BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038657
(112 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CUQ|C Chain C, Integrated Structural And Functional Model Of The Human
Escrt-Ii Complex
pdb|3CUQ|D Chain D, Integrated Structural And Functional Model Of The Human
Escrt-Ii Complex
Length = 176
Score = 72.8 bits (177), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 60/109 (55%), Gaps = 2/109 (1%)
Query: 2 LNNEARETFLSALVSEGRAEWLDKGHRKCLILWHRIQDWADIILGFVKDNGLEDSVMTVE 61
L E+ + L L +G EWLDK LI+W R ++W +I +V +G +SV T+
Sbjct: 69 LPVESIQIVLEELRKKGNLEWLDKSKSSFLIMWRRPEEWGKLIYQWVSRSGQNNSVFTLY 128
Query: 62 EIRLGIESRGTELHGMDRTILMRALKLLEHKGKVAIFKGTSADDEGVKF 110
E+ G ++ E HG+D L+RAL+ L+ + K I T +D GVKF
Sbjct: 129 ELTNGEDTEDEEFHGLDEATLLRALQALQQEHKAEII--TVSDGRGVKF 175
>pdb|3HTU|A Chain A, Crystal Structure Of The Human Vps25-Vps20 Subcomplex
pdb|3HTU|C Chain C, Crystal Structure Of The Human Vps25-Vps20 Subcomplex
pdb|3HTU|E Chain E, Crystal Structure Of The Human Vps25-Vps20 Subcomplex
pdb|3HTU|G Chain G, Crystal Structure Of The Human Vps25-Vps20 Subcomplex
Length = 79
Score = 51.2 bits (121), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 36 RIQDWADIILGFVKDNGLEDSVMTVEEIRLGIESRGTELHGMDRTILMRALKLLEHKGKV 95
R ++W +I +V +G +SV T+ E+ G ++ E HG+D L+RAL+ L+ + K
Sbjct: 6 RPEEWGKLIYQWVSRSGQNNSVFTLYELTNGEDTEDEEFHGLDEATLLRALQALQQEHKA 65
Query: 96 AIFKGTSADDEGVKF 110
I T +D GVKF
Sbjct: 66 EII--TVSDGRGVKF 78
>pdb|1U5T|C Chain C, Structure Of The Escrt-Ii Endosomal Trafficking Complex
pdb|1U5T|D Chain D, Structure Of The Escrt-Ii Endosomal Trafficking Complex
pdb|1W7P|B Chain B, The Crystal Structure Of Endosomal Complex Escrt-Ii
(Vps22VPS25VPS36)
pdb|1W7P|C Chain C, The Crystal Structure Of Endosomal Complex Escrt-Ii
(Vps22VPS25VPS36)
pdb|1XB4|A Chain A, Crystal Structure Of Subunit Vps25 Of The Endosomal
Trafficking Complex Escrt-Ii
pdb|1XB4|B Chain B, Crystal Structure Of Subunit Vps25 Of The Endosomal
Trafficking Complex Escrt-Ii
pdb|1XB4|C Chain C, Crystal Structure Of Subunit Vps25 Of The Endosomal
Trafficking Complex Escrt-Ii
pdb|1XB4|D Chain D, Crystal Structure Of Subunit Vps25 Of The Endosomal
Trafficking Complex Escrt-Ii
Length = 202
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 12 SALVSEGRAEWLDKGHRKC--------LILWHRIQDWADIILGFVKDNGLEDSVMTVEEI 63
S + EG+ +D+ R+ ILW + WA +IL + +D+G + V+T+ E+
Sbjct: 95 SQMTKEGKCLPIDQSGRRSSNTTTTRYFILWKSLDSWASLILQWFEDSGKLNQVITLYEL 154
Query: 64 RLGIESRGTELHGMDRTILMRALKLLEHKGKVAIFK 99
G E+ E H M ++L LK L + + + K
Sbjct: 155 SEGDETVNWEFHRMPESLLYYCLKPLCDRNRATMLK 190
>pdb|1KCB|A Chain A, Crystal Structure Of A No-Forming Nitrite Reductase
Mutant: An Analog Of A Transition State In Enzymatic
Reaction
Length = 340
Score = 28.5 bits (62), Expect = 1.0, Method: Composition-based stats.
