BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038652
(174 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JWJ|A Chain A, Crystal Structure Analysis Of The Methyltransferase Domain
Of Bacterial-Avhen1-Cn
pdb|3JWJ|B Chain B, Crystal Structure Analysis Of The Methyltransferase Domain
Of Bacterial-Avhen1-Cn
Length = 202
Score = 34.3 bits (77), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 6/104 (5%)
Query: 75 ISAEQVDELKLPISEAEAYGVILG--TGKSKKTQG--VCRNYKWLETLGVTHINWKTRVM 130
I+ E++D L+LP ++ E +I G T + K+ G + +E L ++ + RV+
Sbjct: 58 IAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVL 117
Query: 131 KFTFGKSQIVLQGDPSIQKMLISLNAIVRAIRHEGHGY-WVEMQ 173
F F + +IV+ P+I+ + N +RH+ H + W Q
Sbjct: 118 -FEFAQPKIVIVTTPNIEYNVKFANLPAGKLRHKDHRFEWTRSQ 160
>pdb|3JWH|A Chain A, Crystal Structure Analysis Of The Methyltransferase Domain
Of Bacterial-Avhen1-C
pdb|3JWH|B Chain B, Crystal Structure Analysis Of The Methyltransferase Domain
Of Bacterial-Avhen1-C
Length = 217
Score = 34.3 bits (77), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 6/104 (5%)
Query: 75 ISAEQVDELKLPISEAEAYGVILG--TGKSKKTQG--VCRNYKWLETLGVTHINWKTRVM 130
I+ E++D L+LP ++ E +I G T + K+ G + +E L ++ + RV+
Sbjct: 68 IAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVL 127
Query: 131 KFTFGKSQIVLQGDPSIQKMLISLNAIVRAIRHEGHGY-WVEMQ 173
F F + +IV+ P+I+ + N +RH+ H + W Q
Sbjct: 128 -FEFAQPKIVIVTTPNIEYNVKFANLPAGKLRHKDHRFEWTRSQ 170
>pdb|3C5N|A Chain A, Structure Of Human Tulp1 In Complex With Ip3
pdb|3C5N|B Chain B, Structure Of Human Tulp1 In Complex With Ip3
Length = 246
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 13/99 (13%)
Query: 52 NVLGFVGEHKVTIVIDSGASPNFISAEQVDELKLPISEAEAYGVILGTGKSKKTQGVCRN 111
NVLGF G ++T++I +SAE ++PI A +L ++K + +
Sbjct: 121 NVLGFRGPRRMTVIIPG------MSAENE---RVPIRPRNASDGLLVRWQNKTLESLIEL 171
Query: 112 YK----WLETLGVTHINWKTRVMKFTFGKSQIVLQGDPS 146
+ W + G +N++ RV + + QIV DP
Sbjct: 172 HNKPPVWNDDSGSYTLNFQGRVTQASVKNFQIVHADDPD 210
>pdb|2FIM|A Chain A, Structure Of The C-Terminal Domain Of Human Tubby-Like
Protein 1
pdb|2FIM|B Chain B, Structure Of The C-Terminal Domain Of Human Tubby-Like
Protein 1
Length = 276
Score = 31.2 bits (69), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 13/99 (13%)
Query: 52 NVLGFVGEHKVTIVIDSGASPNFISAEQVDELKLPISEAEAYGVILGTGKSKKTQGVCRN 111
NVLGF G ++T++I +SAE ++PI A +L ++K + +
Sbjct: 145 NVLGFRGPRRMTVIIPG------MSAENE---RVPIRPRNASDGLLVRWQNKTLESLIEL 195
Query: 112 YK----WLETLGVTHINWKTRVMKFTFGKSQIVLQGDPS 146
+ W + G +N++ RV + + QIV DP
Sbjct: 196 HNKPPVWNDDSGSYTLNFQGRVTQASVKNFQIVHADDPD 234
>pdb|1HPL|A Chain A, Horse Pancreatic Lipase. The Crystal Structure At 2.3
Angstroms Resolution
pdb|1HPL|B Chain B, Horse Pancreatic Lipase. The Crystal Structure At 2.3
Angstroms Resolution
Length = 449
Score = 30.4 bits (67), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Query: 33 KIAKVLLNAVMGLTLPKTFNVLGFVGEHKVTIVIDSGASPNFISAEQVDE 82
