Query 038655
Match_columns 275
No_of_seqs 178 out of 1256
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 13:17:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038655.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/038655hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02202 carbonate dehydratase 100.0 4.2E-75 9.2E-80 528.8 23.6 253 13-269 11-268 (284)
2 COG3338 Cah Carbonic anhydrase 100.0 5.9E-71 1.3E-75 473.6 18.3 227 30-266 23-249 (250)
3 cd03121 alpha_CARP_X_XI_like C 100.0 3.8E-69 8.2E-74 484.6 21.8 223 44-268 1-256 (256)
4 cd03124 alpha_CA_prokaryotic_l 100.0 4.2E-69 9.1E-74 473.4 21.3 214 44-264 1-215 (216)
5 cd03119 alpha_CA_I_II_III_XIII 100.0 1E-68 2.2E-73 482.7 22.2 227 33-266 3-258 (259)
6 PF00194 Carb_anhydrase: Eukar 100.0 3.4E-67 7.4E-72 472.2 18.6 225 35-266 1-255 (256)
7 cd03126 alpha_CA_XII_XIV Carbo 100.0 1.6E-66 3.5E-71 465.8 21.1 215 44-266 1-248 (249)
8 cd03125 alpha_CA_VI Carbonic a 100.0 5.9E-66 1.3E-70 462.0 21.2 217 44-266 1-247 (249)
9 cd03122 alpha_CARP_receptor_li 100.0 7E-66 1.5E-70 462.7 21.3 217 44-264 1-252 (253)
10 cd03150 alpha_CA_IX Carbonic a 100.0 2.7E-65 5.9E-70 457.2 20.7 218 44-267 1-246 (247)
11 cd03123 alpha_CA_VI_IX_XII_XIV 100.0 3E-65 6.5E-70 457.3 20.9 217 44-266 1-247 (248)
12 cd03149 alpha_CA_VII Carbonic 100.0 2.8E-64 6.1E-69 448.0 20.3 205 61-266 1-235 (236)
13 cd03118 alpha_CA_V Carbonic an 100.0 3.3E-64 7.1E-69 447.6 20.6 205 61-266 1-235 (236)
14 cd03120 alpha_CARP_VIII Carbon 100.0 7.4E-64 1.6E-68 450.3 22.0 214 46-266 2-255 (256)
15 KOG0382 Carbonic anhydrase [Ge 100.0 9.7E-64 2.1E-68 448.1 20.5 229 33-267 3-261 (262)
16 PLN02179 carbonic anhydrase 100.0 4.6E-63 9.9E-68 438.6 19.8 206 23-232 25-230 (235)
17 cd03117 alpha_CA_IV_XV_like Ca 100.0 2.7E-62 5.8E-67 434.9 19.4 201 61-265 1-234 (234)
18 cd00326 alpha_CA Carbonic anhy 100.0 2.1E-61 4.5E-66 427.6 19.7 203 61-264 1-227 (227)
19 KOG0427 Ubiquitin conjugating 43.9 89 0.0019 25.5 6.0 60 93-163 38-106 (161)
20 PF09211 DUF1958: Domain of un 30.8 13 0.00027 26.6 -0.6 16 130-145 8-23 (65)
21 PF13491 DUF4117: Domain of un 21.6 1.1E+02 0.0023 25.1 3.3 48 2-50 1-48 (171)
22 PF06594 HCBP_related: Haemoly 21.5 1.5E+02 0.0034 18.7 3.4 13 118-130 24-36 (43)
No 1
>PLN02202 carbonate dehydratase
Probab=100.00 E-value=4.2e-75 Score=528.78 Aligned_cols=253 Identities=40% Similarity=0.776 Sum_probs=218.3
Q ss_pred HHHHHHHHhccccccccCCCCCcccCCCCCCCCCCccccCcCcccCCCCCCCCCceeeCCceeeecCCCCceecccCCcc
Q 038655 13 FFAVILLLSGSAMSKEVDEEKEFNYEKGGEHGPDRWGEIHSEWSACKNGTMQSPIDLLNERVEVVSHLGRLKRSYKPSNA 92 (275)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~w~Y~~~~~~gP~~W~~l~~~~~~C~~G~~QSPInI~~~~~~~~~~l~~l~~~y~~~~~ 92 (275)
+++++|+|+.+...+ ++..+|+|+ +.+||++|+.++++|..|++|++||||||.+..+...+.+.+|.++|.....
T Consensus 11 ~~~~~~~~~~~~~~~--~~~~~w~Y~--~~~GP~~W~~l~~~~~~C~~G~~QSPIdI~~~~~~~~~~l~~l~~~~~~~~~ 86 (284)
T PLN02202 11 FFAIALICIAPADAQ--TEGVVFGYK--GKNGPNQWGHLNPHFTKCAVGKLQSPIDIQRRQIFYNHKLESIHRDYYFTNA 86 (284)
T ss_pred HHHHHHHHHHhhhcc--cCCCCcCCC--CCCChhhhhhcCcchhhccCCCccCCEeecCCccccCCCCCceeeeccCCce
Confidence 566666666552222 345689995 6789999999999999999999999999998776556778889988877778
Q ss_pred EEeecCceeEEEecCCCceEEEcCeEEEeeeeeecCCCCCccccccccceeeeeeecCCCceEEEEEEeeeCCCCchhHH
Q 038655 93 TLRNRGHDIMLQWKGGAGTILINGTKYVLQQCHWHSPSEHTIDGKRFALEAHMVHESHDGKVAVVGIVYKIGRPDSFLAS 172 (275)
Q Consensus 93 ~l~N~G~tv~v~~~~~~~~~~i~G~~Y~l~q~HFH~gSEHtidG~~~~~E~HiVh~~~~~~laVlav~~~~g~~n~~l~~ 172 (275)
++.|+||++++.+.++.+.+.++|.+|.|.||||||||||+|||++|||||||||++.+|++|||||||++|+.|++++.
T Consensus 87 ~l~N~Ghtv~v~~~~~~~~~~~~g~~Y~L~QfHFH~gSEH~idG~~yp~E~H~VH~~~~g~laVlgv~~~~g~~n~~l~~ 166 (284)
T PLN02202 87 TLVNHVCNVAMFFGEGAGDVIIDNKNYTLLQMHWHTPSEHHLHGVQYAAELHMVHQAKDGSFAVVASLFKIGTEEPFLSQ 166 (284)
T ss_pred EEEECCccEEEEEcCCCCeeEECCcEEEEEEEEecCCcccEECCeeCCeEEEEEEEcCCCCEEEEEEEEeccCCChHHHH
Confidence 99999999999996555688899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccCC--CCc---eeeecccCCCCccCCCCceEEEeeeccCCCCccceEEEEeceecccCHHHHHHHHHhccCC
Q 038655 173 ISDHLRNISGS--NER---DATVGVIDPRAIKIGSSKYYRYIGSLTVPPCTENVTWTIVRKVRSVTREQVRVLRVAVHDE 247 (275)
Q Consensus 173 i~~~l~~i~~~--~~~---~~~~~~~~l~~L~~~~~~yy~Y~GSLTTPPC~E~V~WiV~~~pi~IS~~Ql~~fr~~~~~~ 247 (275)
|++.+..+... ++. ...+..|++..|+|...+||+|.||||||||+|+|+|+||++|++||.+||++||++.+..
T Consensus 167 i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~llp~~~~yy~Y~GSLTTPPC~E~V~W~V~~~pi~IS~~Ql~~fr~~~~~~ 246 (284)
T PLN02202 167 MKDKLVKLKEERFKGNHTAQVEVGKIDTRHIERKTRKYFRYIGSLTTPPCSENVSWTILGKVRSMSKEQVELLRSPLDKS 246 (284)
T ss_pred HHHHHHHhhcccccCcccccccccccCHHHhCccccceEEEeccccCCCCCCceEEEEeCceEEcCHHHHHHHHHhhhcc
Confidence 99988877431 111 1223468888888888999999999999999999999999999999999999999987655
Q ss_pred CCCCCCCCCCCCCceEEEeCCC
Q 038655 248 SNTNARPLQPINMRSVKLYKPD 269 (275)
Q Consensus 248 ~~~N~Rp~Qpln~R~V~~~~~~ 269 (275)
+.+|+||+||||||.|+++.+.
T Consensus 247 l~~N~RpvQplngR~V~~~~~~ 268 (284)
T PLN02202 247 FKNNSRPCQPLNGRRVEMFHDH 268 (284)
T ss_pred cCCCCCCCCCCCCCEEEEecCe
Confidence 7899999999999999988753
No 2
>COG3338 Cah Carbonic anhydrase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.9e-71 Score=473.58 Aligned_cols=227 Identities=36% Similarity=0.678 Sum_probs=204.3
Q ss_pred CCCCCcccCCCCCCCCCCccccCcCcccCCCCCCCCCceeeCCceeeecCCCCceecccCCccEEeecCceeEEEecCCC
Q 038655 30 DEEKEFNYEKGGEHGPDRWGEIHSEWSACKNGTMQSPIDLLNERVEVVSHLGRLKRSYKPSNATLRNRGHDIMLQWKGGA 109 (275)
Q Consensus 30 ~~~~~w~Y~~~~~~gP~~W~~l~~~~~~C~~G~~QSPInI~~~~~~~~~~l~~l~~~y~~~~~~l~N~G~tv~v~~~~~~ 109 (275)
+.+.+|+|. |..||++|+.|+++|..|++|++||||||...... ..+.++.++|.+...+|.||||||++.+.++.
T Consensus 23 a~~~~WgY~--g~~GPEhWg~L~~df~~C~~Gk~QSPIdI~~~~~~--~~~~~l~~~Y~~s~~~i~nnghTiqv~~~~~~ 98 (250)
T COG3338 23 AAEVHWGYT--GKEGPEHWGELSPDFEACAEGKNQSPIDIEHAVDV--QDKPPLQLNYQPSAVTIKNNGHTIQVNFEPGS 98 (250)
T ss_pred ccccccccc--CCcCchhhhhcCchhhHhhccccCCCccHHHheec--ccccchheeeccCceEEEecCcEEEEeccCCC
Confidence 344899995 67799999999999999999999999999765332 24567888998899999999999999998776
Q ss_pred ceEEEcCeEEEeeeeeecCCCCCccccccccceeeeeeecCCCceEEEEEEeeeCCCCchhHHHHHHhhcccCCCCceee
Q 038655 110 GTILINGTKYVLQQCHWHSPSEHTIDGKRFALEAHMVHESHDGKVAVVGIVYKIGRPDSFLASISDHLRNISGSNERDAT 189 (275)
Q Consensus 110 ~~~~i~G~~Y~l~q~HFH~gSEHtidG~~~~~E~HiVh~~~~~~laVlav~~~~g~~n~~l~~i~~~l~~i~~~~~~~~~ 189 (275)
..+.++|..|.|.|||||.||||.|||+.||||+||||.+.+|.|+|||||++.|..|+.|+.|.+.++.... +.++.
T Consensus 99 n~l~~~gk~y~L~qfHFH~PsEhlv~Gk~~pmEaHFVHkd~~g~L~Vl~v~~~~g~eN~~l~~l~~~fP~~~g--e~~~l 176 (250)
T COG3338 99 NHLRYDGKTYQLVQFHFHAPSEHLVDGKSFPMEAHFVHKDAKGTLAVLAVLLQAGAENPELAPLWEGFPQKPG--EEETL 176 (250)
T ss_pred cceeecCcEEEEEEEEecCchHHhhccccccceeeeeecCCCCCEEEEEEeeecCCCCcchhHHHHhcccccc--cccce
Confidence 7899999999999999999999999999999999999999999999999999999999999999999877643 12222
Q ss_pred ecccCCCCccCCCCceEEEeeeccCCCCccceEEEEeceecccCHHHHHHHHHhccCCCCCCCCCCCCCCCceEEEe
Q 038655 190 VGVIDPRAIKIGSSKYYRYIGSLTVPPCTENVTWTIVRKVRSVTREQVRVLRVAVHDESNTNARPLQPINMRSVKLY 266 (275)
Q Consensus 190 ~~~~~l~~L~~~~~~yy~Y~GSLTTPPC~E~V~WiV~~~pi~IS~~Ql~~fr~~~~~~~~~N~Rp~Qpln~R~V~~~ 266 (275)
...+|++.|+|...+||+|+||||||||+|+|.|+|+++|+.+|++|+++|.+++. .|.||+||+|+|.|..+
T Consensus 177 ~~~id~~~~lP~s~~yyty~GSLTTPPCsEgV~W~Vl~ep~evs~~qi~~f~~~~~----~N~RPVQp~N~R~I~~~ 249 (250)
T COG3338 177 DETIDLNAFLPESRNYYTYNGSLTTPPCSEGVTWIVLKEPIEVSQEQIAEFSKLMG----HNARPVQPLNDRLILEA 249 (250)
T ss_pred eeccChhHhCccccceEEecccccCCCcccCceEEEEcCcccCCHHHHHHHHHHhC----CCCCCCcCCCCcEEEec
Confidence 24599999999999999999999999999999999999999999999999999874 89999999999999854
No 3
>cd03121 alpha_CARP_X_XI_like Carbonic anhydrase alpha related protein: groups X, XI and related proteins. This subgroup contains carbonic anhydrase related proteins (CARPs) X and XI, which have been implicated in various biological processes of the central nervous system. CARPs are sequence similar to carbonic anhydrases. Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism. CARPs have lost conserved histidines involved in zinc binding and consequently their catalytic activity. CARP XI plays a role in the development of gastrointestinal stromal tumors.
