Query 038657
Match_columns 112
No_of_seqs 102 out of 186
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 23:15:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/038657.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/038657hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cuq_C Vacuolar protein-sortin 100.0 9.8E-51 3.4E-55 303.7 10.9 109 1-111 68-176 (176)
2 1xb4_A VPS25, hypothetical 23. 100.0 1.9E-50 6.6E-55 307.5 11.7 110 1-112 84-201 (202)
3 3htu_A Vacuolar protein-sortin 100.0 4.6E-45 1.6E-49 242.7 7.6 78 32-111 2-79 (79)
4 2dk8_A DNA-directed RNA polyme 86.6 0.85 2.9E-05 29.6 3.9 56 37-102 12-67 (81)
5 3cuq_C Vacuolar protein-sortin 84.9 0.84 2.9E-05 33.4 3.7 55 37-98 30-90 (176)
6 1xb4_A VPS25, hypothetical 23. 75.3 8.3 0.00028 28.7 6.4 63 37-101 27-109 (202)
7 2v9v_A Selenocysteine-specific 67.9 17 0.00058 23.7 6.1 91 2-98 29-122 (135)
8 2dll_A Interferon regulatory f 67.6 13 0.00045 25.4 5.6 48 7-54 9-66 (121)
9 2irf_G IRF-2, interferon regul 67.6 17 0.00059 24.6 6.1 48 7-54 8-65 (113)
10 2yu3_A DNA-directed RNA polyme 66.5 9 0.00031 25.2 4.3 56 37-102 35-90 (95)
11 2jt1_A PEFI protein; solution 66.0 12 0.0004 23.4 4.7 48 42-100 7-59 (77)
12 1lva_A Selenocysteine-specific 64.8 34 0.0012 25.3 7.8 84 2-98 101-190 (258)
13 3zxw_B Ribulose bisphosphate c 63.2 7.1 0.00024 26.9 3.5 36 2-37 19-59 (118)
14 1rbl_M Ribulose 1,5 bisphospha 62.2 7.1 0.00024 26.5 3.3 35 2-36 20-59 (109)
15 2pjp_A Selenocysteine-specific 62.0 25 0.00087 22.9 6.0 49 2-53 32-80 (121)
16 1bwv_S Rubisco, protein (ribul 61.1 7.6 0.00026 27.5 3.4 34 2-35 14-52 (138)
17 1svd_M Ribulose bisphosphate c 60.2 7.6 0.00026 26.4 3.1 35 2-36 22-61 (110)
18 2htj_A P fimbrial regulatory p 58.6 17 0.00058 21.8 4.4 45 43-99 4-48 (81)
19 3cuq_B Vacuolar protein-sortin 58.4 26 0.00088 25.9 6.1 94 2-111 114-210 (218)
20 2k02_A Ferrous iron transport 57.6 12 0.0004 24.1 3.6 45 43-99 6-50 (87)
21 4f0h_B Ribulose bisphosphate c 57.1 11 0.00038 26.7 3.6 35 2-36 14-53 (138)
22 1bxn_I Rubisco, protein (ribul 56.8 9.3 0.00032 27.0 3.2 34 2-35 14-52 (139)
23 1gk8_I Ribulose bisphosphate c 55.3 8.9 0.0003 27.2 2.9 35 2-36 21-78 (140)
24 1wdd_S Ribulose bisphosphate c 54.6 14 0.0005 25.7 3.9 36 2-37 21-72 (128)
25 2ia0_A Putative HTH-type trans 53.9 51 0.0017 22.7 6.9 83 2-86 43-137 (171)
26 1yg2_A Gene activator APHA; vi 53.1 3.5 0.00012 28.9 0.5 43 57-99 15-57 (179)
27 1ucr_A Protein DSVD; dissimila 50.7 24 0.00082 22.7 4.1 30 2-31 34-63 (78)
28 2xvc_A ESCRT-III, SSO0910; cel 50.2 18 0.00062 22.1 3.3 45 42-97 13-57 (59)
29 2dk5_A DNA-directed RNA polyme 49.5 22 0.00075 22.7 3.9 54 36-101 19-72 (91)
30 2fu4_A Ferric uptake regulatio 49.3 19 0.00066 21.5 3.5 56 42-102 20-75 (83)
31 3tqn_A Transcriptional regulat 48.8 31 0.0011 22.2 4.7 52 39-98 13-66 (113)
32 3htu_A Vacuolar protein-sortin 48.6 16 0.00056 23.3 3.1 23 2-24 47-69 (79)
33 3qu3_A IRF-7, interferon regul 48.5 21 0.00072 25.1 3.9 47 8-54 16-71 (137)
34 1xma_A Predicted transcription 46.9 3.1 0.00011 28.8 -0.6 57 39-100 41-97 (145)
35 2y75_A HTH-type transcriptiona 45.8 23 0.00078 23.0 3.7 52 40-100 10-61 (129)
36 3f8b_A Transcriptional regulat 43.9 8.8 0.0003 25.2 1.3 43 58-100 26-68 (116)
37 3qu6_A IRF3 protein; helix-tur 43.9 20 0.00067 24.5 3.1 47 8-54 12-67 (116)
38 1lva_A Selenocysteine-specific 43.8 94 0.0032 22.8 8.1 89 2-98 29-122 (258)
39 2o03_A Probable zinc uptake re 42.9 22 0.00074 23.5 3.2 56 42-103 14-69 (131)
40 2obp_A Putative DNA-binding pr 41.9 40 0.0014 21.9 4.3 30 73-102 44-73 (96)
41 3mwm_A ZUR, putative metal upt 40.3 21 0.00071 24.0 2.8 55 42-102 17-71 (139)
42 2heo_A Z-DNA binding protein 1 38.4 25 0.00086 20.7 2.7 43 42-95 13-55 (67)
43 3lmm_A Uncharacterized protein 38.2 21 0.00071 30.0 3.0 85 2-98 456-563 (583)
44 3fyr_A Sporulation inhibitor S 37.4 17 0.00057 21.3 1.7 18 1-18 22-39 (48)
45 1xn7_A Hypothetical protein YH 36.4 32 0.0011 21.4 3.0 44 43-98 6-49 (78)
46 3lwf_A LIN1550 protein, putati 36.4 46 0.0016 23.1 4.2 39 56-102 43-81 (159)
47 2fe3_A Peroxide operon regulat 35.1 38 0.0013 22.7 3.5 56 41-102 24-79 (145)
48 3l7w_A Putative uncharacterize 34.8 32 0.0011 21.9 3.0 39 58-100 23-61 (108)
49 1oyi_A Double-stranded RNA-bin 34.2 33 0.0011 21.8 2.9 51 35-98 13-63 (82)
50 3neu_A LIN1836 protein; struct 34.1 36 0.0012 22.3 3.2 54 39-100 17-72 (125)
51 1u5t_B Defective in vacuolar p 34.0 69 0.0024 22.7 4.9 63 38-102 14-87 (169)
52 1ro7_A Alpha-2,3/8-sialyltrans 34.0 16 0.00056 27.6 1.6 29 72-102 185-213 (259)
53 3by6_A Predicted transcription 33.2 38 0.0013 22.3 3.2 52 40-99 16-69 (126)
54 1p6r_A Penicillinase repressor 33.1 75 0.0026 18.7 4.3 26 2-27 39-64 (82)
55 2ek5_A Predicted transcription 32.7 40 0.0014 22.4 3.2 27 73-99 36-62 (129)
56 3t8r_A Staphylococcus aureus C 32.3 44 0.0015 22.5 3.5 53 40-101 12-64 (143)
57 1bja_A Transcription regulator 32.2 31 0.0011 22.6 2.5 23 74-96 40-62 (95)
58 4esb_A Transcriptional regulat 32.1 26 0.00088 22.9 2.2 41 58-100 23-63 (115)
59 2fsw_A PG_0823 protein; alpha- 31.6 35 0.0012 21.4 2.7 52 38-101 24-75 (107)
60 1ylf_A RRF2 family protein; st 30.8 29 0.001 23.4 2.3 51 40-100 15-65 (149)
61 2zc2_A DNAD-like replication p 30.4 40 0.0014 20.3 2.7 21 75-95 33-53 (78)
62 3go5_A Multidomain protein wit 30.4 31 0.0011 26.4 2.6 56 35-98 220-278 (285)
63 4ham_A LMO2241 protein; struct 30.0 46 0.0016 21.9 3.2 55 38-100 17-73 (134)
64 1rii_A 2,3-bisphosphoglycerate 29.8 51 0.0018 24.2 3.7 47 51-98 205-252 (265)
65 2zfw_A PEX; five alpha-helices 29.8 6.7 0.00023 27.4 -1.2 43 57-100 57-99 (148)
66 2v7f_A RPS19, RPS19E SSU ribos 29.8 32 0.0011 24.0 2.4 91 4-98 10-114 (150)
67 1ldd_A APC2WHB, anaphase promo 29.7 84 0.0029 19.6 4.2 25 2-26 45-69 (74)
68 1sfx_A Conserved hypothetical 29.7 41 0.0014 20.1 2.7 48 42-101 23-70 (109)
69 2d1h_A ST1889, 109AA long hypo 29.7 41 0.0014 20.1 2.7 35 58-100 37-71 (109)
70 1xd7_A YWNA; structural genomi 29.4 32 0.0011 23.1 2.3 28 73-100 31-58 (145)
71 2k4b_A Transcriptional regulat 29.4 75 0.0026 20.3 4.1 31 2-34 65-95 (99)
72 2hzt_A Putative HTH-type trans 28.7 42 0.0014 21.1 2.7 50 39-100 14-63 (107)
73 2plx_B Peptide inhibitor; heli 27.2 38 0.0013 17.1 1.8 14 78-91 13-26 (26)
74 2xig_A Ferric uptake regulatio 27.1 41 0.0014 22.8 2.6 56 41-102 29-84 (150)
75 1r7j_A Conserved hypothetical 27.1 48 0.0016 20.9 2.7 26 73-98 28-53 (95)
76 1ub9_A Hypothetical protein PH 26.8 50 0.0017 19.6 2.7 49 40-100 17-65 (100)
77 1w7p_D VPS36P, YLR417W; ESCRT- 26.7 1.1E+02 0.0037 26.0 5.5 97 2-111 455-557 (566)
78 1on2_A Transcriptional regulat 26.1 48 0.0016 21.4 2.7 26 73-98 30-55 (142)
79 1okr_A MECI, methicillin resis 26.1 1.1E+02 0.0038 18.9 4.4 25 2-26 40-64 (123)
80 1fs1_A SKP2 F-BOX, cyclin A/CD 25.9 20 0.00068 19.8 0.6 19 71-89 6-24 (53)
81 2x4h_A Hypothetical protein SS 25.9 50 0.0017 21.1 2.7 25 73-97 39-63 (139)
82 1z7u_A Hypothetical protein EF 25.7 47 0.0016 21.0 2.5 52 38-101 21-72 (112)
83 3bxp_A Putative lipase/esteras 25.4 1.2E+02 0.0042 20.7 4.9 53 2-55 205-274 (277)
84 1qgp_A Protein (double strande 25.2 1.1E+02 0.0038 18.4 4.2 31 2-32 43-73 (77)
85 2e1n_A PEX, period extender; c 25.1 39 0.0013 23.0 2.2 43 57-100 47-89 (138)
86 4f21_A Carboxylesterase/phosph 25.1 1.4E+02 0.0047 21.3 5.3 47 36-92 197-243 (246)
87 3eyy_A Putative iron uptake re 24.8 41 0.0014 22.6 2.2 54 42-102 22-75 (145)
88 1y0u_A Arsenical resistance op 24.6 58 0.002 19.8 2.7 24 75-98 53-76 (96)
89 1ou8_A Stringent starvation pr 24.4 35 0.0012 23.2 1.7 16 42-57 14-29 (111)
90 1hw1_A FADR, fatty acid metabo 24.2 51 0.0017 23.3 2.7 28 73-100 39-66 (239)
91 3df8_A Possible HXLR family tr 24.0 57 0.002 20.8 2.7 23 74-96 52-74 (111)
92 3cuo_A Uncharacterized HTH-typ 23.8 1.2E+02 0.0041 17.9 5.3 45 2-49 50-94 (99)
93 2lnb_A Z-DNA-binding protein 1 23.5 78 0.0027 20.3 3.2 47 40-97 20-66 (80)
94 3c7j_A Transcriptional regulat 23.3 64 0.0022 23.3 3.2 27 73-99 57-83 (237)
95 1ku9_A Hypothetical protein MJ 23.1 61 0.0021 20.4 2.7 36 58-101 42-77 (152)
96 3sqg_B Methyl-coenzyme M reduc 22.8 16 0.00056 29.9 -0.2 19 42-60 245-263 (433)
97 1yfn_A Stringent starvation pr 22.5 40 0.0014 23.1 1.7 16 42-57 15-30 (118)
98 3bro_A Transcriptional regulat 22.4 1.3E+02 0.0045 18.6 4.3 29 73-101 58-86 (141)
99 3edp_A LIN2111 protein; APC883 22.4 76 0.0026 22.9 3.4 54 39-100 13-68 (236)
100 3iz6_S 40S ribosomal protein S 22.2 37 0.0013 24.1 1.6 94 4-98 15-119 (146)
101 2oqg_A Possible transcriptiona 22.2 66 0.0023 19.8 2.7 45 42-99 24-68 (114)
102 3f8m_A GNTR-family protein tra 22.2 80 0.0027 23.0 3.5 53 39-101 18-71 (248)
103 1q1h_A TFE, transcription fact 22.2 1.4E+02 0.0048 18.3 4.3 22 2-23 45-66 (110)
104 2f2e_A PA1607; transcription f 22.2 63 0.0022 21.6 2.7 51 38-101 23-73 (146)
105 1hbn_B Methyl-coenzyme M reduc 21.9 17 0.0006 29.8 -0.2 19 42-60 249-267 (442)
106 1e6y_B Methyl-coenzyme M reduc 21.9 17 0.00058 29.9 -0.3 19 42-60 246-264 (433)
107 2k53_A A3DK08 protein; NESG, C 21.7 58 0.002 20.0 2.3 18 73-90 46-63 (76)
108 3tgn_A ADC operon repressor AD 21.5 68 0.0023 20.3 2.7 50 36-100 37-86 (146)
109 3ic7_A Putative transcriptiona 21.4 72 0.0025 20.9 2.9 53 39-99 15-69 (126)
110 1yyv_A Putative transcriptiona 21.2 63 0.0021 21.4 2.5 51 38-100 34-84 (131)
111 3hhh_A Transcriptional regulat 21.2 73 0.0025 20.7 2.8 41 58-100 27-67 (116)
112 3lwf_A LIN1550 protein, putati 21.2 1.6E+02 0.0055 20.2 4.8 38 2-40 56-93 (159)
113 3bwg_A Uncharacterized HTH-typ 20.9 85 0.0029 22.6 3.4 53 39-99 9-63 (239)
114 3l9f_A Putative uncharacterize 20.7 30 0.001 25.2 0.9 44 57-100 49-92 (204)
115 1wi9_A Protein C20ORF116 homol 20.7 1.2E+02 0.004 19.0 3.5 29 75-103 31-59 (72)
116 3dv8_A Transcriptional regulat 20.5 85 0.0029 21.0 3.2 52 38-97 150-201 (220)
117 1ou9_A Stringent starvation pr 20.5 46 0.0016 23.2 1.7 16 42-57 14-29 (129)
118 1lj9_A Transcriptional regulat 20.3 1.5E+02 0.0053 18.5 4.3 29 73-101 51-79 (144)
119 1i1g_A Transcriptional regulat 20.3 67 0.0023 20.7 2.5 24 75-98 28-51 (141)
120 3jv1_A P22 protein; MAM33 fami 20.3 77 0.0026 22.5 3.0 24 70-93 126-149 (182)
121 2hr3_A Probable transcriptiona 20.1 77 0.0026 20.1 2.7 28 73-100 58-85 (147)
No 1
>3cuq_C Vacuolar protein-sorting-associated protein 25; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_C
Probab=100.00 E-value=9.8e-51 Score=303.67 Aligned_cols=109 Identities=35% Similarity=0.651 Sum_probs=106.0
Q ss_pred CCCHHHHHHHHHHHHhcCCeeEecCCCcEEEEEecChHHHHHHHHHHHHhcCCCCceEEeeeeccCCCcCCccccCCCHH
Q 038657 1 SLNNEARETFLSALVSEGRAEWLDKGHRKCLILWHRIQDWADIILGFVKDNGLEDSVMTVEEIRLGIESRGTELHGMDRT 80 (112)
Q Consensus 1 ~Ls~e~~~~Il~~lv~~g~aew~d~~~~~~~I~Wr~~~eWa~~Iy~Wv~~tG~~~tV~TlyEL~~Gd~t~~~ef~gmd~~ 80 (112)
|||++++++|+++|+++|+|+|+|+++++|+||||||+|||++||+||++||++|||||||||++||+|.++||||||++
T Consensus 68 ~Ls~e~~~~il~~L~~~g~aew~d~~~~~~~I~Wrt~~eWa~~iy~wv~~~G~~~sV~TlyEL~~Gd~t~~~ef~gld~~ 147 (176)
T 3cuq_C 68 KLPVESIQIVLEELRKKGNLEWLDKSKSSFLIMWRRPEEWGKLIYQWVSRSGQNNSVFTLYELTNGEDTEDEEFHGLDEA 147 (176)
T ss_dssp ECCHHHHHHHHHHHHHHTSEEECSSSSSEEEECSSCHHHHHHHHHHHHHTTTCCSCEEEHHHHHHCTTTTTSTTTTCCHH
T ss_pred cCCHHHHHHHHHHHHhcCCceeecCCCCEEEEEeCCHHHHHHHHHHHHHhcCCcCcEEEEeeeccCCCCCCCcccCCCHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCceeEEecCCCCCcceEEc
Q 038657 81 ILMRALKLLEHKGKVAIFKGTSADDEGVKFS 111 (112)
Q Consensus 81 vL~kaL~~L~k~gkAql~~~~~~~~~GVKf~ 111 (112)
+|+|||++|+|+||||||++++ +.|||||
T Consensus 148 vL~kaL~~L~~~gKaql~~~~~--~~GVKFf 176 (176)
T 3cuq_C 148 TLLRALQALQQEHKAEIITVSD--GRGVKFF 176 (176)
T ss_dssp HHHHHHHHHHHHTSEEECCTTT--SCEEEEC
T ss_pred HHHHHHHHHHHcCCeEEeecCC--CCceeeC
Confidence 9999999999999999998766 4799997
No 2
>1xb4_A VPS25, hypothetical 23.6 kDa protein in YUH1-URA8 intergenic region; winged helix, unknown function; 3.10A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_B 1u5t_C
Probab=100.00 E-value=1.9e-50 Score=307.50 Aligned_cols=110 Identities=26% Similarity=0.486 Sum_probs=104.6
Q ss_pred CCCHHHHHHHHHHHHhcCCeeEecCC--------CcEEEEEecChHHHHHHHHHHHHhcCCCCceEEeeeeccCCCcCCc
Q 038657 1 SLNNEARETFLSALVSEGRAEWLDKG--------HRKCLILWHRIQDWADIILGFVKDNGLEDSVMTVEEIRLGIESRGT 72 (112)
Q Consensus 1 ~Ls~e~~~~Il~~lv~~g~aew~d~~--------~~~~~I~Wr~~~eWa~~Iy~Wv~~tG~~~tV~TlyEL~~Gd~t~~~ 72 (112)
|||++++++|+++|+++|+|+|+|++ +++|+||||||+|||++||+||++||++|||||||||++||+|.++
T Consensus 84 rLs~e~~~~Il~~Lv~~g~aew~d~~~~~~~~~~k~~~~I~Wrtp~EWa~~I~~Wv~~tG~~~sV~TlyEL~~Gd~t~~~ 163 (202)
T 1xb4_A 84 SVSQVFIDEIWSQMTKEGKCLPIDQSGRRSSNTTTTRYFILWKSLDSWASLILQWFEDSGKLNQVITLYELSEGDETVNW 163 (202)
T ss_dssp ECCHHHHHHHHHHHHHTTSEEEESSSSBCC--CCCCEEEECSSCHHHHHHHHHHHHHTTSCTTSCEEHHHHC--CCSCCS
T ss_pred cCCHHHHHHHHHHHHhcCCeEEeCCCCcccccccCceEEEEeCCHHHHHHHHHHHHHhcCCcCcEEEeehcccCCCCCCc
Confidence 58999999999999999999999998 8899999999999999999999999999999999999999999999
Q ss_pred cccCCCHHHHHHHHHHHHhcCceeEEecCCCCCcceEEcC
Q 038657 73 ELHGMDRTILMRALKLLEHKGKVAIFKGTSADDEGVKFSV 112 (112)
Q Consensus 73 ef~gmd~~vL~kaL~~L~k~gkAql~~~~~~~~~GVKf~~ 112 (112)
||||||+++|+|||++|+||||||||++++ +.||||||
T Consensus 164 ef~gmd~~vL~kaL~~L~k~GKaqi~~~~~--~~GVKF~~ 201 (202)
T 1xb4_A 164 EFHRMPESLLYYCLKPLCDRNRATMLKDEN--DKVIAIKV 201 (202)
T ss_dssp TTTTCCHHHHHHHHHHHHGGGCCEEEECTT--SCEEEEEC
T ss_pred cccCCCHHHHHHHHHHHHHcCCEEEeecCC--CCeEEEEe
Confidence 999999999999999999999999998877 47999986
No 3
>3htu_A Vacuolar protein-sorting-associated protein 25; ESCRT-II, ESCRT-III, VPS20, VPS25, MVB, cytoplasm, nucleus, polymorphism, protein transport; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.6e-45 Score=242.68 Aligned_cols=78 Identities=32% Similarity=0.594 Sum_probs=72.9
Q ss_pred EEecChHHHHHHHHHHHHhcCCCCceEEeeeeccCCCcCCccccCCCHHHHHHHHHHHHhcCceeEEecCCCCCcceEEc
Q 038657 32 ILWHRIQDWADIILGFVKDNGLEDSVMTVEEIRLGIESRGTELHGMDRTILMRALKLLEHKGKVAIFKGTSADDEGVKFS 111 (112)
Q Consensus 32 I~Wr~~~eWa~~Iy~Wv~~tG~~~tV~TlyEL~~Gd~t~~~ef~gmd~~vL~kaL~~L~k~gkAql~~~~~~~~~GVKf~ 111 (112)
-|||||+|||++||+||++|||+|||||||||++||+|.++||||||+++|+|||++|+||||||||+++++ .|||||
T Consensus 2 ~~WrspeeWa~~Iy~Wv~~~G~~~sV~TlyEL~~Gd~t~~~ef~gmd~~~L~kaL~~L~k~gkA~i~~~~~~--~GVKFf 79 (79)
T 3htu_A 2 AMGRRPEEWGKLIYQWVSRSGQNNSVFTLYELTNGEDTEDEEFHGLDEATLLRALQALQQEHKAEIITVSDG--RGVKFF 79 (79)
T ss_dssp ---CCHHHHHHHHHHHHHTTCCSCSEECHHHHHHSSTTTTSTTTTCCHHHHHHHHHHHHHTTSEEEECCTTS--CEEEEC
T ss_pred CCcCCHHHHHHHHHHHHHHcCCCCceEEEeeeccCCCCCCCcccCCCHHHHHHHHHHHHHcCCEEEEecCCC--ceeeeC
Confidence 489999999999999999999999999999999999999999999999999999999999999999988774 599997
No 4
>2dk8_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, RNA_POL_RPC34 domain, RNA polymerase III C39 subunit, NPPSFA; NMR {Mus musculus} SCOP: a.4.5.85
Probab=86.58 E-value=0.85 Score=29.58 Aligned_cols=56 Identities=11% Similarity=0.147 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHHhcCCCCceEEeeeeccCCCcCCccccCCCHHHHHHHHHHHHhcCceeEEecCC
Q 038657 37 IQDWADIILGFVKDNGLEDSVMTVEEIRLGIESRGTELHGMDRTILMRALKLLEHKGKVAIFKGTS 102 (112)
Q Consensus 37 ~~eWa~~Iy~Wv~~tG~~~tV~TlyEL~~Gd~t~~~ef~gmd~~vL~kaL~~L~k~gkAql~~~~~ 102 (112)
+++-.+.|++-+.+.- .| |+ |+....+|-+||.+-...||+.|-++||.++|+..+
T Consensus 12 ~~~ie~~IL~l~~~~P-~G-------It--d~~L~~~~p~~~~~~r~~aIN~LL~~gkiel~K~~~ 67 (81)
T 2dk8_A 12 PVEIENRIIELCHQFP-HG-------IT--DQVIQNEMPHIEAQQRAVAINRLLSMGQLDLLRSNT 67 (81)
T ss_dssp HHHHHHHHHHHHHHCS-SC-------EE--HHHHHHHCTTSCHHHHHHHHHHHHHHTSEEEEECSS
T ss_pred HHHHHHHHHHHHHhCC-CC-------CC--HHHHHHHCCCCCHHHHHHHHHHHHHcCCeEEEecCC
Confidence 4455566666665542 11 01 222456789999999999999999999999998753
No 5
>3cuq_C Vacuolar protein-sorting-associated protein 25; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_C
Probab=84.94 E-value=0.84 Score=33.45 Aligned_cols=55 Identities=22% Similarity=0.387 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHHHhcCCCCceEEeeeeccCCCcCCcccc------CCCHHHHHHHHHHHHhcCceeEE
Q 038657 37 IQDWADIILGFVKDNGLEDSVMTVEEIRLGIESRGTELH------GMDRTILMRALKLLEHKGKVAIF 98 (112)
Q Consensus 37 ~~eWa~~Iy~Wv~~tG~~~tV~TlyEL~~Gd~t~~~ef~------gmd~~vL~kaL~~L~k~gkAql~ 98 (112)
.+-|+++|.+|...... .++++-|.. ...=|| .++++..+..|+.|+++|+|+-+
T Consensus 30 l~~W~~LIl~ycr~~k~--~~l~~~~~~-----~~pLF~N~~I~R~Ls~e~~~~il~~L~~~g~aew~ 90 (176)
T 3cuq_C 30 LAAWCSLVLSFCRLHKQ--SSMTVMEAQ-----ESPLFNNVKLQRKLPVESIQIVLEELRKKGNLEWL 90 (176)
T ss_dssp HHHHHHHHHHHHHHHTC--CEEEHHHHH-----TSTTSEETTTTEECCHHHHHHHHHHHHHHTSEEEC
T ss_pred HHHHHHHHHHHHHHhCe--eEeeccccc-----cCCCcCCccccCcCCHHHHHHHHHHHHhcCCceee
Confidence 57899999999998764 333332221 122343 69999999999999999999988
No 6
>1xb4_A VPS25, hypothetical 23.6 kDa protein in YUH1-URA8 intergenic region; winged helix, unknown function; 3.10A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_B 1u5t_C
Probab=75.28 E-value=8.3 Score=28.69 Aligned_cols=63 Identities=16% Similarity=0.294 Sum_probs=42.5
Q ss_pred hHHHHHHHHHHHHhcCCCCceEEeeeeccCC--------------CcCCcccc------CCCHHHHHHHHHHHHhcCcee
Q 038657 37 IQDWADIILGFVKDNGLEDSVMTVEEIRLGI--------------ESRGTELH------GMDRTILMRALKLLEHKGKVA 96 (112)
Q Consensus 37 ~~eWa~~Iy~Wv~~tG~~~tV~TlyEL~~Gd--------------~t~~~ef~------gmd~~vL~kaL~~L~k~gkAq 96 (112)
.+-|+++|.+|...... .++++-|..+.+ .....=|| .++++..+..|..|+++|+|+
T Consensus 27 l~~W~~LIL~ycr~~ki--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~pLF~N~~I~RrLs~e~~~~Il~~Lv~~g~ae 104 (202)
T 1xb4_A 27 ISTWIDIISQYCKTKKI--WYMSVDGTVINDNELDSGSTDNDDSKKISKNLFNNEDIQRSVSQVFIDEIWSQMTKEGKCL 104 (202)
T ss_dssp HHHHHHHHHHHHHHTTC--CEEETTSBBCCC-----------------CBTTEETTTTEECCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHHhCe--eEeccccccccccccccccccccccccccCCCcCCccccCcCCHHHHHHHHHHHHhcCCeE
Confidence 57899999999988543 234433322110 00112353 699999999999999999999
Q ss_pred EEecC
Q 038657 97 IFKGT 101 (112)
Q Consensus 97 l~~~~ 101 (112)
-+...