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 58 MTVEEIRLGIESRGTELHGM 77
MT+EE +L I+ GTE+H M
Sbjct: 43 MTIEEKKLVIDREGTEIHAM 62
>pdb|1NIB|A Chain A, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIB|B Chain B, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIB|C Chain C, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIA|A Chain A, The Structure Of Cu-nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIA|B Chain B, The Structure Of Cu-nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIA|C Chain C, The Structure Of Cu-nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|2BW4|A Chain A, Atomic Resolution Structure Of Resting State Of The
Achromobacter Cycloclastes Cu Nitrite Reductase
pdb|2BW5|A Chain A, Atomic Resolution Structure Of No-Bound Achromobacter
Cycloclastes Cu Nitrite Reductase
pdb|2BWD|A Chain A, Atomic Resolution Structure Of Achromobacter
Cycloclastes Cu Nitrite Reductase With Endogenously
Bound Nitrite And No
pdb|2BWI|A Chain A, Atomic Resolution Structure Of Nitrite -Soaked
Achromobacter Cycloclastes Cu Nitrite Reductase
pdb|1NIC|A Chain A, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NID|A Chain A, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIE|A Chain A, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|1NIF|A Chain A, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|2NRD|A Chain A, The Structure Of Cu-Nitrite Reductase From Achromobacter
Cycloclastes At Five Ph Values, With Nitrite Bound And
With Type Ii Cu Depleted
pdb|2Y1A|A Chain A, Crystal Structure Of Achromobacter Cycloclastes Cu
Nitrite Reductase With Bound No
Length = 340
Score = 28.5 bits (62), Expect = 1.0, Method: Composition-based stats.
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 58 MTVEEIRLGIESRGTELHGM 77
MT+EE +L I+ GTE+H M
Sbjct: 43 MTIEEKKLVIDREGTEIHAM 62
>pdb|1YQN|A Chain A, E. Coli Ispf Double Mutant
Length = 161
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 67 IESRGTELHGMDRTILMRALKLLEHKGKVAIF----KGTSADDEGVK 109
I+++G L +D TI+ +A K+L H ++ +F G DD VK
Sbjct: 86 IQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVK 132
>pdb|2GZL|A Chain A, Structure Of 2c-Methyl-D-Erythritol 2,4-Clycodiphosphate
Synthase Complexed With A Cdp Derived Fluorescent
Inhibitor
Length = 159
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 67 IESRGTELHGMDRTILMRALKLLEHKGKVAIF----KGTSADDEGVK 109
I+++G L +D TI+ +A K+L H ++ +F G DD VK
Sbjct: 86 IQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVK 132
>pdb|1JY8|A Chain A, 2c-methyl-d-erythritol 2,4-cyclodiphosphate Synthase
(ispf)
pdb|1KNK|A Chain A, Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase (Ispf) From E. Coli
Involved In Mevalonate-Independent Isoprenoid
Biosynthesis
pdb|1U3L|A Chain A, Ispf With Mg And Cdp
pdb|1U3P|A Chain A, Ispf Native
pdb|1U40|A Chain A, Ispf With 4-Diphosphocytidyl-2c-Methyl-D-Erythritol
pdb|1U43|A Chain A, Ispf With 4-Diphosphocytidyl-2c-Methyl-D-Erythritol
2-Phosphate
pdb|2AMT|A Chain A, Structure Of 2c-Methyl-D-Erythritol 2,4-Clycodiphosphate
Synthase Complexed With A Cdp Derived Fluorescent
Inhibitor
pdb|2AMT|B Chain B, Structure Of 2c-Methyl-D-Erythritol 2,4-Clycodiphosphate
Synthase Complexed With A Cdp Derived Fluorescent
Inhibitor
pdb|2AMT|C Chain C, Structure Of 2c-Methyl-D-Erythritol 2,4-Clycodiphosphate
Synthase Complexed With A Cdp Derived Fluorescent
Inhibitor
pdb|2AMT|D Chain D, Structure Of 2c-Methyl-D-Erythritol 2,4-Clycodiphosphate
Synthase Complexed With A Cdp Derived Fluorescent
Inhibitor
pdb|2AMT|E Chain E, Structure Of 2c-Methyl-D-Erythritol 2,4-Clycodiphosphate
Synthase Complexed With A Cdp Derived Fluorescent
Inhibitor
pdb|2AMT|F Chain F, Structure Of 2c-Methyl-D-Erythritol 2,4-Clycodiphosphate
Synthase Complexed With A Cdp Derived Fluorescent