Probab=100.00 E-value=3.8e-69 Score=484.61 Aligned_cols=223 Identities=29% Similarity=0.498 Sum_probs=198.1
Q ss_pred CCCCccccCcCcccCCCCCCCCCceeeCCceeeecCCCCceeccc-CCccEEeecCceeEEEecCCCceEEEcC----eE
Q 038655 44 GPDRWGEIHSEWSACKNGTMQSPIDLLNERVEVVSHLGRLKRSYK-PSNATLRNRGHDIMLQWKGGAGTILING----TK 118 (275)
Q Consensus 44 gP~~W~~l~~~~~~C~~G~~QSPInI~~~~~~~~~~l~~l~~~y~-~~~~~l~N~G~tv~v~~~~~~~~~~i~G----~~ 118 (275)
||++|+.++++|..|++|++||||||.+..+...+.+.+|.+.|. +...+|.|+||||++.+.++ +.+.+.| .+
T Consensus 1 GP~~W~~~~~~~~~C~~G~~QSPI~I~~~~~~~~~~l~~L~~~~~~~~~~~l~N~Ghtv~v~~~~~-~~~~i~gG~l~~~ 79 (256)
T cd03121 1 GPSFWGLVNSAWNLCSKGRRQSPVDIEPSRLLFDPFLTPLRIDTGRKVSGTFYNTGRHVSFRPDKD-PVVNISGGPLSYR 79 (256)
T ss_pred CCCcccccCCchhhccCCCCcCCEeEeccceEECCCCCceeeccCCCCceEEEECCEEEEEEECCC-CceEEeCCCCCCc
Confidence 799999999999999999999999999988777778888999876 67789999999999998643 4566744 57
Q ss_pred EEeeeeeecC------CCCCccccccccceeeeeeecCC------------CceEEEEEEeeeCC-CCchhHHHHHHhh-
Q 038655 119 YVLQQCHWHS------PSEHTIDGKRFALEAHMVHESHD------------GKVAVVGIVYKIGR-PDSFLASISDHLR- 178 (275)
Q Consensus 119 Y~l~q~HFH~------gSEHtidG~~~~~E~HiVh~~~~------------~~laVlav~~~~g~-~n~~l~~i~~~l~- 178 (275)
|+|.|||||| ||||+|||++|||||||||++.+ +++|||||||++|+ +|+.++.|++.++
T Consensus 80 Y~l~Q~HFHwG~~~~~gSEH~idG~~yp~E~HlVH~n~~~y~~~~~A~~~~~glaVvgv~~~~g~~~n~~l~~i~~~l~~ 159 (256)
T cd03121 80 YRLEEIRLHFGREDEQGSEHTVNGQAFPGEVQLIHYNSELYPNFSEASKSPNGLVIVSLFVKIGETSNPELRRLTNRDTI 159 (256)
T ss_pred EEEEEEEEecCCCCCCCCceeeCCcccCceEEEEEEcccccCCHHHHhcCCCCeEEEEEEEeecccCCHHHHHHHHhccc
Confidence 9999999998 79999999999999999999875 89999999999997 6999999999998
Q ss_pred -cccCCCCceeeecccCCCCccCCCCceEEEeeeccCCCCccceEEEEeceecccCHHHHHHHHHhccC-------CCCC
Q 038655 179 -NISGSNERDATVGVIDPRAIKIGSSKYYRYIGSLTVPPCTENVTWTIVRKVRSVTREQVRVLRVAVHD-------ESNT 250 (275)
Q Consensus 179 -~i~~~~~~~~~~~~~~l~~L~~~~~~yy~Y~GSLTTPPC~E~V~WiV~~~pi~IS~~Ql~~fr~~~~~-------~~~~ 250 (275)
.+.. +++...+..|++..|+|...+||+|.||||||||+|+|+|+||++|++||.+||++||+++.. .+.+
T Consensus 160 ~~i~~-~~~~~~~~~~~l~~Llp~~~~yy~Y~GSLTTPPC~E~V~W~V~~~pi~Is~~Ql~~fr~l~~~~~~~~~~~~~~ 238 (256)
T cd03121 160 TSIRY-KGDAYFLQDLSIELLLPETDHYITYEGSLTSPGCHETVTWIILNKPIYITKEQMHSLRLLSQNSPSQEKAPMSP 238 (256)
T ss_pred ccccc-CCceeecCCCCHHHHCCCCCceEEeeccccCCCCCcceEEEEeCccEecCHHHHHHHHHHhhccCCcccCcCCC
Confidence 7765 455556667889999998899999999999999999999999999999999999999998742 1468
Q ss_pred CCCCCCCCCCceEEEeCC
Q 038655 251 NARPLQPINMRSVKLYKP 268 (275)
Q Consensus 251 N~Rp~Qpln~R~V~~~~~ 268 (275)
|+||+||||||.|+++.+
T Consensus 239 N~Rp~Q~ln~R~V~~~~~ 256 (256)
T cd03121 239 NFRPVQPLNNRPVRTNIN 256 (256)
T ss_pred CCCCCCCCCCCeEEeeCC
Confidence 999999999999998653
No 4
>cd03124 alpha_CA_prokaryotic_like Carbonic anhydrase alpha, prokaryotic-like subfamily. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidines. This sub-family includes bacterial carbonic anhydrase alpha, as well as plant enzymes such as tobacco nectarin III and yam dioscorin and, carbonic anhydrases from molluscs, such as nacrein, which are part of the organic matrix layer in shells. Other members of this family may be involved in maintaining pH balance, in facilitating transport of carb
Probab=100.00 E-value=4.2e-69 Score=473.41 Aligned_cols=214 Identities=44% Similarity=0.829 Sum_probs=194.7
Q ss_pred CCCCccccCcCcccCCCCCCCCCceeeCCceeeecCCCCceecccCCccEEeecCceeEEEecCCCceEEEcCeEEEeee
Q 038655 44 GPDRWGEIHSEWSACKNGTMQSPIDLLNERVEVVSHLGRLKRSYKPSNATLRNRGHDIMLQWKGGAGTILINGTKYVLQQ 123 (275)
Q Consensus 44 gP~~W~~l~~~~~~C~~G~~QSPInI~~~~~~~~~~l~~l~~~y~~~~~~l~N~G~tv~v~~~~~~~~~~i~G~~Y~l~q 123 (275)
||++|+.++++|..|++|++||||||.+..+...+ +.+|.+.|.+..+++.|+||++++.+.++.+.+.++|.+|+|.|
T Consensus 1 gp~~W~~~~~~~~~C~~G~~QSPI~I~~~~~~~~~-~~~l~~~~~~~~~~l~N~G~tv~~~~~~~~~~~~~~g~~Y~l~q 79 (216)
T cd03124 1 GPEHWGNLDPEFALCATGKNQSPIDITTKAVVSDK-LPPLNYNYKPTSATLVNNGHTIQVNFEGNGGTLTIDGETYQLLQ 79 (216)
T ss_pred CCcchhhCCcchhhhcCCCCCCCEeeccCceeecC-CCCceeeccCCceEEEECCceEEEEEcCCCCeEEECCcEEEEEE
Confidence 79999999999999999999999999997766544 88899988777889999999999999865568899999999999
Q ss_pred eeecCCCCCccccccccceeeeeeecCCCceEEEEEEeeeCCCCchhHHHHHHhhcccCCCCceeeeccc-CCCCccCCC
Q 038655 124 CHWHSPSEHTIDGKRFALEAHMVHESHDGKVAVVGIVYKIGRPDSFLASISDHLRNISGSNERDATVGVI-DPRAIKIGS 202 (275)
Q Consensus 124 ~HFH~gSEHtidG~~~~~E~HiVh~~~~~~laVlav~~~~g~~n~~l~~i~~~l~~i~~~~~~~~~~~~~-~l~~L~~~~ 202 (275)
|||||||||+|||++|||||||||++.++++|||||||++++.|+++++|++.+..+.. +...+..+ ++..|+|+.
T Consensus 80 ~HfH~gSEH~idg~~y~~ElH~Vh~~~~~~laVl~v~~~~~~~n~~l~~i~~~l~~~~~---~~~~~~~~~~~~~llp~~ 156 (216)
T cd03124 80 FHFHSPSEHLINGKRYPLEAHLVHKSKDGQLAVVAVLFEEGKENPFLKKILDNMPKKEG---TEVNLPAILDPNELLPES 156 (216)
T ss_pred EEecCCcccEeccccCCceeeEEEEcCCCCEEEEEEEEeecCCCHHHHHHHHhhhhhcC---CceeccCCCCHHHhcccC
Confidence 99999999999999999999999999999999999999999999999999999887643 33445556 888999988
Q ss_pred CceEEEeeeccCCCCccceEEEEeceecccCHHHHHHHHHhccCCCCCCCCCCCCCCCceEE
Q 038655 203 SKYYRYIGSLTVPPCTENVTWTIVRKVRSVTREQVRVLRVAVHDESNTNARPLQPINMRSVK 264 (275)
Q Consensus 203 ~~yy~Y~GSLTTPPC~E~V~WiV~~~pi~IS~~Ql~~fr~~~~~~~~~N~Rp~Qpln~R~V~ 264 (275)
.+||+|.||||||||+|+|+|+||++|++||.+||++||+++ +.+|+||+||||||.|+
T Consensus 157 ~~y~~Y~GSLTtPpC~E~V~W~V~~~~~~is~~Ql~~f~~~~---~~~N~Rp~Q~ln~R~v~ 215 (216)
T cd03124 157 RSYYRYEGSLTTPPCSEGVRWIVLKQPITISKEQLAKFRAAV---YPNNARPVQPLNGREVL 215 (216)
T ss_pred CceEEEeeecCCCCCcCceEEEecCCccccCHHHHHHHHHhc---cCCCCCCCCCCCCceee
Confidence 999999999999999999999999999999999999999985 35899999999999997
No 5
>cd03119 alpha_CA_I_II_III_XIII Carbonic anhydrase alpha, isozymes I, II, and III and XIII. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidines. This vertebrate subgroup comprises isozymes I, II, and III, which are cytoplasmic enzymes. CA I, for example, is expressed in erythrocyes of many vertebrates; CA II is the most active cytosolic isozyme; while it is being expressed nearly ubiquitously, it comprises 95% of the renal carbonic anhydrase and is required for renal acidification; C
Probab=100.00 E-value=1e-68 Score=482.67 Aligned_cols=227 Identities=33% Similarity=0.582 Sum_probs=198.0
Q ss_pred CCcccCCCCCCCCCCccccCcCcccCCCCCCCCCceeeCCceeeecCCCCceecccCC-ccEEeecCceeEEEecCCCce
Q 038655 33 KEFNYEKGGEHGPDRWGEIHSEWSACKNGTMQSPIDLLNERVEVVSHLGRLKRSYKPS-NATLRNRGHDIMLQWKGGAGT 111 (275)
Q Consensus 33 ~~w~Y~~~~~~gP~~W~~l~~~~~~C~~G~~QSPInI~~~~~~~~~~l~~l~~~y~~~-~~~l~N~G~tv~v~~~~~~~~ 111 (275)
.+|+|+ +..||++|+.+++ .|. |++||||||.+..+..++.+.+|.++|... ..+|.|+||||++.+.++.+.