T Consensus 105 w~d~~ 109 (202)
T 1xb4_A 105 PIDQS 109 (202)
T ss_dssp EESSS
T ss_pred EeCCC
Confidence 99543
No 7
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=67.90 E-value=17 Score=23.69 Aligned_cols=91 Identities=15% Similarity=0.252 Sum_probs=55.6
Q ss_pred CCHHHHHHHHHHHHhcCCeeEecCCCcEEEEEecChHHHHHHHHHHHHhcCCCCceEEeeeeccCCCc---CCccccCCC
Q 038657 2 LNNEARETFLSALVSEGRAEWLDKGHRKCLILWHRIQDWADIILGFVKDNGLEDSVMTVEEIRLGIES---RGTELHGMD 78 (112)
Q Consensus 2 Ls~e~~~~Il~~lv~~g~aew~d~~~~~~~I~Wr~~~eWa~~Iy~Wv~~tG~~~tV~TlyEL~~Gd~t---~~~ef~gmd 78 (112)
++++.+...++.|+..|++.-.+++....++-=...++|...|.+-+.+-=+.+- +..|-.. ...-|-.+|
T Consensus 29 l~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~yH~~~P------~~~G~~keeLr~~~~~~~~ 102 (135)
T 2v9v_A 29 LSLEETRKLLQSMAAAGQVTLLRVENDLYAISTERYQAWWQAVTRALEEFHSRYP------LRPGLAREELRSRYFSRLP 102 (135)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHCT------TSSCEEHHHHHHHHCTTSC
T ss_pred CCHHHHHHHHHHHHhCCcEEEEecCCCeEEecHHHHHHHHHHHHHHHHHHHHhCC------CccCCCHHHHHHHhcccCC
Confidence 5788889999999999997777653323344434445555555555543110000 1222110 111134579
Q ss_pred HHHHHHHHHHHHhcCceeEE
Q 038657 79 RTILMRALKLLEHKGKVAIF 98 (112)
Q Consensus 79 ~~vL~kaL~~L~k~gkAql~ 98 (112)
+.++...|+.|+++|+...-
T Consensus 103 ~~~~~~ll~~l~~~g~l~~~ 122 (135)
T 2v9v_A 103 ARVYQALLEEWSREGRLQLA 122 (135)
T ss_dssp HHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHHHHCCCEEec
Confidence 99999999999999998875
No 8
>2dll_A Interferon regulatory factor 4; IRF domain, NF-EM5, multiple myeloma oncogene 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.61 E-value=13 Score=25.40 Aligned_cols=48 Identities=15% Similarity=0.266 Sum_probs=36.5
Q ss_pred HHHHHHHHHhcCC---eeEecCCCcEEEEEecC-------hHHHHHHHHHHHHhcCCC
Q 038657 7 RETFLSALVSEGR---AEWLDKGHRKCLILWHR-------IQDWADIILGFVKDNGLE 54 (112)
Q Consensus 7 ~~~Il~~lv~~g~---aew~d~~~~~~~I~Wr~-------~~eWa~~Iy~Wv~~tG~~ 54 (112)
++.-|-.++.+|+ ..|+|..++.+.|=|+. .++=+.+.-+|+..+|..
T Consensus 9 lr~WL~~qidsg~ypGL~W~d~ekt~FrIPWkH~~r~~~~~~~D~~iFkaWA~~~Gk~ 66 (121)
T 2dll_A 9 LRQWLIDQIDSGKYPGLVWENEEKSIFRIPWKHAGKQDYNREEDAALFKAWALFKGKF 66 (121)
T ss_dssp HHHHHHHHHHHTCSSSCEESSSSSCEEEEECCCCCCSSSCHHHHTHHHHHHHHHHSCC
T ss_pred hHHHHHHHhccCCCCCceEecCCCCEEEeeCccCCcCCCCcchhhHHHHHHHHHcCCC
Confidence 3444555555554 89999999999999985 333388899999999974
No 9
>2irf_G IRF-2, interferon regulatory factor 2; transcription factor, IFN induction, IRF family, gene regulation/DNA complex; HET: DNA 5IU; 2.20A {Mus musculus} SCOP: a.4.5.23 PDB: 1irf_A 1irg_A 1if1_A*
Probab=67.59 E-value=17 Score=24.60 Aligned_cols=48 Identities=17% Similarity=0.400 Sum_probs=38.6
Q ss_pred HHHHHHHHHhcCC---eeEecCCCcEEEEEecC-------hHHHHHHHHHHHHhcCCC
Q 038657 7 RETFLSALVSEGR---AEWLDKGHRKCLILWHR-------IQDWADIILGFVKDNGLE 54 (112)
Q Consensus 7 ~~~Il~~lv~~g~---aew~d~~~~~~~I~Wr~-------~~eWa~~Iy~Wv~~tG~~ 54 (112)
++.-|-..+.+|+ ..|+|..++.+.|=|+- .++=+.+.-+|+.-+|.-
T Consensus 8 lrpWL~~qi~sg~ypGL~W~d~~kt~FrIPWkHa~r~~~~~e~D~~IFkaWA~~~Gk~ 65 (113)
T 2irf_G 8 MRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAIHTGKH 65 (113)
T ss_dssp HHHHHHHHHHTTCSTTCEEEETTTTEEEEECCCTTSTTCCHHHHSHHHHHHHHHTTSC
T ss_pred hHHHHHHHhccCCCCCceEEcCCCCEEEEeeeeCCcCCccccchhHHHHHHHHHhCCC
Confidence 3444556666775 89999999999999984 466788999999999985
No 10
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.51 E-value=9 Score=25.18 Aligned_cols=56 Identities=20% Similarity=0.283 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHHhcCCCCceEEeeeeccCCCcCCccccCCCHHHHHHHHHHHHhcCceeEEecCC
Q 038657 37 IQDWADIILGFVKDNGLEDSVMTVEEIRLGIESRGTELHGMDRTILMRALKLLEHKGKVAIFKGTS 102 (112)
Q Consensus 37 ~~eWa~~Iy~Wv~~tG~~~tV~TlyEL~~Gd~t~~~ef~gmd~~vL~kaL~~L~k~gkAql~~~~~ 102 (112)
+.+=-.+||+-+++.|..| ++.-+|.. =-|||...+.++|+.||.+|=..-++...
T Consensus 35 Lt~~E~lVy~~I~~aGn~G--Iw~kdL~~--------~tnL~~~~vtkiLK~LE~k~lIK~Vksv~ 90 (95)
T 2yu3_A 35 SDNQEKLVYQIIEDAGNKG--IWSRDVRY--------KSNLPLTEINKILKNLESKKLIKAVKSVS 90 (95)
T ss_dssp CSHHHHHHHHHHHHHTTSC--EEHHHHHH--------HHTCCHHHHHHHHHHHHHHTSEEEECCSC
T ss_pred CCHHHHHHHHHHHHhCCCC--CCHHHHHH--------HhCCCHHHHHHHHHHHHhCCCEEEecCcc
Confidence 3455678999999999877 23334442 25799999999999999999887776543
No 11
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=66.04 E-value=12 Score=23.45 Aligned_cols=48 Identities=17% Similarity=0.235 Sum_probs=37.0
Q ss_pred HHHHHHHHhc-----CCCCceEEeeeeccCCCcCCccccCCCHHHHHHHHHHHHhcCceeEEec
Q 038657 42 DIILGFVKDN-----GLEDSVMTVEEIRLGIESRGTELHGMDRTILMRALKLLEHKGKVAIFKG 100 (112)
Q Consensus 42 ~~Iy~Wv~~t-----G~~~tV~TlyEL~~Gd~t~~~ef~gmd~~vL~kaL~~L~k~gkAql~~~ 100 (112)
..|++++.+. |. ..|+-||++. -|+.+.-.++-|+.|+++|...-..+
T Consensus 7 ~~IL~~I~~~i~~~~g~---~psv~EIa~~--------lgvS~~TVrr~L~~Le~kG~I~R~~g 59 (77)
T 2jt1_A 7 TKIISIVQERQNMDDGA---PVKTRDIADA--------AGLSIYQVRLYLEQLHDVGVLEKVNA 59 (77)
T ss_dssp HHHHHHHHHHHHHHTTS---CEEHHHHHHH--------HTCCHHHHHHHHHHHHHTTSEEEESC
T ss_pred HHHHHHHHHHHhhccCC---CcCHHHHHHH--------HCCCHHHHHHHHHHHHHCCcEEecCC
Confidence 4566666665 44 4899999853 56778889999999999999988753
No 12
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=64.81 E-value=34 Score=25.33 Aligned_cols=84 Identities=13% Similarity=0.118 Sum_probs=57.8
Q ss_pred CCHHHHHHHHHHHHhcCCeeEecCCCcEEEEEe---cChHH---HHHHHHHHHHhcCCCCceEEeeeeccCCCcCCcccc
Q 038657 2 LNNEARETFLSALVSEGRAEWLDKGHRKCLILW---HRIQD---WADIILGFVKDNGLEDSVMTVEEIRLGIESRGTELH 75 (112)
Q Consensus 2 Ls~e~~~~Il~~lv~~g~aew~d~~~~~~~I~W---r~~~e---Wa~~Iy~Wv~~tG~~~tV~TlyEL~~Gd~t~~~ef~ 75 (112)
+|+..+..+++.|++.|...-.+. .+..-- .-+++ -...|++.+.+.|+.- -+++||.+. .
T Consensus 101 ~~~~l~~~ll~~l~~~g~l~~~~~---~v~l~~h~~~~~~~~~~~~~~i~~~~~~~g~~p--p~~~dl~~~--------l 167 (258)
T 1lva_A 101 LPARVYQALLEEWSREGRLQLAAN---TVALAGFTPSFSETQKKLLKDLEDKYRVSRWQP--PSFKEVAGS--------F 167 (258)
T ss_dssp SCHHHHHHHHHHHHHTTSEEEETT---EEEETTCCCCCCHHHHHHHHHHHHHHHHHTTSC--CBHHHHHHH--------T
T ss_pred CCHHHHHHHHHHHHHCCCEEecCC---EEeCCCCccCCCHHHHHHHHHHHHHHHHCCCCC--CCHHHHHhH--------h
Confidence 678889999999999997654332 111111 11223 3455777777777653 366676643 5
Q ss_pred CCCHHHHHHHHHHHHhcCceeEE
Q 038657 76 GMDRTILMRALKLLEHKGKVAIF 98 (112)
Q Consensus 76 gmd~~vL~kaL~~L~k~gkAql~ 98 (112)
++|+..++..|+.|+++|+..-+
T Consensus 168 ~~~~~~~~~~l~~l~~~g~lv~l 190 (258)
T 1lva_A 168 NLDPSELEELLHYLVREGVLVKI 190 (258)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEES
T ss_pred CCCHHHHHHHHHHHHHCCCEEEe
Confidence 68999999999999999998776
No 13
>3zxw_B Ribulose bisphosphate carboxylase small chain; CO2/O2 specificity, carbon dioxide fixation, photosynthesis, thermostability; HET: KCX CAP; 2.10A {Thermosynechococcus elongatus} PDB: 2ybv_B*
Probab=63.20 E-value=7.1 Score=26.88 Aligned_cols=36 Identities=11% Similarity=0.292 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHHHhcCC---eeEecCCC--cEEEEEecCh
Q 038657 2 LNNEARETFLSALVSEGR---AEWLDKGH--RKCLILWHRI 37 (112)
Q Consensus 2 Ls~e~~~~Il~~lv~~g~---aew~d~~~--~~~~I~Wr~~ 37 (112)
|+.+.|..=+++|+++|- +|+.|+.+ +++|-+|+-|
T Consensus 19 Lt~eqI~kQV~yll~qGw~~~lE~~d~~~~~~~yW~mWklP 59 (118)
T 3zxw_B 19 LSDAQIARQIQYAIDQGYHPCVEFNETSNAEIRYWTMWKLP 59 (118)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEEEESCCCTTCCCCEEESSC
T ss_pred CCHHHHHHHHHHHHhCCCeeEEEeccCCCcccCEEeecccC
Confidence 788999999999999996 67777665 4677777654
No 14
>1rbl_M Ribulose 1,5 bisphosphate carboxylase/oxygenase ( chain); lyase(carbon-carbon), lyase; HET: CAP; 2.20A {Synechococcus elongatus} SCOP: d.73.1.1 PDB: 1rsc_M*
Probab=62.24 E-value=7.1 Score=26.48 Aligned_cols=35 Identities=11% Similarity=0.324 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHHHhcCC---eeEecCCC--cEEEEEecC
Q 038657 2 LNNEARETFLSALVSEGR---AEWLDKGH--RKCLILWHR 36 (112)
Q Consensus 2 Ls~e~~~~Il~~lv~~g~---aew~d~~~--~~~~I~Wr~ 36 (112)
|+.+.|..=+++|+++|- +|+.|+++ +++|-+|+-
T Consensus 20 lt~eqI~kQI~Yll~qGw~p~lEf~d~~~~~~~yW~mwkl 59 (109)
T 1rbl_M 20 LSDRQIAAQIEYMIEQGFHPLIEFNEHSNPEEFYWTMWKL 59 (109)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEEEESCCCTTCCCCEECSS
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEeccCccccccEEeeccc
Confidence 788999999999999995 67777665 577788873
No 15
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=61.96 E-value=25 Score=22.95 Aligned_cols=49 Identities=18% Similarity=0.196 Sum_probs=42.9
Q ss_pred CCHHHHHHHHHHHHhcCCeeEecCCCcEEEEEecChHHHHHHHHHHHHhcCC
Q 038657 2 LNNEARETFLSALVSEGRAEWLDKGHRKCLILWHRIQDWADIILGFVKDNGL 53 (112)
Q Consensus 2 Ls~e~~~~Il~~lv~~g~aew~d~~~~~~~I~Wr~~~eWa~~Iy~Wv~~tG~ 53 (112)
++...++.++..|++.|.+.-++.. .++.-...++-++.|.+++.++|.
