGVTGDSLNGLSDSLNRMGTIEWMSTRHEEVAAFAAGAEAQLSGELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAH 101 (549)
T ss_dssp EECCCGGGHHHHHHHHHHCSSEEEECSSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHTTHHHHHHHHHTTCCEEEEEEE
T ss_pred EEcCCCchHHHHHHHHhcCCCeEEEeCChHHHHHHHHHHHHHhCCCEEEEeCCCCcHhhhHHHHHHHHhhCCCEEEEeCC
Confidence 368999 9999999988668999999999999999999999999 9999999999999999999999999999999952
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 102 ~~~~~~~~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~dv~~~~~~~~~~~~~~~~~~ 181 (549)
T 3eya_A 102 IPSSEIGSGYFQETHPQELFRECSHYCELVSSPEQIPQVLAIAMRKAVLNRGVSVVVLPGDVALKPAPEGATMHWYHAPQ 181 (549)
T ss_dssp SCGGGTTSCCTTCCCHHHHTSTTCSEEEECCSGGGHHHHHHHHHHHHHHTTSEEEEEEEHHHHTSBCCTTCCCCCCCCCC
T ss_pred CchhhcCCCCCCccCHHHHHhhhhheEEEeCCHHHHHHHHHHHHHHHhhCCCCEEEEeChhHhhcccCccccccccccCC
Confidence
Q ss_pred ----------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc--------------------
Q 038651 84 ----------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM-------------------- 127 (324)
Q Consensus 84 ----------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~-------------------- 127 (324)
|++||||+|++|+|+. ++.+++++|+|++|+||++|++|||+
T Consensus 182 ~~~~~~~~~i~~~~~~l~~A~rpvIl~G~g~~--~a~~~l~~lae~~~~Pv~~t~~gkg~~~~~hp~~~G~~G~~~~~~~ 259 (549)
T 3eya_A 182 PVVTPEEEELRKLAQLLRYSSNIALMCGSGCA--GAHKELVEFAGKIKAPIVHALRGKEHVEYDNPYDVGMTGLIGFSSG 259 (549)
T ss_dssp CEEECCHHHHHHHHHHHHTCCSEEEEECGGGT--TCHHHHHHHHHHHTCCEEECGGGHHHHSSSCTTBCCCCSTTSCHHH
T ss_pred CCCCCCHHHHHHHHHHHHhCCCcEEEECCCch--HHHHHHHHHHHHhCCCEEECCccCcCCCCCCcccccCCCCCCCHHH
Confidence 7889999999999984 78899999999999999999999976
Q ss_pred --cccCCcEEEEEcCccCCcccccccccCCCC-EEEEcCCccccccCCChh------h---HHHHHHH--------hh--
Q 038651 128 --IVEFADAYIFVESIFNDYSSVGYSLLLNKK-AILMQPDRIVVANGLLLP------N---RNTSAYE--------SY-- 185 (324)
Q Consensus 128 --~l~~aDlvl~lG~~~~~~~t~~~~~~~~~~-iI~id~d~~~i~~~~~~~------d---~l~~~~~--------~~-- 185 (324)
++++|||||++|++++... | +.+.. +||||+|+.+++ +.... | +|+++.+ .|
T Consensus 260 ~~~~~~aDlvl~iG~~~~~~~---~--~~~~~~~i~id~d~~~~~-~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~ 333 (549)
T 3eya_A 260 FHTMMNADTLVLLGTQFPYRA---F--YPTDAKIIQIDINPASIG-AHSKVDMALVGDIKSTLRALLPLVEEKADRKFLD 333 (549)
T ss_dssp HHHHHHCSEEEEESCCCCCGG---G--SCSSSEEEEEESCGGGTT-SSSCCSEEEECCHHHHHHHHGGGSCCCCCCHHHH
T ss_pred HHHHHhCCEEEEECCCCCccc---c--CCCCCeEEEEeCCHHHhC-CCCCCCeEEEeCHHHHHHHHHHhccccCcHHHHH
Confidence 5679999999999985321 1 22334 999999999997 32211 2 3332211 01
Q ss_pred ---------hh----ccCCCCCCC----------------------------------C-CCCCCCE-------------
Q 038651 186 ---------HR----IYVPHGIPL----------------------------------K-SNAHEPL------------- 204 (324)
Q Consensus 186 ---------~~----~~~~~~~~~----------------------------------~-~~~~~~l------------- 204 (324)
.. ...+..... . ..+...+
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~ 413 (549)
T 3eya_A 334 KALEDYRDARKGLDDLAKPSEKAIHPQYLAQQISHFAADDAIFTCDVGTPTVWAARYLKMNGKRRLLGSFNHGSMANAMP 413 (549)
T ss_dssp HHHHHHHHHHHHHHHTSCCCSSCBCHHHHHHHHHHHSCTTCEEEECTTHHHHHHHHHCCCCSSCEEECCTTTCCTTCHHH
T ss_pred HHHHHHHHHHHHHhhhcCCCCCCcCHHHHHHHHHhhCCCCCEEEEcCcHHHHHHHHhCccCCCCcEEeCCCCchhhhHHH
Confidence 00 000000000 0 0000000
Q ss_pred ------EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhh-----CCCCCCCCCCCHHHHHH
Q 038651 205 ------MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIH-----DGPYNVIENWNYTGLVE 273 (324)
Q Consensus 205 ------~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~-----~~~~~~l~~~df~~lA~ 273 (324)
...|+..|++.+||++|.+. +|||+|+++|++|+++||+||++|++++..| ...++++.++||.++|+
T Consensus 414 ~AiGaala~~~~~vv~i~GDGs~~~~-~~~L~ta~~~~l~~~ivv~nN~~~g~~~~~~~~~~~~~~~~~~~~~d~~~~a~ 492 (549)
T 3eya_A 414 QALGAQATEPERQVVAMCGDGGFSML-MGDFLSVVQMKLPVKIVVFNNSVLGFVAMEMKAGGYLTDGTELHDTNFARIAE 492 (549)
T ss_dssp HHHHHHHHSTTSCEEEEEEHHHHHHT-GGGHHHHHHTTCCCEEEEEECSBCCCC------------CCBCCCCCHHHHHH
T ss_pred HHHHHHHhCCCCcEEEEEccchhhcc-HHHHHHHHHhCCCeEEEEEeCCccHHHHHHHHhcCCCCcCCcCCCCCHHHHHH
Confidence 33567888888999999887 5999999999999999999999999876554 22357788899999999
Q ss_pred HHHH-------------HHHHhHHhCCCCeEEEEEEecCCCCc
Q 038651 274 AFQN-------------AIETAAVEKKDCLCFIEAIVHKDDTG 303 (324)
Q Consensus 274 a~G~-------------al~~a~~~~~~~p~lIeV~id~~~~~ 303 (324)
+||+ +|++++ +.++|+||||++++++.+
T Consensus 493 a~G~~~~~v~~~~~l~~al~~a~--~~~gp~liev~~~~~~~~ 533 (549)
T 3eya_A 493 ACGITGIRVEKASEVDEALQRAF--SIDGPVLVDVVVAKEELA 533 (549)
T ss_dssp HTTSEEEEECSGGGHHHHHHHHH--HSSSCEEEEEEBCCCCSC
T ss_pred HcCCcEEEeCCHHHHHHHHHHHH--hCCCCEEEEEEecccccc
Confidence 9999 777775 679999999999997754
No 7
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=100.00 E-value=5.3e-53 Score=427.45 Aligned_cols=308 Identities=19% Similarity=0.289 Sum_probs=242.4
Q ss_pred CcCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh-
Q 038651 7 SSSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA- 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~- 83 (324)
..+||+ +++|+|+|.+++.+++|.+|||++|+||||||||+|| +|||++|+|||++|++|||++||.|++|||+||+
T Consensus 40 fg~PG~~~~~l~~al~~~~~~~~i~~~~E~~Aa~~A~GyAr~tgkp~v~~~TsGpG~~N~~~gv~~A~~~~vPll~itg~ 119 (565)
T 2nxw_A 40 FGIPGDFALPFFKVAEETQILPLHTLSHEPAVGFAADAAARYSSTLGVAAVTYGAGAFNMVNAVAGAYAEKSPVVVISGA 119 (565)
T ss_dssp EECCCGGGHHHHHHHHHHCSSCEEECSSHHHHHHHHHHHHHHHTSCEEEEECTTHHHHTTHHHHHHHHHTTCCEEEEEEE
T ss_pred EECCCcchHHHHHHHHhCCCcEEEecCcHHHHHHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHHHHHhhCCCEEEEeCC
Confidence 468999 9999999987555789999999999999999999999 9999999999999999999999999999999952
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 120 ~~~~~~~~~~~~~~~~q~~d~q~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~Dv~~~~~~~~~~~~ 199 (565)
T 2nxw_A 120 PGTTEGNAGLLLHHQGRTLDTQFQVFKEITVAQARLDDPAKAPAEIARVLGAARAQSRPVYLEIPRNMVNAEVEPVGDDP 199 (565)
T ss_dssp CCTTCC--CCCC-------CHHHHHHTTSCSCEEECCCTTTHHHHHHHHHHHHHHHTCCEEEEEEGGGTTCBCCCCCCCC
T ss_pred CChhhhccCcceeeeccchhhHHHHHHhhheEEEEeCCHHHHHHHHHHHHHHHHhCCCCEEEECChhhhcCcCCCccccC
Confidence
Q ss_pred -------------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc-----------------
Q 038651 84 -------------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM----------------- 127 (324)
Q Consensus 84 -------------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~----------------- 127 (324)
|++||||+|++|+|+.++++.+++++|+|++|+||++|++|||.
T Consensus 200 ~~~~~~~~~~~~i~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~~g~~~~~~p~~~G~~~g~~~ 279 (565)
T 2nxw_A 200 AWPVDRDALAACADEVLAAMRSATSPVLMVCVEVRRYGLEAKVAELAQRLGVPVVTTFMGRGLLADAPTPPLGTYIGVAG 279 (565)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHCSSEEEEECHHHHHTTCHHHHHHHHHHHCSCEEECGGGTTTTTTSSSCCSCBCCGGGS
T ss_pred CCCCCchhhHHHHHHHHHHHHcCCCCEEEECCCcchhchHHHHHHHHHHhCCCEEECcccCccCCCCCCccccccCcccC
Confidence 67899999999999998899999999999999999999999987
Q ss_pred ------cccCCcEEEEEcCccCCcccccccccCCCC-EEEEcCCccccccCCChh-----hHHHHHHHh-------hhhc
Q 038651 128 ------IVEFADAYIFVESIFNDYSSVGYSLLLNKK-AILMQPDRIVVANGLLLP-----NRNTSAYES-------YHRI 188 (324)
Q Consensus 128 ------~l~~aDlvl~lG~~~~~~~t~~~~~~~~~~-iI~id~d~~~i~~~~~~~-----d~l~~~~~~-------~~~~ 188 (324)
++++||+||++|+++.++.++.|...++.. +||||.|+.+++ +.... ++++++.+. |...
T Consensus 280 ~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~i~~d~~~~~-~~~~~~~~~~~~l~~L~~~l~~~~~~w~~~ 358 (565)
T 2nxw_A 280 DAEITRLVEESDGLFLLGAILSDTNFAVSQRKIDLRKTIHAFDRAVTLG-YHTYADIPLAGLVDALLERLPPSDRTTRGK 358 (565)
T ss_dssp CHHHHHHHHTCSEEEEESCCBCSSTTSBCTTTSCGGGEEEEETTEEEET-TEEEESCCHHHHHHHHHHTSCCCCCCCCCS
T ss_pred CHHHHHHHHhCCEEEEECCCccccccccccccCCCCcEEEEeCCceeeC-CcccCCccHHHHHHHHHHhccccchhhhhh
Confidence 357899999999999988877665433334 999999999987 33222 344444321 2110
Q ss_pred cCCCCCCCC-CCCCCCE-----------Eec-------------------------------------------------
Q 038651 189 YVPHGIPLK-SNAHEPL-----------MLS------------------------------------------------- 207 (324)
Q Consensus 189 ~~~~~~~~~-~~~~~~l-----------~~~------------------------------------------------- 207 (324)
.. ...... ..+..++ .++
T Consensus 359 ~~-~~~~~~~~~~~~~l~~~~v~~~l~~~l~~~~~~iv~~~d~G~~~~~~~~~~~~~~~~~~~~g~mG~~l~~A~G~ala 437 (565)
T 2nxw_A 359 EP-HAYPTGLQADGEPIAPMDIARAVNDRVRAGQEPLLIAADMGDCLFTAMDMIDAGLMAPGYYAGMGFGVPAGIGAQCV 437 (565)
T ss_dssp CS-SCCCCCCCCSSSBCCHHHHHHHHHHHHHTTCCCCEEEECSSHHHHHHTTSCCSCEECCTTTCCTTCHHHHHHHHHHH
T ss_pred hh-hhccccccCCCCccCHHHHHHHHHHhcccccCCEEEEecchHHHHHHHhCCCcEEEccCccccccccchHHHHHHHh
Confidence 00 000000 0000111 233
Q ss_pred -CCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhh-CCCCCCCCCCCHHHHHHHHHH--------
Q 038651 208 -GNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIH-DGPYNVIENWNYTGLVEAFQN-------- 277 (324)
Q Consensus 208 -~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~-~~~~~~l~~~df~~lA~a~G~-------- 277 (324)
++..|++.+||++|.+. .|||+|+++|++|++|||+||++|++++..| ...|.++..+||.++|++||+
T Consensus 438 ~~~~~vv~i~GDG~~~~~-~~~l~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~ 516 (565)
T 2nxw_A 438 SGGKRILTVVGDGAFQMT-GWELGNCRRLGIDPIVILFNNASWEMLRTFQPESAFNDLDDWRFADMAAGMGGDGVRVRTR 516 (565)
T ss_dssp TTTCCEEEEEEHHHHHHH-GGGGGGHHHHTCCCEEEEEECSBCHHHHHHCTTCGGGBCCCCCHHHHTGGGTSEEEEECBH
T ss_pred CCCCcEEEEEechHHHhh-HHHHHHHHHhCCCCEEEEEECCCCcEEeeecccCCCCcCCCCCHHHHHHHcCCCEEEeCCH
Confidence 34444455555555543 2999999999999999999999999998766 455777888999999999998
Q ss_pred -----HHHHhHHhCCCCeE-EEEEEecCCCCcHHHHHHHHHhhhhcCC
Q 038651 278 -----AIETAAVEKKDCLC-FIEAIVHKDDTGKELLKWGSRVSAANNR 319 (324)
Q Consensus 278 -----al~~a~~~~~~~p~-lIeV~id~~~~~~~~~~~~~~~~~~~~~ 319 (324)
+|++++ +.++|. ||||.+++++.++.+.++.+.+++.++.
T Consensus 517 ~el~~al~~a~--~~~gp~~liev~~~~~~~~~~~~~~~~~~~~~~~~ 562 (565)
T 2nxw_A 517 AELKAALDKAF--ATRGRFQLIEAMIPRGVLSDTLARFVQGQKRLHAA 562 (565)
T ss_dssp HHHHHHHHHHH--HCCSSCEEEEEECCTTCCCHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHH--hcCCCeEEEEEEcccccCCHHHHHHHHHHHHhhcc
Confidence 666664 567887 9999999999999999999988776543
No 8
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=100.00 E-value=3.4e-52 Score=421.77 Aligned_cols=308 Identities=28% Similarity=0.408 Sum_probs=248.1
Q ss_pred CcCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcCceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh--
Q 038651 7 SSSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARAVGAYVVTFIVGRLSIINAIAGAYSENFPAATITA-- 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~-- 83 (324)
..+||+ +++|+|+|.++++|++|.+|||++|+||||||||+||+|||++|+|||++|++|||++||.|++|||+||+
T Consensus 44 fg~PG~~~~~l~~al~~~~~i~~i~~~~E~~A~~~A~GyAr~tG~~v~~~tsGpG~~N~~~gi~~A~~~~vPlv~itg~~ 123 (570)
T 2vbf_A 44 FGVPGDYNLQFLDQIISREDMKWIGNANELNASYMADGYARTKKAAAFLTTFGVGELSAINGLAGSYAENLPVVEIVGSP 123 (570)
T ss_dssp EECCCGGGHHHHHHHHHCSSCEEEECSSHHHHHHHHHHHHHHHSCEEEEEETTHHHHHHHHHHHHHHHTTCCEEEEEEEC
T ss_pred EECCCcchHHHHHHHhcCCCCeEECcCcHHHHHHHHHHHHHHhCCeEEEEcCCCCHHHHHHHHHHHhhhCCCEEEEeCCC
Confidence 368999 99999999876689999999999999999999999999999999999999999999999999999999942
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tk~~~~v~~~~~~~~l~~A~~~A~~~~GPV~l~iP~d~~~~~~~~~~~~~ 203 (570)
T 2vbf_A 124 TSKVQNDGKFVHHTLADGDFKHFMKMHEPVTAARTLLTAENATYEIDRVLSQLLKERKPVYINLPVDVAAAKAEKPALSL 203 (570)
T ss_dssp CHHHHHHTCCCTTSCSSSCCCHHHHHTGGGCSEEEECCTTTHHHHHHHHHHHHHHHCCCEEEEEEHHHHTSBCCCCSSCC
T ss_pred CHHHhhccccceeeccccchHHHHHHhhhhEEEEEEECcccHHHHHHHHHHHHhhCCCCEEEEcchhhhcCcccCCcccc
Confidence
Q ss_pred ---------------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc---------------
Q 038651 84 ---------------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM--------------- 127 (324)
Q Consensus 84 ---------------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~--------------- 127 (324)
|++||||+|++|+|+.++++.+++++|+|++|+||++|++|||+
T Consensus 204 ~~~~~~~~~~~~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~~g~~~~~~p~~~G~~~g~ 283 (570)
T 2vbf_A 204 EKESSTTNTTEQVILSKIEESLKNAQKPVVIAGHEVISFGLEKTVTQFVSETKLPITTLNFGKSAVDESLPSFLGIYNGK 283 (570)
T ss_dssp C------CHHHHHHHHHHHHHHHHCSSEEEEECHHHHHTTCHHHHHHHHHHHCCCEEECSTTTTSSCTTSTTEEEECCGG
T ss_pred cccCCCCCccHHHHHHHHHHHHHcCCCCEEEECcCccccChHHHHHHHHHHHCCCEEECcccCccCCCCCcCccCCcCCC
Confidence 45689999999999999999999999999999999999999996
Q ss_pred --------cccCCcEEEEEcCccCCcccccccccCCCC-EEEEcCCccccccCCChh-----hHHHHHHHh-----hhhc
Q 038651 128 --------IVEFADAYIFVESIFNDYSSVGYSLLLNKK-AILMQPDRIVVANGLLLP-----NRNTSAYES-----YHRI 188 (324)
Q Consensus 128 --------~l~~aDlvl~lG~~~~~~~t~~~~~~~~~~-iI~id~d~~~i~~~~~~~-----d~l~~~~~~-----~~~~ 188 (324)
++++||+||++|+++.++.+..|....+.. +||||+|+.+++ +..+. ++++++.+. |...
T Consensus 284 ~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~-~~~~~~~~~~~~l~~L~~~l~~~~~~~~ 362 (570)
T 2vbf_A 284 LSEISLKNFVESADFILMLGVKLTDSSTGAFTHHLDENKMISLNIDEGIIF-NKVVEDFDFRAVVSSLSELKGIEYEGQY 362 (570)
T ss_dssp GSCHHHHHHHHHCSEEEEESCCCCGGGTTTTCCCCCGGGEEEECSSCEEET-TEEECSSCHHHHHHTGGGCCSCCCCSCC
T ss_pred cCCHHHHHHHHhCCEEEEECCCcccccccccccCCCCCeEEEEeCCHHHhC-CeeecCCCHHHHHHHHHHhccccccccc
Confidence 357899999999999988887776544444 999999999887 32222 334433210 1000
Q ss_pred -cCC--C-C---CCC---------------------------------CC-CCCC--------CE-----------EecC
Q 038651 189 -YVP--H-G---IPL---------------------------------KS-NAHE--------PL-----------MLSG 208 (324)
Q Consensus 189 -~~~--~-~---~~~---------------------------------~~-~~~~--------~l-----------~~~~ 208 (324)
... . . ... .. .+.. .+ +..|
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~G~~~~~~~~~~~~~~~~~~~~~~~g~mG~~l~~A~Gaala~~ 442 (570)
T 2vbf_A 363 IDKQYEEFIPSSAPLSQDRLWQAVESLTQSNETIVAEQGTSFFGASTIFLKSNSRFIGQPLWGSIGYTFPAALGSQIADK 442 (570)
T ss_dssp CCCCCCCCCCCSSBCCHHHHHHHHHHHCCSSEEEEECTTHHHHHHTTSCCCTTCEEECCTTTCCTTTHHHHHHHHHHHCT
T ss_pred hhhhccccCCCCCCcCHHHHHHHHHHhcCCCCEEEEeCCHHHHHHHhcccCCCCeEecCccchhhhhhHHHHHHHHHhCC
Confidence 000 0 0 000 00 0000 00 3456
Q ss_pred CCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhh--CCCCCCCCCCCHHHHHHHHHH---------
Q 038651 209 NTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIH--DGPYNVIENWNYTGLVEAFQN--------- 277 (324)
Q Consensus 209 ~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~--~~~~~~l~~~df~~lA~a~G~--------- 277 (324)
+..|++.+||++|.+. .|||+|++++++|+++||+||++|++++.++ +..|+++.++||.++|++||+
T Consensus 443 ~~~vv~~~GDG~~~~~-~~eL~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~~~~~~ 521 (570)
T 2vbf_A 443 ESRHLLFIGDGSLQLT-VQELGLSIREKLNPICFIINNDGYTVEREIHGPTQSYNDIPMWNYSKLPETFGATEDRVVSKI 521 (570)
T ss_dssp TSEEEEEEEHHHHHHH-GGGHHHHHHTTCCCEEEEEESSSCHHHHHHSCTTCGGGCCCCCCGGGHHHHTTCCTTTEEEEE
T ss_pred CCcEEEEEcchhhhcC-HHHHHHHHHcCCCCEEEEEECCchHHHHHHhccCCCccCCCCCCHHHHHHHcCCCcCCcceEE
Confidence 7888888899988886 5999999999999999999999999998766 344677888999999999972
Q ss_pred ---------HHHHhHHhCCCCeEEEEEEecCCCCcHHHHHHHHHhhhhc
Q 038651 278 ---------AIETAAVEKKDCLCFIEAIVHKDDTGKELLKWGSRVSAAN 317 (324)
Q Consensus 278 ---------al~~a~~~~~~~p~lIeV~id~~~~~~~~~~~~~~~~~~~ 317 (324)
+|+++. .+.++|+||||.+++++.++.+.++.+.+++.+
T Consensus 522 v~~~~el~~al~~a~-~~~~~p~liev~~~~~~~~~~~~~~~~~~~~~~ 569 (570)
T 2vbf_A 522 VRTENEFVSVMKEAQ-ADVNRMYWIELVLEKEDAPKLLKKMGKLFAEQN 569 (570)
T ss_dssp ECBHHHHHHHHHHHH-HCTTSEEEEEEECCTTCCCHHHHHHHHHHHHHT
T ss_pred ecCHHHHHHHHHHHH-hcCCCcEEEEEEcCcccccHHHHHHHHHhhhcc
Confidence 566532 267899999999999999999999998887653
No 9
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=100.00 E-value=4.1e-52 Score=423.90 Aligned_cols=287 Identities=17% Similarity=0.185 Sum_probs=223.5
Q ss_pred CcCCCC-chHHHHhhhcC-CCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh
Q 038651 7 SSSPAD-SSSLLDHLIAE-PGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~-~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~ 83 (324)
..+||+ +++|+|+|.++ ++|++|.+|||++|+||||||||+|| +|||++|+|||++|++|||++||.|++|||+||+
T Consensus 30 fg~PG~~~~~l~dal~~~~~~i~~i~~~hE~~Aa~aA~GyAr~tg~~gv~~~TsGpG~~N~~~gia~A~~~~vPvl~itG 109 (603)
T 4feg_A 30 YGIPGGSINSIMDALSAERDRIHYIQVRHEEVGAMAAAADAKLTGKIGVCFGSAGPGGTHLMNGLYDAREDHVPVLALIG 109 (603)
T ss_dssp EECCCGGGHHHHHHHHHTTTTSEEEECSSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHTTHHHHHHHHHTTCCEEEEEE
T ss_pred EEeCCCchHHHHHHHHhccCCCeEEEecChHHHHHHHHHHHHHhCCceEEEecCCchHHHHHHHHHHHHHcCCCEEEEec
Confidence 358999 99999999875 47999999999999999999999999 9999999999999999999999999999999952
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 110 ~~~~~~~~~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~GPV~l~iP~dv~~~~~~~~~~~~~~~~~ 189 (603)
T 4feg_A 110 QFGTTGMNMDTFQEMNENPIYADVADYNVTAVNAATLPHVIDEAIRRAYAHQGVAVVQIPVDLPWQQIPAEDWYASANSY 189 (603)
T ss_dssp ECCTTTTTSCCTTCCCCGGGGTTTCSEEEECCCSTTHHHHHHHHHHHHHHHTSEEEEEEETTGGGSEEETTTCCCCGGGC
T ss_pred CCcccccCCCccccccHHHHhhhhceEEEEcCCHHHHHHHHHHHHHHHhcCCCCEEEEeChhhhhccCCccccccccccc
Confidence
Q ss_pred -------------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc-----------------
Q 038651 84 -------------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM----------------- 127 (324)
Q Consensus 84 -------------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~----------------- 127 (324)
|++||||+|++|+|+ +++.+++++|+|++|+||++|++|||+
T Consensus 190 ~~~~~~~~~~~~i~~~~~~l~~A~rPvIl~G~g~--~~a~~~l~~lae~~~~PV~~t~~gkg~~~~~hp~~~G~~g~~~~ 267 (603)
T 4feg_A 190 QTPLLPEPDVQAVTRLTQTLLAAERPLIYYGIGA--RKAGKELEQLSKTLKIPLMSTYPAKGIVADRYPAYLGSANRVAQ 267 (603)
T ss_dssp CCCCCCBCCHHHHHHHHHHHHHCSSEEEEECGGG--TTCHHHHHHHHHHHTCCEEECGGGTTSSCTTCTTBCCCCSSSSC
T ss_pred CCCCCCCCCHHHHHHHHHHHhcCCCeEEEECCCc--hhHHHHHHHHHHHHCCCEEEcCccccCCCCCChhhcccCcccCc
Confidence 678999999999999 578999999999999999999999987
Q ss_pred -----cccCCcEEEEEcCccCCcccccccccCCCC-EEEEcCCccccccCCChh------h---HHHHHHH---------
Q 038651 128 -----IVEFADAYIFVESIFNDYSSVGYSLLLNKK-AILMQPDRIVVANGLLLP------N---RNTSAYE--------- 183 (324)
Q Consensus 128 -----~l~~aDlvl~lG~~~~~~~t~~~~~~~~~~-iI~id~d~~~i~~~~~~~------d---~l~~~~~--------- 183 (324)
++++|||||++|++++.. ..+..+.+.. +||||+|+.+++ +.... | +|+++.+
T Consensus 268 ~~~~~~l~~aDlvl~iG~~~~~~--~~~~~~~~~~~~i~id~d~~~~~-~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~ 344 (603)
T 4feg_A 268 KPANEALAQADVVLFVGNNYPFA--EVSKAFKNTRYFLQIDIDPAKLG-KRHKTDIAVLADAQKTLAAILAQVSERESTP 344 (603)
T ss_dssp HHHHHHHHHCSEEEEESCCCTTT--TTTTTTTTCSEEEEEESCGGGTT-SSSCCSEEEESCHHHHHHHHHHTCCCCCCCH
T ss_pred HHHHHHHHhCCEEEEECCCCCcc--cccccCCCCCeEEEEeCCHHHhC-CccCCCEEEEeCHHHHHHHHHHhhhccCChH
Confidence 568999999999999632 1112223344 999999999998 33222 2 3332211
Q ss_pred ----------hhhhc----cCCCCCCC----------------------------------CC-CCCC--------CE--
Q 038651 184 ----------SYHRI----YVPHGIPL----------------------------------KS-NAHE--------PL-- 204 (324)
Q Consensus 184 ----------~~~~~----~~~~~~~~----------------------------------~~-~~~~--------~l-- 204 (324)
.|+.. ......+. .. .+.. .+
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~~G~ 424 (603)
T 4feg_A 345 WWQANLANVKNWRAYLASLEDKQEGPLQAYQVLRAVNKIAEPDAIYSIDVGDINLNANRHLKLTPSNRHITSNLFATMGV 424 (603)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCSSBCCHHHHHHHHHHHCCTTCEEEECSSHHHHHHHHHCCCCTTCEEECCCSSCCTTC
T ss_pred HHHHHHHHHHHHHHHhhhhhcCCCCCcCHHHHHHHHHHhCCCCCEEEECCchHHHHHHHhceeCCCCceecCcccccccc
Confidence 11100 00000000 00 0000 00
Q ss_pred ---------EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhh----CC-C-CCCCCCCCHH
Q 038651 205 ---------MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIH----DG-P-YNVIENWNYT 269 (324)
Q Consensus 205 ---------~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~----~~-~-~~~l~~~df~ 269 (324)
+..++..|++-+||++|.+. +|||+||+++++|+++||+||++|++++..| .. . .+++..+||.
T Consensus 425 ~l~~A~Gaala~~~~~vv~~~GDG~~~~~-~~~l~~a~~~~lp~~~vv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 503 (603)
T 4feg_A 425 GIPGAIAAKLNYPERQVFNLAGDGGASMT-MQDLATQVQYHLPVINVVFTNCQYGFIKDEQEDTNQNDFIGVEFNDIDFS 503 (603)
T ss_dssp HHHHHHHHHHHCTTSCEEEEEEHHHHHHH-GGGHHHHHHTTCCCEEEEEECSBCHHHHHHHHHHCSSCCCSSBCCCCCHH
T ss_pred hhHHHhhHHHhCCCCcEEEEeccHHHhhh-HHHHHHHHHHCcCeEEEEEECCchHHHHHHHHHhcCCCcccCcCCCCCHH
Confidence 33567788888899998876 5999999999999999999999999987654 22 2 2466789999
Q ss_pred HHHHHHHH-------------HHHHhHHh-CCCCeEEEEEEecCC
Q 038651 270 GLVEAFQN-------------AIETAAVE-KKDCLCFIEAIVHKD 300 (324)
Q Consensus 270 ~lA~a~G~-------------al~~a~~~-~~~~p~lIeV~id~~ 300 (324)
++|++||+ +|++|+ . +.+||+||||++++.
T Consensus 504 ~~a~a~G~~~~~v~~~~~l~~al~~a~-~~~~~gP~lIev~~~~~ 547 (603)
T 4feg_A 504 KIADGVHMQAFRVNKIEQLPDVFEQAK-AIAQHEPVLIDAVITGD 547 (603)
T ss_dssp HHHHHTTCEEEEECBGGGHHHHHHHHH-HHTTTSCEEEEEECCCC
T ss_pred HHHHHCCCeEEEECCHHHHHHHHHHHH-HhcCCCcEEEEEEeCCC
Confidence 99999998 666662 1 678999999999764
No 10
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=100.00 E-value=6.5e-52 Score=421.36 Aligned_cols=290 Identities=17% Similarity=0.182 Sum_probs=228.4
Q ss_pred CcCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh-
Q 038651 7 SSSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA- 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~- 83 (324)
..+||+ +++|+|+|.++++|++|.+|||++|+||||||||+|| +|||++|+|||++|+++||++||.|++|||+||+
T Consensus 31 fg~PG~~~~~l~~al~~~~~i~~i~~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~~~gv~~A~~~~vPll~itg~ 110 (590)
T 1ybh_A 31 FAYPGGASMEIHQALTRSSSIRNVLPRHEQGGVFAAEGYARSSGKPGICIATSGPGATNLVSGLADALLDSVPLVAITGQ 110 (590)
T ss_dssp EECCCGGGHHHHHHHHHCSSCEECCCSSHHHHHHHHHHHHHHHSSCEEEEECTTHHHHTTHHHHHHHHHHTCCEEEEEEE
T ss_pred EEcCCCchHHHHHHHhccCCccEEeeCCHHHHHHHHHHHHHHHCCCEEEEeccCchHHHHHHHHHHHHhhCCCEEEEeCc
Confidence 368999 9999999987667999999999999999999999999 9999999999999999999999999999999952
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 111 ~~~~~~g~~~~Q~~d~~~~~~~~~k~~~~v~~~~~i~~~l~~A~~~a~~~~~GPV~l~iP~dv~~~~~~~~~~~~~~~~~ 190 (590)
T 1ybh_A 111 VPRRMIGTDAFQETPIVEVTRSITKHNYLVMDVEDIPRIIEEAFFLATSGRPGPVLVDVPKDIQQQLAIPNWEQAMRLPG 190 (590)
T ss_dssp CCGGGTTTTCTTCCCHHHHHGGGSSEEEECCCGGGHHHHHHHHHHHHHSSSCCEEEEEEEHHHHHCEECCCTTCCCCCHH
T ss_pred CCccccCCCcccccCHHHHHHHHhCeEEecCCHHHHHHHHHHHHHHHhhCCCceEEEEeCcchhhhhccccccccccccc
Confidence
Q ss_pred --------------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc----------------
Q 038651 84 --------------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM---------------- 127 (324)
Q Consensus 84 --------------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~---------------- 127 (324)
|++||||+|++|+|+.+++ +++++|||++|+||++|++|||+
T Consensus 191 ~~~~~~~~~~~~~i~~~~~~l~~a~rpvIl~G~g~~~~~--~~l~~lae~~~~Pv~~t~~g~g~~~~~hp~~~G~~g~~~ 268 (590)
T 1ybh_A 191 YMSRMPKPPEDSHLEQIVRLISESKKPVLYVGGGCLNSS--DELGRFVELTGIPVASTLMGLGSYPADDELSLHMLGMHG 268 (590)
T ss_dssp HHHHSCCCCCHHHHHHHHHHHHHCSSEEEEECGGGTTCH--HHHHHHHHHHCCCEEECTTTTTSSCTTSTTEEEECSTTS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCcEEEECcccccCH--HHHHHHHHHhCCCEEEchhhcCcCCCCCchhcCCccccc
Confidence 5678999999999998776 99999999999999999999987
Q ss_pred ------cccCCcEEEEEcCccCCcccccccccCCCC-EEEEcCCccccccCCChh------h---HHHHHHH--------
Q 038651 128 ------IVEFADAYIFVESIFNDYSSVGYSLLLNKK-AILMQPDRIVVANGLLLP------N---RNTSAYE-------- 183 (324)
Q Consensus 128 ------~l~~aDlvl~lG~~~~~~~t~~~~~~~~~~-iI~id~d~~~i~~~~~~~------d---~l~~~~~-------- 183 (324)
++++||+||++|++++++.++.+..+.+.. +||||+|+.+++ +.... | +|+++.+
T Consensus 269 ~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~-~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~ 347 (590)
T 1ybh_A 269 TVYANYAVEHSDLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIG-KNKTPHVSVCGDVKLALQGMNKVLENRAEE 347 (590)
T ss_dssp CHHHHHHHHHCSEEEEESCCCCHHHHSSGGGTTTTSEEEEEESCTTTTT-SSSCCSEEEESCHHHHHHHHHHHHHHTHHH
T ss_pred CHHHHHHHHhCCEEEEEcCCCCccccCcccccCCCCeEEEEECCHHHhC-CCcCCCeEEecCHHHHHHHHHHhhhccccc
Confidence 467899999999999887776665554445 999999999998 32221 2 3332210
Q ss_pred ------hhhh-------ccCCC--C--CCC----------C-------------------------CCCCCCE-------
Q 038651 184 ------SYHR-------IYVPH--G--IPL----------K-------------------------SNAHEPL------- 204 (324)
Q Consensus 184 ------~~~~-------~~~~~--~--~~~----------~-------------------------~~~~~~l------- 204 (324)
.|.. .+... . ... . ..+...+
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~lp~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~g~~G~ 427 (590)
T 1ybh_A 348 LKLDFGVWRNELNVQKQKFPLSFKTFGEAIPPQYAIKVLDELTDGKAIISTGVGQHQMWAAQFYNYKKPRQWLSSGGLGA 427 (590)
T ss_dssp HCCCCHHHHHHHHHHHHHSCCCCCCCTTBCCHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHSCCCSSTTSEECCCSSCC
T ss_pred cccchHHHHHHHHHHHHhhhhhcccccCCcCHHHHHHHHHHhCCCCCEEEEcCcHHHHHHHHhcccCCCCeEEeCCCccc
Confidence 1210 00000 0 000 0 0000000
Q ss_pred ------------EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhh----CCC--CCCC---
Q 038651 205 ------------MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIH----DGP--YNVI--- 263 (324)
Q Consensus 205 ------------~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~----~~~--~~~l--- 263 (324)
...++..|++.+||++|.+. +|||+|+++|++|+++||+||++|++.+..+ ... ++++
T Consensus 428 ~G~~l~~AiGaala~~~~~vv~i~GDGs~~~~-~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~p 506 (590)
T 1ybh_A 428 MGFGLPAAIGASVANPDAIVVDIDGDGSFIMN-VQELATIRVENLPVKVLLLNNQHLGMVMQWEDRFYKANRAHTFLGDP 506 (590)
T ss_dssp TTCHHHHHHHHHHHCTTSCEEEEEEHHHHHHT-TTHHHHHHHTTCCEEEEEEECSBCHHHHHHHHHHSTTCCCSCBCSCG
T ss_pred ccchHHHHHHHHHhCCCCcEEEEEccchhhcc-HHHHHHHHHhCCCcEEEEEECCcchHHHHHHHHhcCCcccccccccc
Confidence 33467778888888888776 5999999999999999999999999988654 222 2334
Q ss_pred -----CCCCHHHHHHHHHH-------------HHHHhHHhCCCCeEEEEEEecCCCC
Q 038651 264 -----ENWNYTGLVEAFQN-------------AIETAAVEKKDCLCFIEAIVHKDDT 302 (324)
Q Consensus 264 -----~~~df~~lA~a~G~-------------al~~a~~~~~~~p~lIeV~id~~~~ 302 (324)
.++||.++|++||+ +|++++ +.++|+||||.+++.+.