T Consensus 3 ~~w~Y~--~~~gp~~W~~~~~---~~~-G~~QSPI~I~~~~~~~~~~l~~l~~~y~~~~~~~l~N~G~tv~~~~~~~~~~ 76 (259)
T cd03119 3 HHWGYD--SHNGPEHWHELFP---IAK-GDRQSPIDIKTKDAKHDPSLKPLSVSYDPATAKTILNNGHSFNVEFDDTDDR 76 (259)
T ss_pred cccCCC--CCCCcccccccCc---CCC-CCCCCCEeEccCeeeEcCCCCceecccccCcceEEEeCCeeEEEEeCCCCCc
Confidence 469995 5779999998654 465 999999999988877778888899988643 569999999999998754444
Q ss_pred EEEcC----eEEEeeeeeecC------CCCCccccccccceeeeeeecCC-----------CceEEEEEEeeeCCCCchh
Q 038655 112 ILING----TKYVLQQCHWHS------PSEHTIDGKRFALEAHMVHESHD-----------GKVAVVGIVYKIGRPDSFL 170 (275)
Q Consensus 112 ~~i~G----~~Y~l~q~HFH~------gSEHtidG~~~~~E~HiVh~~~~-----------~~laVlav~~~~g~~n~~l 170 (275)
+.+.| .+|+|.|||||| ||||+|||++|||||||||++.+ +++|||||||++|+.|+++
T Consensus 77 ~~~~gg~l~~~Y~l~q~HfHwG~~~~~gSEH~idg~~~p~E~HlVH~n~~y~~~~~A~~~~~glaVvgvl~~~g~~n~~l 156 (259)
T cd03119 77 SVLRGGPLTGSYRLRQFHFHWGSSDDHGSEHTVDGVKYAAELHLVHWNSKYGSFGEAAKQPDGLAVVGVFLKVGEANPEL 156 (259)
T ss_pred ceEeCCCCCCcEEEEEEEEEeCCCCCCCccceecCccccceEEEEEecccCCCHHHHhcCCCCeEEEEEEEEecccchhH
Confidence 55543 589999999998 79999999999999999999864 7899999999999999999
Q ss_pred HHHHHHhhcccCCCCceeeecccCCCCccCCCCceEEEeeeccCCCCccceEEEEeceecccCHHHHHHHHHhccC----
Q 038655 171 ASISDHLRNISGSNERDATVGVIDPRAIKIGSSKYYRYIGSLTVPPCTENVTWTIVRKVRSVTREQVRVLRVAVHD---- 246 (275)
Q Consensus 171 ~~i~~~l~~i~~~~~~~~~~~~~~l~~L~~~~~~yy~Y~GSLTTPPC~E~V~WiV~~~pi~IS~~Ql~~fr~~~~~---- 246 (275)
+.|++.|+.+.. .++...+..|++.+|+|+..+||+|.||||||||+|+|+|+||++|+.||.+||++||+++..
T Consensus 157 ~~i~~~l~~i~~-~~~~~~~~~~~l~~llp~~~~yy~Y~GSLTTPpC~E~V~W~V~~~~i~is~~Ql~~fr~l~~~~~~~ 235 (259)
T cd03119 157 QKVLDALDSIKT-KGKQAPFTNFDPSCLLPASLDYWTYPGSLTTPPLLECVTWIVLKEPISVSSEQMAKFRSLLFNAEGE 235 (259)
T ss_pred HHHHHHHHHhcc-CCceeeecCCCHHHHcCCCCCeEEeccccCCCCCCCceEEEEeCCeeeCCHHHHHHHHHHhhccCCC
Confidence 999999999876 455555667999999998889999999999999999999999999999999999999998753
Q ss_pred ---CCCCCCCCCCCCCCceEEEe
Q 038655 247 ---ESNTNARPLQPINMRSVKLY 266 (275)
Q Consensus 247 ---~~~~N~Rp~Qpln~R~V~~~ 266 (275)
.+.+|+||+||||||.|+.+
T Consensus 236 ~~~~~~~N~Rp~Qpln~R~V~~~ 258 (259)
T cd03119 236 PPCPMVDNWRPPQPLKGRKVRAS 258 (259)
T ss_pred ccccccCCCCCCCCCCCCEEEec
Confidence 24689999999999999875
No 6
>PF00194 Carb_anhydrase: Eukaryotic-type carbonic anhydrase; InterPro: IPR001148 Carbonic anhydrases (CA: 4.2.1.1 from EC) are zinc metalloenzymes which catalyse the reversible hydration of carbon dioxide to bicarbonate [, ]. CAs have essential roles in facilitating the transport of carbon dioxide and protons in the intracellular space, across biological membranes and in the layers of the extracellular space; they are also involved in many other processes, from respiration and photosynthesis in eukaryotes to cyanate degradation in prokaryotes. There are five known evolutionarily distinct CA families (alpha, beta, gamma, delta and epsilon) that have no significant sequence identity and have structurally distinct overall folds. Some CAs are membrane-bound, while others act in the cytosol; there are several related proteins that lack enzymatic activity. The active site of alpha-CAs is well described, consisting of a zinc ion coordinated through 3 histidine residues and a water molecule/hydroxide ion that acts as a potent nucleophile. The enzyme employs a two-step mechanism: in the first step, there is a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide; in the second step, the active site is regenerated by the ionisation of the zinc-bound water molecule and the removal of a proton from the active site []. Beta- and gamma-CAs also employ a zinc hydroxide mechanism, although at least some beta-class enzymes do not have water directly coordinated to the metal ion. The alpha-CAs are found predominantly in animals but also in bacteria and green algae. There are at least 15 isoforms found in mammals, which can be subdivided into cytosolic CAs (CA-I, CA-II, CA-III, CA-VII and CA XIII), mitochondrial CAs (CA-VA and CA-VB), secreted CAs (CA-VI), membrane-associated (CA-IV, CA-IX, CA-XII and CA-XIV) and those without CA activity, the CA-related proteins (CA-RP VIII, X and XI). The beta-CAs are highly abundant in plants, diatoms, eubacteria and archaea [, ]. The beta-CAs are far more diverse in sequence than other classes, and can be divided into different clades based on sequence identity, with the plant enzymes forming two clades representing dicotyledonous and monocotyledonous plants. Characterisation of these enzymes reveals sharp differences between the beta class, which forms dimers, tetramers, hexamers and octomers, and the alpha and gamma classes, which form strictly monomers and trimers. The gamma-CAs may be the most ancient form of carbonic anhydrases, having evolved long before the alpha class, to which it is more closely related than to the beta-class [, ]. The reaction mechanism of the gamma-class is similar to that of the alpha-class, even though the overall folds are dissimilar and the active site residues differ. The delta-CAs are found in marine algae and dinoflagellates []. The epsilon-CAs are found in prokaryotes such as Thiobacillus neapolitanus (Halothiobacillus neapolitanus) in which it is a component of the carboxysome shell, where it could supply the active sites of RuBisCO in the carboxysome with the high concentrations of carbon dioxide necessary for optimal RuBisCO activity and efficient carbon fixation []. This entry represents a domain found in alpha class carbonic anhydrases. More information about these proteins can be found at Protein of the Month: Carbonic Anhydrase [].; PDB: 3FE4_A 2W2J_A 3B1B_B 2HFW_A 1Z93_A 1Z97_A 3UYQ_A 3UYN_A 1JD0_B 1JCZ_B ....
Probab=100.00 E-value=3.4e-67 Score=472.22 Aligned_cols=225 Identities=36% Similarity=0.646 Sum_probs=183.9
Q ss_pred cccCCCCCCCCCCccccCcCcccCCCCCCCCCceeeCCceeeecCCCCceecccC-CccEEeecCceeEEEecCCCceEE
Q 038655 35 FNYEKGGEHGPDRWGEIHSEWSACKNGTMQSPIDLLNERVEVVSHLGRLKRSYKP-SNATLRNRGHDIMLQWKGGAGTIL 113 (275)
Q Consensus 35 w~Y~~~~~~gP~~W~~l~~~~~~C~~G~~QSPInI~~~~~~~~~~l~~l~~~y~~-~~~~l~N~G~tv~v~~~~~~~~~~ 113 (275)
|+|+ +.+||++|+.+++ .|. |++||||||.+..+...+.+.+|.+.|.. ...++.|+||++++.+++......
T Consensus 1 W~Y~--~~~gp~~W~~~~~---~~~-G~~QSPInI~~~~~~~~~~l~~l~~~~~~~~~~~~~N~G~tv~v~~~~~~~~~~ 74 (256)
T PF00194_consen 1 WGYS--GNNGPENWPKLYP---CCG-GKRQSPININTSEAVYDPSLPPLKFSYYESSAGTLKNNGHTVQVNFDDTNNKPT 74 (256)
T ss_dssp CSSS--TTTSGGGHHHTSG---GGG-SSS-S-BEE-GGGSEEETTSEEEEEESTTSGEEEEEE-SSSEEEEECTSSSSSE
T ss_pred CcCC--CCCChhhhhhhCc---ccC-CCccCCEeeCcCccccccCCCCcEEeeccccceEEEecCceEEEEeCCCcccce
Confidence 9996 5689999998754 576 99999999999988877888889987744 345999999999999986433334
Q ss_pred EcC----eEEEeeeeeecC------CCCCccccccccceeeeeeec------------CCCceEEEEEEeeeCCCCchhH
Q 038655 114 ING----TKYVLQQCHWHS------PSEHTIDGKRFALEAHMVHES------------HDGKVAVVGIVYKIGRPDSFLA 171 (275)
Q Consensus 114 i~G----~~Y~l~q~HFH~------gSEHtidG~~~~~E~HiVh~~------------~~~~laVlav~~~~g~~n~~l~ 171 (275)
+.| .+|+|.|||||| ||||+|||++|||||||||++ .++++||||||+++++.|+.++
T Consensus 75 i~g~~l~~~Y~l~q~HfHwg~~~~~gSEH~idG~~y~~E~H~Vh~~~~~y~~~~~a~~~~~~laVl~v~~~~~~~n~~l~ 154 (256)
T PF00194_consen 75 ISGGPLPGEYRLEQFHFHWGSDNSSGSEHTIDGKRYPMEMHFVHRNSKKYSSFEEASKEPDGLAVLGVFFEIGESNPFLQ 154 (256)
T ss_dssp EEETTESSEEEEEEEEEEESSSTTSSSSSEETTBE-SEEEEEEEEETTTGSSHHHHTTSTTSEEEEEEEEEESS--GHHH
T ss_pred ecCCCccceEEEEEEEEecccCCCCccccchhhhhcccceeeeeeccccccchhhhhhccccceEEEEEeeccccccccc
Confidence 433 679999999998 599999999999999999999 5689999999999999999999
Q ss_pred HHHHHhhcccCCCCceeeecccCCCCccCCCCceEEEeeeccCCCCccceEEEEeceecccCHHHHHHHHHhccCC----
Q 038655 172 SISDHLRNISGSNERDATVGVIDPRAIKIGSSKYYRYIGSLTVPPCTENVTWTIVRKVRSVTREQVRVLRVAVHDE---- 247 (275)
Q Consensus 172 ~i~~~l~~i~~~~~~~~~~~~~~l~~L~~~~~~yy~Y~GSLTTPPC~E~V~WiV~~~pi~IS~~Ql~~fr~~~~~~---- 247 (275)
.|++.|+.+.. .++...+..|++++|+|....||+|.||||||||+|+|+|+||++|+.||.+||++||+++...
T Consensus 155 ~i~~~l~~i~~-~~~~~~~~~~~l~~llp~~~~yy~Y~GSLTtPpCtE~V~W~V~~~pi~is~~Ql~~f~~~~~~~~~~~ 233 (256)
T PF00194_consen 155 PILDALPNIPY-PGSSTPIQSFSLSDLLPSTRSYYRYNGSLTTPPCTEGVTWIVFKEPIPISQDQLNKFRKLLGNNNGEE 233 (256)
T ss_dssp HHHHHGGGGTS-TTEEEEEESBBGGGGSCSSSSEEEEEEE-SSTTSSSEEEEEEESSEEEEEHHHHHHHHTSBSSCTTSS
T ss_pred hhhhhhhhccc-cccccccccccccccCCCCCCEEEEcccccCCCcceeEEEEEeeeEEEEeHHHHHHHHHHhhcccCCc
Confidence 99999999876 5667777889999999999999999999999999999999999999999999999999987532
Q ss_pred ---CCCCCCCCCCCCCceEEEe
Q 038655 248 ---SNTNARPLQPINMRSVKLY 266 (275)
Q Consensus 248 ---~~~N~Rp~Qpln~R~V~~~ 266 (275)
+.+|+||+||||||.|+.+
T Consensus 234 ~~~~~~N~Rp~QpLn~R~V~~s 255 (256)
T PF00194_consen 234 FAPLVNNFRPVQPLNGRKVYAS 255 (256)
T ss_dssp ECBSSS-S---B--TTS-EEES
T ss_pred cccCCCCcCCCCCCCCcEEEeC
Confidence 4689999999999999976
No 7
>cd03126 alpha_CA_XII_XIV Carbonic anhydrase alpha, isozymes XII and XIV. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidine residues. This sub-family comprises the membrane proteins CA XII and XIV.
Probab=100.00 E-value=1.6e-66 Score=465.83 Aligned_cols=215 Identities=36% Similarity=0.563 Sum_probs=188.0
Q ss_pred CCCCccccCcCcccCCCCCCCCCceeeCCceeeecCCCCcee-cccC---CccEEeecCceeEEEecCCCceEEEcC--e
Q 038655 44 GPDRWGEIHSEWSACKNGTMQSPIDLLNERVEVVSHLGRLKR-SYKP---SNATLRNRGHDIMLQWKGGAGTILING--T 117 (275)
Q Consensus 44 gP~~W~~l~~~~~~C~~G~~QSPInI~~~~~~~~~~l~~l~~-~y~~---~~~~l~N~G~tv~v~~~~~~~~~~i~G--~ 117 (275)
||++|+.. |..|+ |++||||||.+..+..++.+.+|.+ +|.. ..++|.|+||+|++.+.+ .+.++| .