Inhibitor
Length = 159
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 67 IESRGTELHGMDRTILMRALKLLEHKGKVAIF----KGTSADDEGVK 109
I+++G L +D TI+ +A K+L H ++ +F G DD VK
Sbjct: 84 IQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVK 130
>pdb|1H47|A Chain A, Structures Of Mecp Synthase In Complex With (I) Cmp And
(Ii) Cmp And Product
pdb|1H47|B Chain B, Structures Of Mecp Synthase In Complex With (I) Cmp And
(Ii) Cmp And Product
pdb|1H47|C Chain C, Structures Of Mecp Synthase In Complex With (I) Cmp And
(Ii) Cmp And Product
pdb|1H47|D Chain D, Structures Of Mecp Synthase In Complex With (I) Cmp And
(Ii) Cmp And Product
pdb|1H47|E Chain E, Structures Of Mecp Synthase In Complex With (I) Cmp And
(Ii) Cmp And Product
pdb|1H47|F Chain F, Structures Of Mecp Synthase In Complex With (I) Cmp And
(Ii) Cmp And Product
pdb|1H48|A Chain A, The Structure Of 2c-Methyl-D-Erythritol 2,4-
Cyclodiphosphate Synthase In Complex With Cmp And
Product
pdb|1H48|B Chain B, The Structure Of 2c-Methyl-D-Erythritol 2,4-
Cyclodiphosphate Synthase In Complex With Cmp And
Product
pdb|1H48|C Chain C, The Structure Of 2c-Methyl-D-Erythritol 2,4-
Cyclodiphosphate Synthase In Complex With Cmp And
Product
pdb|1H48|D Chain D, The Structure Of 2c-Methyl-D-Erythritol 2,4-
Cyclodiphosphate Synthase In Complex With Cmp And
Product
pdb|1H48|E Chain E, The Structure Of 2c-Methyl-D-Erythritol 2,4-
Cyclodiphosphate Synthase In Complex With Cmp And
Product
pdb|1H48|F Chain F, The Structure Of 2c-Methyl-D-Erythritol 2,4-
Cyclodiphosphate Synthase In Complex With Cmp And
Product
Length = 161
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 67 IESRGTELHGMDRTILMRALKLLEHKGKVAIF----KGTSADDEGVK 109
I+++G L +D TI+ +A K+L H ++ +F G DD VK
Sbjct: 86 IQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVK 132
>pdb|3ELC|A Chain A, Crystal Structure Of 2c-Methyl-D-Erythritol 2,4-
Clycodiphosphate Synthase Complexed With Ligand
pdb|3ELC|B Chain B, Crystal Structure Of 2c-Methyl-D-Erythritol 2,4-
Clycodiphosphate Synthase Complexed With Ligand
pdb|3ELC|C Chain C, Crystal Structure Of 2c-Methyl-D-Erythritol 2,4-
Clycodiphosphate Synthase Complexed With Ligand
pdb|3EOR|A Chain A, Crystal Structure Of 2c-Methyl-D-Erythritol 2,4-
Clycodiphosphate Synthase Complexed With Ligand
pdb|3ERN|A Chain A, Crystal Structure Of 2c-Methyl-D-Erythritol 2,4-
Clycodiphosphate Synthase Complexed With Aracmp
pdb|3ERN|B Chain B, Crystal Structure Of 2c-Methyl-D-Erythritol 2,4-
Clycodiphosphate Synthase Complexed With Aracmp
pdb|3ERN|C Chain C, Crystal Structure Of 2c-Methyl-D-Erythritol 2,4-
Clycodiphosphate Synthase Complexed With Aracmp
pdb|3ERN|D Chain D, Crystal Structure Of 2c-Methyl-D-Erythritol 2,4-
Clycodiphosphate Synthase Complexed With Aracmp
pdb|3ERN|E Chain E, Crystal Structure Of 2c-Methyl-D-Erythritol 2,4-
Clycodiphosphate Synthase Complexed With Aracmp
pdb|3ERN|F Chain F, Crystal Structure Of 2c-Methyl-D-Erythritol 2,4-
Clycodiphosphate Synthase Complexed With Aracmp
pdb|3ESJ|A Chain A, Crystal Structure Of 2c-Methyl-D-Erythritol 2,4-
Clycodiphosphate Synthase Complexed With Ligand
pdb|3FBA|A Chain A, Crystal Structure Of 2c-Methyl-D-Erythritol
2,4-Clycodiphosphate Synthase Complexed With Ligand
Length = 165
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 67 IESRGTELHGMDRTILMRALKLLEHKGKVAIF----KGTSADDEGVK 109
I+++G L +D TI+ +A K+L H ++ +F G DD VK
Sbjct: 90 IQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVK 136
>pdb|1OE2|A Chain A, Atomic Resolution Structure Of D92e Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 57 VMTVEEIRLGIESRGTELHGMDRTILMRALKLLEHKGKVA----IFKGTSADDEGVKF 110
MT+EE ++ I+ +GT L M M L+ H+G + T+A V+F
Sbjct: 36 TMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVEF 93
