Query 038653
Match_columns 437
No_of_seqs 178 out of 503
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 23:11:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038653.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038653hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rrk_A V-type ATPase 116 kDa s 99.7 2.8E-18 9.6E-23 172.1 8.9 148 74-227 154-342 (357)
2 2k21_A Potassium voltage-gated 62.7 4 0.00014 35.7 2.5 17 247-263 54-70 (138)
3 2rdd_B UPF0092 membrane protei 21.7 50 0.0017 22.3 2.1 20 381-400 4-23 (37)
4 1wfw_A Kalirin-9A; SH3 domain, 21.2 25 0.00087 27.7 0.6 24 158-181 39-64 (74)
5 1gk6_A Vimentin; intermediate 19.0 2.7E+02 0.0092 20.5 5.9 41 119-159 2-50 (59)
6 2qn6_B Translation initiation 13.7 85 0.0029 25.5 2.1 46 172-217 9-55 (93)
7 2nnu_A Regulatory protein E2; 10.9 5.2E+02 0.018 24.0 6.7 58 119-181 5-67 (205)
8 2xv5_A Lamin-A/C; structural p 9.1 6.7E+02 0.023 19.3 6.5 43 117-159 5-55 (74)
9 1yz7_A Probable translation in 7.5 3.6E+02 0.012 24.4 4.1 42 172-217 94-138 (188)
10 1tue_B Regulatory protein E2; 7.0 9E+02 0.031 22.5 6.6 56 121-181 10-70 (218)
No 1
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=99.73 E-value=2.8e-18 Score=172.09 Aligned_cols=148 Identities=15% Similarity=0.150 Sum_probs=99.2
Q ss_pred Cc-cCCchhhHHHHHHHhcCCceEEEeeecCCC-------------------------ccC-CC-Cc--------cchhc
Q 038653 74 PY-YKRKDNGFERILFHATRGNVFLKQSVVEDP-------------------------VAD-PV-SG--------EKVSG 117 (437)
Q Consensus 74 ~I-~~~k~~~FeRiLwRatRGN~~~~~~~i~~~-------------------------~~d-p~-tg--------e~v~~ 117 (437)
+| ++++...|+|.|||+++|..+....+-... ..+ |. .| +.+++
T Consensus 154 ~ip~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~~~v~~il~s~~f~~~~~p~~~~~~~p~~~l~~l~~ 233 (357)
T 3rrk_A 154 LVAKPEELEAVRKALQEALADRFVLEAEPLENQLAALVVVKRSELEAARSSLSRLGLAELRFPGAYGAMPLGKAAARMKE 233 (357)
T ss_dssp EESCHHHHHHHHHHHHHHHTTSCEEEEEECSSSEEEEEEEEGGGHHHHHHHHHTTTCCBCCCCGGGGGSCHHHHHHHHHH
T ss_pred EecChhhHHHHHHHHHHhcCCeEEEEeecCCCcEEEEEEEEHHHHHHHHHHHHHCCCeeccCCcccCCCCHHHHHHHHHH
Confidence 58 899999999999999999433322221110 001 21 23 12999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--HHHHHHHHhcccccccCCceEEEEEEeecCChhHHHHHHHHHHHh
Q 038653 118 RISELRTTIDVGLVHRSNLLQTIADQFEQWNLL--MEKVIYRTLNMLSMDVTKKCLVAESWCPVSAANQIENTLQRATIN 195 (437)
Q Consensus 118 ri~dl~~vl~~t~~~~~~~L~~ia~~l~~W~~~--KEKaIY~tLN~~~~D~t~k~LiaE~W~P~~~~~~I~~aL~~~~~~ 195 (437)
||++++++++.+++++.+++...+..+..|... +||++|+++|+|. ++++|++++||||+++++.++.+|++
T Consensus 234 ~i~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~gWvp~~~~~~~~~~l~~---- 307 (357)
T 3rrk_A 234 RARLAPEELVGIREEVARLSRESGEALIALWTRAKDEVARYKAVADMA--AGKYGAALMGWVPQKAKGKVEEALGR---- 307 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--TTCCSEEEEEEECTTTHHHHHHTCCS----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--ccCcEEEEEEEeeHHHHHHHHHHHHh----
Confidence 999999999999999999999999999999999 9999999999874 79999999999999999999999975
Q ss_pred cCCcccceeEecccC---CCCCCccCCCceeccee
Q 038653 196 SNSQIGAIFQVLQIK---GSLPTYFPDKQFCFCFS 227 (437)
Q Consensus 196 sgs~v~~i~~~i~t~---~~PPTyfrTNkFT~~FQ 227 (437)
+++.+..+++...++ +.||||++|||||.+||
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~pPt~l~n~~~~~~fe 342 (357)
T 3rrk_A 308 LRDQIVYTFEPVDEHHESHQVPVTLENPAWAKPFE 342 (357)
T ss_dssp SCEEEEC----------------------------
T ss_pred cCCceEEEEecCCccccCCCcCEeccCCchhhHHH
Confidence 245677777777777 58999999999999999
No 2
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=62.66 E-value=4 Score=35.72 Aligned_cols=17 Identities=35% Similarity=0.671 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHhhh
Q 038653 247 RYVIMMMALFSIYTGLI 263 (437)
Q Consensus 247 RYiILLMGlFSiYtGfI 263 (437)
=||+++||+||+++|=|
T Consensus 54 lYIL~vmgffgff~~GI 70 (138)
T 2k21_A 54 LYVLMVLGFFGFFTLGI 70 (138)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred ehHHHHHHHHHHHHHHH
Confidence 49999999999998744
No 3
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=21.73 E-value=50 Score=22.31 Aligned_cols=20 Identities=15% Similarity=0.431 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHhhcccccch
Q 038653 381 QILLLLSALVAVSWMPFPKP 400 (437)
Q Consensus 381 Q~~LlliAlicVP~MLl~KP 400 (437)
..++.+++++.|.+.++-.|
T Consensus 4 ~~~l~~v~~~~ifYFl~iRP 23 (37)
T 2rdd_B 4 SLILMLVVFGLIFYFMILRP 23 (37)
T ss_dssp HHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 34555666667777776666
No 4
>1wfw_A Kalirin-9A; SH3 domain, neuron-specific GDP/GTP exchange factor, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.34.2.1
Probab=21.24 E-value=25 Score=27.67 Aligned_cols=24 Identities=29% Similarity=0.428 Sum_probs=16.8
Q ss_pred Hhccccc--ccCCceEEEEEEeecCC
Q 038653 158 TLNMLSM--DVTKKCLVAESWCPVSA 181 (437)
Q Consensus 158 tLN~~~~--D~t~k~LiaE~W~P~~~ 181 (437)
.+|||=+ --+..|.-||+|+|-.-
T Consensus 39 qqnm~Lv~~~a~~q~paaegWvPG~v 64 (74)
T 1wfw_A 39 QQNMCLVYQPASDHSPAAEGWVPGSI 64 (74)
T ss_dssp TTSEEEEEECSCSSSSSEEEEEEGGG
T ss_pred CcceEEEEeecCCCCccccCcccccE
Confidence 3577733 22567999999999753
No 5
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=19.03 E-value=2.7e+02 Score=20.47 Aligned_cols=41 Identities=20% Similarity=0.267 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHH------HH--HHHHHHHHh
Q 038653 119 ISELRTTIDVGLVHRSNLLQTIADQFEQWN------LL--MEKVIYRTL 159 (437)
Q Consensus 119 i~dl~~vl~~t~~~~~~~L~~ia~~l~~W~------~~--KEKaIY~tL 159 (437)
+++++..+..-+..+.+.-..++.++..+. .. .|-+.|..|
T Consensus 2 l~~~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIatYRkL 50 (59)
T 1gk6_A 2 MKQLEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIATYRKL 50 (59)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 445555555555555555454544443333 22 677888765
No 6
>2qn6_B Translation initiation factor 2 alpha subunit; initiation of translation, GTP-binding, nucleotide-binding, protein biosynthesis; HET: GDP; 2.15A {Sulfolobus solfataricus} SCOP: d.58.51.1 PDB: 2qmu_B* 3qsy_B*
Probab=13.73 E-value=85 Score=25.49 Aligned_cols=46 Identities=11% Similarity=0.168 Sum_probs=26.1
Q ss_pred EEEEEeecC-ChhHHHHHHHHHHHhcCCcccceeEecccCCCCCCcc
Q 038653 172 VAESWCPVS-AANQIENTLQRATINSNSQIGAIFQVLQIKGSLPTYF 217 (437)
Q Consensus 172 iaE~W~P~~-~~~~I~~aL~~~~~~sgs~v~~i~~~i~t~~~PPTyf 217 (437)
.-|.+|+.. -++.|++||+.|...+...+++.+..=-+---||.|-
T Consensus 9 ~iel~c~~~dGIe~IK~AL~~a~~~~~~~~~~~~~vkI~~vgaP~Y~ 55 (93)
T 2qn6_B 9 LITVRTNEPLGVEKIKEVISKALENIEQDYESLLNIKIYTIGAPRYR 55 (93)
T ss_dssp EEEEEECCTTTHHHHHHHHHHHHTTHHHHCTTEEEEEEEESSTTEEE
T ss_pred EEEEEeCCCchHHHHHHHHHHHHhhcccccCccceEEEEEEcCCeEE
Confidence 347888865 5899999999775533333322222101123477773
No 7
>2nnu_A Regulatory protein E2; protein-peptide complex, helical peptide, three helix bundle, amphipathic helix, transcription; 1.59A {Human papillomavirus type 16} SCOP: b.91.1.1 PDB: 1dto_A
Probab=10.89 E-value=5.2e+02 Score=23.97 Aligned_cols=58 Identities=16% Similarity=0.298 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHH-HHHHHHHHhcccccccCCceEEEEEEeecCC
Q 038653 119 ISELRTTIDVGLVHRSNLLQT----IADQFEQWNLL-MEKVIYRTLNMLSMDVTKKCLVAESWCPVSA 181 (437)
Q Consensus 119 i~dl~~vl~~t~~~~~~~L~~----ia~~l~~W~~~-KEKaIY~tLN~~~~D~t~k~LiaE~W~P~~~ 181 (437)
++.|.+=|+.-++.+-.+.+. +..+|..|... ||-+|++.-..--+ + -+|-.=+|.-.