T Consensus 507 ~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~--~~~gp~liev~~~~~~~ 561 (590)
T 1ybh_A 507 AQEDEIFPNMLLFAAACGIPAARVTKKADLREAIQTML--DTPGPYLLDVICPHQEH 561 (590)
T ss_dssp GGTTSCSSCHHHHHHHTTCCEEEECBHHHHHHHHHHHH--HSSSCEEEEEECCTTCC
T ss_pred ccccCCCCCHHHHHHHcCCeEEEeCCHHHHHHHHHHHH--hCCCCEEEEEEecCCcc
Confidence 26899999999998 677774 57899999999998663
No 11
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=100.00 E-value=1.4e-51 Score=424.63 Aligned_cols=290 Identities=20% Similarity=0.234 Sum_probs=230.4
Q ss_pred cCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh--
Q 038651 8 SSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA-- 83 (324)
Q Consensus 8 ~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~-- 83 (324)
.+||+ +++|+|+|.++++|++|.+|||++|+||||||||+|| +|||++|+|||++|++|||++||.|++|||+||+
T Consensus 102 g~PG~~~~pl~dal~~~~~i~~v~~~hE~~Aa~aAdGyAr~tGkpgvv~~TsGpG~~N~~~gia~A~~d~vPllvItG~~ 181 (677)
T 1t9b_A 102 GYPGGAILPVYDAIHNSDKFNFVLPKHEQGAGHMAEGYARASGKPGVVLVTSGPGATNVVTPMADAFADGIPMVVFTGQV 181 (677)
T ss_dssp ECCCGGGHHHHHHTTTCSSSEEECCSSHHHHHHHHHHHHHHHSSCEEEEECSTHHHHTTHHHHHHHHHHTCCEEEEEEEC
T ss_pred EecCccHHHHHHHHHhCCCCeEEEeCChHHHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 58999 9999999987668999999999999999999999999 9999999999999999999999999999999952
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 182 ~~~~~g~~a~Q~~Dq~~i~~~~tk~~~~v~~~~~i~~~i~~A~~~A~~grpGPV~l~lP~Dv~~~~~~~p~~~~~~~~~~ 261 (677)
T 1t9b_A 182 PTSAIGTDAFQEADVVGISRSCTKWNVMVKSVEELPLRINEAFEIATSGRPGPVLVDLPKDVTAAILRNPIPTKTTLPSN 261 (677)
T ss_dssp CTTTTTSCCTTCCCHHHHTGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEHHHHHSBCCSCBC--------
T ss_pred ChhhcCCCCccccCHHHHhhhheeEEEEcCCHHHHHHHHHHHHHHHhhCCCceEEEEcCHHHhhhhcccccccccccccc
Confidence
Q ss_pred ------------------------hhcCCCcEEEECCCCCcc-chHHHHHHHHHHhCCcEEecCCCCCc-----------
Q 038651 84 ------------------------LLKAVKPAMIGGPKLSVS-KATIAFVELADACGYAFAVMPSAKGM----------- 127 (324)
Q Consensus 84 ------------------------L~~AkrPvIl~G~g~~~~-~a~~~l~~lae~l~~Pv~tt~~gkg~----------- 127 (324)
|++||||+|++|+|+.++ ++.+++++|||++|+||++|++|||+
T Consensus 262 ~~~~~~~~~~~~~~~~~i~~a~~~L~~AkrPvIl~G~g~~~~~~~~~~l~~lae~~~~PV~tt~~gkg~~~~~hpl~lG~ 341 (677)
T 1t9b_A 262 ALNQLTSRAQDEFVMQSINKAADLINLAKKPVLYVGAGILNHADGPRLLKELSDRAQIPVTTTLQGLGSFDQEDPKSLDM 341 (677)
T ss_dssp ------------CHHHHHHHHHHHHHTCSSEEEEECGGGGGSTTHHHHHHHHHHHTTCCEEECGGGTTSSCTTSTTEEEE
T ss_pred cccCCCccccccCCHHHHHHHHHHHHhCCCeEEEECcccccCchhHHHHHHHHHHhCCCeeeccccCccCCCCCccccCc
Confidence 446899999999999766 47799999999999999999999997
Q ss_pred -----------cccCCcEEEEEcCccCCcccccccccCC-CC---------EEEEcCCccccccCCChh------h---H
Q 038651 128 -----------IVEFADAYIFVESIFNDYSSVGYSLLLN-KK---------AILMQPDRIVVANGLLLP------N---R 177 (324)
Q Consensus 128 -----------~l~~aDlvl~lG~~~~~~~t~~~~~~~~-~~---------iI~id~d~~~i~~~~~~~------d---~ 177 (324)
++++|||||+||++++++.++.+..+.+ .+ +||||+|+.+++ +.... | +
T Consensus 342 ~G~~g~~~~~~~l~~aDlvl~iG~r~~~~~t~~~~~~~~~~~~~~~~~~~~iI~idid~~~~~-~~~~~~~~i~gD~~~~ 420 (677)
T 1t9b_A 342 LGMHGCATANLAVQNADLIIAVGARFDDRVTGNISKFAPEARRAAAEGRGGIIHFEVSPKNIN-KVVQTQIAVEGDATTN 420 (677)
T ss_dssp CSTTSCHHHHHHHHHCSEEEEESCCCCTTTSCSGGGSSHHHHHHHHTTSCEEEEEESCGGGSS-SSSCCSEEEESCHHHH
T ss_pred CCccCcHHHHHHHhcCCEEEEECCccCcccccCccccCcccccccccCCceEEEEECCHHHhC-CcccCCEEEeCCHHHH
Confidence 4679999999999999888776654422 12 999999999987 32211 2 3
Q ss_pred HHHHHH---------hh-------hhccC----CC--CCCC----------C-CC--CCC--------------------
Q 038651 178 NTSAYE---------SY-------HRIYV----PH--GIPL----------K-SN--AHE-------------------- 202 (324)
Q Consensus 178 l~~~~~---------~~-------~~~~~----~~--~~~~----------~-~~--~~~-------------------- 202 (324)
|+.+.+ .| ++.+. +. .... . .. +.+
T Consensus 421 l~~L~~~l~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~l~~~~~~~iv~~~vg~~~~~~~~~~~~ 500 (677)
T 1t9b_A 421 LGKMMSKIFPVKERSEWFAQINKWKKEYPYAYMEETPGSKIKPQTVIKKLSKVANDTGRHVIVTTGVGQHQMWAAQHWTW 500 (677)
T ss_dssp HHHHHTTSCCCCCCHHHHHHHHHHHHHSCCCCCCCCTTCCBCHHHHHHHHHHHHHTTCSCEEEEECSSHHHHHHHHHSCC
T ss_pred HHHHHHHhhccccchHHHHHHHHHHHhcccccccccCCCCcCHHHHHHHHHHHhhcCCCCEEEEeCCchHHHHHHHhccc
Confidence 333211 12 11110 00 0000 0 00 110
Q ss_pred -----CE-------------------EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhh--
Q 038651 203 -----PL-------------------MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIH-- 256 (324)
Q Consensus 203 -----~l-------------------~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~-- 256 (324)
.+ +..|+..|++.+||++|.+. +|||+|+++|++|++|||+||++|++++.+|
T Consensus 501 ~~p~~~~~sg~~G~mG~~lpaAiGaalA~p~~~Vv~i~GDGsf~~~-~~eL~ta~~~~l~v~ivV~NN~~~g~~~~~~~~ 579 (677)
T 1t9b_A 501 RNPHTFITSGGLGTMGYGLPAAIGAQVAKPESLVIDIDGDASFNMT-LTELSSAVQAGTPVKILILNNEEQGMVTQWQSL 579 (677)
T ss_dssp CSTTCEECCCSSCCTTCHHHHHHHHHHHCTTSEEEEEEEHHHHHHH-GGGHHHHHHHTCCCEEEEEECSSCHHHHHHHHH
T ss_pred CCCCeEEeCCCcchhhchHHHHHHHHHhCCCCeEEEEEeehHHhcc-HHHHHHHHHhCCCeEEEEEeCCCchhhhhhhhh
Confidence 00 34578889999999999886 5999999999999999999999999988765
Q ss_pred --CCCC--CCCCCCCHHHHHHHHHH-------------HHHHhHHhCCCCeEEEEEEecCCC
Q 038651 257 --DGPY--NVIENWNYTGLVEAFQN-------------AIETAAVEKKDCLCFIEAIVHKDD 301 (324)
Q Consensus 257 --~~~~--~~l~~~df~~lA~a~G~-------------al~~a~~~~~~~p~lIeV~id~~~ 301 (324)
...| .++.++||.++|++||+ +|++++ +.++|+||||.+++.+
T Consensus 580 ~~~~~~~~~~~~~~d~~~la~a~G~~~~~v~~~~el~~al~~a~--~~~gp~lIev~~~~~~ 639 (677)
T 1t9b_A 580 FYEHRYSHTHQLNPDFIKLAEAMGLKGLRVKKQEELDAKLKEFV--STKGPVLLEVEVDKKV 639 (677)
T ss_dssp HSTTCCCSCCCCCCCHHHHHHHTTCEEEEECSHHHHHHHHHHHH--HCSSCEEEEEEBCSSC
T ss_pred hcCCCcccCcCCCCCHHHHHHHcCCeEEEECCHHHHHHHHHHHH--HCCCcEEEEEEecCCc
Confidence 2333 34678999999999998 666664 5789999999999865
No 12
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=100.00 E-value=2.4e-51 Score=415.41 Aligned_cols=293 Identities=16% Similarity=0.188 Sum_probs=231.5
Q ss_pred CcCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh-
Q 038651 7 SSSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA- 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~- 83 (324)
..+||+ +++|+|+|.+ ++|++|.+|||++|+||||||||+|| +|||++|+|||++|++|||++||.|++|||+||+
T Consensus 30 fg~PG~~~~~l~~al~~-~~i~~v~~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~~~~l~~A~~~~vPll~itg~ 108 (566)
T 1ozh_A 30 FGIPGAKIDKVFDSLLD-SSIRIIPVRHEANAAFMAAAVGRITGKAGVALVTSGPGCSNLITGMATANSEGDPVVALGGA 108 (566)
T ss_dssp EEECCTTTHHHHHHGGG-SSSEEEECSSHHHHHHHHHHHHHHHSSCEEEEECSTHHHHTTHHHHHHHHHHTCCEEEEEEE
T ss_pred EEcCCCchHHHHHHHHh-CCCcEEEeCCHHHHHHHHHHHHHHHCCCEEEEEccChHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 358999 9999999987 58999999999999999999999999 9999999999999999999999999999999952
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 109 ~~~~~~~~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~r~GPV~l~iP~dv~~~~~~~~~~~~~~~~~ 188 (566)
T 1ozh_A 109 VKRADKAKQVHQSMDTVAMFSPVTKYAIEVTAPDALAEVVSNAFRAAEQGRPGSAFVSLPQDVVDGPVSGKVLPASGAPQ 188 (566)
T ss_dssp CCTTTC------CCCHHHHHGGGCSEEEECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEHHHHHSCEEECCCCCCCSCE
T ss_pred CccccCCCCcccccCHHHHHHHHhheEEEcCCHHHHHHHHHHHHHHHhcCCCCeEEEEeChhhhhccccccccccccccC
Confidence
Q ss_pred ---------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc---------------------
Q 038651 84 ---------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM--------------------- 127 (324)
Q Consensus 84 ---------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~--------------------- 127 (324)
|++||||+|++|+|+.++++.+++++|+|++|+||++|++|||.
T Consensus 189 ~~~~~~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~kg~~~~~~p~~~~G~~g~~~~~~~ 268 (566)
T 1ozh_A 189 MGAAPDDAIDQVAKLIAQAKNPIFLLGLMASQPENSKALRRLLETSHIPVTSTYQAAGAVNQDNFSRFAGRVGLFNNQAG 268 (566)
T ss_dssp ECCSCHHHHHHHHHHHHHCSSEEEEECGGGGSGGGHHHHHHHHHHHCCCEEECGGGTTTCCTTTCTTEEEECSSBTTCHH
T ss_pred CCCCCHHHHHHHHHHHHcCCCeEEEECCCcccccHHHHHHHHHHHHCCCEEEccccCCcCCCCChHhhcCCCcccCCHHH
Confidence 77899999999999999999999999999999999999999985
Q ss_pred --cccCCcEEEEEcCccCCcccccccccCCCC-EEEEcCCccccccCCChh---------hHHHHHHH---------hhh
Q 038651 128 --IVEFADAYIFVESIFNDYSSVGYSLLLNKK-AILMQPDRIVVANGLLLP---------NRNTSAYE---------SYH 186 (324)
Q Consensus 128 --~l~~aDlvl~lG~~~~~~~t~~~~~~~~~~-iI~id~d~~~i~~~~~~~---------d~l~~~~~---------~~~ 186 (324)
++++||+||++|+.+.+..+..|. .+.. +||||+|+.+++ +.... ++|+++.+ .|.
T Consensus 269 ~~~l~~aDlvl~lG~~~~~~~~~~~~--~~~~~~i~id~d~~~~~-~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~w~ 345 (566)
T 1ozh_A 269 DRLLQLADLVICIGYSPVEYEPAMWN--SGNATLVHIDVLPAYEE-RNYTPDVELVGDIAGTLNKLAQNIDHRLVLSPQA 345 (566)
T ss_dssp HHHHHHCSEEEEESCCGGGSCGGGTC--CSCSEEEEEESSCCCCB-TTBCCSEEEESCHHHHHHHHHHTCCSCCCCCHHH
T ss_pred HHHHHhCCEEEEECCCCCcCCccccC--CCCCcEEEEeCCHHHhC-CCCCCCEEEEeCHHHHHHHHHHhccccCCcHHHH
Confidence 346899999999965444333343 2234 999999999998 32221 23333221 110
Q ss_pred -------hc----cC----CCCCC-C----------CCCCCC-------------------------CE-----------
Q 038651 187 -------RI----YV----PHGIP-L----------KSNAHE-------------------------PL----------- 204 (324)
Q Consensus 187 -------~~----~~----~~~~~-~----------~~~~~~-------------------------~l----------- 204 (324)
+. .. ....+ . ...+.+ .+
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~l~~~l~~~~iv~~d~G~~~~~~~~~~~~~~~~~~~~~~g~g~mG~~ 425 (566)
T 1ozh_A 346 AEILRDRQHQRELLDRRGAQLNQFALHPLRIVRAMQDIVNSDVTLTVDMGSFHIWIARYLYTFRARQVMISNGQQTMGVA 425 (566)
T ss_dssp HHHHHHHHHHHHHHHC-CCCCCCSSBCHHHHHHHHHHHCCTTEEEEECSSHHHHHHHHTGGGCCCSEEECCCTTCCTTCH
T ss_pred HHHHHHHHHhHhhhhhccccCCCCCcCHHHHHHHHHHhCCCCCEEEEcCcHHHHHHHHhcccCCCCeEEeCCCcccccch
Confidence 00 00 00000 0 000000 00
Q ss_pred --------EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhh----CCCC-CCCCCCCHHHH
Q 038651 205 --------MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIH----DGPY-NVIENWNYTGL 271 (324)
Q Consensus 205 --------~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~----~~~~-~~l~~~df~~l 271 (324)
+..++..|++.+||++|.+. +|||+|++++++|+++||+||++|++++..+ ...| +++.++||.++
T Consensus 426 l~~AiGaala~~~~~vv~i~GDG~~~~~-~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 504 (566)
T 1ozh_A 426 LPWAIGAWLVNPERKVVSVSGDGGFLQS-SMELETAVRLKANVLHLIWVDNGYNMVAIQEEKKYQRLSGVEFGPMDFKAY 504 (566)
T ss_dssp HHHHHHHHHHSTTSEEEEEEEHHHHHHH-TTHHHHHHHHTCCEEEEEEECSBCHHHHHHHHHHHSSCCSCBCCCCCHHHH
T ss_pred HHHHHHHHHhCCCCCEEEEEcChHHhcc-HHHHHHHHHhCCCcEEEEEECCchhHHHHHHHHhcCCCccCcCCCCCHHHH
Confidence 34577888888999998886 5999999999999999999999999998765 4455 57788999999
Q ss_pred HHHHHH-------------HHHHhHHhCCCCeEEEEEEecCCCCcHHHH
Q 038651 272 VEAFQN-------------AIETAAVEKKDCLCFIEAIVHKDDTGKELL 307 (324)
Q Consensus 272 A~a~G~-------------al~~a~~~~~~~p~lIeV~id~~~~~~~~~ 307 (324)
|++||+ +|++++ +.++|+||||++++++. |...
T Consensus 505 a~a~G~~~~~v~~~~el~~al~~a~--~~~gp~liev~~~~~~~-p~~~ 550 (566)
T 1ozh_A 505 AESFGAKGFAVESAEALEPTLRAAM--DVDGPAVVAIPVDYRDN-PLLM 550 (566)
T ss_dssp HHTTTSEEEECCSGGGHHHHHHHHH--HSSSCEEEEEEBCCTTH-HHHH
T ss_pred HHHcCCeEEEeCCHHHHHHHHHHHH--hCCCCEEEEEEeCCCcC-CCcc
Confidence 999998 777775 57899999999999876 4443
No 13
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=100.00 E-value=5.7e-51 Score=409.28 Aligned_cols=288 Identities=17% Similarity=0.166 Sum_probs=227.7
Q ss_pred CcCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh-
Q 038651 7 SSSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA- 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~- 83 (324)
..+||+ +++|+|+|. ++|++|.+|||++|+||||||||+|| +|||++|+|||++|+++||++||.|++|||+||+
T Consensus 21 fg~PG~~~~~l~~al~--~~i~~i~~~~E~~Aa~~A~Gyar~tg~~~v~~~tsGpG~~N~~~~l~~A~~~~~Pll~itg~ 98 (528)
T 1q6z_A 21 FGNPGSNALPFLKDFP--EDFRYILALQEACVVGIADGYAQASRKPAFINLHSAAGTGNAMGALSNAWNSHSPLIVTAGQ 98 (528)
T ss_dssp EECCCGGGHHHHTTCC--TTCEEEECSSHHHHHHHHHHHHHHHTSCEEEEEEHHHHHHHTHHHHHHHHHTTCCEEEEEEE
T ss_pred EECCCcchHHHHHHHh--hcCcEEEECcHHHHHHHHHHHHHHhCCCEEEEEcCChHHHHHHHHHHHHhhcCCCEEEEeCC
Confidence 368999 999999994 47999999999999999999999999 9999999999999999999999999999999942
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 99 ~~~~~~~~~~~q~~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~a~~~~~GPV~l~iP~d~~~~~~~~~~~~~~~~~ 178 (528)
T 1q6z_A 99 QTRAMIGVEALLTNVDAANLPRPLVKWSYEPASAAEVPHAMSRAIHMASMAPQGPVYLSVPYDDWDKDADPQSHHLFDRH 178 (528)
T ss_dssp CCHHHHTTTCTTCCTTGGGSSTTSCSCEECCSSGGGHHHHHHHHHHHHHSSSCCCEEEEEEGGGTTSBCCGGGGGGTTCC
T ss_pred CcccccCCCcccccccHHHHHHHhhHhhhcCCCHHHHHHHHHHHHHHHhcCCCCcEEEEechhhhhCccccccccccccC
Confidence
Q ss_pred ------------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcE-EecCCCCCc-----------------
Q 038651 84 ------------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAF-AVMPSAKGM----------------- 127 (324)
Q Consensus 84 ------------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv-~tt~~gkg~----------------- 127 (324)
|++||||+|++|+|+.++++.+++++|+|++|+|| ++|++|||+
T Consensus 179 ~~~~~~~~~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~~Pv~~~~~~g~g~~~~~~p~~~G~~g~~~~ 258 (528)
T 1q6z_A 179 VSSSVRLNDQDLDILVKALNSASNPAIVLGPDVDAANANADCVMLAERLKAPVWVAPSAPRCPFPTRHPCFRGLMPAGIA 258 (528)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSCEEEECHHHHHTTCHHHHHHHHHHHTCCEEECSSCSBCCSCTTSTTEEEECCSCHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCeEEEECCccchhhHHHHHHHHHHHHCCCEEEeccCccccCCCCCccccCcCCCCcH
Confidence 66799999999999988899999999999999999 888899987
Q ss_pred ----cccCCcEEEEEcCccCCcccccccccC-CCC-EEEEcCCccccccCCChh--------hHHHHHHHhhhh------
Q 038651 128 ----IVEFADAYIFVESIFNDYSSVGYSLLL-NKK-AILMQPDRIVVANGLLLP--------NRNTSAYESYHR------ 187 (324)
Q Consensus 128 ----~l~~aDlvl~lG~~~~~~~t~~~~~~~-~~~-iI~id~d~~~i~~~~~~~--------d~l~~~~~~~~~------ 187 (324)
++++||+||++|+++.++.++.|...+ +.. +||||+|+.++++ .... ++++++.+....
T Consensus 259 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~~-~~~~~~i~~d~~~~l~~L~~~~~~~~~~~~ 337 (528)
T 1q6z_A 259 AISQLLEGHDVVLVIGAPVFRYHQYDPGQYLKPGTRLISVTCDPLEAAR-APMGDAIVADIGAMASALANLVEESSRQLP 337 (528)
T ss_dssp HHHHHHTTCSEEEEESSCTTCCCSCCCSCSSCTTCEEEEEESCHHHHHH-CSSSEEEESCHHHHHHHHHHHSCCCCSCCC
T ss_pred HHHHHHhcCCEEEEECCCCccccccCcCCcCCCCCeEEEEeCCHHHhCC-CCCCeeEeCCHHHHHHHHHHHhhccccchH
Confidence 467999999999999998887776543 344 9999999998873 2111 344444321110
Q ss_pred ccCCCCCCCCCCCCCCE-------------------------------------------------------------Ee
Q 038651 188 IYVPHGIPLKSNAHEPL-------------------------------------------------------------ML 206 (324)
Q Consensus 188 ~~~~~~~~~~~~~~~~l-------------------------------------------------------------~~ 206 (324)
.+........ .+..++ +.
T Consensus 338 ~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~~~~gg~~G~~l~~A~G~a~a 416 (528)
T 1q6z_A 338 TAAPEPAKVD-QDAGRLHPETVFDTLNDMAPENAIYLNESTSTTAQMWQRLNMRNPGSYYFCAAGGLGFALPAAIGVQLA 416 (528)
T ss_dssp CCCCCCCCCC-CCSSSBCHHHHHHHHHHHSCTTCEEEEECTTSHHHHHHHCCCCSSSCEEECTTCCTTSHHHHHHHHHHH
T ss_pred HHHhhhhccc-ccCCCcCHHHHHHHHHhhCCCCeEEEECCcccHHHHHHhccccCCCcEECCCCccccchHHHHHHHHHh
Confidence 0000000000 000000 23
Q ss_pred cCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhh----CC--CCCCCCCCCHHHHHHHHHH---
Q 038651 207 SGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIH----DG--PYNVIENWNYTGLVEAFQN--- 277 (324)
Q Consensus 207 ~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~----~~--~~~~l~~~df~~lA~a~G~--- 277 (324)
.++..|++.+||++|.+. +|||+|++++++|+++||+||++|++++..+ .. .+++++++||.++|++||+
T Consensus 417 ~~~~~vv~~~GDG~~~~~-~~~l~~a~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~a~a~G~~~~ 495 (528)
T 1q6z_A 417 EPERQVIAVIGDGSANYS-ISALWTAAQYNIPTIFVIMNNGTYGALRWFAGVLEAENVPGLDVPGIDFRALAKGYGVQAL 495 (528)
T ss_dssp CTTSCEEEEEEHHHHTTT-GGGHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHTCCSCCSCBCCCCCHHHHHHHHTCEEE
T ss_pred CCCCcEEEEECCcHHHhh-HHHHHHHHHhCCCeEEEEEeCCcchHhHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCeEE
Confidence 456667777788877766 4999999999999999999999999988764 12 2466788999999999998
Q ss_pred ----------HHHHhHHhCCCCeEEEEEEecCCC
Q 038651 278 ----------AIETAAVEKKDCLCFIEAIVHKDD 301 (324)
Q Consensus 278 ----------al~~a~~~~~~~p~lIeV~id~~~ 301 (324)
+|++++ +.++|+||||++++++
T Consensus 496 ~v~~~~~l~~al~~a~--~~~gp~liev~~~~~~ 527 (528)
T 1q6z_A 496 KADNLEQLKGSLQEAL--SAKGPVLIEVSTVSPV 527 (528)
T ss_dssp EESSHHHHHHHHHHHH--TCSSCEEEEEEBCC--
T ss_pred EeCCHHHHHHHHHHHH--HCCCcEEEEEEecCCC
Confidence 666664 6799999999999864
No 14
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=100.00 E-value=1.2e-51 Score=418.47 Aligned_cols=297 Identities=15% Similarity=0.071 Sum_probs=208.4
Q ss_pred CcCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh-
Q 038651 7 SSSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA- 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~- 83 (324)
..+||+ +++|+|+|.++++|++|.+|||++|+||||||||+|| +|||++|+|||++|++|||++||.|++|||+||+
T Consensus 30 Fg~PG~~~~~l~dal~~~~~i~~i~~~hE~~Aa~aAdGyAr~tG~pgv~~~TsGpG~~N~~~gia~A~~d~vPll~itG~ 109 (578)
T 3lq1_A 30 IISPGSRSTPLALMMAEHPILKIYVDVDERSAGFFALGLAKASKRPVVLLCTSGTAAANYFPAVAEANLSQIPLIVLTAD 109 (578)
T ss_dssp EECCCTTTHHHHHHHHHCSSCEEEECSSHHHHHHHHHHHHHHHCCCEEEEECSSHHHHTTHHHHHHHHHTTCCEEEEEEE
T ss_pred EECCCCccHHHHHHHHhCCCceEEEecCcHHHHHHHHHHHHhhCCCEEEEECCchhhhhhhHHHHHHHhcCCCeEEEeCC
Confidence 358999 9999999988678999999999999999999999999 9999999999999999999999999999999952
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 110 ~p~~~~g~~~~Qe~d~~~~~~~~tk~~~~v~~~~~~~~~~~~i~~~l~~A~~~A~~gr~GPV~l~iP~d~~~~~~~~~~~ 189 (578)
T 3lq1_A 110 RPHELRNVGAPQAMDQLHLYGSHVKDFTDMALPENSEEMLRYAKWHGSRAVDIAMKTPRGPVHLNFPLREPLVPILEPSP 189 (578)
T ss_dssp CCGGGTTSSCTTCCCCTTTTGGGSSEEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCCEEEEEECCSCCCCCCSSCC
T ss_pred CCHHhhcCCCCCCcCHhhHHhhheeeEeecCCCCCchHHHHHHHHHHHHHHHHhhCCCCCcEEEECccCCCCCCCcccch
Confidence
Q ss_pred -------------------------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCC-CCCc----
Q 038651 84 -------------------------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPS-AKGM---- 127 (324)
Q Consensus 84 -------------------------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~-gkg~---- 127 (324)
|++ |||+|++|+|+.+ ++.+++++|+|++|+||++|++ +|+.
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~L~~-~rPvIl~G~g~~~-~~~~~l~~lae~~~~PV~~t~~~~~~~~~~~ 267 (578)
T 3lq1_A 190 FTATGKKHHHVHIYYTHEVLDDSSIQKMVTECTG-KKGVFVVGPIDKK-ELEQPMVDLAKKLGWPILADPLSGLRSYGAL 267 (578)
T ss_dssp C------------CCEEEEECHHHHHHHHHHTTT-SCEEEEECSCCCT-TCHHHHHHHHHHHTCCEEECGGGSTTSBSSC
T ss_pred hcccCccccccccccCccCCChHHHHHHHHHhcc-CCeEEEECCCCCh-HHHHHHHHHHHhcCcEEEEecCCCCCCCCCC
Confidence 334 8999999999986 5679999999999999999854 5764
Q ss_pred ------------------cccCCcEEEEEcCccCCcccccccccCCCC-EEEEcCCccccccCCChh---------hHHH
Q 038651 128 ------------------IVEFADAYIFVESIFNDYSSVGYSLLLNKK-AILMQPDRIVVANGLLLP---------NRNT 179 (324)
Q Consensus 128 ------------------~l~~aDlvl~lG~~~~~~~t~~~~~~~~~~-iI~id~d~~~i~~~~~~~---------d~l~ 179 (324)
.+++|||||.+|+++.++.+..|....+.. +||||+|+.+++ +.... ++|+
T Consensus 268 hp~~~g~~~~~~~~~~~~~~~~aDlvl~~G~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~-~~~~~~~~i~~d~~~~l~ 346 (578)
T 3lq1_A 268 DEVVIDQYDAFLKEAEIIDKLTPEVVIRFGSMPVSKPLKNWLEQLSDIRFYVVDPGAAWKD-PIKAVTDMIHCDERFLLD 346 (578)
T ss_dssp CSSEECCHHHHTTSHHHHHHTCCSEEEEESSCCSCHHHHHHHHHCCSSEEEEECTTCCCCC-TTCCCSEEECSCHHHHHH
T ss_pred CccccccHHHHhcCccccccCCCCEEEEeCCcccchhHHHHHhcCCCCEEEEECCCCCcCC-CCcCceEEEEeCHHHHHH
Confidence 256899999999998765544454332334 999999998887 32211 2333
Q ss_pred HHHH---------hh----h-------h-c---cCCC--CCCC----------C-------------------CCC-CCC
Q 038651 180 SAYE---------SY----H-------R-I---YVPH--GIPL----------K-------------------SNA-HEP 203 (324)
Q Consensus 180 ~~~~---------~~----~-------~-~---~~~~--~~~~----------~-------------------~~~-~~~ 203 (324)
++.+ .| + . . .... ..+. . ..+ ..+
T Consensus 347 ~L~~~l~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~~~~~~~~~~~~~~~~~~~~ 426 (578)
T 3lq1_A 347 IMQQNMPDDAKDAAWLNGWTSYNKVAREIVLAEMANTTILEEGKIVAELRRLLPDKAGLFIGNSMPIRDVDTYFSQIDKK 426 (578)
T ss_dssp HHHHHSCSTTCCHHHHHHHHHHHHHHHHHHHHHSCC----CTTHHHHHHHHHSCSEEEEEECSSHHHHHHHHHCCCCSSE
T ss_pred HHHhhccCCCCcHHHHHHHHHHHHHHhHHHHHhhhcCCCCCHHHHHHHHHHhCCCCCeEEEeCccHHHHHHHhhcccCCC
Confidence 2211 11 0 0 0 0000 0000 0 000 000
Q ss_pred ---------------E-----EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhh---h-CCC
Q 038651 204 ---------------L-----MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEI---H-DGP 259 (324)
Q Consensus 204 ---------------l-----~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~---~-~~~ 259 (324)
+ ...++..|++.+||++|.|. +|||+|++||++|+++||+||++|++++.+ + ...
T Consensus 427 ~~~~~~~G~~G~~g~l~~AiGaa~~~~~vv~i~GDGsf~~~-~~eL~ta~~~~l~~~ivv~NN~~~g~~~~~~~~~~~~~ 505 (578)
T 3lq1_A 427 IKMLANRGANGIDGVVSSALGASVVFQPMFLLIGDLSFYHD-MNGLLMAKKYKMNLTIVIVNNDGGGIFSFLPQANEPKY 505 (578)
T ss_dssp EEEECCCSSCCSSSHHHHHHHHTTTSSSEEEEEEHHHHHHT-GGGGHHHHHTTCCEEEEEECCC----------------
T ss_pred ceEEeCCCccccccHHHHHHHHhcCCCCEEEEEchHHHHhh-HHHHHhhccCCCCeEEEEEECCcCccccccccccccch
Confidence 1 22357889999999999987 599999999999999999999999999854 2 122
Q ss_pred C----CCCCCCCHHHHHHHHHH-------------HHHHhHHhCCCCeEEEEEEecCCCCcHHHHHH
Q 038651 260 Y----NVIENWNYTGLVEAFQN-------------AIETAAVEKKDCLCFIEAIVHKDDTGKELLKW 309 (324)
Q Consensus 260 ~----~~l~~~df~~lA~a~G~-------------al~~a~~~~~~~p~lIeV~id~~~~~~~~~~~ 309 (324)
| ....++||.++|++||+ +|++++ +.++|+||||.+++++....+..+
T Consensus 506 ~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~--~~~gp~liev~~~~~~~~~~~~~~ 570 (578)
T 3lq1_A 506 FESLFGTSTELDFRFAAAFYDADYHEAKSVDELEEAIDKAS--YHKGLDIIEVKTNRHENKANHQAL 570 (578)
T ss_dssp ---------CCCTHHHHHHTTCEEEECCSHHHHHHHHHHHT--TSSSEEEEEEC-------------
T ss_pred hhhhccCCCCCCHHHHHHHcCCceEecCCHHHHHHHHHHHH--hCCCCEEEEEECCccccHHHHHhh
Confidence 2 23357999999999998 677764 689999999999998866555443
No 15
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=100.00 E-value=3.1e-51 Score=414.20 Aligned_cols=296 Identities=21% Similarity=0.241 Sum_probs=237.7
Q ss_pred CcCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh-
Q 038651 7 SSSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA- 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~- 83 (324)
..+||+ +++|+|+|.++ +|++|.+|||++|+||||||||+|| +|||++|+|||++|++|||++||.|++|||+||+
T Consensus 23 fg~PG~~~~~l~~al~~~-~i~~i~~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~~~~l~~A~~~~~Pll~itg~ 101 (563)
T 2uz1_A 23 FGLHGAHIDTIFQACLDH-DVPIIDTRHEAAAGHAAEGYARAGAKLGVALVTAGGGFTNAVTPIANAWLDRTPVLFLTGS 101 (563)
T ss_dssp EECCCGGGHHHHHHHHHH-TCCEEECSSHHHHHHHHHHHHHHHTSCEEEEECTTHHHHTTHHHHHHHHHHTCCEEEEEEE
T ss_pred EECCCCchHHHHHHHHhc-CCcEEeeCCHHHHHHHHHHHHHHhCCCEEEEEccCccHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 468999 99999999875 5999999999999999999999999 9999999999999999999999999999999952
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 102 ~~~~~~~~~~~Q~~~d~~~~~~~~tk~~~~v~~~~~~~~~l~~A~~~a~~~~~GPV~l~iP~dv~~~~~~~~~~~~~~~~ 181 (563)
T 2uz1_A 102 GALRDDETNTLQAGIDQVAMAAPITKWAHRVMATEHIPRLVMQAIRAALSAPRGPVLLDLPWDILMNQIDEDSVIIPDLV 181 (563)
T ss_dssp CCGGGTTSCCTTCCCCHHHHHGGGCSEEEECCCGGGHHHHHHHHHHHHHSSSCCCEEEEEEHHHHHCEEEGGGSCCCCCC
T ss_pred CCcccCCchhhhhhccHHHHhhhhhceEEEcCCHHHHHHHHHHHHHHhcCCCCceEEEEeCHHHhhhhcccccccccccc
Confidence
Q ss_pred -------------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc---c-------------
Q 038651 84 -------------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM---I------------- 128 (324)
Q Consensus 84 -------------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~---~------------- 128 (324)
|++||||+|++|+|+.++++.+++++|+|++|+||++|++|||. -
T Consensus 182 ~~~~~~~~~~~~v~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~~g~~~~~~~p~~~G~~g~~~ 261 (563)
T 2uz1_A 182 LSAHGARPDPADLDQALALLRKAERPVIVLGSEASRTARKTALSAFVAATGVPVFADYEGLSMLSGLPDAMRGGLVQNLY 261 (563)
T ss_dssp CCSSCCBCCHHHHHHHHHHHHHCSSEEEEECHHHHHHTCHHHHHHHHHHHCCCEEECGGGGGGGTTSCGGGEEEEGGGGG
T ss_pred cCCCCCCCCHHHHHHHHHHHHcCCCcEEEECCccccccHHHHHHHHHHHhCCcEEEcCcccCcCCCCCChhhcCCCCCCC
Confidence 56789999999999998899999999999999999999999997 2
Q ss_pred -----ccCCcEEEEEcCccCCcccccccccCC-CC-EEEEcCCccccccCCChh---------hHHHHHHH---------
Q 038651 129 -----VEFADAYIFVESIFNDYSSVGYSLLLN-KK-AILMQPDRIVVANGLLLP---------NRNTSAYE--------- 183 (324)
Q Consensus 129 -----l~~aDlvl~lG~~~~~~~t~~~~~~~~-~~-iI~id~d~~~i~~~~~~~---------d~l~~~~~--------- 183 (324)
+++||+||++|+++.++.++.|..+.+ .. +||||+|+.+++ +.... ++|+++.+
T Consensus 262 ~~~~~~~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~-~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~ 340 (563)
T 2uz1_A 262 SFAKADAAPDLVLMLGARFGLNTGHGSGQLIPHSAQVIQVDPDACELG-RLQGIALGIVADVGGTIEALAQATAQDAAWP 340 (563)
T ss_dssp GTTTTTCCCSEEEEESCCSSGGGTTTSCSSSCTTSEEEEECSCGGGTT-SSSCCSEEECSCHHHHHHHHHHHHTTSCCCC
T ss_pred HHHHhhcCCCEEEEECCCCcccccccccccCCCCCeEEEEECCHHHhC-CCCCCCeEEEcCHHHHHHHHHHhhhhccccc
Confidence 688999999999999988877765555 44 999999999987 32211 22322210
Q ss_pred ---hh--------hhcc-----C---CCCCC--------CCCCCCC-------------------------CE-------
Q 038651 184 ---SY--------HRIY-----V---PHGIP--------LKSNAHE-------------------------PL------- 204 (324)
Q Consensus 184 ---~~--------~~~~-----~---~~~~~--------~~~~~~~-------------------------~l------- 204 (324)
.| ++.+ . ..... ....+.+ .+
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~iv~~d~G~~~~~~~~~~~~~~~~~~~~~~g~g~ 420 (563)
T 2uz1_A 341 DRGDWCAKVTDLAQERYASIAAKSSSEHALHPFHASQVIAKHVDAGVTVVADGALTYLWLSEVMSRVKPGGFLCHGYLGS 420 (563)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHCCCSSSCCHHHHHHHHHTTCSTTEEEEECSSHHHHHHHHHHTTSCCSEEECCCTTCC
T ss_pred CcHHHHHHHHHHHHHHhHhhhhccccCCCcCHHHHHHHHHHhCCCCcEEEEcCchHHHHHHHhccccCCCeEECCCCCcc
Confidence 01 1000 0 00000 0000000 00
Q ss_pred ------------Eec--CCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhh----CC---CCCCC
Q 038651 205 ------------MLS--GNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIH----DG---PYNVI 263 (324)
Q Consensus 205 ------------~~~--~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~----~~---~~~~l 263 (324)
+.. |+..|++.+||++|.+. +|||+|++++++|+++||+||++|++++..| .. .++++
T Consensus 421 ~G~~l~~AiGaa~a~~~~~~~vv~i~GDG~~~~~-~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~~~~ 499 (563)
T 2uz1_A 421 MGVGFGTALGAQVADLEAGRRTILVTGDGSVGYS-IGEFDTLVRKQLPLIVIIMNNQSWGATLHFQQLAVGPNRVTGTRL 499 (563)
T ss_dssp TTTHHHHHHHHHHHHHHHTCEEEEEEEHHHHGGG-TTHHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHTCTTCCCSCBC
T ss_pred ccChHHHHHHHHHHhhCCCCeEEEEEccHHHhCC-HHHHHHHHHhCCCeEEEEEeCCcchHHHHHHHHhcCCCcccCCcC
Confidence 234 78889999999999887 5999999999999999999999999988654 22 23667
Q ss_pred CCCCHHHHHHHHHH-------------HHHHhHHhCCCCeEEEEEEecCCCCcHHHH
Q 038651 264 ENWNYTGLVEAFQN-------------AIETAAVEKKDCLCFIEAIVHKDDTGKELL 307 (324)
Q Consensus 264 ~~~df~~lA~a~G~-------------al~~a~~~~~~~p~lIeV~id~~~~~~~~~ 307 (324)
.++||.++|++||+ +|++++ +.++|+||||++++++.+|...
T Consensus 500 ~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a~--~~~gp~liev~~~~~~~~p~~~ 554 (563)
T 2uz1_A 500 ENGSYHGVAAAFGADGYHVDSVESFSAALAQAL--AHNRPACINVAVALDPIPPEEL 554 (563)
T ss_dssp CCCCHHHHHHHTTCEEEEECSHHHHHHHHHHHH--HSSSCEEEEEECCSCCCCHHHH
T ss_pred CCCCHHHHHHHcCCeEEEeCCHHHHHHHHHHHH--HCCCCEEEEEEeccccCCchHH
Confidence 78999999999998 677764 5789999999999988877544
No 16
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=100.00 E-value=4.4e-51 Score=415.25 Aligned_cols=292 Identities=19% Similarity=0.258 Sum_probs=233.0
Q ss_pred CcCCCC-chHHHHhhhcC-CCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh
Q 038651 7 SSSPAD-SSSLLDHLIAE-PGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~-~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~ 83 (324)
..+||+ +++|+|+|.++ ++|++|.+|||++|+||||||||+|| +|||++|+|||++|+++||++||.|++|||+||+
T Consensus 23 fg~PG~~~~~l~~al~~~~~~i~~v~~~hE~~Aa~~A~GyAr~tg~p~v~~~TsGpG~~N~~~gv~~A~~~~vPll~itg 102 (589)
T 2pgn_A 23 VGFIGHTSHFVADAFSKSHLGKRVINPATELGGAWMVNGYNYVKDRSAAVGAWHCVGNLLLHAAMQEARTGRIPAVHIGL 102 (589)
T ss_dssp EEECSGGGHHHHHHHHTSTTSTTCBCCSSHHHHHHHHHHHHHHHTSCCEEEEEEGGGGGGCHHHHHHHHHTTCCEEEEEE
T ss_pred EEecCCchHHHHHHHHhcCCCCeEEEeCcHHHHHHHHHHHHHHHCCCEEEEEecCchHHHHHHHHHHHHhcCCCEEEEec
Confidence 368999 99999999876 67999999999999999999999999 9999999999999999999999999999999952
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 103 ~~~~~~~~~~~~~Q~~d~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv~~~~~~~~~~~~~~~~ 182 (589)
T 2pgn_A 103 NSDGRLAGRSEAAQQVPWQSFTPIARSTQRVERLDKVGEAIHEAFRVAEGHPAGPAYVDIPFDLTADQIDDKALVPRGAT 182 (589)
T ss_dssp ESCGGGTTCTTCSSCCCGGGGTTTSSEEEECCSGGGHHHHHHHHHHHHTSSSCCEEEEEEETHHHHCEEECTTTSCCCCC
T ss_pred CCcccccCCCCcccccChhhccccEEEEeecCCHHHHHHHHHHHHHHHhcCCCccEEEEeCHhhhhcccccccccccccc
Confidence
Q ss_pred -------------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc-----------------
Q 038651 84 -------------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM----------------- 127 (324)
Q Consensus 84 -------------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~----------------- 127 (324)
|++||||+|++|+|+.++++.+++++|+|++|+||++|++|||.
T Consensus 183 ~~~~~~~~~~~~v~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~~g~~~~~~p~~~G~~g~~~~ 262 (589)
T 2pgn_A 183 RAKSVLHAPNEDVREAAAQLVAAKNPVILAGGGVARSGGSEALLKLAEMVGVPVVTTSTGAGVFPETHALAMGSAGFCGW 262 (589)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHCSSEEEEECHHHHHHTCHHHHHHHHHHHTCCEEECTTTTTSSCTTSTTEEEECSTTSC
T ss_pred cCCccCCChHHHHHHHHHHHHhCCCeEEEECCCcccccHHHHHHHHHHHhCCCEEEccccCccCCCCChhhcCCccccCC
Confidence 23468999999999998899999999999999999999999997
Q ss_pred -----cccCCcEEEEEcCccCCcccccccccCCCC-EEEEcCCccccccCCChh---------hHHHHHHH---------
Q 038651 128 -----IVEFADAYIFVESIFNDYSSVGYSLLLNKK-AILMQPDRIVVANGLLLP---------NRNTSAYE--------- 183 (324)
Q Consensus 128 -----~l~~aDlvl~lG~~~~~~~t~~~~~~~~~~-iI~id~d~~~i~~~~~~~---------d~l~~~~~--------- 183 (324)
++++||+||++|+++.++.++ |..+.+.. +||||+|+.+++ +.... ++|+++.+
T Consensus 263 ~~~~~~l~~aDlvl~iG~~~~~~~~~-~~~~~~~~~~i~id~d~~~~~-~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~ 340 (589)
T 2pgn_A 263 KSANDMMAAADFVLVLGSRLSDWGIA-QGYITKMPKFVHVDTDPAVLG-TFYFPLLSVVADAKTFMEQLIEVLPGTSGFK 340 (589)
T ss_dssp HHHHHHHHHCSEEEEESCCCCTTTTT-TTTTCCCCSEEEEESCGGGTT-SSSCCSEEEECCHHHHHHHHHHHGGGSTTCC
T ss_pred HHHHHHHhhCCEEEEECCCccccccc-ccccCCCCeEEEEeCCHHHHC-CCcCCCEEEEeCHHHHHHHHHHHhhhccccc
Confidence 467899999999999988887 76554444 999999999988 32221 23332211
Q ss_pred --------hhh--h---c-------cCC--CCCCC----------CCCCCC-------------------------CE--
Q 038651 184 --------SYH--R---I-------YVP--HGIPL----------KSNAHE-------------------------PL-- 204 (324)
Q Consensus 184 --------~~~--~---~-------~~~--~~~~~----------~~~~~~-------------------------~l-- 204 (324)
.|. . . ... ..... ...+.+ .+
T Consensus 341 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~l~~~~iv~~d~g~~~~~~~~~~~~~~~~~~~~~ 420 (589)
T 2pgn_A 341 AVRYQERENFRQATEFRAAWDGWVREQESGDGMPASMFRAMAEVRKVQRPEDIIVTDIGNHTLPMFGGAILQRPRRLVTS 420 (589)
T ss_dssp CCCGGGSTTHHHHHHHHHHHHHHHHHHTCCCCSSCCHHHHHHHHHHTCCTTCEEEECSSTTHHHHHHHCCCSSTTCEESC
T ss_pred ccccccchhhccHHHHHHHHHHHHhhhccCCCCCcCHHHHHHHHHHhCCCCCEEEEcCchHHHHHHHhcccCCCCcEECC
Confidence 121 0 0 000 00000 000000 00
Q ss_pred -----------------EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhh----CCCC-CC
Q 038651 205 -----------------MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIH----DGPY-NV 262 (324)
Q Consensus 205 -----------------~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~----~~~~-~~ 262 (324)
+..++..|++.+||++|.+. +|||+|+++|++|+++||+||++|++++..+ ...| ++
T Consensus 421 ~g~g~mG~~l~~AiGaala~~~~~vv~i~GDG~~~~~-~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~~~~~~~~~~~~~ 499 (589)
T 2pgn_A 421 MAEGILGCGFPMALGAQLAEPNSRVFLGTGDGALYYH-FNEFRVAVEHKLPVITMVFTNESYGANWTLMNHQFGQNNWTE 499 (589)
T ss_dssp TTTCCTTCHHHHHHHHHHHCTTSCEEEEEEHHHHHHH-GGGHHHHHHTTCCCEEEEEECSBCHHHHHHHHHHHSSCCSCB
T ss_pred CCcchhhhHHHHHHHHHHhCCCCcEEEEEeeHHHHhh-HHHHHHHHHhCCCeEEEEEECCCcccchHHHHhhcCCCcccc
Confidence 33567788888899998886 5999999999999999999999999998765 3333 66
Q ss_pred CCCCCHHHHHHHHHH-------------HHHHhHHhCCCCeEEEEEEecCCCCc
Q 038651 263 IENWNYTGLVEAFQN-------------AIETAAVEKKDCLCFIEAIVHKDDTG 303 (324)
Q Consensus 263 l~~~df~~lA~a~G~-------------al~~a~~~~~~~p~lIeV~id~~~~~ 303 (324)
+.++||.++|++||+ +|++++ +.++|+||||++++.+..