>pdb|1GS8|A Chain A, Crystal Structure Of Mutant D92n Alcaligenes Xylosoxidans
Nitrite Reductase
Length = 336
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 57 VMTVEEIRLGIESRGTELHGMDRTILMRALKLLEHKGKVA----IFKGTSADDEGVKF 110
MT+EE ++ I+ +GT L M M L+ H+G + T+A V F
Sbjct: 36 TMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPATNAMPHNVNF 93
>pdb|2WZS|A Chain A, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Mannoimidazole
pdb|2WZS|B Chain B, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Mannoimidazole
pdb|2WZS|C Chain C, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Mannoimidazole
pdb|2WZS|D Chain D, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Mannoimidazole
pdb|2WZS|E Chain E, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Mannoimidazole
pdb|2WZS|F Chain F, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Mannoimidazole
pdb|2WZS|G Chain G, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Mannoimidazole
pdb|2WZS|H Chain H, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Mannoimidazole
Length = 738
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 1 SLNNEARETFLSALVSEGR-AEWLDKGHRKCLI 32
S+N E +E ++ + G EW GHR C++
Sbjct: 344 SVNKEMQEGLINTYLESGFFPEWASPGHRGCMV 376
>pdb|2WVZ|A Chain A, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WVZ|B Chain B, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WVZ|C Chain C, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WVZ|D Chain D, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WW0|A Chain A, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WW0|B Chain B, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WW0|C Chain C, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WW0|D Chain D, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WW0|E Chain E, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WW0|F Chain F, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WW0|G Chain G, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WW0|H Chain H, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WW1|A Chain A, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Thiomannobioside
pdb|2WW1|B Chain B, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Thiomannobioside
pdb|2WW1|C Chain C, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Thiomannobioside
pdb|2WW1|D Chain D, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Thiomannobioside
pdb|2WW3|A Chain A, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Thiomannobioside
pdb|2WW3|B Chain B, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Thiomannobioside
pdb|2WW3|C Chain C, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Thiomannobioside
pdb|2WW3|D Chain D, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Thiomannobioside
pdb|2WW3|E Chain E, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Thiomannobioside
pdb|2WW3|F Chain F, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482 In Complex
With Thiomannobioside
Length = 744
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 1 SLNNEARETFLSALVSEGR-AEWLDKGHRKCLI 32
S+N E +E ++ + G EW GHR C++
Sbjct: 344 SVNKEMQEGLINTYLESGFFPEWASPGHRGCMV 376
>pdb|1GS7|A Chain A, Crystal Structure Of H254f Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 57 VMTVEEIRLGIESRGTELHGMDRTILMRALKLLEHKG 93
MT+EE ++ I+ +GT L M M L+ H+G
Sbjct: 36 TMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEG 72
>pdb|1WAE|A Chain A, Crystal Structure Of H129v Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 57 VMTVEEIRLGIESRGTELHGMDRTILMRALKLLEHKG 93
MT+EE ++ I+ +GT L M M L+ H+G
Sbjct: 36 TMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEG 72
>pdb|2XXF|A Chain A, Cu Metallated H254f Mutant Of Nitrite Reductase
pdb|2XXF|B Chain B, Cu Metallated H254f Mutant Of Nitrite Reductase
Length = 336