T Consensus 32 ~~~~~~~~~l~~l~~~G~l~~i~~~---~~~~~~~~~~~~~~l~~~~~~~~~ 80 (121)
T 2pjp_A 32 TDEQAMRLTLRQAAQQGIITAIVKD---RYYRNDRIVEFANMIRDLDQECGS 80 (121)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEEETT---EEEEHHHHHHHHHHHHHHHHHHSS
T ss_pred CCHHHHHHHHHHHHHCCCEEEecCC---ceECHHHHHHHHHHHHHHHHHCCC
Confidence 5678889999999999999998764 777888899999999999999854
No 16
>1bwv_S Rubisco, protein (ribulose bisphosphate carboxylase); carbon dioxide fixation, complex (rubisco-reaction intermedi high specificity factor; HET: KCX CAP; 2.40A {Galdieria partita} SCOP: d.73.1.1 PDB: 1iwa_B
Probab=61.06 E-value=7.6 Score=27.46 Aligned_cols=34 Identities=18% Similarity=0.344 Sum_probs=27.8
Q ss_pred CCHHHHHHHHHHHHhcCC---eeEecCCC--cEEEEEec
Q 038657 2 LNNEARETFLSALVSEGR---AEWLDKGH--RKCLILWH 35 (112)
Q Consensus 2 Ls~e~~~~Il~~lv~~g~---aew~d~~~--~~~~I~Wr 35 (112)
|+.+.|..=+++|+++|- +|+.|+.+ +++|-+|+
T Consensus 14 ltdeqI~kQI~Yll~qGw~p~iEf~d~~~~r~~yW~mWk 52 (138)
T 1bwv_S 14 LTDEQIKKQIDYMISKKLAIGIEYTNDIHPRNAYWEIWG 52 (138)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEEESCCCTTCCCCEECS
T ss_pred CCHHHHHHHHHHHHHCCCeeeEEecCCCCCccCEEeccC
Confidence 788999999999999995 67777654 56777777
No 17
>1svd_M Ribulose bisphosphate carboxylase small chain; beta-alpha-barrel, lyase; 1.80A {Halothiobacillus neapolitanus} SCOP: d.73.1.1
Probab=60.19 E-value=7.6 Score=26.39 Aligned_cols=35 Identities=14% Similarity=0.343 Sum_probs=27.9
Q ss_pred CCHHHHHHHHHHHHhcCC---eeEecCCC--cEEEEEecC
Q 038657 2 LNNEARETFLSALVSEGR---AEWLDKGH--RKCLILWHR 36 (112)
Q Consensus 2 Ls~e~~~~Il~~lv~~g~---aew~d~~~--~~~~I~Wr~ 36 (112)
|+.+.|..=+++|+++|- +|+.|+++ +++|-+|+-
T Consensus 22 lt~eqI~kQV~Yll~qGw~p~iEf~d~~~~~~~yW~mwkl 61 (110)
T 1svd_M 22 MNAERIRAQIKYAIAQGWSPGIEHVEVKNSMNQYWYMWKL 61 (110)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEEECGGGTTCSCCEEESC
T ss_pred CCHHHHHHHHHHHHHCCCeeEEEeccCCccCCcEEeeccc
Confidence 788999999999999995 67776654 577888873
No 18
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=58.57 E-value=17 Score=21.84 Aligned_cols=45 Identities=27% Similarity=0.169 Sum_probs=32.2
Q ss_pred HHHHHHHhcCCCCceEEeeeeccCCCcCCccccCCCHHHHHHHHHHHHhcCceeEEe
Q 038657 43 IILGFVKDNGLEDSVMTVEEIRLGIESRGTELHGMDRTILMRALKLLEHKGKVAIFK 99 (112)
Q Consensus 43 ~Iy~Wv~~tG~~~tV~TlyEL~~Gd~t~~~ef~gmd~~vL~kaL~~L~k~gkAql~~ 99 (112)
.|++.+.++|. +|.-||+ +--|++.+-+.+.|+.|++.|-.+-..
T Consensus 4 ~Il~~L~~~~~----~s~~eLa--------~~lgvs~~tv~r~L~~L~~~GlI~~~~ 48 (81)
T 2htj_A 4 EILEFLNRHNG----GKTAEIA--------EALAVTDYQARYYLLLLEKAGMVQRSP 48 (81)
T ss_dssp HHHHHHHHSCC----CCHHHHH--------HHHTSCHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHcCC----CCHHHHH--------HHHCcCHHHHHHHHHHHHHCCCEEEec
Confidence 45666665542 3444444 346899999999999999999987553
No 19
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=58.42 E-value=26 Score=25.93 Aligned_cols=94 Identities=24% Similarity=0.220 Sum_probs=65.2
Q ss_pred CCHHHHHHHHHHHHhcCCeeEecC-CCcEEEEEe--cChHHHHHHHHHHHHhcCCCCceEEeeeeccCCCcCCccccCCC
Q 038657 2 LNNEARETFLSALVSEGRAEWLDK-GHRKCLILW--HRIQDWADIILGFVKDNGLEDSVMTVEEIRLGIESRGTELHGMD 78 (112)
Q Consensus 2 Ls~e~~~~Il~~lv~~g~aew~d~-~~~~~~I~W--r~~~eWa~~Iy~Wv~~tG~~~tV~TlyEL~~Gd~t~~~ef~gmd 78 (112)
+||+.+..-.+.|..-|..--+-+ ++....|-= ++.+.=.+.|.+|+.+.|. +|..+|.. =.|.+
T Consensus 114 VSp~Dl~~A~~~l~~Lg~~~~l~~~~sg~~vvqs~~~~~~~~~~~il~~~~~~g~----vt~~~la~--------~l~ws 181 (218)
T 3cuq_B 114 LSPEDLVNACKMLEALKLPLRLRVFDSGVMVIELQSHKEEEMVASALETVSEKGS----LTSEEFAK--------LVGMS 181 (218)
T ss_dssp CCHHHHHHHHHTTTTTTCSEEEEECTTSBEEEEETTCCGGGGHHHHHHHHHHTSC----BCHHHHHH--------HHTCC
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEECCCcEEEEcCCCchHHHHHHHHHHHHHCCC----cCHHHHHH--------HhCCC
Confidence 789999999999988776432322 111233332 2344678889999987653 45555552 24899
Q ss_pred HHHHHHHHHHHHhcCceeEEecCCCCCcceEEc
Q 038657 79 RTILMRALKLLEHKGKVAIFKGTSADDEGVKFS 111 (112)
Q Consensus 79 ~~vL~kaL~~L~k~gkAql~~~~~~~~~GVKf~ 111 (112)
..+-+.+|..++++|-+.+=. . ..|..||
T Consensus 182 ~~~a~e~L~~~e~~G~l~~D~--~--~eg~~y~ 210 (218)
T 3cuq_B 182 VLLAKERLLLAEKMGHLCRDD--S--VEGLRFY 210 (218)
T ss_dssp HHHHHHHHHHHHHTTSEEEEE--S--SSCEEEE
T ss_pred HHHHHHHHHHHHHcCCEEEEC--C--CCceEEe
Confidence 999999999999999999853 2 3478775
No 20
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=57.61 E-value=12 Score=24.14 Aligned_cols=45 Identities=16% Similarity=0.208 Sum_probs=34.6
Q ss_pred HHHHHHHhcCCCCceEEeeeeccCCCcCCccccCCCHHHHHHHHHHHHhcCceeEEe
Q 038657 43 IILGFVKDNGLEDSVMTVEEIRLGIESRGTELHGMDRTILMRALKLLEHKGKVAIFK 99 (112)
Q Consensus 43 ~Iy~Wv~~tG~~~tV~TlyEL~~Gd~t~~~ef~gmd~~vL~kaL~~L~k~gkAql~~ 99 (112)
.|.+.+.+.|. +|+-||. +-.++++.-+++-|+.|+++|+..=..
T Consensus 6 ~Il~~L~~~g~----vsv~eLA--------~~l~VS~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 6 EVRDMLALQGR----MEAKQLS--------ARLQTPQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHHHSCS----EEHHHHH--------HHTTCCHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHcCC----CcHHHHH--------HHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 46666666653 5666665 345899999999999999999988773
No 21
>4f0h_B Ribulose bisphosphate carboxylase small chain; alpha beta domain, catalytic domain TIM barrel, carboxylase/oxygenase, nitrosylation; 1.96A {Galdieria sulphuraria} PDB: 4f0k_B 4f0m_B 1iwa_B 1bwv_S*
Probab=57.05 E-value=11 Score=26.65 Aligned_cols=35 Identities=17% Similarity=0.315 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHHHhcCC---eeEecCCC--cEEEEEecC
Q 038657 2 LNNEARETFLSALVSEGR---AEWLDKGH--RKCLILWHR 36 (112)
Q Consensus 2 Ls~e~~~~Il~~lv~~g~---aew~d~~~--~~~~I~Wr~ 36 (112)
|+.+.|..=+++|+++|- +|+.|+.+ +++|-+|+-
T Consensus 14 ltd~qI~kQI~YlL~qGw~~~iEf~d~~~~r~~yW~mWkL 53 (138)
T 4f0h_B 14 LTDEQIKKQIDYMISKKLAIGIEYTNDIHPRNSFWEMWGL 53 (138)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEEESCCCTTCCCCEESSC
T ss_pred CCHHHHHHHHHHHHhCCCEEEEEeCCCCCCcCCEEeecCC
Confidence 788999999999999995 67777654 567777773
No 22
>1bxn_I Rubisco, protein (ribulose bisphosphate carboxylase small; lyase (carbon-carbon), lyase; 2.70A {Cupriavidus necator} SCOP: d.73.1.1
Probab=56.76 E-value=9.3 Score=27.04 Aligned_cols=34 Identities=21% Similarity=0.308 Sum_probs=27.6
Q ss_pred CCHHHHHHHHHHHHhcCC---eeEecCCC--cEEEEEec
Q 038657 2 LNNEARETFLSALVSEGR---AEWLDKGH--RKCLILWH 35 (112)
Q Consensus 2 Ls~e~~~~Il~~lv~~g~---aew~d~~~--~~~~I~Wr 35 (112)
|+.+.|..=+++|+++|- +|+.|+.+ +++|-+|+
T Consensus 14 ltdeqI~kQI~YlL~qGw~p~lE~~d~~~~r~~yW~mWk 52 (139)
T 1bxn_I 14 LTDEQITKQLEYCLNQGWAVGLEYTDDPHPRNTYWEMFG 52 (139)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEEEESCCCTTCCCCEESS
T ss_pred CCHHHHHHHHHHHHHCCCeEEEEeccCCccccCEEeecC
Confidence 788999999999999995 67777654 56777777
No 23
>1gk8_I Ribulose bisphosphate carboxylase small chain 1; lyase, rubisco, photosynthesis; HET: KCX CAP; 1.4A {Chlamydomonas reinhardtii} SCOP: d.73.1.1 PDB: 2v63_I* 2v67_I* 2v68_I* 2v69_I* 2v6a_I* 2vdh_I* 2vdi_I* 1uw9_C* 1uwa_C* 1ir2_I* 1uzd_C* 1uzh_C*
Probab=55.31 E-value=8.9 Score=27.19 Aligned_cols=35 Identities=17% Similarity=0.415 Sum_probs=28.7
Q ss_pred CCHHHHHHHHHHHHhcCC---eeEecCCC--------------------cEEEEEecC
Q 038657 2 LNNEARETFLSALVSEGR---AEWLDKGH--------------------RKCLILWHR 36 (112)
Q Consensus 2 Ls~e~~~~Il~~lv~~g~---aew~d~~~--------------------~~~~I~Wr~ 36 (112)
|+.+.|..=+++|+++|- +|+.|+++ +++|-+|+-
T Consensus 21 lt~eqI~kQI~YlL~qGw~p~lEf~d~~~~~r~~~~~~~~~~~~~~yyd~~YW~mWkL 78 (140)
T 1gk8_I 21 LTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKL 78 (140)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEEECGGGTSCBCGGGGGCSSCCTTCCBTSSCEEESC
T ss_pred CCHHHHHHHHHHHHHCCCEeeEEeccCCcceecccccccccccCCCcCcCCeeeeCCc
Confidence 788999999999999995 67777665 568899983
No 24
>1wdd_S Ribulose bisphosphate carboxylase small chain C; rubisco, photosynthesis, alpha/beta barrel, N-methylmethioni translational modification, lyase; HET: KCX CAP; 1.35A {Oryza sativa} SCOP: d.73.1.1 PDB: 3axm_S* 3axk_S* 8ruc_I* 1aus_S 1rbo_S* 1rco_S* 1rcx_S* 1rxo_S* 1upm_C* 1upp_I* 1aa1_S* 3rub_S 1rlc_S* 1rld_S 1ej7_S 1ir1_S* 4rub_S*
Probab=54.64 E-value=14 Score=25.68 Aligned_cols=36 Identities=17% Similarity=0.243 Sum_probs=28.7
Q ss_pred CCHHHHHHHHHHHHhcCC---eeEecCC---Cc----------EEEEEecCh
Q 038657 2 LNNEARETFLSALVSEGR---AEWLDKG---HR----------KCLILWHRI 37 (112)
Q Consensus 2 Ls~e~~~~Il~~lv~~g~---aew~d~~---~~----------~~~I~Wr~~ 37 (112)
|+.+.|..=+++|+++|- .|+.|++ ++ ++|-+|+-|
T Consensus 21 lt~eqI~kQI~Yll~qGw~p~lEf~d~~~~~R~~~~~~~~~~~~yW~mWkLP 72 (128)
T 1wdd_S 21 LTVEDLLKQIEYLLRSKWVPCLEFSKVGFVYRENHRSPGYYDGRYWTMWKLP 72 (128)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEEESCCSCBCSSCCSTTCCBSCCCEEESCC
T ss_pred CCHHHHHHHHHHHHHCCCeeeEEecCCCceeeccCCCCCcccCCcccccCcc
Confidence 788999999999999995 6777766 23 788888844
No 25
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=53.92 E-value=51 Score=22.70 Aligned_cols=83 Identities=12% Similarity=0.031 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHHHHhcCCeeEe----cCCC---cEEEEEecChHH-----HHHHHHHHHHhcCCCCceEEeeeeccCCCc
Q 038657 2 LNNEARETFLSALVSEGRAEWL----DKGH---RKCLILWHRIQD-----WADIILGFVKDNGLEDSVMTVEEIRLGIES 69 (112)
Q Consensus 2 Ls~e~~~~Il~~lv~~g~aew~----d~~~---~~~~I~Wr~~~e-----Wa~~Iy~Wv~~tG~~~tV~TlyEL~~Gd~t 69 (112)
+|+..+...++.|.++|-+... |+.+ ..++|.++-+.. +...+.+..+.-.....|...| +.|+..
T Consensus 43 lS~~tv~~~l~~L~~~G~I~~~~~~~d~~~lG~~~a~v~v~~~~~~~~~f~~~~~~~~~~~l~~~peV~~~~--vtG~~d 120 (171)
T 2ia0_A 43 KPESTIHFRIKKLQERGVIERYTIILGEQLKPKHLALIVLEVGKPVIEDFLERYISYISSTLSALPGVLFVA--KSGEDK 120 (171)
T ss_dssp SCHHHHHHHHHHHHHTTSEEEEEEEECTTTSCSEEEEEEEEESCC--CHHHHHHHHHHHHHHHTSTTEEEEE--EETTTE
T ss_pred cCHHHHHHHHHHHHHCCCEEeecccCCHHHhhcceEEEEEEECCccccccchhHHHHHHHHHHCCCCeEEEE--EcCCCC
Confidence 7899999999999999988653 3332 257787887766 6666666677777788999999 678653
Q ss_pred CCccccCCCHHHHHHHH
Q 038657 70 RGTELHGMDRTILMRAL 86 (112)
Q Consensus 70 ~~~ef~gmd~~vL~kaL 86 (112)
.--..+.=|.+-|.+.+
T Consensus 121 ll~~v~~~d~~~l~~~l 137 (171)
T 2ia0_A 121 IIALVGKNNKDELVKFI 137 (171)
T ss_dssp EEEEEEESSTTHHHHHH
T ss_pred EEEEEEECCHHHHHHHH
Confidence 22233333433455555
No 26
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=53.05 E-value=3.5 Score=28.95 Aligned_cols=43 Identities=14% Similarity=0.058 Sum_probs=33.9
Q ss_pred eEEeeeeccCCCcCCccccCCCHHHHHHHHHHHHhcCceeEEe
Q 038657 57 VMTVEEIRLGIESRGTELHGMDRTILMRALKLLEHKGKVAIFK 99 (112)
Q Consensus 57 V~TlyEL~~Gd~t~~~ef~gmd~~vL~kaL~~L~k~gkAql~~ 99 (112)
-+|.|||.+-=+.....|.++.+..+-.+|+.|++.|=.+--.
T Consensus 15 ~~~gyel~~~l~~~~~~~~~~s~~~ly~~L~~Le~~GlI~~~~ 57 (179)
T 1yg2_A 15 DATGYDITKEFSASIGYFWKASHQQVYRELNKMGEQGLVTCVL 57 (179)
T ss_dssp CBCHHHHHHHHTTGGGGTCCCCHHHHHHHHHHHHHTTSEEECC
T ss_pred CCCHHHHHHHHHHHhCCccCCCcCcHHHHHHHHHHCCCeEEEe
Confidence 3788998875433344578999999999999999999877653
No 27
>1ucr_A Protein DSVD; dissimilatory sulfite reductase D, DNA binding motif, sulfate-reducing bacteria, winged-helix motif, unknown function; 1.20A {Desulfovibrio vulgaris} SCOP: a.4.5.45 PDB: 1wq2_A
Probab=50.66 E-value=24 Score=22.66 Aligned_cols=30 Identities=20% Similarity=0.367 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHHHhcCCeeEecCCCcEEE
Q 038657 2 LNNEARETFLSALVSEGRAEWLDKGHRKCL 31 (112)
Q Consensus 2 Ls~e~~~~Il~~lv~~g~aew~d~~~~~~~ 31 (112)
..+..+.-|+..||..|.+++-..+.|..+
T Consensus 34 ~k~r~vKK~~~~LV~Eg~leywSSGSTTmy 63 (78)
T 1ucr_A 34 MKQREVKKILTALVNDEVLEYWSSGSTTMY 63 (78)
T ss_dssp SCHHHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred cCHHHHHHHHHHHHhcCceEEEecCCeEEE
Confidence 356788899999999999998777655443
No 28
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=50.17 E-value=18 Score=22.07 Aligned_cols=45 Identities=22% Similarity=0.575 Sum_probs=35.1
Q ss_pred HHHHHHHHhcCCCCceEEeeeeccCCCcCCccccCCCHHHHHHHHHHHHhcCceeE
Q 038657 42 DIILGFVKDNGLEDSVMTVEEIRLGIESRGTELHGMDRTILMRALKLLEHKGKVAI 97 (112)
Q Consensus 42 ~~Iy~Wv~~tG~~~tV~TlyEL~~Gd~t~~~ef~gmd~~vL~kaL~~L~k~gkAql 97 (112)
..|++++.++| -|+.+...+ .-||.+.+...++|+.|+.+|=..+
T Consensus 13 ~~lL~yIr~sG---GildI~~~a--------~kygV~kdeV~~~LrrLe~KGLI~l 57 (59)
T 2xvc_A 13 RELLDYIVNNG---GFLDIEHFS--------KVYGVEKQEVVKLLEALKNKGLIAV 57 (59)
T ss_dssp HHHHHHHHHTT---SEEEHHHHH--------HHHCCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHcC---CEEeHHHHH--------HHhCCCHHHHHHHHHHHHHCCCeec
Confidence 46888888876 355555544 4599999999999999999997665
No 29
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=49.47 E-value=22 Score=22.68 Aligned_cols=54 Identities=20% Similarity=0.261 Sum_probs=41.2
Q ss_pred ChHHHHHHHHHHHHhcCCCCceEEeeeeccCCCcCCccccCCCHHHHHHHHHHHHhcCceeEEecC
Q 038657 36 RIQDWADIILGFVKDNGLEDSVMTVEEIRLGIESRGTELHGMDRTILMRALKLLEHKGKVAIFKGT 101 (112)
Q Consensus 36 ~~~eWa~~Iy~Wv~~tG~~~tV~TlyEL~~Gd~t~~~ef~gmd~~vL~kaL~~L~k~gkAql~~~~ 101 (112)
++++| +||+-+.+.|..| +|-=||. +--+|+...+.++|+.|+++|=..-.+..
T Consensus 19 t~~q~--~Vl~~I~~~g~~g--i~qkeLa--------~~~~l~~~tvt~iLk~LE~kglIkr~~~~ 72 (91)
T 2dk5_A 19 DNQEK--LVYQIIEDAGNKG--IWSRDVR--------YKSNLPLTEINKILKNLESKKLIKAVKSV 72 (91)
T ss_dssp CSSHH--HHHHHHHHHCTTC--EEHHHHH--------HHTTCCHHHHHHHHHHHHHTTSEEEECCS
T ss_pred CHHHH--HHHHHHHHcCCCC--cCHHHHH--------HHHCCCHHHHHHHHHHHHHCCCEEEecCC
Confidence 55665 6888888877655 4555665 33679999999999999999988766554
No 30
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=49.34 E-value=19 Score=21.46 Aligned_cols=56 Identities=13% Similarity=0.103 Sum_probs=39.7
Q ss_pred HHHHHHHHhcCCCCceEEeeeeccCCCcCCccccCCCHHHHHHHHHHHHhcCceeEEecCC
Q 038657 42 DIILGFVKDNGLEDSVMTVEEIRLGIESRGTELHGMDRTILMRALKLLEHKGKVAIFKGTS 102 (112)
Q Consensus 42 ~~Iy~Wv~~tG~~~tV~TlyEL~~Gd~t~~~ef~gmd~~vL~kaL~~L~k~gkAql~~~~~ 102 (112)
..|++.+.+.+ +.-+|+.||.+- ....+.+++.+-+.+.|+.|++.|-+.-..+++
T Consensus 20 ~~IL~~l~~~~--~~~~s~~el~~~---l~~~~~~is~~TVyR~L~~L~~~Glv~~~~~~~ 75 (83)
T 2fu4_A 20 LKILEVLQEPD--NHHVSAEDLYKR---LIDMGEEIGLATVYRVLNQFDDAGIVTRHNFEG 75 (83)
T ss_dssp HHHHHHHTSGG--GSSBCHHHHHHH---HHHTTCCCCHHHHHHHHHHHHHHTSEEEEECGG
T ss_pred HHHHHHHHhCC--CCCCCHHHHHHH---HHHhCCCCCHhhHHHHHHHHHHCCCeEEEeeCC
Confidence 46788887653 123566666543 122446899999999999999999998886543
No 31
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=48.81 E-value=31 Score=22.17 Aligned_cols=52 Identities=13% Similarity=0.186 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhcCC-CCceE-EeeeeccCCCcCCccccCCCHHHHHHHHHHHHhcCceeEE
Q 038657 39 DWADIILGFVKDNGL-EDSVM-TVEEIRLGIESRGTELHGMDRTILMRALKLLEHKGKVAIF 98 (112)
Q Consensus 39 eWa~~Iy~Wv~~tG~-~~tV~-TlyEL~~Gd~t~~~ef~gmd~~vL~kaL~~L~k~gkAql~ 98 (112)
+-++.|.+.+.+... -|+-+ |.-||+ +-+|+...-+++||+.|+++|-....