T Consensus 500 ~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~--~~~gp~liev~~~~~~~~ 551 (589)
T 2pgn_A 500 FMNPDWVGIAKAFGAYGESVRETGDIAGALQRAI--DSGKPALIEIPVSKTQGL 551 (589)
T ss_dssp CCCCCHHHHHHHHTCEEEECTTTCCHHHHHHHHH--HHCSCEEEEEECCSSSST
T ss_pred CCCCCHHHHHHHCCCeEEEECCHHHHHHHHHHHH--hCCCCEEEEEEecCCCCc
Confidence 778999999999998 777775 578999999999987643
No 17
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=100.00 E-value=8.3e-51 Score=414.33 Aligned_cols=307 Identities=14% Similarity=0.062 Sum_probs=234.5
Q ss_pred CcCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh-
Q 038651 7 SSSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA- 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~- 83 (324)
..+||+ +++|+|+|.++++|++|.+|||++|+||||||||+|| +|||++|+|||++|++|||++||.|++|||+||+
T Consensus 50 Fg~PG~~~~~l~dal~~~~~i~~i~~~hE~~Aa~aA~GyAr~tgkpgv~~~TsGpG~~N~~~gia~A~~~~vPlv~ItG~ 129 (604)
T 2x7j_A 50 VVCPGSRSTPLAVLCAAHPDISVHVQIDERSAGFFALGLAKAKQRPVLLICTSGTAAANFYPAVVEAHYSRVPIIVLTAD 129 (604)
T ss_dssp EECCCSTTHHHHHHHHHCTTCEEEECSSHHHHHHHHHHHHHHHTSCEEEEECSSHHHHTTHHHHHHHHHHTCCEEEEEEE
T ss_pred EECcCcccHHHHHHHHhCCCceEEEecChHHHHHHHHHHHHhhCCCEEEEECChhHHHHHHHHHHHHhhcCCCEEEEeCC
Confidence 368999 9999999987668999999999999999999999999 9999999999999999999999999999999952
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 130 ~~~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~d~~~~~~~~~~~ 209 (604)
T 2x7j_A 130 RPHELREVGAPQAINQHFLFGNFVKFFTDSALPEESPQMLRYIRTLASRAAGEAQKRPMGPVHVNVPLREPLMPDLSDEP 209 (604)
T ss_dssp CCGGGSSSCCTTCCCCTTTTGGGSSCEEECCCCCCSHHHHHHHHHHHHHHHHHHHSSSCCEEEEEEECCSCCCCCTTSCT
T ss_pred CCHHHhCCCCCCcCcHHHHhhhheeeeeecCCCcccchhHHHHHHHHHHHHHHhhCCCCCcEEEEcccCccCCCcccccc
Confidence
Q ss_pred ------------------------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc------
Q 038651 84 ------------------------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM------ 127 (324)
Q Consensus 84 ------------------------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~------ 127 (324)
|++||||+|++|+|+ ++++.+++++|||++|+||++|+++|+.
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~~A~rPvIl~G~g~-~~~a~~~l~~lae~~~~PV~~t~~~~~~~~~~~~ 288 (604)
T 2x7j_A 210 FGRMRTGRHVSVKTGTQSVDRESLSDVAEMLAEAEKGMIVCGELH-SDADKENIIALSKALQYPILADPLSNLRNGVHDK 288 (604)
T ss_dssp TCCSSSSCSSEEECCEEECCTGGGHHHHHHHHHCSSEEEEECCCC-CHHHHHHHHHHHHHHTCCEEECGGGTTTBSSSCC
T ss_pred cccccccccccccccCccCChhhHHHHHHHHhhcCCeEEEECCCC-cHHHHHHHHHHHHhcCceEEEcccccccccCCCC
Confidence 234789999999999 6688899999999999999999987654
Q ss_pred ------------------cccCCcEEEEEcCccCCcccccccccCCC-CEEEEcCCccccccCCChh---------hHHH
Q 038651 128 ------------------IVEFADAYIFVESIFNDYSSVGYSLLLNK-KAILMQPDRIVVANGLLLP---------NRNT 179 (324)
Q Consensus 128 ------------------~l~~aDlvl~lG~~~~~~~t~~~~~~~~~-~iI~id~d~~~i~~~~~~~---------d~l~ 179 (324)
+++ +|+||++|+++.+..+..|....+. ++||||+|+.+++ +.... ++|+
T Consensus 289 p~~~g~~~~~~~~~~~~~~~~-~Dlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~-~~~~~~~~i~~d~~~~l~ 366 (604)
T 2x7j_A 289 STVIDAYDSFLKDDELKRKLR-PDVVIRFGPMPVSKPVFLWLKDDPTIQQIVIDEDGGWRD-PTQASAHMIHCNASVFAE 366 (604)
T ss_dssp TTEECCHHHHTTSHHHHHHHC-CSEEEEESSCCSCHHHHHHHHHCTTSEEEEECTTCCCCC-TTSCCSEEECSCHHHHHH
T ss_pred cceechHHHHhcCchhhhhcC-CCEEEEECCcCccHHHHHHHhhCCCCeEEEECCCCCccC-CCccceEEEEcCHHHHHH
Confidence 234 8999999999987765545432323 3999999999987 22111 2333
Q ss_pred HHHH---------hhh-------hc-------cCC-CCCC-----------C---------------------CCC--CC
Q 038651 180 SAYE---------SYH-------RI-------YVP-HGIP-----------L---------------------KSN--AH 201 (324)
Q Consensus 180 ~~~~---------~~~-------~~-------~~~-~~~~-----------~---------------------~~~--~~ 201 (324)
++.+ .|. +. ... .... . ... +.
T Consensus 367 ~L~~~l~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~lp~d~iv~~d~g~~~~~~~~~~~~~~~~~ 446 (604)
T 2x7j_A 367 EIMAGLTAATRSSEWLEKWQFVNGRFREHLQTISSEDVSFEGNLYRILQHLVPENSSLFVGNSMPIRDVDTFFEKQDRPF 446 (604)
T ss_dssp HHHHTSCSSCCCCHHHHHHHHHHHHHHHHHHTSCCCCTTSHHHHHHHHHHHSCTTCEEEECTTHHHHHHHHHCCCBSCCC
T ss_pred HHHHhhcCCCCcHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHhcccCCCCc
Confidence 2211 111 00 000 0000 0 000 11
Q ss_pred CC--------E----------EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhh-------
Q 038651 202 EP--------L----------MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIH------- 256 (324)
Q Consensus 202 ~~--------l----------~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~------- 256 (324)
.. + .+.++..|++.+||++|.+. +|||+|+++|++|++|||+||++|++.+..+
T Consensus 447 ~~~~~~G~~~ig~~l~~AiGaala~~~~vv~i~GDGsf~~~-~~eL~ta~~~~lp~~ivv~NN~~~~i~~~~~~~q~~~~ 525 (604)
T 2x7j_A 447 RIYSNRGANGIDGVVSSAMGVCEGTKAPVTLVIGDLSFYHD-LNGLLAAKKLGIPLTVILVNNDGGGIFSFLPQASEKTH 525 (604)
T ss_dssp EEECCTTTCCSSSHHHHHHHHHHHHTSCEEEEEEHHHHHHT-GGGGHHHHHHCCCEEEEEEECSSCGGGGGSGGGSCHHH
T ss_pred eEEeCCCcCCcCcHHHHHHHHHhcCCCcEEEEEccHHHHhH-HHHHHHhhhcCCCeEEEEEeCCCCcccccCCCCccchh
Confidence 10 1 22357788889999999887 5999999999999999999999999976432
Q ss_pred -CCCCCCCCCCCHHHHHHHHHH---------HHHHhHH--hCCCCeEEEEEEecCCCCcHHHHHHHHHhhhhc
Q 038651 257 -DGPYNVIENWNYTGLVEAFQN---------AIETAAV--EKKDCLCFIEAIVHKDDTGKELLKWGSRVSAAN 317 (324)
Q Consensus 257 -~~~~~~l~~~df~~lA~a~G~---------al~~a~~--~~~~~p~lIeV~id~~~~~~~~~~~~~~~~~~~ 317 (324)
+..+....++||.++|++||+ .|++++. .+.++|+||||++++++.++.+.++.+.+++.+
T Consensus 526 ~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~~~~gp~liev~~~~~~~~~~~~~~~~~~~~~~ 598 (604)
T 2x7j_A 526 FEDLFGTPTGLDFKHAAALYGGTYSCPASWDEFKTAYAPQADKPGLHLIEIKTDRQSRVQLHRDMLNEAVREV 598 (604)
T ss_dssp HHHHTTCCCCCCTHHHHHHTTCEEECCSSHHHHHHHCCCCCSSCCEEEEEEECCHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhccCCCCCCHHHHHHHcCCeEEecCCHHHHHHHHHHHHhCCCCEEEEEECCccccHHHHHHHHHHHHHHH
Confidence 111234567999999999998 4544431 256899999999999999999999988776553
No 18
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=100.00 E-value=1.9e-50 Score=412.43 Aligned_cols=292 Identities=16% Similarity=0.190 Sum_probs=229.0
Q ss_pred CcCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhc-C-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh
Q 038651 7 SSSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARAR-A-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~t-g-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~ 83 (324)
..+||+ +++|+|+|.++++|++|.+|||++|+||||||||+| | +|||++|+|||++|+++||++||.|++|||+||+
T Consensus 46 fg~PG~~~~~l~~al~~~~~i~~i~~~~E~~Aa~~A~GyAr~tgg~~~v~~~TsGpG~~N~~~~l~~A~~~~vPlvvItg 125 (616)
T 2pan_A 46 FGVPGAAINPFYSAMRKHGGIRHILARHVEGASHMAEGYTRATAGNIGVCLGTSGPAGTDMITALYSASADSIPILCITG 125 (616)
T ss_dssp EECCCGGGHHHHHHHHHHCCCEEEECSSHHHHHHHHHHHHHHSTTCCEEEEECSTHHHHTSHHHHHHHHHTTCCEEEEEE
T ss_pred EECCCCccHHHHHHHHhcCCCcEEeeCCHHHHHHHHHHHHHhcCCCceEEEeCCCchHHHHHHHHHHHHhcCCCEEEEec
Confidence 368999 999999998756799999999999999999999998 7 8999999999999999999999999999999952
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 126 ~~p~~~~~~~~~Q~~d~~~~~~~~tk~~~~v~~~~~i~~~l~~A~~~A~~~r~GPV~l~iP~d~~~~~~~~~~~~~~~~~ 205 (616)
T 2pan_A 126 QAPRARLHKEDFQAVDIEAIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGRPGPVLVDLPFDVQVAEIEFDPDMYEPLP 205 (616)
T ss_dssp ECCGGGTTTTCTTCCCHHHHHGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSCCCEEEEEEHHHHHSEEECCGGGCCCCC
T ss_pred CCcccccCcccccccCHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHhcCCCceEEEEcchhhhhcccccccccccccc
Confidence
Q ss_pred -----------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc-------------------
Q 038651 84 -----------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM------------------- 127 (324)
Q Consensus 84 -----------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~------------------- 127 (324)
|++||||+|++|+|+.++++.+++++|+|++|+||++|++|||.
T Consensus 206 ~~~~~~~~~~i~~~~~~l~~a~rpvil~G~g~~~~~a~~~l~~lae~~~~PV~~t~~~~g~~~~~hp~~~G~~g~~~~~~ 285 (616)
T 2pan_A 206 VYKPAASRMQIEKAVEMLIQAERPVIVAGGGVINADAAALLQQFAELTSVPVIPTLMGWGCIPDDHELMAGMVGLQTAHR 285 (616)
T ss_dssp CCCCCCCHHHHHHHHHHHHTCSSEEEEECHHHHHTTCHHHHHHHHHHHTCCEEECTTTTTSSCTTSTTBCCCCSSSSCCH
T ss_pred cCCCCCCHHHHHHHHHHHHcCCCeEEEECCCcCcccHHHHHHHHHHHhCCCEEEccccCccCCCCCccccCCccccCCHH
Confidence 67799999999999988899999999999999999999999987
Q ss_pred ----cccCCcEEEEEcCccCCcccccccccCCCC-EEEEcCCccccccCCChh------h---HHHHHHH----------
Q 038651 128 ----IVEFADAYIFVESIFNDYSSVGYSLLLNKK-AILMQPDRIVVANGLLLP------N---RNTSAYE---------- 183 (324)
Q Consensus 128 ----~l~~aDlvl~lG~~~~~~~t~~~~~~~~~~-iI~id~d~~~i~~~~~~~------d---~l~~~~~---------- 183 (324)
++++||+||++|++++++.++.+..+.+.. +||||+|+.+++ +.... | +|+++.+
T Consensus 286 ~~~~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~-~~~~~~~~i~~D~~~~l~~L~~~l~~~~~~~~ 364 (616)
T 2pan_A 286 YGNATLLASDMVFGIGNRFANRHTGSVEKYTEGRKIVHIDIEPTQIG-RVLCPDLGIVSDAKAALTLLVEVAQEMQKAGR 364 (616)
T ss_dssp HHHHHHHHCSEEEEESCCCCHHHHSSHHHHHTTCEEEEEESCGGGTT-SSSCCSSCEECCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCEEEEECCCCcccccCcccccCCCCeEEEEeCCHHHhC-CCCCCCeEEEcCHHHHHHHHHHHhhhcccccc
Confidence 256899999999999877666554443444 999999999998 32221 2 3332211
Q ss_pred ----hh-------hhccC---CC--CCCC----------CCCCCC-------------------------CE--------
Q 038651 184 ----SY-------HRIYV---PH--GIPL----------KSNAHE-------------------------PL-------- 204 (324)
Q Consensus 184 ----~~-------~~~~~---~~--~~~~----------~~~~~~-------------------------~l-------- 204 (324)
.| ++.+. .. ..+. ...+.+ .+
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~g~~G~~ 444 (616)
T 2pan_A 365 LPCRKEWVADCQQRKRTLLRKTHFDNVPVKPQRVYEEMNKAFGRDVCYVTTIGLSQIAAAQMLHVFKDRHWINCGQAGPL 444 (616)
T ss_dssp SCCCHHHHHHHHHHHTTSEECCCCCCSSBCHHHHHHHHHHHSCTTEEEEECSSHHHHHHHHHCCCCSTTSEEECTTTCCT
T ss_pred cccHHHHHHHHHHHHhhhhhccccCCCCcCHHHHHHHHHHhCCCCcEEEEcCcHHHHHHHHhcccCCCCeEEcCCCcccc
Confidence 01 00000 00 0000 000000 00
Q ss_pred -----------EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhhC----C-----CCCC--
Q 038651 205 -----------MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIHD----G-----PYNV-- 262 (324)
Q Consensus 205 -----------~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~----~-----~~~~-- 262 (324)
+..++..|++.+||++|.+. +|||+|++++++|+++||+||++|++++..+. . .|.+
T Consensus 445 G~~l~~AiGaala~~~~~vv~i~GDGs~~~~-~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (616)
T 2pan_A 445 GWTIPAALGVCAADPKRNVVAISGDFDFQFL-IEELAVGAQFNIPYIHVLVNNAYLGLIRQSQRAFDMDYCVQLAFENIN 523 (616)
T ss_dssp TCHHHHHHHHHHHCTTCEEEEEEEHHHHHHT-GGGHHHHHHTTCCCEEEEEECSBCHHHHHHGGGGTCCCSCBCCCCCTT
T ss_pred cchHHHHHHHHHhCCCCcEEEEEcchhhhCC-HHHHHHHHHhCCCeEEEEEECCcchHHHHHHHHhcCCccccccccccc
Confidence 33567788888888888876 59999999999999999999999999887652 2 3332
Q ss_pred CC-----CCCHHHHHHHHHH-------------HHHHhHHhC----CCCeEEEEEEecCCCC
Q 038651 263 IE-----NWNYTGLVEAFQN-------------AIETAAVEK----KDCLCFIEAIVHKDDT 302 (324)
Q Consensus 263 l~-----~~df~~lA~a~G~-------------al~~a~~~~----~~~p~lIeV~id~~~~ 302 (324)
+. .+||.++|++||+ +|++++ + .++|+||||++++.+.
T Consensus 524 ~~~~~~~~~d~~~~a~a~G~~~~~v~~~~el~~al~~a~--~~~~~~~gp~lIev~~~~~~~ 583 (616)
T 2pan_A 524 SSEVNGYGVDHVKVAEGLGCKAIRVFKPEDIAPAFEQAK--ALMAQYRVPVVVEVILERVTN 583 (616)
T ss_dssp CGGGTTCCCCHHHHHHHTTCEEEEECSGGGHHHHHHHHH--HHHHHHCSCEEEEEEBCSCCC
T ss_pred cccCCCCCCCHHHHHHHcCCeEEEECCHHHHHHHHHHHH--hhcccCCCcEEEEEEeccccc
Confidence 22 4899999999998 677664 4 6899999999998763
No 19
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=100.00 E-value=6.7e-50 Score=404.85 Aligned_cols=299 Identities=18% Similarity=0.194 Sum_probs=226.4
Q ss_pred CcCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh-
Q 038651 7 SSSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA- 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~- 83 (324)
..+||+ +++|+|++.++ +|++|.+|||++|+||||||||+|| +|||++|+|||++|+++||++||.|++|||+||+
T Consensus 29 fg~PG~~~~~l~~al~~~-~i~~i~~~~E~~Aa~~A~GyAr~tg~pgv~~~TsGpG~~N~~~~i~~A~~~~vPll~itg~ 107 (568)
T 2c31_A 29 YGVVGIPITNLARMWQDD-GQRFYSFRHEQHAGYAASIAGYIEGKPGVCLTVSAPGFLNGVTSLAHATTNCFPMILLSGS 107 (568)
T ss_dssp EECCCTTTHHHHHHHHHT-TCEEEECSSHHHHHHHHHHHHHHHSSCEEEEECSHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred EEeCCCccHHHHHHHHhC-CCcEEEeCcHHHHHHHHHHHHHHhCCCEEEEEcCCccHHHHHHHHHHHHhcCCCEEEEccC
Confidence 368999 99999999874 7999999999999999999999999 8999999999999999999999999999999952
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 108 ~~~~~~~~~~~~~Q~~dq~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv~~~~~~~~~~~~~~~ 187 (568)
T 2c31_A 108 SEREIVDLQQGDYEEMDQMNVARPHCKASFRINSIKDIPIGIARAVRTAVSGRPGGVYVDLPAKLFGQTISVEEANKLLF 187 (568)
T ss_dssp CCHHHHHTTCCCTTCCCHHHHSGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEETHHHHCEEEHHHHHHHCC
T ss_pred CCccccCCCCCcccccCHHHHHHhhhheeeecCCHHHHHHHHHHHHHHhcCCCCceEEEeCCHHHhhccccccccccccc
Confidence
Q ss_pred ----------------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc--------------
Q 038651 84 ----------------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM-------------- 127 (324)
Q Consensus 84 ----------------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~-------------- 127 (324)
|++||||+|++|+|+.++++.+++++|||++|+||++|++|||+
T Consensus 188 ~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~~g~~~~~~p~~~G~~~~ 267 (568)
T 2c31_A 188 KPIDPAPAQIPAEDAIARAADLIKNAKRPVIMLGKGAAYAQCDDEIRALVEETGIPFLPMGMAKGLLPDNHPQSAAATRA 267 (568)
T ss_dssp CCSCSSCCCCCCHHHHHHHHHHHHTCSSEEEEECHHHHHHTCHHHHHHHHHHHTCCEEECGGGTTSSCTTCTTBCGGGHH
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHhCCCCEEEECcccccccHHHHHHHHHHHhCCCEEecccccccCCCCChhhcchHHH
Confidence 67899999999999998899999999999999999999999998
Q ss_pred -cccCCcEEEEEcCccCCccccccc-ccC-CCC-EEEEcCCccccccCCChh---------hHHHHHHH----------h
Q 038651 128 -IVEFADAYIFVESIFNDYSSVGYS-LLL-NKK-AILMQPDRIVVANGLLLP---------NRNTSAYE----------S 184 (324)
Q Consensus 128 -~l~~aDlvl~lG~~~~~~~t~~~~-~~~-~~~-iI~id~d~~~i~~~~~~~---------d~l~~~~~----------~ 184 (324)
++++|||||++|++++++.+.++. .+. +.. +||||+|+.+++ +.... ++|+++.+ .
T Consensus 268 ~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~~ii~id~d~~~~~-~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~ 346 (568)
T 2c31_A 268 FALAQCDVCVLIGARLNWLMQHGKGKTWGDELKKYVQIDIQANEMD-SNQPIAAPVVGDIKSAVSLLRKALKGAPKADAE 346 (568)
T ss_dssp HHHHHCSEEEEESCCCSGGGGGGCSGGGTTSCCEEEEEESCGGGTT-SSSCCSEEEESCHHHHHHHHHHHHTTCCCCCHH
T ss_pred hhhccCCEEEEECCCCccccccCcccccCCCCCeEEEEeCCHHHhc-CCcCCCceeeCCHHHHHHHHHHhhhhcCCCcHH
Confidence 567999999999999876554332 232 344 999999999987 22211 23332211 1
Q ss_pred hhh-------c----c-----CCC-CCCC----------CCC--CCCC-------------------------E------
Q 038651 185 YHR-------I----Y-----VPH-GIPL----------KSN--AHEP-------------------------L------ 204 (324)
Q Consensus 185 ~~~-------~----~-----~~~-~~~~----------~~~--~~~~-------------------------l------ 204 (324)
|.. . . ... ..+. ... +.+. +
T Consensus 347 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~iv~~dg~~~~~~~~~~~~~~~p~~~~~~g~~g 426 (568)
T 2c31_A 347 WTGALKAKVDGNKAKLAGKMTAETPSGMMNYSNSLGVVRDFMLANPDISLVNEGANALDNTRMIVDMLKPRKRLDSGTWG 426 (568)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCCTTCBCHHHHHHHHHHHHHHCCSSEEEEESSHHHHHHHHHCCCCSTTCEEESTTTT
T ss_pred HHHHHHHHHHhhhhhhhhhhcccccCCCcCHHHHHHHHHHHhcCCCCeEEEECChhHHHHHHHHhcccCCCeEEcCCCCc
Confidence 100 0 0 000 0000 000 1100 0
Q ss_pred ------------EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCch-hhhhhh-hCCC--CCCCCCCCH
Q 038651 205 ------------MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNY-TIEVEI-HDGP--YNVIENWNY 268 (324)
Q Consensus 205 ------------~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~y-g~~~~~-~~~~--~~~l~~~df 268 (324)
.+.++..|++.+||++|.+. .|||+|++||++|++|||+||++| .+.+.. +... ..+++++||
T Consensus 427 ~~G~~l~~AiGaala~~~~vv~i~GDGsf~~~-~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~d~ 505 (568)
T 2c31_A 427 VMGIGMGYCVAAAAVTGKPVIAVEGDSAFGFS-GMELETICRYNLPVTVIIMNNGGIYKGNEADPQPGVISCTRLTRGRY 505 (568)
T ss_dssp CSSCHHHHHHHHHHHHCSCEEEEEEHHHHHTT-GGGHHHHHHTTCCEEEEEEESSBSSCSCCCCSBTTBCCTTBCCCCCH
T ss_pred cccccHHHHHHHHhCCCCcEEEEEcchHhhcc-HHHHHHHHHhCCCeEEEEEeCchhHHHHHHHhhcCCcccCcCCCCCH
Confidence 11267788888899999886 499999999999999999999995 443221 1111 122678999
Q ss_pred HHHHHHHHH-------------HHHHhHHhCCCCeEEEEEEecCCCCcHHHHHHH
Q 038651 269 TGLVEAFQN-------------AIETAAVEKKDCLCFIEAIVHKDDTGKELLKWG 310 (324)
Q Consensus 269 ~~lA~a~G~-------------al~~a~~~~~~~p~lIeV~id~~~~~~~~~~~~ 310 (324)
.++|++||+ +|++++ +.++|+||||++++++.++....+.
T Consensus 506 ~~~a~a~G~~~~~v~~~~el~~al~~a~--~~~~p~liev~~~~~~~~~~~~~~~ 558 (568)
T 2c31_A 506 DMMMEAFGGKGYVANTPAELKAALEEAV--ASGKPCLINAMIDPDAGVESGRIKS 558 (568)
T ss_dssp HHHHHTTTCEEEEESSHHHHHHHHHHHH--HHTSCEEEEEEBCTTSSCC------
T ss_pred HHHHHHcCCeEEEeCCHHHHHHHHHHHH--hCCCCEEEEEEeccccCCCcccccc
Confidence 999999998 666664 5789999999999998877654443
No 20
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=100.00 E-value=7.2e-50 Score=404.21 Aligned_cols=294 Identities=22% Similarity=0.258 Sum_probs=225.4
Q ss_pred CcCCCC-chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh-
Q 038651 7 SSSPAD-SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA- 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~- 83 (324)
..+||+ +++|+|++.+ .+|++|.+|||++|+||||||||+|| +|||++|+|||++|+++||++||.|++|||+||+
T Consensus 27 fg~PG~~~~~l~~al~~-~~i~~i~~~hE~~Aa~~A~Gyar~tg~pgv~~~TsGpG~~N~~~gi~~A~~~~vPll~itg~ 105 (564)
T 2q28_A 27 YGVVGIPVTDMARHAQA-EGIRYIGFRHEQSAGYAAAASGFLTQKPGICLTVSAPGFLNGLTALANATVNGFPMIMISGS 105 (564)
T ss_dssp EECCCTTTHHHHHHHHH-TTCEEEECSSHHHHHHHHHHHHHHHSSCEEEEECSHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred EECCCcchHHHHHHHHh-CCCcEEeeCCHHHHHHHHHHHHHHhCCCEEEEEccCchHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 368999 9999999987 47999999999999999999999999 9999999999999999999999999999999952
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 106 ~~~~~~~~~~~~~Q~~dq~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv~~~~~~~~~~~~~~~ 185 (564)
T 2q28_A 106 SDRAIVDLQQGDYEELDQMNAAKPYAKAAFRVNQPQDLGIALARAIRVSVSGRPGGVYLDLPANVLAATMEKDEALTTIV 185 (564)
T ss_dssp CCHHHHHTTSCCTTCCCHHHHHGGGSSEEEECCSGGGHHHHHHHHHHHHHSSSCCEEEEEEEHHHHHCEEEHHHHHHTCC
T ss_pred CCccccCCCCCccccccHHHHHHHhhheeeecCCHHHHHHHHHHHHHHHhcCCCceEEEEcCHHHhhccccccccccccc
Confidence
Q ss_pred ----------------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc--------------
Q 038651 84 ----------------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM-------------- 127 (324)
Q Consensus 84 ----------------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~-------------- 127 (324)
|++||||+|++|+|+.++++.+++++|||++|+||++|++|||+
T Consensus 186 ~~~~~~~~~~~~~~~i~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~~g~~~~~hp~~~G~~~~ 265 (564)
T 2q28_A 186 KVENPSPALLPCPKSVTSAISLLAKAERPLIILGKGAAYSQADEQLREFIESAQIPFLPMSMAKGILEDTHPLSAAAARS 265 (564)
T ss_dssp CCSCSSCCEEECHHHHHHHHHHHHHCSSEEEEECHHHHHHTCHHHHHHHHHHHTCCEEECGGGTTSSCTTCTTBCGGGHH
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHcCCCcEEEECcccccccHHHHHHHHHHHhCCCEEeccCccccCCCCChhhcChHHH
Confidence 67799999999999988899999999999999999999999998
Q ss_pred -cccCCcEEEEEcCccCCcccccccccCCCC-EEEEcCCccccccCCChh---------hHHHHHHH-----------hh
Q 038651 128 -IVEFADAYIFVESIFNDYSSVGYSLLLNKK-AILMQPDRIVVANGLLLP---------NRNTSAYE-----------SY 185 (324)
Q Consensus 128 -~l~~aDlvl~lG~~~~~~~t~~~~~~~~~~-iI~id~d~~~i~~~~~~~---------d~l~~~~~-----------~~ 185 (324)
++++|||||++|++++++.+.++..+.+.. +||||+|+.+++ +.... ++|+++.+ .|
T Consensus 266 ~~l~~aDlvl~iG~~~~~~~~~~~~~~~~~~~~i~id~d~~~~~-~~~~~~~~i~~d~~~~l~~L~~~l~~~~~~~~~~w 344 (564)
T 2q28_A 266 FALANADVVMLVGARLNWLLAHGKKGWAADTQFIQLDIEPQEID-SNRPIAVPVVGDIASSMQGMLAELKQNTFTTPLVW 344 (564)
T ss_dssp HHHHHCSEEEEESCCCSGGGGGGTTTSCTTCEEEEEESCGGGTT-SSSCCSEEEESCHHHHHHHHHHHHHHSCCCCCHHH
T ss_pred hHhhcCCEEEEECCcccccccccccccCCCCeEEEEeCCHHHhc-CCCCCCeEEEcCHHHHHHHHHHHhhhcCcCCcHHH
Confidence 567999999999999765443332233344 999999999987 22211 23322210 11
Q ss_pred h-------hc---------cC--------------------CCCCCC----------------CCCCCCCE---------
Q 038651 186 H-------RI---------YV--------------------PHGIPL----------------KSNAHEPL--------- 204 (324)
Q Consensus 186 ~-------~~---------~~--------------------~~~~~~----------------~~~~~~~l--------- 204 (324)
. +. .. +..... ...+...+
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~ivv~dg~~~~~~~~~~~~~~~p~~~~~~g~~g~~G 424 (564)
T 2q28_A 345 RDILNIHKQQNAQKMHEKLSTDTQPLNYFNALSAVRDVLRENQDIYLVNEGANTLDNARNIIDMYKPRRRLDCGTWGVMG 424 (564)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCSSBCHHHHHHHHHHHHTTCTTCEEEEESSHHHHHHHHHSCCCSSSCEEESTTTTCTT
T ss_pred HHHHHHHHHhhhhhhhhhhccCCCCcCHHHHHHHHHHHhcCCCCEEEEECCchHHHHHHHHhcccCCCeEecCCCCCccc
Confidence 0 00 00 000000 00000000
Q ss_pred ---------EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCch-hhhhhh-h-CCCC--C-CCCCCCHH
Q 038651 205 ---------MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNY-TIEVEI-H-DGPY--N-VIENWNYT 269 (324)
Q Consensus 205 ---------~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~y-g~~~~~-~-~~~~--~-~l~~~df~ 269 (324)
.+.++..|++.+||++|.+. .|||+|++||++|+++||+||++| ++.+.. + ...+ . ..+.+||.
T Consensus 425 ~~l~~AiGaa~a~~~~vv~i~GDGsf~~~-~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 503 (564)
T 2q28_A 425 IGMGYAIGASVTSGSPVVAIEGDSAFGFS-GMEIETICRYNLPVTIVIFNNGGIYRGDGVDLSGAGAPSPTDLLHHARYD 503 (564)
T ss_dssp CHHHHHHHHHHHHCSCEEEEEEHHHHHTT-GGGHHHHHHTTCCEEEEEEECSBSSCSCCCCTTSSCCCCTTBCCTTCCGG
T ss_pred chHHHHHHHhhcCCCcEEEEEcchHhhcc-HHHHHHHHHhCCCeEEEEEeCchhHHHHHHHHhccCCccccccCCCCCHH
Confidence 12267788888999999886 499999999999999999999995 654321 1 1211 1 23469999
Q ss_pred HHHHHHHH-------------HHHHhHHhCCCCeEEEEEEecCCCCcHH
Q 038651 270 GLVEAFQN-------------AIETAAVEKKDCLCFIEAIVHKDDTGKE 305 (324)
Q Consensus 270 ~lA~a~G~-------------al~~a~~~~~~~p~lIeV~id~~~~~~~ 305 (324)
++|++||+ +|++++ +.++|+||||.+++++.++.
T Consensus 504 ~~a~a~G~~~~~v~~~~el~~al~~a~--~~~~p~liev~~~~~~~~~~ 550 (564)
T 2q28_A 504 KLMDAFRGVGYNVTTTDELRHALTTGI--QSRKPTIINVVIDPAAGTES 550 (564)
T ss_dssp GGGGGGTCEEEEECSHHHHHHHHHHHH--HHTSCEEEEEEBCTTSSCCC
T ss_pred HHHHHcCCeEEEeCCHHHHHHHHHHHH--hCCCCEEEEEEeccccCCCc
Confidence 99999998 666664 57899999999999876643
No 21
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=100.00 E-value=3.6e-49 Score=401.33 Aligned_cols=286 Identities=17% Similarity=0.142 Sum_probs=225.2
Q ss_pred CcCCCC-chHHHHhhhcC-CCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh
Q 038651 7 SSSPAD-SSSLLDHLIAE-PGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA 83 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~~-~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~ 83 (324)
..+||+ +++|+|+|.++ ++|++|.+|||++|+||||||||+|| +|||++|+|||++|++|||++||.|++|||+||+
T Consensus 23 fg~PG~~~~~l~~al~~~~~~i~~i~~~~E~~Aa~~A~GyAr~tgk~~v~~~tsGpG~~N~~~gl~~A~~~~vPll~Itg 102 (590)
T 1v5e_A 23 YGIPSGTLSSLMDAMGEEENNVKFLQVKHEEVGAMAAVMQSKFGGNLGVTVGSGGPGASHLINGLYDAAMDNIPVVAILG 102 (590)
T ss_dssp EECCCTTTHHHHTTSSSTTCCCEEEECSSHHHHHHHHHHHHHTTCCCCEEEECTTHHHHTTHHHHHHHHHHTCCEEEEEE
T ss_pred EEecCCchHHHHHHHHhcCCCCeEEeeCCHHHHHHHHHHHHHHHCCCEEEEeCcChHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 468999 99999999875 57999999999999999999999999 9999999999999999999999999999999952
Q ss_pred -----------------------------------------------------------------------h--------
Q 038651 84 -----------------------------------------------------------------------L-------- 84 (324)
Q Consensus 84 -----------------------------------------------------------------------L-------- 84 (324)
.
T Consensus 103 ~~p~~~~g~~~~Q~~d~~~~~~~~tk~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~liP~dv~~~~~~~~~~~~~~~~~ 182 (590)
T 1v5e_A 103 SRPQRELNMDAFQELNQNPMYDHIAVYNRRVAYAEQLPKLVDEAARMAIAKRGVAVLEVPGDFAKVEIDNDQWYSSANSL 182 (590)
T ss_dssp ECCGGGTTTTCTTCCCCHHHHHTTCSEEEECCSGGGHHHHHHHHHHHHHHTTSEEEEEEETTGGGCEEEGGGCCCCGGGC
T ss_pred CCCcccCCCCcccccCHHHHHHhhccEEEEeCCHHHHHHHHHHHHHHHhcCCCceEEEEccchhhcccCccccccccccc
Confidence 1
Q ss_pred --------------------hcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc-----------------
Q 038651 85 --------------------LKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM----------------- 127 (324)
Q Consensus 85 --------------------~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~----------------- 127 (324)
++||||+|++|+|+ + ++.+++++|+|++++||++|++|||+
T Consensus 183 ~~~~~~~~~~~~i~~~~~~l~~a~rpvil~G~g~-~-~a~~~l~~lae~~~~Pv~~t~~g~g~~~~~~p~~~G~~g~~g~ 260 (590)
T 1v5e_A 183 RKYAPIAPAAQDIDAAVELLNNSKRPVIYAGIGT-M-GHGPAVQELARKIKAPVITTGKNFETFEWDFEALTGSTYRVGW 260 (590)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHCSSEEEEECGGG-T-TCHHHHHHHHHHHTCCEEECTTCGGGSCTTCTTEEEESSSSSC
T ss_pred ccCCCCCCCHHHHHHHHHHHHhCCCeEEEEcCch-h-HHHHHHHHHHHHHCCCEEEccccCcCCCCCChhhCccCcccCC
Confidence 12689999999999 7 89999999999999999999999986
Q ss_pred -----cccCCcEEEEEcCccCCccc-ccccccCCCC-EEEEcCCccccccCCChh---------hHHHHHHH--------
Q 038651 128 -----IVEFADAYIFVESIFNDYSS-VGYSLLLNKK-AILMQPDRIVVANGLLLP---------NRNTSAYE-------- 183 (324)
Q Consensus 128 -----~l~~aDlvl~lG~~~~~~~t-~~~~~~~~~~-iI~id~d~~~i~~~~~~~---------d~l~~~~~-------- 183 (324)
++++||+||++|+++++... +.+ + +.. +||||+|+.+++ +.... ++++++.+
T Consensus 261 ~~~~~~l~~aDlvl~iG~~~~~~~~~~~~--~-~~~~~i~id~d~~~~~-~~~~~~~~i~gd~~~~l~~L~~~l~~~~~~ 336 (590)
T 1v5e_A 261 KPANETILEADTVLFAGSNFPFSEVEGTF--R-NVDNFIQIDIDPAMLG-KRHHADVAILGDAALAIDEILNKVDAVEES 336 (590)
T ss_dssp HHHHHHHHHCSEEEEESCCCTTTTTTTTT--T-TCSEEEEEESCGGGTT-SSSCCSEEEESCHHHHHHHHHHHSCCCCCC
T ss_pred HHHHHHHHhCCEEEEECCCCcchhccccC--C-CCCeEEEEeCCHHHHC-CCcCCCeEEEcCHHHHHHHHHHhhccCCcH
Confidence 46799999999999987652 111 2 334 999999999998 33221 23332211
Q ss_pred hhh-------hcc---------CCCC-CC---------------------------C-----C-CCCCC--------CE-
Q 038651 184 SYH-------RIY---------VPHG-IP---------------------------L-----K-SNAHE--------PL- 204 (324)
Q Consensus 184 ~~~-------~~~---------~~~~-~~---------------------------~-----~-~~~~~--------~l- 204 (324)
.|. ..+ .... .. + . ..+.. .+
T Consensus 337 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ivv~d~G~~~~~~~~~~~~~~~~~~~~~~~~g~mG 416 (590)
T 1v5e_A 337 AWWTANLKNIANWREYINMLETKEEGDLQFYQVYNAINNHADEDAIYSIDVGNSTQTSIRHLHMTPKNMWRTSPLFATMG 416 (590)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCSSBCCHHHHHHHHHHHSCTTCEEEECSSHHHHGGGGTCCCCTTSEEECCCSSCCTT
T ss_pred HHHHHHHHHHHHhHhhhhhcccCCCCCcCHHHHHHHHHhhCCCCCEEEECCchHHHHHHHhcccCCCCeEEcCCCCCccc
Confidence 110 000 0000 00 0 0 00000 00
Q ss_pred ----------EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhhCCC-C----CCCCCCCHH
Q 038651 205 ----------MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIHDGP-Y----NVIENWNYT 269 (324)
Q Consensus 205 ----------~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~~~-~----~~l~~~df~ 269 (324)
+..|+..|++.+||++|.+. +|||+|+++|++|+++||+||++|++++..|... | .++.++||.
T Consensus 417 ~~l~~AiGaala~~~~~vv~i~GDG~~~~~-~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~q~~~~~~~~~~~~~~~d~~ 495 (590)
T 1v5e_A 417 IAIPGGLGAKNTYPDRQVWNIIGDGAFSMT-YPDVVTNVRYNMPVINVVFSNTEYAFIKNKYEDTNKNLFGVDFTDVDYA 495 (590)
T ss_dssp CHHHHHHHHHHHCTTSCEEEEEEHHHHHHH-GGGHHHHHHTTCCCEEEEEECSSCTTGGGTTSSSCCSCCCCCCCCCCHH
T ss_pred ChHHHHHHHHHhCCCCeEEEEEechHHhch-HHHHHHHHHhCCCCEEEEEECCchHHHHHHHHHhcCCCccccCCCCCHH
Confidence 34577888999999999887 5999999999999999999999999998766332 3 336679999
Q ss_pred HHHHHHHH-------------HHHHhHHhCC---CCeEEEEEEecCCC
Q 038651 270 GLVEAFQN-------------AIETAAVEKK---DCLCFIEAIVHKDD 301 (324)
Q Consensus 270 ~lA~a~G~-------------al~~a~~~~~---~~p~lIeV~id~~~ 301 (324)
++|++||+ +|++++ +. ++|+||||++++++
T Consensus 496 ~~a~a~G~~~~~v~~~~el~~al~~a~--~~~~~~gp~liev~~~~~~ 541 (590)
T 1v5e_A 496 KIAEAQGAKGFTVSRIEDMDRVMAEAV--AANKAGHTVVIDCKITQDR 541 (590)
T ss_dssp HHHHHTTSEEEEECBHHHHHHHHHHHH--HHHHTTCCEEEEEECCSCC
T ss_pred HHHHHcCCEEEEECCHHHHHHHHHHHH--HhcCCCCCEEEEEEecccc
Confidence 99999998 666664 44 89999999999988
No 22
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=100.00 E-value=2.6e-48 Score=393.63 Aligned_cols=288 Identities=20% Similarity=0.157 Sum_probs=224.7
Q ss_pred cCCCC--chHHHHhhhcCCCCeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh-
Q 038651 8 SSPAD--SSSLLDHLIAEPGSRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA- 83 (324)
Q Consensus 8 ~~pG~--~~~l~dal~~~~~i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~- 83 (324)
.+||+ +++|+|+|. + |++|.+|||++|+||||||||+|| +|||++|+|||++|+++||++||.|++|||+||+
T Consensus 32 g~PG~~~~~~l~~al~--~-i~~i~~~~E~~Aa~~A~Gyar~tg~p~v~~~TsGpG~~N~~~~v~~A~~~~~Pll~itg~ 108 (573)
T 2iht_A 32 GVVGREAASILFDEVE--G-IDFVLTRHEFTAGVAADVLARITGRPQACWATLGPGMTNLSTGIATSVLDRSPVIALAAQ 108 (573)
T ss_dssp ECCCGGGGTCCSCSST--T-CEEEECSSHHHHHHHHHHHHHHHCSCEEEEECTTHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred EecCCcchhHHHHHHc--C-CeEEeeCCHHHHHHHHHHHHHHHCCCEEEEEccCchHHHHHHHHHHHHhhCCCEEEEccc
Confidence 57898 689999997 4 999999999999999999999999 9999999999999999999999999999999952
Q ss_pred --------------------------------------------------------------------------------
Q 038651 84 -------------------------------------------------------------------------------- 83 (324)
Q Consensus 84 -------------------------------------------------------------------------------- 83 (324)
T Consensus 109 ~~~~~~~~~~~~Q~~d~~~~~~~~~k~~~~v~~~~~~~~~i~~A~~~A~~~~~GPV~l~iP~dv~~~~~~~~~~~~~~~~ 188 (573)
T 2iht_A 109 SESHDIFPNDTHQCLDSVAIVAPMSKYAVELQRPHEITDLVDSAVNAAMTEPVGPSFISLPVDLLGSSEGIDTTVPNPPA 188 (573)
T ss_dssp SCGGGCCTTTSTTCCCHHHHHGGGSSEEEECCSGGGHHHHHHHHHHHHTBSSCCCEEEEEEHHHHTCCTTCC---CCCCC
T ss_pred CcccccCCcCccccCCHHHHHHhHhhEEEEcCCHHHHHHHHHHHHHHHhcCCCceEEEEecchHhhhhhcccccCCcccc
Confidence
Q ss_pred ------------------------hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc------------
Q 038651 84 ------------------------LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM------------ 127 (324)
Q Consensus 84 ------------------------L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~------------ 127 (324)
|++||||+|++|+|+.++++.+++++|+|++|+||++|++|||+
T Consensus 189 ~~~~~~~~~~~~~~~~~v~~~~~~l~~a~rpvIl~G~g~~~~~a~~~l~~lae~~~~Pv~~t~~~~g~~~~~hp~~~G~~ 268 (573)
T 2iht_A 189 NTPAKPVGVVADGWQKAADQAAALLAEAKHPVLVVGAAAIRSGAVPAIRALAERLNIPVITTYIAKGVLPVGHELNYGAV 268 (573)
T ss_dssp CCCSSCBEEECTTHHHHHHHHHHHHHHCSSEEEEECHHHHHTTCHHHHHHHHHHHTCCEEECSTTTTSSCTTCTTEEEEC
T ss_pred ccCCCCccccCCCCHHHHHHHHHHHHcCCCeEEEECCCccccCHHHHHHHHHHHHCCeEEEecccCccCCCCCcCccCcc
Confidence 23478999999999988899999999999999999999999986
Q ss_pred ---------------cccCCcEEEEEcCc-cCCcccccccccCCCC-EEEEcCCccccccCCChh---------hHHHHH
Q 038651 128 ---------------IVEFADAYIFVESI-FNDYSSVGYSLLLNKK-AILMQPDRIVVANGLLLP---------NRNTSA 181 (324)
Q Consensus 128 ---------------~l~~aDlvl~lG~~-~~~~~t~~~~~~~~~~-iI~id~d~~~i~~~~~~~---------d~l~~~ 181 (324)
++++||+||++|++ +.++.++.|. ..+.. +||||+|+.+++ +.... ++|+++
T Consensus 269 ~~~~~g~~~~~~~~~~l~~aDlvl~iG~~~~~~~~~~~~~-~~~~~~~i~id~d~~~~~-~~~~~~~~i~~d~~~~l~~L 346 (573)
T 2iht_A 269 TGYMDGILNFPALQTMFAPVDLVLTVGYDYAEDLRPSMWQ-KGIEKKTVRISPTVNPIP-RVYRPDVDVVTDVLAFVEHF 346 (573)
T ss_dssp CTTHHHHHTSCHHHHHHTTCCEEEEETCCGGGCCCHHHHC-CSSCCEEEEEESSCCSCT-TTCCCSEEEESCHHHHHHHH
T ss_pred ccccCCCCCCHHHHHHHhhCCEEEEECCCccccccccccC-CCCCCeEEEEeCCHHHhC-CCcCCCeeEeCCHHHHHHHH
Confidence 24689999999999 9888777665 21334 999999999988 32222 234433
Q ss_pred HHh--------hh------hcc-----CCCC--CCC----------CCCCC-----CC----------------------
Q 038651 182 YES--------YH------RIY-----VPHG--IPL----------KSNAH-----EP---------------------- 203 (324)
Q Consensus 182 ~~~--------~~------~~~-----~~~~--~~~----------~~~~~-----~~---------------------- 203 (324)
.+. |. +.+ .... ... +..+. +.