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 57 VMTVEEIRLGIESRGTELHGMDRTILMRALKLLEHKG 93
MT+EE ++ I+ +GT L M M L+ H+G
Sbjct: 36 TMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEG 72
>pdb|2XX0|A Chain A, Structure Of The N90s-H254f Mutant Of Nitrite Reductase
From Alcaligenes Xylosoxidans
pdb|2XX0|B Chain B, Structure Of The N90s-H254f Mutant Of Nitrite Reductase
From Alcaligenes Xylosoxidans
Length = 336
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 57 VMTVEEIRLGIESRGTELHGMDRTILMRALKLLEHKG 93
MT+EE ++ I+ +GT L M M L+ H+G
Sbjct: 36 TMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEG 72
>pdb|1GS6|X Chain X, Crystal Structure Of M144a Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 57 VMTVEEIRLGIESRGTELHGMDRTILMRALKLLEHKG 93
MT+EE ++ I+ +GT L M M L+ H+G
Sbjct: 36 TMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEG 72
>pdb|1WA1|X Chain X, Crystal Structure Of H313q Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
pdb|1WA2|X Chain X, Crystal Structure Of H313q Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase With Nitrite Bound
Length = 336
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 57 VMTVEEIRLGIESRGTELHGMDRTILMRALKLLEHKG 93
MT+EE ++ I+ +GT L M M L+ H+G
Sbjct: 36 TMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEG 72
>pdb|2BO0|A Chain A, Crystal Structure Of The C130a Mutant Of Nitrite
Reductase From Alcaligenes Xylosoxidans
Length = 336
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 57 VMTVEEIRLGIESRGTELHGMDRTILMRALKLLEHKG 93
MT+EE ++ I+ +GT L M M L+ H+G
Sbjct: 36 TMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEG 72
>pdb|1OE1|A Chain A, Atomic Resolution Structure Of The Wildtype Native
Nitrite Reductase From Alcaligenes Xylosoxidans
pdb|1OE3|A Chain A, Atomic Resolution Structure Of 'half Apo' Nir
Length = 336
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 57 VMTVEEIRLGIESRGTELHGMDRTILMRALKLLEHKG 93
MT+EE ++ I+ +GT L M M L+ H+G
Sbjct: 36 TMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEG 72
>pdb|2XXG|A Chain A, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans
pdb|2XXG|C Chain C, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans
Length = 336
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 57 VMTVEEIRLGIESRGTELHGMDRTILMRALKLLEHKG 93
MT+EE ++ I+ +GT L M M L+ H+G
Sbjct: 36 TMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEG 72
>pdb|2BP8|A Chain A, M168q Structure Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 57 VMTVEEIRLGIESRGTELHGMDRTILMRALKLLEHKG 93
MT+EE ++ I+ +GT L M M L+ H+G
Sbjct: 36 TMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEG 72
>pdb|2BP8|B Chain B, M168q Structure Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 57 VMTVEEIRLGIESRGTELHGMDRTILMRALKLLEHKG 93
MT+EE ++ I+ +GT L M M L+ H+G
Sbjct: 36 TMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEG 72
>pdb|1HAU|A Chain A, X-Ray Structure Of A Blue Copper Nitrite Reductase At
High Ph And In Copper Free Form At 1.9 A Resolution
pdb|1HAW|A Chain A, X-Ray Structure Of A Blue Copper Nitrite Reductase At
High Ph And In Copper Free Form At 1.9a Resolution
pdb|2VM3|A Chain A, Structure Of Alcaligenes Xylosoxidans In Space Group R3
- 1 Of 2
pdb|2VM4|A Chain A, Structure Of Alcaligenes Xylosoxidans Nitrite Reductase
In Space Group R3 - 2 Of 2
pdb|2VW4|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans - 2 Of 3
pdb|2VW4|B Chain B, Nitrite Reductase From Alcaligenes Xylosoxidans - 2 Of 3
pdb|2VW6|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans - 3 Of 3
pdb|2VW6|B Chain B, Nitrite Reductase From Alcaligenes Xylosoxidans - 3 Of 3
pdb|2VW7|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans - 1 Of 3
pdb|2VW7|B Chain B, Nitrite Reductase From Alcaligenes Xylosoxidans - 1 Of 3