T Consensus 1 gp~~W~~~---~~~C~-G~~QSPInI~~~~~~~~~~l~~l~~~~y~~~~~~~~~l~N~Ghtv~v~~~~---~~~~~~l~~ 73 (249)
T cd03126 1 GENSWPKK---YPFCG-GVAQSPIDIHTDILQYDSSLPPLEFHGYNVSGTEQFTLTNNGHTVQLSLPP---TMHIGGLPF 73 (249)
T ss_pred CCCccccc---CCCCC-CCccCCEeEecCceeECCCCCccEEeccccCCCCceEEEECCEeEEEEEcC---CceecCCCc
Confidence 68999875 45798 9999999999988777788899998 6753 357999999999999864 345666 7
Q ss_pred EEEeeeeeecC-------CCCCccccccccceeeeeeecCC------------CceEEEEEEeeeCCCCchhHHHHHHhh
Q 038655 118 KYVLQQCHWHS-------PSEHTIDGKRFALEAHMVHESHD------------GKVAVVGIVYKIGRPDSFLASISDHLR 178 (275)
Q Consensus 118 ~Y~l~q~HFH~-------gSEHtidG~~~~~E~HiVh~~~~------------~~laVlav~~~~g~~n~~l~~i~~~l~ 178 (275)
+|+|.|||||| ||||+|||++|||||||||+|.+ +++|||||||++|+.|+.++.|++.|.
T Consensus 74 ~Y~l~qfHfHwG~~~~~~gSEH~idG~~y~~E~HlVH~n~~~y~~~~~A~~~~~glaVl~v~~~~g~~n~~~~~i~~~l~ 153 (249)
T cd03126 74 KYTASQLHLHWGQRGSPEGSEHTISGKHFAAELHIVHYNSDKYPDISTAMNKSQGLAVLGILIEVGPFNPSYEKIFSHLH 153 (249)
T ss_pred cEEEEEEEEEeCCCCCCCCceeeecCcccCceEEEEEecCccCCCHHHHhhcCCCeEEEEEEEEecCCChhHHHHHHHhh
Confidence 99999999998 58999999999999999999975 899999999999999999999999999
Q ss_pred cccCCCCceeeecccCCCCccCCC-CceEEEeeeccCCCCccceEEEEeceecccCHHHHHHHHHhccC-------CCCC
Q 038655 179 NISGSNERDATVGVIDPRAIKIGS-SKYYRYIGSLTVPPCTENVTWTIVRKVRSVTREQVRVLRVAVHD-------ESNT 250 (275)
Q Consensus 179 ~i~~~~~~~~~~~~~~l~~L~~~~-~~yy~Y~GSLTTPPC~E~V~WiV~~~pi~IS~~Ql~~fr~~~~~-------~~~~ 250 (275)
.+.. .+....+..|++..|+|.. .+||+|.||||||||+|+|+|+||++|++||.+||++||+++.. .+.+
T Consensus 154 ~i~~-~~~~~~~~~~~l~~llp~~~~~yy~Y~GSLTTPpC~E~V~W~V~~~pi~is~~Ql~~fr~~~~~~~~~~~~~~~~ 232 (249)
T cd03126 154 EVKY-KDQKVSVPGFNVQELLPKRLDEYYRYEGSLTTPPCYPSVLWTVFRNPVQISQEQLLALETALYSTEEDESREMVN 232 (249)
T ss_pred hccc-CCceeEcCCCCHHHhCccccCCeEEEeccCcCCCCcCceEEEEeCCceecCHHHHHHHHHHhhhcccCccCcccC
Confidence 8876 4555556678999998865 57999999999999999999999999999999999999997632 1469
Q ss_pred CCCCCCCCCCceEEEe
Q 038655 251 NARPLQPINMRSVKLY 266 (275)
Q Consensus 251 N~Rp~Qpln~R~V~~~ 266 (275)
|+||+||||||.|+++
T Consensus 233 N~Rp~QplngR~V~~~ 248 (249)
T cd03126 233 NYRQVQPFNERLVFAS 248 (249)
T ss_pred CCCCCCCCCCCEEEec
Confidence 9999999999999875
No 8
>cd03125 alpha_CA_VI Carbonic anhydrase alpha, isozyme VI. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidine residues. This sub-family comprises the secreted CA VI, which is found in saliva.
Probab=100.00 E-value=5.9e-66 Score=462.04 Aligned_cols=217 Identities=33% Similarity=0.570 Sum_probs=187.1
Q ss_pred CCCCccccCcCcccCCCCCCCCCceeeCCceeeecCCCCcee-ccc--CCccEEeecCceeEEEecCCCceEEE-cCeEE
Q 038655 44 GPDRWGEIHSEWSACKNGTMQSPIDLLNERVEVVSHLGRLKR-SYK--PSNATLRNRGHDIMLQWKGGAGTILI-NGTKY 119 (275)
Q Consensus 44 gP~~W~~l~~~~~~C~~G~~QSPInI~~~~~~~~~~l~~l~~-~y~--~~~~~l~N~G~tv~v~~~~~~~~~~i-~G~~Y 119 (275)
+|++|++. |..|+ |++||||||.+..+..++.+.+|.+ +|. +..++|.|+||||+|.+.++. .+.. .|.+|
T Consensus 1 ~~~~W~~~---~~~C~-G~~QSPInI~~~~~~~~~~l~~l~~~~y~~~~~~~~i~N~Ghtv~v~~~~~~-~~~~~~~~~Y 75 (249)
T cd03125 1 DESHWPEK---YPACG-GKRQSPIDIQRREVRFNPSLLQLELVGYEKEQGEFTMTNNGHTVQIDLPPTM-SITTGDGTVY 75 (249)
T ss_pred CCCccccc---CcCCC-CCCCCCEeEccCceeECCCCCceEeecccCCCccEEEEECCEEEEEEeCCCc-ccccCCCCCE
Confidence 36789874 56897 9999999999988777788889987 785 446899999999999986432 3322 46899
Q ss_pred EeeeeeecC--------CCCCccccccccceeeeeeecCC-----------CceEEEEEEeeeCC--CCchhHHHHHHhh
Q 038655 120 VLQQCHWHS--------PSEHTIDGKRFALEAHMVHESHD-----------GKVAVVGIVYKIGR--PDSFLASISDHLR 178 (275)
Q Consensus 120 ~l~q~HFH~--------gSEHtidG~~~~~E~HiVh~~~~-----------~~laVlav~~~~g~--~n~~l~~i~~~l~ 178 (275)
+|.|||||| ||||+|||++|||||||||++.+ +++|||||||++|+ .|+.++.|++.|+
T Consensus 76 ~l~q~HFHWG~~~~~~~gSEH~idG~~yp~E~HlVH~n~~y~~~~~a~~~~~glaVl~v~~~~~~~~~n~~~~~i~~~l~ 155 (249)
T cd03125 76 TAVQMHFHWGGRDSEISGSEHTIDGMRYVAELHIVHYNSKYKSYEEAKDKPDGLAVLAFLYKVGHYAENTYYSDFISKLA 155 (249)
T ss_pred EEEEEEEEecCCCCCCCCccceeccccCCceEEEEEecCCCCCHHHHhcCCCceEEEEEEEEeccCcCCccHHHHHHHHh
Confidence 999999997 79999999999999999999974 88999999999998 8999999999999
Q ss_pred cccCCCCceeeecccCCCCccCCC-CceEEEeeeccCCCCccceEEEEeceecccCHHHHHHHHHhccC----CCCCCCC
Q 038655 179 NISGSNERDATVGVIDPRAIKIGS-SKYYRYIGSLTVPPCTENVTWTIVRKVRSVTREQVRVLRVAVHD----ESNTNAR 253 (275)
Q Consensus 179 ~i~~~~~~~~~~~~~~l~~L~~~~-~~yy~Y~GSLTTPPC~E~V~WiV~~~pi~IS~~Ql~~fr~~~~~----~~~~N~R 253 (275)
.+.. +++...+..|++.+|+|.. .+||+|.||||||||+|+|+|+||++|++||.+||++||+++.. .+.+|+|
T Consensus 156 ~i~~-~~~~~~~~~~~~~~llp~~~~~yy~Y~GSLTTPpC~E~V~W~V~~~pi~Is~~Ql~~fr~~~~~~~~~~l~~N~R 234 (249)
T cd03125 156 KIKY-AGQTTTLTSLDVRDMLPENLHHYYTYQGSLTTPPCTENVLWFVFDDPVTLSKTQIVKLENTLMDHHNKTIRNDYR 234 (249)
T ss_pred hccc-CCceeecCCCCHHHhCCcCcCCeEEEeccCcCCCCCCceEEEEeCCceecCHHHHHHHHHHhcccCCCcccCCCC
Confidence 8875 4555566678888888866 67999999999999999999999999999999999999986532 2568999
Q ss_pred CCCCCCCceEEEe
Q 038655 254 PLQPINMRSVKLY 266 (275)
Q Consensus 254 p~Qpln~R~V~~~ 266 (275)
|+||||||.|+.+
T Consensus 235 p~Qpln~R~V~~~ 247 (249)
T cd03125 235 RTQPLNHRVVEAN 247 (249)
T ss_pred CCCCCCCCeEEee
Confidence 9999999999964
No 9
>cd03122 alpha_CARP_receptor_like Carbonic anhydrase alpha related protein, receptor_like subfamily. Carbonic anhydrase related proteins (CARPs) are sequence similar to carbonic anhydrases. Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism. CARPs have lost conserved histidines involved in zinc binding and consequently their catalytic activity. This sub-family of carbonic anhydrase-related domains found in tyrosine phosphatase receptors may play a role in cell adhesion.
Probab=100.00 E-value=7e-66 Score=462.65 Aligned_cols=217 Identities=30% Similarity=0.589 Sum_probs=186.9
Q ss_pred CCCCccccCcCcccCCCCCCCCCceeeCCceeeecCCCCceeccc---CCccEEeecCceeEEEecCCCceEEEcC----
Q 038655 44 GPDRWGEIHSEWSACKNGTMQSPIDLLNERVEVVSHLGRLKRSYK---PSNATLRNRGHDIMLQWKGGAGTILING---- 116 (275)
Q Consensus 44 gP~~W~~l~~~~~~C~~G~~QSPInI~~~~~~~~~~l~~l~~~y~---~~~~~l~N~G~tv~v~~~~~~~~~~i~G---- 116 (275)
||++|+.. |..|++|++||||||.+..+.....+++|.+.|. +..++|.|+||||++.+.++.+.+.++|
T Consensus 1 gp~~W~~~---~~~C~~G~~QSPIdI~~~~~~~~~~l~~l~~~~~~~~~~~~~l~N~Ghtv~v~~~~~~~~~~i~gg~l~ 77 (253)
T cd03122 1 NPKHWAKK---YPACGEGRQQSPIDIVEDTQVQRQGLQPLHFDGYEELTASTTLENTGKTVILRLEGNSSDPFVSGGPLL 77 (253)
T ss_pred Cccccccc---CCcCCCCCCCCCEeEeecceeccCCCCCeEEeccCCCCCceEEEECCeEEEEEecCCCCceEEeCCCCC
Confidence 78999974 5579999999999998864433333788888653 3678999999999999875445677777
Q ss_pred eEEEeeeeeecC------CCCCccccccccceeeeeeecCC-----------CceEEEEEEeeeC-CCCchhHHHHHHhh
Q 038655 117 TKYVLQQCHWHS------PSEHTIDGKRFALEAHMVHESHD-----------GKVAVVGIVYKIG-RPDSFLASISDHLR 178 (275)
Q Consensus 117 ~~Y~l~q~HFH~------gSEHtidG~~~~~E~HiVh~~~~-----------~~laVlav~~~~g-~~n~~l~~i~~~l~ 178 (275)
.+|+|.|||||| ||||+|||++|||||||||++.+ +++|||||||++| .+|+++++|++.+.