T Consensus 347 ~~~l~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~iv~~d~G~~~~~~~~~~~~~~~ 426 (573)
T 2iht_A 347 ETATASFGAKQRHDIEPLRARIAEFLADPETYEDGMRVHQVIDSMNTVMEEAAEPGEGTIVSDIGFFRHYGVLFARADQP 426 (573)
T ss_dssp HHHTTTCCCCCCCCCHHHHHHHHHHHTCCCCCSSSBCHHHHHHHHHHHHHHHSCTTCCEEEECSSHHHHHHHHHCCCCST
T ss_pred HHhccccCchhHHHHHHHHHHhhhhhhccccCcCCcCHHHHHHHHHHhcccccCCCCcEEEEcCcHhHHHHHHhcCcCCC
Confidence 211 10 000 0000 000 00000 00
Q ss_pred ---E-------------------EecCCCeEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhh-----
Q 038651 204 ---L-------------------MLSGNTAVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIH----- 256 (324)
Q Consensus 204 ---l-------------------~~~~~~~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~----- 256 (324)
+ ...++..|++.+||++|.+. +|||+|++++++|+++||+||++|++++..+
T Consensus 427 ~~~~~~~g~g~mG~~l~~AiGaa~a~~~~~vv~i~GDG~~~~~-~~~L~~a~~~~l~~~ivv~NN~~~~~~~~~~~~~~~ 505 (573)
T 2iht_A 427 FGFLTSAGCSSFGYGIPAAIGAQMARPDQPTFLIAGDGGFHSN-SSDLETIARLNLPIVTVVVNNDTNGLIELYQNIGHH 505 (573)
T ss_dssp TSEECCSSSCCTTCHHHHHHHHHHHSTTSCEEEEEEHHHHHHT-GGGHHHHHHHTCCCEEEEEECSBCHHHHHHHHHHHS
T ss_pred CeEEcCCCCcccccHHHHHHHHHHhCCCCcEEEEEccHHHHhH-HHHHHHHHHhCCCeEEEEEECCcchhhHHHHHHhcC
Confidence 0 23456677777778777775 4999999999999999999999999998754
Q ss_pred CCCC--CCCCCCCHHHHHHHHHH-------------HHHHhHHhCCCCeEEEEEEecCCCCcH
Q 038651 257 DGPY--NVIENWNYTGLVEAFQN-------------AIETAAVEKKDCLCFIEAIVHKDDTGK 304 (324)
Q Consensus 257 ~~~~--~~l~~~df~~lA~a~G~-------------al~~a~~~~~~~p~lIeV~id~~~~~~ 304 (324)
.... .++.++||.++|++||+ +|++++ +.++|+||||++++ ++.+
T Consensus 506 ~~~~~~~~~~~~d~~~~a~a~G~~~~~v~~~~~l~~al~~a~--~~~gp~liev~~~~-~~~~ 565 (573)
T 2iht_A 506 RSHDPAVKFGGVDFVALAEANGVDATRATNREELLAALRKGA--ELGRPFLIEVPVNY-DFQP 565 (573)
T ss_dssp SCCGGGTBCCCCCHHHHHHHTTCEEEECCSHHHHHHHHHHHH--TSSSCEEEEEEBCC-CCCG
T ss_pred CCcCccccCCCCCHHHHHHHcCCeEEEeCCHHHHHHHHHHHH--hCCCCEEEEEECCC-CCCc
Confidence 2223 56778999999999998 677764 68899999999999 5444
No 23
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=99.53 E-value=3.5e-15 Score=128.13 Aligned_cols=82 Identities=16% Similarity=0.045 Sum_probs=70.6
Q ss_pred hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc-----------------------------cccCCcE
Q 038651 84 LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM-----------------------------IVEFADA 134 (324)
Q Consensus 84 L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~-----------------------------~l~~aDl 134 (324)
|++||||+|++|+|+.++++.+++++|+|++|+||++|++|||+ ++++|||
T Consensus 31 L~~AkrPvil~G~g~~~~~a~~~l~~lae~~~iPV~~t~~gkg~~~~~hp~~~~~~~G~~G~~~~~~~~~~~~~~~~aDl 110 (170)
T 3cf4_G 31 ISKAKRPLLMVGTLALDPELLDRVVKISKAANIPIAATGSSLAVLADKDVDAKYINAHMLGFYLTDPKWPGLDGNGNYDM 110 (170)
T ss_dssp HHHCSSEEEEECSTTCCHHHHHHHHHHHHHHTCCEEECTTTHHHHTTSSSCEEECCHHHHHHHTTCTTCCCSSSSCCCSE
T ss_pred HHcCCCCEEEECCCccchhHHHHHHHHHHHhCCCEEECcccCcccCCCChhhhcceeeeccccCChhhhhHHHHhhcCCE
Confidence 88999999999999999999999999999999999999998875 2579999
Q ss_pred EEEEcCcc--CCcccccccccCCCCEEEEcCCc
Q 038651 135 YIFVESIF--NDYSSVGYSLLLNKKAILMQPDR 165 (324)
Q Consensus 135 vl~lG~~~--~~~~t~~~~~~~~~~iI~id~d~ 165 (324)
||++|+++ +++.++.|+.+.+.++|+|+.+.
T Consensus 111 vl~iG~~~~~~~~~t~~~~~~~~~~iI~i~~~~ 143 (170)
T 3cf4_G 111 IITIGFKKFYINQVLSAAKNFSNLKTIAIERGY 143 (170)
T ss_dssp EEEESCCHHHHHHHHHHHHHHCCCCEEECSSSC
T ss_pred EEEECCccCccccccccccccCCCeEEEECCCc
Confidence 99999999 98888766654443488776654
No 24
>1ytl_A Acetyl-COA decarboxylase/synthase complex epsilon 2; structural genomics; 1.80A {Archaeoglobus fulgidus} SCOP: c.31.1.6
Probab=99.52 E-value=1.4e-15 Score=131.12 Aligned_cols=80 Identities=15% Similarity=0.140 Sum_probs=65.5
Q ss_pred hhhhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc---------------------c----------cc
Q 038651 82 TALLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM---------------------I----------VE 130 (324)
Q Consensus 82 t~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~---------------------~----------l~ 130 (324)
..|++||||||++|+ +.++++.++|++|+|+ ++||++|++|||. . ++
T Consensus 30 ~lI~~AkRPvIl~Gg-v~~~~A~~eL~~~ae~-~iPVvtT~~g~g~~~~~~~~p~~~~~G~~~~g~~~~~~~~~~~~~~~ 107 (174)
T 1ytl_A 30 NMIKKAKRPLLIVGP-DMTDEMFERVKKFVEK-DITVVATGSAITRFIDAGLGEKVNYAVLHELTQFLLDPDWKGFDGQG 107 (174)
T ss_dssp HHHHHCSSEEEEECS-CCCHHHHHHHHHHHTS-SSEEEEETTHHHHHHHTTCGGGSEEECHHHHHHHHHSTTCCCTTSSC
T ss_pred HHHHcCCCCEEEECC-CCCccHHHHHHHHHHc-CCCEEEcccccCcCCCCCCCccccccccHHHHHHhhhhhhhhhcccC
Confidence 348999999999999 9999999999999999 9999999996654 1 28
Q ss_pred CCcEEEEEcCccC--CcccccccccCCCC-EEEEcC
Q 038651 131 FADAYIFVESIFN--DYSSVGYSLLLNKK-AILMQP 163 (324)
Q Consensus 131 ~aDlvl~lG~~~~--~~~t~~~~~~~~~~-iI~id~ 163 (324)
+|||||++|+||+ ++.++.+..+.+.. +||||.
T Consensus 108 ~aDLvI~iG~rf~~~~~~t~~~~~fap~akii~Idk 143 (174)
T 1ytl_A 108 NYDLVLMLGSIYYHGSQMLAAIKNFAPHIRALAIDR 143 (174)
T ss_dssp CCSEEEEESCCHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred CCCEEEEECCcCCccccccccccccCCCCeEEEeCC
Confidence 9999999999997 45455555443444 999863
No 25
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=99.04 E-value=2e-10 Score=124.74 Aligned_cols=89 Identities=10% Similarity=0.068 Sum_probs=73.3
Q ss_pred CCeEEEecCch-HHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhhC---CCC---------CCCCCCCHHHHHHHH
Q 038651 209 NTAVIAETGDS-WFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIHD---GPY---------NVIENWNYTGLVEAF 275 (324)
Q Consensus 209 ~~~vv~d~G~~-~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~---~~~---------~~l~~~df~~lA~a~ 275 (324)
+..|++..||+ +|.|. +|||.|++++++||++||+||+.|++++.++. ..+ .++.++||.++|++|
T Consensus 953 ~~~Vv~i~GDG~~~~mg-~~eL~ta~~~~~~v~iiVlnN~~yg~tg~Q~s~~t~~~~~t~~~~~g~~~~~~D~~~iA~a~ 1031 (1231)
T 2c42_A 953 KKSVWIFGGDGWAYDIG-YGGLDHVLASGEDVNVFVMDTEVYSNTGGQSSKATPTGAVAKFAAAGKRTGKKDLARMVMTY 1031 (1231)
T ss_dssp CCEEEEEEEHHHHHTTT-HHHHHHHHHTTCSCEEEEEECSSBTTTTCBCCTTSCTTCCBBTBTTCCSSCCCCHHHHHHTT
T ss_pred CCcEEEEeCcHHHHHcc-hHHHHHHHHhCCCeEEEEEECHHHHhHHhhhccCCCCCceeeecccCCCCCchhHHHHHHHC
Confidence 47899999999 67776 59999999999999999999999999985321 111 223568999999999
Q ss_pred HH-----------------HHHHhHHhCCCCeEEEEEEecCC
Q 038651 276 QN-----------------AIETAAVEKKDCLCFIEAIVHKD 300 (324)
Q Consensus 276 G~-----------------al~~a~~~~~~~p~lIeV~id~~ 300 (324)
|+ +|++|+ +.+||+||||.++..
T Consensus 1032 G~~~va~~~v~~~~~~l~~al~eAl--~~~GP~lI~v~~~c~ 1071 (1231)
T 2c42_A 1032 GYVYVATVSMGYSKQQFLKVLKEAE--SFPGPSLVIAYATCI 1071 (1231)
T ss_dssp SSSEEEEECTTTCHHHHHHHHHHHH--HSSSCEEEEEECCCG
T ss_pred CCCEEEEEeccCCHHHHHHHHHHHH--hcCCCEEEEEeecCc
Confidence 98 577775 689999999999874
No 26
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=98.85 E-value=1.1e-09 Score=104.73 Aligned_cols=86 Identities=16% Similarity=0.126 Sum_probs=64.3
Q ss_pred cCCCeEEEecCchHHhhhHHHH-HHHHHHhCCCeEEEEEeCCchhhhhhhhCCCCCCCCCCCHHHHHHHHHH--------
Q 038651 207 SGNTAVIAETGDSWFNCQKDVD-VSTMLRCEQKNIIFLINNGNYTIEVEIHDGPYNVIENWNYTGLVEAFQN-------- 277 (324)
Q Consensus 207 ~~~~~vv~d~G~~~~~~~~~qE-L~Ta~r~~lpviivV~NN~~yg~~~~~~~~~~~~l~~~df~~lA~a~G~-------- 277 (324)
.++..+++..||+++.+...+| |.||.++++|+++||.||+ |++...... ..+.+||.++|++||+
T Consensus 164 ~~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~-~gi~~~~~~----~~~~~d~~~~a~a~G~~~~~Vdg~ 238 (367)
T 1umd_A 164 RTGQVAVCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNF-YAISVDYRH----QTHSPTIADKAHAFGIPGYLVDGM 238 (367)
T ss_dssp TCCCCEEEEEETGGGGSHHHHHHHHHHHHTTCSEEEEEEECS-EETTEEHHH----HCSSSCSGGGGGGTTSCEEEEETT
T ss_pred CCCCeEEEEEcccccccCcHHHHHHHHHHhCcCEEEEEecCC-eeeccChhh----ccCCCCHHHHHHHcCCcEEEeCCC
Confidence 3677889999999997775699 9999999999888888888 998532210 1123566666666666
Q ss_pred -----------HHHHhHHhCCCCeEEEEEEecC
Q 038651 278 -----------AIETAAVEKKDCLCFIEAIVHK 299 (324)
Q Consensus 278 -----------al~~a~~~~~~~p~lIeV~id~ 299 (324)
+++++. +.++|+|||+.+.+
T Consensus 239 d~~av~~a~~~A~~~a~--~~~gP~lIe~~t~r 269 (367)
T 1umd_A 239 DVLASYYVVKEAVERAR--RGEGPSLVELRVYR 269 (367)
T ss_dssp CHHHHHHHHHHHHHHHH--TTCCCEEEEEECCC
T ss_pred CHHHHHHHHHHHHHHHH--hcCCCEEEEEEeec
Confidence 444443 57899999999976
No 27
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=98.69 E-value=9e-09 Score=98.47 Aligned_cols=87 Identities=15% Similarity=0.109 Sum_probs=64.1
Q ss_pred CCCeEEEecCchHHhhhH-HHHHHHHHHhCCCeEEEEEeCCchhhhhhhhCCCCCCCCCCCHHHHHHHHHH---------
Q 038651 208 GNTAVIAETGDSWFNCQK-DVDVSTMLRCEQKNIIFLINNGNYTIEVEIHDGPYNVIENWNYTGLVEAFQN--------- 277 (324)
Q Consensus 208 ~~~~vv~d~G~~~~~~~~-~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~~~~~~l~~~df~~lA~a~G~--------- 277 (324)
++..+++..||+++.... ..+|.||.++++|+++||.|| +|++...... ....+||.++|++||+
T Consensus 163 ~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN-~~gi~~~~~~----~~~~~d~~~~a~a~G~~~~~VdG~D 237 (368)
T 1w85_A 163 KKAVAITYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNN-RFAISTPVEK----QTVAKTLAQKAVAAGIPGIQVDGMD 237 (368)
T ss_dssp CSCCEEEEEETGGGGSHHHHHHHHHHHHTTCCEEEEEEEC-SEETTEEGGG----TCSCSCSGGGGGGTTCCEEEEETTC
T ss_pred CCCeEEEEEchhhhhhcHHHHHHHHHHHHCcCEEEEEEcC-Cccceecccc----ccCCCCHHHHHHHCCCCEEEEcCCC
Confidence 578899999999987643 367999999999999888888 5987532211 1234678888888886
Q ss_pred ------HHHHhHH--hCCCCeEEEEEEecC
Q 038651 278 ------AIETAAV--EKKDCLCFIEAIVHK 299 (324)
Q Consensus 278 ------al~~a~~--~~~~~p~lIeV~id~ 299 (324)
++++|+. .+.++|+|||+++.+
T Consensus 238 ~~av~~a~~~A~~~~r~~~gP~lIe~~t~r 267 (368)
T 1w85_A 238 PLAVYAAVKAARERAINGEGPTLIETLCFR 267 (368)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCEEEEEECCC
T ss_pred HHHHHHHHHHHHHHHHhcCCCEEEEEEeec
Confidence 4444430 146899999999976
No 28
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=98.63 E-value=3e-08 Score=96.00 Aligned_cols=87 Identities=15% Similarity=0.006 Sum_probs=63.1
Q ss_pred CCCeEEEecCchHHhhhH-HHHHHHHHHhCCCeEEEEEeCCchhhhhhhhCCCCCCC-CCCCHHHHHHHHHH--------
Q 038651 208 GNTAVIAETGDSWFNCQK-DVDVSTMLRCEQKNIIFLINNGNYTIEVEIHDGPYNVI-ENWNYTGLVEAFQN-------- 277 (324)
Q Consensus 208 ~~~~vv~d~G~~~~~~~~-~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~~~~~~l-~~~df~~lA~a~G~-------- 277 (324)
++..+++..||+++.+.. .++|.||.+|++|+++|| ||++|++...... .. ..+||.++|++||+
T Consensus 202 ~~~~vv~i~GDGa~~~G~~~Eal~~A~~~~lpvi~Vv-~NN~~gi~~~~~~----~~~~~~d~a~~a~a~G~~~~~VdG~ 276 (407)
T 1qs0_A 202 DTKIASAWIGDGATAESDFHTALTFAHVYRAPVILNV-VNNQWAISTFQAI----AGGESTTFAGRGVGCGIASLRVDGN 276 (407)
T ss_dssp CCCCEEEEEETGGGGSHHHHHHHHHHHHHTCCEEEEE-EECSEETTEEGGG----GTTTTCCSTHHHHHTTCEEEEEETT
T ss_pred CCCEEEEEECCchhhcChHHHHHHHHHHHCcCEEEEE-ECCCcceeecccc----ccCCCCCHHHHHHHcCCeEEEEcCC
Confidence 577889999999987643 388999999999955555 5558998643221 11 35799999999997
Q ss_pred -------HHHHhHH--hCCCCeEEEEEEecC
Q 038651 278 -------AIETAAV--EKKDCLCFIEAIVHK 299 (324)
Q Consensus 278 -------al~~a~~--~~~~~p~lIeV~id~ 299 (324)
++++|+. .+.++|+|||+++.+
T Consensus 277 D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R 307 (407)
T 1qs0_A 277 DFVAVYAASRWAAERARRGLGPSLIEWVTYR 307 (407)
T ss_dssp CHHHHHHHHHHHHHHHHTTSCCEEEEEECCC
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEEEeec
Confidence 4444431 146899999999965
No 29
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=98.57 E-value=2.5e-08 Score=96.44 Aligned_cols=87 Identities=18% Similarity=0.138 Sum_probs=62.9
Q ss_pred CCCeEEEecCchHHhhhH-HHHHHHHHHhCCCeEEEEEeCCchhhhhhhhCCCCCCCCCCCHHHHHHHHHH---------
Q 038651 208 GNTAVIAETGDSWFNCQK-DVDVSTMLRCEQKNIIFLINNGNYTIEVEIHDGPYNVIENWNYTGLVEAFQN--------- 277 (324)
Q Consensus 208 ~~~~vv~d~G~~~~~~~~-~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~~~~~~l~~~df~~lA~a~G~--------- 277 (324)
++..+++..||+++.+.. .++|.||.++++|+++||.|| +|++...... ....+||.++|++||+
T Consensus 183 ~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN-~~~i~~~~~~----~~~~~d~~~~a~a~G~~~~~VdG~D 257 (400)
T 2bfd_A 183 ANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNN-GYAISTPTSE----QYRGDGIAARGPGYGIMSIRVDGND 257 (400)
T ss_dssp CCCCEEEEEETTGGGSHHHHHHHHHHHHTTCCEEEEEEEC-SEETTEEGGG----TCSSSTTGGGTGGGTCEEEEEETTC
T ss_pred CCCeEEEEECchhhhcChHHHHHHHHHHHCcCEEEEEECC-ceeeeecccc----cCCCCCHHHHHHHcCCcEEEEeCCC
Confidence 477889999999986542 399999999999999998888 8988653221 1234677777777776
Q ss_pred ------HHHHhHH--hCCCCeEEEEEEecC
Q 038651 278 ------AIETAAV--EKKDCLCFIEAIVHK 299 (324)
Q Consensus 278 ------al~~a~~--~~~~~p~lIeV~id~ 299 (324)
++++|+. .+.++|+|||+++.+
T Consensus 258 ~~av~~a~~~A~~~ar~~~~P~lIe~~tyR 287 (400)
T 2bfd_A 258 VFAVYNATKEARRRAVAENQPFLIEAMTYR 287 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEEEECCC
T ss_pred HHHHHHHHHHHHHHHHhCCCCEEEEEEeee
Confidence 4444420 136799999999944
No 30
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}
Probab=98.52 E-value=3.7e-08 Score=95.09 Aligned_cols=75 Identities=19% Similarity=0.113 Sum_probs=62.4
Q ss_pred CcCCCC-chHHHHhhhc---CCCCeEeecCchHHHHHHHHHHhhhcCceEEEEeCCcchHHHHHHHHHHhhcCCcchhhh
Q 038651 7 SSSPAD-SSSLLDHLIA---EPGSRDVGCCNELNAGYAADGSARARAVGAYVVTFIVGRLSIINAIAGAYSENFPAATIT 82 (324)
Q Consensus 7 ~~~pG~-~~~l~dal~~---~~~i~~i~~rhE~~A~~aAdgYaR~tg~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It 82 (324)
+.+||. ..++++.|.+ ..++++|.++||++|+.||.|+++..+. +++.|+|||.++++.+|..+..+++|+++++
T Consensus 42 ~~yPgtP~t~i~~~l~~~~~~~g~~~i~~e~E~~a~~~a~Gaa~aG~r-~~~~ts~~G~~~~~d~l~~aa~~~~P~Vi~~ 120 (395)
T 1yd7_A 42 AGYPITPASEIFEAMALYMPLVDGVVIQMEDEIASIAAAIGASWAGAK-AMTATSGPGFSLMQENIGYAVMTETPVVIVD 120 (395)
T ss_dssp EECCBTTTBCHHHHHHHHGGGGTCEEEECSCHHHHHHHHHHHHHTTCC-EEEEEETTHHHHHTTTCC----CCCCEEEEE
T ss_pred EEEECcchHHHHHHHHHhhhhcCcEEEEeCCHHHHHHHHHHHHHhCCc-EEEEeCchHHHHHHHHHHHHHhcCCCEEEEE
Confidence 468999 8888888854 3479999999999999999999999777 4557999999999999999999999999985
No 31
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=98.49 E-value=1.7e-07 Score=96.60 Aligned_cols=83 Identities=16% Similarity=0.100 Sum_probs=67.4
Q ss_pred CCeEEEecCchHHh--hhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhhCCCCCCCCCCCHHHHHHHHHH---------
Q 038651 209 NTAVIAETGDSWFN--CQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIHDGPYNVIENWNYTGLVEAFQN--------- 277 (324)
Q Consensus 209 ~~~vv~d~G~~~~~--~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~~~~~~l~~~df~~lA~a~G~--------- 277 (324)
+..|++..||+.+. +. .++|.||.+++||.+|+|+||++|++....+.. ..+||.+++++||.
T Consensus 187 d~~vv~i~GDG~l~eG~~-~Eal~~A~~~~L~~livI~dnN~~~i~~~~~~~-----~~~d~~~~~~a~G~~~~~~vdG~ 260 (711)
T 3uk1_A 187 DHHTYVFLGDGCLMEGIS-HEACSLAGTLKLNKLIALYDDNGISIDGDVVNW-----FHDDTPKRFEAYGWNVIPNVNGH 260 (711)
T ss_dssp CCCEEEEECHHHHHSHHH-HHHHHHHHHTTCTTEEEEEEECSEETTEEGGGT-----CCCCHHHHHHHTTCEEEEEEETT
T ss_pred CCeEEEEECCcchhhccH-HHHHHHHHHhCCCcEEEEEECCCcccccchhhh-----cCCCHHHHHHHcCCcEEEEeCCC
Confidence 67899999999986 44 499999999999999999999999986554322 25799999999997
Q ss_pred -------HHHHhHHhCCCCeEEEEEEecC
Q 038651 278 -------AIETAAVEKKDCLCFIEAIVHK 299 (324)
Q Consensus 278 -------al~~a~~~~~~~p~lIeV~id~ 299 (324)
+|++|+ +.++|+||+|.+..
T Consensus 261 d~~~l~~Al~~A~--~~~~P~lI~v~T~k 287 (711)
T 3uk1_A 261 DVDAIDAAIAKAK--RSDKPSLICCKTRI 287 (711)
T ss_dssp CHHHHHHHHHHHT--TCSSCEEEEEEC--
T ss_pred CHHHHHHHHHHHH--hCCCCEEEEEcccc
Confidence 566663 57899999999864
No 32
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=98.47 E-value=2.1e-07 Score=94.88 Aligned_cols=83 Identities=23% Similarity=0.145 Sum_probs=69.2
Q ss_pred CCeEEEecCchHHh--hhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhhCCCCCCCCCCCHHHHHHHHHH---------
Q 038651 209 NTAVIAETGDSWFN--CQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIHDGPYNVIENWNYTGLVEAFQN--------- 277 (324)
Q Consensus 209 ~~~vv~d~G~~~~~--~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~~~~~~l~~~df~~lA~a~G~--------- 277 (324)
+..|++.+||+.+. +. .++|.||.+++||.+++|+||++|++....+. ....||.+++++||.
T Consensus 143 d~~v~~v~GDG~~~eG~~-~Eal~~A~~~~L~~livi~nnN~~~i~~~~~~-----~~~~d~~~~~~a~G~~~~~vdGhd 216 (632)
T 3l84_A 143 DHKIYCLCGDGDLQEGIS-YEACSLAGLHKLDNFILIYDSNNISIEGDVGL-----AFNENVKMRFEAQGFEVLSINGHD 216 (632)
T ss_dssp CCCEEEEEEHHHHHSHHH-HHHHHHHHHTTCTTEEEEEEECSEETTEEGGG-----TCCCCHHHHHHHTTCEEEEEETTC
T ss_pred CCeEEEEECCcchhhccH-HHHHHHHHHcCCCcEEEEEECCCcccccchhh-----hcChhHHHHHHHcCCeEEEEeeCC
Confidence 77899999999986 54 49999999999999999999999998765432 125799999999998
Q ss_pred ------HHHHhHHhCCCCeEEEEEEecC
Q 038651 278 ------AIETAAVEKKDCLCFIEAIVHK 299 (324)
Q Consensus 278 ------al~~a~~~~~~~p~lIeV~id~ 299 (324)
+|++|+ +.++|+||+|++..
T Consensus 217 ~~~l~~al~~A~--~~~~P~lI~v~T~k 242 (632)
T 3l84_A 217 YEEINKALEQAK--KSTKPCLIIAKTTI 242 (632)
T ss_dssp HHHHHHHHHHHH--TCSSCEEEEEECCT
T ss_pred HHHHHHHHHHHH--hCCCCEEEEEeeEe
Confidence 666664 68899999999864
No 33
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=98.46 E-value=2.2e-07 Score=95.19 Aligned_cols=84 Identities=12% Similarity=0.028 Sum_probs=69.2
Q ss_pred CCCeEEEecCchHHh--hhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhhCCCCCCCCCCCHHHHHHHHHH--------
Q 038651 208 GNTAVIAETGDSWFN--CQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIHDGPYNVIENWNYTGLVEAFQN-------- 277 (324)
Q Consensus 208 ~~~~vv~d~G~~~~~--~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~~~~~~l~~~df~~lA~a~G~-------- 277 (324)
++..|++..||+.+. +. .++|.||.+++||.+++|+||++|++....... + ..||.+++++||.
T Consensus 149 ~~~~v~~~~GDG~~~eG~~-~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~----~-~~d~~~~~~a~G~~~~~~vdG 222 (651)
T 2e6k_A 149 VDHYTYVLASDGDLMEGVS-GEAASLAGHWGLSKLIVFWDDNRISIDGPTDLA----F-TEDVLARYRAYGWQTLRVEDV 222 (651)
T ss_dssp CCCCEEEEECHHHHHSHHH-HHHHHHHHHTTCTTEEEEEEECCEETTEEGGGT----C-CSCHHHHHHHTTCEEEEESCT
T ss_pred CCCEEEEEEChhhhchhHH-HHHHHHHHHcCCCeEEEEEECCCcccccccccc----c-CccHHHHHHhCCCeEEEEeCC
Confidence 477899999999986 44 488999999999999999999999987654321 2 4799999999997
Q ss_pred --------HHHHhHHhCCCCeEEEEEEecC
Q 038651 278 --------AIETAAVEKKDCLCFIEAIVHK 299 (324)
Q Consensus 278 --------al~~a~~~~~~~p~lIeV~id~ 299 (324)
++++|+ +.++|+||++++.+
T Consensus 223 ~d~~~l~~al~~a~--~~~~P~lI~~~t~k 250 (651)
T 2e6k_A 223 NDLEALRKAIKLAK--LDERPTLIAVRSHI 250 (651)
T ss_dssp TCHHHHHHHHHHHH--HSSSCEEEEEECCT
T ss_pred CCHHHHHHHHHHHH--HCCCCEEEEEEeEe
Confidence 666664 47899999999975
No 34
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=98.44 E-value=3e-07 Score=94.21 Aligned_cols=83 Identities=13% Similarity=0.052 Sum_probs=64.2
Q ss_pred CCeEEEecCchHHh--hhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhhCCCCCCCCCCCHHHHHHHHHH---------
Q 038651 209 NTAVIAETGDSWFN--CQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIHDGPYNVIENWNYTGLVEAFQN--------- 277 (324)
Q Consensus 209 ~~~vv~d~G~~~~~--~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~~~~~~l~~~df~~lA~a~G~--------- 277 (324)
|..|++..||+.+. +. .++|.||.+++||.+|+|+||++|++....+. ....||.+++++||.
T Consensus 148 d~~v~~i~GDG~l~eG~~-~Eal~~A~~~~L~~livi~dnN~~~i~~~~~~-----~~~~d~~~~~~a~G~~~~~~vdG~ 221 (663)
T 3kom_A 148 DHHTYVFLGDGCLMEGVS-HEACSLAGTLGLNKLVAFWDDNNISIDGDTKG-----WFSDNTPERFRAYGWHVIENVDGH 221 (663)
T ss_dssp CCCEEEEECHHHHHSHHH-HHHHHHHHHHTCTTEEEEEEECC-----CGGG-----TCCCCHHHHHHHTTCEEEEEEETT
T ss_pred CCeEEEEECchhhhhchH-HHHHHHHHHhCCCeEEEEEECCCcccccchhh-----hcchhHHHHHHHCCCeEEEEEcCC
Confidence 67889999999986 44 49999999999999999999999998765432 125799999999998
Q ss_pred -------HHHHhHHhC-CCCeEEEEEEecC
Q 038651 278 -------AIETAAVEK-KDCLCFIEAIVHK 299 (324)
Q Consensus 278 -------al~~a~~~~-~~~p~lIeV~id~ 299 (324)
+|++|+ + .++|+||+|++..
T Consensus 222 d~~~l~~al~~A~--~~~~~P~lI~~~T~k 249 (663)
T 3kom_A 222 DFVAIEKAINEAH--SQQQKPTLICCKTVI 249 (663)
T ss_dssp CHHHHHHHHHHHH--HCSSSCEEEEEECCT
T ss_pred CHHHHHHHHHHHH--hcCCCCEEEEEeccc
Confidence 666664 4 6899999999864
No 35
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=98.37 E-value=2.9e-07 Score=93.65 Aligned_cols=86 Identities=15% Similarity=-0.015 Sum_probs=68.0
Q ss_pred CCeEEEecCchHHh--hhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhhCCCCCCCCCCCHHHHHHHHHH---------
Q 038651 209 NTAVIAETGDSWFN--CQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIHDGPYNVIENWNYTGLVEAFQN--------- 277 (324)
Q Consensus 209 ~~~vv~d~G~~~~~--~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~~~~~~l~~~df~~lA~a~G~--------- 277 (324)
+..|++..||+.+. +. .++|.||.+++||.+++|+||++|++..... .....+||.+++++||.
T Consensus 144 ~~~vv~v~GDG~~~eG~~-~Eal~~A~~~~l~~livi~nnN~~~i~~~~~----~~~~~~~~~~~~~a~G~~~~~VdG~d 218 (616)
T 3mos_A 144 SYRVYCLLGDGELSEGSV-WEAMAFASIYKLDNLVAILDINRLGQSDPAP----LQHQMDIYQKRCEAFGWHAIIVDGHS 218 (616)
T ss_dssp SCCEEEEEETGGGGSHHH-HHHHHHHHHTTCTTEEEEEEECSBCSSSBCT----TTTCHHHHHHHHHHTTCEEEEEETTC
T ss_pred CCEEEEEECccccccCcH-HHHHHHHHHcCCCcEEEEEECCCCCCcCCcc----cccChHHHHHHHHHcCCeEEEEcCCC
Confidence 57889999999986 55 4999999999999999999999999854321 11234689999999998
Q ss_pred --HHHHhHHhCCCCeEEEEEEecC
Q 038651 278 --AIETAAVEKKDCLCFIEAIVHK 299 (324)
Q Consensus 278 --al~~a~~~~~~~p~lIeV~id~ 299 (324)
+|.+++....++|+||||++.+
T Consensus 219 ~~~l~~al~~~~~~P~lI~v~T~k 242 (616)
T 3mos_A 219 VEELCKAFGQAKHQPTAIIAKTFK 242 (616)
T ss_dssp HHHHHHHHHSCCSSCEEEEEECCT
T ss_pred HHHHHHHHHhcCCCCEEEEEEEec
Confidence 6666642236899999999964
No 36
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=98.36 E-value=6.6e-07 Score=92.00 Aligned_cols=84 Identities=14% Similarity=0.115 Sum_probs=68.3
Q ss_pred CCeEEEecCchHHh--hhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhhCCCCCCCCCCCHHHHHHHHHH---------
Q 038651 209 NTAVIAETGDSWFN--CQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIHDGPYNVIENWNYTGLVEAFQN--------- 277 (324)
Q Consensus 209 ~~~vv~d~G~~~~~--~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~~~~~~l~~~df~~lA~a~G~--------- 277 (324)
+..|++.+||+.+. +. .++|.||.+++||.+|+|+||++|++....+. ....||.+++++||.
T Consensus 172 d~~v~~i~GDG~l~eG~~-~Eal~~A~~~~L~~livI~dnN~~~i~~~~~~-----~~~~d~~~~~~a~G~~~~~v~DG~ 245 (690)
T 3m49_A 172 DHYTYAICGDGDLMEGVS-AEASSLAAHLQLGRLVVLYDSNDISLDGDLNR-----SFSESVEDRYKAYGWQVIRVEDGN 245 (690)
T ss_dssp CCCEEEEECHHHHHSHHH-HHHHHHHHHTTCTTEEEEEEECSBCSSSBGGG-----TCCCCHHHHHHHHTCEEEEESCTT
T ss_pred CCeEEEEECchhhhhccH-HHHHHHHHHhCCCeEEEEEECCCeecccchhh-----ccchhHHHHHHHcCCcEEEEecCC
Confidence 67888999999986 44 49999999999999999999999998765432 124799999999998
Q ss_pred -------HHHHhHHhCCCCeEEEEEEecC
Q 038651 278 -------AIETAAVEKKDCLCFIEAIVHK 299 (324)
Q Consensus 278 -------al~~a~~~~~~~p~lIeV~id~ 299 (324)
+|++|+ ...++|+||+|++..
T Consensus 246 d~~~l~~Al~~a~-~~~~~P~lI~v~T~k 273 (690)
T 3m49_A 246 DIEAIAKAIEEAK-ADEKRPTLIEVRTTI 273 (690)
T ss_dssp CHHHHHHHHHHHH-HCCSSCEEEEEECCT
T ss_pred CHHHHHHHHHHHH-hcCCCCEEEEEEeec
Confidence 566664 227899999999864
No 37
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=98.36 E-value=5.7e-07 Score=92.31 Aligned_cols=85 Identities=14% Similarity=0.058 Sum_probs=68.3
Q ss_pred CCeEEEecCchHHh--hhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhhCCCCCCCCCCCHHHHHHHHHH---------
Q 038651 209 NTAVIAETGDSWFN--CQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIHDGPYNVIENWNYTGLVEAFQN--------- 277 (324)
Q Consensus 209 ~~~vv~d~G~~~~~--~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~~~~~~l~~~df~~lA~a~G~--------- 277 (324)
+..|++..||+.+. +. .++|.||.+++||.+++|+||++|++....... + ..||.+++++||.
T Consensus 146 ~~~v~~~~GDG~~~eG~~-~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~----~-~~d~~~~~~a~G~~~~~~vdG~ 219 (669)
T 2r8o_A 146 DHYTYAFMGDGCMMEGIS-HEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGW----F-TDDTAMRFEAYGWHVIRDIDGH 219 (669)
T ss_dssp CCCEEEEECHHHHHSHHH-HHHHHHHHHTTCTTEEEEEEECSEETTEEGGGT----C-CCCHHHHHHHTTCEEEEEEETT
T ss_pred CCeEEEEECHhHhcchHH-HHHHHHHHHcCCCcEEEEEECCCcEeccccccc----c-CccHHHHHHHCCCeEEeEECCC
Confidence 67899999999987 44 488999999999999999999999987543321 1 4699999999997
Q ss_pred -------HHHHhHHhCCCCeEEEEEEecCC
Q 038651 278 -------AIETAAVEKKDCLCFIEAIVHKD 300 (324)
Q Consensus 278 -------al~~a~~~~~~~p~lIeV~id~~ 300 (324)
++++|+ ...++|+||++++.+.
T Consensus 220 d~~~l~~al~~a~-~~~~~P~lI~~~T~kg 248 (669)
T 2r8o_A 220 DAASIKRAVEEAR-AVTDKPSLLMCKTIIG 248 (669)
T ss_dssp CHHHHHHHHHHHH-HCCSSCEEEEEECCTT
T ss_pred CHHHHHHHHHHHH-hcCCCCEEEEEEeEec
Confidence 566664 2368999999999763
No 38
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=98.30 E-value=8.6e-07 Score=91.08 Aligned_cols=85 Identities=14% Similarity=0.053 Sum_probs=68.4
Q ss_pred CCCeEEEecCchHHh--hhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhhCCCCCCCCCCCHHHHHHHHHH--------
Q 038651 208 GNTAVIAETGDSWFN--CQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIHDGPYNVIENWNYTGLVEAFQN-------- 277 (324)
Q Consensus 208 ~~~~vv~d~G~~~~~--~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~~~~~~l~~~df~~lA~a~G~-------- 277 (324)
++..|++..||+.+. +. .++|.||.+++|+.+|+|+||++|++...... + + .+||.+++++||.
T Consensus 158 ~~~~v~~i~GDG~~~eG~~-~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~--~--~-~~d~~~~~~a~G~~~~~~vdG 231 (675)
T 1itz_A 158 VDHYTYVILGDGCQMEGIA-NEACSLAGHWGLGKLIAFYDDNHISIDGDTEI--A--F-TEDVSTRFEALGWHTIWVKNG 231 (675)
T ss_dssp CCCCEEEEECHHHHHSHHH-HHHHHHHHHTTCTTEEEEEEECSEETTEEGGG--T--C-CSCHHHHHHHTTCEEEEESCT
T ss_pred CCCEEEEEECHhHhchhHH-HHHHHHHHHhCCCcEEEEEECCCccCCCChhh--h--c-ChhHHHHHHhCCCEEEEEecC
Confidence 577899999999987 54 49999999999999999999999998654332 1 2 5799999999986
Q ss_pred ---------HHHHhHHhCCCCeEEEEEEecC
Q 038651 278 ---------AIETAAVEKKDCLCFIEAIVHK 299 (324)
Q Consensus 278 ---------al~~a~~~~~~~p~lIeV~id~ 299 (324)
++++|+ ...++|+||++++.+
T Consensus 232 ~~d~~~l~~al~~a~-~~~~~P~lI~~~T~k 261 (675)
T 1itz_A 232 NTGYDDIRAAIKEAK-AVTDKPTLIKVTTTI 261 (675)
T ss_dssp TTCHHHHHHHHHHHH-HCCSSCEEEEEECCT
T ss_pred CCCHHHHHHHHHHHH-HCCCCeEEEEEeeec
Confidence 455553 236899999999976
No 39
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=98.29 E-value=7.9e-07 Score=90.55 Aligned_cols=88 Identities=11% Similarity=0.132 Sum_probs=56.4
Q ss_pred CCCeEEEecCchHHh--hhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhhC-----------CCCCC-------CC---
Q 038651 208 GNTAVIAETGDSWFN--CQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIHD-----------GPYNV-------IE--- 264 (324)
Q Consensus 208 ~~~~vv~d~G~~~~~--~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~-----------~~~~~-------l~--- 264 (324)
++..|++..||+.+. +. +++|.||.++++|++ ||+||++|++.+..+. ..|.. +.
T Consensus 142 ~~~~Vv~v~GDG~~~~G~~-~EaL~~A~~~~~pli-~vvnnN~~~i~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 219 (621)
T 2o1s_A 142 KNRRTVCVIGDGAITAGMA-FEAMNHAGDIRPDML-VILNDNEMSISENVGALNNHLAQLLSGKLYSSLREGGKKVFSGV 219 (621)
T ss_dssp SCCCEEEEEETTGGGSHHH-HHHHHHHHHHCCSEE-EEEEECC-------------------------------------
T ss_pred CCCeEEEEEchhhhhccHH-HHHHHHHHhhCCCEE-EEEeCCCcccCCCcchHHHHHHhhhcchhHHHHHHHHHHHHhcc
Confidence 678899999999986 43 489999999999986 5567779998764431 11211 10
Q ss_pred ---------CCCH-------HHHHHHHHH----------------HHHHhHHhCCCCeEEEEEEecC
Q 038651 265 ---------NWNY-------TGLVEAFQN----------------AIETAAVEKKDCLCFIEAIVHK 299 (324)
Q Consensus 265 ---------~~df-------~~lA~a~G~----------------al~~a~~~~~~~p~lIeV~id~ 299 (324)
..|| .+++++||+ +|++|+ +.++|+||||++.+
T Consensus 220 p~~~~~~~r~~~~~~~~~~p~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~--~~~gP~lI~v~t~k 284 (621)
T 2o1s_A 220 PPIKELLKRTEEHIKGMVVPGTLFEELGFNYIGPVDGHDVLGLITTLKNMR--DLKGPQFLHIMTKK 284 (621)
T ss_dssp -------------------CHHHHHHTTCEEEEEEETTCHHHHHHHHHHHH--HSCSEEEEEEECCC
T ss_pred chHHHHHHHHHHHhhhccChhhHHHHCCCeEeeeeCCCCHHHHHHHHHHHH--HcCCCEEEEEEEec
Confidence 0245 689999996 666664 56899999999975
No 40
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=98.29 E-value=3.2e-07 Score=93.58 Aligned_cols=91 Identities=15% Similarity=0.147 Sum_probs=61.4
Q ss_pred cCCCeEEEecCchHHh--hhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhh-----------CCCCCCC----------
Q 038651 207 SGNTAVIAETGDSWFN--CQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIH-----------DGPYNVI---------- 263 (324)
Q Consensus 207 ~~~~~vv~d~G~~~~~--~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~-----------~~~~~~l---------- 263 (324)
.++..|++..||+.+. +. ++||.||.++++|++ ||+||++|++.+..+ ...|..+
T Consensus 143 ~~~~~Vv~v~GDG~~~~G~~-~EaL~~A~~~~~pli-~IvnnN~~~i~~~~~~~~~~~~~l~~~~~y~~~~~~~~~~~~~ 220 (629)
T 2o1x_A 143 GKDFHVAAVIGDGSLTGGMA-LAALNTIGDMGRKML-IVLNDNEMSISENVGAMNKFMRGLQVQKWFQEGEGAGKKAVEA 220 (629)
T ss_dssp TCCCCEEEEEETTGGGSHHH-HHHHHHHHHHCCSEE-EEEEECSBSSSBCCSSHHHHC----------------------
T ss_pred CCCCeEEEEEchhhhhccHH-HHHHHHHHhhCCCEE-EEEECCCCCCCCChhHHHHHHHHHhhchhHHHHHHHHHHHHhc
Confidence 3678899999999987 54 499999999999975 557888998754221 1122211
Q ss_pred -CC---------CCHH---------HHHHHHHH----------------HHHHhHHhCCCCeEEEEEEecCCC
Q 038651 264 -EN---------WNYT---------GLVEAFQN----------------AIETAAVEKKDCLCFIEAIVHKDD 301 (324)
Q Consensus 264 -~~---------~df~---------~lA~a~G~----------------al~~a~~~~~~~p~lIeV~id~~~ 301 (324)
.. .||. +++++||+ +|++|+ +.++|+||||++.+..