pdb|2ZON|A Chain A, Crystal Structure Of Electron Transfer Complex Of
Nitrite Reductase With Cytochrome C
pdb|2ZON|B Chain B, Crystal Structure Of Electron Transfer Complex Of
Nitrite Reductase With Cytochrome C
pdb|2ZON|C Chain C, Crystal Structure Of Electron Transfer Complex Of
Nitrite Reductase With Cytochrome C
Length = 336
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 57 VMTVEEIRLGIESRGTELHGMDRTILMRALKLLEHKG 93
MT+EE ++ I+ +GT L M M L+ H+G
Sbjct: 36 TMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEG 72
>pdb|2JFC|A Chain A, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|B Chain B, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|C Chain C, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|D Chain D, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|E Chain E, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
pdb|2JFC|F Chain F, M144l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans In Space Group P212121
Length = 335
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 57 VMTVEEIRLGIESRGTELHGMDRTILMRALKLLEHKG 93
MT+EE ++ I+ +GT L M M L+ H+G
Sbjct: 35 TMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEG 71
>pdb|2VMJ|A Chain A, Type 1 Copper-Binding Loop Of Nitrite Reductase Mutant:
130- Capegmvpwhvvsgm-144 To 130-Ctphpfm-136
Length = 329
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 57 VMTVEEIRLGIESRGTELHGMDRTILMRALKLLEHKG 93
MT+EE ++ I+ +GT L M M L+ H+G
Sbjct: 37 TMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEG 73
>pdb|2XX1|A Chain A, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|B Chain B, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|C Chain C, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|D Chain D, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|E Chain E, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XX1|F Chain F, Structure Of The N90s Mutant Of Nitrite Reductase From
Alcaligenes Xylosoxidans Complexed With Nitrite
Length = 336
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 57 VMTVEEIRLGIESRGTELHGMDRTILMRALKLLEHKG 93
MT+EE ++ I+ +GT L M M L+ H+G
Sbjct: 36 TMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEG 72
>pdb|2XWZ|A Chain A, Structure Of The Recombinant Native Nitrite Reductase
From Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|B Chain B, Structure Of The Recombinant Native Nitrite Reductase
From Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|C Chain C, Structure Of The Recombinant Native Nitrite Reductase
From Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|D Chain D, Structure Of The Recombinant Native Nitrite Reductase
From Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|E Chain E, Structure Of The Recombinant Native Nitrite Reductase
From Alcaligenes Xylosoxidans Complexed With Nitrite
pdb|2XWZ|F Chain F, Structure Of The Recombinant Native Nitrite Reductase
From Alcaligenes Xylosoxidans Complexed With Nitrite
Length = 336
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 57 VMTVEEIRLGIESRGTELHGMDRTILMRALKLLEHKG 93
MT+EE ++ I+ +GT L M M L+ H+G
Sbjct: 36 TMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEG 72
>pdb|2BP0|A Chain A, M168l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 57 VMTVEEIRLGIESRGTELHGMDRTILMRALKLLEHKG 93
MT+EE ++ I+ +GT L M M L+ H+G
Sbjct: 36 TMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEG 72
>pdb|2BP0|B Chain B, M168l Mutant Of Nitrite Reductase From Alcaligenes
Xylosoxidans
Length = 336
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 57 VMTVEEIRLGIESRGTELHGMDRTILMRALKLLEHKG 93
MT+EE ++ I+ +GT L M M L+ H+G
Sbjct: 36 TMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEG 72
>pdb|1WA0|X Chain X, Crystal Structure Of W138h Mutant Of Alcaligenes
Xylosoxidans Nitrite Reductase
Length = 336