K+ + N V+ LTLPK VG K+T+ + G+ NF S E V E
Sbjct: 398 KVKFIWYNNVINLTLPK-------VGASKITVERNDGSVFNFCSEETVRE 440
>pdb|4FB2|A Chain A, Crystal Structure Of Substrate-Free P450cin
pdb|4FB2|B Chain B, Crystal Structure Of Substrate-Free P450cin
pdb|4FB2|C Chain C, Crystal Structure Of Substrate-Free P450cin
pdb|4FB2|D Chain D, Crystal Structure Of Substrate-Free P450cin
pdb|4FYZ|A Chain A, Crystal Structure Of Nitrosyl Cytochrome P450cin
pdb|4FYZ|B Chain B, Crystal Structure Of Nitrosyl Cytochrome P450cin
pdb|4FMX|A Chain A, Crystal Structure Of Substrate-Bound P450cin
pdb|4FMX|B Chain B, Crystal Structure Of Substrate-Bound P450cin
Length = 398
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 58 GEHKVTIVIDSGASPNFISAEQVDELKLPISEAEAYGVILGTGKSKKTQGVCRNYKWLET 117
+H T + G F A + + PI +EAYG K+ Q V +N K
Sbjct: 8 ADHYHTPLGPDGTPHAFFEALRDEAETTPIGWSEAYGGHWVVAGYKEIQAVIQNTKAFSN 67
Query: 118 LGVTHINWKTRVMKFTFGKSQIVL--QGDPSIQK 149
GVT ++T G+ ++++ Q DP +K
Sbjct: 68 KGVTFPRYET-------GEFELMMAGQDDPVHKK 94
>pdb|1T2B|A Chain A, Crystal Structure Of Cytochrome P450cin Complexed With Its
Substrate 1,8-Cineole
pdb|1T2B|B Chain B, Crystal Structure Of Cytochrome P450cin Complexed With Its
Substrate 1,8-Cineole
Length = 397
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 58 GEHKVTIVIDSGASPNFISAEQVDELKLPISEAEAYGVILGTGKSKKTQGVCRNYKWLET 117
+H T + G F A + + PI +EAYG K+ Q V +N K
Sbjct: 7 ADHYHTPLGPDGTPHAFFEALRDEAETTPIGWSEAYGGHWVVAGYKEIQAVIQNTKAFSN 66
Query: 118 LGVTHINWKTRVMKFTFGKSQIVL--QGDPSIQK 149
GVT ++T G+ ++++ Q DP +K
Sbjct: 67 KGVTFPRYET-------GEFELMMAGQDDPVHKK 93
>pdb|3BDZ|A Chain A, The Role Of Asn 242 In P450cin
pdb|3BDZ|B Chain B, The Role Of Asn 242 In P450cin
pdb|3BE0|A Chain A, The Role Of Asn 242 In P450cin
pdb|3BE0|B Chain B, The Role Of Asn 242 In P450cin
Length = 397
Score = 28.1 bits (61), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 58 GEHKVTIVIDSGASPNFISAEQVDELKLPISEAEAYGVILGTGKSKKTQGVCRNYKWLET 117
+H T + G F A + + PI +EAYG K+ Q V +N K
Sbjct: 7 ADHYHTPLGPDGTPHAFFEALRDEAETTPIGWSEAYGGHWVVAGYKEIQAVIQNTKAFSN 66
Query: 118 LGVTHINWKTRVMKFTFGKSQIVL--QGDPSIQK 149
GVT ++T G+ ++++ Q DP +K
Sbjct: 67 KGVTFPRYET-------GEFELMMAGQDDPVHKK 93
>pdb|2JU1|A Chain A, Solution Structure Of Acyl Carrier Protein Domain From
Module 2 Of 6-Deoxyerythronolide B Synthase (Debs)
pdb|2JU2|A Chain A, Minimized Mean Solution Structure Of The Acyl Carrier
Protein Domain From Module 2 Of 6-Deoxyerythronolide B
Synthase (Debs)
Length = 95
Score = 27.7 bits (60), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 1 MIRALGTSVA-----ESSNFIRKSGNFRRLTKDEIRAKIAKVLLNAVMGLTLPKTF 51
++R + TS A + +R + F+ L D + A + LLNA GL LP T
Sbjct: 21 LVRLVRTSTATVLGHDDPKAVRATTPFKELGFDSLAAVRLRNLLNAATGLRLPSTL 76
>pdb|1K75|A Chain A, The L-Histidinol Dehydrogenase (Hisd) Structure Implicates
Domain Swapping And Gene Duplication.