T Consensus 13 ~i~~~i~~~I~~g~~~~G~~lPs~~~La--------~~~~vSr~tvr~al~~L~~~Gli~~~ 66 (113)
T 3tqn_A 13 QLRDKIVEAIIDGSYVEGEMIPSIRKIS--------TEYQINPLTVSKAYQSLLDDNVIEKR 66 (113)
T ss_dssp HHHHHHHHHHHHTSSCTTCEECCHHHHH--------HHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHcCCCCCCCcCcCHHHHH--------HHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 345555555555443 35555 555555 45899999999999999999987766
No 32
>3htu_A Vacuolar protein-sorting-associated protein 25; ESCRT-II, ESCRT-III, VPS20, VPS25, MVB, cytoplasm, nucleus, polymorphism, protein transport; 2.00A {Homo sapiens}
Probab=48.58 E-value=16 Score=23.30 Aligned_cols=23 Identities=30% Similarity=0.312 Sum_probs=20.2
Q ss_pred CCHHHHHHHHHHHHhcCCeeEec
Q 038657 2 LNNEARETFLSALVSEGRAEWLD 24 (112)
Q Consensus 2 Ls~e~~~~Il~~lv~~g~aew~d 24 (112)
++++.++..|..|+++|+|+=..
T Consensus 47 md~~~L~kaL~~L~k~gkA~i~~ 69 (79)
T 3htu_A 47 LDEATLLRALQALQQEHKAEIIT 69 (79)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCHHHHHHHHHHHHHcCCEEEEe
Confidence 68889999999999999998664
No 33
>3qu3_A IRF-7, interferon regulatory factor 7; helix-turn-helix, gene regulation, DNA binding protein; 1.30A {Mus musculus} SCOP: a.4.5.0
Probab=48.49 E-value=21 Score=25.08 Aligned_cols=47 Identities=21% Similarity=0.406 Sum_probs=36.0
Q ss_pred HHHHHHHHhcCC---eeEecCCCcEEEEEecChH------HHHHHHHHHHHhcCCC
Q 038657 8 ETFLSALVSEGR---AEWLDKGHRKCLILWHRIQ------DWADIILGFVKDNGLE 54 (112)
Q Consensus 8 ~~Il~~lv~~g~---aew~d~~~~~~~I~Wr~~~------eWa~~Iy~Wv~~tG~~ 54 (112)
+.-|-.++.+|+ ..|+|..++.+.|=|+... +=+.+.-.|+.-+|.-
T Consensus 16 rpWL~~qidSg~ypGL~W~d~~kt~FrIPWkHa~r~d~~~~D~~IFkaWA~~tGk~ 71 (137)
T 3qu3_A 16 GDWLLGEVSSGQYEGLQWLNEARTVFRVPWKHFGRRDLDEEDAQIFKAWAVARGRW 71 (137)
T ss_dssp HHHHHHHHHHTCSTTCEESSTTCCEEEEECCCCTTSCCCGGGGHHHHHHHHHTTSS
T ss_pred HHHHHHHhccCCcCCceEecCCCCEEEeeCccCCcCCCchHHHHHHHHHHHHhCCc
Confidence 334455566665 7899999999999997543 4478899999999984
No 34
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=46.93 E-value=3.1 Score=28.75 Aligned_cols=57 Identities=28% Similarity=0.307 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhcCCCCceEEeeeeccCCCcCCccccCCCHHHHHHHHHHHHhcCceeEEec
Q 038657 39 DWADIILGFVKDNGLEDSVMTVEEIRLGIESRGTELHGMDRTILMRALKLLEHKGKVAIFKG 100 (112)
Q Consensus 39 eWa~~Iy~Wv~~tG~~~tV~TlyEL~~Gd~t~~~ef~gmd~~vL~kaL~~L~k~gkAql~~~ 100 (112)
.|.-.|..-+.+ | -++.|||.+-=......+.++.+..|..+|+.|++.|=.+--..
T Consensus 41 ~~~~~IL~~L~~-~----~~~gyeI~~~l~~~~~~~~~is~gtLy~~L~rLE~~GlI~~~~~ 97 (145)
T 1xma_A 41 YVDTIILSLLIE-G----DSYGYEISKNIRIKTDELYVIKETTLYSAFARLEKNGYIKSYYG 97 (145)
T ss_dssp THHHHHHHHHHH-C----CEEHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred cHHHHHHHHHHh-C----CCCHHHHHHHHHHhhCCccCcChhHHHHHHHHHHHCCCEEEEEe
Confidence 355666666654 2 27999987642222234568999999999999999998876644
No 35
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=45.82 E-value=23 Score=23.03 Aligned_cols=52 Identities=13% Similarity=0.229 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhcCCCCceEEeeeeccCCCcCCccccCCCHHHHHHHHHHHHhcCceeEEec
Q 038657 40 WADIILGFVKDNGLEDSVMTVEEIRLGIESRGTELHGMDRTILMRALKLLEHKGKVAIFKG 100 (112)
Q Consensus 40 Wa~~Iy~Wv~~tG~~~tV~TlyEL~~Gd~t~~~ef~gmd~~vL~kaL~~L~k~gkAql~~~ 100 (112)
.|=.|...+.... .+..+|.-||. +-.|+|+..+.|.|+.|++.|=.+-..+
T Consensus 10 ~al~iL~~la~~~-~~~~~s~~ela--------~~~~i~~~~v~~il~~L~~~Glv~~~~g 61 (129)
T 2y75_A 10 YGLTIMIELAKKH-GEGPTSLKSIA--------QTNNLSEHYLEQLVSPLRNAGLVKSIRG 61 (129)
T ss_dssp HHHHHHHHHHHTT-TSCCBCHHHHH--------HHTTSCHHHHHHHHHHHHHTTSEEEC--
T ss_pred HHHHHHHHHHhCC-CCCcCCHHHHH--------HHHCcCHHHHHHHHHHHHHCCceEecCC
Confidence 3444445554432 23445666665 3468999999999999999998665543
No 36
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=43.90 E-value=8.8 Score=25.21 Aligned_cols=43 Identities=19% Similarity=0.222 Sum_probs=31.5
Q ss_pred EEeeeeccCCCcCCccccCCCHHHHHHHHHHHHhcCceeEEec
Q 038657 58 MTVEEIRLGIESRGTELHGMDRTILMRALKLLEHKGKVAIFKG 100 (112)
Q Consensus 58 ~TlyEL~~Gd~t~~~ef~gmd~~vL~kaL~~L~k~gkAql~~~ 100 (112)
++-|||.+-=+.....+.++++..|-.+|+.|+++|=.+--..
T Consensus 26 ~~Gyei~~~l~~~~~~~~~i~~gtly~~L~rLe~~GlI~~~~~ 68 (116)
T 3f8b_A 26 NYVYGIIKQVKEASNGEMELNEATLYTIFKRLEKDGIISSYWG 68 (116)
T ss_dssp BCHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHCCCEEEEee
Confidence 4566766542222334678999999999999999998887643
No 37
>3qu6_A IRF3 protein; helix-turn-helix, gene regulation, DNA binding protein; 2.30A {Homo sapiens} SCOP: a.4.5.23 PDB: 2pi0_A 2o6g_E 1t2k_A
Probab=43.90 E-value=20 Score=24.54 Aligned_cols=47 Identities=19% Similarity=0.394 Sum_probs=34.0
Q ss_pred HHHHHHHHhcCC---eeEecCCCcEEEEEecCh------HHHHHHHHHHHHhcCCC
Q 038657 8 ETFLSALVSEGR---AEWLDKGHRKCLILWHRI------QDWADIILGFVKDNGLE 54 (112)
Q Consensus 8 ~~Il~~lv~~g~---aew~d~~~~~~~I~Wr~~------~eWa~~Iy~Wv~~tG~~ 54 (112)
+.-|-.++.+|+ ..|+|..++.+.|=|+-. ++=+.+.-+|+.-+|.-
T Consensus 12 r~WL~~qidsg~ypGl~W~d~~kt~FrIPWkH~~r~~~~~~D~~IFkaWA~~~Gk~ 67 (116)
T 3qu6_A 12 LPWLVSQLDLGQLEGVAWVNKSRTRFRIPWKHGLRQDAQQEDFGIFQAWAEATGAY 67 (116)
T ss_dssp HHHHHHHHHHTCSTTCEECSTTSCEEEEECCC--------CCCSHHHHHHHHTTSC
T ss_pred HHHHHHHhccCCcCCcEEEcCCCCEEEecCcCCCcCCcchhHHHHHHHHHHhcCcc
Confidence 334455556665 789999999999999843 23355788999999985
No 38
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=43.81 E-value=94 Score=22.84 Aligned_cols=89 Identities=17% Similarity=0.269 Sum_probs=57.9
Q ss_pred CCHHHHHHHHHHHHhcCCeeEecCCCcEEEEEecChHHHHHHHHHHHHh----cCC-CCceEEeeeeccCCCcCCccccC
Q 038657 2 LNNEARETFLSALVSEGRAEWLDKGHRKCLILWHRIQDWADIILGFVKD----NGL-EDSVMTVEEIRLGIESRGTELHG 76 (112)
Q Consensus 2 Ls~e~~~~Il~~lv~~g~aew~d~~~~~~~I~Wr~~~eWa~~Iy~Wv~~----tG~-~~tV~TlyEL~~Gd~t~~~ef~g 76 (112)
++++.+...++.|+..|++.-.+.+....++-=...++|...|.+-+.+ +-. .| +.--||... -|-.
T Consensus 29 l~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~H~~~P~~~G--~~~~~L~~~------~~~~ 100 (258)
T 1lva_A 29 LSLEETRKLLQSMAAAGQVTLLRVENDLYAISTERYQAWWQAVTRALEEFHSRYPLRPG--LAREELRSR------YFSR 100 (258)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHCTTSSC--EEHHHHHHH------HCTT
T ss_pred CCHHHHHHHHHHHHhCCCEEEeccCCccEEEcHHHHHHHHHHHHHHHHHHHHhCCCccC--CCHHHHHHh------cccc
Confidence 5788889999999999997766643223344444556666666666553 222 12 333344322 1234
Q ss_pred CCHHHHHHHHHHHHhcCceeEE
Q 038657 77 MDRTILMRALKLLEHKGKVAIF 98 (112)
Q Consensus 77 md~~vL~kaL~~L~k~gkAql~ 98 (112)
+|+.++...|+.|+++|+.+.-
T Consensus 101 ~~~~l~~~ll~~l~~~g~l~~~ 122 (258)
T 1lva_A 101 LPARVYQALLEEWSREGRLQLA 122 (258)
T ss_dssp SCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHHHHHHHCCCEEec
Confidence 7999999999999999997654
No 39
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=42.93 E-value=22 Score=23.52 Aligned_cols=56 Identities=13% Similarity=0.153 Sum_probs=40.2
Q ss_pred HHHHHHHHhcCCCCceEEeeeeccCCCcCCccccCCCHHHHHHHHHHHHhcCceeEEecCCC
Q 038657 42 DIILGFVKDNGLEDSVMTVEEIRLGIESRGTELHGMDRTILMRALKLLEHKGKVAIFKGTSA 103 (112)
Q Consensus 42 ~~Iy~Wv~~tG~~~tV~TlyEL~~Gd~t~~~ef~gmd~~vL~kaL~~L~k~gkAql~~~~~~ 103 (112)
..|++.+.+++ .-+|.+||.+- ...++.+++..-.-+.|+.|++.|-+.-+...++
T Consensus 14 ~~Il~~l~~~~---~~~sa~ei~~~---l~~~~~~is~~TVYR~L~~L~e~Glv~~~~~~~~ 69 (131)
T 2o03_A 14 AAISTLLETLD---DFRSAQELHDE---LRRRGENIGLTTVYRTLQSMASSGLVDTLHTDTG 69 (131)
T ss_dssp HHHHHHHHHCC---SCEEHHHHHHH---HHHTTCCCCHHHHHHHHHHHHTTTSEEEEECTTS
T ss_pred HHHHHHHHhCC---CCCCHHHHHHH---HHHhCCCCCHhhHHHHHHHHHHCCCEEEEEeCCC
Confidence 45777776543 34666666643 2234568999999999999999999988866543
No 40
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=41.93 E-value=40 Score=21.92 Aligned_cols=30 Identities=17% Similarity=0.219 Sum_probs=26.4
Q ss_pred cccCCCHHHHHHHHHHHHhcCceeEEecCC
Q 038657 73 ELHGMDRTILMRALKLLEHKGKVAIFKGTS 102 (112)
Q Consensus 73 ef~gmd~~vL~kaL~~L~k~gkAql~~~~~ 102 (112)
+.-+||..-|.+.|+.|+++|=.+....++
T Consensus 44 ~~l~l~~stLsR~l~rLe~~GLV~r~~~~D 73 (96)
T 2obp_A 44 KRAQLPMSVLRRVLTQLQAAGLADVSVEAD 73 (96)
T ss_dssp HHHTCCHHHHHHHHHHHHHTTSEEEEECTT
T ss_pred HHhCCchhhHHHHHHHHHHCCCEEeecCCC
Confidence 557899999999999999999999976644
No 41
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=40.32 E-value=21 Score=24.02 Aligned_cols=55 Identities=13% Similarity=0.188 Sum_probs=39.8
Q ss_pred HHHHHHHHhcCCCCceEEeeeeccCCCcCCccccCCCHHHHHHHHHHHHhcCceeEEecCC
Q 038657 42 DIILGFVKDNGLEDSVMTVEEIRLGIESRGTELHGMDRTILMRALKLLEHKGKVAIFKGTS 102 (112)
Q Consensus 42 ~~Iy~Wv~~tG~~~tV~TlyEL~~Gd~t~~~ef~gmd~~vL~kaL~~L~k~gkAql~~~~~ 102 (112)
..|++.+.+++ .-+|.+||.+- ...++.+|+..-.-|.|+.|++.|-+.-+..++
T Consensus 17 ~~Il~~L~~~~---~h~sa~eI~~~---l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~ 71 (139)
T 3mwm_A 17 AAVSAALQEVE---EFRSAQELHDM---LKHKGDAVGLTTVYRTLQSLADAGEVDVLRTAE 71 (139)
T ss_dssp HHHHHHHTTCS---SCEEHHHHHHH---HHHTTCCCCHHHHHHHHHHHHHTTSSEEEECTT
T ss_pred HHHHHHHHhCC---CCCCHHHHHHH---HHHhCCCCCHHHHHHHHHHHHHCCCEEEEEcCC
Confidence 45677776653 25666666543 223456799999999999999999998886654
No 42
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=38.41 E-value=25 Score=20.74 Aligned_cols=43 Identities=19% Similarity=0.312 Sum_probs=32.3
Q ss_pred HHHHHHHHhcCCCCceEEeeeeccCCCcCCccccCCCHHHHHHHHHHHHhcCce
Q 038657 42 DIILGFVKDNGLEDSVMTVEEIRLGIESRGTELHGMDRTILMRALKLLEHKGKV 95 (112)
Q Consensus 42 ~~Iy~Wv~~tG~~~tV~TlyEL~~Gd~t~~~ef~gmd~~vL~kaL~~L~k~gkA 95 (112)
..|.+.+.+++ .-+|+=||. +--|+|...+.+.|+.|++.|-.
T Consensus 13 ~~IL~~L~~~~---~~~s~~eLA--------~~lglsr~tv~~~l~~L~~~G~I 55 (67)
T 2heo_A 13 QKILQVLSDDG---GPVAIFQLV--------KKCQVPKKTLNQVLYRLKKEDRV 55 (67)
T ss_dssp HHHHHHHHHHC---SCEEHHHHH--------HHHCSCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHcC---CCcCHHHHH--------HHHCcCHHHHHHHHHHHHHCCcE
Confidence 35667776543 336666666 45789999999999999999993
No 43
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=38.24 E-value=21 Score=30.03 Aligned_cols=85 Identities=12% Similarity=0.026 Sum_probs=17.3
Q ss_pred CCHHHHHHHHHHHHh-----cCCeeEecC-----C----------CcEEEEE-ec--ChHHHHHHHHHHHHhcCCCCceE
Q 038657 2 LNNEARETFLSALVS-----EGRAEWLDK-----G----------HRKCLIL-WH--RIQDWADIILGFVKDNGLEDSVM 58 (112)
Q Consensus 2 Ls~e~~~~Il~~lv~-----~g~aew~d~-----~----------~~~~~I~-Wr--~~~eWa~~Iy~Wv~~tG~~~tV~ 58 (112)
+|...++.+|..|++ .|-.+-..+ . ....++. -+ .|...-.+|++|+.++|..
T Consensus 456 ~s~~~~~~~L~~L~~~~~~~~glie~~g~~y~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~l~~~g~i---- 531 (583)
T 3lmm_A 456 SGKEAARNALEAARQTTVAGAPLIIAHDGVWLLGNACREILRKVEPSPFSPVRYLSTDQAELTNAAMLWLSEVGDL---- 531 (583)
T ss_dssp SCHHHHHHHHHHHHTCEETTEESEEEETTEEEECHHHHHHHTSCC-----------------------------------
T ss_pred cCHHHHHHHHHHHHhhhccccceEEEeCCEEEECHHHHHHhcccccccccccccccCChhHHHHHHHHHHHHcCCc----
Confidence 678889999999999 455554321 0 0011111 11 2445567899999998772
Q ss_pred EeeeeccCCCcCCccccCCCHHHHHHHHHHHHhcCceeEE
Q 038657 59 TVEEIRLGIESRGTELHGMDRTILMRALKLLEHKGKVAIF 98 (112)
Q Consensus 59 TlyEL~~Gd~t~~~ef~gmd~~vL~kaL~~L~k~gkAql~ 98 (112)
+..| -.+.-|++..-..++|+.|++.|+.+-.
T Consensus 532 -----t~~d---i~~l~~ls~~qa~~~L~~Lv~~G~l~~~ 563 (583)
T 3lmm_A 532 -----ATSD---LMAMCGVSRGTAKACVDGLVDEERVVAV 563 (583)
T ss_dssp ----------------------------------------
T ss_pred -----CHHH---HHHHHCCCHHHHHHHHHHHHHCCcEEEe
Confidence 2222 1244558888889999999999996554
No 44
>3fyr_A Sporulation inhibitor SDA; helical hairpin, histidine kinase inhibitor, sporulation regulation, alternative initiation; 1.97A {Bacillus subtilis} SCOP: a.2.12.1 PDB: 1pv0_A 3d36_C*
Probab=37.39 E-value=17 Score=21.31 Aligned_cols=18 Identities=17% Similarity=0.189 Sum_probs=16.0
Q ss_pred CCCHHHHHHHHHHHHhcC
Q 038657 1 SLNNEARETFLSALVSEG 18 (112)
Q Consensus 1 ~Ls~e~~~~Il~~lv~~g 18 (112)
.|+++||+.+.++|.++|
T Consensus 22 ~L~~dFI~LL~~Ei~RR~ 39 (48)
T 3fyr_A 22 NLNRDFIELIENEIKRRS 39 (48)
T ss_dssp TCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcC
Confidence 489999999999999875
No 45
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=36.43 E-value=32 Score=21.37 Aligned_cols=44 Identities=18% Similarity=0.248 Sum_probs=32.5
Q ss_pred HHHHHHHhcCCCCceEEeeeeccCCCcCCccccCCCHHHHHHHHHHHHhcCceeEE
Q 038657 43 IILGFVKDNGLEDSVMTVEEIRLGIESRGTELHGMDRTILMRALKLLEHKGKVAIF 98 (112)
Q Consensus 43 ~Iy~Wv~~tG~~~tV~TlyEL~~Gd~t~~~ef~gmd~~vL~kaL~~L~k~gkAql~ 98 (112)
.|.+.+.+.|. +|+-||. +-.++++..+++-|+.|+++|+..=.
T Consensus 6 ~Il~~L~~~g~----vsv~eLa--------~~l~VS~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 6 QVRDLLALRGR----MEAAQIS--------QTLNTPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHHSCS----BCHHHHH--------HHTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHcCC----CcHHHHH--------HHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 45566666553 3444554 34589999999999999999998777
No 46
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=36.39 E-value=46 Score=23.13 Aligned_cols=39 Identities=15% Similarity=0.284 Sum_probs=30.4
Q ss_pred ceEEeeeeccCCCcCCccccCCCHHHHHHHHHHHHhcCceeEEecCC
Q 038657 56 SVMTVEEIRLGIESRGTELHGMDRTILMRALKLLEHKGKVAIFKGTS 102 (112)
Q Consensus 56 tV~TlyEL~~Gd~t~~~ef~gmd~~vL~kaL~~L~k~gkAql~~~~~ 102 (112)
..+|.-||. +-.++|+..|+|.|..|.+.|=.+-..|.+
T Consensus 43 ~~~s~~eIA--------~~~~i~~~~l~kil~~L~~aGlv~s~rG~~ 81 (159)
T 3lwf_A 43 GPISLRSIA--------QDKNLSEHYLEQLIGPLRNAGIVKSIRGAH 81 (159)
T ss_dssp CCBCHHHHH--------HHHTCCHHHHHHHHHHHHHTTSEEEECSTT
T ss_pred CCcCHHHHH--------HHHCcCHHHHHHHHHHHHHCCeEEEecCCC
Confidence 345666665 457899999999999999999877776554
No 47
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=35.06 E-value=38 Score=22.73 Aligned_cols=56 Identities=14% Similarity=0.183 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcCCCCceEEeeeeccCCCcCCccccCCCHHHHHHHHHHHHhcCceeEEecCC
Q 038657 41 ADIILGFVKDNGLEDSVMTVEEIRLGIESRGTELHGMDRTILMRALKLLEHKGKVAIFKGTS 102 (112)
Q Consensus 41 a~~Iy~Wv~~tG~~~tV~TlyEL~~Gd~t~~~ef~gmd~~vL~kaL~~L~k~gkAql~~~~~ 102 (112)
-..|++.+.+++. -+|.+||.+- ...++.+++..-.-+.|+.|++.|-+.-+..++
T Consensus 24 R~~Il~~L~~~~~---~~sa~ei~~~---l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~ 79 (145)
T 2fe3_A 24 RHAILEYLVNSMA---HPTADDIYKA---LEGKFPNMSVATVYNNLRVFRESGLVKELTYGD 79 (145)
T ss_dssp HHHHHHHHHHCSS---CCCHHHHHHH---HGGGCTTCCHHHHHHHHHHHHHTTSEEEECCTT
T ss_pred HHHHHHHHHhCCC---CCCHHHHHHH---HHHhCCCCChhhHHHHHHHHHHCCCEEEEeeCC
Confidence 3568888877543 4555555543 233456899999999999999999999886554
No 48
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=34.80 E-value=32 Score=21.92 Aligned_cols=39 Identities=21% Similarity=0.245 Sum_probs=30.3
Q ss_pred EEeeeeccCCCcCCccccCCCHHHHHHHHHHHHhcCceeEEec
Q 038657 58 MTVEEIRLGIESRGTELHGMDRTILMRALKLLEHKGKVAIFKG 100 (112)
Q Consensus 58 ~TlyEL~~Gd~t~~~ef~gmd~~vL~kaL~~L~k~gkAql~~~ 100 (112)
++.|||.+-= .++.++++..+-.+|+.|++.|=.+--..