T Consensus 78 ~~Y~l~q~HFHwG~~~~~gSEH~idg~~yp~E~H~VH~n~~~~~~~~A~~~~~~laVv~vl~~~g~~~n~~l~~i~~~l~ 157 (253)
T cd03122 78 GRYKFSEITFHWGTCNSDGSEHSIDGHKFPLEMQILHRNTDFFDSFEAIKSPGGVLALAYLFELSHEDNPFLDPIIEGLR 157 (253)
T ss_pred CcEEEEEEEEEeCCCCCCCCceeecCccCcceEEEEEEcCCCCCHHHHhhcCCCeEEEEEEEEEecCCCHhHHHHHHHHH
Confidence 579999999997 68999999999999999999976 6999999999999 58999999999999
Q ss_pred cccCCCCceeeecccCCCCccCC-CCceEEEeeeccCCCCccceEEEEeceecccCHHHHHHHHHhccC---------CC
Q 038655 179 NISGSNERDATVGVIDPRAIKIG-SSKYYRYIGSLTVPPCTENVTWTIVRKVRSVTREQVRVLRVAVHD---------ES 248 (275)
Q Consensus 179 ~i~~~~~~~~~~~~~~l~~L~~~-~~~yy~Y~GSLTTPPC~E~V~WiV~~~pi~IS~~Ql~~fr~~~~~---------~~ 248 (275)
.+.. +++...+..|++..|+|. ..+||+|.||||||||+|+|+|+||++|++||.+||++||+++.. .+
T Consensus 158 ~i~~-~~~~~~~~~~~l~~llp~~~~~yy~Y~GSLTTPpC~E~V~W~V~~~pi~Is~~Ql~~fr~l~~~~~~~~~~~~~~ 236 (253)
T cd03122 158 NVSR-PGKEVELPPFPLSDLLPPFTDKYYSYEGSLTTPPCSETVEWIVFREPVPISSRQLEAFRELLTRRQDGVMSGDYL 236 (253)
T ss_pred hcCC-CCcEEEcCCCCHHHHhccccCCeEEEeeeccCCCCcCceEEEEeCceeecCHHHHHHHHHHhcccccccccCccc
Confidence 8876 455555667899998886 478999999999999999999999999999999999999998742 25
Q ss_pred CCCCCCCCCCCCceEE
Q 038655 249 NTNARPLQPINMRSVK 264 (275)
Q Consensus 249 ~~N~Rp~Qpln~R~V~ 264 (275)
.+|+||+||||||.|+
T Consensus 237 ~~N~Rp~Qpln~R~V~ 252 (253)
T cd03122 237 PNNGRPQQPLGSRTVF 252 (253)
T ss_pred cCCCcCCCCCCCCEec
Confidence 6899999999999996
No 10
>cd03150 alpha_CA_IX Carbonic anhydrase alpha, isozyme IX. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Alpha CAs are strictly monomeric enzymes. The zinc ion is complexed by three histidine residues. This sub-family comprises the membrane protein CA IX. CA IX is functionally implicated in tumor growth and survival. CA IX is mainly present in solid tumors and its expression in normal tissues is limited t
Probab=100.00 E-value=2.7e-65 Score=457.24 Aligned_cols=218 Identities=33% Similarity=0.553 Sum_probs=186.6
Q ss_pred CCCCccccCcCcccCCCCCCCCCceeeCCceeeecCCCCcee-ccc--C-CccEEeecCceeEEEecCCCceEEEc-CeE
Q 038655 44 GPDRWGEIHSEWSACKNGTMQSPIDLLNERVEVVSHLGRLKR-SYK--P-SNATLRNRGHDIMLQWKGGAGTILIN-GTK 118 (275)
Q Consensus 44 gP~~W~~l~~~~~~C~~G~~QSPInI~~~~~~~~~~l~~l~~-~y~--~-~~~~l~N~G~tv~v~~~~~~~~~~i~-G~~ 118 (275)
||++|+.+++ .|+ |++||||||.+..+..++.+++|.+ +|. + ..++|.|+||||+|.+.++. .+..+ |.+
T Consensus 1 ~~~~W~~~~~---~c~-G~~QSPIdI~~~~~~~~~~l~~l~~~~y~~~~~~~~~i~N~Ghtv~v~~~~~~-~~~~g~~~~ 75 (247)
T cd03150 1 GQPPWPSVSP---ACA-GRFQSPVDIRPHLVAFCPALRPLELLGFDLPPSPSLRLLNNGHTVQLSLPSGL-RMALGPGQE 75 (247)
T ss_pred CCCcccccCC---CCC-CCCcCCEeeccCceeECCCCCCceeeccccCCCCceEEEECCEEEEEEEeccc-ccccCCCCc
Confidence 5789998764 698 9999999999988777778888887 563 2 25799999999999986432 23222 589
Q ss_pred EEeeeeeecC------CCCCccccccccceeeeeeecC-----------CCceEEEEEEeeeCC-CCchhHHHHHHhhcc
Q 038655 119 YVLQQCHWHS------PSEHTIDGKRFALEAHMVHESH-----------DGKVAVVGIVYKIGR-PDSFLASISDHLRNI 180 (275)
Q Consensus 119 Y~l~q~HFH~------gSEHtidG~~~~~E~HiVh~~~-----------~~~laVlav~~~~g~-~n~~l~~i~~~l~~i 180 (275)
|+|.|||||| ||||+|||++|||||||||++. ++++|||||||++|. +|+.++.|++.|..+
T Consensus 76 Y~l~QfHfHwG~~~~~gSEH~idg~~yp~E~HlVH~n~~y~~~~~A~~~~~glaVl~v~~~~g~~~n~~l~~i~~~l~~i 155 (247)
T cd03150 76 YRALQLHLHWGAAGRPGSEHTVDGHRFPAEIHVVHLSTAFANLDEALGRPGGLAVLAAFLAEGLHENSAYEQLLSRLSEI 155 (247)
T ss_pred EEEEEEEEEeCCCCCCCcceeeCCcccchhhheeeecccCCCHHHHhcCCCCcEEEEEEEEecCCCCHHHHHHHHHHHhh
Confidence 9999999999 7999999999999999999986 589999999999995 899999999999988
Q ss_pred cCCCCceeeecccCCCCccCCC-CceEEEeeeccCCCCccceEEEEeceecccCHHHHHHHHHhccC----CCCCCCCCC
Q 038655 181 SGSNERDATVGVIDPRAIKIGS-SKYYRYIGSLTVPPCTENVTWTIVRKVRSVTREQVRVLRVAVHD----ESNTNARPL 255 (275)
Q Consensus 181 ~~~~~~~~~~~~~~l~~L~~~~-~~yy~Y~GSLTTPPC~E~V~WiV~~~pi~IS~~Ql~~fr~~~~~----~~~~N~Rp~ 255 (275)
.. +++...+..|++..|+|.. .+||+|.||||||||+|+|+|+||++|++||.+||++||+++.. .+.+|+||+
T Consensus 156 ~~-~~~~~~~~~~~l~~llp~~~~~yy~Y~GSLTTPPC~E~V~W~V~~~pi~is~~Ql~~fr~~l~~~~~~~l~~N~Rp~ 234 (247)
T cd03150 156 SE-EESETVVPGLDVSALLPSDLSRYFRYEGSLTTPPCAQGVIWTVFNQTVRLSAKQLHTLSDSLWGPHDSRLQLNFRAT 234 (247)
T ss_pred CC-CCceeecCCCCHHHHcCcccCCEEEEeeeccCCCCCCceEEEEeCceeecCHHHHHHHHHHHhccCCCcccCCCCCC
Confidence 76 4555556678888888866 57999999999999999999999999999999999999986632 256899999
Q ss_pred CCCCCceEEEeC
Q 038655 256 QPINMRSVKLYK 267 (275)
Q Consensus 256 Qpln~R~V~~~~ 267 (275)
||||||.|+++.
T Consensus 235 Qpln~R~V~~~~ 246 (247)
T cd03150 235 QPLNGRKIEASF 246 (247)
T ss_pred CCCCCCeEEeeC
Confidence 999999999753
No 11
>cd03123 alpha_CA_VI_IX_XII_XIV Carbonic anhydrase alpha, isozymes VI, IX, XII and XIV. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Alpha CAs are mostly monomeric enzymes. The zinc ion is complexed by three histidine residues. This sub-family comprises the secreted CA VI, which is found in saliva, for example, and the membrane proteins CA IX, XII, and XIV.
Probab=100.00 E-value=3e-65 Score=457.33 Aligned_cols=217 Identities=37% Similarity=0.584 Sum_probs=185.8
Q ss_pred CCCCccccCcCcccCCCCCCCCCceeeCCceeeecCCCCcee-cccC--C-ccEEeecCceeEEEecCCCceEEEc-CeE
Q 038655 44 GPDRWGEIHSEWSACKNGTMQSPIDLLNERVEVVSHLGRLKR-SYKP--S-NATLRNRGHDIMLQWKGGAGTILIN-GTK 118 (275)
Q Consensus 44 gP~~W~~l~~~~~~C~~G~~QSPInI~~~~~~~~~~l~~l~~-~y~~--~-~~~l~N~G~tv~v~~~~~~~~~~i~-G~~ 118 (275)
||++|++++ ..|+ |++||||||.+..+..++.+.+|.+ +|.. . .++|.|+||||++.+.++. .+..+ +.+
T Consensus 1 ~p~~W~~~~---~~C~-G~~QSPInI~~~~~~~~~~l~~l~~~~y~~~~~~~~~i~N~Ghtv~v~~~~~~-~~~gg~~~~ 75 (248)
T cd03123 1 GEDHWPKKY---PACG-GKRQSPIDIQTDIVQFDPSLPPLELVGYDLPGTEEFTLTNNGHTVQLSLPPTM-HIRGGPGTE 75 (248)
T ss_pred CCCcccccC---cCCC-CCCCCCEeEeccceeecCCCCcceecccccCCCCceEEEECCeeEEEEeCCCc-cccCCCCCC
Confidence 588999764 4797 9999999999988777778888987 6743 2 6799999999999987431 22211 268
Q ss_pred EEeeeeeecC-------CCCCccccccccceeeeeeecC------------CCceEEEEEEeeeC-CCCchhHHHHHHhh
Q 038655 119 YVLQQCHWHS-------PSEHTIDGKRFALEAHMVHESH------------DGKVAVVGIVYKIG-RPDSFLASISDHLR 178 (275)
Q Consensus 119 Y~l~q~HFH~-------gSEHtidG~~~~~E~HiVh~~~------------~~~laVlav~~~~g-~~n~~l~~i~~~l~ 178 (275)
|+|.|||||| ||||+|||++|||||||||++. ++++|||||||++| ..|+.++.|++.|.
T Consensus 76 Y~l~qfHfHwG~~~~~~gSEH~idG~~yp~E~HlVh~n~~~y~~~~~A~~~~~~laVl~v~~~~~~~~n~~~~~i~~~l~ 155 (248)
T cd03123 76 YTAAQLHLHWGGRGSLSGSEHTIDGIRFAAELHIVHYNSDKYSSFDEAADKPDGLAVLAILIEVGYPENTYYEKIISHLH 155 (248)
T ss_pred EEEEEEEEeeCCCCCCCCccceecCccCcceeEEEEEcccccCCHHHHhcCCCCeEEEEEEEEecCCCCccHHHHHHHHH
Confidence 9999999997 7999999999999999999998 48999999999999 68999999999999
Q ss_pred cccCCCCceeeecccCCCCccCCC-CceEEEeeeccCCCCccceEEEEeceecccCHHHHHHHHHhccC----CCCCCCC
Q 038655 179 NISGSNERDATVGVIDPRAIKIGS-SKYYRYIGSLTVPPCTENVTWTIVRKVRSVTREQVRVLRVAVHD----ESNTNAR 253 (275)
Q Consensus 179 ~i~~~~~~~~~~~~~~l~~L~~~~-~~yy~Y~GSLTTPPC~E~V~WiV~~~pi~IS~~Ql~~fr~~~~~----~~~~N~R 253 (275)
.+.. +++...+..|++..|+|.. .+||+|.||||||||+|+|+|+||++|+.||.+||++||+++.. .+.+|+|
T Consensus 156 ~i~~-~~~~~~~~~~~l~~llp~~~~~yy~Y~GSLTTPPC~E~V~W~V~~~pi~iS~~Ql~~fr~~l~~~~~~~~~~N~R 234 (248)
T cd03123 156 EIKY-KGQETTVPGFNVRELLPEDLSHYYRYEGSLTTPPCYESVLWTVFRDPVTLSKEQLETLENTLMDTHNKTLQNNYR 234 (248)
T ss_pred hhCc-CCcEEecCCCCHHHhcCCCcCCeEEEeccCcCCCCcCcEEEEEeCCceecCHHHHHHHHHHhhccCCCcccCCCC
Confidence 8876 4555556678999998875 57999999999999999999999999999999999999986532 2579999
Q ss_pred CCCCCCCceEEEe
Q 038655 254 PLQPINMRSVKLY 266 (275)
Q Consensus 254 p~Qpln~R~V~~~ 266 (275)
|+||||||.|+++
T Consensus 235 p~Qpln~R~V~~~ 247 (248)
T cd03123 235 ATQPLNGRVVEAS 247 (248)
T ss_pred CCCCCCCCEEEec
Confidence 9999999999875
No 12
>cd03149 alpha_CA_VII Carbonic anhydrase alpha, CA isozyme VII_like subgroup. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidines. This vertebrate subgroup comprises isozyme VII. CA VII is the most active cytosolic enzyme after CA II, and may be highly expressed in the brain. Human CA VII may be a target of antiepileptic sulfonamides/sulfamates.