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 57 VMTVEEIRLGIESRGTELHGMDRTILMRALKLLEHKG 93
MT+EE ++ I+ +GT L M M L+ H+G
Sbjct: 36 TMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEG 72
>pdb|3GHZ|A Chain A, 2-C-Methyl-D-Erythritol 2,4-Cyclodiphosphate Synthase From
Salmonella Typhimurium
pdb|3GHZ|B Chain B, 2-C-Methyl-D-Erythritol 2,4-Cyclodiphosphate Synthase From
Salmonella Typhimurium
pdb|3GHZ|C Chain C, 2-C-Methyl-D-Erythritol 2,4-Cyclodiphosphate Synthase From
Salmonella Typhimurium
pdb|3T80|A Chain A, Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Salmonella
Typhimurium Bound To Cytidine
pdb|3T80|B Chain B, Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Salmonella
Typhimurium Bound To Cytidine
pdb|3T80|C Chain C, Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Salmonella
Typhimurium Bound To Cytidine
pdb|3T80|D Chain D, Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Salmonella
Typhimurium Bound To Cytidine
pdb|3T80|E Chain E, Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Salmonella
Typhimurium Bound To Cytidine
pdb|3T80|F Chain F, Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase From Salmonella
Typhimurium Bound To Cytidine
Length = 162
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 67 IESRGTELHGMDRTILMRALKLLEHKGKVAIF 98
I+++G L +D TI+ +A K+L H ++ +F
Sbjct: 87 IQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVF 118
>pdb|1LJ9|A Chain A, The Crystal Structure Of The Transcriptional Regulator
Slya
pdb|1LJ9|B Chain B, The Crystal Structure Of The Transcriptional Regulator
Slya
Length = 144
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 67 IESRGTELHGMDRTILMRALKLLEHKGKVAIFKGTSADDEGVK 109
I+ + EL +DRT RA+K LE +G I++ A ++ +K
Sbjct: 45 IQEKIAELIKVDRTTAARAIKRLEEQG--FIYRQEDASNKKIK 85
>pdb|2VN3|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans
Length = 337
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 58 MTVEEIRLGIESRGTELHGMDRTILMRALKLLEHKG 93
MT+EE ++ I+ +GT L M M L+ H+G
Sbjct: 38 MTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEG 73
>pdb|1BQ5|A Chain A, Nitrite Reductase From Alcaligenes Xylosoxidans Gifu
1051
Length = 342
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 58 MTVEEIRLGIESRGTELHGMDRTILMRALKLLEHKG 93
MT+EE ++ I+ +GT L M M L+ H+G
Sbjct: 43 MTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEG 78
>pdb|2AVF|A Chain A, Crystal Structure Of C-Terminal Desundecapeptide Nitrite
Reductase From Achromobacter Cycloclastes
pdb|2AVF|B Chain B, Crystal Structure Of C-Terminal Desundecapeptide Nitrite
Reductase From Achromobacter Cycloclastes
pdb|2AVF|C Chain C, Crystal Structure Of C-Terminal Desundecapeptide Nitrite
Reductase From Achromobacter Cycloclastes
pdb|2AVF|D Chain D, Crystal Structure Of C-Terminal Desundecapeptide Nitrite
Reductase From Achromobacter Cycloclastes
pdb|2AVF|E Chain E, Crystal Structure Of C-Terminal Desundecapeptide Nitrite
Reductase From Achromobacter Cycloclastes
pdb|2AVF|F Chain F, Crystal Structure Of C-Terminal Desundecapeptide Nitrite
Reductase From Achromobacter Cycloclastes
Length = 329
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 58 MTVEEIRLGIESRGTELHGM 77
MT+EE +L I+ GTE+H M
Sbjct: 43 MTIEEKKLVIDREGTEIHAM 62
>pdb|1VLU|A Chain A, Crystal Structure Of Gamma-Glutamyl Phosphate Reductase
(Yor323c) From Saccharomyces Cerevisiae At 2.40 A
Resolution
pdb|1VLU|B Chain B, Crystal Structure Of Gamma-Glutamyl Phosphate Reductase
(Yor323c) From Saccharomyces Cerevisiae At 2.40 A
Resolution
Length = 468
Score = 26.6 bits (57), Expect = 3.3, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 11 LSALVSEGRAEWLDKGHRKCLILWHRIQDWADIILGFVKDNGLEDSVM 58
L + +EGR++ L K H H I++ I L K+ GL DS++
Sbjct: 30 LKTISNEGRSDILYKIHDALKANAHAIEEANKIDLAVAKETGLADSLL 77