T Consensus 23 ~~gyel~~~l----~~~~~i~~~tly~~L~~Le~~GlI~~~~~ 61 (108)
T 3l7w_A 23 SYGYDISQTI----KLIASIKESTLYPILKKLEKAGYLSTYTQ 61 (108)
T ss_dssp EEHHHHHHHH----TTTCCCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CcHHHHHHHH----HHHhCCCcChHHHHHHHHHHCCCeEEEee
Confidence 6777776531 12678999999999999999998877644
No 49
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=34.19 E-value=33 Score=21.84 Aligned_cols=51 Identities=14% Similarity=0.063 Sum_probs=42.7
Q ss_pred cChHHHHHHHHHHHHhcCCCCceEEeeeeccCCCcCCccccCCCHHHHHHHHHHHHhcCceeEE
Q 038657 35 HRIQDWADIILGFVKDNGLEDSVMTVEEIRLGIESRGTELHGMDRTILMRALKLLEHKGKVAIF 98 (112)
Q Consensus 35 r~~~eWa~~Iy~Wv~~tG~~~tV~TlyEL~~Gd~t~~~ef~gmd~~vL~kaL~~L~k~gkAql~ 98 (112)
....+=+..|.+.+..+| .|+.||.. --|++..-.++-|..|++.|-.+-.
T Consensus 13 ~~~~~~~~~IL~lL~~~g-----~sa~eLAk--------~LgiSk~aVr~~L~~Le~eG~I~~~ 63 (82)
T 1oyi_A 13 RSNAEIVCEAIKTIGIEG-----ATAAQLTR--------QLNMEKREVNKALYDLQRSAMVYSS 63 (82)
T ss_dssp CCSHHHHHHHHHHHSSST-----EEHHHHHH--------HSSSCHHHHHHHHHHHHHHTSSEEC
T ss_pred cchHHHHHHHHHHHHHcC-----CCHHHHHH--------HHCcCHHHHHHHHHHHHHCCCEEeC
Confidence 355677888999999776 99999984 3679999999999999999988765
No 50
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=34.11 E-value=36 Score=22.29 Aligned_cols=54 Identities=17% Similarity=0.212 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHhcCC-CCceE-EeeeeccCCCcCCccccCCCHHHHHHHHHHHHhcCceeEEec
Q 038657 39 DWADIILGFVKDNGL-EDSVM-TVEEIRLGIESRGTELHGMDRTILMRALKLLEHKGKVAIFKG 100 (112)
Q Consensus 39 eWa~~Iy~Wv~~tG~-~~tV~-TlyEL~~Gd~t~~~ef~gmd~~vL~kaL~~L~k~gkAql~~~ 100 (112)
+-.+.|.+.+.+... -|+-+ |.-||+ +-+|+...-+++||+.|+++|-.....+
T Consensus 17 ~i~~~i~~~I~~g~~~~g~~Lps~~~La--------~~~~vSr~tvr~Al~~L~~~G~i~~~~g 72 (125)
T 3neu_A 17 QISDWMKKQMITGEWKGEDKLPSVREMG--------VKLAVNPNTVSRAYQELERAGYIYAKRG 72 (125)
T ss_dssp HHHHHHHHHHHTTSSCTTCBCCCHHHHH--------HHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHHHHHhCCCCCCCCCCCHHHHH--------HHHCcCHHHHHHHHHHHHHCCeEEEecC
Confidence 334455555554333 24444 344444 4589999999999999999998877743
No 51
>1u5t_B Defective in vacuolar protein sorting; VPS36P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=34.04 E-value=69 Score=22.67 Aligned_cols=63 Identities=22% Similarity=0.227 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHH---h--cCCCCc-eEEeeeeccCCC-c-C-CccccCCCHHHHHHHHHHHHhcCce--eEEecCC
Q 038657 38 QDWADIILGFVK---D--NGLEDS-VMTVEEIRLGIE-S-R-GTELHGMDRTILMRALKLLEHKGKV--AIFKGTS 102 (112)
Q Consensus 38 ~eWa~~Iy~Wv~---~--tG~~~t-V~TlyEL~~Gd~-t-~-~~ef~gmd~~vL~kaL~~L~k~gkA--ql~~~~~ 102 (112)
.|-|-.|++|.. . ....|- ++||-||.+-=. . + +. --+.|+=|.+|++.|++-|.. .+++.++
T Consensus 14 ~ELa~qi~e~c~~~~~~~~~~~GG~~I~L~dl~~~~nra~R~g~--~lISp~Dl~~A~~~l~~Lg~~~~~l~~~~s 87 (169)
T 1u5t_B 14 DEIAREIYEFTLSEFKDLNSDTNYMIITLVDLYAMYNKSMRIGT--GLISPMEMREACERFEHLGLNELKLVKVNK 87 (169)
T ss_dssp HHHHHHHHHHHHTTTTTSSSCCCCCCEETTHHHHHHHHTTTSSS--CCCCHHHHHHHHTTTGGGTCCSCEEEEETT
T ss_pred HHHHHHHHHHHhhcchhhHHhcCceeEEHHHHHHHHHHhhcCCC--CccCHHHHHHHHHHHHhcCCCeEEEEEECC
Confidence 578889999998 3 345677 999888865311 1 1 22 268899999999999998877 7776654
No 52
>1ro7_A Alpha-2,3/8-sialyltransferase; mixed alpha/beta, rossmann fold; HET: CSF; 1.80A {Campylobacter jejuni} SCOP: c.130.1.1 PDB: 1ro8_A* 2drj_A* 2x62_A* 2x61_A* 2x63_A*
Probab=33.98 E-value=16 Score=27.58 Aligned_cols=29 Identities=24% Similarity=0.290 Sum_probs=24.1
Q ss_pred ccccCCCHHHHHHHHHHHHhcCceeEEecCC
Q 038657 72 TELHGMDRTILMRALKLLEHKGKVAIFKGTS 102 (112)
Q Consensus 72 ~ef~gmd~~vL~kaL~~L~k~gkAql~~~~~ 102 (112)
..+|.||.+. +||+.|.++|.++|+.-..
T Consensus 185 ~~~H~m~~Ef--~al~~Lh~~g~v~I~nls~ 213 (259)
T 1ro7_A 185 YIGHSKNTDI--KALEFLEKTYKIKLYCLCP 213 (259)
T ss_dssp CTTCCHHHHH--HHHHHHHHHHTCEEEESCT
T ss_pred ccccCchHHH--HHHHHHHHhCCeEEEECCC
Confidence 4578888877 8999999999999997543
No 53
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=33.23 E-value=38 Score=22.31 Aligned_cols=52 Identities=19% Similarity=0.199 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhcCC-CCceE-EeeeeccCCCcCCccccCCCHHHHHHHHHHHHhcCceeEEe
Q 038657 40 WADIILGFVKDNGL-EDSVM-TVEEIRLGIESRGTELHGMDRTILMRALKLLEHKGKVAIFK 99 (112)
Q Consensus 40 Wa~~Iy~Wv~~tG~-~~tV~-TlyEL~~Gd~t~~~ef~gmd~~vL~kaL~~L~k~gkAql~~ 99 (112)
-++.|.+.+.+... -|+-+ +.-||+ +-+|+...-+++||+.|+..|-.....
T Consensus 16 i~~~l~~~I~~g~~~~G~~lPse~~La--------~~~~vSr~tvr~Al~~L~~~Gli~~~~ 69 (126)
T 3by6_A 16 LVDRIKNEVATDVLSANDQLPSVRETA--------LQEKINPNTVAKAYKELEAQKVIRTIP 69 (126)
T ss_dssp HHHHHHHHHHTTSSCTTCEECCHHHHH--------HHHTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHHHhCCCCCCCcCcCHHHHH--------HHHCcCHHHHHHHHHHHHHCCCEEEec
Confidence 34444444444332 35555 666665 457899999999999999999887763
No 54
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=33.09 E-value=75 Score=18.67 Aligned_cols=26 Identities=19% Similarity=0.336 Sum_probs=21.8
Q ss_pred CCHHHHHHHHHHHHhcCCeeEecCCC
Q 038657 2 LNNEARETFLSALVSEGRAEWLDKGH 27 (112)
Q Consensus 2 Ls~e~~~~Il~~lv~~g~aew~d~~~ 27 (112)
+++..+..+++.|+++|-+.-...++
T Consensus 39 ~s~~Tv~~~l~rL~~kGlv~r~~~gr 64 (82)
T 1p6r_A 39 WSPKTIQTMLLRLIKKGALNHHKEGR 64 (82)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEEEETT
T ss_pred ccHHHHHHHHHHHHHCCCeEEEecCC
Confidence 57889999999999999988765544
No 55
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=32.66 E-value=40 Score=22.41 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=23.6
Q ss_pred cccCCCHHHHHHHHHHHHhcCceeEEe
Q 038657 73 ELHGMDRTILMRALKLLEHKGKVAIFK 99 (112)
Q Consensus 73 ef~gmd~~vL~kaL~~L~k~gkAql~~ 99 (112)
+-+|+...-+++||+.|+.+|-.....
T Consensus 36 ~~~gvSr~tVr~Al~~L~~~Gli~~~~ 62 (129)
T 2ek5_A 36 AFHRINPATARNGLTLLVEAGILYKKR 62 (129)
T ss_dssp HHTTCCHHHHHHHHHHHHTTTSEEEET
T ss_pred HHHCcCHHHHHHHHHHHHHCCcEEEec
Confidence 457999999999999999999877763
No 56
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=32.26 E-value=44 Score=22.49 Aligned_cols=53 Identities=11% Similarity=0.227 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhcCCCCceEEeeeeccCCCcCCccccCCCHHHHHHHHHHHHhcCceeEEecC
Q 038657 40 WADIILGFVKDNGLEDSVMTVEEIRLGIESRGTELHGMDRTILMRALKLLEHKGKVAIFKGT 101 (112)
Q Consensus 40 Wa~~Iy~Wv~~tG~~~tV~TlyEL~~Gd~t~~~ef~gmd~~vL~kaL~~L~k~gkAql~~~~ 101 (112)
.|=.+.-.+-... .+..+|.-||. +-.|+|+..|.|.|..|.+.|=.+-..+.
T Consensus 12 yAl~~L~~La~~~-~~~~~s~~~IA--------~~~~i~~~~l~kil~~L~~aGlv~s~rG~ 64 (143)
T 3t8r_A 12 YGLTLMISLAKKE-GQGCISLKSIA--------EENNLSDLYLEQLVGPLRNAGLIRSVRGA 64 (143)
T ss_dssp HHHHHHHHHHTTT-TSCCEEHHHHH--------HHTTCCHHHHHHHHHHHHHTTSEEECSSS
T ss_pred HHHHHHHHHHhCC-CCCCcCHHHHH--------HHHCcCHHHHHHHHHHHHHCCEEEecCCC
Confidence 3434444444321 23456777776 45789999999999999999976555443
No 57
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=32.24 E-value=31 Score=22.59 Aligned_cols=23 Identities=17% Similarity=0.286 Sum_probs=21.3
Q ss_pred ccCCCHHHHHHHHHHHHhcCcee
Q 038657 74 LHGMDRTILMRALKLLEHKGKVA 96 (112)
Q Consensus 74 f~gmd~~vL~kaL~~L~k~gkAq 96 (112)
.-+||...+-+.++.|+++|=.+
T Consensus 40 ~l~~drstvsrnl~~L~r~GlVe 62 (95)
T 1bja_A 40 HPDLGNAVVNSNIGVLIKKGLVE 62 (95)
T ss_dssp CTTSCHHHHHHHHHHHHTTTSEE
T ss_pred HhcccHHHHHHHHHHHHHCCCee
Confidence 56799999999999999999888
No 58
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=32.06 E-value=26 Score=22.90 Aligned_cols=41 Identities=5% Similarity=-0.056 Sum_probs=31.7
Q ss_pred EEeeeeccCCCcCCccccCCCHHHHHHHHHHHHhcCceeEEec
Q 038657 58 MTVEEIRLGIESRGTELHGMDRTILMRALKLLEHKGKVAIFKG 100 (112)
Q Consensus 58 ~TlyEL~~Gd~t~~~ef~gmd~~vL~kaL~~L~k~gkAql~~~ 100 (112)
++.|||.+-=.. ..|.++.+..|-.+|+.|++.|=.+--..
T Consensus 23 ~~Gyei~~~l~~--~~~~~is~gtlY~~L~rLe~~GlI~~~~~ 63 (115)
T 4esb_A 23 VYGYELSTKLNK--HGFTFVSEGSIYPLLLRMQKEKLIEGTLK 63 (115)
T ss_dssp EEHHHHHHHHHH--TTCTTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCHHHHHHHHHH--cCCCCCCcChHHHHHHHHHHCCCeEEEee
Confidence 677888764222 24778999999999999999998876643
No 59
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=31.61 E-value=35 Score=21.41 Aligned_cols=52 Identities=19% Similarity=0.370 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhcCCCCceEEeeeeccCCCcCCccccCCCHHHHHHHHHHHHhcCceeEEecC
Q 038657 38 QDWADIILGFVKDNGLEDSVMTVEEIRLGIESRGTELHGMDRTILMRALKLLEHKGKVAIFKGT 101 (112)
Q Consensus 38 ~eWa~~Iy~Wv~~tG~~~tV~TlyEL~~Gd~t~~~ef~gmd~~vL~kaL~~L~k~gkAql~~~~ 101 (112)
..|.-.|...+. .| -+|+.||.+ .+.|+++..+.+.|+.|++.|=.+-....
T Consensus 24 ~~~~~~IL~~L~-~~----~~~~~eL~~-------~l~gis~~~ls~~L~~Le~~GlV~r~~~~ 75 (107)
T 2fsw_A 24 GKWTLLIIFQIN-RR----IIRYGELKR-------AIPGISEKMLIDELKFLCGKGLIKKKQYP 75 (107)
T ss_dssp SSSHHHHHHHHT-TS----CEEHHHHHH-------HSTTCCHHHHHHHHHHHHHTTSEEEEEEC
T ss_pred CccHHHHHHHHH-hC----CcCHHHHHH-------HcccCCHHHHHHHHHHHHHCCCEEEeecC
Confidence 345555666554 22 367777764 33479999999999999999988765443
No 60
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=30.84 E-value=29 Score=23.38 Aligned_cols=51 Identities=24% Similarity=0.340 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhcCCCCceEEeeeeccCCCcCCccccCCCHHHHHHHHHHHHhcCceeEEec
Q 038657 40 WADIILGFVKDNGLEDSVMTVEEIRLGIESRGTELHGMDRTILMRALKLLEHKGKVAIFKG 100 (112)
Q Consensus 40 Wa~~Iy~Wv~~tG~~~tV~TlyEL~~Gd~t~~~ef~gmd~~vL~kaL~~L~k~gkAql~~~ 100 (112)
.|=.+.-.+... .+..+|.-||. +-.++|+..+.|.+..|.+.|=.+-..+
T Consensus 15 yAl~~L~~La~~--~~~~~~~~~iA--------~~~~i~~~~l~kil~~L~~~Glv~s~rG 65 (149)
T 1ylf_A 15 IAVHILSILKNN--PSSLCTSDYMA--------ESVNTNPVVIRKIMSYLKQAGFVYVNRG 65 (149)
T ss_dssp HHHHHHHHHHHS--CGGGCCHHHHH--------HHHTSCHHHHHHHHHHHHHTTSEEEC--
T ss_pred HHHHHHHHHHhC--CCCCcCHHHHH--------HHHCcCHHHHHHHHHHHHHCCcEEEccC
Confidence 344444444432 23455666665 4589999999999999999997665544
No 61
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=30.41 E-value=40 Score=20.30 Aligned_cols=21 Identities=24% Similarity=0.302 Sum_probs=16.9
Q ss_pred cCCCHHHHHHHHHHHHhcCce
Q 038657 75 HGMDRTILMRALKLLEHKGKV 95 (112)
Q Consensus 75 ~gmd~~vL~kaL~~L~k~gkA 95 (112)
+++|++++..||+.-+..||-
T Consensus 33 ~~~~~elI~~A~~~a~~~~~~ 53 (78)
T 2zc2_A 33 DKTDPDLVRSALREAVFNGKT 53 (78)
T ss_dssp TCCCHHHHHHHHHHHHHHTCC
T ss_pred hCCCHHHHHHHHHHHHHcCCC
Confidence 468999999999876666653
No 62
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=30.38 E-value=31 Score=26.44 Aligned_cols=56 Identities=25% Similarity=0.354 Sum_probs=44.1
Q ss_pred cChHHHHHHHHHHHHhcCCCCceEEeeeeccCCCcCCc---cccCCCHHHHHHHHHHHHhcCceeEE
Q 038657 35 HRIQDWADIILGFVKDNGLEDSVMTVEEIRLGIESRGT---ELHGMDRTILMRALKLLEHKGKVAIF 98 (112)
Q Consensus 35 r~~~eWa~~Iy~Wv~~tG~~~tV~TlyEL~~Gd~t~~~---ef~gmd~~vL~kaL~~L~k~gkAql~ 98 (112)
...++=|+.|++..+++| | .|+| +|-+.++ +-.||...-++|||-.|-|+||..+-
T Consensus 220 ~~~~~~a~~il~~L~~~~--G-~l~~-----~DkS~pe~I~~~f~~SK~~FKrAiG~L~K~~~I~~~ 278 (285)
T 3go5_A 220 EMLENDAQMILTYLESNG--G-FMTL-----NDKSSPDDIKATFGISKGQFKKALGGLMKAGKIKQD 278 (285)
T ss_dssp CCCCHHHHHHHHHHHHTT--T-EESC-----CTTSCHHHHHHHHSSCHHHHHHHHHHHHHTTCEEEE
T ss_pred hccchHHHHHHHHHHhcC--C-eecc-----CCCCCHHHHHHHhCcCHHHHHHHHHHHhhCCcEEEc
Confidence 456788999999999875 2 5555 4444443 34599999999999999999999886
No 63
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=29.96 E-value=46 Score=21.87 Aligned_cols=55 Identities=20% Similarity=0.265 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHhcCC-CCceE-EeeeeccCCCcCCccccCCCHHHHHHHHHHHHhcCceeEEec
Q 038657 38 QDWADIILGFVKDNGL-EDSVM-TVEEIRLGIESRGTELHGMDRTILMRALKLLEHKGKVAIFKG 100 (112)
Q Consensus 38 ~eWa~~Iy~Wv~~tG~-~~tV~-TlyEL~~Gd~t~~~ef~gmd~~vL~kaL~~L~k~gkAql~~~ 100 (112)
++-++.|.+.+.+.-. -|+-+ +.-||+ +-+|+...-.++||+.|+.+|=.....+
T Consensus 17 ~QI~~~i~~~I~~G~l~pG~~LPser~La--------~~~gVSr~tVReAl~~L~~eGlv~~~~g 73 (134)
T 4ham_A 17 EQIVQKIKEQVVKGVLQEGEKILSIREFA--------SRIGVNPNTVSKAYQELERQEVIITVKG 73 (134)
T ss_dssp HHHHHHHHHHHHHTSSCTTCEECCHHHHH--------HHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHHHHHHcCCCCCCCCCccHHHHH--------HHHCCCHHHHHHHHHHHHHCCcEEEEcC
Confidence 4445555555554332 33433 333333 4589999999999999999998887744
No 64
>1rii_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; phosphoglyerate mutase, SH3 domain binding, structural genom TBSGC; 1.70A {Mycobacterium tuberculosis} SCOP: c.60.1.1
Probab=29.82 E-value=51 Score=24.23 Aligned_cols=47 Identities=4% Similarity=-0.046 Sum_probs=27.3
Q ss_pred cCCCCceEEeeeeccCCCcCCc-cccCCCHHHHHHHHHHHHhcCceeEE
Q 038657 51 NGLEDSVMTVEEIRLGIESRGT-ELHGMDRTILMRALKLLEHKGKVAIF 98 (112)
Q Consensus 51 tG~~~tV~TlyEL~~Gd~t~~~-ef~gmd~~vL~kaL~~L~k~gkAql~ 98 (112)
...-|..+|+||+..+=..... ..|. |++.+.+++.....|||+++=
T Consensus 205 ~~i~~~~~~~~~~~~~~~~i~~~~~yl-d~~~~~~~~~~~~~~~~~~~~ 252 (265)
T 1rii_A 205 LNIPTGIPLRYDLDSAMRPLVRGGTYL-DPEAAAAGAAAVAGQGRGGVP 252 (265)
T ss_dssp CCCCSSCCEEEEBCTTSCBSSTTCEES-SHHHHHHHHHHCC--------
T ss_pred cCCCCCeEEEEEECCCccccccccccC-CHHHHHHHHHHHHhhhhhcCc
Confidence 3456777889998754222221 1666 999999999999999998654
No 65
>2zfw_A PEX; five alpha-helices + one beta-sheet, circadian clock protein; 2.90A {Synechococcus SP}
Probab=29.77 E-value=6.7 Score=27.41 Aligned_cols=43 Identities=21% Similarity=0.152 Sum_probs=31.9
Q ss_pred eEEeeeeccCCCcCCccccCCCHHHHHHHHHHHHhcCceeEEec
Q 038657 57 VMTVEEIRLGIESRGTELHGMDRTILMRALKLLEHKGKVAIFKG 100 (112)
Q Consensus 57 V~TlyEL~~Gd~t~~~ef~gmd~~vL~kaL~~L~k~gkAql~~~ 100 (112)
-++.|||.+-=.... .|.++.+..|-.+|+.|+++|=.+....