Probab=100.00 E-value=2.8e-64 Score=448.03 Aligned_cols=205 Identities=32% Similarity=0.540 Sum_probs=180.2
Q ss_pred CCCCCCceeeCCceeeecCCCCceecccC-CccEEeecCceeEEEecCCCceEEEcC----eEEEeeeeeecC------C
Q 038655 61 GTMQSPIDLLNERVEVVSHLGRLKRSYKP-SNATLRNRGHDIMLQWKGGAGTILING----TKYVLQQCHWHS------P 129 (275)
Q Consensus 61 G~~QSPInI~~~~~~~~~~l~~l~~~y~~-~~~~l~N~G~tv~v~~~~~~~~~~i~G----~~Y~l~q~HFH~------g 129 (275)
|++||||||.+..+..++.+.+|.++|.. ..+++.|+||||++.+.++.+.+.+.| .+|+|.|||||| |
T Consensus 1 G~~QSPInI~~~~~~~~~~l~~l~~~y~~~~~~~~~N~Ghtv~v~~~~~~~~~~~~gg~l~~~Y~l~q~HfHwG~~~~~g 80 (236)
T cd03149 1 GNRQSPIDIVSSEAVYDPKLKPLSLSYDPCTSLSISNNGHSVMVEFDDSDDKTVITGGPLENPYRLKQFHFHWGAKHGSG 80 (236)
T ss_pred CCCCCCeeEccCceEECCCCCceEeecCCCcceEEEECCEEEEEEecCCCCceEEecCCCCCcEEEEEEEEecCCCCCCC
Confidence 78999999999888777888899998854 467999999999999875334455554 589999999997 7
Q ss_pred CCCccccccccceeeeeeecCC------------CceEEEEEEeeeCCCCchhHHHHHHhhcccCCCCceeeecccCCCC
Q 038655 130 SEHTIDGKRFALEAHMVHESHD------------GKVAVVGIVYKIGRPDSFLASISDHLRNISGSNERDATVGVIDPRA 197 (275)
Q Consensus 130 SEHtidG~~~~~E~HiVh~~~~------------~~laVlav~~~~g~~n~~l~~i~~~l~~i~~~~~~~~~~~~~~l~~ 197 (275)
|||+|||++|||||||||+|.+ +++|||||||++|+.|+.++.|++.|+.+.. .+....+..|++..
T Consensus 81 SEH~idg~~yp~E~HlVH~n~~~y~~~~~A~~~~~glaVlgv~~~~g~~n~~l~~i~~~l~~i~~-~~~~~~~~~~~~~~ 159 (236)
T cd03149 81 SEHTVDGKTFPSELHLVHWNAKKYKSFGEAAAAPDGLAVLGVFLETGDEHPGLNRLTDALYMVRF-KGTKAQFLDFNPKC 159 (236)
T ss_pred CceeecCeeccceeeeeEecccccCCHHHHhhccCCcEEEEEEEEecCCCccHHHHHHHhhhccc-CCcceeeccCCHHH
Confidence 9999999999999999999864 8999999999999999999999999998875 34455566788999
Q ss_pred ccCCCCceEEEeeeccCCCCccceEEEEeceecccCHHHHHHHHHhccC-------CCCCCCCCCCCCCCceEEEe
Q 038655 198 IKIGSSKYYRYIGSLTVPPCTENVTWTIVRKVRSVTREQVRVLRVAVHD-------ESNTNARPLQPINMRSVKLY 266 (275)
Q Consensus 198 L~~~~~~yy~Y~GSLTTPPC~E~V~WiV~~~pi~IS~~Ql~~fr~~~~~-------~~~~N~Rp~Qpln~R~V~~~ 266 (275)
|+|+..+||+|.||||||||+|+|+|+||++|++||.+||++||+++.. .+.+|+||+||||||.|+.+
T Consensus 160 llp~~~~yy~Y~GSLTTPpC~E~V~W~V~~~pi~is~~Ql~~fr~l~~~~~~~~~~~l~~N~Rp~Q~ln~R~v~~~ 235 (236)
T cd03149 160 LLPKSLDYWTYPGSLTTPPLNESVTWIVLKEPIPVSEKQMGKFRELLFTSEEDQRNHMVNNFRPPQPLKGRTVRAS 235 (236)
T ss_pred HCCCCCCeEEecccCcCCCCCCceEEEEeCceeeCCHHHHHHHHHhhhhccCcccccccCCCcCCCCCCCCEEEec
Confidence 9998889999999999999999999999999999999999999998742 24689999999999999865
No 13
>cd03118 alpha_CA_V Carbonic anhydrase alpha, CA isozyme V_like subgroup. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidines. This vertebrate subgroup comprises isozyme V. CA V is the mitochondrial isozyme, which may play a role in gluconeogenesis and ureagenesis and possibly also in lipogenesis.
Probab=100.00 E-value=3.3e-64 Score=447.60 Aligned_cols=205 Identities=32% Similarity=0.519 Sum_probs=180.1
Q ss_pred CCCCCCceeeCCceeeecCCCCceecccCC-ccEEeecCceeEEEecCCCc-eEEEcC---eEEEeeeeeecC------C
Q 038655 61 GTMQSPIDLLNERVEVVSHLGRLKRSYKPS-NATLRNRGHDIMLQWKGGAG-TILING---TKYVLQQCHWHS------P 129 (275)
Q Consensus 61 G~~QSPInI~~~~~~~~~~l~~l~~~y~~~-~~~l~N~G~tv~v~~~~~~~-~~~i~G---~~Y~l~q~HFH~------g 129 (275)
|++||||||.+..+..++.+.+|.++|... .++|.|+||||++.+.++.+ .+..+| .+|+|.|||||| |
T Consensus 1 G~~QSPIdI~~~~~~~~~~l~~l~~~y~~~~~~~l~N~Ghtv~v~~~~~~~~~~~~gg~l~~~Y~l~q~HfHwG~~~~~g 80 (236)
T cd03118 1 GTRQSPINIQWRDSVYDPQLAPLRVSYDPATCLYIWNNGYSFQVEFDDSTDKSGISGGPLENHYRLKQFHFHWGANNEWG 80 (236)
T ss_pred CCcCCCeeEecCceeECCCCCceEEecCCCCceEEEECCEEEEEEecCCCCceEEecCCCCCcEEEEEEEEEECCCCCCC
Confidence 789999999988877778889999988643 56999999999999875332 344455 599999999999 8
Q ss_pred CCCccccccccceeeeeeecC------------CCceEEEEEEeeeCCCCchhHHHHHHhhcccCCCCceeeecccCCCC
Q 038655 130 SEHTIDGKRFALEAHMVHESH------------DGKVAVVGIVYKIGRPDSFLASISDHLRNISGSNERDATVGVIDPRA 197 (275)
Q Consensus 130 SEHtidG~~~~~E~HiVh~~~------------~~~laVlav~~~~g~~n~~l~~i~~~l~~i~~~~~~~~~~~~~~l~~ 197 (275)
|||+|||++|||||||||++. ++++|||||||++|..|+.++.|++.++.+.. +++...+..|++..
T Consensus 81 SEH~idg~~~p~E~HlVH~n~~~y~~~~~A~~~~~~laVvgv~~~~g~~n~~l~~i~~~l~~i~~-~~~~~~~~~~~~~~ 159 (236)
T cd03118 81 SEHTVDGHTYPAELHLVHWNSVKYENFEEAVMEENGLAVIGVFLKLGAHHEGLQKLVDALPEVRH-KDTVVEFNPFDPSC 159 (236)
T ss_pred CceEECCEeccceeeEEEEcccccCCHHHHhcCCCCeEEEEEEEEecCcCccHHHHHHHHHhcCc-CCceeeecCCCHHH
Confidence 999999999999999999987 48999999999999999999999999999875 45555566789999
Q ss_pred ccCCCCceEEEeeeccCCCCccceEEEEeceecccCHHHHHHHHHhccC-------CCCCCCCCCCCCCCceEEEe
Q 038655 198 IKIGSSKYYRYIGSLTVPPCTENVTWTIVRKVRSVTREQVRVLRVAVHD-------ESNTNARPLQPINMRSVKLY 266 (275)
Q Consensus 198 L~~~~~~yy~Y~GSLTTPPC~E~V~WiV~~~pi~IS~~Ql~~fr~~~~~-------~~~~N~Rp~Qpln~R~V~~~ 266 (275)
|+|+..+||+|.||||||||+|+|+|+||++|++||.+||++||+++.. .+.+|+||+||||||.|+++
T Consensus 160 llp~~~~yy~Y~GSLTTPPC~E~V~W~V~~~pi~is~~Ql~~fr~l~~~~~~~~~~~l~~N~Rp~Qpln~R~V~~~ 235 (236)
T cd03118 160 LLPACRDYWTYPGSLTTPPLTESVTWIIQKQPIEVSPSQLSVFRTLLFTSRGEEEKVMVNNFRPLQPLMNRKVRSS 235 (236)
T ss_pred HcccCCCEEEecCcccCCCCcCceEEEEeCccccCCHHHHHHHHHHhhhccCCccccccCCCCCCCCCCCCEEEec
Confidence 9998889999999999999999999999999999999999999998742 14689999999999999875
No 14
>cd03120 alpha_CARP_VIII Carbonic anhydrase alpha related protein, group VIII. Carbonic anhydrase related proteins (CARPs) are sequence similar to carbonic anhydrases. Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism. CARPs have lost conserved histidines involved in zinc binding and consequently their catalytic activity. CARP VIII may play roles in various biological processes of the central nervous system, and could be involved in protein-protein interactions. CARP VIII has been shown to bind inositol 1,4,5-triphosphate (IP3) receptor type I (IP3RI), reducing the affinity of the receptor for IP3. IP3RI is an intracellular IP3-gated Ca2+ channel located on intracellular Ca2+ stores. IP3RI converts IP3 signaling into Ca2+ signaling thereby participating in a variety of cell functions.
Probab=100.00 E-value=7.4e-64 Score=450.27 Aligned_cols=214 Identities=28% Similarity=0.512 Sum_probs=183.5
Q ss_pred CCccccCcCcccCCCCCCCCCceeeCCceeeecCCC--CceecccCC-ccEEeecCceeEEEecCCCceEEEc-----Ce
Q 038655 46 DRWGEIHSEWSACKNGTMQSPIDLLNERVEVVSHLG--RLKRSYKPS-NATLRNRGHDIMLQWKGGAGTILIN-----GT 117 (275)
Q Consensus 46 ~~W~~l~~~~~~C~~G~~QSPInI~~~~~~~~~~l~--~l~~~y~~~-~~~l~N~G~tv~v~~~~~~~~~~i~-----G~ 117 (275)
++|+.+++ .|+ |++||||||.+..+..++.+. +|.++|.+. .++|.|+|||++|.+.++ ....+ |.
T Consensus 2 ~~W~~~~~---~c~-G~~QSPInI~~~~~~~~~~~~~~~l~~~y~~~~~~~l~N~Ghtv~v~~~~~--~~~~gg~l~~~~ 75 (256)
T cd03120 2 VEWGLLFP---EAN-GEYQSPINLNSREARYDPSLLEVRLSPNYVVCRDCEVINDGHTIQIILKSK--SVLSGGPLPQGH 75 (256)
T ss_pred CcccccCC---CCC-CCcCCCccCccCceEECCCCCcccceeccCCCCceEEEECCeEEEEEeCCC--ceeecCCCCCCc
Confidence 57998765 597 999999999998877777776 467777543 579999999999998742 22232 46
Q ss_pred EEEeeeeeecC------CCCCccccccccceeeeeeecCC------------CceEEEEEEeeeCCCCchhHHHHHHhhc
Q 038655 118 KYVLQQCHWHS------PSEHTIDGKRFALEAHMVHESHD------------GKVAVVGIVYKIGRPDSFLASISDHLRN 179 (275)
Q Consensus 118 ~Y~l~q~HFH~------gSEHtidG~~~~~E~HiVh~~~~------------~~laVlav~~~~g~~n~~l~~i~~~l~~ 179 (275)
+|+|.|||||| ||||+|||++|||||||||++.+ +++|||||||++|+.|+.++.|++.|+.
T Consensus 76 ~Y~l~q~HFHwG~~~~~gSEH~idG~~yp~E~HlVH~n~~~y~~~~~A~~~~~glaVlgv~~~~g~~n~~l~~i~~~l~~ 155 (256)
T cd03120 76 EFELAEVRFHWGRENQRGSEHTVNFKAFPMELHLIHWNSTLYSSLEEAMGKPHGIAIIALFVQIGKEHVGLKAVTEILQD 155 (256)
T ss_pred eEEEEEEEEEeCCCCCCCCceeecCccccceEEEEEecCcccCCHHHHhcCCCceEEEEEEEeecCCCHhHHHHHHHhHh
Confidence 89999999998 59999999999999999999974 6999999999999999999999999999
Q ss_pred ccCCCCceeeecccCCCCccCC--CCceEEEeeeccCCCCccceEEEEeceecccCHHHHHHHHHhccC-----------
Q 038655 180 ISGSNERDATVGVIDPRAIKIG--SSKYYRYIGSLTVPPCTENVTWTIVRKVRSVTREQVRVLRVAVHD----------- 246 (275)
Q Consensus 180 i~~~~~~~~~~~~~~l~~L~~~--~~~yy~Y~GSLTTPPC~E~V~WiV~~~pi~IS~~Ql~~fr~~~~~----------- 246 (275)
+.. .++...+..|++.+|+|. ..+||+|.||||||||+|+|+|+||++|+.||.+||++||+++..