T Consensus 221 ~g~~~~~~~~~~~d~~~~~~~p~~~~~~ea~G~~~~g~vdG~d~~~l~~al~~A~--~~~~P~lI~v~t~kg~ 291 (629)
T 2o1x_A 221 VSKPLADFMSRAKNSTRHFFDPASVNPFAAMGVRYVGPVDGHNVQELVWLLERLV--DLDGPTILHIVTTKGK 291 (629)
T ss_dssp -----------------------CCCTTGGGTCEEEEEEESSCHHHHHHHHHHHT--TSSSEEEEEEECCTTT
T ss_pred cchHHHHHHHHHHHHHHhhcCcccchHHHhcCCeEEeeECCcCHHHHHHHHHHHH--hcCCCEEEEEEEecCC
Confidence 11 1654 78999997 666664 6789999999998743
No 41
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=98.29 E-value=1.2e-06 Score=90.06 Aligned_cols=84 Identities=18% Similarity=0.118 Sum_probs=67.5
Q ss_pred CCeEEEecCchHHh--hhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhhCCCCCCCCCCCHHHHHHHHHH---------
Q 038651 209 NTAVIAETGDSWFN--CQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIHDGPYNVIENWNYTGLVEAFQN--------- 277 (324)
Q Consensus 209 ~~~vv~d~G~~~~~--~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~~~~~~l~~~df~~lA~a~G~--------- 277 (324)
+..|++..||+.+. +. .++|.||.+++||.+++|+||++|++....... + ..||.+++++||.
T Consensus 148 ~~~vv~i~GDG~~~eG~~-~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~----~-~~d~~~~~~a~G~~~~~~vdG~ 221 (680)
T 1gpu_A 148 DNYTYVFLGDGCLQEGIS-SEASSLAGHLKLGNLIAIYDDNKITIDGATSIS----F-DEDVAKRYEAYGWEVLYVENGN 221 (680)
T ss_dssp CCCEEEEECHHHHHSHHH-HHHHHHHHHTTCTTEEEEEEECSEETTEEGGGT----C-CCCHHHHHHHHTCEEEEESCTT
T ss_pred CCeEEEEECCCccchhhH-HHHHHHHHHhCCCcEEEEEECCCceEecccccc----c-CccHHHHHHhcCCeEEEEecCC
Confidence 67899999999986 54 488999999999999999999999987543321 1 4799999999986
Q ss_pred --------HHHHhHHhCCCCeEEEEEEecC
Q 038651 278 --------AIETAAVEKKDCLCFIEAIVHK 299 (324)
Q Consensus 278 --------al~~a~~~~~~~p~lIeV~id~ 299 (324)
++++|+ ...++|+||++++.+
T Consensus 222 ~d~~~l~~al~~A~-~~~~~P~lI~~~T~k 250 (680)
T 1gpu_A 222 EDLAGIAKAIAQAK-LSKDKPTLIKMTTTI 250 (680)
T ss_dssp TCHHHHHHHHHHHH-HCTTSCEEEEEECCT
T ss_pred CCHHHHHHHHHHHH-HCCCCCEEEEEEeec
Confidence 455554 236899999999865
No 42
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=98.21 E-value=3e-06 Score=80.84 Aligned_cols=89 Identities=15% Similarity=0.108 Sum_probs=63.6
Q ss_pred CCCeEEEecCchHHhhhH-HHHHHHHHHhCCCeEEEEEeCCchhhhhhhh----CCCC----CCC-----CCCCHHHHHH
Q 038651 208 GNTAVIAETGDSWFNCQK-DVDVSTMLRCEQKNIIFLINNGNYTIEVEIH----DGPY----NVI-----ENWNYTGLVE 273 (324)
Q Consensus 208 ~~~~vv~d~G~~~~~~~~-~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~----~~~~----~~l-----~~~df~~lA~ 273 (324)
++..+++..||+++.... .++|.||.++++|+++||.|| +|++..... ...| ..+ ...|..++.+
T Consensus 161 ~~~~vv~~~GDGa~~~G~~~Ealn~A~~~~lpvi~vv~NN-~~g~~t~~~~~~~~~~~~~ra~g~p~~~VdG~D~~av~~ 239 (365)
T 2ozl_A 161 KDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENN-RYGMGTSVERAAASTDYYKRGDFIPGLRVDGMDILCVRE 239 (365)
T ss_dssp CCCCEEEEEETTGGGCHHHHHHHHHHHHTTCCEEEEEEEC-SEETTEEHHHHCSCCCGGGTTTTSCEEEEETTCHHHHHH
T ss_pred CCceEEEEECchhhhccHHHHHHHHHHHHCcCEEEEEECC-CcccCCCcccccCCCCHHHHhCCCCEEEEeCCCHHHHHH
Confidence 577889999999987643 368999999999988777666 798754221 1111 111 2346788887
Q ss_pred HHHHHHHHhHHhCCCCeEEEEEEecC
Q 038651 274 AFQNAIETAAVEKKDCLCFIEAIVHK 299 (324)
Q Consensus 274 a~G~al~~a~~~~~~~p~lIeV~id~ 299 (324)
++..|++.+. +.++|+|||+.+.+
T Consensus 240 a~~~A~~~~r--~~~gP~lIe~~t~R 263 (365)
T 2ozl_A 240 ATRFAAAYCR--SGKGPILMELQTYR 263 (365)
T ss_dssp HHHHHHHHHH--TTCCCEEEEEECCC
T ss_pred HHHHHHHHHH--hCCCCEEEEEEeec
Confidence 7777777764 67899999999953
No 43
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=98.04 E-value=8.3e-06 Score=83.73 Aligned_cols=86 Identities=12% Similarity=-0.004 Sum_probs=66.3
Q ss_pred CCCeEEEecCchHHhhhH-HHHHHHHHHhCCCeEEEEEeCCchhhhhhhhCCCCCCCCCCCHHHHHHHHHH---------
Q 038651 208 GNTAVIAETGDSWFNCQK-DVDVSTMLRCEQKNIIFLINNGNYTIEVEIHDGPYNVIENWNYTGLVEAFQN--------- 277 (324)
Q Consensus 208 ~~~~vv~d~G~~~~~~~~-~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~~~~~~l~~~df~~lA~a~G~--------- 277 (324)
.+..|++..||+.+.... .++|.||.+++||.+|+|+||++|++....... + ..|+.+.+++||.
T Consensus 147 ~d~~v~~~~GDG~~~eG~~~Eal~~A~~~~L~~li~i~d~N~~~i~~~~~~~----~-~~d~~~~~~a~G~~~~~~vdG~ 221 (673)
T 1r9j_A 147 VDHYTYVYCGDGCLMEGVCQEALSLAGHLALEKLIVIYDSNYISIDGSTSLS----F-TEQCHQKYVAMGFHVIEVKNGD 221 (673)
T ss_dssp CCCCEEEEECHHHHHSHHHHHHHHHHHHHTCTTEEEEEEECSBCSSSBGGGT----C-CCCHHHHHHHTTCEEEEESCTT
T ss_pred CCCEEEEEECcchhcccHHHHHHHHHHHhCCCcEEEEEECCCCccccchhhc----c-CHhHHHHHHHCCCeEEEEeCCC
Confidence 477899999999987432 377999999999999999999999986543221 1 4588888888876
Q ss_pred --------HHHHhHHhCCCCeEEEEEEecC
Q 038651 278 --------AIETAAVEKKDCLCFIEAIVHK 299 (324)
Q Consensus 278 --------al~~a~~~~~~~p~lIeV~id~ 299 (324)
++++|. ...++|+||++++..
T Consensus 222 ~d~~~l~~Al~~A~-~~~~~P~lI~~~T~k 250 (673)
T 1r9j_A 222 TDYEGLRKALAEAK-ATKGKPKMIVQTTTI 250 (673)
T ss_dssp TCHHHHHHHHHHHH-HCCSSCEEEEEECCT
T ss_pred CCHHHHHHHHHHHH-HcCCCCEEEEEeccc
Confidence 455553 237899999999865
No 44
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=97.44 E-value=1.9e-05 Score=82.95 Aligned_cols=89 Identities=11% Similarity=0.066 Sum_probs=61.1
Q ss_pred CCCeEEEecCchHH-hhhHHHH-HHHHHHhCCC---eEEEEEeCCchhhhhhhh---CCCC-CC-----------CCCCC
Q 038651 208 GNTAVIAETGDSWF-NCQKDVD-VSTMLRCEQK---NIIFLINNGNYTIEVEIH---DGPY-NV-----------IENWN 267 (324)
Q Consensus 208 ~~~~vv~d~G~~~~-~~~~~qE-L~Ta~r~~lp---viivV~NN~~yg~~~~~~---~~~~-~~-----------l~~~d 267 (324)
.+.++++-.||+.| +-..++| |.+|..+++| +++||.|| +|++....+ ...| .+ ....|
T Consensus 276 ~~~~vv~~~GDGa~~~eG~v~Ealn~A~~~~lp~g~vi~iv~NN-~~g~st~~~~~~s~~~~~~~a~a~G~p~~~VdG~D 354 (868)
T 2yic_A 276 FSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNN-QIGFTTAPTDSRSSEYCTDVAKMIGAPIFHVNGDD 354 (868)
T ss_dssp CCEEEEEEEEHHHHHHCHHHHHHHTTTTCTTTCCSCCEEEEEEC-SCBTTBCHHHHCSSSSTTGGGGGGTCCEEEEETTC
T ss_pred CCceEEEEECCcccccccHHHHHHHHHHhcCCCCCCeEEEEEcC-CcccccCccccccccCHHHHHHhCCCcEEEEeCCC
Confidence 35678899999997 3334588 9999999999 99999988 898754322 1111 11 12345
Q ss_pred HHHHHHHHHHHHHHhHHhCCCCeEEEEEEecC
Q 038651 268 YTGLVEAFQNAIETAAVEKKDCLCFIEAIVHK 299 (324)
Q Consensus 268 f~~lA~a~G~al~~a~~~~~~~p~lIeV~id~ 299 (324)
+.++.+++..|++.+. +.++|+|||+.+-+
T Consensus 355 ~~av~~a~~~A~~~ar--~~~~PvlIe~~tyR 384 (868)
T 2yic_A 355 PEACAWVARLAVDFRQ--AFKKDVVIDMLCYR 384 (868)
T ss_dssp HHHHHHHHHHHHHHHH--HHCCCEEEEEECCC
T ss_pred HHHHHHHHHHHHHHHH--hCCCCEEEEEEeec
Confidence 6666666655665553 46899999999854
No 45
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=97.27 E-value=0.00037 Score=71.67 Aligned_cols=85 Identities=15% Similarity=0.045 Sum_probs=64.6
Q ss_pred CCeEEEecCchHHhhhH-HHHHHHHHHhCCCeEEEEEeCCchhhhhhhhCCCCCCCCCCCHHHHHHHHHH----------
Q 038651 209 NTAVIAETGDSWFNCQK-DVDVSTMLRCEQKNIIFLINNGNYTIEVEIHDGPYNVIENWNYTGLVEAFQN---------- 277 (324)
Q Consensus 209 ~~~vv~d~G~~~~~~~~-~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~~~~~~l~~~df~~lA~a~G~---------- 277 (324)
+..+++..||+.+.... ...+.+|.+++||-+|+|+||++|++...... ....|+.+.+++||.
T Consensus 168 ~~~v~~~~GDG~l~eG~~~EAl~~A~~~~L~nli~i~d~N~~si~~~~~~-----~~~~~~~~~~~a~G~~~~~V~DG~D 242 (700)
T 3rim_A 168 DHYIYVIASDGDIEEGVTSEASSLAAVQQLGNLIVFYDRNQISIEDDTNI-----ALCEDTAARYRAYGWHVQEVEGGEN 242 (700)
T ss_dssp CCCEEEEEEHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGG-----TCCCCHHHHHHHHTCEEEEEECTTC
T ss_pred CCeEEEEECCcccccChHHHHHHHHHHcCCCcEEEEEECCCcccccchhh-----ccchhHHHHHHHcCCeEEEECCCCC
Confidence 56788999999875432 36799999999998888999999987543221 124689999999987
Q ss_pred ------HHHHhHHhCCCCeEEEEEEecC
Q 038651 278 ------AIETAAVEKKDCLCFIEAIVHK 299 (324)
Q Consensus 278 ------al~~a~~~~~~~p~lIeV~id~ 299 (324)
++++|. ...++|+||++++-.
T Consensus 243 ~~al~~Al~~A~-~~~~~P~lI~~~T~k 269 (700)
T 3rim_A 243 VVGIEEAIANAQ-AVTDRPSFIALRTVI 269 (700)
T ss_dssp HHHHHHHHHHHH-HCCSSCEEEEEECCT
T ss_pred HHHHHHHHHHHH-HcCCCCEEEEEEEEe
Confidence 566664 236899999999864
No 46
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=96.31 E-value=0.0022 Score=69.12 Aligned_cols=89 Identities=11% Similarity=0.066 Sum_probs=61.1
Q ss_pred CCCeEEEecCchHH-hhhHHHH-HHHHHHhCCC---eEEEEEeCCchhhhhhhh---CCCC-CC-----------CCCCC
Q 038651 208 GNTAVIAETGDSWF-NCQKDVD-VSTMLRCEQK---NIIFLINNGNYTIEVEIH---DGPY-NV-----------IENWN 267 (324)
Q Consensus 208 ~~~~vv~d~G~~~~-~~~~~qE-L~Ta~r~~lp---viivV~NN~~yg~~~~~~---~~~~-~~-----------l~~~d 267 (324)
.+.++++-.||+.| +-...+| |.+|..+++| +++||.|| +|++..... ...| .+ ....|
T Consensus 521 ~~~~~v~~~GDGa~~~eG~~~Ealn~A~~~~lp~g~vi~iv~NN-~~gist~~~~~~s~~~~~~~a~a~G~p~~~VdG~D 599 (1113)
T 2xt6_A 521 FSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNN-QIGFTTAPTDSRSSEYCTDVAKMIGAPIFHVNGDD 599 (1113)
T ss_dssp CCEEEEEEEEHHHHHHCTHHHHHHTTTTCTTTCCSCCEEEEEEC-SCBTTBCHHHHCSSSSTTGGGGGGTCCEEEEETTC
T ss_pred CCcEEEEEECCcccccccHHHHHHHHHhhcCCCCCCeEEEEEeC-CcccccCccccccccCHHHHHHhcCCcEEEEcCCC
Confidence 35678899999997 3334588 9999999999 99999988 888754221 1111 10 12346
Q ss_pred HHHHHHHHHHHHHHhHHhCCCCeEEEEEEecC
Q 038651 268 YTGLVEAFQNAIETAAVEKKDCLCFIEAIVHK 299 (324)
Q Consensus 268 f~~lA~a~G~al~~a~~~~~~~p~lIeV~id~ 299 (324)
+.++.+++..|++.+. +.++|+|||+.+-+
T Consensus 600 ~~av~~a~~~A~~~~r--~~~~PvlIe~~tyR 629 (1113)
T 2xt6_A 600 PEACAWVARLAVDFRQ--AFKKDVVIDMLCYR 629 (1113)
T ss_dssp HHHHHHHHHHHHHHHH--HHCCCEEEEEECCC
T ss_pred HHHHHHHHHHHHHHHH--hcCCCEEEEEEeEc
Confidence 7777766666666553 46799999999843
No 47
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=96.30 E-value=0.00087 Score=70.94 Aligned_cols=89 Identities=13% Similarity=0.086 Sum_probs=55.7
Q ss_pred CCCeEEEecCchHH-hhhHHHH-HHHHHHhCCC---eEEEEEeCCchhhhh-hhhC---CCC-------CCC-----CCC
Q 038651 208 GNTAVIAETGDSWF-NCQKDVD-VSTMLRCEQK---NIIFLINNGNYTIEV-EIHD---GPY-------NVI-----ENW 266 (324)
Q Consensus 208 ~~~~vv~d~G~~~~-~~~~~qE-L~Ta~r~~lp---viivV~NN~~yg~~~-~~~~---~~~-------~~l-----~~~ 266 (324)
.+..+++..||+.+ .....+| |.+|..+++| +++||.||+ |++.. .... ..| ..+ ..-
T Consensus 347 ~~~~vv~v~GDGa~a~qG~~~Ealn~A~~~~lp~gg~I~vv~nN~-~~ist~~~~~~~~~~~~~~~a~a~g~p~~~VdG~ 425 (933)
T 2jgd_A 347 NKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQ-VGFTTSNPLDARSTPYCTDIGKMVQAPIFHVNAD 425 (933)
T ss_dssp GGEEEEEEEEHHHHHHCTHHHHHHHHTTSTTTCCSCCEEEEEECC----------------CGGGGGGTTTCCEEEEETT
T ss_pred CCeEEEEEECCcccccCCHHHHHHHHhhccCCCCCceEEEEEeCC-ccccCCCHHhcccchhHHHHHHHcCCCEEEECCC
Confidence 34578899999998 4444588 9999999999 888888776 88755 3221 011 011 134
Q ss_pred CHHHHHHHHHHHHHHhHHhCCCCeEEEEEEecC
Q 038651 267 NYTGLVEAFQNAIETAAVEKKDCLCFIEAIVHK 299 (324)
Q Consensus 267 df~~lA~a~G~al~~a~~~~~~~p~lIeV~id~ 299 (324)
|..++.+++..|.+.+. ..++|+|||+.+-+
T Consensus 426 D~~av~~a~~~A~e~~r--~~~~P~lIe~~tyR 456 (933)
T 2jgd_A 426 DPEAVAFVTRLALDFRN--TFKRDVFIDLVCYR 456 (933)
T ss_dssp CHHHHHHHHHHHHHHHH--HHCCCEEEEEECCC
T ss_pred CHHHHHHHHHHHHHHHH--hcCCCEEEEEeeee
Confidence 66666666666665553 46789999998854
No 48
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=91.47 E-value=0.17 Score=53.20 Aligned_cols=44 Identities=20% Similarity=0.254 Sum_probs=35.5
Q ss_pred CCCeEEEecCchHHhhh-HHHHHHHHHHhCCCeEEEEEeCCchhh
Q 038651 208 GNTAVIAETGDSWFNCQ-KDVDVSTMLRCEQKNIIFLINNGNYTI 251 (324)
Q Consensus 208 ~~~~vv~d~G~~~~~~~-~~qEL~Ta~r~~lpviivV~NN~~yg~ 251 (324)
++..|++..||+.+.-. .+..|..|.+++|+-+|||+||+.|.+
T Consensus 220 ~~~~v~aviGDG~l~eG~~~EAl~~A~~~~L~nli~Vvn~N~~si 264 (886)
T 2qtc_A 220 SKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQRL 264 (886)
T ss_dssp TTCCEEEEEETGGGGSHHHHTTHHHHHHTTCTTEEEEEEECSBCS
T ss_pred CCCEEEEEECCccccccchHHHHHHHHHcCCCcEEEEEECCCccc
Confidence 56788999999987522 248899999999998888889998865
No 49
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=90.79 E-value=0.69 Score=50.46 Aligned_cols=113 Identities=17% Similarity=0.040 Sum_probs=76.4
Q ss_pred cCCCC-chHHHHhhh---c--CCC-----CeEeecCchHHHHHHHHHHhhhcCceEEEEeCCcchHHHHHHHHHHhhcCC
Q 038651 8 SSPAD-SSSLLDHLI---A--EPG-----SRDVGCCNELNAGYAADGSARARAVGAYVVTFIVGRLSIINAIAGAYSENF 76 (324)
Q Consensus 8 ~~pG~-~~~l~dal~---~--~~~-----i~~i~~rhE~~A~~aAdgYaR~tg~gv~~~t~GpG~~N~~tgla~A~~d~~ 76 (324)
++|+. ..++.+.+. . ..+ ..++..-+|.+|..||-|.+-.....++ .|+|||..-+.-.|..+....+
T Consensus 26 ~YPITPstei~e~l~~~~~~g~~~~~G~~~~v~~~esE~aA~~aaiGAa~aGaR~~t-~Ts~~Gl~lm~e~l~~~ag~~~ 104 (1231)
T 2c42_A 26 IYPITPSSTMGEEADDWAAQGRKNIFGQTLTIREMQSEAGAAGAVHGALAAGALTTT-FTASQGLLLMIPNMYKISGELL 104 (1231)
T ss_dssp ECCCTTTHHHHHHHHHHHHHTCCCTTSCCCEEEECSSHHHHHHHHHHHHHTTCCEEE-EECHHHHHHHHHHHHHHHHTTC
T ss_pred EECCCCchHHHHHHHHHHHcCCchhcCCceEEEecCChHHHHHHHHHHHHcCChHhh-hccHHHHHHHHHHHHHHhCCCC
Confidence 56776 666666663 2 122 4899999999999999998866335554 5899999988889977776789
Q ss_pred cchhhhh--------------------hhcCCCcEEEECCCCCccchHH---HHHHHHHHhCCcEEecCCC
Q 038651 77 PAATITA--------------------LLKAVKPAMIGGPKLSVSKATI---AFVELADACGYAFAVMPSA 124 (324)
Q Consensus 77 Pvl~It~--------------------L~~AkrPvIl~G~g~~~~~a~~---~l~~lae~l~~Pv~tt~~g 124 (324)
|+|+... ......|++.... + .++.+ .--++||+...||+.-..+
T Consensus 105 P~Vi~va~R~g~~~glsi~~~hsd~~~ar~~G~~vl~pss-~--QEa~dl~~~Af~lAek~~~PVi~~~Dg 172 (1231)
T 2c42_A 105 PGVFHVTARAIAAHALSIFGDHQDIYAARQTGFAMLASSS-V--QEAHDMALVAHLAAIESNVPFMHFFDG 172 (1231)
T ss_dssp CCEEEEEECCCCSSSBCCSCCSHHHHTTTTSSCEEEECCS-H--HHHHHHHHHHHHHHHHHCCCEEEEEET
T ss_pred CEEEEECCCCccCCCCcCCCchhhHHHHhcCCcEEEECCC-H--HHHHHHHHHHHHHHHHcCCCEEEEecC
Confidence 9998842 1223345554433 2 23333 3345789999999865544
No 50
>1pno_A NAD(P) transhydrogenase subunit beta; nucleotide binding fold, oxidoreductase; HET: NAP; 2.10A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1pnq_A* 1xlt_C* 2oor_C* 1ptj_C* 2oo5_C*
Probab=87.93 E-value=0.22 Score=41.60 Aligned_cols=59 Identities=25% Similarity=0.308 Sum_probs=42.4
Q ss_pred hhcCCCcEEEECCCCCccchHHHHHHHHHHh---CCcEE--ecCCCCCc--------------------------cccCC
Q 038651 84 LLKAVKPAMIGGPKLSVSKATIAFVELADAC---GYAFA--VMPSAKGM--------------------------IVEFA 132 (324)
Q Consensus 84 L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l---~~Pv~--tt~~gkg~--------------------------~l~~a 132 (324)
|..|++-+|+-|+|..-+++.-.+.+|++.| |+-|- --+-+..+ -+.+.
T Consensus 20 l~~A~~ViIvPGYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHPVAGRMPGhmNVLLAEA~VPYd~v~EMdeIN~df~~t 99 (180)
T 1pno_A 20 MKNASKVIIVPGYGMAVAQAQHALREMADVLKKEGVEVSYAIHPVAGRMPGHMNVLLAEANVPYDEVFELEEINSSFQTA 99 (180)
T ss_dssp HHTCSEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEEECTTCTTSTTHHHHHHHHTTCCGGGEEEHHHHGGGGGGC
T ss_pred HHhCCeEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeccccccCCCcceEEEEeeCCCHHHHhhHHHHhhhhhhc
Confidence 7899999999999998888887777777765 33221 11111111 66799
Q ss_pred cEEEEEcCcc
Q 038651 133 DAYIFVESIF 142 (324)
Q Consensus 133 Dlvl~lG~~~ 142 (324)
|++|+||+.-
T Consensus 100 Dv~lVIGAND 109 (180)
T 1pno_A 100 DVAFVIGAND 109 (180)
T ss_dssp SEEEEESCCG
T ss_pred CEEEEecccc
Confidence 9999999864
No 51
>1d4o_A NADP(H) transhydrogenase; nucleotide-binding fold, protein-NADP(H) complex, inverted binding of NADP(H), oxidoreductase; HET: NAP; 1.21A {Bos taurus} SCOP: c.31.1.4
Probab=87.65 E-value=0.25 Score=41.40 Aligned_cols=59 Identities=19% Similarity=0.160 Sum_probs=42.5
Q ss_pred hhcCCCcEEEECCCCCccchHHHHHHHHHHh---CCcEE--ecCCCCCc--------------------------cccCC
Q 038651 84 LLKAVKPAMIGGPKLSVSKATIAFVELADAC---GYAFA--VMPSAKGM--------------------------IVEFA 132 (324)
Q Consensus 84 L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l---~~Pv~--tt~~gkg~--------------------------~l~~a 132 (324)
|..|++-+|+-|+|..-+++.-.+.+|++.| |+-|- --+-+..+ -+.+.
T Consensus 19 l~~A~~ViIvPGYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHPVAGRMPGhMNVLLAEA~VPYd~v~EMdeIN~df~~t 98 (184)
T 1d4o_A 19 IREANSIIITPGYGLCAAKAQYPIADLVKMLSEQGKKVRFGIHPVAGRMPGQLNVLLAEAGVPYDIVLEMDEINHDFPDT 98 (184)
T ss_dssp HHHCSEEEEEECHHHHHTTTHHHHHHHHHHHHHTTCEEEEEECTTCSSSTTHHHHHHHHHTCCGGGEEEHHHHGGGGGGC
T ss_pred HHhCCeEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeccccccCCCcceEEEEEecCCHHHHHhHHHHhhhhhhc
Confidence 7889999999999998888887777777765 33221 11111111 66799
Q ss_pred cEEEEEcCcc
Q 038651 133 DAYIFVESIF 142 (324)
Q Consensus 133 Dlvl~lG~~~ 142 (324)
|++|+||+.-
T Consensus 99 Dv~lVIGAND 108 (184)
T 1d4o_A 99 DLVLVIGAND 108 (184)
T ss_dssp SEEEEESCSG
T ss_pred CEEEEecCCc
Confidence 9999999865
No 52
>2fsv_C NAD(P) transhydrogenase subunit beta; NAD(P) transhydrogenase subunits, oxidoreductas; HET: NAD NAP; 2.30A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1e3t_A* 1hzz_C* 1nm5_C* 1u28_C* 1u2d_C* 1u2g_C* 2fr8_C* 2frd_C*
Probab=87.01 E-value=0.26 Score=42.07 Aligned_cols=59 Identities=25% Similarity=0.308 Sum_probs=42.8
Q ss_pred hhcCCCcEEEECCCCCccchHHHHHHHHHHh---CCcEE--ecCCCCCc--------------------------cccCC
Q 038651 84 LLKAVKPAMIGGPKLSVSKATIAFVELADAC---GYAFA--VMPSAKGM--------------------------IVEFA 132 (324)
Q Consensus 84 L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l---~~Pv~--tt~~gkg~--------------------------~l~~a 132 (324)
|..|++-+|+-|+|..-++++-.+.+|+++| |+-|- --+-+..+ -+.+.
T Consensus 43 l~~A~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~faIHPVAGRMPGhMNVLLAEA~VPYd~v~EMdeIN~df~~t 122 (203)
T 2fsv_C 43 MKNASKVIIVPGYGMAVAQAQHALREMADVLKKEGVEVSYAIHPVAGRMPGHMNVLLAEANVPYDEVFELEEINSSFQTA 122 (203)
T ss_dssp HHHCSEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEEECTTCSSSTTHHHHHHHHTTCCGGGEEEHHHHGGGSTTC
T ss_pred HHhCCcEEEEcCchHhHHHHHHHHHHHHHHHHHcCCeEEEEecccccCCCCCccEEEEEecCCHHHHhhHHHHhhhhhhc
Confidence 8899999999999998888887777777765 33221 11211111 66799
Q ss_pred cEEEEEcCcc
Q 038651 133 DAYIFVESIF 142 (324)
Q Consensus 133 Dlvl~lG~~~ 142 (324)
|++|+||+.-
T Consensus 123 Dv~lVIGAND 132 (203)
T 2fsv_C 123 DVAFVIGAND 132 (203)
T ss_dssp SEEEEESCCG
T ss_pred CEEEEecccc
Confidence 9999999864
No 53
>1djl_A Transhydrogenase DIII; rossmann fold dinucleotide binding fold reverse binding of N oxidoreductase; HET: NAP; 2.00A {Homo sapiens} SCOP: c.31.1.4 PDB: 1pt9_A* 1u31_A*
Probab=86.94 E-value=0.25 Score=42.29 Aligned_cols=59 Identities=19% Similarity=0.160 Sum_probs=42.9
Q ss_pred hhcCCCcEEEECCCCCccchHHHHHHHHHHh---CCcEE--ecCCCCCc--------------------------cccCC
Q 038651 84 LLKAVKPAMIGGPKLSVSKATIAFVELADAC---GYAFA--VMPSAKGM--------------------------IVEFA 132 (324)
Q Consensus 84 L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l---~~Pv~--tt~~gkg~--------------------------~l~~a 132 (324)
|..|++-+|+-|+|..-++|+-.+.+|+++| |+-|- --+-+..+ -+.+.
T Consensus 42 l~~A~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~faIHPVAGRMPGhMNVLLAEA~VPYd~v~EMdeIN~df~~t 121 (207)
T 1djl_A 42 IREANSIIITPGYGLCAAKAQYPIADLVKMLTEQGKKVRFGIHPVAGRMPGQLNVLLAEAGVPYDIVLEMDEINHDFPDT 121 (207)
T ss_dssp HHHCSEEEEEECHHHHHHTCHHHHHHHHHHHHHTTCEEEEEECTTCSSSTTHHHHHHHHTTCCGGGEEEHHHHGGGGGGC
T ss_pred HHhCCeEEEECCchHHHHHHhHHHHHHHHHHHHCCCeEEEEeCccCCCCCCCCcEEEEEeCCCHHHHhhHHHHhhhhhhc
Confidence 8899999999999998888887777777765 33221 11211111 66799
Q ss_pred cEEEEEcCcc
Q 038651 133 DAYIFVESIF 142 (324)
Q Consensus 133 Dlvl~lG~~~ 142 (324)
|++|+||+.-
T Consensus 122 Dv~lVIGAND 131 (207)
T 1djl_A 122 DLVLVIGAND 131 (207)
T ss_dssp SEEEEESCCG
T ss_pred CEEEEecccc
Confidence 9999999865
No 54
>2bru_C NAD(P) transhydrogenase subunit beta; paramagnetic transhydrogenase, inner membrane, membrane, oxidoreductase, transmembrane; HET: NAD NAP; NMR {Escherichia coli}
Probab=82.82 E-value=0.48 Score=39.75 Aligned_cols=59 Identities=14% Similarity=0.117 Sum_probs=42.1
Q ss_pred hhcCCCcEEEECCCCCccchHHHHHHHHHHh---CCcE-------EecCCCC--------Cc-------------cccCC
Q 038651 84 LLKAVKPAMIGGPKLSVSKATIAFVELADAC---GYAF-------AVMPSAK--------GM-------------IVEFA 132 (324)
Q Consensus 84 L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l---~~Pv-------~tt~~gk--------g~-------------~l~~a 132 (324)
|..|++-+|+-|+|..-+++.-.+.+|++.| |+-| +-...|. ++ -+.+.
T Consensus 27 l~~A~~ViIVPGYGmAVAqAQ~~v~el~~~L~~~G~~V~faIHPVAGRMPGhMNVLLAEA~VPYd~v~EMdeIN~df~~t 106 (186)
T 2bru_C 27 LKNSHSVIITPGYGMAVAQAQYPVAEITEKLRARGINVRFGIHPVAGRLPGHMNVLLAEAKVPYDIVLEMDEINDDFADT 106 (186)
T ss_dssp HHHCSEEEEECSBHHHHTTTHHHHHHHHHHHHHHCCEEEEEECSSSSSSSSTHHHHHHHHTCCTTTEEESCCCHHHHHHC
T ss_pred HHhCCeEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeccccccCCCcceEEEEecCCCHHHHhhHHHHhcccccC
Confidence 7899999999999998888887777777665 4322 2222111 00 55689
Q ss_pred cEEEEEcCcc
Q 038651 133 DAYIFVESIF 142 (324)
Q Consensus 133 Dlvl~lG~~~ 142 (324)
|++|+||+.-
T Consensus 107 Dv~lVIGAND 116 (186)
T 2bru_C 107 DTVLVIGAND 116 (186)
T ss_dssp SEEEECBCGG
T ss_pred CEEEEecccc
Confidence 9999999865
No 55
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=82.73 E-value=0.94 Score=34.83 Aligned_cols=55 Identities=9% Similarity=0.024 Sum_probs=41.4
Q ss_pred CCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc---cccCCcEEEEEcCccC
Q 038651 88 VKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM---IVEFADAYIFVESIFN 143 (324)
Q Consensus 88 krPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~---~l~~aDlvl~lG~~~~ 143 (324)
+|-++++|.|...|-..+.+.+.++..|+++-....+-+- .+.++|++| +|..+.
T Consensus 4 kkIll~Cg~G~sTS~l~~k~~~~~~~~gi~~~i~a~~~~~~~~~~~~~Dvil-~~pqv~ 61 (106)
T 1e2b_A 4 KHIYLFSSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLAGEKGQNADVVL-LGPQIA 61 (106)
T ss_dssp EEEEEECSSSTTTHHHHHHHHHHHHHSCCSEEEEEECSSSTTHHHHHCSEEE-ECTTSG
T ss_pred cEEEEECCCchhHHHHHHHHHHHHHHCCCCeEEEEecHHHHHhhccCCCEEE-Eccchh
Confidence 5789999999988877889999999999997543322221 557899665 777764
No 56
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=80.58 E-value=2.2 Score=33.01 Aligned_cols=55 Identities=11% Similarity=0.074 Sum_probs=38.2
Q ss_pred CCcEEEECCCCCccc-hHHHHHHHHHHhCCcE-EecCCCCCc--cccCCcEEEEEcCccC
Q 038651 88 VKPAMIGGPKLSVSK-ATIAFVELADACGYAF-AVMPSAKGM--IVEFADAYIFVESIFN 143 (324)
Q Consensus 88 krPvIl~G~g~~~~~-a~~~l~~lae~l~~Pv-~tt~~gkg~--~l~~aDlvl~lG~~~~ 143 (324)
+|-++++|.|...+. ....+++.++..|+.+ +.+..-..+ .++++|+|| .+..+.
T Consensus 22 kkIlvvC~sG~gTS~ll~~kl~~~~~~~gi~~~V~~~~~~~~~~~~~~~DlIi-st~~l~ 80 (113)
T 1tvm_A 22 RKIIVACGGAVATSTMAAEEIKELCQSHNIPVELIQCRVNEIETYMDGVHLIC-TTARVD 80 (113)
T ss_dssp EEEEEESCSCSSHHHHHHHHHHHHHHHTTCCEEEEEECTTTTTTSTTSCSEEE-ESSCCC
T ss_pred cEEEEECCCCHHHHHHHHHHHHHHHHHcCCeEEEEEecHHHHhhccCCCCEEE-ECCccc
Confidence 467899999998777 4789999999999985 222222222 457899665 445553
No 57
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=79.68 E-value=1.7 Score=33.58 Aligned_cols=55 Identities=16% Similarity=0.086 Sum_probs=40.6
Q ss_pred CCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc---cccCCcEEEEEcCcc
Q 038651 87 AVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM---IVEFADAYIFVESIF 142 (324)
Q Consensus 87 AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~---~l~~aDlvl~lG~~~ 142 (324)
-.|-++++++|...+=....+++.|++.|+++-....+-+- .+++.|+||+ |...
T Consensus 6 ~mkIlL~C~aGmSTsllv~km~~~a~~~gi~v~i~a~~~~~~~~~~~~~DvvLL-gPQV 63 (108)
T 3nbm_A 6 ELKVLVLCAGSGTSAQLANAINEGANLTEVRVIANSGAYGAHYDIMGVYDLIIL-APQV 63 (108)
T ss_dssp CEEEEEEESSSSHHHHHHHHHHHHHHHHTCSEEEEEEETTSCTTTGGGCSEEEE-CGGG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEcchHHHHhhccCCCEEEE-ChHH
Confidence 34678999999876667789999999999998763322221 6688998764 6554
No 58
>3glr_A NAD-dependent deacetylase sirtuin-3, mitochondria; NAD dependent deacetylase, sirtuin, substrate peptide comple hydrolase, metal-binding; HET: ALY; 1.80A {Homo sapiens} PDB: 3gls_A 3glt_A* 3glu_A 4hd8_A* 4fvt_A*
Probab=65.91 E-value=3.7 Score=37.24 Aligned_cols=39 Identities=10% Similarity=0.133 Sum_probs=26.3
Q ss_pred cccCCcEEEEEcCccCCcccccccccCC-CC-EEEEcCCcc
Q 038651 128 IVEFADAYIFVESIFNDYSSVGYSLLLN-KK-AILMQPDRI 166 (324)
Q Consensus 128 ~l~~aDlvl~lG~~~~~~~t~~~~~~~~-~~-iI~id~d~~ 166 (324)
.+++||++|++||++.-+.........+ .. +|.|+.++.
T Consensus 194 ~~~~aDlllviGTSl~V~Paa~l~~~~~~~~~~v~IN~~~~ 234 (285)
T 3glr_A 194 DFPMADLLLILGTSLEVEPFASLTEAVRSSVPRLLINRDLV 234 (285)
T ss_dssp HHHHCSEEEEESCCCCEETTGGGGGSSCTTSCEEEEESSCC
T ss_pred HHhcCCEEEEeCCCCccccHHHHHHHHhCCCcEEEECCCCc
Confidence 4568999999999996554333322222 33 888998876
No 59
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=63.70 E-value=9.7 Score=28.93 Aligned_cols=54 Identities=11% Similarity=0.113 Sum_probs=38.3
Q ss_pred CcEEEECCCCCccchHHHHHHHHHHhCCcEEe-cCCCCCc--cccCCcEEEEEcCccC
Q 038651 89 KPAMIGGPKLSVSKATIAFVELADACGYAFAV-MPSAKGM--IVEFADAYIFVESIFN 143 (324)
Q Consensus 89 rPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~t-t~~gkg~--~l~~aDlvl~lG~~~~ 143 (324)
|-++++|.|...+=..+.+++.++..|+++-. +..-..+ .+.++|+| +++..+.
T Consensus 6 kIlvvC~~G~~TSll~~kl~~~~~~~gi~~~i~~~~~~~~~~~~~~~D~I-i~t~~l~ 62 (109)
T 2l2q_A 6 NILLVCGAGMSTSMLVQRIEKYAKSKNINATIEAIAETRLSEVVDRFDVV-LLAPQSR 62 (109)
T ss_dssp EEEEESSSSCSSCHHHHHHHHHHHHHTCSEEEEEECSTTHHHHTTTCSEE-EECSCCS
T ss_pred EEEEECCChHhHHHHHHHHHHHHHHCCCCeEEEEecHHHHHhhcCCCCEE-EECCccH
Confidence 46889999998886678999999999998532 2222233 56789966 4566663
No 60
>1o97_D Electron transferring flavoprotein alpha-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 c.31.1.2 PDB: 1o95_D* 1o96_B* 1o94_D* 3clu_D* 3clt_D* 3clr_D* 3cls_D*
Probab=62.70 E-value=15 Score=33.67 Aligned_cols=79 Identities=18% Similarity=0.107 Sum_probs=51.9
Q ss_pred hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecC-------CCCCc-------cccCCcEEEEEcCccCCccccc
Q 038651 84 LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMP-------SAKGM-------IVEFADAYIFVESIFNDYSSVG 149 (324)
Q Consensus 84 L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~-------~gkg~-------~l~~aDlvl~lG~~~~~~~t~~ 149 (324)
|.+|+ -++-.|.|+...+..+.+++||++||.-|-.|- ..+.. .+.-|+|-|++|-+=.-....+
T Consensus 199 l~~A~-ivVsgGRG~~~~e~f~~~~~LA~~Lga~vgaSR~~vd~Gw~~~~~QVGqTGk~V~P~~lYiA~GISGAiQHlaG 277 (320)
T 1o97_D 199 ITTVD-FIMSIGRGIGEETNVEQFRELADEAGATLCCSRPIADAGWLPKSRQVGQSGKVVGSCKLYVAMGISGSIQHMAG 277 (320)
T ss_dssp CSCSS-EEEEECGGGCSGGGHHHHHHHHHHHTCEEEECHHHHHTTSSCGGGBBSTTSBCCTTCSEEEEESCCCCHHHHHH
T ss_pred cCCCC-EEEEcCCccCChHHHHHHHHHHHHhCCceeecHHHHhCCCCChhhEeecCceEecccceEEEEeccCcHHHHhh
Confidence 44443 344456666666678999999999999888772 22211 6677899999996642222222
Q ss_pred ccccCCCC-EEEEcCCcc
Q 038651 150 YSLLLNKK-AILMQPDRI 166 (324)
Q Consensus 150 ~~~~~~~~-iI~id~d~~ 166 (324)
. ...+ ||-|+.|+.
T Consensus 278 m---~~s~~IVAIN~D~~ 292 (320)
T 1o97_D 278 M---KHVPTIIAVNTDPG 292 (320)
T ss_dssp H---TTCSEEEEECSCTT
T ss_pred c---ccCCEEEEEeCCCC
Confidence 2 2345 999999975
No 61
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=58.85 E-value=12 Score=34.91 Aligned_cols=55 Identities=15% Similarity=0.106 Sum_probs=38.9
Q ss_pred CCCcEEEECCCCCcc--chHHHHHHHHHHhCCcEEecCCCCC---c--------c--ccCCcEEEEEcCc
Q 038651 87 AVKPAMIGGPKLSVS--KATIAFVELADACGYAFAVMPSAKG---M--------I--VEFADAYIFVESI 141 (324)
Q Consensus 87 AkrPvIl~G~g~~~~--~a~~~l~~lae~l~~Pv~tt~~gkg---~--------~--l~~aDlvl~lG~~ 141 (324)
.+|++|+.|.++... +..+.+.+..+..|+.+..-..... . . -.++|+||+||..
