BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038652
(174 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P76352|YEEO_ECOLI Uncharacterized transporter YeeO OS=Escherichia coli (strain K12)
GN=yeeO PE=3 SV=3
Length = 495
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 56/133 (42%), Gaps = 16/133 (12%)
Query: 42 VMGLTLPKTFNVLGFVGEHKVTIVIDSGA-----SPNFISAEQVDELKLPISEAEAYGVI 96
VMG+ +P + + F +T + +G + NFI+ + LP S + I
Sbjct: 272 VMGIGIPASVESVLFTSGRLLTQMFVAGMGTSVIAGNFIAFSIAALINLPGSALGSASTI 331
Query: 97 -----LGTGKSKKTQGVCRNYKWLETLGVTHINWKTRVMKFTFGKSQIVLQGDPSIQK-- 149
LG G+ + + R+ WL TLG+T I W T G DP ++
Sbjct: 332 ITGRRLGVGQIAQAEIQLRHVFWLSTLGLTAIAWLTAPFA---GVMASFYTQDPQVKHVV 388
Query: 150 -MLISLNAIVRAI 161
+LI LNA+ I
Sbjct: 389 VILIWLNALFMPI 401
>sp|Q8VY92|P24DA_ARATH Transmembrane emp24 domain-containing protein p24delta10
OS=Arabidopsis thaliana GN=At1g69460 PE=1 SV=1
Length = 214
Score = 33.5 bits (75), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 74/163 (45%), Gaps = 24/163 (14%)
Query: 1 MIRALGTSVAESSNFIRKSGNFRRLTKDEIRAKIAKV----LLNAVMGLTLPKTFNVLGF 56
+I A+ + ++ S +F SG + + +D I++ V + N G LP+T
Sbjct: 13 LILAIWSPISHSLHFDLHSGRTKCIAED-IKSNSMTVGKYNIDNPHEGQALPQT------ 65
Query: 57 VGEHKVTIVIDSGASPNFISAEQVDELKLPISEAEA--YGVILGTGKSKKTQGVCRNYKW 114
HK+++ + S + N+ AEQVD + S EA Y K + +++W
Sbjct: 66 ---HKISVKVTSNSGNNYHHAEQVDSGQFAFSAVEAGDYMACFTAVDHKPEVSLSIDFEW 122
Query: 115 LETLGVTHINWKTRVMKFTFGKSQIVLQGDPSIQKMLISLNAI 157
GV +W V K KSQ+ + + ++ +L ++N+I
Sbjct: 123 --KTGVQSKSW-ANVAK----KSQVEVM-EFEVKSLLDTVNSI 157
>sp|O00295|TULP2_HUMAN Tubby-related protein 2 OS=Homo sapiens GN=TULP2 PE=2 SV=2
Length = 520
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 16/105 (15%)
Query: 52 NVLGFVGEHKVTIVIDSGASPNFISAEQVDELKLPISEAEAYGVILGTGKSKKTQGVC-- 109
NVLG++G K+T+++ P S Q ++ P++E E+ +L + QG+
Sbjct: 395 NVLGYLGPRKMTVIL-----PGTNSQNQRINVQ-PLNEQES---LLSRYQRGDKQGLLLL 445
Query: 110 --RNYKWLETLGVTHINWKTRVMKFTFGKSQIVLQGDPSIQKMLI 152
+ W + GV +N+ RV + + QIV DP Q+ L+
Sbjct: 446 HNKTPSWDKENGVYTLNFHGRVTRASVKNFQIV---DPKHQEHLV 487
>sp|A0B5J1|GUAAA_METTP GMP synthase [glutamine-hydrolyzing] subunit A OS=Methanosaeta
thermophila (strain DSM 6194 / PT) GN=guaAA PE=3 SV=1
Length = 181
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Query: 86 PISEAEAYGVILGTGKSKKTQGVCRNYKWLETLGVTHINWKTRVMKFTFGK--SQIVLQG 143
P+ + A G+ILG G S G C Y + V I ++M TFG + G
Sbjct: 34 PVEDIVADGLILGGGPSMDRSGRCSEYLRTLDIPVLGICLGLQIMAVTFGGKVEPGKVGG 93
Query: 144 DPSIQKMLISLNAIVRAIRH 163
S++ ++ + I+R + H
Sbjct: 94 YASVEIEVLEEDGILRGVPH 113
>sp|B2KB59|RIMO_ELUMP Ribosomal protein S12 methylthiotransferase RimO OS=Elusimicrobium
minutum (strain Pei191) GN=rimO PE=3 SV=1
Length = 430
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 19/91 (20%)
Query: 1 MIRALGTSVAESSNFIRKSGNFRRLTKDEIRAKIAKVLLNAVMGLTLPKTFNVLGFVGEH 60
+ R L + S + K+ N RR T+DE+RAKI K++ V G++L F + GF GE
Sbjct: 249 ICRYLDMPLQHISAPVLKAMN-RRSTEDEVRAKI-KLIRQIVPGMSLRTNF-IAGFPGE- 304
Query: 61 KVTIVIDSGASPNFISAEQVDELKLPISEAE 91
+AE ++LK I+EA+
Sbjct: 305 ---------------TAEDFEKLKKFIAEAK 320
>sp|Q9Z273|TULP1_MOUSE Tubby-related protein 1 OS=Mus musculus GN=Tulp1 PE=1 SV=1
Length = 543
Score = 32.0 bits (71), Expect = 2.3, Method: Composition-based stats.