T Consensus 5 ME~L~~RldalQe~ll~lyE~ds~~L~dqI~~W~lvR~E~vLly~AR~~G~--~---~lG~q~VP~l~ 67 (205)
T 2nnu_A 5 METLCQRLNVCQDKILTHYENDSTDLRDHIDYWKHMRLECAIYYKAREMGF--K---HINHQVVPTLA 67 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHTTC--S---EETTEECCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHCCc--C---eeCCeECCcHH
Confidence 344444445555555555553 55789999999 99999987665432 2 24555566543
No 8
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=9.06 E-value=6.7e+02 Score=19.34 Aligned_cols=43 Identities=16% Similarity=0.210 Sum_probs=26.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH------H--HHHHHHHHh
Q 038653 117 GRISELRTTIDVGLVHRSNLLQTIADQFEQWNL------L--MEKVIYRTL 159 (437)
Q Consensus 117 ~ri~dl~~vl~~t~~~~~~~L~~ia~~l~~W~~------~--KEKaIY~tL 159 (437)
...++.+.+|..-+..+.++-..++.++..+.. . .|-+.|..|
T Consensus 5 ~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniKl~Le~EIatYRkL 55 (74)
T 2xv5_A 5 RERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYRKL 55 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666655555555444432 2 677889866
No 9
>1yz7_A Probable translation initiation factor 2 alpha subunit; helical domain, alpha-beta domain; 2.26A {Pyrococcus abyssi}
Probab=7.50 E-value=3.6e+02 Score=24.44 Aligned_cols=42 Identities=24% Similarity=0.231 Sum_probs=26.1
Q ss_pred EEEEEeecCC-hhHHHHHHHHHHH--hcCCcccceeEecccCCCCCCcc
Q 038653 172 VAESWCPVSA-ANQIENTLQRATI--NSNSQIGAIFQVLQIKGSLPTYF 217 (437)
Q Consensus 172 iaE~W~P~~~-~~~I~~aL~~~~~--~sgs~v~~i~~~i~t~~~PPTyf 217 (437)
.-|.+|+..+ ++.|+.||+.|.. .+...++-=+. ---||.|-
T Consensus 94 ~ieltc~~~dGIe~IK~AL~~a~~~~~~~~~~~ikI~----lvgaP~Y~ 138 (188)
T 1yz7_A 94 EFEITVPKPNGVEIIKEALIRARDRANKEKDVEVKFT----YLGAPRYR 138 (188)
T ss_dssp EEEEECCSTTHHHHHHHHHHHHHHHHHTSTTCEEEEE----ECSTTEEE
T ss_pred EEEEEeCCCchHHHHHHHHHHHHhcccCCCCCcEEEE----EEcCcEEE
Confidence 3468888665 8999999998765 44433321111 13477774
No 10
>1tue_B Regulatory protein E2; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: b.91.1.1
Probab=7.05 E-value=9e+02 Score=22.55 Aligned_cols=56 Identities=14% Similarity=0.229 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHhHHHHHH-HHHHHHHHhcccccccCCceEEEEEEeecCC
Q 038653 121 ELRTTIDVGLVHRSNLLQT----IADQFEQWNLL-MEKVIYRTLNMLSMDVTKKCLVAESWCPVSA 181 (437)
Q Consensus 121 dl~~vl~~t~~~~~~~L~~----ia~~l~~W~~~-KEKaIY~tLN~~~~D~t~k~LiaE~W~P~~~ 181 (437)
.|.+=|+.-++.+-.+.+. +..+|..|... ||-+|++.-..--+ + -+|-.=+|.-.
T Consensus 10 ~L~~RldalQe~ll~lyE~dS~~L~dqI~yW~lvR~E~vLly~AR~~G~--~---~lG~q~VP~l~ 70 (218)
T 1tue_B 10 TLSERLSALQDKIIDHYENDSKDIDSQIQYWQLIRWENAIFFAAREHGI--Q---TLNHQVVPAYN 70 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHTTC--S---EETTEECCCHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHcCc--C---eeCCeECCcHH
Confidence 3444444444444444443 45789999999 99999987665432 2 24555566543
Done!