T Consensus 57 p~~GYeI~k~l~~~~-~~~~is~gtLYp~L~rLE~~GlI~~~~~ 99 (148)
T 2zfw_A 57 DSYGTELIQHLETHW-PNYRLSDTVLYTALKFLEDEQIISGYWK 99 (148)
T ss_dssp CEEHHHHHHHHHHHC-TTEECCSHHHHHHHHHHHHTSSEEEECC
T ss_pred CCcHHHHHHHHHHHc-CCCCCChhHHHHHHHHHHHCCCEEEEee
Confidence 367777765322222 4778999999999999999998887643
No 66
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=29.76 E-value=32 Score=24.02 Aligned_cols=91 Identities=19% Similarity=0.165 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHhcCCe---eEecCCCcEEE--EEecChHHHHHHHHHHHHh---cCCCCceEEeeeecc---C---CCc
Q 038657 4 NEARETFLSALVSEGRA---EWLDKGHRKCL--ILWHRIQDWADIILGFVKD---NGLEDSVMTVEEIRL---G---IES 69 (112)
Q Consensus 4 ~e~~~~Il~~lv~~g~a---ew~d~~~~~~~--I~Wr~~~eWa~~Iy~Wv~~---tG~~~tV~TlyEL~~---G---d~t 69 (112)
.+++..+-++|.++|+. +|.|--|+... .--..++-|...+++.+.. +|..|. -+|++ | -.+
T Consensus 10 ~~~i~~~a~~lk~~~ki~~P~w~~~vKt~~~ke~~p~~~~~~y~ria~~lr~~i~~g~~G~----~~La~~~gg~k~~g~ 85 (150)
T 2v7f_A 10 DLLVERVAQRLKEIPEIKPPEWAPFVKTGRHKERLPEQEDWWYYRVASILRRVYLDGPVGI----ERLRTYYGGRKNRGH 85 (150)
T ss_dssp HHHHHHHHHHHTTCTTCCCCSCGGGCCC------CHHHHTHHHHHHHHHHHHHHHHCSBCH----HHHHHHHCC----CC
T ss_pred HHHHHHHHHHHHhcCCCCCcchhhhhcccccccCCCCCcchHHHHHHHHHHHHHHhCCCCH----HHHHHHHCCCccCCc
Confidence 46788888899888864 57665332111 1111234444555554433 345443 23322 1 224
Q ss_pred CCccccCCCHHHHHHHHHHHHhcCceeEE
Q 038657 70 RGTELHGMDRTILMRALKLLEHKGKVAIF 98 (112)
Q Consensus 70 ~~~ef~gmd~~vL~kaL~~L~k~gkAql~ 98 (112)
.+..|.......+++||+.|++.|=.+..
T Consensus 86 ~p~~~~~vSr~tVR~AL~~Le~~GlV~~~ 114 (150)
T 2v7f_A 86 APERFYKAGGSIIRKALQQLEAAGFVEKV 114 (150)
T ss_dssp CTTSCCCHHHHHHHHHHHHHHHTTSEEEE
T ss_pred CCccccccchHHHHHHHHHHHHCCCEEEe
Confidence 55566669999999999999999988776
No 67
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=29.70 E-value=84 Score=19.59 Aligned_cols=25 Identities=28% Similarity=0.616 Sum_probs=21.1
Q ss_pred CCHHHHHHHHHHHHhcCCeeEecCC
Q 038657 2 LNNEARETFLSALVSEGRAEWLDKG 26 (112)
Q Consensus 2 Ls~e~~~~Il~~lv~~g~aew~d~~ 26 (112)
.+++..+++|+.||+.|+.+..+.+
T Consensus 45 it~~eL~~fL~~~v~e~kL~~~~gG 69 (74)
T 1ldd_A 45 ITLQQLEGYLNTLADEGRLKYIANG 69 (74)
T ss_dssp CCHHHHHHHHHHHHHTTSEECCTTT
T ss_pred CCHHHHHHHHHHHHhCCeEEEeCCC
Confidence 4679999999999999999975444
No 68
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=29.70 E-value=41 Score=20.07 Aligned_cols=48 Identities=23% Similarity=0.189 Sum_probs=35.9
Q ss_pred HHHHHHHHhcCCCCceEEeeeeccCCCcCCccccCCCHHHHHHHHHHHHhcCceeEEecC
Q 038657 42 DIILGFVKDNGLEDSVMTVEEIRLGIESRGTELHGMDRTILMRALKLLEHKGKVAIFKGT 101 (112)
Q Consensus 42 ~~Iy~Wv~~tG~~~tV~TlyEL~~Gd~t~~~ef~gmd~~vL~kaL~~L~k~gkAql~~~~ 101 (112)
-.|+..+...|. +|+.||. +.-|++.+-+.+.|+.|++.|=.+-....
T Consensus 23 ~~il~~l~~~~~----~s~~ela--------~~l~is~~tv~~~l~~L~~~glv~~~~~~ 70 (109)
T 1sfx_A 23 VRIYSLLLERGG----MRVSEIA--------RELDLSARFVRDRLKVLLKRGFVRREIVE 70 (109)
T ss_dssp HHHHHHHHHHCC----BCHHHHH--------HHHTCCHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred HHHHHHHHHcCC----CCHHHHH--------HHHCCCHHHHHHHHHHHHHCCCEEEEeec
Confidence 346666766543 5677775 34589999999999999999988776543
No 69
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=29.68 E-value=41 Score=20.14 Aligned_cols=35 Identities=29% Similarity=0.354 Sum_probs=29.1
Q ss_pred EEeeeeccCCCcCCccccCCCHHHHHHHHHHHHhcCceeEEec
Q 038657 58 MTVEEIRLGIESRGTELHGMDRTILMRALKLLEHKGKVAIFKG 100 (112)
Q Consensus 58 ~TlyEL~~Gd~t~~~ef~gmd~~vL~kaL~~L~k~gkAql~~~ 100 (112)
+|.-||. +--|++.+-+.+.|+.|+++|-.+-...
T Consensus 37 ~t~~ela--------~~l~is~~tv~~~l~~L~~~g~v~~~~~ 71 (109)
T 2d1h_A 37 ITSEELA--------DIFKLSKTTVENSLKKLIELGLVVRTKT 71 (109)
T ss_dssp EEHHHHH--------HHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred CCHHHHH--------HHHCcCHHHHHHHHHHHHHCCCeEeecc
Confidence 6777776 3468999999999999999999887754
No 70
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=29.45 E-value=32 Score=23.06 Aligned_cols=28 Identities=14% Similarity=0.249 Sum_probs=23.6
Q ss_pred cccCCCHHHHHHHHHHHHhcCceeEEec
Q 038657 73 ELHGMDRTILMRALKLLEHKGKVAIFKG 100 (112)
Q Consensus 73 ef~gmd~~vL~kaL~~L~k~gkAql~~~ 100 (112)
+-.++|+..|.|.|..|.+.|=.+-..+
T Consensus 31 ~~~~i~~~~l~kIl~~L~~aGlv~s~rG 58 (145)
T 1xd7_A 31 DSVNTNPVVVRRMISLLKKADILTSRAG 58 (145)
T ss_dssp HHHTSCHHHHHHHHHHHHHTTSEECCSS
T ss_pred HHHCcCHHHHHHHHHHHHHCCceEeecC
Confidence 5589999999999999999997665544
No 71
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=29.44 E-value=75 Score=20.28 Aligned_cols=31 Identities=16% Similarity=0.173 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHHHHhcCCeeEecCCCcEEEEEe
Q 038657 2 LNNEARETFLSALVSEGRAEWLDKGHRKCLILW 34 (112)
Q Consensus 2 Ls~e~~~~Il~~lv~~g~aew~d~~~~~~~I~W 34 (112)
+++..+..+|+.|+++|-+.-...+ +.++|.
T Consensus 65 ~s~sTVt~~L~rLe~KGlV~R~~~g--R~~~Y~ 95 (99)
T 2k4b_A 65 WSLATVKTLLGRLVKKEMLSTEKEG--RKFVYR 95 (99)
T ss_dssp CCHHHHHHHHHHHHHTTSCEEEEET--TEEEEE
T ss_pred CCHhhHHHHHHHHHHCCCEEEEeCC--CEEEEE
Confidence 5678999999999999998876554 355553
No 72
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=28.66 E-value=42 Score=21.12 Aligned_cols=50 Identities=20% Similarity=0.397 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHhcCCCCceEEeeeeccCCCcCCccccCCCHHHHHHHHHHHHhcCceeEEec
Q 038657 39 DWADIILGFVKDNGLEDSVMTVEEIRLGIESRGTELHGMDRTILMRALKLLEHKGKVAIFKG 100 (112)
Q Consensus 39 eWa~~Iy~Wv~~tG~~~tV~TlyEL~~Gd~t~~~ef~gmd~~vL~kaL~~L~k~gkAql~~~ 100 (112)
.|.-.|...+. .| -+|+.||.+- +.|++++.+.+.|+.|++.|=.+-...
T Consensus 14 ~~~~~IL~~L~-~~----~~~~~eLa~~-------l~~is~~tls~~L~~Le~~GlI~r~~~ 63 (107)
T 2hzt_A 14 KWKXVILXHLT-HG----KKRTSELKRL-------MPNITQKMLTQQLRELEADGVINRIVY 63 (107)
T ss_dssp TTHHHHHHHHT-TC----CBCHHHHHHH-------CTTSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred ccHHHHHHHHH-hC----CCCHHHHHHH-------hcCCCHHHHHHHHHHHHHCCCEEEeec
Confidence 45555555553 22 2466666532 238999999999999999997776544
No 73
>2plx_B Peptide inhibitor; helix-turn-helix, hydrolase; HET: FLC; 1.56A {Bos taurus}
Probab=27.19 E-value=38 Score=17.07 Aligned_cols=14 Identities=29% Similarity=0.335 Sum_probs=10.9
Q ss_pred CHHHHHHHHHHHHh
Q 038657 78 DRTILMRALKLLEH 91 (112)
Q Consensus 78 d~~vL~kaL~~L~k 91 (112)
.+++|+++|+--+|
T Consensus 13 spellrrcldncek 26 (26)
T 2plx_B 13 SPELLRRCLDNCEK 26 (26)
T ss_dssp CHHHHHHHHHHHTC
T ss_pred CHHHHHHHHhcccC
Confidence 57899999986543
No 74
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=27.07 E-value=41 Score=22.78 Aligned_cols=56 Identities=14% Similarity=0.253 Sum_probs=41.3
Q ss_pred HHHHHHHHHhcCCCCceEEeeeeccCCCcCCccccCCCHHHHHHHHHHHHhcCceeEEecCC
Q 038657 41 ADIILGFVKDNGLEDSVMTVEEIRLGIESRGTELHGMDRTILMRALKLLEHKGKVAIFKGTS 102 (112)
Q Consensus 41 a~~Iy~Wv~~tG~~~tV~TlyEL~~Gd~t~~~ef~gmd~~vL~kaL~~L~k~gkAql~~~~~ 102 (112)
-..|++.+.+++. -+|.+||.+- ...++.+++..-.-+.|+.|++.|-+.-+...+
T Consensus 29 R~~IL~~l~~~~~---~~sa~ei~~~---l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~ 84 (150)
T 2xig_A 29 REEVVSVLYRSGT---HLSPEEITHS---IRQKDKNTSISSVYRILNFLEKENFISVLETSK 84 (150)
T ss_dssp HHHHHHHHHHCSS---CBCHHHHHHH---HHHHSTTCCHHHHHHHHHHHHHTTSEEEEEETT
T ss_pred HHHHHHHHHhCCC---CCCHHHHHHH---HHHhCCCCCHhhHHHHHHHHHHCCcEEEEEeCC
Confidence 3567888877643 4666666543 223456899999999999999999998886654
No 75
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=27.06 E-value=48 Score=20.93 Aligned_cols=26 Identities=12% Similarity=-0.023 Sum_probs=23.0
Q ss_pred cccCCCHHHHHHHHHHHHhcCceeEE
Q 038657 73 ELHGMDRTILMRALKLLEHKGKVAIF 98 (112)
Q Consensus 73 ef~gmd~~vL~kaL~~L~k~gkAql~ 98 (112)
..-||++..+.+-++.|+++|=.+..
T Consensus 28 ~~~~ls~~~~~~~l~~L~~~GLI~~~ 53 (95)
T 1r7j_A 28 YGANLSYALTGRYIKMLMDLEIIRQE 53 (95)
T ss_dssp HHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHhCcCHHHHHHHHHHHHHCCCeEEE
Confidence 44689999999999999999988766
No 76
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=26.84 E-value=50 Score=19.65 Aligned_cols=49 Identities=18% Similarity=0.173 Sum_probs=36.2
Q ss_pred HHHHHHHHHHhcCCCCceEEeeeeccCCCcCCccccCCCHHHHHHHHHHHHhcCceeEEec
Q 038657 40 WADIILGFVKDNGLEDSVMTVEEIRLGIESRGTELHGMDRTILMRALKLLEHKGKVAIFKG 100 (112)
Q Consensus 40 Wa~~Iy~Wv~~tG~~~tV~TlyEL~~Gd~t~~~ef~gmd~~vL~kaL~~L~k~gkAql~~~ 100 (112)
+.-.|...+...| -+|+.||.+ .-|++++-+.+.|+.|++.|=.+-...
T Consensus 17 ~~~~iL~~L~~~~----~~~~~ela~--------~l~is~~tvs~~l~~L~~~gli~~~~~ 65 (100)
T 1ub9_A 17 VRLGIMIFLLPRR----KAPFSQIQK--------VLDLTPGNLDSHIRVLERNGLVKTYKV 65 (100)
T ss_dssp HHHHHHHHHHHHS----EEEHHHHHH--------HTTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHhcC----CcCHHHHHH--------HHCcCHHHHHHHHHHHHHCCCEEEEec
Confidence 3345666665543 378888875 247999999999999999998886643
No 77
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=26.66 E-value=1.1e+02 Score=26.03 Aligned_cols=97 Identities=15% Similarity=0.133 Sum_probs=64.6
Q ss_pred CCHHHHHHHHHHHHhcCCeeE-ecCCCcEEEEEecCh--HHHHHHHHHHHHhcCCCCceEEeeeecc--C-CCcCCcccc
Q 038657 2 LNNEARETFLSALVSEGRAEW-LDKGHRKCLILWHRI--QDWADIILGFVKDNGLEDSVMTVEEIRL--G-IESRGTELH 75 (112)
Q Consensus 2 Ls~e~~~~Il~~lv~~g~aew-~d~~~~~~~I~Wr~~--~eWa~~Iy~Wv~~tG~~~tV~TlyEL~~--G-d~t~~~ef~ 75 (112)
+||+.++.-.+.|..-|...- +-+=..+++|. ..+ +.=...|.+|+.+.|. +|..+|.+ | ++ .=.
T Consensus 455 ISp~Dll~A~~~le~Lg~~~~~L~~~~sgvlVv-s~~~~~~~~~~il~l~~~~g~----vT~~~la~~lg~~~----~~~ 525 (566)
T 1w7p_D 455 ISPMEMREACERFEHLGLNELKLVKVNKRILCV-TSEKFDVVKEKLVDLIGDNPG----SDLLRLTQILSSNN----SKS 525 (566)
T ss_dssp CCHHHHHHHHTTGGGGTCTTCEEEECSSSCEEE-ESSCHHHHHHHHHHHHTTSTT----CCHHHHHHHHSCSS----SCC
T ss_pred cCHHHHHHHHHHHHHcCCCeEEEEEECCEEEEE-cCCCchHHHHHHHHHHHhcCC----cCHHHHHHHhCCcc----ccC
Confidence 689999999999888764321 21111245566 444 3567788899977543 36666663 2 11 113
Q ss_pred CCCHHHHHHHHHHHHhcCceeEEecCCCCCcceEEc
Q 038657 76 GMDRTILMRALKLLEHKGKVAIFKGTSADDEGVKFS 111 (112)
Q Consensus 76 gmd~~vL~kaL~~L~k~gkAql~~~~~~~~~GVKf~ 111 (112)
+.+..+.+.+|+.++++|.+-+=... .|+.|+
T Consensus 526 ~Ws~~~A~e~L~~~e~eG~l~rDd~~----~G~~yy 557 (566)
T 1w7p_D 526 NWTLGILMEVLQNCVDEGDLLIDKQL----SGIYYY 557 (566)
T ss_dssp CBCHHHHHHHHHHHHHTTSEEEEEET----TEEEEE
T ss_pred cccHHHHHHHHHHHHHcCCEEEECCC----CceEEe
Confidence 59999999999999999999886332 278775
No 78
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=26.11 E-value=48 Score=21.39 Aligned_cols=26 Identities=8% Similarity=0.098 Sum_probs=22.1
Q ss_pred cccCCCHHHHHHHHHHHHhcCceeEE
Q 038657 73 ELHGMDRTILMRALKLLEHKGKVAIF 98 (112)
Q Consensus 73 ef~gmd~~vL~kaL~~L~k~gkAql~ 98 (112)
+--|++++-+.++|+.|+++|=..--
T Consensus 30 ~~l~vs~~tvs~~l~~Le~~Glv~r~ 55 (142)
T 1on2_A 30 EALAVHPSSVTKMVQKLDKDEYLIYE 55 (142)
T ss_dssp HHHTSCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHhCCCHHHHHHHHHHHHHCCCEEEe
Confidence 34689999999999999999977654
No 79
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=26.06 E-value=1.1e+02 Score=18.93 Aligned_cols=25 Identities=12% Similarity=0.195 Sum_probs=21.3
Q ss_pred CCHHHHHHHHHHHHhcCCeeEecCC
Q 038657 2 LNNEARETFLSALVSEGRAEWLDKG 26 (112)
Q Consensus 2 Ls~e~~~~Il~~lv~~g~aew~d~~ 26 (112)
+|+..+..+++.|+++|-++-...+
T Consensus 40 ~s~~tv~~~l~~L~~~Glv~r~~~~ 64 (123)
T 1okr_A 40 WSPKTIRTLITRLYKKGFIDRKKDN 64 (123)
T ss_dssp CCHHHHHHHHHHHHHHTSEEEEEET
T ss_pred CcHhhHHHHHHHHHHCCCeEEEecC
Confidence 6788999999999999998876543
No 80
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=25.87 E-value=20 Score=19.79 Aligned_cols=19 Identities=16% Similarity=0.370 Sum_probs=14.1
Q ss_pred CccccCCCHHHHHHHHHHH
Q 038657 71 GTELHGMDRTILMRALKLL 89 (112)
Q Consensus 71 ~~ef~gmd~~vL~kaL~~L 89 (112)
+..|..||+++|.+.+..|
T Consensus 6 ~~~~~~LP~eil~~I~~~L 24 (53)
T 1fs1_A 6 GVSWDSLPDELLLGIFSCL 24 (53)
T ss_dssp ---CCSSCHHHHHHHHTTS
T ss_pred CCCHHHCCHHHHHHHHHcC
Confidence 4568899999999988765
No 81
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=25.86 E-value=50 Score=21.14 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=21.0
Q ss_pred cccCCCHHHHHHHHHHHHhcCceeE
Q 038657 73 ELHGMDRTILMRALKLLEHKGKVAI 97 (112)
Q Consensus 73 ef~gmd~~vL~kaL~~L~k~gkAql 97 (112)
+--|++.+-+.++|+.|+++|=..-
T Consensus 39 ~~l~is~~tv~~~l~~Le~~Gli~r 63 (139)
T 2x4h_A 39 KDLKIAPSSVFEEVSHLEEKGLVKK 63 (139)
T ss_dssp HHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHhCCChHHHHHHHHHHHHCCCEEe
Confidence 3468999999999999999996543
No 82
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=25.67 E-value=47 Score=21.03 Aligned_cols=52 Identities=19% Similarity=0.261 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHhcCCCCceEEeeeeccCCCcCCccccCCCHHHHHHHHHHHHhcCceeEEecC
Q 038657 38 QDWADIILGFVKDNGLEDSVMTVEEIRLGIESRGTELHGMDRTILMRALKLLEHKGKVAIFKGT 101 (112)
Q Consensus 38 ~eWa~~Iy~Wv~~tG~~~tV~TlyEL~~Gd~t~~~ef~gmd~~vL~kaL~~L~k~gkAql~~~~ 101 (112)
+.|.-.|...+.+ |- +|+.||.+- +.+++++.+.+.|+.|++.|=.+-....
T Consensus 21 ~~~~~~IL~~L~~-~~----~~~~eLa~~-------l~~is~~tvs~~L~~Le~~GlI~r~~~~ 72 (112)
T 1z7u_A 21 GKWKLSLMDELFQ-GT----KRNGELMRA-------LDGITQRVLTDRLREMEKDGLVHRESFN 72 (112)
T ss_dssp STTHHHHHHHHHH-SC----BCHHHHHHH-------STTCCHHHHHHHHHHHHHHTSEEEEEEC
T ss_pred CccHHHHHHHHHh-CC----CCHHHHHHH-------hccCCHHHHHHHHHHHHHCCCEEEeecC
Confidence 4466556655543 31 567777642 2389999999999999999988766543
No 83
>3bxp_A Putative lipase/esterase; putative carboxylesterase, structural genomics, joint center structural genomics, JCSG; HET: EPE; 1.70A {Lactobacillus plantarum WCFS1} PDB: 3d3n_A*
Probab=25.41 E-value=1.2e+02 Score=20.67 Aligned_cols=53 Identities=15% Similarity=0.334 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHHHhcC-CeeEe--cCCCcEEEEEecC--------------hHHHHHHHHHHHHhcCCCC
Q 038657 2 LNNEARETFLSALVSEG-RAEWL--DKGHRKCLILWHR--------------IQDWADIILGFVKDNGLED 55 (112)
Q Consensus 2 Ls~e~~~~Il~~lv~~g-~aew~--d~~~~~~~I~Wr~--------------~~eWa~~Iy~Wv~~tG~~~ 55 (112)
++++..+.+.+.|.+.| +++.. +..... +.+... +++|-+.+.+|+.+.+...