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 13/98 (13%)
Query: 52 NVLGFVGEHKVTIVIDSGASPNFISAEQVDELKLPISEAEAYGVILGTGKSKKTQGVCRN 111
NVLGF G ++T++I S D ++PI A +L ++K + +
Sbjct: 412 NVLGFRGPRRMTVIIPGMNS---------DNERVPIRPRNASDGLLVRWQNKTLESLIEL 462
Query: 112 YK----WLETLGVTHINWKTRVMKFTFGKSQIVLQGDP 145
+ W E G +N++ RV + + QIV DP
Sbjct: 463 HNKPPIWNEDSGSYTLNFQGRVTQASVKNFQIVHADDP 500
>sp|Q9NR82|KCNQ5_HUMAN Potassium voltage-gated channel subfamily KQT member 5 OS=Homo
sapiens GN=KCNQ5 PE=1 SV=3
Length = 932
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 26/63 (41%)
Query: 64 IVIDSGASPNFISAEQVDELKLPISEAEAYGVILGTGKSKKTQGVCRNYKWLETLGVTHI 123
+ D P + D P EA L TG+S+ +Q +C+ + + L + H+
Sbjct: 870 FITDEEVGPEETETDTFDAAPQPAREAAFASDSLRTGRSRSSQSICKAGESTDALSLPHV 929
Query: 124 NWK 126
K
Sbjct: 930 KLK 932
>sp|Q9TLT3|RK4_CYACA 50S ribosomal protein L4, chloroplastic OS=Cyanidium caldarium
GN=rpl4 PE=3 SV=1
Length = 219
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 18/110 (16%)
Query: 22 FRRLTKDEIRAKIAKVLLNAVMGLTLPKTFNVLGFVGEHKVTIVIDSGASPNFISAEQVD 81
F ++ K EIR + VL NA LPKT T+V PNFIS + +
Sbjct: 106 FFKINKKEIRLALYTVLSNA-----LPKT------------TVVSSLEGLPNFISTQALI 148
Query: 82 ELKLPISEAEAYGVILGTGKSKKTQGV-CRNYKWLETLGVTHINWKTRVM 130
+ ++ + V++ K + + CRN K L + H+N K+ ++
Sbjct: 149 KFLRSLNVSLDNRVLIVVEKKETPLFLSCRNIKNLALIQADHLNVKSVIL 198
>sp|P29183|LIPP_HORSE Pancreatic triacylglycerol lipase (Fragment) OS=Equus caballus
GN=PNLIP PE=1 SV=2
Length = 461
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Query: 33 KIAKVLLNAVMGLTLPKTFNVLGFVGEHKVTIVIDSGASPNFISAEQVDE 82
K+ + N V+ LTLPK VG K+T+ + G+ NF S E V E
Sbjct: 410 KVKFIWYNNVINLTLPK-------VGASKITVERNDGSVFNFCSEETVRE 452
>sp|A2RHW0|Y241_LACLM UPF0348 protein llmg_0241 OS=Lactococcus lactis subsp. cremoris
(strain MG1363) GN=llmg_0241 PE=3 SV=1
Length = 379
Score = 30.4 bits (67), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 9/52 (17%)
Query: 14 NFIRKSGNF---------RRLTKDEIRAKIAKVLLNAVMGLTLPKTFNVLGF 56
N I+ + NF +R TK +R + +LLN LPK ++LGF
Sbjct: 271 NAIKSAKNFDELVELVYTKRYTKARVRRLLTYILLNIPKEFNLPKEIHILGF 322
>sp|Q032L8|Y236_LACLS UPF0348 protein LACR_0236 OS=Lactococcus lactis subsp. cremoris
(strain SK11) GN=LACR_0236 PE=3 SV=1
Length = 389
Score = 29.6 bits (65), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 9/52 (17%)
Query: 14 NFIRKSGNF---------RRLTKDEIRAKIAKVLLNAVMGLTLPKTFNVLGF 56
N ++ + NF +R TK +R + +LLN LPK ++LGF
Sbjct: 281 NAVKSAKNFDELVELVYTKRYTKARVRRLLTYILLNIPKEFNLPKEIHILGF 332
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.135 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,385,624
Number of Sequences: 539616
Number of extensions: 2355853
Number of successful extensions: 5539
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 5535
Number of HSP's gapped (non-prelim): 15
length of query: 174
length of database: 191,569,459
effective HSP length: 109
effective length of query: 65
effective length of database: 132,751,315
effective search space: 8628835475
effective search space used: 8628835475
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)