Query 038653
Match_columns 437
No_of_seqs 178 out of 503
Neff 5.3
Searched_HMMs 13730
Date Mon Mar 25 23:12:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038653.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/038653hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jr9a2 d.44.1.1 (A:92-202) Mn 13.1 23 0.0016 27.7 0.4 18 266-284 27-44 (111)
2 d1eysh2 f.23.10.1 (H:7-43) Pho 9.6 88 0.0064 19.9 2.3 15 250-264 8-22 (37)
3 d2axpa1 c.37.1.1 (A:2-165) Hyp 8.8 52 0.0038 26.2 1.1 14 1-14 80-93 (164)
4 d1s3ga2 g.41.2.1 (A:126-160) M 8.3 27 0.0019 22.0 -0.7 13 260-272 8-20 (35)
5 d1p7ga2 d.44.1.1 (A:104-222) F 8.3 26 0.0019 27.7 -1.0 16 266-282 25-40 (119)
6 d1tueb_ b.91.1.1 (B:) E2 regul 8.1 3.6E+02 0.026 22.6 6.6 37 140-181 31-68 (194)
7 d1aopa2 d.58.36.1 (A:346-425) 8.1 99 0.0072 22.3 2.5 26 172-197 53-78 (80)
8 d2nnua1 b.91.1.1 (A:1-200) E2 7.8 3.8E+02 0.028 22.5 6.6 37 140-181 26-63 (200)
9 d1q8ka2 d.58.51.1 (A:186-302) 7.0 1.4E+02 0.01 23.2 3.1 55 174-232 10-69 (117)
10 d1idsa2 d.44.1.1 (A:86-199) Fe 6.3 36 0.0026 26.5 -1.0 17 265-282 26-42 (114)
No 1
>d1jr9a2 d.44.1.1 (A:92-202) Mn superoxide dismutase (MnSOD) {Bacillus halodenitrificans [TaxId: 1482]}
Probab=13.06 E-value=23 Score=27.68 Aligned_cols=18 Identities=39% Similarity=0.512 Sum_probs=13.4
Q ss_pred cccccccccCCCCCccccC
Q 038653 266 EFFSAPSELFGPSAYACCD 284 (437)
Q Consensus 266 D~FS~slnlFg~S~w~~~~ 284 (437)
+|-...+.+|| |+|.|-.
T Consensus 27 ~f~~~a~~~~G-sGW~wL~ 44 (111)
T d1jr9a2 27 EFAAAAAGRFG-SGWAWLV 44 (111)
T ss_dssp HHHHHHHHCCS-SEEEECC
T ss_pred HHHHHhhcccc-ceEEEEE
Confidence 34455789999 9998853
No 2
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=9.60 E-value=88 Score=19.88 Aligned_cols=15 Identities=33% Similarity=0.636 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHhhhh
Q 038653 250 IMMMALFSIYTGLIY 264 (437)
Q Consensus 250 ILLMGlFSiYtGfIY 264 (437)
+.|..++.++.|+||
T Consensus 8 l~ly~Fw~FFagLi~ 22 (37)
T d1eysh2 8 ITIWAFWLFFFGLII 22 (37)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 578888999999987
No 3
>d2axpa1 c.37.1.1 (A:2-165) Hypothetical protein YorR {Bacillus subtilis [TaxId: 1423]}
Probab=8.78 E-value=52 Score=26.21 Aligned_cols=14 Identities=29% Similarity=0.641 Sum_probs=11.8
Q ss_pred CchhHHHHHHHHHh
Q 038653 1 MASKLRFIREEMSK 14 (437)
Q Consensus 1 meRklRf~~~ei~k 14 (437)
.||+|||+++.|+.
T Consensus 80 terqlrfiedkika 93 (164)
T d2axpa1 80 TERQLRFIEDKIKA 93 (164)
T ss_dssp CHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHhhh
Confidence 38999999999943
No 4
>d1s3ga2 g.41.2.1 (A:126-160) Microbial and mitochondrial ADK, insert "zinc finger" domain {Bacillus globisporus [TaxId: 1459]}
Probab=8.30 E-value=27 Score=22.04 Aligned_cols=13 Identities=31% Similarity=0.697 Sum_probs=10.1
Q ss_pred Hhhhhhccccccc
Q 038653 260 TGLIYNEFFSAPS 272 (437)
Q Consensus 260 tGfIYND~FS~sl 272 (437)
||-+||+.|..|-
T Consensus 8 CG~~Yh~~~~pPk 20 (35)
T d1s3ga2 8 CGTSYHLLFNPPQ 20 (35)
T ss_dssp TCCEEETTTBCCS
T ss_pred cCchhccccCCCC
Confidence 6888999887654
No 5
>d1p7ga2 d.44.1.1 (A:104-222) Fe superoxide dismutase (FeSOD) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=8.27 E-value=26 Score=27.74 Aligned_cols=16 Identities=31% Similarity=0.441 Sum_probs=12.6
Q ss_pred cccccccccCCCCCccc
Q 038653 266 EFFSAPSELFGPSAYAC 282 (437)
Q Consensus 266 D~FS~slnlFg~S~w~~ 282 (437)
+|-....++|| |+|.|
T Consensus 25 ~f~~~a~~~fG-sGW~w 40 (119)
T d1p7ga2 25 EFSQAAKNVEG-VGWAI 40 (119)
T ss_dssp HHHHHHHTCSS-SEEEE
T ss_pred HHHHhhhcccc-ceEEE
Confidence 35566789999 99987
No 6
>d1tueb_ b.91.1.1 (B:) E2 regulatory, transactivation domain {Human papillomavirus type 18 [TaxId: 333761]}
Probab=8.10 E-value=3.6e+02 Score=22.64 Aligned_cols=37 Identities=19% Similarity=0.374 Sum_probs=26.0
Q ss_pred HHHHhHHHHHH-HHHHHHHHhcccccccCCceEEEEEEeecCC
Q 038653 140 IADQFEQWNLL-MEKVIYRTLNMLSMDVTKKCLVAESWCPVSA 181 (437)
Q Consensus 140 ia~~l~~W~~~-KEKaIY~tLN~~~~D~t~k~LiaE~W~P~~~ 181 (437)
+..+|+.|... +|-+|++.-..-.+ + -+|-.=+|.-.