T Consensus 33 ~~~~livtd~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGG 102 (387)
T 3bfj_A 33 GKKALLVTDKGLRAIKDGAVDKTLHYLREAGIEVAIFDGVEPNPKDTNVRDGLAVFRREQCDIIVTVGGG 102 (387)
T ss_dssp CSEEEEECCTTTC--CCSSHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCCEEEEEESH
T ss_pred CCEEEEEECcchhhccchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 479999999988776 6788899888888988754222222 1 2 2578999999863
No 62
>2hjh_A NAD-dependent histone deacetylase SIR2; protein, sirtuin, acetyl-ADP-ribose, nicotinamide, hydrolase; HET: XYQ; 1.85A {Saccharomyces cerevisiae}
Probab=56.84 E-value=5.9 Score=37.00 Aligned_cols=41 Identities=10% Similarity=0.062 Sum_probs=27.6
Q ss_pred cccCCcEEEEEcCccCCcccccccccCC-CC-EEEEcCCcccc
Q 038651 128 IVEFADAYIFVESIFNDYSSVGYSLLLN-KK-AILMQPDRIVV 168 (324)
Q Consensus 128 ~l~~aDlvl~lG~~~~~~~t~~~~~~~~-~~-iI~id~d~~~i 168 (324)
.+++||++|+|||++.-+....+....+ .. +|.|+.++...
T Consensus 252 ~~~~aDllLviGTSL~V~Paa~lv~~~~~~~~~v~IN~~~t~~ 294 (354)
T 2hjh_A 252 DILECDLLICIGTSLKVAPVSEIVNMVPSHVPQVLINRDPVKH 294 (354)
T ss_dssp HTTTCCEEEEESCCCCEETGGGHHHHSCTTSCEEEEESSCCTT
T ss_pred HHhhCCEEEEECcCCCchhHHHHHHHHhcCCcEEEEcCCCCCC
Confidence 5679999999999996544333222222 33 88898887653
No 63
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=55.49 E-value=29 Score=33.35 Aligned_cols=64 Identities=13% Similarity=0.073 Sum_probs=43.5
Q ss_pred ceEEE--EeCCcchHHHHHHHHHHhhcCCcchhhhhhhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCC
Q 038651 50 VGAYV--VTFIVGRLSIINAIAGAYSENFPAATITALLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAK 125 (324)
Q Consensus 50 ~gv~~--~t~GpG~~N~~tgla~A~~d~~Pvl~It~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gk 125 (324)
+.+++ ...|.|=|.++..|+..+.. +-+|++++. ....+..+.+++..+++..++|++....+.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~-----------~G~kVllv~-~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~ 165 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQK-----------RGYKVGVVC-SDTWRPGAYHQLRQLLDRYHIEVFGNPQEK 165 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT-----------TTCCEEEEE-CCCSSTHHHHHHHHHHGGGTCEEECCTTCC
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHH-----------CCCeEEEEe-CCCcchhHHHHHHHHHHhcCCcEEecCCCC
Confidence 44443 34566667777788776543 234555544 445677899999999999999999765543
No 64
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=55.04 E-value=4.3 Score=31.07 Aligned_cols=54 Identities=13% Similarity=0.038 Sum_probs=36.8
Q ss_pred CCcEEEECCCCCccchHH-HHHHHHHHhCCc-E-EecCCCCCc--cccCCcEEEEEcCcc
Q 038651 88 VKPAMIGGPKLSVSKATI-AFVELADACGYA-F-AVMPSAKGM--IVEFADAYIFVESIF 142 (324)
Q Consensus 88 krPvIl~G~g~~~~~a~~-~l~~lae~l~~P-v-~tt~~gkg~--~l~~aDlvl~lG~~~ 142 (324)
+|-++++|.|...+.... .+++.+++.|++ + +....-..+ .+.++|+||. +..+
T Consensus 19 ~kIlvvC~sG~gTS~m~~~kl~~~~~~~gi~~~~i~~~~~~~~~~~~~~~DlIi~-t~~l 77 (110)
T 3czc_A 19 VKVLTACGNGMGSSMVIKMKVENALRQLGVSDIESASCSVGEAKGLASNYDIVVA-SNHL 77 (110)
T ss_dssp EEEEEECCCCHHHHHHHHHHHHHHHHHTTCCCEEEEEECHHHHHHHGGGCSEEEE-ETTT
T ss_pred cEEEEECCCcHHHHHHHHHHHHHHHHHcCCCeEEEEEeeHHHHhhccCCCcEEEE-CCch
Confidence 567899999987766655 899999999998 4 222221222 4568996664 4555
No 65
>3riy_A NAD-dependent deacetylase sirtuin-5; desuccinylase, demalonylase, posttranslational modification, binding domain, rossmann fold domain; HET: SLL NAD; 1.55A {Homo sapiens} SCOP: c.31.1.5 PDB: 3rig_A* 4f4u_A* 4f56_A* 4hda_A* 2b4y_A* 2nyr_A* 4g1c_A*
Probab=54.34 E-value=4 Score=36.68 Aligned_cols=42 Identities=7% Similarity=0.037 Sum_probs=28.0
Q ss_pred cccCCcEEEEEcCccCCcccccccc--cCCCC-EEEEcCCccccc
Q 038651 128 IVEFADAYIFVESIFNDYSSVGYSL--LLNKK-AILMQPDRIVVA 169 (324)
Q Consensus 128 ~l~~aDlvl~lG~~~~~~~t~~~~~--~~~~~-iI~id~d~~~i~ 169 (324)
.+++||++|++||++.-+....+.. ..... +|.|+.++....
T Consensus 209 ~~~~aDl~lviGTSl~V~Paa~l~~~a~~~g~~~v~IN~~~t~~d 253 (273)
T 3riy_A 209 ELAHCDLCLVVGTSSVVYPAAMFAPQVAARGVPVAEFNTETTPAT 253 (273)
T ss_dssp HHHHCSEEEEESCCSCEETGGGHHHHHHHTTCCEEEEESSCCTTG
T ss_pred HHhcCCEEEEEeeCCcchhHHHhHHHHHHCCCEEEEECCCCCCCC
Confidence 5678999999999996544322211 11233 889998887654
No 66
>1q1a_A HST2 protein; ternary complex, histone deacetylase, 2'-O-ADP ribose,, gene regulation; HET: ALY OAD; 1.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5 PDB: 1szd_A* 1szc_A* 2od7_A* 2od9_A* 2qqf_A* 2qqg_A* 1q17_A* 2od2_A*
Probab=53.96 E-value=6.5 Score=35.54 Aligned_cols=39 Identities=13% Similarity=0.065 Sum_probs=25.4
Q ss_pred ccCCcEEEEEcCccCCcccccccccCC-CC-EEEEcCCccc
Q 038651 129 VEFADAYIFVESIFNDYSSVGYSLLLN-KK-AILMQPDRIV 167 (324)
Q Consensus 129 l~~aDlvl~lG~~~~~~~t~~~~~~~~-~~-iI~id~d~~~ 167 (324)
+++||++|++||++.-+....+....+ .. +|.|+.++..
T Consensus 209 ~~~~DlllviGTSl~V~Pa~~l~~~~~~~~~~v~IN~~~~~ 249 (289)
T 1q1a_A 209 HPQQPLVIVVGTSLAVYPFASLPEEIPRKVKRVLCNLETVG 249 (289)
T ss_dssp -CCCCEEEEESCCCCEETTTHHHHHSCTTSEEEEESSSCCT
T ss_pred hccCCEEEEEccCCChhhHHHHHHHHhcCCCEEEEECCCcc
Confidence 568999999999996543322222222 33 8889988763
No 67
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
Probab=53.33 E-value=7.4 Score=35.86 Aligned_cols=41 Identities=5% Similarity=-0.045 Sum_probs=27.2
Q ss_pred cccCCcEEEEEcCccCCcccccccccCC-CC-EEEEcCCcccc
Q 038651 128 IVEFADAYIFVESIFNDYSSVGYSLLLN-KK-AILMQPDRIVV 168 (324)
Q Consensus 128 ~l~~aDlvl~lG~~~~~~~t~~~~~~~~-~~-iI~id~d~~~i 168 (324)
.+++||++|++||++.-+....+....+ .. +|.|+.++...
T Consensus 217 ~~~~aDlllviGTSl~V~P~a~l~~~~~~~~~~v~IN~~~t~~ 259 (323)
T 1j8f_A 217 DFLKVDLLLVMGTSLQVQPFASLISKAPLSTPRLLINKEKAGQ 259 (323)
T ss_dssp GGGSCSEEEEESSCSCSHHHHHHHTTSCTTCCEEEEESSCCCC
T ss_pred HHhCCCEEEEEeeCcccHHHHHHHHHHHcCCcEEEEeCCCCCC
Confidence 6779999999999996544333222223 23 67788887654
No 68
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: c.31.1.5
Probab=53.03 E-value=8.6 Score=36.04 Aligned_cols=39 Identities=13% Similarity=0.065 Sum_probs=25.2
Q ss_pred ccCCcEEEEEcCccCCcccccccccCC-CC-EEEEcCCccc
Q 038651 129 VEFADAYIFVESIFNDYSSVGYSLLLN-KK-AILMQPDRIV 167 (324)
Q Consensus 129 l~~aDlvl~lG~~~~~~~t~~~~~~~~-~~-iI~id~d~~~ 167 (324)
+++||++|+|||++.-+....+....+ .. +|.|+.++..
T Consensus 217 ~~~aDllLviGTSl~V~Paa~l~~~~~~g~~~v~IN~~~t~ 257 (361)
T 1q14_A 217 HPQQPLVIVVGTSLAVYPFASLPEEIPRKVKRVLCNLETVG 257 (361)
T ss_dssp --CCCEEEEESCCCCSTTGGGHHHHSCTTSEEEEESSSCCH
T ss_pred hccCCEEEEECCCCCchhHHHHHHHHhcCCeEEEEeCCCcc
Confidence 458999999999996554333322222 33 8889988763
No 69
>1s5p_A NAD-dependent deacetylase; protein deacetylase, SIR2 homologue, hydrolase; HET: ALY; 1.96A {Escherichia coli} SCOP: c.31.1.5
Probab=52.30 E-value=3.4 Score=36.21 Aligned_cols=42 Identities=14% Similarity=0.235 Sum_probs=26.6
Q ss_pred cccCCcEEEEEcCccCCcccccccccC--CCC-EEEEcCCccccc
Q 038651 128 IVEFADAYIFVESIFNDYSSVGYSLLL--NKK-AILMQPDRIVVA 169 (324)
Q Consensus 128 ~l~~aDlvl~lG~~~~~~~t~~~~~~~--~~~-iI~id~d~~~i~ 169 (324)
.+++||++|++||++.-+....+.... ... +|.|+.++....
T Consensus 164 ~~~~adl~lviGTSl~V~Pa~~l~~~a~~~g~~~i~iN~~~t~~~ 208 (235)
T 1s5p_A 164 ALSMADIFIAIGTSGHVYPAAGFVHEAKLHGAHTVELNLEPSQVG 208 (235)
T ss_dssp HHHHCSEEEEESCCTTEETGGGHHHHHHHTTCEEEEEESSSCC--
T ss_pred HHhcCCEEEEECcCCchhhHHHHHHHHHHcCCeEEEEECCCCCCC
Confidence 456789999999999654433222111 233 889998887654
No 70
>2kyr_A Fructose-like phosphotransferase enzyme IIB compo; ALP protein, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=51.18 E-value=21 Score=27.54 Aligned_cols=68 Identities=16% Similarity=0.131 Sum_probs=45.0
Q ss_pred CCCCCc-cchHHHHHHHHHHhCCcEEe-cCCCCCc-------cccCCcEEEEEcCccCCcccccccccCCCCEEEEcCCc
Q 038651 95 GPKLSV-SKATIAFVELADACGYAFAV-MPSAKGM-------IVEFADAYIFVESIFNDYSSVGYSLLLNKKAILMQPDR 165 (324)
Q Consensus 95 G~g~~~-~~a~~~l~~lae~l~~Pv~t-t~~gkg~-------~l~~aDlvl~lG~~~~~~~t~~~~~~~~~~iI~id~d~ 165 (324)
..|+.. +=+.+.|++-|+++|+.+-. |..+-|+ -+++||+||+.+..--+ .-..|-.+++++++++.
T Consensus 15 ptGiAHTyMAAeaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~I~~Ad~VIiA~d~~v~----~~~RF~GK~v~~~~v~~ 90 (111)
T 2kyr_A 15 PMGLAHTFMAAQALEEAAVEAGYEVKIETQGADGIQNRLTAQDIAEATIIIHSVAVTPE----DNERFESRDVYEITLQD 90 (111)
T ss_dssp SSCHHHHHHHHHHHHHHHHHTSSEEEEEEEETTEEESCCCHHHHHHCSEEEEEESSCCT----TGGGGTTSCEEEEETTH
T ss_pred CCcHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcCCCCCHHHHHhCCEEEEEeCCCcC----chhhcCCCeEEEeCHHH
Confidence 444433 23678999999999999876 5445565 67899999999865431 01122233488888775
Q ss_pred c
Q 038651 166 I 166 (324)
Q Consensus 166 ~ 166 (324)
.
T Consensus 91 a 91 (111)
T 2kyr_A 91 A 91 (111)
T ss_dssp H
T ss_pred H
Confidence 4
No 71
>4iao_A NAD-dependent histone deacetylase SIR2; protein complex, deacetylase, nucleus, hydrolase-trans complex; HET: APR; 2.90A {Saccharomyces cerevisiae}
Probab=49.67 E-value=8.2 Score=37.67 Aligned_cols=40 Identities=10% Similarity=0.053 Sum_probs=27.1
Q ss_pred cccCCcEEEEEcCccCCcccccccc-cCCCC-EEEEcCCccc
Q 038651 128 IVEFADAYIFVESIFNDYSSVGYSL-LLNKK-AILMQPDRIV 167 (324)
Q Consensus 128 ~l~~aDlvl~lG~~~~~~~t~~~~~-~~~~~-iI~id~d~~~ 167 (324)
.+++||++|++||++.-+....+-. ..... +|.|+.++..
T Consensus 390 ~~~~aDLlLVIGTSL~VyPaA~Lv~~a~~~~p~ViIN~ept~ 431 (492)
T 4iao_A 390 DILECDLLICIGTSLKVAPVSEIVNMVPSHVPQVLINRDPVK 431 (492)
T ss_dssp HTTTCSEEEEESCCCCEETGGGHHHHSBTTSCEEEEESSCCT
T ss_pred HHhhCCEEEEeccCCCccchhhHHHHHhcCCcEEEEcCCCCC
Confidence 6679999999999996544333211 22233 8889888864
No 72
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=46.88 E-value=10 Score=35.43 Aligned_cols=55 Identities=18% Similarity=0.167 Sum_probs=38.3
Q ss_pred CCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCC---c--------c--ccCCcEEEEEcCc
Q 038651 87 AVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKG---M--------I--VEFADAYIFVESI 141 (324)
Q Consensus 87 AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg---~--------~--l~~aDlvl~lG~~ 141 (324)
.+|++|+.|.++...+..+.+.+..+..|+.+..-..... . . -.++|+||+||..
T Consensus 31 ~~~~livtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGG 98 (386)
T 1rrm_A 31 YQKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVPNPTITVVKEGLGVFQNSGADYLIAIGGG 98 (386)
T ss_dssp CCEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEECBCCSSCBHHHHHHHHHHHHHHTCSEEEEEESH
T ss_pred CCEEEEEECcchhhchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEeCCh
Confidence 5788888888776556788888888888887653222221 1 2 2478999999863
No 73
>3pki_A NAD-dependent deacetylase sirtuin-6; ADP ribose, structural genomics, structural genomics consortium, SGC, hydrolase; HET: AR6; 2.04A {Homo sapiens} PDB: 3pkj_A*
Probab=46.46 E-value=6.1 Score=36.97 Aligned_cols=42 Identities=12% Similarity=-0.013 Sum_probs=28.2
Q ss_pred cccCCcEEEEEcCccCCccccccccc--CCCC-EEEEcCCccccc
Q 038651 128 IVEFADAYIFVESIFNDYSSVGYSLL--LNKK-AILMQPDRIVVA 169 (324)
Q Consensus 128 ~l~~aDlvl~lG~~~~~~~t~~~~~~--~~~~-iI~id~d~~~i~ 169 (324)
.+++||++|+|||++.-+....+-.. .... +|.|+.++....
T Consensus 203 ~~~~aDllLViGTSL~V~Paa~Lp~~a~~~G~~vviIN~~pT~~d 247 (355)
T 3pki_A 203 ASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHD 247 (355)
T ss_dssp HHHHCSEEEEESCCCCSTTGGGTTHHHHHTTCEEEEECSSCCTTG
T ss_pred HHhcCCEEEEEeeCCCchhhhhhHHHHHhcCCEEEEECCCCCCCC
Confidence 56789999999999965543333211 1233 888998876554
No 74
>3k35_A NAD-dependent deacetylase sirtuin-6; rossmann fold, Zn-binding domain, structural genomics, struc genomics consortium, SGC, ADP-ribosylation; HET: APR; 2.00A {Homo sapiens}
Probab=46.06 E-value=5.7 Score=36.63 Aligned_cols=42 Identities=12% Similarity=-0.013 Sum_probs=28.1
Q ss_pred cccCCcEEEEEcCccCCccccccccc--CCCC-EEEEcCCccccc
Q 038651 128 IVEFADAYIFVESIFNDYSSVGYSLL--LNKK-AILMQPDRIVVA 169 (324)
Q Consensus 128 ~l~~aDlvl~lG~~~~~~~t~~~~~~--~~~~-iI~id~d~~~i~ 169 (324)
.+++||++|++||++.-+....+-.. .... +|.|+.++....
T Consensus 203 ~~~~aDllLViGTSL~V~Paa~l~~~a~~~G~~vviIN~~~t~~d 247 (318)
T 3k35_A 203 ASRNADLSITLGTSLQIRPSGNLPLATKRRGGRLVIVNLQPTKHD 247 (318)
T ss_dssp HHHTCSEEEEESCCCCSTTGGGHHHHHHHTTCEEEEECSSCCTTG
T ss_pred HHhcCCEEEEEccCCCchhhhhhHHHHHhcCCEEEEECCCCCCCC
Confidence 56799999999999965543332111 1233 888998876554
No 75
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=45.47 E-value=60 Score=29.05 Aligned_cols=56 Identities=16% Similarity=0.074 Sum_probs=40.5
Q ss_pred EeCCcchHHHHHHHHHHhhcCCcchhhhhhhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecC
Q 038651 55 VTFIVGRLSIINAIAGAYSENFPAATITALLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMP 122 (324)
Q Consensus 55 ~t~GpG~~N~~tgla~A~~d~~Pvl~It~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~ 122 (324)
...|.|=|.++..++..+. ...+-+++++....++.+.+++..++++.|+|++...
T Consensus 105 G~~G~GKTT~~~~la~~~~------------~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~ 160 (297)
T 1j8m_F 105 GVQGTGKTTTAGKLAYFYK------------KKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEP 160 (297)
T ss_dssp CSSCSSTTHHHHHHHHHHH------------HTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCT
T ss_pred CCCCCCHHHHHHHHHHHHH------------HCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecC
Confidence 4556666667777766543 2345566777777777888889999999999998753
No 76
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=44.62 E-value=43 Score=31.99 Aligned_cols=59 Identities=14% Similarity=0.106 Sum_probs=40.8
Q ss_pred EeCCcchHHHHHHHHHHhhcCCcchhhhhhhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCC
Q 038651 55 VTFIVGRLSIINAIAGAYSENFPAATITALLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAK 125 (324)
Q Consensus 55 ~t~GpG~~N~~tgla~A~~d~~Pvl~It~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gk 125 (324)
...|.|=|.++..|+..+.. ..+++ ++++....+..+.+++..+++..++|++....+.
T Consensus 104 G~~GsGKTTt~~kLA~~l~~-----------~G~kV-llv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~ 162 (433)
T 3kl4_A 104 GVQGSGKTTTAGKLAYFYKK-----------RGYKV-GLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQ 162 (433)
T ss_dssp CCTTSCHHHHHHHHHHHHHH-----------TTCCE-EEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCS
T ss_pred CCCCCCHHHHHHHHHHHHHH-----------cCCeE-EEEecCccchhHHHHHHHHHHhcCCceeeccccC
Confidence 34455667777777766542 23444 4445556677889999999999999999775544
No 77
>2r48_A Phosphotransferase system (PTS) mannose-specific iibca component; PTS system, fructose specific IIB PFAM02379, PSI-2, MCSG; 1.80A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=44.05 E-value=23 Score=27.10 Aligned_cols=59 Identities=20% Similarity=0.192 Sum_probs=41.5
Q ss_pred chHHHHHHHHHHhCCcEEe-cCCCCCc-------cccCCcEEEEEcCccCCcccccccccCCCCEEEEcCCc
Q 038651 102 KATIAFVELADACGYAFAV-MPSAKGM-------IVEFADAYIFVESIFNDYSSVGYSLLLNKKAILMQPDR 165 (324)
Q Consensus 102 ~a~~~l~~lae~l~~Pv~t-t~~gkg~-------~l~~aDlvl~lG~~~~~~~t~~~~~~~~~~iI~id~d~ 165 (324)
=+.+.|++-|+++|+.+-. |..+-|+ -+++||+||+.+..--+. ..|-.+++++++++.
T Consensus 20 mAaeaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~I~~Ad~VIiA~d~~v~~-----~RF~GK~v~~~~v~~ 86 (106)
T 2r48_A 20 MAAENLQKAADRLGVSIKVETQGGIGVENKLTEEEIREADAIIIAADRSVNK-----DRFIGKKLLSVGVQD 86 (106)
T ss_dssp HHHHHHHHHHHHHTCEEEEEEEETTEEESCCCHHHHHHCSEEEEEESSCCCC-----GGGTTSBEEEECHHH
T ss_pred HHHHHHHHHHHHCCCeEEEEecCCCCccCCCCHHHHHhCCEEEEEeCCccCH-----hHcCCCeEEEeCHHH
Confidence 3678999999999999875 5444565 678999999999655332 122223388887664
No 78
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=43.57 E-value=7.8 Score=36.37 Aligned_cols=55 Identities=15% Similarity=0.048 Sum_probs=38.8
Q ss_pred CCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCC---CCc----------cccCCcEEEEEcCc
Q 038651 87 AVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSA---KGM----------IVEFADAYIFVESI 141 (324)
Q Consensus 87 AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~g---kg~----------~l~~aDlvl~lG~~ 141 (324)
.+|++|+.|.++...+..+.+.+..+..|+.+..-... +.. .-.++|+||+||..
T Consensus 31 ~~~~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 98 (383)
T 3ox4_A 31 FKNALIVSDAFMNKSGVVKQVADLLKAQGINSAVYDGVMPNPTVTAVLEGLKILKDNNSDFVISLGGG 98 (383)
T ss_dssp CCEEEEEEEHHHHHTTHHHHHHHHHHTTTCEEEEEEEECSSCBHHHHHHHHHHHHHHTCSEEEEEESH
T ss_pred CCEEEEEECCchhhCchHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEeCCc
Confidence 57899999988766667788888888888887432111 111 22479999999964
No 79
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=43.38 E-value=6.5 Score=34.65 Aligned_cols=42 Identities=12% Similarity=0.142 Sum_probs=27.2
Q ss_pred cccCCcEEEEEcCccCCccccccccc--CCCC-EEEEcCCccccc
Q 038651 128 IVEFADAYIFVESIFNDYSSVGYSLL--LNKK-AILMQPDRIVVA 169 (324)
Q Consensus 128 ~l~~aDlvl~lG~~~~~~~t~~~~~~--~~~~-iI~id~d~~~i~ 169 (324)
.+++||++|++||++.-+....+... .... +|.|+.++....
T Consensus 177 ~~~~adl~lviGTSl~V~P~~~l~~~a~~~g~~~i~IN~~~~~~d 221 (246)
T 1yc5_A 177 LSSRASLMIVLGSSLVVYPAAELPLITVRSGGKLVIVNLGETPFD 221 (246)
T ss_dssp HHHHCSEEEEESCCSCEETGGGHHHHHHHHTCEEEEECSSCCTTG
T ss_pred HHhcCCEEEEECCCCcchhHHHHHHHHHHcCCeEEEEeCCCCCCC
Confidence 55689999999998865443222111 1233 899999887654
No 80
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=42.52 E-value=6.7 Score=34.74 Aligned_cols=42 Identities=14% Similarity=0.263 Sum_probs=27.3
Q ss_pred cccCCcEEEEEcCccCCccccccccc--CCCC-EEEEcCCccccc
Q 038651 128 IVEFADAYIFVESIFNDYSSVGYSLL--LNKK-AILMQPDRIVVA 169 (324)
Q Consensus 128 ~l~~aDlvl~lG~~~~~~~t~~~~~~--~~~~-iI~id~d~~~i~ 169 (324)
.+++||++|++||++.-+....+... .... +|.|+.++....
T Consensus 180 ~~~~adl~lviGTSl~V~P~~~l~~~a~~~g~~~i~iN~~~~~~d 224 (253)
T 1ma3_A 180 EAKHCDAFMVVGSSLVVYPAAELPYIAKKAGAKMIIVNAEPTMAD 224 (253)
T ss_dssp HHHHCSEEEEESCCSCEETGGGHHHHHHHHTCEEEEEESSCCTTG
T ss_pred HHHhCCEEEEECCCceeccHHHHHHHHHHcCCeEEEEeCCCCCCC
Confidence 55689999999998865443222111 1233 889998887654
No 81
>1m2k_A Silent information regulator 2; protein-ligand complex, gene regulation; HET: APR; 1.47A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1m2g_A* 1m2h_A* 1m2j_A* 1m2n_A* 1ici_A*
Probab=42.05 E-value=6.5 Score=34.71 Aligned_cols=42 Identities=21% Similarity=0.189 Sum_probs=27.4
Q ss_pred cccCCcEEEEEcCccCCccccccccc--CCCC-EEEEcCCccccc
Q 038651 128 IVEFADAYIFVESIFNDYSSVGYSLL--LNKK-AILMQPDRIVVA 169 (324)
Q Consensus 128 ~l~~aDlvl~lG~~~~~~~t~~~~~~--~~~~-iI~id~d~~~i~ 169 (324)
.+++||++|++||++.-+....+... .... +|.|+.++....
T Consensus 174 ~~~~adlllviGTSl~V~P~~~l~~~a~~~g~~~i~IN~~~~~~d 218 (249)
T 1m2k_A 174 EVERADVIIVAGTSAVVQPAASLPLIVKQRGGAIIEINPDETPLT 218 (249)
T ss_dssp HHHHCSEEEEESCCSCSTTGGGHHHHHHHTTCEEEEECSSCCTTG
T ss_pred HHhcCCEEEEEccCCCccchHHHHHHHHHcCCeEEEEeCCCCCCC
Confidence 45679999999998865443222111 1233 899999887654
No 82
>2r4q_A Phosphotransferase system (PTS) fructose-specific iiabc component; fructose specific IIB subunit, PF structural genomics, PSI-2; HET: MSE; 1.60A {Bacillus subtilis subsp} SCOP: c.44.2.2
Probab=41.39 E-value=23 Score=27.10 Aligned_cols=60 Identities=20% Similarity=0.152 Sum_probs=42.0
Q ss_pred cchHHHHHHHHHHhCCcEEe-cCCCCCc-------cccCCcEEEEEcCccCCcccccccccCCCCEEEEcCCc
Q 038651 101 SKATIAFVELADACGYAFAV-MPSAKGM-------IVEFADAYIFVESIFNDYSSVGYSLLLNKKAILMQPDR 165 (324)
Q Consensus 101 ~~a~~~l~~lae~l~~Pv~t-t~~gkg~-------~l~~aDlvl~lG~~~~~~~t~~~~~~~~~~iI~id~d~ 165 (324)
+=+.+.|++-|+++|+.+-. |..+-|+ -+++||+||+.+..--+. ..|-.+++++++++.
T Consensus 19 ymAaeaL~~aA~~~G~~ikVEtqGs~G~~n~Lt~~~I~~Ad~VIiA~d~~v~~-----~RF~GK~v~~~~v~~ 86 (106)
T 2r4q_A 19 FMAADALKEKAKELGVEIKVETNGSSGIKHKLTAQEIEDAPAIIVAADKQVEM-----ERFKGKRVLQVPVTA 86 (106)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEEEETTEEESCCCHHHHHHCSCEEEEESSCCCC-----GGGTTSBEEEECHHH
T ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCCccCCCCHHHHHhCCEEEEEeCCccCH-----hHcCCCeEEEeCHHH
Confidence 34678999999999999875 5445565 678999999999655332 122223388887664
No 83
>1vkr_A Mannitol-specific PTS system enzyme iiabc compone; phosphotransferase, transferase, kinase, sugar transport; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1vrv_A* 2few_B*
Probab=41.33 E-value=26 Score=27.36 Aligned_cols=54 Identities=9% Similarity=-0.018 Sum_probs=35.2
Q ss_pred cCCCcEEEECCCCCccch-HHHHHHHHHHhCC-c--EEecCCCCCccccCCcEEEEEcCcc
Q 038651 86 KAVKPAMIGGPKLSVSKA-TIAFVELADACGY-A--FAVMPSAKGMIVEFADAYIFVESIF 142 (324)
Q Consensus 86 ~AkrPvIl~G~g~~~~~a-~~~l~~lae~l~~-P--v~tt~~gkg~~l~~aDlvl~lG~~~ 142 (324)
+-+|-++++|.|...+.. ...+++.++..|+ + +-...... +-.++|+||. +..+
T Consensus 12 ~~kkIlvVC~sGmgTS~ml~~klkk~~~e~gi~~~~V~~~~i~e--~~~~~DlIis-t~~l 69 (125)
T 1vkr_A 12 HVRKIIVACDAGMGSSAMGAGVLRKKIQDAGLSQISVTNSAINN--LPPDVDLVIT-HRDL 69 (125)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHHHHHHHHTTCTTSEEEECCTTC--CCTTCSEEEE-EHHH
T ss_pred cccEEEEECCCcHHHHHHHHHHHHHHHHHCCCceEEEEEeeHHH--CCCCCCEEEE-CCcc
Confidence 346788999999977666 4688899998998 5 33222221 2247886654 3444
No 84
>2ioj_A Hypothetical protein AF_1212; NYSGXRC, PFAM:DRTGG, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Archaeoglobus fulgidus} SCOP: c.98.2.2
Probab=41.27 E-value=20 Score=28.18 Aligned_cols=33 Identities=12% Similarity=0.050 Sum_probs=24.1
Q ss_pred CCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCC
Q 038651 88 VKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPS 123 (324)
Q Consensus 88 krPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~ 123 (324)
+-|.|++-+|.. -.+++.++|++.|+||+.|..
T Consensus 74 ~~~~iIlt~g~~---~~~~i~~~A~~~~ipvl~t~~ 106 (139)
T 2ioj_A 74 NVRCLILTGNLE---PVQLVLTKAEERGVPVILTGH 106 (139)
T ss_dssp TEEEEEEETTCC---CCHHHHHHHHHHTCCEEECSS
T ss_pred CCcEEEEcCCCC---CCHHHHHHHHHCCCeEEEECC
Confidence 455555555543 456788999999999999875
No 85
>3u31_A SIR2A, transcriptional regulatory protein SIR2 homologue; Zn-binding domain, rossmann fold domain; HET: MYK NAD; 2.20A {Plasmodium falciparum} PDB: 3u3d_A* 3jwp_A*
Probab=40.87 E-value=6.5 Score=35.70 Aligned_cols=42 Identities=7% Similarity=0.101 Sum_probs=27.5
Q ss_pred cccCCcEEEEEcCccCCccccccccc--CCCC-EEEEcCCccccc
Q 038651 128 IVEFADAYIFVESIFNDYSSVGYSLL--LNKK-AILMQPDRIVVA 169 (324)
Q Consensus 128 ~l~~aDlvl~lG~~~~~~~t~~~~~~--~~~~-iI~id~d~~~i~ 169 (324)
.+++||++|++||++.-+....+... .... +|.|+.++....
T Consensus 213 ~~~~aDllLviGTSl~V~Paa~l~~~a~~~g~~~v~IN~~~t~~~ 257 (290)
T 3u31_A 213 EIAKCDLLLVIGTSSTVSTATNLCHFACKKKKKIVEINISKTYIT 257 (290)
T ss_dssp HHHHCSEEEEESCCSCSHHHHHHHHHHHHTTCCEEEEESSCCTTT
T ss_pred HHhcCCEEEEECcCCcchhHHHHHHHHHHcCCEEEEECCCCCCCC
Confidence 45689999999999965433222111 1233 888998887654
No 86
>1efv_A Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 c.31.1.2 PDB: 2a1u_A* 1t9g_R* 2a1t_R*
Probab=40.84 E-value=67 Score=29.21 Aligned_cols=79 Identities=20% Similarity=0.154 Sum_probs=50.7
Q ss_pred hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecC-------CCCCc------cccCCcEEEEEcCccCCcccccc
Q 038651 84 LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMP-------SAKGM------IVEFADAYIFVESIFNDYSSVGY 150 (324)
Q Consensus 84 L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~-------~gkg~------~l~~aDlvl~lG~~~~~~~t~~~ 150 (324)
|.+|+ -++-.|.|+...+..+.+++||++||.-|-.|- ..+.. ..=..||-|++|-+=.-....+.
T Consensus 194 L~~A~-ivVsgGrG~~~~e~f~~~~~LA~~Lga~vgaSR~~vd~Gw~~~~~QVGqTGk~V~P~lYiA~GISGAiQHlaGm 272 (315)
T 1efv_A 194 LTGAK-VVVSGGRGLKSGENFKLLYDLADQLHAAVGASRAAVDAGFVPNDMQVGQTGKIVAPELYIAVGISGAIQHLAGM 272 (315)
T ss_dssp GGGCS-EEEEECGGGCSTGGGHHHHHHHHHHTCEEEECHHHHHTTSSCGGGBBSTTSBCCCCSEEEEESCCCCHHHHTTT
T ss_pred cCCCC-EEEEcCCcCCChHHHHHHHHHHHHhCCceeecHHHHhCCCCCHHheeccCCcccCcceEEEecccCcHHHHhhc
Confidence 44553 344556666666677899999999999888772 11111 22357999999966432222232
Q ss_pred cccCCCC-EEEEcCCcc
Q 038651 151 SLLLNKK-AILMQPDRI 166 (324)
Q Consensus 151 ~~~~~~~-iI~id~d~~ 166 (324)
. ..+ ||-|+.|+.
T Consensus 273 ~---~s~~IVAIN~D~~ 286 (315)
T 1efv_A 273 K---DSKTIVAINKDPE 286 (315)
T ss_dssp T---TCSEEEEEESCTT
T ss_pred c---cCCEEEEEeCCCC
Confidence 2 345 899999875
No 87
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=40.79 E-value=25 Score=33.07 Aligned_cols=54 Identities=15% Similarity=0.027 Sum_probs=36.7
Q ss_pred CCCcEEEECC-CCCccchHHHHHHHHHHhCCcEEecCCC----CCc----------cccCCcEEEEEcCc
Q 038651 87 AVKPAMIGGP-KLSVSKATIAFVELADACGYAFAVMPSA----KGM----------IVEFADAYIFVESI 141 (324)
Q Consensus 87 AkrPvIl~G~-g~~~~~a~~~l~~lae~l~~Pv~tt~~g----kg~----------~l~~aDlvl~lG~~ 141 (324)
.+|++|+.|. .....+..+.+.+..+..|+.+. .+.+ +.. .-.++|+||+||..
T Consensus 43 ~~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~-~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 111 (407)
T 1vlj_A 43 IRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWV-EVSGVKPNPVLSKVHEAVEVAKKEKVEAVLGVGGG 111 (407)
T ss_dssp CCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEE-EECCCCSSCBHHHHHHHHHHHHHTTCSEEEEEESH
T ss_pred CCeEEEEECchHHhhccHHHHHHHHHHHcCCeEE-EecCccCCCCHHHHHHHHHHHHhcCCCEEEEeCCh
Confidence 4789999984 44444567888888888888775 3332 111 22578999999863
No 88
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=40.04 E-value=25 Score=32.38 Aligned_cols=37 Identities=16% Similarity=0.197 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHhCCcEEec-CCCCCc------------------cccCCcEEEEEc
Q 038651 103 ATIAFVELADACGYAFAVM-PSAKGM------------------IVEFADAYIFVE 139 (324)
Q Consensus 103 a~~~l~~lae~l~~Pv~tt-~~gkg~------------------~l~~aDlvl~lG 139 (324)
....|..||..+++||+.. ...|+. +-+.||+|+++-
T Consensus 184 isr~LK~lAkel~vpVi~lsQl~R~~e~r~dkrP~lsDLreSg~IeqdAD~Vl~l~ 239 (338)
T 4a1f_A 184 ISRELKTLARELEIPIIALVQLNRSLENRDDKRPILSDIKDSGGIEQDADIVLFLY 239 (338)
T ss_dssp HHHHHHHHHHHHTSCEEEEEECCGGGGGSSSCSCCGGGSEETTEECCCCSEEEEEE
T ss_pred HHHHHHHHHHHcCCeEEEEEecCccccccccCCCChHhcccchhhhhhCcEEEEEe
Confidence 3567899999999999964 333432 557899999885
No 89
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=39.69 E-value=76 Score=28.54 Aligned_cols=57 Identities=9% Similarity=0.050 Sum_probs=38.8
Q ss_pred EeCCcchHHHHHHHHHHhhcCCcchhhhhhhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCC
Q 038651 55 VTFIVGRLSIINAIAGAYSENFPAATITALLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPS 123 (324)
Q Consensus 55 ~t~GpG~~N~~tgla~A~~d~~Pvl~It~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~ 123 (324)
...|.|=|-++.-|+..+.. ..+-+++++....+..+.+++..++++.++|++....
T Consensus 111 G~~GsGKTTl~~~LA~~l~~------------~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s 167 (306)
T 1vma_A 111 GVNGTGKTTSCGKLAKMFVD------------EGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSE 167 (306)
T ss_dssp CCTTSSHHHHHHHHHHHHHH------------TTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCST
T ss_pred cCCCChHHHHHHHHHHHHHh------------cCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCC
Confidence 45666767777777766532 2233455555566667788899999999999986544
No 90
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=39.53 E-value=1.3e+02 Score=27.18 Aligned_cols=93 Identities=6% Similarity=0.028 Sum_probs=52.3
Q ss_pred EEEEeCCcchHHHHHHHHHHhhcCC-cchhhhhhhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc---
Q 038651 52 AYVVTFIVGRLSIINAIAGAYSENF-PAATITALLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM--- 127 (324)
Q Consensus 52 v~~~t~GpG~~N~~tgla~A~~d~~-Pvl~It~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~--- 127 (324)
+++..||-| +.+.+|..++.++. | + ..+.++..-. + +.++|++.|+|+..-+..+..
T Consensus 108 i~vl~Sg~g--~nl~~ll~~~~~g~l~---------~-~I~~Visn~~---~----~~~~A~~~gIp~~~~~~~~~~r~~ 168 (302)
T 3o1l_A 108 VVLMASRES--HCLADLLHRWHSDELD---------C-DIACVISNHQ---D----LRSMVEWHDIPYYHVPVDPKDKEP 168 (302)
T ss_dssp EEEEECSCC--HHHHHHHHHHHTTCSC---------S-EEEEEEESSS---T----THHHHHTTTCCEEECCCCSSCCHH
T ss_pred EEEEEeCCc--hhHHHHHHHHHCCCCC---------c-EEEEEEECcH---H----HHHHHHHcCCCEEEcCCCcCCHHH
Confidence 444457777 56888888877652 2 1 2223332211 1 246799999999985432211
Q ss_pred -------cc--cCCcEEEEEcCccCCcccccccccCCCCEEEEcCCc
Q 038651 128 -------IV--EFADAYIFVESIFNDYSSVGYSLLLNKKAILMQPDR 165 (324)
Q Consensus 128 -------~l--~~aDlvl~lG~~~~~~~t~~~~~~~~~~iI~id~d~ 165 (324)
.+ .+.|+|++.|... .-+..+-..++..+|.|++.-
T Consensus 169 ~~~~~~~~l~~~~~DliVlagym~--IL~~~~l~~~~~~~INiHpSl 213 (302)
T 3o1l_A 169 AFAEVSRLVGHHQADVVVLARYMQ--ILPPQLCREYAHQVINIHHSF 213 (302)
T ss_dssp HHHHHHHHHHHTTCSEEEESSCCS--CCCTTHHHHTTTCEEEEESSC
T ss_pred HHHHHHHHHHHhCCCEEEHhHhhh--hcCHHHHhhhhCCeEEeCccc
Confidence 33 3689999999532 111112122333478887763
No 91
>1efp_A ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3 c.31.1.2
Probab=38.99 E-value=67 Score=29.10 Aligned_cols=79 Identities=22% Similarity=0.193 Sum_probs=50.2
Q ss_pred hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecC-------CCCCc------cccCCcEEEEEcCccCCcccccc
Q 038651 84 LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMP-------SAKGM------IVEFADAYIFVESIFNDYSSVGY 150 (324)
Q Consensus 84 L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~-------~gkg~------~l~~aDlvl~lG~~~~~~~t~~~ 150 (324)
|.+|+ -++-.|.|+...+..+.+++||++||.-|-.|- ..+.. ..=..+|-|++|-+=.-....+.
T Consensus 189 L~~A~-ivVsgGRG~~~~e~f~~~~~LA~~Lga~vgaSR~~vd~Gw~~~~~QVGqTGk~V~P~lYiA~GISGAiQHlaGm 267 (307)
T 1efp_A 189 LTSAR-RVVSGGRGLGSKESFAIIEELADKLGAAVGASRAAVDSGYAPNDWQVGQTGKVVAPELYVAVGISGAIQHLAGM 267 (307)
T ss_dssp TTTCS-EEEEECGGGCSSSTTHHHHHHHHHHTCEEEECHHHHHTTSSCGGGBBSSSSBCCCCSEEEEESCCCCHHHHTTT
T ss_pred cCCCC-EEEEcCCcCCCHHHHHHHHHHHHHhCCceeecHHHHhCCCCChhhEeccCCcccCCceEEEEeccCcHHHHhhh
Confidence 44443 344456666655677899999999999888772 21211 22357999999966432222232
Q ss_pred cccCCCC-EEEEcCCcc
Q 038651 151 SLLLNKK-AILMQPDRI 166 (324)
Q Consensus 151 ~~~~~~~-iI~id~d~~ 166 (324)
. ..+ ||-|+.|+.