T Consensus 205 vp~~~~~~~~~~l~~~~~~~~~~~~~~~~H~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~~ 274 (277)
T 3bxp_A 205 VPPINSLKYVQAMLQHQVATAYHLFGSGIHG-LALANHVTQKPGKDKYLNDQAAIWPQLALRWLQEQGLLA 274 (277)
T ss_dssp SCTHHHHHHHHHHHHTTCCEEEEECCCC-----------------CHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred cChHHHHHHHHHHHHCCCeEEEEEeCCCCcc-cccccccccCccccccccchHHHHHHHHHHHHHhccccc
Confidence 35567777888887765 33433 332222 233332 6999999999999988643
No 84
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=25.22 E-value=1.1e+02 Score=18.42 Aligned_cols=31 Identities=13% Similarity=0.052 Sum_probs=22.1
Q ss_pred CCHHHHHHHHHHHHhcCCeeEecCCCcEEEE
Q 038657 2 LNNEARETFLSALVSEGRAEWLDKGHRKCLI 32 (112)
Q Consensus 2 Ls~e~~~~Il~~lv~~g~aew~d~~~~~~~I 32 (112)
+|...+...+..|.+.|.+.-.+.....+.|
T Consensus 43 vs~~tV~~~L~~L~~~G~I~~~g~~~~~W~i 73 (77)
T 1qgp_A 43 TPKKEINRVLYSLAKKGKLQKEAGTPPLWKI 73 (77)
T ss_dssp CCHHHHHHHHHHHHHHTSEEEECSSSCEEEE
T ss_pred cCHHHHHHHHHHHHHCCCEEecCCCCCceEe
Confidence 5677888889999999988776644334433
No 85
>2e1n_A PEX, period extender; circadian clock, DNA binding protein, circadian clock protei; 1.80A {Synechococcus elongatus pcc 7942}
Probab=25.12 E-value=39 Score=22.98 Aligned_cols=43 Identities=21% Similarity=0.152 Sum_probs=31.9
Q ss_pred eEEeeeeccCCCcCCccccCCCHHHHHHHHHHHHhcCceeEEec
Q 038657 57 VMTVEEIRLGIESRGTELHGMDRTILMRALKLLEHKGKVAIFKG 100 (112)
Q Consensus 57 V~TlyEL~~Gd~t~~~ef~gmd~~vL~kaL~~L~k~gkAql~~~ 100 (112)
-++.|||.+-=.... .+.++.+..|-.+|+.|++.|=.+-...
T Consensus 47 ~~~Gyei~k~l~~~~-~~~~is~gtLYp~L~rLe~~GlI~~~~~ 89 (138)
T 2e1n_A 47 DSYGTELIQHLETHW-PNYRLSDTVLYTALKFLEDEQIISGYWK 89 (138)
T ss_dssp CEEHHHHHHHHHHHS-TTEECCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCcHHHHHHHHHHHc-CCCCCCccHHHHHHHHHHHCCCEEEEee
Confidence 367777765322112 4778999999999999999998887654
No 86
>4f21_A Carboxylesterase/phospholipase family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Francisella tularensis subsp}
Probab=25.10 E-value=1.4e+02 Score=21.34 Aligned_cols=47 Identities=9% Similarity=0.116 Sum_probs=33.9
Q ss_pred ChHHHHHHHHHHHHhcCCCCceEEeeeeccCCCcCCccccCCCHHHHHHHHHHHHhc
Q 038657 36 RIQDWADIILGFVKDNGLEDSVMTVEEIRLGIESRGTELHGMDRTILMRALKLLEHK 92 (112)
Q Consensus 36 ~~~eWa~~Iy~Wv~~tG~~~tV~TlyEL~~Gd~t~~~ef~gmd~~vL~kaL~~L~k~ 92 (112)
=|-+++...++.+++.|... ++.+. .|- + |+++++.+..+.+-|.|+
T Consensus 197 Vp~~~~~~~~~~L~~~g~~v---~~~~y-~g~---g---H~i~~~~l~~~~~fL~k~ 243 (246)
T 4f21_A 197 LPEVLGHDLSDKLKVSGFAN---EYKHY-VGM---Q---HSVCMEEIKDISNFIAKT 243 (246)
T ss_dssp SCHHHHHHHHHHHHTTTCCE---EEEEE-SSC---C---SSCCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHCCCCe---EEEEE-CCC---C---CccCHHHHHHHHHHHHHH
Confidence 37799999999999988753 33333 221 1 678899998888888764
No 87
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=24.77 E-value=41 Score=22.65 Aligned_cols=54 Identities=22% Similarity=0.215 Sum_probs=39.3
Q ss_pred HHHHHHHHhcCCCCceEEeeeeccCCCcCCccccCCCHHHHHHHHHHHHhcCceeEEecCC
Q 038657 42 DIILGFVKDNGLEDSVMTVEEIRLGIESRGTELHGMDRTILMRALKLLEHKGKVAIFKGTS 102 (112)
Q Consensus 42 ~~Iy~Wv~~tG~~~tV~TlyEL~~Gd~t~~~ef~gmd~~vL~kaL~~L~k~gkAql~~~~~ 102 (112)
..|++.+.+++ -.|.+||.+- ...++.+++..-.-|+|+.|++.|-+.-+..++
T Consensus 22 ~~Il~~l~~~~----h~ta~ei~~~---l~~~~~~is~~TVYR~L~~L~e~Glv~~i~~~~ 75 (145)
T 3eyy_A 22 QLVLEAVDTLE----HATPDDILGE---VRKTASGINISTVYRTLELLEELGLVSHAHLGH 75 (145)
T ss_dssp HHHHHHHHHHS----SBCHHHHHHH---HHTTCTTCCHHHHHHHHHHHHHHTSEEEEECGG
T ss_pred HHHHHHHHhcC----CCCHHHHHHH---HHhhCCCCCHhHHHHHHHHHHHCCcEEEEEeCC
Confidence 56788887775 3466655532 123456799999999999999999998886543
No 88
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=24.56 E-value=58 Score=19.83 Aligned_cols=24 Identities=21% Similarity=0.122 Sum_probs=21.1
Q ss_pred cCCCHHHHHHHHHHHHhcCceeEE
Q 038657 75 HGMDRTILMRALKLLEHKGKVAIF 98 (112)
Q Consensus 75 ~gmd~~vL~kaL~~L~k~gkAql~ 98 (112)
-|++.+-+.+.|+.|++.|-..-.
T Consensus 53 l~is~~tv~~~L~~L~~~Glv~~~ 76 (96)
T 1y0u_A 53 LSLSKKQLDYHLKVLEAGFCIERV 76 (96)
T ss_dssp HTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HCcCHHHHHHHHHHHHHCCCEEEE
Confidence 489999999999999999987643
No 89
>1ou8_A Stringent starvation protein B homolog; peptide-binding pocket, protein-peptide complex, homodimer, transport protein; 1.60A {Haemophilus influenzae} SCOP: b.136.1.1 PDB: 1zsz_A 1twb_A 1zsz_B
Probab=24.37 E-value=35 Score=23.19 Aligned_cols=16 Identities=13% Similarity=0.252 Sum_probs=12.8
Q ss_pred HHHHHHHHhcCCCCce
Q 038657 42 DIILGFVKDNGLEDSV 57 (112)
Q Consensus 42 ~~Iy~Wv~~tG~~~tV 57 (112)
..+|+|+.+||.+--+
T Consensus 14 RA~yeWi~DN~~TP~l 29 (111)
T 1ou8_A 14 RAYYDWLVDNSFTPYL 29 (111)
T ss_dssp HHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHhCCCcceE
Confidence 4789999999985444
No 90
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=24.21 E-value=51 Score=23.26 Aligned_cols=28 Identities=39% Similarity=0.543 Sum_probs=24.5
Q ss_pred cccCCCHHHHHHHHHHHHhcCceeEEec
Q 038657 73 ELHGMDRTILMRALKLLEHKGKVAIFKG 100 (112)
Q Consensus 73 ef~gmd~~vL~kaL~~L~k~gkAql~~~ 100 (112)
+-+|+...-+++||+.|+..|=.+...+
T Consensus 39 ~~~gVSR~tVReAL~~L~~eGlv~~~~g 66 (239)
T 1hw1_A 39 ELIGVTRTTLREVLQRLARDGWLTIQHG 66 (239)
T ss_dssp HHHTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHCCCHHHHHHHHHHHHHCCcEEEecC
Confidence 4589999999999999999998888743
No 91
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=24.04 E-value=57 Score=20.77 Aligned_cols=23 Identities=39% Similarity=0.523 Sum_probs=20.1
Q ss_pred ccCCCHHHHHHHHHHHHhcCcee
Q 038657 74 LHGMDRTILMRALKLLEHKGKVA 96 (112)
Q Consensus 74 f~gmd~~vL~kaL~~L~k~gkAq 96 (112)
+.|+.++.|.+-|+.|++.|=.+
T Consensus 52 l~gis~~~ls~~L~~Le~~GlV~ 74 (111)
T 3df8_A 52 IPGISSTILSRRIKDLIDSGLVE 74 (111)
T ss_dssp STTCCHHHHHHHHHHHHHTTSEE
T ss_pred ccCCCHHHHHHHHHHHHHCCCEE
Confidence 34899999999999999999654
No 92
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=23.80 E-value=1.2e+02 Score=17.86 Aligned_cols=45 Identities=16% Similarity=0.208 Sum_probs=29.8
Q ss_pred CCHHHHHHHHHHHHhcCCeeEecCCCcEEEEEecChHHHHHHHHHHHH
Q 038657 2 LNNEARETFLSALVSEGRAEWLDKGHRKCLILWHRIQDWADIILGFVK 49 (112)
Q Consensus 2 Ls~e~~~~Il~~lv~~g~aew~d~~~~~~~I~Wr~~~eWa~~Iy~Wv~ 49 (112)
+|+..+...++.|.+.|-++-...++ ...|--+++.. ..+.+++.
T Consensus 50 is~~tvs~~l~~L~~~glv~~~~~~r--~~~y~l~~~~~-~~l~~~l~ 94 (99)
T 3cuo_A 50 LSASATSQHLARMRDEGLIDSQRDAQ--RILYSIKNEAV-NAIIATLK 94 (99)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEEECSS--CEEEEECCHHH-HHHHHHHH
T ss_pred cCHHHHHHHHHHHHHCCCEEEEecCC--EEEEEEChHHH-HHHHHHHH
Confidence 68889999999999999988765443 22344444433 44455554
No 93
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=23.49 E-value=78 Score=20.31 Aligned_cols=47 Identities=15% Similarity=0.196 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhcCCCCceEEeeeeccCCCcCCccccCCCHHHHHHHHHHHHhcCceeE
Q 038657 40 WADIILGFVKDNGLEDSVMTVEEIRLGIESRGTELHGMDRTILMRALKLLEHKGKVAI 97 (112)
Q Consensus 40 Wa~~Iy~Wv~~tG~~~tV~TlyEL~~Gd~t~~~ef~gmd~~vL~kaL~~L~k~gkAql 97 (112)
=.+.|++-+.+.|. -+.-=+|. +--|+|.--+-|||+.|-|.||..-
T Consensus 20 ~eekVLe~LkeaG~---PlkageIa--------e~~GvdKKeVdKaik~LKkEgkI~S 66 (80)
T 2lnb_A 20 LEQRILQVLTEAGS---PVKLAQLV--------KECQAPKRELNQVLYRMKKELKVSL 66 (80)
T ss_dssp HHHHHHHHHHHHTS---CEEHHHHH--------HHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcCC---CCCHHHHH--------HHHCCCHHHHHHHHHHHHHcCCccC
Confidence 34556666666655 22222222 5578999999999999999999543
No 94
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=23.33 E-value=64 Score=23.27 Aligned_cols=27 Identities=26% Similarity=0.361 Sum_probs=24.4
Q ss_pred cccCCCHHHHHHHHHHHHhcCceeEEe
Q 038657 73 ELHGMDRTILMRALKLLEHKGKVAIFK 99 (112)
Q Consensus 73 ef~gmd~~vL~kaL~~L~k~gkAql~~ 99 (112)
+-+|+...-+++||+.|+..|-.+...
T Consensus 57 ~~lgVSr~~VReAL~~L~~~Glv~~~~ 83 (237)
T 3c7j_A 57 TLFGVSRMPVREALRQLEAQSLLRVET 83 (237)
T ss_dssp HHHTSCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHCCCHHHHHHHHHHHHHCCCEEEeC
Confidence 458999999999999999999998874
No 95
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=23.12 E-value=61 Score=20.36 Aligned_cols=36 Identities=25% Similarity=0.189 Sum_probs=28.8
Q ss_pred EEeeeeccCCCcCCccccCCCHHHHHHHHHHHHhcCceeEEecC
Q 038657 58 MTVEEIRLGIESRGTELHGMDRTILMRALKLLEHKGKVAIFKGT 101 (112)
Q Consensus 58 ~TlyEL~~Gd~t~~~ef~gmd~~vL~kaL~~L~k~gkAql~~~~ 101 (112)
+|+-||. +--|++.+-+.+.|+.|+++|=.+-..+.
T Consensus 42 ~t~~ela--------~~l~~~~stvs~~l~~L~~~G~v~r~~~~ 77 (152)
T 1ku9_A 42 LTISDIM--------EELKISKGNVSMSLKKLEELGFVRKVWIK 77 (152)
T ss_dssp EEHHHHH--------HHHTCCHHHHHHHHHHHHHTTSEEEECCT
T ss_pred CCHHHHH--------HHHCcCHHHHHHHHHHHHHCCCEEEEecC
Confidence 5666665 44689999999999999999988876543
No 96
>3sqg_B Methyl-coenzyme M reductase, beta subunit; anaerobic methane oxidation, transferase; HET: MHS 0AF TP7 M43 1PE PGE P6G; 2.10A {Uncultured archaeon}
Probab=22.85 E-value=16 Score=29.94 Aligned_cols=19 Identities=32% Similarity=0.644 Sum_probs=17.4
Q ss_pred HHHHHHHHhcCCCCceEEe
Q 038657 42 DIILGFVKDNGLEDSVMTV 60 (112)
Q Consensus 42 ~~Iy~Wv~~tG~~~tV~Tl 60 (112)
+++|+-+.+||+.|||-|+
T Consensus 245 NlvydlVK~Ngk~GTvGtV 263 (433)
T 3sqg_B 245 NLLYSLIKDNGQDGSLGDV 263 (433)
T ss_dssp GHHHHHHHHHTTTCCHHHH
T ss_pred hhHHHHHHhcCCCCchhHh
Confidence 6899999999999999886
No 97
>1yfn_A Stringent starvation protein B; protein-peptide complex, SSPB, RSEA, protein binding; 1.80A {Escherichia coli} SCOP: b.136.1.1 PDB: 1ox9_A 1ox8_A
Probab=22.45 E-value=40 Score=23.14 Aligned_cols=16 Identities=19% Similarity=0.308 Sum_probs=12.8
Q ss_pred HHHHHHHHhcCCCCce
Q 038657 42 DIILGFVKDNGLEDSV 57 (112)
Q Consensus 42 ~~Iy~Wv~~tG~~~tV 57 (112)
..+|+|+.+||.+--+
T Consensus 15 RA~yeWi~DN~~TP~l 30 (118)
T 1yfn_A 15 RAFYEWLLDNQLTPHL 30 (118)
T ss_dssp HHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHcCCCcceE
Confidence 4789999999985444
No 98
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=22.41 E-value=1.3e+02 Score=18.64 Aligned_cols=29 Identities=10% Similarity=-0.050 Sum_probs=24.9
Q ss_pred cccCCCHHHHHHHHHHHHhcCceeEEecC
Q 038657 73 ELHGMDRTILMRALKLLEHKGKVAIFKGT 101 (112)
Q Consensus 73 ef~gmd~~vL~kaL~~L~k~gkAql~~~~ 101 (112)
+.-+++++-+.++++.|+++|=.+...+.
T Consensus 58 ~~l~~~~~tvs~~l~~Le~~Gli~r~~~~ 86 (141)
T 3bro_A 58 SEFSIKSSTATVLLQRMEIKKLLYRKVSG 86 (141)
T ss_dssp HHHTCCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred HHHCCCcchHHHHHHHHHHCCCEEeeCCC
Confidence 45689999999999999999988877554
No 99
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=22.36 E-value=76 Score=22.94 Aligned_cols=54 Identities=24% Similarity=0.286 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHhcCC-CCceE-EeeeeccCCCcCCccccCCCHHHHHHHHHHHHhcCceeEEec
Q 038657 39 DWADIILGFVKDNGL-EDSVM-TVEEIRLGIESRGTELHGMDRTILMRALKLLEHKGKVAIFKG 100 (112)
Q Consensus 39 eWa~~Iy~Wv~~tG~-~~tV~-TlyEL~~Gd~t~~~ef~gmd~~vL~kaL~~L~k~gkAql~~~ 100 (112)
+-++.|.+-+.+... -|+-+ |--||+ +-+|+...-+++||+.|+++|-..-..+
T Consensus 13 ~i~~~l~~~I~~g~~~~g~~lPse~~La--------~~~~vSr~tvr~Al~~L~~~G~i~~~~g 68 (236)
T 3edp_A 13 VIASKIKDSINRDEYKTGMLMPNETALQ--------EIYSSSRTTIRRAVDLLVEEGLVVRKNG 68 (236)
T ss_dssp HHHHHHHHHHHTTSSCCCC--CCHHHHH--------HHTTCCHHHHHHHHHHHHHTTSEEEETT
T ss_pred HHHHHHHHHHHhCCCCCcCCCcCHHHHH--------HHHCcCHHHHHHHHHHHHHCCCEEEECC
Confidence 344455555544322 23433 444444 4589999999999999999998766643
No 100
>3iz6_S 40S ribosomal protein S19 (S19E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=22.25 E-value=37 Score=24.09 Aligned_cols=94 Identities=19% Similarity=0.192 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHhcCCee---EecCCCcEEEEEecChHH--H-----HHHHHHHHHhcC-CCCceEEeeeeccCCCcCCc
Q 038657 4 NEARETFLSALVSEGRAE---WLDKGHRKCLILWHRIQD--W-----ADIILGFVKDNG-LEDSVMTVEEIRLGIESRGT 72 (112)
Q Consensus 4 ~e~~~~Il~~lv~~g~ae---w~d~~~~~~~I~Wr~~~e--W-----a~~Iy~Wv~~tG-~~~tV~TlyEL~~Gd~t~~~ 72 (112)
.++|+.+-++|.++|+.+ |.|--||... ==+.|.+ | |+++..---..+ =.++..++|-=..--.+.+.
T Consensus 15 ~~fI~~~A~~LK~~gki~~P~W~d~vKTg~~-KEl~P~d~DW~Y~RaASi~R~lYlrg~vGV~~lrk~YGg~krrG~~P~ 93 (146)
T 3iz6_S 15 HEFVKAYSAHLKRSGKMELPEWVDIVKTARF-KELPPYDPDWYYTRAASIARKIYLRQGIGVGGFQKIYGGRQRNGSRPP 93 (146)
T ss_dssp HHHHHHHHTTGGGSSCCCCTTTGGGCCSSSS-CSSSTHHHHTHHHHHHHHHHHHHHHCSBCHHHHHSSSCCCCCCCSSCC
T ss_pred HHHHHHHHHHHHHcCCCCCCchHHHhhcccc-ccCCCCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHCCCCCCCCCCC
Confidence 578888889999888754 6553332100 0012222 3 334333223323 26677888877776678889
Q ss_pred cccCCCHHHHHHHHHHHHhcCceeEE
Q 038657 73 ELHGMDRTILMRALKLLEHKGKVAIF 98 (112)
Q Consensus 73 ef~gmd~~vL~kaL~~L~k~gkAql~ 98 (112)
.|..=.-.++++||+.||+-|=.+--
T Consensus 94 h~~~asg~iiR~~LQqLE~~g~Vek~ 119 (146)
T 3iz6_S 94 HFCKSSGAISRNILQQLQKMGIIDVD 119 (146)
T ss_dssp CCCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred cccCCCcHHHHHHHHHHHHCCCeEec
Confidence 99999999999999999998877643
No 101
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=22.25 E-value=66 Score=19.75 Aligned_cols=45 Identities=18% Similarity=0.114 Sum_probs=32.5
Q ss_pred HHHHHHHHhcCCCCceEEeeeeccCCCcCCccccCCCHHHHHHHHHHHHhcCceeEEe
Q 038657 42 DIILGFVKDNGLEDSVMTVEEIRLGIESRGTELHGMDRTILMRALKLLEHKGKVAIFK 99 (112)
Q Consensus 42 ~~Iy~Wv~~tG~~~tV~TlyEL~~Gd~t~~~ef~gmd~~vL~kaL~~L~k~gkAql~~ 99 (112)
-.|...+ ..|- +|+-||.+ --|++++-+.+.|+.|++.|-..-..
T Consensus 24 ~~IL~~L-~~~~----~~~~ela~--------~l~is~~tv~~~l~~L~~~gli~~~~ 68 (114)
T 2oqg_A 24 WEILTEL-GRAD----QSASSLAT--------RLPVSRQAIAKHLNALQACGLVESVK 68 (114)
T ss_dssp HHHHHHH-HHSC----BCHHHHHH--------HSSSCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHH-HcCC----CCHHHHHH--------HHCcCHHHHHHHHHHHHHCCCeeEEe
Confidence 3455556 3332 56667664 34799999999999999999887654
No 102
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=22.19 E-value=80 Score=23.00 Aligned_cols=53 Identities=19% Similarity=0.153 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhcCCCCceE-EeeeeccCCCcCCccccCCCHHHHHHHHHHHHhcCceeEEecC
Q 038657 39 DWADIILGFVKDNGLEDSVM-TVEEIRLGIESRGTELHGMDRTILMRALKLLEHKGKVAIFKGT 101 (112)
Q Consensus 39 eWa~~Iy~Wv~~tG~~~tV~-TlyEL~~Gd~t~~~ef~gmd~~vL~kaL~~L~k~gkAql~~~~ 101 (112)
+-++.|.+-+.. =.-|+-+ |--||+ +-+|+...-+++||+.|+++|-..- .+.
