BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 038657
(112 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VZC9|VPS25_ARATH Vacuolar protein sorting-associated protein 25 OS=Arabidopsis
thaliana GN=VPS25 PE=1 SV=1
Length = 179
Score = 200 bits (509), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 97/112 (86%), Positives = 106/112 (94%)
Query: 1 SLNNEARETFLSALVSEGRAEWLDKGHRKCLILWHRIQDWADIILGFVKDNGLEDSVMTV 60
SL++EARETFLSA+V EGRAEWLDKGHRKCLILWHRIQDWADI+L FV+DNGLEDSVMTV
Sbjct: 68 SLSHEARETFLSAIVGEGRAEWLDKGHRKCLILWHRIQDWADIVLQFVRDNGLEDSVMTV 127
Query: 61 EEIRLGIESRGTELHGMDRTILMRALKLLEHKGKVAIFKGTSADDEGVKFSV 112
EEIR G ES GTEL G+DRTILMRALKLLE+KGK+A+FKGTSADDEGVKFSV
Sbjct: 128 EEIRSGTESLGTELQGIDRTILMRALKLLENKGKLALFKGTSADDEGVKFSV 179
>sp|Q6NWF4|VPS25_DANRE Vacuolar protein-sorting-associated protein 25 OS=Danio rerio
GN=vps25 PE=2 SV=2
Length = 174
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 64/109 (58%), Gaps = 2/109 (1%)
Query: 2 LNNEARETFLSALVSEGRAEWLDKGHRKCLILWHRIQDWADIILGFVKDNGLEDSVMTVE 61
L+ EA + L +G EWLDK +CLI+W R ++W +I +V NG+ +SV T+
Sbjct: 67 LSVEAIQVVFEELRKKGNLEWLDKNKSRCLIMWRRPEEWGKLIYQWVSKNGMVNSVFTLY 126
Query: 62 EIRLGIESRGTELHGMDRTILMRALKLLEHKGKVAIFKGTSADDEGVKF 110
E+ G ++ E HG++ +L+R+L+ L+ GK I T D +GVKF
Sbjct: 127 ELANGDDTEKEEFHGLEDWMLLRSLQALQTDGKAEII--TMDDGKGVKF 173
>sp|Q6AX45|VPS25_XENLA Vacuolar protein-sorting-associated protein 25 OS=Xenopus laevis
GN=vps25 PE=2 SV=1
Length = 174
Score = 76.3 bits (186), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 61/106 (57%), Gaps = 2/106 (1%)
Query: 5 EARETFLSALVSEGRAEWLDKGHRKCLILWHRIQDWADIILGFVKDNGLEDSVMTVEEIR 64
E+ + L L +G EW+DK + LI+W R +W +I +V NG+ +SV T+ E+
Sbjct: 70 ESVQVVLEELRKKGNLEWIDKNKSRFLIMWRRPDEWGKVIYQWVSKNGMTNSVFTLYELI 129
Query: 65 LGIESRGTELHGMDRTILMRALKLLEHKGKVAIFKGTSADDEGVKF 110
G ++ G E HG+D +L+R+L+ L+ + K I T + GVKF
Sbjct: 130 SGDDTEGEEFHGLDEAMLLRSLEALQQEHKAEII--TLNESRGVKF 173
>sp|Q5E9A6|VPS25_BOVIN Vacuolar protein-sorting-associated protein 25 OS=Bos taurus
GN=VPS25 PE=2 SV=1
Length = 176
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 60/109 (55%), Gaps = 2/109 (1%)
Query: 2 LNNEARETFLSALVSEGRAEWLDKGHRKCLILWHRIQDWADIILGFVKDNGLEDSVMTVE 61
L E+ + L L +G EWLDK LI+W R ++W +I +V +G +SV T+
Sbjct: 69 LPVESIQVVLEELRKKGNLEWLDKNKSSFLIMWRRPEEWGKLIYQWVSKSGQNNSVFTLY 128
Query: 62 EIRLGIESRGTELHGMDRTILMRALKLLEHKGKVAIFKGTSADDEGVKF 110
E+ G ++ E HG+D L+RAL+ L+ + K I T +D GVKF
Sbjct: 129 ELTNGEDTEDEEFHGLDEATLLRALQALQQEHKAEII--TVSDGRGVKF 175
>sp|Q9CQ80|VPS25_MOUSE Vacuolar protein-sorting-associated protein 25 OS=Mus musculus
GN=Vps25 PE=2 SV=1
Length = 176