T Consensus 268 ~---~s~~IVAIN~D~~ 281 (307)
T 1efp_A 268 K---DSKVIVAINKDEE 281 (307)
T ss_dssp T---TCSEEEEEESCTT
T ss_pred c---cCCEEEEEeCCCC
Confidence 2 345 899999875
No 92
>1vkm_A Conserved hypothetical protein TM1464; indigoidine synthase A-like fold, structural genomics, joint for structural genomics, JCSG; HET: MSE UNL; 1.90A {Thermotoga maritima} SCOP: c.138.1.1
Probab=37.68 E-value=10 Score=34.44 Aligned_cols=94 Identities=9% Similarity=0.004 Sum_probs=71.9
Q ss_pred EeecCchHHHHHHHHHHhhhcC--ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh---------------hhcCCCc
Q 038651 28 DVGCCNELNAGYAADGSARARA--VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA---------------LLKAVKP 90 (324)
Q Consensus 28 ~i~~rhE~~A~~aAdgYaR~tg--~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~---------------L~~AkrP 90 (324)
.|+--.|+---+++++..|++. ++.++..-..|+|-.-.-+.-|...+++|.+--+ ..=++.|
T Consensus 71 ~VGL~~~eLe~la~~~~~K~SrRDl~~~~a~g~~GaTTVaaTm~lA~~AGI~VFaTGGiGGVHRgt~DISaDL~eL~rTp 150 (297)
T 1vkm_A 71 VAGMSEEELEAMMREGADKVGTREIPIVVAEGKNAATTVSATIFLSRRIGIEVVVTGGTGGVHPGRVDVSQDLTEMSSSR 150 (297)
T ss_dssp EESCCHHHHHHHHHHCCEEECGGGHHHHHHHTCCEEECHHHHHHHHHHHTCCEEECSCBCCBCTTSSCBCHHHHHHTTCC
T ss_pred EECCCHHHHHHHhcCCCccccHhhHHHHHhCCCCchhhHHHHHHHHHHcCCcEEEecccccccCCCcccchhHHHhcCCC
Confidence 3444455555555677778764 7888888888888888888889999999988533 2337889
Q ss_pred EEEECCCCCccchHHHHHHHHHHhCCcEEec
Q 038651 91 AMIGGPKLSVSKATIAFVELADACGYAFAVM 121 (324)
Q Consensus 91 vIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt 121 (324)
|.++-.|+..-=-...-.|+.|..|+||++-
T Consensus 151 V~VVcaG~KsILDi~~TLE~LET~GV~Vvgy 181 (297)
T 1vkm_A 151 AVLVSSGIKSILDVEATFEMLETLEIPLVGF 181 (297)
T ss_dssp EEEEESBBCTTSCHHHHHHHHHHTTCCEEEE
T ss_pred eEEEecccchhhcchhHHHHHHhCCceEEEe
Confidence 9999999976556677888999999999975
No 93
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=37.04 E-value=31 Score=31.99 Aligned_cols=54 Identities=9% Similarity=0.075 Sum_probs=36.5
Q ss_pred CCcEEEECCCCC-ccchHHHHHHHHHHhCCcEEecCCC---CCc----------cccCCcEEEEEcCc
Q 038651 88 VKPAMIGGPKLS-VSKATIAFVELADACGYAFAVMPSA---KGM----------IVEFADAYIFVESI 141 (324)
Q Consensus 88 krPvIl~G~g~~-~~~a~~~l~~lae~l~~Pv~tt~~g---kg~----------~l~~aDlvl~lG~~ 141 (324)
+|++|+.|.... ..+..+.+.+..+..|+.+..-... +.. .-.++|+||+||..
T Consensus 41 ~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGG 108 (371)
T 1o2d_A 41 KRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERYRNDSFDFVVGLGGG 108 (371)
T ss_dssp SEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHHTTSCCSEEEEEESH
T ss_pred CEEEEEECchHHhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHhcCCCEEEEeCCh
Confidence 799999988553 3456788888888888876432211 222 22478999999863
No 94
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=36.54 E-value=1.2e+02 Score=28.81 Aligned_cols=57 Identities=11% Similarity=0.032 Sum_probs=41.3
Q ss_pred EeCCcchHHHHHHHHHHhhcCCcchhhhhhhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCC
Q 038651 55 VTFIVGRLSIINAIAGAYSENFPAATITALLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPS 123 (324)
Q Consensus 55 ~t~GpG~~N~~tgla~A~~d~~Pvl~It~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~ 123 (324)
...|.|=|-++..|+..+.. ..+-+++++.-..+..+.+++..+++..|+|++....
T Consensus 105 G~~GsGKTT~~~~LA~~l~~------------~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~ 161 (425)
T 2ffh_A 105 GLQGSGKTTTAAKLALYYKG------------KGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMD 161 (425)
T ss_dssp CCTTSSHHHHHHHHHHHHHT------------TTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCT
T ss_pred CCCCCCHHHHHHHHHHHHHH------------cCCeEEEeeccccCchhHHHHHHhcccCCccEEecCC
Confidence 45677777777777776542 3345566666677777778889999999999998654
No 95
>1jkx_A GART;, phosphoribosylglycinamide formyltransferase; purine biosynthesis, anti-cancer agent; HET: 138; 1.60A {Escherichia coli} SCOP: c.65.1.1 PDB: 1cdd_A 1cde_A* 1c2t_A* 1grc_A 1gar_A* 2gar_A 3gar_A 1c3e_A*
Probab=36.33 E-value=53 Score=28.04 Aligned_cols=91 Identities=18% Similarity=0.118 Sum_probs=49.6
Q ss_pred EEEeCCcchHHHHHHHHHHhhcCC----cchhhhhhhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCC--CCC
Q 038651 53 YVVTFIVGRLSIINAIAGAYSENF----PAATITALLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPS--AKG 126 (324)
Q Consensus 53 ~~~t~GpG~~N~~tgla~A~~d~~----Pvl~It~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~--gkg 126 (324)
++..||-| ..+.+|.++..++- .+.|+| +..+ + ...++|++.|+|++.-.. -++
T Consensus 4 ~vl~Sg~g--snl~ali~~~~~~~~~~~i~~Vis---~~~~-------------~--~~~~~A~~~gIp~~~~~~~~~~~ 63 (212)
T 1jkx_A 4 VVLISGNG--SNLQAIIDACKTNKIKGTVRAVFS---NKAD-------------A--FGLERARQAGIATHTLIASAFDS 63 (212)
T ss_dssp EEEESSCC--HHHHHHHHHHHTTSSSSEEEEEEE---SCTT-------------C--HHHHHHHHTTCEEEECCGGGCSS
T ss_pred EEEEECCc--HHHHHHHHHHHcCCCCceEEEEEe---CCCc-------------h--HHHHHHHHcCCcEEEeCcccccc
Confidence 44567777 34788888877653 122222 1111 1 247899999999997321 111
Q ss_pred -------c--cc--cCCcEEEEEcCccCCcccccccccCCCCEEEEcCCc
Q 038651 127 -------M--IV--EFADAYIFVESIFNDYSSVGYSLLLNKKAILMQPDR 165 (324)
Q Consensus 127 -------~--~l--~~aDlvl~lG~~~~~~~t~~~~~~~~~~iI~id~d~ 165 (324)
+ .+ .+.|++++.|... .-...+-..++..+|.|++..
T Consensus 64 r~~~~~~~~~~l~~~~~Dliv~agy~~--il~~~~l~~~~~~~iNiHpSl 111 (212)
T 1jkx_A 64 REAYDRELIHEIDMYAPDVVVLAGFMR--ILSPAFVSHYAGRLLNIHPSL 111 (212)
T ss_dssp HHHHHHHHHHHHGGGCCSEEEESSCCS--CCCHHHHHHTTTSEEEEESSC
T ss_pred hhhccHHHHHHHHhcCCCEEEEeChhh--hCCHHHHhhccCCEEEEccCc
Confidence 1 22 3789999999532 111111111233377776664
No 96
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=35.64 E-value=40 Score=27.56 Aligned_cols=52 Identities=19% Similarity=0.191 Sum_probs=36.3
Q ss_pred CCcEEEECCCCCccch----HHHHHHHHHHhCCcEEecCCCCC------c------cccCCcEEEEEcC
Q 038651 88 VKPAMIGGPKLSVSKA----TIAFVELADACGYAFAVMPSAKG------M------IVEFADAYIFVES 140 (324)
Q Consensus 88 krPvIl~G~g~~~~~a----~~~l~~lae~l~~Pv~tt~~gkg------~------~l~~aDlvl~lG~ 140 (324)
-|..+++|+.+-..+. .+++.++++..|..|+. +.-.. + .+++||+||++=+
T Consensus 9 ~~~~~y~a~~~F~~~e~~~~~~~l~~~l~~~G~~v~~-P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ld 76 (161)
T 2f62_A 9 MRKIYIAGPAVFNPDMGASYYNKVRELLKKENVMPLI-PTDNEATEALDIRQKNIQMIKDCDAVIADLS 76 (161)
T ss_dssp CCEEEEESGGGGSTTTTHHHHHHHHHHHHTTTCEEEC-TTTTCCSSHHHHHHHHHHHHHHCSEEEEECC
T ss_pred hhceEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEC-CCccCcchHHHHHHHHHHHHHhCCEEEEEec
Confidence 4678889888865544 35677777777887665 33222 1 8899999999944
No 97
>3tqr_A Phosphoribosylglycinamide formyltransferase; purines, pyrimidines, nucleosides, nucleotides; HET: NHE; 1.97A {Coxiella burnetii} SCOP: c.65.1.0
Probab=35.27 E-value=1.2e+02 Score=26.00 Aligned_cols=95 Identities=12% Similarity=0.115 Sum_probs=50.8
Q ss_pred EEEEeCCcchHHHHHHHHHHhhcCCcchhhhhhhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecC----CCCC-
Q 038651 52 AYVVTFIVGRLSIINAIAGAYSENFPAATITALLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMP----SAKG- 126 (324)
Q Consensus 52 v~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~----~gkg- 126 (324)
+++..||-| +.+.+|..+..++.+. +.+.++-. +.++. ..++|++.|+|++.-. ..|-
T Consensus 8 iavl~SG~G--snl~all~~~~~~~~~----------eI~~Vis~---~~~a~--~~~~A~~~gIp~~~~~~~~~~~r~~ 70 (215)
T 3tqr_A 8 IVVLISGNG--TNLQAIIGAIQKGLAI----------EIRAVISN---RADAY--GLKRAQQADIPTHIIPHEEFPSRTD 70 (215)
T ss_dssp EEEEESSCC--HHHHHHHHHHHTTCSE----------EEEEEEES---CTTCH--HHHHHHHTTCCEEECCGGGSSSHHH
T ss_pred EEEEEeCCc--HHHHHHHHHHHcCCCC----------EEEEEEeC---CcchH--HHHHHHHcCCCEEEeCccccCchhH
Confidence 344457777 6788888888765221 12222221 11121 2588999999998732 1121
Q ss_pred ----c--cc--cCCcEEEEEcCccCCcccccccccCCCCEEEEcCCc
Q 038651 127 ----M--IV--EFADAYIFVESIFNDYSSVGYSLLLNKKAILMQPDR 165 (324)
Q Consensus 127 ----~--~l--~~aDlvl~lG~~~~~~~t~~~~~~~~~~iI~id~d~ 165 (324)
+ .+ .+.|++++.|... .-...+-..++..+|.|++..
T Consensus 71 ~d~~~~~~l~~~~~Dliv~agy~~--il~~~~l~~~~~~~iNiHpSL 115 (215)
T 3tqr_A 71 FESTLQKTIDHYDPKLIVLAGFMR--KLGKAFVSHYSGRMINIHPSL 115 (215)
T ss_dssp HHHHHHHHHHTTCCSEEEESSCCS--CCCHHHHHHTTTSEEEEESSS
T ss_pred hHHHHHHHHHhcCCCEEEEccchh--hCCHHHHhhccCCeEEeCccc
Confidence 1 23 3789999999532 111111111233377777664
No 98
>4ex8_A ALNA; alpha/beta/alpha-domain, C-glycosynthase, divalent metal ION ligase; 2.10A {Streptomyces SP} PDB: 4ex9_A*
Probab=34.96 E-value=11 Score=34.53 Aligned_cols=78 Identities=10% Similarity=-0.007 Sum_probs=61.7
Q ss_pred Hhhhc-C-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh------------------hhcCCCcEEEECCCCCccch
Q 038651 44 SARAR-A-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA------------------LLKAVKPAMIGGPKLSVSKA 103 (324)
Q Consensus 44 YaR~t-g-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~------------------L~~AkrPvIl~G~g~~~~~a 103 (324)
..|++ + ++.++..-..|+|-.-.-+.-|...+++|.+--+ ..=++.||.++-.|+..-=.
T Consensus 94 ~~K~SrRDl~~~~a~g~~GaTTVaaTm~lA~~AGI~VFaTGGiGGVHRgae~t~DISaDL~eLarTpV~VVcaG~KsILD 173 (316)
T 4ex8_A 94 IPKISARDIGGALAGGGLGATTVAGTIVIAERAGIQVFTTAGIGGVHRRGEDTLDISPDLLQFRKTKMTVVSGGAKSILD 173 (316)
T ss_dssp CCEECGGGHHHHHHHCSCBEECHHHHHHHHHHHTCCEEECSCBCCBBTTHHHHCCBCTHHHHTTTCCEEEEESBBCTTBC
T ss_pred ccccchhhHHHHHhCCCCccccHHHHHHHHHHCCCcEEEeCCccccCCCCCCCcchhhhHHHhcCCCeEEEecccchhhc
Confidence 45655 3 7888777788888888888888999999988532 23478999999999986556
Q ss_pred HHHHHHHHHHhCCcEEec
Q 038651 104 TIAFVELADACGYAFAVM 121 (324)
Q Consensus 104 ~~~l~~lae~l~~Pv~tt 121 (324)
...-.|+.|..|+||++-
T Consensus 174 i~~TLE~LET~GV~Vvgy 191 (316)
T 4ex8_A 174 HRLTAEYLETAGVPVYGY 191 (316)
T ss_dssp HHHHHHHHHHTTCCEEEE
T ss_pred chHHHHHHHhCCceEEEe
Confidence 778889999999999965
No 99
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=34.49 E-value=1.2e+02 Score=27.30 Aligned_cols=93 Identities=14% Similarity=0.095 Sum_probs=51.4
Q ss_pred eEEEEeCCcchHHHHHHHHHHhhcC-CcchhhhhhhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc--
Q 038651 51 GAYVVTFIVGRLSIINAIAGAYSEN-FPAATITALLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM-- 127 (324)
Q Consensus 51 gv~~~t~GpG~~N~~tgla~A~~d~-~Pvl~It~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~-- 127 (324)
=+++..||-| +.+..|..++.++ .| + +.+.++..-. ++ .++|++.|||+..-+..+..
T Consensus 97 ri~vl~Sg~g--~~l~~ll~~~~~g~l~---------~-~i~~Visn~~---~~----~~~A~~~gIp~~~~~~~~~~r~ 157 (292)
T 3lou_A 97 KVLIMVSKLE--HCLADLLFRWKMGELK---------M-DIVGIVSNHP---DF----APLAAQHGLPFRHFPITADTKA 157 (292)
T ss_dssp EEEEEECSCC--HHHHHHHHHHHHTSSC---------C-EEEEEEESSS---TT----HHHHHHTTCCEEECCCCSSCHH
T ss_pred EEEEEEcCCC--cCHHHHHHHHHcCCCC---------c-EEEEEEeCcH---HH----HHHHHHcCCCEEEeCCCcCCHH
Confidence 3444457777 6788888887654 22 2 2333332221 22 35799999999975432211
Q ss_pred --------cc--cCCcEEEEEcCccCCcccccccccCCCCEEEEcCC
Q 038651 128 --------IV--EFADAYIFVESIFNDYSSVGYSLLLNKKAILMQPD 164 (324)
Q Consensus 128 --------~l--~~aDlvl~lG~~~~~~~t~~~~~~~~~~iI~id~d 164 (324)
.+ .+.|+|++.|... .-+..+-..++..+|.|++.
T Consensus 158 ~~~~~~~~~l~~~~~Dlivla~y~~--il~~~~l~~~~~~~iNiHpS 202 (292)
T 3lou_A 158 QQEAQWLDVFETSGAELVILARYMQ--VLSPEASARLANRAINIHHS 202 (292)
T ss_dssp HHHHHHHHHHHHHTCSEEEESSCCS--CCCHHHHHHTTTSEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEecCchh--hCCHHHHhhhcCCeEEeCCC
Confidence 33 2799999999532 11111111233347777665
No 100
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=34.37 E-value=95 Score=30.44 Aligned_cols=83 Identities=10% Similarity=0.031 Sum_probs=46.1
Q ss_pred EEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhh-hhC-------C---CC-CCCCCCCHHHHHHHHHHHH
Q 038651 212 VIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVE-IHD-------G---PY-NVIENWNYTGLVEAFQNAI 279 (324)
Q Consensus 212 vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~-~~~-------~---~~-~~l~~~df~~lA~a~G~al 279 (324)
+++-.|.+...+ +.-|.+|...++|+++|.-.-....+-+. +|. + .| ..+..+ ..+.+.+--|+
T Consensus 79 ~~~TsGpG~~N~--~~gv~~A~~~~vPll~itg~~~~~~~g~~~~Q~~d~~~~~~~~~k~~~~v~~~--~~i~~~l~~A~ 154 (590)
T 1ybh_A 79 CIATSGPGATNL--VSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVMDV--EDIPRIIEEAF 154 (590)
T ss_dssp EEECTTHHHHTT--HHHHHHHHHHTCCEEEEEEECCGGGTTTTCTTCCCHHHHHGGGSSEEEECCCG--GGHHHHHHHHH
T ss_pred EEeccCchHHHH--HHHHHHHHhhCCCEEEEeCcCCccccCCCcccccCHHHHHHHHhCeEEecCCH--HHHHHHHHHHH
Confidence 444556554333 36699999999999999987655432211 110 0 11 112222 22333333355
Q ss_pred HHhHHhCCCCeEEEEEEecC
Q 038651 280 ETAAVEKKDCLCFIEAIVHK 299 (324)
Q Consensus 280 ~~a~~~~~~~p~lIeV~id~ 299 (324)
+.|. ....||+.|++..|-
T Consensus 155 ~~a~-~~~~GPV~l~iP~dv 173 (590)
T 1ybh_A 155 FLAT-SGRPGPVLVDVPKDI 173 (590)
T ss_dssp HHHH-SSSCCEEEEEEEHHH
T ss_pred HHHh-hCCCceEEEEeCcch
Confidence 5553 244689999998763
No 101
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=34.18 E-value=83 Score=30.63 Aligned_cols=77 Identities=8% Similarity=0.069 Sum_probs=46.0
Q ss_pred EEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhhhhCCCCCCCCC-CCHHHHHH-----------------
Q 038651 212 VIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVEIHDGPYNVIEN-WNYTGLVE----------------- 273 (324)
Q Consensus 212 vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~~~~~~~~~l~~-~df~~lA~----------------- 273 (324)
+++-.|.+...+ +.-|.+|...++|+++|.-.-.....-+. .+.. .|...+.+
T Consensus 70 ~~~TsGpG~~N~--~~~l~~A~~~~~Pll~itg~~~~~~~~~~-------~~Q~~~d~~~~~~~~tk~~~~v~~~~~~~~ 140 (563)
T 2uz1_A 70 ALVTAGGGFTNA--VTPIANAWLDRTPVLFLTGSGALRDDETN-------TLQAGIDQVAMAAPITKWAHRVMATEHIPR 140 (563)
T ss_dssp EEECTTHHHHTT--HHHHHHHHHHTCCEEEEEEECCGGGTTSC-------CTTCCCCHHHHHGGGCSEEEECCCGGGHHH
T ss_pred EEEccCccHHHH--HHHHHHHHhcCCCEEEEeCCCCcccCCch-------hhhhhccHHHHhhhhhceEEEcCCHHHHHH
Confidence 444455554433 36689999999999999987665432211 0112 33333333
Q ss_pred HHHHHHHHhHHhCCCCeEEEEEEec
Q 038651 274 AFQNAIETAAVEKKDCLCFIEAIVH 298 (324)
Q Consensus 274 a~G~al~~a~~~~~~~p~lIeV~id 298 (324)
.+--|++.|. ....||+.|++..|
T Consensus 141 ~l~~A~~~a~-~~~~GPV~l~iP~d 164 (563)
T 2uz1_A 141 LVMQAIRAAL-SAPRGPVLLDLPWD 164 (563)
T ss_dssp HHHHHHHHHH-SSSCCCEEEEEEHH
T ss_pred HHHHHHHHhc-CCCCceEEEEeCHH
Confidence 2222555554 34569999999988
No 102
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=33.87 E-value=23 Score=33.24 Aligned_cols=52 Identities=6% Similarity=-0.129 Sum_probs=31.0
Q ss_pred CCcEEEECCCCCccchHHHHHHHHHHhCCcE-EecCCCCCc---------c--ccCCcEEEEEcCc
Q 038651 88 VKPAMIGGPKLSVSKATIAFVELADACGYAF-AVMPSAKGM---------I--VEFADAYIFVESI 141 (324)
Q Consensus 88 krPvIl~G~g~~~~~a~~~l~~lae~l~~Pv-~tt~~gkg~---------~--l~~aDlvl~lG~~ 141 (324)
+|++|+.|.++... ..+.+.+..+. |+.+ +....+--. . -.++|+||+||..
T Consensus 53 ~r~liVtd~~~~~~-~~~~v~~~L~~-g~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGG 116 (387)
T 3uhj_A 53 KRALVLIDRVLFDA-LSERIGKSCGD-SLDIRFERFGGECCTSEIERVRKVAIEHGSDILVGVGGG 116 (387)
T ss_dssp SEEEEEECTTTHHH-HHHHC-------CCEEEEEECCSSCSHHHHHHHHHHHHHHTCSEEEEESSH
T ss_pred CEEEEEECchHHHH-HHHHHHHHHHc-CCCeEEEEcCCCCCHHHHHHHHHHHhhcCCCEEEEeCCc
Confidence 89999999888653 66777777777 8876 233332211 2 2478999999964
No 103
>3lyh_A Cobalamin (vitamin B12) biosynthesis CBIX protein; structural genomics, joint center for structural genomics, protein structure initiative; HET: MSE; 1.60A {Marinobacter aquaeolei}
Probab=32.75 E-value=28 Score=26.68 Aligned_cols=37 Identities=14% Similarity=-0.011 Sum_probs=26.2
Q ss_pred CCCcEEEECCCCCccchHHHHHHHHHHhC---CcEEecCC
Q 038651 87 AVKPAMIGGPKLSVSKATIAFVELADACG---YAFAVMPS 123 (324)
Q Consensus 87 AkrPvIl~G~g~~~~~a~~~l~~lae~l~---~Pv~tt~~ 123 (324)
.+..+|++|.|.+...+.+.+.+|++++. .+|...++
T Consensus 4 ~~~alllv~HGS~~~~~~~~~~~l~~~l~~~~~~V~~a~l 43 (126)
T 3lyh_A 4 QPHQIILLAHGSSDARWCETFEKLAEPTVESIENAAIAYM 43 (126)
T ss_dssp -CEEEEEEECCCSCHHHHHHHHHHHHHHHHHSTTCEEEES
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHHhhcCCEEEEEE
Confidence 46789999999987667777777777663 45555444
No 104
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=31.52 E-value=1.2e+02 Score=28.65 Aligned_cols=58 Identities=14% Similarity=0.107 Sum_probs=40.2
Q ss_pred EeCCcchHHHHHHHHHHhhcCCcchhhhhhhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCC
Q 038651 55 VTFIVGRLSIINAIAGAYSENFPAATITALLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPS 123 (324)
Q Consensus 55 ~t~GpG~~N~~tgla~A~~d~~Pvl~It~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~ 123 (324)
...|.|=|.+...||.++... .-+|+ +++.....+..+.+++..+.+..|+||+....
T Consensus 107 G~~GvGKTT~a~~LA~~l~~~----------~G~kV-llvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~ 164 (433)
T 2xxa_A 107 GLQGAGKTTSVGKLGKFLREK----------HKKKV-LVVSADVYRPAAIKQLETLAEQVGVDFFPSDV 164 (433)
T ss_dssp CSTTSSHHHHHHHHHHHHHHT----------SCCCE-EEEECCCSSTTHHHHHHHHHHHHTCEECCCCS
T ss_pred CCCCCCHHHHHHHHHHHHHHh----------cCCeE-EEEecCCCCccHHHHHHhhcccCCeeEEeCCC
Confidence 456777788888888776421 12344 44444456667888888899999999987654
No 105
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=31.18 E-value=91 Score=30.41 Aligned_cols=82 Identities=12% Similarity=0.054 Sum_probs=44.9
Q ss_pred EEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhh-hhC-------C---CC-CCCCCCCHHHHHHHHHHHH
Q 038651 212 VIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVE-IHD-------G---PY-NVIENWNYTGLVEAFQNAI 279 (324)
Q Consensus 212 vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~-~~~-------~---~~-~~l~~~df~~lA~a~G~al 279 (324)
+++-.|.+...+ +.-|.+|...++|+++|.-.-.....-+. .|. + .| ..+..+ ..+.+.+--|+
T Consensus 77 ~~~TsGpG~~N~--~~~l~~A~~~~vPll~itg~~~~~~~~~~~~Q~~d~~~~~~~~tk~~~~v~~~--~~~~~~i~~A~ 152 (566)
T 1ozh_A 77 ALVTSGPGCSNL--ITGMATANSEGDPVVALGGAVKRADKAKQVHQSMDTVAMFSPVTKYAIEVTAP--DALAEVVSNAF 152 (566)
T ss_dssp EEECSTHHHHTT--HHHHHHHHHHTCCEEEEEEECCTTTC------CCCHHHHHGGGCSEEEECCSG--GGHHHHHHHHH
T ss_pred EEEccChHHHHH--HHHHHHHHhcCCCEEEEeCCCccccCCCCcccccCHHHHHHHHhheEEEcCCH--HHHHHHHHHHH
Confidence 444556655433 36699999999999999988765433221 111 0 11 011111 12333222255
Q ss_pred HHhHHhCCCCeEEEEEEec
Q 038651 280 ETAAVEKKDCLCFIEAIVH 298 (324)
Q Consensus 280 ~~a~~~~~~~p~lIeV~id 298 (324)
+.|. ....||+.|++..|
T Consensus 153 ~~A~-~~r~GPV~l~iP~d 170 (566)
T 1ozh_A 153 RAAE-QGRPGSAFVSLPQD 170 (566)
T ss_dssp HHHH-SSSCCEEEEEEEHH
T ss_pred HHHh-cCCCCeEEEEeChh
Confidence 5553 23469999999987
No 106
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=31.12 E-value=1.5e+02 Score=26.47 Aligned_cols=92 Identities=10% Similarity=-0.009 Sum_probs=51.1
Q ss_pred EEEEeCCcchHHHHHHHHHHhhcC-CcchhhhhhhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc---
Q 038651 52 AYVVTFIVGRLSIINAIAGAYSEN-FPAATITALLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM--- 127 (324)
Q Consensus 52 v~~~t~GpG~~N~~tgla~A~~d~-~Pvl~It~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~--- 127 (324)
+++..||-| +.+..|..++.++ .| + ..+.++..-. + +.++|++.|+|+..-+..+..
T Consensus 93 i~vl~Sg~g--~~l~~ll~~~~~g~l~---------~-~i~~Visn~~---~----~~~~A~~~gIp~~~~~~~~~~r~~ 153 (286)
T 3n0v_A 93 VVIMVSKAD--HCLNDLLYRQRIGQLG---------M-DVVAVVSNHP---D----LEPLAHWHKIPYYHFALDPKDKPG 153 (286)
T ss_dssp EEEEESSCC--HHHHHHHHHHHTTSSC---------C-EEEEEEESSS---T----THHHHHHTTCCEEECCCBTTBHHH
T ss_pred EEEEEeCCC--CCHHHHHHHHHCCCCC---------c-EEEEEEeCcH---H----HHHHHHHcCCCEEEeCCCcCCHHH
Confidence 444457777 6788888887654 22 1 2222322211 1 245799999999975432211
Q ss_pred -------cc--cCCcEEEEEcCccCCcccccccccCCCCEEEEcCC
Q 038651 128 -------IV--EFADAYIFVESIFNDYSSVGYSLLLNKKAILMQPD 164 (324)
Q Consensus 128 -------~l--~~aDlvl~lG~~~~~~~t~~~~~~~~~~iI~id~d 164 (324)
.+ .+.|+|++.|... .-+..+-..++..+|.|++.
T Consensus 154 ~~~~~~~~l~~~~~Dlivla~y~~--il~~~~l~~~~~~~iNiHpS 197 (286)
T 3n0v_A 154 QERKVLQVIEETGAELVILARYMQ--VLSPELCRRLDGWAINIHHS 197 (286)
T ss_dssp HHHHHHHHHHHHTCSEEEESSCCS--CCCHHHHHHTTTSEEEEEEC
T ss_pred HHHHHHHHHHhcCCCEEEeccccc--ccCHHHHhhhcCCeEEeccc
Confidence 33 3799999999532 11111111233347777766
No 107
>3da8_A Probable 5'-phosphoribosylglycinamide formyltransferase PURN; glycinamide ribonucleotide transformylase, structure; 1.30A {Mycobacterium tuberculosis} PDB: 3dcj_A*
Probab=29.80 E-value=66 Score=27.58 Aligned_cols=94 Identities=13% Similarity=0.159 Sum_probs=49.3
Q ss_pred EEEEeCCcchHHHHHHHHHHhhcCCcchhhhhhhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCC----CC-
Q 038651 52 AYVVTFIVGRLSIINAIAGAYSENFPAATITALLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSA----KG- 126 (324)
Q Consensus 52 v~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~g----kg- 126 (324)
+++.-||-| +.+.+|.++..+..+. +.+.++-.- . ....++|++.|+|++.-..- |.
T Consensus 15 i~vl~SG~g--snl~all~~~~~~~~~----------eI~~Vis~~----~--a~~~~~A~~~gIp~~~~~~~~~~~r~~ 76 (215)
T 3da8_A 15 LVVLASGTG--SLLRSLLDAAVGDYPA----------RVVAVGVDR----E--CRAAEIAAEASVPVFTVRLADHPSRDA 76 (215)
T ss_dssp EEEEESSCC--HHHHHHHHHSSTTCSE----------EEEEEEESS----C--CHHHHHHHHTTCCEEECCGGGSSSHHH
T ss_pred EEEEEeCCh--HHHHHHHHHHhccCCC----------eEEEEEeCC----c--hHHHHHHHHcCCCEEEeCcccccchhh
Confidence 444457777 5677787777543221 111111110 0 12478999999999976321 11
Q ss_pred ----c--cc--cCCcEEEEEcCccCCcccccccccCCCCEEEEcCCc
Q 038651 127 ----M--IV--EFADAYIFVESIFNDYSSVGYSLLLNKKAILMQPDR 165 (324)
Q Consensus 127 ----~--~l--~~aDlvl~lG~~~~~~~t~~~~~~~~~~iI~id~d~ 165 (324)
+ .+ .+.|++++.|... .-...+-..++..+|.|++..
T Consensus 77 ~d~~~~~~l~~~~~Dlivlagy~~--iL~~~~l~~~~~~~iNiHpSL 121 (215)
T 3da8_A 77 WDVAITAATAAHEPDLVVSAGFMR--ILGPQFLSRFYGRTLNTHPAL 121 (215)
T ss_dssp HHHHHHHHHHTTCCSEEEEEECCS--CCCHHHHHHHTTTEEEEESSC
T ss_pred hhHHHHHHHHhhCCCEEEEcCchh--hCCHHHHhhccCCeEEeCccc
Confidence 1 22 3789999999532 111111111233377777664
No 108
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=29.32 E-value=1.2e+02 Score=29.92 Aligned_cols=82 Identities=6% Similarity=-0.003 Sum_probs=44.7
Q ss_pred EEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhh-hhCC-------C---C-CCCCCCCHHHHHHHHHHHHH
Q 038651 213 IAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVE-IHDG-------P---Y-NVIENWNYTGLVEAFQNAIE 280 (324)
Q Consensus 213 v~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~-~~~~-------~---~-~~l~~~df~~lA~a~G~al~ 280 (324)
++-.|.+...+ +.-|.+|...++|+++|.-.-.....-+. +|.. + | ..+..+ ..+.+.+--|++
T Consensus 96 ~~TsGpG~~N~--~~~l~~A~~~~vPlvvItg~~p~~~~~~~~~Q~~d~~~~~~~~tk~~~~v~~~--~~i~~~l~~A~~ 171 (616)
T 2pan_A 96 LGTSGPAGTDM--ITALYSASADSIPILCITGQAPRARLHKEDFQAVDIEAIAKPVSKMAVTVREA--ALVPRVLQQAFH 171 (616)
T ss_dssp EECSTHHHHTS--HHHHHHHHHTTCCEEEEEEECCGGGTTTTCTTCCCHHHHHGGGSSEEEECCSG--GGHHHHHHHHHH
T ss_pred EeCCCchHHHH--HHHHHHHHhcCCCEEEEecCCcccccCcccccccCHHHHHHHHHHhhcccCCH--HHHHHHHHHHHH
Confidence 34556554333 25699999999999999998765432211 1110 0 1 112211 123332222555
Q ss_pred HhHHhCCCCeEEEEEEecC
Q 038651 281 TAAVEKKDCLCFIEAIVHK 299 (324)
Q Consensus 281 ~a~~~~~~~p~lIeV~id~ 299 (324)
.|. ....||+.|++..|.
T Consensus 172 ~A~-~~r~GPV~l~iP~d~ 189 (616)
T 2pan_A 172 LMR-SGRPGPVLVDLPFDV 189 (616)
T ss_dssp HHH-SSSCCCEEEEEEHHH
T ss_pred HHh-cCCCceEEEEcchhh
Confidence 453 234689999998763
No 109
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=29.24 E-value=1.4e+02 Score=29.11 Aligned_cols=83 Identities=14% Similarity=0.099 Sum_probs=46.2
Q ss_pred EEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhh-h-hhCC-------CCC----CCCCCCHHHHHHHHHHH
Q 038651 212 VIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEV-E-IHDG-------PYN----VIENWNYTGLVEAFQNA 278 (324)
Q Consensus 212 vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~-~-~~~~-------~~~----~l~~~df~~lA~a~G~a 278 (324)
+++-.|.+...+ +.-+.+|...++|+++|.-.-.....-+ . .|.- +++ .+. +=..+.+.+--|
T Consensus 77 ~~~TsGpG~~N~--~~~v~~A~~~~~Pll~itg~~~~~~~~~~~~~Q~~d~~~~~~~~~k~~~~v~--~~~~~~~~i~~A 152 (573)
T 2iht_A 77 CWATLGPGMTNL--STGIATSVLDRSPVIALAAQSESHDIFPNDTHQCLDSVAIVAPMSKYAVELQ--RPHEITDLVDSA 152 (573)
T ss_dssp EEECTTHHHHHH--HHHHHHHHHHTCCEEEEEEESCGGGCCTTTSTTCCCHHHHHGGGSSEEEECC--SGGGHHHHHHHH
T ss_pred EEEccCchHHHH--HHHHHHHHhhCCCEEEEcccCcccccCCcCccccCCHHHHHHhHhhEEEEcC--CHHHHHHHHHHH
Confidence 445556655433 3669999999999999998876554322 1 1110 011 111 111222222225
Q ss_pred HHHhHHhCCCCeEEEEEEecC
Q 038651 279 IETAAVEKKDCLCFIEAIVHK 299 (324)
Q Consensus 279 l~~a~~~~~~~p~lIeV~id~ 299 (324)
++.|. ....||+.|++..|-
T Consensus 153 ~~~A~-~~~~GPV~l~iP~dv 172 (573)
T 2iht_A 153 VNAAM-TEPVGPSFISLPVDL 172 (573)
T ss_dssp HHHHT-BSSCCCEEEEEEHHH
T ss_pred HHHHh-cCCCceEEEEecchH
Confidence 55553 234589999998764
No 110
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=29.05 E-value=1.3e+02 Score=26.50 Aligned_cols=92 Identities=14% Similarity=-0.109 Sum_probs=50.3
Q ss_pred CeEeecCchHHHHHHHHHHhhh--cCceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh--------------------
Q 038651 26 SRDVGCCNELNAGYAADGSARA--RAVGAYVVTFIVGRLSIINAIAGAYSENFPAATITA-------------------- 83 (324)
Q Consensus 26 i~~i~~rhE~~A~~aAdgYaR~--tg~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~-------------------- 83 (324)
++++.+-.+....-+...+.++ .++-+++...+...+..+ ..-+...++|+|...+
T Consensus 44 ~~l~~~d~~~~~~~~~~~~~~l~~~~v~~iig~~~s~~~~~~--~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~ 121 (356)
T 3ipc_A 44 IKIVLGDDVSDPKQGISVANKFVADGVKFVVGHANSGVSIPA--SEVYAENGILEITPAATNPVFTERGLWNTFRTCGRD 121 (356)
T ss_dssp EEEEEEECTTCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHH--HHHHHTTTCEEEESSCCCGGGGSSCCTTEEESSCCH
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHCCCcEEEcCCCcHHHHHH--HHHHHhCCCeEEecCCCCcHhhcCCCCcEEEecCCh
Confidence 6777665555555555555554 344334433333322222 2333456899987421
Q ss_pred -----------hh--cCCCcEEEECCCCCccchHHHHHHHHHHhCCcEE
Q 038651 84 -----------LL--KAVKPAMIGGPKLSVSKATIAFVELADACGYAFA 119 (324)
Q Consensus 84 -----------L~--~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~ 119 (324)
+. ..||..++.+.........+.+++..++.|+.++
T Consensus 122 ~~~~~~~~~~l~~~~g~~~iaii~~~~~~~~~~~~~~~~~l~~~g~~v~ 170 (356)
T 3ipc_A 122 DQQGGIAGKYLADHFKDAKVAIIHDKTPYGQGLADETKKAANAAGVTEV 170 (356)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEECSSHHHHHHHHHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEeCCChHHHHHHHHHHHHHHHcCCEEE
Confidence 22 4678888876543323345567777778888764
No 111
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=29.02 E-value=1e+02 Score=27.30 Aligned_cols=95 Identities=8% Similarity=0.024 Sum_probs=59.1
Q ss_pred CCeEeecCchHHHHHHHHHHhhhcC--ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhhhhcCCCcEEEECCCCCccc
Q 038651 25 GSRDVGCCNELNAGYAADGSARARA--VGAYVVTFIVGRLSIINAIAGAYSENFPAATITALLKAVKPAMIGGPKLSVSK 102 (324)
Q Consensus 25 ~i~~i~~rhE~~A~~aAdgYaR~tg--~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~L~~AkrPvIl~G~g~~~~~ 102 (324)
|.+|...|.|..... .+... .-++++..|.+..|+..-+..+... ..+..++.|.+..
T Consensus 136 G~~Y~~lR~eF~~~~-----~~~r~~~~~ILv~~GG~d~~~l~~~vl~~L~~------------~~~i~vv~G~~~~--- 195 (282)
T 3hbm_A 136 GFSYALIREEFYQEA-----KENRKKKYDFFICMGGTDIKNLSLQIASELPK------------TKIISIATSSSNP--- 195 (282)
T ss_dssp SGGGCCCCHHHHHHT-----TCCCCCCEEEEEECCSCCTTCHHHHHHHHSCT------------TSCEEEEECTTCT---
T ss_pred CCcccccCHHHHHhh-----hhccccCCeEEEEECCCchhhHHHHHHHHhhc------------CCCEEEEECCCch---
Confidence 688888898864320 11222 3566666677777776666666543 2357788888864
Q ss_pred hHHHHHHHHHHhCCcEEecCCCCCc--cccCCcEEEEEcC
Q 038651 103 ATIAFVELADACGYAFAVMPSAKGM--IVEFADAYIFVES 140 (324)
Q Consensus 103 a~~~l~~lae~l~~Pv~tt~~gkg~--~l~~aDlvl~lG~ 140 (324)
..+++.++++... .+-....-..+ +++.||++|+-|.
T Consensus 196 ~~~~l~~~~~~~~-~v~v~~~~~~m~~~m~~aDlvI~~gG 234 (282)
T 3hbm_A 196 NLKKLQKFAKLHN-NIRLFIDHENIAKLMNESNKLIISAS 234 (282)
T ss_dssp THHHHHHHHHTCS-SEEEEESCSCHHHHHHTEEEEEEESS
T ss_pred HHHHHHHHHhhCC-CEEEEeCHHHHHHHHHHCCEEEECCc
Confidence 4567777776532 23222233344 8899999999775
No 112
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=28.13 E-value=81 Score=30.62 Aligned_cols=81 Identities=6% Similarity=-0.045 Sum_probs=46.3
Q ss_pred EEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhh-hhh-------CCCCC----CCCCCCHHHHHHHHHHHH
Q 038651 212 VIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEV-EIH-------DGPYN----VIENWNYTGLVEAFQNAI 279 (324)
Q Consensus 212 vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~-~~~-------~~~~~----~l~~~df~~lA~a~G~al 279 (324)
+++-.|.+...+ +.-+.+|...++|+++|.-.-....+-+ .+| -++++ .+..+ ..+.+.+--|+
T Consensus 70 ~~~TsGpG~~N~--~~gi~~A~~~~vPvl~itg~~~~~~~~~~~~Q~~d~~~~~~~~tk~~~~v~~~--~~~~~~i~~A~ 145 (549)
T 3eya_A 70 CAGSCGPGNLHL--INGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFRECSHYCELVSSP--EQIPQVLAIAM 145 (549)
T ss_dssp EEECTTHHHHTT--HHHHHHHHHTTCCEEEEEEESCGGGTTSCCTTCCCHHHHTSTTCSEEEECCSG--GGHHHHHHHHH
T ss_pred EEeCCCCcHhhh--HHHHHHHHhhCCCEEEEeCCCchhhcCCCCCCccCHHHHHhhhhheEEEeCCH--HHHHHHHHHHH
Confidence 445556655433 2569999999999999998754432211 111 01111 12222 23444443366
Q ss_pred HHhHHhCCCCeEEEEEEec
Q 038651 280 ETAAVEKKDCLCFIEAIVH 298 (324)
Q Consensus 280 ~~a~~~~~~~p~lIeV~id 298 (324)
+.|. ...||+.|+|..|
T Consensus 146 ~~A~--~~~GPV~l~iP~d 162 (549)
T 3eya_A 146 RKAV--LNRGVSVVVLPGD 162 (549)
T ss_dssp HHHH--HTTSEEEEEEEHH
T ss_pred HHHh--hCCCCEEEEeChh
Confidence 6664 3569999999875
No 113
>3aek_A Light-independent protochlorophyllide reductase S; iron/sulfur cluster, oxidoreductase, bacteriochlorophyll biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus} PDB: 3aeq_A* 3aes_A* 3aer_A* 3aet_A 3aeu_A
Probab=28.08 E-value=1.1e+02 Score=28.93 Aligned_cols=54 Identities=15% Similarity=0.158 Sum_probs=41.6
Q ss_pred CCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc----cccCCcEEEEEcCcc
Q 038651 87 AVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM----IVEFADAYIFVESIF 142 (324)
Q Consensus 87 AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~----~l~~aDlvl~lG~~~ 142 (324)
.++-|-++|. . ..+...+++++.+++|+.|...+.+..+ .+.+|++-|+++...
T Consensus 182 ~~~~VNilG~-~-~~~~~~eik~lL~~~Gi~v~~~~~~~~~~ei~~~~~A~~niv~~~~~ 239 (437)
T 3aek_A 182 EAAELIVVGA-L-PDVVEDQCLSLLTQLGVGPVRMLPARRSDIEPAVGPNTRFILAQPFL 239 (437)
T ss_dssp CCCCEEEESC-C-CHHHHHHHHHHHHHTTCCCEEEESCSSGGGCCCBCTTCEEEESSTTC
T ss_pred CCCcEEEEeC-C-ChhHHHHHHHHHHHcCCceEEEcCCCCHHHHHhhhcCcEEEEECccH
Confidence 3566888886 3 3333389999999999999987776665 677999999998644
No 114
>2f9i_A Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}
Probab=27.27 E-value=88 Score=28.59 Aligned_cols=93 Identities=13% Similarity=0.019 Sum_probs=50.0
Q ss_pred HHHhhhcCc--eEEEEeCCc----------------chHHHHHHHHHHhhcCCcchhhhhhhcCCCcEEEECCCCCcc--
Q 038651 42 DGSARARAV--GAYVVTFIV----------------GRLSIINAIAGAYSENFPAATITALLKAVKPAMIGGPKLSVS-- 101 (324)
Q Consensus 42 dgYaR~tg~--gv~~~t~Gp----------------G~~N~~tgla~A~~d~~Pvl~It~L~~AkrPvIl~G~g~~~~-- 101 (324)
.|++|+.|. +|+.--.|. |.--+.-.+--|-..+.|+|.+.--..+ +| |.+.-..