T Consensus 18 ~i~~~l~~~I~~-~~~g~~lPse~~La--------~~~~vSr~tvr~Al~~L~~~G~i~~-~g~ 71 (248)
T 3f8m_A 18 VVRAELDRMLDG-MRIGDPFPAEREIA--------EQFEVARETVRQALRELLIDGRVER-RGR 71 (248)
T ss_dssp HHHHHHHHHHHH-CCTTCBCCCHHHHH--------HHTTCCHHHHHHHHHHHHHTTSEEE-ETT
T ss_pred HHHHHHHHHHhC-CCCCCcCcCHHHHH--------HHHCcCHHHHHHHHHHHHHCCCEEe-CCC
Confidence 445555555552 3345444 444544 4589999999999999999998877 654
No 103
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=22.18 E-value=1.4e+02 Score=18.33 Aligned_cols=22 Identities=14% Similarity=0.161 Sum_probs=20.0
Q ss_pred CCHHHHHHHHHHHHhcCCeeEe
Q 038657 2 LNNEARETFLSALVSEGRAEWL 23 (112)
Q Consensus 2 Ls~e~~~~Il~~lv~~g~aew~ 23 (112)
+|+..++..+..|.+.|-++..
T Consensus 45 vs~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 45 IKVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp SCHHHHHHHHHHHHHHTSCEEE
T ss_pred cCHHHHHHHHHHHHHCCCEEEE
Confidence 6889999999999999998876
No 104
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=22.16 E-value=63 Score=21.62 Aligned_cols=51 Identities=22% Similarity=0.394 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHhcCCCCceEEeeeeccCCCcCCccccCCCHHHHHHHHHHHHhcCceeEEecC
Q 038657 38 QDWADIILGFVKDNGLEDSVMTVEEIRLGIESRGTELHGMDRTILMRALKLLEHKGKVAIFKGT 101 (112)
Q Consensus 38 ~eWa~~Iy~Wv~~tG~~~tV~TlyEL~~Gd~t~~~ef~gmd~~vL~kaL~~L~k~gkAql~~~~ 101 (112)
+.|.-.|...+. .| .+|+-||.+ .+ |++++.+.+.|+.|++.|=.+-....
T Consensus 23 ~~w~l~IL~~L~-~g----~~~~~eLa~-------~l-gis~~tls~~L~~Le~~GlI~r~~~~ 73 (146)
T 2f2e_A 23 DGWSMLIVRDAF-EG----LTRFGEFQK-------SL-GLAKNILAARLRNLVEHGVMVAVPAE 73 (146)
T ss_dssp SSSHHHHHHHHH-TT----CCSHHHHHH-------HH-CCCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred CchHHHHHHHHH-hC----CCCHHHHHH-------Hh-CCCHHHHHHHHHHHHHCCCEEEEecC
Confidence 346555665553 23 245555542 23 89999999999999999988766443
No 105
>1hbn_B Methyl-coenzyme M reductase I beta subunit; methanogenesis, biological methanogenesis, NI-enzyme, oxidoreductase; HET: MHS AGM MGN F43 TP7; 1.16A {Methanothermobacterthermautotrophicus} SCOP: a.89.1.1 d.58.31.2 PDB: 1hbm_B* 1hbo_B* 1hbu_B* 1mro_B* 3m1v_B* 3m2r_B* 3m2u_B* 3m2v_B* 3m30_B* 3m32_B* 3pot_B* 1e6v_B*
Probab=21.93 E-value=17 Score=29.84 Aligned_cols=19 Identities=37% Similarity=0.646 Sum_probs=17.3
Q ss_pred HHHHHHHHhcCCCCceEEe
Q 038657 42 DIILGFVKDNGLEDSVMTV 60 (112)
Q Consensus 42 ~~Iy~Wv~~tG~~~tV~Tl 60 (112)
+++|+-+.+||+.|||-|+
T Consensus 249 NlvydlVK~Ngk~GTvGtV 267 (442)
T 1hbn_B 249 NLVFDLVKANGKEGTVGSV 267 (442)
T ss_dssp GHHHHHHHHHTTTCCHHHH
T ss_pred hhHHHHHHhcCCCCchhHh
Confidence 6899999999999999876
No 106
>1e6y_B Methyl-coenzyme M reductase I beta subunit; biological methanogenesis, NI-enzyme, oxidoreductase, NI ENZ; HET: MHS AGM F43 TP7; 1.6A {Methanosarcina barkeri} SCOP: a.89.1.1 d.58.31.2
Probab=21.86 E-value=17 Score=29.86 Aligned_cols=19 Identities=32% Similarity=0.637 Sum_probs=17.3
Q ss_pred HHHHHHHHhcCCCCceEEe
Q 038657 42 DIILGFVKDNGLEDSVMTV 60 (112)
Q Consensus 42 ~~Iy~Wv~~tG~~~tV~Tl 60 (112)
+++|+-+++||+.|||-|+
T Consensus 246 NlvydlVK~Ngk~GTvGtV 264 (433)
T 1e6y_B 246 NLLYDIVKENGKDGTIGTV 264 (433)
T ss_dssp THHHHHHHHHTTTCCHHHH
T ss_pred hhHHHHHHhcCCCCchhHh
Confidence 5899999999999999876
No 107
>2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium thermocellum atcc 27405}
Probab=21.70 E-value=58 Score=20.02 Aligned_cols=18 Identities=28% Similarity=0.469 Sum_probs=15.4
Q ss_pred cccCCCHHHHHHHHHHHH
Q 038657 73 ELHGMDRTILMRALKLLE 90 (112)
Q Consensus 73 ef~gmd~~vL~kaL~~L~ 90 (112)
.-||+|++-|.+.|+.+.
T Consensus 46 ~~hgiD~d~ll~eLn~~i 63 (76)
T 2k53_A 46 AVHGIDADKLVKELNEYF 63 (76)
T ss_dssp HHHTCCHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHH
Confidence 479999999999998654
No 108
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=21.54 E-value=68 Score=20.28 Aligned_cols=50 Identities=18% Similarity=0.238 Sum_probs=34.9
Q ss_pred ChHHHHHHHHHHHHhcCCCCceEEeeeeccCCCcCCccccCCCHHHHHHHHHHHHhcCceeEEec
Q 038657 36 RIQDWADIILGFVKDNGLEDSVMTVEEIRLGIESRGTELHGMDRTILMRALKLLEHKGKVAIFKG 100 (112)
Q Consensus 36 ~~~eWa~~Iy~Wv~~tG~~~tV~TlyEL~~Gd~t~~~ef~gmd~~vL~kaL~~L~k~gkAql~~~ 100 (112)
+|.+|. |...+...| +|.-||. +.-|++.+-+.++|+.|+++|=.+-..+
T Consensus 37 t~~~~~--iL~~l~~~~-----~t~~eLa--------~~l~~s~~tvs~~l~~L~~~Glv~r~~~ 86 (146)
T 3tgn_A 37 TNTQEH--ILMLLSEES-----LTNSELA--------RRLNVSQAAVTKAIKSLVKEGMLETSKD 86 (146)
T ss_dssp CHHHHH--HHHHHTTCC-----CCHHHHH--------HHHTCCHHHHHHHHHHHHHTTSEEC---
T ss_pred CHHHHH--HHHHHHhCC-----CCHHHHH--------HHHCCCHHHHHHHHHHHHHCCCeEeccC
Confidence 677775 444554443 6666666 4458999999999999999998776544
No 109
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=21.41 E-value=72 Score=20.86 Aligned_cols=53 Identities=17% Similarity=0.200 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhcCC-CCceE-EeeeeccCCCcCCccccCCCHHHHHHHHHHHHhcCceeEEe
Q 038657 39 DWADIILGFVKDNGL-EDSVM-TVEEIRLGIESRGTELHGMDRTILMRALKLLEHKGKVAIFK 99 (112)
Q Consensus 39 eWa~~Iy~Wv~~tG~-~~tV~-TlyEL~~Gd~t~~~ef~gmd~~vL~kaL~~L~k~gkAql~~ 99 (112)
.-++.|.+.+.+... -|+-+ +.-||+ +-+|+...-+++||+.|++.|-.....
T Consensus 15 ~i~~~l~~~I~~g~~~~G~~lPs~~~La--------~~~~vSr~tvr~Al~~L~~~G~i~~~~ 69 (126)
T 3ic7_A 15 QIADRICDDILLGQYEEEGRIPSVREYA--------SIVEVNANTVMRSYEYLQSQEVIYNKR 69 (126)
T ss_dssp HHHHHHHHHHHTTSSCBTSEECCTTTTT--------TCC-CCSGGGHHHHHHHHTTTSEEEET
T ss_pred HHHHHHHHHHHhCCCCCCCcCcCHHHHH--------HHHCcCHHHHHHHHHHHHHCCcEEEEc
Confidence 344555555554433 34444 444444 457899999999999999999877663
No 110
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=21.23 E-value=63 Score=21.36 Aligned_cols=51 Identities=22% Similarity=0.426 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHhcCCCCceEEeeeeccCCCcCCccccCCCHHHHHHHHHHHHhcCceeEEec
Q 038657 38 QDWADIILGFVKDNGLEDSVMTVEEIRLGIESRGTELHGMDRTILMRALKLLEHKGKVAIFKG 100 (112)
Q Consensus 38 ~eWa~~Iy~Wv~~tG~~~tV~TlyEL~~Gd~t~~~ef~gmd~~vL~kaL~~L~k~gkAql~~~ 100 (112)
..|.-.|...+. .| -+|+.||.+ .+.|+++..|.+.|+.|++.|=.+-...
T Consensus 34 ~~w~l~IL~~L~-~g----~~~~~eLa~-------~l~gis~~tls~~L~~Le~~GlV~r~~~ 84 (131)
T 1yyv_A 34 SRWGVLILVALR-DG----THRFSDLRR-------XMGGVSEXMLAQSLQALEQDGFLNRVSY 84 (131)
T ss_dssp SHHHHHHHHHGG-GC----CEEHHHHHH-------HSTTCCHHHHHHHHHHHHHHTCEEEEEE
T ss_pred CCcHHHHHHHHH-cC----CCCHHHHHH-------HhccCCHHHHHHHHHHHHHCCcEEEEec
Confidence 467766666664 33 367777764 2347999999999999999998776544
No 111
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=21.18 E-value=73 Score=20.74 Aligned_cols=41 Identities=17% Similarity=0.000 Sum_probs=30.9
Q ss_pred EEeeeeccCCCcCCccccCCCHHHHHHHHHHHHhcCceeEEec
Q 038657 58 MTVEEIRLGIESRGTELHGMDRTILMRALKLLEHKGKVAIFKG 100 (112)
Q Consensus 58 ~TlyEL~~Gd~t~~~ef~gmd~~vL~kaL~~L~k~gkAql~~~ 100 (112)
++-|||.+-=+. ..|.++++..|-.+|+.|+++|=.+--..
T Consensus 27 ~~Gyei~~~l~~--~g~~~is~gtlY~~L~rLe~~GlI~~~~~ 67 (116)
T 3hhh_A 27 TYGYEITKILND--QGFTEIVEGTVYTILLRLEKNQWVIAEKK 67 (116)
T ss_dssp BCHHHHHHHHHT--TSCSSCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCHHHHHHHHHH--cCCCCCCccHHHHHHHHHHHCCCEEEEee
Confidence 566777654211 34778999999999999999998877643
No 112
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=21.15 E-value=1.6e+02 Score=20.24 Aligned_cols=38 Identities=13% Similarity=0.134 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHHHHhcCCeeEecCCCcEEEEEecChHHH
Q 038657 2 LNNEARETFLSALVSEGRAEWLDKGHRKCLILWHRIQDW 40 (112)
Q Consensus 2 Ls~e~~~~Il~~lv~~g~aew~d~~~~~~~I~Wr~~~eW 40 (112)
+|+.+++.|+..|.+.|-.+-.... ..-+.+=|+|++-
T Consensus 56 i~~~~l~kil~~L~~aGlv~s~rG~-~GGy~Lar~p~eI 93 (159)
T 3lwf_A 56 LSEHYLEQLIGPLRNAGIVKSIRGA-HGGYVLNGDPEKI 93 (159)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEECST-TCEEEECSCTTTC
T ss_pred cCHHHHHHHHHHHHHCCeEEEecCC-CCceEecCCHHHC
Confidence 7899999999999999998865433 3456778999875
No 113
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=20.94 E-value=85 Score=22.63 Aligned_cols=53 Identities=19% Similarity=0.399 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHhcCC-CCceE-EeeeeccCCCcCCccccCCCHHHHHHHHHHHHhcCceeEEe
Q 038657 39 DWADIILGFVKDNGL-EDSVM-TVEEIRLGIESRGTELHGMDRTILMRALKLLEHKGKVAIFK 99 (112)
Q Consensus 39 eWa~~Iy~Wv~~tG~-~~tV~-TlyEL~~Gd~t~~~ef~gmd~~vL~kaL~~L~k~gkAql~~ 99 (112)
+-++.|.+.+.+... -|+-+ |.-||+ +-+|+...-+++||+.|+++|-.....
T Consensus 9 ~i~~~l~~~I~~g~~~~g~~lPse~~La--------~~~~vSr~tvr~Al~~L~~~g~i~~~~ 63 (239)
T 3bwg_A 9 QIATEIETYIEEHQLQQGDKLPVLETLM--------AQFEVSKSTITKSLELLEQKGAIFQVR 63 (239)
T ss_dssp HHHHHHHHHHHHTTCCTTCBCCCHHHHH--------HHTTCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHHHHhCCCCCCCCCcCHHHHH--------HHHCCCHHHHHHHHHHHHHCCcEEEeC
Confidence 344555555554332 34444 444554 458899999999999999999776653
No 114
>3l9f_A Putative uncharacterized protein SMU.1604C; PADR, transcription regulator; 1.80A {Streptococcus mutans}
Probab=20.72 E-value=30 Score=25.15 Aligned_cols=44 Identities=16% Similarity=0.053 Sum_probs=34.8
Q ss_pred eEEeeeeccCCCcCCccccCCCHHHHHHHHHHHHhcCceeEEec
Q 038657 57 VMTVEEIRLGIESRGTELHGMDRTILMRALKLLEHKGKVAIFKG 100 (112)
Q Consensus 57 V~TlyEL~~Gd~t~~~ef~gmd~~vL~kaL~~L~k~gkAql~~~ 100 (112)
-++-|||.+-=+.....|.++.+..|-.+|+.|++.|-.+.-..
T Consensus 49 p~~GYeL~~~l~~~~~~~~~~s~g~lY~~L~rLe~~GlI~~~~~ 92 (204)
T 3l9f_A 49 ERSGYEINDILQNQLSYFYDGTYGMIYPTLRKLEKDGKITKEVV 92 (204)
T ss_dssp CEEHHHHHHHHHHTSTTTEECCTTCHHHHHHHHHHTTSEEEEEE
T ss_pred CCCHHHHHHHHHHHhCCccCCCcchHHHHHHHHHHCCCeEEEee
Confidence 47888888764333446889999999999999999998887643
No 115
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=20.70 E-value=1.2e+02 Score=19.00 Aligned_cols=29 Identities=10% Similarity=0.119 Sum_probs=25.0
Q ss_pred cCCCHHHHHHHHHHHHhcCceeEEecCCC
Q 038657 75 HGMDRTILMRALKLLEHKGKVAIFKGTSA 103 (112)
Q Consensus 75 ~gmd~~vL~kaL~~L~k~gkAql~~~~~~ 103 (112)
+||..+....-++.|+++|+.+=.-++.|
T Consensus 31 F~l~t~~~i~RI~~Le~~g~ltGViDDRG 59 (72)
T 1wi9_A 31 MGLRTQDAINRIQDLLTEGTLTGVIDDRG 59 (72)
T ss_dssp HCSCHHHHHHHHHHHHHHSSSCEEECTTC
T ss_pred hCCChHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 68999999999999999999887766654
No 116
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=20.50 E-value=85 Score=21.03 Aligned_cols=52 Identities=23% Similarity=0.343 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHhcCCCCceEEeeeeccCCCcCCccccCCCHHHHHHHHHHHHhcCceeE
Q 038657 38 QDWADIILGFVKDNGLEDSVMTVEEIRLGIESRGTELHGMDRTILMRALKLLEHKGKVAI 97 (112)
Q Consensus 38 ~eWa~~Iy~Wv~~tG~~~tV~TlyEL~~Gd~t~~~ef~gmd~~vL~kaL~~L~k~gkAql 97 (112)
+--+..+.+.....|...--+|-.+|. ++-|+.++-+-|+|+.|+++|-.++
T Consensus 150 ~Rl~~~L~~~~~~~~~~~~~~t~~~lA--------~~lg~sr~tvsR~l~~L~~~g~I~~ 201 (220)
T 3dv8_A 150 KRVASFLLEETSIEGTNELKITHETIA--------NHLGSHREVITRMLRYFQVEGLVKL 201 (220)
T ss_dssp HHHHHHHHHHHHHHTSSEECCCHHHHH--------HHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHhhhhcCCceecCCHHHHH--------HHhCCCHHHHHHHHHHHHHCCCEEe
Confidence 446666777776665422222323332 6789999999999999999997764
No 117
>1ou9_A Stringent starvation protein B homolog; SSRA peptide-binding protein, homodimer, transport protein; 1.80A {Haemophilus influenzae} SCOP: b.136.1.1 PDB: 1oul_A 1zsz_C
Probab=20.49 E-value=46 Score=23.20 Aligned_cols=16 Identities=13% Similarity=0.252 Sum_probs=12.8
Q ss_pred HHHHHHHHhcCCCCce
Q 038657 42 DIILGFVKDNGLEDSV 57 (112)
Q Consensus 42 ~~Iy~Wv~~tG~~~tV 57 (112)
..+|+|+.+||.+--+
T Consensus 14 RA~yeWi~DN~~TP~L 29 (129)
T 1ou9_A 14 RAYYDWLVDNSFTPYL 29 (129)
T ss_dssp HHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHhCCCcceE
Confidence 4789999999985444
No 118
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=20.34 E-value=1.5e+02 Score=18.45 Aligned_cols=29 Identities=38% Similarity=0.424 Sum_probs=25.0
Q ss_pred cccCCCHHHHHHHHHHHHhcCceeEEecC
Q 038657 73 ELHGMDRTILMRALKLLEHKGKVAIFKGT 101 (112)
Q Consensus 73 ef~gmd~~vL~kaL~~L~k~gkAql~~~~ 101 (112)
+.-+++++-+.++++.|+++|=.+...+.
T Consensus 51 ~~l~~s~~~vs~~l~~Le~~gli~r~~~~ 79 (144)
T 1lj9_A 51 ELIKVDRTTAARAIKRLEEQGFIYRQEDA 79 (144)
T ss_dssp HHHTCCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred HHHCCCHhHHHHHHHHHHHCCCEEeecCC
Confidence 45689999999999999999999887654
No 119
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=20.28 E-value=67 Score=20.68 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=20.7
Q ss_pred cCCCHHHHHHHHHHHHhcCceeEE
Q 038657 75 HGMDRTILMRALKLLEHKGKVAIF 98 (112)
Q Consensus 75 ~gmd~~vL~kaL~~L~k~gkAql~ 98 (112)
-|++++-+.+.|+.|++.|-..-+
T Consensus 28 lg~s~~tv~~~l~~L~~~G~i~~~ 51 (141)
T 1i1g_A 28 LGISETAVRKRVKALEEKGIIEGY 51 (141)
T ss_dssp HTSCHHHHHHHHHHHHHHTSSCCC
T ss_pred HCcCHHHHHHHHHHHHHCCCEecc
Confidence 489999999999999999976533
No 120
>3jv1_A P22 protein; MAM33 family, hydrolase; 2.00A {Trypanosoma brucei} SCOP: d.25.1.0
Probab=20.27 E-value=77 Score=22.51 Aligned_cols=24 Identities=17% Similarity=0.369 Sum_probs=19.9
Q ss_pred CCccccCCCHHHHHHHHHHHHhcC
Q 038657 70 RGTELHGMDRTILMRALKLLEHKG 93 (112)
Q Consensus 70 ~~~ef~gmd~~vL~kaL~~L~k~g 93 (112)
.|..|..||+.+-.--.+.|+.||
T Consensus 126 ~GP~f~~LDe~Lq~~l~~yLeeRG 149 (182)
T 3jv1_A 126 MGPDLADLEDHLVDSFTSYLSARG 149 (182)
T ss_dssp CCCCGGGSCHHHHHHHHHHHHTTT
T ss_pred cCCCccccCHHHHHHHHHHHHHhC
Confidence 567899999987666668999988
No 121
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=20.09 E-value=77 Score=20.06 Aligned_cols=28 Identities=21% Similarity=0.217 Sum_probs=23.8
Q ss_pred cccCCCHHHHHHHHHHHHhcCceeEEec
Q 038657 73 ELHGMDRTILMRALKLLEHKGKVAIFKG 100 (112)
Q Consensus 73 ef~gmd~~vL~kaL~~L~k~gkAql~~~ 100 (112)
+.-|++.+-+.++++.|+++|=.+....
T Consensus 58 ~~l~i~~~~vs~~l~~Le~~glv~r~~~ 85 (147)
T 2hr3_A 58 AAERMRSSNLAALLRELERGGLIVRHAD 85 (147)
T ss_dssp HHTTCCHHHHHHHHHHHHHTTSEEEEC-
T ss_pred HHhCCChhhHHHHHHHHHHCCCEeeCCC
Confidence 3468999999999999999998887754
Done!