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 60/109 (55%), Gaps = 2/109 (1%)
Query: 2 LNNEARETFLSALVSEGRAEWLDKGHRKCLILWHRIQDWADIILGFVKDNGLEDSVMTVE 61
L E+ + L L +G EWLDK LI+W R ++W +I +V +G +SV T+
Sbjct: 69 LPVESIQIVLEELRKKGNLEWLDKNKSSFLIMWRRPEEWGKLIYQWVSRSGQNNSVFTLY 128
Query: 62 EIRLGIESRGTELHGMDRTILMRALKLLEHKGKVAIFKGTSADDEGVKF 110
E+ G ++ E HG+D L+RAL+ L+ + K I T +D GVKF
Sbjct: 129 ELTSGEDTEDEEFHGLDEATLLRALQALQQEHKAEII--TVSDGRGVKF 175
>sp|P0C0A1|VPS25_RAT Vacuolar protein-sorting-associated protein 25 OS=Rattus norvegicus
GN=Vps25 PE=1 SV=1
Length = 176
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 60/109 (55%), Gaps = 2/109 (1%)
Query: 2 LNNEARETFLSALVSEGRAEWLDKGHRKCLILWHRIQDWADIILGFVKDNGLEDSVMTVE 61
L E+ + L L +G EWLDK LI+W R ++W +I +V +G +SV T+
Sbjct: 69 LPVESIQIVLEELRKKGNLEWLDKNKSSFLIMWRRPEEWGKLIYQWVSRSGQNNSVFTLY 128
Query: 62 EIRLGIESRGTELHGMDRTILMRALKLLEHKGKVAIFKGTSADDEGVKF 110
E+ G ++ E HG+D L+RAL+ L+ + K I T +D GVKF
Sbjct: 129 ELTSGEDTEEEEFHGLDEATLLRALQALQQEHKAEII--TVSDGRGVKF 175
>sp|Q9BRG1|VPS25_HUMAN Vacuolar protein-sorting-associated protein 25 OS=Homo sapiens
GN=VPS25 PE=1 SV=1
Length = 176
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 60/109 (55%), Gaps = 2/109 (1%)
Query: 2 LNNEARETFLSALVSEGRAEWLDKGHRKCLILWHRIQDWADIILGFVKDNGLEDSVMTVE 61
L E+ + L L +G EWLDK LI+W R ++W +I +V +G +SV T+
Sbjct: 69 LPVESIQIVLEELRKKGNLEWLDKSKSSFLIMWRRPEEWGKLIYQWVSRSGQNNSVFTLY 128
Query: 62 EIRLGIESRGTELHGMDRTILMRALKLLEHKGKVAIFKGTSADDEGVKF 110
E+ G ++ E HG+D L+RAL+ L+ + K I T +D GVKF
Sbjct: 129 ELTNGEDTEDEEFHGLDEATLLRALQALQQEHKAEII--TVSDGRGVKF 175
>sp|Q55GD9|VPS25_DICDI Vacuolar protein-sorting-associated protein 25 OS=Dictyostelium
discoideum GN=vps25 PE=1 SV=1
Length = 194
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 70/122 (57%), Gaps = 15/122 (12%)
Query: 2 LNNEARETFLSALVSEGRAEWLDKGHR-------------KCLILWHRIQDWADIILGFV 48
L+ EA ++ + ++ G AEW+DK + LI+W + +WA +I +V
Sbjct: 72 LSREALKSIIDDIIENGFAEWVDKEKEKEKEKDKDNNNNNRVLIMWRKPDEWASLIYKWV 131
Query: 49 KDNGLEDSVMTVEEIRLGIESRGTELHGMDRTILMRALKLLEHKGKVAIFKGTSADDEGV 108
D GL ++V+TV EI+ G +S+ E H ++ TILM++LK+LE + K F + ++ GV
Sbjct: 132 ADCGLLNTVLTVWEIQNGDDSKKQEFHQLNTTILMKSLKVLEKQSKCQTF--SQDENVGV 189
Query: 109 KF 110
KF
Sbjct: 190 KF 191
>sp|Q7JXV9|VPS25_DROME Vacuolar protein-sorting-associated protein 25 OS=Drosophila
melanogaster GN=Vps25 PE=2 SV=1
Length = 174
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 56/100 (56%), Gaps = 2/100 (2%)
Query: 11 LSALVSEGRAEWLDKGHRKCLILWHRIQDWADIILGFVKDNGLEDSVMTVEEIRLGIESR 70
L L G A LDK ++ + W ++++ +++ +V++ G +++ T+ EI G +
Sbjct: 76 LGELERSGHANPLDKRRQEWQVYWFTLEEYGNMVYDWVQETGQTNTICTLYEIASGENTS 135