T Consensus 156 i~~-~~~~~~~~~~~~~~llp~~~~~~yy~Y~GSLTTPPC~E~V~W~V~~~pi~IS~~Ql~~fr~l~~~~~~~~~~~~~~ 234 (256)
T cd03120 156 IQY-KGKSKTIPCFNPNTLLPDPLLRDYWVYEGSLTTPPCSEGVTWILFRYPLTISQSQIEEFRRLRTHVKGAELVEGCD 234 (256)
T ss_pred hcc-CCceeeecCCCHHHHCCCcCcCCeEEEeeecCCCCCCCCeEEEEeCCeeecCHHHHHHHHHHHhcccccccccccc
Confidence 876 455555667889999886 478999999999999999999999999999999999999998742
Q ss_pred -CCCCCCCCCCCCCCceEEEe
Q 038655 247 -ESNTNARPLQPINMRSVKLY 266 (275)
Q Consensus 247 -~~~~N~Rp~Qpln~R~V~~~ 266 (275)
.+.+|+||+||||||.|+.+
T Consensus 235 ~~l~~N~Rp~Qpln~R~v~~~ 255 (256)
T cd03120 235 GLLGDNFRPTQPLSDRVIRAA 255 (256)
T ss_pred ccccCCCCCCCCCCCCEEEec
Confidence 14689999999999999864
No 15
>KOG0382 consensus Carbonic anhydrase [General function prediction only]
Probab=100.00 E-value=9.7e-64 Score=448.15 Aligned_cols=229 Identities=39% Similarity=0.647 Sum_probs=196.7
Q ss_pred CCcccCCCCCCCCCCccccCcCcccCCCCCCCCCceeeCCceeeec-CCCCceeccc-CCccEEeecCceeEEEecCCCc
Q 038655 33 KEFNYEKGGEHGPDRWGEIHSEWSACKNGTMQSPIDLLNERVEVVS-HLGRLKRSYK-PSNATLRNRGHDIMLQWKGGAG 110 (275)
Q Consensus 33 ~~w~Y~~~~~~gP~~W~~l~~~~~~C~~G~~QSPInI~~~~~~~~~-~l~~l~~~y~-~~~~~l~N~G~tv~v~~~~~~~ 110 (275)
..|.|. ....||..|+.+++. |+ |++||||||....+.+++ .|.++.++|. .....+.|||++..|.+....+
T Consensus 3 ~~~~~~-~~~~gp~~W~~~~~~---~~-g~~QSPIdi~~~~~~~~~~~l~~~~~~~~~~~~~~~~nng~~~~v~~~~~~~ 77 (262)
T KOG0382|consen 3 EFWYYE-KGNKGPEHWGKLYPE---WK-GKRQSPIDIKRSQIVYDPDPLKPLRLSYEYKPCNAVLNNGHSRGVDIMLKGG 77 (262)
T ss_pred ceeEEe-ccccCCccccccCcC---cC-CCccCCccCccceeeecCccccceeeecccCcceEEEeCCceEEEEeecCCC
Confidence 346665 456699999997764 76 999999999999999888 6776777774 3456899999766666554333
Q ss_pred eEEEcC----e-EEEeeeeeecC------CCCCccccccccceeeeeeec-----------CCCceEEEEEEeeeCC-CC
Q 038655 111 TILING----T-KYVLQQCHWHS------PSEHTIDGKRFALEAHMVHES-----------HDGKVAVVGIVYKIGR-PD 167 (275)
Q Consensus 111 ~~~i~G----~-~Y~l~q~HFH~------gSEHtidG~~~~~E~HiVh~~-----------~~~~laVlav~~~~g~-~n 167 (275)
.+.+.| . .|++.|+|||| ||||+|||++|+||||+||+| .++|+||||||+++|+ .|
T Consensus 78 ~~~i~gg~l~~~~y~~~q~hfHWg~~~~~GSEHti~g~~f~~ElHlVH~n~~y~~~~eA~~~p~GlAVv~vf~k~g~~~n 157 (262)
T KOG0382|consen 78 KPEITGGPLPGIRYRLEQLHFHWGSPDSKGSEHTINGRRFPAELHLVHWNTKYENFKEALSKPDGLAVVGVFLKIGKEEN 157 (262)
T ss_pred CcceecCCCCCcceeEEEeEeecCCCCCCCCceecCCeecccEEEEEEeccccCCHHHHhcCCCcEEEEEEeecccCCCC
Confidence 444443 3 79999999999 599999999999999999999 5699999999999998 89
Q ss_pred chhHHHHHHhhcccCCCCceeeecccCCCCccCC-CCceEEEeeeccCCCCccceEEEEeceecccCHHHHHHHHHhccC
Q 038655 168 SFLASISDHLRNISGSNERDATVGVIDPRAIKIG-SSKYYRYIGSLTVPPCTENVTWTIVRKVRSVTREQVRVLRVAVHD 246 (275)
Q Consensus 168 ~~l~~i~~~l~~i~~~~~~~~~~~~~~l~~L~~~-~~~yy~Y~GSLTTPPC~E~V~WiV~~~pi~IS~~Ql~~fr~~~~~ 246 (275)
++|++|++.|..|.+ +++.+.+..|+|+.|+|. ..+||+|.||||||||+|+|+|+||++|++||.+||.+||.++.+
T Consensus 158 ~~l~~l~~~L~~I~~-k~~~~~l~~f~~~~llp~~~~~y~tY~GSLTTPPC~E~VtW~V~~~p~~is~~Ql~~~r~l~~~ 236 (262)
T KOG0382|consen 158 PFLSKLTDALKRIKY-KGQSTTLPGFDPSELLPKSTRDYYTYEGSLTTPPCSESVTWTVFREPVTVSREQLEKFRNLLFD 236 (262)
T ss_pred hhHHHHHHHhhcccc-CCcccccCCCCHHHhcCccCCceEEEEeeccCCCCCCCEEEEEcCceeecCHHHHHHHHHHhhC
Confidence 999999999999988 566777767999999887 899999999999999999999999999999999999999999854
Q ss_pred C----CCCCCCCCCCCCCceEEEeC
Q 038655 247 E----SNTNARPLQPINMRSVKLYK 267 (275)
Q Consensus 247 ~----~~~N~Rp~Qpln~R~V~~~~ 267 (275)
. +.+|+||+||||+|.|+++.
T Consensus 237 ~~~~~~~~N~Rp~Qpln~R~V~~~~ 261 (262)
T KOG0382|consen 237 EEGEPLVNNFRPLQPLNGRVVRASF 261 (262)
T ss_pred cccccccccCCcCcCCCCCeEeccc
Confidence 4 67999999999999999875
No 16
>PLN02179 carbonic anhydrase
Probab=100.00 E-value=4.6e-63 Score=438.60 Aligned_cols=206 Identities=47% Similarity=0.986 Sum_probs=179.5
Q ss_pred cccccccCCCCCcccCCCCCCCCCCccccCcCcccCCCCCCCCCceeeCCceeeecCCCCceecccCCccEEeecCceeE
Q 038655 23 SAMSKEVDEEKEFNYEKGGEHGPDRWGEIHSEWSACKNGTMQSPIDLLNERVEVVSHLGRLKRSYKPSNATLRNRGHDIM 102 (275)
Q Consensus 23 ~~~~~~~~~~~~w~Y~~~~~~gP~~W~~l~~~~~~C~~G~~QSPInI~~~~~~~~~~l~~l~~~y~~~~~~l~N~G~tv~ 102 (275)
++.+.+.+.+.+|+|+.++.+||++|++++++|..|++|++||||||.+..+.... ..+|.+.|.+...+|.|+||+++
T Consensus 25 ~~~~~~~~~~~~w~Y~~~~~~Gp~~W~~l~~~~~~C~~G~~QSPIdI~~~~~~~~~-~~~l~~~y~~~~~~i~N~Ghtv~ 103 (235)
T PLN02179 25 LVYAREIGNKPLFTYKQKTEKGPAEWGKLNPQWKVCSTGKYQSPIDLTDERVSLIH-DQALSRHYKPAPAVIQSRGHDVM 103 (235)
T ss_pred hhhcccccCCCCCCcCCCCCCCchhhhhcChhhhhccCCCcCCCEEeecccccccc-CCCcccccCCccEEEEECCeEEE
Confidence 34555668889999976678899999999999999999999999999886543211 23577788777889999999999
Q ss_pred EEecCCCceEEEcCeEEEeeeeeecCCCCCccccccccceeeeeeecCCCceEEEEEEeeeCCCCchhHHHHHHhhcccC
Q 038655 103 LQWKGGAGTILINGTKYVLQQCHWHSPSEHTIDGKRFALEAHMVHESHDGKVAVVGIVYKIGRPDSFLASISDHLRNISG 182 (275)
Q Consensus 103 v~~~~~~~~~~i~G~~Y~l~q~HFH~gSEHtidG~~~~~E~HiVh~~~~~~laVlav~~~~g~~n~~l~~i~~~l~~i~~ 182 (275)
+.+.++.+.+.++|.+|+|.||||||||||+|||++|||||||||+++++++|||||||++|++|+++++|++.++.+..