pdb|1K75|B Chain B, The L-Histidinol Dehydrogenase (Hisd) Structure Implicates
Domain Swapping And Gene Duplication
Length = 434
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 8/21 (38%), Positives = 17/21 (80%)
Query: 58 GEHKVTIVIDSGASPNFISAE 78
G +V ++ DSGA+P+F++++
Sbjct: 235 GPSEVLVIADSGATPDFVASD 255
>pdb|1KAE|A Chain A, L-Histidinol Dehydrogenase (Hisd) Structure Complexed With
L- Histidinol (Substrate), Zinc And Nad (Cofactor)
pdb|1KAE|B Chain B, L-Histidinol Dehydrogenase (Hisd) Structure Complexed With
L- Histidinol (Substrate), Zinc And Nad (Cofactor)
pdb|1KAH|A Chain A, L-histidinol Dehydrogenase (hisd) Structure Complexed With
L-histidine (product), Zn And Nad (cofactor)
pdb|1KAH|B Chain B, L-histidinol Dehydrogenase (hisd) Structure Complexed With
L-histidine (product), Zn And Nad (cofactor)
pdb|1KAR|A Chain A, L-histidinol Dehydrogenase (hisd) Structure Complexed With
Histamine (inhibitor), Zinc And Nad (cofactor)
pdb|1KAR|B Chain B, L-histidinol Dehydrogenase (hisd) Structure Complexed With
Histamine (inhibitor), Zinc And Nad (cofactor)
Length = 434
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 8/21 (38%), Positives = 17/21 (80%)
Query: 58 GEHKVTIVIDSGASPNFISAE 78
G +V ++ DSGA+P+F++++
Sbjct: 235 GPSEVLVIADSGATPDFVASD 255
>pdb|2NLY|A Chain A, Crystal Structure Of Protein Bh1492 From Bacillus
Halodurans, Pfam Duf610
Length = 245
Score = 26.9 bits (58), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 23/124 (18%)
Query: 19 SGNFRRLTKDEIRAKIAKVL--------LNAVMGLTLPKTFNVLGFVGE---HKVTIVID 67
SG L+ E+++++ K LN MG + + ++ + E K +ID
Sbjct: 74 SGITSNLSVGEVKSRVRKAFDDIPYAVGLNNHMGSKIVENEKIMRAILEVVKEKNAFIID 133
Query: 68 SGASPNFISAEQVDELKLPISEAEAYGVILGTGKSKKTQGVCRNYKWL--------ETLG 119
SG SP+ + + +EL++P + + + T S+K V +N + L E +G
Sbjct: 134 SGTSPHSLIPQLAEELEVPYATRSIF--LDNTHSSRKE--VIKNMRKLAKKAKQGSEPIG 189
Query: 120 VTHI 123
+ H+
Sbjct: 190 IGHV 193
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,907,083
Number of Sequences: 62578
Number of extensions: 188939
Number of successful extensions: 484
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 477
Number of HSP's gapped (non-prelim): 13
length of query: 174
length of database: 14,973,337
effective HSP length: 92
effective length of query: 82
effective length of database: 9,216,161
effective search space: 755725202
effective search space used: 755725202
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)