T Consensus 109 ~G~gri~G~~V~Via~d~~~~~~~~~~~~~G~~~~~~~~Ka~r~~~~A~~~~~PlI~lvdt~Ga-~~----g~~ae~~g~ 183 (327)
T 2f9i_A 109 GGIGFLNGRAVTVIGQQRGKDTKDNIYRNFGMAHPEGYRKALRLMKQAEKFNRPIFTFIDTKGA-YP----GKAAEERGQ 183 (327)
T ss_dssp EEEEEETTEEEEEEEECCCSSHHHHHHTGGGCCCHHHHHHHHHHHHHHHHTTCCEEEEEEESCS-CC----CHHHHHTTH
T ss_pred EEEEEECCEEEEEEEEcCCCchhhhhhhhcCCCCHHHHHHHHHHHHHHhhcCCCEEEEEeCCCC-Cc----chhhhhhhh
Confidence 488999883 333333332 3444555666667777887765310000 00 1110000
Q ss_pred -chHHHHHHHHHHhCCcEEecCCCCCc-----cccCCcEEEEEc
Q 038651 102 -KATIAFVELADACGYAFAVMPSAKGM-----IVEFADAYIFVE 139 (324)
Q Consensus 102 -~a~~~l~~lae~l~~Pv~tt~~gkg~-----~l~~aDlvl~lG 139 (324)
.....+..-...+..|+++...|++. .+..||++++.=
T Consensus 184 ~~~~a~~l~al~~~~vPvIavV~G~a~GGGa~~~~~~D~via~~ 227 (327)
T 2f9i_A 184 SESIATNLIEMASLKVPVIAIVIGEGGSGGALGIGIANKVLMLE 227 (327)
T ss_dssp HHHHHHHHHHHHTCSSCEEEEEEEEEBHHHHHTTCCCSEEEEET
T ss_pred HHHHHHHHHHHHhCCCCEEEEEECCcChHHHHHHHCCCEEEEcC
Confidence 11112222234568999999888766 555699999864
No 115
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=27.11 E-value=72 Score=30.29 Aligned_cols=56 Identities=9% Similarity=-0.059 Sum_probs=38.6
Q ss_pred EeCCcchHHHHHHHHHHhhcCCcchhhhhhhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecC
Q 038651 55 VTFIVGRLSIINAIAGAYSENFPAATITALLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMP 122 (324)
Q Consensus 55 ~t~GpG~~N~~tgla~A~~d~~Pvl~It~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~ 122 (324)
...|.|=|.+++.|+..+.. +. +.++++.....+..+.+++..+++..|+||+...
T Consensus 106 G~~GvGKTTla~~La~~l~~-----------~G-~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~ 161 (432)
T 2v3c_C 106 GIQGSGKTTTAAKLARYIQK-----------RG-LKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDE 161 (432)
T ss_dssp CCSSSSTTHHHHHHHHHHHH-----------HH-CCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCS
T ss_pred CCCCCCHHHHHHHHHHHHHH-----------cC-CeEEEEeccccCchHHHHHHHhhhccCcceEecC
Confidence 45677778888888877642 12 3344444455556677788889999999999754
No 116
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=26.72 E-value=1.1e+02 Score=30.71 Aligned_cols=83 Identities=11% Similarity=0.132 Sum_probs=46.7
Q ss_pred eEEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhhhh-hhC-------CC---C-CCCCCCCHHHHHHHHHHH
Q 038651 211 AVIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIEVE-IHD-------GP---Y-NVIENWNYTGLVEAFQNA 278 (324)
Q Consensus 211 ~vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~~~-~~~-------~~---~-~~l~~~df~~lA~a~G~a 278 (324)
++++-.|.+...+ +.-|.+|...++|+++|.-.-....+-+. +|. ++ | ..+..+ ..+.+.+--|
T Consensus 148 vv~~TsGpG~~N~--~~gia~A~~d~vPllvItG~~~~~~~g~~a~Q~~Dq~~i~~~~tk~~~~v~~~--~~i~~~i~~A 223 (677)
T 1t9b_A 148 VVLVTSGPGATNV--VTPMADAFADGIPMVVFTGQVPTSAIGTDAFQEADVVGISRSCTKWNVMVKSV--EELPLRINEA 223 (677)
T ss_dssp EEEECSTHHHHTT--HHHHHHHHHHTCCEEEEEEECCTTTTTSCCTTCCCHHHHTGGGSSEEEECCSG--GGHHHHHHHH
T ss_pred EEEECCChHHHHH--HHHHHHHHHcCCCEEEEeCCCChhhcCCCCccccCHHHHhhhheeEEEEcCCH--HHHHHHHHHH
Confidence 3444556554433 36699999999999999987655432211 110 01 1 112222 2344444335
Q ss_pred HHHhHHhCCCCeEEEEEEec
Q 038651 279 IETAAVEKKDCLCFIEAIVH 298 (324)
Q Consensus 279 l~~a~~~~~~~p~lIeV~id 298 (324)
++.|. ....||++|++..|
T Consensus 224 ~~~A~-~grpGPV~l~lP~D 242 (677)
T 1t9b_A 224 FEIAT-SGRPGPVLVDLPKD 242 (677)
T ss_dssp HHHHH-SSSCCEEEEEEEHH
T ss_pred HHHHh-hCCCceEEEEcCHH
Confidence 65553 24578999999944
No 117
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=26.04 E-value=1.4e+02 Score=25.45 Aligned_cols=53 Identities=8% Similarity=0.065 Sum_probs=37.9
Q ss_pred CCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc-------cccCCcEEEEEcCccC
Q 038651 88 VKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM-------IVEFADAYIFVESIFN 143 (324)
Q Consensus 88 krPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~-------~l~~aDlvl~lG~~~~ 143 (324)
..-++++|.- ..+.+.+.++|++.|++.++.-.=.|. .+..-|+|+++..+-+
T Consensus 68 ~~~iLfVgTk---~~~~~~V~~~A~~~g~~~v~~rwlgG~LTN~~~~~f~~PdlliV~Dp~~e 127 (208)
T 1vi6_A 68 PSKILLVAAR---QYAHKPVQMFSKVVGSDYIVGRFIPGTLTNPMLSEYREPEVVFVNDPAID 127 (208)
T ss_dssp GGGEEEEECS---GGGHHHHHHHHHHHCCEEEESSCCTTTTTCTTSTTCCCCSEEEESCTTTT
T ss_pred CCEEEEEeCC---HHHHHHHHHHHHHhCCeeecCEECCCcccChhhHhhCCCCEEEEECCCcc
Confidence 3457777763 467889999999999999875433343 3457888888876653
No 118
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=25.62 E-value=96 Score=27.61 Aligned_cols=61 Identities=10% Similarity=-0.062 Sum_probs=41.8
Q ss_pred ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhhhhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEec
Q 038651 50 VGAYVVTFIVGRLSIINAIAGAYSENFPAATITALLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVM 121 (324)
Q Consensus 50 ~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt 121 (324)
+-+++...|.|=|-++..|+..+.. ...+-|.+++....+..+.+++..+++..|+|+...
T Consensus 107 vi~lvG~~GsGKTTl~~~LA~~l~~-----------~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~ 167 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLAAISML-----------EKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVC 167 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH-----------TTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-----------hcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEec
Confidence 3344567788888888888887752 112334455555556678889999999999987643
No 119
>3qbe_A 3-dehydroquinate synthase; shikimate pathway, mycobacte tuberculosis, nicotinamide adenine dinucleotide (NAD)-depen enzyme; 2.07A {Mycobacterium tuberculosis} PDB: 3qbd_A
Probab=25.53 E-value=71 Score=29.72 Aligned_cols=53 Identities=15% Similarity=0.092 Sum_probs=36.2
Q ss_pred CCCcEEEECCCCCccchHHHHHHHHHHhCCcEEe-cC-CCC---Cc---------c----ccCCcEEEEEcCc
Q 038651 87 AVKPAMIGGPKLSVSKATIAFVELADACGYAFAV-MP-SAK---GM---------I----VEFADAYIFVESI 141 (324)
Q Consensus 87 AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~t-t~-~gk---g~---------~----l~~aDlvl~lG~~ 141 (324)
.+|++|+.+.++.. ..+.+.+..+..|+.+.. .. .+. .. + +..+|+||++|..
T Consensus 43 ~~rvlIVtd~~v~~--~~~~v~~~L~~~g~~~~~~~~~~gE~~kt~~~v~~~~~~l~~~~~~r~d~IIavGGG 113 (368)
T 3qbe_A 43 RHKVAVVHQPGLAE--TAEEIRKRLAGKGVDAHRIEIPDAEAGKDLPVVGFIWEVLGRIGIGRKDALVSLGGG 113 (368)
T ss_dssp CSEEEEEECGGGHH--HHHHHHHHHHHTTCEEEEEECCSGGGGGBHHHHHHHHHHHHHHTCCTTCEEEEEESH
T ss_pred CCEEEEEECccHHH--HHHHHHHHHHhcCCcceEEEeCCCCCCCCHHHHHHHHHHHHHcCCCCCcEEEEECCh
Confidence 38999999998764 367788877888888643 22 222 22 1 3457999999965
No 120
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=25.41 E-value=55 Score=27.28 Aligned_cols=32 Identities=13% Similarity=0.116 Sum_probs=24.2
Q ss_pred CCcEEEECCCCCccchHHHHHHHHHHhCCcEEe
Q 038651 88 VKPAMIGGPKLSVSKATIAFVELADACGYAFAV 120 (324)
Q Consensus 88 krPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~t 120 (324)
++++|.+++..- ++...--+.||++||+|++.
T Consensus 5 ~~~iI~i~g~~G-sGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 5 KQIIIAIGREFG-SGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp -CCEEEEEECTT-SSHHHHHHHHHHHTTCCEEC
T ss_pred CCeEEEEeCCCC-CCHHHHHHHHHHHhCcCEEC
Confidence 467777776543 56777788899999999995
No 121
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=24.95 E-value=46 Score=26.83 Aligned_cols=57 Identities=11% Similarity=0.038 Sum_probs=34.1
Q ss_pred hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc-----cccCCcEEEEEcCc
Q 038651 84 LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM-----IVEFADAYIFVESI 141 (324)
Q Consensus 84 L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~-----~l~~aDlvl~lG~~ 141 (324)
|.++++-++++|.|.... ....+.....++|.++......... .+.+-|++|++-.+
T Consensus 45 i~~a~~~I~i~G~G~S~~-~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~d~vI~iS~s 106 (183)
T 2xhz_A 45 MFWCKGKVVVMGMGASGH-IGRKMAATFASTGTPSFFVHPGEAAHGDLGMVTPQDVVIAISNS 106 (183)
T ss_dssp HHTCSSCEEEEECHHHHH-HHHHHHHHHHTTTCCEEECCTTHHHHHTSTTCCTTCEEEEECSS
T ss_pred HHhCCCeEEEEeecHHHH-HHHHHHHHHHhcCceEEEeCchHHhhhhhccCCCCCEEEEEeCC
Confidence 677776899999987543 3334444445578887654322111 34566777777543
No 122
>2xws_A Sirohydrochlorin cobaltochelatase; lyase, beta-alpha-beta, cobalamin biosynthesis, metal-bindin parallel beta sheet; 1.60A {Archaeoglobus fulgidus} PDB: 2dj5_A* 2xwq_A
Probab=24.70 E-value=49 Score=25.33 Aligned_cols=37 Identities=8% Similarity=-0.066 Sum_probs=25.9
Q ss_pred CCcEEEECCCCCccchHHHHHHHHHHhC-----CcEEecCCC
Q 038651 88 VKPAMIGGPKLSVSKATIAFVELADACG-----YAFAVMPSA 124 (324)
Q Consensus 88 krPvIl~G~g~~~~~a~~~l~~lae~l~-----~Pv~tt~~g 124 (324)
+..+|++|.|.+...+.+.+.++++++. .+|...++.
T Consensus 3 ~~alllv~HGS~~~~~~~~~~~la~~l~~~~~~~~V~~a~le 44 (133)
T 2xws_A 3 RRGLVIVGHGSQLNHYREVMELHRKRIEESGAFDEVKIAFAA 44 (133)
T ss_dssp CEEEEEEECSCCCHHHHHHHHHHHHHHHHHTSSSEEEEEESS
T ss_pred cceEEEEECCCCCHHHHHHHHHHHHHHHhhCCCCcEEeeeee
Confidence 4679999999987667667777776652 567554443
No 123
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=24.30 E-value=59 Score=29.79 Aligned_cols=55 Identities=15% Similarity=0.078 Sum_probs=40.0
Q ss_pred CeEeec-CchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhh---------cCCcchhh
Q 038651 26 SRDVGC-CNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYS---------ENFPAATI 81 (324)
Q Consensus 26 i~~i~~-rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~---------d~~Pvl~I 81 (324)
=|++.+ -.|+++..+|-|+|.. | ..++..|++....-+.--|-.+.. -+.||+++
T Consensus 62 ~r~~d~gIaE~~~v~~a~G~A~~-G~rp~~~~~f~~F~~~a~dqi~~~~a~~~y~~~g~~~~pvv~~ 127 (341)
T 2ozl_B 62 KRIIDTPISEMGFAGIAVGAAMA-GLRPICEFMTFNFSMQAIDQVINSAAKTYYMSGGLQPVPIVFR 127 (341)
T ss_dssp TTEEECCSCHHHHHHHHHHHHHT-TCEEEEECSSGGGGGGGHHHHHTTTTTHHHHTTSSCCCCCEEE
T ss_pred CcEEECchhHHHHHHHHHHHHHC-CCEEEEEeccHHHHHHHHHHHHHHHHHHHhhccccCCCCEEEE
Confidence 488888 5999999999999987 6 666656888887555555543222 56677654
No 124
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=23.79 E-value=54 Score=29.67 Aligned_cols=55 Identities=22% Similarity=0.193 Sum_probs=39.6
Q ss_pred CeEeecC-chHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHH--H---hh----cCCcchhh
Q 038651 26 SRDVGCC-NELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAG--A---YS----ENFPAATI 81 (324)
Q Consensus 26 i~~i~~r-hE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~--A---~~----d~~Pvl~I 81 (324)
-|++.+- .|+++..+|-|+|.. | ..++..|++++..-+.--|-. | |. -++||+++
T Consensus 50 ~r~~~~gIaE~~~v~~a~G~A~~-G~rp~~~~t~~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~ 115 (324)
T 1w85_B 50 DRVFDTPLAESGIGGLAIGLALQ-GFRPVPEIQFFGFVYEVMDSICGQMARIRYRTGGRYHMPITIR 115 (324)
T ss_dssp TTEEECCSCHHHHHHHHHHHHHT-TCEEEEBCSSGGGGGGTHHHHHTTGGGHHHHTTTSSCCCCEEE
T ss_pred CcEEEcchhHHHHHHHHHHHHhC-CCEEEEEecchhHHHHHHHHHHHHHHHHhhhccCCCcCCEEEE
Confidence 4788765 999999999999987 7 566656899987555555532 2 22 57787765
No 125
>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*
Probab=23.69 E-value=73 Score=32.71 Aligned_cols=53 Identities=11% Similarity=-0.080 Sum_probs=34.4
Q ss_pred CcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCC-----C---c---cccCCcEEEEEcCccC
Q 038651 89 KPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAK-----G---M---IVEFADAYIFVESIFN 143 (324)
Q Consensus 89 rPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gk-----g---~---~l~~aDlvl~lG~~~~ 143 (324)
+..++.|+... ....-.+.+|++.+|.+.+...... + . -+++||+||++| .+.
T Consensus 340 ~i~~~~s~~~t-~E~~~~~~kl~~~lGt~n~d~~~~~~~~~~~~~~~~~~di~~ad~Il~~G-Np~ 403 (783)
T 3i9v_3 340 EVGLYLAHDAT-LEEGLLASELAKALKTPHLDFQGRTAAPASLFPPASLEDLLQADFALVLG-DPT 403 (783)
T ss_dssp SEEEEECTTCC-TTHHHHHHHHHHHTTCSCEEETTCCSSCGGGSCBCCHHHHHHCSCEEEES-CHH
T ss_pred CEEEEECCCCC-HHHHHHHHHHHHHhCCCcccCCchhhhhhccCCCCCHHHHhhCCEEEEeC-Chh
Confidence 45555555443 2344578899999998876543111 1 1 457999999999 764
No 126
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A {Coxiella burnetii}
Probab=22.98 E-value=1.2e+02 Score=27.51 Aligned_cols=36 Identities=17% Similarity=0.003 Sum_probs=26.6
Q ss_pred HHHHHHHHhCCcEEecCCCCCc----cc--cCCcEEEEEcCc
Q 038651 106 AFVELADACGYAFAVMPSAKGM----IV--EFADAYIFVESI 141 (324)
Q Consensus 106 ~l~~lae~l~~Pv~tt~~gkg~----~l--~~aDlvl~lG~~ 141 (324)
.+.++|+++|+||+....-++- .+ .+.|+++++|..
T Consensus 49 ~v~~~A~~~gIpv~~~~~~~~~~~~~~l~~~~~Dliv~~~~~ 90 (314)
T 3tqq_A 49 PVKEIARQNEIPIIQPFSLRDEVEQEKLIAMNADVMVVVAYG 90 (314)
T ss_dssp HHHHHHHHTTCCEECCSCSSSHHHHHHHHTTCCSEEEEESCC
T ss_pred HHHHHHHHcCCCEECcccCCCHHHHHHHHhcCCCEEEEcCcc
Confidence 5889999999999864333332 22 478999999964
No 127
>2m1z_A LMO0427 protein; homolog PTS system IIB component, transferase; NMR {Listeria monocytogenes egd-e}
Probab=22.93 E-value=50 Score=25.18 Aligned_cols=67 Identities=16% Similarity=0.134 Sum_probs=44.1
Q ss_pred ECCCCCccc-hHHHHHHHHHHhCCcEEe-cCCCCCc-------cccCCcEEEEEcCcc-CCcccccccccCCCCEEEEcC
Q 038651 94 GGPKLSVSK-ATIAFVELADACGYAFAV-MPSAKGM-------IVEFADAYIFVESIF-NDYSSVGYSLLLNKKAILMQP 163 (324)
Q Consensus 94 ~G~g~~~~~-a~~~l~~lae~l~~Pv~t-t~~gkg~-------~l~~aDlvl~lG~~~-~~~~t~~~~~~~~~~iI~id~ 163 (324)
++.|+..+- +.+.|++.|+++|+.+-. |....|+ .+++||+||+....- .+. ..|..++++++++
T Consensus 11 CptGiAhTymAAeaLekaA~~~G~~ikVEtqgs~g~~n~Lt~~~I~~AD~VIia~d~~v~~~-----~RF~gk~v~~~~v 85 (106)
T 2m1z_A 11 CATGVAHTYMAAQALKKGAKKMGNLIKVETQGATGIENELTEKDVNIGEVVIFAVDTKVRNK-----ERFDGKVVLEVPV 85 (106)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHHTCEEEEEEEETTEESSCCCHHHHHHCSEEEEEESSCCSTH-----HHHTTSEEEEECT
T ss_pred CCCcHHHHHHHHHHHHHHHHHCCCEEEEEEecCccccCCCCHHHHhhCCEEEEeccccccch-----hccCCCcEEEEcH
Confidence 566665433 478999999999999875 4334454 668999999987432 111 1122333888887
Q ss_pred Cc
Q 038651 164 DR 165 (324)
Q Consensus 164 d~ 165 (324)
..
T Consensus 86 ~~ 87 (106)
T 2m1z_A 86 SA 87 (106)
T ss_dssp TH
T ss_pred HH
Confidence 75
No 128
>4ds3_A Phosphoribosylglycinamide formyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.85A {Brucella melitensis BV}
Probab=22.91 E-value=3.3e+02 Score=22.91 Aligned_cols=95 Identities=18% Similarity=0.114 Sum_probs=50.1
Q ss_pred EEEEeCCcchHHHHHHHHHHhhcCC-cchhhhhhhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCC----CCC
Q 038651 52 AYVVTFIVGRLSIINAIAGAYSENF-PAATITALLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPS----AKG 126 (324)
Q Consensus 52 v~~~t~GpG~~N~~tgla~A~~d~~-Pvl~It~L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~----gkg 126 (324)
+++.-+|-| +.+.++.++..++. |. +.+.++-.- .++. ..++|++.|+|++.-.. .|.
T Consensus 10 i~vl~SG~g--snl~all~~~~~~~l~~----------~I~~Visn~---~~a~--~l~~A~~~gIp~~~~~~~~~~~r~ 72 (209)
T 4ds3_A 10 VVIFISGGG--SNMEALIRAAQAPGFPA----------EIVAVFSDK---AEAG--GLAKAEAAGIATQVFKRKDFASKE 72 (209)
T ss_dssp EEEEESSCC--HHHHHHHHHHTSTTCSE----------EEEEEEESC---TTCT--HHHHHHHTTCCEEECCGGGSSSHH
T ss_pred EEEEEECCc--HHHHHHHHHHHcCCCCc----------EEEEEEECC---cccH--HHHHHHHcCCCEEEeCccccCCHH
Confidence 344457777 56778888876642 21 112222111 1111 15899999999997432 221
Q ss_pred -----c--cc--cCCcEEEEEcCccCCcccccccccCCCCEEEEcCCc
Q 038651 127 -----M--IV--EFADAYIFVESIFNDYSSVGYSLLLNKKAILMQPDR 165 (324)
Q Consensus 127 -----~--~l--~~aDlvl~lG~~~~~~~t~~~~~~~~~~iI~id~d~ 165 (324)
+ .+ .+.|++++.|... .-...+-..++..+|.|++..
T Consensus 73 ~~d~~~~~~l~~~~~Dliv~agy~~--il~~~~l~~~~~~~iNiHpSL 118 (209)
T 4ds3_A 73 AHEDAILAALDVLKPDIICLAGYMR--LLSGRFIAPYEGRILNIHPSL 118 (209)
T ss_dssp HHHHHHHHHHHHHCCSEEEESSCCS--CCCHHHHGGGTTCEEEEESSC
T ss_pred HHHHHHHHHHHhcCCCEEEEecccc--CcCHHHHhhccCCeEEECCcc
Confidence 1 23 3789999999532 111111112233477777664
No 129
>2f9y_A Acetyl-COA carboxylase, carboxyltransferase alpha; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4
Probab=22.25 E-value=1e+02 Score=28.32 Aligned_cols=93 Identities=14% Similarity=0.013 Sum_probs=48.9
Q ss_pred HHHhhhcC-c-eEEEEeCC----------------cchHHHHHHHHHHhhcCCcchhhhhhhcCCCcEEEECCCCCcc--
Q 038651 42 DGSARARA-V-GAYVVTFI----------------VGRLSIINAIAGAYSENFPAATITALLKAVKPAMIGGPKLSVS-- 101 (324)
Q Consensus 42 dgYaR~tg-~-gv~~~t~G----------------pG~~N~~tgla~A~~d~~Pvl~It~L~~AkrPvIl~G~g~~~~-- 101 (324)
.|++|+.| + +|+....| -|.--+.-.+--|-..+.|+|.+.--..+ + .|.+.-..
T Consensus 123 ~G~ari~G~~V~Via~d~~~~~~~~~~~~~G~~~~~~~~Ka~r~~~~A~~~~lPlI~lvDt~Ga-~----~g~~aE~~g~ 197 (339)
T 2f9y_A 123 GGIARLDGRPVMIIGHQKGRETKEKIRRNFGMPAPEGYRKALRLMQMAERFKMPIITFIDTPGA-Y----PGVGAEERGQ 197 (339)
T ss_dssp EEEEEETTEEEEEEEECCCSSTTHHHHTGGGCCCHHHHHHHHHHHHHHHHTTCCEEEEEEESCS-C----CSHHHHHTTH
T ss_pred EEEEEECCEEEEEEEEeCCCchhhhhhhhcCCCCHHHHHHHHHHHHHHhhcCCCEEEEEeCCCC-c----cchHHHHHHH
Confidence 48899988 3 33333322 12344455566666777887765310000 0 01111000
Q ss_pred -chHHHHHHHHHHhCCcEEecCCCCCc-----cccCCcEEEEEc
Q 038651 102 -KATIAFVELADACGYAFAVMPSAKGM-----IVEFADAYIFVE 139 (324)
Q Consensus 102 -~a~~~l~~lae~l~~Pv~tt~~gkg~-----~l~~aDlvl~lG 139 (324)
.....+..-...+..|+++...|++. .+..||++++.=
T Consensus 198 ~~~~a~~l~al~~~~vPvIavV~G~a~GGGa~~~~~~D~via~p 241 (339)
T 2f9y_A 198 SEAIARNLREMSRLGVPVVCTVIGEGGSGGALAIGVGDKVNMLQ 241 (339)
T ss_dssp HHHHHHHHHHHHTCSSCEEEEEEEEEEHHHHHTTCCCSEEEECT
T ss_pred HHHHHHHHHHHHhCCCCEEEEEeCCcCcHHHHHHhccCeeeecC
Confidence 11112222234568999999888765 555699988853
No 130
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=22.24 E-value=2.2e+02 Score=27.46 Aligned_cols=82 Identities=7% Similarity=0.052 Sum_probs=46.3
Q ss_pred EEEecCchHHhhhHHHHHHHHHHhCCCeEEEEEeCCchhhh--h-hhhC-------C---CC-CCCCCCCHHHHHHHHHH
Q 038651 212 VIAETGDSWFNCQKDVDVSTMLRCEQKNIIFLINNGNYTIE--V-EIHD-------G---PY-NVIENWNYTGLVEAFQN 277 (324)
Q Consensus 212 vv~d~G~~~~~~~~~qEL~Ta~r~~lpviivV~NN~~yg~~--~-~~~~-------~---~~-~~l~~~df~~lA~a~G~ 277 (324)
+++-.|.+...+ +.-+.+|...++|+++|.-.-...... + .+|. + .| ..+..++ .+.+.+--
T Consensus 74 ~~~TsGpG~~N~--~~gi~~A~~~~vPll~itg~~~~~~~~~~~~~~Q~~dq~~~~~~~tk~~~~v~~~~--~~~~~i~~ 149 (564)
T 2q28_A 74 CLTVSAPGFLNG--LTALANATVNGFPMIMISGSSDRAIVDLQQGDYEELDQMNAAKPYAKAAFRVNQPQ--DLGIALAR 149 (564)
T ss_dssp EEECSHHHHHHH--HHHHHHHHHHTCCEEEEEEECCHHHHHTTSCCTTCCCHHHHHGGGSSEEEECCSGG--GHHHHHHH
T ss_pred EEEccCchHHHH--HHHHHHHHhcCCCEEEEeCCCCccccCCCCCccccccHHHHHHHhhheeeecCCHH--HHHHHHHH
Confidence 444445544333 366999999999999999976544222 0 1110 0 11 1122222 23333333
Q ss_pred HHHHhHHhCCCCeEEEEEEec
Q 038651 278 AIETAAVEKKDCLCFIEAIVH 298 (324)
Q Consensus 278 al~~a~~~~~~~p~lIeV~id 298 (324)
|++.|. ....||+.|+|..|
T Consensus 150 A~~~A~-~~~~GPV~l~iP~d 169 (564)
T 2q28_A 150 AIRVSV-SGRPGGVYLDLPAN 169 (564)
T ss_dssp HHHHHH-SSSCCEEEEEEEHH
T ss_pred HHHHHh-cCCCceEEEEcCHH
Confidence 666664 23679999999988
No 131
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=21.94 E-value=66 Score=32.41 Aligned_cols=54 Identities=15% Similarity=-0.001 Sum_probs=37.6
Q ss_pred CeEeec-CchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHHHhhcCCcchh
Q 038651 26 SRDVGC-CNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAGAYSENFPAAT 80 (324)
Q Consensus 26 i~~i~~-rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~ 80 (324)
=|++.+ --|++++.+|-|+|...| ..++ .|+.+.++-+...|-.+-..+.||++
T Consensus 402 ~R~id~GIaE~~~v~~a~GlA~~gG~~P~~-~tf~~F~~~~~~~ir~~a~~~lpvv~ 457 (669)
T 2r8o_A 402 GNYIHYGVREFGMTAIANGISLHGGFLPYT-STFLMFVEYARNAVRMAALMKQRQVM 457 (669)
T ss_dssp CSEEECCSCHHHHHHHHHHHHHHSSCEEEE-EEEGGGGGTTHHHHHHHHHTTCCCEE
T ss_pred CCeeecchhHHHHHHHHHHHHHcCCCeEEE-eehHHHHHHHHHHHHHHHhcCCCEEE
Confidence 366664 489999999999999877 6666 57888776666665554444444443
No 132
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=21.72 E-value=59 Score=26.75 Aligned_cols=57 Identities=11% Similarity=0.138 Sum_probs=37.1
Q ss_pred hhcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEecCCCCCc-----cccCCcEEEEEcCc
Q 038651 84 LLKAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVMPSAKGM-----IVEFADAYIFVESI 141 (324)
Q Consensus 84 L~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt~~gkg~-----~l~~aDlvl~lG~~ 141 (324)
|.+|++-+.++|.|.... ....+.....++|.|+......--. .+.+-|++|++-.+
T Consensus 41 i~~a~~~I~i~G~G~S~~-~A~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~dvvI~iS~s 102 (201)
T 3fxa_A 41 IAECTGKIVVAGCGTSGV-AAKKLVHSFNCIERPAVFLTPSDAVHGTLGVLQKEDILILISKG 102 (201)
T ss_dssp HHHCSSCEEEECCTHHHH-HHHHHHHHHHHTTCCEEECCHHHHTTTGGGGCCTTCEEEEECSS
T ss_pred HHhcCCcEEEEEecHHHH-HHHHHHHHHHhcCCcEEEeCchHHHhhhhhcCCCCCEEEEEeCC
Confidence 778876789999987643 3445555556689998764321101 46677998888543
No 133
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=21.51 E-value=78 Score=28.55 Aligned_cols=55 Identities=18% Similarity=0.059 Sum_probs=38.5
Q ss_pred CeEeec-CchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHH--H---hh----cCCcchhh
Q 038651 26 SRDVGC-CNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAG--A---YS----ENFPAATI 81 (324)
Q Consensus 26 i~~i~~-rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~--A---~~----d~~Pvl~I 81 (324)
=|++.+ -.|+++..+|-|+|.. | ..++..|++++..-+.-.|-. | |. -++|++++
T Consensus 51 ~r~~~~gIaE~~~v~~a~G~A~~-G~~p~~~~t~~~F~~~a~dqi~~~~a~~~~~~~g~~~~pvv~~ 116 (324)
T 1umd_B 51 DRVMDTPLSEAAIVGAALGMAAH-GLRPVAEIQFADYIFPGFDQLVSQVAKLRYRSGGQFTAPLVVR 116 (324)
T ss_dssp TTEEECCSCHHHHHHHHHHHHHH-TCEEEEECSSGGGCGGGHHHHHHTTTTHHHHTTTSSCCCCEEE
T ss_pred CcEEECchhHHHHHHHHHHHHHC-CCEEEEEeccHhHHHHHHHHHHHHHHHHHhhcCCCCcCCEEEE
Confidence 367766 9999999999999987 7 566656899887555444432 2 11 56777654
No 134
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=21.27 E-value=98 Score=29.04 Aligned_cols=55 Identities=16% Similarity=0.170 Sum_probs=37.7
Q ss_pred cCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEe--cCCC---CCc--------c-----ccCCcEEEEEcCc
Q 038651 86 KAVKPAMIGGPKLSVSKATIAFVELADACGYAFAV--MPSA---KGM--------I-----VEFADAYIFVESI 141 (324)
Q Consensus 86 ~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~t--t~~g---kg~--------~-----l~~aDlvl~lG~~ 141 (324)
..+|.+|+.+.++... ..+.+.+..+..|+.+.. -+.| |.. . +...|+||++|..
T Consensus 61 ~~~rvlIVtd~~v~~~-~~~~v~~~L~~~g~~~~~~~~~~gE~~kt~~~v~~~~~~l~~~~~~R~d~IIAvGGG 133 (390)
T 3okf_A 61 AKQKVVIVTNHTVAPL-YAPAIISLLDHIGCQHALLELPDGEQYKTLETFNTVMSFLLEHNYSRDVVVIALGGG 133 (390)
T ss_dssp TTCEEEEEEETTTHHH-HHHHHHHHHHHHTCEEEEEEECSSGGGCBHHHHHHHHHHHHHTTCCTTCEEEEEESH
T ss_pred CCCEEEEEECCcHHHH-HHHHHHHHHHHcCCeEEEEEECCCcCCchHHHHHHHHHHHHhcCCCcCcEEEEECCc
Confidence 4689999999988653 677888888888888643 2333 222 1 2234899999975
No 135
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=20.68 E-value=53 Score=30.24 Aligned_cols=52 Identities=19% Similarity=-0.019 Sum_probs=32.9
Q ss_pred CCcEEEECCCCCccchHHHHHHHHHHhCCcEE-ecCCCCCc-----------cccCCcEEEEEcC
Q 038651 88 VKPAMIGGPKLSVSKATIAFVELADACGYAFA-VMPSAKGM-----------IVEFADAYIFVES 140 (324)
Q Consensus 88 krPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~-tt~~gkg~-----------~l~~aDlvl~lG~ 140 (324)
+|++|+.|.++.. ...+.+.+..+..|+.+. .-+.|--. .-.++|+||+||.
T Consensus 32 ~~~livtd~~~~~-~~~~~v~~~L~~~g~~~~~~~~~ge~~~~~v~~~~~~~~~~~~d~IIavGG 95 (370)
T 1jq5_A 32 NKTVVIADEIVWK-IAGHTIVNELKKGNIAAEEVVFSGEASRNEVERIANIARKAEAAIVIGVGG 95 (370)
T ss_dssp SEEEEEECHHHHH-HTHHHHHHHHHTTTCEEEEEECCSSCBHHHHHHHHHHHHHTTCSEEEEEES
T ss_pred CeEEEEEChHHHH-HHHHHHHHHHHHcCCeEEEEeeCCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 7888888877654 456667776676777763 22333211 1246899999986
No 136
>3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum, structural genom 2, protein structure initiative; 1.85A {Chlorobaculum tepidum}
Probab=20.64 E-value=1.1e+02 Score=23.12 Aligned_cols=31 Identities=6% Similarity=-0.004 Sum_probs=21.3
Q ss_pred EEEecCchHHhhhHHHHHHHHHHhCCCeEEE
Q 038651 212 VIAETGDSWFNCQKDVDVSTMLRCEQKNIIF 242 (324)
Q Consensus 212 vv~d~G~~~~~~~~~qEL~Ta~r~~lpviiv 242 (324)
+++|.||.++......++..+.+.++++.++
T Consensus 84 ~l~d~GdP~i~~~~~~l~~~~~~~gi~v~vi 114 (117)
T 3hh1_A 84 LVTDAGTPAISDPGYTMASAAHAAGLPVVPV 114 (117)
T ss_dssp EEEETTSCGGGSTTHHHHHHHHHTTCCEEEE
T ss_pred EEecCCcCeEeccHHHHHHHHHHCCCcEEEe
Confidence 4567899987655434555566788998775
No 137
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=20.60 E-value=2.8e+02 Score=24.31 Aligned_cols=93 Identities=11% Similarity=0.028 Sum_probs=48.9
Q ss_pred CeEeecCchHHHHHHHHHHhhhcC-ceEEEEeCCcchHHHHHHHHH---HhhcCCcchhhhh------------------
Q 038651 26 SRDVGCCNELNAGYAADGSARARA-VGAYVVTFIVGRLSIINAIAG---AYSENFPAATITA------------------ 83 (324)
Q Consensus 26 i~~i~~rhE~~A~~aAdgYaR~tg-~gv~~~t~GpG~~N~~tgla~---A~~d~~Pvl~It~------------------ 83 (324)
++++..-.+....-+...+-++-. -+|..+ .||..+.....++. +...++|+|..+.
T Consensus 47 i~l~~~D~~~~~~~~~~~~~~l~~~~~v~~i-ig~~~s~~~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~~~f~~~~~~ 125 (364)
T 3lop_A 47 IRLVARDDEQKIEQTVRNVRDMARVDNPVAL-LTVVGTANVEALMREGVLAEARLPLVGPATGASSMTTDPLVFPIKASY 125 (364)
T ss_dssp EEEEEEECTTCHHHHHHHHHHHHHHSCEEEE-ECCCCHHHHHHHHHTTHHHHHTCCEESCSCCCGGGGSCTTEECCSCCH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHhhcCcEEE-EecCCCHHHHhhCchhhHHhcCCcEEEcccCcHhhccCCcEEEeCCCh
Confidence 777776655555555555556532 233322 23332333333333 4456899987631
Q ss_pred ----------h--hcCCCcEEEECCCCCccchHHHHHHHHHHhCCcEE
Q 038651 84 ----------L--LKAVKPAMIGGPKLSVSKATIAFVELADACGYAFA 119 (324)
Q Consensus 84 ----------L--~~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~ 119 (324)
| ...||..++.+.........+.+++..++.|++++
T Consensus 126 ~~~~~~~~~~l~~~g~~~iaii~~~~~~g~~~~~~~~~~~~~~G~~v~ 173 (364)
T 3lop_A 126 QQEIDKMITALVTIGVTRIGVLYQEDALGKEAITGVERTLKAHALAIT 173 (364)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEEEETTHHHHHHHHHHHHHHHTTTCCCS
T ss_pred HHHHHHHHHHHHHcCCceEEEEEeCchhhHHHHHHHHHHHHHcCCcEE
Confidence 2 23567777766443222334556666666777654
No 138
>3q0i_A Methionyl-tRNA formyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; 1.89A {Vibrio cholerae}
Probab=20.48 E-value=1.1e+02 Score=27.68 Aligned_cols=36 Identities=17% Similarity=-0.072 Sum_probs=26.1
Q ss_pred HHHHHHHHhCCcEEecCCCCCc----cc--cCCcEEEEEcCc
Q 038651 106 AFVELADACGYAFAVMPSAKGM----IV--EFADAYIFVESI 141 (324)
Q Consensus 106 ~l~~lae~l~~Pv~tt~~gkg~----~l--~~aDlvl~lG~~ 141 (324)
.+.++|+++|+||+....-+.- .+ .++|+++++|..
T Consensus 54 ~v~~~A~~~gIpv~~~~~~~~~~~~~~l~~~~~Dliv~~~y~ 95 (318)
T 3q0i_A 54 PVKTLALEHNVPVYQPENFKSDESKQQLAALNADLMVVVAYG 95 (318)
T ss_dssp HHHHHHHHTTCCEECCSCSCSHHHHHHHHTTCCSEEEESSCC
T ss_pred HHHHHHHHcCCCEEccCcCCCHHHHHHHHhcCCCEEEEeCcc
Confidence 5889999999999864332322 22 478999999964
No 139
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=20.37 E-value=60 Score=30.39 Aligned_cols=52 Identities=6% Similarity=-0.034 Sum_probs=30.7
Q ss_pred CCcEEEECCCC-CccchHHHHHHHHHHhCCcEEecCCC---CCc--------c--ccCCcEEEEEcCc
Q 038651 88 VKPAMIGGPKL-SVSKATIAFVELADACGYAFAVMPSA---KGM--------I--VEFADAYIFVESI 141 (324)
Q Consensus 88 krPvIl~G~g~-~~~~a~~~l~~lae~l~~Pv~tt~~g---kg~--------~--l~~aDlvl~lG~~ 141 (324)
+|++|+.|.+. ...+..+.+.+..+ |+.+..-..+ +.. . -.++|+||+||..
T Consensus 51 ~r~liVtd~~~~~~~g~~~~v~~~L~--g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGG 116 (408)
T 1oj7_A 51 ARVLITYGGGSVKKTGVLDQVLDALK--GMDVLEFGGIEPNPAYETLMNAVKLVREQKVTFLLAVGGG 116 (408)
T ss_dssp CEEEEEECSSHHHHHSHHHHHHHHTT--TSEEEEECCCCSSCBHHHHHHHHHHHHHHTCCEEEEEESH
T ss_pred CEEEEEECCchhhhccHHHHHHHHhC--CCEEEEeCCcCCCcCHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 78899988763 32334555555444 7765432222 111 2 2478999999863
No 140
>1tjn_A Sirohydrochlorin cobaltochelatase; AF0721, APC5049, midwest consortium for structural genomics, structure initiative, A. fulgidus; 2.01A {Archaeoglobus fulgidus} SCOP: c.92.1.3
Probab=20.23 E-value=72 Score=25.54 Aligned_cols=36 Identities=8% Similarity=-0.037 Sum_probs=26.1
Q ss_pred CcEEEECCCCCccchHHHHHHHHHHh----C-CcEEecCCC
Q 038651 89 KPAMIGGPKLSVSKATIAFVELADAC----G-YAFAVMPSA 124 (324)
Q Consensus 89 rPvIl~G~g~~~~~a~~~l~~lae~l----~-~Pv~tt~~g 124 (324)
..+|++|.|.+...+.+.+.++++++ + .||...++.
T Consensus 25 ~avlLv~HGS~~p~~~~~~~~la~~l~~~~~~~~V~~afle 65 (156)
T 1tjn_A 25 RGLVIVGHGSQLNHYREVMELHRKRIEESGAFDEVKIAFAA 65 (156)
T ss_dssp EEEEEEECCTTSTTHHHHHHHHHHHHHHHTSSSEEEEEECS
T ss_pred cCEEEEECCCCCHHHHHHHHHHHHHHHhhCCCCeEEEEEec
Confidence 67999999998767777777777665 2 577655443
No 141
>4gim_A Pseudouridine-5'-phosphate glycosidase; alpha-beta-alpha sandwich fold, hydrolase; HET: PSU; 1.80A {Escherichia coli} PDB: 4gij_A 4gik_A* 4gil_A*
Probab=20.13 E-value=20 Score=32.98 Aligned_cols=94 Identities=10% Similarity=-0.047 Sum_probs=67.5
Q ss_pred EeecCchHHHHHHHH--HHhhhc-C-ceEEEEeCCcchHHHHHHHHHHhhcCCcchhhhh------------------hh
Q 038651 28 DVGCCNELNAGYAAD--GSARAR-A-VGAYVVTFIVGRLSIINAIAGAYSENFPAATITA------------------LL 85 (324)
Q Consensus 28 ~i~~rhE~~A~~aAd--gYaR~t-g-~gv~~~t~GpG~~N~~tgla~A~~d~~Pvl~It~------------------L~ 85 (324)
.|+--.|+---++-. +-.|++ + ++.++..-.-|+|-.-.-+.-|...+++|.+.-+ ..
T Consensus 96 ~vGL~~~ele~la~~~~~v~K~SrRDl~~~~a~~~~GaTTVaaTm~lA~~AGI~VFaTGGIGGVHRgae~t~DISADL~e 175 (335)
T 4gim_A 96 KVGLSKEEIELLGREGHNVTKVSRRDLPFVVAAGKNGATTVASTMIIAALAGIKVFATGGIGGVHRGAEHTFDISADLQE 175 (335)
T ss_dssp EESCCHHHHHHHHHHGGGSEEECTTTHHHHHHTTCCEEECHHHHHHHHHHTTCCEEECSCCCCBBTTHHHHCCBCHHHHH
T ss_pred EEcCCHHHHHHHHhcCCCceeeecccHHHHhhcCCCccccHHHHHHHHHHCCCcEEeeCCcCccCCCCCCCccccchHHH
Confidence 344555555444433 334555 3 7777777778888888888889999999987532 22
Q ss_pred cCCCcEEEECCCCCccchHHHHHHHHHHhCCcEEec
Q 038651 86 KAVKPAMIGGPKLSVSKATIAFVELADACGYAFAVM 121 (324)
Q Consensus 86 ~AkrPvIl~G~g~~~~~a~~~l~~lae~l~~Pv~tt 121 (324)
=++.||.++-.|+..-=....-.|+.|.+|+||++-
T Consensus 176 LarTpV~VVcAG~KSILDi~~TLE~LET~GVpVvgy 211 (335)
T 4gim_A 176 LANTNVTVVCAGAASILDLGLTTEYLETFGVPLIGY 211 (335)
T ss_dssp HHHSCCEEEECBCCTTBCHHHHHHHHHHTTCCEEEE
T ss_pred hccCCeEEEeecchhhccchhHHHHHHhcCceEEEe
Confidence 367899999999876555677888999999999865
Done!