T Consensus 104 v~~~~~~~~~~i~g~~Y~L~QfHFH~gSEH~InG~~yp~E~H~VH~n~~g~laVlgvl~~~g~~n~~l~~il~~l~~~~~ 183 (235)
T PLN02179 104 VSWKGDAGKITIHQTDYKLVQCHWHSPSEHTINGTSYDLELHMVHTSASGKTAVVGVLYKLGEPDEFLTKLLNGIKGVGK 183 (235)
T ss_pred EEecCCCCeeEecCcEEEEEEEEecCCcceEecccccCeeEEEEEEcCCCCeEEEEEEEecCCCCHHHHHHHHhhhcccC
Confidence 99876566888999999999999999999999999999999999999999999999999999999999999999887643
Q ss_pred CCCceeeecccCCCCccCCCCceEEEeeeccCCCCccceEEEEeceeccc
Q 038655 183 SNERDATVGVIDPRAIKIGSSKYYRYIGSLTVPPCTENVTWTIVRKVRSV 232 (275)
Q Consensus 183 ~~~~~~~~~~~~l~~L~~~~~~yy~Y~GSLTTPPC~E~V~WiV~~~pi~I 232 (275)
+...+..+++.+|+|+..+||+|.||||||||+|+|+|+||++|+-|
T Consensus 184 ---~~~~~~~l~~~~llp~~~~yy~Y~GSLTTPPC~E~V~WiV~~~p~~~ 230 (235)
T PLN02179 184 ---KEINLGIVDPRDIRFETNNFYRYIGSLTIPPCTEGVIWTVVKRVVWF 230 (235)
T ss_pred ---cceeecccCHHHhCcCCCCEEEEecccCCCCCCCceEEEEecCcEEe
Confidence 23345668888888888899999999999999999999999999854
No 17
>cd03117 alpha_CA_IV_XV_like Carbonic anhydrase alpha, CA_IV, CA_XV, like isozymes. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidine residues. This subgroup, restricted to animals, contains isozyme IV and similar proteins such as mouse CA XV. Isozymes IV is attached to membranes via a glycosylphosphatidylinositol (GPI) tail. I
Probab=100.00 E-value=2.7e-62 Score=434.91 Aligned_cols=201 Identities=32% Similarity=0.534 Sum_probs=177.5
Q ss_pred CCCCCCceeeCCceeeecCCCCcee-ccc--CCccEEeecCceeEEEecCCCceEEEcC----eEEEeeeeeecC-----
Q 038655 61 GTMQSPIDLLNERVEVVSHLGRLKR-SYK--PSNATLRNRGHDIMLQWKGGAGTILING----TKYVLQQCHWHS----- 128 (275)
Q Consensus 61 G~~QSPInI~~~~~~~~~~l~~l~~-~y~--~~~~~l~N~G~tv~v~~~~~~~~~~i~G----~~Y~l~q~HFH~----- 128 (275)
|++||||||.+..+..+..+++|.+ +|. +..++|.|+||++++.+.+ .+.++| .+|+|.||||||
T Consensus 1 G~~QSPI~I~~~~~~~~~~l~~L~~~~y~~~~~~~~l~N~G~tv~v~~~~---~~~i~gg~L~~~Y~l~qfHfH~G~~~~ 77 (234)
T cd03117 1 GKRQSPINIVTKKVQYDENLTPFTFTGYDDTTTNWTITNNGHTVQVTLPD---GAKISGGGLPGTYKALQFHFHWGSNGS 77 (234)
T ss_pred CCcCCCEEEcccceEECCCCCcceeccccCCCCceEEEECCeEEEEEecC---CceEeCCCCCCcEEEEEEEEEeCCCCC
Confidence 7899999999988777778889998 685 3678999999999999864 456666 799999999999
Q ss_pred -CCCCccccccccceeeeeeecCC-----------CceEEEEEEeeeC-CCCchhHHHHHHhhcccCCCCceeeecccCC
Q 038655 129 -PSEHTIDGKRFALEAHMVHESHD-----------GKVAVVGIVYKIG-RPDSFLASISDHLRNISGSNERDATVGVIDP 195 (275)
Q Consensus 129 -gSEHtidG~~~~~E~HiVh~~~~-----------~~laVlav~~~~g-~~n~~l~~i~~~l~~i~~~~~~~~~~~~~~l 195 (275)
||||+|||++|||||||||++.+ +++|||||||+++ ..|+.++.|++.+..|.. .++...+..|++
T Consensus 78 ~gSEH~idg~~~~~E~HlVH~n~~~~~~~~A~~~~~~laVv~vl~~~~~~~n~~l~~i~~~l~~i~~-~~~~~~~~~~~~ 156 (234)
T cd03117 78 PGSEHTIDGERYPMELHIVHIKESYNSLLEALKDSDGLAVLGFFIEEGEEENTNFDPLISALSNIPQ-KGGSTNLTPFSL 156 (234)
T ss_pred CCCcceeCCeecchheeeeEecCCCCCHHHHhcCCCceEEEEEEEEecCCCCccHHHHHHHHHhccc-CCceeecCCCCH
Confidence 89999999999999999999974 7899999999999 589999999999999876 444555667888
Q ss_pred CCccCCC--CceEEEeeeccCCCCccceEEEEeceecccCHHHHHHHHHhccC------CCCCCCCCCCCCCCceEEE
Q 038655 196 RAIKIGS--SKYYRYIGSLTVPPCTENVTWTIVRKVRSVTREQVRVLRVAVHD------ESNTNARPLQPINMRSVKL 265 (275)
Q Consensus 196 ~~L~~~~--~~yy~Y~GSLTTPPC~E~V~WiV~~~pi~IS~~Ql~~fr~~~~~------~~~~N~Rp~Qpln~R~V~~ 265 (275)
.+|+|.. .+||+|.||||||||+|+|+|+||++|++||.+||++||+++.. .+.+|+||+||||||.|++
T Consensus 157 ~~llp~~~~~~yy~Y~GSLTTPPC~E~V~W~V~~~pi~Is~~Ql~~fr~l~~~~~~~~~~l~~N~Rp~Q~ln~R~v~~ 234 (234)
T cd03117 157 RSLLPSVLLTKYYRYNGSLTTPGCNEAVIWTVFEEPIPISRAQLDAFSTVLFFDTDNGQPMVNNFRPVQPLNGRVVYA 234 (234)
T ss_pred HHHCCCcccCCeEEEeccccCCCCcccEEEEEeCCceecCHHHHHHHHHHhcccccCCCcccCCCCCCCCCCCCEEeC
Confidence 8888864 58999999999999999999999999999999999999998753 2479999999999999974
No 18
>cd00326 alpha_CA Carbonic anhydrase alpha (vertebrate-like) group. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Most alpha CAs are monomeric enzymes. The zinc ion is complexed by three histidine residues and a fourth conserved histidine plays a potential role in proton transfer.
Probab=100.00 E-value=2.1e-61 Score=427.58 Aligned_cols=203 Identities=37% Similarity=0.650 Sum_probs=182.5
Q ss_pred CCCCCCceeeCCceeeecCCCCceecccC-CccEEeecCceeEEEecCCCceEEEcC--eEEEeeeeeecC------CCC
Q 038655 61 GTMQSPIDLLNERVEVVSHLGRLKRSYKP-SNATLRNRGHDIMLQWKGGAGTILING--TKYVLQQCHWHS------PSE 131 (275)
Q Consensus 61 G~~QSPInI~~~~~~~~~~l~~l~~~y~~-~~~~l~N~G~tv~v~~~~~~~~~~i~G--~~Y~l~q~HFH~------gSE 131 (275)
|++||||||.+..+.....+.+|.+.|.. ..+++.|+||++++.+.++.+.+.++| .+|+|.|||||| |||
T Consensus 1 G~~QSPI~I~~~~~~~~~~l~~l~~~~~~~~~~~i~N~G~tv~~~~~~~~~~i~~~~l~~~y~l~q~HfH~G~~~~~gSE 80 (227)
T cd00326 1 GKRQSPINIVTSAVVYDPSLPPLNFDYYPTTSLTLVNNGHTVQVNFDDDGGTLSGGGLPGRYKLVQFHFHWGSENSPGSE 80 (227)
T ss_pred CCCcCCeEECccceeECCCCCceeecccCCCceEEEECCeeEEEEecCCCceEeCCCCCCCEEEEEEEEecCCCCCCCCc
Confidence 78999999999877776778889987754 678999999999999986456788888 899999999999 999
Q ss_pred CccccccccceeeeeeecC----------CCceEEEEEEeeeC-CCCchhHHHHHHhhcccCCCCceeeecccCCCCccC
Q 038655 132 HTIDGKRFALEAHMVHESH----------DGKVAVVGIVYKIG-RPDSFLASISDHLRNISGSNERDATVGVIDPRAIKI 200 (275)
Q Consensus 132 HtidG~~~~~E~HiVh~~~----------~~~laVlav~~~~g-~~n~~l~~i~~~l~~i~~~~~~~~~~~~~~l~~L~~ 200 (275)
|+|||++|||||||||++. ++++|||||||+++ ..|++++.|++.+..+.. .+....+..+++..|+|
T Consensus 81 H~i~g~~y~~E~H~Vh~~~~~~~~~a~~~~~~laVv~v~~~~~~~~n~~l~~i~~~l~~~~~-~~~~~~~~~~~l~~llp 159 (227)
T cd00326 81 HTIDGKRYPLELHLVHYNSDYYSSEAAKKPGGLAVLGVFFEVGEKENPFLKKILDALPKIKY-KGKETTLPPFDLSDLLP 159 (227)
T ss_pred ceeCCEeccccceEEEECCCCCChhhhccCCCeEEEEEEEEecccCChhHHHHHHHHHhcCc-CCcEeecCCCCHHHHCC
Confidence 9999999999999999998 78999999999999 689999999999998875 45566677789999988
Q ss_pred CC-CceEEEeeeccCCCCccceEEEEeceecccCHHHHHHHHHhccC---CCCCCCCCCCCCCCceEE
Q 038655 201 GS-SKYYRYIGSLTVPPCTENVTWTIVRKVRSVTREQVRVLRVAVHD---ESNTNARPLQPINMRSVK 264 (275)
Q Consensus 201 ~~-~~yy~Y~GSLTTPPC~E~V~WiV~~~pi~IS~~Ql~~fr~~~~~---~~~~N~Rp~Qpln~R~V~ 264 (275)
.. .+||+|.||||||||+|+|+|+||++|++||.+||++||+++.. .+.+|+||+||||||.|+
T Consensus 160 ~~~~~y~~Y~GSLTTPpC~E~V~W~V~~~pi~Is~~Ql~~f~~l~~~~~~~~~~N~Rp~Q~ln~R~v~ 227 (227)
T cd00326 160 SSLRDYYTYEGSLTTPPCSEGVTWIVFKEPITISKEQLEAFRSLLDREGKPLVNNYRPVQPLNGRVVY 227 (227)
T ss_pred CCcCCEEEEeccCcCCCCccceEEEEeCCceecCHHHHHHHHHHHhcCCCcccCCCCCCCCCCCCeeC
Confidence 87 99999999999999999999999999999999999999998642 256899999999999984
No 19
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=43.87 E-value=89 Score=25.45 Aligned_cols=60 Identities=17% Similarity=0.423 Sum_probs=37.4
Q ss_pred EEeecCceeEEEecCCCceEEEcCeEEEeeeeeecCCCCCcccccccccee-eeeeecC--------CCceEEEEEEeee
Q 038655 93 TLRNRGHDIMLQWKGGAGTILINGTKYVLQQCHWHSPSEHTIDGKRFALEA-HMVHESH--------DGKVAVVGIVYKI 163 (275)
Q Consensus 93 ~l~N~G~tv~v~~~~~~~~~~i~G~~Y~l~q~HFH~gSEHtidG~~~~~E~-HiVh~~~--------~~~laVlav~~~~ 163 (275)
.+.|+-....+.+.+..|+++ .|..|.| ||-| | .+||||. |+++... .+|-..|.|+++-
T Consensus 38 ~v~dnlqqWii~v~Ga~GTLY-a~e~~qL-q~~F--~-------~~YP~esPqVmF~~~~P~HPHiYSNGHICL~iL~d~ 106 (161)
T KOG0427|consen 38 RVTDNLQQWIIEVTGAPGTLY-ANETYQL-QVEF--P-------EHYPMESPQVMFVGPAPLHPHIYSNGHICLDILYDS 106 (161)
T ss_pred ecccchheeEEEEecCCceee-cCcEEEE-EEec--C-------CCCCCCCCeEEEecCCCCCCceecCCeEEEEeeccc
Confidence 466777777777777666664 5677866 4544 2 3578874 4444332 3667778888764
No 20
>PF09211 DUF1958: Domain of unknown function (DUF1958); InterPro: IPR015294 Penicillin-binding proteins are beta-lactam antibiotic-sensitive bacterial enzymes required for the growth and maintenance of the peptidoglycan layer of the bacterial cell wall that protects the cell from osmotic stress. Penicillin-binding protein 4 (PBP4) functions as a transpeptidase, and belongs to MEROPS peptidase family S11 (clan SE). PBP4 acts co-operatively with PBP2 in staphylococcal cell wall biosynthesis and susceptibility to antimicrobial agents []. This entry represents the C-terminal domain PBP4.; PDB: 1TVF_A 3HUN_A 3HUM_B.
Probab=30.83 E-value=13 Score=26.61 Aligned_cols=16 Identities=44% Similarity=0.883 Sum_probs=12.1
Q ss_pred CCCccccccccceeee
Q 038655 130 SEHTIDGKRFALEAHM 145 (275)
Q Consensus 130 SEHtidG~~~~~E~Hi 145 (275)
-||+|||+.|-.+-=|
T Consensus 8 G~h~IdGk~y~v~kDl 23 (65)
T PF09211_consen 8 GEHTIDGKKYYVKKDL 23 (65)
T ss_dssp EEEEETTEEEEESS-E
T ss_pred ccEEECCEEEEecCCh
Confidence 3899999999876443
No 21
>PF13491 DUF4117: Domain of unknown function (DUF4117)
Probab=21.64 E-value=1.1e+02 Score=25.15 Aligned_cols=48 Identities=13% Similarity=0.099 Sum_probs=26.2
Q ss_pred hhhhhHHHHHHHHHHHHHHhccccccccCCCCCcccCCCCCCCCCCccc
Q 038655 2 EKLATELLFYRFFAVILLLSGSAMSKEVDEEKEFNYEKGGEHGPDRWGE 50 (275)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~Y~~~~~~gP~~W~~ 50 (275)
||+.+|....-+++.++.+.++ ..+=+..++.|++....+..++||..
T Consensus 1 ~r~~~~i~~~~l~~~~~fl~~a-l~sy~~~D~~~~~~~~~~~~~~N~~G 48 (171)
T PF13491_consen 1 ERRKREILGIALLLLALFLLLA-LISYSPSDPSWNSSGSTDAEVHNLMG 48 (171)
T ss_pred CcHHHHHHHHHHHHHHHHHHHH-HHHcCCCCCcccccccccCCCcCCCC
Confidence 6777887776666555555544 22222334448775333345667743
No 22
>PF06594 HCBP_related: Haemolysin-type calcium binding protein related domain; InterPro: IPR010566 This family consists of a number of bacteria specific domains, which are found in haemolysin-type calcium binding proteins. This family is found in conjunction with IPR001343 from INTERPRO and is often found in multiple copies.
Probab=21.55 E-value=1.5e+02 Score=18.67 Aligned_cols=13 Identities=15% Similarity=0.401 Sum_probs=10.5
Q ss_pred EEEeeeeeecCCC
Q 038655 118 KYVLQQCHWHSPS 130 (275)
Q Consensus 118 ~Y~l~q~HFH~gS 130 (275)
.|++.+|.|.-|+
T Consensus 24 ~~~Ie~i~FaDGt 36 (43)
T PF06594_consen 24 SYRIEQIEFADGT 36 (43)
T ss_pred CCcEeEEEEcCCC
Confidence 6888999998764
Done!