>pdb|1RZP|A Chain A, Crystal Structure Of C-Terminal Despentapeptide Nitrite
Reductase From Achromobacter Cycloclastes At Ph6.2
pdb|1RZP|B Chain B, Crystal Structure Of C-Terminal Despentapeptide Nitrite
Reductase From Achromobacter Cycloclastes At Ph6.2
pdb|1RZP|C Chain C, Crystal Structure Of C-Terminal Despentapeptide Nitrite
Reductase From Achromobacter Cycloclastes At Ph6.2
pdb|1RZQ|A Chain A, Crystal Structure Of C-Terminal Despentapeptide Nitrite
Reductase From Achromobacter Cycloclastes At Ph5.0
pdb|1RZQ|B Chain B, Crystal Structure Of C-Terminal Despentapeptide Nitrite
Reductase From Achromobacter Cycloclastes At Ph5.0
pdb|1RZQ|C Chain C, Crystal Structure Of C-Terminal Despentapeptide Nitrite
Reductase From Achromobacter Cycloclastes At Ph5.0
Length = 335
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 58 MTVEEIRLGIESRGTELHGM 77
MT+EE +L I+ GTE+H M
Sbjct: 43 MTIEEKKLVIDREGTEIHAM 62
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 32 ILWHRIQDWADIILGFVKDNGLEDSVMTVEE-IRLGIESRGTELHGMDRTILMRALKLLE 90
I + R+ D + + G+ D++M E R + RG +L G ++ + A +L+
Sbjct: 148 IRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILK 207
Query: 91 HKGKVAIFKGTSADD 105
G + + + TSA D
Sbjct: 208 APGIILLDEATSALD 222
>pdb|1KNJ|A Chain A, Co-Crystal Structure Of 2-C-Methyl-D-Erythritol
2,4-Cyclodiphosphate Synthase (Ispf) From E. Coli
Involved In Mevalonate-Independent Isoprenoid
Biosynthesis, Complexed With CmpMECDPMN2+
Length = 159
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 67 IESRGTELHGMDRTILMRALKLLEHKGKVAIF----KGTSADDEGVK 109
I+++G L +D TI+ +A K L H + +F G DD VK
Sbjct: 84 IQAKGYTLGNVDVTIIAQAPKXLPHIPQXRVFIAEDLGCHXDDVNVK 130
>pdb|1GX1|A Chain A, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase
pdb|1GX1|B Chain B, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase
pdb|1GX1|C Chain C, Structure Of 2c-Methyl-D-Erythritol-2,4-Cyclodiphosphate
Synthase
Length = 160
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 67 IESRGTELHGMDRTILMRALKLLEHKGKVAIF----KGTSADDEGVK 109
I+++G L +D TI+ +A K L H + +F G DD VK
Sbjct: 85 IQAKGYTLGNVDVTIIAQAPKXLPHIPQXRVFIAEDLGCHXDDVNVK 131
>pdb|2WVX|B Chain B, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482
Length = 744
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 1 SLNNEARETFLSALVSEGR-AEWLDKGHRKCLI 32
S+N E +E ++ + G EW GHR C +
Sbjct: 344 SVNKEXQEGLINTYLESGFFPEWASPGHRGCXV 376
>pdb|2WVX|A Chain A, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WVX|C Chain C, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482
pdb|2WVX|D Chain D, Structure Of The Family Gh92 Inverting Mannosidase Bt3990
From Bacteroides Thetaiotaomicron Vpi-5482
Length = 744
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 1 SLNNEARETFLSALVSEGR-AEWLDKGHRKCLI 32
S+N E +E ++ + G EW GHR C +
Sbjct: 344 SVNKEXQEGLINTYLESGFFPEWASPGHRGCXV 376
>pdb|2ZME|C Chain C, Integrated Structural And Functional Model Of The Human
Escrt-Ii Complex
pdb|2ZME|D Chain D, Integrated Structural And Functional Model Of The Human
Escrt-Ii Complex
Length = 102
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 2 LNNEARETFLSALVSEGRAEWLDKGHRKCLILW 34
L E+ + L L +G EWLDK LI+W
Sbjct: 69 LPVESIQIVLEELRKKGNLEWLDKSKSSFLIMW 101
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,305,941
Number of Sequences: 62578
Number of extensions: 119090
Number of successful extensions: 390
Number of sequences better than 100.0: 55
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 352
Number of HSP's gapped (non-prelim): 55
length of query: 112
length of database: 14,973,337
effective HSP length: 76
effective length of query: 36
effective length of database: 10,217,409
effective search space: 367826724
effective search space used: 367826724
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)