T Consensus 31 L~dqi~yW~~vR~E~~Lly~AR~~G~--~---~lG~q~VP~l~ 68 (194)
T d1tueb_ 31 IDSQIQYWQLIRWENAIFFAAREHGI--Q---TLNHQVVPAYN 68 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTC--S---EETTEECCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCC--C---ccCCEeCCchH
Confidence 45789999999 99999997765432 2 24555567543
No 7
>d1aopa2 d.58.36.1 (A:346-425) Sulfite reductase, domains 1 and 3 {Escherichia coli [TaxId: 562]}
Probab=8.07 E-value=99 Score=22.27 Aligned_cols=26 Identities=15% Similarity=0.179 Sum_probs=20.7
Q ss_pred EEEEEeecCChhHHHHHHHHHHHhcC
Q 038653 172 VAESWCPVSAANQIENTLQRATINSN 197 (437)
Q Consensus 172 iaE~W~P~~~~~~I~~aL~~~~~~sg 197 (437)
+--+++|.++++.|...|++..-.++
T Consensus 53 lil~~V~~~~~~~i~~~L~~~Gl~~~ 78 (80)
T d1aopa2 53 LIIAGVPESEKAKIEKIAKESGLMNA 78 (80)
T ss_dssp EEEEEEEGGGHHHHHHHHHHTTTTCC
T ss_pred eEecCCCHHHHHHHHHHHHHcCCCCC
Confidence 44679999999999999988654443
No 8
>d2nnua1 b.91.1.1 (A:1-200) E2 regulatory, transactivation domain {Human papillomavirus type 16 [TaxId: 333760]}
Probab=7.76 E-value=3.8e+02 Score=22.54 Aligned_cols=37 Identities=19% Similarity=0.439 Sum_probs=25.6
Q ss_pred HHHHhHHHHHH-HHHHHHHHhcccccccCCceEEEEEEeecCC
Q 038653 140 IADQFEQWNLL-MEKVIYRTLNMLSMDVTKKCLVAESWCPVSA 181 (437)
Q Consensus 140 ia~~l~~W~~~-KEKaIY~tLN~~~~D~t~k~LiaE~W~P~~~ 181 (437)
+..+|+.|... ||-+|++.-..--+ + -+|-.=+|.-.
T Consensus 26 L~dqi~yW~lvR~E~~Lly~AR~~G~--~---~lG~q~VP~l~ 63 (200)
T d2nnua1 26 LRDHIDYWKHMRLECAIYYKAREMGF--K---HINHQVVPTLA 63 (200)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTC--S---EETTEECCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCC--C---eeCCEeCCchH
Confidence 45789999999 99999997665432 2 14455566543
No 9
>d1q8ka2 d.58.51.1 (A:186-302) eIF-2-alpha, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.95 E-value=1.4e+02 Score=23.21 Aligned_cols=55 Identities=13% Similarity=0.131 Sum_probs=33.3
Q ss_pred EEEeec-CChhHHHHHHHHHHHhcCCcccceeEecccCCCCCCc---cCCCceeccee-eccce
Q 038653 174 ESWCPV-SAANQIENTLQRATINSNSQIGAIFQVLQIKGSLPTY---FPDKQFCFCFS-RNCGC 232 (437)
Q Consensus 174 E~W~P~-~~~~~I~~aL~~~~~~sgs~v~~i~~~i~t~~~PPTy---frTNkFT~~FQ-vNPa~ 232 (437)
|.+|.. +-++.|+.||+.|...+...++--++-+ -||.| ..+..+..+.+ ++.|+
T Consensus 10 evtc~~~dGIe~IK~AL~aa~~~s~e~~~I~I~~i----gaP~Y~i~v~a~D~k~g~~~l~~a~ 69 (117)
T d1q8ka2 10 EVACYGYEGIDAVKEALRAGLNCSTENMPIKINLI----APPRYVMTTTTLERTEGLSVLSQAM 69 (117)
T ss_dssp CEECCSTTTHHHHHHHHHHHHHSSBTTBCEEEEEE----ETTEEEEEEECSSHHHHHHHHHHHH
T ss_pred EEEEcCcchHHHHHHHHHHHHhcCCCCCcEEEEEE----CCCeEEEEEecCCHHHHHHHHHHHH
Confidence 466765 4589999999988765544433223322 48888 35556665555 44443
No 10
>d1idsa2 d.44.1.1 (A:86-199) Fe superoxide dismutase (FeSOD) {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=6.32 E-value=36 Score=26.51 Aligned_cols=17 Identities=29% Similarity=0.569 Sum_probs=13.6
Q ss_pred hcccccccccCCCCCccc
Q 038653 265 NEFFSAPSELFGPSAYAC 282 (437)
Q Consensus 265 ND~FS~slnlFg~S~w~~ 282 (437)
.+|-...+++|| |+|.|
T Consensus 26 ~~f~~~a~~~~G-sGW~w 42 (114)
T d1idsa2 26 AQFHAAATTVQG-SGWAA 42 (114)
T ss_dssp HHHHHHHHCCSS-SEEEE
T ss_pred HHHHHhhhcccc-ceeEE
Confidence 356677889999 99986
Done!