Query: 71 GTELHGMDRTILMRALKLLEHKGKVAIFKGTSADDEGVKF 110
+ +G+D +L+ AL+LLE KG+ + + + GVKF
Sbjct: 136 HLDFYGVDEAVLLSALRLLEEKGRCELIEMDGS--HGVKF 173
>sp|O74967|VPS25_SCHPO Vacuolar protein-sorting-associated protein 25
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=vps25 PE=3 SV=1
Length = 175
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 52/98 (53%), Gaps = 6/98 (6%)
Query: 14 LVSEGRAEWLDKGHRK--CLILWHRIQDWADIILGFVKDNGLEDSVMTVEEIRLGIESRG 71
+V + AEW +K + K + W I +W ++IL ++ D G E S+ T E ++ +
Sbjct: 78 MVKQNLAEWTEKRNPKDVFWVYWRSISEWGNMILKWLSDMGREGSICTFYE----LQEQY 133
Query: 72 TELHGMDRTILMRALKLLEHKGKVAIFKGTSADDEGVK 109
E+ +D +L + L+LL KG + + KG+S G K
Sbjct: 134 KEVDCLDEVLLHKVLELLMKKGNIELMKGSSGKYSGFK 171
>sp|P47142|VPS25_YEAST Vacuolar protein-sorting-associated protein 25 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS25 PE=1
SV=1
Length = 202
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 12 SALVSEGRAEWLDKGHRKC--------LILWHRIQDWADIILGFVKDNGLEDSVMTVEEI 63
S + EG+ +D+ R+ ILW + WA +IL + +D+G + V+T+ E+
Sbjct: 95 SQMTKEGKCLPIDQSGRRSSNTTTTRYFILWKSLDSWASLILQWFEDSGKLNQVITLYEL 154
Query: 64 RLGIESRGTELHGMDRTILMRALKLLEHKGKVAIFK 99
G E+ E H M ++L LK L + + + K
Sbjct: 155 SEGDETVNWEFHRMPESLLYYCLKPLCDRNRATMLK 190
>sp|Q54CT1|MYBN_DICDI Myb-like protein N OS=Dictyostelium discoideum GN=mybN PE=3 SV=1
Length = 577
Score = 35.8 bits (81), Expect = 0.089, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 30/43 (69%), Gaps = 2/43 (4%)
Query: 41 ADIILGFVKDNGLEDSVMTVEEIRLGIESRGTE--LHGMDRTI 81
+++++ F+K+NG+EDS +T+++ RL I E L G D+TI
Sbjct: 360 SNVMINFLKENGVEDSEITIDQKRLSIILNDFENGLRGKDKTI 402
>sp|B6YS33|RSMH_AZOPC Ribosomal RNA small subunit methyltransferase H OS=Azobacteroides
pseudotrichonymphae genomovar. CFP2 GN=rsmH PE=3 SV=1
Length = 304
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 42/75 (56%), Gaps = 5/75 (6%)
Query: 37 IQDWADIILGFVKDNGLEDSVMTV-EEIRLGIESRGTELHGMDRTILMRALKLLEHKGKV 95
+QD+ DI+ FV+ +E + + + +R+ + EL + + +L++A +LL G++
Sbjct: 179 VQDFLDILKPFVRKGKVEKQLAQIFQALRIEVNK---ELDAL-KEMLIQAKQLLRSGGRI 234
Query: 96 AIFKGTSADDEGVKF 110
AI S +D VKF
Sbjct: 235 AIITYHSLEDRLVKF 249
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,056,847
Number of Sequences: 539616
Number of extensions: 1496314
Number of successful extensions: 3483
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 3465
Number of HSP's gapped (non-prelim): 20
length of query: 112
length of database: 191,569,459
effective HSP length: 80
effective length of query: 32
effective length of database: 148,400,179
effective search space: 4748805728
effective search space used: 4748805728
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)